diff --git a/.gitignore b/.gitignore
index a08f648c..b01ddf27 100644
--- a/.gitignore
+++ b/.gitignore
@@ -15,3 +15,6 @@ notebooks/.ipynb_checkpoints
 .vscode
 /docs/_build
 *.log
+metadata_dump/
+notebooks/output_dir/
+output_dir/
diff --git a/app.py b/app.py
index 15f29b8f..929087a9 100644
--- a/app.py
+++ b/app.py
@@ -58,8 +58,19 @@
 from profiles.bioschemas_shape_gen import validate_any_from_microdata
 from metrics.util import SOURCE
 from metrics.F1B_Impl import F1B_Impl
+from metrics.F1B_Impl import F1B_Impl
 from urllib.parse import urlparse
 
+from profiles.Profile import Profile
+from profiles.ProfileFactory import (
+    ProfileFactory,
+    find_conformsto_subkg,
+    load_profiles,
+    update_profiles,
+    evaluate_profile_with_conformsto,
+    evaluate_profile_from_type,
+    dyn_evaluate_profile_with_conformsto,
+)
 
 import time
 import atexit
@@ -126,6 +137,9 @@ def index():
 
     # Prevent DEV logger from output
     dev_logger.propagate = False
+
+    # Update bioschemas profile when starting server in production
+    # update_profiles()
 else:
     app.config.from_object("config.DevelopmentConfig")
 
@@ -213,6 +227,8 @@ def index():
     {"name": "a2", "category": "A"},
 ]
 
+# Load bs profils dict (from github if not already in local)
+load_profiles()
 
 METRICS = {}
 # json_metrics = test_metric.getMetrics()
@@ -307,6 +323,8 @@ def display_vocab_status():
 scheduler.add_job(
     func=F1B_Impl.update_identifiers_org_dump, trigger="interval", seconds=604800
 )
+scheduler.add_job(func=update_profiles, trigger="interval", seconds=604800)
+
 scheduler.start()
 
 # Shut down the scheduler when exiting the app
@@ -471,10 +489,16 @@ def get(self):
 
         web_res = WebResource(url)
 
-        results = []
-        for key in METRICS_CUSTOM.keys():
-            metric = METRICS_CUSTOM[key]
+        metrics_collection = []
+        for metric_key in METRICS_CUSTOM.keys():
+            metric = METRICS_CUSTOM[metric_key]
             metric.set_web_resource(web_res)
+            metrics_collection.append(metric)
+
+        # metrics_collection = FAIRMetricsFactory.get_FC_impl(web_res)
+
+        results = []
+        for metric in metrics_collection:
             result = metric.evaluate()
             data = {
                 "metric": result.get_metrics(),
@@ -610,6 +634,7 @@ def get(self):
         return check_kg(kg, True)
 
 
+# TODO update method
 @fc_inspect_namespace.route("/bioschemas_validation")
 class InspectBioschemas(Resource):
     @fc_inspect_namespace.expect(reqparse)
@@ -620,10 +645,64 @@ def get(self):
 
         web_res = WebResource(url)
         kg = web_res.get_rdf()
-        results = validate_any_from_KG(kg)
+        results = {}
+
+        # Evaluate only profile with conformsTo
+        results_conformsto = dyn_evaluate_profile_with_conformsto(kg)
+
+        # Try to match and evaluate all found corresponding profiles
+        results_type = evaluate_profile_from_type(kg)
+
+        for result_key in results_conformsto.keys():
+            results[result_key] = results_conformsto[result_key]
+
+        for result_key in results_type.keys():
+            if result_key not in results:
+                results[result_key] = results_type[result_key]
+
+        # TODO Try similarity match her for profiles that are not matched
+
         return results
 
 
+@fc_inspect_namespace.route("/bioschemas_validation_by_conformsto")
+class InspectBioschemasConformsTo(Resource):
+    @fc_inspect_namespace.expect(reqparse)
+    def get(self):
+        """Validate an RDF JSON-LD graph against Bioschemas profiles using dct:conformsTo"""
+        args = reqparse.parse_args()
+        url = args["url"]
+
+        web_res = WebResource(url)
+        kg = web_res.get_rdf()
+
+        # Evaluate only profile with conformsTo
+        results_conformsto = dyn_evaluate_profile_with_conformsto(kg)
+
+        # TODO Try similarity match her for profiles that are not matched
+
+        return results_conformsto
+
+
+@fc_inspect_namespace.route("/bioschemas_validation_by_types")
+class InspectBioschemasTypesMatch(Resource):
+    @fc_inspect_namespace.expect(reqparse)
+    def get(self):
+        """Validate an RDF JSON-LD graph against Bioschemas profiles using types"""
+        args = reqparse.parse_args()
+        url = args["url"]
+
+        web_res = WebResource(url)
+        kg = web_res.get_rdf()
+
+        # Try to match and evaluate all found corresponding profiles
+        results_type = evaluate_profile_from_type(kg)
+
+        # TODO Try similarity match her for profiles that are not matched
+
+        return results_type
+
+
 def list_routes():
     return ["%s" % rule for rule in app.url_map.iter_rules()]
 
@@ -1522,6 +1601,49 @@ def check_kg_shape(data):
     # print(results)
 
 
+@DeprecationWarning
+@socketio.on("check_kg_shape_old")
+def check_kg_shape_old(data):
+    print("shape validation started")
+    sid = request.sid
+    print(sid)
+    kg = KGS[sid]
+
+    if not kg:
+        print("cannot access current knowledge graph")
+    elif len(kg) == 0:
+        print("cannot validate an empty knowledge graph")
+
+    results = validate_any_from_KG(kg)
+    emit("done_check_shape", results)
+
+
+def evaluate_bioschemas_profiles(kg):
+    # A instancier au lancement du serveur et actualiser lors d'updates
+    # profiles = ProfileFactory.create_all_profiles_from_specifications()
+
+    results = {}
+
+    # Evaluate only profile with conformsTo
+    results_conformsto = dyn_evaluate_profile_with_conformsto(kg)
+
+    # Try to match and evaluate all found corresponding profiles
+    results_type = evaluate_profile_from_type(kg)
+
+    for result_key in results_conformsto.keys():
+        results[result_key] = results_conformsto[result_key]
+
+    for result_key in results_type.keys():
+        if result_key not in results:
+            results[result_key] = results_type[result_key]
+
+    # TODO Try similarity match her for profiles that are not matched
+
+    print(results.keys())
+
+    return results
+
+
 @socketio.on("check_kg_shape_2")
 def check_kg_shape_2(data):
     print("shape validation started")
@@ -1534,10 +1656,57 @@ def check_kg_shape_2(data):
     elif len(kg) == 0:
         print("cannot validate an empty knowledge graph")
 
-    results = validate_any_from_KG(kg)
+    results = evaluate_bioschemas_profiles(kg)
+
+    # results = validate_any_from_KG(kg)
+
     emit("done_check_shape", results)
 
 
+def update_bioschemas_valid(func):
+    @functools.wraps(func)
+    def wrapper_decorator(*args, **kwargs):
+        # Do something before
+        start_time = time.time()
+
+        value = func(*args, **kwargs)
+
+        # Do something after
+        elapsed_time = round((time.time() - start_time), 2)
+        logging.info(f"Bioschemas validation processed in {elapsed_time} s")
+        # emit("done_check_shape", res, namespace="/validate_bioschemas")
+        # socketio.emit("done_check_shape", res, namespace="/inspect")
+        return value
+
+    return wrapper_decorator
+
+
+@app.route("/bioschemas_validation")
+@update_bioschemas_valid
+def validate_bioschemas():
+    uri = request.args.get("url")
+    logging.info(f"Validating Bioschemas markup for {uri}")
+
+    kg = WebResource(uri).get_rdf()
+    print(len(kg))
+
+    results = evaluate_bioschemas_profiles(kg)
+
+    # res, kg = validate_any_from_microdata(input_url=uri)
+
+    m = []
+    return render_template(
+        "bioschemas.html",
+        results=results,
+        kg=kg,
+        f_metrics=m,
+        sample_data=sample_resources,
+        title="Inspect",
+        subtitle="to enhance metadata quality",
+        jld=buildJSONLD(),
+    )
+
+
 #######################################
 #######################################
 
@@ -1707,45 +1876,6 @@ def base_metrics():
 #   return response
 
 
-def update_bioschemas_valid(func):
-    @functools.wraps(func)
-    def wrapper_decorator(*args, **kwargs):
-        # Do something before
-        start_time = time.time()
-
-        value = func(*args, **kwargs)
-
-        # Do something after
-        elapsed_time = round((time.time() - start_time), 2)
-        logging.info(f"Bioschemas validation processed in {elapsed_time} s")
-        # emit("done_check_shape", res, namespace="/validate_bioschemas")
-        # socketio.emit("done_check_shape", res, namespace="/inspect")
-        return value
-
-    return wrapper_decorator
-
-
-@app.route("/validate_bioschemas")
-@update_bioschemas_valid
-def validate_bioschemas():
-    uri = request.args.get("uri")
-    logging.debug(f"Validating Bioschemas markup fr {uri}")
-
-    res, kg = validate_any_from_microdata(input_url=uri)
-
-    m = []
-    return render_template(
-        "bioschemas.html",
-        results=res,
-        kg=kg,
-        f_metrics=m,
-        sample_data=sample_resources,
-        title="Inspect",
-        subtitle="to enhance metadata quality",
-        jld=buildJSONLD(),
-    )
-
-
 @app.route("/inspect")
 def kg_metrics_2():
     # m = [{  "name": "i1",
@@ -1867,6 +1997,10 @@ def get_result_style(result) -> str:
         sys.exit(1)
 
     args = parser.parse_args()
+    print(args)
+
+    if args.update:
+        print("UPDATE BS her")
 
     if args.debug:
         logging.basicConfig(
@@ -1901,20 +2035,10 @@ def get_result_style(result) -> str:
             web_res = WebResource(url)
 
             metrics_collection = []
-            metrics_collection.append(FAIRMetricsFactory.get_F1A(web_res))
-            metrics_collection.append(FAIRMetricsFactory.get_F1B(web_res))
-            metrics_collection.append(FAIRMetricsFactory.get_F2A(web_res))
-            metrics_collection.append(FAIRMetricsFactory.get_F2B(web_res))
-            metrics_collection.append(FAIRMetricsFactory.get_I1(web_res))
-            metrics_collection.append(FAIRMetricsFactory.get_I1A(web_res))
-            metrics_collection.append(FAIRMetricsFactory.get_I1B(web_res))
-            metrics_collection.append(FAIRMetricsFactory.get_I2(web_res))
-            metrics_collection.append(FAIRMetricsFactory.get_I2A(web_res))
-            metrics_collection.append(FAIRMetricsFactory.get_I2B(web_res))
-            metrics_collection.append(FAIRMetricsFactory.get_I3(web_res))
-            metrics_collection.append(FAIRMetricsFactory.get_R11(web_res))
-            metrics_collection.append(FAIRMetricsFactory.get_R12(web_res))
-            metrics_collection.append(FAIRMetricsFactory.get_R13(web_res))
+            for metric_key in METRICS_CUSTOM.keys():
+                metric = METRICS_CUSTOM[metric_key]
+                metric.set_web_resource(web_res)
+                metrics_collection.append(metric)
 
             if args.bioschemas:
                 logging.info("Bioschemas eval")
diff --git a/bioschemas-dump.ttl b/bioschemas-dump.ttl
index 296f1b59..bc48749f 100644
--- a/bioschemas-dump.ttl
+++ b/bioschemas-dump.ttl
@@ -1,49 +1,13 @@
 @prefix biotools: <https://bio.tools/ontology/> .
 @prefix bsc: <http://bioschemas.org/> .
 @prefix bsct: <http://bioschemas.org/types/> .
-@prefix dcterms: <http://purl.org/dc/terms/> .
+@prefix dct: <http://purl.org/dc/terms/> .
 @prefix edam: <http://edamontology.org/> .
 @prefix sc: <http://schema.org/> .
-@prefix schema: <https://schema.org/> .
 @prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
 
-<https://bio.tools/-CNN> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0749,
-        edam:topic_3169,
-        edam:topic_3295,
-        edam:topic_3474 ;
-    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTZ843>,
-        "pubmed:31742318" ;
-    sc:description """An Integrative Approach for Fine-Mapping Chromatin Interactions.
-
-Computational method for fine-mapping chromatin interactions, e.g., Hi-C.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'CNN', 'Hi-C'""" ;
-    sc:featureList edam:operation_3215,
-        edam:operation_3222,
-        edam:operation_3439 ;
-    sc:license "MIT" ;
-    sc:name "-CNN" ;
-    sc:url "https://github.com/ernstlab/X-CNN" .
-
-<https://bio.tools/-TRIS> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0102,
-        edam:topic_0199,
-        edam:topic_2229,
-        edam:topic_3379 ;
-    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTZ747>,
-        "pubmed:31589304" ;
-    sc:description """a graph-algorithm for comprehensive identification of vector genomic insertion sites.
-
-SUMMARY:Retroviruses and their vector derivatives integrate semi-randomly in the genome of host cells and are inherited by their progeny as stable genetic marks. The retrieval and mapping of the sequences flanking the virus-host DNA junctions allows the identification of insertion sites in gene therapy or virally infected patients, essential for monitoring the evolution of genetically modified cells in vivo. However, since ∼30% of insertions land in low complexity or repetitive regions of the host cell genome, they cannot be correctly assigned and are currently discarded, limiting the accuracy and predictive power of clonal tracking studies. Here, we present γ-TRIS, a new graph-based genome-free alignment tool for identifying insertion sites even if embedded in low complexity regions. By using γ-TRIS to reanalyze clinical studies, we observed improvements in clonal quantification and tracking""" ;
-    sc:featureList edam:operation_2422,
-        edam:operation_3198,
-        edam:operation_3799 ;
-    sc:name "-TRIS" ;
-    sc:url "https://bitbucket.org/bereste/g-tris" .
-
 <https://bio.tools/1000genomes> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
@@ -52,9 +16,18 @@ SUMMARY:Retroviruses and their vector derivatives integrate semi-randomly in the
         edam:topic_3325,
         edam:topic_3365,
         edam:topic_3473 ;
-    sc:citation <https://doi.org/10.1038/nature15393>,
+    sc:citation <https://doi.org/10.1038/nature09534>,
+        <https://doi.org/10.1038/nature11632>,
+        <https://doi.org/10.1038/nature15393>,
+        <https://doi.org/10.1038/nature15394>,
+        "pmcid:PMC3042601",
+        "pmcid:PMC3498066",
+        "pmcid:PMC4617611",
         "pmcid:PMC4750478",
-        "pubmed:26432245" ;
+        "pubmed:20981092",
+        "pubmed:23128226",
+        "pubmed:26432245",
+        "pubmed:26432246" ;
     sc:description "The 1000 Genomes Project ran between 2008 and 2015, creating a deep catalogue of human genetic variation. The International Genome Sample Resource (IGSR) was set up to ensure the future usability and accessibility of this data." ;
     sc:featureList edam:operation_0306,
         edam:operation_3196,
@@ -71,10 +44,10 @@ SUMMARY:Retroviruses and their vector derivatives integrate semi-randomly in the
 
 <https://bio.tools/1000genomes_assembly_converter> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1276" ;
-            sc:name "Nucleic acid features" ;
-            sc:sameAs "http://edamontology.org/data_1276" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1276" ;
+            sc:encodingFormat "http://edamontology.org/format_3007" ;
+            sc:name "Nucleic acid features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102 ;
     sc:author "Ensembl team" ;
@@ -93,10 +66,10 @@ SUMMARY:Retroviruses and their vector derivatives integrate semi-randomly in the
 
 <https://bio.tools/1000genomes_data_slicer> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2012" ;
-            sc:name "Sequence coordinates" ;
-            sc:sameAs "http://edamontology.org/data_2012" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2012" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence coordinates" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:author "Ensembl Genomes team" ;
@@ -116,14 +89,12 @@ SUMMARY:Retroviruses and their vector derivatives integrate semi-randomly in the
 
 <https://bio.tools/1000genomes_id_history_converter> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2610" ;
-            sc:name "Ensembl ID" ;
-            sc:sameAs "http://edamontology.org/data_2610" ] ;
+            sc:additionalType "http://edamontology.org/data_2610" ;
+            sc:name "Ensembl ID" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2610" ;
-            sc:name "Ensembl ID" ;
-            sc:sameAs "http://edamontology.org/data_2610" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2610" ;
+            sc:name "Ensembl ID" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3345 ;
     sc:author "Ensembl team" ;
@@ -143,10 +114,10 @@ SUMMARY:Retroviruses and their vector derivatives integrate semi-randomly in the
 
 <https://bio.tools/1000genomes_variation_pattern_finder> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence variations" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199 ;
     sc:author "Ensembl Genomes team",
@@ -168,10 +139,10 @@ SUMMARY:Retroviruses and their vector derivatives integrate semi-randomly in the
 
 <https://bio.tools/1000genomes_vcf2ped> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence variations" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0199 ;
@@ -189,7 +160,7 @@ SUMMARY:Retroviruses and their vector derivatives integrate semi-randomly in the
     biotools:primaryContact "Ensembl Genomes webteam" .
 
 <https://bio.tools/13Check_RNA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0593,
@@ -209,7 +180,7 @@ SUMMARY:Retroviruses and their vector derivatives integrate semi-randomly in the
         "J. A. Vila" .
 
 <https://bio.tools/1433pred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3534 ;
     sc:citation "pubmed:25735772" ;
@@ -224,31 +195,8 @@ SUMMARY:Retroviruses and their vector derivatives integrate semi-randomly in the
     sc:url "http://www.compbio.dundee.ac.uk/1433pred" ;
     biotools:primaryContact "The Barton Group" .
 
-<https://bio.tools/16S> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0659,
-        edam:topic_3277,
-        edam:topic_3697 ;
-    sc:citation <https://doi.org/10.7717/PEERJ.8133>,
-        "pmcid:PMC6894433",
-        "pubmed:31824766" ;
-    sc:description """The impact of storage conditions on human stool 16S rRNA microbiome composition and diversity.
-
-Background:Multiple factors can influence stool sample integrity upon sample collection. Preservation of faecal samples for microbiome studies is therefore an important step, particularly in tropical regions where resources are limited and high temperatures may significantly influence microbiota profiles. Freezing is the accepted standard to preserve faecal samples however, cold chain methods are often unfeasible in fieldwork scenarios particularly in low and middle-income countries and alternatives are required.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'stool', 'time-to-freezing', 'microbiome' (bio.tools/microbiome), 'fieldwork'""" ;
-    sc:featureList edam:operation_3192,
-        edam:operation_3435,
-        edam:operation_3799 ;
-    sc:name "16S" ;
-    sc:url "https://support.illumina.com/documents/documentation/chemistry_documentation/16s/16s-metagenomic-library-prep-guide-15044223-b.pdf" .
-
-<https://bio.tools/16s_amplicon_sequencing> a sc:SoftwareApplication ;
-    sc:description "As a leading provider of NGS services and a partner of Illumina, CD Genomics offers a portfolio of solutions for metagenomics sequencing. 16S/18S/ITS amplicon sequencing is characterized by cost-efficiency, high-speed and practicability to help you identify and investigate the microbial community. With over 10 years of experience, we can totally meet your project requirements and budgets in the exploration of microbial biodiversity. If you are interested in what CD Genomics can do with the 16S/18S/ITS Amplicon Sequencing, please do not hesitate to contact us. We are more than happy to be of assistance!" ;
-    sc:name "16S Amplicon Sequencing" ;
-    sc:url "https://www.cd-genomics.com/16S-18S-ITS-Amplicon-Sequencing.html" .
-
 <https://bio.tools/16s_classifier> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -264,7 +212,7 @@ Background:Multiple factors can influence stool sample integrity upon sample col
     biotools:primaryContact "MetaBioSys Group" .
 
 <https://bio.tools/16spip> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -278,20 +226,15 @@ Background:Multiple factors can influence stool sample integrity upon sample col
     sc:url "http://16spip.mypathogen.cn/" ;
     biotools:primaryContact "Wen Zhang" .
 
-<https://bio.tools/18s_amplicon_sequencing> a sc:SoftwareApplication ;
-    sc:description "As a leading provider of NGS services and a partner of Illumina, CD Genomics offers a portfolio of solutions for metagenomics sequencing. 16S/18S/ITS amplicon sequencing is characterized by cost-efficiency, high-speed and practicability to help you identify and investigate the microbial community. With over 10 years of experience, we can totally meet your project requirements and budgets in the exploration of microbial biodiversity. If you are interested in what CD Genomics can do with the 16S/18S/ITS Amplicon Sequencing, please do not hesitate to contact us. We are more than happy to be of assistance!" ;
-    sc:name "18S Amplicon Sequencing" ;
-    sc:url "https://www.cd-genomics.com/16S-18S-ITS-Amplicon-Sequencing.html" .
-
 <https://bio.tools/1928_diagnostics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "Cloud-based platform. Providing bioinformatic analysis of bacteria. Species identification (16S, WGS), typing (MLST, cgMLST, SNP), antibiotic resistance profiling, virulence. Possibility to add metadata for transmission analysis." ;
     sc:name "1928 Diagnostics" ;
     sc:softwareHelp <https://www.1928diagnostics.com/product/> ;
     sc:url "https://www.1928diagnostics.com/" .
 
 <https://bio.tools/19andme> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0634,
@@ -307,18 +250,8 @@ Background:Multiple factors can influence stool sample integrity upon sample col
     sc:url "https://19andme.covid19.mathematica.org" ;
     biotools:primaryContact <https://orcid.org/0000-0002-4299-3931> .
 
-<https://bio.tools/1KP> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0102,
-        edam:topic_0194,
-        edam:topic_0780 ;
-    sc:citation <https://doi.org/10.1101/735076> ;
-    sc:description "> LOW CONFIDENCE! | > CORRECT NAME OF TOOL COULD ALSO BE '1KP capstone', 'WGDs' | Inferring putative ancient whole genome duplications in the 1000 Plants (1KP) initiative | Polyploidy or whole genome duplications (WGDs) repeatedly occurred during green plant evolution. To examine the evolutionary history of green plants in a phylogenomic framework, the 1KP project sequenced over 1000 transcriptomes across the Viridiplantae. The 1KP project provided a unique opportunity to study the distribution and occurrence of WGDs across the green plants. In the 1KP capstone analyses, we used a total evidence approach that combined inferences of WGDs from Ks and phylogenomic methods to infer and place ancient WGDs. Overall, 244 putative ancient WGDs were inferred across the Viridiplantae. Here, we describe these analyses and evaluate the consistency of the WGD inferences by comparing them to evidence from published syntenic analyses of plant genome assemblies" ;
-    sc:featureList edam:operation_3891 ;
-    sc:name "1KP" ;
-    sc:url "https://bitbucket.org/barkerlab/1kp/src/master/" .
-
 <https://bio.tools/1d-dft-geometrical> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -335,7 +268,7 @@ Background:Multiple factors can influence stool sample integrity upon sample col
     biotools:primaryContact "Michael Chan" .
 
 <https://bio.tools/2-kupl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
         edam:topic_0199,
@@ -355,48 +288,8 @@ Background:Multiple factors can influence stool sample integrity upon sample col
     sc:name "2-kupl" ;
     sc:url "https://github.com/yunfengwang0317/2-kupl" .
 
-<https://bio.tools/2018> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0102,
-        edam:topic_3382,
-        edam:topic_3474,
-        edam:topic_3794 ;
-    sc:citation <https://doi.org/10.1038/S41592-019-0612-7>,
-        "pmcid:PMC6919559",
-        "pubmed:31636459" ;
-    sc:description """Nucleus segmentation across imaging experiments.
-
-Deep Retina 3th place solution to Kaggle's 2018 Data Science Bowl.
-
-This solution is based on Matterport's Mask_RCNN implementation on keras/tensorflow. Please look at the original repository (https://github.com/matterport/Mask_RCNN) for specific details. This is an implementation of Mask R-CNN on Python 3, Keras, and TensorFlow. The model generates bounding boxes and segmentation masks for each instance of an object in the image. It's based on Feature Pyramid Network (FPN) and a ResNet101 backbone. I have used the pretrained COCO weights as the starting point for my training on the nuclei segmentation dataset.
-
-Find the nuclei in divergent images to advance medical discovery.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'Nucleus segmentation across imaging experiments', 'Bowl', 'configuration-free', 'deep-learning-based'""" ;
-    sc:featureList edam:operation_3192,
-        edam:operation_3436,
-        edam:operation_3443,
-        edam:operation_3552,
-        edam:operation_3553 ;
-    sc:name "2018" ;
-    sc:url "https://www.kaggle.com/c/data-science-bowl-2018" .
-
-<https://bio.tools/2018_YPIC_Challenge> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0121,
-        edam:topic_0601,
-        edam:topic_3520 ;
-    sc:citation <https://doi.org/10.1021/ACS.JPROTEOME.9B00384>,
-        "pmcid:PMC6824964",
-        "pubmed:31556620" ;
-    sc:description "> MEDIUM CONFIDENCE! | A Case Study in Characterizing an Unknown Protein Sample | YPIC challenge 2018 data analysis" ;
-    sc:featureList edam:operation_0417,
-        edam:operation_0476,
-        edam:operation_3644 ;
-    sc:license "Apache-2.0" ;
-    sc:name "2018 YPIC Challenge" ;
-    sc:url "https://github.com/bittremieux/ypic_challenge_2018" .
-
 <https://bio.tools/2019ncovas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3324,
@@ -411,7 +304,7 @@ Find the nuclei in divergent images to advance medical discovery.
     sc:url "http://www.combio-lezhang.online/2019ncov/home.html" .
 
 <https://bio.tools/2020plus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0622,
@@ -436,31 +329,16 @@ Find the nuclei in divergent images to advance medical discovery.
     sc:url "https://github.com/KarchinLab/2020plus" ;
     biotools:primaryContact <https://orcid.org/0000-0003-1395-5378> .
 
-<https://bio.tools/25000_ug_BPA_kg_bw> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0749,
-        edam:topic_2640,
-        edam:topic_2840 ;
-    sc:citation "pubmed:31305969" ;
-    sc:description """A Perinatal and Chronic Extended-Dose-Range Study of Bisphenol A in Rats.
-
-Bisphenol A (BPA, CAS #80-05-7) is a high-production-volume industrial chemical used as a monomer for polycarbonate plastics and epoxy resins that have broad applications in consumer products, including storage containers for foods and beverages and medical devices. The potential toxicity resulting from chronic exposure to BPA as an indirect food additive is the concern addressed in this study.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'ug BPA kg bw day', 'ug EE2 kg bw day', 'EE2 kg bw day dose', 'stop-dose males terminal stop-dose BPA'""" ;
-    sc:name "25,000 ug BPA kg bw" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31305969" .
-
 <https://bio.tools/2DProt> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ] ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1475" ;
+            sc:name "Protein structure" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2992" ;
-            sc:name "Protein structure image" ;
-            sc:sameAs "http://edamontology.org/data_2992" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2992" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Protein structure image" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web API" ;
     sc:applicationSubCategory edam:topic_1317 ;
@@ -475,7 +353,7 @@ Bisphenol A (BPA, CAS #80-05-7) is a high-production-volume industrial chemical
     sc:url "https://2dprots.ncbr.muni.cz/" .
 
 <https://bio.tools/2StrucCompare> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0166,
@@ -499,8 +377,29 @@ Bisphenol A (BPA, CAS #80-05-7) is a high-production-volume industrial chemical
     biotools:primaryContact "Elliot Drew",
         "Robert W. Janes" .
 
+<https://bio.tools/2b-alert_web> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_2815,
+        edam:topic_3318,
+        edam:topic_3520 ;
+    sc:citation <https://doi.org/10.2196/29595>,
+        <https://doi.org/10.5665/sleep.6318>,
+        "pmcid:PMC5103804",
+        "pmcid:PMC8832274",
+        "pubmed:27634801",
+        "pubmed:35084336" ;
+    sc:description "2B-Alert Web, an open-access tool for predicting neurobehavioral performance, which accounts for the effects of sleep/wake schedules, time of day, and caffeine consumption, while incorporating the latest scientific findings in sleep restriction, sleep extension, and recovery sleep." ;
+    sc:featureList edam:operation_2426 ;
+    sc:isAccessibleForFree true ;
+    sc:name "2B-Alert Web" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://2b-alert-web.bhsai.org" .
+
 <https://bio.tools/2d-image-cepstral-analysis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -519,7 +418,7 @@ Bisphenol A (BPA, CAS #80-05-7) is a high-production-volume industrial chemical
     biotools:primaryContact "Pavel Paunov" .
 
 <https://bio.tools/2d-mh> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0154 ;
@@ -538,38 +437,31 @@ Bisphenol A (BPA, CAS #80-05-7) is a high-production-volume industrial chemical
 
 <https://bio.tools/2d-page> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2091" ;
-            sc:name "Accession" ;
-            sc:sameAs "http://edamontology.org/data_2091" ],
+            sc:additionalType "http://edamontology.org/data_2091" ;
+            sc:name "Accession" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1528" ;
-            sc:name "Protein isoelectric point" ;
-            sc:sameAs "http://edamontology.org/data_1528" ],
+            sc:additionalType "http://edamontology.org/data_1519" ;
+            sc:name "Peptide molecular weights" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2373" ;
-            sc:name "Spot ID" ;
-            sc:sameAs "http://edamontology.org/data_2373" ],
+            sc:additionalType "http://edamontology.org/data_3021" ;
+            sc:name "UniProt accession" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1519" ;
-            sc:name "Peptide molecular weights" ;
-            sc:sameAs "http://edamontology.org/data_1519" ],
+            sc:additionalType "http://edamontology.org/data_2373" ;
+            sc:name "Spot ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3021" ;
-            sc:name "UniProt accession" ;
-            sc:sameAs "http://edamontology.org/data_3021" ] ;
+            sc:additionalType "http://edamontology.org/data_1528" ;
+            sc:name "Protein isoelectric point" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0942" ;
-            sc:name "2D PAGE image" ;
-            sc:sameAs "http://edamontology.org/data_0942" ],
+            sc:additionalType "http://edamontology.org/data_0942" ;
+            sc:name "2D PAGE image" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1528" ;
-            sc:name "Protein isoelectric point" ;
-            sc:sameAs "http://edamontology.org/data_1528" ],
+            sc:additionalType "http://edamontology.org/data_0897" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Protein property" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0897" ;
-            sc:name "Protein property" ;
-            sc:sameAs "http://edamontology.org/data_0897" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1528" ;
+            sc:name "Protein isoelectric point" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0121 ;
     sc:citation <https://doi.org/10.1002/pmic.200300483> ;
@@ -585,7 +477,7 @@ Bisphenol A (BPA, CAS #80-05-7) is a high-production-volume industrial chemical
     biotools:primaryContact "Luca Bini" .
 
 <https://bio.tools/2dSS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0082,
@@ -607,7 +499,7 @@ Bisphenol A (BPA, CAS #80-05-7) is a high-production-volume industrial chemical
     biotools:primaryContact "Juliana S.. Bernardes" .
 
 <https://bio.tools/2dar2darma-param-estimation> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:description "Algorithms for 2D AR and 2D ARMA parameters estimation." ;
     sc:isAccessibleForFree true ;
@@ -620,7 +512,7 @@ Bisphenol A (BPA, CAS #80-05-7) is a high-production-volume industrial chemical
     biotools:primaryContact "Simona Maggio" .
 
 <https://bio.tools/2de-pattern> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -634,7 +526,7 @@ Bisphenol A (BPA, CAS #80-05-7) is a high-production-volume industrial chemical
     sc:url "http://2de-pattern.pnpi.nrcki.ru" .
 
 <https://bio.tools/2dimpute> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0622,
@@ -654,7 +546,7 @@ Bisphenol A (BPA, CAS #80-05-7) is a high-production-volume industrial chemical
     sc:url "https://github.com/zky0708/2DImpute" .
 
 <https://bio.tools/2dkd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0634,
@@ -672,10 +564,9 @@ Bisphenol A (BPA, CAS #80-05-7) is a high-production-volume industrial chemical
 
 <https://bio.tools/2dx> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3424" ;
-            sc:name "Raw image" ;
-            sc:sameAs "http://edamontology.org/data_3424" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3424" ;
+            sc:name "Raw image" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0611,
         edam:topic_1317 ;
@@ -692,7 +583,7 @@ Bisphenol A (BPA, CAS #80-05-7) is a high-production-volume industrial chemical
     sc:url "http://www.2dx.unibas.ch/" .
 
 <https://bio.tools/2kplus2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2885,
         edam:topic_3053 ;
@@ -708,7 +599,7 @@ Bisphenol A (BPA, CAS #80-05-7) is a high-production-volume industrial chemical
     biotools:primaryContact "Team MacLean" .
 
 <https://bio.tools/2lpirnapred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_0798,
         edam:topic_3512 ;
@@ -722,7 +613,7 @@ Bisphenol A (BPA, CAS #80-05-7) is a high-production-volume industrial chemical
     sc:url "https://github.com/JianyuanLin/2lpiRNApred" .
 
 <https://bio.tools/2passtools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_3170,
@@ -741,7 +632,7 @@ Bisphenol A (BPA, CAS #80-05-7) is a high-production-volume industrial chemical
     sc:url "https://github.com/bartongroup/2passtools" .
 
 <https://bio.tools/2sigfinder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0659,
@@ -763,7 +654,7 @@ Genomic island (GI) is a cluster of genes in prokaryotic genomes that have proba
     sc:url "http://bioinfo.zstu.edu.cn/2SigFinder" .
 
 <https://bio.tools/3CDB> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_3176 ;
     sc:citation <https://doi.org/10.1007/978-1-60327-414-2_12>,
@@ -777,7 +668,7 @@ Genomic island (GI) is a cluster of genes in prokaryotic genomes that have proba
     sc:url "http://3cdb.big.ac.cn/index.jsp" .
 
 <https://bio.tools/3D-ADA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_3382 ;
     sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTZ364>,
@@ -789,7 +680,7 @@ Genomic island (GI) is a cluster of genes in prokaryotic genomes that have proba
     sc:url "https://github.com/xulabs/aitom/tree/master/aitom/classify/deep/supervised/cnn/domain_adaptation_adversarial" .
 
 <https://bio.tools/3D-Cardiomics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0749,
@@ -805,7 +696,7 @@ Genomic island (GI) is a cluster of genes in prokaryotic genomes that have proba
     sc:url "http://3d-cardiomics.erc.monash.edu/" .
 
 <https://bio.tools/3DCNN> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_2814,
@@ -821,7 +712,7 @@ Genomic island (GI) is a cluster of genes in prokaryotic genomes that have proba
     sc:url "https://github.com/ishidalab-titech/3DCNN_MQA" .
 
 <https://bio.tools/3DChrom> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0654,
@@ -839,7 +730,7 @@ Genomic island (GI) is a cluster of genes in prokaryotic genomes that have proba
     sc:url "http://dna.cs.miami.edu/3DChrom/" .
 
 <https://bio.tools/3DGV> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0122,
         edam:topic_3173 ;
@@ -856,7 +747,7 @@ Genomic island (GI) is a cluster of genes in prokaryotic genomes that have proba
     biotools:primaryContact <https://orcid.org/0000-0002-2561-7117> .
 
 <https://bio.tools/3DMorph> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3382,
@@ -875,29 +766,8 @@ Genomic island (GI) is a cluster of genes in prokaryotic genomes that have proba
         "Windows" ;
     sc:url "https://github.com/ElisaYork/3DMorph" .
 
-<https://bio.tools/3DR> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0160,
-        edam:topic_0196,
-        edam:topic_0204,
-        edam:topic_0621,
-        edam:topic_3169 ;
-    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTZ775>,
-        "pubmed:31605131" ;
-    sc:description """Studying 3D genome evolution using genomic sequence.
-
-MOTIVATION:The 3D genome is essential to numerous key processes such as the regulation of gene expression and the replication-timing program. In vertebrates, chromatin looping is often mediated by CTCF, and marked by CTCF motif pairs in convergent orientation. Comparative Hi-C recently revealed that chromatin looping evolves across species. However, Hi-C experiments are complex and costly, which currently limits their use for evolutionary studies over a large number of species. RESULTS:Here, we propose a novel approach to study the 3D genome evolution in vertebrates using the genomic sequence only, e.g. without the need for Hi-C data. The approach is simple and relies on comparing the distances between convergent and divergent CTCF motifs by computing a ratio we named the 3D ratio or "3DR".
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'PhyloCTCFLooping', 'CTCF', 'looping', 'AVAILABILITY:The'""" ;
-    sc:featureList edam:operation_0481,
-        edam:operation_0525,
-        edam:operation_3745 ;
-    sc:name "3DR" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31605131" .
-
 <https://bio.tools/3DSlicer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0605,
         edam:topic_3315,
@@ -910,36 +780,8 @@ Related to bio.tools/fossilj.""" ;
     sc:softwareHelp <https://www.slicer.org/wiki/Main_Page> ;
     sc:url "https://www.slicer.org/" .
 
-<https://bio.tools/3DSlicer_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3303,
-        edam:topic_3452 ;
-    sc:citation <https://doi.org/10.1016/J.JOMS.2019.11.013>,
-        "pubmed:31843280" ;
-    sc:description """In-House Surgeon-Led Virtual Surgical Planning for Maxillofacial Reconstruction.
-
-PURPOSE:Virtual surgical planning (VSP) and custom fabricated cutting guides for maxillofacial reconstruction have been shown to improve the accuracy of bony reconstruction and overall surgical efficiency and decrease the ischemia time. Our aim was to describe an in-house VSP technique for maxillofacial reconstructive procedures. MATERIALS AND METHODS:We used 2 free software applications. 3DSlicer (available at: http: www. 3dslicer.org) was used to extract the bones of interest for the recipient and the donor sites from the computed tomography scan's DICOM (digital imaging and communications in medicine) data. The Autodesk Meshmixer (Autodesk Inc, San Rafael, CA) was used to perform VSP and fabrication of the cutting guides.
-
-||| HOMEPAGE BROKEN!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'VSP', 'in-house VSP', 'maxillofacial'""" ;
-    sc:featureList edam:operation_3431 ;
-    sc:name "3DSlicer_autogenerated" ;
-    sc:url "http://www.3dslicer.org" .
-
-<https://bio.tools/3D_Genome> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0602,
-        edam:topic_3169,
-        edam:topic_3474 ;
-    sc:citation <https://doi.org/10.1101/739698> ;
-    sc:description "> VERY_LOW CONFIDENCE! | > CORRECT NAME OF TOOL COULD ALSO BE '3D Genome Browser', 'Peakachu' | A supervised learning framework for chromatin loop detection in genome-wide contact maps | visualize Hi-C, ChIA-PET, HiCHiP, PLAC-Seq, Capture Hi-C data | 3D genome browser, Hi-C browser, ChIA-PET browser, Capture Hi-C browser | Welcome to 3D Genome Browser, where you can join 50,000 other users from over 100 countries to explore chromatin interaction data, such as Hi-C, ChIA-PET, Capture Hi-C, PLAC-Seq, and more. Up till Dec. 2017, we have been visited more than 500,000 times!" ;
-    sc:featureList edam:operation_0441,
-        edam:operation_3208,
-        edam:operation_3501 ;
-    sc:name "3D Genome" ;
-    sc:url "http://www.3dgenome.org" .
-
 <https://bio.tools/3Dscript> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0176,
         edam:topic_3382 ;
@@ -960,22 +802,22 @@ PURPOSE:Virtual surgical planning (VSP) and custom fabricated cutting guides for
 
 <https://bio.tools/3SRP> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3495" ;
-            sc:name "RNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3495" ] ;
+            sc:additionalType "http://edamontology.org/data_3495" ;
+            sc:encodingFormat "http://edamontology.org/format_1931" ;
+            sc:name "RNA sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3112" ;
-            sc:name "Gene expression matrix" ;
-            sc:sameAs "http://edamontology.org/data_3112" ],
+            sc:additionalType "http://edamontology.org/data_3112" ;
+            sc:encodingFormat "http://edamontology.org/format_3751" ;
+            sc:name "Gene expression matrix" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ],
+            sc:additionalType "http://edamontology.org/data_3768" ;
+            sc:encodingFormat "http://edamontology.org/format_3603" ;
+            sc:name "Clustered expression profiles" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3768" ;
-            sc:name "Clustered expression profiles" ;
-            sc:sameAs "http://edamontology.org/data_3768" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_3308 ;
     sc:author <https://orcid.org/0000-0002-8571-7603>,
@@ -1024,7 +866,7 @@ If secondary analysis has been asked (providing a comparisons file), the express
     biotools:primaryContact <https://orcid.org/0000-0002-8571-7603> .
 
 <https://bio.tools/3_aqtl-atlas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2885,
@@ -1046,8 +888,26 @@ If secondary analysis has been asked (providing a comparisons file), the express
         "Windows" ;
     sc:url "https://wlcb.oit.uci.edu/3aQTLatlas" .
 
+<https://bio.tools/3cac> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0196,
+        edam:topic_0798,
+        edam:topic_3174,
+        edam:topic_3697 ;
+    sc:citation <https://doi.org/10.1101/2021.11.05.467408> ;
+    sc:description "3CAC is a three-class classifier designed to classify contigs in mixed metagenome assemblies as phages, plasmids, chromosomes, or uncertain. 3CAC generates its initial classification by existing classifiers: viralVerify, PPR-Meta, PlasClass, and deepVirFinder. Thus, prior to running 3CAC, installation of these tools are required." ;
+    sc:featureList edam:operation_0310,
+        edam:operation_3472,
+        edam:operation_3731 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "3CAC" ;
+    sc:url "https://github.com/Shamir-Lab/3CAC" ;
+    biotools:primaryContact <https://orcid.org/0000-0003-1889-9870> .
+
 <https://bio.tools/3cnet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0634,
@@ -1068,7 +928,7 @@ If secondary analysis has been asked (providing a comparisons file), the express
     sc:url "https://zenodo.org/record/4716879#.YIO-xqkzZH1" .
 
 <https://bio.tools/3d-SPADE> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3300,
         edam:topic_3304 ;
@@ -1081,8 +941,27 @@ If secondary analysis has been asked (providing a comparisons file), the express
     sc:name "3d-SPADE" ;
     sc:url "https://elephant.readthedocs.io/en/latest/reference/spade.html" .
 
+<https://bio.tools/3d-beacons> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Web API",
+        "Web service" ;
+    sc:applicationSubCategory edam:topic_1317,
+        edam:topic_2275 ;
+    sc:citation <https://doi.org/10.1101/2022.08.01.501973> ;
+    sc:description "The 3D-Beacons Network provides unified programmatic access to experimentally determined and predicted structure models." ;
+    sc:isAccessibleForFree true ;
+    sc:license "Apache-2.0" ;
+    sc:name "3D-Beacons" ;
+    sc:softwareHelp <https://www.ebi.ac.uk/pdbe/pdbe-kb/3dbeacons/api/>,
+        <https://www.ebi.ac.uk/pdbe/pdbe-kb/3dbeacons/docs>,
+        <https://www.ebi.ac.uk/pdbe/pdbe-kb/3dbeacons/guidelines> ;
+    sc:softwareVersion "1.0.0" ;
+    sc:url "https://3d-beacons.org" ;
+    biotools:primaryContact <https://orcid.org/0000-0002-3687-0839> .
+
 <https://bio.tools/3d-blast> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
@@ -1102,7 +981,7 @@ If secondary analysis has been asked (providing a comparisons file), the express
     sc:url "http://3d-blast.life.nctu.edu.tw/" .
 
 <https://bio.tools/3d-cell-annotator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3383,
@@ -1116,7 +995,7 @@ If secondary analysis has been asked (providing a comparisons file), the express
     sc:url "http://www.3D-cell-annotator.org" .
 
 <https://bio.tools/3d-ct-mri-images> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3306,
         edam:topic_3344,
@@ -1135,7 +1014,7 @@ If secondary analysis has been asked (providing a comparisons file), the express
     biotools:primaryContact "Gang Wang" .
 
 <https://bio.tools/3d-dart> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0097,
@@ -1159,7 +1038,7 @@ If secondary analysis has been asked (providing a comparisons file), the express
     biotools:primaryContact <http://orcid.org/0000-0001-7369-1322> .
 
 <https://bio.tools/3d-diffusion-gradient> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3315,
@@ -1177,7 +1056,7 @@ If secondary analysis has been asked (providing a comparisons file), the express
     biotools:primaryContact "Khaled Khairy" .
 
 <https://bio.tools/3d-dna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
@@ -1193,7 +1072,7 @@ If secondary analysis has been asked (providing a comparisons file), the express
     biotools:primaryContact <http://orcid.org/0000-0003-0634-6486> .
 
 <https://bio.tools/3d-e-chem> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0154,
@@ -1218,7 +1097,7 @@ If secondary analysis has been asked (providing a comparisons file), the express
         "S. Verhoeven" .
 
 <https://bio.tools/3d-footprint> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0081,
@@ -1239,7 +1118,7 @@ If secondary analysis has been asked (providing a comparisons file), the express
     biotools:primaryContact "3D-Footprint Support" .
 
 <https://bio.tools/3d-free-form-image-registration-toolbox-gui> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3306,
         edam:topic_3344,
@@ -1256,7 +1135,7 @@ If secondary analysis has been asked (providing a comparisons file), the express
     biotools:primaryContact "Daniel Markel" .
 
 <https://bio.tools/3d-fun> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -1274,7 +1153,7 @@ If secondary analysis has been asked (providing a comparisons file), the express
     sc:url "http://3dfun.bioinfo.pl" .
 
 <https://bio.tools/3d-gnome> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0621,
@@ -1295,7 +1174,7 @@ If secondary analysis has been asked (providing a comparisons file), the express
     sc:url "https://3dgnome.cent.uw.edu.pl/" .
 
 <https://bio.tools/3d-image-stacker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -1312,7 +1191,7 @@ If secondary analysis has been asked (providing a comparisons file), the express
     biotools:primaryContact "boyexex" .
 
 <https://bio.tools/3d-jury> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -1331,7 +1210,7 @@ If secondary analysis has been asked (providing a comparisons file), the express
     sc:url "http://meta.bioinfo.pl/submit_wizard.pl" .
 
 <https://bio.tools/3d-kinematics-inverse-dynamics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:description "Computations of joint angles and displacements, moments and forces (lower / upper limb)" ;
     sc:isAccessibleForFree true ;
@@ -1344,7 +1223,7 @@ If secondary analysis has been asked (providing a comparisons file), the express
     biotools:primaryContact "Raphael Dumas" .
 
 <https://bio.tools/3d-partner> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -1370,7 +1249,7 @@ If secondary analysis has been asked (providing a comparisons file), the express
         "Yu-Shu Lo" .
 
 <https://bio.tools/3d-phovis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3383,
         edam:topic_3384,
@@ -1389,7 +1268,7 @@ Bio Optics and Acoustics Laboratory.""" ;
     sc:url "http://www.boa-lab.com" .
 
 <https://bio.tools/3d-pssm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -1412,7 +1291,7 @@ Bio Optics and Acoustics Laboratory.""" ;
     biotools:primaryContact "Lawrence Kelley" .
 
 <https://bio.tools/3d-qsar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0209,
         edam:topic_2258,
         edam:topic_2275,
@@ -1429,7 +1308,7 @@ The underlying idea of any field-based 3-D QSAR is that differences in a target
     sc:url "http://www.3d-qsar.com" .
 
 <https://bio.tools/3d-rna-seq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0780,
@@ -1450,7 +1329,7 @@ The underlying idea of any field-based 3-D QSAR is that differences in a target
     sc:url "https://3drnaseq.hutton.ac.uk/app_direct/3DRNAseq/" .
 
 <https://bio.tools/3d-shepp-logan-phantom> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -1467,7 +1346,7 @@ The underlying idea of any field-based 3-D QSAR is that differences in a target
     biotools:primaryContact "Patrick Bolan" .
 
 <https://bio.tools/3d-surfer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0166 ;
     sc:citation "pubmed:24573477" ;
@@ -1480,7 +1359,7 @@ The underlying idea of any field-based 3-D QSAR is that differences in a target
     sc:url "http://kiharalab.org/3d-surfer/" .
 
 <https://bio.tools/3d-xguide> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3067,
         edam:topic_3444,
@@ -1496,7 +1375,7 @@ The underlying idea of any field-based 3-D QSAR is that differences in a target
     sc:url "https://github.com/ExCaVI-Ulm/3D-XGuide" .
 
 <https://bio.tools/3dRNA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0097,
@@ -1513,20 +1392,25 @@ The underlying idea of any field-based 3-D QSAR is that differences in a target
     sc:url "http://biophy.hust.edu.cn/3dRNA" .
 
 <https://bio.tools/3dSpAn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3382 ;
-    sc:citation <https://doi.org/10.1101/864587> ;
+    sc:citation <https://doi.org/10.1007/S12021-021-09549-0>,
+        "pubmed:34743262" ;
     sc:description "An interactive software for 3D segmentation and analysis of dendritic spines." ;
     sc:featureList edam:operation_3450,
         edam:operation_3799 ;
     sc:name "3D Spine Analysis Software (3dSpAn)" ;
     sc:softwareHelp <https://www.dropbox.com/s/xje11w9txey9wbj/3dSpAn_supplementary.pdf> ;
-    sc:url "https://sites.google.com/view/3dSpAn/" .
+    sc:url "https://sites.google.com/view/3dSpAn/" ;
+    biotools:primaryContact <https://orcid.org/0000-0002-7269-983X>,
+        <https://orcid.org/0000-0003-1780-0461>,
+        "Ewa Baczynska",
+        "Nirmal Das" .
 
 <https://bio.tools/3danalytical-magnetic-resonance-imaging> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -1543,31 +1427,38 @@ The underlying idea of any field-based 3-D QSAR is that differences in a target
 
 <https://bio.tools/3dbionotes> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3021" ;
-            sc:name "UniProt accession" ;
-            sc:sameAs "http://edamontology.org/data_3021" ],
+            sc:additionalType "http://edamontology.org/data_1146" ;
+            sc:name "EMDB ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1146" ;
-            sc:name "EMDB ID" ;
-            sc:sameAs "http://edamontology.org/data_1146" ],
+            sc:additionalType "http://edamontology.org/data_1127" ;
+            sc:name "PDB ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1127" ;
-            sc:name "PDB ID" ;
-            sc:sameAs "http://edamontology.org/data_1127" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3021" ;
+            sc:name "UniProt accession" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0219,
         edam:topic_3047,
         edam:topic_3366 ;
-    sc:author "Joan Segura" ;
+    sc:author <https://orcid.org/0000-0002-0735-4317>,
+        "Joan Segura" ;
     sc:citation <https://doi.org/10.1016/j.jsb.2016.02.007>,
+        <https://doi.org/10.1093/bioinformatics/btab397>,
         <https://doi.org/10.1093/bioinformatics/btx483>,
         <https://doi.org/10.1093/bioinformatics/btz118> ;
     sc:description "Web based application designed to integrate protein structure, protein sequence and protein annotations in a unique graphical environment. The current version of the application offers a unified, enriched and interactive view of EMDB volumes, PDB structures and Uniprot sequences where the protein annotations stored in Uniprot, Immune Epitope DB, Phospho Site Plus, BioMuta and dSysMap can be explored interactively at sequence and structural level." ;
     sc:featureList edam:operation_0564,
         edam:operation_0570,
         edam:operation_2422 ;
+    sc:funder "CORBEL",
+        "CSIC",
+        "Comunidad de Madrid",
+        "EOSC-Life",
+        "Instituto de Salud Carlos III",
+        "Spanish Ministry of Science and Innovation" ;
+    sc:isAccessibleForFree true ;
+    sc:license "Apache-2.0" ;
     sc:name "3DBIONOTES" ;
     sc:operatingSystem "Linux",
         "Mac",
@@ -1577,10 +1468,34 @@ The underlying idea of any field-based 3-D QSAR is that differences in a target
         "cnb.csic.es" ;
     sc:softwareHelp <http://3dbionotes.cnb.csic.es/ws/help> ;
     sc:softwareVersion "v3" ;
-    sc:url "http://3dbionotes.cnb.csic.es/ws" .
+    sc:url "http://3dbionotes.cnb.csic.es/ws" ;
+    biotools:primaryContact <https://orcid.org/0000-0003-2621-6806> .
+
+<https://bio.tools/3dcellseg> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workbench",
+        "Workflow" ;
+    sc:applicationSubCategory edam:topic_0780,
+        edam:topic_2229,
+        edam:topic_3382,
+        edam:topic_3474,
+        edam:topic_3500 ;
+    sc:citation <https://doi.org/10.1038/S41598-021-04048-3>,
+        "pmcid:PMC8748745",
+        "pubmed:35013443" ;
+    sc:description "A light and robust tool to do 3D cell instance segmentation for cell membrane images. It is useful when the cells clump together." ;
+    sc:featureList edam:operation_3443,
+        edam:operation_3552,
+        edam:operation_3553 ;
+    sc:isAccessibleForFree true ;
+    sc:name "3DCellSeg" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/AntonotnaWang/3DCellSeg" .
 
 <https://bio.tools/3dcomb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2814 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btr432> ;
@@ -1593,7 +1508,7 @@ The underlying idea of any field-based 3-D QSAR is that differences in a target
     sc:url "http://ttic.uchicago.edu/~jinbo/software.htm" .
 
 <https://bio.tools/3defdr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_2269,
@@ -1613,7 +1528,7 @@ An important unanswered question in chromatin biology is the extent to which lon
     sc:url "https://bitbucket.org/creminslab/5c3defdr" .
 
 <https://bio.tools/3dem_loupe> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0611,
@@ -1633,7 +1548,7 @@ An important unanswered question in chromatin biology is the extent to which lon
     biotools:primaryContact "3DEM Loupe Team" .
 
 <https://bio.tools/3dembenchmark> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_3569 ;
@@ -1649,8 +1564,71 @@ An important unanswered question in chromatin biology is the extent to which lon
     sc:url "http://i2pc.cnb.csic.es/3dembenchmark/LoadHome.htm" ;
     biotools:primaryContact "Joan Segura" .
 
+<https://bio.tools/3dfi> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workbench" ;
+    sc:applicationSubCategory edam:topic_0082,
+        edam:topic_0121,
+        edam:topic_0769,
+        edam:topic_2814,
+        edam:topic_3400 ;
+    sc:citation <https://doi.org/10.1093/BIOADV/VBAB030>,
+        "pmcid:PMC9162058",
+        "pubmed:35664289" ;
+    sc:description "The 3DFI pipeline predicts the 3D structure of proteins and searches for structural homology in the 3D space." ;
+    sc:featureList edam:operation_0303,
+        edam:operation_0474,
+        edam:operation_0570,
+        edam:operation_3663,
+        edam:operation_3767 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "3DFI" ;
+    sc:operatingSystem "Linux" ;
+    sc:url "https://github.com/PombertLab/3DFI" .
+
+<https://bio.tools/3dgenbench> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0082,
+        edam:topic_0199,
+        edam:topic_0621,
+        edam:topic_3169,
+        edam:topic_3912 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAC396>,
+        "pmcid:PMC9252746",
+        "pubmed:35639501" ;
+    sc:description "A web-server to benchmark computational models for 3D Genomics." ;
+    sc:featureList edam:operation_0475,
+        edam:operation_2483,
+        edam:operation_3435 ;
+    sc:license "GPL-3.0" ;
+    sc:name "3DGenBench" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://3dgenbench.net/" .
+
+<https://bio.tools/3dgt-ddi> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0202,
+        edam:topic_3336,
+        edam:topic_3375,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1093/BIB/BBAC134>,
+        "pubmed:35511112" ;
+    sc:description "3D graph and text based neural network for drug-drug interaction prediction." ;
+    sc:featureList edam:operation_3625,
+        edam:operation_3927,
+        edam:operation_4009 ;
+    sc:license "Apache-2.0" ;
+    sc:name "3DGT-DDI" ;
+    sc:url "https://github.com/hehh77/3DGT-DDI" .
+
 <https://bio.tools/3diana> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0128,
@@ -1669,7 +1647,7 @@ An important unanswered question in chromatin biology is the extent to which lon
     sc:url "http://3diana.cnb.csic.es/" .
 
 <https://bio.tools/3did> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0130,
@@ -1692,7 +1670,7 @@ An important unanswered question in chromatin biology is the extent to which lon
     biotools:primaryContact "Patrick Aloy" .
 
 <https://bio.tools/3div> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0204,
@@ -1712,7 +1690,7 @@ An important unanswered question in chromatin biology is the extent to which lon
     sc:url "http://3div.kr" .
 
 <https://bio.tools/3dligandsite> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0154,
@@ -1733,7 +1711,7 @@ An important unanswered question in chromatin biology is the extent to which lon
     biotools:primaryContact "Mark Wass" .
 
 <https://bio.tools/3dlogo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0121,
@@ -1752,7 +1730,7 @@ An important unanswered question in chromatin biology is the extent to which lon
     sc:url "http://3dlogo.uniroma2.it/3dLOGO/home.html" .
 
 <https://bio.tools/3dmem-enzyme> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script",
         "Workbench" ;
     sc:applicationSubCategory edam:topic_0821,
@@ -1771,12 +1749,19 @@ An important unanswered question in chromatin biology is the extent to which lon
     biotools:primaryContact "Vassilios Burganos" .
 
 <https://bio.tools/3dmol> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
-    sc:applicationSubCategory edam:topic_2275 ;
-    sc:citation "pubmed:25505090" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_2275,
+        edam:topic_3314,
+        edam:topic_3382 ;
+    sc:citation <https://doi.org/10.1021/ACS.JCHEMED.0C00579>,
+        "pmcid:PMC9416521",
+        "pubmed:25505090",
+        "pubmed:36035779" ;
     sc:description "Object-oriented, webGL based JavaScript library for online molecular visualization – No Java required! With 3Dmol.js, you can add beautifully rendered molecular visualizations to your web applications." ;
     sc:featureList edam:operation_0570 ;
+    sc:license "BSD-3-Clause" ;
     sc:name "3Dmol.js" ;
     sc:operatingSystem "Linux",
         "Mac",
@@ -1785,7 +1770,7 @@ An important unanswered question in chromatin biology is the extent to which lon
     sc:url "http://3dmol.csb.pitt.edu/" .
 
 <https://bio.tools/3dnalandscapes> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0082,
@@ -1804,14 +1789,13 @@ An important unanswered question in chromatin biology is the extent to which lon
 
 <https://bio.tools/3dnetmod> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3108" ;
-            sc:name "Experimental measurement" ;
-            sc:sameAs "http://edamontology.org/data_3108" ] ;
+            sc:additionalType "http://edamontology.org/data_3108" ;
+            sc:encodingFormat "http://edamontology.org/format_3003" ;
+            sc:name "Experimental measurement" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:name "Pathway or network" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3176,
@@ -1825,7 +1809,7 @@ An important unanswered question in chromatin biology is the extent to which lon
     sc:url "https://bitbucket.org/creminslab/3dnetmod_method_v1.0_10_06_17" .
 
 <https://bio.tools/3dphenofish> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_0621,
@@ -1844,7 +1828,7 @@ An important unanswered question in chromatin biology is the extent to which lon
     sc:url "https://github.com/lyh24k/3DPhenoFish/tree/master" .
 
 <https://bio.tools/3dproin> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0602,
@@ -1860,7 +1844,7 @@ An important unanswered question in chromatin biology is the extent to which lon
     sc:url "http://bicompute.appspot.com/" .
 
 <https://bio.tools/3drobot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2814 ;
     sc:citation "pubmed:26471454" ;
@@ -1873,22 +1857,22 @@ An important unanswered question in chromatin biology is the extent to which lon
 
 <https://bio.tools/3drs> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1459" ;
-            sc:name "Nucleic acid structure" ;
-            sc:sameAs "http://edamontology.org/data_1459" ],
+            sc:additionalType "http://edamontology.org/data_3870" ;
+            sc:encodingFormat "http://edamontology.org/format_3910" ;
+            sc:name "Trajectory data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3870" ;
-            sc:name "Trajectory data" ;
-            sc:sameAs "http://edamontology.org/data_3870" ],
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein structure" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ] ;
+            sc:additionalType "http://edamontology.org/data_1459" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Nucleic acid structure" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0092,
@@ -1910,8 +1894,32 @@ An important unanswered question in chromatin biology is the extent to which lon
     sc:softwareVersion "1.0" ;
     sc:url "https://mmb.irbbarcelona.org/3dRS/" .
 
+<https://bio.tools/3dsnp> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web API" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_0749,
+        edam:topic_2885,
+        edam:topic_3295,
+        edam:topic_3940 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAB1008>,
+        "pmcid:PMC8728236",
+        "pubmed:34723317" ;
+    sc:description "3DSNP is a database linking noncoding Variants to 3D interacting genes. It is an integrated annotation database linking genome-wide noncoding SNPs and small INDELs to 3D interacting genes via chromatin loops." ;
+    sc:featureList edam:operation_0224,
+        edam:operation_3227,
+        edam:operation_3431,
+        edam:operation_3661 ;
+    sc:name "3DSNP" ;
+    sc:softwareHelp <https://www.omic.tech/wordpress/3dsnp-v2-0-api/>,
+        <https://www.omic.tech/wordpress/3dsnp-v2-0-tutorials/> ;
+    sc:url "https://omic.tech/3dsnpv2/" ;
+    biotools:primaryContact <https://orcid.org/0000-0001-8005-2705>,
+        <https://orcid.org/0000-0002-4895-5063> .
+
 <https://bio.tools/3dspectra> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -1932,7 +1940,7 @@ An important unanswered question in chromatin biology is the extent to which lon
     biotools:primaryContact "Sara Nasso" .
 
 <https://bio.tools/3dss> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -1955,7 +1963,7 @@ An important unanswered question in chromatin biology is the extent to which lon
     biotools:primaryContact "K Sekar" .
 
 <https://bio.tools/3dtf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0749,
@@ -1977,20 +1985,8 @@ An important unanswered question in chromatin biology is the extent to which lon
     sc:url "http://gene-regulation.com/pub/programs/3dtf/" ;
     biotools:primaryContact "Denitsa Alamanova" .
 
-<https://bio.tools/3f83gxmv57> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0780,
-        edam:topic_3382,
-        edam:topic_3810 ;
-    sc:citation <https://doi.org/10.1016/J.DIB.2019.104340>,
-        "pmcid:PMC6731382",
-        "pubmed:31516936" ;
-    sc:description "> MEDIUM CONFIDENCE! | > CORRECT NAME OF TOOL COULD ALSO BE 'Gujrat Citrus', 'citrus', 'citrus fruits', 'Gujrat' | A citrus fruits and leaves dataset for detection and classification of citrus diseases through machine learning | (1) In agriculture, plant diseases are primarily responsible for the reduction in production which causes economic losses | Published: 28 May 2019 : Version 2 : DOI: 10.17632/3f83gxmv57.2 | Rauf, Hafiz Tayyab; Saleem, Basharat ALi ; Lali, M" ;
-    sc:featureList edam:operation_3891 ;
-    sc:name "3f83gxmv57" ;
-    sc:url "https://data.mendeley.com/datasets/3f83gxmv57/2" .
-
 <https://bio.tools/3funmap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3053 ;
@@ -2006,8 +2002,28 @@ An important unanswered question in chromatin biology is the extent to which lon
     sc:softwareVersion "1.0" ;
     sc:url "http://statgen.psu.edu/software/3funmap.html" .
 
+<https://bio.tools/3gold> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0080,
+        edam:topic_0199,
+        edam:topic_3168,
+        edam:topic_3315 ;
+    sc:citation <https://doi.org/10.1186/S12859-022-04637-7>,
+        "pmcid:PMC8934446",
+        "pubmed:35307007" ;
+    sc:description "Optimized Levenshtein distance for clustering third-generation sequencing data." ;
+    sc:featureList edam:operation_0491,
+        edam:operation_3096,
+        edam:operation_3432 ;
+    sc:license "Not licensed" ;
+    sc:name "3GOLD" ;
+    sc:operatingSystem "Linux",
+        "Mac" ;
+    sc:url "https://github.com/roblogan6/3GOLD" .
+
 <https://bio.tools/3m-sars-cov-2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0634,
@@ -2031,7 +2047,7 @@ Liu, G., Carter, B., Bricken, T., Jain, S., Viard, M., Carrington, M., & Gifford
     sc:url "https://ahs2202.github.io/3M/" .
 
 <https://bio.tools/3matrix> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -2053,7 +2069,7 @@ Liu, G., Carter, B., Bricken, T., Jain, S., Viard, M., Carrington, M., & Gifford
     biotools:primaryContact "Douglas L. Brutlag" .
 
 <https://bio.tools/3mcor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3172,
@@ -2073,7 +2089,7 @@ Liu, G., Carter, B., Bricken, T., Jain, S., Viard, M., Carrington, M., & Gifford
     biotools:primaryContact <https://orcid.org/0000-0003-4163-1098> .
 
 <https://bio.tools/3motif> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -2096,7 +2112,7 @@ Liu, G., Carter, B., Bricken, T., Jain, S., Viard, M., Carrington, M., & Gifford
     biotools:primaryContact "Douglas L. Brutlag" .
 
 <https://bio.tools/3omics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0121,
@@ -2117,7 +2133,7 @@ Liu, G., Carter, B., Bricken, T., Jain, S., Viard, M., Carrington, M., & Gifford
     biotools:primaryContact "Yufeng Jane Tseng" .
 
 <https://bio.tools/3seq_2d> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654 ;
     sc:citation "pubmed:20874409" ;
@@ -2129,7 +2145,7 @@ Liu, G., Carter, B., Bricken, T., Jain, S., Viard, M., Carrington, M., & Gifford
     sc:url "http://www.bx.psu.edu/miller_lab/" .
 
 <https://bio.tools/3uss> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0099,
@@ -2149,7 +2165,7 @@ Liu, G., Carter, B., Bricken, T., Jain, S., Viard, M., Carrington, M., & Gifford
     biotools:primaryContact "Biocomputing Group" .
 
 <https://bio.tools/3v> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0099,
@@ -2171,20 +2187,8 @@ Liu, G., Carter, B., Bricken, T., Jain, S., Viard, M., Carrington, M., & Gifford
     sc:url "http://3vee.molmovdb.org" ;
     biotools:primaryContact "R. Neil" .
 
-<https://bio.tools/44c0a53ebb13f7fd5e2ddbced1a37f51> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3173,
-        edam:topic_3399,
-        edam:topic_3400 ;
-    sc:citation <https://doi.org/10.1101/755702> ;
-    sc:description "> MEDIUM CONFIDENCE! | > CORRECT NAME OF TOOL COULD ALSO BE 'men', 'sexes', 'late-sixties', 'forties' | Sexual-dimorphism in human immune system aging | Ucar Human Immune Aging Data" ;
-    sc:featureList edam:operation_3185,
-        edam:operation_3501,
-        edam:operation_3891 ;
-    sc:name "44c0a53ebb13f7fd5e2ddbced1a37f51" ;
-    sc:url "https://shinyapps.jax.org/44c0a53ebb13f7fd5e2ddbced1a37f51/" .
-
 <https://bio.tools/4DGenome> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_3173,
@@ -2203,8 +2207,31 @@ Liu, G., Carter, B., Bricken, T., Jain, S., Viard, M., Carrington, M., & Gifford
     sc:softwareHelp <https://4dgenome.research.chop.edu/About.html> ;
     sc:url "https://4dgenome.research.chop.edu" .
 
+<https://bio.tools/4d-nucleome-data-portal> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Bioinformatics portal",
+        "Web API" ;
+    sc:applicationSubCategory edam:topic_0621,
+        edam:topic_0654,
+        edam:topic_3173,
+        edam:topic_3382,
+        edam:topic_3940 ;
+    sc:citation <https://doi.org/10.1101/2021.10.14.464435> ;
+    sc:description "4D Nucleome Data Portal is a resource for searching and visualizing curated nucleomics data. The 4D Nucleome program aims to understand the principles behind the 3D organization of the nucleus in space and time (the 4th dimension). The 4DN Data Visualization Workspace allows users to create 1D or 2D genome displays. Registered users can save and share the displays they create. The Visualization Workspace is powered by HiGlass. The 4D Nucleome Data Portal hosts data generated by the 4DN Network and other reference nucleomics data sets, and an expanding tool set for open data processing and visualization." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_2421,
+        edam:operation_3431,
+        edam:operation_3454 ;
+    sc:isAccessibleForFree true ;
+    sc:name "4D Nucleome Data Portal" ;
+    sc:softwareHelp <https://data.4dnucleome.org/help/user-guide/faq>,
+        <https://data.4dnucleome.org/help/user-guide/getting-started>,
+        <https://data.4dnucleome.org/help/user-guide/programmatic-access> ;
+    sc:url "https://data.4dnucleome.org/" ;
+    biotools:primaryContact <http://orcid.org/0000-0001-9378-960X> .
+
 <https://bio.tools/4dnvestigator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0625,
@@ -2223,22 +2250,19 @@ Liu, G., Carter, B., Bricken, T., Jain, S., Viard, M., Carrington, M., & Gifford
 
 <https://bio.tools/4dxpress> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1033" ;
-            sc:name "Ensembl gene ID" ;
-            sc:sameAs "http://edamontology.org/data_1033" ],
+            sc:additionalType "http://edamontology.org/data_1796" ;
+            sc:name "Gene ID (FlyBase)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1796" ;
-            sc:name "Gene ID (FlyBase)" ;
-            sc:sameAs "http://edamontology.org/data_1796" ],
+            sc:additionalType "http://edamontology.org/data_1026" ;
+            sc:name "Gene symbol" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1026" ;
-            sc:name "Gene symbol" ;
-            sc:sameAs "http://edamontology.org/data_1026" ] ;
+            sc:additionalType "http://edamontology.org/data_1033" ;
+            sc:name "Ensembl gene ID" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0916" ;
-            sc:name "Gene report" ;
-            sc:sameAs "http://edamontology.org/data_0916" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0916" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Gene report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0623 ;
     sc:citation <https://doi.org/10.1093/nar/gkm797>,
@@ -2256,7 +2280,7 @@ Liu, G., Carter, B., Bricken, T., Jain, S., Viard, M., Carrington, M., & Gifford
     biotools:primaryContact "Yannick Haudry" .
 
 <https://bio.tools/4mCpred-EL> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3295,
@@ -2270,7 +2294,7 @@ Liu, G., Carter, B., Bricken, T., Jain, S., Viard, M., Carrington, M., & Gifford
     sc:url "http://thegleelab.org/4mCpred-EL" .
 
 <https://bio.tools/4mc-w2vec> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0654,
@@ -2285,7 +2309,7 @@ Liu, G., Carter, B., Bricken, T., Jain, S., Viard, M., Carrington, M., & Gifford
     biotools:primaryContact "Kil To Chong" .
 
 <https://bio.tools/4mcPred-IFL> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0749,
@@ -2309,7 +2333,7 @@ Liu, G., Carter, B., Bricken, T., Jain, S., Viard, M., Carrington, M., & Gifford
         "Shasha Luan" .
 
 <https://bio.tools/4mcnlp-deep> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3295,
@@ -2322,7 +2346,7 @@ Liu, G., Carter, B., Bricken, T., Jain, S., Viard, M., Carrington, M., & Gifford
     sc:url "http://nsclbio.jbnu.ac.kr/tools/4mCNLP-Deep/" .
 
 <https://bio.tools/4peaks> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:description "Allows viewing sequencing trace files, motif searching trimming, BLAST and exporting sequences." ;
@@ -2335,14 +2359,14 @@ Liu, G., Carter, B., Bricken, T., Jain, S., Viard, M., Carrington, M., & Gifford
 
 <https://bio.tools/4pipe4> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1234" ;
-            sc:name "Sequence set (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1234" ] ;
+            sc:additionalType "http://edamontology.org/data_1234" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Sequence set (nucleic acid)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0080,
@@ -2363,7 +2387,7 @@ Liu, G., Carter, B., Bricken, T., Jain, S., Viard, M., Carrington, M., & Gifford
     biotools:primaryContact "Francisco Pina Martins" .
 
 <https://bio.tools/4sale> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0081,
@@ -2382,7 +2406,7 @@ Liu, G., Carter, B., Bricken, T., Jain, S., Viard, M., Carrington, M., & Gifford
     sc:url "http://4sale.bioapps.biozentrum.uni-wuerzburg.de/index.html" .
 
 <https://bio.tools/4see> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0749,
@@ -2402,7 +2426,7 @@ Liu, G., Carter, B., Bricken, T., Jain, S., Viard, M., Carrington, M., & Gifford
     sc:url "https://github.com/TomSexton00/4See" .
 
 <https://bio.tools/4specid> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3053 ;
@@ -2421,7 +2445,7 @@ Liu, G., Carter, B., Bricken, T., Jain, S., Viard, M., Carrington, M., & Gifford
     sc:url "https://4specid.github.io" .
 
 <https://bio.tools/5_ORF_Extender> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3512 ;
     sc:citation <https://doi.org/10.1007/s00335-013-9498-3>,
@@ -2438,20 +2462,30 @@ Liu, G., Carter, B., Bricken, T., Jain, S., Viard, M., Carrington, M., & Gifford
     sc:softwareVersion "2.0.1" ;
     sc:url "http://apollo11.isto.unibo.it/software/5'_ORF_Extender/5'_ORF_Extender_2.0/" .
 
-<https://bio.tools/6HYRz> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0637,
-        edam:topic_3452,
-        edam:topic_3500 ;
-    sc:citation <https://doi.org/10.1038/S41598-019-47260-Y>,
-        "pmcid:PMC6662808",
-        "pubmed:31358795" ;
-    sc:description "> MEDIUM CONFIDENCE! | > CORRECT NAME OF TOOL COULD ALSO BE 'Taxonomy Arabian Temnothorax Mayr Formicidae', 'cybertype' | Myrmicinae) with description of a new species enhanced by x-ray microtomography | 3D model by Economolab (@arilab) | Temnothorax sp. New species from the Asir Mountains in Saudi Arabia (located at OIST: CASENT0790240) - Temnothorax sp. - 3D model by Economolab (@arilab) | November Challenge: Retro Electronics | Prize: 3 months of Sketchfab PRO + $100 | Orbit navigation Move camera: 1 finger drag or Left Mouse Button" ;
-    sc:featureList edam:operation_0337 ;
-    sc:name "6HYRz" ;
-    sc:url "https://skfb.ly/6HYRz" .
+<https://bio.tools/5nosoae> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0084,
+        edam:topic_3305,
+        edam:topic_3324,
+        edam:topic_3810 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAC423>,
+        "pmcid:PMC9252726",
+        "pubmed:35639518" ;
+    sc:description "A web server for nosocomial bacterial antibiogram investigation and epidemiology survey." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_2421,
+        edam:operation_3482 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "5NosoAE" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://nosoae.imst.nsysu.edu.tw" .
 
 <https://bio.tools/6ma-finder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_2640,
@@ -2465,7 +2499,7 @@ Liu, G., Carter, B., Bricken, T., Jain, S., Viard, M., Carrington, M., & Gifford
     sc:url "https://bioinfo.uth.edu/6mA_Finder" .
 
 <https://bio.tools/6ma-pred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3295 ;
     sc:citation <https://doi.org/10.7717/PEERJ.10813>,
@@ -2477,7 +2511,7 @@ Liu, G., Carter, B., Bricken, T., Jain, S., Viard, M., Carrington, M., & Gifford
     sc:url "http://39.100.246.211:5004/6mA_Pred/" .
 
 <https://bio.tools/6mapred-fo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_0780,
@@ -2495,17 +2529,8 @@ Liu, G., Carter, B., Bricken, T., Jain, S., Viard, M., Carrington, M., & Gifford
     sc:name "6mAPred-FO" ;
     sc:url "http://server.malab.cn/6mAPred-FO" .
 
-<https://bio.tools/744664v1> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0611,
-        edam:topic_2830,
-        edam:topic_3304 ;
-    sc:citation <https://doi.org/10.1101/744664> ;
-    sc:description "> LOW CONFIDENCE! | > CORRECT NAME OF TOOL COULD ALSO BE 'STORM' (bio.tools/storm), 'cholesterol-sensitive', 'mAb35-crosslinked', 'nAChRs' | Antibody-induced crosslinking and cholesterol-sensitive, anomalous diffusion of nicotinic acetylcholine receptors | Antibody-induced crosslinking immobilizes acetylcholine receptors. Mobile receptors exhibit anomalous, cholesterol-sensitive diffusion and clustering | Synaptic strength depends on the number of cell-surface neurotransmitter receptors in dynamic equilibrium with intracellular pools" ;
-    sc:name "744664v1" ;
-    sc:url "https://www.biorxiv.org/content/10.1101/744664v1" .
-
 <https://bio.tools/959_nematode_genomes> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0621,
@@ -2527,7 +2552,7 @@ Liu, G., Carter, B., Bricken, T., Jain, S., Viard, M., Carrington, M., & Gifford
     biotools:primaryContact "Mark Blaxter" .
 
 <https://bio.tools/9aaTAD> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0621,
         edam:topic_0749,
@@ -2541,25 +2566,8 @@ Liu, G., Carter, B., Bricken, T., Jain, S., Viard, M., Carrington, M., & Gifford
     sc:name "9aaTAD" ;
     sc:url "https://www.med.muni.cz/9aaTAD/index.php" .
 
-<https://bio.tools/A-CaMP> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0121,
-        edam:topic_0154,
-        edam:topic_2640,
-        edam:topic_3474 ;
-    sc:citation <https://doi.org/10.1080/07391102.2019.1708796>,
-        "pubmed:31870207" ;
-    sc:description """A Tool for Anti-Cancer and Antimicrobial Peptide Generation.
-
-Anti-cancer peptides (ACPs) play a vital role in the cell signaling process. Antimicrobial peptides (AMPs) provide immunity against pathogenic microbes, AMPs present activity against pathogenic microbes. Some of them are known to possess both anticancer and antimicrobial activity. However, so far, no tools have been developed that could predict potential ACPs from wild and mutated cancerous protein sequences in the numerous public databases. In the present study, we developed a A-CaMP tool that allows rapid fingerprinting of the anti-cancer and antimicrobial peptides, which play a crucial role in current bioinformatics research. Besides, we compared the performance and functionality of our A-CaMP tool with those of other methods available online. A-CaMP scans the target protein sequences provided by the user against the datasets.
-
-||| HOMEPAGE BROKEN!""" ;
-    sc:featureList edam:operation_3435,
-        edam:operation_3631 ;
-    sc:name "A-CaMP" ;
-    sc:url "http://weislab.com/WeiDOCK/include/content/A-CaMP/A-CaMPv1.1.pm" .
-
 <https://bio.tools/A-Lister> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0108,
@@ -2577,32 +2585,14 @@ Anti-cancer peptides (ACPs) play a vital role in the cell signaling process. Ant
     sc:name "A-Lister" ;
     sc:url "https://github.com/staslist/A-Lister" .
 
-<https://bio.tools/AACTT> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3377,
-        edam:topic_3390 ;
-    sc:citation <https://doi.org/10.1186/S13012-019-0951-X>,
-        "pmcid:PMC6896730",
-        "pubmed:31806037" ;
-    sc:description """Action, actor, context, target, time (AACTT).
-
-BACKGROUND:Designing implementation interventions to change the behaviour of healthcare providers and other professionals in the health system requires detailed specification of the behaviour(s) targeted for change to ensure alignment between intervention components and measured outcomes. Detailed behaviour specification can help to clarify evidence-practice gaps, clarify who needs to do what differently, identify modifiable barriers and enablers, design interventions to address these and ultimately provides an indicator of what to measure to evaluate an intervention's effect on behaviour change. An existing behaviour specification framework proposes four domains (Target, Action, Context, Time; TACT), but insufficiently clarifies who is performing the behaviour (i.e. the Actor).
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'interventions', 'Action Actor Context Target Time', 'intervention'""" ;
-    sc:featureList edam:operation_3435,
-        edam:operation_3799 ;
-    sc:name "AACTT" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31806037" .
-
 <https://bio.tools/AAI-profiler> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "AAI-profiler [1] is a fast homology search tool that takes a query proteome (protein sequences in FASTA format) as input and plots the AAI (Average Amino-acid Identity) values of species in the Uniprot database. AAI-profiler is powered by SANS [2] and the processing time for a bacterial proteome is a few minutes." ;
     sc:name "AAI-profiler" ;
     sc:url "http://ekhidna2.biocenter.helsinki.fi/AAI/" .
 
 <https://bio.tools/AAScatterPlot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0123,
         edam:topic_0199,
@@ -2623,40 +2613,8 @@ BACKGROUND:Designing implementation interventions to change the behaviour of hea
     sc:url "https://github.com/WhittakerLab/AAScatterPlot" ;
     biotools:primaryContact "Gary R. Whittaker" .
 
-<https://bio.tools/ABC-CT> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3334,
-        edam:topic_3360,
-        edam:topic_3379,
-        edam:topic_3384,
-        edam:topic_3407 ;
-    sc:citation <https://doi.org/10.1101/2019.12.18.19014548> ;
-    sc:description """Scientific Context, Study Design, and Progress towards Biomarker Qualification.
-
-Clinical research in neurodevelopmental disorders remains reliant upon clinician and caregiver measures. Limitations of these approaches indicate a need for objective, quantitative, and reliable biomarkers to advance clinical research. Extant research suggests the potential utility of multiple candidate biomarkers; however, effective application of these markers in trials requires additional understanding of replicability, individual differences, and intra-individual stability over time. The Autism Biomarkers Consortium for Clinical Trials (ABC-CT) is a multi-site study designed to investigate a battery of electrophysiological (EEG) and eye-tracking (ET) indices as candidate biomarkers for autism spectrum disorder (ASD).
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'Autism Biomarkers Consortium Clinical Trials', 'Biomarker Qualification'""" ;
-    sc:featureList edam:operation_3196,
-        edam:operation_3799 ;
-    sc:name "ABC-CT" ;
-    sc:url "https://doi.org/10.1101/2019.12.18.19014548" .
-
-<https://bio.tools/ABCD_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0602,
-        edam:topic_0659,
-        edam:topic_3360 ;
-    sc:citation <https://doi.org/10.1007/S13205-019-1888-0>,
-        "pmcid:PMC6722159",
-        "pubmed:31501752" ;
-    sc:description "> NAME (ABCD) SIMILAR TO (PUB. DIFFERENT) bio.tools/abcd (AbCD) | Alzheimer's disease Biomarkers Comprehensive Database | Genes, Proteins, Pathways and Drugs Database | ABCD is a Alzheimer's Disease Biomarker Comprehensive Database for Humans.It include the information for all the Genetic Parameters like Mitochondrial Genes, Polymorphic Genes (SNP's) , Transcription factors, Proteins, miRNAs, Associative pathway, and AD brain images. It provide the user To Search by Browsing through Different Mode" ;
-    sc:featureList edam:operation_2495,
-        edam:operation_3501 ;
-    sc:name "ABCD_autogenerated" ;
-    sc:url "http://www.bioinfoindia.org/abcd" .
-
 <https://bio.tools/ABCD_database> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0749,
@@ -2669,7 +2627,7 @@ Clinical research in neurodevelopmental disorders remains reliant upon clinician
     sc:url "https://web.expasy.org/abcd/" .
 
 <https://bio.tools/ABCharge> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0593 ;
     sc:citation <https://doi.org/10.1021/ACSOMEGA.9B00270>,
         "pmcid:PMC6648237",
@@ -2679,7 +2637,7 @@ Clinical research in neurodevelopmental disorders remains reliant upon clinician
     sc:url "https://github.com/troelsring/ABCharge" .
 
 <https://bio.tools/ABI_software> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3334 ;
     sc:description "Experimental Brain Computer Interface Software for the ModularEEG." ;
@@ -2692,7 +2650,7 @@ Clinical research in neurodevelopmental disorders remains reliant upon clinician
         "Pedro Ortega" .
 
 <https://bio.tools/ABMDA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_0659,
@@ -2711,7 +2669,7 @@ Clinical research in neurodevelopmental disorders remains reliant upon clinician
     biotools:primaryContact "Xing Chen" .
 
 <https://bio.tools/ABPS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3408,
         edam:topic_3474 ;
@@ -2731,18 +2689,18 @@ Clinical research in neurodevelopmental disorders remains reliant upon clinician
 
 <https://bio.tools/ABRicate> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1234" ;
-            sc:name "Sequence set (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1234" ],
+            sc:additionalType "http://edamontology.org/data_1234" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence set (nucleic acid)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3494" ;
-            sc:name "DNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3494" ] ;
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:encodingFormat "http://edamontology.org/format_1936" ;
+            sc:name "DNA sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0916" ;
-            sc:name "Gene report" ;
-            sc:sameAs "http://edamontology.org/data_0916" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0916" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Gene report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3301 ;
@@ -2758,78 +2716,8 @@ Clinical research in neurodevelopmental disorders remains reliant upon clinician
     sc:softwareVersion "0.9.8" ;
     sc:url "https://github.com/tseemann/abricate" .
 
-<https://bio.tools/ABS50> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3305,
-        edam:topic_3322,
-        edam:topic_3400,
-        edam:topic_3421 ;
-    sc:citation <https://doi.org/10.1016/J.PCRJ.2006.04.145>,
-        "pmcid:PMC6730761" ;
-    sc:description """Study of resources in asthma and COPD in the community of Madrid (Spain).
-
-Introduction:Respiratory medicine is developing in primary care. We describe the resources available. In a second phase, we will study health results. Aims and objectives:To learn about resources (infrastructure and process) related with Asthma and COPD in the public centers of the Community of Madrid (Spain). Subjects and methodology: A descriptive, cross-sectional study. A postal survey addressed (2 mailings) to the leaders of all the health centers (227), between November (2000) and April (2001). Response: 156 (68.7%). A previous study over 44 coordinators (nominal group), added 10 items and changed 4.
-
-||| HOMEPAGE MISSING!.
-
-||| NAME (ABS50) SIMILAR TO (PUB. DIFFERENT) bio.tools/abs (ABS).
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'COPD', 'pneumology', 'oximeter', 'CPRE'""" ;
-    sc:featureList edam:operation_2428,
-        edam:operation_3454 ;
-    sc:name "ABS50" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6730761/" .
-
-<https://bio.tools/ABS68> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3305,
-        edam:topic_3322,
-        edam:topic_3421 ;
-    sc:citation <https://doi.org/10.1016/J.PCRJ.2006.04.162>,
-        "pmcid:PMC6730778" ;
-    sc:description """Use of a call centre to conduct clinical research.
-
-Introduction:Call centres are increasingly utilised to provide health-care services and advice. Their use in research to monitor and track individuals with long-term health conditions such as asthma without subjecting them to regular clinic visits has yet to be validated. Aim:As part of an asthma health outcomes study a call centre conducted monthly interviews with patients over one year. The relationship between the research team and the call centre, as well as data quality, was reviewed. Method:344 patients from 31 randomly selected UK practices were called on a monthly basis.
-
-||| HOMEPAGE MISSING!.
-
-||| NAME (ABS68) SIMILAR TO (PUB. DIFFERENT) bio.tools/abs (ABS).
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'monthly', 'interviews', 'interview', 'monthly interviews'""" ;
-    sc:featureList edam:operation_3435 ;
-    sc:name "ABS68" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6730778/" .
-
-<https://bio.tools/ABS72> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0634,
-        edam:topic_3305,
-        edam:topic_3322,
-        edam:topic_3418,
-        edam:topic_3421 ;
-    sc:citation <https://doi.org/10.1016/J.PCRJ.2006.04.165>,
-        "pmcid:PMC6730781" ;
-    sc:description """A survey on pediatirc asthma management in primary care in Mallorca (Spain).
-
-Introduction:Asthma is the most frequent long term disease in children. The prevalence in our environment is approximately 10% [1]. The knowledge of the real situation of professionals in different primary health centres could help to encourage a future program to increase the quality of management of asthmatic children. Aims and objectives:To obtain information on the real situation on asthma management among medical professionals in paediatric primary care in Mallorca.
-
-||| HOMEPAGE MISSING!.
-
-||| NAME (ABS72) SIMILAR TO (PUB. DIFFERENT) bio.tools/abs (ABS).
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'paediatric asthma', 'paediatric', 'Mallorca', 'salbutamol'""" ;
-    sc:name "ABS72" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6730781/" .
-
-<https://bio.tools/ABUS> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0602,
-        edam:topic_2640,
-        edam:topic_3382 ;
-    sc:citation <https://doi.org/10.1109/TMI.2019.2936500>,
-        "pubmed:31442972" ;
-    sc:description "> MEDIUM CONFIDENCE! | Deeply-Supervised Networks with Threshold Loss for Cancer Detection in Automated Breast Ultrasound | 3D-DUnet-DDS-TM to detection breast cancer in abus" ;
-    sc:name "ABUS" ;
-    sc:url "https://github.com/nawang0226/abus_code" .
-
 <https://bio.tools/AB_SA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_2885,
         edam:topic_3305,
@@ -2847,7 +2735,7 @@ Introduction:Asthma is the most frequent long term disease in children. The prev
     sc:url "https://github.com/lguillier/AB_SA" .
 
 <https://bio.tools/ACACIA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0632,
@@ -2868,7 +2756,7 @@ Introduction:Asthma is the most frequent long term disease in children. The prev
     biotools:primaryContact "Pablo S.C. Santos" .
 
 <https://bio.tools/ACCOST> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3169,
@@ -2880,7 +2768,7 @@ Introduction:Asthma is the most frequent long term disease in children. The prev
     sc:url "https://bitbucket.org/noblelab/accost" .
 
 <https://bio.tools/ACES> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3295,
@@ -2902,7 +2790,7 @@ Introduction:Asthma is the most frequent long term disease in children. The prev
     sc:url "https://github.com/GrabherrGroup/ACES" .
 
 <https://bio.tools/ACID-docking> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0202,
@@ -2919,39 +2807,8 @@ Introduction:Asthma is the most frequent long term disease in children. The prev
     sc:name "ACID" ;
     sc:url "http://chemyang.ccnu.edu.cn/ccb/server/ACID" .
 
-<https://bio.tools/ACID_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0154,
-        edam:topic_0202,
-        edam:topic_0209,
-        edam:topic_2275,
-        edam:topic_3373 ;
-    sc:citation <https://doi.org/10.1186/S13321-019-0394-Z>,
-        "pmcid:PMC6882193" ;
-    sc:description """a free tool for drug repurposing using consensus inverse docking strategy.
-
-Auto in silico Consensus Inverse Docking(ACID) is a web server mainly for drug repurposing based on the consensus inverse docking method, which is designed to evaluate the binding affinities between each protein and the given small molecule. ACID is open to the public and shows great potential.
-
-||| NAME EQUAL TO (PUB. DIFFERENT) bio.tools/acid""" ;
-    sc:featureList edam:operation_0337,
-        edam:operation_0482,
-        edam:operation_3899 ;
-    sc:name "ACID_autogenerated" ;
-    sc:url "http://chemyang.ccnu.edu.cn/ccb/server/ACID" .
-
-<https://bio.tools/ACPI> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0602,
-        edam:topic_3337,
-        edam:topic_3384 ;
-    sc:citation <https://doi.org/10.1101/741595> ;
-    sc:description "> LOW CONFIDENCE! | > HOMEPAGE BROKEN! | > CORRECT NAME OF TOOL COULD ALSO BE 'parcels', 'parcellating', 'brain-behaviour', 'widely-accepted' | Optimising network modelling methods for fMRI | Abstract A major goal of neuroimaging studies is to develop predictive models to analyse the relationship between whole brain functional connectivity patterns and behavioural traits. However, there is no single widely-accepted standard pipeline for analyzing functional connectivity. The common procedure for designing functional connectivity based predictive models entails three main steps: parcellating the brain, estimating the interaction between defined parcels, and lastly, using these integrated associations between brain parcels as features fed to a classifier for predicting non-imaging variables e.g., behavioural traits, demographics, emotional measures, etc" ;
-    sc:featureList edam:operation_2425,
-        edam:operation_3660,
-        edam:operation_3745 ;
-    sc:name "ACPI" ;
-    sc:url "http://projects.nitrc.org/indi/ACPI/html/index.html" .
-
 <https://bio.tools/ACPP> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0091 ;
     sc:author <https://orcid.org/0000-0001-5145-0384> ;
@@ -2965,7 +2822,7 @@ Auto in silico Consensus Inverse Docking(ACID) is a web server mainly for drug r
     sc:url "https://github.com/brsaran/ACPP" .
 
 <https://bio.tools/ACPred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0749,
@@ -2984,7 +2841,7 @@ Auto in silico Consensus Inverse Docking(ACID) is a web server mainly for drug r
     sc:url "http://codes.bio/acpred/" .
 
 <https://bio.tools/ACPred-Fuse> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -2999,13 +2856,13 @@ Auto in silico Consensus Inverse Docking(ACID) is a web server mainly for drug r
     sc:url "http://server.malab.cn/ACPred-Fuse/Server.html" .
 
 <https://bio.tools/ACSN> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "A multi-scale resource of biological maps to study disease mechanisms." ;
     sc:name "Atlas of Cancer Signalling Network (ACSN)" ;
     sc:url "https://acsn.curie.fr/ACSN2/ACSN2.html" .
 
 <https://bio.tools/ACTINN> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3170,
         edam:topic_3474 ;
@@ -3017,7 +2874,7 @@ Auto in silico Consensus Inverse Docking(ACID) is a web server mainly for drug r
     sc:url "https://github.com/mafeiyang/ACTINN" .
 
 <https://bio.tools/ACTOR> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0634,
         edam:topic_3170,
@@ -3034,7 +2891,7 @@ actor is an R package which takes transcript expression as input and uses a late
     sc:url "https://github.com/mccabes292/actor" .
 
 <https://bio.tools/ACTman> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0769 ;
     sc:citation <https://doi.org/10.1016/J.JSAMS.2019.11.009>,
@@ -3045,20 +2902,8 @@ OBJECTIVES:To introduce a novel software-library called Actigraphy Manager (ACTm
     sc:name "ACTman" ;
     sc:url "https://github.com/compsy/ACTman" .
 
-<https://bio.tools/ADAMTS7_E373Q_ADAMTS7_WT_ADAMTS7> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0121,
-        edam:topic_0154,
-        edam:topic_3407 ;
-    sc:citation "pmcid:PMC6698788" ;
-    sc:description "> HOMEPAGE MISSING! | > CORRECT NAME OF TOOL COULD ALSO BE 'E373Q ADAMTS7 WT ADAMTS7 E373Q', 'ADAMTS7 E373Q ADAMTS7', 'Luciferase ADAMTS7 E373Q ADAMTS7', 'ADAMTS7 WT ADAMTS7 E373Q' | Introduction: The identification of corticotropin-releasing hormone (CRH) has led to the discovery of a growing family of ligands and receptors. CRH receptor 1 (CRHR1) and CRHR2 are mammalian G-protein coupled receptors (GPCRs) with high affinity for CRH and the CRH family of peptides. CRHR1 is predominantly expressed in the brain and plays a vital role in the hypothalamic-pituitary-adrenal (HPA) axis stress responses by secreting adrenal corticotropic hormone (ACTH). CRHR2 is predominantly expressed in the periphery and urocortin 2 (UCN2), a CRHR2-specific ligand, has been involved in the regulation of glucose metabolism. Ucn-2, a 38 aa peptide, shows reasonable homology between rat and human CRH (∼34%), Ucn-1 (43%) and Ucn-3 (37 40%)" ;
-    sc:featureList edam:operation_3638,
-        edam:operation_3639,
-        edam:operation_3649 ;
-    sc:name "ADAMTS7 E373Q ADAMTS7 WT ADAMTS7" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6698788/" .
-
 <https://bio.tools/ADAPTABLE> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3168 ;
@@ -3074,18 +2919,8 @@ Antimicrobial peptides (AMPs) are part of the innate immune response to pathogen
     sc:name "ADAPTABLE" ;
     sc:url "http://gec.u-picardie.fr/adaptable/" .
 
-<https://bio.tools/ADAPTE> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0108,
-        edam:topic_3303 ;
-    sc:citation <https://doi.org/10.14341/PROBL10100>,
-        "pubmed:31566316" ;
-    sc:description "> MEDIUM CONFIDENCE! | > CORRECT NAME OF TOOL COULD ALSO BE 'AGREE', 'commentaries' | [Three ways to develop clinical guidelines. ADAPTE and AGREE GRS procedures] | ADAPTE Resource Toolkit for Guideline Adaptation Version 2.0 — Guidelines International Network | ADAPTE Resource Toolkit for Guideline Adaptation Version 2.0 | We are sorry, but signing in with LinkedIn is not possible at this time" ;
-    sc:featureList edam:operation_3237 ;
-    sc:name "ADAPTE" ;
-    sc:url "https://www.g-i-n.net/document-store/working-groups-documents/adaptation/adapte-resource-toolkit-guideline-adaptation-2-0.pdf/view" .
-
 <https://bio.tools/ADAPTIVE> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3172,
         edam:topic_3474 ;
@@ -3100,7 +2935,7 @@ Antimicrobial peptides (AMPs) are part of the innate immune response to pathogen
     sc:url "http://www.bic.kyoto-u.ac.jp/pathway/tools/ADAPTIVE" .
 
 <https://bio.tools/ADAPTS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3170,
@@ -3121,7 +2956,7 @@ Antimicrobial peptides (AMPs) are part of the innate immune response to pathogen
     biotools:primaryContact "Samuel A. Danziger" .
 
 <https://bio.tools/ADDO> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0625,
         edam:topic_0769,
@@ -3142,7 +2977,7 @@ Additivity and dominance are the major genetic components underlying variations
     sc:url "https://github.com/LeileiCui/ADDO" .
 
 <https://bio.tools/ADEPTUS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0602,
@@ -3161,7 +2996,7 @@ Additivity and dominance are the major genetic components underlying variations
     biotools:primaryContact "Ron Shamir" .
 
 <https://bio.tools/ADHD> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3305,
         edam:topic_3334,
@@ -3180,7 +3015,7 @@ Additivity and dominance are the major genetic components underlying variations
     sc:url "https://ufrgs.br/prodah/adhd-calculator/" .
 
 <https://bio.tools/ADMMBO> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_2269 ;
     sc:citation "pmcid:PMC6890416",
@@ -3191,84 +3026,8 @@ There exist many problems in science and engineering that involve optimization o
     sc:name "ADMMBO" ;
     sc:url "https://github.com/SetarehAr/ADMMBO" .
 
-<https://bio.tools/ADNI-3> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0634,
-        edam:topic_3384,
-        edam:topic_3444 ;
-    sc:citation <https://doi.org/10.3389/FNCOM.2019.00054>,
-        "pmcid:PMC6700386",
-        "pubmed:31456676" ;
-    sc:description "> CORRECT NAME OF TOOL COULD ALSO BE 'AD N', 'associated dementia', 'thevirtualbrain.org neuroinformatics', 'Virtual Brain' | Linking Molecular Pathways and Large-Scale Computational Modeling to Assess Candidate Disease Mechanisms and Pharmacodynamics in Alzheimer's Disease | Alzheimer's Disease Neuroimaging Initiative | Alzheimer’s Disease Neuroimaging Initiative | ADNI3 began in 2016 and includes scientists at 59 research centers in the United States and Canada. Between 1070-2000 participants will be enrolled: approximately 700-800 rollover participants from ADNI2 and 370-1200 newly enrolled subjects. Clinical, cognitive, imaging, biomarker and genetic characteristics will be assessed across three cohorts: Cognitively normal, MCI and mild AD dementia | The Alzheimer’s Disease Neuroimaging Initiative (ADNI) unites researchers with study data as they work to define the progression of Alzheimer’s disease (AD)" ;
-    sc:featureList edam:operation_3629,
-        edam:operation_3891 ;
-    sc:name "ADNI-3" ;
-    sc:softwareHelp <http://adni.loni.usc.edu/wp-content/themes/freshnews-dev-v2/documents/clinical/ADNI3_Protocol.pdf> ;
-    sc:url "http://adni.loni.usc.edu" .
-
-<https://bio.tools/ADNIGO> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0634,
-        edam:topic_3172,
-        edam:topic_3384,
-        edam:topic_3407,
-        edam:topic_3444 ;
-    sc:citation <https://doi.org/10.1038/S41597-019-0181-8>,
-        "pmcid:PMC6797798",
-        "pubmed:31624257" ;
-    sc:description """Bile acids targeted metabolomics and medication classification data in the ADNI1 and ADNIGO/2 cohorts.
-
-Alzheimer's Disease Neuroimaging Initiative.
-
-Alzheimer’s Disease Neuroimaging Initiative.
-
-The Alzheimer’s Disease Neuroimaging Initiative (ADNI) unites researchers with study data as they work to define the progression of Alzheimer’s disease (AD). ADNI researchers collect, validate and utilize data, including MRI and PET images, genetics, cognitive tests, CSF and blood biomarkers as predictors of the disease. Study resources and data from the North American ADNI study are available through this website, including Alzheimer’s disease patients, mild cognitive impairment subjects, and elderly controls.
-
-Click below to learn more or to join the ADNI study as a participant.
-
-||| COMMON LINK WITH (PUB. & NAME DIFFERENT) bio.tools/LONI-QC (LONI.USC.EDU), bio.tools/ADNI-3 (ADNI.LONI.USC.EDU ; LONI.USC.EDU).
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'ADNI1', 'ADNI'""" ;
-    sc:featureList edam:operation_2428,
-        edam:operation_3435,
-        edam:operation_3799 ;
-    sc:name "ADNIGO" ;
-    sc:url "http://adni.loni.ucla.edu/" .
-
-<https://bio.tools/ADR> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0202,
-        edam:topic_0209,
-        edam:topic_3377,
-        edam:topic_3379,
-        edam:topic_3474 ;
-    sc:citation <https://doi.org/10.1002/CPT.1750>,
-        <https://doi.org/10.1093/BIB/BBZ140>,
-        "pubmed:31838499",
-        "pubmed:31868917" ;
-    sc:description """Broad-Spectrum Profiling of Drug Safety via Learning Complex Network.
-
-A survey on adverse drug reaction studies.
-
-A comparison of machine learning models in adverse drug side effect prediction.
-
-Duc Anh Nguyen, Canh Hao Nguyen and Hiroshi Mamitsuka.
-
-Adverse Drug Reaction Classification System.
-
-An adverse drug reaction (ADR) is described by the World Health Organization (WHO) as a 'response to a medicine which is noxious and unintended, and which occurs at doses normally used in man.' ADRs are sometimes called side effects.
-
-Create and activate a python environment using anaconda:.
-
-For better access experience, the webserver may take several minutes to initiate the working evironment at your first visit.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'survey adverse drug reaction studies'""" ;
-    sc:featureList edam:operation_0478,
-        edam:operation_2426,
-        edam:operation_3435,
-        edam:operation_3439 ;
-    sc:name "ADR" ;
-    sc:url "http://www.bio-add.org/ADRAlert/" .
-
 <https://bio.tools/ADRAlert> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0202,
@@ -3289,7 +3048,7 @@ For better access experience, the webserver may take several minutes to initiate
     sc:url "http://www.bio-add.org/ADRAlert/" .
 
 <https://bio.tools/ADS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0091,
@@ -3305,7 +3064,7 @@ For better access experience, the webserver may take several minutes to initiate
     sc:url "http://ekhidna2.biocenter.helsinki.fi/ADS/" .
 
 <https://bio.tools/ADS-HCSpark> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2885,
         edam:topic_3168,
@@ -3324,20 +3083,8 @@ For better access experience, the webserver may take several minutes to initiate
     sc:softwareHelp <https://github.com/SCUT-CCNL/ADS-HCSpark/blob/master/README.md> ;
     sc:url "https://github.com/SCUT-CCNL/ADS-HCSpark.git" .
 
-<https://bio.tools/AEDs> a sc:SoftwareApplication ;
-    sc:citation "pubmed:31581184" ;
-    sc:description """Availability of automated external defibrillators in Hamilton, New Zealand.
-
-BACKGROUND:Last year, there were 2,000 out-of-hospital cardiac arrests (OHCA) in New Zealand, 74% received CPR but only 5.1% accessed an automated external defibrillator (AED). The average survival rate of OHCA is 13%. The aim of this study was to visit all 50 AED locations shown on www.hamiltoncentral.co.nz to assess their true availability and visibility to the public in the event of an OHCA. METHOD:All premises were visited and the first staff member encountered was asked if they were aware an AED was onsite, its location, hours of availability, if restricted access applied and whether it had been used. RESULTS:Of the 50 locations, three sites no longer exist and two AEDs were listed twice. Therefore, only 45 AEDs exist. Two sites had grossly inaccurate locations. Three AEDs (7%) were continuously available.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'Hamilton'""" ;
-    sc:name "AEDs" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31581184" .
-
 <https://bio.tools/AESA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_0749,
@@ -3352,19 +3099,8 @@ BACKGROUND:Last year, there were 2,000 out-of-hospital cardiac arrests (OHCA) in
     sc:name "Advanced Expression Survival Analysis (AESA)" ;
     sc:url "http://innovebioinfo.com/Databases/TCGA_Mutation_ExpressionDB/Mutationdb_Search5.php" .
 
-<https://bio.tools/AETIONOMY> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0634,
-        edam:topic_3399,
-        edam:topic_3577 ;
-    sc:citation <https://doi.org/10.1101/19004804> ;
-    sc:description "Cross-Sectional Study Aimed at validating a new taxonomy of Neurodegenerative Diseases | Organising Knowledge about Neurodegenerative Disease Mechanisms for the Improvement of Drug Development and Therapy | Final AETIONOMY Symposium on Neurodegeneration and General Assembly | The Final AETIONOMY Symposium on Neurodegenerative Research of Dementia, Alzheimer's and Parkinson's Disease and General Assembly took place on November 29 and 30, 2018 at the Congresshotel Collegium Leoninum, Bonn, Germany" ;
-    sc:featureList edam:operation_3435,
-        edam:operation_3891 ;
-    sc:name "AETIONOMY" ;
-    sc:url "http://www.aetionomy.eu" .
-
 <https://bio.tools/AFCMHeatMap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_3169,
         edam:topic_3170,
@@ -3382,7 +3118,7 @@ Generating heatmaps of genetic datasets is a 2D graphical visualization of data
     sc:url "https://mohammadtarek.shinyapps.io/AFCMHeatMap/" .
 
 <https://bio.tools/AFND> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0199,
@@ -3399,7 +3135,7 @@ Generating heatmaps of genetic datasets is a 2D graphical visualization of data
     sc:url "http://www.allelefrequencies.net/" .
 
 <https://bio.tools/AGAT> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:description """Another Gff Analysis Toolkit (AGAT)
 Suite of tools to handle gene annotations in any GTF/GFF format.""" ;
@@ -3411,7 +3147,7 @@ Suite of tools to handle gene annotations in any GTF/GFF format.""" ;
     sc:url "https://github.com/NBISweden/AGAT" .
 
 <https://bio.tools/AGONOTES> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
         edam:topic_0621,
@@ -3429,7 +3165,7 @@ Welcome to AgoNotes home page! AGONOTES is an online service tool to identify Ar
     sc:url "http://i.uestc.edu.cn/agonotes/" .
 
 <https://bio.tools/AGS_ACN> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3174,
         edam:topic_3399,
         edam:topic_3697 ;
@@ -3444,60 +3180,8 @@ Welcome to AgoNotes home page! AGONOTES is an online service tool to identify Ar
     sc:name "AGS ACN" ;
     sc:url "https://github.com/pereiramemo/AGS-and-ACN-tools" .
 
-<https://bio.tools/AHPND> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0154,
-        edam:topic_3170,
-        edam:topic_3308 ;
-    sc:citation <https://doi.org/10.1186/S13099-019-0319-4>,
-        "pmcid:PMC6660963",
-        "pubmed:31372182" ;
-    sc:description "> MEDIUM CONFIDENCE! | > HOMEPAGE MISSING! | > CORRECT NAME OF TOOL COULD ALSO BE 'Vp AHPND' | Differential transcriptome analysis of the disease tolerant Madagascar-Malaysia crossbred black tiger shrimp, Penaeus monodon hepatopancreas in response to acute hepatopancreatic necrosis disease (AHPND) infection | Background:Penaeus monodon is the second most widely cultured marine shrimp species in the global shrimp aquaculture industry. However, the growth of P. monodon production has been constantly impaired by disease outbreaks. Recently, there is a lethal bacterial infection, known as acute hepatopancreatic necrosis disease (AHPND) caused by Vibrio parahaemolyticus AHPND strain (Vp AHPND), which led to mass mortalities in P. monodon. Unfortunately, there is still insufficient knowledge about the underlying immune response of P. monodon upon AHPND infection" ;
-    sc:featureList edam:operation_3501,
-        edam:operation_3891 ;
-    sc:name "AHPND" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31372182" .
-
-<https://bio.tools/AHRQ> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3301,
-        edam:topic_3377,
-        edam:topic_3403 ;
-    sc:citation <https://doi.org/10.1093/OFID/OFZ359.111>,
-        "pmcid:PMC6809119" ;
-    sc:description """1881. The Agency for Healthcare Research and Quality (AHRQ) Safety Program for Improving Antibiotic Use.
-
-AbstractBackgroundThe AHRQ Safety Program for Improving Antibiotic Use aims to improve antibiotic (abx) use in acute, long-term, and outpatient care settings by enhancing abx stewardship programs (ASP) and engaging frontline providers to incorporate stewardship into daily abx decision-making, with an emphasis on viewing appropriate prescribing as a patient safety issue. We report on the impact of implementation of the Acute Care Safety Program on abx use and Clostridioides difficile in a cohort of US hospitals. MethodsThe Acute Care Safety Program was implemented from December 2017 to November 2018. At least one unit from each hospital participated.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'abx', 'difficile LabID', 'LabID', 'abx prescribing'""" ;
-    sc:featureList edam:operation_2409,
-        edam:operation_3482,
-        edam:operation_3803 ;
-    sc:name "AHRQ" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6809119/" .
-
-<https://bio.tools/AHSURED> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0749,
-        edam:topic_3303,
-        edam:topic_3500 ;
-    sc:citation <https://doi.org/10.3389/FVETS.2019.00426>,
-        "pmcid:PMC6890601",
-        "pubmed:31828080" ;
-    sc:description """Development of Reporting Guidelines for Animal Health Surveillance-AHSURED.
-
-The objective of the present project is to produce a set of reporting guidelines to facilitate consistent and credible reporting of surveillance activities and their outcomes.
-
-The rationale behind it is that by moving towards more output−based standards for surveillance, and allowing greater flexibility in surveillance design, there will be an increased need for transparency about design features as well as how the activities are actually implemented.
-
-The choice of a Wiki format was motivated by the fact that refinements and improvements of the guidelines are both expected and welcome, so feel free to contribute by sending your comments to ahsured@sva.se.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'Surveillance-AHSURED', 'Animal Health Surveillance-AHSURED'""" ;
-    sc:featureList edam:operation_3907 ;
-    sc:name "AHSURED" ;
-    sc:url "https://github.com/SVA-SE/AHSURED/wiki" .
-
 <https://bio.tools/AICD> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3336,
@@ -3522,7 +3206,7 @@ The choice of a Wiki format was motivated by the fact that refinements and impro
         "Zaoyuan Kuang" .
 
 <https://bio.tools/AIDE> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3170,
         edam:topic_3512 ;
@@ -3541,7 +3225,7 @@ AIDE is a statistical method which identifies full-length mRNA isoforms from a n
     sc:url "https://github.com/Vivianstats/AIDE" .
 
 <https://bio.tools/AIKYATAN> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_0749,
         edam:topic_3173,
@@ -3559,7 +3243,7 @@ BACKGROUND:The data deluge can leverage sophisticated ML techniques for function
     sc:url "https://bitbucket.org/cellsandmachines/aikyatan" .
 
 <https://bio.tools/AIVAR> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3474,
@@ -3583,7 +3267,7 @@ BACKGROUND:The data deluge can leverage sophisticated ML techniques for function
         "Yujian Shi" .
 
 <https://bio.tools/AI_TI-RADS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3384,
@@ -3602,7 +3286,7 @@ BACKGROUND:The data deluge can leverage sophisticated ML techniques for function
     biotools:primaryContact "Mateusz Buda" .
 
 <https://bio.tools/AJIA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0102,
@@ -3615,7 +3299,7 @@ BACKGROUND:The data deluge can leverage sophisticated ML techniques for function
     sc:url "https://github.com/lyotvincent/AJIA" .
 
 <https://bio.tools/ALACD> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0203,
         edam:topic_0659,
@@ -3633,13 +3317,13 @@ ALACD is to get the drug-lncRNA assoications via bi-level optimization and decod
     sc:url "https://github.com/wangyc82/ALACD-v1" .
 
 <https://bio.tools/ALIENNESS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "Rapid detection of candidate horizontal gene transfers across the tree of life." ;
     sc:name "ALIENNESS" ;
     sc:url "http://alienness.sophia.inra.fr/cgi/index.cgi" .
 
 <https://bio.tools/ALOHA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:citation <https://doi.org/10.1186/S12911-019-0857-1>,
         "pmcid:PMC6686235",
         "pubmed:31391091" ;
@@ -3649,7 +3333,7 @@ ALACD is to get the drug-lncRNA assoications via bi-level optimization and decod
     sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31391091" .
 
 <https://bio.tools/ALS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0625,
         edam:topic_3474 ;
@@ -3664,7 +3348,7 @@ ALACD is to get the drug-lncRNA assoications via bi-level optimization and decod
     sc:url "https://github.com/byin-cwi/ALS-Deeplearning" .
 
 <https://bio.tools/ALTIS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3384,
         edam:topic_3421,
         edam:topic_3452 ;
@@ -3675,7 +3359,7 @@ ALACD is to get the drug-lncRNA assoications via bi-level optimization and decod
     sc:url "http://lids.ic.unicamp.br/downloads" .
 
 <https://bio.tools/AMDA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3174,
@@ -3697,7 +3381,7 @@ ALACD is to get the drug-lncRNA assoications via bi-level optimization and decod
     biotools:primaryContact "Xiang Zhan" .
 
 <https://bio.tools/AMELIE> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3068,
@@ -3712,14 +3396,14 @@ ALACD is to get the drug-lncRNA assoications via bi-level optimization and decod
 
 <https://bio.tools/AMICI> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ] ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:encodingFormat "http://edamontology.org/format_2585" ;
+            sc:name "Pathway or network" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3870" ;
-            sc:name "Trajectory data" ;
-            sc:sameAs "http://edamontology.org/data_3870" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3870" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Trajectory data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2259 ;
     sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAB227>,
@@ -3743,7 +3427,7 @@ The interface was designed to provide routines for efficient gradient computatio
         "Fabian Fröhlich" .
 
 <https://bio.tools/AMON> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3172,
         edam:topic_3366,
@@ -3769,7 +3453,7 @@ AMON includes two scripts. extract_ko_genome_from_organism.py takes a KEGG organ
     sc:url "https://github.com/lozuponelab/AMON" .
 
 <https://bio.tools/AMR> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3301,
         edam:topic_3305,
@@ -3785,7 +3469,7 @@ AMON includes two scripts. extract_ko_genome_from_organism.py takes a KEGG organ
     sc:url "https://msberends.github.io/AMR/" .
 
 <https://bio.tools/AMi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0611,
         edam:topic_0749,
         edam:topic_2828 ;
@@ -3798,7 +3482,7 @@ AMON includes two scripts. extract_ko_genome_from_organism.py takes a KEGG organ
     sc:url "https://doi.org/10.1107/S2053230X19009853" .
 
 <https://bio.tools/ANCIS-Pytorch> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3304,
@@ -3821,7 +3505,7 @@ AMON includes two scripts. extract_ko_genome_from_organism.py takes a KEGG organ
         "Qiaoying Huang" .
 
 <https://bio.tools/ANDIS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0130,
         edam:topic_0736,
@@ -3843,14 +3527,14 @@ AMON includes two scripts. extract_ko_genome_from_organism.py takes a KEGG organ
 
 <https://bio.tools/ANISEED> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2042" ;
-            sc:name "Evidence" ;
-            sc:sameAs "http://edamontology.org/data_2042" ] ;
+            sc:additionalType "http://edamontology.org/data_2042" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Evidence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2042" ;
-            sc:name "Evidence" ;
-            sc:sameAs "http://edamontology.org/data_2042" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2042" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Evidence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Ontology",
         "Web API",
@@ -3896,22 +3580,8 @@ iii) a Genomicus gene synteny browser.""" ;
     biotools:primaryContact <https://orcid.org/0000-0001-7247-6460>,
         <https://orcid.org/0000-0003-4925-2009> .
 
-<https://bio.tools/ANK3> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0602,
-        edam:topic_2885,
-        edam:topic_3517 ;
-    sc:citation <https://doi.org/10.12688/F1000RESEARCH.19571.2>,
-        "pmcid:PMC6662680",
-        "pubmed:31372216" ;
-    sc:description "> VERY_LOW CONFIDENCE! | > HOMEPAGE BROKEN! | > CORRECT NAME OF TOOL COULD ALSO BE 'PoO', 'PoOxE', 'triads', 'lip' | A genome-wide scan of cleft lip triads identifies parent-of-origin interaction effects between ANK3 and maternal smoking, and between ARHGEF10 and alcohol consumption | Background: Although both genetic and environmental factors have been reported to influence the risk of isolated cleft lip with or without cleft palate (CL P), the exact mechanisms behind CL P are still largely unaccounted for. We recently developed new methods to identify parent-of-origin (PoO) interactions with environmental exposures (PoOxE) and applied them to families with children born with isolated cleft palate only. Here, we used the same genome-wide association study (GWAS) dataset and methodology to screen for PoOxE effects in the larger sample of CL P triads" ;
-    sc:featureList edam:operation_0487,
-        edam:operation_0488,
-        edam:operation_3196 ;
-    sc:name "ANK3" ;
-    sc:url "https://github.com/oeh041/A-genome-wide-scan-of-cleft-lip-triads-identifies-parent-of-origin-interaction-effects-between-ANK3" .
-
 <https://bio.tools/ANMF> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3336,
         edam:topic_3379,
         edam:topic_3474 ;
@@ -3924,7 +3594,7 @@ iii) a Genomicus gene synteny browser.""" ;
     sc:url "https://github.com/MortySn/ANMF" .
 
 <https://bio.tools/ANN-Glycolysis-Flux-Prediction> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0821,
@@ -3946,7 +3616,7 @@ iii) a Genomicus gene synteny browser.""" ;
     biotools:primaryContact <https://orcid.org/0000-0002-3568-9595> .
 
 <https://bio.tools/ANN-SoLo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -3966,7 +3636,7 @@ iii) a Genomicus gene synteny browser.""" ;
     biotools:primaryContact "Wout Bittremieux" .
 
 <https://bio.tools/ANPELA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3172,
@@ -3990,7 +3660,7 @@ iii) a Genomicus gene synteny browser.""" ;
         "Yunxia Wang" .
 
 <https://bio.tools/AOE> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3170,
@@ -4011,7 +3681,7 @@ iii) a Genomicus gene synteny browser.""" ;
     sc:url "https://aoe.dbcls.jp/" .
 
 <https://bio.tools/AOP> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2840,
         edam:topic_3343 ;
@@ -4023,7 +3693,7 @@ iii) a Genomicus gene synteny browser.""" ;
     sc:url "https://aopwiki.org/" .
 
 <https://bio.tools/AOPERA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2840,
         edam:topic_3314 ;
@@ -4034,27 +3704,8 @@ iii) a Genomicus gene synteny browser.""" ;
     sc:name "AOPERA" ;
     sc:url "https://igbb.github.io/AOPERA_HTML" .
 
-<https://bio.tools/AOPs> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0154,
-        edam:topic_0602,
-        edam:topic_2840,
-        edam:topic_3172,
-        edam:topic_3378 ;
-    sc:citation <https://doi.org/10.14573/ALTEX.1908151>,
-        "pubmed:31707421" ;
-    sc:description """Integrating adverse outcome pathways (AOPs) and high throughput in vitro assays for better risk evaluations.
-
-The emergence of high throughput in vitro assays has the potential to significantly improve toxicological evaluations and lead to more efficient, accurate, and less animal-intensive testing. However, directly using all available in vitro assays in a model is usually impractical and inefficient. On the other hand, mechanistic knowledge has always been critical for toxicological evaluations and should not be ignored even with the increasing availability of data. In this paper, we illustrate a promising approach to integrating mechanistic knowledge with multiple data sources for in vitro assays, using drug-induced liver injury (DILI) as an example. The adverse outcome pathway (AOP) framework was used as a source for mechanistic knowledge and as a selection tool for high throughput predictors.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'AOPwiki'""" ;
-    sc:featureList edam:operation_3659 ;
-    sc:name "AOPs" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31707421" .
-
 <https://bio.tools/AOPs-SVM> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0154,
         edam:topic_3474 ;
@@ -4073,7 +3724,7 @@ Input your sequence:(FASTA format)""" ;
     sc:url "http://server.malab.cn/AOPs-SVM/index.jsp" .
 
 <https://bio.tools/AOtools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3318,
         edam:topic_3382 ;
@@ -4086,7 +3737,7 @@ Input your sequence:(FASTA format)""" ;
     sc:url "https://github.com/AOtools/aotools" .
 
 <https://bio.tools/AP3> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -4106,23 +3757,8 @@ Input your sequence:(FASTA format)""" ;
     biotools:primaryContact "Cheng Chang",
         "Zhiqiang Gao" .
 
-<https://bio.tools/APA> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0749,
-        edam:topic_3170,
-        edam:topic_3512 ;
-    sc:citation <https://doi.org/10.1093/NAR/GKZ781>,
-        "pmcid:PMC6821429",
-        "pubmed:31501864" ;
-    sc:description "> VERY_LOW CONFIDENCE! | Cell-type-specific analysis of alternative polyadenylation using single-cell transcriptomics data | This is a package and a shell script for alternative polyadenylation (APA) analysis of 3' tag single-cell RNA-seq data | This is a package and a shell script for alternative polyadenylation (APA) analysis of 3' tag single-cell RNA-seq data. The shell script \"scAPAscript.R\" takes as input BAM files generated by 10x 3' tag RNA seq pipline and the results of cell clustering" ;
-    sc:featureList edam:operation_0428,
-        edam:operation_2495,
-        edam:operation_3222 ;
-    sc:license "BSD-3-Clause" ;
-    sc:name "APA" ;
-    sc:url "https://github.com/ElkonLab/scAPA" .
-
 <https://bio.tools/APAatlas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0203,
         edam:topic_0625,
@@ -4139,30 +3775,8 @@ The APA atlas refers to " A lternative P oly A denylation atlas in human tissues
     sc:name "APAatlas" ;
     sc:url "https://hanlab.uth.edu/apa/" .
 
-<https://bio.tools/APD3> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0077,
-        edam:topic_0121,
-        edam:topic_0154,
-        edam:topic_3390,
-        edam:topic_3697 ;
-    sc:citation <https://doi.org/10.3389/FMICB.2019.02261>,
-        "pmcid:PMC6795089",
-        "pubmed:31649628" ;
-    sc:description """Peptide Antimicrobials in the Eco-Active Intestinal Chemosphere.
-
-The Antimicrobial Peptide Database (APD) contains 3156 antimicrobial peptides from six kingdoms (349 bacteriocins/peptide antibiotics from bacteria, 5 from archaea, 8 from protists, 20 from fungi, 352 from plants, and 2342 from animals, including some synthetic peptides) with the following activity:.
-
-Antibacterial peptides; Antibiofilm peptides; Anti-MRSA peptides;.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'Microcins Enterobacteriaceae', 'microcins', 'intestinal', 'chemosphere'""" ;
-    sc:featureList edam:operation_0407,
-        edam:operation_2478,
-        edam:operation_3646 ;
-    sc:name "APD3" ;
-    sc:url "http://aps.unmc.edu/AP/" .
-
 <https://bio.tools/APEC> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0749,
@@ -4181,7 +3795,7 @@ Antibacterial peptides; Antibiofilm peptides; Anti-MRSA peptides;.
     biotools:primaryContact "Bin Li" .
 
 <https://bio.tools/APHIRM_toolkit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3318,
         edam:topic_3416,
@@ -4194,7 +3808,7 @@ Antibacterial peptides; Antibiofilm peptides; Anti-MRSA peptides;.
     sc:url "http://www.aphirm.org.au" .
 
 <https://bio.tools/APIS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2269,
         edam:topic_2885,
@@ -4212,7 +3826,7 @@ Parentage assignment package. Parentage assignment is performed based on observe
     sc:url "https://cran.r-project.org/package=APIS" .
 
 <https://bio.tools/APPAGATO> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3500 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btw223> ;
@@ -4228,22 +3842,8 @@ Parentage assignment package. Parentage assignment is performed based on observe
     biotools:primaryContact "Federico Busato",
         "Nicola Bombieri" .
 
-<https://bio.tools/APPLES_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0196,
-        edam:topic_3174,
-        edam:topic_3293 ;
-    sc:citation <https://doi.org/10.1093/SYSBIO/SYZ063>,
-        "pubmed:31545363" ;
-    sc:description "> NAME EQUAL TO (PUB. DIFFERENT) bio.tools/apples | Scalable Distance-based Phylogenetic Placement with or without Alignments | distance based phylogenetic placement | APPLES stands for Accurate Phylogenetic Placement with LEast Squares and addresses the problem of phylogenetic placement of DNA and protein sequences into an already existing reference tree. APPLES is a command-line tool and it can run on Linux, Mac OSX, and Windows" ;
-    sc:featureList edam:operation_0545,
-        edam:operation_0547,
-        edam:operation_3478 ;
-    sc:license "MIT" ;
-    sc:name "APPLES_autogenerated" ;
-    sc:url "http://github.com/balabanmetin/apples" .
-
 <https://bio.tools/APSiC> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0203,
         edam:topic_2229,
@@ -4262,7 +3862,7 @@ A web portal using the Shiny framework in R has been developed to visualize rank
     sc:url "https://apsic.shinyapps.io/APSiC/" .
 
 <https://bio.tools/AQRNA-seq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0659,
         edam:topic_0749,
@@ -4281,7 +3881,7 @@ This repo contains python processing scripts for AQRNA-seq data analysis. The sc
     sc:url "https://github.com/dedonlab/aqrnaseq" .
 
 <https://bio.tools/AQUA-DUCT> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0602 ;
@@ -4301,7 +3901,7 @@ This repo contains python processing scripts for AQRNA-seq data analysis. The sc
     sc:url "http://www.aquaduct.pl/" .
 
 <https://bio.tools/AQUA-MER> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_3068,
@@ -4317,7 +3917,7 @@ AQUA-MER is useful for researchers who want to investigate mercury speciation in
     sc:url "https://aquamer.ornl.gov" .
 
 <https://bio.tools/AR-Pred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0176,
         edam:topic_0749,
@@ -4337,7 +3937,7 @@ AQUA-MER is useful for researchers who want to investigate mercury speciation in
     biotools:primaryContact "Sambit Mishra" .
 
 <https://bio.tools/ARA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3382,
         edam:topic_3474 ;
@@ -4356,26 +3956,8 @@ ARA stands for Accurate, Reliable and Active. Any method that works on patient d
     sc:name "ARA" ;
     sc:url "https://github.com/animgoeth/ARA-CNN" .
 
-<https://bio.tools/ARDS> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0121,
-        edam:topic_3322,
-        edam:topic_3384,
-        edam:topic_3403 ;
-    sc:citation <https://doi.org/10.1017/CTS.2018.141>,
-        "pmcid:PMC6798517" ;
-    sc:description """2303 Trauma-related acute respiratory distress syndrome (ARDS) in India.
-
-OBJECTIVES SPECIFIC AIMS: Aim 1: To determine the true incidence of trauma-related acute respiratory distress syndrome (ARDS) in India. We propose to perform a prospective observational study to determine the incidence of ARDS in India. Aim 2: To perform a preliminary assessment of risk factors for ARDS in the Indian trauma population. We will leverage these findings against the global ARDS data to provide a foundation for further interventional studies. Aim 3: To evaluate the current management strategies and patient outcomes from ARDS in trauma subjects admitted to the Jai Prakash Narayan Apex Trauma Center (JPNATC). These findings will identify areas in need of practice-based performance improvement in ARDS therapies in India.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'ARDS trauma', 'incidence ARDS trauma'""" ;
-    sc:featureList edam:operation_3799 ;
-    sc:name "ARDS" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6798517/" .
-
 <https://bio.tools/ARDaP> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3174,
         edam:topic_3575,
         edam:topic_3673 ;
@@ -4387,21 +3969,8 @@ OBJECTIVES SPECIFIC AIMS: Aim 1: To determine the true incidence of trauma-relat
     sc:name "ARDaP" ;
     sc:url "http://github.com/dsarov/ARDaP" .
 
-<https://bio.tools/ARG> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3174,
-        edam:topic_3301,
-        edam:topic_3474 ;
-    sc:citation <https://doi.org/10.1186/S40168-019-0735-1>,
-        "pmcid:PMC6716844",
-        "pubmed:31466530" ;
-    sc:description "> LOW CONFIDENCE! | Identification of discriminatory antibiotic resistance genes among environmental resistomes using extremely randomized tree algorithm | Extract discriminatory ARGs from metagenomics samples" ;
-    sc:featureList edam:operation_3891 ;
-    sc:license "BSD-2-Clause" ;
-    sc:name "ARG" ;
-    sc:url "https://github.com/gaarangoa/ExtrARG" .
-
 <https://bio.tools/ARGA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0632,
         edam:topic_3168,
@@ -4421,7 +3990,7 @@ OBJECTIVES SPECIFIC AIMS: Aim 1: To determine the true incidence of trauma-relat
     biotools:primaryContact "Ye Deng" .
 
 <https://bio.tools/ARMOR> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3170,
@@ -4444,43 +4013,8 @@ OBJECTIVES SPECIFIC AIMS: Aim 1: To determine the true incidence of trauma-relat
     biotools:primaryContact <https://orcid.org/0000-0002-3048-5518>,
         <https://orcid.org/0000-0003-3833-2169> .
 
-<https://bio.tools/ARMR> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3334,
-        edam:topic_3337,
-        edam:topic_3384,
-        edam:topic_3400,
-        edam:topic_3577 ;
-    sc:citation <https://doi.org/10.1111/HEAD.13688>,
-        "pubmed:31755111" ;
-    sc:description """Research Methods and Baseline Data for an Initial Patient Cohort.
-
-The American Registry for Migraine Research (ARMR).
-
-The American Migraine Foundation (AMF) is a non-profit organization dedicated to the advancement of research and awareness surrounding migraine.
-
-The American Migraine Foundation (AMF) is a non-profit organization dedicated to the advancement of research and awareness surrounding migraine.
-
-Learn more about the American Registry for Migraine Research.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'American Registry Migraine Research'""" ;
-    sc:featureList edam:operation_3431 ;
-    sc:name "ARMR" ;
-    sc:url "http://www.armr.org" .
-
-<https://bio.tools/ARSA-16S> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0632,
-        edam:topic_3168,
-        edam:topic_3174 ;
-    sc:citation <https://doi.org/10.20944/PREPRINTS201909.0170.V1> ;
-    sc:description "> MEDIUM CONFIDENCE! | > HOMEPAGE MISSING! | A New and Conceptually Different Approach for 16S-based Taxonomic Profiling | Here we describe ARSA-16S, a tool and accompanying reference database for the analysis of bacterial 16S amplicons. Among other features, ARSA-16S is based on a new model, approach, and algorithm for sequence-level assignment of reads understood as probability distributions, assigns reads individually, and is designed with non-overlapping amplicons covering two non-contiguous regions. A new set of primers for the amplification and sequencing of the V4 and V6 regions is also provided" ;
-    sc:featureList edam:operation_0308,
-        edam:operation_2495,
-        edam:operation_3460 ;
-    sc:name "ARSA-16S" ;
-    sc:url "https://doi.org/10.20944/PREPRINTS201909.0170.V1" .
-
 <https://bio.tools/ASA-PS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_2269,
         edam:topic_3318,
@@ -4498,7 +4032,7 @@ BACKGROUND:The American Society of Anesthesiologists Physical Status (ASA-PS) cl
     sc:url "https://s-spire-clintools.shinyapps.io/ASA_PS_Estimator/" .
 
 <https://bio.tools/ASA24> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0152,
@@ -4516,10 +4050,10 @@ BACKGROUND:The American Society of Anesthesiologists Physical Status (ASA-PS) cl
 
 <https://bio.tools/ASAAAP> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3497" ;
-            sc:name "DNA sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_3497" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3497" ;
+            sc:encodingFormat "http://edamontology.org/format_3590" ;
+            sc:name "DNA sequence (raw)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0622,
@@ -4546,7 +4080,7 @@ BACKGROUND:The American Society of Anesthesiologists Physical Status (ASA-PS) cl
     biotools:primaryContact <http://orcid.org/0000-0003-4216-2721> .
 
 <https://bio.tools/ASD-DiagNet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3360,
         edam:topic_3419,
         edam:topic_3444,
@@ -4563,57 +4097,39 @@ This repository contains the implementation of ASD-DiagNet algorithm""" ;
     sc:name "ASD-DiagNet" ;
     sc:url "https://github.com/pcdslab/ASD-DiagNet" .
 
-<https://bio.tools/ASFV> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0196,
-        edam:topic_0632,
-        edam:topic_3168,
-        edam:topic_3305,
-        edam:topic_3810 ;
-    sc:citation <https://doi.org/10.1128/JCM.01104-19>,
-        "pmcid:PMC6935939",
-        "pubmed:31694969" ;
-    sc:description """Rapid Sequence-Based Characterization of African Swine Fever Virus by Use of the Oxford Nanopore MinION Sequence Sensing Device and a Companion Analysis Software Tool.
-
-https://www.ncbi.nlm.nih.gov/pubmed/?term=31694969.
-
-O'Donnell VK, Grau FR, Mayr GA, Sturgill Samayoa, Dodd KA, Barrette RW., RAPID SEQUENCE-BASED CHARACTERIZATION OF AFRICAN SWINE FEVER VIRUS USING THE OXFORD NANOPORE MINION SEQUENCE SENSING DEVICE AND A COMPANION ANALYSIS SOFTWARE TOOL. J Clin Microbiol. 2019 Nov 6. pii: JCM.01104-19. doi: 10.1128/JCM.01104-19.
-
-Foreign Animal Disease Diagnostic Laboratory, National Veterinary Services Laboratories, Animal and Plant Health Inspection Service, United States Department of Agriculture, Plum Island Animal Disease Center, New York.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'ASF-FAST', 'swine fever', 'swine'""" ;
-    sc:featureList edam:operation_0310,
-        edam:operation_3185,
-        edam:operation_3200,
-        edam:operation_3211 ;
-    sc:license "MIT" ;
-    sc:name "ASFV" ;
-    sc:url "https://github.com/rwbarrette/ASFV_MinION_RapidAssembler" .
-
 <https://bio.tools/ASHLAR> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
-    sc:additionalType "Command-line tool" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Library",
+        "Web application" ;
     sc:applicationSubCategory edam:topic_0749,
+        edam:topic_1317,
         edam:topic_2640,
         edam:topic_3360,
         edam:topic_3382,
-        edam:topic_3400 ;
+        edam:topic_3400,
+        edam:topic_3500 ;
     sc:citation <https://doi.org/10.1038/S41597-019-0332-Y>,
+        <https://doi.org/10.1093/BIOINFORMATICS/BTAC544>,
         "pmcid:PMC6917801",
-        "pubmed:31848351" ;
+        "pubmed:31848351",
+        "pubmed:35972352" ;
     sc:description """Alignment by Simultaneous Harmonization of Layer/Adjacency Registration.
 Highly multiplexed immunofluorescence images and single-cell data of immune markers in tonsil and lung cancer.""" ;
     sc:featureList edam:operation_0337,
         edam:operation_3435,
         edam:operation_3443 ;
+    sc:isAccessibleForFree true ;
     sc:license "MIT" ;
     sc:name "ASHLAR" ;
     sc:operatingSystem "Linux",
         "Mac",
         "Windows" ;
-    sc:url "https://github.com/jmuhlich/ashlar" .
+    sc:softwareHelp <https://labsyspharm.github.io/ashlar/instructions/installation.html> ;
+    sc:url "https://labsyspharm.github.io/ashlar/" .
 
 <https://bio.tools/ASJA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3320,
         edam:topic_3512 ;
@@ -4627,44 +4143,8 @@ Highly multiplexed immunofluorescence images and single-cell data of immune mark
     sc:name "ASJA" ;
     sc:url "https://github.com/HuangLab-Fudan/ASJA" .
 
-<https://bio.tools/ASL> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3384,
-        edam:topic_3401,
-        edam:topic_3444 ;
-    sc:citation <https://doi.org/10.1097/PR9.0000000000000750>,
-        "pmcid:PMC6690842",
-        "pubmed:31406952" ;
-    sc:description "Imaging Clinically Relevant Pain States Using Arterial Spin Labeling | The Center for Functional Neuroimaging at the University of Pennsylvania provides unification for currently distributed medical center efforts in physiological and clinical brain imaging and advance the general interests of the brain imaging community through targeted methods development, symposia and colloquia, handling of regulatory issues, and fund-raising efforts | Updated manual, ASL MoCo code, and asl_perf_subtract.m. Major new features include: | asl_perf_subtract.m has been updated with new parameters (T1b, T2wm, Rwm-blood) from the latest literature. CBF quantification for PASL using voxelwise M0 value has been updated. Please see the document therein for the details | Made a new version for SPM12. Major new features include: | 1) wraper functors for most of the processing steps," ;
-    sc:featureList edam:operation_3799 ;
-    sc:name "ASL" ;
-    sc:url "https://cfn.upenn.edu/~zewang/ASLtbx.php" .
-
-<https://bio.tools/ASM> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0102,
-        edam:topic_0749,
-        edam:topic_2885,
-        edam:topic_3295,
-        edam:topic_3674 ;
-    sc:citation <https://doi.org/10.1101/815605> ;
-    sc:description """Allele-specific DNA methylation is increased in cancers and its dense mapping in normal plus neoplastic cells increases the yield of disease-associated regulatory SNPs.
-
-Human hg19 chr10:122795171-122795171 UCSC Genome Browser v391.
-
-UCSC Genome Browser on Human Feb. 2009 (GRCh37/hg19) Assembly.
-
-chr10:122,795,171-122,795,171 1 bp.
-
-Click on a feature for details. Click or drag in the base position track to zoom in. Click side bars for track options. Drag side bars or labels up or down to reorder tracks. Drag tracks left or right to new position. Press "?" for keyboard shortcuts""" ;
-    sc:featureList edam:operation_0308,
-        edam:operation_0484,
-        edam:operation_0487,
-        edam:operation_3196,
-        edam:operation_3435 ;
-    sc:name "ASM" ;
-    sc:url "https://genome.ucsc.edu/s/TyckoLab/High%20Confidence%20ASM" .
-
 <https://bio.tools/ASM-Clust> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0610,
         edam:topic_0623,
@@ -4682,7 +4162,7 @@ ASM-Clust is implemented in bash with two helper scripts in perl, and will take
     sc:url "https://github.com/dspeth/ASM_clust" .
 
 <https://bio.tools/ASNR> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0610,
@@ -4704,7 +4184,7 @@ ASM-Clust is implemented in bash with two helper scripts in perl, and will take
     biotools:primaryContact "Shweta Bansal" .
 
 <https://bio.tools/ASRD> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0659,
@@ -4721,7 +4201,7 @@ ASM-Clust is implemented in bash with two helper scripts in perl, and will take
     sc:url "http://ipf.sustech.edu.cn/pub/asrd" .
 
 <https://bio.tools/ATBdiscrimination> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0820,
         edam:topic_3324,
         edam:topic_3384 ;
@@ -4742,7 +4222,7 @@ Please Cite: Jiangpeng Wu, Jun Bai, Wei Wang, Lili Xi, Pengyi Zhang, Jingfeng La
     sc:url "http://lishuyan.lzu.edu.cn/ATB/ATBdiscrimination.html" .
 
 <https://bio.tools/ATC-NLSP> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0202,
         edam:topic_0209,
         edam:topic_3474 ;
@@ -4756,7 +4236,7 @@ Please Cite: Jiangpeng Wu, Jun Bai, Wei Wang, Lili Xi, Pengyi Zhang, Jingfeng La
     sc:url "https://github.com/dqwei-lab/ATC" .
 
 <https://bio.tools/ATEN> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3474 ;
     sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTZ563>,
@@ -4769,23 +4249,8 @@ Please Cite: Jiangpeng Wu, Jun Bai, Wei Wang, Lili Xi, Pengyi Zhang, Jingfeng La
     sc:name "ATEN" ;
     sc:url "https://github.com/ningshi/ATEN" .
 
-<https://bio.tools/ATLAS_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3174,
-        edam:topic_3308,
-        edam:topic_3517 ;
-    sc:citation <https://doi.org/10.1038/S41588-019-0481-0>,
-        <https://doi.org/10.1101/737528>,
-        "pubmed:31427789" ;
-    sc:description "> NAME (ATLAS) SIMILAR TO (PUB. DIFFERENT) bio.tools/atlas2 (Atlas2), bio.tools/atlas (Atlas) | > COMMON LINK WITH (PUB. & NAME DIFFERENT) bio.tools/pymzml (GITHUB.COM) | > CORRECT NAME OF TOOL COULD ALSO BE 'GWASs' | a Snakemake workflow for assembly, annotation, and genomic binning of metagenome sequence data | A global overview of pleiotropy and genetic architecture in complex traits | ATLAS - Three commands to start analysing your metagenome data | Genome wide association study ATLAS | Welcome to the Atlas of GWAS Summary Statistics | This atlas is a database of publicly available GWAS summary statistics | All databases and dependencies are installed on the fly in the directory db-dir | Free document hosting provided by Read the Docs" ;
-    sc:featureList edam:operation_0310,
-        edam:operation_0362,
-        edam:operation_3798 ;
-    sc:license "BSD-3-Clause" ;
-    sc:name "ATLAS_autogenerated" ;
-    sc:url "https://atlas.ctglab.nl" .
-
 <https://bio.tools/AUPA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3421,
         edam:topic_3474 ;
@@ -4796,7 +4261,7 @@ Please Cite: Jiangpeng Wu, Jun Bai, Wei Wang, Lili Xi, Pengyi Zhang, Jingfeng La
     sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31468306" .
 
 <https://bio.tools/AUTALASSO> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3517,
@@ -4816,7 +4281,7 @@ Please Cite: Jiangpeng Wu, Jun Bai, Wei Wang, Lili Xi, Pengyi Zhang, Jingfeng La
     biotools:primaryContact "Patrik Waldmann" .
 
 <https://bio.tools/AVADA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0218,
         edam:topic_3474 ;
@@ -4831,7 +4296,7 @@ Please Cite: Jiangpeng Wu, Jun Bai, Wei Wang, Lili Xi, Pengyi Zhang, Jingfeng La
     sc:url "http://bejerano.stanford.edu/AVADA/" .
 
 <https://bio.tools/AVADx> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3512,
         edam:topic_3676 ;
@@ -4845,153 +4310,8 @@ Please Cite: Jiangpeng Wu, Jun Bai, Wei Wang, Lili Xi, Pengyi Zhang, Jingfeng La
     sc:name "AVA,Dx" ;
     sc:url "https://bromberglab.org/project/avadx/" .
 
-<https://bio.tools/AVAILABILITYA> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0602,
-        edam:topic_0749,
-        edam:topic_3169 ;
-    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTZ687>,
-        "pubmed:31504203" ;
-    sc:description "> LOW CONFIDENCE! | > HOMEPAGE MISSING! | > CORRECT NAME OF TOOL COULD ALSO BE 'TFARM' (bio.tools/tfarm), 'MOTIVATION:Genome' | Association rule mining to identify transcription factor interactions in genomic regions | MOTIVATION:Genome regulatory networks have different layers and ways to modulate cellular processes, such as cell differentiation, proliferation and adaptation to external stimuli. Transcription factors and other chromatin associated proteins act as combinatorial protein complexes that control gene transcription. Thus, identifying functional interaction networks among these proteins is a fundamental task to understand the genome regulation framework. RESULTS:We developed a novel approach to infer interactions among transcription factors in user selected genomic regions, by combining the computation of association rules and of a novel Importance Index on ChIP-seq data sets" ;
-    sc:name "AVAILABILITY:A" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31504203" .
-
-<https://bio.tools/AVAILABILITYDistanced> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0632,
-        edam:topic_3512,
-        edam:topic_3697 ;
-    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTZ668>,
-        "pubmed:31504180" ;
-    sc:description "> MEDIUM CONFIDENCE! | > CORRECT NAME OF TOOL COULD ALSO BE 'Distanced' | Accurate estimation of microbial sequence diversity with Distanced | Distanced is a bioinformatics tool that estimates diversity of microbes. Specifically, it estimates the diversity of ribosomal DNA sequences within microbial communities. Estimating diversity of microbes is a challenge because errors in sequence create false sequences and inflate diversity. Distanced overcomes this problem by correcting values of mean pairwise distance, a measure of within-sample diversity, for the expected increase after sequencing | Distanced requires a set a DNA sequence reads in fastq format. A set of reference sequences in fasta format is optional. If reference sequences are provided, Distanced will report the actual diversity of the DNA sequences, providing a check on accuracy" ;
-    sc:featureList edam:operation_0289,
-        edam:operation_3192,
-        edam:operation_3237 ;
-    sc:name "AVAILABILITY:Distanced" ;
-    sc:url "https://github.com/thackmann/Distanced" .
-
-<https://bio.tools/AVAILABILITYElmeri> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0196 ;
-    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTZ663>,
-        "pubmed:31504206" ;
-    sc:description "> MEDIUM CONFIDENCE! | > CORRECT NAME OF TOOL COULD ALSO BE 'Elmeri', 'Elmeri improves', 'Elmeri required', 'Rmaps' | Fast and Accurate Correction of Optical Mapping Data via Spaced Seeds | Elmeri is a program to correct errors in raw optical map data (Rmaps) | L. Salmela, K. Mukherjee, S.J. Puglisi, M.D. Muggli, and C. Boucher: Fast and accurate correction of optical mapping data with spaced seeds" ;
-    sc:featureList edam:operation_0524,
-        edam:operation_3216,
-        edam:operation_3472 ;
-    sc:license "AGPL-3.0" ;
-    sc:name "AVAILABILITY:Elmeri" ;
-    sc:url "https://github.com/LeenaSalmela/Elmeri" .
-
-<https://bio.tools/AVAILABILITYRibotricer> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0108,
-        edam:topic_0203,
-        edam:topic_0621,
-        edam:topic_3170,
-        edam:topic_3512 ;
-    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTZ878>,
-        "pubmed:31750902" ;
-    sc:description """Accurate detection of short and long active ORFs using Ribo-seq data.
-
-A tool for accurately detecting actively translating ORFs from Ribo-seq data.
-
-We highly recommend that you install ribotricer via conda:.
-
-conda install -c bioconda ribotricer.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'ribotricer', 'ribotricer-results'""" ;
-    sc:featureList edam:operation_0436,
-        edam:operation_3359,
-        edam:operation_3454 ;
-    sc:license "GPL-3.0" ;
-    sc:name "AVAILABILITY:Ribotricer" ;
-    sc:url "https://github.com/smithlabcode/ribotricer" .
-
-<https://bio.tools/AVAILABILITYUMLSmapper> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0091,
-        edam:topic_0218,
-        edam:topic_3303,
-        edam:topic_3474 ;
-    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTZ853>,
-        "pubmed:31730202" ;
-    sc:description """Cross-lingual Semantic Annotation of Biomedical Literature.
-
-× Looking for UMLSmapper's demo? Follow this link.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'annotation transfer'""" ;
-    sc:featureList edam:operation_2422,
-        edam:operation_3778 ;
-    sc:name "AVAILABILITY:UMLSmapper" ;
-    sc:url "https://snlt.vicomtech.org/umlsmapper" .
-
-<https://bio.tools/AVAILABILITYVAPOR> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0102,
-        edam:topic_0196,
-        edam:topic_3673 ;
-    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTZ814>,
-        "pubmed:31693070" ;
-    sc:description """Influenza Classification from Short Reads with VAPOR Facilitates Robust Mapping Pipelines and Zoonotic Strain Detection for Routine Surveillance Applications.
-
-VAPOR is a tool for classification of Influenza samples from raw short read sequence data for downstream bioinformatics analysis. VAPOR is provided with a fasta file of full-length sequences (> 20,000) for a given segment, a set of reads, and attempts to retrieve a reference that is closest to the sample strain.
-
-The VAPOR module executable script can be installed with pip:.
-
-sudo pip3 install git+https://github.com/connor-lab/vapor.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'VAPOR', 'VAPOR Facilitates', 'VAPOR retrieved', 'VAPOR Facilitates Robust'""" ;
-    sc:featureList edam:operation_0524,
-        edam:operation_2422,
-        edam:operation_3198 ;
-    sc:license "GPL-3.0" ;
-    sc:name "AVAILABILITY:VAPOR" ;
-    sc:url "https://github.com/connor-lab/vapor" .
-
-<https://bio.tools/AVAILABILITYZING> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_2275 ;
-    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTZ623>,
-        "pubmed:31393558" ;
-    sc:description "> MEDIUM CONFIDENCE! | > CORRECT NAME OF TOOL COULD ALSO BE 'ZING', 'template-free' | Integrating ab initio and template-based algorithms for protein-protein complex structure prediction | ZING is a method to identify and combine high-confidence protein-protein complex structure predictions of a template-free method (ZDOCK) with a template-based method (SPRING) | python ZING.py [-h] [-zdir zdres] [-sdir spres] | -h, --help show this help message and exit" ;
-    sc:featureList edam:operation_0476,
-        edam:operation_2492,
-        edam:operation_3899 ;
-    sc:name "AVAILABILITY:ZING" ;
-    sc:url "https://github.com/weng-lab/ZING.git" .
-
-<https://bio.tools/AVAILABILITYschex> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_2229,
-        edam:topic_3170 ;
-    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTZ907>,
-        "pubmed:31794001" ;
-    sc:description """schex avoids overplotting for large single cell RNA-sequencing datasets.
-
-Hexbin plots for single cell omics data.
-
-Builds hexbin plots for variables and dimension reduction stored in single cell omics data such as SingleCellExperiment and SeuratObject. The ideas used in this package are based on the excellent work of Dan Carr, Nicholas Lewin-Koh, Martin Maechler and Thomas Lumley.
-
-The goal of schex is to provide easy plotting of hexagon cell representations of single cell data stored in SingleCellExperiment or Seurat objects.
-
-You can install schex using the Bioconductor project:.
-
-# install.packages("BiocManager").
-
-DimensionReduction, Sequencing, SingleCell, Software, Visualization.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'schex'""" ;
-    sc:featureList edam:operation_0337 ;
-    sc:license "GPL-3.0" ;
-    sc:name "AVAILABILITY:schex" ;
-    sc:url "http://bioconductor.org/packages/release/bioc/html/schex.html" .
-
-<https://bio.tools/AW-Fisher> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3308,
-        edam:topic_3360,
-        edam:topic_3518 ;
-    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTZ589>,
-        "pubmed:31359040" ;
-    sc:description "P-value evaluation, variability index and biomarker categorization for adaptively weighted Fisher's meta-analysis method in omics applications | fast computing for adaptively weighted fisher's method | Github repository for adaptively weighted fisher's method (AW-Fisher)" ;
-    sc:featureList edam:operation_3501 ;
-    sc:name "AW-Fisher" ;
-    sc:url "https://github.com/Caleb-Huo/AWFisher" .
-
 <https://bio.tools/AbLIFT> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0130,
         edam:topic_0199,
@@ -5005,18 +4325,8 @@ DimensionReduction, Sequencing, SingleCell, Software, Visualization.
     sc:name "AbLIFT" ;
     sc:url "http://AbLIFT.weizmann.ac.il" .
 
-<https://bio.tools/Aboriginal_Torres_Strait_Islander_stroke> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0749,
-        edam:topic_3399,
-        edam:topic_3403 ;
-    sc:citation <https://doi.org/10.22605/RRH4850>,
-        "pubmed:31487467" ;
-    sc:description "> HOMEPAGE MISSING! | > CORRECT NAME OF TOOL COULD ALSO BE 'Aboriginal Torres Strait Islander', 'Torres Strait Islander stroke survivors', 'Torres Strait Islander stroke', 'Aboriginal Torres Strait' | Are we there yet? Exploring the journey to quality stroke care for Aboriginal and Torres Strait Islander peoples in rural and remote Queensland | INTRODUCTION:The burden of stroke for Aboriginal and Torres Strait Islander peoples in Australia is significant. The National Stroke Foundation has identified that Aboriginal and Torres Strait Islander people are more likely to have a stroke at a younger age than the non-Indigenous population and are twice as likely for stroke to result in death, and that those Aboriginal and Torres Strait Islander people living in rural and remote areas are less likely to have access to an acute stroke unit" ;
-    sc:name "Aboriginal Torres Strait Islander stroke" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31487467" .
-
 <https://bio.tools/AcCNET> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0602 ;
@@ -5035,7 +4345,7 @@ DimensionReduction, Sequencing, SingleCell, Software, Visualization.
     biotools:primaryContact "Val F. Lanza" .
 
 <https://bio.tools/AcRanker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -5050,38 +4360,8 @@ DimensionReduction, Sequencing, SingleCell, Software, Visualization.
     sc:name "AcRanker" ;
     sc:url "https://github.com/amina01/AcRanker" .
 
-<https://bio.tools/Accrual_Prediction_Program> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_2269,
-        edam:topic_2640,
-        edam:topic_3379 ;
-    sc:citation <https://doi.org/10.1177/1740774519871474>,
-        "pubmed:31451012" ;
-    sc:description "A web-based clinical trials tool for monitoring and predicting accrual for early-phase cancer studies | BACKGROUND:Monitoring subject recruitment is key to the success of a clinical trial. Accordingly, researchers have developed accrual-monitoring tools to support the design and conduct of trials. At an institutional level, delays in identifying studies with high risk of accrual failure can lead to inefficient and costly trials with little chances of meeting study objectives. Comprehensive accrual monitoring is necessary to the success of the research enterprise. METHODS:This article describes the design and implementation of the University of Kansas Cancer Center Accrual Prediction Program, a web-based platform was developed to support comprehensive accrual monitoring and prediction for all active clinical trials" ;
-    sc:name "Accrual Prediction Program" ;
-    sc:url "https://journals.sagepub.com/doi/10.1177/1740774519871474" .
-
-<https://bio.tools/Acculturation_mental_illness_stigma_Acculturation> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3334,
-        edam:topic_3384,
-        edam:topic_3403,
-        edam:topic_3419,
-        edam:topic_3575 ;
-    sc:citation <https://doi.org/10.1017/CTS.2018.93>,
-        "pmcid:PMC6798712" ;
-    sc:description """2047 Mental illness public stigma, culture, and acculturation among Vietnamese Americans.
-
-OBJECTIVES SPECIFIC AIMS: Stigma has been recognized as a major impediment to accessing mental health care among Vietnamese and Asian Americans (Leong and Lau, 2001; Sadavoy et al., 2004; Wynaden et al., 2005; Fong and Tsuang, 2007). The underutilization of mental health care, and disparities in both access and outcomes have been attributed to a large extent to stigma and cultural characteristics of this population (Wynaden et al., 2005; Jang et al., 2009; Leung et al., 2010; Spencer et al., 2010; Jimenez et al., 2013; Augsberger et al., 2015).
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'mental illness stigma Acculturation', 'Acculturation mental illness stigma'""" ;
-    sc:featureList edam:operation_3435,
-        edam:operation_3659 ;
-    sc:name "Acculturation mental illness stigma Acculturation" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6798712/" .
-
 <https://bio.tools/AcetoBase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0632,
@@ -5098,23 +4378,8 @@ OBJECTIVES SPECIFIC AIMS: Stigma has been recognized as a major impediment to ac
     sc:name "AcetoBase" ;
     sc:url "https://acetobase.molbio.slu.se" .
 
-<https://bio.tools/ActiGraph> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3305,
-        edam:topic_3318,
-        edam:topic_3337 ;
-    sc:citation <https://doi.org/10.1111/SMS.13612>,
-        "pubmed:31834945" ;
-    sc:description """24-Hour Activity Cycle in Older Adults Using Wrist-Worn Accelerometers.
-
-ActiGraph is dedicated to providing our clients with highly accurate, innovative, and cost effective objective monitoring solutions to help them achieve their research and clinical data collection, analysis, and management objectives. Through close collaborative relationships with our clients, we strive to proactively identify emerging trends and understand the changing landscape of our industry, allowing us to deliver cutting edge hardware, software, and data management solutions to meet the evolving needs of the scientific community.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'GGIR', 'LPA MVPA', 'MVPA', '24-Hour Activity Cycle Older Adults Using Wrist-Worn Accelerometers'""" ;
-    sc:featureList edam:operation_3435 ;
-    sc:name "ActiGraph" ;
-    sc:url "https://www.actigraphcorp.com/actigraph-link/" .
-
 <https://bio.tools/ActiveDriver> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_2269,
@@ -5140,31 +4405,8 @@ ActiGraph is dedicated to providing our clients with highly accurate, innovative
     sc:url "http://reimandlab.org/software/activedriver/" ;
     biotools:primaryContact <https://orcid.org/0000-0002-2299-2309> .
 
-<https://bio.tools/Ad-SGE-REIC> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0203,
-        edam:topic_2640,
-        edam:topic_2830,
-        edam:topic_3379,
-        edam:topic_3676 ;
-    sc:citation <https://doi.org/10.1093/NEUONC/NOY148.397>,
-        "pmcid:PMC6217363" ;
-    sc:description """EXTH-49. NOVEL AD-REIC VECTOR WITH THE SUPER GENE EXPRESSION (SGE) SYSTEM (AD-SGE-REIC) AS A PROMISING THERAPEUTIC AGENT FOR MALIGNANT GLIOMA.
-
-AbstractINTRODUCTIONReduced expression in immortalized cells Dickkopf-3 (REIC Dkk-3) is a tumor suppressor and therapeutic gene in many human cancers. We have investigated the anti-glioma effect of the adenovirus vector carrying REIC Dkk-3 (Ad-CAG-REIC). Recently an Ad-REIC vector with the super gene expression (SGE) system (Ad-SGE-REIC) has been developed for higher protein expression and therapeutic effects than the conventional adenoviral vector (Ad-CAG-REIC). In this study, we evaluated the anti-glioma effect of the Ad-SGE-REIC against malignant glioma.
-
-||| HOMEPAGE BROKEN!.
-
-||| COMMON LINK WITH (PUB. & NAME DIFFERENT) bio.tools/Diffeomorphic (IC.OUP.COM).
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'Ad-CAG-REIC', 'REIC', 'Ad-SGE-REIC Ad-CAG-REIC Ad-LacZ', 'Ad-REIC'""" ;
-    sc:featureList edam:operation_0416,
-        edam:operation_2495,
-        edam:operation_3454 ;
-    sc:name "Ad-SGE-REIC" ;
-    sc:url "http://ic.oup.com" .
-
 <https://bio.tools/AdTree> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_3315 ;
     sc:citation <https://doi.org/10.20944/PREPRINTS201907.0058.V2> ;
@@ -5176,7 +4418,7 @@ AbstractINTRODUCTIONReduced expression in immortalized cells Dickkopf-3 (REIC Dk
     sc:url "https://github.com/tudelft3d/adtree" .
 
 <https://bio.tools/AdaReg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2269,
@@ -5191,52 +4433,8 @@ AbstractINTRODUCTIONReduced expression in immortalized cells Dickkopf-3 (REIC Dk
     sc:name "AdaReg" ;
     sc:url "https://github.com/mwgrassgreen/AdaReg" .
 
-<https://bio.tools/Addgene> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0196,
-        edam:topic_0632,
-        edam:topic_0654,
-        edam:topic_0780,
-        edam:topic_3511 ;
-    sc:citation <https://doi.org/10.1101/792341> ;
-    sc:description """Repository-based plasmid design Cost-optimal Gibson Assembly with repository DNA selection and primer generation.
-
-Addgene, the nonprofit global plasmid repository, archives and distributes plasmids for scientists, while also providing free molecular biology resources.
-
-Please note: Your browser does not support the features used on Addgene's website. You may not be able to create an account or request plasmids through this website until you upgrade your browser. Learn more.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'Repository-based plasmid', 'iGEM', 'repository-based', 'DNASU'""" ;
-    sc:featureList edam:operation_0308,
-        edam:operation_0310,
-        edam:operation_3431,
-        edam:operation_3891 ;
-    sc:name "Addgene" ;
-    sc:url "https://www.addgene.org/" .
-
-<https://bio.tools/Additionally_analogous> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0154,
-        edam:topic_0209,
-        edam:topic_3292,
-        edam:topic_3474,
-        edam:topic_3489 ;
-    sc:citation <https://doi.org/10.1021/ACS.JCIM.9B00689>,
-        "pubmed:31604014" ;
-    sc:description """Development of New Methods Needs Proper Evaluation-Benchmarking Sets for Machine Learning Experiments for Class A GPCRs.
-
-Machine Learning meets Biochemistry.
-
-Required python packages: numpy numba scipy tqdm scikit-learn rdkit openbabel mordred matplotlib.
-
-Create three separate directories for storing ananas database, results of the experiments, and external data. Set the following environment variables as full paths to the newly created directories: CRISPER_DATA_PATH ANANAS_RESULTS_PATH BANANAS_EXTERNAL_DATA_PATH.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'gmum'""" ;
-    sc:featureList edam:operation_0269,
-        edam:operation_3216,
-        edam:operation_3659 ;
-    sc:name "Additionally analogous" ;
-    sc:url "https://github.com/lesniak43/ananas" .
-
 <https://bio.tools/AdditiveChem> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2840,
         edam:topic_3407 ;
@@ -5256,7 +4454,7 @@ Fields searchable in this way are:CAS number,JECFA number,FEMA number,CoE number
     sc:url "http://www.rxnfinder.org/additivechem/" .
 
 <https://bio.tools/AdequacyModel> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3474 ;
     sc:citation <https://doi.org/10.1371/JOURNAL.PONE.0221487>,
@@ -5266,18 +4464,8 @@ Fields searchable in this way are:CAS number,JECFA number,FEMA number,CoE number
     sc:name "AdequacyModel" ;
     sc:url "https://github.com/prdm0/AdequacyModel" .
 
-<https://bio.tools/AdhereR_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3063,
-        edam:topic_3394 ;
-    sc:citation <https://doi.org/10.3233/SHTI190479>,
-        "pubmed:31438176" ;
-    sc:description "> MEDIUM CONFIDENCE! | > HOMEPAGE MISSING! | > NAME EQUAL TO (PUB. DIFFERENT) bio.tools/adherer | An Open Science Approach to Estimating Adherence to Medications Using Electronic Healthcare Databases | Adherence to medications is a key performance indicator and behavioral outcome in healthcare. Electronic healthcare databases represent rich data sources for estimating adherence in both research and practice. To build a solid evidence base for adherence management across clinical settings, it is necessary to standardize adherence estimation and facilitate its appropriate use. We present the recent development and oportunities offered by AdhereR, an R package for visualisation of medication histories and computation of adherence" ;
-    sc:featureList edam:operation_0337 ;
-    sc:name "AdhereR_autogenerated" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31438176" .
-
 <https://bio.tools/Adjutant> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3068 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/bty722> ;
@@ -5294,7 +4482,7 @@ Fields searchable in this way are:CAS number,JECFA number,FEMA number,CoE number
     biotools:primaryContact "Anamaria Crisan" .
 
 <https://bio.tools/Adult_Fruitfly_Brain_Atlas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3304 ;
     sc:description "A Web resource enabling to inspect the neuroanatomy of the fruit fly, equipped with a graphical interface enabling users to color structures on brain sections." ;
@@ -5302,7 +4490,7 @@ Fields searchable in this way are:CAS number,JECFA number,FEMA number,CoE number
     sc:url "https://fruitfly.tefor.net/#/" .
 
 <https://bio.tools/Afann> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3168,
         edam:topic_3474 ;
@@ -5321,7 +4509,7 @@ Afann (Alignment-Free methods Adjusted by Neural Network) is an alignment-free s
     sc:url "https://github.com/GeniusTang/Afann" .
 
 <https://bio.tools/AfumID> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2885,
@@ -5341,55 +4529,8 @@ Afann (Alignment-Free methods Adjusted by Neural Network) is an alignment-free s
     sc:url "http://afumid.shinyapps.io/afumID" ;
     biotools:primaryContact <https://orcid.org/0000-0002-7239-4817> .
 
-<https://bio.tools/Agaricus_bisporus_var_bisporus_ARP23> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0102,
-        edam:topic_0194,
-        edam:topic_0196 ;
-    sc:citation <https://doi.org/10.1534/G3.119.400563>,
-        "pmcid:PMC6778795",
-        "pubmed:31371382" ;
-    sc:description "> HOMEPAGE MISSING! | > CORRECT NAME OF TOOL COULD ALSO BE 'Agaricus bisporus var bisporus', 'bisporus var bisporus ARP23', 'Agaricus bisporus' | Whole Genome Sequence of the Commercially Relevant Mushroom Strain Agaricus bisporus var. bisporus ARP23 | Agaricus bisporus is an extensively cultivated edible mushroom. Demand for cultivation is continuously growing and difficulties associated with breeding programs now means strains are effectively considered monoculture. While commercial growing practices are highly efficient and tightly controlled, the over-use of a single strain has led to a variety of disease outbreaks from a range of pathogens including bacteria, fungi and viruses. To address this, the Agaricus Resource Program (ARP) was set up to collect wild isolates from diverse geographical locations through a bounty-driven scheme to create a repository of wild Agaricus germplasm" ;
-    sc:featureList edam:operation_3192,
-        edam:operation_3196,
-        edam:operation_3216 ;
-    sc:name "Agaricus bisporus var bisporus ARP23" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31371382" .
-
-<https://bio.tools/AgeGuess_database> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3068,
-        edam:topic_3360,
-        edam:topic_3399,
-        edam:topic_3474,
-        edam:topic_3489 ;
-    sc:citation <https://doi.org/10.1038/S41597-019-0245-9>,
-        "pmcid:PMC6823431",
-        "pubmed:31672994" ;
-    sc:description """open online resource on chronological and perceived ages of people aged 5-100.
-
-How Old Do I Look? AgeGuess is a citizen science project on human biological and chronological age.
-
-Login or Create Your AgeGuess Account.
-
-AgeGuess is a simple on-line game in which you can post your photos, have other people guess your age, as well as guess the age of other users.
-
-Don't have an AgeGuess account yet?.
-
-Register for one by clicking on the button below or use your Facebook account to connect with AgeGuess.
-
-AgeGuess is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License.
-
-A citizen science project on human biological and chronological age.
-
-Wow, that person looks really young, what is their real age?.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'age guesses'""" ;
-    sc:featureList edam:operation_0337,
-        edam:operation_3435 ;
-    sc:name "AgeGuess database" ;
-    sc:url "http://www.ageguess.org" .
-
 <https://bio.tools/AggreRATE-Pred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0634,
         edam:topic_3292,
@@ -5410,7 +4551,7 @@ AggreRATE-Pred is a linear regression based tool which can predict the change in
     sc:url "http://www.iitm.ac.in/bioinfo/aggrerate-pred/" .
 
 <https://bio.tools/Aggrescan3D> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0123,
         edam:topic_0130,
@@ -5434,7 +4575,7 @@ AggreRATE-Pred is a linear regression based tool which can predict the change in
         "Rafael Zambran" .
 
 <https://bio.tools/AgroLD> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3810 ;
     sc:description "The RDF Knowledge-based Database for plant molecular networks." ;
@@ -5442,13 +4583,13 @@ AggreRATE-Pred is a linear regression based tool which can predict the change in
     sc:url "http://agrold.southgreen.fr/agrold/" .
 
 <https://bio.tools/AgroPortal> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "Browser for ontologies for agricultural science based on NBCO BioPortal." ;
     sc:name "AgroPortal" ;
     sc:url "http://agroportal.lirmm.fr/" .
 
 <https://bio.tools/Alevin> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3170,
@@ -5471,7 +4612,7 @@ AggreRATE-Pred is a linear regression based tool which can predict the change in
         "Rob Patro" .
 
 <https://bio.tools/AliTV> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0622,
         edam:topic_3293,
@@ -5495,7 +4636,7 @@ Read the documentation at readthedocs""" ;
     sc:url "https://github.com/AliTVTeam/AliTV" .
 
 <https://bio.tools/All-FIT> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_2640,
@@ -5517,31 +4658,8 @@ Read the documentation at readthedocs""" ;
     sc:url "https://github.com/KhiabanianLab/All-FIT" ;
     biotools:primaryContact "Khiabanian Lab" .
 
-<https://bio.tools/All-FIT_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0199,
-        edam:topic_2229,
-        edam:topic_2640,
-        edam:topic_3299,
-        edam:topic_3384 ;
-    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTZ865>,
-        "pubmed:31750888" ;
-    sc:description """Allele-Frequency-based Imputation of Tumor Purity from High-Depth Sequencing Data.
-
-MOTIVATION:Clinical sequencing aims to identify somatic mutations in cancer cells for accurate diagnosis and treatment. However, most widely used clinical assays lack patient-matched control DNA and additional analysis is needed to distinguish somatic and unfiltered germline variants. Such computational analyses require accurate assessment of tumor cell content in individual specimens. Histological estimates often do not corroborate with results from computational methods that are primarily designed for normal-tumor matched data and can be confounded by genomic heterogeneity and presence of sub-clonal mutations.
-
-||| HOMEPAGE MISSING!.
-
-||| NAME EQUAL TO (PUB. DIFFERENT) bio.tools/All-FIT.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'IMPLEMENTATION:Freely'""" ;
-    sc:featureList edam:operation_0249,
-        edam:operation_3227,
-        edam:operation_3557 ;
-    sc:name "All-FIT_autogenerated" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31750888" .
-
 <https://bio.tools/AlleleAnalyzer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_3421,
         edam:topic_3912 ;
@@ -5556,43 +4674,8 @@ MOTIVATION:Clinical sequencing aims to identify somatic mutations in cancer cell
     sc:name "AlleleAnalyzer" ;
     sc:url "https://github.com/keoughkath/AlleleAnalyzer" .
 
-<https://bio.tools/Alliance_Genome_Resources> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0089,
-        edam:topic_0621,
-        edam:topic_3068,
-        edam:topic_3489,
-        edam:topic_3571 ;
-    sc:citation <https://doi.org/10.1534/GENETICS.119.302523>,
-        "pmcid:PMC6893393",
-        "pubmed:31796553" ;
-    sc:description """Building a Modern Data Ecosystem for Model Organism Databases.
-
-Alliance of Genome Resources.
-
-||| COMMON LINK WITH (PUB. & NAME DIFFERENT) bio.tools/Alliance_Genome_Resources_Portal (ALLIANCEGENOME.ORG)""" ;
-    sc:featureList edam:operation_2421,
-        edam:operation_2422,
-        edam:operation_3431 ;
-    sc:name "Alliance Genome Resources" ;
-    sc:url "http://www.alliancegenome.org" .
-
-<https://bio.tools/Alliance_Genome_Resources_Portal> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0089,
-        edam:topic_0621,
-        edam:topic_0625 ;
-    sc:citation <https://doi.org/10.1093/NAR/GKZ813>,
-        "pubmed:31552413" ;
-    sc:description "> COMMON LINK WITH (PUB. & NAME DIFFERENT) bio.tools/pymzml (GITHUB.COM) | > CORRECT NAME OF TOOL COULD ALSO BE 'Alliance Genome' | unified model organism research platform | This repo is for generating files from Alliance resources | Concise gene descriptions generator | Data loader for the Alliance of Genome Resources website | 25: 50: 75: 100: 125: 150: 175: 200: 225: 250: 275: 300: 325: 350: 375: 400: 425: 450: 475: 500: 525: 550: 575: 600: 625: 650: 675: 700: 725: 750: 775: 800: 825: 850: 875: 900: 925: 950: 975: 1000: 1025: 1050: 1075: 1100: 1125: 1150: 1175: 1200: 1225: 1250: 1275: 1300: 1325: 1350: 1375: 1400: 1425: 1450: 1475: 1500: 1525: 1550: | SF36-SONIC HEDGEHOG PROTEIN (AN47)" ;
-    sc:featureList edam:operation_2422,
-        edam:operation_3192,
-        edam:operation_3431 ;
-    sc:name "Alliance Genome Resources Portal" ;
-    sc:softwareHelp <https://www.alliancegenome.org/faq>,
-        <https://www.alliancegenome.org/help> ;
-    sc:url "http://www.alliancegenome.org" .
-
 <https://bio.tools/AlloDriver> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0199,
@@ -5614,7 +4697,7 @@ Alliance of Genome Resources.
     biotools:primaryContact <https://orcid.org/0000-0002-6558-791X> .
 
 <https://bio.tools/AlphaBeta> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0199,
         edam:topic_0654,
@@ -5632,7 +4715,7 @@ AlphaBeta is a computational method for estimating epimutation rates and spectra
     sc:url "http://bioconductor.org/packages/3.10/bioc/html/AlphaBeta.html" .
 
 <https://bio.tools/AlphaFamImpute> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0625,
         edam:topic_2885,
@@ -5648,7 +4731,7 @@ AlphaBeta is a computational method for estimating epimutation rates and spectra
     sc:url "http://www.AlphaGenes.roslin.ed.ac.uk/AlphaFamImpute" .
 
 <https://bio.tools/AlphaSeq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3382,
         edam:topic_3474 ;
@@ -5659,20 +4742,8 @@ AlphaBeta is a computational method for estimating epimutation rates and spectra
     sc:name "AlphaSeq" ;
     sc:url "https://github.com/lynshao/AlphaSeq" .
 
-<https://bio.tools/AluI> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0204,
-        edam:topic_0749,
-        edam:topic_3176 ;
-    sc:citation <https://doi.org/10.1101/GR.249326.119>,
-        "pubmed:31511305" ;
-    sc:description "> LOW CONFIDENCE! | > CORRECT NAME OF TOOL COULD ALSO BE 'chromatin-mediated' | Accessibility of promoter DNA is not the primary determinant of chromatin-mediated gene regulation | Custom MATLAB code for analyzing AluI cleavage data" ;
-    sc:featureList edam:operation_0366,
-        edam:operation_0445 ;
-    sc:name "AluI" ;
-    sc:url "https://github.com/rchereji/AluI_accessibility_analysis" .
-
 <https://bio.tools/AluMine> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0625,
         edam:topic_3673 ;
@@ -5688,7 +4759,7 @@ AlphaBeta is a computational method for estimating epimutation rates and spectra
     sc:url "https://github.com/bioinfo-ut/AluMine" .
 
 <https://bio.tools/AluScanCNV2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3168,
@@ -5706,7 +4777,7 @@ AlphaBeta is a computational method for estimating epimutation rates and spectra
     biotools:primaryContact "Taobo Hu" .
 
 <https://bio.tools/AlvisIR> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0218,
         edam:topic_3050,
@@ -5727,7 +4798,7 @@ AlphaBeta is a computational method for estimating epimutation rates and spectra
     biotools:primaryContact "Robert Bossy" .
 
 <https://bio.tools/Alyx> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3304,
         edam:topic_3365,
         edam:topic_3489 ;
@@ -5747,7 +4818,7 @@ The setup.py script sets up postgres (it creates the database and postgres user)
     sc:url "https://github.com/cortex-lab/alyx" .
 
 <https://bio.tools/AmpliSolve> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3168,
         edam:topic_3342 ;
@@ -5762,7 +4833,7 @@ The setup.py script sets up postgres (it creates the database and postgres user)
     sc:url "https://github.com/dkleftogi/AmpliSolve" .
 
 <https://bio.tools/AmpliconTagger> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_0769,
@@ -5787,14 +4858,14 @@ By Julien Tremblay - julien.tremblay_at_nrc-cnrc.gc.ca""" ;
 
 <https://bio.tools/AmtDB> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ] ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Nucleic acid sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Sequence features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0622 ;
     sc:author <https://orcid.org/0000-0003-1338-638X> ;
@@ -5815,7 +4886,7 @@ By Julien Tremblay - julien.tremblay_at_nrc-cnrc.gc.ca""" ;
         <https://orcid.org/0000-0003-3059-6127> .
 
 <https://bio.tools/AmyCo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3337,
@@ -5835,7 +4906,7 @@ By Julien Tremblay - julien.tremblay_at_nrc-cnrc.gc.ca""" ;
     sc:url "http://bioinformatics.biol.uoa.gr/amyco" .
 
 <https://bio.tools/Anabel> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0821,
@@ -5852,21 +4923,8 @@ By Julien Tremblay - julien.tremblay_at_nrc-cnrc.gc.ca""" ;
     sc:name "Anabel" ;
     sc:url "https://skscience.org/anabel" .
 
-<https://bio.tools/Analysis> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0749,
-        edam:topic_3169,
-        edam:topic_3474 ;
-    sc:citation <https://doi.org/10.12688/F1000RESEARCH.16200.2> ;
-    sc:description "> LOW CONFIDENCE! | > CORRECT NAME OF TOOL COULD ALSO BE 'DNase1-seq' | Predicting transcription factor binding using ensemble random forest models | processing and analysis of transcription factor binding sites" ;
-    sc:featureList edam:operation_0335,
-        edam:operation_0445,
-        edam:operation_3903 ;
-    sc:license "MIT" ;
-    sc:name "Analysis" ;
-    sc:url "https://github.com/SchulzLab/TFAnalysis" .
-
 <https://bio.tools/AnalyzER> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0611,
         edam:topic_0780,
@@ -5888,7 +4946,7 @@ By Julien Tremblay - julien.tremblay_at_nrc-cnrc.gc.ca""" ;
     biotools:primaryContact "Dr M.D. Fricker" .
 
 <https://bio.tools/Anchor_TFBS_prediction> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3168,
@@ -5907,7 +4965,7 @@ By Julien Tremblay - julien.tremblay_at_nrc-cnrc.gc.ca""" ;
     sc:url "https://github.com/GuanLab/Anchor" .
 
 <https://bio.tools/Anchored_Multiplier_Calculator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3305 ;
@@ -5925,24 +4983,8 @@ By Julien Tremblay - julien.tremblay_at_nrc-cnrc.gc.ca""" ;
     sc:url "http://anchoredmultiplier.ucsf.edu/" ;
     biotools:primaryContact "Paul D. Wesson" .
 
-<https://bio.tools/Android> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0749,
-        edam:topic_3277,
-        edam:topic_3382 ;
-    sc:citation <https://doi.org/10.7287/PEERJ.PREPRINTS.1219V2> ;
-    sc:description """On the impact of sampling frequency on software energy measurements.
-
-There is a pre-built image by Andrew Henderson that allows you to boot Android 4.2.2 Jelly Bean on your BeagleBone Black. This is just an extra option for users and is not officially supported by Circuitco or BeagleBoard.org.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'consumption', 'kHz', 'energy consumption', 'mobile'""" ;
-    sc:featureList edam:operation_2422,
-        edam:operation_3435,
-        edam:operation_3454 ;
-    sc:name "Android" ;
-    sc:url "http://elinux.org/Beagleboard:Android" .
-
 <https://bio.tools/Aneuvis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0654,
@@ -5965,7 +5007,7 @@ There is a pre-built image by Andrew Henderson that allows you to boot Android 4
     biotools:primaryContact "Daniel Pique" .
 
 <https://bio.tools/Animal-ImputeDB> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2885,
@@ -5985,14 +5027,14 @@ There is a pre-built image by Andrew Henderson that allows you to boot Android 4
 
 <https://bio.tools/Anncolvar> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3870" ;
-            sc:name "Trajectory data" ;
-            sc:sameAs "http://edamontology.org/data_3870" ] ;
+            sc:additionalType "http://edamontology.org/data_3870" ;
+            sc:encodingFormat "http://edamontology.org/format_3867" ;
+            sc:name "Trajectory data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2087" ;
-            sc:name "Molecular property" ;
-            sc:sameAs "http://edamontology.org/data_2087" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2087" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Molecular property" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3892 ;
     sc:citation <https://doi.org/10.3389/fmolb.2019.00025>,
@@ -6015,7 +5057,7 @@ There is a pre-built image by Andrew Henderson that allows you to boot Android 4
     biotools:primaryContact "Vojtech Spiwok" .
 
 <https://bio.tools/AnnoTree> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0194,
@@ -6037,7 +5079,7 @@ There is a pre-built image by Andrew Henderson that allows you to boot Android 4
     sc:url "http://annotree.uwaterloo.ca" .
 
 <https://bio.tools/Annot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0121,
         edam:topic_0203,
@@ -6067,7 +5109,7 @@ Summary: Annot is a web application, developed for biological wetlab experiment
     sc:url "https://gitlab.com/biotransistor/annot" .
 
 <https://bio.tools/AnnotSV> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0091,
@@ -6075,7 +5117,8 @@ Summary: Annot is a web application, developed for biological wetlab experiment
         edam:topic_3053,
         edam:topic_3168,
         edam:topic_3175 ;
-    sc:citation <https://doi.org/10.1093/bioinformatics/bty304> ;
+    sc:citation <https://doi.org/10.1093/bioinformatics/bty304>,
+        <https://doi.org/10.1093/nar/gkab402> ;
     sc:description "Integrated tool for annotation and ranking of structural variations." ;
     sc:featureList edam:operation_0226,
         edam:operation_3197 ;
@@ -6089,7 +5132,7 @@ Summary: Annot is a web application, developed for biological wetlab experiment
     biotools:primaryContact <https://orcid.org/0000-0002-4149-0857> .
 
 <https://bio.tools/AnomiGAN> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3315,
         edam:topic_3474 ;
@@ -6104,7 +5147,7 @@ Keras library package (version 2.0.6)""" ;
     sc:url "https://github.com/hobae/AnomiGAN/" .
 
 <https://bio.tools/AnthOligo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0632,
         edam:topic_3168 ;
@@ -6118,20 +5161,8 @@ AnthOligo is a web-based application developed to automatically generate oligo s
     sc:name "AnthOligo" ;
     sc:url "http://antholigo.chop.edu" .
 
-<https://bio.tools/Anti-anti-CRISPR> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0798 ;
-    sc:citation <https://doi.org/10.1038/S41592-019-0646-X>,
-        "pubmed:31673149" ;
-    sc:description """Nature Methods, doi:10.1038 s41592-019-0633-2.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 's41592-019-0633-2'""" ;
-    sc:name "Anti-anti-CRISPR" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31673149" .
-
 <https://bio.tools/AntiBac-Pred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0202,
         edam:topic_0209,
@@ -6154,31 +5185,15 @@ antiBac-Pred allows user to predict the fact that chemical compound can inhibit
     sc:url "http://www.way2drug.com/antibac" .
 
 <https://bio.tools/AntiHIV-Pred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTZ638>,
         "pubmed:31418763" ;
     sc:description "Web-resource for in silico prediction of anti-HIV/AIDS activity | MOTIVATION:Identification of new molecules promising for treatment of HIV-infection and HIV-associated disorders remains an important task in order to provide safer and more effective therapies. Utilization of prior knowledge by application of computer-aided drug discovery approaches reduces time & financial expenses and increases the chances of positive results in anti-HIV R&D. To provide the scientific community with a tool that allows estimating of potential agents for treatment of HIV-infection and its comorbidities, we have created a freely-available web-resource for prediction of relevant biological activities based on the structural formulae of drug-like molecules" ;
     sc:name "AntiHIV-Pred" ;
     sc:url "http://www.way2drug.com/hiv/" .
 
-<https://bio.tools/Antimicrobial_peptide_identification> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0121,
-        edam:topic_0154,
-        edam:topic_3474 ;
-    sc:citation <https://doi.org/10.1186/S12859-019-3327-Y>,
-        "pmcid:PMC6929291",
-        "pubmed:31870282" ;
-    sc:description """Antimicrobial peptide identification using multi-scale convolutional network.
-
-BACKGROUND:Antibiotic resistance has become an increasingly serious problem in the past decades. As an alternative choice, antimicrobial peptides (AMPs) have attracted lots of attention. To identify new AMPs, machine learning methods have been commonly used. More recently, some deep learning methods have also been applied to this problem. RESULTS:In this paper, we designed a deep learning model to identify AMP sequences. We employed the embedding layer and the multi-scale convolutional network in our model. The multi-scale convolutional network, which contains multiple convolutional layers of varying filter lengths, could utilize all latent features captured by the multiple convolutional layers. To further improve the performance, we also incorporated additional information into the designed model and proposed a fusion model""" ;
-    sc:featureList edam:operation_3092,
-        edam:operation_3631,
-        edam:operation_3695 ;
-    sc:name "Antimicrobial peptide identification" ;
-    sc:url "https://github.com/zhanglabNKU/APIN" .
-
 <https://bio.tools/ApicoTFdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0623,
         edam:topic_0749 ;
@@ -6191,7 +5206,7 @@ BACKGROUND:Antibiotic resistance has become an increasingly serious problem in t
     sc:url "http://bioinfo.icgeb.res.in/PtDB/" .
 
 <https://bio.tools/AppA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0130,
         edam:topic_2830,
@@ -6215,21 +5230,8 @@ BACKGROUND:Antibiotic resistance has become an increasingly serious problem in t
         "Minh N Nguyen",
         "Pingyu Zhong" .
 
-<https://bio.tools/App_inaguma_20190717> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3335,
-        edam:topic_3399,
-        edam:topic_3422 ;
-    sc:citation <https://doi.org/10.1371/JOURNAL.PONE.0221352>,
-        "pmcid:PMC6705850",
-        "pubmed:31437231" ;
-    sc:description "> VERY_LOW CONFIDENCE! | > CORRECT NAME OF TOOL COULD ALSO BE 'dialysis', 'all-cause', 'NRI', 'CV-related' | Prediction model for cardiovascular events or all-cause mortality in incident dialysis patients | Some variables including age, comorbidity of diabetes, and so on at dialysis initiation are associated with patient prognosis. Cardiovascular (CV) events are a major cause of death, and adequate models that predict prognosis in dialysis patients are warranted. Therefore, we created models using some variables at dialysis initiation. We used a database of 1,520 consecutive dialysis patients (median age, 70 years; 492 women [32.4%]) from a multicenter prospective cohort study. We established the primary endpoint as a composite of the incidence of first CV events or all-cause death. A multivariable Cox proportional hazard regression model was used to construct a model. We considered a complex and a simple model" ;
-    sc:featureList edam:operation_3503,
-        edam:operation_3659 ;
-    sc:name "App inaguma 20190717" ;
-    sc:url "https://statacademy.shinyapps.io/App_inaguma_20190717/" .
-
 <https://bio.tools/AppleMDO> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
         edam:topic_3169,
@@ -6248,7 +5250,7 @@ AppleMDO is a multi-dimensional omics database. Users can submit locus IDs to qu
     sc:url "http://bioinformatics.cau.edu.cn/AppleMDO/" .
 
 <https://bio.tools/Aquila_stLFR> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_2885,
         edam:topic_3673 ;
@@ -6260,67 +5262,8 @@ AppleMDO is a multi-dimensional omics database. Users can submit locus IDs to qu
     sc:name "Aquila_stLFR" ;
     sc:url "https://github.com/maiziex/Aquila_stLFR" .
 
-<https://bio.tools/ArASL> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3382,
-        edam:topic_3399,
-        edam:topic_3474 ;
-    sc:citation <https://doi.org/10.1016/J.DIB.2019.103777>,
-        "pmcid:PMC6661066",
-        "pubmed:31372425" ;
-    sc:description "> MEDIUM CONFIDENCE! | > HOMEPAGE MISSING! | > CORRECT NAME OF TOOL COULD ALSO BE 'y7pckrw6z2', 'ArSL2018', 'ArSL', 'fully-labelled' | Arabic Alphabets Sign Language Dataset | A fully-labelled dataset of Arabic Sign Language (ArSL) images is developed for research related to sign language recognition. The dataset will provide researcher the opportunity to investigate and develop automated systems for the deaf and hard of hearing people using machine learning, computer vision and deep learning algorithms. The contribution is a large fully-labelled dataset for Arabic Sign Language (ArSL) which is made publically available and free for all researchers. The dataset which is named ArSL2018 consists of 54,049 images for the 32 Arabic sign language sign and alphabets collected from 40 participants in different age groups. Different dimensions and different variations were present in images which can be cleared using pre-processing techniques to remove noise, center the image, etc" ;
-    sc:name "ArASL" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31372425" .
-
-<https://bio.tools/AraPheno_AraGWAS_Catalog_2020> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0199,
-        edam:topic_0625,
-        edam:topic_0780,
-        edam:topic_3170,
-        edam:topic_3517 ;
-    sc:citation <https://doi.org/10.1093/NAR/GKZ925>,
-        "pubmed:31642487" ;
-    sc:description """a major database update including RNA-Seq and knockout mutation data for Arabidopsis thaliana.
-
-AraPheno source code for http://arapheno.1001genomes.org.
-
-GWAS catalogue for Arabidopsis thaliana.
-
-A public phenotype database for Arabidopsis thaliana.
-
-AraPheno is a public database collection of Arabidopsis thaliana phenotypes.
-
-AraPheno also contains Arabidopsis thaliana RNASeq measurements.
-
-edit General information on how to cite AraPheno and its phenotypes.
-
-Citing AraPheno (Two Publications, 2016, 2019).
-
-help_outline General FAQ about AraPheno.
-
-AraPheno python code based on Django 1.9.6.
-
-This is a Single Page App (SPA) that consists of a django backend and a VueJS frontend The Django backend acts as a REST endpoint for the VueJS frontend.
-
-This Database allows to search and filter for public phenotypes and to obtain additional meta-information.
-
-This database allows to look for them.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'AraPheno', 'AraGWAS', 'AraGWAS Catalog'""" ;
-    sc:featureList edam:operation_2422,
-        edam:operation_3196,
-        edam:operation_3283,
-        edam:operation_3431,
-        edam:operation_3557 ;
-    sc:license "MIT" ;
-    sc:name "AraPheno AraGWAS Catalog 2020" ;
-    sc:softwareHelp <https://aragwas.1001genomes.org/docs/>,
-        <https://arapheno.1001genomes.org/faq/cite/>,
-        <https://arapheno.1001genomes.org/faq/content/>,
-        <https://arapheno.1001genomes.org/faq/rest/> ;
-    sc:url "https://arapheno.1001genomes.org" .
-
 <https://bio.tools/Arabidopsis_Interactions_Viewer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0128,
@@ -6340,28 +5283,16 @@ This database allows to look for them.
     sc:url "http://bar.utoronto.ca/interactions2/" ;
     biotools:primaryContact "Nicholas Provart" .
 
-<https://bio.tools/Arcobacter> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0625,
-        edam:topic_0632,
-        edam:topic_3305 ;
-    sc:citation <https://doi.org/10.1101/775932> ;
-    sc:description "> VERY_LOW CONFIDENCE! | > CORRECT NAME OF TOOL COULD ALSO BE 'butzleri', 'Virulence antibiotic resistance plasticity Arcobacter butzleri', 'Arcobacter butzleri', 'diarrhoeal-causing Arcobacter butzleri' | Virulence and antibiotic resistance plasticity of Arcobacter butzleri | Multilocus sequence typing (MLST) databases and software | This site uses two linked databases powered by the BIGSdb genomics platform. The sequence definition database contains allele sequence and MLST profile definitions whereas the isolate database contains provenance and epidemiological information. Further details about BIGSdb can be found in Jolley & Maiden 2010, BMC Bioinformatics 11:595 | Recent publications using MLST in Arcobacter research | Primers used for amplification and sequencing | This publication made use of the Arcobacter MLST website (https: pubmlst.org arcobacter ) sited at the University of Oxford (Jolley & Maiden 2010, BMC Bioinformatics, 11:595)" ;
-    sc:featureList edam:operation_3431,
-        edam:operation_3461,
-        edam:operation_3840 ;
-    sc:name "Arcobacter" ;
-    sc:url "https://pubmlst.org/arcobacter/" .
-
 <https://bio.tools/Arriba> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3495" ;
-            sc:name "RNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3495" ] ;
+            sc:additionalType "http://edamontology.org/data_3495" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
+            sc:name "RNA sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Sequence variations" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3175,
         edam:topic_3320,
@@ -6377,7 +5308,7 @@ This database allows to look for them.
     sc:url "https://github.com/suhrig/arriba/" .
 
 <https://bio.tools/ArrowSAM> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3673,
         edam:topic_3676 ;
     sc:citation <https://doi.org/10.1109/ICCAIS48893.2020.9096725>,
@@ -6389,7 +5320,7 @@ This database allows to look for them.
     sc:url "https://github.com/abs-tudelft/ArrowSAM" .
 
 <https://bio.tools/Arteria> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0769,
         edam:topic_3068,
@@ -6416,7 +5347,7 @@ Handling sequencing data from massive parallel sequencing can be a daunting task
     sc:url "https://arteria-project.github.io/" .
 
 <https://bio.tools/ArtiFuse> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3170,
         edam:topic_3512 ;
@@ -6426,28 +5357,8 @@ Handling sequencing data from massive parallel sequencing can be a daunting task
     sc:name "ArtiFuse" ;
     sc:url "https://github.com/TRON-Bioinformatics/ArtiFusion" .
 
-<https://bio.tools/Artificial_intelligence> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3384,
-        edam:topic_3394,
-        edam:topic_3474 ;
-    sc:citation <https://doi.org/10.1007/S00117-019-00599-9>,
-        "pubmed:31578624" ;
-    sc:description """A helpful tool for radiologists?].
-
-Artificial Intelligence and Machine Learning in Software as a Medical Device.
-
-Medical device manufacturers are using these technologies to innovate their products to better assist health care providers and improve patient care.
-
-Artificial intelligence and machine learning technologies have the potential to transform health care by deriving new and important insights from the vast amount of data generated during the delivery of health care every day. Medical device manufacturers are using these technologies to innovate their products to better assist health care providers and improve patient care. The FDA is considering a total product lifecycle-based regulatory framework for these technologies that would allow for modifications to be made from real-world learning and adaptation, while still ensuring that the safety and effectiveness of the software as a medical device is maintained.
-
-An official website of the United States government.
-
-U S""" ;
-    sc:name "Artificial intelligence" ;
-    sc:url "https://www.fda.gov/medical-devices/software-medical-device-samd/artificial-intelligence-and-machine-learning-software-medical-device" .
-
 <https://bio.tools/AsANet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0780 ;
@@ -6463,7 +5374,7 @@ U S""" ;
     sc:url "http://cab.unina.it/asanet/" .
 
 <https://bio.tools/AsCRISPR> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2885,
         edam:topic_3399,
         edam:topic_3577 ;
@@ -6475,7 +5386,7 @@ U S""" ;
     sc:url "http://www.genemed.tech/ascrispr" .
 
 <https://bio.tools/AspWood> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0152,
         edam:topic_0780,
@@ -6494,7 +5405,7 @@ U S""" ;
     biotools:primaryContact "Ewa Mellerowicz" .
 
 <https://bio.tools/Assemblytics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
@@ -6514,7 +5425,7 @@ U S""" ;
     biotools:primaryContact "Maria Nattestad" .
 
 <https://bio.tools/AssessORF> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121 ;
     sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTZ714>,
         "pubmed:31532487" ;
@@ -6525,7 +5436,7 @@ U S""" ;
     sc:url "http://www.bioconductor.org/packages/release/bioc/html/AssessORF.html" .
 
 <https://bio.tools/Assexon> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0194,
         edam:topic_0196,
         edam:topic_3512 ;
@@ -6539,48 +5450,8 @@ U S""" ;
     sc:name "Assexon" ;
     sc:url "https://github.com/yhadevol/Assexon" .
 
-<https://bio.tools/AssociVar> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0099,
-        edam:topic_0102,
-        edam:topic_0199,
-        edam:topic_0749,
-        edam:topic_3170 ;
-    sc:citation <https://doi.org/10.1093/NAR/GKZ907>,
-        "pubmed:31665473" ;
-    sc:description """Direct sequencing of RNA with MinION Nanopore.
-
-Finding associated variants in MinION data.
-
-This is the repository accompanying the paper Sequencing Complete Genomes of RNA Viruses With MinION Nanopore: Finding Associations Between Mutations (bioRxiv 2019; DOI https://doi.org/10.1101/575480) and is subject to the paper user license""" ;
-    sc:featureList edam:operation_0337,
-        edam:operation_0487,
-        edam:operation_3196,
-        edam:operation_3202 ;
-    sc:name "AssociVar" ;
-    sc:url "https://github.com/SternLabTAU/AssociVar" .
-
-<https://bio.tools/Asteraceae> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0084,
-        edam:topic_0610,
-        edam:topic_0625,
-        edam:topic_0780,
-        edam:topic_2885 ;
-    sc:citation <https://doi.org/10.1093/DATABASE/BAZ098>,
-        "pmcid:PMC6790504",
-        "pubmed:31608375" ;
-    sc:description """Progress in the study of genome size evolution in Asteraceae.
-
-Genome Size in Asteraceae database.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'Progress study genome size evolution Asteraceae', 'GSAD'""" ;
-    sc:featureList edam:operation_0327,
-        edam:operation_0544,
-        edam:operation_3478 ;
-    sc:name "Asteraceae" ;
-    sc:url "http://www.asteraceaegenomesize.com" .
-
 <https://bio.tools/AstroDot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0634,
         edam:topic_3512 ;
@@ -6593,14 +5464,14 @@ Genome Size in Asteraceae database.
 
 <https://bio.tools/Astrocyte_Quantification_and_Analysis_AQuA> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ] ;
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3591" ;
+            sc:name "Image" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2333" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Library" ;
     sc:applicationSubCategory edam:topic_2229,
@@ -6619,7 +5490,7 @@ Genome Size in Asteraceae database.
     sc:url "https://github.com/yu-lab-vt/aqua" .
 
 <https://bio.tools/AsyRW> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_1775,
         edam:topic_3168 ;
@@ -6630,30 +5501,8 @@ Genome Size in Asteraceae database.
     sc:name "AsyRW" ;
     sc:url "http://mlda.swu.edu.cn/codes.php?name=AsyRW" .
 
-<https://bio.tools/AtFKBP53> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0154,
-        edam:topic_0736,
-        edam:topic_0749,
-        edam:topic_0780,
-        edam:topic_3295 ;
-    sc:citation <https://doi.org/10.1093/NAR/GKZ1153>,
-        "pubmed:31807785" ;
-    sc:description """a chimeric histone chaperone with functional nucleoplasmin and PPIase domains.
-
-FKBP53 is one of the seven multi-domain FK506-binding proteins present in Arabidopsis thaliana, and it is known to get targeted to the nucleus. It has a conserved PPIase domain at the C-terminus and a highly charged N-terminal stretch, which has been reported to bind to histone H3 and perform the function of a histone chaperone. To better understand the molecular details of this PPIase with histone chaperoning activity, we have solved the crystal structures of its terminal domains and functionally characterized them. The C-terminal domain showed strong PPIase activity, no role in histone chaperoning and revealed a monomeric five-beta palm-like fold that wrapped over a helix, typical of an FK506-binding domain.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'PPIase', 'nucleoplasmin', 'FK506-binding', 'chaperoning'""" ;
-    sc:featureList edam:operation_0303,
-        edam:operation_0310,
-        edam:operation_0337,
-        edam:operation_0432 ;
-    sc:name "AtFKBP53" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31807785" .
-
 <https://bio.tools/AtFusionDB> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -6676,7 +5525,7 @@ FKBP53 is one of the seven multi-domain FK506-binding proteins present in Arabid
     biotools:primaryContact "Dr. Shailesh Kumar" .
 
 <https://bio.tools/AtacWorks> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_0769,
         edam:topic_3169,
@@ -6697,7 +5546,7 @@ AtacWorks trains a deep neural network to learn a mapping between noisy (low cov
     sc:url "https://github.com/clara-genomics/AtacWorks" .
 
 <https://bio.tools/Atacama_Database> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3297,
         edam:topic_3300,
         edam:topic_3697 ;
@@ -6709,7 +5558,7 @@ AtacWorks trains a deep neural network to learn a mapping between noisy (low cov
     sc:url "https://www.atacamadb.cl" .
 
 <https://bio.tools/AtbPpred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2269,
         edam:topic_2830 ;
@@ -6720,26 +5569,8 @@ AtacWorks trains a deep neural network to learn a mapping between noisy (low cov
     sc:name "AtbPpred" ;
     sc:url "http://thegleelab.org/AtbPpred" .
 
-<https://bio.tools/Athena> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0196,
-        edam:topic_0218,
-        edam:topic_3168 ;
-    sc:citation <https://doi.org/10.1038/S41598-019-52196-4>,
-        "pmcid:PMC6834855",
-        "pubmed:31695060" ;
-    sc:description """Automated Tuning of k-mer based Genomic Error Correction Algorithms using Language Models.
-
-The performance of most error-correction (EC) algorithms that operate on genomics reads is dependent on the proper choice of its configuration parameters, such as the value of k in k-mer based techniques. In this work, we target the problem of finding the best values of these configuration parameters to optimize error correction and consequently improve genome assembly. We perform this in an adaptive manner, adapted to different datasets and to EC tools, due to the observation that different configuration parameters are optimal for different datasets, i.e., from different platforms and species, and vary with the EC algorithm being applied. We use language modeling techniques from the Natural Language Processing (NLP) domain in our algorithmic suite, Athena, to automatically tune the performance-sensitive configuration parameters.
-
-||| HOMEPAGE MISSING!""" ;
-    sc:featureList edam:operation_0524,
-        edam:operation_0525,
-        edam:operation_3472 ;
-    sc:name "Athena" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31695060" .
-
 <https://bio.tools/Atropos> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0196,
         edam:topic_3168 ;
@@ -6759,7 +5590,7 @@ Atropos is tool for specific, sensitive, and speedy trimming of NGS reads. It is
     sc:url "https://github.com/jdidion/atropos" .
 
 <https://bio.tools/Augur> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_2229,
         edam:topic_3170,
@@ -6778,7 +5609,7 @@ Augur is an R package to prioritize cell types involved in the response to an ex
     sc:url "https://github.com/neurorestore/Augur" .
 
 <https://bio.tools/Auto-CHO> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_2830,
         edam:topic_3314 ;
@@ -6789,38 +5620,8 @@ Augur is an R package to prioritize cell types involved in the response to an ex
     sc:name "Auto-CHO" ;
     sc:url "https://sites.google.com/view/auto-cho/home" .
 
-<https://bio.tools/AutoCloud> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3318,
-        edam:topic_3382,
-        edam:topic_3393,
-        edam:topic_3474 ;
-    sc:citation <https://doi.org/10.20944/PREPRINTS201808.0352.V2> ;
-    sc:description """“Universal” Physical and Statistical Model-Based 2D Spatial Topology-Preserving Software Toolbox for Cloud/Cloud-Shadow Detection in Multi-Sensor Single-Date Earth Observation Multi-Spectral Imagery Eligible for Systematic ESA EO Level 2 Product Generation.
-
-The European Space Agency (ESA) defines as Earth observation (EO) Level 2 information product a single-date multi-spectral (MS) image corrected for atmospheric, adjacency and topographic effects, stacked with its data-derived scene classification map (SCM), whose thematic map legend includes quality layers cloud and cloud-shadow. ESA EO Level 2 product generation is an inherently ill-posed computer vision (CV) problem never accomplished to date in operating mode by any EO data provider at the ground segment.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'ARD', 'ESA EO', 'EO', 'multi-sensor EO'""" ;
-    sc:featureList edam:operation_2422,
-        edam:operation_2428,
-        edam:operation_3443 ;
-    sc:name "AutoCloud+" ;
-    sc:url "https://doi.org/10.20944/PREPRINTS201808.0352.V2" .
-
-<https://bio.tools/AutoDock-GPU> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0154,
-        edam:topic_2275,
-        edam:topic_3336 ;
-    sc:citation <https://doi.org/10.26434/CHEMRXIV.9702389.V1> ;
-    sc:description "> MEDIUM CONFIDENCE! | > CORRECT NAME OF TOOL COULD ALSO BE 'AutoDock4', 'OpenCL' | Accelerating AutoDock4 with GPUs and Gradient-Based Local Search | AutoDock-GPU: AutoDock for GPUs using OpenCL | Molecular Graphics Laboratory, TSRI | Besides the legacy Solis-Wets local search method, AutoDock-GPU adds newly implemented local-search methods based on gradients of the scoring function. One of these methods, ADADELTA, has proven to increase significantly the docking quality in terms of RMSDs and scores" ;
-    sc:featureList edam:operation_0478,
-        edam:operation_3798 ;
-    sc:name "AutoDock-GPU" ;
-    sc:url "https://autodock.scripps.edu" .
-
 <https://bio.tools/AutoEncoder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0659,
@@ -6838,26 +5639,8 @@ The European Space Agency (ESA) defines as Earth observation (EO) Level 2 inform
     sc:name "AutoEncoder" ;
     sc:url "https://github.com/BeautyOfWeb/Multiview-AutoEncoder" .
 
-<https://bio.tools/AutoGenome> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0199,
-        edam:topic_0218,
-        edam:topic_3170,
-        edam:topic_3474,
-        edam:topic_3512 ;
-    sc:citation <https://doi.org/10.1101/842526> ;
-    sc:description """An AutoML Tool for Genomic Research.
-
-Abstract Deep learning have made great successes in traditional fields like computer vision (CV), natural language processing (NLP) and speech processing. Those achievements greatly inspire researchers in genomic study and make deep learning in genomics a very hot topic. Convolutional neural network (CNN) and recurrent neural network (RNN) are frequently used for genomic sequence prediction problems; multiple layer perception (MLP) and auto-encoders (AE) are frequently used for genomic profiling data like RNA expression data and gene mutation data. Here, we introduce a new neural network architecture, named residual fully-connected neural network (RFCN) and demonstrate its advantage for modeling genomic profiling data. We further incorporate AutoML algorithms and implement AutoGenome, an end-to-end automated genomic deep learning framework.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'RFCN'""" ;
-    sc:featureList edam:operation_2495 ;
-    sc:name "AutoGenome" ;
-    sc:url "https://doi.org/10.1101/842526" .
-
 <https://bio.tools/AutoGridFR> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0219,
         edam:topic_2275 ;
@@ -6871,7 +5654,7 @@ Abstract Deep learning have made great successes in traditional fields like comp
     sc:url "http://adfr.scripps.edu/AutoDockFR/agfr.html" .
 
 <https://bio.tools/AutoPVS1> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3168,
         edam:topic_3320 ;
@@ -6882,7 +5665,7 @@ Abstract Deep learning have made great successes in traditional fields like comp
     sc:url "http://autopvs1.genetics.bgi.com/" .
 
 <https://bio.tools/AutoTuner> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3172,
         edam:topic_3407,
@@ -6896,20 +5679,8 @@ Abstract Deep learning have made great successes in traditional fields like comp
     sc:name "AutoTuner" ;
     sc:url "https://github.com/crmclean/Autotuner" .
 
-<https://bio.tools/Autoencoder-based_cluster_ensembles> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3170,
-        edam:topic_3308,
-        edam:topic_3474 ;
-    sc:citation <https://doi.org/10.1101/773903> ;
-    sc:description "> VERY_LOW CONFIDENCE! | > CORRECT NAME OF TOOL COULD ALSO BE 'autoencoder-based cluster ensemble', 'ensemble', 'autoencoder-based', 'feature-dimensionality' | Autoencoder-based cluster ensembles for single-cell RNA-seq data analysis | autoencoder_cluster_ensemble" ;
-    sc:featureList edam:operation_3432,
-        edam:operation_3680,
-        edam:operation_3891 ;
-    sc:name "Autoencoder-based cluster ensembles" ;
-    sc:url "https://github.com/gedcom/autoencoder_cluster_ensemble" .
-
 <https://bio.tools/Autopilot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3304,
         edam:topic_3361,
         edam:topic_3678 ;
@@ -6920,7 +5691,7 @@ Abstract Deep learning have made great successes in traditional fields like comp
     sc:url "https://github.com/wehr-lab/autopilot" .
 
 <https://bio.tools/Axiom_Analysis_Suite> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Suite" ;
     sc:applicationSubCategory edam:topic_2885,
@@ -6942,7 +5713,7 @@ Abstract Deep learning have made great successes in traditional fields like comp
     biotools:primaryContact <https://orcid.org/0000-0001-9224-056X> .
 
 <https://bio.tools/B-SOiD> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3304,
         edam:topic_3474 ;
     sc:citation <https://doi.org/10.1101/770271> ;
@@ -6952,87 +5723,8 @@ Abstract Deep learning have made great successes in traditional fields like comp
     sc:name "B-SOiD" ;
     sc:url "https://github.com/YttriLab/B-SOiD" .
 
-<https://bio.tools/B27> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0634,
-        edam:topic_2640,
-        edam:topic_3421 ;
-    sc:citation <https://doi.org/10.1097/DCR.0000000000001485>,
-        "pubmed:31567922" ;
-    sc:description """Comparison of Patient-Reported Outcomes in Laparoscopic and Open Right Hemicolectomy.
-
-The requested resource https://links.lww.com/_redirect.aspx?404;https://links.lww.com:443/DCR/B27.REPORTE was not found!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'los pacientes sometidos resecciones abiertas', 'resultados relevantes para los pacientes', 'sintomas en el periodo temprano', 'Los pacientes sometidos reseccion laparoscopica'""" ;
-    sc:name "B27" ;
-    sc:url "http://links.lww.com/DCR/B27" .
-
-<https://bio.tools/B47> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_2640,
-        edam:topic_3384 ;
-    sc:citation <https://doi.org/10.1097/DCR.0000000000001509>,
-        "pubmed:31569095" ;
-    sc:description """Current Management of Malignant Colorectal Polyps Across a Regional United Kingdom Cancer Network.
-
-The requested resource https://links.lww.com/_redirect.aspx?404;https://links.lww.com:443/DCR/B47.MANEJO was not found!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'polipos colorrectales malignos', 'polipos colorrectales malignos presentados'""" ;
-    sc:name "B47" ;
-    sc:url "http://links.lww.com/DCR/B47" .
-
-<https://bio.tools/B69> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0602,
-        edam:topic_3403,
-        edam:topic_3421 ;
-    sc:citation <https://doi.org/10.1097/DCR.0000000000001528>,
-        "pubmed:31842161" ;
-    sc:description """The Association of Enhanced Recovery Pathway and Acute Kidney Injury in Patients Undergoing Colorectal Surgery.
-
-BACKGROUND:Acute kidney injury is associated with increased postoperative length of hospital stay and increases the risk of postoperative mortality. The association between the development of postoperative acute kidney injury and the implementation of an enhanced recovery after surgery protocol remains unclear. OBJECTIVE:This study aimed to examine the relationship between the implementation of an enhanced recovery pathway and the development of postoperative acute kidney injury.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'recovery', 'enhanced recovery', 'enhanced', 'postoperative acute kidney injury'""" ;
-    sc:name "B69" ;
-    sc:url "http://links.lww.com/DCR/B69" .
-
-<https://bio.tools/B86> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0634 ;
-    sc:citation <https://doi.org/10.1097/DCR.0000000000001547>,
-        "pubmed:31842162" ;
-    sc:description """Does Smoking Cessation Reduce Surgical Recurrence After Primary Ileocolic Resection for Crohn's Disease?.
-
-BACKGROUND:Tobacco smoking is a known risk factor for recurrence of Crohn's disease after surgical resection. OBJECTIVE:This study assessed the effect of smoking cessation on long-term surgical recurrence after primary ileocolic resection for Crohn's disease. DESIGN:A retrospective review of a prospectively maintained database was conducted. SETTINGS:Patient demographic data and medical and surgical details were combined from 2 specialist centers. After ethical approval, patients were contacted in case of missing data regarding smoking habit. PATIENTS:All patients undergoing ileocolic resection between 2000 and 2012 for histologically confirmed Crohn's disease were included.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'ileocolic resection', 'ileocolic resection Crohn', 'ileocolic', 'resection'""" ;
-    sc:name "B86" ;
-    sc:url "http://links.lww.com/DCR/B86" .
-
-<https://bio.tools/B88> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_2640,
-        edam:topic_3384,
-        edam:topic_3444,
-        edam:topic_3474 ;
-    sc:citation <https://doi.org/10.1097/DCR.0000000000001519>,
-        "pubmed:31842158" ;
-    sc:description """Evaluation of Rectal Cancer Circumferential Resection Margin Using Faster Region-based Convolutional Neural Network in High-Resolution Magnetic Resonance Images.
-
-BACKGROUND:High-resolution MRI is regarded as the best method to evaluate whether there is an involved circumferential resection margin in rectal cancer. OBJECTIVE:We explored the application of the Faster Region-based Convolutional Neural Network to identify positive circumferential resection margins in high-resolution MRI images. DESIGN AND SETTINGS:This was a retrospective study conducted at a single surgical unit of a public university hospital.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'circumferential resection', 'circumferential resection margin', 'circumferential', 'resection margin'""" ;
-    sc:name "B88" ;
-    sc:url "http://links.lww.com/DCR/B88" .
-
-<https://bio.tools/B920> a sc:SoftwareApplication ;
-    sc:citation <https://doi.org/10.1097/MLR.0000000000001261>,
-        "pubmed:31876646" ;
-    sc:description """Drivers of High-Cost Medical Complexity in a Medicaid Population.
-
-BACKGROUND:Efforts to improve outcomes for the 10% of patients using two thirds of health care expenditures increasingly include addressing social determinants. Empiric evidence is needed to identify the highest impact nonmedical drivers of medical complexity and cost. OBJECTIVES:This study examines whether complex, highest cost patients have different patterns of critical life adversity than those with better health and lower utilization. RESEARCH DESIGN:Using a validated algorithm we constructed a complexity cost risk patient profile. We developed and fielded a life experience survey (Supplemental Digital Content 1, http: links.lww.com MLR B920) to a representative sample, then examined how the prevalence of specific adversities varied between complex, high-cost individuals, and others.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'maltreatment', 'Medicaid', 'incarceration', 'adversities'""" ;
-    sc:name "B920" ;
-    sc:url "http://links.lww.com/MLR/B920" .
-
 <https://bio.tools/BACMMAN> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_3382,
         edam:topic_3855 ;
@@ -7046,7 +5738,7 @@ BACKGROUND:Efforts to improve outcomes for the 10% of patients using two thirds
     sc:url "https://github.com/jeanollion/bacmman" .
 
 <https://bio.tools/BAGSE> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2269,
         edam:topic_3170,
@@ -7066,7 +5758,7 @@ This repository contains the software package BAGSE designed for gene set enrich
     sc:url "https://github.com/xqwen/bagse/" .
 
 <https://bio.tools/BAM-matcher> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3168,
@@ -7085,7 +5777,7 @@ This repository contains the software package BAGSE designed for gene set enrich
     biotools:primaryContact "Paul P.S. Wang" .
 
 <https://bio.tools/BAMM-SC> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2229,
@@ -7110,7 +5802,7 @@ This repository contains the software package BAGSE designed for gene set enrich
         "Zhe Sun" .
 
 <https://bio.tools/BAMixChecker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3673,
@@ -7126,7 +5818,7 @@ This repository contains the software package BAGSE designed for gene set enrich
     sc:url "https://github.com/heinc1010/BAMixChecker" .
 
 <https://bio.tools/BANDITS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3308,
         edam:topic_3320 ;
@@ -7140,7 +5832,7 @@ This repository contains the software package BAGSE designed for gene set enrich
     sc:url "https://bioconductor.org/packages/BANDITS" .
 
 <https://bio.tools/BART-Seq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0632,
         edam:topic_3170,
         edam:topic_3308 ;
@@ -7155,27 +5847,8 @@ This repository contains the software package BAGSE designed for gene set enrich
     sc:name "BART-Seq" ;
     sc:url "https://github.com/theislab/bartSeq" .
 
-<https://bio.tools/BASE_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0632,
-        edam:topic_0804,
-        edam:topic_3168,
-        edam:topic_3304 ;
-    sc:citation <https://doi.org/10.1101/836999> ;
-    sc:description """an easy-to-use software for complete data analysis in single cell immunoglobulin cloning.
-
-Brain Antibody Sequence Evaluation.
-
-download the germline V D and J genes (see https://ncbi.github.io/igblast/cook/How-to-set-up.html), and set up the blast databases and name them accordingly (e.g. V_without_orphon).
-
-install igblast (see https://ncbi.github.io/igblast/cook/How-to-set-up.html).
-
-||| NAME EQUAL TO (PUB. DIFFERENT) bio.tools/base""" ;
-    sc:license "GPL-3.0" ;
-    sc:name "BASE_autogenerated" ;
-    sc:url "https://github.com/automatedSequencing/BASE" .
-
 <https://bio.tools/BASILIScan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0593,
@@ -7199,7 +5872,7 @@ install igblast (see https://ncbi.github.io/igblast/cook/How-to-set-up.html).
     biotools:primaryContact "M. Barski" .
 
 <https://bio.tools/BBCancer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0659,
         edam:topic_2640,
@@ -7217,7 +5890,7 @@ The early detection of cancer holds the key to combat and control the increasing
     sc:url "http://bbcancer.renlab.org/" .
 
 <https://bio.tools/BCIgEPred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0091 ;
     sc:author <https://orcid.org/0000-0001-5145-0384> ;
@@ -7232,7 +5905,7 @@ The early detection of cancer holds the key to combat and control the increasing
     sc:url "https://github.com/brsaran/BCIgePred" .
 
 <https://bio.tools/BCSExplorer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0821,
         edam:topic_3047,
@@ -7250,7 +5923,7 @@ Select all Deselect all Toggle select.
     sc:url "http://www.rxnfinder.org/bcsexplorer/" .
 
 <https://bio.tools/BCrystal> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
         edam:topic_0121,
@@ -7269,7 +5942,7 @@ The training set is readily available for ease of use at: https://drive.google.c
     sc:url "https://github.com/raghvendra5688/BCrystal" .
 
 <https://bio.tools/BDE> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3047,
         edam:topic_3314,
@@ -7283,36 +5956,8 @@ The training set is readily available for ease of use at: https://drive.google.c
     sc:name "BDE" ;
     sc:url "https://ml.nrel.gov/bde" .
 
-<https://bio.tools/BDE_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0154,
-        edam:topic_3047,
-        edam:topic_3314,
-        edam:topic_3407,
-        edam:topic_3474 ;
-    sc:citation <https://doi.org/10.26434/CHEMRXIV.10052048.V2> ;
-    sc:description """Prediction of Homolytic Bond Dissociation Enthalpies for Organic Molecules at near Chemical Accuracy with Sub-Second Computational Cost.
-
-Code and data to replicate the figures in doi:10.26434/chemrxiv.10052048.
-
-A machine- L earning derived, F ast, A ccurate B ond dissociation E nthalpy T ool.
-
-Machine learning predictions of bond dissociation energies (BDEs).
-
-Code and jupyter notebooks to reproduce the figures in.
-
-This tool predicts BDEs for single, noncyclic bonds in neutral organic molecules consisting of C, H, O, and N atoms. Mean absolute errors are typically less than 1 kcal/mol for most compounds. To use, enter a SMILES string above (or use the drawing tool) and press submit. Reference DFT-calculated BDEs used as training can be displayed for any predicted bond using the neighbors link.
-
-St John, P., Guan, Y., Kim, Y., Kim, S., & Paton, R. (2019).
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'ALFABET', 'Bond Dissociation Enthalpies', 'Bond dissociation Enthalpy'""" ;
-    sc:featureList edam:operation_0394,
-        edam:operation_0417,
-        edam:operation_3439 ;
-    sc:name "BDE_autogenerated" ;
-    sc:url "https://ml.nrel.gov/bde" .
-
 <https://bio.tools/BEAN-counter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3168,
@@ -7333,7 +5978,7 @@ St John, P., Guan, Y., Kim, Y., Kim, S., & Paton, R. (2019).
     biotools:primaryContact "Myers Lab" .
 
 <https://bio.tools/BEERE> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0625,
@@ -7355,51 +6000,8 @@ St John, P., Guan, Y., Kim, Y., Kim, S., & Paton, R. (2019).
     sc:url "http://discovery.informatics.uab.edu/beere/" ;
     biotools:primaryContact "Jake Y Chen" .
 
-<https://bio.tools/BEFORE> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_2640,
-        edam:topic_3068,
-        edam:topic_3420,
-        edam:topic_3421 ;
-    sc:citation <https://doi.org/10.1186/S12911-019-0912-Y>,
-        "pmcid:PMC6819618",
-        "pubmed:31660965" ;
-    sc:description """development and alpha testing of a fertility tool for premenopausal breast cancer patients.
-
-BACKGROUND:Premenopausal breast cancer patients are at risk of treatment-related infertility. Many patients do not receive sufficient fertility information before treatment. As such, our team developed and alpha tested the Begin Exploring Fertility Options, Risks, and Expectations decision aid (BEFORE DA). METHODS:The BEFORE DA development process was guided by the International Patient Decision Aids Standards and the Ottawa Decision Support Framework. Our team used integrated knowledge translation by collaborating with multiple stakeholders throughout the development process including breast cancer survivors, multi-disciplinary health care providers (HCPs), advocates, and cancer organization representatives.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'fertilityaid', 'fertility', 'fertility fertility', 'premenopausal'""" ;
-    sc:featureList edam:operation_3359 ;
-    sc:name "BEFORE" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31660965" .
-
-<https://bio.tools/BEL> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0089,
-        edam:topic_0218,
-        edam:topic_0625,
-        edam:topic_0769,
-        edam:topic_3474 ;
-    sc:citation <https://doi.org/10.1093/DATABASE/BAZ084>,
-        "pmcid:PMC6787548",
-        "pubmed:31603193" ;
-    sc:description """The extraction of complex relationships and their conversion to biological expression language (BEL) overview of the BioCreative VI (2017) BEL track.
-
-A semi-automated workflow for BEL network creation.
-
-BELIEF (Biological Expression Language Information Extraction WorkFlow) is a semi-automated workflow for BEL network creation. It embeds an information extraction workflow with state-of-the-art named entity recognition (NER) and relation extraction (RE) methods. This dashboard provides an interface to the BELIEF system.
-
-||| COMMON LINK WITH (PUB. & NAME DIFFERENT) bio.tools/BEL_Commons (SCAI.FRAUNHOFER.DE), bio.tools/PathMe (SCAI.FRAUNHOFER.DE).
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'BioCreative'""" ;
-    sc:featureList edam:operation_2422,
-        edam:operation_3280,
-        edam:operation_3625 ;
-    sc:name "BEL" ;
-    sc:url "http://belief.scai.fraunhofer.de/BeliefDashboard" .
-
 <https://bio.tools/BEL_Commons> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0602,
@@ -7421,7 +6023,7 @@ BELIEF (Biological Expression Language Information Extraction WorkFlow) is a sem
     sc:url "https://bel-commons.scai.fraunhofer.de/" .
 
 <https://bio.tools/BERMUDA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2229,
         edam:topic_3170 ;
@@ -7435,30 +6037,8 @@ BELIEF (Biological Expression Language Information Extraction WorkFlow) is a sem
     sc:name "BERMUDA" ;
     sc:url "https://github.com/txWang/BERMUDA" .
 
-<https://bio.tools/BEST_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0203,
-        edam:topic_0602,
-        edam:topic_3295,
-        edam:topic_3419,
-        edam:topic_3518 ;
-    sc:citation <https://doi.org/10.1186/S12859-019-3222-6>,
-        "pmcid:PMC6896511",
-        "pubmed:31805847" ;
-    sc:description """a web server for brain expression Spatio-temporal pattern analysis.
-
-Brain Expression Spatio-Temporal pattern.
-
-||| NAME EQUAL TO (PUB. DIFFERENT) bio.tools/best_literature, bio.tools/best.
-
-||| COMMON LINK WITH (PUB. & NAME DIFFERENT) bio.tools/i-gsea4gwas (PSYCH.AC.CN), bio.tools/icsnpathway (PSYCH.AC.CN)""" ;
-    sc:featureList edam:operation_0337,
-        edam:operation_2495,
-        edam:operation_3799 ;
-    sc:name "BEST_autogenerated" ;
-    sc:url "http://best.psych.ac.cn" .
-
 <https://bio.tools/BEable-GPS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
@@ -7478,7 +6058,7 @@ Brain Expression Spatio-Temporal pattern.
     sc:url "http://www.picb.ac.cn/rnomics/BEable-GPS" .
 
 <https://bio.tools/BGSC> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_3320,
         edam:topic_3523 ;
@@ -7491,7 +6071,7 @@ Brain Expression Spatio-Temporal pattern.
     sc:url "https://github.com/GrosseLab/BGSC" .
 
 <https://bio.tools/BGSVM-NUC> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_3125,
         edam:topic_3534 ;
@@ -7504,7 +6084,7 @@ Brain Expression Spatio-Temporal pattern.
     sc:url "http://202.119.84.36:3079/BGSVM-NUC/" .
 
 <https://bio.tools/BGVD> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0621,
@@ -7522,7 +6102,7 @@ Brain Expression Spatio-Temporal pattern.
     sc:url "http://animal.nwsuaf.edu.cn/code/index.php/BosVar" .
 
 <https://bio.tools/BIGSI> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0196,
@@ -7543,27 +6123,8 @@ Brain Expression Spatio-Temporal pattern.
     sc:url "http://www.bigsi.io/" ;
     biotools:primaryContact "Phelim Bradley" .
 
-<https://bio.tools/BIGsDB> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0821,
-        edam:topic_2885,
-        edam:topic_3305 ;
-    sc:citation <https://doi.org/10.1093/OFID/OFZ360.309>,
-        "pmcid:PMC6810522" ;
-    sc:description """234. Reversal of Carbapenem and Amikacin Susceptibilities in Isogenic Klebsiella pneumoniae From a Patient with Persistent Bacteriuria.
-
-Institut Pasteur MLST databases and software.
-
-This site hosts databases of multilocus sequence typing (MLST) and whole-genome based typing schemes, which are used for genotyping of bacterial isolates. They provide reference nomenclatures of microbial strains and are mainly intended for molecular epidemiology of pathogens of public health importance, detection of virulence and antimicrobial resistance genes, and for population biology research. This site is powered by the BIGSdb software.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'CGE', 'CLC Genomics', 'CLSI guidelines', 'cultures grew'""" ;
-    sc:featureList edam:operation_3482,
-        edam:operation_3803,
-        edam:operation_3840 ;
-    sc:name "BIGsDB" ;
-    sc:url "https://bigsdb.pasteur.fr" .
-
 <https://bio.tools/BINDER> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0602,
         edam:topic_0749 ;
@@ -7578,21 +6139,8 @@ This site hosts databases of multilocus sequence typing (MLST) and whole-genome
     sc:name "BINDER" ;
     sc:url "http://github.com/ptrcksn/BINDER" .
 
-<https://bio.tools/BIOMINT> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0821,
-        edam:topic_3292,
-        edam:topic_3315 ;
-    sc:citation <https://doi.org/10.1002/BMB.21302>,
-        "pubmed:31532881" ;
-    sc:description "Designing and developing a biomolecular interactive tutorial (BIOMINT) learning tool for undergraduate students | Enjoy the videos and music you love, upload original content, and share it all with friends, family, and the world on YouTube | About Press Copyright Contact us Creators Advertise Developers Terms Privacy Policy & Safety Test new features | [[getSimpleString(data.promoText)]] | [[computeRestrictedModeText_(clientSettings_.restrictedMode)]]" ;
-    sc:featureList edam:operation_0334,
-        edam:operation_0337,
-        edam:operation_3216 ;
-    sc:name "BIOMINT" ;
-    sc:url "https://bit.ly/biomint" .
-
 <https://bio.tools/BIRD> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0199,
         edam:topic_2269 ;
@@ -7607,30 +6155,30 @@ This site hosts databases of multilocus sequence typing (MLST) and whole-genome
 
 <https://bio.tools/BISE> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0968" ;
-            sc:name "Keyword" ;
-            sc:sameAs "http://edamontology.org/data_0968" ],
+            sc:additionalType "http://edamontology.org/data_0966" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Ontology term" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0966" ;
-            sc:name "Ontology term" ;
-            sc:sameAs "http://edamontology.org/data_0966" ] ;
+            sc:additionalType "http://edamontology.org/data_0968" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Keyword" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0949" ;
-            sc:name "Workflow metadata" ;
-            sc:sameAs "http://edamontology.org/data_0949" ],
+            sc:additionalType "http://edamontology.org/data_1731" ;
+            sc:encodingFormat "http://edamontology.org/format_3464" ;
+            sc:name "Ontology concept definition" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2337" ;
-            sc:name "Resource metadata" ;
-            sc:sameAs "http://edamontology.org/data_2337" ],
+            sc:additionalType "http://edamontology.org/data_3669" ;
+            sc:encodingFormat "http://edamontology.org/format_3464" ;
+            sc:name "Training material" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3669" ;
-            sc:name "Training material" ;
-            sc:sameAs "http://edamontology.org/data_3669" ],
+            sc:additionalType "http://edamontology.org/data_2337" ;
+            sc:encodingFormat "http://edamontology.org/format_3464" ;
+            sc:name "Resource metadata" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1731" ;
-            sc:name "Ontology concept definition" ;
-            sc:sameAs "http://edamontology.org/data_1731" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0949" ;
+            sc:encodingFormat "http://edamontology.org/format_3464" ;
+            sc:name "Workflow metadata" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Bioinformatics portal",
         "Database portal",
         "Web application" ;
@@ -7661,7 +6209,7 @@ This site hosts databases of multilocus sequence typing (MLST) and whole-genome
     biotools:primaryContact <https://orcid.org/0000-0002-4822-165X> .
 
 <https://bio.tools/BISON-brain> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3304,
         edam:topic_3384,
         edam:topic_3444 ;
@@ -7672,17 +6220,8 @@ This site hosts databases of multilocus sequence typing (MLST) and whole-genome
     sc:name "BISON" ;
     sc:url "http://nist.mni.mcgill.ca/?p=2148" .
 
-<https://bio.tools/BISON_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3304,
-        edam:topic_3384,
-        edam:topic_3444 ;
-    sc:citation <https://doi.org/10.1101/747998> ;
-    sc:description "> HOMEPAGE MISSING! | > NAME (BISON) SIMILAR TO (PUB. DIFFERENT) bio.tools/bison (Bison) | Brain tISue segmentatiON pipeline using T1-weighted magnetic resonance images and a random forests classifier | Abstract Introduction Accurate differentiation of brain tissue types from T1-weighted magnetic resonance images (MRIs) is a critical requirement in many neuroscience and clinical applications. Accurate automated tissue segmentation is challenging due to the variabilities in the tissue intensity profiles caused by differences in scanner models and acquisition protocols, in addition to the varying age of the subjects and potential presence of pathology. In this paper, we present BISON (Brain tISue segmentatiON), a new pipeline for tissue segmentation. Methods BISON performs tissue segmentation using a random forests classifier and a set of intensity and location priors obtained based on T1-weighted images" ;
-    sc:name "BISON_autogenerated" ;
-    sc:url "https://doi.org/10.1101/747998" .
-
 <https://bio.tools/BISR-RNAseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3170,
         edam:topic_3308,
@@ -7703,7 +6242,7 @@ Submission files for the ICIBM2019 conference""" ;
     sc:url "https://code.bmi.osumc.edu/gadepalli.3/BISR-RNAseq-ICIBM2019" .
 
 <https://bio.tools/BITACORA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0623,
         edam:topic_3512 ;
@@ -7718,23 +6257,8 @@ Submission files for the ICIBM2019 conference""" ;
     sc:name "BITACORA" ;
     sc:url "http://www.ub.edu/softevol/bitacora" .
 
-<https://bio.tools/BITS2018> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0091,
-        edam:topic_0203,
-        edam:topic_3318 ;
-    sc:citation <https://doi.org/10.1186/S12859-019-3175-9>,
-        "pmcid:PMC6873652",
-        "pubmed:31757202" ;
-    sc:description """the fifteenth annual meeting of the Italian Society of Bioinformatics.
-
-This preface introduces the content of the BioMed Central Bioinformatics journal Supplement related to the 15th annual meeting of the Bioinformatics Italian Society, BITS2018. The Conference was held in Torino, Italy, from June 27th to 29th, 2018.
-
-||| HOMEPAGE MISSING!""" ;
-    sc:name "BITS2018" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31757202" .
-
 <https://bio.tools/BJASS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:citation <https://doi.org/10.1177/0962280219864710>,
         "pubmed:31359834" ;
     sc:description "A new joint screening method for right-censored time-to-event data with ultra-high dimensional covariates | Liu, Y., Chen, X., & Li, G. (2019). A new joint screening method for right-censored time-to-event data with ultra-high dimensional covariates. Statistical methods in medical research, 0962280219864710 | This program implements the BJASS joint screening method for DLBCL data (stored in matlab.mat) described in Section 4 of the paper" ;
@@ -7745,7 +6269,7 @@ This preface introduces the content of the BioMed Central Bioinformatics journal
     sc:url "https://github.com/yiucla/BJASS" .
 
 <https://bio.tools/BLANT> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0602 ;
@@ -7760,28 +6284,8 @@ This preface introduces the content of the BioMed Central Bioinformatics journal
     sc:url "https://github.com/waynebhayes/BLANT" ;
     biotools:primaryContact "Wayne B. Hayes" .
 
-<https://bio.tools/BLASTP-ACC> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0078,
-        edam:topic_0080,
-        edam:topic_0081,
-        edam:topic_3297 ;
-    sc:citation <https://doi.org/10.1109/TBCAS.2019.2943539>,
-        "pubmed:31581096" ;
-    sc:description """Parallel Architecture and Hardware Accelerator Design for BLAST-based Protein Sequence Alignment.
-
-In this study, we design a hardware accelerator for a widely used sequence alignment algorithm, the basic local alignment search tool for proteins (BLASTP). The architecture of the proposed accelerator consists of five stages: a new systolic-array-based one-hit finding stage, a novel RAM-REG-based two-hit finding stage, a refined ungapped extension stage, a faster gapped extension stage, and a highly efficient parallel sorter. The system is implemented on an Altera Stratix V FPGA with a processing speed of more than 500 giga cell updates per second (GCUPS). It can receive a query sequence, compare it with the sequences in the database, and generate a list sorted in descending order of the similarity scores between the query sequence and the subject sequences.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'accelerator', 'Altera', 'Stratix', 'RAM-REG-based'""" ;
-    sc:featureList edam:operation_0495,
-        edam:operation_2421,
-        edam:operation_3802 ;
-    sc:name "BLASTP-ACC" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31581096" .
-
 <https://bio.tools/BLINK> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3517,
@@ -7804,7 +6308,7 @@ In this study, we design a hardware accelerator for a widely used sequence align
         "Yao Zhou" .
 
 <https://bio.tools/BLMRM> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2269,
         edam:topic_2885,
@@ -7827,7 +6331,7 @@ This R package provide a powerful and flexiable method (BLMRM) to detect ASE gen
     sc:url "https://github.com/JingXieMIZZOU/BLMRM" .
 
 <https://bio.tools/BLUES> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0176,
         edam:topic_3306,
@@ -7853,7 +6357,7 @@ Gill, S; Lim, N. M.; Grinaway, P.; Rustenburg, A. S.; Fass, J.; Ross, G.; Choder
     sc:url "http://github.com/MobleyLab/blues" .
 
 <https://bio.tools/BMCeasy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0202,
         edam:topic_2840,
@@ -7870,7 +6374,7 @@ Gill, S; Lim, N. M.; Grinaway, P.; Rustenburg, A. S.; Fass, J.; Ross, G.; Choder
     sc:url "http://invitrotox.uni-konstanz.de/BMC/" .
 
 <https://bio.tools/BMEG> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2640,
         edam:topic_3173 ;
@@ -7886,7 +6390,7 @@ Gill, S; Lim, N. M.; Grinaway, P.; Rustenburg, A. S.; Fass, J.; Ross, G.; Choder
     sc:url "http://bmeg.io" .
 
 <https://bio.tools/BMRF-Net> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_2640,
@@ -7903,7 +6407,7 @@ Gill, S; Lim, N. M.; Grinaway, P.; Rustenburg, A. S.; Fass, J.; Ross, G.; Choder
     biotools:primaryContact "Jianhua Xuan" .
 
 <https://bio.tools/BMSS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0749,
@@ -7922,7 +6426,7 @@ Gill, S; Lim, N. M.; Grinaway, P.; Rustenburg, A. S.; Fass, J.; Ross, G.; Choder
     sc:url "http://www.bioeng.nus.edu.sg/engbio/software.html" .
 
 <https://bio.tools/BMTME> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3810,
@@ -7942,30 +6446,8 @@ Gill, S; Lim, N. M.; Grinaway, P.; Rustenburg, A. S.; Fass, J.; Ross, G.; Choder
     sc:url "https://cran.r-project.org/package=BMTME" ;
     biotools:primaryContact "Francisco Javier Luna-Vazquez" .
 
-<https://bio.tools/BMock12> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0196,
-        edam:topic_3077,
-        edam:topic_3174,
-        edam:topic_3673,
-        edam:topic_3837 ;
-    sc:citation <https://doi.org/10.1038/S41597-019-0287-Z>,
-        "pmcid:PMC6879543",
-        "pubmed:31772173" ;
-    sc:description """Shotgun metagenome data of a defined mock community using Oxford Nanopore, PacBio and Illumina technologies.
-
-Metagenomic sequence data from defined mock communities is crucial for the assessment of sequencing platform performance and downstream analyses, including assembly, binning and taxonomic assignment. We report a comparison of shotgun metagenome sequencing and assembly metrics of a defined microbial mock community using the Oxford Nanopore Technologies (ONT) MinION, PacBio and Illumina sequencing platforms. Our synthetic microbial community BMock12 consists of 12 bacterial strains with genome sizes spanning 3.2-7.2 Mbp, 40-73% GC content, and 1.5-7.3% repeats. Size selection of both PacBio and ONT sequencing libraries prior to sequencing was essential to yield comparable relative abundances of organisms among all sequencing technologies.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'ONT', 'PacBio', 'PacBio ONT'""" ;
-    sc:featureList edam:operation_0310,
-        edam:operation_3180,
-        edam:operation_3185,
-        edam:operation_3192,
-        edam:operation_3218 ;
-    sc:name "BMock12" ;
-    sc:url "https://bitbucket.org/volkansevim/bmock12/src/master/" .
-
 <https://bio.tools/BNNR> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0209,
         edam:topic_3377,
         edam:topic_3379 ;
@@ -7977,7 +6459,7 @@ Metagenomic sequence data from defined mock communities is crucial for the asses
     sc:url "https://github.com/BioinformaticsCSU/BNNR" .
 
 <https://bio.tools/BO-LSTM> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0218,
@@ -7997,7 +6479,7 @@ Metagenomic sequence data from defined mock communities is crucial for the asses
     biotools:primaryContact "BioTM" .
 
 <https://bio.tools/BOCS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_2640,
@@ -8016,7 +6498,7 @@ Metagenomic sequence data from defined mock communities is crucial for the asses
     biotools:primaryContact "Lee Korshoj" .
 
 <https://bio.tools/BONITA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3308,
         edam:topic_3336 ;
@@ -8031,7 +6513,7 @@ Metagenomic sequence data from defined mock communities is crucial for the asses
     sc:url "https://github.com/thakar-lab/BONITA" .
 
 <https://bio.tools/BOOSTER> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0084 ;
@@ -8040,7 +6522,7 @@ Metagenomic sequence data from defined mock communities is crucial for the asses
     sc:url "https://booster.pasteur.fr/" .
 
 <https://bio.tools/BORIS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0602,
@@ -8058,21 +6540,8 @@ Transmission network reconstruction for foot-and-mouth disease outbreaks incorpo
     sc:name "BORIS" ;
     sc:url "https://github.com/sfires/BORIS" .
 
-<https://bio.tools/BPRF> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0102,
-        edam:topic_3263 ;
-    sc:citation <https://doi.org/10.1371/JOURNAL.PONE.0225688>,
-        "pmcid:PMC6894850",
-        "pubmed:31805089" ;
-    sc:description """Blockchain-based privacy-preserving reputation framework for participatory sensing systems.
-
-Basic operations of BPRF have been tested and evaluated using the Java Pairing Based Cryptography Library (JPBC, http://gas.dia.unisa.it/projects/jpbc/index.html#.XXePsygzaUk)""" ;
-    sc:featureList edam:operation_3283 ;
-    sc:name "BPRF" ;
-    sc:url "https://github.com/emsecurity/BPRF" .
-
 <https://bio.tools/BPt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3300,
@@ -8091,14 +6560,14 @@ Basic operations of BPRF have been tested and evaluated using the Java Pairing B
 
 <https://bio.tools/BRAPeS> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1383" ;
-            sc:name "Sequence alignment (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1383" ] ;
+            sc:additionalType "http://edamontology.org/data_1383" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Sequence alignment (nucleic acid)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2955" ;
-            sc:name "Sequence report" ;
-            sc:sameAs "http://edamontology.org/data_2955" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2955" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Sequence report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_2830 ;
@@ -8115,39 +6584,16 @@ Basic operations of BPRF have been tested and evaluated using the Java Pairing B
     sc:url "https://github.com/YosefLab/BRAPeS" ;
     biotools:primaryContact "Shaked Afik" .
 
-<https://bio.tools/BRD4_BrD1_Olinone_BrD2_Olinone> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0154,
-        edam:topic_0176,
-        edam:topic_0749,
-        edam:topic_2275,
-        edam:topic_2640 ;
-    sc:citation <https://doi.org/10.1002/PROT.25818>,
-        "pubmed:31587361" ;
-    sc:description """In silico design and molecular basis for the selectivity of Olinone toward the first over the second bromodomain of BRD4.
-
-Bromodomains (BrDs), a conserved structural module in chromatin-associated proteins, are well known for recognizing ε-N-acetyl lysine residues on histones. One of the most relevant BrDs is BRD4, a tandem BrD containing protein (BrD1 and BrD2) that plays a critical role in numerous diseases including cancer. Growing evidence shows that the two BrDs of BRD4 have different biological functions; hence selective ligands that can be used to study their functions are of great interest. Here, as a follow-up of our previous work, we first provide a detailed characterization study of the in silico rational design of Olinone as part of a series of five tetrahydropyrido indole-based compounds as BRD4 BrD1 inhibitors.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'BrD1 Olinone BrD2 Olinone', 'BRD4 BrD1 Olinone BrD2', 'Olinone BrD2 Olinone', 'BrD1 Olinone BrD2'""" ;
-    sc:featureList edam:operation_0244,
-        edam:operation_0394,
-        edam:operation_0478,
-        edam:operation_2476,
-        edam:operation_3893 ;
-    sc:name "BRD4 BrD1 Olinone BrD2 Olinone" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31587361" .
-
 <https://bio.tools/BRIE> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1383" ;
-            sc:name "Sequence alignment (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1383" ] ;
+            sc:additionalType "http://edamontology.org/data_1383" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Sequence alignment (nucleic acid)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2084" ;
-            sc:name "Nucleic acid report" ;
-            sc:sameAs "http://edamontology.org/data_2084" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2084" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Nucleic acid report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3320 ;
     sc:citation <https://doi.org/10.1007/978-1-4939-9057-3_12>,
@@ -8167,7 +6613,7 @@ Bromodomains (BrDs), a conserved structural module in chromatin-associated prote
     biotools:primaryContact "Yuanhua Huang" .
 
 <https://bio.tools/BRM> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0659,
@@ -8191,7 +6637,7 @@ Bromodomains (BrDs), a conserved structural module in chromatin-associated prote
         "Katrina M. Waters" .
 
 <https://bio.tools/BRM-seq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0625,
         edam:topic_0780,
@@ -8209,32 +6655,8 @@ Bromodomains (BrDs), a conserved structural module in chromatin-associated prote
     sc:name "Block Regression Mapping (BRM)" ;
     sc:url "https://github.com/huanglikun/BRM" .
 
-<https://bio.tools/BRM_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0102,
-        edam:topic_0625,
-        edam:topic_0780,
-        edam:topic_2269,
-        edam:topic_2885 ;
-    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTZ861>,
-        "pubmed:31742317" ;
-    sc:description """A statistical method for QTL mapping based on bulked segregant analysis by deep sequencing.
-
-Block Regression Mapping (BRM) is a statistical method for QTL mapping based on bulked segregant analysis by deep sequencing.
-
-Block Regression Mapping (BRM) is a statistical method for QTL mapping based on bulked segregant analysis by deep sequencing. The core function is programmed by R language. For the detailed description of the method, please see the original article "BRM: A statistical method for QTL mapping based on bulked segregant analysis by deep sequencing" (submitted to Bioinformatics).
-
-||| NAME EQUAL TO (PUB. DIFFERENT) bio.tools/BRM""" ;
-    sc:featureList edam:operation_0282,
-        edam:operation_0283,
-        edam:operation_3196,
-        edam:operation_3435,
-        edam:operation_3659 ;
-    sc:license "GPL-3.0" ;
-    sc:name "BRM_autogenerated" ;
-    sc:url "https://github.com/huanglikun/BRM" .
-
 <https://bio.tools/BRUSELAS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0154,
@@ -8257,7 +6679,7 @@ Block Regression Mapping (BRM) is a statistical method for QTL mapping based on
     biotools:primaryContact "Horacio Pérez-Sánchez" .
 
 <https://bio.tools/BSA4Yeast> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0625,
@@ -8279,42 +6701,8 @@ Block Regression Mapping (BRM) is a statistical method for QTL mapping based on
     sc:url "https://bsa4yeast.lcsb.uni.lu" ;
     biotools:primaryContact "Zhi Zhang" .
 
-<https://bio.tools/BSAAs> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0634,
-        edam:topic_3336,
-        edam:topic_3373,
-        edam:topic_3375,
-        edam:topic_3379 ;
-    sc:citation <https://doi.org/10.20944/PREPRINTS201910.0144.V1> ;
-    sc:description """Discovery and Development of Safe-in-Man Broad-Spectrum Antiviral Agents.
-
-Viral diseases are the leading cause of morbidity and mortality in developing countries. Broad-spectrum antiviral agents (BSAA) are key players in control of viral diseases. Here, we reviewed the discovery and development process of BSAAs, focusing on compounds with available safety profiles in human. We summarized the information on approved, investigational and experimental safe-in-man BSAAs in freely accessible database at https: drugvirus.info. The number of these BSAAs will be increased as well as their spectrum of indications will be expanded pending the results of further pre-clinical and clinical studies. This will ultimately reinforce the arsenal of available antiviral options and provide better protection of general population from emerging and re-emerging viral diseases.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'drugvirus', 'safe-in-man BSAAs', 'safe-in-man'""" ;
-    sc:name "BSAAs" ;
-    sc:url "https://doi.org/10.20944/PREPRINTS201910.0144.V1" .
-
-<https://bio.tools/BSAAs_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3324,
-        edam:topic_3336,
-        edam:topic_3373,
-        edam:topic_3375,
-        edam:topic_3379 ;
-    sc:citation <https://doi.org/10.20944/PREPRINTS201910.0144.V2> ;
-    sc:description """Discovery and Development of Safe-in-Man Broad-Spectrum Antiviral Agents.
-
-Viral diseases are one of the leading causes of morbidity and mortality in the world. Broad-spectrum antiviral agents (BSAAs) are key players in control of human viral diseases. Here, we reviewed the discovery and development process of BSAAs, focusing on compounds with available safety profiles in human. In addition, we summarized the information on approved, investigational and experimental safe-in-man BSAAs in freely accessible database at https: drugvirus.info. The number of approved BSAAs will be increased as well as their spectrum of indications will be expanded pending the results of further pre-clinical and clinical studies. This will ultimately reinforce the arsenal of available antiviral options and provide better protection of general population from emerging and re-emerging viral diseases.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'drugvirus', 'safe-in-man BSAAs', 'safe-in-man'""" ;
-    sc:name "BSAAs_autogenerated" ;
-    sc:url "https://doi.org/10.20944/PREPRINTS201910.0144.V2" .
-
 <https://bio.tools/BSGatlas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0659,
         edam:topic_0749,
@@ -8330,34 +6718,8 @@ On this website we provide access to our annotation integration efforts for Baci
     sc:name "BSGatlas" ;
     sc:url "http://rth.dk/resources/bsgatlas" .
 
-<https://bio.tools/BTA18> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0203,
-        edam:topic_0625,
-        edam:topic_0654,
-        edam:topic_3295,
-        edam:topic_3674 ;
-    sc:citation <https://doi.org/10.1186/S12864-019-6228-6>,
-        "pmcid:PMC6873545",
-        "pubmed:31752687" ;
-    sc:description """Analyses of inter-individual variations of sperm DNA methylation and their potential implications in cattle.
-
-This Cattle Quantitative Trait Locus (QTL) Database (Cattle QTLdb) contains cattle QTL and association data curated from published data. The database is designed to facilitate the process for users to compare, confirm, and locate the most plausible location for genes responsible for quantitative traits important to cattle production. We have been striving our best to curate all available data, and adding tools to the QTLdb for users to accomplish many data meta-analysis and comparison tasks.
-
-The current release of the Cattle QTLdb contains 130,407 QTLs associations from 983 publications.
-
-All data by bp (on Btau4.6 in bed format ).
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'HVMRs', 'sperm', 'VMRs', 'CMRs'""" ;
-    sc:featureList edam:operation_0282,
-        edam:operation_3196,
-        edam:operation_3206,
-        edam:operation_3207,
-        edam:operation_3766 ;
-    sc:name "BTA18" ;
-    sc:url "https://www.animalgenome.org/cgi-bin/QTLdb/BT/index" .
-
 <https://bio.tools/BUGSnet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0621,
         edam:topic_3068 ;
@@ -8379,7 +6741,7 @@ BUGSnet is a new feature-rich R package to conduct high-quality Bayesian NMA ana
     sc:url "https://bugsnetsoftware.github.io/" .
 
 <https://bio.tools/BUStools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3308,
@@ -8404,7 +6766,7 @@ BUGSnet is a new feature-rich R package to conduct high-quality Bayesian NMA ana
         "Vasilis Ntranos" .
 
 <https://bio.tools/BWGS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0625 ;
     sc:citation <https://doi.org/10.1101/763037>,
         <https://doi.org/10.1371/journal.pone.0222733>,
@@ -8417,7 +6779,7 @@ BUGSnet is a new feature-rich R package to conduct high-quality Bayesian NMA ana
     sc:url "https://cran.r-project.org/web/packages/BWGS/index.html" .
 
 <https://bio.tools/BWMR> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0625,
         edam:topic_2269,
@@ -8439,7 +6801,7 @@ BWMR (Bayesian Weighted Mendelian Randomization), is an efficient statistical me
     sc:url "https://github.com/jiazhao97/BWMR" .
 
 <https://bio.tools/BWView> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3334 ;
     sc:description "Application designed to view the frequency content of recorded brainwave files. It uses wavelets rather than a conventional FFT to analyse the data for maximum flexibility and resolution." ;
@@ -8452,7 +6814,7 @@ BWMR (Bayesian Weighted Mendelian Randomization), is an efficient statistical me
     biotools:primaryContact "Jim Peters" .
 
 <https://bio.tools/BacFITBase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0736,
         edam:topic_0798,
@@ -8471,7 +6833,7 @@ Host species Any host species Cow (Bos taurus) Chicken (Gallus gallus) Mouse (Mu
     sc:url "http://www.tartaglialab.com/bacfitbase" .
 
 <https://bio.tools/BacHBerryEXP> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0749,
@@ -8489,7 +6851,7 @@ Host species Any host species Cow (Bos taurus) Chicken (Gallus gallus) Mouse (Mu
     sc:url "http://www.bachberryexp.com" .
 
 <https://bio.tools/BacTag> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3305,
@@ -8512,7 +6874,7 @@ Host species Any host species Cow (Bos taurus) Chicken (Gallus gallus) Mouse (Mu
     biotools:primaryContact <https://orcid.org/0000-0002-0218-9092> .
 
 <https://bio.tools/BactMAP> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2229,
         edam:topic_3382 ;
@@ -8522,7 +6884,7 @@ Host species Any host species Cow (Bos taurus) Chicken (Gallus gallus) Mouse (Mu
     sc:url "https://veeninglab.com/bactmap" .
 
 <https://bio.tools/BactSNP> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_2885,
@@ -8543,7 +6905,7 @@ Host species Any host species Cow (Bos taurus) Chicken (Gallus gallus) Mouse (Mu
     biotools:primaryContact "Takehiko Itoh" .
 
 <https://bio.tools/Bagging-SVM> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3373,
         edam:topic_3474 ;
@@ -8554,7 +6916,7 @@ Host species Any host species Cow (Bos taurus) Chicken (Gallus gallus) Mouse (Mu
     sc:url "https://github.com/QUST-AIBBDRC/GA-Bagging-SVM" .
 
 <https://bio.tools/BalLeRMix> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0781,
@@ -8573,22 +6935,20 @@ Host species Any host species Cow (Bos taurus) Chicken (Gallus gallus) Mouse (Mu
 
 <https://bio.tools/Banana_Genome_Hub> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0968" ;
-            sc:name "Keyword" ;
-            sc:sameAs "http://edamontology.org/data_0968" ],
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_0968" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Keyword" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:name "Sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:name "Sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0622,
@@ -8614,7 +6974,7 @@ Host species Any host species Cow (Bos taurus) Chicken (Gallus gallus) Mouse (Mu
     biotools:primaryContact <https://orcid.org/0000-0003-1849-1269> .
 
 <https://bio.tools/Barnaba> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0097,
@@ -8634,7 +6994,7 @@ Host species Any host species Cow (Bos taurus) Chicken (Gallus gallus) Mouse (Mu
     biotools:primaryContact "Small RNAs in silico" .
 
 <https://bio.tools/BasePlayer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_3325,
@@ -8659,7 +7019,7 @@ Host species Any host species Cow (Bos taurus) Chicken (Gallus gallus) Mouse (Mu
     biotools:primaryContact "Riku Katainen" .
 
 <https://bio.tools/BatMeth2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0654,
@@ -8681,7 +7041,7 @@ Host species Any host species Cow (Bos taurus) Chicken (Gallus gallus) Mouse (Mu
     biotools:primaryContact "Guoliang Li" .
 
 <https://bio.tools/BayICE> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_2640,
         edam:topic_3308 ;
@@ -8692,28 +7052,8 @@ Host species Any host species Cow (Bos taurus) Chicken (Gallus gallus) Mouse (Mu
     sc:name "BayICE" ;
     sc:url "https://github.com/AshTai/BayICE" .
 
-<https://bio.tools/BayesMetab> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0121,
-        edam:topic_0154,
-        edam:topic_2269,
-        edam:topic_3172,
-        edam:topic_3518 ;
-    sc:citation <https://doi.org/10.1186/S12859-019-3250-2>,
-        "pmcid:PMC6923847",
-        "pubmed:31861984" ;
-    sc:description """Treatment of missing values in metabolomic studies using a Bayesian modeling approach.
-
-BACKGROUND:With the rise of metabolomics, the development of methods to address analytical challenges in the analysis of metabolomics data is of great importance. Missing values (MVs) are pervasive, yet the treatment of MVs can have a substantial impact on downstream statistical analyses. The MVs problem in metabolomics is quite challenging and can arise because the metabolite is not biologically present in the sample, or is present in the sample but at a concentration below the lower limit of detection (LOD), or is present in the sample but undetected due to technical issues related to sample pre-processing steps. The former is considered missing not at random (MNAR) while the latter is an example of missing at random (MAR). Typically, such MVs are substituted by a minimum value, which may lead to severely biased results in downstream analyses.
-
-||| HOMEPAGE MISSING!""" ;
-    sc:featureList edam:operation_3435,
-        edam:operation_3557,
-        edam:operation_3658 ;
-    sc:name "BayesMetab" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31861984" .
-
 <https://bio.tools/BayesPI-BAR2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0749,
@@ -8732,23 +7072,8 @@ BACKGROUND:With the rise of metabolomics, the development of methods to address
     biotools:primaryContact "Junbai Wang",
         "Kirill Batmanov" .
 
-<https://bio.tools/Bayesian> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_2269,
-        edam:topic_3325,
-        edam:topic_3379 ;
-    sc:citation <https://doi.org/10.1002/SIM.8414>,
-        "pubmed:31799737" ;
-    sc:description """Optimizing interim analysis timing for Bayesian adaptive commensurate designs.
-
-R package for "Optimizing Interim Analysis Timing for Bayesian Adaptive Commensurate Designs". A innovative Bayesian adaptive commensurate designs that borrows adaptively from historical information and also uses a payoff function to optimize the timing of the study’s interim analysis.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'optimIA'""" ;
-    sc:featureList edam:operation_3435 ;
-    sc:name "Bayesian" ;
-    sc:url "https://github.com/wxwx1993/Bayesian_IA_Timing" .
-
 <https://bio.tools/BayesianPredictiveFutility> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3379 ;
     sc:citation <https://doi.org/10.21037/TCR.2019.05.17>,
@@ -8759,22 +7084,8 @@ R package for "Optimizing Interim Analysis Timing for Bayesian Adaptive Commensu
     sc:name "BayesianPredictiveFutility" ;
     sc:url "https://github.com/dungtsa/BayesianPredictiveFutility" .
 
-<https://bio.tools/Bayesian_metabolic_flux_analysis> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0602,
-        edam:topic_2269,
-        edam:topic_3407 ;
-    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTZ315>,
-        "pmcid:PMC6612884",
-        "pubmed:31510676" ;
-    sc:description "> VERY_LOW CONFIDENCE! | > CORRECT NAME OF TOOL COULD ALSO BE 'balance methods FBA', 'flux', 'FBA', 'flux couplings' | Bayesian metabolic flux analysis reveals intracellular flux couplings | Bayesian metabolic flux analysis | Bayesian Metabolic Flux Analysis MATLAB package by Markus Heinonen, Maria Osmala, Henrik Mannerström, Juho Rousu, Samuel Kaski and Harri Lähdesmäki from the CSB research group of Aalto University" ;
-    sc:featureList edam:operation_2238,
-        edam:operation_2940,
-        edam:operation_3660 ;
-    sc:name "Bayesian metabolic flux analysis" ;
-    sc:url "http://github.com/markusheinonen/bamfa" .
-
 <https://bio.tools/Bazam> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102 ;
     sc:citation <https://doi.org/10.1186/s13059-019-1688-1>,
@@ -8794,7 +7105,7 @@ R package for "Optimizing Interim Analysis Timing for Bayesian Adaptive Commensu
     biotools:primaryContact "Simon Sadedin" .
 
 <https://bio.tools/Bcool> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0102,
         edam:topic_0196,
@@ -8816,7 +7127,7 @@ Bcool clone and compile Bcalm2 Bgreat2 Btrim and Ntcard""" ;
     sc:url "http://github.com/Malfoy/BCOOL" .
 
 <https://bio.tools/BeamDelta> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0196,
         edam:topic_3068,
@@ -8837,44 +7148,23 @@ We include a suggested parts list in BeamDelta-parts-list.csv which enables the
     sc:name "BeamDelta" ;
     sc:url "https://github.com/MicronOxford/BeamDelta" .
 
-<https://bio.tools/BeamDelta_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0081,
-        edam:topic_0196,
-        edam:topic_3385 ;
-    sc:citation <https://doi.org/10.12688/WELLCOMEOPENRES.15576.1> ;
-    sc:description """simple alignment tool for optical systems.
-
-BeamDelta is a tool to help align optical systems. It greatly assists in assembling bespoke optical systems by providing a live view of the current laser beam position and a reference position. Even a simple optical setup has multiple degrees of freedom that affect the alignment of beam paths. These degrees of freedom rise exponentially with the complexity of the system. The process of aligning all the optical components for a specific system is often esoteric and poorly documented, if it is documented at all. Alignment methods used often rely on visual inspection of beams impinging on pinholes in the beam path, typically requiring an experienced operator staring at diffuse reflections for extended periods of time. This can lead to a decline in accuracy due to eye strain, flash blindness as well as symptoms such as headaches and, possibly, more serious retinal damage.
-
-||| HOMEPAGE MISSING!""" ;
-    sc:featureList edam:operation_0295,
-        edam:operation_0310,
-        edam:operation_3435 ;
-    sc:name "BeamDelta_autogenerated" ;
-    sc:url "https://doi.org/10.12688/WELLCOMEOPENRES.15576.1" .
-
 <https://bio.tools/BeanMine> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ],
+            sc:additionalType "http://edamontology.org/data_2353" ;
+            sc:name "Ontology data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2353" ;
-            sc:name "Ontology data" ;
-            sc:sameAs "http://edamontology.org/data_2353" ] ;
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:name "Sequence features" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ],
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:name "Sequence features" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3753" ;
-            sc:name "Over-representation data" ;
-            sc:sameAs "http://edamontology.org/data_3753" ],
+            sc:additionalType "http://edamontology.org/data_3786" ;
+            sc:name "Query script" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3786" ;
-            sc:name "Query script" ;
-            sc:sameAs "http://edamontology.org/data_3786" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3753" ;
+            sc:name "Over-representation data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application",
         "Web service" ;
@@ -8897,25 +7187,8 @@ BeamDelta is a tool to help align optical systems. It greatly assists in assembl
     sc:softwareVersion "0.10" ;
     sc:url "https://mines.legumeinfo.org/beanmine" .
 
-<https://bio.tools/BehavioR> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3063,
-        edam:topic_3305,
-        edam:topic_3394 ;
-    sc:citation <https://doi.org/10.4103/2224-3151.264854>,
-        "pubmed:31441445" ;
-    sc:description "> LOW CONFIDENCE! | > CORRECT NAME OF TOOL COULD ALSO BE 'behavioural addictions' | a digital platform for prevention and management of behavioural addictions | Behavioral addictions Resource hub-" ;
-    sc:name "BehavioR" ;
-    sc:url "http://www.behavior.co.in" .
-
-<https://bio.tools/Behavioral_Artistry> a sc:SoftwareApplication ;
-    sc:citation <https://doi.org/10.1007/S10803-019-04196-6>,
-        "pubmed:31463629" ;
-    sc:description "> LOW CONFIDENCE! | > HOMEPAGE MISSING! | > CORRECT NAME OF TOOL COULD ALSO BE 'Practitioners', 'forthwith', 'Interpersonal' | Examining the Relationship Between the Interpersonal Skills and Effective Practice Repertoires of Applied Behavior Analysis Practitioners | The article Behavioral Artistry: Examining the Relationship Between the Interpersonal Skills and Effective Practice Repertoires of Applied Behavior Analysis Practitioners, written by Kevin Callahan, was originally published electronically on the publisher's internet portal (currently SpringerLink) on August 29, 2019 without open access" ;
-    sc:name "Behavioral Artistry" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31463629" .
-
 <https://bio.tools/Bellerophon> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0769,
         edam:topic_3170,
@@ -8936,34 +7209,8 @@ The pipeline can be downloaded as a vragrant virtual machine (https://app.vagran
     sc:name "Bellerophon" ;
     sc:url "https://github.com/JesseKerkvliet/Bellerophon" .
 
-<https://bio.tools/BenMAP-CE> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0102,
-        edam:topic_3314,
-        edam:topic_3318 ;
-    sc:citation <https://doi.org/10.1016/J.DIB.2019.104886>,
-        "pmcid:PMC6911961",
-        "pubmed:31872009" ;
-    sc:description """A database for evaluating the InMAP, APEEP, and EASIUR reduced complexity air-quality modeling tools.
-
-Environmental Benefits Mapping and Analysis Program.
-
-An official website of the United States government.
-
-We've made some changes to EPA.gov . If the information you are looking for is not here, you may be able to find it on the EPA Web Archive or the January 19, 2017 Web Snapshot .
-
-United States Environmental Protection Agency.
-
-BenMAP-CE is an open-source computer program that calculates the number and economic value of air pollution-related deaths and illnesses. The software incorporates a database that includes many of the concentration-response relationships, population files, and health and economic data needed to quantify these impacts.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'RFMEVAL', 'CMAQ', 'Air Pollution', 'CAMx'""" ;
-    sc:featureList edam:operation_2426,
-        edam:operation_3096,
-        edam:operation_3659 ;
-    sc:name "BenMAP-CE" ;
-    sc:url "https://www.epa.gov/benmap" .
-
 <https://bio.tools/Benchmarker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0602,
@@ -8985,7 +7232,7 @@ BenMAP-CE is an open-source computer program that calculates the number and econ
         "Rebecca Fine" .
 
 <https://bio.tools/BetaSerpentine> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0154,
@@ -9005,28 +7252,8 @@ BenMAP-CE is an open-source computer program that calculates the number and econ
     biotools:primaryContact "Andrey V. Kajava",
         "Stanislav A. Bondarev" .
 
-<https://bio.tools/Beyond_taxonomic_identification> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0605,
-        edam:topic_0610,
-        edam:topic_0637,
-        edam:topic_0659,
-        edam:topic_3168 ;
-    sc:citation <https://doi.org/10.1101/843847> ;
-    sc:description """integration of ecological responses to a soil bacterial 16S rRNA gene database.
-
-Abstract High-throughput sequencing 16S rRNA gene surveys have enabled new insights into the diversity of soil bacteria, and furthered understanding of the ecological drivers of abundances across landscapes. However, current analytical approaches are of limited use in formalising syntheses of the ecological attributes of taxa discovered, because derived taxonomic units are typically unique to individual studies and sequence identification databases only characterise taxonomy. To address this, we used sequences obtained from a large nationwide soil survey (GB Countryside Survey, henceforth CS) to create a comprehensive soil specific 16S reference database, with coupled ecological information derived from the survey metadata.
-
-||| HOMEPAGE BROKEN!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'ID-TaxER'""" ;
-    sc:featureList edam:operation_0224,
-        edam:operation_3200,
-        edam:operation_3659 ;
-    sc:name "Beyond taxonomic identification" ;
-    sc:url "https://shiny-apps.ceh.ac.uk/ID-35" .
-
 <https://bio.tools/BiAlign> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0097,
@@ -9049,7 +7276,7 @@ Abstract High-throughput sequencing 16S rRNA gene surveys have enabled new insig
         "Sebastian Will" .
 
 <https://bio.tools/BiG-SCAPE> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0091,
@@ -9071,7 +7298,7 @@ BiG-SCAPE and CORASON provide a set of tools to explore the diversity of biosynt
     sc:url "https://bigscape-corason.secondarymetabolites.org" .
 
 <https://bio.tools/BiGG_Models> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0602,
@@ -9091,7 +7318,7 @@ BiGG Models is a knowledgebase of genome-scale metabolic network reconstructions
     sc:url "http://bigg.ucsd.edu" .
 
 <https://bio.tools/BiSpark> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3295,
@@ -9112,7 +7339,7 @@ BiGG Models is a knowledgebase of genome-scale metabolic network reconstructions
     sc:url "https://github.com/bhi-kimlab/BiSpark/" .
 
 <https://bio.tools/BiTSC> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
         edam:topic_3170,
@@ -9131,7 +7358,7 @@ $ python3 BiTSC.py ./data/orthologs_data_uniq.csv ./data/dm_timecourse_FPKMs.csv
     sc:url "https://github.com/edensunyidan/BiTSC" .
 
 <https://bio.tools/BiWalkLDA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0602,
         edam:topic_0634,
@@ -9155,7 +7382,7 @@ normFun.m: Laplacian normalization""" ;
     sc:url "https://github.com/screamer/BiwalkLDA" .
 
 <https://bio.tools/BiasDB> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0202,
         edam:topic_0209 ;
@@ -9167,7 +7394,7 @@ normFun.m: Laplacian normalization""" ;
     sc:url "https://biasdb.drug-design.de/" .
 
 <https://bio.tools/BigStitcher> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3382,
         edam:topic_3500 ;
     sc:citation <https://doi.org/10.1038/S41592-019-0501-0>,
@@ -9181,7 +7408,7 @@ normFun.m: Laplacian normalization""" ;
     sc:url "https://imagej.net/BigStitcher" .
 
 <https://bio.tools/Bigram-PGK> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
         edam:topic_0601 ;
@@ -9202,7 +7429,7 @@ Preprocessing_BigramPGK.m file was used to carry out preprocessing for Bigram_PG
     sc:url "https://github.com/abelavit/Bigram-PGK" .
 
 <https://bio.tools/BinDash> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0199,
@@ -9220,7 +7447,7 @@ Preprocessing_BigramPGK.m file was used to carry out preprocessing for Bigram_PG
     biotools:primaryContact "XiaoFei Zhao" .
 
 <https://bio.tools/BindSpace> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3169,
         edam:topic_3179 ;
@@ -9235,7 +7462,7 @@ Preprocessing_BigramPGK.m file was used to carry out preprocessing for Bigram_PG
     sc:url "https://bitbucket.org/hy395/bindspace" .
 
 <https://bio.tools/Binner> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0154,
@@ -9250,7 +7477,7 @@ It takes a numerical feature table obtained from any preprocessing software (e.g
     sc:url "http://binner.med.umich.edu" .
 
 <https://bio.tools/Bio-DIA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_2258,
         edam:topic_3372 ;
@@ -9261,7 +7488,7 @@ It takes a numerical feature table obtained from any preprocessing software (e.g
     sc:url "https://ucrania.imd.ufrn.br/biodia-app/" .
 
 <https://bio.tools/Bio2BEL> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0602,
@@ -9282,7 +7509,7 @@ It takes a numerical feature table obtained from any preprocessing software (e.g
     biotools:primaryContact "Charles Tapley Hoyt" .
 
 <https://bio.tools/BioBERT> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0218,
         edam:topic_3303 ;
@@ -9295,7 +7522,7 @@ It takes a numerical feature table obtained from any preprocessing software (e.g
     sc:url "https://github.com/naver/biobert-pretrained" .
 
 <https://bio.tools/BioCell2XML> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3382 ;
     sc:citation <https://doi.org/10.1007/S00427-019-00633-9>,
@@ -9314,7 +7541,7 @@ It takes a numerical feature table obtained from any preprocessing software (e.g
         "Markus Pennerstorfer" .
 
 <https://bio.tools/BioEn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0176,
         edam:topic_0593,
@@ -9334,7 +7561,7 @@ BioEn integrates a broad range of experimental data to refine ensembles of struc
     sc:url "http://github.com/bio-phys/BioEn" .
 
 <https://bio.tools/BioEra> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3315,
         edam:topic_3382 ;
@@ -9347,22 +7574,8 @@ BioEn integrates a broad range of experimental data to refine ensembles of struc
     sc:softwareHelp <http://www.proatech.com/be/manual.html> ;
     sc:url "http://bioera.net/" .
 
-<https://bio.tools/BioExcel_Building_Blocks> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0769,
-        edam:topic_3316,
-        edam:topic_3892 ;
-    sc:citation <https://doi.org/10.1038/S41597-019-0177-4>,
-        "pmcid:PMC6736963",
-        "pubmed:31506435" ;
-    sc:description "> LOW CONFIDENCE! | software library for interoperable biomolecular simulation workflows | Centre of Excellence for Computational Biomolecular Research | Supporting the Pharmaceutical Industry: BioExcel experts visit AstraZeneca site in Sweden | Hear from our 2019 BioExcel/PRACE Seasonal School travel grant beneficiaries" ;
-    sc:featureList edam:operation_0478,
-        edam:operation_2476,
-        edam:operation_3431 ;
-    sc:name "BioExcel Building Blocks" ;
-    sc:url "http://bioexcel.eu" .
-
 <https://bio.tools/BioExplorer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3334 ;
     sc:description "Program for real-time biophysical data acquisition, processing, and display." ;
@@ -9376,7 +7589,7 @@ BioEn integrates a broad range of experimental data to refine ensembles of struc
     sc:url "http://www.cyberevolution.com/" .
 
 <https://bio.tools/BioFabric> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0602,
         edam:topic_3474,
@@ -9390,7 +7603,7 @@ BioEn integrates a broad range of experimental data to refine ensembles of struc
     sc:url "https://github.com/wjrl/BioFabric" .
 
 <https://bio.tools/BioGRID_Open_Repository_of_CRISPR_Screens_ORCS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_3053 ;
     sc:citation <https://doi.org/10.1093/nar/gky1079>,
@@ -9408,7 +7621,7 @@ BioEn integrates a broad range of experimental data to refine ensembles of struc
     sc:url "https://orcs.thebiogrid.org/" .
 
 <https://bio.tools/BioGateway> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "SPARQL endpoint" ;
     sc:applicationSubCategory edam:topic_0089,
@@ -9429,7 +7642,7 @@ BioEn integrates a broad range of experimental data to refine ensembles of struc
     sc:url "https://www.biogateway.eu/" .
 
 <https://bio.tools/BioGears_Engine> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3300,
         edam:topic_3314,
@@ -9450,7 +7663,7 @@ BioEn integrates a broad range of experimental data to refine ensembles of struc
     sc:url "https://biogearsengine.com/" .
 
 <https://bio.tools/BioMedR> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0154,
         edam:topic_2258,
@@ -9476,14 +7689,14 @@ Calculating 293 chemical descriptors and 14 kinds of chemical fingerprints, 9920
 
 <https://bio.tools/BioMercator> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1860" ;
-            sc:name "QTL map" ;
-            sc:sameAs "http://edamontology.org/data_1860" ],
+            sc:additionalType "http://edamontology.org/data_1860" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "QTL map" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1288" ;
-            sc:name "Genome map" ;
-            sc:sameAs "http://edamontology.org/data_1288" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1288" ;
+            sc:encodingFormat "http://edamontology.org/format_1975" ;
+            sc:name "Genome map" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0780,
         edam:topic_3055 ;
@@ -9501,7 +7714,7 @@ Calculating 293 chemical descriptors and 14 kinds of chemical fingerprints, 9920
     sc:url "https://sourcesup.renater.fr/projects/biomercator" .
 
 <https://bio.tools/BioMethyl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3295,
@@ -9522,7 +7735,7 @@ Calculating 293 chemical descriptors and 14 kinds of chemical fingerprints, 9920
         "Yue Wang" .
 
 <https://bio.tools/BioMine-DB> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0084,
         edam:topic_0154,
@@ -9534,20 +7747,8 @@ Biomineralization is the process by which living organisms construct hard skelet
     sc:name "BioMine-DB" ;
     sc:url "http://biomine.net/" .
 
-<https://bio.tools/BioNER_cross-sharing> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0218,
-        edam:topic_0602,
-        edam:topic_3474 ;
-    sc:citation <https://doi.org/10.1186/S12859-019-3000-5>,
-        "pmcid:PMC6697996",
-        "pubmed:31419937" ;
-    sc:description "> MEDIUM CONFIDENCE! | > CORRECT NAME OF TOOL COULD ALSO BE 'biomedical named entity recognition cross-sharing' | Multitask learning for biomedical named entity recognition with cross-sharing structure | This repository is a Biomedical Named Entity Recognition model. The code is based on XuezheMax/NeuroNLP2 | Python 3+, PyTorch < 1.0, Gensim >= 0.12.0 | In the root of the repository, first make the tmp directory:" ;
-    sc:featureList edam:operation_3280 ;
-    sc:name "BioNER cross-sharing" ;
-    sc:url "https://github.com/JogleLew/bioner-cross-sharing" .
-
 <https://bio.tools/BioNet-Mining> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0602,
@@ -9566,7 +7767,7 @@ The repository contains the scripts for a workflow that identifies frequent stru
     sc:url "https://github.com/FabienneL/BioNet-Mining" .
 
 <https://bio.tools/BioNix> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0769 ;
@@ -9579,23 +7780,8 @@ The repository contains the scripts for a workflow that identifies frequent stru
     sc:url "http://github.com/PapenfussLab/bionix" ;
     biotools:primaryContact "Mailing list" .
 
-<https://bio.tools/BioSCOOP> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3071,
-        edam:topic_3337,
-        edam:topic_3372 ;
-    sc:citation <https://doi.org/10.1093/DATABASE/BAZ105>,
-        "pmcid:PMC6791335",
-        "pubmed:31609452" ;
-    sc:description """Biobank Sample Communication Protocol. New approach for the transfer of information between biobanks.
-
-The idea behind BioSCOOP is to create a standard of information interchange for Biobanks. Similar ideas are already present, however are not very widespread and their development pace doesn’t seem to be very fast. BioSCOOP is not supposed to be yet another Biobank data format, it aims to provide the data format together with the methods of data interchange. BioSCOOP is created with following principles in mind: It should conform to the modern IT industrial standards. It should not be tightly coupled to any specific programming language or data storage. It should be easy to integrate BioSCOOP capabilities into existing BBMS""" ;
-    sc:featureList edam:operation_2421,
-        edam:operation_3435 ;
-    sc:name "BioSCOOP" ;
-    sc:url "https://github.com/BiobankLab/BioSCOOP" .
-
 <https://bio.tools/BioStructMap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script",
         "Web application",
         "Web service" ;
@@ -9619,7 +7805,7 @@ The idea behind BioSCOOP is to create a standard of information interchange for
         "Dr. Paul Ramsland" .
 
 <https://bio.tools/BioSwitch> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3070 ;
     sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTZ746>,
@@ -9635,7 +7821,7 @@ BioSwitch is a Matlab software tool for detection of multi-steady state behaviou
     sc:url "https://sites.google.com/view/bioswitch" .
 
 <https://bio.tools/Biobtree> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0780,
         edam:topic_3489,
         edam:topic_3500 ;
@@ -9647,7 +7833,7 @@ BioSwitch is a Matlab software tool for detection of multi-steady state behaviou
     sc:url "https://www.github.com/tamerh/biobtree" .
 
 <https://bio.tools/BiocPkgTools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0218,
@@ -9668,7 +7854,7 @@ BioSwitch is a Matlab software tool for detection of multi-steady state behaviou
     biotools:primaryContact "Sean Davis" .
 
 <https://bio.tools/BiofilmQ> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3382,
         edam:topic_3697,
         edam:topic_3810 ;
@@ -9681,7 +7867,7 @@ BioSwitch is a Matlab software tool for detection of multi-steady state behaviou
     sc:url "https://drescherlab.org/data/biofilmQ" .
 
 <https://bio.tools/Bioinformatics_Docker_Images_Project> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application",
         "Suite",
@@ -9707,7 +7893,7 @@ BioSwitch is a Matlab software tool for detection of multi-steady state behaviou
     biotools:primaryContact <https://orcid.org/0000-0001-7032-5220> .
 
 <https://bio.tools/BiomeNet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0621,
         edam:topic_0780,
@@ -9727,34 +7913,15 @@ BiomeNet is a database of scored functional networks enabling network biology fo
     sc:name "BiomeNet" ;
     sc:url "http://kobic.re.kr/biomenet/" .
 
-<https://bio.tools/BiomeSeq> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0781,
-        edam:topic_3174,
-        edam:topic_3500,
-        edam:topic_3697,
-        edam:topic_3837 ;
-    sc:citation <https://doi.org/10.1101/800995> ;
-    sc:description """A Tool for the Characterization of Animal Microbiomes from Metagenomic Data.
-
-Abstract The complete characterization of a microbiome is critical in elucidating the complex ecology of the microbial composition within healthy and diseased animals. Many microbiome studies characterize only the bacterial component, for which there are several well-developed sequencing methods, bioinformatics tools and databases available. The lack of comprehensive bioinformatics workflows and databases have limited efforts to characterize the other components existing in a microbiome. BiomeSeq is a tool for the analysis of the complete animal microbiome using metagenomic sequencing data. With its comprehensive workflow, customizable parameters and microbial databases, BiomeSeq can rapidly quantify the viral, fungal, bacteriophage and bacterial components of a sample and produce informative tables for analysis.
-
-||| HOMEPAGE MISSING!""" ;
-    sc:featureList edam:operation_3211,
-        edam:operation_3435,
-        edam:operation_3799 ;
-    sc:name "BiomeSeq" ;
-    sc:url "https://doi.org/10.1101/800995" .
-
 <https://bio.tools/BiomeShiny> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2080" ;
-            sc:name "Database search results" ;
-            sc:sameAs "http://edamontology.org/data_2080" ] ;
+            sc:additionalType "http://edamontology.org/data_2080" ;
+            sc:encodingFormat "http://edamontology.org/format_3746" ;
+            sc:name "Database search results" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3174 ;
     sc:description "A Shiny R app for microbiome visualization, built around the \"microbiome\" package." ;
@@ -9768,7 +7935,7 @@ Abstract The complete characterization of a microbiome is critical in elucidatin
     sc:url "https://github.com/BioData-PT/Biome-Shiny" .
 
 <https://bio.tools/BiomineExplorer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:author "Vid Podpečan" ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btz509> ;
@@ -9788,7 +7955,7 @@ The most prominent feature of Biomine Explorer is interactive exploration of its
     biotools:primaryContact "Vid Podpečan" .
 
 <https://bio.tools/Bionitio> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0102 ;
     sc:citation <https://doi.org/10.1093/GIGASCIENCE/GIZ109>,
@@ -9801,7 +7968,7 @@ The most prominent feature of Biomine Explorer is interactive exploration of its
     sc:url "https://github.com/bionitio-team/bionitio" .
 
 <https://bio.tools/BitEpi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2885,
         edam:topic_3518 ;
@@ -9820,7 +7987,7 @@ BitEpi performs an exhaustive search that means it tests all possible combinatio
     sc:url "https://github.com/aehrc/BitEpi" .
 
 <https://bio.tools/BitterSweet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3474,
@@ -9844,7 +8011,7 @@ BitEpi performs an exhaustive search that means it tests all possible combinatio
     biotools:primaryContact <https://orcid.org/0000-0003-1924-6070> .
 
 <https://bio.tools/BlackSheep> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -9880,44 +8047,8 @@ Requirements (automatically taken care of with pip and conda)""" ;
     sc:softwareHelp <https://blacksheep.readthedocs.io/en/master/> ;
     sc:url "https://github.com/ruggleslab/blackSheep" .
 
-<https://bio.tools/BlastGUIA> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0080,
-        edam:topic_0081,
-        edam:topic_3489 ;
-    sc:citation <https://doi.org/10.1002/MINF.201900120>,
-        "pubmed:31650686" ;
-    sc:description """BlastGUI：A Python-Based Cross-Platform Local BLAST Visualization Software.
-
-A Python-based Cross-platform Local Blast Visualization Software.
-
-BlastGUI is A Python-Based Cross-Platform Local BLAST Visualization Software.
-
-Users can build databases and perform sequence filtering and sequence alignment through a graphical user interface. The operation visualization, automatic sequence filtering, and cross-platform use can significantly facilitate the analysis of biological data and the mining of biological information.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'BlastGUI', 'BlastGUI:A Python-Based Cross-Platform', 'BlastGUI:A Python-Based Cross-Platform Local', 'BlastGUI:A Python-Based Cross-Platform Local BLAST'""" ;
-    sc:featureList edam:operation_0292,
-        edam:operation_0337,
-        edam:operation_3695 ;
-    sc:license "GPL-3.0" ;
-    sc:name "BlastGUI:A" ;
-    sc:url "https://github.com/byemaxx/BlastGUI" .
-
-<https://bio.tools/BlobServlet> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0634,
-        edam:topic_2640,
-        edam:topic_2840,
-        edam:topic_3168,
-        edam:topic_3305 ;
-    sc:citation <https://doi.org/10.5271/SJWEH.3864>,
-        "pubmed:31720691" ;
-    sc:description """occupational exposure limits are insufficiently protecting individual worker health.
-
-In an editorial in an earlier issue of this journal, Johanson & Tinnerberg (1) expressed serious and well-founded concern over the large number of future occupational cancer cases that will result if exposures for a number of substances are not reduced below the so-called "binding occupational exposure limit values" (BOELV) issued by the EU (2). The balance between what is perceived as possible to comply with and the foreseeable health gain when setting BOELV is further discussed in a letter to the Editor by Cherrie (3). This debate raises several important aspects of how to protect workers from cancer as well as other potentially lethal diseases. Herewith, we discuss some of these aspects. One problem in setting OEL is that levels that are considered safe may not be seen as feasible when accounting for technological and societal aspects""" ;
-    sc:name "BlobServlet" ;
-    sc:url "http://ec.europa.eu/social/BlobServlet?docId=10161&langId=en" .
-
 <https://bio.tools/BlobToolKit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0194,
         edam:topic_0196,
@@ -9938,49 +8069,8 @@ In an editorial in an earlier issue of this journal, Johanson & Tinnerberg (1) e
     sc:name "BlobToolKit" ;
     sc:url "https://blobtoolkit.genomehubs.org/view" .
 
-<https://bio.tools/Blockchain> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0102,
-        edam:topic_3394,
-        edam:topic_3474,
-        edam:topic_3489,
-        edam:topic_3810 ;
-    sc:citation <https://doi.org/10.20944/PREPRINTS201811.0537.V1> ;
-    sc:description """An Exploration into the Opportunities for Blockchain in the Fresh Produce Supply Chain.
-
-Festival of Content & Collaboration.
-
-Blockchain Live 2020 is a festival of content & collaboration, driving discussion & debate on how best to accelerate global adoption of blockchain & DLT.
-
-Blockchain Live is a ground-breaking festival of content and collaboration that connects the fragmented ecosystem to drive meaningful discussion and debate on how best to accelerate global adoption of blockchain.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'Bitcoin'""" ;
-    sc:featureList edam:operation_2422,
-        edam:operation_3435 ;
-    sc:name "Blockchain" ;
-    sc:url "http://www.blockchainlive.com" .
-
-<https://bio.tools/Boa> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0102,
-        edam:topic_3372 ;
-    sc:citation <https://doi.org/10.7287/PEERJ.PREPRINTS.1920V2> ;
-    sc:description """Analysis of Test Driven Development on sentiment and coding activities in GitHub repositories.
-
-Public Information for Job 30188.
-
-Mining Ultra-Large-Scale Software Repositories.
-
-Nov '18 : Boa hits over 1,000 users!.
-
-Oct '19 : new 2019-10 dataset including support for advanced static program analysis !.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'sentiment', 'TDD', '256572', 'TDD repositories'""" ;
-    sc:featureList edam:operation_1812,
-        edam:operation_3096 ;
-    sc:name "Boa" ;
-    sc:url "http://boa.cs.iastate.edu/boa/?q=boa/job/public/30188" .
-
 <https://bio.tools/Bolt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -9998,26 +8088,21 @@ Oct '19 : new 2019-10 dataset including support for advanced static program anal
 
 <https://bio.tools/BovineMine> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2353" ;
-            sc:name "Ontology data" ;
-            sc:sameAs "http://edamontology.org/data_2353" ],
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:name "Sequence features" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ] ;
+            sc:additionalType "http://edamontology.org/data_2353" ;
+            sc:name "Ontology data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3786" ;
-            sc:name "Query script" ;
-            sc:sameAs "http://edamontology.org/data_3786" ],
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:name "Sequence features" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3753" ;
-            sc:name "Over-representation data" ;
-            sc:sameAs "http://edamontology.org/data_3753" ],
+            sc:additionalType "http://edamontology.org/data_3753" ;
+            sc:name "Over-representation data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3786" ;
+            sc:name "Query script" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application",
         "Web service" ;
@@ -10040,30 +8125,8 @@ Oct '19 : new 2019-10 dataset including support for advanced static program anal
     sc:softwareVersion "1.4" ;
     sc:url "http://genomes.missouri.edu/bovinemine" .
 
-<https://bio.tools/Bovine_Genome_Database> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0196,
-        edam:topic_0602,
-        edam:topic_0621,
-        edam:topic_0622 ;
-    sc:citation <https://doi.org/10.1093/NAR/GKZ944>,
-        "pubmed:31647100" ;
-    sc:description """new annotation tools for a new reference genome.
-
-The Bovine Genome Database supports the efforts of bovine genomics researchers by providing data mining, genome navigation and annotation tools for the bovine reference genome based on the hereford cow, L1 Dominette 01449.
-
-||| COMMON LINK WITH (PUB. & NAME DIFFERENT) bio.tools/bgd (BOVINEGENOME.ORG).
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'LSAA'""" ;
-    sc:featureList edam:operation_0362,
-        edam:operation_0525,
-        edam:operation_2421,
-        edam:operation_2422,
-        edam:operation_3208 ;
-    sc:name "Bovine Genome Database" ;
-    sc:url "http://bovinegenome.org" .
-
 <https://bio.tools/BowSaw> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0634,
@@ -10078,7 +8141,7 @@ The Bovine Genome Database supports the efforts of bovine genomics researchers b
     sc:url "https://github.com/ddimucci/BowSaw" .
 
 <https://bio.tools/BrainBay> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3334 ;
     sc:description "Bio and Neurofeedback Application, designed to work with various Electroencephalography (EEG) amplifiers. It supports Human-Computer-Interface functions and NeuroServer Software Framework to transmit live recordings via Internet or LAN." ;
@@ -10095,7 +8158,7 @@ The Bovine Genome Database supports the efforts of bovine genomics researchers b
     biotools:primaryContact "Chris Veigl" .
 
 <https://bio.tools/BrainSpace> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3304,
         edam:topic_3334,
         edam:topic_3384 ;
@@ -10111,7 +8174,7 @@ The Bovine Genome Database supports the efforts of bovine genomics researchers b
     sc:url "http://github.com/MICA-MNI/BrainSpace" .
 
 <https://bio.tools/Brain_interactome_explorer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
         edam:topic_2229,
@@ -10128,7 +8191,7 @@ Since the generation of cell-type specific knockout models, the importance of in
     sc:url "https://mpi-ie.shinyapps.io/braininteractomeexplorer/" .
 
 <https://bio.tools/Branch> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3334,
         edam:topic_3399,
@@ -10148,28 +8211,8 @@ Since the generation of cell-type specific knockout models, the importance of in
     biotools:primaryContact "Andrew I. Su",
         "Benjamin M. Good" .
 
-<https://bio.tools/Bridge_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0128,
-        edam:topic_0153,
-        edam:topic_0736,
-        edam:topic_0820 ;
-    sc:citation <https://doi.org/10.1021/ACS.JCTC.9B00697>,
-        "pubmed:31652399" ;
-    sc:description """A Graph-Based Algorithm to Analyze Dynamic H-Bond Networks in Membrane Proteins.
-
-Membrane proteins that function as transporters or receptors must communicate with both sides of the lipid bilayer in which they sit. This long distance communication enables transporters to move protons or other ions and small molecules across the bilayer and receptors to transmit an external signal to the cell. Hydrogen bonds, hydrogen-bond networks, and lipid-protein interactions are essential for the motions and functioning of the membrane protein and, consequently, of outmost interest to structural biology and numerical simulations. We present here Bridge, an algorithm tailored for efficient analyses of hydrogen-bond networks in membrane transporter and receptor proteins.
-
-||| HOMEPAGE MISSING!.
-
-||| NAME (Bridge) SIMILAR TO (PUB. DIFFERENT) bio.tools/bridge (bridge)""" ;
-    sc:featureList edam:operation_0394,
-        edam:operation_2476,
-        edam:operation_3891 ;
-    sc:name "Bridge_autogenerated" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31652399" .
-
 <https://bio.tools/Broccoli> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0769,
         edam:topic_3293,
@@ -10188,18 +8231,8 @@ Broccoli, a user-friendly pipeline designed to infer with high precision ortholo
     sc:name "Broccoli" ;
     sc:url "https://github.com/rderelle/Broccoli" .
 
-<https://bio.tools/C-HMOSHSSA> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_2640,
-        edam:topic_3474,
-        edam:topic_3518 ;
-    sc:citation <https://doi.org/10.1016/J.CMPB.2019.06.029>,
-        "pubmed:31416551" ;
-    sc:description "> MEDIUM CONFIDENCE! | > HOMEPAGE MISSING! | > CORRECT NAME OF TOOL COULD ALSO BE 'SSA' (bio.tools/ssa), 'MOSHO', 'salp', 'SSA MOSHO' | Gene selection for cancer classification using multi-objective meta-heuristic and machine learning methods | BACKGROUND AND OBJECTIVE:Over the last two decades, DNA microarray technology has emerged as a powerful tool for early cancer detection and prevention. It helps to provide a detailed overview of disease complex microenvironment. Moreover, online availability of thousands of gene expression assays made microarray data classification an active research area. A common goal is to find a minimum subset of genes and maximizing the classification accuracy. METHODS:In pursuit of a similar objective, we have proposed framework (C-HMOSHSSA) for gene selection using multi-objective spotted hyena optimizer (MOSHO) and salp swarm algorithm (SSA)" ;
-    sc:name "C-HMOSHSSA" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31416551" .
-
 <https://bio.tools/C-I-TASSER> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0736,
         edam:topic_0749 ;
@@ -10214,7 +8247,7 @@ Broccoli, a user-friendly pipeline designed to infer with high precision ortholo
     sc:url "https://zhanglab.ccmb.med.umich.edu/C-I-TASSER/" .
 
 <https://bio.tools/C-InterSecture> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3292 ;
@@ -10232,7 +8265,7 @@ Broccoli, a user-friendly pipeline designed to infer with high precision ortholo
     biotools:primaryContact "M. Nuriddinov" .
 
 <https://bio.tools/C-JAMP> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3170,
         edam:topic_3517 ;
@@ -10251,7 +8284,7 @@ We provide a computationally efficient and robust implementation of the recently
     sc:url "https://cran.r-project.org/web/packages/CJAMP/index.html" .
 
 <https://bio.tools/C3> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_2640,
         edam:topic_3168 ;
@@ -10263,7 +8296,7 @@ We provide a computationally efficient and robust implementation of the recently
     sc:url "http://drivergene.rwebox.com/c3/index.html" .
 
 <https://bio.tools/C3D> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3168,
@@ -10280,18 +8313,8 @@ We provide a computationally efficient and robust implementation of the recently
     sc:url "https://github.com/LupienLab/C3D" ;
     biotools:primaryContact "Tahmid Mehdi" .
 
-<https://bio.tools/CABE> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0749 ;
-    sc:citation <https://doi.org/10.3390/S19183906>,
-        "pmcid:PMC6767114",
-        "pubmed:31510098" ;
-    sc:description "> CORRECT NAME OF TOOL COULD ALSO BE 'Cloud-based Acoustic Beamforming', 'Cloud-based Acoustic Beamforming Emulator' | A Cloud-Based Acoustic Beamforming Emulator for FPGA-Based Sound Source Localization | Microphone array online emulator | Welcome to the Microphone Array Emulator platform of the RAPPTORlab at the Vrije Universiteit Brussel. From this website one can emulate the behaviour of a microphone array along with the required Signal Processing Chain. It is also possible to compute captured samples from measurements with microphones. After computation, the results can be visualized in both 2D and 3D. Launching emulations and visualizing results can be done by using the tools provided at the download section | A few steps are required before one can launch emulations and visualize results: | Create an account on our platform. We kindly ask to provide the full name, e-mail address and institution of affiliation | Each account needs to be approved by the administrator of the tool" ;
-    sc:featureList edam:operation_0337 ;
-    sc:name "CABE" ;
-    sc:url "https://projects.rapptor.vub.ac.be/CABE/" .
-
 <https://bio.tools/CABS-dock> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -10313,7 +8336,7 @@ We provide a computationally efficient and robust implementation of the recently
     sc:url "http://biocomp.chem.uw.edu.pl/CABSdock" .
 
 <https://bio.tools/CADOES> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3067,
         edam:topic_3474 ;
     sc:citation <https://doi.org/10.1016/J.FORSCIINT.2019.109873>,
@@ -10322,28 +8345,8 @@ We provide a computationally efficient and robust implementation of the recently
     sc:name "CADOES" ;
     sc:url "http://osteomics.com/CADOES/" .
 
-<https://bio.tools/CAGI> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0621,
-        edam:topic_0749,
-        edam:topic_3168,
-        edam:topic_3173,
-        edam:topic_3474 ;
-    sc:citation <https://doi.org/10.3389/FGENE.2019.01078>,
-        "pmcid:PMC6834773",
-        "pubmed:31737053" ;
-    sc:description """The Local Context of Cis-Regulatory Modules Complicates Prediction of Regulatory Variants.
-
-Many problems of modern genetics and functional genomics require the assessment of functional effects of sequence variants, including gene expression changes. Machine learning is considered to be a promising approach for solving this task, but its practical applications remain a challenge due to the insufficient volume and diversity of training data. A promising source of valuable data is a saturation mutagenesis massively parallel reporter assay, which quantitatively measures changes in transcription activity caused by sequence variants. Here, we explore the computational predictions of the effects of individual single-nucleotide variants on gene transcription measured in the massively parallel reporter assays, based on the data from the recent "Regulation Saturation" Critical Assessment of Genome Interpretation challenge.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'expression-variants'""" ;
-    sc:featureList edam:operation_0331,
-        edam:operation_0438,
-        edam:operation_3799 ;
-    sc:name "CAGI" ;
-    sc:url "https://bitbucket.org/autosomeru_cagi2018/cagi2018_regsat" .
-
 <https://bio.tools/CALIMA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3382 ;
     sc:citation <https://doi.org/10.1016/J.CMPB.2019.104991>,
@@ -10356,7 +8359,7 @@ Many problems of modern genetics and functional genomics require the assessment
     sc:url "https://aethelraed.nl/calima" .
 
 <https://bio.tools/CAM> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0194,
@@ -10376,18 +8379,8 @@ Many problems of modern genetics and functional genomics require the assessment
     sc:url "https://github.com/ridgelab/cam" ;
     biotools:primaryContact "Justin Miller" .
 
-<https://bio.tools/CAM2FIB> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0102,
-        edam:topic_0611 ;
-    sc:citation <https://doi.org/10.1088/1361-6528/AB329D>,
-        "pubmed:31393838" ;
-    sc:description "> MEDIUM CONFIDENCE! | > CORRECT NAME OF TOOL COULD ALSO BE 'G-code', 'machining', 'beam', 'FIB machining' | Computer-aided manufacturing and focused ion beam technology enable machining of complex micro- and nano-structures | Interpretation and interpolation of G-code for creating stream files for FIB/SEM instruments | Program for interpretation and interpolation of G-code to create stream files for FIB/SEM instruments | The currently implemented output format is designed for use with an FEI Helios NanoLab G3 instrument, but may easily be adapted to other instruments. This code accepts most G-code files as an input and was tested with the G-code dialects RS274D, WinCNC and FreeCAD. In its current implementation the overall patterning time is equally distributed over all patterning points. Machining or printing of 3D-structures is therefore currently limited to layered structures. Please read the manual for further instructions on installing and running the interpreter program" ;
-    sc:license "MIT" ;
-    sc:name "CAM2FIB" ;
-    sc:url "https://github.com/frankNiessen/CAM2FIB" .
-
 <https://bio.tools/CAMI> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0196,
         edam:topic_0610,
@@ -10409,7 +8402,7 @@ For full Installation instructions and initial uses, refer to vignette ‘CAMI_I
     sc:url "https://github.com/ruffleymr/CAMI" .
 
 <https://bio.tools/CAMISIM> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3174,
         edam:topic_3697,
@@ -10430,7 +8423,7 @@ For full Installation instructions and initial uses, refer to vignette ‘CAMI_I
     sc:url "https://github.com/CAMI-challenge/CAMISIM" .
 
 <https://bio.tools/CAMND> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3172,
         edam:topic_3407 ;
@@ -10444,31 +8437,8 @@ Metabolic networks can model the behavior of metabolism in the cell. Since analy
     sc:name "CAMND" ;
     sc:url "http://eslahchilab.ir/softwares/dmn" .
 
-<https://bio.tools/CANCER-ID> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0199,
-        edam:topic_0654,
-        edam:topic_0769,
-        edam:topic_3168,
-        edam:topic_3303 ;
-    sc:citation <https://doi.org/10.1373/CLINCHEM.2019.306837>,
-        "pubmed:31628139" ;
-    sc:description """Multicenter Evaluation of Circulating Cell-Free DNA Extraction and Downstream Analyses for the Development of Standardized (Pre)analytical Work Flows.
-
-CANCER-ID – Innovation in Medicine.
-
-Cancer Treatment and monitoring through identification of cCTCs and tumor related nucleic acids in blood.
-
-In this section you can find out more about the scientific objectives and the workplan of CANCER-ID.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'mnDNA', 'ccfDNA preanalytical', 'ccfDNA' (bio.tools/ccfDNA), 'ctDNA'""" ;
-    sc:featureList edam:operation_3202,
-        edam:operation_3435,
-        edam:operation_3799 ;
-    sc:name "CANCER-ID" ;
-    sc:url "http://www.cancer-id.eu" .
-
 <https://bio.tools/CANDI> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3384,
@@ -10490,7 +8460,7 @@ In this section you can find out more about the scientific objectives and the wo
     biotools:primaryContact "M. A. Badgeley" .
 
 <https://bio.tools/CANDO> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0202,
@@ -10508,26 +8478,8 @@ In this section you can find out more about the scientific objectives and the wo
     sc:name "Computational Analysis of Novel Drug Opportunities (CANDO)" ;
     sc:url "https://github.com/ram-compbio/CANDO" .
 
-<https://bio.tools/CANPA> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0154,
-        edam:topic_0769,
-        edam:topic_3172,
-        edam:topic_3343,
-        edam:topic_3407 ;
-    sc:citation <https://doi.org/10.26434/CHEMRXIV.8015039.V2> ;
-    sc:description """Computer-Assisted Natural Products Anticipation.
-
-<p>Traditional natural products discovery workflows implying a combination of different targeting strategies including structure- and or bioactivity-based approaches, afford no information about new compound structure until late in the discovery pipeline. By integrating a MS MS prediction module and a collaborative library of (bio)chemical transformations, we have developed a new platform, coined MetWork, that is able of anticipating the structural identity of metabolites starting from any identified compound.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'MetWork' (bio.tools/MetWork), 'networking-based', 'alkaloids'""" ;
-    sc:featureList edam:operation_3803 ;
-    sc:name "CANPA" ;
-    sc:url "https://doi.org/10.26434/CHEMRXIV.8015039.V2" .
-
 <https://bio.tools/CANet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3063 ;
     sc:citation <https://doi.org/10.1109/TMI.2019.2951844>,
@@ -10539,20 +8491,8 @@ Diabetic retinopathy (DR) and diabetic macular edema (DME) are the leading cause
     sc:name "CANet" ;
     sc:url "https://github.com/xmengli999/CANet" .
 
-<https://bio.tools/CAP-I> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0203,
-        edam:topic_0780,
-        edam:topic_3170 ;
-    sc:citation <https://doi.org/10.1101/775973> ;
-    sc:description "> LOW CONFIDENCE! | > CORRECT NAME OF TOOL COULD ALSO BE 'RNA-CAP-I-seq' | High-resolution Expression Profiling of Selected Gene Sets during Plant Immune Activation | 1_CAP_I_time_series_visualisation | Each folder contains raw datasets, scripts, outputs" ;
-    sc:featureList edam:operation_2495,
-        edam:operation_3223,
-        edam:operation_3800 ;
-    sc:name "CAP-I" ;
-    sc:url "https://github.com/slt666666/Ding_etal_2019_CAP_I" .
-
 <https://bio.tools/CAPICE> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3320,
         edam:topic_3384,
@@ -10570,7 +8510,7 @@ Diabetic retinopathy (DR) and diabetic macular edema (DME) are the leading cause
     sc:url "https://molgenis43.gcc.rug.nl/" .
 
 <https://bio.tools/CARD> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_2885,
@@ -10589,26 +8529,8 @@ Diabetic retinopathy (DR) and diabetic macular edema (DME) are the leading cause
     sc:softwareHelp <http://arpcard.mcmaster.ca/about> ;
     sc:url "https://card.mcmaster.ca" .
 
-<https://bio.tools/CARMEN_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0203,
-        edam:topic_0625,
-        edam:topic_2885,
-        edam:topic_3173,
-        edam:topic_3517 ;
-    sc:citation <https://doi.org/10.1101/819409> ;
-    sc:description """Computational Assessment of the Regulation-Modulating Potential for Noncoding Variants.
-
-Large-scale genome-wide association and expression quantitative trait loci studies have identified multiple noncoding variants associated with genetic diseases via affecting gene expression.
-
-||| NAME EQUAL TO (PUB. DIFFERENT) bio.tools/carmen""" ;
-    sc:featureList edam:operation_0331,
-        edam:operation_3225,
-        edam:operation_3799 ;
-    sc:name "CARMEN_autogenerated" ;
-    sc:url "http://carmen.gao-lab.org" .
-
 <https://bio.tools/CARNIVAL> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0634,
         edam:topic_0749,
@@ -10629,7 +8551,7 @@ CARNIVAL is an R-package providing a framework to perform causal reasoning to in
     sc:url "https://github.com/saezlab/CARNIVAL" .
 
 <https://bio.tools/CASC> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3292,
         edam:topic_3315,
         edam:topic_3452 ;
@@ -10641,112 +8563,8 @@ CARNIVAL is an R-package providing a framework to perform causal reasoning to in
     sc:name "Colored Abstract Simplicial Complex (CASC)" ;
     sc:url "https://github.com/ctlee/casc" .
 
-<https://bio.tools/CASE> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0089,
-        edam:topic_0621,
-        edam:topic_0749 ;
-    sc:citation <https://doi.org/10.1016/J.DIIN.2017.08.002>,
-        "pmcid:PMC6774392",
-        "pubmed:31579279" ;
-    sc:description """Advancing Coordinated Cyber-investigations and Tool Interoperability using a Community Developed Specification Language.
-
-Source files for the CASE website.
-
-API used for instantiating CASE objects (includes ontological verification and type checking).
-
-Cyber-investigation Analysis Standard Expression (CASE).
-
-Read the CASE Wiki tab to learn everything you need to know about the Cyber-investigation Analysis Standard Expression (CASE) ontology. For learning about the Unified Cyber Ontology, CASE's parent, see UCO.
-
-"@vocab": "http://case.example.org/core#",.
-
-DET ER DINE PENGER DET DREIER SEG OM...
-
-Vi er ikke st�rst, men garanterer effektiv behandling.
-
-Last ned v�r brosjyre i PDF format.
-
-||| COMMON LINK WITH (PUB. & NAME DIFFERENT) bio.tools/pymzml (GITHUB.COM).
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'UCO', 'cyber-investigation', 'cyber-investigations', 'plaso'""" ;
-    sc:featureList edam:operation_3435,
-        edam:operation_3436,
-        edam:operation_3559 ;
-    sc:name "CASE" ;
-    sc:softwareHelp <https://github.com/casework/case/blob/master/examples/accounts.json>,
-        <https://github.com/casework/case/blob/master/examples/file.json> ;
-    sc:url "http://CASE.as" .
-
-<https://bio.tools/CASP13> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0082,
-        edam:topic_0154,
-        edam:topic_0593,
-        edam:topic_2814 ;
-    sc:citation <https://doi.org/10.1002/PROT.25837>,
-        "pubmed:31603581" ;
-    sc:description """Protein structure prediction assisted with sparse NMR data in CASP13.
-
-13th Community Wide Experiment on the.
-
-Critical Assessment of Techniques for Protein Structure Prediction.
-
-CASP13 provides an independent mechanism for the assessment of methods of protein structure modeling.
-
-||| NAME (CASP13) SIMILAR TO (PUB. DIFFERENT) bio.tools/casp (CASP).
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'NMR-assisted'""" ;
-    sc:featureList edam:operation_0303,
-        edam:operation_0320,
-        edam:operation_0321,
-        edam:operation_0474,
-        edam:operation_3215 ;
-    sc:name "CASP13" ;
-    sc:url "http://www.predictioncenter.org/casp13/index.cgi" .
-
-<https://bio.tools/CASP13-CAPRI> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0121,
-        edam:topic_0128,
-        edam:topic_0196,
-        edam:topic_0593,
-        edam:topic_2275 ;
-    sc:citation <https://doi.org/10.1002/PROT.25838>,
-        "pubmed:31612567" ;
-    sc:description """Blind prediction of homo- and hetero-protein complexes.
-
-PDBe, Protein Data Bank in Europe.
-
-Your browser does not support inline frames or is currently configured not to display inline frames. Content can be viewed at actual source page: https://www.ebi.ac.uk/inc/head.html.
-
-CAPRI: Critical Assessment of PRediction of Interactions.
-
-CAPRI communitywide experiment on the comparative evaluation of protein-protein docking for structure prediction.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'CASP-CAPRI', 'CAPRI', 'Blind prediction homo- hetero-protein complexes'""" ;
-    sc:featureList edam:operation_0474,
-        edam:operation_2492,
-        edam:operation_3899 ;
-    sc:name "CASP13-CAPRI" ;
-    sc:url "http://pdbe.org/capri/" .
-
-<https://bio.tools/CASPR_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0203,
-        edam:topic_0625,
-        edam:topic_0659,
-        edam:topic_3170,
-        edam:topic_3512 ;
-    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTZ811>,
-        "pubmed:31681950" ;
-    sc:description """analysis pipeline for single and paired guide RNA CRISPR screens, reveals optimal target selection for long noncoding RNAs.
-
-Welcome to CASPR. Available resources:.
-
-||| NAME (CASPR) SIMILAR TO (PUB. DIFFERENT) bio.tools/caspr (CaspR)""" ;
-    sc:featureList edam:operation_2422 ;
-    sc:name "CASPR_autogenerated" ;
-    sc:url "https://judithbergada.github.io/CASPR/" .
-
 <https://bio.tools/CASet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0199,
         edam:topic_2640 ;
@@ -10764,7 +8582,7 @@ MOTIVATION:There has been recent increased interest in using algorithmic methods
     sc:url "https://bitbucket.org/oesperlab/stereodist/src/master/" .
 
 <https://bio.tools/CAT> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
         edam:topic_0154,
@@ -10786,7 +8604,7 @@ Authors: Frances Sabanes Zariquiey, Joao V. de Souza, Agnieszka K. Bronowska."""
     sc:url "https://github.com/ammvitor/CAT" .
 
 <https://bio.tools/CATANA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3320,
@@ -10807,7 +8625,7 @@ Authors: Frances Sabanes Zariquiey, Joao V. de Souza, Agnieszka K. Bronowska."""
     sc:url "https://github.com/shiauck/CATANA" .
 
 <https://bio.tools/CATHER> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
         edam:topic_0102 ;
@@ -10823,7 +8641,7 @@ CATHER is a threading algorithm for template-based modeling. It uses an iterativ
     sc:url "http://yanglab.nankai.edu.cn/CATHER/" .
 
 <https://bio.tools/CATT> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_2830,
         edam:topic_3170 ;
@@ -10836,7 +8654,7 @@ CATHER is a threading algorithm for template-based modeling. It uses an iterativ
     sc:url "http://bioinfo.life.hust.edu.cn/CATT" .
 
 <https://bio.tools/CAUSALdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0625,
         edam:topic_2885,
@@ -10855,7 +8673,7 @@ CAUSALdb integrates large numbers of GWAS summary statistics and identifies cred
     sc:url "http://mulinlab.org/causaldb" .
 
 <https://bio.tools/CBGT> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0749,
@@ -10875,7 +8693,7 @@ CAUSALdb integrates large numbers of GWAS summary statistics and identifies cred
         <https://orcid.org/0000-0003-4720-0336> .
 
 <https://bio.tools/CBNA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0203,
@@ -10892,27 +8710,8 @@ CAUSALdb integrates large numbers of GWAS summary statistics and identifies cred
     sc:name "CBNA" ;
     sc:url "https://github.com/pvvhoang/CancerDriver" .
 
-<https://bio.tools/CBT> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3376,
-        edam:topic_3403,
-        edam:topic_3409,
-        edam:topic_3421 ;
-    sc:citation <https://doi.org/10.1136/BMJ.L4962>,
-        "pubmed:31685480" ;
-    sc:description """Telephone or internet delivered talking therapy can alleviate irritable bowel symptoms.
-
-Irritable bowel syndrome helped by telephone or internet CBT.
-
-People with irritable bowel syndrome may find cognitive behavioural therapy (a talking therapy) delivered via telephone or internet improves their symptoms.
-
-NIHR Signal Telephone or internet delivered talking therapy can alleviate irritable bowel symptoms.
-
-People with irritable bowel syndrome may find cognitive behavioural therapy (a talking therapy) delivered via telephone or internet improves their symptoms. Compared with usual care alone, both interventions were shown to be more effective, with telephone delivery resulting in greater symptom reduction and web-based therapy being more cost-effective""" ;
-    sc:name "CBT" ;
-    sc:url "https://discover.dc.nihr.ac.uk/content/signal-000784/irritable-bowel-syndrome-helped-by-telephone-or-internet-cbt" .
-
 <https://bio.tools/CCBGpipe> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0654,
         edam:topic_3673 ;
@@ -10928,7 +8727,7 @@ People with irritable bowel syndrome may find cognitive behavioural therapy (a t
     sc:url "https://github.com/jade-nhri/CCBGpipe" .
 
 <https://bio.tools/CCC-Tool> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0632,
         edam:topic_3315,
@@ -10943,7 +8742,7 @@ People with irritable bowel syndrome may find cognitive behavioural therapy (a t
     sc:url "https://ccctool.com" .
 
 <https://bio.tools/CCLA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0203,
         edam:topic_2640,
@@ -10962,7 +8761,7 @@ Abstract Cancer cell lines (CCLs) as important model systems play critical roles
     sc:url "http://bioinfo.life.hust.edu.cn/web/CCLA/" .
 
 <https://bio.tools/CCMP> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3360,
         edam:topic_3697 ;
     sc:citation <https://doi.org/10.1016/J.YJBINX.2019.100040>,
@@ -10973,7 +8772,7 @@ Abstract Cancer cell lines (CCLs) as important model systems play critical roles
     sc:url "https://ccmp.usc.edu" .
 
 <https://bio.tools/CCMetagen> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application",
         "Web service" ;
@@ -10994,27 +8793,8 @@ Abstract Cancer cell lines (CCLs) as important model systems play critical roles
     sc:url "https://cge.cbs.dtu.dk/services/ccmetagen/" ;
     biotools:primaryContact "Vanessa R. Marcelino" .
 
-<https://bio.tools/CCMod> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3318,
-        edam:topic_3384,
-        edam:topic_3452 ;
-    sc:citation <https://doi.org/10.1088/1361-6560/AB6529>,
-        "pubmed:31869822" ;
-    sc:description """A GATE module for Compton Camera imaging simulation.
-
-Compton cameras are gamma-ray imaging systems which have been proposed for a wide variety of applications such as medical imaging, nuclear decommissioning or homeland security. In the design and optimization of such a system Monte Carlo simulations play an essential role. In this work, we propose a generic module to perform Monte Carlo simulations and analyses of Compton Camera imaging which is included in the open-source GATE Geant4 platform. Several digitization stages have been implemented within the module to mimic the performance of the most commonly employed detectors (e.g. monolithic blocks, pixelated scintillator crystals, strip detectors...).
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'Compton', 'Compton Camera', 'scintillator'""" ;
-    sc:featureList edam:operation_3435,
-        edam:operation_3891 ;
-    sc:name "CCMod" ;
-    sc:softwareHelp <https://opengate.readthedocs.io/en/latest/compton_camera_imaging_simulations.html> ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31869822" .
-
 <https://bio.tools/CCSeq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0621,
         edam:topic_0749,
@@ -11030,40 +8810,8 @@ Abstract 0.1 Motivation Potential transcription factor (TF) complexes may be ide
     sc:name "CCSeq" ;
     sc:url "https://cran.r-project.org/web/packages/colocalized/index.html" .
 
-<https://bio.tools/CCTS> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0108,
-        edam:topic_0749,
-        edam:topic_3303,
-        edam:topic_3304,
-        edam:topic_3379 ;
-    sc:citation <https://doi.org/10.1017/CTS.2019.306>,
-        "pmcid:PMC6798507" ;
-    sc:description """3222 University of Mississippi Center for Clinical and Translational Science (CCTS).
-
-OBJECTIVES SPECIFIC AIMS: To introduce CCTS to the clinical and translational research community. METHODS STUDY POPULATION: Established in the summer of 2017, the Center for Clinical and Translational Science (CCTS) fosters cooperative clinical and translational sciences between the University of Mississippi School of Pharmacy (UMSOP) and the University of Mississippi Medical Center (UMMC). CCTS facilitates the translation of basic research discoveries into clinically validated therapies to improve the health of populations in Mississippi and beyond. Priority areas of investigation in CCTS include Cardiometabolic disorders, Cancer, Neuroscience, Infectious diseases, Precision Medicine, and Community-Based Research.
-
-||| HOMEPAGE MISSING!""" ;
-    sc:featureList edam:operation_3435,
-        edam:operation_3454 ;
-    sc:name "CCTS" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6798507/" .
-
-<https://bio.tools/CCi-MOBILE> a sc:SoftwareApplication ;
-    sc:citation <https://doi.org/10.1109/BHI.2019.8834652>,
-        "pmcid:PMC6874365",
-        "pubmed:31763625" ;
-    sc:description """Design and Evaluation of a Cochlear Implant and Hearing Aid Research Platform for Speech Scientists and Engineers.
-
-Hearing loss is an increasingly prevalent condition resulting from damage to the inner ear which causes a reduction in speech intelligibility. The societal need for assistive hearing devices has increased exponentially over the past two decades; however, actual human performance with such devices has only seen modest gains relative to advancements in digital signal processing (DSP) technology. A major challenge with clinical hearing technologies is the limited ability to run complex signal processing algorithms requiring high computation power.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'UT-Dallas', 'speech', 'hearing', 'software-mediated'""" ;
-    sc:name "CCi-MOBILE" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31763625" .
-
 <https://bio.tools/CDAP> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0637 ;
     sc:citation <https://doi.org/10.1038/S41598-019-49225-7>,
@@ -11076,7 +8824,7 @@ Hearing loss is an increasingly prevalent condition resulting from damage to the
     sc:url "http://www.eslahchilab.ir/softwares/cdap" .
 
 <https://bio.tools/CDE> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3334,
         edam:topic_3379,
@@ -11096,7 +8844,7 @@ Hearing loss is an increasingly prevalent condition resulting from damage to the
     sc:url "https://cde.nlm.nih.gov/home" .
 
 <https://bio.tools/CDEK> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3336,
         edam:topic_3373,
         edam:topic_3379 ;
@@ -11110,21 +8858,8 @@ Hearing loss is an increasingly prevalent condition resulting from damage to the
     sc:softwareHelp <http://cdek.wustl.edu/about/> ;
     sc:url "http://cdek.wustl.edu" .
 
-<https://bio.tools/CDKN1C> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0749,
-        edam:topic_3170,
-        edam:topic_3411 ;
-    sc:citation <https://doi.org/10.12688/F1000RESEARCH.15016.1>,
-        "pmcid:PMC6713069",
-        "pubmed:31497289" ;
-    sc:description "> LOW CONFIDENCE! | Analysis of CDKN1C in fetal growth restriction and pregnancy loss | Summary of CDKN1C (BWCR, BWS, KIP2, P57) expression in human tissue. Nuclear expression in placenta and a subset of tissues including adrenal gland and glomeruli in kidney | We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again" ;
-    sc:featureList edam:operation_3196,
-        edam:operation_3501 ;
-    sc:name "CDKN1C" ;
-    sc:url "https://www.proteinatlas.org/ENSG00000129757-CDKN1C/tissue" .
-
 <https://bio.tools/CDMetaPOP> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_0621,
         edam:topic_3053 ;
@@ -11144,7 +8879,7 @@ Baseline Requirements. CDMetaPOP requires the Python2.7.x interpreter, NumPy pac
     sc:url "https://github.com/ComputationalEcologyLab/CDMetaPOP/" .
 
 <https://bio.tools/CDRgator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_2640,
@@ -11166,26 +8901,8 @@ Baseline Requirements. CDMetaPOP requires the Python2.7.x interpreter, NumPy pac
     sc:softwareHelp <http://cdrgator.ewha.ac.kr:8080/CDRgator/help.jsp> ;
     sc:url "http://cdrgator.ewha.ac.kr" .
 
-<https://bio.tools/CDSAs> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3263,
-        edam:topic_3303,
-        edam:topic_3360,
-        edam:topic_3379,
-        edam:topic_3393 ;
-    sc:citation <https://doi.org/10.1101/19008433> ;
-    sc:description """A target product profile for electronic clinical decision support algorithms combined with point-of-care diagnostic test results to support evidence-based decisions during patient consultations by health workers.
-
-Health workers in low-resource settings often lack the support and tools to follow evidence-based clinical recommendations for diagnosing, treating and managing sick patients. Digital technologies, by combining patient health information and point of care diagnostics with evidence-based clinical protocols, can help improve the quality of care, the rational use of resources (humans, diagnostics and medicines) and save patient lives.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'CDSA', 'LMICs', 'evidence-based', 'consultations'""" ;
-    sc:featureList edam:operation_2428 ;
-    sc:name "CDSAs" ;
-    sc:url "https://doi.org/10.1101/19008433" .
-
 <https://bio.tools/CDSeq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2229,
         edam:topic_2269,
@@ -11210,7 +8927,7 @@ Added data-dilution option to speed up the algorithm. We provided explaination i
     sc:url "https://github.com/kkang7/CDSeq" .
 
 <https://bio.tools/CEBA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_3050,
@@ -11224,19 +8941,8 @@ Added data-dilution option to speed up the algorithm. We provided explaination i
     sc:name "CEBA geoportail" ;
     sc:url "http://vmcebagn-dev.ird.fr" .
 
-<https://bio.tools/CELLmicrocosmos_tools> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0153,
-        edam:topic_0602,
-        edam:topic_2229 ;
-    sc:citation <https://doi.org/10.1515/JIB-2019-0057>,
-        "pmcid:PMC6798854",
-        "pubmed:31560649" ;
-    sc:description "> COMMON LINK WITH (PUB. & NAME DIFFERENT) bio.tools/CmPIweb (CELLMICROCOSMOS.ORG), bio.tools/cmpi (CELLMICROCOSMOS.ORG) | A Small History of Java-Based Cell and Membrane Modelling Open Source Software Development | The aim of CELLmicrocosmos is the interactive 3D stereoscopic visualization of biological cells for a better understanding of their internal structures and their functioning" ;
-    sc:name "CELLmicrocosmos tools" ;
-    sc:url "https://www.CELLmicrocosmos.org" .
-
 <https://bio.tools/CEMARA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3305,
         edam:topic_3325,
@@ -11252,7 +8958,7 @@ Added data-dilution option to speed up the algorithm. We provided explaination i
     sc:url "https://cemara.org/presentation/show.jsp" .
 
 <https://bio.tools/CEPICS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2640,
         edam:topic_3382 ;
@@ -11270,7 +8976,7 @@ There are two comparison strategies for the NMI and ARI depending on the availab
     sc:url "https://github.com/GaoLabXDU/CEPICS" .
 
 <https://bio.tools/CERENKOV2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2885,
         edam:topic_3474,
@@ -11293,7 +8999,7 @@ There are two comparison strategies for the NMI and ARI depending on the availab
     biotools:primaryContact "Stephen Ramsey" .
 
 <https://bio.tools/CERR> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3384,
         edam:topic_3444 ;
@@ -11307,7 +9013,7 @@ There are two comparison strategies for the NMI and ARI depending on the availab
     sc:url "https://www.github.com/cerr/CERR" .
 
 <https://bio.tools/CEVIChE> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0208,
         edam:topic_0625,
         edam:topic_3308 ;
@@ -11322,7 +9028,7 @@ There are two comparison strategies for the NMI and ARI depending on the availab
     sc:url "https://saezlab.shinyapps.io/ceviche/" .
 
 <https://bio.tools/CEthreader> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0102,
         edam:topic_0130,
@@ -11345,7 +9051,7 @@ CEthreader (Contact Eigenvector-based threader) is a new threading algorithm tha
     sc:url "https://zhanglab.ccmb.med.umich.edu/CEthreader" .
 
 <https://bio.tools/CF-targeter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0602,
         edam:topic_3407 ;
@@ -11358,7 +9064,7 @@ CEthreader (Contact Eigenvector-based threader) is a new threading algorithm tha
     sc:url "http://www.rxnfinder.org/cf_targeter/" .
 
 <https://bio.tools/CFD> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0203,
@@ -11378,7 +9084,7 @@ CFD itself is implemented in Go (source code is in the go/src/ directory), and f
     sc:url "https://github.com/Kingsford-Group/cfd" .
 
 <https://bio.tools/CFEA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3173,
         edam:topic_3176 ;
@@ -11392,40 +9098,8 @@ CFD itself is implemented in Go (source code is in the go/src/ directory), and f
     sc:name "Cell-Free Epigenome Atlas (CFEA)" ;
     sc:url "http://www.bio-data.cn/CFEA" .
 
-<https://bio.tools/CFIR> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3063,
-        edam:topic_3377,
-        edam:topic_3810 ;
-    sc:citation <https://doi.org/10.1016/J.HJDSI.2019.100369>,
-        <https://doi.org/10.5271/SJWEH.3844>,
-        "pubmed:31365746",
-        "pubmed:31445878" ;
-    sc:description "> MEDIUM CONFIDENCE! | > CORRECT NAME OF TOOL COULD ALSO BE 'PCD', 'Incorporating patient-generated contextual data care', 'ROPS', 'NRRP', 'EHR', 'facilitators' | Key factors for successful implementation of the National Rollover Protection Structure Rebate Program | Clinician perspectives using the Consolidated Framework for Implementation Science | The Consolidated Framework for Implementation Research | You have come to the right place if you are looking for more information about the Consolidated Framework for Implementation Research (CFIR) that was originally published in Implementation Science in 2009. This site is created for individuals considering using the CFIR to evaluate an implementation or design an implementation study. Supported Web Browsers: Google Chrome,… | The Consolidated Framework for Implementation Research Technical Assistance for users of the CFIR framework" ;
-    sc:featureList edam:operation_3436 ;
-    sc:name "CFIR" ;
-    sc:url "http://www.cfirguide.org/" .
-
-<https://bio.tools/CFIR_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3324,
-        edam:topic_3335,
-        edam:topic_3379 ;
-    sc:citation <https://doi.org/10.1101/19013920> ;
-    sc:description """Exploring barriers and facilitators to integrated hypertension-HIV management in Ugandan HIV clinics using the Consolidated Framework for Implementation Research (CFIR).
-
-Background: Persons Living with HIV (PLHIV) receiving antiretroviral therapy have increased risk of cardiovascular disease (CVD). Integration of services for hypertension (HTN), the primary CVD risk factor, into HIV clinics is recommended in Uganda. Our prior work demonstrated multiple gaps in implementation of integrated HTN care along the HIV treatment cascade. In this study, we sought to explore barriers to, and facilitators of, integrating HTN screening and treatment into HIV clinics in Eastern Uganda. Methods: We conducted a qualitative study at three HIV clinics with low, intermediate, and high HTN care cascade performance, which we classified based on our prior work.
-
-||| HOMEPAGE MISSING!.
-
-||| NAME EQUAL TO (PUB. DIFFERENT) bio.tools/CFIR.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'HTN', 'HTN HIV'""" ;
-    sc:featureList edam:operation_3283,
-        edam:operation_3760 ;
-    sc:name "CFIR_autogenerated" ;
-    sc:url "https://doi.org/10.1101/19013920" .
-
 <https://bio.tools/CFNet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3382,
         edam:topic_3474 ;
@@ -11438,7 +9112,7 @@ Background: Persons Living with HIV (PLHIV) receiving antiretroviral therapy hav
     sc:url "https://github.com/bchidest/CFNet" .
 
 <https://bio.tools/CFQuant-automatic> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3301,
         edam:topic_3382 ;
@@ -11458,7 +9132,7 @@ Background: Persons Living with HIV (PLHIV) receiving antiretroviral therapy hav
     biotools:primaryContact "Eyal Dafni" .
 
 <https://bio.tools/CGAR> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0208,
         edam:topic_0625,
         edam:topic_2640,
@@ -11477,7 +9151,7 @@ Clinical Genome & Ancestry Report (CGAR) enables users to identify and prioritiz
     sc:url "https://tom.tch.harvard.edu/apps/cgar/" .
 
 <https://bio.tools/CGIDLA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0749 ;
     sc:citation <https://doi.org/10.1109/TCBB.2019.2935971>,
         "pubmed:31443042" ;
@@ -11489,7 +9163,7 @@ Clinical Genome & Ancestry Report (CGAR) enables users to identify and prioritiz
     sc:url "http://www.combio-lezhang.online/cgidla/index.html" .
 
 <https://bio.tools/CGIdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0208,
         edam:topic_2640,
         edam:topic_3360 ;
@@ -11502,7 +9176,7 @@ Clinical Genome & Ancestry Report (CGAR) enables users to identify and prioritiz
     sc:url "http://www.medsysbio.org/CGIdb" .
 
 <https://bio.tools/CGLFold> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0196,
         edam:topic_3542 ;
@@ -11516,7 +9190,7 @@ Clinical Genome & Ancestry Report (CGAR) enables users to identify and prioritiz
     sc:url "https://github.com/iobio-zjut/CGLFold" .
 
 <https://bio.tools/CGR> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3320,
@@ -11536,7 +9210,7 @@ Project description: We propose to use chaos game representation and neural netw
     sc:url "https://github.com/thoang3/portfolio/tree/SpliceSites_ANN_CGR" .
 
 <https://bio.tools/CGRtools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2258,
@@ -11559,48 +9233,19 @@ Project description: We propose to use chaos game representation and neural netw
         "Ramil Nugmanov",
         "Timur Madzhidov" .
 
-<https://bio.tools/CGVD> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0077,
-        edam:topic_0199,
-        edam:topic_3796 ;
-    sc:citation <https://doi.org/10.1093/NAR/GKZ1105>,
-        "pubmed:31733055" ;
-    sc:description """a genomic variation database for Chinese populations.
-
-Nucleic Acids Research, gkz952, doi:10.1093 nar gkz952.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'gkz952'""" ;
-    sc:name "CGVD" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31733055" .
-
-<https://bio.tools/CHAMPS> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3063,
-        edam:topic_3305,
-        edam:topic_3324,
-        edam:topic_3411,
-        edam:topic_3418 ;
-    sc:citation <https://doi.org/10.1093/CID/CIZ572>,
-        "pmcid:PMC6785670",
-        "pubmed:31598661" ;
-    sc:description """Overview and Development of the Child Health and Mortality Prevention Surveillance Determination of Cause of Death (DeCoDe) Process and DeCoDe Diagnosis Standards.
-
-Mortality surveillance and cause of death data are instrumental in improving health, identifying diseases and conditions that cause a high burden of preventable deaths, and allocating resources to prevent these deaths. The Child Health and Mortality Prevention Surveillance (CHAMPS) network uses a standardized process to define, assign, and code causes of stillbirth and child death (<5 years of age) across the CHAMPS network. A Determination of Cause of Death (DeCoDe) panel composed of experts from a local CHAMPS site analyzes all available individual information, including laboratory, histopathology, abstracted clinical records, and verbal autopsy findings for each case and, if applicable, also for the mother.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'DeCoDe'""" ;
-    sc:featureList edam:operation_3435,
-        edam:operation_3503 ;
-    sc:name "CHAMPS" ;
-    sc:url "https://champshealth.org/protocols/" .
-
 <https://bio.tools/CHARMM-GUI> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0152,
         edam:topic_0153 ;
-    sc:citation <https://doi.org/10.1021/acs.jctc.8b01066>,
+    sc:citation <https://doi.org/10.1002/jcc.20945>,
+        <https://doi.org/10.1002/jcc.23702>,
+        <https://doi.org/10.1021/acs.jctc.5b00935>,
+        <https://doi.org/10.1021/acs.jctc.8b01066>,
+        "pubmed:18351591",
+        "pubmed:25130509",
+        "pubmed:26631602",
         "pubmed:30525595" ;
     sc:description "Membrane Builder for Complex Biological Membrane Simulations with Glycolipids and Lipoglycans." ;
     sc:featureList edam:operation_0417,
@@ -11614,7 +9259,7 @@ Mortality surveillance and cause of death data are instrumental in improving hea
     sc:url "http://www.charmm-gui.org" .
 
 <https://bio.tools/CHERIPIC> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
@@ -11639,26 +9284,21 @@ Mortality surveillance and cause of death data are instrumental in improving hea
 
 <https://bio.tools/CHOmine> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2353" ;
-            sc:name "Ontology data" ;
-            sc:sameAs "http://edamontology.org/data_2353" ],
+            sc:additionalType "http://edamontology.org/data_2353" ;
+            sc:name "Ontology data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ] ;
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:name "Sequence features" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3753" ;
-            sc:name "Over-representation data" ;
-            sc:sameAs "http://edamontology.org/data_3753" ],
+            sc:additionalType "http://edamontology.org/data_3786" ;
+            sc:name "Query script" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3786" ;
-            sc:name "Query script" ;
-            sc:sameAs "http://edamontology.org/data_3786" ],
+            sc:additionalType "http://edamontology.org/data_3753" ;
+            sc:name "Over-representation data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:name "Sequence features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application",
         "Web service" ;
@@ -11681,25 +9321,8 @@ Mortality surveillance and cause of death data are instrumental in improving hea
     sc:softwareVersion "1.0.0" ;
     sc:url "https://chomine.boku.ac.at/chomine" .
 
-<https://bio.tools/CHWs_promotores_PCOR_CHW_Champions> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0089,
-        edam:topic_0749,
-        edam:topic_3068,
-        edam:topic_3344 ;
-    sc:citation <https://doi.org/10.1017/CTS.2019.213>,
-        "pmcid:PMC6799287" ;
-    sc:description """National Partnership for Training Community Health Workers in Patient-Centered Outcomes Research (PCOR) in 4 States.
-
-OBJECTIVES SPECIFIC AIMS: To mobilize and engage CHWs promotores as stakeholders, we aim to promote the capacity for CHWs participate in patient centered research (PCOR) by locally implementing a structured research training curriculum for CHWs. Main Questions: How the process of mobilization and engagement would be implemented at local state level. What would be project challenges, risks and barriers at each and across sites. What modifications would be made to the initial PCOR for CHWs training curriculum and toolkit based on local feedback from collaborators, in both English and Spanish. What would be lessons learned on mobilization, engagement of, and sustainability for CHW training organizations as partners in PCOR.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'CHWs promotores PCOR CHW', 'promotores PCOR CHW Champions'""" ;
-    sc:name "CHWs promotores PCOR CHW Champions" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6799287/" .
-
 <https://bio.tools/CHiCP> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0749,
@@ -11719,7 +9342,7 @@ OBJECTIVES SPECIFIC AIMS: To mobilize and engage CHWs promotores as stakeholders
     biotools:primaryContact "O. S. Burren" .
 
 <https://bio.tools/CIBERSORT> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0659,
         edam:topic_2640 ;
@@ -11734,7 +9357,7 @@ OBJECTIVES SPECIFIC AIMS: To mobilize and engage CHWs promotores as stakeholders
     sc:url "https://cibersort.stanford.edu/" .
 
 <https://bio.tools/CIE> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0625,
         edam:topic_0749,
@@ -11758,30 +9381,8 @@ Causal Inference Engine: Directional Enrichment Analysis on Biological Networks.
     sc:name "Causal Inference Enrichment (CIE)" ;
     sc:url "https://umbibio.math.umb.edu/cie/app" .
 
-<https://bio.tools/CIGuide> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3067,
-        edam:topic_3384,
-        edam:topic_3421 ;
-    sc:citation <https://doi.org/10.1007/S11548-019-02066-1>,
-        "pubmed:31506882" ;
-    sc:description "> MEDIUM CONFIDENCE! | > HOMEPAGE MISSING! | > CORRECT NAME OF TOOL COULD ALSO BE 'robotic', 'hybrid', 'Rhinospider', 'end-effector' | in situ augmented reality laser guidance | PURPOSE : A robotic intraoperative laser guidance system with hybrid optic-magnetic tracking for skull base surgery is presented. It provides in situ augmented reality guidance for microscopic interventions at the lateral skull base with minimal mental and workload overhead on surgeons working without a monitor and dedicated pointing tools. METHODS : Three components were developed: a registration tool (Rhinospider), a hybrid magneto-optic-tracked robotic feedback control scheme and a modified robotic end-effector. Rhinospider optimizes registration of patient and preoperative CT data by excluding user errors in fiducial localization with magnetic tracking" ;
-    sc:featureList edam:operation_3552 ;
-    sc:name "CIGuide" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31506882" .
-
-<https://bio.tools/CIMI-Ethiopia> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3390,
-        edam:topic_3399,
-        edam:topic_3810 ;
-    sc:citation <https://doi.org/10.3390/IJERPH16162852>,
-        "pmcid:PMC6719118",
-        "pubmed:31405023" ;
-    sc:description "> MEDIUM CONFIDENCE! | > HOMEPAGE MISSING! | Validation of the CIMI-Ethiopia Program and Seasonal Variation in Maternal Nutrient Intake in Enset (False Banana) Growing Areas of Southern Ethiopia | BACKGROUND:Tools for the rapid and accurate analysis of nutrient intakes from diets of individuals in Southern Ethiopia are lacking. The Calculator of Inadequate Micronutrient Intake program for Ethiopia (CIMI-Ethiopia) has been developed to overcome this problem. CIMI-Ethiopia also computes protein and energy intakes from the diet. The objectives of the current study were to validate CIMI-Ethiopia for the dietary pattern of Southern Ethiopia, and assess the nutrient intakes in postharvest dry and lean wet seasons. METHODS:24-h dietary recall (24HR) data was collected from 578 women of a reproductive age in postharvest dry and lean wet seasons in 2017. For analysis, 24HR data was entered into NutriSurvey (NS), which was the reference nutrition software, and then into CIMI-Ethiopia" ;
-    sc:name "CIMI-Ethiopia" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31405023" .
-
 <https://bio.tools/CINNA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0602 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/bty819>,
@@ -11802,7 +9403,7 @@ Causal Inference Engine: Directional Enrichment Analysis on Biological Networks.
     biotools:primaryContact "Minoo Ashtiani" .
 
 <https://bio.tools/CIRCexplorer2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3068,
         edam:topic_3320,
@@ -11821,7 +9422,7 @@ Causal Inference Engine: Directional Enrichment Analysis on Biological Networks.
     sc:url "https://circexplorer2.readthedocs.io/en/latest/" .
 
 <https://bio.tools/CIRI-full> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_3320,
@@ -11844,7 +9445,7 @@ Causal Inference Engine: Directional Enrichment Analysis on Biological Networks.
         "Jinyang Zhang" .
 
 <https://bio.tools/CISI> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0593,
         edam:topic_3379 ;
@@ -11863,22 +9464,22 @@ Causal Inference Engine: Directional Enrichment Analysis on Biological Networks.
 
 <https://bio.tools/CITE-seq-Count> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3495" ;
-            sc:name "RNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3495" ],
+            sc:additionalType "http://edamontology.org/data_3495" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "RNA sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1022" ;
-            sc:name "Sequence feature label" ;
-            sc:sameAs "http://edamontology.org/data_1022" ] ;
+            sc:additionalType "http://edamontology.org/data_1022" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Sequence feature label" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ],
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_3750" ;
+            sc:name "Report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2084" ;
-            sc:name "Nucleic acid report" ;
-            sc:sameAs "http://edamontology.org/data_2084" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2084" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "Nucleic acid report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2830,
         edam:topic_3308 ;
@@ -11894,7 +9495,7 @@ Causal Inference Engine: Directional Enrichment Analysis on Biological Networks.
     sc:url "https://hoohm.github.io/CITE-seq-Count/" .
 
 <https://bio.tools/CIViCmine> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0218,
         edam:topic_0219,
@@ -11914,7 +9515,7 @@ Causal Inference Engine: Directional Enrichment Analysis on Biological Networks.
     sc:url "http://bionlp.bcgsc.ca/civicmine/" .
 
 <https://bio.tools/CIViCpy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3379,
@@ -11929,23 +9530,8 @@ Causal Inference Engine: Directional Enrichment Analysis on Biological Networks.
     sc:name "CIViCpy" ;
     sc:url "https://docs.civicpy.org/en/1.1/" .
 
-<https://bio.tools/CKS> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3379,
-        edam:topic_3418,
-        edam:topic_3419 ;
-    sc:citation <https://doi.org/10.1016/J.JSP.2019.07.013>,
-        "pubmed:31759471" ;
-    sc:description """A pilot study to examine the feasibility and acceptability of a coordinated intervention design to address treatment engagement challenges in school mental health services.
-
-Treatment engagement is a significant challenge in school mental health services. Despite a growing evidence base on effective interventions for treatment engagement, attempts to address these challenges rarely leverage the available relevant research. To close this gap, this pilot study examined the feasibility, acceptability, and initial implementation outcomes of a coordinated knowledge system (CKS) designed to support the efforts of school mental health (SMH) professionals to address treatment engagement challenges.
-
-||| HOMEPAGE MISSING!""" ;
-    sc:featureList edam:operation_3799 ;
-    sc:name "CKS" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31759471" .
-
 <https://bio.tools/CLASTR> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API",
         "Web application" ;
     sc:applicationSubCategory edam:topic_2229 ;
@@ -11960,22 +9546,8 @@ Treatment engagement is a significant challenge in school mental health services
     sc:url "https://web.expasy.org/cellosaurus-str-search/" ;
     biotools:primaryContact <https://orcid.org/0000-0001-6548-709X> .
 
-<https://bio.tools/CLASTR_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0625,
-        edam:topic_2229,
-        edam:topic_3340 ;
-    sc:citation <https://doi.org/10.1002/IJC.32639>,
-        "pubmed:31444973" ;
-    sc:description "> NAME EQUAL TO (PUB. DIFFERENT) bio.tools/CLASTR | > CORRECT NAME OF TOOL COULD ALSO BE 'Cellosaurus STR', 'Cellosaurus' (bio.tools/cellosaurus) | A precious help for cell line authentication | Website for the Childhood Cancer Repository Searchable Database of Short-Tandem Repeat Genotyping Data for Cell-Lines | Searchable Database of Short-Tandem Repeat Genotyping Data for Cell-Lines | Search Programs for the STR profile database of the JCRB Cell Bank | Simple comparison among JCRB cells | Welcome to the Childhood Cancer Repository Cell Line and Xenograft STR Database | Pick up one human cell from the database and compare with all other human cells in the database | This database contains the STR profiles (8 STR loci + Amelogenin) for cell lines in the Childhood Cancer Repository and also for many cell lines established at Texas Tech University Health Sciences Center and Children's Hospital Los Angeles | Mutual comparison between selected JCRB cells" ;
-    sc:featureList edam:operation_2421,
-        edam:operation_3187,
-        edam:operation_3196 ;
-    sc:license "GPL-3.0" ;
-    sc:name "CLASTR_autogenerated" ;
-    sc:url "https://strdb.cccells.org" .
-
 <https://bio.tools/CLIJ> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3372,
@@ -11993,7 +9565,7 @@ CLIJ is an OpenCL - ImageJ bridge and a Fiji plugin allowing users with entry-le
     sc:url "https://clij.github.io" .
 
 <https://bio.tools/CLINE> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_3168,
@@ -12012,13 +9584,13 @@ CLIJ is an OpenCL - ImageJ bridge and a Fiji plugin allowing users with entry-le
     sc:url "http://mizuguchilab.org/cline/" .
 
 <https://bio.tools/CLIP-Explorer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "Galaxy CLIP-Explorer can process large CLIP-Seq data of eCLIP, iCLIP, and with simple changes to the iCLIP workflows also FLASH, and uvCLAP." ;
     sc:name "CLIP-Explorer" ;
     sc:url "https://clipseq.usegalaxy.eu/" .
 
 <https://bio.tools/CLIPS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2640,
@@ -12042,68 +9614,8 @@ We have developed a database and search application for protocol structure retri
     sc:name "CLIPS" ;
     sc:url "https://corus.kaist.edu/clips" .
 
-<https://bio.tools/CLN3> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0199,
-        edam:topic_0634,
-        edam:topic_3170,
-        edam:topic_3337,
-        edam:topic_3512 ;
-    sc:citation <https://doi.org/10.1002/MGG3.859>,
-        "pmcid:PMC6900386",
-        "pubmed:31568712" ;
-    sc:description """The CLN3 gene and protein.
-
-Error: the hgg_gene parameter is missing from the cart and the CGI params.
-
-NCL RESOURCE - A GATEWAY FOR BATTEN DISEASE.
-
-The Genotype-Tissue Expression (GTEx) project is an ongoing effort to build a comprehensive public resource to study tissue-specific gene expression and regulation. Samples were collected from 53 non-diseased tissue sites across nearly 1000 individuals, primarily for molecular assays including WGS, WES and RNA-seq. Remaining samples are stored in the GTEx Biobank. The GTEx Portal provides open access to data including gene expression, QTLs, and histology images.
-
-CLN3 mutation table in excel format to download.
-
-Pa-cln3.001-80, Pa-cln3.081-139, Pa-cln3.178-190,.
-
-p.[Gly154Alafs*29, Val155_Gly264del].
-
-The International Batten Disease Consortium, 1995 Munroe et al., 1997.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'protein'""" ;
-    sc:featureList edam:operation_0265,
-        edam:operation_0331,
-        edam:operation_2495 ;
-    sc:name "CLN3" ;
-    sc:url "http://genome.ucsc.edu/cgi-bin/hgGene?db=hg19%26hgg_gene=CLN3" .
-
-<https://bio.tools/CLN3_gene> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0199,
-        edam:topic_0204,
-        edam:topic_0634,
-        edam:topic_3170,
-        edam:topic_3337 ;
-    sc:citation <https://doi.org/10.1002/MGG3.859>,
-        "pmcid:PMC6900386",
-        "pubmed:31568712" ;
-    sc:description """The CLN3 gene and protein.
-
-Error: the hgg_gene parameter is missing from the cart and the CGI params.
-
-NCL RESOURCE - A GATEWAY FOR BATTEN DISEASE.
-
-The Genotype-Tissue Expression (GTEx) project is an ongoing effort to build a comprehensive public resource to study tissue-specific gene expression and regulation. Samples were collected from 53 non-diseased tissue sites across nearly 1000 individuals, primarily for molecular assays including WGS, WES and RNA-seq. Remaining samples are stored in the GTEx Biobank. The GTEx Portal provides open access to data including gene expression, QTLs, and histology images.
-
-CLN3 mutation table in excel format to download.
-
-CLN3 patient table in excel format to download.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'CLN3'""" ;
-    sc:featureList edam:operation_0282,
-        edam:operation_2495,
-        edam:operation_3800 ;
-    sc:name "CLN3 gene" ;
-    sc:url "http://genome.ucsc.edu/cgi-bin/hgGene?db=hg19%26hgg_gene=CLN3" .
-
 <https://bio.tools/CLOBNET> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3376,
         edam:topic_3474 ;
     sc:citation <https://doi.org/10.1200/CCI.18.00132>,
@@ -12114,7 +9626,7 @@ CLN3 patient table in excel format to download.
     sc:url "https://github.com/isoviita/CLOBNET" .
 
 <https://bio.tools/CLiP_Chlamydomonas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0153,
@@ -12133,21 +9645,8 @@ CLN3 patient table in excel format to download.
     biotools:primaryContact "Jonikas lab",
         "Matt Laudon" .
 
-<https://bio.tools/CMAC> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3473,
-        edam:topic_3474 ;
-    sc:citation <https://doi.org/10.1109/TNSRE.2019.2959714>,
-        "pubmed:31841418" ;
-    sc:description """Closed-loop multi-amplitude control for robust and dexterous performance of myoelectric prosthesis.
-
-In the case of a hand amputation, the affected person can use a myoelectric prosthesis to substitute the missing limb and regain motor functions. Unfortunately, commercial methods for myoelectric control, although robust and simple, are unintuitive and cognitively taxing when applied to an advanced multifunctional prosthesis. The state-of-the-art methods developed in academia are based on machine learning and therefore require long training and suffer from a lack of robustness. This work presents a novel closed-loop multi-level amplitude controller (CMAC), which aims at overcoming these drawbacks. The CMAC implements three degrees-of-freedom (DoF) control by thresholding the muscle contraction intensity during wrist flexion and extension movements.
-
-||| HOMEPAGE MISSING!""" ;
-    sc:name "CMAC" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31841418" .
-
 <https://bio.tools/CMDO> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Ontology" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_3379,
@@ -12162,37 +9661,8 @@ In the case of a hand amputation, the affected person can use a myoelectric pros
     sc:name "Clinical MetaData Ontology (CMDO)" ;
     sc:url "http://www.snubi.org/software/CMDO/" .
 
-<https://bio.tools/CMSO> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0621,
-        edam:topic_2229,
-        edam:topic_3172,
-        edam:topic_3382,
-        edam:topic_3473 ;
-    sc:citation <https://doi.org/10.1101/803064> ;
-    sc:description """Community Standards for Open Cell Migration Data.
-
-The above publication describes two experiments. Metadata included here refers to the first experiment on Ba/F3 cells. Image data (not included here) consists of 12 144-frame TIFF movies, each relative to a well in a 48-well plate.
-
-Cell Migration Standardisation Organization (CMSO).
-
-The Cell Migration Standardisation Organisation.
-
-The Cell Migration Standardisation Organisation (CMSO) is a young organization that has a specific goal: to facilitate the development of community standards for the field of cell migration.
-
-This document contains the working draft of the Tracks specification being developed by the Cell Migration Standardisation Organisation (CMSO).
-
-An OME-TIFF companion XML file that groups the 12 image data files, including information on the plate layout.
-
-An ISA-tab dataset containing the experimental metadata, compliant with the MIACME minimum information guideline""" ;
-    sc:featureList edam:operation_3431,
-        edam:operation_3435,
-        edam:operation_3446,
-        edam:operation_3799 ;
-    sc:name "CMSO" ;
-    sc:url "http://cmso.science" .
-
 <https://bio.tools/CMVdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0202,
         edam:topic_0804,
@@ -12212,36 +9682,8 @@ Cytomegalovirus Treatment & Management Kauser Akhter, MD Assistant Professor, De
     sc:name "CytoMegaloVirus DataBase (CMVdb)" ;
     sc:url "http://shaktisahislab.com/include/CMV/" .
 
-<https://bio.tools/CMap> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0602,
-        edam:topic_3360,
-        edam:topic_3512 ;
-    sc:citation <https://doi.org/10.1080/21623945.2019.1649578>,
-        "pmcid:PMC6768254",
-        "pubmed:31407623" ;
-    sc:description "> VERY_LOW CONFIDENCE! | > CORRECT NAME OF TOOL COULD ALSO BE 'diabetes', 'IRO', 'DEGs', 'omental' | Identification of biomarkers, pathways and potential therapeutic agents for white adipocyte insulin resistance using bioinformatics analysis | Update September 12, 2017: A new version of the Connectivity Map using the L1000 assay has been accepted for publication, and is currently available as a pre-print (see Subramanian et. al). Tools for analysis of these data are at clue.io | The earlier Affymetrix-microarray based Connectivity Map data (build02) is available in archive mode on this page (see below) | The Connectivity Map (also known as cmap) is a collection of genome-wide transcriptional expression data from cultured human cells treated with bioactive small molecules and simple pattern-matching algorithms that together enable the discovery of functional connections between drugs, genes and diseases through the transitory feature of common gene-expression changes" ;
-    sc:featureList edam:operation_2436,
-        edam:operation_3223 ;
-    sc:name "CMap" ;
-    sc:url "https://portals.broadinstitute.org/cmap" .
-
-<https://bio.tools/CMed> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0769,
-        edam:topic_3384 ;
-    sc:citation <https://doi.org/10.1109/TVCG.2019.2953026>,
-        "pubmed:31751242" ;
-    sc:description """Crowd Analytics for Medical Imaging Data.
-
-We present a visual analytics framework, CMed, for exploring medical image data annotations acquired from crowdsourcing. CMed can be used to visualize, classify, and filter crowdsourced clinical data based on a number of different metrics such as detection rate, logged events, and clustering of the annotations. CMed provides several interactive linked visualization components to analyze the crowd annotation results for a particular video and the associated workers. Additionally, all results of an individual worker can be inspected using multiple linked views in our CMed framework. We allow a crowdsourcing application analyst to observe patterns and gather insights into the crowdsourced medical data, helping him her design future crowdsourcing applications for optimal output from the workers.
-
-||| HOMEPAGE MISSING!""" ;
-    sc:featureList edam:operation_0337,
-        edam:operation_3553 ;
-    sc:name "CMed" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31751242" .
-
 <https://bio.tools/CNAPE> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_2885,
         edam:topic_3170,
@@ -12261,7 +9703,7 @@ Copy number alterations (CNAs) are important features of human cancer. While the
     sc:url "https://github.com/WangLabHKUST/CNAPE" .
 
 <https://bio.tools/CNAtra> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_2640,
@@ -12280,7 +9722,7 @@ Copy number alterations (CNAs) are important features of human cancer. While the
     biotools:primaryContact "Ahmed Khalil" .
 
 <https://bio.tools/CNN> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3318,
         edam:topic_3382,
         edam:topic_3474 ;
@@ -12298,7 +9740,7 @@ Three pretrained CNN neural network models are provided based on all of the brai
     sc:url "https://github.com/Jilab-biomechanics/CNN-brain-strains" .
 
 <https://bio.tools/CNN-SuccSite> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0160,
@@ -12316,7 +9758,7 @@ CNN-SuccSite is a web server for characterization and identification succinylati
     sc:url "http://csb.cse.yzu.edu.tw/CNN-SuccSite/" .
 
 <https://bio.tools/CNN-T4SE> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0202,
@@ -12340,7 +9782,7 @@ The CNN-T4SE is a tool that can be run in windows and linux operating systems. I
     sc:url "https://idrblab.org/cnnt4se/" .
 
 <https://bio.tools/CNV-BAC> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0654,
@@ -12357,7 +9799,7 @@ Abstract Motivation Whole genome sequencing (WGS) is widely used for copy number
     sc:url "https://github.com/LinjieWu/CNV-BAC" .
 
 <https://bio.tools/CNVRanger> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2885,
@@ -12373,7 +9815,7 @@ Abstract Motivation Whole genome sequencing (WGS) is widely used for copy number
     sc:url "http://bioconductor.org/packages/CNVRanger" .
 
 <https://bio.tools/CNVScope> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0602,
@@ -12400,7 +9842,7 @@ CNVScope is a visualization toolkit for seeing copy number data in a relationshi
     sc:url "http://cnvscope.nci.nih.gov/" .
 
 <https://bio.tools/CNet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0602,
@@ -12422,7 +9864,7 @@ CNVScope is a visualization toolkit for seeing copy number data in a relationshi
     biotools:primaryContact "Zhongming Zhao" .
 
 <https://bio.tools/COAC> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0208,
         edam:topic_0602,
@@ -12445,7 +9887,7 @@ CNVScope is a visualization toolkit for seeing copy number data in a relationshi
     biotools:primaryContact "ChengF-Lab" .
 
 <https://bio.tools/COBRA_Toolbox> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2258,
@@ -12466,7 +9908,7 @@ CNVScope is a visualization toolkit for seeing copy number data in a relationshi
     biotools:primaryContact "Ronan Fleming on behalf of the COBRA Toolbox Development Community" .
 
 <https://bio.tools/CODA-ML> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3300,
@@ -12483,33 +9925,8 @@ CNVScope is a visualization toolkit for seeing copy number data in a relationshi
         "Windows" ;
     sc:url "https://github.com/MijinKwon/CODA-ML" .
 
-<https://bio.tools/CODEX2> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0199,
-        edam:topic_2640,
-        edam:topic_3168,
-        edam:topic_3512,
-        edam:topic_3577 ;
-    sc:citation <https://doi.org/10.1101/850958> ;
-    sc:description """Benchmark of tools for CNV detection from NGS panel data in a genetic diagnostics context.
-
-Full-spectrum copy number variation detection by high-throughput DNA sequencing.
-
-High-throughput DNA sequencing enables detection of copy number variations (CNVs) on the genome-wide scale with finer resolution compared to array-based methods, but suffers from biases and artifacts that lead to false discoveries and low sensitivity.
-
-Yuchao Jiang yuchaoj@email.unc.edu.
-
-||| NAME (CODEX2) SIMILAR TO (PUB. DIFFERENT) bio.tools/codex_ngs (CODEX), bio.tools/codex (CODEX).
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'DECoN', 'CNV', 'panelcn', 'Benchmarking-optimization'""" ;
-    sc:featureList edam:operation_0337,
-        edam:operation_3211,
-        edam:operation_3227 ;
-    sc:license "GPL-2.0" ;
-    sc:name "CODEX2" ;
-    sc:url "https://github.com/yuchaojiang/CODEX2" .
-
 <https://bio.tools/COLMARm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0593,
         edam:topic_3172,
@@ -12526,7 +9943,7 @@ Yuchao Jiang yuchaoj@email.unc.edu.
     sc:url "http://spin.ccic.ohio-state.edu/index.php/colmarm/index" .
 
 <https://bio.tools/COMBIgor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_3382,
@@ -12546,19 +9963,8 @@ Yuchao Jiang yuchaoj@email.unc.edu.
         <https://www.combigor.com/tutorials/tutorial> ;
     sc:url "https://www.COMBIgor.com" .
 
-<https://bio.tools/COMET_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0749,
-        edam:topic_3295,
-        edam:topic_3512 ;
-    sc:citation <https://doi.org/10.1101/769794> ;
-    sc:description "> LOW CONFIDENCE! | > HOMEPAGE MISSING! | > NAME (COMET) SIMILAR TO (PUB. DIFFERENT) bio.tools/comet (Comet), bio.tools/comet_visualisation (coMET), bio.tools/comet-universe (CoMet) | A toolkit for composing customizable genetic programs in mammalian cells | ABSTRACT Engineering mammalian cells to carry out sophisticated and customizable genetic programs requires a toolkit of multiple orthogonal and well-characterized transcription factors (TFs). To address this need, we developed the COmposable Mammalian Elements of Transcription (COMET) an ensemble of TFs and promoters that enable the design and tuning of gene expression to an extent not previously possible. COMET currently comprises 44 activating and 12 inhibitory zinc-finger TFs and 83 cognate promoters, combined in a framework that readily accommodates new parts. This system can tune gene expression over three orders of magnitude, provides chemically inducible control of TF activity, and enables single-layer Boolean logic" ;
-    sc:featureList edam:operation_0420,
-        edam:operation_3891 ;
-    sc:name "COMET_autogenerated" ;
-    sc:url "https://doi.org/10.1101/769794" .
-
 <https://bio.tools/COMMAND> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3308,
@@ -12580,7 +9986,7 @@ Yuchao Jiang yuchaoj@email.unc.edu.
     biotools:primaryContact "Marco Moretto" .
 
 <https://bio.tools/COMUNET> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0602,
         edam:topic_2229,
@@ -12600,7 +10006,7 @@ Abstract Intercellular communication plays an essential role in multicellular or
     sc:url "https://github.com/ScialdoneLab/COMUNET" .
 
 <https://bio.tools/CONFINED> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_3295,
@@ -12621,24 +10027,8 @@ Abstract Intercellular communication plays an essential role in multicellular or
     sc:url "https://github.com/cozygene/CONFINED" ;
     biotools:primaryContact "Mike Thompson" .
 
-<https://bio.tools/COP> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0089,
-        edam:topic_3068,
-        edam:topic_3372 ;
-    sc:citation <https://doi.org/10.20944/PREPRINTS201810.0143.V2> ;
-    sc:description """Smart Process Optimization and Adaptive Execution with Semantic Services in Cloud Manufacturing ‡.
-
-A new requirement for the manufacturing companies in Industry 4.0 is to be flexible with respect to changes in demands, requiring them to react rapidly and efficiently on the production capacities. Together with the trend to use Service-Oriented Architectures (SOA), this requirement induces a need for agile collaboration among supply chain partners, but also between different divisions or branches of the same company. In order to address this collaboration challenge, we~propose a novel pragmatic approach for the process analysis, implementation and execution. This~is achieved through sets of semantic annotations of business process models encoded into BPMN 2.0 extensions.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'manufacturing', 'Service-Oriented', 'BPMN', 'service-based'""" ;
-    sc:featureList edam:operation_2409,
-        edam:operation_3761,
-        edam:operation_3762 ;
-    sc:name "COP" ;
-    sc:url "http://jacop.osolpro.com/" .
-
 <https://bio.tools/COPO> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0780,
         edam:topic_3174,
@@ -12653,7 +10043,7 @@ A new requirement for the manufacturing companies in Industry 4.0 is to be flexi
     sc:url "http://copo-project.org" .
 
 <https://bio.tools/CORDERLY> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0602,
@@ -12668,23 +10058,8 @@ A new requirement for the manufacturing companies in Industry 4.0 is to be flexi
     sc:name "CORDERLY" ;
     sc:url "https://github.com/adrena-lab/CORDERLY" .
 
-<https://bio.tools/CORDIC-Astrocyte> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_2229 ;
-    sc:citation <https://doi.org/10.1109/TBCAS.2019.2953631>,
-        "pubmed:31751284" ;
-    sc:description """A Tripartite Glutamate-IP3-Ca2+ Interaction Dynamics on FPGA.
-
-Real-time, large-scale simulation of biological systems is challenging due to different types of nonlinear functions describing biochemical reactions in the cells. The promise of the high speed, cost-effectiveness, and power efficiency in addition to parallel processing has made application-specific hardware an attractive simulation platform. This paper proposes high-speed and low-cost digital hardware to emulate a biological-plausible astrocyte and glutamate-release mechanism. The nonlinear terms of these models were calculated using a high-precision and cost-effective algorithm. Subsequently, the modified models were simulated to study and validate their functions.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'biological-plausible', 'FPGA', 'Glutamate-IP3-Ca2+', 'glutamate-release'""" ;
-    sc:featureList edam:operation_2426 ;
-    sc:name "CORDIC-Astrocyte" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31751284" .
-
 <https://bio.tools/CORE> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0654,
@@ -12704,7 +10079,7 @@ Real-time, large-scale simulation of biological systems is challenging due to di
     biotools:primaryContact "Guoli Sun" .
 
 <https://bio.tools/CORGi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3175,
         edam:topic_3407 ;
@@ -12724,7 +10099,7 @@ Real-time, large-scale simulation of biological systems is challenging due to di
     biotools:primaryContact "J. P. Kocher" .
 
 <https://bio.tools/COSS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -12748,7 +10123,7 @@ Real-time, large-scale simulation of biological systems is challenging due to di
     biotools:primaryContact "Computational Omics and Systems Biology Group" .
 
 <https://bio.tools/COUSIN> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0154,
@@ -12770,7 +10145,7 @@ COUSIN is a bioinformatic tool which aims to calculate the Codon Usage Preferenc
     sc:url "http://cousin.ird.fr" .
 
 <https://bio.tools/COXMEG> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2885,
@@ -12786,23 +10161,8 @@ COUSIN is a bioinformatic tool which aims to calculate the Codon Usage Preferenc
     sc:name "COXMEG" ;
     sc:url "https://CRAN.R-project.org/package=coxmeg" .
 
-<https://bio.tools/CP-North> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3063,
-        edam:topic_3305,
-        edam:topic_3420 ;
-    sc:citation <https://doi.org/10.1136/BMJOPEN-2018-024438>,
-        "pmcid:PMC6797311",
-        "pubmed:31575533" ;
-    sc:description """living life in the Nordic countries? A retrospective register research protocol on individuals with cerebral palsy and their parents living in Sweden, Norway, Denmark, Finland and Iceland.
-
-Living life with cerebral palsy in the Nordic countries.
-
-Sixty-three applicants applied for the doctoral position with CPNorth that recently closed. Health economist, and will be supervisor Associate Professor Johan Jarl was pleased with the turn-out “We are delighted that there were so many qualified applicants who were interested in working with CPNorth” Now, the journey has begun to select the candidate who will become the first official CPNorth PhD student""" ;
-    sc:name "CP-North" ;
-    sc:url "http://rdi.arcada.fi/cpnorth/en/" .
-
 <https://bio.tools/CPGAVAS2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Web service" ;
     sc:applicationSubCategory edam:topic_2885,
@@ -12825,19 +10185,8 @@ Sixty-three applicants applied for the doctoral position with CPNorth that recen
     sc:url "http://www.herbalgenomics.org/cpgavas2" ;
     biotools:primaryContact "Chang Liu" .
 
-<https://bio.tools/CPIC> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0208,
-        edam:topic_0625,
-        edam:topic_3063 ;
-    sc:citation <https://doi.org/10.1002/CPT.1651>,
-        "pubmed:31562822" ;
-    sc:description "The Clinical Pharmacogenetics Implementation Consortium | PGx Dissemination Working Group – CPIC | The Clinical Pharmacogenetics Implementation Consortium (CPIC®) is an international consortium of individual volunteers and a small dedicated staff who are interested in facilitating use of pharmacogenetic tests for patient care | CPIC guidelines are designed to help clinicians understand HOW available genetic test results should be used to optimize drug therapy, rather than WHETHER tests should be ordered | The following is a list of PGx implementers who are using CPIC guidelines as part of a program to facilitate use of genetic tests to guide prescribing for patients in clinical care settings: | A formal working group within CPIC, PharmGKB, PharmVar, and the PGRN was formed in 2018 to focus on the dissemination of resources available for pharmacogenetic implementation such as CPIC guidelines, PharmGKB, PGRN and PharmVar resources, and implementation strategies of pharmacogenetics" ;
-    sc:featureList edam:operation_3196 ;
-    sc:name "CPIC" ;
-    sc:url "http://www.cpicpgx.org" .
-
 <https://bio.tools/CPMCGLM> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3305 ;
@@ -12856,27 +10205,8 @@ Sixty-three applicants applied for the doctoral position with CPNorth that recen
     sc:softwareVersion "1.2" ;
     sc:url "https://cran.r-project.org/package=CPMCGLM" .
 
-<https://bio.tools/CPP> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0202,
-        edam:topic_2640,
-        edam:topic_3068 ;
-    sc:citation <https://doi.org/10.12688/F1000RESEARCH.21463.1> ;
-    sc:description """an online tool for summarizing and searching human cancer-genomic publications.
-
-This file contains scripts for setting up CPP, which is a work in progress.
-
-This is the homepage of the Cancer Publication Portal (CPP) [AACR 2019 Abstract], a tool for searching and summarizing the biomedical literature based on a gene of interest, with filters available for cancer types, mutations, additional genes, and additional cancer-related terms. CPP can answer questions such as.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'Cancer Publication Portal'""" ;
-    sc:featureList edam:operation_0305,
-        edam:operation_2422,
-        edam:operation_3695 ;
-    sc:license "GPL-2.0" ;
-    sc:name "CPP" ;
-    sc:url "https://gdancik.github.io/bioinformatics/CPP/" .
-
 <https://bio.tools/CPPE> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0593,
         edam:topic_3343,
@@ -12893,25 +10223,48 @@ CPPE is an open-source, light-weight C-Plus-Plus library for Polarizable Embeddi
     sc:url "https://github.com/maxscheurer/CPPE" .
 
 <https://bio.tools/CPSR> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence variations" ] ;
+    bsc:output [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Workflow" ;
-    sc:applicationSubCategory edam:topic_0769,
+    sc:applicationSubCategory edam:topic_0622,
+        edam:topic_0769,
         edam:topic_2640,
         edam:topic_3168,
         edam:topic_3360,
-        edam:topic_3517 ;
-    sc:citation <https://doi.org/10.1101/846089> ;
-    sc:description "The Cancer Predisposition Sequencing Reporter (CPSR) is a computational workflow that interprets germline variants identified from next-generation sequencing in the context of cancer predisposition. The workflow is integrated with the framework that underlies the Personal Cancer Genome Reporter (PCGR), utilizing the Docker environment for encapsulation of code and software dependencies. While PCGR is intended for reporting and analysis of somatic variants detected in a tumor, CPSR is intended for reporting and ranking of germline variants in protein-coding genes that are implicated in cancer predisposition and inherited cancer syndromes" ;
-    sc:featureList edam:operation_3225,
+        edam:topic_3577 ;
+    sc:author <https://orcid.org/0000-0001-8468-2050>,
+        <https://orcid.org/0000-0002-7502-7545> ;
+    sc:citation <https://doi.org/10.1002/ijc.33749>,
+        "pubmed:34310709" ;
+    sc:contributor <https://orcid.org/0000-0002-7502-7545> ;
+    sc:description "The Cancer Predisposition Sequencing Reporter (CPSR) is a computational workflow that interprets and classifies germline DNA variants identified from next-generation sequencing in the context of cancer predisposition and inherited cancer syndromes. The workflow can also report incidental findings (ACMG v3.0) as well as the genotypes of common germline variants associated with cancer risk, as reported in the NHGRI-EBI GWAS catalog." ;
+    sc:featureList edam:operation_0331,
+        edam:operation_3225,
         edam:operation_3226,
-        edam:operation_3227 ;
+        edam:operation_3661,
+        edam:operation_3672 ;
+    sc:isAccessibleForFree true ;
     sc:license "MIT" ;
     sc:name "Cancer Predisposition Sequencing Reporter (CPSR)" ;
-    sc:url "https://github.com/sigven/cpsr" .
+    sc:softwareHelp <https://sigven.github.io/cpsr>,
+        <https://sigven.github.io/cpsr/articles/installation.html>,
+        <https://sigven.github.io/cpsr/articles/running.html#all-options>,
+        <https://sigven.github.io/cpsr/authors.html#citation>,
+        <https://sigven.github.io/cpsr/index.html#getting-started> ;
+    sc:softwareVersion "1.0.0" ;
+    sc:url "https://github.com/sigven/cpsr" ;
+    biotools:primaryContact <https://orcid.org/0000-0001-8468-2050> .
 
 <https://bio.tools/CPlantBox> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0780,
         edam:topic_3300,
         edam:topic_3810,
@@ -12931,7 +10284,7 @@ Simulation output of CPlantBox-PiafMunch coupling. Example 2-4""" ;
     sc:url "https://github.com/Plant-Root-Soil-Interactions-Modelling/CPlantBox/" .
 
 <https://bio.tools/CQF-deNoise> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3173 ;
@@ -12943,29 +10296,8 @@ Simulation output of CPlantBox-PiafMunch coupling. Example 2-4""" ;
     sc:name "CQF-deNoise" ;
     sc:url "https://github.com/Christina-hshi/CQF-deNoise" .
 
-<https://bio.tools/CQNR> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0166 ;
-    sc:citation <https://doi.org/10.1016/J.COMPBIOMED.2019.103374>,
-        "pubmed:31419629" ;
-    sc:description "Cluster Quality based Non-Reductional (CQNR) oversampling technique and effector protein predictor based on 3D structure (EPP3D) of proteins | CQNR: Cluster Quality based Non-Reductional over-sampling technique and EPP3D: Effector Protein Predictor based on 3D structure of proteins | Rishika Sen, Somnath Tagore, Rajat K. De | CQNR - The phenomenon of the imbalanced dataset is common in classification. The existence of this problem is visible in many real-life domains, especially for biological datasets. Data imbalance problem can be tackled either by reducing the samples of the majority class or increasing the number of samples in the minority class. In this paper, we have introduced Cluster Quality based Non-Reductional over-sampling technique (CQNR). CQNR generates new samples proportional to the distribution of samples of the minority classes, without eliminating any sample of the minority class as noise" ;
-    sc:name "CQNR" ;
-    sc:url "http://projectphd.droppages.com/CQNR.html" .
-
-<https://bio.tools/CR10> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3489 ;
-    sc:citation <https://doi.org/10.1093/RPD/NCZ207>,
-        "pubmed:31711193" ;
-    sc:description """PUBLIC DATABASE OF COSMIC RADIATION MEASUREMENTS AT AVIATION ALTITUDES OF ABOUT 10 KM.
-
-When using these data, please read this info""" ;
-    sc:featureList edam:operation_0337,
-        edam:operation_3435 ;
-    sc:license "CC-BY-4.0" ;
-    sc:name "CR10" ;
-    sc:url "http://cr10.odz.ujf.cas.cz" .
-
 <https://bio.tools/CRAFT> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Ontology" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0218,
@@ -12982,7 +10314,7 @@ When using these data, please read this info""" ;
     sc:url "https://github.com/UCDenver-ccp/CRAFT" .
 
 <https://bio.tools/CRA_toolbox> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2640 ;
@@ -12999,7 +10331,7 @@ When using these data, please read this info""" ;
     sc:url "http://gitlab.ict4life.com/SysBiOThe/CRA-Matlab" .
 
 <https://bio.tools/CRB-Anim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_3500 ;
     sc:description "CRB-Anim is the online catalog of biological resources of the french national infrastructure supporting research on domestic animals." ;
@@ -13007,7 +10339,7 @@ When using these data, please read this info""" ;
     sc:url "https://www.crb-anim.fr/crb-anim_eng/" .
 
 <https://bio.tools/CRC> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_2259,
         edam:topic_2269,
@@ -13024,7 +10356,7 @@ When using these data, please read this info""" ;
     biotools:primaryContact "Fortunato Bianconi" .
 
 <https://bio.tools/CRCRpred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2640,
@@ -13042,7 +10374,7 @@ When using these data, please read this info""" ;
     biotools:primaryContact "Gajendra P. S. Raghava" .
 
 <https://bio.tools/CRDS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2275,
@@ -13055,7 +10387,7 @@ When using these data, please read this info""" ;
     sc:url "http://pbil.kaist.ac.kr/CRDS" .
 
 <https://bio.tools/CREAM> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0749,
@@ -13071,34 +10403,8 @@ When using these data, please read this info""" ;
     sc:name "CREAM" ;
     sc:url "https://cran.r-project.org/web/packages/CREAM/index.html" .
 
-<https://bio.tools/CREAT> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0203,
-        edam:topic_0621,
-        edam:topic_3305 ;
-    sc:citation <https://doi.org/10.1017/CTS.2019.194>,
-        "pmcid:PMC6799104" ;
-    sc:description """3575 Assessing Research Activity and Capacity of Community Based Organizations.
-
-OBJECTIVES SPECIFIC AIMS: 1. To assess the acceptability and feasibility and of an online self-assessment version of the Community REsearch Activity Assessment Tool (CREAT), an instrument to measure research capacity of CBOs. 2. To elicit CBO perspectives on their research and knowledge generation activities. METHODS STUDY POPULATION: Thirteen CBOs who had previously partnered with an academic course on practice-based community health research were contacted and asked to participate in the field testing of the CREAT and provide feedback on areas of strength and areas for potential improvement. Eleven organizations completed the field testing, which began and ended with an in-person semi-structured interview with the online self-administration of the CREAT in the middle.
-
-||| HOMEPAGE MISSING!""" ;
-    sc:name "CREAT" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6799104/" .
-
-<https://bio.tools/CREGIS-Q> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0102,
-        edam:topic_3489 ;
-    sc:citation <https://doi.org/10.7287/PEERJ.PREPRINTS.2235V2> ;
-    sc:description """a GIS tool to support decision making in case of aquifer contamination emergency.
-
-GIS technology has been used for many years in environmental risk analysis due to its capability to focus on the management and analysis of geographic and alphanumeric data to support spatial decision-making (Vairavamoorthy et al, 2007). Especially in emergency management, a DSS (Decision Support System) constitutes an important task to provide quick responses, though not completely exhaustive, to immediately handle a critical scenario and limit the possible damage. In the framework of a collaboration between the Water Research Institute and the National Civil Protection Department, a customized tool called CREGIS (ContaminazioneRisorseEvento-GIS) has been developed in order to facilitate the emergency management of accidental contamination of aquifers and support decision making (Preziosi et al, 2013).
-
-||| HOMEPAGE MISSING!""" ;
-    sc:name "CREGIS-Q" ;
-    sc:url "https://doi.org/10.7287/PEERJ.PREPRINTS.2235V2" .
-
 <https://bio.tools/CRH> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Suite" ;
     sc:applicationSubCategory edam:topic_0160,
@@ -13117,37 +10423,8 @@ GIS technology has been used for many years in environmental risk analysis due t
     biotools:primaryContact "Ian Sillitoe",
         "Tony E Lewis" .
 
-<https://bio.tools/CRISPR> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0659,
-        edam:topic_0749,
-        edam:topic_0780,
-        edam:topic_3512,
-        edam:topic_3912 ;
-    sc:citation <https://doi.org/10.3390/CELLS8111386>,
-        "pmcid:PMC6912757",
-        "pubmed:31689989" ;
-    sc:description """Exploration of Technological Advancements and Challenges.
-
-Design of target-specific guide RNAs in CRISPR-Cas9, genome-editing systems.
-
-The package includes functions to find potential guide RNAs for input target sequences, optionally filter guide RNAs without restriction enzyme cut site, or without paired guide RNAs, genome-wide search for off-targets, score, rank, fetch flank sequence and indicate whether the target and off-targets are located in exon region or not. Potential guide RNAs are annotated with total score of the top5 and topN off-targets, detailed topN mismatch sites, restriction enzyme cut sites, and paired guide RNAs. This package leverages Biostrings and BSgenome packages.
-
-CRISPR/Cas9 target online predictor.
-
-— Rational design of CRISPR/Cas target.
-
-Enter an accession number (e.g.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'Cas', 'Genome Editing Plants', 'CRISPR Cas', 'review'""" ;
-    sc:featureList edam:operation_0308,
-        edam:operation_0440,
-        edam:operation_3096 ;
-    sc:license "GPL-2.0" ;
-    sc:name "CRISPR" ;
-    sc:url "http://crispr.dbcls.jp/" .
-
 <https://bio.tools/CRISPR-ERA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0621,
@@ -13166,7 +10443,7 @@ Enter an accession number (e.g.
     biotools:primaryContact "Honglei Liu" .
 
 <https://bio.tools/CRISPR-P> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_0780,
@@ -13187,7 +10464,7 @@ Enter an accession number (e.g.
         "Ling-Ling Chen" .
 
 <https://bio.tools/CRISPRCas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:description "Suite of web applications for analysing Clustered Regularly Interspaced Short Palindromic Repeats." ;
@@ -13195,7 +10472,7 @@ Enter an accession number (e.g.
     sc:url "https://crisprcas.i2bc.paris-saclay.fr/" .
 
 <https://bio.tools/CRISPRCasFinder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0160,
@@ -13215,54 +10492,8 @@ Enter an accession number (e.g.
         "David Couvin",
         "Marie Touchon" .
 
-<https://bio.tools/CRISPRCasFinder_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0196,
-        edam:topic_0621,
-        edam:topic_0637,
-        edam:topic_3174 ;
-    sc:citation <https://doi.org/10.1093/NAR/GKZ915>,
-        "pubmed:31624845" ;
-    sc:description """CRISPRCasdb a successor of CRISPRdb containing CRISPR arrays and cas genes from complete genome sequences, and tools to download and query lists of repeats and spacers.
-
-The CRISPRCasFinder program enables the easy detection of CRISPRs and cas genes in user-submitted sequence data.
-
-Welcome to CRISPR-Cas++ ! Please select a tool...
-
-||| NAME EQUAL TO (PUB. DIFFERENT) bio.tools/CRISPRCasFinder.
-
-||| COMMON LINK WITH (PUB. & NAME DIFFERENT) bio.tools/CRISPRCas (CRISPRCAS.I2BC.PARIS-SACLAY.FR), bio.tools/parameciumdb (I2BC.PARIS-SACLAY.FR), bio.tools/CRISPRs_Database (I2BC.PARIS-SACLAY.FR).
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'CRISPRCasdb', 'CRISPR-Cas++', 'CRISPR', 'CRISPRs cas'""" ;
-    sc:featureList edam:operation_0435,
-        edam:operation_0525,
-        edam:operation_2421 ;
-    sc:name "CRISPRCasFinder_autogenerated" ;
-    sc:url "https://crisprcas.i2bc.paris-saclay.fr/" .
-
-<https://bio.tools/CRISPR_Cas9> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0203,
-        edam:topic_0632,
-        edam:topic_2229,
-        edam:topic_3168,
-        edam:topic_3512 ;
-    sc:citation <https://doi.org/10.1007/S12013-019-00898-X>,
-        "pubmed:31875277" ;
-    sc:description """Construction of an Inducible CRISPR/Cas9 System for CXCR4 Gene and Demonstration of its Effects on MKN-45 Cells.
-
-Guide design resources — Zhang Lab.
-
-Biodiscovery and engineering to improve human health.
-
-Thank you to the thousands of users who visited our guide design tool over the past five years. We recently shut down crispr.mit.edu, but there are many other guide design tools available that we hope you will find helpful.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'CRISPR'""" ;
-    sc:featureList edam:operation_3096,
-        edam:operation_3446 ;
-    sc:name "CRISPR Cas9" ;
-    sc:url "http://crispr.mit.edu" .
-
 <https://bio.tools/CRISPR_Explorer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3173,
         edam:topic_3512,
@@ -13277,7 +10508,7 @@ Thank you to the thousands of users who visited our guide design tool over the p
     sc:url "http://crisprexplorer.org" .
 
 <https://bio.tools/CRISPRdirect> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_0749,
@@ -13294,20 +10525,8 @@ Thank you to the thousands of users who visited our guide design tool over the p
     sc:url "http://crispr.dbcls.jp/" ;
     biotools:primaryContact "Yuki Naito" .
 
-<https://bio.tools/CRISPRi> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0749,
-        edam:topic_3297,
-        edam:topic_3512 ;
-    sc:citation <https://doi.org/10.1021/ACSSYNBIO.9B00232>,
-        "pubmed:31491085" ;
-    sc:description "> LOW CONFIDENCE! | > HOMEPAGE MISSING! | A Broad-Host-Range CRISPRi Toolkit for Silencing Gene Expression in Burkholderia | Genetic tools are critical to dissecting the mechanisms governing cellular processes, from fundamental physiology to pathogenesis. Members of the genus Burkholderia have potential for biotechnological applications but can also cause disease in humans with a debilitated immune system. The lack of suitable genetic tools to edit Burkholderia GC-rich genomes has hampered the exploration of useful capacities and the understanding of pathogenic features. To address this, we have developed CRISPR interference (CRISPRi) technology for gene silencing in Burkholderia, testing it in B. cenocepacia, B. multivorans, and B. thailandensis. Tunable expression was provided by placing a codon-optimized dcas9 from Streptococcus pyogenes under control of a rhamnose-inducible promoter" ;
-    sc:featureList edam:operation_0308,
-        edam:operation_3192 ;
-    sc:name "CRISPRi" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31491085" .
-
 <https://bio.tools/CRISPRitz> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_2885,
         edam:topic_3512,
@@ -13327,31 +10546,8 @@ CRISPRitz is a software package containing 5 different tools dedicated to perfor
     sc:name "CRISPRitz" ;
     sc:url "https://github.com/pinellolab/CRISPRitz" .
 
-<https://bio.tools/CRISPRmass> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0196,
-        edam:topic_0632,
-        edam:topic_0798,
-        edam:topic_3168,
-        edam:topic_3512 ;
-    sc:citation <https://doi.org/10.1101/GR.250811.119>,
-        "pubmed:31722958" ;
-    sc:description """CRISPR-based modular assembly of a UAS-cDNA/ORF plasmid library for over 5,500 Drosophila genes conserved in humans.
-
-Guide design resources — Zhang Lab.
-
-Biodiscovery and engineering to improve human health.
-
-Thank you to the thousands of users who visited our guide design tool over the past five years. We recently shut down crispr.mit.edu, but there are many other guide design tools available that we hope you will find helpful.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'CRISPR-based'""" ;
-    sc:featureList edam:operation_0308,
-        edam:operation_0310,
-        edam:operation_3096 ;
-    sc:name "CRISPRmass" ;
-    sc:url "http://crispr.mit.edu" .
-
 <https://bio.tools/CRISPRs_Database> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0157,
         edam:topic_0749,
@@ -13362,19 +10558,8 @@ Thank you to the thousands of users who visited our guide design tool over the p
     sc:url "http://crispr.i2bc.paris-saclay.fr/crispr/" ;
     biotools:primaryContact "Christine Pourcel" .
 
-<https://bio.tools/CRL-1790> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0602,
-        edam:topic_0659,
-        edam:topic_0749 ;
-    sc:citation <https://doi.org/10.1101/747931> ;
-    sc:description "> MEDIUM CONFIDENCE! | > CORRECT NAME OF TOOL COULD ALSO BE 'miR-18b miR-155 miR-142-3p miR-890', 'miR-890', 'miR-18b', 'MAN-10030-03' | Differential gene expression and functional pathway enrichment in colon cell line CCD 841 CoN (CRL-1790) transfected with miR-mimics miR-18b, miR-142-3p, miR-155, and miR-890 | CCD 841 CoN ATCC ® CRL-1790™ Homo sapiens colon normal | CCD 841 CoN ATCC &reg; CRL-1790&trade; Homo sapiens colon normal" ;
-    sc:featureList edam:operation_2436,
-        edam:operation_3792 ;
-    sc:name "CRL-1790" ;
-    sc:url "https://www.atcc.org/Products/All/CRL-1790.aspx#characteristics" .
-
 <https://bio.tools/CRM-SIRT> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3383,
         edam:topic_3452 ;
     sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTZ787>,
@@ -13384,7 +10569,7 @@ Thank you to the thousands of users who visited our guide design tool over the p
     sc:url "https://github.com/icthrm/CRM" .
 
 <https://bio.tools/CROSSalive> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0082,
@@ -13406,22 +10591,8 @@ Thank you to the thousands of users who visited our guide design tool over the p
     sc:url "http://service.tartaglialab.com/new_submission/crossalive" ;
     biotools:primaryContact "Gian Tartaglia" .
 
-<https://bio.tools/CRTL> a sc:SoftwareApplication ;
-    sc:citation <https://doi.org/10.1109/TIP.2019.2948480>,
-        "pubmed:31714223" ;
-    sc:description """Class-specific Reconstruction Transfer Learning for Visual Recognition Across Domains.
-
-This is a matlab code for CRTL in ICCV Workshop 2107. We use the matlab R2015b version.
-
-Class-specific Reconstruction Transfer Learning via Sparse Low-rank Constraint on matlab.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'CRTL three-fold', 'Class-specific Reconstruction Transfer Learning', 'Class-specific'""" ;
-    sc:featureList edam:operation_0337 ;
-    sc:name "CRTL" ;
-    sc:url "https://github.com/wangshanshanCQU/CRTL" .
-
 <https://bio.tools/CRUMBLER> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2885,
@@ -13436,7 +10607,7 @@ Class-specific Reconstruction Transfer Learning via Sparse Low-rank Constraint o
     sc:url "https://github.com/tamarcrum/CRUMBLER" .
 
 <https://bio.tools/CRUP> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0634,
@@ -13456,7 +10627,7 @@ We present the software Condition-specific Regulatory Units Prediction (CRUP) to
     sc:url "https://github.com/VerenaHeinrich/CRUP" .
 
 <https://bio.tools/CRYSPLOT> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3068,
@@ -13477,23 +10648,8 @@ We present the software Condition-specific Regulatory Units Prediction (CRUP) to
         <http://www.crystalsolutions.eu/upload/2017-09-19_11-09-42_CRYSTAL17%20-%20User%20Manual.pdf> ;
     sc:url "http://crysplot.crystalsolutions.eu" .
 
-<https://bio.tools/CRZ> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3382,
-        edam:topic_3489 ;
-    sc:citation <https://doi.org/10.7287/PEERJ.PREPRINTS.2265V2> ;
-    sc:description """Open source geoprocessing tools and meteorological satellite data for crop risk zones monitoring in Sub-Saharan Africa.
-
-In Sub-Saharan Africa analysis tools and models based on meteorological satellites data have been developed within different national and international cooperation initiatives, with the aim of allowing a better monitoring of the cropping season. In most cases, the software was a stand-alone application and the upgrading, in terms of analysis functions, database and hardware maintenance, was difficult for the National Meteorological Services (NMSs) in charge of agro-hydro-meteorological monitoring. The web-based solution proposed in this work intends to improve and ensure the sustainability of applications to support national Early Warning Systems (EWSs) for food security.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'Niger', 'meteorological', 'NMSs', 'RFE'""" ;
-    sc:featureList edam:operation_3454 ;
-    sc:name "CRZ" ;
-    sc:url "https://doi.org/10.7287/PEERJ.PREPRINTS.2265V2" .
-
 <https://bio.tools/CS2BP2-Plot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0097,
@@ -13516,7 +10672,7 @@ In Sub-Saharan Africa analysis tools and models based on meteorological satellit
     biotools:primaryContact <https://orcid.org/0000-0003-1100-646X> .
 
 <https://bio.tools/CS2Structure> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0097,
@@ -13533,82 +10689,8 @@ In Sub-Saharan Africa analysis tools and models based on meteorological satellit
     sc:name "CS2Structure" ;
     sc:url "https://github.com/atfrank/CS2Structure" .
 
-<https://bio.tools/CSAHi> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0202,
-        edam:topic_2229,
-        edam:topic_3377,
-        edam:topic_3382,
-        edam:topic_3500 ;
-    sc:citation <https://doi.org/10.2174/1389201020666191024172425>,
-        <https://doi.org/10.2174/1389201020666191129103730>,
-        "pubmed:31749424",
-        "pubmed:31782362" ;
-    sc:description """Comprehensive Cardiac Safety Assessment using hiPS-cardiomyocytes (Consortium for Safety Assessment using Human iPS cells.
-
-Consortium for Safety Assessment using Human iPS Cells.
-
-Aug. 22, 2018 Latest exhibition information of "Sony Cell Motion Imaging System SI8000".
-
-Aug. 22, 2018 Publications and Members information were updated.
-
-Oct. 11, 2017 Working Members, Advisory and Publication information was updated.
-
-Aug. 16, 2016 Latest exhibition information of "Sony Cell Motion Imaging System SI8000".
-
-Feb. 1, 2016 CSAHi introduce the activity in the Public Symposium of Regulatory.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'CSAHi HEART', 'hiPS-CMs hiPS-CMs', 'immaturity hiPS-CMs hiPS-CMs', 'hiPS-CMs', 'Approach Neurotoxicity using Human iPSC Neurons', 'MEA' (bio.tools/mea), 'neurotoxicity'""" ;
-    sc:name "CSAHi" ;
-    sc:url "http://csahi.org/en/" .
-
-<https://bio.tools/CSA_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0102,
-        edam:topic_0749,
-        edam:topic_2885,
-        edam:topic_3169,
-        edam:topic_3179 ;
-    sc:citation <https://doi.org/10.1186/S12859-019-3090-0>,
-        "pmcid:PMC6929326",
-        "pubmed:31874601" ;
-    sc:description """a web service for the complete process of ChIP-Seq analysis.
-
-BACKGROUND:Chromatin immunoprecipitation sequencing (ChIP-seq) is a technology that combines chromatin immunoprecipitation (ChIP) with next generation of sequencing technology (NGS) to analyze protein interactions with DNA. At present, most ChIP-seq analysis tools adopt the command line, which lacks user-friendly interfaces. Although some web services with graphical interfaces have been developed for ChIP-seq analysis, these sites cannot provide a comprehensive analysis of ChIP-seq from raw data to downstream analysis. RESULTS:In this study, we develop a web service for the whole process of ChIP-Seq Analysis (CSA), which covers mapping, quality control, peak calling, and downstream analysis. In addition, CSA provides a customization function for users to define their own workflows.
-
-||| HOMEPAGE MISSING!.
-
-||| NAME EQUAL TO (PUB. DIFFERENT) bio.tools/csa""" ;
-    sc:featureList edam:operation_0337,
-        edam:operation_2428,
-        edam:operation_3222 ;
-    sc:name "CSA_autogenerated" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31874601" .
-
-<https://bio.tools/CSCD> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0602,
-        edam:topic_0659,
-        edam:topic_2640,
-        edam:topic_3360,
-        edam:topic_3489 ;
-    sc:citation <https://doi.org/10.3389/FONC.2019.01105>,
-        "pmcid:PMC6842961",
-        "pubmed:31750237" ;
-    sc:description """Up-Regulation of hsa_circ_0000517 Predicts Adverse Prognosis of Hepatocellular Carcinoma.
-
-Cancer Specific CircRNA Database.
-
-C ancer- S pecific C ircRNA D atabase.
-
-GRCh37 GRCh38 TUTORIAL CONTACT US DOWNLOAD.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'miRDB' (bio.tools/miRDB), 'miRTarBase' (bio.tools/mirtarbase), 'hsa_circ_0000517', 'HCC'""" ;
-    sc:featureList edam:operation_3431,
-        edam:operation_3766,
-        edam:operation_3792 ;
-    sc:name "CSCD" ;
-    sc:url "http://gb.whu.edu.cn/CSCD" .
-
 <https://bio.tools/CSESA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0632,
         edam:topic_0804,
@@ -13629,7 +10711,7 @@ GRCh37 GRCh38 TUTORIAL CONTACT US DOWNLOAD.
     sc:url "https://cran.r-project.org/package=CSESA" .
 
 <https://bio.tools/CSF-PR> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_3334,
         edam:topic_3360,
@@ -13643,7 +10725,7 @@ GRCh37 GRCh38 TUTORIAL CONTACT US DOWNLOAD.
     sc:url "https://proteomics.uib.no/csf-pr/" .
 
 <https://bio.tools/CSHMM> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_2229,
@@ -13665,7 +10747,7 @@ GRCh37 GRCh38 TUTORIAL CONTACT US DOWNLOAD.
     biotools:primaryContact "Ziv Bar-Joseph" .
 
 <https://bio.tools/CSI_NGS_Portal> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application",
         "Workflow" ;
@@ -13685,7 +10767,7 @@ CSI NGS Portal uses a single, randomly generated, persistent, secure and http-on
     sc:url "https://csibioinfo.nus.edu.sg/csingsportal" .
 
 <https://bio.tools/CSMD> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0196,
@@ -13709,7 +10791,7 @@ CSMD will work with a series of libraries listed in Table 2, including human-rel
     sc:url "https://github.com/liuyu8721/csmd" .
 
 <https://bio.tools/CTRL> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2229,
         edam:topic_3318,
@@ -13727,61 +10809,8 @@ Kai Yao, Nash D Rochman, Sean X Sun (*ssun@jhu.edu) @ Johns Hopkins University""
     sc:name "Cell Topography Regression Learner (CTRL)" ;
     sc:url "https://GitHub.com/sxslabjhu/CTRL" .
 
-<https://bio.tools/CTS> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0108,
-        edam:topic_2269,
-        edam:topic_3305,
-        edam:topic_3379 ;
-    sc:citation <https://doi.org/10.1017/CTS.2017.160>,
-        "pmcid:PMC6799201" ;
-    sc:description """Integrating Epidemiology and Biostatistics teaching using the case method.
-
-Journal of Clinical and Translational Science.
-
-Journal of Clinical and Translational Science - Lars F. Berglund, M.D., Ph.D, George A. Mashour, MD, PhD.
-
-Skip to main content Accessibility help.
-
-We use cookies to distinguish you from other users and to provide you with a better experience on our websites. Close this message to accept cookies or find out how to manage your cookie settings .
-
-The mission of the Journal of Clinical and Translational Science (JCTS) is to provide a forum for disseminating advances in clinical and translational science""" ;
-    sc:featureList edam:operation_3659 ;
-    sc:name "CTS" ;
-    sc:url "http://cambridge.org/jcts" .
-
-<https://bio.tools/CURLS> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0634,
-        edam:topic_3305,
-        edam:topic_3335,
-        edam:topic_3421 ;
-    sc:citation <https://doi.org/10.1186/S13089-019-0149-0>,
-        "pubmed:31883027" ;
-    sc:description """towards a wider use of basic echo applications in Africa.
-
-BACKGROUND:Point-of-care ultrasound is increasingly being used as a diagnostic tool in resource-limited settings. The majority of existing ultrasound protocols have been developed and implemented in high-resource settings. In sub-Saharan Africa (SSA), patients with heart failure of various etiologies commonly present late in the disease process, with a similar syndrome of dyspnea, edema and cardiomegaly on chest X-ray. The causes of heart failure in SSA differ from those in high-resource settings. Point-of-care ultrasound has the potential to identify the underlying etiology of heart failure, and lead to targeted therapy.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'ultrasound', 'Cardiac ultrasound resource-limited settings', 'high-resource', 'cardiomegaly SSA'""" ;
-    sc:name "CURLS" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31883027" .
-
-<https://bio.tools/CUT_and_RUNTools> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0102,
-        edam:topic_3169,
-        edam:topic_3534 ;
-    sc:citation <https://doi.org/10.1186/S13059-019-1802-4>,
-        "pmcid:PMC6734249",
-        "pubmed:31500663" ;
-    sc:description "a flexible pipeline for CUT&RUN processing and footprint analysis | We introduce CUT&RUNTools as a flexible, general pipeline for facilitating the identification of chromatin-associated protein binding and genomic footprinting analysis from antibody-targeted CUT&RUN primary cleavage data. CUT&RUNTools extracts endonuclease cut site information from sequences of short-read fragments and produces single-locus binding estimates, aggregate motif footprints, and informative visualizations to support the high-resolution mapping capability of CUT&RUN. CUT&RUNTools is available at https: bitbucket.org qzhudfci cutruntools" ;
-    sc:featureList edam:operation_3192,
-        edam:operation_3222,
-        edam:operation_3436 ;
-    sc:name "CUT and RUNTools" ;
-    sc:url "https://bitbucket.org/qzhudfci/cutruntools/" .
-
 <https://bio.tools/CVRMS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3360,
@@ -13795,7 +10824,7 @@ BACKGROUND:Point-of-care ultrasound is increasingly being used as a diagnostic t
     sc:url "https://github.com/gtayana/CVRMS" .
 
 <https://bio.tools/CWL_VM_environment> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:author "Felix Xavier Amaladoss" ;
     sc:description "CWL VM environment is a repository which can be deployed on cloud to execute Biobb Mutations Workflow." ;
@@ -13806,7 +10835,7 @@ BACKGROUND:Point-of-care ultrasound is increasingly being used as a diagnostic t
     sc:url "https://github.com/EMBL-EBI-TSI/cpa-bioexcel-cwl" .
 
 <https://bio.tools/CYBERTRACK> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_2269,
@@ -13823,7 +10852,7 @@ CYBERTRACK is an R package for CYtometry-Based Estimation and Reasoning for cell
     sc:url "https://github.com/kodaim1115/CYBERTRACK" .
 
 <https://bio.tools/CYSMA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0634,
@@ -13849,19 +10878,8 @@ If you are dealing with the genetics of cystic fibrosis or CFTR-related disorder
     sc:name "CYSMA" ;
     sc:url "https://cftr.iurc.montp.inserm.fr/cysma/" .
 
-<https://bio.tools/CYTO_Lab_Hacks> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0602,
-        edam:topic_3361 ;
-    sc:citation <https://doi.org/10.7287/PEERJ.PREPRINTS.27944V1> ;
-    sc:description "> LOW CONFIDENCE! | A platform for the exchange of innovations in cytometry | CYTO Lab Hacks – A platform for the exchange of innovations in cytometry | This program applies predefined sort templates to your BD Influx workspace. Applying a complex sort layout to a cell sorter… | Automatic Monitor of Sample Acquisition Quality" ;
-    sc:featureList edam:operation_3431,
-        edam:operation_3695,
-        edam:operation_3802 ;
-    sc:name "CYTO Lab Hacks" ;
-    sc:url "http://bit.ly/CytoLabHacks" .
-
 <https://bio.tools/CaFE_Calculation_of_Free_Energy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0176,
         edam:topic_0209,
@@ -13882,7 +10900,7 @@ If you are dealing with the genetics of cystic fibrosis or CFTR-related disorder
     biotools:primaryContact "Tingjun Hou" .
 
 <https://bio.tools/CaPTk> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3298,
         edam:topic_3384,
@@ -13911,7 +10929,7 @@ CaPTk is a software platform for analysis of radiographic cancer images, current
     sc:url "http://www.cbica.upenn.edu/captk" .
 
 <https://bio.tools/CaSiAn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3068 ;
@@ -13928,7 +10946,7 @@ CaPTk is a software platform for analysis of radiographic cancer images, current
     biotools:primaryContact "Alexander Skupin" .
 
 <https://bio.tools/Cafe_Variome> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3325,
@@ -13947,7 +10965,7 @@ CaPTk is a software platform for analysis of radiographic cancer images, current
     sc:url "https://www.cafevariome.org/" .
 
 <https://bio.tools/CancerA1DE> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3360,
@@ -13970,14 +10988,13 @@ CaPTk is a software platform for analysis of radiographic cancer images, current
 
 <https://bio.tools/CancerGeneNet> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2526" ;
-            sc:name "Text data" ;
-            sc:sameAs "http://edamontology.org/data_2526" ] ;
+            sc:additionalType "http://edamontology.org/data_2526" ;
+            sc:encodingFormat "http://edamontology.org/format_3242" ;
+            sc:name "Text data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:name "Pathway or network" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602 ;
     sc:author "Elisa Micarelli",
         "Prisca Lo SUrdo" ;
@@ -13993,7 +11010,7 @@ CaPTk is a software platform for analysis of radiographic cancer images, current
     biotools:primaryContact "Luana Licata" .
 
 <https://bio.tools/CancerLSP> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3173,
         edam:topic_3375 ;
@@ -14008,7 +11025,7 @@ CaPTk is a software platform for analysis of radiographic cancer images, current
     sc:url "http://webs.iiitd.edu.in/raghava/cancerlsp/" .
 
 <https://bio.tools/CancerMine> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0218,
@@ -14031,7 +11048,7 @@ CaPTk is a software platform for analysis of radiographic cancer images, current
     biotools:primaryContact "Jake Lever" .
 
 <https://bio.tools/CancerSPP> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0659,
         edam:topic_2640,
@@ -14059,7 +11076,7 @@ CancerSPP is a web-bench for skin cutaneous melanoma (SKCM) progression predicti
     sc:url "http://webs.iiitd.edu.in/raghava/cancerspp/" .
 
 <https://bio.tools/CancerTracer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0219,
         edam:topic_2640,
@@ -14078,30 +11095,30 @@ CancerTracer is a manually curated and integrated database aims to help research
 
 <https://bio.tools/CandiMeth> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2526" ;
-            sc:name "Text data" ;
-            sc:sameAs "http://edamontology.org/data_2526" ],
+            sc:additionalType "http://edamontology.org/data_2526" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Text data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2526" ;
-            sc:name "Text data" ;
-            sc:sameAs "http://edamontology.org/data_2526" ],
+            sc:additionalType "http://edamontology.org/data_2526" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Text data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3108" ;
-            sc:name "Experimental measurement" ;
-            sc:sameAs "http://edamontology.org/data_3108" ],
+            sc:additionalType "http://edamontology.org/data_2526" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Text data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2526" ;
-            sc:name "Text data" ;
-            sc:sameAs "http://edamontology.org/data_2526" ] ;
+            sc:additionalType "http://edamontology.org/data_3108" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Experimental measurement" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2526" ;
-            sc:name "Text data" ;
-            sc:sameAs "http://edamontology.org/data_2526" ],
+            sc:additionalType "http://edamontology.org/data_2526" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Text data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2526" ;
-            sc:name "Text data" ;
-            sc:sameAs "http://edamontology.org/data_2526" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2526" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Text data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_3307 ;
     sc:description "Using existing tools in the Galaxy environment we generated the workflow CandiMeth (CANDIdate feature METHylation). This takes as input a differential methylation table from an R-based package and maps it to a reference genome build. A simple interface then allows the user to query the dataset with inputs as straightforward as lists of gene names, or as detailed as bed files containing specific chromosomal coordinates, for more sophisticated analyses." ;
@@ -14114,51 +11131,8 @@ CancerTracer is a manually curated and integrated database aims to help research
     sc:url "http://bit.do/candimeth-github" ;
     biotools:primaryContact "Colum Walsh" .
 
-<https://bio.tools/Cannabis> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0080,
-        edam:topic_0121,
-        edam:topic_0154,
-        edam:topic_0780,
-        edam:topic_3520 ;
-    sc:citation <https://doi.org/10.1101/786186> ;
-    sc:description """The First Publicly Available Annotated Genome for Cannabis plants.
-
-Interactive Proteome Draft Map Portal.
-
-Cannabis science is still in it's infancy.
-
-Click here to enter the Draft Portal V1.0.0.
-
-Please note, this database only includes the 3,421 gene products that can be perfectly aligned to the C.sativa genome. Error tolerant alignment is coming soon.
-
-We are currently constructing protein FASTA databases for use in Cannabis proteomics. The lack of annotated sequences has impeded the study of Cannabis. We have worked to create a resource to enable and advance future research.
-
-We have utilized high pressure ultra high resolution mass spectrometry (LC-MS MS) to acquire millions of mass spectra from proteins of dozens of cannabis materials.
-
-||| COMMON LINK WITH (PUB. & NAME DIFFERENT) bio.tools/CannabisDraftMap (CANNABISDRAFTMAP.ORG).
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'Draft Map'""" ;
-    sc:featureList edam:operation_0362,
-        edam:operation_3208,
-        edam:operation_3431 ;
-    sc:name "Cannabis" ;
-    sc:url "http://www.CannabisDraftmap.org" .
-
-<https://bio.tools/CannabisDraftMap> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0121,
-        edam:topic_0780,
-        edam:topic_3172 ;
-    sc:citation <https://doi.org/10.1101/753400>,
-        <https://doi.org/10.1101/786186> ;
-    sc:description "> LOW CONFIDENCE! | > CORRECT NAME OF TOOL COULD ALSO BE 'Cannabis', 'Cannabis flower', 'cannabinoids', 'CannabisDraftMap Org' | The Cannabis Multi-Omics Draft Map Project | Cannabis science is still in it's infancy | Here you will find the current status and access to:" ;
-    sc:featureList edam:operation_0417,
-        edam:operation_3501,
-        edam:operation_3645 ;
-    sc:name "CannabisDraftMap" ;
-    sc:url "http://www.CannabisDraftMap.org" .
-
 <https://bio.tools/Canvass> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0209,
@@ -14174,7 +11148,7 @@ We have utilized high pressure ultra high resolution mass spectrometry (LC-MS MS
     sc:url "https://tripod.nih.gov/canvass" .
 
 <https://bio.tools/CaptureProbe> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0632,
         edam:topic_0634,
         edam:topic_0654 ;
@@ -14190,7 +11164,7 @@ Citation: MA Y F, ADEOLA A C, SUN Y B, et al. 2020. CaptureProbe: a java tool fo
     sc:url "https://sourceforge.net/projects/captureprobe/" .
 
 <https://bio.tools/CardiacPBPK> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3172,
         edam:topic_3300,
@@ -14215,7 +11189,7 @@ physiologically based pharmacokinetic-quantitative system.
     sc:url "https://github.com/jszlek/CardiacPBPK" .
 
 <https://bio.tools/CardiacProfileR> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0625,
@@ -14237,7 +11211,7 @@ physiologically based pharmacokinetic-quantitative system.
     biotools:primaryContact "Victor Chang Cardiac Research Institute" .
 
 <https://bio.tools/CardioFAN> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_3360,
         edam:topic_3444 ;
@@ -14254,73 +11228,8 @@ physiologically based pharmacokinetic-quantitative system.
     sc:url "https://github.com/YasharVahedein/CardioFAN" ;
     biotools:primaryContact "Yashar Seyed Vahedein" .
 
-<https://bio.tools/Caregiver_Decision_Guide> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0749,
-        edam:topic_2640,
-        edam:topic_3376,
-        edam:topic_3403,
-        edam:topic_3420 ;
-    sc:citation <https://doi.org/10.1177/1049732319887166>,
-        "pubmed:31744378" ;
-    sc:description """Development and Implementation of the Family Caregiver Decision Guide.
-
-The purpose of this website is to guide us through the decisions that we make every day as we care for a family member or friend who has a serious illness.
-
-I am a caregiver for a family member living with a life-limiting illness.
-
-I would like to plan for possible changes in caregiving for my family member.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'Caregiver', 'FCDG'""" ;
-    sc:name "Caregiver Decision Guide" ;
-    sc:url "https://www.caregiverdecisionguide.ca" .
-
-<https://bio.tools/CartograTree_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0102,
-        edam:topic_0625,
-        edam:topic_3174 ;
-    sc:citation <https://doi.org/10.7287/PEERJ.PREPRINTS.2345V3>,
-        <https://doi.org/10.7287/PEERJ.PREPRINTS.2345V4> ;
-    sc:description """Enabling landscape genomics for forest trees.
-
-Forest trees cover just over 30% of the earth's surface and are studied by researchers around the world for both their conservation and economic value. With the onset of high throughput technologies, tremendous phenotypic and genomic data sets have been generated for hundreds of species. These long-lived and immobile individuals serve as ideal models to assess population structure and adaptation to environment. Despite the availability of comprehensive data, researchers are challenged to integrate genotype, phenotype, and environment in one place. Towards this goal, CartograTree was designed and implemented as an open repository and open-source analytic framework for genomic, phenotypic, and environmental data for forest trees.
-
-||| HOMEPAGE MISSING!.
-
-||| NAME EQUAL TO (PUB. DIFFERENT) bio.tools/cartogratree""" ;
-    sc:featureList edam:operation_0282,
-        edam:operation_2422,
-        edam:operation_3196 ;
-    sc:name "CartograTree_autogenerated" ;
-    sc:url "https://doi.org/10.7287/PEERJ.PREPRINTS.2345V4" .
-
-<https://bio.tools/Caryocar> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0196,
-        edam:topic_0632,
-        edam:topic_0780,
-        edam:topic_2885,
-        edam:topic_3168 ;
-    sc:citation <https://doi.org/10.1016/J.DIB.2019.104543>,
-        "pmcid:PMC6811913",
-        "pubmed:31667304" ;
-    sc:description """Data on the draft genome sequence of Caryocar brasiliense Camb. (Caryocaraceae).
-
-A BioProject is a collection of biological data related to a single initiative, originating from a single organization or from a consortium. A BioProject record provides users a single place to find links to the diverse data types generated for that project.
-
-Caryocar brasiliense isolate:Cbr1_UFG_LGBio.
-
-See also 1 genome matching your organism search.
-
-||| COMMON LINK WITH (PUB. & NAME DIFFERENT) bio.tools/bioproject (NLM.NIH.GOV/bioproject).
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'brasiliense', 'Data draft genome sequence Caryocar brasiliense Camb Caryocaraceae', 'Caryocar brasiliense'""" ;
-    sc:featureList edam:operation_0308,
-        edam:operation_0525,
-        edam:operation_3695 ;
-    sc:name "Caryocar" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/bioproject/?term=caryocar" .
-
 <https://bio.tools/Cas-analyzer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_3168,
@@ -14339,35 +11248,8 @@ See also 1 genome matching your organism search.
     biotools:primaryContact "Jin-Soo Kim",
         "Sangsu Bae" .
 
-<https://bio.tools/CasIIgly_MALAT1_miR175p_FZD2> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0602,
-        edam:topic_0659,
-        edam:topic_3512 ;
-    sc:citation <https://doi.org/10.3892/OR.2019.7268>,
-        "pmcid:PMC6718102",
-        "pubmed:31524268" ;
-    sc:description "> VERY_LOW CONFIDENCE! | > HOMEPAGE MISSING! | > CORRECT NAME OF TOOL COULD ALSO BE 'MALAT1 miR175p FZD2', 'MALAT1 miR175p FZD2 Wnt', 'CasIIgly MALAT1 miR175p', 'miR175p FZD2' | Casiopeina II‑gly acts on lncRNA MALAT1 by miR‑17‑5p to inhibit FZD2 expression via the Wnt signaling pathway during the treatment of cervical carcinoma | The present study investigated the underlying regulatory network involved in the differential expression of metastasis associated lung adenocarcinoma transcript 1 (MALAT1) long non‑coding (lnc)RNA, microRNA‑17‑5p (miR‑17‑5p) and frizzled class receptor 2 (FZD2) mRNA under the influence of Casiopeina II‑gly (Cas‑II‑gly) via the Wnt signaling pathway in cervical carcinoma (CC). The gene expression data were obtained from the Gene Expression Omnibus database (https: www.ncbi.nlm.nih.gov geo ), and the differentially expressed genes were determined using R software" ;
-    sc:featureList edam:operation_2436,
-        edam:operation_3223,
-        edam:operation_3642 ;
-    sc:name "CasIIgly MALAT1 miR175p FZD2" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31524268" .
-
-<https://bio.tools/CasPDB> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0154,
-        edam:topic_0623,
-        edam:topic_3174 ;
-    sc:citation <https://doi.org/10.1093/DATABASE/BAZ093>,
-        "pmcid:PMC6693189",
-        "pubmed:31411686" ;
-    sc:description "an integrated and annotated database for Cas proteins from bacteria and archaea | Expanding the Catalog of cas Geness with Metagenomes | Expanding the Catalog of cas Genes with Metagenomes | CRISPR-Cas systems are RNA-based immune systems present in many bacteria and most archaea, almost composed of the CRISPR loci and cas gene | This website deposites the Cas proteins predicted from complete/draft genomes and metagenomes | Please cite this paper: Quan Zhang, Thomas G" ;
-    sc:featureList edam:operation_0435,
-        edam:operation_3431 ;
-    sc:name "CasPDB" ;
-    sc:url "http://omics.informatics.indiana.edu/mg/CAS" .
-
 <https://bio.tools/Cascabel> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_0780,
         edam:topic_3168,
@@ -14386,7 +11268,7 @@ CASCABEL is a pipeline designed to run amplicon sequence analysis across single
     sc:url "https://github.com/AlejandroAb/CASCABEL" .
 
 <https://bio.tools/Cassiopeia> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0749,
         edam:topic_2229 ;
@@ -14411,7 +11293,7 @@ Target Site Sequencing Pipeline: a pipeline for extracing lineage information fr
     sc:url "http://www.github.com/YosefLab/Cassiopeia" .
 
 <https://bio.tools/Catalysis_Hub> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2258,
@@ -14435,7 +11317,7 @@ Target Site Sequencing Pipeline: a pipeline for extracing lineage information fr
         "Thomas Bligaard" .
 
 <https://bio.tools/CauseMap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3407,
         edam:topic_3577 ;
@@ -14459,7 +11341,7 @@ CauseMap is an implementation of Convergent Cross Mapping (CCM) [1], written in
     sc:url "http://cyrusmaher.github.io/CauseMap.jl" .
 
 <https://bio.tools/CellAge> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0659,
         edam:topic_3399 ;
@@ -14472,7 +11354,7 @@ CauseMap is an implementation of Convergent Cross Mapping (CCM) [1], written in
     sc:url "https://genomics.senescence.info/cells/" .
 
 <https://bio.tools/CellAssign> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_2830,
         edam:topic_3170 ;
@@ -14486,7 +11368,7 @@ CauseMap is an implementation of Convergent Cross Mapping (CCM) [1], written in
     sc:url "https://github.com/irrationone/cellassign" .
 
 <https://bio.tools/CellBench> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0769,
         edam:topic_3170 ;
@@ -14506,7 +11388,7 @@ This package contains infrastructure for benchmarking analysis methods and acces
     sc:url "https://bioconductor.org/packages/CellBench" .
 
 <https://bio.tools/CellBender> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0203,
         edam:topic_3170 ;
@@ -14529,7 +11411,7 @@ Stephen J Fleming, John C Marioni, and Mehrtash Babadi. CellBender remove-backgr
     sc:url "https://github.com/broadinstitute/CellBender" .
 
 <https://bio.tools/CellCountCV> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_2229,
         edam:topic_3292,
@@ -14548,30 +11430,8 @@ Working_with_CellCounter.ipynb — this notebook contains the examples of pretra
     sc:name "CellCountCV" ;
     sc:url "http://cellcounter.nprog.ru/" .
 
-<https://bio.tools/CellMiner> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0080,
-        edam:topic_0121,
-        edam:topic_0208,
-        edam:topic_2640,
-        edam:topic_3520 ;
-    sc:citation <https://doi.org/10.1016/J.ISCI.2019.10.059>,
-        "pmcid:PMC6889472",
-        "pubmed:31733513" ;
-    sc:description """Quantitative Proteome Landscape of the NCI-60 Cancer Cell Lines.
-
-CellMiner Cross Database (CellMinerCDB) is the first web application to allow translational researchers to conduct analyses across all major cancer cell line pharmacogenomic data sources from NCI-DTP NCI-60, Sanger GDSC, and Broad CCLE/CTRP.
-
-Skip over navigation CellMiner NCI-60 NCI/DCTD/DTP.
-
-This page provides automation of several commonly done analyses. For a complete description of the CellMiner options, go to the "Home" tab above""" ;
-    sc:featureList edam:operation_3083,
-        edam:operation_3629,
-        edam:operation_3799 ;
-    sc:name "CellMiner" ;
-    sc:url "http://discover.nci.nih.gov/cellminercdb" .
-
 <https://bio.tools/CellMinerCDB> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0208,
         edam:topic_3170,
@@ -14596,7 +11456,7 @@ This page provides automation of several commonly done analyses. For a complete
     sc:url "https://discover.nci.nih.gov/cellminercdb/" .
 
 <https://bio.tools/CellProfiler> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3382,
@@ -14616,7 +11476,7 @@ This page provides automation of several commonly done analyses. For a complete
     sc:url "https://cellprofiler.org/" .
 
 <https://bio.tools/CellSim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2229,
@@ -14636,7 +11496,7 @@ This page provides automation of several commonly done analyses. For a complete
     sc:url "http://www.cellsim.nwsuaflmz.com/" .
 
 <https://bio.tools/CellSort> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_2229,
@@ -14656,7 +11516,7 @@ This page provides automation of several commonly done analyses. For a complete
     biotools:primaryContact "Keith E. J. Tyo" .
 
 <https://bio.tools/CellTag> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_2229,
@@ -14679,25 +11539,8 @@ This page provides automation of several commonly done analyses. For a complete
     sc:url "https://github.com/morris-lab/CellTag-Classifier" ;
     biotools:primaryContact <https://orcid.org/0000-0001-8561-4340> .
 
-<https://bio.tools/CellWell> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0108,
-        edam:topic_3300,
-        edam:topic_3368,
-        edam:topic_3382 ;
-    sc:citation <https://doi.org/10.1101/790030> ;
-    sc:description """A micropatterned biphasic nanocomposite platform for culturing chondrocytes.
-
-Graphical Abstract <jats:fig id="ufig1" position="float" fig-type="figure" orientation="portrait"><jats:graphic xmlns:xlink="http: www.w3.org 1999 xlink" xlink:href="790030v1_ufig1" position="float" orientation="portrait" > Abstract We present a unique micropatterned nanocomposite cell culture platform to model articular cartilage that is suitable for high-throughput single-cell analyses using standard imaging techniques. This platform, the CellWell, is constructed out of a thin, optically transparent substrate that is lithographically micropatterned with a network of wells sized to fit individual cells. The substrate material consists of a thin layer of agarose hydrogel embedded with polyvinyl alcohol nanofibers.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'xmlns:xlink', 'xlink:href790030v1_ufig1', 'micropatterned'""" ;
-    sc:featureList edam:operation_3216 ;
-    sc:name "CellWell" ;
-    sc:url "https://doi.org/10.1101/790030" .
-
 <https://bio.tools/Cell_Studio> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0804,
         edam:topic_2229,
@@ -14717,28 +11560,8 @@ Graphical Abstract <jats:fig id="ufig1" position="float" fig-type="figure" orien
     sc:url "http://www.cellstudio.info" ;
     biotools:primaryContact "Uri Nevo" .
 
-<https://bio.tools/Cell_fishing> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0203,
-        edam:topic_0605,
-        edam:topic_0621,
-        edam:topic_2229,
-        edam:topic_3474 ;
-    sc:citation <https://doi.org/10.1371/JOURNAL.PONE.0223276>,
-        "pmcid:PMC6779297",
-        "pubmed:31589649" ;
-    sc:description """A similarity based approach and machine learning strategy for multiple cell lines-compound sensitivity prediction.
-
-The prediction of cell-lines sensitivity to a given set of compounds is a very important factor in the optimization of in-vitro assays. To date, the most common prediction strategies are based upon machine learning or other quantitative structure-activity relationships (QSAR) based approaches. In the present research, we propose and discuss a straightforward strategy not based on any learning modelling but exclusively relying upon the chemical similarity of a query compound to reference compounds with annotated activity against cell lines. We also compare the performance of the proposed method to machine learning predictions on the same problem. A curated database of compounds-cell lines associations derived from ChemBL version 22 was created for algorithm construction and cross-validation.
-
-||| HOMEPAGE BROKEN!""" ;
-    sc:featureList edam:operation_0224,
-        edam:operation_2495,
-        edam:operation_3799 ;
-    sc:name "Cell fishing" ;
-    sc:url "http://bioquimio.udla.edu.ec/cellfishing" .
-
 <https://bio.tools/Census_Travel> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0780,
         edam:topic_3305,
@@ -14759,7 +11582,7 @@ The prediction of cell-lines sensitivity to a given set of compounds is a very i
     biotools:primaryContact <https://orcid.org/0000-0003-0885-8004> .
 
 <https://bio.tools/Cerebro> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Library" ;
     sc:applicationSubCategory edam:topic_0602,
@@ -14776,20 +11599,8 @@ The prediction of cell-lines sensitivity to a given set of compounds is a very i
         "Windows" ;
     sc:url "https://github.com/romanhaa/Cerebro" .
 
-<https://bio.tools/CeutaOPEN> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0610,
-        edam:topic_0625,
-        edam:topic_0780 ;
-    sc:citation <https://doi.org/10.1101/2019.12.20.884825> ;
-    sc:description """Individual-based field observations of breeding snowy plovers Charadrius nivosus.
-
-(Sorry about that, but we can’t show files that are this big right now.)""" ;
-    sc:featureList edam:operation_3196 ;
-    sc:name "CeutaOPEN" ;
-    sc:url "https://github.com/leberhartphillips/Ceuta_OPEN/blob/master/R/Ceuta_OPEN.html" .
-
 <https://bio.tools/Cgrid> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3304,
         edam:topic_3444,
         edam:topic_3473 ;
@@ -14805,10 +11616,10 @@ The prediction of cell-lines sensitivity to a given set of compounds is a very i
 
 <https://bio.tools/ChAsE_Chromatin_Analysis_and_Exploration> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1916" ;
-            sc:name "Alignment" ;
-            sc:sameAs "http://edamontology.org/data_1916" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1916" ;
+            sc:encodingFormat "http://edamontology.org/format_3006" ;
+            sc:name "Alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3173 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btw382>,
@@ -14833,7 +11644,7 @@ The prediction of cell-lines sensitivity to a given set of compounds is a very i
     biotools:primaryContact "Hamid Younesy" .
 
 <https://bio.tools/ChEA3> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3170,
@@ -14856,7 +11667,7 @@ The prediction of cell-lines sensitivity to a given set of compounds is a very i
     biotools:primaryContact <https://orcid.org/0000-0002-6904-1017> .
 
 <https://bio.tools/ChIA-PET> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3169,
@@ -14876,22 +11687,8 @@ The prediction of cell-lines sensitivity to a given set of compounds is a very i
     sc:url "https://github.com/GuoliangLi-HZAU/ChIA-PET_Tool_V3/" ;
     biotools:primaryContact "Guoliang Li" .
 
-<https://bio.tools/ChIP-Seq_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0128,
-        edam:topic_0749,
-        edam:topic_3169 ;
-    sc:citation <https://doi.org/10.1371/JOURNAL.PONE.0221760>,
-        "pmcid:PMC6715275",
-        "pubmed:31465497" ;
-    sc:description "> LOW CONFIDENCE! | > NAME EQUAL TO (PUB. DIFFERENT) bio.tools/chip-seq | > NAME (ChIP-Seq) SIMILAR TO (PUB. DIFFERENT) bio.tools/chipseq (chipseq) | Population size estimation for quality control of ChIP-Seq datasets | If you are not redirected automatically, follow the link" ;
-    sc:featureList edam:operation_0389,
-        edam:operation_2428,
-        edam:operation_3435 ;
-    sc:name "ChIP-Seq_autogenerated" ;
-    sc:url "https://ict.biouml.org/bioumlweb/chipseq_analysis.html" .
-
 <https://bio.tools/ChIPSummitDB> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3169,
@@ -14914,7 +11711,7 @@ The prediction of cell-lines sensitivity to a given set of compounds is a very i
     biotools:primaryContact "Endre Barta" .
 
 <https://bio.tools/ChIPdig> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3169,
         edam:topic_3295 ;
@@ -14928,7 +11725,7 @@ The prediction of cell-lines sensitivity to a given set of compounds is a very i
     sc:url "https://github.com/rmesse/ChIPdig" .
 
 <https://bio.tools/ChIPseqSpikeInFree> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3169,
         edam:topic_3179,
         edam:topic_3295 ;
@@ -14944,7 +11741,7 @@ The prediction of cell-lines sensitivity to a given set of compounds is a very i
     sc:url "https://pecan.stjude.cloud/permalink/spikefree" .
 
 <https://bio.tools/ChIPulate> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3169,
@@ -14966,7 +11763,7 @@ The prediction of cell-lines sensitivity to a given set of compounds is a very i
     biotools:primaryContact "Vishaka Datta S" .
 
 <https://bio.tools/ChaRTr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2269 ;
     sc:citation <https://doi.org/10.1016/J.JNEUMETH.2019.108432>,
         "pmcid:PMC6980795",
@@ -14979,24 +11776,8 @@ BACKGROUND:Decision-making is the process of choosing and performing actions in
     sc:name "ChaRTr" ;
     sc:url "https://github.com/mailchand/CHaRTr" .
 
-<https://bio.tools/Chaetomium_thermophilum> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0621,
-        edam:topic_0659,
-        edam:topic_3308,
-        edam:topic_3320,
-        edam:topic_3512 ;
-    sc:citation <https://doi.org/10.1101/826354> ;
-    sc:description """Global Transcriptome Characterization and Assembly of Thermophilic Ascomycete Chaetomium thermophilum.
-
-A correct genome annotation is fundamental for research in the field of molecular and structural biology. The annotation of the reference genome Chaetomium thermophilum has been reported previously, but it is limited to open reading frames (ORFs) of genes and contains only a few noncoding transcripts. In this study, we identified and annotated by deep RNA sequencing full-length transcripts of C.thermophilum. We annotated 7044 coding genes and a large number of noncoding genes (n=4567). Astonishingly, 23% of the coding genes are alternatively spliced. We identified 679 novel coding genes and corrected the structural organization of more than 50% of the previously annotated genes. Furthermore, we substantially extended the Gene Ontology (GO) and Enzyme Commission (EC) lists, which provide comprehensive search tools for potential industrial applications and basic research""" ;
-    sc:featureList edam:operation_0362,
-        edam:operation_0558,
-        edam:operation_3258 ;
-    sc:name "Chaetomium thermophilum" ;
-    sc:url "https://www.bzh.uni-heidelberg.de/brunner/Chaetomium_thermophilum" .
-
 <https://bio.tools/ChaperISM> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0749 ;
     sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTZ670>,
@@ -15007,26 +11788,8 @@ A correct genome annotation is fundamental for research in the field of molecula
     sc:name "ChaperISM" ;
     sc:url "https://github.com/BioinfLab/ChaperISM" .
 
-<https://bio.tools/Checklist> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0108,
-        edam:topic_3305,
-        edam:topic_3390,
-        edam:topic_3421 ;
-    sc:citation <https://doi.org/10.1017/CTS.2017.269>,
-        "pmcid:PMC6799081" ;
-    sc:description """A checklist for developing and implementing a high-impact monitoring and evaluation system in clinical and translational science programs.
-
-WHO surgical safety checklist and implementation manual.
-
-The focus of the Challenge is the WHO Safe Surgery Checklist. The checklist identifies three phases of an operation, each corresponding to a specific period in the normal flow of work: Before the induction of anaesthesia (“sign in”), before the incision of the skin (“time out”) and before the patient leaves the operating room (“sign out”). In each phase, a checklist coordinator must confirm that the surgery team has completed the listed tasks before it proceeds with the operation.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'organiziationevalcapacity', 'Surgical Safety Checklist', 'M and E', 'M and E Checklist'""" ;
-    sc:featureList edam:operation_3454 ;
-    sc:name "Checklist" ;
-    sc:url "http://www.who.int/patientsafety/safesurgery/ss_checklist/en/" .
-
 <https://bio.tools/ChemAGG> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3336,
         edam:topic_3373 ;
@@ -15039,7 +11802,7 @@ The focus of the Challenge is the WHO Safe Surgery Checklist. The checklist iden
     sc:url "http://admet.scbdd.com/ChemAGG/index" .
 
 <https://bio.tools/ChemDataExtractor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0593,
         edam:topic_2258,
         edam:topic_3316,
@@ -15061,7 +11824,7 @@ ChemDataExtractor toolkit tailored towards UV/vis absorption spectroscopy peak d
     sc:url "http://chemdataextractor.org/" .
 
 <https://bio.tools/ChemEnv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:citation <https://doi.org/10.1107/S2052520620007994>,
         <https://doi.org/10.26434/CHEMRXIV.11294480.V1>,
         "pmcid:PMC7412753",
@@ -15073,7 +11836,7 @@ Coordination or local environments have been used to describe, analyze, and unde
     sc:url "https://doi.org/10.26434/CHEMRXIV.11294480.V1" .
 
 <https://bio.tools/ChemPager> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3314 ;
     sc:citation <https://doi.org/10.2533/CHIMIA.2019.724>,
@@ -15084,7 +11847,7 @@ Coordination or local environments have been used to describe, analyze, and unde
     sc:url "https://www.ingentaconnect.com/content/scs/chimia/2019/00000073/00000009/art00007/supp-data/content-2019_73_9_724" .
 
 <https://bio.tools/ChemSuite> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_2258,
         edam:topic_3474 ;
@@ -15102,7 +11865,7 @@ Coordination or local environments have been used to describe, analyze, and unde
     sc:url "http://14.139.57.41/chemsuiteweb/" .
 
 <https://bio.tools/ChiCMaxima> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3169,
@@ -15125,7 +11888,7 @@ Coordination or local environments have been used to describe, analyze, and unde
         "Y. Ben Zouari" .
 
 <https://bio.tools/Chi_Bio> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0632,
         edam:topic_3070,
         edam:topic_3361 ;
@@ -15139,26 +11902,21 @@ By combining heating, stirring, liquid handling, spectrometry, and optogenetics
 
 <https://bio.tools/ChickpeaMine> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2353" ;
-            sc:name "Ontology data" ;
-            sc:sameAs "http://edamontology.org/data_2353" ],
+            sc:additionalType "http://edamontology.org/data_2353" ;
+            sc:name "Ontology data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ] ;
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:name "Sequence features" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3753" ;
-            sc:name "Over-representation data" ;
-            sc:sameAs "http://edamontology.org/data_3753" ],
+            sc:additionalType "http://edamontology.org/data_3786" ;
+            sc:name "Query script" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3786" ;
-            sc:name "Query script" ;
-            sc:sameAs "http://edamontology.org/data_3786" ],
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:name "Sequence features" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3753" ;
+            sc:name "Over-representation data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application",
         "Web service" ;
@@ -15182,7 +11940,7 @@ By combining heating, stirring, liquid handling, spectrometry, and optogenetics
     sc:url "https://mines.legumeinfo.org/chickpeamine" .
 
 <https://bio.tools/Chickspress> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3500,
@@ -15200,22 +11958,8 @@ By combining heating, stirring, liquid handling, spectrometry, and optogenetics
         "Fiona M McCarthy",
         "Shane C Burgess" .
 
-<https://bio.tools/Chimera_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0130,
-        edam:topic_3382,
-        edam:topic_3474 ;
-    sc:citation <https://doi.org/10.3390/MEDICINES6030086>,
-        "pmcid:PMC6789601",
-        "pubmed:31390767" ;
-    sc:description "> VERY_LOW CONFIDENCE! | > NAME EQUAL TO (PUB. DIFFERENT) bio.tools/chimera | > NAME (Chimera) SIMILAR TO (PUB. DIFFERENT) bio.tools/chimera_fusion (chimera) | > CORRECT NAME OF TOOL COULD ALSO BE 'HBOS', 'cryo-EM', 'histogram-based', 'assistant' | A Visualization Tool for Cryo-EM Protein Validation with an Unsupervised Machine Learning Model in Chimera Platform | Visualization Tool for Protein Validation in Chimera Platform" ;
-    sc:featureList edam:operation_0249,
-        edam:operation_0321,
-        edam:operation_0450 ;
-    sc:name "Chimera_autogenerated" ;
-    sc:url "https://github.com/lin-chen-VA/chimeraplugin" .
-
 <https://bio.tools/Chipper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3382,
         edam:topic_3489,
         edam:topic_3500 ;
@@ -15231,7 +11975,7 @@ Abstract <jats:list list-type="order"><jats:list-item> Audio recording devices h
     sc:url "https://github.com/asearfos/chipper" .
 
 <https://bio.tools/ChlamDB> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0797,
         edam:topic_3293,
@@ -15254,7 +11998,7 @@ Problems and errors encountered on the ChlamDB website can be announced on the g
     sc:url "https://chlamdb.ch/" .
 
 <https://bio.tools/Chordomics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0121,
         edam:topic_3697 ;
@@ -15268,7 +12012,7 @@ Problems and errors encountered on the ChlamDB website can be announced on the g
     sc:url "https://kmcd.shinyapps.io/chordomics/" .
 
 <https://bio.tools/ChromDragoNN> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0602,
         edam:topic_3474 ;
@@ -15284,7 +12028,7 @@ Problems and errors encountered on the ChlamDB website can be announced on the g
     sc:url "https://github.com/kundajelab/ChromDragoNN" .
 
 <https://bio.tools/ChromaClade> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0749,
         edam:topic_2815,
@@ -15305,7 +12049,7 @@ ChromaClade is a desktop bioinformatics application that produces visualisations
     sc:url "http://github.com/chrismonit/chroma_clade" .
 
 <https://bio.tools/Chromatiblock> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0798,
         edam:topic_3382 ;
@@ -15328,7 +12072,7 @@ Will run chromatiblock on all fasta or genbank files in /path/to/fasta_directory
     sc:url "https://github.com/mjsull/chromatiblock/" .
 
 <https://bio.tools/CiDD> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2640,
@@ -15350,7 +12094,7 @@ Will run chromatiblock on all fasta or genbank files in /path/to/fasta_directory
     biotools:primaryContact "Paul Scheet" .
 
 <https://bio.tools/CiiiDER> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0749,
         edam:topic_3308 ;
@@ -15365,7 +12109,7 @@ Will run chromatiblock on all fasta or genbank files in /path/to/fasta_directory
     sc:url "http://www.ciiider.org" .
 
 <https://bio.tools/CiliaCarta> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0625,
@@ -15387,33 +12131,16 @@ Will run chromatiblock on all fasta or genbank files in /path/to/fasta_directory
     biotools:primaryContact <https://orcid.org/0000-0002-8122-190X>,
         "Martijn A. Huynen" .
 
-<https://bio.tools/CinemaBandit> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0769,
-        edam:topic_3318,
-        edam:topic_3382 ;
-    sc:citation <https://doi.org/10.1107/S1600577519014322>,
-        "pubmed:31868729" ;
-    sc:description """a visualization application for beamline science demonstrated on XFEL shock physics experiments.
-
-A new visualization tool, Cinema:Bandit, and its demonstration with a continuous workflow for analyzing shock physics experiments and visually exploring the data in real time at X-ray light sources is presented. Cinema:Bandit is an open-source, web-based visualization application in which the experimenter may explore an aggregated dataset to inform real-time beamline decisions and enable post hoc data analysis. The tool integrates with experimental workflows that process raw detector data into a simple database format, and it allows visualization of disparate data types, including experimental parameters, line graphs, and images. Use of parallel coordinates accommodates the irregular sampling of experimental parameters and allows for display and filtering of both experimental inputs and measurements.
-
-||| COMMON LINK WITH (PUB. & NAME DIFFERENT) bio.tools/pymzml (GITHUB.COM)""" ;
-    sc:featureList edam:operation_0337,
-        edam:operation_3436,
-        edam:operation_3695 ;
-    sc:name "Cinema:Bandit" ;
-    sc:url "https://github.com/cinema" .
-
 <https://bio.tools/Ciona_robusta_Anatomy_and_Development_Ontology> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3505" ;
-            sc:name "Bibliography" ;
-            sc:sameAs "http://edamontology.org/data_3505" ] ;
+            sc:additionalType "http://edamontology.org/data_3505" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Bibliography" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1087" ;
-            sc:name "Ontology concept ID" ;
-            sc:sameAs "http://edamontology.org/data_1087" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1087" ;
+            sc:encodingFormat "http://edamontology.org/format_2196" ;
+            sc:name "Ontology concept ID" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Ontology" ;
     sc:applicationSubCategory edam:topic_3064 ;
     sc:citation <https://doi.org/10.1093/nar/gkv966>,
@@ -15427,7 +12154,7 @@ A new visualization tool, Cinema:Bandit, and its demonstration with a continuous
     sc:url "https://www.aniseed.cnrs.fr/aniseed/anatomy/find_devstage" .
 
 <https://bio.tools/CirGO> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0089,
@@ -15451,7 +12178,7 @@ A new visualization tool, Cinema:Bandit, and its demonstration with a continuous
         "Irina Kuznetsova" .
 
 <https://bio.tools/CircCode> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0659,
         edam:topic_0749,
@@ -15473,7 +12200,7 @@ CircCode is a Python3-base pipeline for translated circular RNA identification.
     sc:url "https://github.com/PSSUN/CircCode" .
 
 <https://bio.tools/CircFunBase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web API",
         "Web application" ;
@@ -15500,7 +12227,7 @@ CircCode is a Python3-base pipeline for translated circular RNA identification.
     biotools:primaryContact "Ming Chen" .
 
 <https://bio.tools/CircPro> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_3170,
@@ -15520,7 +12247,7 @@ CircCode is a Python3-base pipeline for translated circular RNA identification.
         "Xianwen Meng" .
 
 <https://bio.tools/CircRiC> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_2640,
         edam:topic_3512 ;
@@ -15535,7 +12262,7 @@ CircCode is a Python3-base pipeline for translated circular RNA identification.
     sc:url "https://hanlab.uth.edu/cRic" .
 
 <https://bio.tools/CircaCompare> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3070 ;
     sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTZ730>,
@@ -15552,7 +12279,7 @@ Rex Parsons, Richard Parsons, Nicholas Garner, Henrik Oster, Oliver Rawashdeh, C
     sc:url "https://github.com/RWParsons/circacompare/" .
 
 <https://bio.tools/Circle-Map> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
         edam:topic_0654,
@@ -15575,7 +12302,7 @@ Circle-Map is an easy to install, python package that implements all the steps r
     sc:url "https://github.com/iprada/Circle-Map" .
 
 <https://bio.tools/Cistrome-GO> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application",
         "Web service" ;
@@ -15601,7 +12328,7 @@ Circle-Map is an easy to install, python package that implements all the steps r
         "X Shirley Liu" .
 
 <https://bio.tools/CiteFuse> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_3170,
         edam:topic_3308,
@@ -15621,7 +12348,7 @@ CiteFuse is a streamlined package consisting of a suite of tools for pre-process
     sc:url "http://SydneyBioX.github.io/CiteFuse/" .
 
 <https://bio.tools/CladePP> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3053,
@@ -15641,7 +12368,7 @@ CiteFuse is a streamlined package consisting of a suite of tools for pre-process
     biotools:primaryContact "D. Rahat" .
 
 <https://bio.tools/Clair> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0199,
@@ -15665,7 +12392,7 @@ Single-molecule sequencing technologies have emerged in recent years and revolut
     sc:url "https://github.com/HKU-BAL/Clair" .
 
 <https://bio.tools/ClassifyMe> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3382,
         edam:topic_3474,
         edam:topic_3500 ;
@@ -15682,7 +12409,7 @@ Single-molecule sequencing technologies have emerged in recent years and revolut
     sc:url "https://classifymeapp.com/" .
 
 <https://bio.tools/ClassyFire> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0089,
@@ -15700,7 +12427,7 @@ Single-molecule sequencing technologies have emerged in recent years and revolut
     sc:url "http://classyfire.wishartlab.com" .
 
 <https://bio.tools/ClickGene> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_2640,
@@ -15715,28 +12442,8 @@ Single-molecule sequencing technologies have emerged in recent years and revolut
     sc:softwareHelp <http://www.clickgenome.org/guide/> ;
     sc:url "http://www.clickgenome.org/" .
 
-<https://bio.tools/ClimCKmap> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0196,
-        edam:topic_3050,
-        edam:topic_3489 ;
-    sc:citation <https://doi.org/10.1038/S41597-019-0203-6>,
-        "pmcid:PMC6783616",
-        "pubmed:31594943" ;
-    sc:description """spatially, temporally and climatically explicit distribution database for the Italian fauna.
-
-Understanding and counteracting biodiversity losses requires quantitative knowledge on species distribution and abundance across space and time, as well as integrated and interoperable information on climate conditions and climatic changes. In this paper we developed a new biodiversity-climate database for Italy, ClimCKmap, based on the critical analysis, quality estimation and subsequent integration of the CKmap database with several high-resolution climate datasets. The original database was quality-checked for errors in toponym, species name and dating; the retained records were georeferenced and their distribution polygonised via Voronoi tessellation.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'a91f85cb befd 4e14 8e83 24f17c4a0491', 'temporally climatically', 'biodiversity-climate', 'climatically'""" ;
-    sc:featureList edam:operation_0310,
-        edam:operation_3659,
-        edam:operation_3799 ;
-    sc:name "ClimCKmap" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31594943" .
-
 <https://bio.tools/ClinCNV> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_2269,
@@ -15757,7 +12464,7 @@ A tool for large-scale CNV and CNA detection.""" ;
     sc:url "https://github.com/imgag/ClinCNV" .
 
 <https://bio.tools/ClinEpiDB> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0621,
         edam:topic_3305,
@@ -15776,7 +12483,7 @@ The concept of open data has been gaining traction as a mechanism to increase da
     sc:url "https://clinepidb.org" .
 
 <https://bio.tools/ClinOmicsTrail> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0208,
         edam:topic_2640,
@@ -15794,7 +12501,7 @@ The concept of open data has been gaining traction as a mechanism to increase da
     sc:url "https://clinomicstrail.bioinf.uni-sb.de/" .
 
 <https://bio.tools/ClinOmicsTrailbc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0208,
@@ -15817,7 +12524,7 @@ The concept of open data has been gaining traction as a mechanism to increase da
     sc:url "https://clinomicstrail.bioinf.uni-sb.de" .
 
 <https://bio.tools/ClinPred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3325,
         edam:topic_3676 ;
@@ -15834,7 +12541,7 @@ The concept of open data has been gaining traction as a mechanism to increase da
         "Najmeh Alirezaie" .
 
 <https://bio.tools/ClinTAD> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0625,
@@ -15852,7 +12559,7 @@ The concept of open data has been gaining traction as a mechanism to increase da
     sc:url "https://www.clintad.com/" .
 
 <https://bio.tools/ClinVAP> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0199,
@@ -15871,20 +12578,8 @@ The concept of open data has been gaining traction as a mechanism to increase da
     sc:name "ClinVAP" ;
     sc:url "https://github.com/PersonalizedOncology/ClinVAP" .
 
-<https://bio.tools/ClinVar_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0199,
-        edam:topic_0634,
-        edam:topic_0749 ;
-    sc:citation <https://doi.org/10.1101/723320> ;
-    sc:description "> VERY_LOW CONFIDENCE! | > NAME EQUAL TO (PUB. DIFFERENT) bio.tools/clinvar | > COMMON LINK WITH (PUB. & NAME DIFFERENT) bio.tools/clinvar (NCBI.NLM.NIH.GOV/clinvar ; NLM.NIH.GOV/clinvar), bio.tools/ncbi_resources (NLM.NIH.GOV), bio.tools/genbank (NLM.NIH.GOV) | > CORRECT NAME OF TOOL COULD ALSO BE 'MAPP' (bio.tools/mapp), 'APC', 'PMSA', 'PMSA-based' | Curated Multiple Sequence Alignment for the Adenomatous Polyposis Coli (APC) Gene and Accuracy of In Silico Pathogenicity Predictions | U.S. National Library of Medicine | ClinVar archives and aggregates information about relationships among variation and human health | National Center for Biotechnology Information | ClinVar Genomic variation as it relates to human health | National Center for Biotechnology Information. ClinVar; [VCV000428186.1], https://www.ncbi.nlm.nih.gov/clinvar/variation/VCV000428186.1 (accessed Nov. 14, 2019) | Access keys NCBI Homepage MyNCBI Homepage Main Content Main Navigation" ;
-    sc:featureList edam:operation_0446,
-        edam:operation_3225,
-        edam:operation_3461 ;
-    sc:name "ClinVar_autogenerated" ;
-    sc:url "https://preview.ncbi.nlm.nih.gov/clinvar/variation/428186/" .
-
 <https://bio.tools/CliqueMS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3172,
@@ -15905,7 +12600,7 @@ The concept of open data has been gaining traction as a mechanism to increase da
     biotools:primaryContact "Oriol Senan" .
 
 <https://bio.tools/Clirc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_3170,
@@ -15928,7 +12623,7 @@ The Clirc software is designed to identify RBP-bound circRNAs in CLIP-Seq data.
     sc:url "https://github.com/Minzhe/Clirc" .
 
 <https://bio.tools/ClonalTREE> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0199,
@@ -15950,7 +12645,7 @@ Usage: python3 ClonalTREE.py <VAF file> <algorithm> <fail threshold> <out prefix
     sc:url "https://github.com/COL-IU/ClonalTREE" .
 
 <https://bio.tools/CluMSID> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3172,
@@ -15970,88 +12665,14 @@ Usage: python3 ClonalTREE.py <VAF file> <algorithm> <fail threshold> <out prefix
     sc:url "https://github.com/tdepke/CluMSID/" ;
     biotools:primaryContact "Tobias Depke" .
 
-<https://bio.tools/Clus-Ensemble> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0121,
-        edam:topic_0637,
-        edam:topic_3474 ;
-    sc:citation <https://doi.org/10.1186/S12859-019-3060-6>,
-        "pmcid:PMC6755698",
-        "pubmed:31547800" ;
-    sc:description "> LOW CONFIDENCE! | > CORRECT NAME OF TOOL COULD ALSO BE 'HMC', 'HMC-GA', 'Machine learning discovering missing wrong protein function annotations', 'FunCat' | Machine learning for discovering missing or wrong protein function annotations | Clus is a decision tree and rule induction system that implements the predictive clustering framework. This framework unifies unsupervised clustering and predictive modelling and allows for a natural extension to more complex prediction settings such as multi-task learning and multi-label classification | Clus is co-developed by the Declarative Languages and Artificial Intelligence group of the Katholieke Universiteit Leuven, Belgium, and the Department of Knowledge Technologies of the Jožef Stefan Institute, Ljubljana, Slovenia | Clus is free software (licensed under the GPL) and can be obtained from this website" ;
-    sc:featureList edam:operation_3432 ;
-    sc:name "Clus-Ensemble" ;
-    sc:url "https://dtai.cs.kuleuven.be/clus/" .
-
-<https://bio.tools/ClusPro2> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0130,
-        edam:topic_0154,
-        edam:topic_0199,
-        edam:topic_2275,
-        edam:topic_2830 ;
-    sc:citation <https://doi.org/10.15171/APB.2019.074>,
-        "pmcid:PMC6912172",
-        "pubmed:31857969" ;
-    sc:description """The Comparison Between the Mutated HuIFN-β 27-101 and the Wild Type Interferon β.
-
-ClusPro should only be used for noncommercial purposes.
-
-Use the server without the benefits of your own account.
-
-||| NAME (ClusPro2) SIMILAR TO (PUB. DIFFERENT) bio.tools/cluspro (ClusPro).
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'asaview', 'verify3D', 'HuIFN-b mHuIFN-b-27 mHuIFN-b-101', 'HuIFN-b mHuIFN-b-27 mHuIFN-b-101 mHuIFN-b-27-101'""" ;
-    sc:featureList edam:operation_0307,
-        edam:operation_0480,
-        edam:operation_3899 ;
-    sc:name "ClusPro2" ;
-    sc:url "https://cluspro.org" .
-
-<https://bio.tools/ClusPro_LigTBM> a sc:SoftwareApplication ;
-    sc:additionalType "Web application" ;
-    sc:applicationSubCategory edam:topic_0154,
-        edam:topic_0209,
-        edam:topic_2275,
-        edam:topic_3047 ;
-    sc:citation <https://doi.org/10.1016/J.JMB.2019.12.011>,
-        "pubmed:31863748" ;
-    sc:description """Automated Template-Based Small Molecule Docking.
-
-Automated server for template-based small-molecule docking.
-
-Use the server without the benefits of your own account ».
-
-LigTBM should only be used for noncommercial purposes.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'LigTBM'""" ;
-    sc:featureList edam:operation_2421,
-        edam:operation_2492,
-        edam:operation_3899 ;
-    sc:name "ClusPro LigTBM" ;
-    sc:url "https://ligtbm.cluspro.org/" .
-
-<https://bio.tools/ClustR> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0634 ;
-    sc:citation <https://doi.org/10.1097/EDE.0000000000001122>,
-        "pubmed:31596789" ;
-    sc:description """A Space-Time Cluster Analysis R Package for Individual-level Data.
-
-BACKGROUND:Until recently, large individual-level longitudinal data were unavailable to investigate clusters of disease, driving a need for suitable statistical tools. We introduce a robust, efficient, intuitive R package, ClustR, for space-time cluster analysis of individual-level data. METHODS:We developed ClustR and evaluated the tool using a simulated dataset mirroring the population of California with constructed clusters. We assessed ClustR's performance under various conditions and compared it to another space-time clustering algorithm: SaTScan. RESULTS:ClustR mostly exhibited high sensitivity for urban clusters and low sensitivity for rural clusters. Specificity was generally high. Compared to SaTScan, ClustR ran faster and demonstrated similar sensitivity, but had lower specificity. Select cluster types were detected better by ClustR than SaTScan and vice versa.
-
-||| HOMEPAGE MISSING!""" ;
-    sc:featureList edam:operation_3432 ;
-    sc:name "ClustR" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31596789" .
-
 <https://bio.tools/ClustalW2_Phylogeny_API_EBI> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:name "Sequence alignment" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0872" ;
-            sc:name "Phylogenetic tree" ;
-            sc:sameAs "http://edamontology.org/data_0872" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0872" ;
+            sc:name "Phylogenetic tree" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3293 ;
@@ -16067,7 +12688,7 @@ BACKGROUND:Until recently, large individual-level longitudinal data were unavail
     sc:url "https://www.ebi.ac.uk/seqdb/confluence/pages/viewpage.action?pageId=54651945" .
 
 <https://bio.tools/ClusterBootstrap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0602 ;
     sc:citation <https://doi.org/10.3758/s13428-019-01252-y>,
@@ -16087,7 +12708,7 @@ BACKGROUND:Until recently, large individual-level longitudinal data were unavail
     sc:url "https://cran.r-project.org/package=ClusterBootstrap" .
 
 <https://bio.tools/ClusterBurden> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0634,
@@ -16110,7 +12731,7 @@ This method is designed for case-control studies where the condition under inves
     sc:url "https://github.com/adamwaring/ClusterBurden" .
 
 <https://bio.tools/ClusterScan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0622 ;
@@ -16127,31 +12748,22 @@ This method is designed for case-control studies where the condition under inves
     sc:url "https://github.com/pyrevo/ClusterScan" .
 
 <https://bio.tools/CmPIweb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:citation <https://doi.org/10.2390/biecoll-jib-2016-298>,
         "pubmed:28187414" ;
     sc:description "The CELLmicrocosmos 4.2 PathwayIntegration (CmPI) is a tool which provides hybrid-dimensional visualization and analysis of intracellular protein and gene localizations in the context of a virtual 3D environment. This tool is developed based on Java/Java3D/JOGL and provides a standalone application compatible to all relevant operating systems. However, it requires Java and the local installation of the software. Here we present the prototype of an alternative web-based visualization approach, using Three.js and D3.js. In this way it is possible to visualize and explore CmPI-generated localization scenarios including networks mapped to 3D cell components by just providing a URL to a collaboration partner. This publication describes the integration of the different technologies – Three.js, D3.js and PHP – as well as an application case: a localization scenario of the citrate cycle. The CmPI web viewer is available at: http://CmPIweb.CELLmicrocosmos.org." ;
     sc:name "CmPIweb" ;
     sc:url "http://CmPIweb.CELLmicrocosmos.org" .
 
-<https://bio.tools/CoAP> a sc:SoftwareApplication ;
-    sc:citation <https://doi.org/10.3390/S19153433>,
-        "pmcid:PMC6696228",
-        "pubmed:31387304" ;
-    sc:description "> LOW CONFIDENCE! | > HOMEPAGE MISSING! | > CORRECT NAME OF TOOL COULD ALSO BE 'CoCo-RED', 'congestion' | Congestion Control in CoAP Observe Group Communication | The Constrained Application Protocol (CoAP) is a simple and lightweight machine-to-machine (M2M) protocol for constrained devices for use in lossy networks which offers a small memory capacity and limited processing. Designed and developed by the Internet Engineering Task Force (IETF), it functions as an application layer protocol and benefits from reliable delivery and simple congestion control. It is implemented for request response message exchanges over the User Datagram Protocol (UDP) to support the Internet of Things (IoT). CoAP also provides a basic congestion control mechanism. In dealing with its own congestion, it relies on a fixed interval retransmission timeout (RTO) and binary exponential backoff (BEB)" ;
-    sc:name "CoAP" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31387304" .
-
 <https://bio.tools/CoBAMP> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ] ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:encodingFormat "http://edamontology.org/format_2585" ;
+            sc:name "Pathway or network" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:name "Pathway or network" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library",
         "Script" ;
@@ -16176,7 +12788,7 @@ This method is designed for case-control studies where the condition under inves
     biotools:primaryContact <https://orcid.org/0000-0001-9604-9586> .
 
 <https://bio.tools/CoCo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_3170,
@@ -16198,7 +12810,7 @@ This method is designed for case-control studies where the condition under inves
     sc:url "http://gitlabscottgroup.med.usherbrooke.ca/scott-group/coco" .
 
 <https://bio.tools/CoDReS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2258,
         edam:topic_3336,
@@ -16212,18 +12824,18 @@ This method is designed for case-control studies where the condition under inves
 
 <https://bio.tools/CoExpresso> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3021" ;
-            sc:name "UniProt accession" ;
-            sc:sameAs "http://edamontology.org/data_3021" ],
+            sc:additionalType "http://edamontology.org/data_3021" ;
+            sc:encodingFormat "http://edamontology.org/format_1963" ;
+            sc:name "UniProt accession" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2295" ;
-            sc:name "Gene ID" ;
-            sc:sameAs "http://edamontology.org/data_2295" ] ;
+            sc:additionalType "http://edamontology.org/data_2295" ;
+            sc:encodingFormat "http://edamontology.org/format_1963" ;
+            sc:name "Gene ID" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3508" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0121,
@@ -16257,7 +12869,7 @@ function.""" ;
     biotools:primaryContact "Veit Schwämmle" .
 
 <https://bio.tools/CoMM-S> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2269,
@@ -16278,7 +12890,7 @@ function.""" ;
     biotools:primaryContact "Jin Liu" .
 
 <https://bio.tools/CoMW> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3308,
@@ -16300,7 +12912,7 @@ function.""" ;
         "Muhammad Zohaib Anwar" .
 
 <https://bio.tools/CoMetGeNe> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3407 ;
@@ -16322,7 +12934,7 @@ function.""" ;
     biotools:primaryContact "Alexandra Zaharia" .
 
 <https://bio.tools/CoNekT-Plants> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -16339,7 +12951,7 @@ function.""" ;
     sc:url "http://conekt.plant.tools" .
 
 <https://bio.tools/CoPhosK> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2640,
@@ -16362,7 +12974,7 @@ function.""" ;
         "Marzieh Ayati" .
 
 <https://bio.tools/CoRNeA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0154,
@@ -16379,7 +12991,7 @@ function.""" ;
     sc:url "https://github.com/krits04/cornea" .
 
 <https://bio.tools/CoSIMS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0593,
         edam:topic_3520 ;
@@ -16398,22 +13010,8 @@ function.""" ;
     sc:url "https://github.com/ChristopherAMyers/CoSIMS" ;
     biotools:primaryContact "Alan A. Chen" .
 
-<https://bio.tools/CoaaS> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0769,
-        edam:topic_3068,
-        edam:topic_3474 ;
-    sc:citation <https://doi.org/10.3390/S19245457>,
-        "pubmed:31835743" ;
-    sc:description """Efficient Execution of Complex Context Queries to Enable Near Real-Time Smart IoT Applications.
-
-As the Internet of Things (IoT) is evolving at a fast pace, the need for contextual intelligence has become more crucial for delivering IoT intelligence, efficiency, effectiveness, performance, and sustainability. Contextual intelligence enables interactions between IoT devices such as sensors actuators, smartphones and connected vehicles, to name but a few. Context management platforms (CMP) are emerging as a promising solution to deliver contextual intelligence for IoT. However, the development of a generic solution that allows IoT devices and services to publish, consume, monitor, and share context is still in its infancy. In this paper, we propose, validate and explain the details of a novel mechanism called Context Query Engine (CQE), which is an integral part of a pioneering CMP called Context-as-a-Service (CoaaS)""" ;
-    sc:featureList edam:operation_0224,
-        edam:operation_3761 ;
-    sc:name "CoaaS" ;
-    sc:url "https://hub.docker.com/r/coaas" .
-
 <https://bio.tools/Cocoa_Genome_Hub> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0621,
@@ -16438,7 +13036,7 @@ As the Internet of Things (IoT) is evolving at a fast pace, the need for context
         <https://orcid.org/0000-0003-1849-1269> .
 
 <https://bio.tools/CodAn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0621,
@@ -16458,7 +13056,7 @@ CodAn (Coding sequence Annotator) is a computational tool designed to characteri
     sc:url "https://github.com/pedronachtigall/CodAn" .
 
 <https://bio.tools/CodataGS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0602,
@@ -16480,7 +13078,7 @@ CodAn (Coding sequence Annotator) is a computational tool designed to characteri
         "Lars Ronnegard" .
 
 <https://bio.tools/Coding-Sequence-optimization-for-Chlamydomonas-reinhardtii> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0203,
@@ -16496,7 +13094,7 @@ CodAn (Coding sequence Annotator) is a computational tool designed to characteri
     biotools:primaryContact "Iddo Weiner" .
 
 <https://bio.tools/Codonome> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_3512 ;
@@ -16510,7 +13108,7 @@ CodAn (Coding sequence Annotator) is a computational tool designed to characteri
     sc:url "http://apollo11.isto.unibo.it/software/Codonome/" .
 
 <https://bio.tools/Coffee_Genome_Hub> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0780 ;
@@ -16529,7 +13127,7 @@ CodAn (Coding sequence Annotator) is a computational tool designed to characteri
     sc:url "https://coffee-genome-hub.southgreen.fr/" .
 
 <https://bio.tools/Coinfinder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0621,
@@ -16555,7 +13153,7 @@ Written in collaboration with Martin Rusilowicz""" ;
     sc:url "https://github.com/fwhelan/coinfinder" .
 
 <https://bio.tools/ColiCoords> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3316,
         edam:topic_3382 ;
@@ -16576,7 +13174,7 @@ Written in collaboration with Martin Rusilowicz""" ;
     biotools:primaryContact "J. H. Smit" .
 
 <https://bio.tools/CollaboNet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0218,
@@ -16597,7 +13195,7 @@ Written in collaboration with Martin Rusilowicz""" ;
     biotools:primaryContact "Jaewoo Kang" .
 
 <https://bio.tools/Collector> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Web application",
         "Web service" ;
@@ -16620,7 +13218,7 @@ Written in collaboration with Martin Rusilowicz""" ;
         "Oriol L. Massaguer" .
 
 <https://bio.tools/ColocAI> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3382,
         edam:topic_3474,
         edam:topic_3520 ;
@@ -16635,7 +13233,7 @@ Written in collaboration with Martin Rusilowicz""" ;
     sc:url "https://github.com/metaspace2020/coloc" .
 
 <https://bio.tools/ColonySizeDistributions> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_2640,
@@ -16658,7 +13256,7 @@ Written in collaboration with Martin Rusilowicz""" ;
     sc:url "https://github.com/sbhoyar1/ColonySizeDistributions" .
 
 <https://bio.tools/ComHub> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0203,
@@ -16675,7 +13273,7 @@ Abstract Summary Hub transcription factors, regulating many target genes in gene
     sc:url "https://gitlab.com/Gustafsson-lab/comhub" .
 
 <https://bio.tools/ComParaLogS_-_A_comparative_platform_of_paralog_and_ortholog_genes_from_Tomato_and_Grapevine> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0085,
@@ -16691,56 +13289,8 @@ Abstract Summary Hub transcription factors, regulating many target genes in gene
     sc:softwareVersion "1" ;
     sc:url "http://biosrv.cab.unina.it/comparalogs/gene/search" .
 
-<https://bio.tools/ComSAprogram> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0102,
-        edam:topic_0621 ;
-    sc:citation <https://doi.org/10.1186/S12877-019-1271-3>,
-        "pmcid:PMC6820954",
-        "pubmed:31664899" ;
-    sc:description """Exploring the implementation of the Community for Successful Ageing (ComSA)program in Singapore.
-
-BACKGROUND:The Community for Successful Ageing (ComSA) program has implemented overlapping BioPsychoSocial (BPS) components as part of a Community Development (CD) grassroots and volunteer-led initiative. Implementation of such multi-component programming is influenced by known program characteristics including novelty, complexity and observability as well as related organizational factors. As such, we explored ComSA CD's implementation from the organizational perspective, seeking to inform program improvements. METHODS:We conducted four focus groups with program staff, partners and trainers (total N = 21 participants).
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'Exploring implementation Community Successful Ageing Singapore', 'ComSA', 'BioPsychoSocial', 'organizational'""" ;
-    sc:name "ComSA)program" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31664899" .
-
-<https://bio.tools/CommCare> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3063,
-        edam:topic_3390,
-        edam:topic_3810 ;
-    sc:citation <https://doi.org/10.3390/NU11122889>,
-        "pubmed:31783608" ;
-    sc:description """The Use of Tablet-Based Multiple-Pass 24-Hour Dietary Recall Application (MP24Diet) to Collect Dietary Intake of Children under Two Years Old in the Prospective Cohort Study in Indonesia.
-
-Please sign in below to continue.
-
-Learn more about how CommCare HQ can be your mobile solution for your frontline workforce.
-
-No account? Sign up today, it's free!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'MP24Diet', 'multiple-pass 24-h dietary', 'dietary', 'Indonesia'""" ;
-    sc:name "CommCare" ;
-    sc:url "http://www.commcarehq.org" .
-
-<https://bio.tools/CommonMind> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0625,
-        edam:topic_3170,
-        edam:topic_3173 ;
-    sc:citation <https://doi.org/10.1038/S41597-019-0183-6>,
-        "pmcid:PMC6760149",
-        "pubmed:31551426" ;
-    sc:description "> CORRECT NAME OF TOOL COULD ALSO BE 'CommonMind Consortium' | CommonMind Consortium provides transcriptomic and epigenomic data for Schizophrenia and Bipolar Disorder | CommonMind Consortium Knowledge Portal | Synapse is a collaborative compute space that allows scientists to share and analyze data together | The CommonMind Consortium is a public-private partnership bringing together area knowledge, large scale and well-curated brain sample collections, data management and analysis expertise | Any data created will be deleted | This site uses Cookies to enhance your experience and to analyze our traffic" ;
-    sc:featureList edam:operation_3192,
-        edam:operation_3196,
-        edam:operation_3431 ;
-    sc:name "CommonMind" ;
-    sc:url "http://CommonMind.org" .
-
 <https://bio.tools/Comorbidity4j> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3063,
         edam:topic_3068,
@@ -16757,7 +13307,7 @@ No account? Sign up today, it's free!.
     sc:url "http://comorbidity.eu/comorbidity4web/" .
 
 <https://bio.tools/CompNet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3372 ;
@@ -16776,7 +13326,7 @@ Interaction networks are a convenient way of representing the complex nature of
     sc:url "https://web.rniapps.net/compnet/" .
 
 <https://bio.tools/CompScore> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2275,
         edam:topic_3336 ;
@@ -16791,18 +13341,18 @@ CompScore is a web application for boosting structure-based virtual screening pe
 
 <https://bio.tools/Compare_Two_Lists> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2872" ;
-            sc:name "ID list" ;
-            sc:sameAs "http://edamontology.org/data_2872" ],
+            sc:additionalType "http://edamontology.org/data_2872" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "ID list" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2872" ;
-            sc:name "ID list" ;
-            sc:sameAs "http://edamontology.org/data_2872" ] ;
+            sc:additionalType "http://edamontology.org/data_2872" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "ID list" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3307 ;
     sc:author <https://orcid.org/0000-0001-6358-8380> ;
@@ -16813,7 +13363,7 @@ CompScore is a web application for boosting structure-based virtual screening pe
     sc:url "https://rnact.crg.eu/compare" .
 
 <https://bio.tools/CompleXChange> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0749,
@@ -16834,40 +13384,28 @@ CompScore is a web application for boosting structure-based virtual screening pe
     sc:softwareHelp <https://sourceforge.net/projects/complexchange/files/CompleXChange_1.01.zip/download> ;
     sc:url "https://sourceforge.net/projects/complexchange/" .
 
-<https://bio.tools/Complex> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0602,
-        edam:topic_0605,
-        edam:topic_3300 ;
-    sc:citation <https://doi.org/10.1101/744656> ;
-    sc:description "> MEDIUM CONFIDENCE! | Aided Decision-Making for the Study of Protein Complexes | Abstract Proteins are the chief effectors of cell biology and their functions are typically carried out in the context of multi-protein assemblies; large collections of such interacting protein assemblies are often referred to as interactomes. Knowing the constituents of protein complexes is therefore important for investigating their molecular biology. Many experimental methods are capable of producing data of use for detecting and inferring the existence of physiological protein complexes. Each method has associated pros and cons, affecting the potential quality and utility of the data. Numerous informatic resources exist for the curation, integration, retrieval, and processing of protein interactions data. While each resource may possess different merits, none are definitive and few are wieldy, potentially limiting their effective use by non-experts" ;
-    sc:featureList edam:operation_2492,
-        edam:operation_3439,
-        edam:operation_3901 ;
-    sc:name "Complex" ;
-    sc:url "https://github.com/moghbaie/ComplexPlus" .
-
 <https://bio.tools/ComplexBrowser> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0906" ;
-            sc:name "Protein interaction data" ;
-            sc:sameAs "http://edamontology.org/data_0906" ],
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Expression data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ] ;
+            sc:additionalType "http://edamontology.org/data_0906" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Protein interaction data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ],
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3603" ;
+            sc:name "Plot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ],
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_3508" ;
+            sc:name "Report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0896" ;
-            sc:name "Protein report" ;
-            sc:sameAs "http://edamontology.org/data_0896" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0896" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Protein report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0121,
@@ -16902,22 +13440,22 @@ CompScore is a web application for boosting structure-based virtual screening pe
 
 <https://bio.tools/Complex_Portal> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2526" ;
-            sc:name "Text data" ;
-            sc:sameAs "http://edamontology.org/data_2526" ],
+            sc:additionalType "http://edamontology.org/data_2526" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Text data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0842" ;
-            sc:name "Identifier" ;
-            sc:sameAs "http://edamontology.org/data_0842" ] ;
+            sc:additionalType "http://edamontology.org/data_0842" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Identifier" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0906" ;
-            sc:name "Protein interaction data" ;
-            sc:sameAs "http://edamontology.org/data_0906" ],
+            sc:additionalType "http://edamontology.org/data_0906" ;
+            sc:encodingFormat "http://edamontology.org/format_3464" ;
+            sc:name "Protein interaction data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0906" ;
-            sc:name "Protein interaction data" ;
-            sc:sameAs "http://edamontology.org/data_0906" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0906" ;
+            sc:encodingFormat "http://edamontology.org/format_3158" ;
+            sc:name "Protein interaction data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application",
         "Web service" ;
@@ -16936,7 +13474,7 @@ CompScore is a web application for boosting structure-based virtual screening pe
     sc:url "https://www.ebi.ac.uk/complexportal/" .
 
 <https://bio.tools/CompositeDriver> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_2640,
@@ -16959,23 +13497,8 @@ CompScore is a web application for boosting structure-based virtual screening pe
     sc:url "https://github.com/khuranalab/CompositeDriver" ;
     biotools:primaryContact <https://orcid.org/0000-0002-3594-6678> .
 
-<https://bio.tools/Computer-assisted_craniometric_evaluation_diagnosis_follow-up_craniofacial_asymmetries> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3303,
-        edam:topic_3318,
-        edam:topic_3384 ;
-    sc:citation <https://doi.org/10.1101/19007054> ;
-    sc:description """Computer-assisted craniometric evaluation for diagnosis and follow-up of craniofacial asymmetries.
-
-Purpose: The current assessment of patients with craniofacial asymmetries is accomplished by physical examination, anamnesis and radiological imaging. We propose a semi-automated, computer-assisted craniofacial evaluation (SymMetric v 1.0) based on orthogonal photography of the patient's head in 3 positions. The system is simple, low-cost, no-radiation or special resources needed. Although it does not substitute CT in cases of doubt between craniosynostosis and positional plagiocephaly, multiple numeric evaluations indicate regional deformities and severity of the asymmetry, which can help in the clinical decision of indicating or not the orthosis in positional deformities, determining treatment duration or evaluating surgical outcomes after correction.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'deformities', 'orthosis', 'asymmetries', 'craniofacial'""" ;
-    sc:name "Computer-assisted craniometric evaluation diagnosis follow-up craniofacial asymmetries" ;
-    sc:url "https://doi.org/10.1101/19007054" .
-
 <https://bio.tools/ConTEdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0610,
@@ -17001,7 +13524,7 @@ Purpose: The current assessment of patients with craniofacial asymmetries is acc
         "Junhui Wang" .
 
 <https://bio.tools/Conbase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0625,
@@ -17024,75 +13547,8 @@ Purpose: The current assessment of patients with craniofacial asymmetries is acc
     biotools:primaryContact "Ezeddin Al Hakim",
         "Marie Kindblom" .
 
-<https://bio.tools/Concise_Guide_PHARMACOLOGY_2019_20> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0154,
-        edam:topic_0202,
-        edam:topic_0821,
-        edam:topic_2830,
-        edam:topic_3407 ;
-    sc:citation <https://doi.org/10.1111/BPH.14750>,
-        <https://doi.org/10.1111/BPH.14751>,
-        <https://doi.org/10.1111/BPH.14752>,
-        <https://doi.org/10.1111/BPH.14753>,
-        "pmcid:PMC6844575",
-        "pmcid:PMC6844576",
-        "pmcid:PMC6844577",
-        "pmcid:PMC6844579",
-        "pubmed:31710713",
-        "pubmed:31710714",
-        "pubmed:31710716",
-        "pubmed:31710718" ;
-    sc:description """THE CONCISE GUIDE TO PHARMACOLOGY 2019/20.
-
-Nitric oxide synthase, endothelial.
-
-Aromatic-L-amino-acid decarboxylase.
-
-Amine oxidase [flavin-containing] A.
-
-Amine oxidase [flavin-containing] B.
-
-cAMP-specific 3',5'-cyclic phosphodiesterase 4A.
-
-Liver carboxylesterase 1 precursor.
-
-Prostaglandin G/H synthase 1 precursor.
-
-Arachidonate 5-lipoxygenase-activating protein.
-
-Interleukin-4 receptor subunit alpha precursor.
-
-Interleukin-3 receptor subunit alpha precursor.
-
-Ciliary neurotrophic factor receptor subunit alpha precursor.
-
-Interleukin-12 subunit alpha precursor.
-
-Interleukin-12 subunit beta precursor.
-
-Interleukin-1 receptor type 2 precursor.
-
-Atrial natriuretic peptide receptor 2 precursor.
-
-Heat-stable enterotoxin receptor precursor.
-
-C-type natriuretic peptide precursor.
-
-Receptor tyrosine-protein kinase erbB-3 precursor.
-
-||| COMMON LINK WITH (PUB. & NAME DIFFERENT) bio.tools/uniprotkb (UNIPROT.ORG/uniprot).
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'PHARMACOLOGY'""" ;
-    sc:featureList edam:operation_0269,
-        edam:operation_0303,
-        edam:operation_0337,
-        edam:operation_0482,
-        edam:operation_2995 ;
-    sc:name "Concise Guide PHARMACOLOGY 2019 20" ;
-    sc:url "http://www.uniprot.org/uniprot/P28329" .
-
 <https://bio.tools/ConnectedReads> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0769,
@@ -17103,23 +13559,8 @@ Receptor tyrosine-protein kinase erbB-3 precursor.
     sc:name "ConnectedReads" ;
     sc:url "https://github.com/atgenomix/connectedreads" .
 
-<https://bio.tools/ConsExpo> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0780,
-        edam:topic_3068,
-        edam:topic_3315 ;
-    sc:citation <https://doi.org/10.13075/MP.5893.00880>,
-        "pubmed:31603436" ;
-    sc:description """[Assessment of consumer exposure to chemical agents on the example of the ConsExpo model].
-
-Contact the administrator.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'ConsExpo Web'""" ;
-    sc:featureList edam:operation_2426 ;
-    sc:name "ConsExpo" ;
-    sc:url "http://consexpoweb.nl" .
-
 <https://bio.tools/Conservation_Archive> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0610,
@@ -17133,30 +13574,30 @@ Contact the administrator.
 
 <https://bio.tools/Conterminator> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1179" ;
-            sc:name "NCBI taxonomy ID" ;
-            sc:sameAs "http://edamontology.org/data_1179" ],
+            sc:additionalType "http://edamontology.org/data_1179" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "NCBI taxonomy ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1233" ;
-            sc:name "Sequence set (protein)" ;
-            sc:sameAs "http://edamontology.org/data_1233" ],
+            sc:additionalType "http://edamontology.org/data_1233" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence set (protein)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1234" ;
-            sc:name "Sequence set (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1234" ],
+            sc:additionalType "http://edamontology.org/data_1234" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence set (nucleic acid)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1179" ;
-            sc:name "NCBI taxonomy ID" ;
-            sc:sameAs "http://edamontology.org/data_1179" ] ;
+            sc:additionalType "http://edamontology.org/data_1179" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "NCBI taxonomy ID" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2042" ;
-            sc:name "Evidence" ;
-            sc:sameAs "http://edamontology.org/data_2042" ],
+            sc:additionalType "http://edamontology.org/data_2042" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Evidence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2042" ;
-            sc:name "Evidence" ;
-            sc:sameAs "http://edamontology.org/data_2042" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2042" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Evidence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:author <http://orcid.org/0000-0001-8781-9753> ;
@@ -17176,7 +13617,7 @@ Contact the administrator.
     biotools:primaryContact <http://orcid.org/0000-0001-8781-9753> .
 
 <https://bio.tools/Context-explorer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0203,
@@ -17198,7 +13639,7 @@ Contact the administrator.
     biotools:primaryContact "Joel Ostblom" .
 
 <https://bio.tools/ContinuousFlex> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0176,
@@ -17218,7 +13659,7 @@ This plugin provides HEMNMA and StructMap protocols and is frequently updated.""
     sc:url "https://pypi.org/project/scipion-em-continuousflex" .
 
 <https://bio.tools/ContraDRG> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0176,
@@ -17236,29 +13677,8 @@ In recent years, machine learning techniques have been widely used in biomedical
     sc:name "ContraDRG" ;
     sc:url "https://cdrg.mathematik.uni-marburg.de/" .
 
-<https://bio.tools/Contrasting> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0154,
-        edam:topic_2229,
-        edam:topic_2640,
-        edam:topic_3305,
-        edam:topic_3315 ;
-    sc:citation <https://doi.org/10.1371/JOURNAL.PCBI.1007493>,
-        "pmcid:PMC6886869",
-        "pubmed:31738747" ;
-    sc:description """Contrasting the impact of cytotoxic and cytostatic drug therapies on tumour progression.
-
-contrasting-cytotoxic-cytostatic.
-
-Source codes for 'Contrasting the impact of cytotoxic and cytostatic drug therapies on tumour progression'.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'cytostatic', 'tumour', 'birth', 'therapy'""" ;
-    sc:featureList edam:operation_2426,
-        edam:operation_3503 ;
-    sc:name "Contrasting" ;
-    sc:url "https://github.com/mustonen-group/contrasting-cytotoxic-cytostatic" .
-
 <https://bio.tools/ConvPath> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_2229,
@@ -17277,30 +13697,8 @@ BACKGROUND:The spatial distributions of different types of cells could reveal a
     sc:softwareHelp <https://qbrc.swmed.edu/projects/cnn/user_manual.php> ;
     sc:url "https://qbrc.swmed.edu/projects/cnn/" .
 
-<https://bio.tools/Cool_Farm_Tool_Water> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3050,
-        edam:topic_3489,
-        edam:topic_3810 ;
-    sc:citation <https://doi.org/10.1016/J.JCLEPRO.2018.09.160>,
-        "pmcid:PMC6771653",
-        "pubmed:31598037" ;
-    sc:description """A global on-line tool to assess water use in crop production.
-
-An online greenhouse gas, water, and biodiversity calculator.
-
-COOL FARM TOOL AN ONLINE GREENHOUSE GAS, WATER, AND BIODIVERSITY CALCULATOR FOR FARMERS FREE FOR FARMERS THE COOL FARM ALLIANCE AN INDUSTRY PLATFORM FOR SUSTAINABLE AGRICULTURE METRIC DEVELOPMENT AND USE LEARN MORE News & Resources STAY UP TO DATE WITH OUR CASE STUDIES, RESOURCES, NEWS & BLOGS READ MORE.
-
-The Cool Farm Alliance is Hiring.
-
-The Cool Farm Alliance is looking to contract for two new roles. Due to the growth of the Alliance, we are looking for two new project management roles, one to support the Development & Operations Committee and one to lead the support to..""" ;
-    sc:featureList edam:operation_0387,
-        edam:operation_3435,
-        edam:operation_3436 ;
-    sc:name "Cool Farm Tool Water" ;
-    sc:url "https://coolfarmtool.org" .
-
 <https://bio.tools/CorDiff> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_2269,
         edam:topic_3678 ;
@@ -17318,7 +13716,7 @@ We describe four different summary statistics, to ensure power and flexibility u
     sc:url "https://cran.r-project.org/web/packages/CorDiff/index.html" .
 
 <https://bio.tools/CorEx> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0203,
@@ -17339,7 +13737,7 @@ This website began as an extension of work applying the CorEx machine learning a
     sc:url "http://corex.isi.edu" .
 
 <https://bio.tools/CoralTBase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_3170,
@@ -17363,7 +13761,7 @@ This website began as an extension of work applying the CorEx machine learning a
         "Jianliang Xu" .
 
 <https://bio.tools/CoreSlicer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API",
         "Web application" ;
     sc:applicationSubCategory edam:topic_3384,
@@ -17385,18 +13783,8 @@ This website began as an extension of work applying the CorEx machine learning a
     sc:url "https://coreslicer.com/" ;
     biotools:primaryContact "Louis Mullie" .
 
-<https://bio.tools/Corvus> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0593,
-        edam:topic_0769,
-        edam:topic_3318 ;
-    sc:citation <https://doi.org/10.1107/S1600577519007495>,
-        "pubmed:31490161" ;
-    sc:description "> MEDIUM CONFIDENCE! | > HOMEPAGE MISSING! | a framework for interfacing scientific software for spectroscopic and materials science applications | Corvus, a Python-based package designed for managing workflows of physical simulations that utilize multiple scientific software packages, is presented. Corvus can be run as an executable script with an input file and automatically generated or custom workflows, or interactively, in order to build custom workflows with a set of Corvus-specific tools. Several prototypical examples are presented that link density functional, vibrational and X-ray spectroscopy software packages and are of interest to the synchrotron community. These examples highlight the simplification of complex spectroscopy calculations that were previously limited to expert users, and demonstrate the flexibility of the Corvus infrastructure to tackle more general problems in other research areas" ;
-    sc:name "Corvus" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31490161" .
-
 <https://bio.tools/CottonGen> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Bioinformatics portal" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0102,
@@ -17418,7 +13806,7 @@ This website began as an extension of work applying the CorEx machine learning a
     sc:url "http://cottongen.org" .
 
 <https://bio.tools/CoverageTool> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0780,
@@ -17435,26 +13823,21 @@ This website began as an extension of work applying the CorEx machine learning a
 
 <https://bio.tools/CowpeaMine> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2353" ;
-            sc:name "Ontology data" ;
-            sc:sameAs "http://edamontology.org/data_2353" ],
+            sc:additionalType "http://edamontology.org/data_2353" ;
+            sc:name "Ontology data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ] ;
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:name "Sequence features" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3753" ;
-            sc:name "Over-representation data" ;
-            sc:sameAs "http://edamontology.org/data_3753" ],
+            sc:additionalType "http://edamontology.org/data_3786" ;
+            sc:name "Query script" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ],
+            sc:additionalType "http://edamontology.org/data_3753" ;
+            sc:name "Over-representation data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3786" ;
-            sc:name "Query script" ;
-            sc:sameAs "http://edamontology.org/data_3786" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:name "Sequence features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application",
         "Web service" ;
@@ -17478,7 +13861,7 @@ This website began as an extension of work applying the CorEx machine learning a
     sc:url "https://mines.legumeinfo.org/cowpeamine" .
 
 <https://bio.tools/Cox-PASNet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2640,
         edam:topic_3360,
@@ -17499,7 +13882,7 @@ Cox-PASNet is a pathway-based sparse deep neural network for survival analysis""
     sc:url "https://github.com/DataX-JieHao/Cox-PASNet" .
 
 <https://bio.tools/CpGtools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3295,
@@ -17520,7 +13903,7 @@ $ pip3 install git+https://github.com/liguowang/cpgtools.git""" ;
     sc:url "https://github.com/liguowang/cpgtools" .
 
 <https://bio.tools/CpnClassiPhyR> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0780,
         edam:topic_2885,
@@ -17534,26 +13917,8 @@ $ pip3 install git+https://github.com/liguowang/cpgtools.git""" ;
     sc:name "CpnClassiPhyR" ;
     sc:url "http://cpnclassiphyr.ca" .
 
-<https://bio.tools/CrIMMix> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0121,
-        edam:topic_0625,
-        edam:topic_2269,
-        edam:topic_3168 ;
-    sc:citation <https://doi.org/10.1093/BIB/BBZ138>,
-        "pubmed:31792509" ;
-    sc:description """Clustering and variable selection evaluation of 13 unsupervised methods for multi-omics data integration.
-
-Simulation of heterogeneous datasets to compare unsupervised integrative methods.
-
-Morgane Pierre-Jean, Jean-François Deleuze, Edith Le Floch, Florence Mauger, Clustering and variable selection evaluation of 13 unsupervised methods for multi-omics data integration, Briefings in Bioinformatics, , bbz138, https://doi.org/10.1093/bib/bbz138""" ;
-    sc:featureList edam:operation_3432,
-        edam:operation_3435,
-        edam:operation_3891 ;
-    sc:name "CrIMMix" ;
-    sc:url "https://github.com/CNRGH/crimmix" .
-
 <https://bio.tools/Cram-JS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3673,
         edam:topic_3676 ;
@@ -17573,7 +13938,7 @@ Morgane Pierre-Jean, Jean-François Deleuze, Edith Le Floch, Florence Mauger, Cl
     biotools:primaryContact "Robert Buels" .
 
 <https://bio.tools/Crisflash> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btz019> ;
@@ -17587,57 +13952,8 @@ Morgane Pierre-Jean, Jean-François Deleuze, Edith Le Floch, Florence Mauger, Cl
     sc:url "https://github.com/crisflash/crisflash" ;
     biotools:primaryContact "Margus Lukk" .
 
-<https://bio.tools/CroCo_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0154,
-        edam:topic_3520 ;
-    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTZ732>,
-        "pubmed:31562766" ;
-    sc:description "> NAME EQUAL TO (PUB. DIFFERENT) bio.tools/croco | > CORRECT NAME OF TOOL COULD ALSO BE 'CroCo cross-link converter' | a user-centred tool to convert results from crosslinking mass spectrometry experiments | Convert data formats from chemical cross-linking mass spectrometry (XL-MS) | The CroCo cross-link converter — CroCo documentation | CroCo converts multiple data format from cross-linking mass spectrometry software tools to xTable format (in csv format) | The CroCo cross-link converter ¶ | CroCo converts multiple data format from cross-linking mass spectrometry software tools to xTable format (in csv format). It is distributed as graphical programme to be run from an executable and as a Python module to be integrated into workflows" ;
-    sc:featureList edam:operation_1812,
-        edam:operation_3631,
-        edam:operation_3694 ;
-    sc:license "GPL-3.0" ;
-    sc:name "CroCo_autogenerated" ;
-    sc:url "https://cschmidtlab.github.io/CroCo" .
-
-<https://bio.tools/CroP_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0602 ;
-    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTZ688>,
-        "pubmed:31504214" ;
-    sc:description "> MEDIUM CONFIDENCE! | > NAME (CroP) SIMILAR TO (PUB. DIFFERENT) bio.tools/crop (crop) | > CORRECT NAME OF TOOL COULD ALSO BE 'cdv', 'AVAILABILITY:CroP', 'SUMMARY:CroP' | Coordinated Panel Visualization for Biological Networks Analysis | CroP – Coordinated Panels Visualization | The Computational Design and Visualization Lab focuses on multidisciplinary research bringing together Computer Science, Graphic Design and New Media Art | CroP is a visualization tool aimed at highlighting patterns of data in networks integrated with temporal data and analyzing their behaviors over time through dynamic visualization models in a coordinated multiple views layout" ;
-    sc:featureList edam:operation_1812,
-        edam:operation_2497 ;
-    sc:name "CroP_autogenerated" ;
-    sc:url "https://cdv.dei.uc.pt/crop/" .
-
-<https://bio.tools/Cronobacter> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0084,
-        edam:topic_0154,
-        edam:topic_0632,
-        edam:topic_3390,
-        edam:topic_3518 ;
-    sc:citation <https://doi.org/10.3390/MICROORGANISMS7110554>,
-        "pmcid:PMC6920972",
-        "pubmed:31726673" ;
-    sc:description """Prevalence, Distribution, and Phylogeny of Type Two Toxin-Antitoxin Genes Possessed by Cronobacter Species where C. sakazakii Homologs Follow Sequence Type Lineages.
-
-Multilocus sequence typing (MLST) databases and software.
-
-This site uses two linked databases powered by the BIGSdb genomics platform. The sequence definition database contains allele sequence and MLST profile definitions whereas the isolate database contains provenance and epidemiological information. Further details about BIGSdb can be found in Jolley & Maiden 2010, BMC Bioinformatics 11:595.
-
-Recent publications using MLST in Cronobacter research.
-
-Primers and protocol used for amplification and sequencing [Note: new primer recommendations].
-
-This publication made use of the Cronobacter Multi Locus Sequence Typing website (https: pubmlst.org cronobacter ) sited at the University of Oxford (Jolley et al""" ;
-    sc:featureList edam:operation_0308,
-        edam:operation_3431,
-        edam:operation_3840 ;
-    sc:name "Cronobacter" ;
-    sc:url "http://www.pubmlst.org/cronobacter" .
-
 <https://bio.tools/CropCircDB> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_3170,
@@ -17659,7 +13975,7 @@ This publication made use of the Cronobacter Multi Locus Sequence Typing website
         "Hongwei Zhao" .
 
 <https://bio.tools/Cropper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3517 ;
@@ -17679,7 +13995,7 @@ This publication made use of the Cronobacter Multi Locus Sequence Typing website
     biotools:primaryContact "T. Haller" .
 
 <https://bio.tools/Crossmapper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3174,
@@ -17696,7 +14012,7 @@ This publication made use of the Cronobacter Multi Locus Sequence Typing website
     sc:url "https://github.com/Gabaldonlab/crossmapper" .
 
 <https://bio.tools/CrowdGO> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0610 ;
@@ -17706,17 +14022,8 @@ This publication made use of the Cronobacter Multi Locus Sequence Typing website
     sc:name "CrowdGO" ;
     sc:url "https://gitlab.com/mreijnders/CrowdGO" .
 
-<https://bio.tools/CrowdWater_game> a sc:SoftwareApplication ;
-    sc:citation <https://doi.org/10.1371/JOURNAL.PONE.0222579>,
-        "pmcid:PMC6763123",
-        "pubmed:31557184" ;
-    sc:description "A playful way to improve the accuracy of crowdsourced water level class data | If the game is not displayed correctly, please click here" ;
-    sc:featureList edam:operation_2428 ;
-    sc:name "CrowdWater game" ;
-    sc:url "https://crowdwater.ch/en/crowdwater-game/" .
-
 <https://bio.tools/Crowdbreaks> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0218,
         edam:topic_3305,
@@ -17739,7 +14046,7 @@ This publication made use of the Cronobacter Multi Locus Sequence Typing website
         "Martin Müller" .
 
 <https://bio.tools/Cryfa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3263 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/bty645> ;
@@ -17755,7 +14062,7 @@ This publication made use of the Cronobacter Multi Locus Sequence Typing website
     biotools:primaryContact "Morteza Hosseini" .
 
 <https://bio.tools/CryoFLARE> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3077,
         edam:topic_3382 ;
@@ -17780,7 +14087,7 @@ Import data from EPU or SerialEM""" ;
     sc:url "http://www.cryoflare.org" .
 
 <https://bio.tools/CrystFEL> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0611,
         edam:topic_2828,
@@ -17803,7 +14110,7 @@ Import data from EPU or SerialEM""" ;
     biotools:primaryContact "Thomas White" .
 
 <https://bio.tools/CrystaLattE> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3314,
         edam:topic_3474 ;
@@ -17823,19 +14130,8 @@ CyrstaLattE is a software that automates the computation of crystal lattice ener
     sc:name "CrystaLattE" ;
     sc:url "https://github.com/carlosborca/CrystaLattE" .
 
-<https://bio.tools/Ctrl-ImpAct> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3304,
-        edam:topic_3855 ;
-    sc:citation <https://doi.org/10.5334/PB.494>,
-        "pmcid:PMC6707000",
-        "pubmed:31497307" ;
-    sc:description "> MEDIUM CONFIDENCE! | > HOMEPAGE MISSING! | > CORRECT NAME OF TOOL COULD ALSO BE 'Open Up' | the Mission Statement of the Control of Impulsive Action (Ctrl-ImpAct) Lab on Open Science | The present paper is the mission statement of the Control of Impulsive Action (Ctrl-ImpAct) Lab regarding Open Science. As early-career researchers (ECRs) in the lab, we first state our personal motivation to conduct research based on the principles of Open Science. We then describe how we incorporate four specific Open Science practices (i.e., Open Methodology, Open Data, Open Source, and Open Access) into our scientific workflow. In more detail, we explain how Open Science practices are embedded into the so-called 'co-pilot' system in our lab. The 'co-pilot' researcher is involved in all tasks of the 'pilot' researcher, that is designing a study, double-checking experimental and data analysis scripts, as well as writing the manuscript" ;
-    sc:featureList edam:operation_3431 ;
-    sc:name "Ctrl-ImpAct" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31497307" .
-
 <https://bio.tools/Cumulus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_2229,
@@ -17865,7 +14161,7 @@ Free document hosting provided by Read the Docs""" ;
     sc:url "https://github.com/klarman-cell-observatory/cumulus" .
 
 <https://bio.tools/Curatopes_Melanoma> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0804,
         edam:topic_3379,
@@ -17878,22 +14174,8 @@ Free document hosting provided by Read the Docs""" ;
     sc:softwareHelp <https://www.curatopes.com/melanoma/documentation.html> ;
     sc:url "https://www.curatopes.com" .
 
-<https://bio.tools/Cut-C> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0204,
-        edam:topic_0749,
-        edam:topic_3656 ;
-    sc:citation <https://doi.org/10.1186/S12864-019-5989-2>,
-        "pmcid:PMC6664727",
-        "pubmed:31357933" ;
-    sc:description "> MEDIUM CONFIDENCE! | > HOMEPAGE MISSING! | cleavage under tethered nuclease for conformational capture | BACKGROUND:Deciphering the 3D structure of the genome is essential for elucidating the regulatory mechanisms of gene expression in detail. Existing methods, such as chromosome conformation capture (3C) and Hi-C have enabled the identification of novel aspects of chromatin structure. Further identification of protein-centric chromatin conformation is enabled by coupling the Hi-C procedure with a conventional chromatin immunoprecipitation assay. However, these methods are time-consuming and require independent methods for validation. RESULTS:To simultaneously identify protein-centric chromatin conformation and target protein localization, we have developed Cut-C, a method that combines antibody-mediated cleavage by tethered nuclease with chromosome conformation capture to identify chromatin interactions mediated by a protein of interest" ;
-    sc:featureList edam:operation_3192,
-        edam:operation_3222,
-        edam:operation_3501 ;
-    sc:name "Cut-C" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31357933" .
-
 <https://bio.tools/CutpointsOEHR> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3305,
         edam:topic_3315 ;
@@ -17915,14 +14197,14 @@ Free document hosting provided by Read the Docs""" ;
 
 <https://bio.tools/CyGenexpi> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3112" ;
-            sc:name "Gene expression matrix" ;
-            sc:sameAs "http://edamontology.org/data_3112" ] ;
+            sc:additionalType "http://edamontology.org/data_3112" ;
+            sc:encodingFormat "http://edamontology.org/format_3751" ;
+            sc:name "Gene expression matrix" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2984" ;
-            sc:name "Pathway or network report" ;
-            sc:sameAs "http://edamontology.org/data_2984" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2984" ;
+            sc:encodingFormat "http://edamontology.org/format_3751" ;
+            sc:name "Pathway or network report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0204 ;
     sc:author <http://orcid.org/0000-0002-8886-7797> ;
@@ -17943,7 +14225,7 @@ Free document hosting provided by Read the Docs""" ;
     biotools:primaryContact <http://orcid.org/0000-0002-8886-7797> .
 
 <https://bio.tools/CyTOF_workflow> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0769,
@@ -17966,7 +14248,7 @@ Free document hosting provided by Read the Docs""" ;
     biotools:primaryContact <https://orcid.org/0000-0002-3048-5518> .
 
 <https://bio.tools/CyTargetLinker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0602,
         edam:topic_3474 ;
@@ -17985,22 +14267,8 @@ Free document hosting provided by Read the Docs""" ;
         <https://cytargetlinker.github.io/pages/docs> ;
     sc:url "https://cytargetlinker.github.io/" .
 
-<https://bio.tools/CyTargetLinker_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0204,
-        edam:topic_0602,
-        edam:topic_3474 ;
-    sc:citation <https://doi.org/10.12688/F1000RESEARCH.14613.2>,
-        "pmcid:PMC6707396",
-        "pubmed:31489175" ;
-    sc:description "> CORRECT NAME OF TOOL COULD ALSO BE 'CyTargetLinker app update' | A flexible solution for network extension in Cytoscape | **Now released with Cytoscape automation feature** The CyTargetLinker app extends biological networks with regulatory interactions, for example miRNA-target, TF-target or drug-target interactions | CyTargetLinker website and tutorials | CyTargetLinker - Extend your biological networks in Cytoscape" ;
-    sc:featureList edam:operation_0277,
-        edam:operation_1781,
-        edam:operation_3439 ;
-    sc:name "CyTargetLinker_autogenerated" ;
-    sc:url "https://cytargetlinker.github.io/" .
-
 <https://bio.tools/CycloNovo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3172,
@@ -18020,7 +14288,7 @@ CycloNovo is a new algorithm that identifies spectra generated from cyclopeptide
     sc:url "https://github.com/bbehsaz/cyclonovo" .
 
 <https://bio.tools/Cyclum> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_2269,
@@ -18039,7 +14307,7 @@ CycloNovo is a new algorithm that identifies spectra generated from cyclopeptide
     sc:url "https://github.com/KChen-lab/cyclum" .
 
 <https://bio.tools/CytoConverter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3168,
@@ -18054,7 +14322,7 @@ CycloNovo is a new algorithm that identifies spectra generated from cyclopeptide
     sc:url "https://jxw773.shinyapps.io/Cytogenetic__software/" .
 
 <https://bio.tools/CytoGPS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0654,
@@ -18075,7 +14343,7 @@ CycloNovo is a new algorithm that identifies spectra generated from cyclopeptide
     biotools:primaryContact "Institute for Informatics, Washington University School of Medicine" .
 
 <https://bio.tools/CytoNorm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3934 ;
     sc:citation <https://doi.org/10.1002/CYTO.A.23904>,
@@ -18093,7 +14361,7 @@ CycloNovo is a new algorithm that identifies spectra generated from cyclopeptide
     sc:url "http://www.github.com/saeyslab/CytoNorm" .
 
 <https://bio.tools/CytoPacq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3382 ;
@@ -18111,7 +14379,7 @@ CycloNovo is a new algorithm that identifies spectra generated from cyclopeptide
     sc:url "https://cbia.fi.muni.cz/simulator" .
 
 <https://bio.tools/CytoTRACE> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3308,
@@ -18132,7 +14400,7 @@ CycloNovo is a new algorithm that identifies spectra generated from cyclopeptide
     sc:url "https://cytotrace.stanford.edu" .
 
 <https://bio.tools/Cytokit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_2830,
         edam:topic_3360,
@@ -18148,7 +14416,7 @@ CycloNovo is a new algorithm that identifies spectra generated from cyclopeptide
     sc:url "https://github.com/hammerlab/cytokit" .
 
 <https://bio.tools/Cytomine> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3382 ;
@@ -18168,7 +14436,7 @@ to support next-generation digital pathology bridged to molecular investigations
     sc:url "https://cytomine.be/" .
 
 <https://bio.tools/Cytoscape_Automation> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Suite",
         "Workflow" ;
@@ -18186,39 +14454,8 @@ to support next-generation digital pathology bridged to molecular investigations
     sc:name "Cytoscape Automation" ;
     sc:url "http://automation.cytoscape.org" .
 
-<https://bio.tools/Cytoscape_BioGateway_App> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0089,
-        edam:topic_0121,
-        edam:topic_0128,
-        edam:topic_0749,
-        edam:topic_3489 ;
-    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTZ835>,
-        "pubmed:31710663" ;
-    sc:description """explorative network building from the BioGateway triple store.
-
-BioGateway – A Semantic Systems Biology Resource.
-
-A Semantic Systems Biology Database.
-
-BioGateway consists of a graph-based database built on Semantic Web principles, a SPARQL endpoint allowing users to query it, and a Cytoscape app which integrates the query functionality directly into your network building workflow.
-
-To install the App, use the App Manager in Cytoscape (version 3.7.0 or later), click “Install from File…”, and select the downloaded file.
-
-BioGateway is an initiative that enables a Semantic Systems Biology approach.
-
-BioGateway is an RDF Graph Database or ‘triple store’, and can be searched by building a query consisting of a set of questions that together specify what you are looking for.
-
-||| COMMON LINK WITH (PUB. & NAME DIFFERENT) bio.tools/BioGateway (BIOGATEWAY.EU ; BIOGATEWAY.EU/app).
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'BioGateway' (bio.tools/BioGateway), 'BioGateway RDF', 'BioGateway App'""" ;
-    sc:featureList edam:operation_0224,
-        edam:operation_0306,
-        edam:operation_3083 ;
-    sc:name "Cytoscape BioGateway App" ;
-    sc:url "http://www.biogateway.eu" .
-
 <https://bio.tools/D-lnc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
@@ -18235,14 +14472,14 @@ BioGateway is an RDF Graph Database or ‘triple store’, and can be searched b
 
 <https://bio.tools/D3E> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3112" ;
-            sc:name "Gene expression matrix" ;
-            sc:sameAs "http://edamontology.org/data_3112" ] ;
+            sc:additionalType "http://edamontology.org/data_3112" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Gene expression matrix" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_3308 ;
@@ -18260,7 +14497,7 @@ BioGateway is an RDF Graph Database or ‘triple store’, and can be searched b
     sc:url "https://www.sanger.ac.uk/science/tools/discrete-distributional-differential-expression-d3e" .
 
 <https://bio.tools/D3GRN> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
         edam:topic_2259,
@@ -18281,51 +14518,8 @@ D3GRN is a Data Driven Dynamic network construction method to infer Gene Regulat
     sc:name "D3GRN" ;
     sc:url "https://github.com/chenxofhit/D3GRN" .
 
-<https://bio.tools/DADA2_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0625,
-        edam:topic_0659,
-        edam:topic_3168,
-        edam:topic_3174,
-        edam:topic_3697 ;
-    sc:citation <https://doi.org/10.3791/59980>,
-        "pubmed:31680682" ;
-    sc:description """Microbiota Analysis Using Two-step PCR and Next-generation 16S rRNA Gene Sequencing.
-
-Here we walk through version 1.12 of the DADA2 pipeline on a small multi-sample dataset. Our starting point is a set of Illumina-sequenced paired-end fastq files that have been split (or “demultiplexed”) by sample and from which the barcodes/adapters have already been removed. The end product is an amplicon sequence variant (ASV) table, a higher-resolution analogue of the traditional OTU table, which records the number of times each exact amplicon sequence variant was observed in each sample. We also assign taxonomy to the output sequences, and demonstrate how the data can be imported into the popular phyloseq R package for the analysis of microbiome data.
-
-||| NAME (DADA2) SIMILAR TO (PUB. DIFFERENT) bio.tools/dada2 (dada2).
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'Denoising Algorithm-2 DADA2'""" ;
-    sc:featureList edam:operation_3200,
-        edam:operation_3359,
-        edam:operation_3460 ;
-    sc:name "DADA2_autogenerated" ;
-    sc:url "https://benjjneb.github.io/dada2/tutorial.html" .
-
-<https://bio.tools/DAISY> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3068,
-        edam:topic_3263,
-        edam:topic_3303,
-        edam:topic_3489 ;
-    sc:citation <https://doi.org/10.1093/GIGASCIENCE/GIZ140>,
-        "pmcid:PMC6892452",
-        "pubmed:31800037" ;
-    sc:description """A Data Information System for accountability under the General Data Protection Regulation.
-
-Data Information System (DAISY) is a data bookkeeping application designed to help Biomedical Research institutions with their GDPR compliance.
-
-In addition to loading of initial data, DAISY database can be populated by importing Project and Dataset records from JSON files. The commands for import are given below:.
-
-||| COMMON LINK WITH (PUB. & NAME DIFFERENT) bio.tools/Data_Information_System_DAISY (GITHUB.COM/elixir-luxembourg/daisy)""" ;
-    sc:featureList edam:operation_0224,
-        edam:operation_3096,
-        edam:operation_3283 ;
-    sc:license "AGPL-3.0" ;
-    sc:name "DAISY" ;
-    sc:url "https://github.com/elixir-luxembourg/daisy" .
-
 <https://bio.tools/DAMEfinder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_2885,
@@ -18344,7 +14538,7 @@ In addition to loading of initial data, DAISY database can be populated by impor
     sc:url "https://github.com/markrobinsonuzh/DAMEfinder" .
 
 <https://bio.tools/DAMIAN> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3168,
         edam:topic_3301,
@@ -18366,21 +14560,8 @@ DAMIAN provides capabilities to detect known and novel pathogens in RNA and DNA
     sc:name "DAMIAN" ;
     sc:url "https://sourceforge.net/projects/damian-pd" .
 
-<https://bio.tools/DART-seq> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3170,
-        edam:topic_3295,
-        edam:topic_3308 ;
-    sc:citation <https://doi.org/10.1038/S41592-019-0570-0>,
-        "pubmed:31548708" ;
-    sc:description "> HOMEPAGE MISSING! | an antibody-free method for global m6A detection | N6-methyladenosine (m6A) is a widespread RNA modification that influences nearly every aspect of the messenger RNA lifecycle. Our understanding of m6A has been facilitated by the development of global m6A mapping methods, which use antibodies to immunoprecipitate methylated RNA. However, these methods have several limitations, including high input RNA requirements and cross-reactivity to other RNA modifications. Here, we present DART-seq (deamination adjacent to RNA modification targets), an antibody-free method for detecting m6A sites. In DART-seq, the cytidine deaminase APOBEC1 is fused to the m6A-binding YTH domain. APOBEC1-YTH expression in cells induces C-to-U deamination at sites adjacent to m6A residues, which are detected using standard RNA-seq. DART-seq identifies thousands of m6A sites in cells from as little as 10 ng of total RNA and can detect m6A accumulation in cells over time" ;
-    sc:featureList edam:operation_2495,
-        edam:operation_3096,
-        edam:operation_3258 ;
-    sc:name "DART-seq" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31548708" .
-
 <https://bio.tools/DAStk_-_Differential_ATAC-seq_toolkit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0749 ;
     sc:citation <https://doi.org/10.3390/molecules23051136>,
@@ -18400,22 +14581,8 @@ DAMIAN provides capabilities to detect known and novel pathogens in RNA and DNA
     sc:url "https://github.com/Dowell-Lab/DAStk" ;
     biotools:primaryContact <https://orcid.org/0000-0003-3066-4273> .
 
-<https://bio.tools/DApp> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3263,
-        edam:topic_3303 ;
-    sc:citation <https://doi.org/10.2196/13601>,
-        "pmcid:PMC6835476",
-        "pubmed:31647475" ;
-    sc:description """Building a Secure Biomedical Data Sharing Decentralized App (DApp).
-
-Decentralized apps (DApps) are computer programs that run on a distributed computing system, such as a blockchain network. Unlike the client-server architecture that powers most internet apps, DApps that are integrated with a blockchain network can execute app logic that is guaranteed to be transparent, verifiable, and immutable. This new paradigm has a number of unique properties that are attractive to the biomedical and health care communities. However, instructional resources are scarcely available for biomedical software developers to begin building DApps on a blockchain. Such apps require new ways of thinking about how to build, maintain, and deploy software. This tutorial serves as a complete working prototype of a DApp, motivated by a real use case in biomedical research requiring data privacy.
-
-||| HOMEPAGE MISSING!""" ;
-    sc:name "DApp" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31647475" .
-
 <https://bio.tools/DBH> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3384,
         edam:topic_3474,
         edam:topic_3810 ;
@@ -18425,7 +14592,7 @@ Decentralized apps (DApps) are computer programs that run on a distributed compu
     sc:url "https://doi.org/10.20944/PREPRINTS201907.0158.V1" .
 
 <https://bio.tools/DBTL> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3474,
@@ -18442,31 +14609,16 @@ Decentralized apps (DApps) are computer programs that run on a distributed compu
     sc:url "https://panoramaweb.org/DBTL-ML-for-dodencanol-production-in-e-coli.url" ;
     biotools:primaryContact "Harry R. Beller" .
 
-<https://bio.tools/DC-ADMM> a sc:SoftwareApplication ;
-    sc:citation "pmcid:PMC6818515",
-        "pubmed:31662706" ;
-    sc:description """A New Algorithm and Theory for Penalized Regression-based Clustering.
-
-Clustering is unsupervised and exploratory in nature. Yet, it can be performed through penalized regression with grouping pursuit, as demonstrated in Pan et al. (2013). In this paper, we develop a more efficient algorithm for scalable computation and a new theory of clustering consistency for the method. This algorithm, called DC-ADMM, combines difference of convex (DC) programming with the alternating direction method of multipliers (ADMM). This algorithm is shown to be more computationally efficient than the quadratic penalty based algorithm of Pan et al. (2013) because of the former's closed-form updating formulas. Numerically, we compare the DC-ADMM algorithm with the quadratic penalty algorithm to demonstrate its utility and scalability.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'prclust'""" ;
-    sc:featureList edam:operation_3432,
-        edam:operation_3659 ;
-    sc:name "DC-ADMM" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31662706" .
-
 <https://bio.tools/DCA> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3112" ;
-            sc:name "Gene expression matrix" ;
-            sc:sameAs "http://edamontology.org/data_3112" ] ;
+            sc:additionalType "http://edamontology.org/data_3112" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Gene expression matrix" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3112" ;
-            sc:name "Gene expression matrix" ;
-            sc:sameAs "http://edamontology.org/data_3112" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3112" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Gene expression matrix" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3308 ;
@@ -18485,17 +14637,8 @@ Clustering is unsupervised and exploratory in nature. Yet, it can be performed t
     sc:softwareHelp <https://github.com/theislab/dca/blob/master/tutorial.ipynb> ;
     sc:url "https://github.com/theislab/dca" .
 
-<https://bio.tools/DCM> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0593,
-        edam:topic_3474 ;
-    sc:citation <https://doi.org/10.1109/TIP.2019.2938307>,
-        "pubmed:31502970" ;
-    sc:description "> MEDIUM CONFIDENCE! | > CORRECT NAME OF TOOL COULD ALSO BE 'data computation', 'deep cascade model', 'deep-layered', 'Deep Cascade Model based Face Recognition' | When Deep-layered Learning Meets Small Data | Author : Lei Zhang, Ji Liu, Bob Zhang, David Zhang, and Ce Zhu | This package contains codes for the two submodels DCM(S) and DCM(N) | Published in IEEE Transactions on Image Processing" ;
-    sc:name "DCM" ;
-    sc:url "https://github.com/liuji93/DCM" .
-
 <https://bio.tools/DCMF> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0780,
@@ -18515,7 +14658,7 @@ Clustering is unsupervised and exploratory in nature. Yet, it can be performed t
     biotools:primaryContact "R. J. Edwards" .
 
 <https://bio.tools/DDAP> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
@@ -18536,7 +14679,7 @@ Clustering is unsupervised and exploratory in nature. Yet, it can be performed t
     sc:url "https://tylii.github.io/ddap" .
 
 <https://bio.tools/DDI> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0202,
         edam:topic_0602,
@@ -18550,26 +14693,8 @@ Clustering is unsupervised and exploratory in nature. Yet, it can be performed t
     sc:name "DDI" ;
     sc:url "http://way2drug.com/ddi/" .
 
-<https://bio.tools/DDI-PULearn> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0154,
-        edam:topic_0209,
-        edam:topic_3373 ;
-    sc:citation <https://doi.org/10.1186/S12859-019-3214-6>,
-        "pmcid:PMC6929327",
-        "pubmed:31870276" ;
-    sc:description """a positive-unlabeled learning method for large-scale prediction of drug-drug interactions.
-
-BACKGROUND:Drug-drug interactions (DDIs) are a major concern in patients' medication. It's unfeasible to identify all potential DDIs using experimental methods which are time-consuming and expensive. Computational methods provide an effective strategy, however, facing challenges due to the lack of experimentally verified negative samples. RESULTS:To address this problem, we propose a novel positive-unlabeled learning method named DDI-PULearn for large-scale drug-drug-interaction predictions. DDI-PULearn first generates seeds of reliable negatives via OCSVM (one-class support vector machine) under a high-recall constraint and via the cosine-similarity based KNN (k-nearest neighbors) as well.
-
-||| HOMEPAGE MISSING!""" ;
-    sc:featureList edam:operation_0417,
-        edam:operation_2238,
-        edam:operation_3891 ;
-    sc:name "DDI-PULearn" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31870276" .
-
 <https://bio.tools/DDIA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -18583,30 +14708,8 @@ BACKGROUND:Drug-drug interactions (DDIs) are a major concern in patients' medica
     sc:name "Data dependent-independent acquisition proteomics (DDIA)" ;
     sc:url "https://zenodo.org/deposit/3466997" .
 
-<https://bio.tools/DDIGIP> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0154,
-        edam:topic_0202,
-        edam:topic_0625,
-        edam:topic_3373,
-        edam:topic_3375 ;
-    sc:citation <https://doi.org/10.1186/S12859-019-3093-X>,
-        "pmcid:PMC6929542",
-        "pubmed:31874609" ;
-    sc:description """predicting drug-drug interactions based on Gaussian interaction profile kernels.
-
-BACKGROUND:A drug-drug interaction (DDI) is defined as a drug effect modified by another drug, which is very common in treating complex diseases such as cancer. Many studies have evidenced that some DDIs could be an increase or a decrease of the drug effect. However, the adverse DDIs maybe result in severe morbidity and even morality of patients, which also cause some drugs to withdraw from the market. As the multi-drug treatment becomes more and more common, identifying the potential DDIs has become the key issue in drug development and disease treatment. However, traditional biological experimental methods, including in vitro and vivo, are very time-consuming and expensive to validate new DDIs.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'DDRGIP', 'DDIs'""" ;
-    sc:featureList edam:operation_2428,
-        edam:operation_2492,
-        edam:operation_3439 ;
-    sc:name "DDIGIP" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31874609" .
-
 <https://bio.tools/DDPGPSurv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3375,
         edam:topic_3399,
@@ -18620,7 +14723,7 @@ BACKGROUND:A drug-drug interaction (DDI) is defined as a drug effect modified by
     sc:url "https://github.com/cran/DDPGPSurv" .
 
 <https://bio.tools/DDR> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2640,
@@ -18638,7 +14741,7 @@ BACKGROUND:A drug-drug interaction (DDI) is defined as a drug effect modified by
     sc:url "https://github.com/idellyzhang/DDR" .
 
 <https://bio.tools/DDT> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0176,
         edam:topic_2275,
@@ -18658,7 +14761,7 @@ BACKGROUND:A drug-drug interaction (DDI) is defined as a drug effect modified by
     biotools:primaryContact "Vittorio Limongelli" .
 
 <https://bio.tools/DDVFA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3382,
         edam:topic_3474 ;
@@ -18672,40 +14775,8 @@ BACKGROUND:A drug-drug interaction (DDI) is defined as a drug effect modified by
     sc:name "DDVFA" ;
     sc:url "http://github.com/ACIL-Group/DVFA" .
 
-<https://bio.tools/DECA_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0154,
-        edam:topic_3306,
-        edam:topic_3316,
-        edam:topic_3520,
-        edam:topic_3676 ;
-    sc:citation <https://doi.org/10.1074/MCP.TIR119.001731>,
-        <https://doi.org/10.1186/S12859-019-3108-7>,
-        "pmcid:PMC6787990",
-        "pmcid:PMC6885705",
-        "pubmed:31594786",
-        "pubmed:31604420" ;
-    sc:description """Comprehensive, Automatic Post-processing Program for HDX-MS Data.
-
-scalable XHMM exome copy-number variant calling with ADAM and Apache Spark.
-
-DECA: Deuterium Exchange Correction and Analysis.
-
-Distributed exome CNV analyzer. Apache 2 licensed.
-
-DECA: Distributed Exome CNV Analyzer.
-
-Linderman MD, Chia D, Wallace F, Nothaft FA. DECA: scalable XHMM exome copy-number variant calling with ADAM and Apache Spark. BMC Bioinformatics. 2019;20:493. doi:10.1186/s12859-019-3108-7.
-
-||| NAME EQUAL TO (PUB. DIFFERENT) bio.tools/deca""" ;
-    sc:featureList edam:operation_2476,
-        edam:operation_3227,
-        edam:operation_3629,
-        edam:operation_3891 ;
-    sc:name "DECA_autogenerated" ;
-    sc:url "http://github.com/komiveslab/DECA" .
-
 <https://bio.tools/DECIPHER_rare_disease> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3325,
@@ -18729,7 +14800,7 @@ Linderman MD, Chia D, Wallace F, Nothaft FA. DECA: scalable XHMM exome copy-numb
     biotools:primaryContact "Ganesh Swaminathan" .
 
 <https://bio.tools/DEEPCON> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3474 ;
@@ -18742,7 +14813,7 @@ Linderman MD, Chia D, Wallace F, Nothaft FA. DECA: scalable XHMM exome copy-numb
     sc:url "https://github.com/ba-lab/DEEPCON" .
 
 <https://bio.tools/DEEPSEN> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0199,
         edam:topic_0749,
@@ -18759,7 +14830,7 @@ data and material In this folder, we include all the material and data used in t
     sc:url "https://github.com/1991Troy/DEEPSEN" .
 
 <https://bio.tools/DEEPred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0602,
@@ -18781,7 +14852,7 @@ data and material In this folder, we include all the material and data used in t
         "Volkan Atalay" .
 
 <https://bio.tools/DEN-IM> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3174,
         edam:topic_3293,
         edam:topic_3837 ;
@@ -18801,7 +14872,7 @@ data and material In this folder, we include all the material and data used in t
     biotools:primaryContact "Bioinformatics,  Molecular Microbiology and Infection Unit" .
 
 <https://bio.tools/DENOPTIM> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_2258,
@@ -18822,7 +14893,7 @@ data and material In this folder, we include all the material and data used in t
     sc:url "https://github.com/denoptim-project/DENOPTIM" .
 
 <https://bio.tools/DENSIFE> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -18840,10 +14911,9 @@ data and material In this folder, we include all the material and data used in t
 
 <https://bio.tools/DEOGEN2> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3021" ;
-            sc:name "UniProt accession" ;
-            sc:sameAs "http://edamontology.org/data_3021" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3021" ;
+            sc:name "UniProt accession" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:author "Daniele Raimondi",
         "Ibrahim Tanyalcin" ;
@@ -18856,22 +14926,22 @@ data and material In this folder, we include all the material and data used in t
 
 <https://bio.tools/DEPIB> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3495" ;
-            sc:name "RNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3495" ] ;
+            sc:additionalType "http://edamontology.org/data_3495" ;
+            sc:encodingFormat "http://edamontology.org/format_1931" ;
+            sc:name "RNA sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3768" ;
-            sc:name "Clustered expression profiles" ;
-            sc:sameAs "http://edamontology.org/data_3768" ],
+            sc:additionalType "http://edamontology.org/data_3768" ;
+            sc:encodingFormat "http://edamontology.org/format_3603" ;
+            sc:name "Clustered expression profiles" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ],
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3112" ;
-            sc:name "Gene expression matrix" ;
-            sc:sameAs "http://edamontology.org/data_3112" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3112" ;
+            sc:encodingFormat "http://edamontology.org/format_3751" ;
+            sc:name "Gene expression matrix" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_3308 ;
     sc:author <https://orcid.org/0000-0002-8689-2083>,
@@ -18892,7 +14962,7 @@ data and material In this folder, we include all the material and data used in t
     biotools:primaryContact "Eric Charpentier" .
 
 <https://bio.tools/DEPICTER> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_3334,
@@ -18912,7 +14982,7 @@ DEPICTER : DisorderEd PredictIon CenTER""" ;
     sc:url "http://biomine.cs.vcu.edu/servers/DEPICTER/" .
 
 <https://bio.tools/DEPOD> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0154,
@@ -18930,7 +15000,7 @@ DEPICTER : DisorderEd PredictIon CenTER""" ;
     sc:url "http://depod.bioss.uni-freiburg.de/" .
 
 <https://bio.tools/DEPOT> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_3322,
@@ -18949,25 +15019,8 @@ DEPICTER : DisorderEd PredictIon CenTER""" ;
     sc:url "https://depot.tbportals.niaid.nih.gov" ;
     biotools:primaryContact "Andrei Gabrielian" .
 
-<https://bio.tools/DESE> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0203,
-        edam:topic_0634,
-        edam:topic_0820,
-        edam:topic_3305,
-        edam:topic_3517 ;
-    sc:citation <https://doi.org/10.1186/S13059-019-1801-5>,
-        "pmcid:PMC6836538",
-        "pubmed:31694669" ;
-    sc:description """estimating driver tissues by selective expression of genes associated with complex diseases or traits.
-
-The driver tissues or cell types in which susceptibility genes initiate diseases remain elusive. We develop a unified framework to detect the causal tissues of complex diseases or traits according to selective expression of disease-associated genes in genome-wide association studies (GWASs). This framework consists of three components which run iteratively to produce a converged prioritization list of driver tissues. Additionally, this framework also outputs a list of prioritized genes as a byproduct. We apply the framework to six representative complex diseases or traits with GWAS summary statistics, which leads to the estimation of the lung as an associated tissue of rheumatoid arthritis""" ;
-    sc:featureList edam:operation_2495,
-        edam:operation_3659 ;
-    sc:name "DESE" ;
-    sc:url "http://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pubmed&term=“DiseaseNames" .
-
 <https://bio.tools/DESSO> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Database portal",
         "Web application" ;
@@ -18985,7 +15038,7 @@ The driver tissues or cell types in which susceptibility genes initiate diseases
     sc:url "https://bmbl.bmi.osumc.edu/DESSO" .
 
 <https://bio.tools/DEUS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0659,
@@ -19009,29 +15062,12 @@ The driver tissues or cell types in which susceptibility genes initiate diseases
     sc:url "http://ibis.helmholtz-muenchen.de/deus/" ;
     biotools:primaryContact "Tim Jeske" .
 
-<https://bio.tools/DEVASYS> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0634,
-        edam:topic_0749,
-        edam:topic_3063,
-        edam:topic_3068 ;
-    sc:citation <https://doi.org/10.1055/A-1005-6755>,
-        "pubmed:31842242" ;
-    sc:description """Development of an Online Tool to Support Systematic Evaluation of Intervention Projects in Prevention and Health Promotion].
-
-OBJECTIVES:To date, knowledge about the effects and implementation quality of disease prevention and health promotion projects in Germany is limited. Only a few structured evaluation systems exist that can be easily used and which include features for evaluating research and practice projects. The aim of the current project was to develop and carry out a pilot study of an online evaluation tool that enables structured self-evaluation of projects in disease prevention and health promotion practice and contributes to an improved documentation and cyclical development of projects.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'prevention' (bio.tools/prevention), 'disease', 'RE-AIM' (bio.tools/RE-AIM), 'practice-oriented'""" ;
-    sc:name "DEVASYS" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31842242" .
-
 <https://bio.tools/DEWE_Differential_Expression_Workflow_Executor> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3496" ;
-            sc:name "RNA sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_3496" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3496" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "RNA sequence (raw)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1016/j.compbiomed.2019.02.021>,
@@ -19050,31 +15086,8 @@ DEWE offers built-in, easy-to-configure workflows that facilitate the execution
     sc:softwareVersion "1.2.0" ;
     sc:url "https://www.sing-group.org/dewe/" .
 
-<https://bio.tools/DEmiRs> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0659,
-        edam:topic_2640,
-        edam:topic_3360,
-        edam:topic_3518 ;
-    sc:citation <https://doi.org/10.1155/2019/1571045>,
-        "pmcid:PMC6913280",
-        "pubmed:31871878" ;
-    sc:description """A Circulating miRNA-Based Scoring System Established by WGCNA to Predict Colon Cancer.
-
-Introduction:Circulation microRNAs (miRNAs) perform as potential diagnostic biomarkers of many kinds of cancers. This study is aimed at identifying circulation miRNAs as diagnostic biomarkers in colon cancer. Methods:We conducted a weighted gene coexpression network analysis (WGCNA) in miRNAs to find out the expression pattern among circulation miRNAs by using a "WGCNA" package in R. Correlation analysis was performed to find cancer-related modules. Differentially expressed miRNAs (DEmiRs) in colon cancer were identified by a "limma" package in R. Hub gene analysis was conducted for these DEmiRs in the cancer-related modules by the "closeness" method in cytoscape software.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'WGCNA' (bio.tools/wgcna)""" ;
-    sc:featureList edam:operation_0463,
-        edam:operation_3463,
-        edam:operation_3659,
-        edam:operation_3766,
-        edam:operation_3792 ;
-    sc:name "DEmiRs" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31871878" .
-
 <https://bio.tools/DEvis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3308 ;
@@ -19095,48 +15108,8 @@ Introduction:Circulation microRNAs (miRNAs) perform as potential diagnostic biom
     sc:url "https://cran.r-project.org/package=DEVis" ;
     biotools:primaryContact "Adam Price" .
 
-<https://bio.tools/DHH_hearing_bilingual_learners> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3399 ;
-    sc:citation <https://doi.org/10.1044/2019_AJSLP-IDLL-19-0003>,
-        "pubmed:31398302" ;
-    sc:description "> VERY_LOW CONFIDENCE! | > HOMEPAGE MISSING! | > CORRECT NAME OF TOOL COULD ALSO BE 'hearing bilingual learners', 'DHH hearing bilingual', 'bilingual learners', 'DHH learners' | Evidence-Based Interventions for Learners Who Are Deaf and/or Multilingual | Purpose Many educators and speech-language pathologists have difficulty providing effective interventions to the growing population of d Deaf and hard-of-hearing (DHH) learners who use more than 1 language. The purpose of this review article was to identify evidence-based interventions for speech, language, and literacy used with DHH multilingual learners (DMLs), monolingual DHH learners, and hearing bilingual learners without hearing loss. Interventions used with these groups can inform the practice of professionals providing services to DMLs. Method This review article considered speech, language, and literacy interventions used with DHH and hearing bilingual learners from birth to 21 years of age" ;
-    sc:name "DHH hearing bilingual learners" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31398302" .
-
-<https://bio.tools/DHI> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0593,
-        edam:topic_0634,
-        edam:topic_0749,
-        edam:topic_3384,
-        edam:topic_3444 ;
-    sc:citation <https://doi.org/10.1101/19009126> ;
-    sc:description """Diffusion Histology Imaging to Improve Lesion Detection and Classification in Multiple Sclerosis.
-
-Background: Diagnosing MS through magnetic resonance imaging (MRI) requires extensive clinical experience and tedious work. Furthermore, MRI-indicated MS lesion locations rarely align with the patients' symptoms and often contradict with pathology studies. Our lab has developed and modified a novel diffusion basis spectrum imaging (DBSI) technique to address the shortcomings of MRI-based MS diagnoses. Although primary DBSI metrics have been demonstrated to be associated with axonal injury loss, demyelination and inflammation, a more detailed analysis using multiple DBSI-structural metrics to improve the accuracy of MS lesion detection and differentiation is still needed.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'DBSI'""" ;
-    sc:featureList edam:operation_3359,
-        edam:operation_3435,
-        edam:operation_3443 ;
-    sc:name "DHI" ;
-    sc:url "https://doi.org/10.1101/19009126" .
-
-<https://bio.tools/DIA> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0121,
-        edam:topic_0154,
-        edam:topic_3520 ;
-    sc:citation "pmcid:PMC6698785" ;
-    sc:description "> VERY_LOW CONFIDENCE! | > HOMEPAGE MISSING! | > CORRECT NAME OF TOOL COULD ALSO BE 'PASEF', 'diaPASEF', 'Mobi-DIK' | Our goal is to develop high throughput method for sampling peptides with a mass spectrometer that can be used as a quantitative measure of the phenotype. To do this we would like a tandem mass spectrometry (MS MS) method that can comprehensively sample all peptides in a sample continuously throughout the chromatographic elution. MS MS acquired using data independent acquisition (DIA) offers significant advantages in terms of selectivity, sensitivity, and dynamic range over a single stage of mass analysis. Quantitative analysis using MS MS has significant technical advantages over MS1 analysis and we are just now in a situation where we can get high selectivity (<4 m z) across a majority of the mass range (i.e. 400 1000 m z) using a rapid duty cycle (<3 sec). That said, this does not mean that there are not substantial challenges to overcome" ;
-    sc:featureList edam:operation_0417,
-        edam:operation_3639,
-        edam:operation_3755 ;
-    sc:name "DIA" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6698785/" .
-
 <https://bio.tools/DIA-DB> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0780,
@@ -19163,7 +15136,7 @@ Background: Diagnosing MS through magnetic resonance imaging (MRI) requires exte
         "Zeno Apostolides" .
 
 <https://bio.tools/DIA-NN> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application",
         "Library" ;
@@ -19188,54 +15161,30 @@ None required (for .raw, .mzML and .dia processing). Two executables are provide
 
 <https://bio.tools/DIA-Umpire> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ],
-        [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ],
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_3747" ;
+            sc:name "Expression data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0850" ;
-            sc:name "Sequence set" ;
-            sc:sameAs "http://edamontology.org/data_0850" ],
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3654" ;
+            sc:name "Mass spectrometry spectra" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ],
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3654" ;
+            sc:name "Mass spectrometry spectra" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ],
-        [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0850" ;
-            sc:name "Sequence set" ;
-            sc:sameAs "http://edamontology.org/data_0850" ],
-        [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ],
-        [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
+            sc:additionalType "http://edamontology.org/data_0850" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence set" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ],
-        [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ],
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3651" ;
+            sc:name "Mass spectrometry spectra" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ],
-        [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Expression data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -19260,56 +15209,8 @@ None required (for .raw, .mzML and .dia processing). Two executables are provide
     sc:url "https://sourceforge.net/projects/diaumpire/" ;
     biotools:primaryContact "Chih-Chiang Tsou" .
 
-<https://bio.tools/DIAMOND_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3379 ;
-    sc:citation <https://doi.org/10.1017/CTS.2019.157>,
-        "pmcid:PMC6799722" ;
-    sc:description """A Digital Platform for Workforce Development.
-
-OBJECTIVES SPECIFIC AIMS: The DIAMOND project encourages study team workforce development through the creation of a digital learning space that brings together resources from across the CTSA consortium. This allows for widespread access to and dissemination of training and assessment materials. DIAMOND also includes access to an ePortfolio that encourages CRPs to define career goals and document professional skills and training. METHODS STUDY POPULATION: Four CTSA institutions (the University of Michigan, the Ohio State University, University of Rochester, and Tufts CTSI) collaborated to develop and implement the DIAMOND portal. The platform is structured around eight competency domains, making it easy for users to search for research training and assessment materials.
-
-||| HOMEPAGE MISSING!.
-
-||| NAME (DIAMOND) SIMILAR TO (PUB. DIFFERENT) bio.tools/diamond (Diamond).
-
-||| CORRECT NAME OF TOOL COULD ALSO BE '3143 DIAMOND', 'ePortfolio'""" ;
-    sc:name "DIAMOND_autogenerated" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6799722/" .
-
-<https://bio.tools/DICOM> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0605,
-        edam:topic_3360,
-        edam:topic_3384,
-        edam:topic_3444,
-        edam:topic_3452 ;
-    sc:citation <https://doi.org/10.7287/PEERJ.PREPRINTS.1541V2>,
-        "pmcid:PMC4888317",
-        "pubmed:27257542" ;
-    sc:description """A standards based approach to sharing of clinical data and structured PET/CT analysis results in head and neck cancer research.
-
-Scripts used for conversion of the data for the PET/CT quantitative imaging biomarker development project by the Iowa site of NCI QIN.
-
-NOTE: these scripts were used for conversion of the Iowa QIN-HEADNECK derived data.
-
-Documentation/Nightly/Modules/DICOMPETSUVPlugin.
-
-They are not maintained, and instead the general purpose functionality is being.
-
-migrated into the Reporting repository https://github.com/fedorov/Reporting.
-
-Pieper S, Kikinis R, Buatti J, Beichel RR. (2016) DICOM for quantitative imaging.
-
-Acknowledgments: The UIowa QIN PET DICOM Extension was funded in part by Quantitative Imaging to Assess Response in Cancer Therapy Trials NIH grant U01-CA140206 and Quantitative Image Informatics for Cancer Research (QIICR) NIH grant U24 CA180918""" ;
-    sc:featureList edam:operation_1812,
-        edam:operation_3431,
-        edam:operation_3443,
-        edam:operation_3799 ;
-    sc:name "DICOM" ;
-    sc:softwareHelp <http://wiki.slicer.org/slicerWiki/index.php/Documentation/Nightly/Modules/DICOMPETSUVPlugin> ;
-    sc:url "https://github.com/QIICR/Iowa2DICOM" .
-
 <https://bio.tools/DIEM> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3170,
@@ -19328,7 +15229,7 @@ Acknowledgments: The UIowa QIN PET DICOM Extension was funded in part by Quantit
     sc:url "https://github.com/marcalva/diem" .
 
 <https://bio.tools/DIFFUSE> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3320,
         edam:topic_3474,
         edam:topic_3512 ;
@@ -19343,33 +15244,8 @@ Acknowledgments: The UIowa QIN PET DICOM Extension was funded in part by Quantit
     sc:name "DIFFUSE" ;
     sc:url "https://github.com/haochenucr/DIFFUSE" .
 
-<https://bio.tools/DILI> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3324,
-        edam:topic_3379,
-        edam:topic_3403 ;
-    sc:citation <https://doi.org/10.1177/1060028019892587>,
-        "pubmed:31786964" ;
-    sc:description """Drug-Induced Liver Injury (DILI) With Micafungin.
-
-Background: Micafungin is increasingly used in the treatment and prevention of candidiasis in hospitalized patients. Limited data are available from which to assess the risk of drug-induced liver injury (DILI) with micafungin. No studies, to date, have applied a standardized causality assessment method to the study of micafungin-associated DILI. Objective: This study aimed to identify the frequency and clinical pattern of DILI in micafungin-treated patients as determined using 2 standardized causality assessment algorithms. Methods: A retrospective analysis was conducted of micafungin-treated patients at a single center between May 15, 2017, and May 15, 2018. DILI was defined on the basis of liver test elevations and the presence of associated signs and symptoms. The Roussel UClaf Causality Assessment Method (RUCAM) and the Naranjo algorithm were applied to each case.
-
-||| HOMEPAGE MISSING!""" ;
-    sc:featureList edam:operation_3435 ;
-    sc:name "DILI" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31786964" .
-
-<https://bio.tools/DIMDI> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0154,
-        edam:topic_3399,
-        edam:topic_3419 ;
-    sc:citation <https://doi.org/10.1055/A-0948-5301>,
-        "pubmed:31450249" ;
-    sc:description "> MEDIUM CONFIDENCE! | > CORRECT NAME OF TOOL COULD ALSO BE 'OBJECTIVES:Since', 'RESULTS:At' | Can Routine Data be used to Determine the Target Population of Patients with Type 2 Diabetes in Early Benefit Assessments in Germany? | Bestellanfrage für die ICF-Buchausgabe | Informationssystem Versorgungsdaten | Medizinprodukte-Informationssystem" ;
-    sc:name "DIMDI" ;
-    sc:url "https://www.dimdi.de/" .
-
 <https://bio.tools/DIME> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0625,
@@ -19386,7 +15262,7 @@ Is a Shiny app.""" ;
     sc:url "https://bitbucket.org/systemsimmunology/dime" .
 
 <https://bio.tools/DIMERBOW> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0153,
@@ -19406,7 +15282,7 @@ Is a Shiny app.""" ;
     sc:url "http://lmc.uab.es/dimerbow/" .
 
 <https://bio.tools/DIPY> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Suite" ;
     sc:applicationSubCategory edam:topic_3384,
@@ -19422,7 +15298,7 @@ Is a Shiny app.""" ;
     sc:url "http://dipy.org" .
 
 <https://bio.tools/DIRECT> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0097,
         edam:topic_0099 ;
@@ -19440,7 +15316,7 @@ It is widely believed that tertiary nucleotide-nucleotide interactions are essen
     sc:url "https://zhaolab.com.cn/DIRECT/" .
 
 <https://bio.tools/DISCo-microbe> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0780,
         edam:topic_3174,
@@ -19453,30 +15329,16 @@ It is widely believed that tertiary nucleotide-nucleotide interactions are essen
     sc:name "Design of an Identifiable Synthetic Community of Microbes (DISCo-microbe)" ;
     sc:url "https://github.com/dlcarper/DISCo-microbe" .
 
-<https://bio.tools/DISIT-Twitter> a sc:SoftwareApplication ;
-    sc:citation <https://doi.org/10.7287/PEERJ.PREPRINTS.2241V2> ;
-    sc:description """Weather events identification in social media streams.
-
-Severe weather impact identification and monitoring through social media data is a good challenge for data science. In last years we assisted to an increase of natural disasters, also due to climate change. Many works showed that during such events people tend to share specific messages by of mean of social media platforms, especially Twitter. Not only they contribute to"situational" awareness also improving the dissemination of information during emergency but can be used to assess social impact of crisis events. We present in this work preliminary findings concerning how temporal distribution of weather related messages may help the identification of severe events that impacted a community.
-
-||| HOMEPAGE BROKEN!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'DISIT-Twitter Vigilance', 'weather', 'Weather events identification social media streams', 'parallel-wise'""" ;
-    sc:featureList edam:operation_0337,
-        edam:operation_3280 ;
-    sc:name "DISIT-Twitter" ;
-    sc:url "http://www.disit.org/tv/" .
-
 <https://bio.tools/DISNOR> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2526" ;
-            sc:name "Text data" ;
-            sc:sameAs "http://edamontology.org/data_2526" ] ;
+            sc:additionalType "http://edamontology.org/data_2526" ;
+            sc:encodingFormat "http://edamontology.org/format_3242" ;
+            sc:name "Text data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:encodingFormat "http://edamontology.org/format_3242" ;
+            sc:name "Pathway or network" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3325 ;
@@ -19501,7 +15363,7 @@ Severe weather impact identification and monitoring through social media data is
     biotools:primaryContact "Livia Perfetto" .
 
 <https://bio.tools/DISOselect> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0123,
@@ -19517,7 +15379,7 @@ Severe weather impact identification and monitoring through social media data is
     sc:url "http://biomine.cs.vcu.edu/servers/DISOselect/" .
 
 <https://bio.tools/DISSEQT> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3168,
@@ -19533,28 +15395,8 @@ Severe weather impact identification and monitoring through social media data is
     sc:name "Distribution-based modeling of Sequence space time dynamics (DISSEQT)" ;
     sc:url "https://github.com/rasmushenningsson/DISSEQT.jl" .
 
-<https://bio.tools/DIVERCROP> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3489,
-        edam:topic_3810,
-        edam:topic_3855 ;
-    sc:citation <https://doi.org/10.1016/J.DIB.2019.104774>,
-        "pmcid:PMC6880016",
-        "pubmed:31788512" ;
-    sc:description """An open dataset about georeferenced harmonized national agricultural censuses and surveys of seven mediterranean countries.
-
-Divercrop – The DIVERCROP project aims to highlight interactions between current dynamics of the Mediterranean agricultural practices, species diversity and local food systems.
-
-Index of /gn_plateau_ressources/divercrop.
-
-The DIVERCROP project aims to highlights interactions between current dynamics of the Mediterranean agricultural practices, species diversity and local food systems at multiple spatial scales.
-
-||| COMMON LINK WITH (PUB. & NAME DIFFERENT) bio.tools/phylosift (WORDPRESS.COM), bio.tools/WATCLUST (WORDPRESS.COM), bio.tools/PinMol (WORDPRESS.COM), bio.tools/imdev (WORDPRESS.COM), bio.tools/graphdtl (WORDPRESS.COM)""" ;
-    sc:featureList edam:operation_3359 ;
-    sc:name "DIVERCROP" ;
-    sc:url "https://divercropblog.wordpress.com/" .
-
 <https://bio.tools/DIpartite> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3169 ;
@@ -19570,7 +15412,7 @@ The DIVERCROP project aims to highlights interactions between current dynamics o
     sc:url "https://github.com/Mohammad-Vahed/DIpartite" .
 
 <https://bio.tools/DL-SDM> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3050,
         edam:topic_3474 ;
@@ -19581,7 +15423,7 @@ The DIVERCROP project aims to highlights interactions between current dynamics o
     sc:url "https://github.com/naturalis/trait-geo-diverse-dl" .
 
 <https://bio.tools/DLIGAND2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0154,
@@ -19598,7 +15440,7 @@ The DIVERCROP project aims to highlights interactions between current dynamics o
     sc:url "https://github.com/sysu-yanglab/DLIGAND2" .
 
 <https://bio.tools/DLITE> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2229 ;
     sc:citation <https://doi.org/10.1016/J.BPJ.2019.09.034>,
@@ -19612,7 +15454,7 @@ Cell shapes and connectivities evolve over time as the colony changes shape or e
     sc:url "https://github.com/AllenCellModeling/DLITE" .
 
 <https://bio.tools/DLO_Hi-C> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0602,
@@ -19629,28 +15471,8 @@ Cell shapes and connectivities evolve over time as the colony changes shape or e
     sc:operatingSystem "Linux" ;
     sc:url "https://github.com/GuoliangLi-HZAU/DLO-Hi-C-Tool" .
 
-<https://bio.tools/DLP> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0084,
-        edam:topic_0625,
-        edam:topic_0654,
-        edam:topic_2229,
-        edam:topic_3673 ;
-    sc:citation <https://doi.org/10.1016/J.CELL.2019.10.026>,
-        "pmcid:PMC6912164",
-        "pubmed:31730858" ;
-    sc:description """Clonal Decomposition and DNA Replication States Defined by Scaled Single-Cell Genome Sequencing.
-
-Collection of Standard Operating Procedures (SOPs) for DLP+""" ;
-    sc:featureList edam:operation_0487,
-        edam:operation_3196,
-        edam:operation_3435,
-        edam:operation_3436,
-        edam:operation_3629 ;
-    sc:name "DLP+" ;
-    sc:url "https://github.com/shahcompbio/dlpplus_protocols" .
-
 <https://bio.tools/DMPfold> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0736,
         edam:topic_3474 ;
@@ -19665,22 +15487,8 @@ Collection of Standard Operating Procedures (SOPs) for DLP+""" ;
     sc:name "DMPfold" ;
     sc:url "https://github.com/psipred/DMPfold" .
 
-<https://bio.tools/DNA> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0654,
-        edam:topic_3295,
-        edam:topic_3399 ;
-    sc:citation <https://doi.org/10.1186/S13073-019-0667-1>,
-        "pmcid:PMC6708158",
-        "pubmed:31443728" ;
-    sc:description "> LOW CONFIDENCE! | > CORRECT NAME OF TOOL COULD ALSO BE 'non-blood' | Improved precision of epigenetic clock estimates across tissues and its implication for biological ageing | A chronological age predictor based on DNA methylation | input_file: a R object file which contains the DNA methylation information for individuals (N * M matrix). N is the number of individuals and M is the number of CpG sites. Beta value is used as DNA methylation measurement" ;
-    sc:featureList edam:operation_3196,
-        edam:operation_3501,
-        edam:operation_3891 ;
-    sc:name "DNA" ;
-    sc:url "https://github.com/qzhang314/DNAm-based-age-predictor" .
-
 <https://bio.tools/DNA-BOT> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0114,
         edam:topic_0196,
@@ -19704,7 +15512,7 @@ Users looking to implement the DNA-BOT workflow are encouraged to consult the in
     sc:url "https://github.com/BASIC-DNA-ASSEMBLY/dnabot" .
 
 <https://bio.tools/DNABarcodeCompatibility> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Library" ;
     sc:applicationSubCategory edam:topic_3168,
@@ -19727,7 +15535,7 @@ Users looking to implement the DNA-BOT workflow are encouraged to consult the in
     biotools:primaryContact "Céline Trébeau" .
 
 <https://bio.tools/DNA_Chisel> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library",
         "Web application" ;
@@ -19748,7 +15556,7 @@ DNA Chisel is a Python library for optimizing DNA sequences with respect to a se
     sc:url "https://edinburgh-genome-foundry.github.io/" .
 
 <https://bio.tools/DNA_Rchitect> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3169,
@@ -19761,31 +15569,8 @@ DNA Chisel is a Python library for optimizing DNA sequences with respect to a se
     sc:name "DNA Rchitect" ;
     sc:url "http://shiny.immgen.org/DNARchitect/" .
 
-<https://bio.tools/DNA_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0632,
-        edam:topic_0654,
-        edam:topic_3168 ;
-    sc:citation <https://doi.org/10.1038/S41596-019-0244-5>,
-        "pubmed:31784718" ;
-    sc:description """Reading and writing digital data in DNA.
-
-Error correction scheme for storing information on DNA using Reed Solomon codes.
-
-For the inner code we decide on a symbol size mi of 6 bit, for the outer code the symbol size mo is 14 bit. These values reflect considerations on accessible DNA sequence lengths and optimal code length.
-
-||| NAME EQUAL TO (PUB. DIFFERENT) bio.tools/DNA.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 're-obtaining', 'digital', 'error-correcting', 'decodes'""" ;
-    sc:featureList edam:operation_0308,
-        edam:operation_0371,
-        edam:operation_2422,
-        edam:operation_2520 ;
-    sc:license "Apache-2.0" ;
-    sc:name "DNA_autogenerated" ;
-    sc:url "https://github.com/reinhardh/dna_rs_coding" .
-
 <https://bio.tools/DNAm-age-predictor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3295,
@@ -19801,7 +15586,7 @@ For the inner code we decide on a symbol size mi of 6 bit, for the outer code th
     sc:url "https://github.com/qzhang314/DNAm-based-age-predictor" .
 
 <https://bio.tools/DNAproDB> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application",
         "Workflow" ;
@@ -19833,7 +15618,7 @@ DNAproDB is a database, structure processing pipeline and web-based visualizatio
     sc:url "https://dnaprodb.usc.edu" .
 
 <https://bio.tools/DNAscan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_3316,
         edam:topic_3673,
@@ -19857,30 +15642,8 @@ DNAproDB is a database, structure processing pipeline and web-based visualizatio
     sc:url "https://github.com/KHP-Informatics/DNAscan" ;
     biotools:primaryContact "KCL IoPPN: NIHR BRC-MH Bioinformatics Group" .
 
-<https://bio.tools/DNBSEQ> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_2885,
-        edam:topic_3170,
-        edam:topic_3173,
-        edam:topic_3673,
-        edam:topic_3676 ;
-    sc:citation <https://doi.org/10.1101/2019.12.20.885517> ;
-    sc:description """Advanced Whole Genome Sequencing Using a Complete PCR-free Massively Parallel Sequencing (MPS) Workflow.
-
-High-speed,high flexibility and ultra-high throughput sequencer-MGI.
-
-DNBSEQ-T7 can generate 1-6Tb of high quality data per day, for a wide range of applications including Whole Genome Sequencing, Deep Exome Sequencing, Epigenome Sequencing, Transcriptome Sequencing, and targeted panel projects.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'MGI', 'PCR-free', 'PCR-free WGS', 'PCR-free DNBSEQ'""" ;
-    sc:featureList edam:operation_0484,
-        edam:operation_3192,
-        edam:operation_3196,
-        edam:operation_3211,
-        edam:operation_3227 ;
-    sc:name "DNBSEQ" ;
-    sc:url "https://en.mgitech.cn/product/detail/DNBSEQ-T7.html" .
-
 <https://bio.tools/DNCON2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_3174,
@@ -19896,7 +15659,7 @@ DNBSEQ-T7 can generate 1-6Tb of high quality data per day, for a wide range of a
     sc:url "http://sysbio.rnet.missouri.edu/dncon2/" .
 
 <https://bio.tools/DNLC> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0203,
         edam:topic_0602,
@@ -19915,7 +15678,7 @@ Using Local Moran's I for detection of differential network local consistency"""
     sc:url "https://cran.r-project.org/web/packages/DNLC" .
 
 <https://bio.tools/DNMIVD> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_2640,
@@ -19933,22 +15696,8 @@ DNA methylation is strongly related to cancer, currently, no resource integrativ
     sc:name "DNA Methylation Interactive Visualization Database (DNMIVD)" ;
     sc:url "http://www.unimd.org/dnmivd/" .
 
-<https://bio.tools/DNN> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0166,
-        edam:topic_0209,
-        edam:topic_3474 ;
-    sc:citation <https://doi.org/10.1021/ACS.JMEDCHEM.9B01129>,
-        "pubmed:31553186" ;
-    sc:description "> CORRECT NAME OF TOOL COULD ALSO BE 'ESP' (bio.tools/esp) | Practical High-Quality Electrostatic Potential Surfaces for Drug Discovery Using a Graph-Convolutional Deep Neural Network | A Graph-Convolutional Deep Neural Network for predicting electrostatic potential surfaces | For generating ligand PQR files, a graph convolutional deep neural network (DNN) model, trained on ESP surfaces derived using DFT calculations for ~100,000 molecules, is used. For proteins, parametrized charges for amino acids are used, which are fully compatible with the ligand ESP surfaces generated using the DNN model" ;
-    sc:featureList edam:operation_0387,
-        edam:operation_0394,
-        edam:operation_0480 ;
-    sc:license "Apache-2.0" ;
-    sc:name "DNN" ;
-    sc:url "https://github.com/AstexUK/ESP_DNN" .
-
 <https://bio.tools/DNSS2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0160,
@@ -19967,7 +15716,7 @@ DNA methylation is strongly related to cancer, currently, no resource integrativ
     biotools:primaryContact "Jianlin Cheng" .
 
 <https://bio.tools/DO-MS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -19991,14 +15740,16 @@ DNA methylation is strongly related to cancer, currently, no resource integrativ
     biotools:primaryContact "Nikolai Slavov" .
 
 <https://bio.tools/DOGMA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0736,
         edam:topic_3308 ;
     sc:citation <https://doi.org/10.1093/NAR/GKZ366>,
+        <https://doi.org/10.1093/bioinformatics/btw231>,
         "pmcid:PMC6602495",
+        "pubmed:27153665",
         "pubmed:31076763" ;
     sc:description "Domain-based transcriptome and proteome quality assessment." ;
     sc:featureList edam:operation_3218 ;
@@ -20012,24 +15763,8 @@ DNA methylation is strongly related to cancer, currently, no resource integrativ
     sc:url "https://domainworld-services.uni-muenster.de/dogma/" ;
     biotools:primaryContact <https://orcid.org/0000-0002-2416-9842> .
 
-<https://bio.tools/DOMtegrity> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3263,
-        edam:topic_3520 ;
-    sc:citation <https://doi.org/10.1007/S10207-019-00442-1>,
-        "pmcid:PMC6777511",
-        "pubmed:31632229" ;
-    sc:description """ensuring web page integrity against malicious browser extensions.
-
-In this paper, we address an unsolved problem in the real world: how to ensure the integrity of the web content in a browser in the presence of malicious browser extensions. The problem of exposing confidential user credentials to malicious extensions has been widely understood, which has prompted major banks to deploy two-factor authentication. However, the importance of the "integrity" of the web content has received little attention. We implement two attacks on real-world online banking websites and show that ignoring the "integrity" of the web content can fundamentally defeat two-factor solutions. To address this problem, we propose a cryptographic protocol called DOMtegrity to ensure the end-to-end integrity of the DOM structure of a web page from delivering at a web server to the rendering of the page in the user's browser.
-
-||| HOMEPAGE MISSING!""" ;
-    sc:featureList edam:operation_0337,
-        edam:operation_3435 ;
-    sc:name "DOMtegrity" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31632229" .
-
 <https://bio.tools/DORMAN> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3068,
@@ -20046,7 +15781,7 @@ We apologize for the inconvenience, but it appears that an internal error has oc
     sc:url "http://ciceklab.cs.bilkent.edu.tr/dorman" .
 
 <https://bio.tools/DOVE> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_3423,
         edam:topic_3512,
@@ -20066,38 +15801,8 @@ We apologize for the inconvenience, but it appears that an internal error has oc
     sc:url "http://www.dmd.nl/DOVE" ;
     biotools:primaryContact "Mitch Bailey" .
 
-<https://bio.tools/DOVE_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0128,
-        edam:topic_0166,
-        edam:topic_2269,
-        edam:topic_2275,
-        edam:topic_3474 ;
-    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTZ870>,
-        "pubmed:31746961" ;
-    sc:description """Protein Docking Model Evaluation by 3D Deep Convolutional Neural Networks.
-
-A Deep-learning based dOcking decoy eValuation mEthod.
-
-Dove evaluates computational protein-protein docking models by 8 deep learning networks and provides the probability that the decoy is correct.
-
-Online platform: http://kiharalab.org/dove/.
-
-title={Protein Docking Model Evaluation by 3D Deep Convolutional Neural Networks},.
-
-(1) Dove is a protein docking model evaluation method, which distinguish good quality (acceptable quality in the CAPRI-criteria) from incorrect models. It is trained on around 2 million examples.
-
-author={Wang, Xiao and Terashi, Genki and Christoffer, Charles W and Zhu, Mengmeng and Kihara, Daisuke},.
-
-||| NAME EQUAL TO (PUB. DIFFERENT) bio.tools/DOVE""" ;
-    sc:featureList edam:operation_0321,
-        edam:operation_0477,
-        edam:operation_3899 ;
-    sc:license "GPL-3.0" ;
-    sc:name "DOVE_autogenerated" ;
-    sc:url "http://kiharalab.org/dove/" .
-
 <https://bio.tools/DPre> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3170,
@@ -20114,7 +15819,7 @@ DPre is a bioinformatic tool that enables the user to explore cell type conversi
     sc:url "https://github.com/LoaloaF/DPre" .
 
 <https://bio.tools/DQueST> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0218,
         edam:topic_3063,
@@ -20128,7 +15833,7 @@ DPre is a bioinformatic tool that enables the user to explore cell type conversi
     sc:url "https://github.com/stormliucong/dquest-flask" .
 
 <https://bio.tools/DR-thermo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3318,
         edam:topic_3489 ;
@@ -20145,7 +15850,7 @@ The DR-thermo algorithm can be used to curate experimental thermodynamic data fr
     sc:url "https://github.com/samansalike/DR-thermo" .
 
 <https://bio.tools/DRAMP> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3301,
@@ -20162,7 +15867,7 @@ The DR-thermo algorithm can be used to curate experimental thermodynamic data fr
     sc:url "http://dramp.cpu-bioinfor.org/" .
 
 <https://bio.tools/DRAMS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0203,
@@ -20183,7 +15888,7 @@ The DR-thermo algorithm can be used to curate experimental thermodynamic data fr
     sc:url "https://github.com/Yi-Jiang/DRAMS" .
 
 <https://bio.tools/DREAP> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3855 ;
     sc:citation <https://doi.org/10.1016/J.EJMP.2019.06.013>,
@@ -20192,21 +15897,8 @@ The DR-thermo algorithm can be used to curate experimental thermodynamic data fr
     sc:name "DREAP" ;
     sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31515012" .
 
-<https://bio.tools/DROIDS_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0154,
-        edam:topic_0176,
-        edam:topic_3474 ;
-    sc:citation <https://doi.org/10.1101/724211> ;
-    sc:description "> MEDIUM CONFIDENCE! | > NAME EQUAL TO (PUB. DIFFERENT) bio.tools/droids | > CORRECT NAME OF TOOL COULD ALSO BE 'MD', 'maxDemon' | Machine learning based detection of genetic and drug class variant impact on functionally conserved protein binding dynamics | DROIDS-3.0-comparative-protein-dynamics | The Babbitt Lab at RIT has developed DROIDS 3.0 + maxDemon 1.0, a software package for comparative protein dynamics and measure of genetic and drug class impacts on functional dynamics. Vist our website for more details.. | a GUI based script PATHS.pl will prompt paths to working directories for UCSF Chimera, Amber forcefields, and Amber Home directory and write a .ctl file. Then the main DROIDS menu will pop up. Requires Amber 16/18 license and some dependencies in R, python and perl (see user doc with download)" ;
-    sc:featureList edam:operation_0244,
-        edam:operation_0417,
-        edam:operation_2476 ;
-    sc:license "GPL-3.0" ;
-    sc:name "DROIDS_autogenerated" ;
-    sc:url "https://github.com/gbabbitt/DROIDS-3.0-comparative-protein-dynamics" .
-
 <https://bio.tools/DROPA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3168,
@@ -20223,7 +15915,7 @@ The DR-thermo algorithm can be used to curate experimental thermodynamic data fr
     sc:url "https://github.com/marcrusso/DROPA" .
 
 <https://bio.tools/DRUDIT> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0602,
@@ -20238,30 +15930,24 @@ The DR-thermo algorithm can be used to curate experimental thermodynamic data fr
     sc:url "http://www.drudit.com" .
 
 <https://bio.tools/DRV> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0160,
         edam:topic_0166 ;
     sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTZ906>,
         "pubmed:31793988" ;
-    sc:description "DNA Readout Viewer is a free on-line service providing novel and intuitive visualisation modes for displaying sequence specific DNA-protein interactions.",
-        """visualisation of specificity determining patterns of protein binding DNA segments.
-
-SUMMARY:The sequence specific recognition of DNA by regulatory proteins typically occurs by establishing hydrogen bonds and non-bonded contacts between chemical substructures of nucleotides and amino acids forming the compatible interacting surfaces. The recognition process is also influenced by the physicochemical and conformational character of the target oligonucleotide motif. Although the role of these mechanisms in DNA-protein interactions is well-established, bioinformatical methods rarely address them directly, instead binding specificity is mostly assessed at nucleotide level. DNA Readout Viewer (DRV) aims to provide a novel DNA representation, facilitating in-depth view into these mechanisms by the concurrent visualisation of functional groups and a diverse collection of DNA descriptors.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'AVAILABILITY:DRV', 'DNA Readout Viewer'""" ;
+    sc:description "DNA Readout Viewer is a free on-line service providing novel and intuitive visualisation modes for displaying sequence specific DNA-protein interactions." ;
     sc:featureList edam:operation_0239,
         edam:operation_0337,
         edam:operation_3894 ;
-    sc:name "DNA Readout Viewer",
-        "DRV" ;
+    sc:name "DNA Readout Viewer" ;
     sc:softwareHelp <https://drv.brc.hu/help/about_drv.html>,
         <https://drv.brc.hu/help/quick_start_guide.html> ;
     sc:url "https://drv.brc.hu" .
 
 <https://bio.tools/DRfit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0821,
         edam:topic_3336,
@@ -20284,7 +15970,7 @@ SUMMARY:The sequence specific recognition of DNA by regulatory proteins typicall
     sc:url "http://www.structuralchemistry.org/pcsb/drfit.php" .
 
 <https://bio.tools/DSEA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0202,
@@ -20304,22 +15990,8 @@ SUMMARY:The sequence specific recognition of DNA by regulatory proteins typicall
         "Diego di Bernardo",
         "Francesco Napolitano" .
 
-<https://bio.tools/DSID> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3305,
-        edam:topic_3370,
-        edam:topic_3390 ;
-    sc:citation <https://doi.org/10.1093/JN/NXY092>,
-        <https://doi.org/10.1093/JN/NXY134>,
-        "pubmed:31505676",
-        "pubmed:31505677" ;
-    sc:description "> CORRECT NAME OF TOOL COULD ALSO BE 'DSID DSLD' | Dietary Supplement Ingredient Database (DSID) and the Application of Analytically Based Estimates of Ingredient Amount to Intake Calculations | Challenges in Developing Analytically Validated Laboratory-Derived Dietary Supplement Databases | Dietary Supplement Ingredient Database | Dietary Supplement Ingridient Database | The Dietary Supplement Ingredient Database (DSID) provides estimated levels of ingredients in dietary supplement products sold in the United States" ;
-    sc:featureList edam:operation_2428,
-        edam:operation_3891 ;
-    sc:name "DSID" ;
-    sc:url "https://dsid.usda.nih.gov" .
-
 <https://bio.tools/DSIMB_tools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_1317 ;
     sc:description "A collection of databases, tools and web servers for structural biology." ;
@@ -20327,7 +15999,7 @@ SUMMARY:The sequence specific recognition of DNA by regulatory proteins typicall
     sc:url "http://www.dsimb.inserm.fr/tools/" .
 
 <https://bio.tools/DTA-SiST> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3170,
         edam:topic_3308,
@@ -20348,7 +16020,7 @@ The RNA-seq has revolutionized our ability to transcripts reconstruction""" ;
     sc:url "https://github.com/Jane110111107/DTA-SiST" .
 
 <https://bio.tools/DTCLab> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0209,
@@ -20367,7 +16039,7 @@ The RNA-seq has revolutionized our ability to transcripts reconstruction""" ;
     sc:url "http://teqip.jdvu.ac.in/QSAR_Tools/DTCLab/" .
 
 <https://bio.tools/DTI-CDF> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0202,
         edam:topic_3336,
@@ -20382,24 +16054,8 @@ The RNA-seq has revolutionized our ability to transcripts reconstruction""" ;
     sc:name "DTI-CDF" ;
     sc:url "https://github.com//a96123155/DTI-CDF" .
 
-<https://bio.tools/DTSGUI> a sc:SoftwareApplication ;
-    sc:citation <https://doi.org/10.1111/GWAT.12974>,
-        "pubmed:31840251" ;
-    sc:description """A Python program to process and visualize fiber-optic distributed temperature sensing data.
-
-Fiber-optic distributed temperature sensing (FO-DTS) has proven to be a transformative technology for the hydrologic sciences, with application to diverse problems including hyporheic exchange, groundwater surface-water interaction, fractured-rock characterization, and cold-regions hydrology. FO-DTS produces large, complex, and information-rich datasets. Despite the potential of FO-DTS, adoption of the technology has been impeded by lack of tools for data processing, analysis, and visualization. New tools are needed to efficiently and fully capitalize on the information content of FO-DTS datasets. To this end, we present DTSGUI, a public-domain Python-based software package for editing, parsing, processing, statistical analysis, georeferencing, and visualization of FO-DTS data.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'FO-DTS', 'fiber-optic'""" ;
-    sc:featureList edam:operation_0337,
-        edam:operation_1812,
-        edam:operation_3096 ;
-    sc:name "DTSGUI" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31840251" .
-
 <https://bio.tools/DUETT> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0099,
         edam:topic_0749 ;
@@ -20412,25 +16068,8 @@ Fiber-optic distributed temperature sensing (FO-DTS) has proven to be a transfor
     sc:name "DUETT" ;
     sc:url "https://github.com/BagheriLab/DUETT" .
 
-<https://bio.tools/DUQuA> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0621,
-        edam:topic_3489,
-        edam:topic_3572 ;
-    sc:citation <https://doi.org/10.1093/INTQHC/MZZ103>,
-        "pubmed:31725882" ;
-    sc:description """An overview of a nation-wide, multi-level analysis of relationships between quality management systems and patient factors in 32 hospitals.
-
-OBJECTIVE:The Deepening our Understanding of Quality in Australia (DUQuA) project is a multisite, multilevel, cross-sectional study of 32 of the largest hospitals in Australia. This overview examines relationships between (i) organization-level quality management systems and department-level quality management strategies and (ii) patient-level measures (clinical treatment processes, patient-reported perceptions of care and clinical outcomes) within Australian hospitals. DESIGN:We examined hospital quality improvement structures, processes and outcomes, collecting data at organization, department and patient levels for acute myocardial infarction (AMI), hip fracture and stroke.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'Deepening our Understanding Quality Australia', 'department-level', 'patient-level', 'DUQuE'""" ;
-    sc:featureList edam:operation_3891 ;
-    sc:name "DUQuA" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31725882" .
-
 <https://bio.tools/DVASS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0097,
@@ -20454,18 +16093,18 @@ OBJECTIVE:The Deepening our Understanding of Quality in Australia (DUQuA) projec
 
 <https://bio.tools/DaReUS-Loop> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ],
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ] ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein structure" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein structure" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2275,
         edam:topic_3542 ;
@@ -20483,7 +16122,7 @@ OBJECTIVE:The Deepening our Understanding of Quality in Australia (DUQuA) projec
         "Sjoerd de Vries" .
 
 <https://bio.tools/Dashing> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3174,
@@ -20500,7 +16139,7 @@ OBJECTIVE:The Deepening our Understanding of Quality in Australia (DUQuA) projec
     sc:url "https://github.com/dnbaker/dashing" .
 
 <https://bio.tools/DatView> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2828,
         edam:topic_3794 ;
     sc:author "Natasha Stander" ;
@@ -20519,37 +16158,23 @@ DatView displays plots of tabular data and syncs selections across plots. It was
         <https://zatsepinlab.atlassian.net/wiki/spaces/DAT/pages/827785219/Tutorial+2019> ;
     sc:url "https://github.com/nstander/DatView" .
 
-<https://bio.tools/Data> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0623 ;
-    sc:citation <https://doi.org/10.1016/J.DIB.2019.104233>,
-        "pmcid:PMC6702380",
-        "pubmed:31453280" ;
-    sc:description "> LOW CONFIDENCE! | Data set on the influence of members of a couple on family vacation decision-making | This article describes a database on the perceptions of members of a couple regarding the influence exerted in three stages (initiation, search, and final decision) and seven sub-decisions (destination, accommodation, transport, budget, date, activities, restaurants) in the family vacation decision-making process. We obtained responses from 375 couples, whose members each completed the questionnaire individually, which also enables researchers to obtain information about the consensus between the perceptions of both regarding said influence. To complement this information, we also included sociodemographic and travel behavior variables for the couples analyzed. The data are publicly available at https: github.com mmrojasgracia Data-in-Brief_Influence" ;
-    sc:name "Data" ;
-    sc:url "https://github.com/mmrojasgracia/Data-in-Brief_Influence" .
-
 <https://bio.tools/DataDiscovery> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2353" ;
-            sc:name "Ontology data" ;
-            sc:sameAs "http://edamontology.org/data_2353" ],
+            sc:additionalType "http://edamontology.org/data_0968" ;
+            sc:name "Keyword" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0968" ;
-            sc:name "Keyword" ;
-            sc:sameAs "http://edamontology.org/data_0968" ] ;
+            sc:additionalType "http://edamontology.org/data_2353" ;
+            sc:name "Ontology data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2080" ;
-            sc:name "Database search results" ;
-            sc:sameAs "http://edamontology.org/data_2080" ],
+            sc:additionalType "http://edamontology.org/data_2093" ;
+            sc:name "Data reference" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2093" ;
-            sc:name "Data reference" ;
-            sc:sameAs "http://edamontology.org/data_2093" ],
+            sc:additionalType "http://edamontology.org/data_0842" ;
+            sc:name "Identifier" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0842" ;
-            sc:name "Identifier" ;
-            sc:sameAs "http://edamontology.org/data_0842" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2080" ;
+            sc:name "Database search results" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web API",
         "Web application",
@@ -20581,7 +16206,7 @@ This tool is expected to be easily customizable for specific filters, environmen
     biotools:primaryContact "urgi-support" .
 
 <https://bio.tools/Data_Information_System_DAISY> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3071,
         edam:topic_3394,
@@ -20611,7 +16236,7 @@ This tool is expected to be easily customizable for specific filters, environmen
         "Regina Becker" .
 
 <https://bio.tools/Data_Stewardship_Wizard> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0605 ;
     sc:author <https://orcid.org/0000-0001-7525-9218>,
@@ -20626,25 +16251,15 @@ This tool is expected to be easily customizable for specific filters, environmen
     sc:isAccessibleForFree true ;
     sc:license "Apache-2.0" ;
     sc:name "Data Stewardship Wizard" ;
-    sc:softwareHelp <https://docs.ds-wizard.org/>,
-        <https://docs.ds-wizard.org/en/latest/admin/installation.html> ;
+    sc:softwareHelp <https://guide.ds-wizard.org/>,
+        <https://guide.ds-wizard.org/miscellaneous/development/roadmap>,
+        <https://guide.ds-wizard.org/miscellaneous/self-hosted-dsw/deployment> ;
     sc:url "https://ds-wizard.org" ;
     biotools:primaryContact <https://orcid.org/0000-0001-7525-9218>,
         <https://orcid.org/0000-0003-2980-4400> .
 
-<https://bio.tools/Data_Trends_Maps> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3305,
-        edam:topic_3318,
-        edam:topic_3390 ;
-    sc:citation <https://doi.org/10.5888/PCD16.190043>,
-        "pmcid:PMC6795071",
-        "pubmed:31560645" ;
-    sc:description "> LOW CONFIDENCE! | > CORRECT NAME OF TOOL COULD ALSO BE 'DTM', 'Data Decision-Making' | Exploring the Division of Nutrition, Physical Activity, and Obesity's Data, Trends, and Maps | Nutrition, Physical Activity, and Obesity | Data, Trends and Maps is an interactive database that provides data on weight status as well as select behavioral, environmental and policy data in the areas of breastfeeding, diet and physical activity | Centers for Disease Control and Prevention. CDC twenty four seven. Saving Lives, Protecting People" ;
-    sc:name "Data Trends Maps" ;
-    sc:url "https://www.cdc.gov/nccdphp/dnpao/data-trends-maps/index.html" .
-
 <https://bio.tools/Databio> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0108,
@@ -20664,7 +16279,7 @@ This tool is expected to be easily customizable for specific filters, environmen
     sc:url "https://datab.io/" .
 
 <https://bio.tools/Datastorr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_0769,
@@ -20686,7 +16301,7 @@ This tool is expected to be easily customizable for specific filters, environmen
         "Rich FitzJohn" .
 
 <https://bio.tools/De-smokeGCN> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_3384,
         edam:topic_3421,
@@ -20702,27 +16317,8 @@ This tool is expected to be easily customizable for specific filters, environmen
     sc:name "De-smokeGCN" ;
     sc:url "https://github.com/melights/cnn_desmoke" .
 
-<https://bio.tools/DeCoDe_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0130,
-        edam:topic_0154,
-        edam:topic_0654,
-        edam:topic_0821,
-        edam:topic_3512 ;
-    sc:citation <https://doi.org/10.1101/809004> ;
-    sc:description """degenerate codon design for complete protein-coding DNA libraries.
-
-To run DeCoDe, you will need a local installation of Gurobi with an appropriate lisence (academic licenses are provided for free direct from Gurobi). You will also need to install gurobipy and make sure that you are able to import it from within your local environment.
-
-||| NAME (DeCoDe) SIMILAR TO (PUB. DIFFERENT) bio.tools/decode (deCODE)""" ;
-    sc:featureList edam:operation_0416,
-        edam:operation_3745,
-        edam:operation_3795 ;
-    sc:license "MIT" ;
-    sc:name "DeCoDe_autogenerated" ;
-    sc:url "http://github.com/OrensteinLab/DeCoDe" .
-
 <https://bio.tools/DeLinker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0209,
         edam:topic_2275,
@@ -20745,7 +16341,7 @@ We provide two settings of DeLinker. The first setting generates linkers with th
     sc:url "https://github.com/oxpig/DeLinker" .
 
 <https://bio.tools/DeTerm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0749,
@@ -20763,7 +16359,7 @@ We provide two settings of DeLinker. The first setting generates linkers with th
     sc:url "https://bitbucket.org/skibbe/DeTerm/wiki/Home" .
 
 <https://bio.tools/DecoMetDIA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3172,
         edam:topic_3370,
@@ -20777,21 +16373,8 @@ We provide two settings of DeLinker. The first setting generates linkers with th
     sc:name "DecoMetDIA" ;
     sc:url "https://github.com/ZhuMSLab/DecoMetDIA" .
 
-<https://bio.tools/Decoding_Language_Microbiomes> a sc:SoftwareApplication ;
-    sc:additionalType "Script" ;
-    sc:applicationSubCategory edam:topic_0602,
-        edam:topic_0634,
-        edam:topic_3697 ;
-    sc:citation <https://doi.org/10.1101/748152> ;
-    sc:description "Leveraging Patterns in 16S Public Data using Word-Embedding Techniques and Applications in Inflammatory Bowel Disease | Microbiomarkers Discovery in Inflammatory Bowel Diseases using Network-Based Feature Selection | Help Design Your New ACM Digital Library | We're upgrading the ACM DL, and would like your input. Please sign up to review new features, functionality and page designs | Danmarks Tekniske Informationscenter | Check out the beta version of the next ACM DL" ;
-    sc:featureList edam:operation_3501,
-        edam:operation_3798,
-        edam:operation_3891 ;
-    sc:name "Decoding Language Microbiomes" ;
-    sc:url "https://github.com/MaudeDavidLab/gut_microbiome_embeddings" .
-
 <https://bio.tools/DecontaMiner> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3168,
         edam:topic_3173,
@@ -20812,7 +16395,7 @@ We provide two settings of DeLinker. The first setting generates linkers with th
     sc:url "http://www-labgtp.na.icar.cnr.it/decontaminer" .
 
 <https://bio.tools/DecoyDeveloper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -20832,7 +16415,7 @@ We provide two settings of DeLinker. The first setting generates linkers with th
     sc:url "http://glycopro.chem.ku.edu/JHome.php" .
 
 <https://bio.tools/DeePathology> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_0659,
         edam:topic_2640,
@@ -20852,7 +16435,7 @@ Authors: Behrooz Azarkhalili, Ali Saberi, Hamidreza Chitsaz, Ali Sharifi-Zarchi"
     sc:url "https://github.com/SharifBioinf/DeePathology" .
 
 <https://bio.tools/Deep-Z> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_3382,
@@ -20875,7 +16458,7 @@ Neural network learns fluorescence wave propagation and time-reversal to propaga
     sc:url "https://github.com/puppy101puppy/Deep-Z" .
 
 <https://bio.tools/DeepAttentionPan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0199,
@@ -20895,22 +16478,12 @@ Usage: the codes can be used to train our models, output results on the testing
     sc:name "DeepAttentionPan" ;
     sc:url "https://github.com/jjin49/DeepAttentionPan" .
 
-<https://bio.tools/DeepAuC> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0602,
-        edam:topic_3474 ;
-    sc:citation <https://doi.org/10.1371/JOURNAL.PONE.0220813>,
-        "pmcid:PMC6692019",
-        "pubmed:31408477" ;
-    sc:description "> MEDIUM CONFIDENCE! | > HOMEPAGE MISSING! | > CORRECT NAME OF TOOL COULD ALSO BE 'NDN', 'ISP', 'congestion', 'auction' | Joint deep learning and auction for congestion-aware caching in Named Data Networking | Over the last few decades, the Internet has experienced tremendous growth in data traffic. This continuous growth due to the increase in the number of connected devices and platforms has dramatically boosted content consumption. However, retrieving content from the servers of Content Providers (CPs) can increase network traffic and incur high network delay and congestion. To address these challenges, we propose a joint deep learning and auction-based approach for congestion-aware caching in Named Data Networking (NDN), which aims to prevent congestion and minimize the content downloading delays. First, using recorded network traffic data on the Internet Service Provider (ISP) network, we propose a deep learning model to predict future traffic over transit links" ;
-    sc:name "DeepAuC" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31408477" .
-
 <https://bio.tools/DeepBGC> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3494" ;
-            sc:name "DNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3494" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:encodingFormat "http://edamontology.org/format_1936" ;
+            sc:name "DNA sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3172,
@@ -20926,7 +16499,7 @@ Usage: the codes can be used to train our models, output results on the testing
     sc:url "https://github.com/Merck/deepbgc" .
 
 <https://bio.tools/DeepBindRG> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_2275,
         edam:topic_3474 ;
@@ -20940,7 +16513,7 @@ Usage: the codes can be used to train our models, output results on the testing
     sc:url "https://github.com/haiping1010/DeepBindRG" .
 
 <https://bio.tools/DeepCC> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2640,
@@ -20955,7 +16528,7 @@ Usage: the codes can be used to train our models, output results on the testing
     sc:url "https://cityuhk-compbio.github.io/DeepCC/" .
 
 <https://bio.tools/DeepCINAC> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_2229,
@@ -20979,22 +16552,22 @@ Abstract Two-photon calcium imaging is now widely used to indirectly infer multi
 
 <https://bio.tools/DeepCLIP> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ],
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Nucleic acid sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2012" ;
-            sc:name "Sequence coordinates" ;
-            sc:sameAs "http://edamontology.org/data_2012" ] ;
+            sc:additionalType "http://edamontology.org/data_2012" ;
+            sc:encodingFormat "http://edamontology.org/format_3585" ;
+            sc:name "Sequence coordinates" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1772" ;
-            sc:name "Score" ;
-            sc:sameAs "http://edamontology.org/data_1772" ],
+            sc:additionalType "http://edamontology.org/data_1772" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Score" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0950" ;
-            sc:name "Mathematical model" ;
-            sc:sameAs "http://edamontology.org/data_0950" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0950" ;
+            sc:encodingFormat "http://edamontology.org/format_4002" ;
+            sc:name "Mathematical model" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0128,
@@ -21018,7 +16591,7 @@ Abstract Two-photon calcium imaging is now widely used to indirectly infer multi
     biotools:primaryContact <https://orcid.org/0000-0002-5315-8325> .
 
 <https://bio.tools/DeepCOP> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0204,
         edam:topic_2640 ;
@@ -21031,7 +16604,7 @@ Abstract Two-photon calcium imaging is now widely used to indirectly infer multi
     sc:url "https://github.com/godwinwoo/DeepCOP" .
 
 <https://bio.tools/DeepCalpain> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_2640,
@@ -21047,7 +16620,7 @@ Abstract Two-photon calcium imaging is now widely used to indirectly infer multi
     sc:url "http://deepcalpain.cancerbio.info/" .
 
 <https://bio.tools/DeepCirCode> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3320,
         edam:topic_3474,
@@ -21070,7 +16643,7 @@ Abstract Two-photon calcium imaging is now widely used to indirectly infer multi
         "Liangjiang Wang" .
 
 <https://bio.tools/DeepCleave> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0821,
@@ -21084,7 +16657,7 @@ Abstract Two-photon calcium imaging is now widely used to indirectly infer multi
     sc:url "http://deepcleave.erc.monash.edu/" .
 
 <https://bio.tools/DeepDBP> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0654,
@@ -21100,7 +16673,7 @@ Abstract Two-photon calcium imaging is now widely used to indirectly infer multi
     sc:url "https://github.com/antorkhan/DNABinding" .
 
 <https://bio.tools/DeepDNA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_2269,
         edam:topic_2815,
@@ -21118,7 +16691,7 @@ Abstract Two-photon calcium imaging is now widely used to indirectly infer multi
     sc:url "https://github.com/rongjiewang/DeepDNA" .
 
 <https://bio.tools/DeepDRBP-2L> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0121,
@@ -21137,7 +16710,7 @@ DNA-binding proteins (DBPs) and RNA-binding proteins (RBPs) are two kinds of cru
     sc:url "http://bliulab.net/DeepDRBP-2L" .
 
 <https://bio.tools/DeepEP> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0203,
         edam:topic_3170,
@@ -21154,7 +16727,7 @@ DNA-binding proteins (DBPs) and RNA-binding proteins (RBPs) are two kinds of cru
     sc:url "https://github.com/CSUBioGroup/DeepEP" .
 
 <https://bio.tools/DeepHF> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0099,
@@ -21171,7 +16744,7 @@ DNA-binding proteins (DBPs) and RNA-binding proteins (RBPs) are two kinds of cru
     sc:url "http://www.DeepHF.com/" .
 
 <https://bio.tools/DeepHLApan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2640,
@@ -21200,7 +16773,7 @@ DeepHLApan is a deep learning approach used for predicting high-confidence neoan
     sc:url "http://biopharm.zju.edu.cn/deephlapan" .
 
 <https://bio.tools/DeepImageJ> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0605,
@@ -21219,7 +16792,7 @@ DeepImageJ is a user-friendly plugin that enables the use of a variety of pre-tr
     sc:url "https://deepimagej.github.io/deepimagej/" .
 
 <https://bio.tools/DeepImpute> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -21237,7 +16810,7 @@ DeepImageJ is a user-friendly plugin that enables the use of a variety of pre-tr
     sc:url "https://github.com/lanagarmire/DeepImpute" .
 
 <https://bio.tools/DeepInsight> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3304,
         edam:topic_3382,
@@ -21252,7 +16825,7 @@ DeepImageJ is a user-friendly plugin that enables the use of a variety of pre-tr
     sc:url "https://github.com/CYHSM/DeepInsight" .
 
 <https://bio.tools/DeepLigand> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
         edam:topic_2830 ;
@@ -21266,7 +16839,7 @@ DeepImageJ is a user-friendly plugin that enables the use of a variety of pre-tr
     sc:url "https://github.com/gifford-lab/DeepLigand" .
 
 <https://bio.tools/DeepMAsED> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3174,
@@ -21281,7 +16854,7 @@ DeepImageJ is a user-friendly plugin that enables the use of a variety of pre-tr
     sc:url "https://github.com/leylabmpi/DeepMAsED" .
 
 <https://bio.tools/DeepMF> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_2640,
@@ -21296,28 +16869,8 @@ DeepImageJ is a user-friendly plugin that enables the use of a variety of pre-tr
     sc:name "DeepMF" ;
     sc:url "https://github.com/paprikachan/DeepMF" .
 
-<https://bio.tools/DeepMF_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0102,
-        edam:topic_0659,
-        edam:topic_2640,
-        edam:topic_3474,
-        edam:topic_3512 ;
-    sc:citation <https://doi.org/10.1186/S12859-019-3291-6>,
-        "pmcid:PMC6933662",
-        "pubmed:31881818" ;
-    sc:description """deciphering the latent patterns in omics profiles with a deep learning method.
-
-BACKGROUND:With recent advances in high-throughput technologies, matrix factorization techniques are increasingly being utilized for mapping quantitative omics profiling matrix data into low-dimensional embedding space, in the hope of uncovering insights in the underlying biological processes. Nevertheless, current matrix factorization tools fall short in handling noisy data and missing entries, both deficiencies that are often found in real-life data. RESULTS:Here, we propose DeepMF, a deep neural network-based factorization model. DeepMF disentangles the association between molecular feature-associated and sample-associated latent matrices, and is tolerant to noisy and missing values.
-
-||| NAME EQUAL TO (PUB. DIFFERENT) bio.tools/DeepMF""" ;
-    sc:featureList edam:operation_2495,
-        edam:operation_3557,
-        edam:operation_3799 ;
-    sc:name "DeepMF_autogenerated" ;
-    sc:url "https://github.com/paprikachan/DeepMF" .
-
 <https://bio.tools/DeepMSA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
@@ -21340,7 +16893,7 @@ DeepMSA is a composite approach to generate high quality multiple sequence align
     sc:url "https://zhanglab.ccmb.med.umich.edu/DeepMSA/" .
 
 <https://bio.tools/DeepMSPeptide> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -21356,7 +16909,7 @@ DeepMSA is a composite approach to generate high quality multiple sequence align
     sc:url "https://github.com/vsegurar/DeepMSPeptide" .
 
 <https://bio.tools/DeepMicro> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3305,
@@ -21375,7 +16928,7 @@ DeepMicro is a deep representation learning framework exploiting various autoenc
     sc:url "https://github.com/minoh0201/DeepMicro" .
 
 <https://bio.tools/DeepMir> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_3170,
@@ -21393,14 +16946,14 @@ DeepMicro is a deep representation learning framework exploiting various autoenc
 
 <https://bio.tools/DeepMito> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2974" ;
-            sc:name "Protein sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_2974" ] ;
+            sc:additionalType "http://edamontology.org/data_2974" ;
+            sc:encodingFormat "http://edamontology.org/format_2200" ;
+            sc:name "Protein sequence (raw)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2955" ;
-            sc:name "Sequence report" ;
-            sc:sameAs "http://edamontology.org/data_2955" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2955" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Sequence report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0140 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btz512> ;
@@ -21410,11 +16963,10 @@ DeepMicro is a deep representation learning framework exploiting various autoenc
     sc:isAccessibleForFree true ;
     sc:name "DeepMito" ;
     sc:softwareVersion "1.0" ;
-    sc:url "http://busca.biocomp.unibo.it/deepmito" ;
-    sc:version "1.0" .
+    sc:url "http://busca.biocomp.unibo.it/deepmito" .
 
 <https://bio.tools/DeepPASTA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3474,
@@ -21434,7 +16986,7 @@ DeepMicro is a deep representation learning framework exploiting various autoenc
     biotools:primaryContact "Ashraful Arefeen" .
 
 <https://bio.tools/DeepPPISP> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0154,
@@ -21460,7 +17012,7 @@ The PSSMs, raw sequences, secondary structures and labels are given in data_cach
     sc:url "http://bioinformatics.csu.edu.cn/PPISP/" .
 
 <https://bio.tools/DeepPVP> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0625,
@@ -21481,7 +17033,7 @@ The PSSMs, raw sequences, secondary structures and labels are given in data_cach
     biotools:primaryContact "Bio-Ontology Research Group" .
 
 <https://bio.tools/DeepPheno> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0625,
@@ -21501,7 +17053,7 @@ The PSSMs, raw sequences, secondary structures and labels are given in data_cach
     sc:url "https://github.com/bio-ontology-research-group/deeppheno" .
 
 <https://bio.tools/DeepPoseKit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_3304,
@@ -21520,7 +17072,7 @@ DeepPoseKit is a software toolkit with a high-level API for 2D pose estimation o
     sc:url "https://github.com/jgraving/deepposekit" .
 
 <https://bio.tools/DeepPromise> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_3170,
@@ -21541,14 +17093,14 @@ RNA post-transcriptional modifications play a crucial role in a myriad of biolog
 
 <https://bio.tools/DeepRank> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1461" ;
-            sc:name "Protein-ligand complex" ;
-            sc:sameAs "http://edamontology.org/data_1461" ] ;
+            sc:additionalType "http://edamontology.org/data_1461" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein-ligand complex" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0888" ;
-            sc:name "Structure similarity score" ;
-            sc:sameAs "http://edamontology.org/data_0888" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0888" ;
+            sc:encodingFormat "http://edamontology.org/format_3590" ;
+            sc:name "Structure similarity score" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_2814 ;
@@ -21568,7 +17120,7 @@ DeepRank contains useful APIs for pre-processing PPIs data, computing features a
     sc:url "https://github.com/DeepRank/deeprank" .
 
 <https://bio.tools/DeepRiPP> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2229,
@@ -21586,7 +17138,7 @@ Deepginsen is a lantipeptide that is genomically encoded distantly from its modi
     sc:url "http://deepripp.magarveylab.ca" .
 
 <https://bio.tools/DeepSV> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2885,
         edam:topic_3168,
@@ -21609,7 +17161,7 @@ DeepSV, an approach based on deep learning for calling long deletions from seque
     sc:url "https://github.com/CSuperlei/DeepSV" .
 
 <https://bio.tools/DeepScreening> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0632,
@@ -21628,7 +17180,7 @@ DeepScreening is a user-friendly web server for constructing deep learning model
     sc:url "http://deepscreening.xielab.net" .
 
 <https://bio.tools/DeepSeqPanII> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2830,
         edam:topic_3474 ;
@@ -21641,7 +17193,7 @@ DeepScreening is a user-friendly web server for constructing deep learning model
     sc:url "https://github.com/pcpLiu/DeepSeqPanII" .
 
 <https://bio.tools/DeepShape> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0203,
@@ -21660,7 +17212,7 @@ For the estimation of Isoform-Level Ribosome Abundance and Distribution Accurate
     sc:url "https://github.com/cuihf06/DeepShape" .
 
 <https://bio.tools/DeepSide> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0208,
         edam:topic_0209,
@@ -21674,7 +17226,7 @@ For the estimation of Isoform-Level Ribosome Abundance and Distribution Accurate
     sc:url "http://github.com/OnurUner/DeepSide" .
 
 <https://bio.tools/DeepSpCas9> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0157,
         edam:topic_0749,
@@ -21688,25 +17240,8 @@ For the estimation of Isoform-Level Ribosome Abundance and Distribution Accurate
     sc:softwareHelp <http://deepcrispr.info/DeepSpCas9/page/help> ;
     sc:url "http://deepcrispr.info/DeepSpCas9" .
 
-<https://bio.tools/DeepSpCas9_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0157,
-        edam:topic_0749,
-        edam:topic_3168 ;
-    sc:citation <https://doi.org/10.1126/SCIADV.AAX9249>,
-        "pmcid:PMC6834390",
-        "pubmed:31723604" ;
-    sc:description """deep learning-based model with high generalization performance.
-
-We evaluated SpCas9 activities at 12,832 target sequences using a high-throughput approach based on a human cell library containing single-guide RNA-encoding and target sequence pairs. Deep learning-based training on this large dataset of SpCas9-induced indel frequencies led to the development of a SpCas9 activity-predicting model named DeepSpCas9. When tested against independently generated datasets (our own and those published by other groups), DeepSpCas9 showed high generalization performance. DeepSpCas9 is available at http: deepcrispr.info DeepSpCas9.
-
-||| NAME EQUAL TO (PUB. DIFFERENT) bio.tools/DeepSpCas9.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'SpCas9 activity prediction DeepSpCas9'""" ;
-    sc:name "DeepSpCas9_autogenerated" ;
-    sc:url "http://deepcrispr.info/DeepSpCas9" .
-
 <https://bio.tools/DeepSplice> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3320,
@@ -21728,7 +17263,7 @@ We evaluated SpCas9 activities at 12,832 target sequences using a high-throughpu
     biotools:primaryContact "Yi Zhang" .
 
 <https://bio.tools/DeepSymNet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3360,
         edam:topic_3384,
@@ -21746,7 +17281,7 @@ A data-driven method based that identifies longitudinal changes in 3D structural
     sc:url "https://gitlab.com/lgianca/longitudinal-deepsymnet" .
 
 <https://bio.tools/DeepSyn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0634,
@@ -21762,7 +17297,7 @@ A data-driven method based that identifies longitudinal changes in 3D structural
     sc:url "http://github.com/wangshenguiuc/DeepSyn/" .
 
 <https://bio.tools/DeepType> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_2640,
@@ -21780,7 +17315,7 @@ A data-driven method based that identifies longitudinal changes in 3D structural
     biotools:primaryContact "Yijun Sun" .
 
 <https://bio.tools/DeepUbi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -21801,7 +17336,7 @@ A data-driven method based that identifies longitudinal changes in 3D structural
     sc:url "https://github.com/Sunmile/DeepUbi" .
 
 <https://bio.tools/Deep_Docking> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0154,
@@ -21822,7 +17357,7 @@ Drug discovery is an extensive and rigorous process that requires up to 2 billio
     sc:url "https://github.com/vibudh2209/D2" .
 
 <https://bio.tools/Deep_Splicing_Code> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3320,
         edam:topic_3512 ;
@@ -21837,7 +17372,7 @@ Drug discovery is an extensive and rigorous process that requires up to 2 billio
     sc:url "https://home.jbnu.ac.kr/NSCL/dsc.htm" .
 
 <https://bio.tools/DeltaNeTS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0203,
@@ -21857,7 +17392,7 @@ DeltaNeTS+ is a major improvement to our previous method DeltaNet. DeltaNeTS+ is
     sc:url "http://www.github.com/cabsel/deltanetsplus" .
 
 <https://bio.tools/Dentareport> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3399,
         edam:topic_3405 ;
     sc:citation <https://doi.org/10.1016/J.COMPBIOMED.2019.103437>,
@@ -21867,7 +17402,7 @@ DeltaNeTS+ is a major improvement to our previous method DeltaNet. DeltaNeTS+ is
     sc:url "http://dentareport.de/" .
 
 <https://bio.tools/DepMap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_2269,
@@ -21882,7 +17417,7 @@ DeltaNeTS+ is a major improvement to our previous method DeltaNet. DeltaNeTS+ is
     sc:url "https://depmap.org" .
 
 <https://bio.tools/DepthFinder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3295,
         edam:topic_3321,
@@ -21899,17 +17434,8 @@ DeltaNeTS+ is a major improvement to our previous method DeltaNet. DeltaNeTS+ is
     sc:url "https://bitbucket.org/jerlar73/depthfinder/src/master/" ;
     biotools:primaryContact "Jerome Laroche" .
 
-<https://bio.tools/Dermatology> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3399,
-        edam:topic_3400,
-        edam:topic_3404 ;
-    sc:citation "pubmed:31553870" ;
-    sc:description "> LOW CONFIDENCE! | > CORRECT NAME OF TOOL COULD ALSO BE 'JPF02549', 'E-Verify', 'Act', 'equity_inclusion' | Advertisement for Assistant/Associate/Full ClinX/HSCP (4 Positions) UC Davis School of Medicine, Department of Dermatology | Our team of board-certified dermatologists treats common conditions such as acne, eczema and skin allergies, as well as complex and uncommon skin disorders | Our Experts in Dermatological Care | Welcome to the Department of Dermatology | Patients throughout the region count on the UC Davis Department of Dermatology to treat their common conditions such as acne, eczema and skin allergies, as well as complex and uncommon skin disorders | Call for an Appointment: 916-734-6111" ;
-    sc:name "Dermatology" ;
-    sc:url "http://www.ucdmc.ucdavis.edu/dermatology" .
-
 <https://bio.tools/DesignSignatures> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0632,
@@ -21928,7 +17454,7 @@ DeltaNeTS+ is a major improvement to our previous method DeltaNet. DeltaNeTS+ is
     biotools:primaryContact "Kalin H. Vetsigian" .
 
 <https://bio.tools/Deuteros> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154 ;
@@ -21946,25 +17472,8 @@ DeltaNeTS+ is a major improvement to our previous method DeltaNet. DeltaNeTS+ is
     sc:url "https://github.com/andymlau/Deuteros" ;
     biotools:primaryContact "Argyris Politis" .
 
-<https://bio.tools/Development_Australian_Cancer_Atlas> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_2269,
-        edam:topic_2640 ;
-    sc:citation <https://doi.org/10.1186/S12942-019-0185-9>,
-        "pmcid:PMC6771109",
-        "pubmed:31570101" ;
-    sc:description """spatial modelling, visualisation, and reporting of estimates.
-
-An interactive, online atlas designed to show how the burden of cancer varies across small geographical areas for the whole country, using the latest available data.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'Atlas' (bio.tools/atlas), 'Atlas September', 'Australian Statistical'""" ;
-    sc:featureList edam:operation_3435,
-        edam:operation_3503,
-        edam:operation_3659 ;
-    sc:name "Development Australian Cancer Atlas" ;
-    sc:url "https://atlas.cancer.org.au" .
-
 <https://bio.tools/DeviaTE> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_0798,
@@ -21983,7 +17492,7 @@ An interactive, online atlas designed to show how the burden of cancer varies ac
     sc:url "https://github.com/W-L/deviaTE" .
 
 <https://bio.tools/DiNGO> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0625,
@@ -22000,7 +17509,7 @@ DiNGO is a standalone application based on open source code from BiNGO a Java ba
     sc:url "https://www.vin.bg.ac.rs/180/tools/DiNGO.php" .
 
 <https://bio.tools/DiVenn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0602,
@@ -22024,22 +17533,8 @@ DiNGO is a standalone application based on open source code from BiNGO a Java ba
         "Yinbing Ge",
         "Zach Robinson" .
 
-<https://bio.tools/Diabetic_Retinopathy> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3382,
-        edam:topic_3393,
-        edam:topic_3417,
-        edam:topic_3474 ;
-    sc:citation <https://doi.org/10.1101/823260> ;
-    sc:description """Towards implementation of AI in New Zealand national screening program.
-
-Identify signs of diabetic retinopathy in eye images.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'CNN', 'Towards implementation AI New Zealand national screening program', 'CNNs', 'post-training'""" ;
-    sc:name "Diabetic Retinopathy" ;
-    sc:url "https://www.kaggle.com/c/diabetic-retinopathy-detection/data" .
-
 <https://bio.tools/DiagnoProt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3474,
@@ -22057,39 +17552,8 @@ Identify signs of diabetic retinopathy in eye images.
     sc:url "http://patternlabforproteomics.org/diagnoprot/" ;
     biotools:primaryContact "André R.F Silva" .
 
-<https://bio.tools/DianaWeb> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_2640,
-        edam:topic_3305 ;
-    sc:citation <https://doi.org/10.7417/CT.2020.2190>,
-        "pubmed:31850486" ;
-    sc:description """the DianaWeb study to prevent breast cancer recurrences.
-
-ISCRIVITI IL TUO CONTRIBUTO E' IMPORTANTE.
-
-DIANAWEB: articolo del SOLE 24 ORE. 16 dicembre 2019.
-
-Studio clinico per saggiare l’ipotesi che il nuovo stile di vita possa ridurre.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'E-Coaching'""" ;
-    sc:name "DianaWeb" ;
-    sc:url "http://www.dianaweb.org/" .
-
-<https://bio.tools/DictionarySquared> a sc:SoftwareApplication ;
-    sc:citation <https://doi.org/10.1044/2019_LSHSS-VOIA-18-0143>,
-        "pubmed:31600471" ;
-    sc:description """Development of an Individualized, Web-Based, Vocabulary Instruction Program.
-
-Purpose Improving vocabulary knowledge is important for many adolescents, but there are few evidence-based vocabulary instruction programs available for high school students. The purpose of this article is to describe the iterative development of the DictionarySquared research platform, a web-based vocabulary program that provides individualized vocabulary instruction, and to report the results of 2 pilot studies examining the feasibility of implementation and potential effectiveness with high school students. Method We describe our theory of change and 5 phases of iterative development. In Phases 1 and 2, we evaluated the initial implementation of DictionarySquared and revised the instructional materials.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'Accelerating Adolescent Vocabulary Growth', 'vocabulary', 'individualized'""" ;
-    sc:featureList edam:operation_3454 ;
-    sc:name "DictionarySquared" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31600471" .
-
 <https://bio.tools/DiffAtOnce> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0593 ;
     sc:description "Software package able to obtain quantitative self-diffusion data in a very straightforward manner allowing the calculation of radii including different molecular models which is not only restricted to spheres." ;
@@ -22102,7 +17566,7 @@ Purpose Improving vocabulary knowledge is important for many adolescents, but th
     sc:url "http://www.diffatonce.com/" .
 
 <https://bio.tools/DiffExpress> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3308,
@@ -22126,21 +17590,8 @@ Purpose Improving vocabulary knowledge is important for many adolescents, but th
     biotools:primaryContact "Cintia C. Palu",
         "Paul Walsh" .
 
-<https://bio.tools/Diffeomorphic> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_2640,
-        edam:topic_3306,
-        edam:topic_3444 ;
-    sc:citation <https://doi.org/10.1093/NEUONC/NOY139.093>,
-        "pmcid:PMC6144466" ;
-    sc:description "> LOW CONFIDENCE! | > HOMEPAGE BROKEN! | > CORRECT NAME OF TOOL COULD ALSO BE 'P)arametric', 'TTFields', 'TTField', 'Stupp' | P01.051 Imaging based analysis of changes in grey and white matter in glioblastoma patients treated with tumor treating fields | AbstractBackgroundAfter a positive randomized clinical trial showing significant survival benefits, Tumor Treating Fields (TTFields) have been implemented in the management of newly diagnosed glioblastoma (GBM). Biophysical modeling of TTField application has demonstrated a heterogeneous electric field distribution within the intracranial space, reaching maximal intensities at tissue borders with different electric conductivity. However, no imaging modality is available to visualize the impact of TTField treatment within the tumor and the bordering normal brain in each individual patient" ;
-    sc:featureList edam:operation_0417,
-        edam:operation_3206,
-        edam:operation_3207 ;
-    sc:name "D(iffeomorphic" ;
-    sc:url "http://ic.oup.com" .
-
 <https://bio.tools/DigChem> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_2640,
@@ -22162,7 +17613,7 @@ Purpose Improving vocabulary knowledge is important for many adolescents, but th
     biotools:primaryContact <https://orcid.org/0000-0003-2389-7183> .
 
 <https://bio.tools/DigestiFlow> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_2229 ;
     sc:citation <https://doi.org/10.7287/PEERJ.PREPRINTS.27717> ;
@@ -22178,26 +17629,8 @@ Purpose Improving vocabulary knowledge is important for many adolescents, but th
     sc:url "https://github.com/bihealth/digestiflow-server" ;
     biotools:primaryContact "Manuel Holtgrewe" .
 
-<https://bio.tools/DigestiFlow_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_2229,
-        edam:topic_3071,
-        edam:topic_3168 ;
-    sc:citation <https://doi.org/10.7287/PEERJ.PREPRINTS.27717V4> ;
-    sc:description """from BCL to FASTQ with ease.
-
-Management raw sequencing data and its preprocessing (conversion into sequences and demultiplexing) remains a challenging topic for groups running sequencing devices. They face many challenges in such efforts and solutions ranging from manual management of spreadsheets to very complex and customized LIMS systems handling much more than just sequencing raw data. In this manuscript, we describe the software package DigestiFlow that focuses on the management of Illumina flow cell sample sheets and raw data. It allows for automated extraction of information from flow cell data and management of sample sheets. Furthermore, it allows for the automated and reproducible conversion of Illumina base calls to sequences and the demultiplexing thereof using bcl2fastq and Picard Tools, followed by quality control report generation.
-
-||| HOMEPAGE MISSING!.
-
-||| NAME EQUAL TO (PUB. DIFFERENT) bio.tools/DigestiFlow""" ;
-    sc:featureList edam:operation_0233,
-        edam:operation_3185,
-        edam:operation_3218 ;
-    sc:name "DigestiFlow_autogenerated" ;
-    sc:url "https://doi.org/10.7287/PEERJ.PREPRINTS.27717V4" .
-
 <https://bio.tools/Digitaldlsorter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0804,
         edam:topic_2640,
@@ -22223,7 +17656,7 @@ conda create env -n digitalDLSorter""" ;
     sc:url "https://github.com/cartof/digitalDLSorter" .
 
 <https://bio.tools/DisCVR> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3174,
         edam:topic_3305,
@@ -22238,7 +17671,7 @@ conda create env -n digitalDLSorter""" ;
     sc:url "https://bioinformatics.cvr.ac.uk/software/discvr/" .
 
 <https://bio.tools/DisConICA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3360,
         edam:topic_3384,
@@ -22258,34 +17691,8 @@ conda create env -n digitalDLSorter""" ;
         "1.01.2" ;
     sc:url "https://bitbucket.org/masauburn/disconica/src/master/" .
 
-<https://bio.tools/DisGeNET_knowledge_platform_disease_genomics> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0102,
-        edam:topic_0625,
-        edam:topic_0634,
-        edam:topic_3063,
-        edam:topic_3335 ;
-    sc:citation <https://doi.org/10.1093/NAR/GKZ1021>,
-        "pubmed:31680165" ;
-    sc:description """The DisGeNET knowledge platform for disease genomics.
-
-a database of gene-disease associations.
-
-DisGeNET is a discovery platform containing one of the largest publicly available collections of genes and variants associated to human diseases (Piñero et al., 2019; Piñero et al., 2016; Piñero et al., 2015).
-
-The current version of DisGeNET (v6.0) contains 628,685 gene-disease associations (GDAs), between 17,549 genes and 24,166 diseases, disorders, traits, and clinical or abnormal human phenotypes, and 210,498 variant-disease associations (VDAs), between 117,337 variants and 10,358 diseases, traits, and phenotypes.
-
-||| COMMON LINK WITH (PUB. & NAME DIFFERENT) bio.tools/disgenet (DISGENET.ORG ; DISGENET.ORG/downloads).
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'DisGeNET' (bio.tools/disgenet)""" ;
-    sc:featureList edam:operation_2421,
-        edam:operation_2422,
-        edam:operation_3196 ;
-    sc:name "DisGeNET knowledge platform disease genomics" ;
-    sc:softwareHelp <http://www.disgenet.org/api/> ;
-    sc:url "http://www.disgenet.org/" .
-
 <https://bio.tools/DisV-HPV16> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3170,
@@ -22304,7 +17711,7 @@ The current version of DisGeNET (v6.0) contains 628,685 gene-disease association
     sc:url "https://github.com/ybq1204/DisV-HPV16" .
 
 <https://bio.tools/DiscoRhythm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0091,
@@ -22325,7 +17732,7 @@ DiscoRhythm is available as a web application or an R/Bioconductor package for e
     sc:url "https://disco.camh.ca" .
 
 <https://bio.tools/DiscoverSL> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0602,
@@ -22345,7 +17752,7 @@ DiscoRhythm is available as a web application or an R/Bioconductor package for e
     sc:url "https://github.com/shaoli86/DiscoverSL/releases/tag/V1.0" .
 
 <https://bio.tools/DiscoverY> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0654,
@@ -22362,7 +17769,7 @@ DiscoRhythm is available as a web application or an R/Bioconductor package for e
     sc:url "https://github.com/makovalab-psu/DiscoverY" .
 
 <https://bio.tools/Disentangling_sRNA-Seq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
         edam:topic_0659,
@@ -22379,7 +17786,7 @@ DiscoRhythm is available as a web application or an R/Bioconductor package for e
     sc:url "https://github.com/ObedRamirez/Disentangling-sRNA-Seq" .
 
 <https://bio.tools/DistAA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0154,
@@ -22396,7 +17803,7 @@ Three-dimensional structure of a protein chain is determined by its amino acid i
     sc:url "http://andromeda.matf.bg.ac.rs/aadis_dynamic/" .
 
 <https://bio.tools/Divergence> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3174,
@@ -22411,22 +17818,22 @@ Three-dimensional structure of a protein chain is determined by its amino acid i
 
 <https://bio.tools/DiversityAgents> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2526" ;
-            sc:name "Text data" ;
-            sc:sameAs "http://edamontology.org/data_2526" ],
+            sc:additionalType "http://edamontology.org/data_0842" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Identifier" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0842" ;
-            sc:name "Identifier" ;
-            sc:sameAs "http://edamontology.org/data_0842" ] ;
+            sc:additionalType "http://edamontology.org/data_2526" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Text data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2526" ;
-            sc:name "Text data" ;
-            sc:sameAs "http://edamontology.org/data_2526" ],
+            sc:additionalType "http://edamontology.org/data_0842" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Identifier" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0842" ;
-            sc:name "Identifier" ;
-            sc:sameAs "http://edamontology.org/data_0842" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2526" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Text data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3071 ;
@@ -22445,26 +17852,27 @@ Three-dimensional structure of a protein chain is determined by its amino acid i
 
 <https://bio.tools/DiversityCollection> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3736" ;
-            sc:name "Ecological data" ;
-            sc:sameAs "http://edamontology.org/data_3736" ],
+            sc:additionalType "http://edamontology.org/data_3707" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Biodiversity data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3707" ;
-            sc:name "Biodiversity data" ;
-            sc:sameAs "http://edamontology.org/data_3707" ] ;
+            sc:additionalType "http://edamontology.org/data_3736" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Ecological data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3736" ;
-            sc:name "Ecological data" ;
-            sc:sameAs "http://edamontology.org/data_3736" ],
+            sc:additionalType "http://edamontology.org/data_3736" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Ecological data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3707" ;
-            sc:name "Biodiversity data" ;
-            sc:sameAs "http://edamontology.org/data_3707" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3707" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Biodiversity data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0780,
+        edam:topic_3050,
         edam:topic_3071,
         edam:topic_3299,
         edam:topic_3301,
@@ -22494,32 +17902,33 @@ Three-dimensional structure of a protein chain is determined by its amino acid i
 
 <https://bio.tools/DiversityDescriptions> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3736" ;
-            sc:name "Ecological data" ;
-            sc:sameAs "http://edamontology.org/data_3736" ],
+            sc:additionalType "http://edamontology.org/data_3108" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Experimental measurement" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3707" ;
-            sc:name "Biodiversity data" ;
-            sc:sameAs "http://edamontology.org/data_3707" ],
+            sc:additionalType "http://edamontology.org/data_3707" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Biodiversity data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3108" ;
-            sc:name "Experimental measurement" ;
-            sc:sameAs "http://edamontology.org/data_3108" ] ;
+            sc:additionalType "http://edamontology.org/data_3736" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Ecological data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3108" ;
-            sc:name "Experimental measurement" ;
-            sc:sameAs "http://edamontology.org/data_3108" ],
+            sc:additionalType "http://edamontology.org/data_3707" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Biodiversity data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3736" ;
-            sc:name "Ecological data" ;
-            sc:sameAs "http://edamontology.org/data_3736" ],
+            sc:additionalType "http://edamontology.org/data_3736" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Ecological data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3707" ;
-            sc:name "Biodiversity data" ;
-            sc:sameAs "http://edamontology.org/data_3707" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3108" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Experimental measurement" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0610,
+        edam:topic_3050,
         edam:topic_3070,
         edam:topic_3071,
         edam:topic_3391,
@@ -22547,18 +17956,18 @@ Three-dimensional structure of a protein chain is determined by its amino acid i
 
 <https://bio.tools/DiversityExsiccatae> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2526" ;
-            sc:name "Text data" ;
-            sc:sameAs "http://edamontology.org/data_2526" ] ;
+            sc:additionalType "http://edamontology.org/data_2526" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Text data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0842" ;
-            sc:name "Identifier" ;
-            sc:sameAs "http://edamontology.org/data_0842" ],
+            sc:additionalType "http://edamontology.org/data_0842" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Identifier" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2526" ;
-            sc:name "Text data" ;
-            sc:sameAs "http://edamontology.org/data_2526" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2526" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Text data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Desktop application",
         "Web service" ;
@@ -22583,30 +17992,30 @@ Three-dimensional structure of a protein chain is determined by its amino acid i
 
 <https://bio.tools/DiversityGazetteers> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2353" ;
-            sc:name "Ontology data" ;
-            sc:sameAs "http://edamontology.org/data_2353" ],
+            sc:additionalType "http://edamontology.org/data_1274" ;
+            sc:encodingFormat "http://edamontology.org/format_2333" ;
+            sc:name "Map" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2526" ;
-            sc:name "Text data" ;
-            sc:sameAs "http://edamontology.org/data_2526" ],
+            sc:additionalType "http://edamontology.org/data_2353" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Ontology data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1274" ;
-            sc:name "Map" ;
-            sc:sameAs "http://edamontology.org/data_1274" ] ;
+            sc:additionalType "http://edamontology.org/data_2526" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Text data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2353" ;
-            sc:name "Ontology data" ;
-            sc:sameAs "http://edamontology.org/data_2353" ],
+            sc:additionalType "http://edamontology.org/data_1274" ;
+            sc:encodingFormat "http://edamontology.org/format_2333" ;
+            sc:name "Map" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2526" ;
-            sc:name "Text data" ;
-            sc:sameAs "http://edamontology.org/data_2526" ],
+            sc:additionalType "http://edamontology.org/data_2353" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Ontology data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1274" ;
-            sc:name "Map" ;
-            sc:sameAs "http://edamontology.org/data_1274" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2526" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Text data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3071,
         edam:topic_3855 ;
@@ -22627,22 +18036,22 @@ Three-dimensional structure of a protein chain is determined by its amino acid i
 
 <https://bio.tools/DiversityImageInspector> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ],
+            sc:additionalType "http://edamontology.org/data_2526" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Text data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2526" ;
-            sc:name "Text data" ;
-            sc:sameAs "http://edamontology.org/data_2526" ] ;
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_2350" ;
+            sc:name "Image" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3671" ;
-            sc:name "Text" ;
-            sc:sameAs "http://edamontology.org/data_3671" ],
+            sc:additionalType "http://edamontology.org/data_3671" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Text" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0842" ;
-            sc:name "Identifier" ;
-            sc:sameAs "http://edamontology.org/data_0842" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0842" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Identifier" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3071 ;
@@ -22661,33 +18070,34 @@ Three-dimensional structure of a protein chain is determined by its amino acid i
 
 <https://bio.tools/DiversityMobile> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3707" ;
-            sc:name "Biodiversity data" ;
-            sc:sameAs "http://edamontology.org/data_3707" ],
+            sc:additionalType "http://edamontology.org/data_3736" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Ecological data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3736" ;
-            sc:name "Ecological data" ;
-            sc:sameAs "http://edamontology.org/data_3736" ],
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3579" ;
+            sc:name "Image" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ] ;
+            sc:additionalType "http://edamontology.org/data_3707" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Biodiversity data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3707" ;
-            sc:name "Biodiversity data" ;
-            sc:sameAs "http://edamontology.org/data_3707" ],
+            sc:additionalType "http://edamontology.org/data_3707" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Biodiversity data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ],
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3579" ;
+            sc:name "Image" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3736" ;
-            sc:name "Ecological data" ;
-            sc:sameAs "http://edamontology.org/data_3736" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3736" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Ecological data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API",
         "Web service" ;
-    sc:applicationSubCategory edam:topic_3070,
+    sc:applicationSubCategory edam:topic_3050,
+        edam:topic_3070,
         edam:topic_3071 ;
     sc:author "University of Bayreuth, Chair of Databases and Information Systems" ;
     sc:contributor "Universität Bayreuth, Department of Mycology" ;
@@ -22705,22 +18115,22 @@ Three-dimensional structure of a protein chain is determined by its amino acid i
 
 <https://bio.tools/DiversityProjects> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0842" ;
-            sc:name "Identifier" ;
-            sc:sameAs "http://edamontology.org/data_0842" ],
+            sc:additionalType "http://edamontology.org/data_0842" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Identifier" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2526" ;
-            sc:name "Text data" ;
-            sc:sameAs "http://edamontology.org/data_2526" ] ;
+            sc:additionalType "http://edamontology.org/data_2526" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Text data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0842" ;
-            sc:name "Identifier" ;
-            sc:sameAs "http://edamontology.org/data_0842" ],
+            sc:additionalType "http://edamontology.org/data_0842" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Identifier" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2526" ;
-            sc:name "Text data" ;
-            sc:sameAs "http://edamontology.org/data_2526" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2526" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Text data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Web service" ;
     sc:applicationSubCategory edam:topic_3070,
@@ -22742,14 +18152,14 @@ Three-dimensional structure of a protein chain is determined by its amino acid i
 
 <https://bio.tools/DiversityReferences> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2526" ;
-            sc:name "Text data" ;
-            sc:sameAs "http://edamontology.org/data_2526" ] ;
+            sc:additionalType "http://edamontology.org/data_2526" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Text data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2526" ;
-            sc:name "Text data" ;
-            sc:sameAs "http://edamontology.org/data_2526" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2526" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Text data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3068,
         edam:topic_3070,
@@ -22770,14 +18180,14 @@ Three-dimensional structure of a protein chain is determined by its amino acid i
 
 <https://bio.tools/DiversitySamplingPlots> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3736" ;
-            sc:name "Ecological data" ;
-            sc:sameAs "http://edamontology.org/data_3736" ] ;
+            sc:additionalType "http://edamontology.org/data_3736" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Ecological data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3736" ;
-            sc:name "Ecological data" ;
-            sc:sameAs "http://edamontology.org/data_3736" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3736" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Ecological data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3071,
         edam:topic_3855 ;
@@ -22797,22 +18207,22 @@ Three-dimensional structure of a protein chain is determined by its amino acid i
 
 <https://bio.tools/DiversityScientificTerms> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2526" ;
-            sc:name "Text data" ;
-            sc:sameAs "http://edamontology.org/data_2526" ],
+            sc:additionalType "http://edamontology.org/data_2353" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Ontology data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2353" ;
-            sc:name "Ontology data" ;
-            sc:sameAs "http://edamontology.org/data_2353" ] ;
+            sc:additionalType "http://edamontology.org/data_2526" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Text data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2526" ;
-            sc:name "Text data" ;
-            sc:sameAs "http://edamontology.org/data_2526" ],
+            sc:additionalType "http://edamontology.org/data_2526" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Text data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2353" ;
-            sc:name "Ontology data" ;
-            sc:sameAs "http://edamontology.org/data_2353" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2353" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Ontology data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_3070,
@@ -22836,14 +18246,14 @@ Three-dimensional structure of a protein chain is determined by its amino acid i
 
 <https://bio.tools/DiversityTaxonNames> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3028" ;
-            sc:name "Taxonomy" ;
-            sc:sameAs "http://edamontology.org/data_3028" ] ;
+            sc:additionalType "http://edamontology.org/data_3028" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Taxonomy" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3028" ;
-            sc:name "Taxonomy" ;
-            sc:sameAs "http://edamontology.org/data_3028" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3028" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Taxonomy" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Web API",
         "Web service" ;
@@ -22869,14 +18279,14 @@ Three-dimensional structure of a protein chain is determined by its amino acid i
 
 <https://bio.tools/Diversity_GIS_Editor> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1274" ;
-            sc:name "Map" ;
-            sc:sameAs "http://edamontology.org/data_1274" ] ;
+            sc:additionalType "http://edamontology.org/data_1274" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Map" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1274" ;
-            sc:name "Map" ;
-            sc:sameAs "http://edamontology.org/data_1274" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1274" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Map" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_3071,
@@ -22897,7 +18307,7 @@ Three-dimensional structure of a protein chain is determined by its amino acid i
     biotools:primaryContact <https://orcid.org/0000-0003-1980-3148> .
 
 <https://bio.tools/Diversity_Workbench> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_3068,
@@ -22928,7 +18338,7 @@ Three-dimensional structure of a protein chain is determined by its amino acid i
     biotools:primaryContact <https://orcid.org/0000-0003-1980-3148> .
 
 <https://bio.tools/Dizzy-Beats> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_2259,
         edam:topic_3068 ;
@@ -22945,7 +18355,7 @@ Three-dimensional structure of a protein chain is determined by its amino acid i
     biotools:primaryContact "Stuart Aitken" .
 
 <https://bio.tools/Dmipy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3068,
@@ -22970,7 +18380,7 @@ The Dmipy software package facilitates the reproducible estimation of diffusion
     sc:url "https://github.com/AthenaEPI/dmipy" .
 
 <https://bio.tools/DoGNet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0611,
         edam:topic_3385,
@@ -22991,7 +18401,7 @@ The Dmipy software package facilitates the reproducible estimation of diffusion
     biotools:primaryContact <https://orcid.org/0000-0002-4264-8572> .
 
 <https://bio.tools/Doc2Hpo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0218,
@@ -23015,26 +18425,8 @@ The Dmipy software package facilitates the reproducible estimation of diffusion
     biotools:primaryContact <https://orcid.org/0000-0002-9624-0214>,
         "Kai Wang" .
 
-<https://bio.tools/DocMF> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0128,
-        edam:topic_0160,
-        edam:topic_3169,
-        edam:topic_3179,
-        edam:topic_3676 ;
-    sc:citation <https://doi.org/10.1101/827428> ;
-    sc:description """a High-Throughput Method to Profile Different Types of Protein-DNA Interactions.
-
-ABSTRACT DNA-protein interactions play pivotal roles in many cellular activities, such as replication, development, and DNA repair. Here we report a DNB-based on-chip Motif Finding (DocMF) system that utilizes next-generation-sequencing chips to profile protein binding or cleaving activity toward several hundred millions or billions of DNA sequences. Using DocMF, we successfully identified a variety of endonuclease recognition sites and the protospacer-adjacent motif (PAM) sequences of different CRISPR effector proteins. Compared with the widely used PAM depletion assay, our DocMF platform can simultaneously screen both 5’ and 3’ sequences adjacent to the protospacer to identify PAMs with high coverage using the same DNB library pool.
-
-||| HOMEPAGE MISSING!""" ;
-    sc:featureList edam:operation_0239,
-        edam:operation_3092,
-        edam:operation_3900 ;
-    sc:name "DocMF" ;
-    sc:url "https://doi.org/10.1101/827428" .
-
 <https://bio.tools/DockBox> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2275,
@@ -23053,7 +18445,7 @@ DockBox is a python wrapper library designed to facilitate the use of standard d
     sc:url "https://pypi.org/project/dockbox" .
 
 <https://bio.tools/DockThor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0154,
@@ -23067,7 +18459,7 @@ DockBox is a python wrapper library designed to facilitate the use of standard d
     sc:url "https://dockthor.lncc.br/v2/" .
 
 <https://bio.tools/Docker4Circ> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_3053 ;
     sc:citation <https://doi.org/10.3390/IJMS21010293>,
@@ -23084,7 +18476,7 @@ Bioinformatics Project (RBP, http://reproducible-bioinformatics.org/).""" ;
     sc:url "https://github.com/kendomaniac/docker4seq" .
 
 <https://bio.tools/Domainoid> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0084,
@@ -23104,7 +18496,7 @@ BACKGROUND:Orthology inference is normally based on full-length protein sequence
     sc:url "https://bitbucket.org/sonnhammergroup/domainoid/" .
 
 <https://bio.tools/Dominance_Sharing_Assessment> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3474,
         edam:topic_3500,
         edam:topic_3679 ;
@@ -23119,14 +18511,14 @@ Animals use a wide variety of strategies to reduce or avoid aggression in confli
 
 <https://bio.tools/DoubletDetection> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3112" ;
-            sc:name "Gene expression matrix" ;
-            sc:sameAs "http://edamontology.org/data_3112" ] ;
+            sc:additionalType "http://edamontology.org/data_3112" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Gene expression matrix" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3308,
         edam:topic_3572 ;
@@ -23143,7 +18535,7 @@ Animals use a wide variety of strategies to reduce or avoid aggression in confli
     sc:url "https://github.com/JonathanShor/DoubletDetection" .
 
 <https://bio.tools/DrDiff> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0593,
         edam:topic_3318,
         edam:topic_3892 ;
@@ -23156,7 +18548,7 @@ Animals use a wide variety of strategies to reduce or avoid aggression in confli
     sc:url "https://github.com/ronaldolab/DrDiff" .
 
 <https://bio.tools/DrLLPS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0601,
@@ -23177,24 +18569,8 @@ Phase separation, or liquid-liquid phase separation (LLPS), is a ubiquitous and
     sc:softwareHelp <http://llps.biocuckoo.cn/guide.php> ;
     sc:url "http://llps.biocuckoo.cn/" .
 
-<https://bio.tools/DrOn> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0089,
-        edam:topic_3300,
-        edam:topic_3343 ;
-    sc:citation <https://doi.org/10.1186/S12859-019-3192-8>,
-        "pmcid:PMC6927112",
-        "pubmed:31865907" ;
-    sc:description """Enhancing the drug ontology with semantically-rich representations of National Drug Codes and RxNorm unique concept identifiers.
-
-BACKGROUND:The Drug Ontology (DrOn) is a modular, extensible ontology of drug products, their ingredients, and their biological activity created to enable comparative effectiveness and health services researchers to query National Drug Codes (NDCs) that represent products by ingredient, by molecular disposition, by therapeutic disposition, and by physiological effect (e.g., diuretic). It is based on the RxNorm drug terminology maintained by the U. S. National Library of Medicine, and on the Chemical Entities of Biological Interest ontology. Both national drug codes (NDCs) and RxNorm unique concept identifiers (RXCUIS) can undergo changes over time that can obfuscate their meaning when these identifiers occur in historic data""" ;
-    sc:featureList edam:operation_2422,
-        edam:operation_3096,
-        edam:operation_3359 ;
-    sc:name "DrOn" ;
-    sc:url "http://purl.org/dron/identifiers/dron-identifiers.owl" .
-
 <https://bio.tools/DrawGlycan-SNFG> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0154,
@@ -23218,27 +18594,8 @@ If you use this software, please cite: Cheng, K. et al., 'DrawGlycan-SNFG: a rob
     sc:softwareHelp <http://virtualglycome.org/DrawGlycan/DrawGlycanSNFG2_Manual.pdf> ;
     sc:url "https://virtualglycome.org/drawglycan" .
 
-<https://bio.tools/Drc> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0128,
-        edam:topic_0154,
-        edam:topic_0749,
-        edam:topic_3512,
-        edam:topic_3557 ;
-    sc:citation <https://doi.org/10.1093/NAR/GKZ1048>,
-        "pubmed:31724707" ;
-    sc:description """structurally novel ssDNA-binding transcription regulator of N4-related bacterial viruses.
-
-Bacterial viruses encode a vast number of ORFan genes that lack similarity to any other known proteins. Here, we present a 2.20 Å crystal structure of N4-related Pseudomonas virus LUZ7 ORFan gp14, and elucidate its function. We demonstrate that gp14, termed here as Drc (ssDNA-binding RNA Polymerase Cofactor), preferentially binds single-stranded DNA, yet contains a structural fold distinct from other ssDNA-binding proteins (SSBs). By comparison with other SSB folds and creation of truncation and amino acid substitution mutants, we provide the first evidence for the binding mechanism of this unique fold. From a biological perspective, Drc interacts with the phage-encoded RNA Polymerase complex (RNAPII), implying a functional role as an SSB required for the transition from early to middle gene transcription during phage infection.
-
-||| HOMEPAGE MISSING!""" ;
-    sc:featureList edam:operation_0279,
-        edam:operation_0303,
-        edam:operation_3454 ;
-    sc:name "Drc" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31724707" .
-
 <https://bio.tools/DriverDBv3> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0199,
@@ -23255,7 +18612,7 @@ Bacterial viruses encode a vast number of ORFan genes that lack similarity to an
     sc:url "http://ngs.ym.edu.tw/driverdb" .
 
 <https://bio.tools/DriverSub> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0634,
         edam:topic_2640,
@@ -23277,7 +18634,7 @@ After the raw data are loaded, the script ./GenerateInputData.m with function ./
     sc:url "https://github.com/JianingXi/DriverSub" .
 
 <https://bio.tools/DrugComb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0605,
@@ -23302,7 +18659,7 @@ After the raw data are loaded, the script ./GenerateInputData.m with function ./
     biotools:primaryContact <https://orcid.org/0000-0001-7480-7710> .
 
 <https://bio.tools/DrugCombDB> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web API" ;
     sc:applicationSubCategory edam:topic_0154,
@@ -23321,7 +18678,7 @@ After the raw data are loaded, the script ./GenerateInputData.m with function ./
     sc:url "http://drugcombdb.denglab.org/" .
 
 <https://bio.tools/DrugR> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
@@ -23346,7 +18703,7 @@ After the raw data are loaded, the script ./GenerateInputData.m with function ./
         "Yosef Masoudi-Sobhanzadeh" .
 
 <https://bio.tools/Drug_ReposER> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0209,
@@ -23369,7 +18726,7 @@ After the raw data are loaded, the script ./GenerateInputData.m with function ./
     biotools:primaryContact <https://orcid.org/0000-0003-4275-4663> .
 
 <https://bio.tools/Drug_Targets> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0209,
@@ -23384,7 +18741,7 @@ After the raw data are loaded, the script ./GenerateInputData.m with function ./
     sc:url "http://drugtargets.insight-centre.org" .
 
 <https://bio.tools/DstarM> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3304 ;
     sc:citation <https://doi.org/10.3758/S13428-019-01249-7>,
@@ -23402,7 +18759,7 @@ After the raw data are loaded, the script ./GenerateInputData.m with function ./
     biotools:primaryContact "Don van den Bergh" .
 
 <https://bio.tools/Dsuite> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Suite" ;
     sc:applicationSubCategory edam:topic_0084,
@@ -23423,7 +18780,7 @@ After the raw data are loaded, the script ./GenerateInputData.m with function ./
     biotools:primaryContact "Milan Malinsky" .
 
 <https://bio.tools/DupGen_finder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0194,
         edam:topic_0780,
@@ -23442,7 +18799,7 @@ After the raw data are loaded, the script ./GenerateInputData.m with function ./
     biotools:primaryContact "Xin Qiao" .
 
 <https://bio.tools/Dwarna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:author <https://orcid.org/0000-0001-5452-5548> ;
     sc:description "Dwarna ('about us' in Maltese) is a blockchain-based dynamic consent application for biobanking. The application, which is served through a WordPress plugin, uses a Hyperledger Fabric blockchain, through Hyperledger Composer, to store research participants' consent changes. In this way, the blockchain stores an immutable consent trail. The application contains functionality to manage research studies, research participants and researchers in WordPress." ;
@@ -23452,20 +18809,8 @@ After the raw data are loaded, the script ./GenerateInputData.m with function ./
     sc:softwareHelp <https://github.com/NicholasMamo/dwarna> ;
     sc:url "https://github.com/NicholasMamo/dwarna" .
 
-<https://bio.tools/DxCG> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3063,
-        edam:topic_3384,
-        edam:topic_3474 ;
-    sc:citation <https://doi.org/10.1080/13696998.2019.1666854>,
-        "pubmed:31505982" ;
-    sc:description "> MEDIUM CONFIDENCE! | > CORRECT NAME OF TOOL COULD ALSO BE 'BCBSLA', 'DxCG risk-score', 'risk-score', 'member-specific' | Evaluating the performance of a predictive modeling approach to identifying members at high-risk of hospitalization | The evolution of DxCG, the gold standard in risk adjustment and predictive modeling | Our white paper explores how DxCG risk-based predictive modeling has transformed the way healthcare is evaluated, delivered, and paid for, leading the way for value-based care initiatives across the country" ;
-    sc:featureList edam:operation_3557,
-        edam:operation_3891 ;
-    sc:name "DxCG" ;
-    sc:url "https://resources.cotiviti.com/white-paper/the-evolution-of-dxcg" .
-
 <https://bio.tools/DyNeuSR> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3304,
         edam:topic_3384,
@@ -23480,7 +18825,7 @@ After the raw data are loaded, the script ./GenerateInputData.m with function ./
     sc:url "https://braindynamicslab.github.io/dyneusr/" .
 
 <https://bio.tools/DynOVis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3173 ;
@@ -23494,7 +18839,7 @@ After the raw data are loaded, the script ./GenerateInputData.m with function ./
     sc:url "https://tjmkuijpers.shinyapps.io/dynovistool/" .
 
 <https://bio.tools/DynaStI> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0153,
         edam:topic_3172,
@@ -23516,7 +18861,7 @@ After the raw data are loaded, the script ./GenerateInputData.m with function ./
     biotools:primaryContact <https://orcid.org/0000-0003-3669-6313> .
 
 <https://bio.tools/Dynalogo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -23543,7 +18888,7 @@ Please import your dataset or dowlnoad the sample dataset""" ;
     sc:url "https://dynalogo.cam.uchc.edu" .
 
 <https://bio.tools/Dynamic_Meta-Storms> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0637,
         edam:topic_3174,
@@ -23562,7 +18907,7 @@ Dynamic Meta-Storms calculates comprehensive taxonomic and phylogenetic distance
     sc:url "https://github.com/qibebt-bioinfo/dynamic-meta-storms" .
 
 <https://bio.tools/Dysdera> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0749,
@@ -23579,7 +18924,7 @@ Dynamic Meta-Storms calculates comprehensive taxonomic and phylogenetic distance
     sc:url "https://github.com/molevol-ub/Dysdera_silvatica_genome" .
 
 <https://bio.tools/E-Flow> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0114,
         edam:topic_0121,
@@ -23603,69 +18948,8 @@ This package has been designed to process FCM data by removing non viable cells,
     sc:name "E-Flow" ;
     sc:url "https://github.com/vanNimwegenLab/E-Flow" .
 
-<https://bio.tools/E-HIP> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3263 ;
-    sc:citation <https://doi.org/10.3390/S19224921>,
-        "pmcid:PMC6891635",
-        "pubmed:31726675" ;
-    sc:description """An Energy-Efficient OpenHIP-Based Security in Internet of Things Networks.
-
-4-way hand-shake protocol that provides mobility enhanced with security, in particular authentication and authorisation.
-
-http://homebase.htt-consult.com/ hip/.
-
-key -- generated using the HIP_Trans and DH.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'OpenHIP', 'OpenHIP-Based', 'HIP'""" ;
-    sc:name "E-HIP" ;
-    sc:url "http://www.avispa-project.org/library/hip.html" .
-
-<https://bio.tools/E-TOKEN> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0610,
-        edam:topic_3304,
-        edam:topic_3318 ;
-    sc:citation <https://doi.org/10.1101/849505> ;
-    sc:description """Detecting Behavioral Patterns for Diagnosis and Rehabilitation of Visual Neglect.
-
-ABSTRACT Visual neglect is a frequent and disabling consequence of right brain damage. Traditional paper- and-pencil tests of neglect have limitations in sensitivity and ecological validity. The Baking Tray Task (BTT), instead, approaches real-life situations, because it requires participants to place 16 physical objects on a board. The number of objects placed on the left and right portions of the board provides a clinical index of visual neglect. Here we present E-TOKEN, a technology-enhanced https: www.overleaf.com project 5dc6d9c64de4e60001116764 version of the BTT. E-TOKEN automatically determines the object locations on the board, and also records the sequence and timing of their placement.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'technology-enhanced', 'Detecting Behavioral Patterns Diagnosis Rehabilitation Visual Neglect', 'E-TOKEN technology-enhanced', 'BTT'""" ;
-    sc:featureList edam:operation_0337 ;
-    sc:name "E-TOKEN" ;
-    sc:url "https://doi.org/10.1101/849505" .
-
-<https://bio.tools/E14> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0202,
-        edam:topic_3375,
-        edam:topic_3377,
-        edam:topic_3379 ;
-    sc:citation <https://doi.org/10.1007/S10928-019-09662-3>,
-        "pubmed:31667657" ;
-    sc:description """Cardiac risk assessment based on early Phase I data and PK-QTc analysis is concordant with the outcome of thorough QTc trials.
-
-Cardiac safety assessment is a key regulatory requirement for almost all new drugs. Until recently, one evaluation aspect was via a specifically designated, expensive, and resource intensive thorough QTc study, and a by-time-point analysis using an intersection-union test (IUT). ICH E14 Q&A (R3) (http: www.ich.org fileadmin Public_Web_Site ICH_Products Guidelines Efficacy E14 E14_Q_As_R3__Step4.pdf) allows for analysis of the PK-QTc relationship using early Phase I data to assess QTc liability.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'ICH', 'QTc', 'thorough QTc', 'Cardiac risk assessment based early Phase I data PK-QTc analysis concordant outcome thorough QTc ...'""" ;
-    sc:featureList edam:operation_3435,
-        edam:operation_3454 ;
-    sc:name "E14" ;
-    sc:url "http://www.ich.org/fileadmin/Public_Web_Site/ICH_Products/Guidelines/Efficacy/E14/E14_Q_As_R3__Step4.pdf" .
-
-<https://bio.tools/EAGLE_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0602,
-        edam:topic_0749,
-        edam:topic_3295 ;
-    sc:citation <https://doi.org/10.1101/781427> ;
-    sc:description "> NAME EQUAL TO (PUB. DIFFERENT) bio.tools/eagle_gxe | > NAME (EAGLE) SIMILAR TO (PUB. DIFFERENT) bio.tools/eagle (Eagle) | an algorithm that utilizes a small number of genomic features to predict tissue/cell type-specific enhancer-gene interactions | Enhancer And Gene Learning Ensemble method | EAGLE: an algorithm that utilizes small number of genomic features to predict tissue/cell type specific enhancer-gene interactions | EAGLE used all six features only derived from the enhancers and gene expression datasets, without providing more information like histone modification, methylation or other enhancer-gene (EG) detection datasets" ;
-    sc:featureList edam:operation_0438,
-        edam:operation_3501 ;
-    sc:name "EAGLE_autogenerated" ;
-    sc:url "https://github.com/EvansGao/EAGLE" .
-
 <https://bio.tools/EAT-Rice> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3474,
@@ -23688,7 +18972,7 @@ Cardiac safety assessment is a key regulatory requirement for almost all new dru
     biotools:primaryContact <https://orcid.org/0000-0002-5525-4011> .
 
 <https://bio.tools/EBIC> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3068,
         edam:topic_3295,
@@ -23705,32 +18989,20 @@ Cardiac safety assessment is a key regulatory requirement for almost all new dru
     biotools:primaryContact "Jason H. Moore",
         "Patryk Orzechowski" .
 
-<https://bio.tools/ECHO_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0602,
-        edam:topic_3070,
-        edam:topic_3407 ;
-    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTZ617>,
-        "pubmed:31384918" ;
-    sc:description "> NAME EQUAL TO (PUB. DIFFERENT) bio.tools/echo | an Application for Detection and Analysis of Oscillators Identifies Metabolic Regulation on Genome-Wide Circadian Output | An application to find and visualize circadian rhythms in time course data using extended harmonic oscillators | Finding Rhythms Using Extended Circadian Harmonic Oscillators (ECHO) | Provides a function (echo_find()) designed to find rhythms from data using extended harmonic oscillators. For more information, see H. De los Santos et al. (2017) <doi:10.1145/3107411.3107420>  | This is the first step in the PAICE (Pipeline for Amplitude Integration of Circadian Exploration) Suite! This suite of tools provides high-throughput applications for circadian, ultradian, and infradian rhythms | ECHO (Extended Circadian Harmonic Oscillators) is an R-powered application designed to find and visualize circadian rhythms from your data using extended harmonic oscillators | Use and First-Time Set-Up Instructions" ;
-    sc:featureList edam:operation_1812 ;
-    sc:license "MIT" ;
-    sc:name "ECHO_autogenerated" ;
-    sc:url "https://github.com/delosh653/ECHO" .
-
 <https://bio.tools/ECLAIR> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3112" ;
-            sc:name "Gene expression matrix" ;
-            sc:sameAs "http://edamontology.org/data_3112" ] ;
+            sc:additionalType "http://edamontology.org/data_3112" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Gene expression matrix" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3768" ;
-            sc:name "Clustered expression profiles" ;
-            sc:sameAs "http://edamontology.org/data_3768" ],
+            sc:additionalType "http://edamontology.org/data_3768" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "Clustered expression profiles" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3508" ;
+            sc:name "Image" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3308 ;
     sc:citation <https://doi.org/10.1093/nar/gkw452>,
@@ -23749,7 +19021,7 @@ Cardiac safety assessment is a key regulatory requirement for almost all new dru
     sc:url "https://github.com/GGiecold/ECLAIR" .
 
 <https://bio.tools/ECMarker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0634,
@@ -23769,7 +19041,7 @@ Abstract Gene expression and regulation, a key molecular mechanism driving human
     sc:url "https://github.com/daifengwanglab/ECMarker" .
 
 <https://bio.tools/ECOTOOL> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3068 ;
@@ -23785,7 +19057,7 @@ Abstract Gene expression and regulation, a key molecular mechanism driving human
     sc:url "https://github.com/djpt999/ECOTOOL" .
 
 <https://bio.tools/EDCluster> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0194,
@@ -23804,7 +19076,7 @@ Abstract Gene expression and regulation, a key molecular mechanism driving human
     sc:url "https://github.com/dschrempf/edcluster" .
 
 <https://bio.tools/EDTA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0749,
@@ -23822,7 +19094,7 @@ Abstract Gene expression and regulation, a key molecular mechanism driving human
     sc:url "https://github.com/oushujun/EDTA" .
 
 <https://bio.tools/EEG> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3304 ;
     sc:citation <https://doi.org/10.3390/s19040772>,
         "pmcid:PMC6413114",
@@ -23832,7 +19104,7 @@ Abstract Gene expression and regulation, a key molecular mechanism driving human
     sc:url "http://openeeg.sourceforge.net/" .
 
 <https://bio.tools/EEGMIR> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3334 ;
     sc:description "Prototype neurofeedback application." ;
@@ -23845,7 +19117,7 @@ Abstract Gene expression and regulation, a key molecular mechanism driving human
     biotools:primaryContact "Jim Peters" .
 
 <https://bio.tools/EEGSourceSim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3334 ;
     sc:citation <https://doi.org/10.1016/J.JNEUMETH.2019.108377>,
         "pmcid:PMC6815881",
@@ -23856,7 +19128,7 @@ License either MIT or GLP-2.0""" ;
     sc:url "https://github.com/svndl/EEGSourceSim" .
 
 <https://bio.tools/EFI> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
@@ -23870,7 +19142,7 @@ License either MIT or GLP-2.0""" ;
     sc:url "https://efi.igb.illinois.edu/" .
 
 <https://bio.tools/EK-DRD> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3336,
@@ -23884,7 +19156,7 @@ License either MIT or GLP-2.0""" ;
     sc:url "http://www.idruglab.com/drd/index.php" .
 
 <https://bio.tools/ELASPIC> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "Ensemble Learning Approach for Stability Prediction of Interface and Core mutations." ;
     sc:featureList edam:operation_0250,
         edam:operation_0331,
@@ -23894,7 +19166,7 @@ License either MIT or GLP-2.0""" ;
     sc:url "http://elaspic.kimlab.org" .
 
 <https://bio.tools/ELIMU-MDx> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0607,
         edam:topic_3324,
@@ -23912,7 +19184,7 @@ License either MIT or GLP-2.0""" ;
     sc:url "https://sparclex.github.io/elimu" .
 
 <https://bio.tools/EM-DAT> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0610,
@@ -23932,7 +19204,7 @@ In 1988, the Centre for Research on the Epidemiology of Disasters (CRED) launche
     sc:url "https://www.emdat.be/" .
 
 <https://bio.tools/EMBL2checklists> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0780,
@@ -23954,25 +19226,8 @@ In 1988, the Centre for Research on the Epidemiology of Disasters (CRED) launche
     sc:url "https://github.com/michaelgruenstaeudl/EMBL2checklists" ;
     biotools:primaryContact "Michael Gruenstaeudl" .
 
-<https://bio.tools/EMPOP> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0199,
-        edam:topic_3293,
-        edam:topic_3489 ;
-    sc:citation <https://doi.org/10.1016/J.FSIGEN.2019.102202>,
-        "pubmed:31775077" ;
-    sc:description """Forensic data from a mixed West African sample, Côte d'Ivoire (Ivory Coast), and Rwanda.
-
-In total, the EMPOP Release 13 holds 48,572 quality-controlled mitotypes with at least HVS-I variation (16024-16365). Thereof,.
-
-The EMPOP project and database arose from collaborative studies that were established and discussed at scientific meetings. We continue this tradition to inspire and facilitate research""" ;
-    sc:featureList edam:operation_2421,
-        edam:operation_2428,
-        edam:operation_3894 ;
-    sc:name "EMPOP" ;
-    sc:url "https://empop.online" .
-
 <https://bio.tools/EMULSION> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3305,
         edam:topic_3324,
@@ -23986,45 +19241,8 @@ The EMPOP project and database arose from collaborative studies that were establ
     sc:softwareHelp <https://sourcesup.renater.fr/www/emulsion-public/pages/Install.html> ;
     sc:url "https://sourcesup.renater.fr/www/emulsion-public" .
 
-<https://bio.tools/ENCODE> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0621,
-        edam:topic_0622,
-        edam:topic_0654,
-        edam:topic_3277,
-        edam:topic_3474 ;
-    sc:citation <https://doi.org/10.1093/NAR/GKZ1062>,
-        "pubmed:31713622" ;
-    sc:description """New developments on the Encyclopedia of DNA Elements (ENCODE) data portal.
-
-Encyclopedia of DNA Elements – ENCODE.
-
-Encyclopedia of DNA Elements (ENCODE).
-
-ENCODE: Encyclopedia of DNA Elements.
-
-About ENCODE ProjectGetting StartedExperiments.
-
-bioinformatics biology deep learning genetic genomic life sciences machine learning.
-
-Enter search terms to filter the annotations included in the matrix.
-
-The Encyclopedia of DNA Elements (ENCODE) Consortium is an international collaboration of research groups funded by the National Human Genome Research Institute (NHGRI).
-
-Enter search terms to filter the experiments included in the matrix.
-
-ENCODE Consortium Analysis Working Group.
-
-||| COMMON LINK WITH (PUB. & NAME DIFFERENT) bio.tools/encode_dcc (ENCODEPROJECT.ORG)""" ;
-    sc:featureList edam:operation_0441,
-        edam:operation_0525,
-        edam:operation_2421,
-        edam:operation_3196,
-        edam:operation_3695 ;
-    sc:name "ENCODE" ;
-    sc:url "https://www.encodeproject.org/" .
-
 <https://bio.tools/ENdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0219,
         edam:topic_0749,
@@ -24041,7 +19259,7 @@ ENCODE Consortium Analysis Working Group.
     sc:url "http://www.licpathway.net/ENdb" .
 
 <https://bio.tools/EPA-ng> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3174,
         edam:topic_3293,
@@ -24061,37 +19279,8 @@ ENCODE Consortium Analysis Working Group.
     sc:url "https://github.com/Pbdas/epa-ng" ;
     biotools:primaryContact "Pierre Barbera" .
 
-<https://bio.tools/EPD_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0621,
-        edam:topic_0659,
-        edam:topic_0749,
-        edam:topic_3169,
-        edam:topic_3500 ;
-    sc:citation <https://doi.org/10.1093/NAR/GKZ1014>,
-        "pubmed:31680159" ;
-    sc:description """enhanced data visualization and extension to ncRNA promoters.
-
-EPD The Eukaryotic Promoter Database.
-
-2019-04-26 -- First EPDnew release of non-coding RNA promoter collection for H. sapiens.
-
-Swiss Institute of Bioinformatics.
-
-This resource allows the access to several databases of experimentally validated promoters: EPD and EPDnew databases.
-
-||| NAME EQUAL TO (PUB. DIFFERENT) bio.tools/epd.
-
-||| COMMON LINK WITH (PUB. & NAME DIFFERENT) bio.tools/webprinses (EPFL.CH), bio.tools/tuberculist (EPFL.CH), bio.tools/psychoprot (EPFL.CH), bio.tools/cgdnaweb (EPFL.CH), bio.tools/lapmix (EPFL.CH).
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'EPD 2020'""" ;
-    sc:featureList edam:operation_0224,
-        edam:operation_0337,
-        edam:operation_0440 ;
-    sc:name "EPD_autogenerated" ;
-    sc:url "https://epd.epfl.ch" .
-
 <https://bio.tools/EPEE> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0749,
@@ -24111,25 +19300,8 @@ This resource allows the access to several databases of experimentally validated
     sc:url "https://github.com/Cobanoglu-Lab/EPEE" ;
     biotools:primaryContact "Murat Can Çobanoğlu" .
 
-<https://bio.tools/EPGA-SC> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0196,
-        edam:topic_3168,
-        edam:topic_3678 ;
-    sc:citation <https://doi.org/10.1109/TCBB.2019.2945761>,
-        "pubmed:31603794" ;
-    sc:description """A framework for de novo assembly of single-cell sequencing reads.
-
-Assembling genomes from single-cell sequencing data is essential for single-cell studies. However, single-cell assemblies are challenging due to (i) the highly non-uniform read coverage and (ii) the elevated levels of sequencing errors and chimeric reads. In this study, we present a new framework called EPGA-SC for de novo assembly of single-cell sequencing reads. The EPGA assembler has designed strategies to solve the problems caused by sequencing errors, sequencing biases and repetitive regions. However, the extremely unbalanced and richer error types prevent EPGA to achieve high performance in single-cell sequencing data. In this study, we designed EPGA-SC based on EPGA.
-
-||| HOMEPAGE MISSING!""" ;
-    sc:featureList edam:operation_0524,
-        edam:operation_0525,
-        edam:operation_3644 ;
-    sc:name "EPGA-SC" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31603794" .
-
 <https://bio.tools/EPI-peptide_designer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2830,
@@ -24150,7 +19322,7 @@ Assembling genomes from single-cell sequencing data is essential for single-cell
     biotools:primaryContact "Viart Benjamin" .
 
 <https://bio.tools/EPIC-TABSAT> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3173,
         edam:topic_3518,
@@ -24174,7 +19346,7 @@ Assembling genomes from single-cell sequencing data is essential for single-cell
         "Stephan Pabinger" .
 
 <https://bio.tools/EPIFANY> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -24194,7 +19366,7 @@ Assembling genomes from single-cell sequencing data is essential for single-cell
     sc:url "https://OpenMS.de/epifany" .
 
 <https://bio.tools/EPIGENE> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Script" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -24220,7 +19392,7 @@ The network is funded by the Canadian Institutes of Health Research (CIHR) and G
     sc:url "https://github.com/imbbLab/EPIGENE" .
 
 <https://bio.tools/EPIP> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Script" ;
     sc:applicationSubCategory edam:topic_0102,
@@ -24236,7 +19408,7 @@ The network is funded by the Canadian Institutes of Health Research (CIHR) and G
     sc:url "http://www.cs.ucf.edu/~xiaoman/EPIP/" .
 
 <https://bio.tools/EPIVAN> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3168,
         edam:topic_3474 ;
@@ -24253,7 +19425,7 @@ EPIVAN is a new deep learning method that enables predicting long-range EPIs usi
     sc:url "https://github.com/hzy95/EPIVAN" .
 
 <https://bio.tools/ERINS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0625,
         edam:topic_3168 ;
@@ -24269,7 +19441,7 @@ Next generation sequencing technology has led to the development of methods for
     sc:url "https://github.com/BDanalysis/ERINS" .
 
 <https://bio.tools/EROS-DOCK> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2275,
         edam:topic_3318 ;
     sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTZ434>,
@@ -24286,21 +19458,8 @@ Next generation sequencing technology has led to the development of methods for
     sc:url "http://erosdock.loria.fr" ;
     biotools:primaryContact "Isaure Chauvot de Beauchêne" .
 
-<https://bio.tools/ES> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3315,
-        edam:topic_3322,
-        edam:topic_3403 ;
-    sc:citation <https://doi.org/10.1186/S40635-019-0262-1>,
-        "pmcid:PMC6701711",
-        "pubmed:31428882" ;
-    sc:description "> LOW CONFIDENCE! | > CORRECT NAME OF TOOL COULD ALSO BE 'effective shunt', 'ES should', 'equation standard' | Predictive validity of a novel non-invasive estimation of effective shunt fraction in critically ill patients | Baillie & Bretherick, 2018. Presented as is with no guarantees | Enter an ABG to calculate the effective shunt (ES)- an intuitive measure of pulmonary oxygenation calculated using assumed values for key variables including VO2 and cardiac ouput (Q). This equation summarises the effective shunt approach:" ;
-    sc:featureList edam:operation_0446,
-        edam:operation_3799 ;
-    sc:name "ES" ;
-    sc:url "http://baillielab.net/es" .
-
 <https://bio.tools/ETI> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3168,
         edam:topic_3399 ;
@@ -24315,7 +19474,7 @@ Next generation sequencing technology has led to the development of methods for
     sc:url "https://hiv.biozentrum.unibas.ch/ETI/" .
 
 <https://bio.tools/ETM-DB> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_3403,
         edam:topic_3407,
@@ -24329,83 +19488,8 @@ Next generation sequencing technology has led to the development of methods for
     sc:name "ETM-DB" ;
     sc:url "http://biosoft.kaist.ac.kr/etm" .
 
-<https://bio.tools/ETNA> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0089,
-        edam:topic_3303,
-        edam:topic_3378,
-        edam:topic_3379,
-        edam:topic_3393 ;
-    sc:citation <https://doi.org/10.1002/CLC.23279>,
-        "pmcid:PMC6906985",
-        "pubmed:31650560" ;
-    sc:description """The global Edoxaban Treatment in routine cliNical prActice (ETNA) noninterventional study program.
-
-BACKGROUND:Randomized controlled trials showed the nonvitamin K oral anticoagulant (NOAC) edoxaban was effective and safe for stroke and systemic embolism prevention in nonvalvular atrial fibrillation (AF) and for the prevention and treatment of venous thromboembolism (VTE; including pulmonary embolism and deep vein thrombosis). Additional research is needed to evaluate the effects of edoxaban in routine clinical practice. Therefore, the Edoxaban Treatment in routine cliNical prActice (ETNA) program is being conducted to provide routine clinical care data on characteristics and outcomes in patients with AF or VTE receiving edoxaban.
-
-||| HOMEPAGE MISSING!""" ;
-    sc:name "ETNA" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31650560" .
-
-<https://bio.tools/EUFEMED> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3303,
-        edam:topic_3360,
-        edam:topic_3373,
-        edam:topic_3375,
-        edam:topic_3379 ;
-    sc:citation <https://doi.org/10.3389/FPHAR.2019.01377>,
-        "pmcid:PMC6897335",
-        "pubmed:31849649" ;
-    sc:description """European Federation for Exploratory Medicines Development Lyon Conference 2019.
-
-Download presentations of the Lyon conference 2019.
-
-European Federation for Exploratory Medicines Development.
-
-Presentations by invited Speakers and Oral Presenters Our speakers and oral presenters delivered some very compelling and thought provoking presentations at the EUFEMED 2019 conference and we’re pleased to be… Read More.
-
-Eufemed - European Federation for Exploratory Medicines Development - consulted for revision of European regulations & guidelines related to clinical drug development.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'European Federation Exploratory Medicines Development Lyon Conference 2019'""" ;
-    sc:featureList edam:operation_2426,
-        edam:operation_3283,
-        edam:operation_3454 ;
-    sc:name "EUFEMED" ;
-    sc:softwareHelp <https://www.eufemed.eu/wp-content/uploads/EUFEMED-Final-Programme-and-Abstract-Book.pdf> ;
-    sc:url "https://www.eufemed.eu/download-presentations-of-the-lyon-conference-2019/" .
-
-<https://bio.tools/EURO-FIGS> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0634,
-        edam:topic_3067,
-        edam:topic_3382,
-        edam:topic_3412,
-        edam:topic_3421 ;
-    sc:citation <https://doi.org/10.1007/S00464-019-07157-3>,
-        "pubmed:31591654" ;
-    sc:description """preliminary results from the IHU-IRCAD-EAES EURO-FIGS registry.
-
-Login – European Fluorescence Imaging Guided Surgery.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'Fluorescence-based cholangiography', 'METHODS:EURO-FIGS', 'ICG dose timing NIRF-C', 'NIRF-C'""" ;
-    sc:featureList edam:operation_0337,
-        edam:operation_3283 ;
-    sc:name "EURO-FIGS" ;
-    sc:url "http://www.euro-figs.eu" .
-
-<https://bio.tools/EURO-HEALTHY> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0749,
-        edam:topic_3305,
-        edam:topic_3376 ;
-    sc:citation <https://doi.org/10.1186/S12963-019-0188-6>,
-        "pmcid:PMC6686464",
-        "pubmed:31391120" ;
-    sc:description "> LOW CONFIDENCE! | > CORRECT NAME OF TOOL COULD ALSO BE 'indicators' | Evaluation of data availability on population health indicators at the regional level across the European Union | Welcome to the eurohealthydata portal! | This portal aggregates the data collected within the scope of the Project EURO-HEALTHY – Shaping EUROpean policies to promote HEALTH equitY, coordinated by the Centre of Studies for Geography and Spatial Planning (CEGOT) at the University of Coimbra and funded by the European Union’s Horizon 2020 research and innovation programme under grant agreement number 643398. Access to this portal is protected and subject to authorization" ;
-    sc:featureList edam:operation_3435,
-        edam:operation_3436 ;
-    sc:name "EURO-HEALTHY" ;
-    sc:url "http://www.eurohealthydata.uc.pt" .
-
 <https://bio.tools/EVE> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_3382,
         edam:topic_3855 ;
@@ -24417,7 +19501,7 @@ Login – European Fluorescence Imaging Guided Surgery.
     sc:url "https://github.com/vishhvaan/eve-pi" .
 
 <https://bio.tools/EVR> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0621,
@@ -24434,7 +19518,7 @@ Login – European Fluorescence Imaging Guided Surgery.
     sc:url "https://github.com/mbglab/EVR" .
 
 <https://bio.tools/EVcouplings> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -24458,7 +19542,7 @@ Predict protein structure, function and mutations using evolutionary sequence co
     sc:url "https://evcouplings.org/" .
 
 <https://bio.tools/EVlncRNA-pred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_0780,
@@ -24478,7 +19562,7 @@ Predict protein structure, function and mutations using evolutionary sequence co
         "Yaoqi Zhou" .
 
 <https://bio.tools/EWAS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0625,
@@ -24501,7 +19585,7 @@ Predict protein structure, function and mutations using evolutionary sequence co
         "Yongshuai Jiang" .
 
 <https://bio.tools/EWAS_Data_Hub> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Bioinformatics portal" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0654,
@@ -24519,7 +19603,7 @@ Predict protein structure, function and mutations using evolutionary sequence co
     sc:url "https://bigd.big.ac.cn/ewas/datahub" .
 
 <https://bio.tools/EWCA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0128,
@@ -24534,19 +19618,8 @@ Predict protein structure, function and mutations using evolutionary sequence co
     sc:name "EWCA" ;
     sc:url "https://github.com/RongquanWang/EWCA" .
 
-<https://bio.tools/EXABCal> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0749,
-        edam:topic_3318,
-        edam:topic_3375 ;
-    sc:citation <https://doi.org/10.1016/J.HELIYON.2019.E02017>,
-        "pmcid:PMC6639690",
-        "pubmed:31360782" ;
-    sc:description "> MEDIUM CONFIDENCE! | > HOMEPAGE MISSING! | > CORRECT NAME OF TOOL COULD ALSO BE 'photon', 'buildup' | A program for calculating photon exposure and energy absorption buildup factors | This research presents a new Windows compatible program (EXABCal) for photon exposure and energy absorption buildup factors for standard energy grid from 0.015- 15 MeV for elements, mixtures and compound. This program was written using Python programming language and the calculation of buildup factors was based on the well-known Geometric Progression (GP) fitting procedure. The equivalent atomic numbers and GP fitting parameters of mixtures and compounds can also be evaluated using this program" ;
-    sc:name "EXABCal" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31360782" .
-
 <https://bio.tools/EXPANDER> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3170,
@@ -24567,7 +19640,7 @@ Predict protein structure, function and mutations using evolutionary sequence co
     sc:url "http://acgt.cs.tau.ac.il/expander/" .
 
 <https://bio.tools/Easy-HLA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0625,
@@ -24591,7 +19664,7 @@ HLA-Upgrade uses the power of haplotypes to predict full high resolution HLA-A,
     sc:url "https://hla.univ-nantes.fr" .
 
 <https://bio.tools/EasyMEG> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3382 ;
     sc:citation <https://doi.org/10.1016/J.CMPB.2019.105199>,
@@ -24606,7 +19679,7 @@ You can use the editor on GitHub to maintain and preview the content for your we
     sc:url "https://tonywu2018.github.io/EasyMEG/" .
 
 <https://bio.tools/EasyModel> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2259,
@@ -24622,7 +19695,7 @@ You can use the editor on GitHub to maintain and preview the content for your we
     sc:url "https://easymodel.udl.cat" .
 
 <https://bio.tools/EcRBPome> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -24646,7 +19719,7 @@ You can use the editor on GitHub to maintain and preview the content for your we
     biotools:primaryContact <https://orcid.org/0000-0002-6642-2367> .
 
 <https://bio.tools/EcoPrestMet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0202,
         edam:topic_3172,
@@ -24666,7 +19739,7 @@ You can use the editor on GitHub to maintain and preview the content for your we
     biotools:primaryContact "Mattia Zampieri" .
 
 <https://bio.tools/EdgeScaping> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -24683,7 +19756,7 @@ You can use the editor on GitHub to maintain and preview the content for your we
     sc:url "https://github.com/bhusain/EdgeScaping" .
 
 <https://bio.tools/El-MAVEN> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3172,
@@ -24701,7 +19774,7 @@ You can use the editor on GitHub to maintain and preview the content for your we
     sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31119671" .
 
 <https://bio.tools/Electric_Guru> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3334 ;
     sc:description "Program for neurofeedback that supports modularEEG. Uses fast Fourier transform to extract frequency bands from the raw signal." ;
@@ -24711,7 +19784,7 @@ You can use the editor on GitHub to maintain and preview the content for your we
     sc:url "https://realization.org/old/page/topics/electric_guru.htm" .
 
 <https://bio.tools/ElemCor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3407,
@@ -24733,32 +19806,8 @@ You can use the editor on GitHub to maintain and preview the content for your we
     biotools:primaryContact "Di Du",
         "Xiaoyang Su" .
 
-<https://bio.tools/Elemental> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3318,
-        edam:topic_3855 ;
-    sc:citation <https://doi.org/10.3390/S19184017>,
-        "pmcid:PMC6767676",
-        "pubmed:31540360" ;
-    sc:description "> LOW CONFIDENCE! | > HOMEPAGE MISSING! | An Open-Source Wireless Hardware and Software Platform for Building Energy and Indoor Environmental Monitoring and Control | This work demonstrates an open-source hardware and software platform for monitoring the performance of buildings, called Elemental, that is designed to provide data on indoor environmental quality, energy usage, HVAC operation, and other factors to its users. It combines: (i) custom printed circuit boards (PCBs) with RFM69 frequency shift keying (FSK) radio frequency (RF) transceivers for wireless sensors, control nodes, and USB gateway, (ii) a Raspberry Pi 3B with custom firmware acting as either a centralized or distributed backhaul, and (iii) a custom dockerized application for the backend called Brood that serves as the director software managing message brokering via Message Queuing Telemetry Transport (MQTT) protocol using VerneMQ, database storage using InfluxDB, and data visualization using Grafana" ;
-    sc:name "Elemental" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31540360" .
-
-<https://bio.tools/Ellipse_packing_two-dimensional_celltessellation> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0108,
-        edam:topic_2229 ;
-    sc:citation <https://doi.org/10.7287/PEERJ.PREPRINTS.27421V3> ;
-    sc:description """A theoretical explanation for Lewis’s law and Aboav-Weaire’s law.
-
-Background: Lewis’s law and Aboav-Weaire’s law are two fundamental laws used to describe the topology of two-dimensional (2D) structures; however, their theoretical bases remain unclear. Methods: We used R package Conicfit software to fit ellipses based on the geometric parameters of polygonal cells with ten different kinds of natural and artificial 2D structures. Results: Our results indicated that the cells could be classified as ellipse’s inscribed polygon (EIP) and that they tended to form ellipse’s maximal inscribed polygon (EMIP). This phenomenon was named as ellipse packing. On the basis of the number of cell edges, cell area, and semi-axes of fitted ellipses, we derived and verified new relations of Lewis’s law and Aboav-Weaire’s law.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'ellipse', 'packing', 'ellipse packing', 'Conicfit'""" ;
-    sc:name "Ellipse packing two-dimensional celltessellation" ;
-    sc:url "https://doi.org/10.7287/PEERJ.PREPRINTS.27421V3" .
-
 <https://bio.tools/Emap2sec> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0736,
         edam:topic_3382,
@@ -24774,19 +19823,8 @@ Background: Lewis’s law and Aboav-Weaire’s law are two fundamental laws used
     sc:name "Emap2sec" ;
     sc:url "http://www.kiharalab.org/emap2sec/index.html" .
 
-<https://bio.tools/Embeddings> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0218,
-        edam:topic_3474 ;
-    sc:citation <https://doi.org/10.1016/J.DIB.2019.104432>,
-        "pmcid:PMC6736772",
-        "pubmed:31516953" ;
-    sc:description "> VERY_LOW CONFIDENCE! | > CORRECT NAME OF TOOL COULD ALSO BE 'Lastra-Diaz', 'Chirigati', 'HESML', 'word-similarity' | Reproducibility dataset for a large experimental survey on word embeddings and ontology-based methods for word similarity | Symmetric Pattern Based Word Embeddings for Improved Word Similarity Prediction | In proceedings of CoNLL 2015 (long paper) | We present a novel word level vector representation based on symmetric patterns (SPs)" ;
-    sc:featureList edam:operation_3436 ;
-    sc:name "Embeddings" ;
-    sc:url "https://homes.cs.washington.edu/~roysch/papers/sp_embeddings/sp_embeddings.html" .
-
 <https://bio.tools/EnClaSC> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3308,
@@ -24801,7 +19839,7 @@ Background: Lewis’s law and Aboav-Weaire’s law are two fundamental laws used
     sc:url "https://github.com/xy-chen16/EnClaSC" .
 
 <https://bio.tools/EnImpute> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_3474 ;
@@ -24821,7 +19859,7 @@ Background: Lewis’s law and Aboav-Weaire’s law are two fundamental laws used
     biotools:primaryContact "Xiao-Fei Zhang" .
 
 <https://bio.tools/EnTAP> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0621,
@@ -24842,26 +19880,26 @@ Background: Lewis’s law and Aboav-Weaire’s law are two fundamental laws used
 
 <https://bio.tools/EncyclopeDIA> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0850" ;
-            sc:name "Sequence set" ;
-            sc:sameAs "http://edamontology.org/data_0850" ],
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3246" ;
+            sc:name "Mass spectrometry spectra" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ],
+            sc:additionalType "http://edamontology.org/data_0850" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence set" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3621" ;
+            sc:name "Mass spectrometry spectra" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ],
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3621" ;
+            sc:name "Mass spectrometry spectra" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_3245" ;
+            sc:name "Peptide identification" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -24885,7 +19923,7 @@ Background: Lewis’s law and Aboav-Weaire’s law are two fundamental laws used
     biotools:primaryContact "Brian Searle" .
 
 <https://bio.tools/EnhancerDB> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web API",
         "Web application" ;
@@ -24909,7 +19947,7 @@ Background: Lewis’s law and Aboav-Weaire’s law are two fundamental laws used
     biotools:primaryContact "Z. Guo" .
 
 <https://bio.tools/Ensembl_Compara> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web API",
         "Web service" ;
@@ -24943,7 +19981,7 @@ Background: Lewis’s law and Aboav-Weaire’s law are two fundamental laws used
     sc:url "http://www.ensembl.org/info/genome/compara/index.html" .
 
 <https://bio.tools/Enspara> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0176,
         edam:topic_3318 ;
@@ -24961,7 +19999,7 @@ Background: Lewis’s law and Aboav-Weaire’s law are two fundamental laws used
     biotools:primaryContact "Bowman Lab" .
 
 <https://bio.tools/EnteroBase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3305,
@@ -24976,7 +20014,7 @@ Background: Lewis’s law and Aboav-Weaire’s law are two fundamental laws used
     sc:url "http://enterobase.warwick.ac.uk" .
 
 <https://bio.tools/Entrezpy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0602,
@@ -24996,38 +20034,14 @@ Background: Lewis’s law and Aboav-Weaire’s law are two fundamental laws used
     sc:url "https://pypi.org/project/entrezpy/" ;
     biotools:primaryContact "Jan buchmann" .
 
-<https://bio.tools/Enviromics> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0625,
-        edam:topic_3810,
-        edam:topic_3855 ;
-    sc:citation <https://doi.org/10.1101/726513> ;
-    sc:description "> MEDIUM CONFIDENCE! | > CORRECT NAME OF TOOL COULD ALSO BE 'Enviromics breeding', 'GIS-GE' | applications and perspectives on envirotypic-assisted selection | Data files used in Resende, RT et al. 2019" ;
-    sc:featureList edam:operation_3196,
-        edam:operation_3557 ;
-    sc:name "Enviromics" ;
-    sc:url "https://figshare.com/articles/Enviromics_data/8264132" .
-
-<https://bio.tools/EnzyDock> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0821,
-        edam:topic_2275,
-        edam:topic_3534 ;
-    sc:citation <https://doi.org/10.1021/ACS.JCTC.9B00366>,
-        "pubmed:31386808" ;
-    sc:description "> HOMEPAGE MISSING! | Protein-Ligand Docking of Multiple Reactive States along a Reaction Coordinate in Enzymes | Enzymes play a pivotal role in all biological systems. These biomachines are the most effective catalysts known, dramatically enhancing the rate of reactions by more than 10 orders of magnitude relative to the uncatalyzed reactions in solution. Predicting the correct, mechanistically appropriate binding modes for substrate and product, as well as all reaction intermediates and transition states, along a reaction pathway is immensely challenging and remains an unsolved problem. In the present work, we developed an effective methodology for identifying probable binding modes of multiple ligand states along a reaction coordinate in an enzyme active site" ;
-    sc:featureList edam:operation_0482,
-        edam:operation_3896,
-        edam:operation_3899 ;
-    sc:name "EnzyDock" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31386808" .
-
 <https://bio.tools/Eoulsan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "A versatile framework based on the Hadoop implementation of the MapReduce algorithm, dedicated to high throughput sequencing data analysis on distributed computers. With Eoulsan, users can easily set up a cloud computing cluster and automate the analysis of several samples at once using various software solutions available. Working either on standalone workstations or cloud computing clusters, Eoulsan provides an integrated and flexible solution for RNA-Seq data analysis of differential expression." ;
     sc:name "Eoulsan" ;
     sc:url "http://outils.genomique.biologie.ens.fr/eoulsan/" .
 
 <https://bio.tools/EphaGen> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_3168,
@@ -25043,7 +20057,7 @@ Background: Lewis’s law and Aboav-Weaire’s law are two fundamental laws used
     sc:url "https://github.com/m4merg/EphaGen" .
 
 <https://bio.tools/Epi-GTBN> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0602,
@@ -25058,7 +20072,7 @@ Background: Lewis’s law and Aboav-Weaire’s law are two fundamental laws used
     sc:url "http://122.205.95.139/Epi-GTBN/" .
 
 <https://bio.tools/EpiAlign> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_3169,
         edam:topic_3170,
@@ -25080,7 +20094,7 @@ Background: Lewis’s law and Aboav-Weaire’s law are two fundamental laws used
         "Haowen Zhang" .
 
 <https://bio.tools/EpiAlignment> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3169,
@@ -25100,7 +20114,7 @@ Background: Lewis’s law and Aboav-Weaire’s law are two fundamental laws used
     biotools:primaryContact "Sheng Zhong" .
 
 <https://bio.tools/EpiCompare> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
@@ -25122,23 +20136,8 @@ Background: Lewis’s law and Aboav-Weaire’s law are two fundamental laws used
     sc:url "https://epigenome.wustl.edu/EpiCompare/" ;
     biotools:primaryContact "Yu He" .
 
-<https://bio.tools/EpiDISH_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3295 ;
-    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTZ833>,
-        "pubmed:31710662" ;
-    sc:description """Epigenetic Dissection of Intra-Sample-Heterogeneity with online GUI.
-
-Epigenetic Dissection of Intra-Sample-Heterogeneity.
-
-||| NAME EQUAL TO (PUB. DIFFERENT) bio.tools/epidish.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'IMPLEMENTATION:EpiDISH'""" ;
-    sc:featureList edam:operation_3629 ;
-    sc:name "EpiDISH_autogenerated" ;
-    sc:url "https://www.biosino.org/EpiDISH/" .
-
 <https://bio.tools/EpiEstim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Web application" ;
     sc:applicationSubCategory edam:topic_3305,
@@ -25157,18 +20156,8 @@ This web application generates an estimate of infectious disease transmissibilit
     sc:softwareHelp <https://cran.r-project.org/web/packages/EpiEstim/EpiEstim.pdf> ;
     sc:url "https://shiny.dide.imperial.ac.uk/epiestim" .
 
-<https://bio.tools/EpiGraph_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0621,
-        edam:topic_3382 ;
-    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTZ683>,
-        "pubmed:31544932" ;
-    sc:description "> NAME (EpiGraph) SIMILAR TO (PUB. DIFFERENT) bio.tools/epigraph (EpiGRAPH) | > COMMON LINK WITH (PUB. & NAME DIFFERENT) bio.tools/imagej (IMAGEJ.NET) | an open-source platform to quantify epithelial organization | EpiGraph is a Fiji plugin that combines computational geometry and graph theory to measure the degree of arrangement in any computational or natural tessellation | The EpiGraph is a Fiji plugin that combines computational geometry and graph theory to measure the degree of arrangement in any made by computational or natural tessellation" ;
-    sc:license "GPL-3.0" ;
-    sc:name "EpiGraph_autogenerated" ;
-    sc:url "https://imagej.net/EpiGraph" .
-
 <https://bio.tools/EpiMethEx> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3295,
@@ -25187,7 +20176,7 @@ This web application generates an estimate of infectious disease transmissibilit
     sc:url "https://github.com/giupardeb/EpiMethEx" .
 
 <https://bio.tools/EpiMethylTag> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3169,
@@ -25206,7 +20195,7 @@ Activation of regulatory elements is thought to be inversely correlated with DNA
     sc:url "https://github.com/skoklab/EpiMethylTag" .
 
 <https://bio.tools/EpiProfileLite> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3295,
@@ -25229,7 +20218,7 @@ Activation of regulatory elements is thought to be inversely correlated with DNA
     biotools:primaryContact <https://orcid.org/0000-0001-9073-6641> .
 
 <https://bio.tools/EpiSAFARI> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3169,
         edam:topic_3295 ;
@@ -25243,7 +20232,7 @@ Activation of regulatory elements is thought to be inversely correlated with DNA
     sc:url "https://github.com/harmancilab/EpiSAFARI" .
 
 <https://bio.tools/EpiSmokEr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3295,
@@ -25257,22 +20246,22 @@ Activation of regulatory elements is thought to be inversely correlated with DNA
 
 <https://bio.tools/Epigenomics_Workflow_on_Galaxy_and_Jupyter> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3494" ;
-            sc:name "DNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3494" ],
+            sc:additionalType "http://edamontology.org/data_3495" ;
+            sc:encodingFormat "http://edamontology.org/format_1931" ;
+            sc:name "RNA sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3495" ;
-            sc:name "RNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3495" ] ;
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:encodingFormat "http://edamontology.org/format_1931" ;
+            sc:name "DNA sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2012" ;
-            sc:name "Sequence coordinates" ;
-            sc:sameAs "http://edamontology.org/data_2012" ],
+            sc:additionalType "http://edamontology.org/data_2012" ;
+            sc:encodingFormat "http://edamontology.org/format_3003" ;
+            sc:name "Sequence coordinates" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3112" ;
-            sc:name "Gene expression matrix" ;
-            sc:sameAs "http://edamontology.org/data_3112" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3112" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Gene expression matrix" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_3125,
         edam:topic_3173,
@@ -25288,7 +20277,7 @@ Activation of regulatory elements is thought to be inversely correlated with DNA
     sc:url "https://github.com/wilkinsonlab/epigenomics_pipeline" .
 
 <https://bio.tools/Episo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0203,
         edam:topic_3170,
@@ -25312,7 +20301,7 @@ This pakage is for estimating m5c level by using Kallisto in Episo""" ;
     sc:url "https://github.com/liujunfengtop/Episo" .
 
 <https://bio.tools/Epithelial_Modelling_Platform> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0602,
@@ -25332,26 +20321,8 @@ This pakage is for estimating m5c level by using Kallisto in Episo""" ;
     sc:url "http://epithelial-modelling-platform.nectar.auckland.ac.nz/" ;
     biotools:primaryContact "Dewan M. Sarwar" .
 
-<https://bio.tools/Epiviz> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0602,
-        edam:topic_2269,
-        edam:topic_3295,
-        edam:topic_3308 ;
-    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTZ883>,
-        "pubmed:31782758" ;
-    sc:description """Proactive Visual and Statistical Analysis of Genomic Data in Epiviz.
-
-Epiviz is an interactive visualization tool for functional genomics data. It supports genome navigation like other genome browsers, but allows multiple visualizations of data within genomic regions using scatterplots, heatmaps and other user-supplied visualizations. It also includes data from the Gene Expression Barcode project for transcriptome visualization. It has a flexible plugin framework so users can add d3 visualizations. You can see a video tour here.
-
-Epiviz is a scientific information visualization tool for genetic and epigenetic data, used to aid in the exploration and understanding of correlations between various genome features""" ;
-    sc:featureList edam:operation_0337,
-        edam:operation_2238,
-        edam:operation_3463 ;
-    sc:name "Epiviz" ;
-    sc:url "http://epiviz.github.io/" .
-
 <https://bio.tools/ErrorTracer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_2269,
@@ -25365,7 +20336,7 @@ Epiviz is a scientific information visualization tool for genetic and epigenetic
     sc:url "https://github.com/TheAngryFox/ModelExplorer" .
 
 <https://bio.tools/EuRBPDB> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Bioinformatics portal" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0121,
@@ -25382,7 +20353,7 @@ Epiviz is a scientific information visualization tool for genetic and epigenetic
     sc:url "http://EuRBPDB.syshospital.org" .
 
 <https://bio.tools/EuroForMix> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2885 ;
     sc:citation <https://doi.org/10.1016/j.fsigen.2015.11.008>,
@@ -25401,7 +20372,7 @@ Epiviz is a scientific information visualization tool for genetic and epigenetic
     sc:url "http://www.euroformix.com/" .
 
 <https://bio.tools/EventEpi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0218,
         edam:topic_3301,
@@ -25414,7 +20385,7 @@ Epiviz is a scientific information visualization tool for genetic and epigenetic
     sc:url "https://github.com/aauss/EventEpi" .
 
 <https://bio.tools/EviMass> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0218,
         edam:topic_0634,
@@ -25432,7 +20403,7 @@ Epiviz is a scientific information visualization tool for genetic and epigenetic
     sc:url "https://web.rniapps.net/evimass/evimass/index.php" .
 
 <https://bio.tools/EvidenceAggregatedDriverRanking> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0634,
         edam:topic_3517 ;
@@ -25448,13 +20419,13 @@ Epiviz is a scientific information visualization tool for genetic and epigenetic
     sc:url "https://github.com/Sage-Bionetworks/EvidenceAggregatedDriverRanking" .
 
 <https://bio.tools/EvidenceModeler> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "The EVidenceModeler (aka EVM) software combines ab intio gene predictions and protein and transcript alignments into weighted consensus gene structures. EVM provides a flexible and intuitive framework for combining diverse evidence types into a single automated gene structure annotation system." ;
     sc:name "EvidenceModeler" ;
     sc:url "https://github.com/EVidenceModeler/EVidenceModeler.github.io" .
 
 <https://bio.tools/EvoClustRNA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0097,
@@ -25476,7 +20447,7 @@ Epiviz is a scientific information visualization tool for genetic and epigenetic
     sc:url "https://github.com/mmagnus/EvoClustRNA" .
 
 <https://bio.tools/EvoEF2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0130,
@@ -25499,7 +20470,7 @@ EvoEF is a composite energy force field that contains two versions. The first ve
     sc:url "https://zhanglab.ccmb.med.umich.edu/EvoEF" .
 
 <https://bio.tools/EvoFreq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3168,
@@ -25518,10 +20489,9 @@ EvoEF is a composite energy force field that contains two versions. The first ve
 
 <https://bio.tools/EvoPPI> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1025" ;
-            sc:name "Gene identifier" ;
-            sc:sameAs "http://edamontology.org/data_1025" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1025" ;
+            sc:name "Gene identifier" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0128 ;
     sc:author <https://orcid.org/0000-0001-8749-2703>,
@@ -25538,7 +20508,7 @@ EvoEF is a composite energy force field that contains two versions. The first ve
     biotools:primaryContact <https://orcid.org/0000-0002-7139-2107> .
 
 <https://bio.tools/EvolClust> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0623,
         edam:topic_3407 ;
@@ -25551,37 +20521,15 @@ EvoEF is a composite energy force field that contains two versions. The first ve
     sc:url "http://evolclustdb.org/" .
 
 <https://bio.tools/EvryRNA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0659 ;
     sc:description "EvryRNA platform is a web server providing various algorithms and bioinformatics tools developed in the laboratory IBISC of UEVE/Genopole, and dedicated to the prediction and the analysis of non-coding RNAs (ncRNAs)." ;
     sc:name "EvryRNA" ;
     sc:url "https://evryrna.ibisc.univ-evry.fr/evryrna/evryrna/evryrna_home" .
 
-<https://bio.tools/Ex-DOMAIN> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0154,
-        edam:topic_0160,
-        edam:topic_0166,
-        edam:topic_0736,
-        edam:topic_0780 ;
-    sc:citation <https://doi.org/10.5511/PLANTBIOTECHNOLOGY.18.0418A>,
-        "pmcid:PMC6879387",
-        "pubmed:31819721" ;
-    sc:description """Efficient identification of NLR by using a genome-wide protein domain and motif survey program, Ex-DOMAIN.
-
-Genomic and amino acid sequences of organisms are freely available from various public databases. We designed a genome-wide survey program, named "Ex-DOMAIN" (exhaustive domain and motif annotator using InterProScan), of protein domains and motifs to aid in the identification and characterization of proteins by using the InterProScan sequence analysis application, which can display information and annotations of targeted proteins and genes, conserved protein domains and motifs, chromosomal locations, and structural diversities of target proteins.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'cucumber'""" ;
-    sc:featureList edam:operation_0239,
-        edam:operation_2421,
-        edam:operation_3767 ;
-    sc:name "Ex-DOMAIN" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31819721" .
-
 <https://bio.tools/ExMS2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -25602,7 +20550,7 @@ Genomic and amino acid sequences of organisms are freely available from various
     sc:url "http://hx2.med.upenn.edu/EXms/" .
 
 <https://bio.tools/ExaML> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0194,
@@ -25620,7 +20568,7 @@ Genomic and amino acid sequences of organisms are freely available from various
     biotools:primaryContact "Alexandros Stamatakis" .
 
 <https://bio.tools/ExaStoLog> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2269,
@@ -25641,7 +20589,7 @@ Abstract Motivation Solutions to stochastic Boolean models are usually estimated
     sc:url "https://github.com/sysbio-curie/exact-stoch-log-mod" .
 
 <https://bio.tools/Exautomate> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0625,
@@ -25658,7 +20606,7 @@ Abstract Motivation Solutions to stochastic Boolean models are usually estimated
     sc:url "https://github.com/exautomate/Exautomate-Core" .
 
 <https://bio.tools/ExonSkipDB> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0199,
@@ -25676,18 +20624,8 @@ Exon skipping (ES), the most common alternative splicing event, has been reporte
     sc:name "ExonSkipDB" ;
     sc:url "https://ccsm.uth.edu/ExonSkipDB/" .
 
-<https://bio.tools/Exoscore> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0089,
-        edam:topic_3399 ;
-    sc:citation <https://doi.org/10.1177/0018720819868122>,
-        "pubmed:31419179" ;
-    sc:description "> MEDIUM CONFIDENCE! | > HOMEPAGE MISSING! | > CORRECT NAME OF TOOL COULD ALSO BE 'Exoscore exoskeleton' | A Design Tool to Evaluate Factors Associated With Technology Acceptance of Soft Lower Limb Exosuits by Older Adults | OBJECTIVE:This pilot study proposed and performs initial testing with Exoscore, a design evaluation tool to assess factors related to acceptance of exoskeleton by older adults, during the technology development and testing phases. BACKGROUND:As longevity increases and our aging population continues to grow, assistive technologies such as exosuits and exoskeletons can provide enhanced quality of life and independence. Exoscore is a design and prototype stage evaluation method to assess factors related to perceptions of the technology, the aim being to optimize technology acceptance. METHOD:In this pilot study, we applied the three-phase Exoscore tool during testing with 11 older adults" ;
-    sc:featureList edam:operation_3454 ;
-    sc:name "Exoscore" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31419179" .
-
 <https://bio.tools/ExpansionHunter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2885,
@@ -25705,7 +20643,7 @@ Exon skipping (ES), the most common alternative splicing event, has been reporte
     biotools:primaryContact "Illumina Open Source Software" .
 
 <https://bio.tools/ExpansionHunter_Denovo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Suite" ;
     sc:applicationSubCategory edam:topic_0102,
@@ -25730,7 +20668,7 @@ ExpansionHunter Denovo (EHdn) is a suite of tools for detecting novel expansions
     sc:url "https://github.com/Illumina/ExpansionHunterDenovo" .
 
 <https://bio.tools/Expedition> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_3320 ;
     sc:citation <https://doi.org/10.1016/J.MOLCEL.2017.06.003> ;
@@ -25745,7 +20683,7 @@ ExpansionHunter Denovo (EHdn) is a suite of tools for detecting novel expansions
     sc:url "https://github.com/YeoLab/Expedition" .
 
 <https://bio.tools/ExploreASL> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3379,
         edam:topic_3384,
@@ -25769,7 +20707,7 @@ QUIZ: Presentation, QUIZ + IMAGES""" ;
     sc:url "http://www.ExploreASL.org" .
 
 <https://bio.tools/Exposome-Explorer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3172,
@@ -25794,14 +20732,14 @@ The database is being actively updated.""" ;
 
 <https://bio.tools/EzClermont> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0925" ;
-            sc:name "Sequence assembly" ;
-            sc:sameAs "http://edamontology.org/data_0925" ] ;
+            sc:additionalType "http://edamontology.org/data_0925" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence assembly" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3671" ;
-            sc:name "Text" ;
-            sc:sameAs "http://edamontology.org/data_3671" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3671" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Text" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:citation <https://doi.org/10.1101/317610> ;
     sc:description "Easy interface for determining the Clermont 2013 phylotype of an E.  coli isolate" ;
     sc:featureList edam:operation_3478 ;
@@ -25809,25 +20747,8 @@ The database is being actively updated.""" ;
     sc:url "http://ezclermont.hutton.ac.uk/" ;
     biotools:primaryContact <https://orcid.org/0000-0002-9035-2143> .
 
-<https://bio.tools/F3DAS> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0632,
-        edam:topic_2269,
-        edam:topic_3474 ;
-    sc:citation <https://doi.org/10.1002/ADMA.201904845>,
-        "pubmed:31608516" ;
-    sc:description """Bayesian Machine Learning in Metamaterial Design.
-
-Framework for Data-Driven Design and Analysis of Structures (F3DAS).
-
-The main code is called "STEP1_F3DAS.m". This code includes inputs that should be changed by the user when dealing with a new problem. The user typically needs to change the "generate_mesh.m" file as well, to create the parametric geometries of the structure/metamaterial that is simulated by Finite Element Analysis (FEA).
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'Bayesian Machine Learning Metamaterial Design', 'brittle', 'supercompressible', 'polymers'""" ;
-    sc:license "BSD-3-Clause" ;
-    sc:name "F3DAS" ;
-    sc:url "https://github.com/mabessa/F3DAS" .
-
 <https://bio.tools/FACEPAI> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0091,
@@ -25851,41 +20772,8 @@ Wahlberg, E. 2019. FACEPAI: a script for fast and consistent environmental DNA p
     sc:name "FACEPAI" ;
     sc:url "https://github.com/emmawahl/facepai" .
 
-<https://bio.tools/FACS_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0121,
-        edam:topic_0154,
-        edam:topic_0769,
-        edam:topic_3174,
-        edam:topic_3301 ;
-    sc:citation <https://doi.org/10.1101/2019.12.17.880385> ;
-    sc:description """antimicrobial peptide screening in genomes and metagenomes.
-
-The antimicrobial peptides prospection pipeline.
-
-Fast AMP Classification System: Predict AMPs in (meta)genomes and peptides.
-
-FACS pipeline - Fast AMP Classification System.
-
-FACS: antimicrobial peptide screening in genomes and metagenomes Celio Dias Santos-Junior, Shaojun Pan, Xing-Ming Zhao, Luis Pedro Coelho bioRxiv 2019.12.17.880385; doi: https://doi.org/10.1101/2019.12.17.880385.
-
-bioinformatics genomics biology metagenomics ngless peptide.
-
-Fast AMP Clustering System pipeline was benchmarked using the set of scripts available in this repository.
-
-||| NAME EQUAL TO (PUB. DIFFERENT) bio.tools/facs.
-
-||| COMMON LINK WITH (PUB. & NAME DIFFERENT) bio.tools/pymzml (GITHUB.COM)""" ;
-    sc:featureList edam:operation_0252,
-        edam:operation_0310,
-        edam:operation_0418,
-        edam:operation_0436,
-        edam:operation_3211 ;
-    sc:license "MIT" ;
-    sc:name "FACS_autogenerated" ;
-    sc:url "http://big-data-biology.org/software/facs" .
-
 <https://bio.tools/FAConstructor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3315,
         edam:topic_3382 ;
     sc:citation <https://doi.org/10.1007/S11548-019-02053-6>,
@@ -25897,7 +20785,7 @@ Fast AMP Clustering System pipeline was benchmarked using the set of scripts ava
     sc:url "https://github.com/3d-pli/FAConstructor" .
 
 <https://bio.tools/FAIR> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_3070,
         edam:topic_3518 ;
@@ -25912,18 +20800,18 @@ Fast AMP Clustering System pipeline was benchmarked using the set of scripts ava
 
 <https://bio.tools/FAIRDataPoint> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2526" ;
-            sc:name "Text data" ;
-            sc:sameAs "http://edamontology.org/data_2526" ] ;
+            sc:additionalType "http://edamontology.org/data_2526" ;
+            sc:encodingFormat "http://edamontology.org/format_3256" ;
+            sc:name "Text data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2526" ;
-            sc:name "Text data" ;
-            sc:sameAs "http://edamontology.org/data_2526" ],
+            sc:additionalType "http://edamontology.org/data_2526" ;
+            sc:encodingFormat "http://edamontology.org/format_3956" ;
+            sc:name "Text data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2526" ;
-            sc:name "Text data" ;
-            sc:sameAs "http://edamontology.org/data_2526" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2526" ;
+            sc:encodingFormat "http://edamontology.org/format_3256" ;
+            sc:name "Text data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0089,
@@ -25948,7 +20836,7 @@ Fast AMP Clustering System pipeline was benchmarked using the set of scripts ava
         <https://orcid.org/0000-0002-1215-167X> .
 
 <https://bio.tools/FAIR_Data_tools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:description "The Data FAIRport includes FAIRifier and Metadata Editor (to create), FAIR Data Point (to publish), FAIR Search Engine (to find), ORKA (to annotate) FAIR data descriptions." ;
@@ -25957,7 +20845,7 @@ Fast AMP Clustering System pipeline was benchmarked using the set of scripts ava
     biotools:primaryContact "Rob Hooft" .
 
 <https://bio.tools/FAIR_Search_Engine> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3077 ;
     sc:description "FAIR search engine, designed as a prototype for finding FAIR resources." ;
@@ -25966,23 +20854,8 @@ Fast AMP Clustering System pipeline was benchmarked using the set of scripts ava
     sc:name "FAIR Search Engine" ;
     sc:url "https://fairtraining.fair-dtls.surf-hosted.nl/search/" .
 
-<https://bio.tools/FAIR_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0089,
-        edam:topic_3489,
-        edam:topic_3571 ;
-    sc:citation <https://doi.org/10.1038/S41597-019-0184-5>,
-        "pmcid:PMC6754447",
-        "pubmed:31541130" ;
-    sc:description "> VERY_LOW CONFIDENCE! | > COMMON LINK WITH (PUB. & NAME DIFFERENT) bio.tools/galaxy_australia (ORG.AU) | > CORRECT NAME OF TOOL COULD ALSO BE 'automatically-measurable FAIR', 'Evaluator', 'Indicators', 'Maturity' | Evaluating FAIR maturity through a scalable, automated, community-governed framework | This repository contains the results of the FAIR Metrics Group | FAIR Maturity Indicators and Tools | An angularJS app for FAIR Maturity Evaluation service | The FAIR Maturity Evaluation Service | In 2016, the ‘FAIR Guiding Principles for scientific data management and stewardship’ were published in Scientific Data | Resources and guidelines to assess the FAIRness of digital resources | FAIRsharing is a community-driven resource and has a growing number of users, adopters, collaborators and activities working to enable the FAIR Principles" ;
-    sc:featureList edam:operation_2422,
-        edam:operation_3761,
-        edam:operation_3763 ;
-    sc:license "MIT" ;
-    sc:name "FAIR_autogenerated" ;
-    sc:url "https://www.go-fair.org/fair-principles/" .
-
 <https://bio.tools/FAIRifier> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0219,
         edam:topic_3345 ;
@@ -25992,7 +20865,7 @@ Fast AMP Clustering System pipeline was benchmarked using the set of scripts ava
     sc:url "https://github.com/FAIRDataTeam/FAIRifier" .
 
 <https://bio.tools/FAME_3> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
@@ -26008,7 +20881,7 @@ Fast AMP Clustering System pipeline was benchmarked using the set of scripts ava
     sc:url "https://nerdd.zbh.uni-hamburg.de/fame3/" .
 
 <https://bio.tools/FAMoS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0625,
@@ -26025,7 +20898,7 @@ Fast AMP Clustering System pipeline was benchmarked using the set of scripts ava
     sc:url "https://cran.r-project.org/web/packages/FAMoS/index.html" .
 
 <https://bio.tools/FARDEEP> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3474,
@@ -26048,7 +20921,7 @@ Fast AMP Clustering System pipeline was benchmarked using the set of scripts ava
         <https://orcid.org/0000-0002-9868-9824> .
 
 <https://bio.tools/FARFAR2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0659,
         edam:topic_3512 ;
@@ -26066,14 +20939,12 @@ Fast AMP Clustering System pipeline was benchmarked using the set of scripts ava
 
 <https://bio.tools/FASTA_API_EBI> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0857" ;
-            sc:name "Sequence search results" ;
-            sc:sameAs "http://edamontology.org/data_0857" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0857" ;
+            sc:name "Sequence search results" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1073/pnas.85.8.2444> ;
@@ -26090,20 +20961,19 @@ Fast AMP Clustering System pipeline was benchmarked using the set of scripts ava
 
 <https://bio.tools/FASTA_EBI> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0857" ;
-            sc:name "Sequence search results" ;
-            sc:sameAs "http://edamontology.org/data_0857" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0857" ;
+            sc:name "Sequence search results" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:author "Bill Pearson",
-        "Web Production" ;
+        "Job Dispatcher" ;
     sc:citation <https://doi.org/10.1016/0888-7543(91)90071-L>,
         <https://doi.org/10.1093/bioinformatics/btw305>,
+        <https://doi.org/10.1093/nar/gkac240>,
         "pmcid:PMC5013910",
         "pubmed:27256311" ;
     sc:description "Sequence similarity searching against protein databases. FASTX and FASTY translate a DNA query. Optimal searches with SSEARCH (local), GGSEARCH (global) and GLSEARCH (global query, local database)." ;
@@ -26119,10 +20989,10 @@ Fast AMP Clustering System pipeline was benchmarked using the set of scripts ava
         <http://www.ebi.ac.uk/about/terms-of-use> ;
     sc:softwareVersion "1" ;
     sc:url "http://www.ebi.ac.uk/Tools/sss/fasta" ;
-    biotools:primaryContact "Web Production" .
+    biotools:primaryContact "Job Dispatcher Team" .
 
 <https://bio.tools/FASTO> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Ontology" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_3400,
@@ -26145,10 +21015,10 @@ Fast AMP Clustering System pipeline was benchmarked using the set of scripts ava
 
 <https://bio.tools/FASTXReader> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:description "a Perl module to parse FASTA/FASTQ files" ;
@@ -26162,7 +21032,7 @@ Fast AMP Clustering System pipeline was benchmarked using the set of scripts ava
     sc:url "https://metacpan.org/pod/FASTX::Reader" .
 
 <https://bio.tools/FATSLiM> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0153,
         edam:topic_0820,
@@ -26182,7 +21052,7 @@ Fast AMP Clustering System pipeline was benchmarked using the set of scripts ava
     biotools:primaryContact "Sébastien Buchoux" .
 
 <https://bio.tools/FB5P-seq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0769,
@@ -26207,35 +21077,8 @@ FB5P-seq is a computational pipeline to process single-cell RNA sequencing (scRN
     sc:name "FB5P-seq" ;
     sc:url "https://github.com/MilpiedLab/FB5P-seq" .
 
-<https://bio.tools/FBAT_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0625,
-        edam:topic_2269,
-        edam:topic_3517,
-        edam:topic_3673,
-        edam:topic_3676 ;
-    sc:citation <https://doi.org/10.1101/815290> ;
-    sc:description """An exact, unifying framework for region-based association testing in family-based designs, including higher criticism approaches, SKATs, multivariate and burden tests.
-
-Both FBAT and PBAT provide software for implementing family-based association tests. PBAT also provides power calculations, general data analysis functions for quantitative traits, and screening procedures for multiple traits, markers, and/or models. See the FBAT User's Manual for more details.
-
-Gourab De, Julian Hecker, Steve Horvath, Nan Laird, Steve Lake, Christoph Lange, Kristel Van Steen, Lin Wang, Wai-Ki Yip, Xin Xu, and Jin Jin Zhou.
-
-Software available at this site:.
-
-||| NAME EQUAL TO (PUB. DIFFERENT) bio.tools/fbat.
-
-||| COMMON LINK WITH (PUB. & NAME DIFFERENT) bio.tools/fbat (SITES.GOOGLE.COM/view/fbat-web-page).
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'SKATs', 'family-based', 'FBATs', 'region-based'""" ;
-    sc:featureList edam:operation_0487,
-        edam:operation_2238,
-        edam:operation_3196,
-        edam:operation_3791 ;
-    sc:name "FBAT_autogenerated" ;
-    sc:url "https://sites.google.com/view/fbat-web-page" .
-
 <https://bio.tools/FBB> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3170,
@@ -26254,7 +21097,7 @@ Software available at this site:.
     biotools:primaryContact "Ramón Huerta" .
 
 <https://bio.tools/FCM-m> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_0749,
@@ -26271,7 +21114,7 @@ Water optical clustering based on water color information is important for many
     biotools:primaryContact "Yunmei Li" .
 
 <https://bio.tools/FCNN> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -26298,7 +21141,7 @@ The fully convolutional neural network (FCNN) model is a deep learning model bas
     sc:url "https://bmbl.bmi.osumc.edu/FCNN" .
 
 <https://bio.tools/FCS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_3673,
         edam:topic_3676 ;
@@ -26312,49 +21155,29 @@ The fully convolutional neural network (FCNN) model is a deep learning model bas
 
 <https://bio.tools/FConverter> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ] ;
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Annotation track" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3796 ;
     sc:description "File format converter for FImpute" ;
     sc:featureList edam:operation_0335 ;
     sc:isAccessibleForFree true ;
-    sc:license "GPL-3.0",
-        "MIT" ;
+    sc:license "GPL-3.0" ;
     sc:name "FConverter" ;
     sc:operatingSystem "Linux",
         "Mac",
         "Windows" ;
     sc:softwareVersion "1.1" ;
-    sc:url "https://github.com/herrsalmi/FConverter" ;
-    sc:version "0.9" .
-
-<https://bio.tools/FDR> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3068,
-        edam:topic_3318,
-        edam:topic_3384 ;
-    sc:citation <https://doi.org/10.7717/PEERJ.8189>,
-        "pmcid:PMC6910120",
-        "pubmed:31844582" ;
-    sc:description """A comparison of random-field-theory and false-discovery-rate inference results in the analysis of registered one-dimensional biomechanical datasets.
-
-False discovery rate (FDR) inferences for one-dimensional (1d) data.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'RFT', 'RFT FDR', 'biomechanical', 'random-field-theory'""" ;
-    sc:featureList edam:operation_2238,
-        edam:operation_3891 ;
-    sc:license "MIT" ;
-    sc:name "FDR" ;
-    sc:url "https://github.com/0todd0000/fdr1d" .
+    sc:url "https://github.com/herrsalmi/FConverter" .
 
 <https://bio.tools/FEDRO> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0780,
@@ -26375,7 +21198,7 @@ False discovery rate (FDR) inferences for one-dimensional (1d) data.
     biotools:primaryContact "Simona E. Rombo" .
 
 <https://bio.tools/FEV1> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3305,
         edam:topic_3399,
@@ -26388,7 +21211,7 @@ False discovery rate (FDR) inferences for one-dimensional (1d) data.
     sc:url "http://resp.core.ubc.ca/ipress/FraminghamFEV1" .
 
 <https://bio.tools/FEniCS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3315,
         edam:topic_3316 ;
@@ -26407,7 +21230,7 @@ finite element methods.""" ;
     sc:url "http://fenicsproject.org" .
 
 <https://bio.tools/FFLtool> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0602,
@@ -26425,22 +21248,8 @@ FFLtool is a webserver for analyzing Feed Forward Loop (FFL) regulatory motifs a
     sc:name "FFLtool" ;
     sc:url "http://bioinfo.life.hust.edu.cn/FFLtool/" .
 
-<https://bio.tools/FFPE_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0199,
-        edam:topic_0632,
-        edam:topic_3168 ;
-    sc:citation <https://doi.org/10.1186/S12864-019-6056-8>,
-        "pmcid:PMC6720378",
-        "pubmed:31477010" ;
-    sc:description "> VERY_LOW CONFIDENCE! | > HOMEPAGE MISSING! | > NAME (FFPE) SIMILAR TO (PUB. DIFFERENT) bio.tools/ffpe (ffpe) | Bioinformatics and DNA-extraction strategies to reliably detect genetic variants from FFPE breast tissue samples | BACKGROUND:Archived formalin fixed paraffin embedded (FFPE) samples are valuable clinical resources to examine clinically relevant morphology features and also to study genetic changes. However, DNA quality and quantity of FFPE samples are often sub-optimal, and resulting NGS-based genetics variant detections are prone to false positives. Evaluations of wet-lab and bioinformatics approaches are needed to optimize variant detection from FFPE samples. RESULTS:As a pilot study, we designed within-subject triplicate samples of DNA derived from paired FFPE and fresh frozen breast tissues to highlight FFPE-specific artifacts" ;
-    sc:featureList edam:operation_3200,
-        edam:operation_3227,
-        edam:operation_3675 ;
-    sc:name "FFPE_autogenerated" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31477010" .
-
 <https://bio.tools/FFPEcap-seq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0659,
@@ -26461,7 +21270,7 @@ FFLtool is a webserver for analyzing Feed Forward Loop (FFL) regulatory motifs a
     sc:url "https://github.com/jeffpkamp/FFPEcap-seq" .
 
 <https://bio.tools/FFT> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_0621,
         edam:topic_0625,
@@ -26479,7 +21288,7 @@ The FFT represents a user-friendly tool that automatically characterizes several
     sc:url "https://github.com/hsueh-lab/FFT" .
 
 <https://bio.tools/FGTpartitioner> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0194,
         edam:topic_2885,
@@ -26500,7 +21309,7 @@ The FFT represents a user-friendly tool that automatically characterizes several
     biotools:primaryContact "Tyler K. Chafin" .
 
 <https://bio.tools/FHIR> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_3063,
@@ -26525,40 +21334,8 @@ The FFT represents a user-friendly tool that automatically characterizes several
     sc:softwareVersion "4.0.1" ;
     sc:url "https://www.hl7.org/fhir/index.html" .
 
-<https://bio.tools/FICC-Seq> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3168,
-        edam:topic_3512,
-        edam:topic_3794 ;
-    sc:citation <https://doi.org/10.1093/NAR/GKZ658>,
-        "pmcid:PMC6821191",
-        "pubmed:31361898" ;
-    sc:description "> MEDIUM CONFIDENCE! | > HOMEPAGE MISSING! | a method for enzyme-specified profiling of methyl-5-uridine in cellular RNA | Methyl-5-uridine (m5U) is one the most abundant non-canonical bases present in cellular RNA, and in yeast is found at position U54 of tRNAs where modification is catalysed by the methyltransferase Trm2. Although the mammalian enzymes that catalyse m5U formation are yet to be identified via experimental evidence, based on sequence homology to Trm2, two candidates currently exist, TRMT2A and TRMT2B. Here we developed a genome-wide single-nucleotide resolution mapping method, Fluorouracil-Induced-Catalytic-Crosslinking-Sequencing (FICC-Seq), in order to identify the relevant enzymatic targets. We demonstrate that TRMT2A is responsible for the majority of m5U present in human RNA, and that it commonly targets U54 of cytosolic tRNAs" ;
-    sc:featureList edam:operation_2495,
-        edam:operation_3192,
-        edam:operation_3799 ;
-    sc:name "FICC-Seq" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31361898" .
-
-<https://bio.tools/FIN-Seq> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0099,
-        edam:topic_0203,
-        edam:topic_2229,
-        edam:topic_3170,
-        edam:topic_3304 ;
-    sc:citation <https://doi.org/10.1093/NAR/GKZ968>,
-        "pubmed:31728515" ;
-    sc:description """transcriptional profiling of specific cell types from frozen archived tissue of the human central nervous system.
-
-FIN-Seq (Frozen Immunolabeled Nuclei Sequencing).
-
-Thousands of frozen, archived tissues from postmortem human central nervous system (CNS) are currently available in brain banks. As single cell and single nucleus technologies are..""" ;
-    sc:featureList edam:operation_2495,
-        edam:operation_3800 ;
-    sc:name "FIN-Seq" ;
-    sc:url "https://www.protocols.io/view/fin-seq-frozen-immunolabeled-nuclei-sequencing-zxbf7in" .
-
 <https://bio.tools/FINET> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0780,
@@ -26575,7 +21352,7 @@ Thousands of frozen, archived tissues from postmortem human central nervous syst
     sc:url "https://github.com/anyouwang/finet" .
 
 <https://bio.tools/FIREVAT> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_2640,
@@ -26598,23 +21375,8 @@ FIREVAT (FInding REliable Variants without ArTifacts) is an R package that perfo
     sc:name "FIREVAT" ;
     sc:url "https://github.com/cgab-ncc/FIREVAT" .
 
-<https://bio.tools/FISC> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3344 ;
-    sc:citation <https://doi.org/10.4300/JGME-D-19-00287.1>,
-        "pmcid:PMC6919187",
-        "pubmed:31871569" ;
-    sc:description """Building Capacity and Expanding Curricula Across an Academic Health Center.
-
-Background :The ability of health professions faculty to design, teach, evaluate, and improve relevant curricula is vital for teaching improvement science (IS) skills to trainees. Objective :We launched a Foundational Improvement Science Curriculum (FISC) to build faculty competence in IS teaching and scholarship, and to develop, expand, and standardize IS curricula across one institution. Methods :FISC consisted of 9 full or half-day sessions over 10 months in 2015-2016 and 2016-2017 academic years. Each session required pre-work, including readings, Institute for Healthcare Improvement Open School modules, and personal improvement projects. Sessions included brief didactics, group activities, planning, and feedback on curriculum development.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'Faculty Development Improvement Science', 'GME', 'curricula', 'UME'""" ;
-    sc:name "FISC" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31871569" .
-
 <https://bio.tools/FISIK> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3382,
         edam:topic_3855 ;
@@ -26627,7 +21389,7 @@ Background :The ability of health professions faculty to design, teach, evaluate
     sc:url "https://github.com/kjaqaman/FISIK" .
 
 <https://bio.tools/FIT> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3308,
         edam:topic_3518,
@@ -26650,7 +21412,7 @@ Background :The ability of health professions faculty to design, teach, evaluate
     biotools:primaryContact "Koji Iwayama" .
 
 <https://bio.tools/FLAGdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0780 ;
@@ -26659,7 +21421,7 @@ Background :The ability of health professions faculty to design, teach, evaluate
     sc:url "http://urgv.evry.inra.fr/projects/FLAGdb++/HTML/" .
 
 <https://bio.tools/FLAM-seq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0749,
@@ -26675,7 +21437,7 @@ Background :The ability of health professions faculty to design, teach, evaluate
     sc:url "https://github.com/rajewsky-lab/FLAMAnalysis" .
 
 <https://bio.tools/FLEA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0781,
         edam:topic_3168,
@@ -26697,7 +21459,7 @@ Background :The ability of health professions faculty to design, teach, evaluate
     sc:url "https://github.com/veg/flea-pipeline" .
 
 <https://bio.tools/FLEXOR> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3372 ;
@@ -26708,36 +21470,8 @@ Background :The ability of health professions faculty to design, teach, evaluate
     sc:name "FLEXOR" ;
     sc:url "https://github.com/FlexorSoftware/flexor" .
 
-<https://bio.tools/FLS> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3390,
-        edam:topic_3399,
-        edam:topic_3407 ;
-    sc:citation <https://doi.org/10.1007/S00198-019-05153-W>,
-        "pubmed:31511912" ;
-    sc:description "> LOW CONFIDENCE! | > HOMEPAGE MISSING! | Fracture liaison service and mortality in elderly hip fracture patients | Osteoporosis is a metabolic disorder that results in increased bone fragility and risk of fractures. Hip fracture is the most important fragility fracture. Fracture Liaison Service (FLS) is a secondary prevention model which identifies patients at risk for fragility fractures. The introduction of an intensive FLS model could decrease 1-year-mortality of hip fracture patients. INTRODUCTION:Hip fractures are a clinical manifestation of osteoporosis, and these patients are at risk of premature death and suffering subsequent fractures. FLS is an approach for secondary facture prevention by identifying patients with fragility fractures and initiating the appropriate treatment. Our objective is to analyze the effect of the FLS model over the first-year mortality rates following a hip fracture" ;
-    sc:featureList edam:operation_3503 ;
-    sc:name "FLS" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31511912" .
-
-<https://bio.tools/FLS_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0602,
-        edam:topic_0621,
-        edam:topic_3401,
-        edam:topic_3403 ;
-    sc:citation <https://doi.org/10.1007/S00198-019-05197-Y>,
-        "pubmed:31788717" ;
-    sc:description """Secondary prevention of fragility fractures in Asia Pacific.
-
-The Asia -Pacific Bone Academy (APBA) Fracture Liaison Service (FLS) Focus Group educational initiative has stimulated activity across the Asia -Pacific region with the intention of supporting widespread implementation of new FLS. In 2017, the APBA FLS Focus Group developed a suite of tools to support implementation of FLS across the Asia-Pacific region as a component of a multi-faceted educational initiative. This article puts this initiative into context with a narrative review describing the burden of fragility fractures in the region, the current secondary fracture prevention care gap and a summary of emerging best practice.
-
-||| HOMEPAGE MISSING!.
-
-||| NAME EQUAL TO (PUB. DIFFERENT) bio.tools/FLS""" ;
-    sc:name "FLS_autogenerated" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31788717" .
-
 <https://bio.tools/FMAPB2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0736,
@@ -26752,7 +21486,7 @@ The Asia -Pacific Bone Academy (APBA) Fracture Liaison Service (FLS) Focus Group
     sc:url "http://pipe.rcc.fsu.edu/fmapb2" .
 
 <https://bio.tools/FOCAL3D> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3382 ;
     sc:citation <https://doi.org/10.1101/777722>,
@@ -26764,7 +21498,7 @@ The Asia -Pacific Bone Academy (APBA) Fracture Liaison Service (FLS) Focus Group
     sc:url "https://github.com/MilsteinLab/FOCAL3D" .
 
 <https://bio.tools/FOCS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3361,
@@ -26784,14 +21518,13 @@ The Asia -Pacific Bone Academy (APBA) Fracture Liaison Service (FLS) Focus Group
 
 <https://bio.tools/FORECasT> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ] ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Nucleic acid sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -26812,7 +21545,7 @@ The Asia -Pacific Bone Academy (APBA) Fracture Liaison Service (FLS) Focus Group
     sc:url "https://partslab.sanger.ac.uk/FORECasT" .
 
 <https://bio.tools/FORESEE> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0202,
@@ -26834,7 +21567,7 @@ The Asia -Pacific Bone Academy (APBA) Fracture Liaison Service (FLS) Focus Group
     biotools:primaryContact "L. Turnhoff" .
 
 <https://bio.tools/FORGe_prioritizing_variants> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0199,
@@ -26854,18 +21587,8 @@ The Asia -Pacific Bone Academy (APBA) Fracture Liaison Service (FLS) Focus Group
     sc:softwareHelp <https://github.com/langmead-lab/FORGe/blob/v1.1/README.md> ;
     sc:url "https://github.com/langmead-lab/FORGe/tree/v1.1" .
 
-<https://bio.tools/FORTA> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3305,
-        edam:topic_3379,
-        edam:topic_3399 ;
-    sc:citation <https://doi.org/10.1007/S40266-019-00703-7>,
-        "pubmed:31435913" ;
-    sc:description "> MEDIUM CONFIDENCE! | > HOMEPAGE MISSING! | Application of an Information Technology Tool for the Epidemiological Assessment of Drug Treatment in Older People | BACKGROUND:To improve drug treatment in older people, who often present with multimorbidity and related polypharmacy, the FORTA (Fit fOR The Aged) List was developed via a Delphi consensus procedure. As a patient-in-focus listing approach (PILA), it has been clinically validated (VALFORTA trial). Unlike drug-oriented listing approaches (DOLAs), its application requires knowledge of patients' characteristics, including diagnoses and other details. As a drug list with discrete labels, application of FORTA seems particularly amenable to electronic support. METHODS:An information technology (IT) algorithm was developed to analyze bulk data on International Classification of Diseases (ICD)-coded diseases and Anatomical Therapeutic Chemical (ATC)-coded drugs" ;
-    sc:name "FORTA" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31435913" .
-
 <https://bio.tools/FOntCell> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_2229,
@@ -26878,7 +21601,7 @@ The Asia -Pacific Bone Academy (APBA) Fracture Liaison Service (FLS) Focus Group
     sc:url "https://gitlab.com/JavierCabau/fontcell" .
 
 <https://bio.tools/FP-LIMS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0605,
         edam:topic_0607,
@@ -26898,7 +21621,7 @@ FP-LIMS was formerly distributed as [DIA]/DIA2000/DIAPLUS.""" ;
     sc:url "https://www.fp-lims.com/" .
 
 <https://bio.tools/FP2VEC> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0218,
         edam:topic_0602,
@@ -26916,39 +21639,8 @@ FP-LIMS was formerly distributed as [DIA]/DIA2000/DIAPLUS.""" ;
         "Windows" ;
     sc:url "https://github.com/wsjeon92/FP2VEC" .
 
-<https://bio.tools/FPGA> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3361,
-        edam:topic_3372,
-        edam:topic_3474 ;
-    sc:citation <https://doi.org/10.1371/JOURNAL.PONE.0222984>,
-        "pmcid:PMC6786543",
-        "pubmed:31600218" ;
-    sc:description """Research on OpenCL optimization for FPGA deep learning application.
-
-Optimize the code provided by Xilinx, and the experiment proves that the optimized performance is 8-40 times optimized by Xilinx.The code URL provided by Xilinx is: https://github.com/Xilinx/SDAccel_Examples/tree/master/getting_started/clk_freq/large_loop_ocl Eight kinds Of convolution layer programs are set up by us according to the ascending order.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'OpenCL'""" ;
-    sc:name "FPGA" ;
-    sc:url "https://github.com/PoetryAndWine/FPGA_CNN_Acceleration" .
-
-<https://bio.tools/FPSs> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0749,
-        edam:topic_3361,
-        edam:topic_3419 ;
-    sc:citation <https://doi.org/10.1037/PRJ0000392>,
-        "pubmed:31621351" ;
-    sc:description """Training, employment, and lived experience.
-
-OBJECTIVE:Despite calls for increased peer support services for individuals involved with the criminal justice system, little is known about the training, employment, and characteristics of forensic peer specialists (FPSs). Pennsylvania developed the nation's first FPS program and remains at the forefront of the field. This paper responds to three research questions regarding forensic peer support in Pennsylvania, assessing: (a) employment patterns and demographic characteristics; (b) work tasks and sites; and (c) challenges and benefits of working as an FPS. METHOD:Data are drawn from a larger mixed-methods study of forensic peer support in Pennsylvania, including a detailed online survey of 117 FPS-trained workers, followed by 16 qualitative interviews with a subset of survey respondents.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'forensic peer specialists', 'PRACTICE:Study', 'FPSs lived', 'FPSs passionate'""" ;
-    sc:name "FPSs" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31621351" .
-
 <https://bio.tools/FPbase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
@@ -26973,7 +21665,7 @@ OBJECTIVE:Despite calls for increased peer support services for individuals invo
     biotools:primaryContact "Talley Lambert" .
 
 <https://bio.tools/FQStat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_3169,
@@ -26990,22 +21682,8 @@ OBJECTIVE:Despite calls for increased peer support services for individuals invo
     sc:softwareHelp <http://otulab.unl.edu:8080/static/data/FQStat%20documentation.pdf> ;
     sc:url "http://otulab.unl.edu/FQStat" .
 
-<https://bio.tools/FRAILSURVEY> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3305,
-        edam:topic_3390,
-        edam:topic_3489 ;
-    sc:citation <https://doi.org/10.1093/GERONI/IGZ038.1221>,
-        "pmcid:PMC6840738" ;
-    sc:description """RELIABLE SMARTPHONE APPLICATION FOR SELF-ASSESSMENT OF FRAILTY.
-
-AbstractFrailty is a clinical syndrome whose signs and symptoms are predictors of health complications, making this a major public health problem. FRAILSURVEY, which was considered a good practice by several entities, is a smartphone application that allows an easy assessment of frailty, available in Portuguese, English and Italian, on both iOS and Android stores. Smartphone-based assessment has been proven to be a useful diagnostic tool for patients, although few applications have demonstrated reliability. With this work we aimed to test the reliability of FRAILSURVEY as a tool to assess frailty, and to study people’s preference on which way to assess frailty.
-
-||| HOMEPAGE MISSING!""" ;
-    sc:name "FRAILSURVEY" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6840738/" .
-
 <https://bio.tools/FRASER> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_3170,
         edam:topic_3320,
@@ -27035,7 +21713,7 @@ This project depends on the python package wBuild and the R package FRASER. Furt
     sc:url "http://bioconductor.org/packages/release/bioc/html/FRASER.html" .
 
 <https://bio.tools/FRESA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_2269,
@@ -27050,46 +21728,8 @@ License: GPL-2, GPL-2.1 and/or GPL-3.""" ;
     sc:softwareHelp <https://cran.r-project.org/web/packages/FRESA.CAD/FRESA.CAD.pdf> ;
     sc:url "https://cran.r-project.org/package=FRESA.CAD" .
 
-<https://bio.tools/FRET> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0154,
-        edam:topic_0593,
-        edam:topic_0611 ;
-    sc:citation <https://doi.org/10.1038/S41592-019-0530-8>,
-        "pubmed:31471616" ;
-    sc:description "> MEDIUM CONFIDENCE! | > CORRECT NAME OF TOOL COULD ALSO BE 'FRET biomolecular research tool' | understanding its potential while avoiding pitfalls | Calculate Resonance Energy Transfer (FRET) Efficiencies | Addgene's collection of plasmids suitable for FRET experiments to measure protein interactions or conformation changes, as well as FRET standards | Addgene: Fluorescent Protein Guide: FRET | How to measure and calculate fluorescence resonance energy transfer (FRET) efficiency. FRET calculator. FRET measurement. FRET distance | Software > a:e - UV-Vis-IR Spectral Software > a:e Documentation Pages > a:e's Spectral Tools > | FRET, also known as Förster Resonance Energy Transfer or just Resonance Energy Transfer (RET), is a long-range non-radiative energy transfer process from an excited donor fluorophore, D, to an acceptor chromophore, A, located within a distance of approximately 1-10 nm" ;
-    sc:featureList edam:operation_3799,
-        edam:operation_3891 ;
-    sc:name "FRET" ;
-    sc:softwareHelp <http://www.fluortools.com/software/ae/documentation/tools/FRET> ;
-    sc:url "http://www.addgene.org/fluorescent-proteins/fret/" .
-
-<https://bio.tools/FRUS> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3063,
-        edam:topic_3379,
-        edam:topic_3400 ;
-    sc:citation <https://doi.org/10.1016/J.COMPBIOMED.2019.103388>,
-        "pubmed:31437627" ;
-    sc:description "> MEDIUM CONFIDENCE! | > CORRECT NAME OF TOOL COULD ALSO BE 'Designing digital prescribing' | A new approach with branch diagrams | EMM Functional Requirements Publicly Available | Visse funktioner i Excel kan ikke vises i Google Sheets og vil forsvinde, hvis du foretager ændringer | Allow administration recording during change from BST to GMT (1 hour gained, two x 0100 to 0200)" ;
-    sc:name "FRUS" ;
-    sc:url "http://bit.ly/ElectronicMedsMan-FRUS" .
-
-<https://bio.tools/FSCs> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3341,
-        edam:topic_3372,
-        edam:topic_3678 ;
-    sc:citation <https://doi.org/10.7287/PEERJ.PREPRINTS.1516V2> ;
-    sc:description """How are functionally similar code clones syntactically different? An empirical study and a benchmark.
-
-Background Today, redundancy in source code, so-called “clones”, caused by copy&paste can be found reliably using clone detection tools. Redundancy can arise also independently, however, caused not by copy&paste. At present, it is not clear how only functionally similar clones (FSC) differ from clones created by copy&paste. Our aim is to understand and categorise the syntactic differences in FSCs that distinguish them from copy&paste clones in a way that helps clone detection research. Methods. We conducted an experiment using known functionally similar programs in Java and C from coding contests. We analysed syntactic similarity with traditional detection tools and explored whether concolic clone detection can go beyond syntax.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'copy and paste', 'concolic', 'FSC', 'syntactic'""" ;
-    sc:name "FSCs" ;
-    sc:url "https://doi.org/10.7287/PEERJ.PREPRINTS.1516V2" .
-
 <https://bio.tools/FSSP> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3301,
         edam:topic_3315,
@@ -27106,38 +21746,8 @@ Background Today, redundancy in source code, so-called “clones”, caused by c
     sc:softwareHelp <http://fssp.food.dtu.dk/Help/Index.htm> ;
     sc:url "http://fssp.food.dtu.dk/" .
 
-<https://bio.tools/FSTA> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0780,
-        edam:topic_3390,
-        edam:topic_3810 ;
-    sc:citation <https://doi.org/10.1111/1750-3841.14769>,
-        "pubmed:31550403" ;
-    sc:description "> LOW CONFIDENCE! | > HOMEPAGE BROKEN! | > CORRECT NAME OF TOOL COULD ALSO BE 'AGRICOLA', 'FSTA AGRICOLA', 'WoS' | Accounting for Relevance When Evaluating Database Performance | The impetus for this study is the limited amount of information on performance characteristics of food science-encompassing online bibliographic databases. Database usage is an important element in modern research because a comprehensive understanding of current knowledge is essential for effective, unbiased hypothesis formulation and testing" ;
-    sc:featureList edam:operation_2422 ;
-    sc:name "FSTA" ;
-    sc:url "https://www.ebsco.com/products/research-databases/fsta" .
-
-<https://bio.tools/FSTT> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0611,
-        edam:topic_3077,
-        edam:topic_3303,
-        edam:topic_3337 ;
-    sc:citation <https://doi.org/10.1016/J.FORSCIINT.2019.109965>,
-        "pubmed:31610333" ;
-    sc:description """Facial soft tissue thicknesses in craniofacial identification.
-
-Facial soft tissue thicknesses (FSTT) form a key component of craniofacial identification methods, but as for any data, embedded measurement errors are highly pertinent. These in part dictate the effective resolution of the measurements. As herein reviewed, measurement methods are highly varied in FSTT studies and associated measurement errors have generally not been paid much attention. Less than half (44%) of 95 FSTT studies comment on measurement error and not all of these provide specific quantification. Where informative error measurement protocols are employed (5% of studies), the mean error magnitudes range from 3% to 45% rTEM and are typically in the order of 10-20%.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'FSTT measurement', 'TDValidator', 'Facial soft tissue thicknesses craniofacial identification', 'rTEM'""" ;
-    sc:featureList edam:operation_3435,
-        edam:operation_3799 ;
-    sc:name "FSTT" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31610333" .
-
 <https://bio.tools/FTAlign> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0081 ;
     sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTZ609>,
@@ -27150,7 +21760,7 @@ Facial soft tissue thicknesses (FSTT) form a key component of craniofacial ident
     sc:url "http://huanglab.phys.hust.edu.cn/ftalign/" .
 
 <https://bio.tools/FUMOSO> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0202,
         edam:topic_2229,
@@ -27169,7 +21779,7 @@ MOTIVATION:The elucidation of dysfunctional cellular processes that can induce t
     sc:url "https://github.com/aresio/FUMOSO" .
 
 <https://bio.tools/FXD-CSD-GUI> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_2828 ;
     sc:citation <https://doi.org/10.1107/S1600576719012159>,
@@ -27184,19 +21794,8 @@ Bragg intensities can be used to analyse crystal size distributions in a method
     sc:name "FXD-CSD-GUI" ;
     sc:url "https://owncloud.gwdg.de/index.php/s/JGluHlEp0pEUcAH" .
 
-<https://bio.tools/FXE> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0593,
-        edam:topic_2828,
-        edam:topic_3452 ;
-    sc:citation <https://doi.org/10.1107/S1600577519006647>,
-        "pmcid:PMC6730617",
-        "pubmed:31490131" ;
-    sc:description "> MEDIUM CONFIDENCE! | > HOMEPAGE MISSING! | Scientific instrument Femtosecond X-ray Experiments (FXE) | The European X-ray Free-Electron Laser (EuXFEL) delivers extremely intense (>1012 photons pulse-1 and up to 27000 pulses s-1), ultrashort (<100 fs) and transversely coherent X-ray radiation, at a repetition rate of up to 4.5 MHz. Its unique X-ray beam parameters enable novel and groundbreaking experiments in ultrafast photochemistry and material sciences at the Femtosecond X-ray Experiments (FXE) scientific instrument. This paper provides an overview of the currently implemented experimental baseline instrumentation and its performance during the commissioning phase, and a preview of planned improvements. FXE's versatile instrumentation combines the simultaneous application of forward X-ray scattering and X-ray spectroscopy techniques with femtosecond time resolution" ;
-    sc:name "FXE" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31490131" .
-
 <https://bio.tools/FaceGen> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3382,
         edam:topic_3399,
         edam:topic_3500 ;
@@ -27211,7 +21810,7 @@ Bragg intensities can be used to analyse crystal size distributions in a method
     sc:url "https://facegen.com" .
 
 <https://bio.tools/FaceSync> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3474,
         edam:topic_3794 ;
@@ -27227,30 +21826,8 @@ Bragg intensities can be used to analyse crystal size distributions in a method
     sc:url "https://github.com/cosanlab/facesync" ;
     biotools:primaryContact "Jin Hyun Cheong" .
 
-<https://bio.tools/Facetto> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0625,
-        edam:topic_3382,
-        edam:topic_3474 ;
-    sc:citation <https://doi.org/10.1101/722918> ;
-    sc:description "> MEDIUM CONFIDENCE! | > HOMEPAGE MISSING! | Combining Unsupervised and Supervised Learning for Hierarchical Phenotype Analysis in Multi-Channel Image Data | Abstract Facetto is a scalable visual analytics application that is used to discover single-cell phenotypes in high-dimensional multi-channel microscopy images of human tumors and tissues. Such images represent the cutting edge of digital histology and promise to revolutionize how diseases such as cancer are studied, diagnosed, and treated. Highly multiplexed tissue images are complex, comprising 10 9 or more pixels, 60-plus channels, and millions of individual cells. This makes manual analysis challenging and error-prone. Existing automated approaches are also inadequate, in large part, because they are unable to effectively exploit the deep knowledge of human tissue biology available to anatomic pathologists. To overcome these challenges, Facetto enables a semi-automated analysis of cell types and states" ;
-    sc:featureList edam:operation_3432,
-        edam:operation_3629,
-        edam:operation_3891 ;
-    sc:name "Facetto" ;
-    sc:url "https://doi.org/10.1101/722918" .
-
-<https://bio.tools/Facetto_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0625,
-        edam:topic_3382,
-        edam:topic_3474 ;
-    sc:citation <https://doi.org/10.1109/TVCG.2019.2934547>,
-        "pubmed:31514138" ;
-    sc:description "> MEDIUM CONFIDENCE! | > HOMEPAGE MISSING! | Combining Unsupervised and Supervised Learning for Hierarchical Phenotype Analysis in Multi-Channel Image Data | Facetto is a scalable visual analytics application that is used to discover single-cell phenotypes in high-dimensional multi-channel microscopy images of human tumors and tissues. Such images represent the cutting edge of digital histology and promise to revolutionize how diseases such as cancer are studied, diagnosed, and treated. Highly multiplexed tissue images are complex, comprising 109 or more pixels, 60-plus channels, and millions of individual cells. This makes manual analysis challenging and error-prone. Existing automated approaches are also inadequate, in large part, because they are unable to effectively exploit the deep knowledge of human tissue biology available to anatomic pathologists. To overcome these challenges, Facetto enables a semi-automated analysis of cell types and states" ;
-    sc:name "Facetto_autogenerated" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31514138" .
-
 <https://bio.tools/Faerun> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0218,
@@ -27262,18 +21839,8 @@ Bragg intensities can be used to analyse crystal size distributions in a method
     sc:url "http://faerun.gdb.tools/" ;
     biotools:primaryContact <https://orcid.org/0000-0003-2724-2942> .
 
-<https://bio.tools/FairSight> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0769,
-        edam:topic_3315,
-        edam:topic_3474 ;
-    sc:citation <https://doi.org/10.1109/TVCG.2019.2934262>,
-        "pubmed:31425083" ;
-    sc:description "> MEDIUM CONFIDENCE! | > HOMEPAGE MISSING! | > CORRECT NAME OF TOOL COULD ALSO BE 'fairness', 'fairness-aware' | Visual Analytics for Fairness in Decision Making | Data-driven decision making related to individuals has become increasingly pervasive, but the issue concerning the potential discrimination has been raised by recent studies. In response, researchers have made efforts to propose and implement fairness measures and algorithms, but those efforts have not been translated to the real-world practice of data-driven decision making. As such, there is still an urgent need to create a viable tool to facilitate fair decision making. We propose FairSight, a visual analytic system to address this need; it is designed to achieve different notions of fairness in ranking decisions through identifying the required actions - understanding, measuring, diagnosing and mitigating biases - that together lead to fairer decision making" ;
-    sc:name "FairSight" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31425083" .
-
 <https://bio.tools/FastFeatGen> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0780,
@@ -27292,7 +21859,7 @@ This is a tool for faster feature extraction from genome sequences and making ef
     biotools:primaryContact <https://orcid.org/0000-0002-8784-5406> .
 
 <https://bio.tools/FastProNGS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3168 ;
@@ -27312,7 +21879,7 @@ This is a tool for faster feature extraction from genome sequences and making ef
     biotools:primaryContact "G. Zhang" .
 
 <https://bio.tools/FastqProcessing> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:description "Tools to deal with fastq sequences and paired-end reads." ;
@@ -27320,7 +21887,7 @@ This is a tool for faster feature extraction from genome sequences and making ef
     sc:url "https://bioweb.pasteur.fr/packages/pack@FastqProcessing@0.38.1" .
 
 <https://bio.tools/FastqPuri> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3170,
@@ -27346,26 +21913,21 @@ This is a tool for faster feature extraction from genome sequences and making ef
 
 <https://bio.tools/FawMine> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2353" ;
-            sc:name "Ontology data" ;
-            sc:sameAs "http://edamontology.org/data_2353" ],
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:name "Sequence features" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ] ;
+            sc:additionalType "http://edamontology.org/data_2353" ;
+            sc:name "Ontology data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ],
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:name "Sequence features" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3786" ;
-            sc:name "Query script" ;
-            sc:sameAs "http://edamontology.org/data_3786" ],
+            sc:additionalType "http://edamontology.org/data_3786" ;
+            sc:name "Query script" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3753" ;
-            sc:name "Over-representation data" ;
-            sc:sameAs "http://edamontology.org/data_3753" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3753" ;
+            sc:name "Over-representation data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application",
         "Web service" ;
@@ -27390,14 +21952,14 @@ This is a tool for faster feature extraction from genome sequences and making ef
 
 <https://bio.tools/Fcirc> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3495" ;
-            sc:name "RNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3495" ] ;
+            sc:additionalType "http://edamontology.org/data_3495" ;
+            sc:encodingFormat "http://edamontology.org/format_2350" ;
+            sc:name "RNA sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_3780" ;
+            sc:name "Expression data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0099 ;
     sc:description "A Comprehensive Pipeline for Exploration of Fusion Linear and Circular RNAs" ;
@@ -27412,7 +21974,7 @@ This is a tool for faster feature extraction from genome sequences and making ef
     sc:url "https://github.com/WangHYLab/fcirc" .
 
 <https://bio.tools/FeGenie> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0196,
@@ -27428,7 +21990,7 @@ This is a tool for faster feature extraction from genome sequences and making ef
     sc:url "https://github.com/Arkadiy-Garber/FeGenie" .
 
 <https://bio.tools/FeatureSelect> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3474 ;
     sc:citation <https://doi.org/10.1186/s12859-019-2754-0>,
@@ -27446,7 +22008,7 @@ This is a tool for faster feature extraction from genome sequences and making ef
     biotools:primaryContact "LBBSoft" .
 
 <https://bio.tools/FeptideDB> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2275,
@@ -27462,7 +22024,7 @@ This is a tool for faster feature extraction from genome sequences and making ef
     sc:url "http://www4g.biotec.or.th/FeptideDB/" .
 
 <https://bio.tools/Ferret> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0102,
@@ -27483,7 +22045,7 @@ This is a tool for faster feature extraction from genome sequences and making ef
     sc:url "http://limousophie35.github.io/Ferret/" .
 
 <https://bio.tools/Fertility-GRU> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0749,
@@ -27496,7 +22058,7 @@ This is a tool for faster feature extraction from genome sequences and making ef
     sc:url "https://github.com/khanhlee/fertility-gru" .
 
 <https://bio.tools/Fetal_XCMR> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0593,
         edam:topic_3067,
@@ -27517,7 +22079,7 @@ This is a tool for faster feature extraction from genome sequences and making ef
         "Christopher K. Macgowan" .
 
 <https://bio.tools/Fido-SNP> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0102,
@@ -27542,7 +22104,7 @@ This is a tool for faster feature extraction from genome sequences and making ef
         "Piero Fariselli" .
 
 <https://bio.tools/FieldView> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0610,
@@ -27558,11 +22120,14 @@ This is a tool for faster feature extraction from genome sequences and making ef
     sc:url "https://cmci.colorado.edu/visualab/fieldview" .
 
 <https://bio.tools/Fiji> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3382 ;
     sc:citation <https://doi.org/10.1016/J.MEX.2019.10.018>,
+        <https://doi.org/10.1038/nmeth.2019>,
+        "pmcid:PMC3855844",
         "pmcid:PMC6861648",
+        "pubmed:22743772",
         "pubmed:31763187" ;
     sc:description """A quantitative method to analyse F-actin distribution in cells.
 
@@ -27579,7 +22144,7 @@ Fiji bundles together many popular and useful ImageJ plugins for image analysis
     sc:url "https://fiji.sc" .
 
 <https://bio.tools/FilterDCA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0196,
         edam:topic_3474,
@@ -27595,7 +22160,7 @@ Fiji bundles together many popular and useful ImageJ plugins for image analysis
     sc:url "http://gitlab.lcqb.upmc.fr/muscat/FilterDCA" .
 
 <https://bio.tools/FindSV> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0625,
@@ -27617,7 +22182,7 @@ FindSV is a structural variation pipeline written in nextflow and python. FindSV
     sc:url "https://github.com/J35P312/FindSV" .
 
 <https://bio.tools/FinisherSC> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3174,
@@ -27636,17 +22201,8 @@ FindSV is a structural variation pipeline written in nextflow and python. FindSV
     sc:url "http://kakitone.github.io/finishingTool/" ;
     biotools:primaryContact "Ka-Kit Lam" .
 
-<https://bio.tools/Fischer_344> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3304,
-        edam:topic_3384,
-        edam:topic_3444 ;
-    sc:citation <https://doi.org/10.1101/743583> ;
-    sc:description "An MRI-Derived Neuroanatomical Atlas of the Fischer 344 Rat Brain for Automated Anatomical Segmentation | Fischer-344 rat brain template and anatomical atlas | We developed a high-resolution 3D MRI atlas of the adult Fischer 344 rat brain. The atlas has an isotropic spatial resolution of 60 micrometers, and contains 98 individually delineated structures and sub-structures. It was developed using Pydpiper image registration software to create an average brain of 41 four-month old male and female Fischer 344 rats" ;
-    sc:name "Fischer 344" ;
-    sc:url "https://www.nearlab.xyz/fischer344atlas" .
-
 <https://bio.tools/FishResp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3300,
         edam:topic_3407 ;
@@ -27665,7 +22221,7 @@ FindSV is a structural variation pipeline written in nextflow and python. FindSV
     biotools:primaryContact "Sergey Morozov" .
 
 <https://bio.tools/Fiview> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3334 ;
     sc:description "Digital Filter Design, Viewing and Comparison tool." ;
@@ -27679,7 +22235,7 @@ FindSV is a structural variation pipeline written in nextflow and python. FindSV
     biotools:primaryContact "Jim Peters" .
 
 <https://bio.tools/FixVAF> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_2640,
@@ -27708,7 +22264,7 @@ The project previously contained 2 equivalent implementations of allele counting
     sc:url "https://github.com/danchubb/FixVAF" .
 
 <https://bio.tools/Flagser> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_2229,
@@ -27734,7 +22290,7 @@ For more detailed instructions, see docs/documentation_flagser.pdf. The program
     sc:url "https://github.com/luetge/flagser" .
 
 <https://bio.tools/FlashWeave> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3174,
@@ -27750,7 +22306,7 @@ For more detailed instructions, see docs/documentation_flagser.pdf. The program
     sc:url "https://github.com/meringlab/FlashWeave.jl" .
 
 <https://bio.tools/FlavoDb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3068,
@@ -27771,7 +22327,7 @@ Flavonoids are richly diverse polyphenolic plant secondary metabolites that are
     sc:url "http://bioinfo.net.in/flavodb/home.html" .
 
 <https://bio.tools/Flint> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3174,
@@ -27790,23 +22346,8 @@ Flavonoids are richly diverse polyphenolic plant secondary metabolites that are
         <https://camilo-v.github.io/flint/getting_started.html> ;
     sc:url "https://camilo-v.github.io/flint/" .
 
-<https://bio.tools/FlourishCare> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3399,
-        edam:topic_3419 ;
-    sc:citation <https://doi.org/10.1093/GERONI/IGZ038.1024>,
-        "pmcid:PMC6840606" ;
-    sc:description """HELPING OLDER ADULTS FLOURISH IN RURAL COMMUNITIES.
-
-AbstractFlourishing represents living within an optimal range of human functioning. To foster older adults flourishing, our FlourishCare model of care coordination was developed as part of a HRSA Geriatric Workforce Enhancement Program (GWEP) to transform PC sites by delivering coordinated services in 6 rural KY counties. FlourishCare is unique in its integration of academic teams, community health teams and mental health specialists within age-friendly primary care health systems. FlourishCare recognizes that many of the largest drivers of health care costs fall outside the clinical care environment. One of the major components of Flourish is the involvement of community health navigators (CHNs), community education coordinators (CECs) and community coalitions working with the health teams to respond to the social determinants of health.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'Geriatric', 'GWEP'""" ;
-    sc:name "FlourishCare" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6840606/" .
-
 <https://bio.tools/FlowSculpt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0611,
@@ -27823,7 +22364,7 @@ AbstractFlourishing represents living within an optimal range of human functioni
     sc:url "http://www.flowsculpt.org" .
 
 <https://bio.tools/FluNet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0634,
@@ -27847,7 +22388,7 @@ FluNet is a global web-based tool for influenza virological surveillance first l
     sc:url "https://www.who.int/influenza/gisrs_laboratory/flunet/en/" .
 
 <https://bio.tools/FluReassort> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3068,
@@ -27863,7 +22404,7 @@ FluNet is a global web-based tool for influenza virological surveillance first l
     sc:url "https://www.jianglab.tech/FluReassort" .
 
 <https://bio.tools/FluView> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0634,
@@ -27877,44 +22418,8 @@ The Influenza Division at CDC collects, compiles and analyzes information on inf
     sc:name "FluView" ;
     sc:url "https://www.cdc.gov/flu/weekly/fluviewinteractive.htm" .
 
-<https://bio.tools/Fluid_Dynamics_Android_Application> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3068,
-        edam:topic_3315 ;
-    sc:citation <https://doi.org/10.20944/PREPRINTS201910.0309.V1> ;
-    sc:description """An Efficient Semi-Implicit Solver for Compressible Flows.
-
-The computing power of smartphones has not received considerable attention in the mainstream education system. Most of the education-oriented smartphone applications (apps) are limited to general purpose services like Massive Open Online Courses (MOOCs), language learning, and calculators (performing basic mathematical calculations). Greater potential of smartphones lies in educators and researchers developing their customized apps for learners in highly specific domains. In line with this, we present Fluid Dynamics, a highly accurate Android application for measuring flow properties in compressible flows. This app can determine properties across the stationary normal and oblique shock, moving normal shock and across Prandtl $-$ Meyer expansion fan.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'app', 'semi-implicit', 'flows', 'compressible'""" ;
-    sc:featureList edam:operation_2426,
-        edam:operation_3435 ;
-    sc:name "Fluid Dynamics Android Application" ;
-    sc:url "https://doi.org/10.20944/PREPRINTS201910.0309.V1" .
-
-<https://bio.tools/Fluor> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0078,
-        edam:topic_3297,
-        edam:topic_3382 ;
-    sc:citation <https://doi.org/10.1107/S2053230X19014730>,
-        "pubmed:31702581" ;
-    sc:description """Inexpensive robotic system for standard and fluorescent imaging of protein crystals.
-
-Code and .obj files for construction of a fluorescent robotic imager used for protein crystallography.
-
-Code and .obj files for construction of a robotic imager capable of using visible fluorescence to automatically image plates from protein crystallization experiments.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'protein-crystallization', 'trace-labeled', 'crystallization-trial', 'Panowin'""" ;
-    sc:featureList edam:operation_3096,
-        edam:operation_3435,
-        edam:operation_3443 ;
-    sc:license "Apache-2.0" ;
-    sc:name "Fluor" ;
-    sc:url "https://github.com/dakota0064/Fluorescent_Robotic_Imager" .
-
 <https://bio.tools/FluoroCellTrack> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3372,
@@ -27936,7 +22441,7 @@ Code and .obj files for construction of a robotic imager capable of using visibl
     biotools:primaryContact <https://orcid.org/0000-0003-0484-5871> .
 
 <https://bio.tools/Fly-QMA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3382,
@@ -27956,7 +22461,7 @@ Code and .obj files for construction of a robotic imager capable of using visibl
     sc:url "https://www.sbernasek.com/flyqma/" .
 
 <https://bio.tools/FlyCircuit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0621,
@@ -27974,18 +22479,8 @@ Code and .obj files for construction of a robotic imager capable of using visibl
     sc:name "FlyCircuit" ;
     sc:url "http://www.flycircuit.tw" .
 
-<https://bio.tools/FlyIT> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3382,
-        edam:topic_3474 ;
-    sc:citation <https://doi.org/10.1109/TCBB.2019.2935723>,
-        "pubmed:31425122" ;
-    sc:description "> HOMEPAGE MISSING! | Drosophila Embryogenesis Image Annotation based on Image Tiling and Convolutional Neural Networks | With the rise of image-based transcriptomics, spatial gene expression data has become increasingly important for understanding gene regulations from the tissue level down to the cell level. Especially, the gene expression images of Drosophila embryos provide a new data source in the study of Drosophila embryogenesis. It is imperative to develop automatic annotation tools since manual annotation is labor-intensive and requires professional knowledge. Although a lot of image annotation methods have been proposed in the computer vision field, they may not work well for gene expression images, due to the great difference between these two annotation tasks. Besides the apparent difference on images, the annotation is performed at the gene level rather than the image level, where the expression patterns of a gene are recorded in multiple images" ;
-    sc:featureList edam:operation_3553 ;
-    sc:name "FlyIT" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31425122" .
-
 <https://bio.tools/Flye> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0196,
@@ -28009,7 +22504,7 @@ Code and .obj files for construction of a robotic imager capable of using visibl
     sc:url "https://github.com/fenderglass/Flye" .
 
 <https://bio.tools/FoPA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Script" ;
     sc:applicationSubCategory edam:topic_0602,
@@ -28029,7 +22524,7 @@ Code and .obj files for construction of a robotic imager capable of using visibl
     biotools:primaryContact "Mansoori F." .
 
 <https://bio.tools/FoldamerDB> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2828,
@@ -28049,7 +22544,7 @@ Code and .obj files for construction of a robotic imager capable of using visibl
     sc:url "http://foldamerdb.ttk.hu/" .
 
 <https://bio.tools/FoodMicrobionet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_3297,
         edam:topic_3301 ;
@@ -28060,7 +22555,7 @@ Code and .obj files for construction of a robotic imager capable of using visibl
     sc:url "http://www.foodmicrobionet.org" .
 
 <https://bio.tools/ForestQC> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0625,
@@ -28089,7 +22584,7 @@ If no HWE p-value file provided, HWE p-value would be computed by ForestQC. Or i
     sc:url "https://github.com/avallonking/ForestQC" .
 
 <https://bio.tools/FosSahul> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_3050,
@@ -28102,7 +22597,7 @@ If no HWE p-value file provided, HWE p-value would be computed by ForestQC. Or i
     sc:url "https://github.com/GlobalEcologyFlinders/FosSahul" .
 
 <https://bio.tools/FossilJ> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_3077,
         edam:topic_3382 ;
@@ -28117,7 +22612,7 @@ If no HWE p-value file provided, HWE p-value would be computed by ForestQC. Or i
     sc:url "https://github.com/fionapye/FossilJ" .
 
 <https://bio.tools/Foundry> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0218,
         edam:topic_0749,
@@ -28137,20 +22632,8 @@ If no HWE p-value file provided, HWE p-value would be computed by ForestQC. Or i
     sc:softwareHelp <https://github.com/biocaddie/Foundry-ES/blob/master/README.md> ;
     sc:url "https://github.com/biocaddie/Foundry-ES" .
 
-<https://bio.tools/Fox> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0634,
-        edam:topic_2885,
-        edam:topic_3399 ;
-    sc:citation <https://doi.org/10.1101/19002659> ;
-    sc:description "> MEDIUM CONFIDENCE! | Fox Insight Collects Online, Longitudinal Patient-Reported Outcomes and Genetic Data on Parkinson's Disease | Fox DEN provides investigators with a tool to explore, download and apply statistical models on aggregated data collected for the Fox Insight online clinical study. The Fox Insight study collects patient-reported outcomes and genetic data from people with Parkinson's disease and their loved ones" ;
-    sc:featureList edam:operation_0484,
-        edam:operation_3196,
-        edam:operation_3436 ;
-    sc:name "Fox" ;
-    sc:url "https://foxden.michaeljfox.org" .
-
 <https://bio.tools/FoxMask> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_3382,
@@ -28168,7 +22651,7 @@ If no HWE p-value file provided, HWE p-value would be computed by ForestQC. Or i
     biotools:primaryContact "Eric Devost" .
 
 <https://bio.tools/FractBias> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
@@ -28186,7 +22669,7 @@ If no HWE p-value file provided, HWE p-value would be computed by ForestQC. Or i
     biotools:primaryContact "Eric Lyons" .
 
 <https://bio.tools/FragBuilder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0176,
@@ -28212,7 +22695,7 @@ FragBuilder will run with most versions of Open Babel, however there was bug in
     sc:url "https://github.com/jensengroup/fragbuilder/" .
 
 <https://bio.tools/FreeHi-C> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3169,
@@ -28236,14 +22719,13 @@ FreeHi-C (v1.0) is short for Fragment interactions empirical estimation for fast
 
 <https://bio.tools/Frela> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3021" ;
-            sc:name "UniProt accession" ;
-            sc:sameAs "http://edamontology.org/data_3021" ] ;
+            sc:additionalType "http://edamontology.org/data_3021" ;
+            sc:name "UniProt accession" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1668" ;
-            sc:name "Z-value" ;
-            sc:sameAs "http://edamontology.org/data_1668" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1668" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Z-value" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0091 ;
@@ -28259,23 +22741,8 @@ FreeHi-C (v1.0) is short for Fragment interactions empirical estimation for fast
     sc:softwareHelp <https://frela.eurac.edu/#help> ;
     sc:url "https://frela.eurac.edu" .
 
-<https://bio.tools/Frin> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0622,
-        edam:topic_3293 ;
-    sc:citation <https://doi.org/10.3389/FGENE.2019.01261>,
-        "pmcid:PMC6909884",
-        "pubmed:31867045" ;
-    sc:description """An Efficient Method for Representing Genome Evolutionary History.
-
-Phylogenetic analysis is important in understanding the process of biological evolution, and phylogenetic trees are used to represent the evolutionary history. Each taxon in a phylogenetic tree has not more than one parent, so phylogenetic trees cannot express the complex evolutionary information implicit in phylogeny. Phylogenetic networks can be used to express genome evolutionary histories. Therefore, it is great significance to research the construction of phylogenetic networks. Cass algorithm is an efficient method for constructing phylogenetic networks because it can construct a much simpler network. However, Cass relies heavily on the order of input data, i.e. different networks can be constructed for the same dataset with different input orders. Based on the frequency and incompatibility degree of taxa, we propose an efficiently improved algorithm of Cass, called as Frin""" ;
-    sc:featureList edam:operation_0323,
-        edam:operation_0326,
-        edam:operation_0567 ;
-    sc:name "Frin" ;
-    sc:url "https://github.com/wangjuanimu/Frin" .
-
 <https://bio.tools/FrogCap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0194,
         edam:topic_0632,
@@ -28292,7 +22759,7 @@ Phylogenetic analysis is important in understanding the process of biological ev
     biotools:primaryContact <https://orcid.org/0000-0001-6381-6339> .
 
 <https://bio.tools/FullMeSH> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3068,
         edam:topic_3382,
         edam:topic_3474 ;
@@ -28306,7 +22773,7 @@ Phylogenetic analysis is important in understanding the process of biological ev
     biotools:primaryContact "Shanfeng Zhu" .
 
 <https://bio.tools/FunDMDeep-m6A> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3295,
@@ -28321,7 +22788,7 @@ Phylogenetic analysis is important in understanding the process of biological ev
     sc:url "https://github.com/NWPU-903PR/DMDeepm6A1.0" .
 
 <https://bio.tools/FunGeCo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0218,
@@ -28346,7 +22813,7 @@ This feature allows comparison of functional modules in sequenced genomes obtain
     sc:url "https://web.rniapps.net/fungeco" .
 
 <https://bio.tools/FunMappOne> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0602,
@@ -28368,7 +22835,7 @@ This feature allows comparison of functional modules in sequenced genomes obtain
     sc:url "https://github.com/Greco-Lab/FunMappOne" .
 
 <https://bio.tools/FunVar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0634,
@@ -28381,7 +22848,7 @@ This feature allows comparison of functional modules in sequenced genomes obtain
     sc:url "https://github.com/lasigeBioTM/FunVar" .
 
 <https://bio.tools/Functional_Heatmap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3308,
@@ -28403,7 +22870,7 @@ This feature allows comparison of functional modules in sequenced genomes obtain
         "Ruoting Yang" .
 
 <https://bio.tools/Fundus-Image-Segmentation> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -28420,7 +22887,7 @@ This feature allows comparison of functional modules in sequenced genomes obtain
     biotools:primaryContact "Jemima Jeba" .
 
 <https://bio.tools/Funmap2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0202,
@@ -28445,7 +22912,7 @@ This feature allows comparison of functional modules in sequenced genomes obtain
     biotools:primaryContact "N. Wang" .
 
 <https://bio.tools/FusionScan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0196,
@@ -28463,24 +22930,8 @@ Homepage may be broken as of January 4th, 2021.""" ;
     sc:name "FusionScan" ;
     sc:url "http://biome.ewha.ac.kr/fusionscan/fusionscan.html" .
 
-<https://bio.tools/FuzzyVariantsExplorer> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0621,
-        edam:topic_0622,
-        edam:topic_3168 ;
-    sc:citation <https://doi.org/10.1101/811695> ;
-    sc:description """Graded exploration of genomic data and fuzzy queries.
-
-Abstract Summary FuzzyVariantExplorer is a web interface and a fuzzy search system for exploring richly annotated genomes in a flexible way. The application allows combining vague constraints in expressive logical queries to retrieve graded sets of genes and their associated variants. Results can be further refined in a visual way by selecting keywords and categories that are extracted from the underlying annotations and weighted with a statistical significance score; keywords can then be clustered using Latent Dirichlet Allocation and explored visually. The system has been applied to a set of Saccharomyces cerevisiae genome annotations and a few variants. Availability FuzzyVariantExplorer source code is available at the URL https: bitbucket.org mfalda fuzzyvariantsexplorer src and has been developed in Scala, TypeScript and R. Contact marco.falda@unipd.it.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'FuzzyVariantExplorer'""" ;
-    sc:featureList edam:operation_0362,
-        edam:operation_2421,
-        edam:operation_2422 ;
-    sc:name "FuzzyVariantsExplorer" ;
-    sc:url "https://bitbucket.org/mfalda/fuzzyvariantsexplorer/src/" .
-
 <https://bio.tools/G-Graph> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0749,
@@ -28496,7 +22947,7 @@ G-Graph is a free-software graphical desktop application that allows you to perf
     sc:url "https://mumdex.com/ggraph/" .
 
 <https://bio.tools/G-OnRamp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3170,
@@ -28522,7 +22973,7 @@ G-Graph is a free-software graphical desktop application that allows you to perf
         "Wilson Leung" .
 
 <https://bio.tools/G-WIZ> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0634,
@@ -28540,27 +22991,8 @@ G-Graph is a free-software graphical desktop application that allows you to perf
     sc:name "G-WIZ" ;
     sc:url "https://github.com/jonaspatronjp/GWIZ-Rscript/" .
 
-<https://bio.tools/G-WIZ_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0634,
-        edam:topic_3053,
-        edam:topic_3360,
-        edam:topic_3517 ;
-    sc:citation <https://doi.org/10.1371/JOURNAL.PONE.0220215>,
-        "pmcid:PMC6894795",
-        "pubmed:31805043" ;
-    sc:description """Assessing the performance of genome-wide association studies for predicting disease risk.
-
-INSTRUCTIONS ON HOW TO RUN GWIZ.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'GWAS-ROCS'""" ;
-    sc:featureList edam:operation_3196,
-        edam:operation_3659,
-        edam:operation_3791 ;
-    sc:name "G-WIZ_autogenerated" ;
-    sc:url "https://github.com/jonaspatronjp/GWIZ-Rscript/" .
-
 <https://bio.tools/G2P> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0102,
@@ -28582,7 +23014,7 @@ INSTRUCTIONS ON HOW TO RUN GWIZ.
     biotools:primaryContact "Xiaolei Liu" .
 
 <https://bio.tools/G3viz> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0602,
@@ -28602,23 +23034,8 @@ INSTRUCTIONS ON HOW TO RUN GWIZ.
     sc:url "https://cran.r-project.org/package=g3viz" ;
     biotools:primaryContact "Xin Guo" .
 
-<https://bio.tools/GABAC> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0621,
-        edam:topic_0654 ;
-    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTZ922>,
-        "pubmed:31830243" ;
-    sc:description """an arithmetic coding solution for genomic data.
-
-Genomics-oriented Context-Adaptive Binary Arithmetic Coding.
-
-The GABAC development is continued within the Genie project (https://github.com/mitogen/genie).
-
-As a public service, the GABAC codec is provided in good faith, but without any express or implied warranties. We also refer the reader to our LICENSE. The goal of our policy is that early release should enable the progress of science""" ;
-    sc:name "GABAC" ;
-    sc:url "https://github.com/mitogen/gabac" .
-
 <https://bio.tools/GAD> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Script" ;
     sc:applicationSubCategory edam:topic_0196,
@@ -28636,13 +23053,13 @@ A python script for extracting genome features from GTF/GFF3.""" ;
     sc:url "https://github.com/bio-projects/GAD" .
 
 <https://bio.tools/GADMA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "Genetic algorithm for inferring demographic history of multiple populations from allele frequency spectrum data" ;
     sc:name "GADMA" ;
     sc:url "https://github.com/ctlab/GADMA" .
 
 <https://bio.tools/GAEseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_2885,
@@ -28660,7 +23077,7 @@ A python script for extracting genome features from GTF/GFF3.""" ;
     sc:url "https://github.com/WuLoli/GAEseq" .
 
 <https://bio.tools/GAG_builder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0602,
@@ -28680,34 +23097,8 @@ A python script for extracting genome features from GTF/GFF3.""" ;
     sc:softwareHelp <http://glycan-builder.cermav.cnrs.fr/gag/view/rsrc/home/Builder.pdf> ;
     sc:url "http://glycan-builder.cermav.cnrs.fr/gag/" .
 
-<https://bio.tools/GAIA_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3174,
-        edam:topic_3308,
-        edam:topic_3673,
-        edam:topic_3697,
-        edam:topic_3810 ;
-    sc:citation <https://doi.org/10.1101/804690> ;
-    sc:description """an integrated metagenomics suite.
-
-Metagenomics data analysis software.
-
-Metagenomics analysis tool: simplest, fastest and accurate solution for metagenomics data.
-
-The easiest, most accurate and reliable cloud software for Metagenomics Analysis.
-
-Gaia 2.0 uses the best, most up to date and reliable scientific methods and algorithms, and you don’t even need any bioinformatics knowledge to run it!.
-
-GAIA has a reliable upload system with integrated recovery and resume functions to allow you to quickly and securely upload your data. You can also upload it directly from your Google Drive. Use the Validate button to check the integrity of your Seq data.
-
-A solution to close the gap between data production and interpretation in metagenomics.
-
-||| NAME (GAIA) SIMILAR TO (PUB. DIFFERENT) bio.tools/gaia (gaia)""" ;
-    sc:featureList edam:operation_3460 ;
-    sc:name "GAIA_autogenerated" ;
-    sc:url "http://gaia.sequentiabiotech.com" .
-
 <https://bio.tools/GAL> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0622,
@@ -28728,7 +23119,7 @@ A solution to close the gap between data production and interpretation in metage
     biotools:primaryContact "Arijit Panda" .
 
 <https://bio.tools/GAMA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3305,
@@ -28745,7 +23136,7 @@ A solution to close the gap between data production and interpretation in metage
     sc:url "https://gama-platform.github.io/" .
 
 <https://bio.tools/GAMer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2828,
         edam:topic_3306,
         edam:topic_3452 ;
@@ -28757,7 +23148,7 @@ A solution to close the gap between data production and interpretation in metage
     sc:url "http://github.com/ctlee/gamer" .
 
 <https://bio.tools/GAPPA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0637,
         edam:topic_3174,
@@ -28776,7 +23167,7 @@ A solution to close the gap between data production and interpretation in metage
     sc:url "http://github.com/lczech/gappa" .
 
 <https://bio.tools/GASAL2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0097,
@@ -28801,23 +23192,8 @@ A Linux platform with CUDA toolkit 8 or higher is required, along with usual bui
     sc:name "GASAL2" ;
     sc:url "https://github.com/nahmedraja/GASAL2" .
 
-<https://bio.tools/GASAL2_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0080,
-        edam:topic_3168 ;
-    sc:citation <https://doi.org/10.1186/S12859-019-3185-7>,
-        "pmcid:PMC6862790",
-        "pubmed:31744474" ;
-    sc:description """a GPU accelerated sequence alignment library for high-throughput NGS data.
-
-Following publication of the original article [1], the author requested changes to the figures 4, 7, 8, 9, 12 and 14 to align these with the text. The corrected figures are supplied below.
-
-||| HOMEPAGE MISSING!""" ;
-    sc:featureList edam:operation_0292 ;
-    sc:name "GASAL2_autogenerated" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31744474" .
-
 <https://bio.tools/GATK_PathSeq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3308,
@@ -28834,81 +23210,8 @@ Following publication of the original article [1], the author requested changes
     sc:url "https://github.com/broadinstitute/gatk" ;
     biotools:primaryContact "Matthew Meyerson" .
 
-<https://bio.tools/GAUSSIAN09> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0593,
-        edam:topic_2828,
-        edam:topic_3047,
-        edam:topic_3292,
-        edam:topic_3332 ;
-    sc:citation <https://doi.org/10.1107/S2053229619011641>,
-        "pubmed:31589159" ;
-    sc:description """The synergistic co-operation of N-H...O=P hydrogen bonds and C-H...OX weak intermolecular interactions (X is =P or -C) in the (CH3O)2P(O)(NH-NHC6F5) amidophosphoester.
-
-Expanding the limits of computational chemistry.
-
-Gaussian 16 expands the range of molecules and types of chemical problems that you can model. More...
-
-Gaussian collaborator Dr. Vincent Ortiz has been named one of the 70 new Fellows of the American Chemical Society. We congratulate him on his achievement. More….
-
-||| CORRECT NAME OF TOOL COULD ALSO BE '6-311G(d,p', 'R22(8', 'B3LYP', 'synergistic co-operation N-H OP hydrogen bonds C-H OX weak intermolecular interactions X P -C CH ...'""" ;
-    sc:featureList edam:operation_0310,
-        edam:operation_0337,
-        edam:operation_0394 ;
-    sc:name "GAUSSIAN09" ;
-    sc:url "http://www.gaussian.com" .
-
-<https://bio.tools/GBA> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3337 ;
-    sc:citation <https://doi.org/10.1089/BIO.2019.0060>,
-        "pubmed:31859533" ;
-    sc:description """Evaluating the German Biobank Node as Coordinating Institution of the German Biobank Alliance.
-
-Produkte_Zusammenarbeit_und_Vernetzung_in_der_GBA (LamaPoll.
-
-Products_cooperation_and_networking_within_GBA (LamaPoll.
-
-Poll Produkte_Zusammenarbeit_und_Vernetzung_in_der_GBA.
-
-Produkte, Zusammenarbeit und Vernetzung in der GBA – Ihre Meinung ist gefragt!.
-
-Poll Products_cooperation_and_networking_within_GBA.
-
-Products, cooperation and networking within GBA – tell us your thoughts!.
-
-vielen Dank, dass Sie an unserer Befragung teilnehmen. In dieser Befragung geht es uns darum besser zu verstehen, wie Sie die Arbeit des German Biobank Node (GBN) und die Zusammenarbeit in der German Biobank Alliance (GBA) bewerten.
-
-Thank you for agreeing to participate in our survey.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'services', 'products', 'GBN', 'GBN GBA'""" ;
-    sc:featureList edam:operation_3283,
-        edam:operation_3760 ;
-    sc:name "GBA" ;
-    sc:url "https://lamapoll.de/Produkte_Zusammenarbeit_und_Vernetzung_in_der_GBA" .
-
-<https://bio.tools/GBDTCDA> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0602,
-        edam:topic_0634,
-        edam:topic_0659,
-        edam:topic_2640,
-        edam:topic_3474 ;
-    sc:citation <https://doi.org/10.7150/IJBS.33806>,
-        "pmcid:PMC6909967",
-        "pubmed:31853227" ;
-    sc:description """Predicting circRNA-disease Associations Based on Gradient Boosting Decision Tree with Multiple Biological Data Fusion.
-
-Circular RNA (circRNA) is a closed-loop structural non-coding RNA molecule which plays a significant role during the gene regulation processes. There are many previous studies shown that circRNAs can be regarded as the sponges of miRNAs. Thus, circRNA is also a key point for disease diagnosing, treating and inferring. However, traditional experimental approaches to verify the associations between the circRNA and disease are time-consuming and money-consuming. There are few computational models to predict potential circRNA-disease associations, which become our motivation to propose a new computational model.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'CircR2Disease'""" ;
-    sc:featureList edam:operation_2495,
-        edam:operation_3435,
-        edam:operation_3659 ;
-    sc:name "GBDTCDA" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31853227" .
-
 <https://bio.tools/GBIF> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0637,
         edam:topic_0780,
@@ -28924,24 +23227,8 @@ Circular RNA (circRNA) is a closed-loop structural non-coding RNA molecule which
     sc:softwareHelp <https://www.gbif.es/wp-content/uploads/2018/02/GBIF.ES_Inf_Col_2014.pdf> ;
     sc:url "https://www.gbif.org" .
 
-<https://bio.tools/GBM> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_2269,
-        edam:topic_3305,
-        edam:topic_3421,
-        edam:topic_3474 ;
-    sc:citation <https://doi.org/10.1093/NEUROS/NYZ403>,
-        "pubmed:31586211" ;
-    sc:description """An Online Calculator for the Prediction of Survival in Glioblastoma Patients Using Classical Statistics and Machine Learning.
-
-BACKGROUND:Although survival statistics in patients with glioblastoma multiforme (GBM) are well-defined at the group level, predicting individual patient survival remains challenging because of significant variation within strata. OBJECTIVE:To compare statistical and machine learning algorithms in their ability to predict survival in GBM patients and deploy the best performing model as an online survival calculator. METHODS:Patients undergoing an operation for a histopathologically confirmed GBM were extracted from the Surveillance Epidemiology and End Results (SEER) database (2005-2015) and split into a training and hold-out test set in an 80 20 ratio""" ;
-    sc:featureList edam:operation_0417,
-        edam:operation_3503,
-        edam:operation_3659 ;
-    sc:name "GBM" ;
-    sc:url "https://cnoc-bwh.shinyapps.io/gbmsurvivalpredictor/" .
-
 <https://bio.tools/GBOL> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Ontology" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0621,
@@ -28966,7 +23253,7 @@ If you organize your projects under a group, it works like a folder.""" ;
     sc:url "http://gbol.life" .
 
 <https://bio.tools/GBS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_3518,
@@ -28982,32 +23269,8 @@ If you organize your projects under a group, it works like a folder.""" ;
     sc:name "GBS" ;
     sc:url "http://github.com/malemay/delgbs" .
 
-<https://bio.tools/GBSTyper> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_2269,
-        edam:topic_3474,
-        edam:topic_3520 ;
-    sc:citation <https://doi.org/10.1186/S12859-019-3282-7>,
-        "pmcid:PMC6929280",
-        "pubmed:31870283" ;
-    sc:description """Rapid classification of group B Streptococcus serotypes based on matrix-assisted laser desorption ionization-time of flight mass spectrometry and machine learning techniques.
-
-Free HTML5 Website Template by GetTemplates.co.
-
-A web server for identifying Group B streptococcus Serotypes.
-
-To enhance application of the ML models to clinical practice, we constructed a web tool named GBSTyper.
-
-Group B Streptococcus Serotypes identification based on MALDI-TOF mass spectra.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'GBS serotypes either'""" ;
-    sc:featureList edam:operation_3215,
-        edam:operation_3694,
-        edam:operation_3860 ;
-    sc:name "GBSTyper" ;
-    sc:url "http://csb.cse.yzu.edu.tw/GBSTyper/" .
-
 <https://bio.tools/GCAC> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_2258,
         edam:topic_3336,
@@ -29026,22 +23289,8 @@ Group B Streptococcus Serotypes identification based on MALDI-TOF mass spectra.
     sc:url "https://toolshed.g2.bx.psu.edu/repository?repository_id=351af44ceb587e54" ;
     biotools:primaryContact "Andrew M. Lynn" .
 
-<https://bio.tools/GCF> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0203,
-        edam:topic_0602,
-        edam:topic_3170 ;
-    sc:citation <https://doi.org/10.1371/JOURNAL.PONE.0215187>,
-        "pmcid:PMC6736238",
-        "pubmed:31504044" ;
-    sc:description "> LOW CONFIDENCE! | > CORRECT NAME OF TOOL COULD ALSO BE 'Gene Cascade Finder' | A tool for identification of gene cascades and its application in Caenorhabditis elegans | Obtaining a comprehensive understanding of the gene regulatory networks, or gene cascades, involved in cell fate determination and cell lineage segregation in Caenorhabditis elegans is a long-standing challenge. Although RNA-sequencing (RNA-Seq) is a promising technique to resolve these questions, the bioinformatics tools to identify associated gene cascades from RNA-Seq data remain inadequate. To overcome these limitations, we developed Gene Cascade Finder (GCF) as a novel tool for building gene cascades by comparison of mutant and wild-type RNA-Seq data along with integrated information of protein-protein interactions, expression timing, and domains. Application of GCF to RNA-Seq data confirmed that SPN-4 and MEX-3 regulate the canonical Wnt pathway during embryonic development" ;
-    sc:featureList edam:operation_0277,
-        edam:operation_1781,
-        edam:operation_3439 ;
-    sc:name "GCF" ;
-    sc:url "http://www.gcf.sk.ritsumei.ac.jp" .
-
 <https://bio.tools/GCMDR> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_3375,
@@ -29056,7 +23305,7 @@ Group B Streptococcus Serotypes identification based on MALDI-TOF mass spectra.
     sc:url "https://github.com/xyzx2019/GCMDR" .
 
 <https://bio.tools/GCNG> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2229,
         edam:topic_3170,
@@ -29075,7 +23324,7 @@ GCNG for extracellular gene relationship inference. (A) GCNG model using spatial
     sc:url "https://github.com/xiaoyeye/GCNG" .
 
 <https://bio.tools/GCPred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0154,
@@ -29094,88 +23343,8 @@ GCNG for extracellular gene relationship inference. (A) GCNG model using spatial
     sc:url "http://gcpred.com/" ;
     biotools:primaryContact "Aloysius Wong" .
 
-<https://bio.tools/GDB-13> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0209,
-        edam:topic_3047,
-        edam:topic_3292,
-        edam:topic_3303,
-        edam:topic_3474 ;
-    sc:citation <https://doi.org/10.26434/CHEMRXIV.7172849.V2> ;
-    sc:description """Exploring the GDB-13 Chemical Space Using Deep Generative Models.
-
-A Recurrent Neural Network implementation that uses SMILES strings to generate molecules from GDB-13.
-
-Implementation of the RNN model used in "Exploring the GDB-13 chemical space using deep generative models".
-
-University of Bern · DCB · Reymond Group.
-
-Mechanistic basis of the inhibition of SLC11/NRAMP-mediated metal ion transport by bis-isothiourea substituted compounds.
-
-Cover Picture: Medicinal Chemistry Aware Database GDBMedChem (Mol. Inf. 8‐9/2019).
-
-The cover picture shows a 3D‐map of GDBMedChem, containing 10 million drug‐like molecules selected from the generated database GDB17 by applying medicinal chemistry rules, projected from the 42‐dimensional MQN chemical space and color‐coded by the number of ring.
-
-||| COMMON LINK WITH (PUB. & NAME DIFFERENT) bio.tools/PolyPharmacology_Browser (UNIBE.CH), bio.tools/ppb (UNIBE.CH), bio.tools/multi-fingerprint_browser (UNIBE.CH)""" ;
-    sc:featureList edam:operation_0310,
-        edam:operation_0337,
-        edam:operation_2426 ;
-    sc:license "MIT" ;
-    sc:name "GDB-13" ;
-    sc:url "http://gdb.unibe.ch" .
-
-<https://bio.tools/GDB13> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0154,
-        edam:topic_0209,
-        edam:topic_3303,
-        edam:topic_3315,
-        edam:topic_3474 ;
-    sc:citation <https://doi.org/10.2533/CHIMIA.2019.1018>,
-        "pubmed:31883554" ;
-    sc:description """Exploring Chemical Space with Machine Learning.
-
-University of Bern · DCB · Reymond Group.
-
-Mechanistic basis of the inhibition of SLC11/NRAMP-mediated metal ion transport by bis-isothiourea substituted compounds.
-
-Cover Picture: Medicinal Chemistry Aware Database GDBMedChem (Mol. Inf. 8‐9/2019).
-
-The cover picture shows a 3D‐map of GDBMedChem, containing 10 million drug‐like molecules selected from the generated database GDB17 by applying medicinal chemistry rules, projected from the 42‐dimensional MQN chemical space and color‐coded by the number of ring.
-
-||| COMMON LINK WITH (PUB. & NAME DIFFERENT) bio.tools/PolyPharmacology_Browser (UNIBE.CH), bio.tools/ppb (UNIBE.CH), bio.tools/multi-fingerprint_browser (UNIBE.CH).
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'GDB13 database', 'reymond-group'""" ;
-    sc:featureList edam:operation_0337 ;
-    sc:name "GDB13" ;
-    sc:url "http://gdb.unibe.ch" .
-
-<https://bio.tools/GDC_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0121,
-        edam:topic_0659,
-        edam:topic_2640,
-        edam:topic_3173,
-        edam:topic_3577 ;
-    sc:citation <https://doi.org/10.1101/788919> ;
-    sc:description """Uniform Genomic Data Analysis in the NCI Genomic Data Commons.
-
-The NCI's Genomic Data Commons (GDC) provides the cancer research community with a unified data repository that enables data sharing across cancer genomic studies in support of precision medicine.
-
-The Next Generation Cancer Knowledge Network.
-
-||| NAME EQUAL TO (PUB. DIFFERENT) bio.tools/gdc.
-
-||| COMMON LINK WITH (PUB. & NAME DIFFERENT) bio.tools/rtips (CANCER.GOV).
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'GDC Data', 'GDC Data Portal', 'Genomic Data Commons'""" ;
-    sc:featureList edam:operation_0224,
-        edam:operation_3196,
-        edam:operation_3211,
-        edam:operation_3227,
-        edam:operation_3431 ;
-    sc:name "GDC_autogenerated" ;
-    sc:url "https://gdc.cancer.gov/" .
-
 <https://bio.tools/GEAN> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
@@ -29200,7 +23369,7 @@ The gene sequence and genetic feature variation between different individuals ar
     sc:url "https://github.com/baoxingsong/GEAN" .
 
 <https://bio.tools/GEAR-base> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0196,
@@ -29224,7 +23393,7 @@ The gene sequence and genetic feature variation between different individuals ar
         "Andreas Keller" .
 
 <https://bio.tools/GEDFN> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3360,
         edam:topic_3474,
@@ -29241,7 +23410,7 @@ graph embedding deep learning guide microbial biomarkers' identification.""" ;
     sc:url "https://github.com/MicroAVA/GEDFN.git" .
 
 <https://bio.tools/GEDIT> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3170,
@@ -29255,7 +23424,7 @@ graph embedding deep learning guide microbial biomarkers' identification.""" ;
     sc:url "http://webtools.mcdb.ucla.edu/" .
 
 <https://bio.tools/GEM-NET> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3303,
         edam:topic_3314,
@@ -29268,7 +23437,7 @@ graph embedding deep learning guide microbial biomarkers' identification.""" ;
     sc:url "http://gem-net.net" .
 
 <https://bio.tools/GEMME> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_3303,
@@ -29282,7 +23451,7 @@ graph embedding deep learning guide microbial biomarkers' identification.""" ;
     sc:url "http://www.lcqb.upmc.fr/GEMME" .
 
 <https://bio.tools/GEMMER> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -29300,24 +23469,8 @@ graph embedding deep learning guide microbial biomarkers' identification.""" ;
     sc:url "http://gemmer.barberislab.com" ;
     biotools:primaryContact "Matteo Barberis" .
 
-<https://bio.tools/GEMS-Pack> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0749,
-        edam:topic_3382 ;
-    sc:citation <https://doi.org/10.1021/ACS.JCIM.9B00740>,
-        "pubmed:31633924" ;
-    sc:description """A Graphical User Interface for the Packmol Program.
-
-We present GEMS-Pack, a graphical user interface for Packmol. Since Packmol is largely used by the molecular simulation community, this work provides a complement to it, in the form of a user-friendly and efficient interface. A tool for number volume density calculation is provided to make needed calculations faster. Also, a visualization utility is included, which lets the users preview how their systems will look like even before running the packing procedure. This application does not modify the original Packmol code; it works in a complementary way, by generating the input script and running it through the system's terminal. This program is part of a development project and is intended to be further extended. Two examples are described in this paper to illustrate GEMS-Pack usage.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'Packmol'""" ;
-    sc:featureList edam:operation_0337 ;
-    sc:name "GEMS-Pack" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31633924" .
-
 <https://bio.tools/GEMtractor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0821,
@@ -29335,7 +23488,7 @@ The GEMtractor a platform for trimming and extracting genome-scale metabolic mod
     sc:url "http://sbi.uni-rostock.de/gemtractor" .
 
 <https://bio.tools/GENAVi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2640,
@@ -29357,14 +23510,22 @@ GENAVi combines several R packages commonly used for normalizing, clustering, vi
     sc:url "https://junkdnalab.shinyapps.io/GENAVi/" .
 
 <https://bio.tools/GENCODE> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0659,
         edam:topic_0769 ;
-    sc:citation <https://doi.org/10.1093/nar/gky955>,
-        "pubmed:30357393" ;
+    sc:citation <https://doi.org/10.1093/nar/gkaa1087>,
+        <https://doi.org/10.1093/nar/gky955>,
+        <https://doi.org/10.1101/gr.132159.111>,
+        <https://doi.org/10.1101/gr.135350.111>,
+        "pmcid:PMC3431492",
+        "pmcid:PMC7778937",
+        "pubmed:22955987",
+        "pubmed:22955988",
+        "pubmed:30357393",
+        "pubmed:33270111" ;
     sc:description "Consortium identifying and classifying all gene features in the human and mouse genomes with high accuracy based on biological evidence, and releasing these annotations for the benefit of biomedical research and genome interpretation." ;
     sc:featureList edam:operation_2422,
         edam:operation_3501 ;
@@ -29384,7 +23545,7 @@ GENAVi combines several R packages commonly used for normalizing, clustering, vi
     sc:url "https://www.gencodegenes.org/" .
 
 <https://bio.tools/GENOMICUS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0194,
@@ -29395,6 +23556,7 @@ GENAVi combines several R packages commonly used for normalizing, clustering, vi
         edam:topic_3299,
         edam:topic_3943 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btq079>,
+        <https://doi.org/10.1093/nar/gkab1091>,
         <https://doi.org/10.1093/nar/gks1156>,
         <https://doi.org/10.1093/nar/gku1112>,
         <https://doi.org/10.1093/nar/gkx1003> ;
@@ -29411,46 +23573,8 @@ GENAVi combines several R packages commonly used for normalizing, clustering, vi
     biotools:primaryContact <http://orcid.org/0000-0001-7032-5650>,
         <http://orcid.org/0000-0002-8209-173X> .
 
-<https://bio.tools/GEO> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0203,
-        edam:topic_3360,
-        edam:topic_3518 ;
-    sc:citation <https://doi.org/10.1155/2019/6469420>,
-        "pmcid:PMC6701329",
-        "pubmed:31467713" ;
-    sc:description "> LOW CONFIDENCE! | > COMMON LINK WITH (PUB. & NAME DIFFERENT) bio.tools/ncbi_resources (NLM.NIH.GOV), bio.tools/ncbi_geo (NCBI.NLM.NIH.GOV/geo), bio.tools/genbank (NLM.NIH.GOV) | > CORRECT NAME OF TOOL COULD ALSO BE 'gene our', 'RobustRankAggreg', 'CRC' (bio.tools/CRC), 'colorectal' | Integrated Analysis of Oncogenic Networks in Colorectal Cancer Identifies GUCA2A as a Molecular Marker | Gene Expression Omnibus (GEO) is a database repository of high throughput gene expression data and hybridization arrays, chips, microarrays | GEO is a public functional genomics data repository supporting MIAME-compliant data submissions. Array- and sequence-based data are accepted. Tools are provided to help users query and download experiments and curated gene expression profiles" ;
-    sc:featureList edam:operation_2495,
-        edam:operation_3431,
-        edam:operation_3766 ;
-    sc:name "GEO" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/geo" .
-
-<https://bio.tools/GEO2R> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0128,
-        edam:topic_0659,
-        edam:topic_3518 ;
-    sc:citation <https://doi.org/10.1007/S11033-019-04992-4>,
-        <https://doi.org/10.1089/CMB.2019.0211>,
-        <https://doi.org/10.1155/2019/8794013>,
-        <https://doi.org/10.3892/OL.2019.10578>,
-        <https://doi.org/10.3892/OL.2019.10605>,
-        "pmcid:PMC6662497",
-        "pmcid:PMC6676667",
-        "pmcid:PMC6676736",
-        "pubmed:31385238",
-        "pubmed:31392215",
-        "pubmed:31402962",
-        "pubmed:31424263",
-        "pubmed:31452738" ;
-    sc:description "> LOW CONFIDENCE! | > COMMON LINK WITH (PUB. & NAME DIFFERENT) bio.tools/ncbi_resources (NLM.NIH.GOV), bio.tools/ncbi_geo (NCBI.NLM.NIH.GOV/geo ; NLM.NIH.GOV/geo), bio.tools/genbank (NLM.NIH.GOV) | Screening and Bioinformatics Analysis of IgA Nephropathy Gene Based on GEO Databases | Discovery of core genes in colorectal cancer by weighted gene co-expression network analysis | Identifying miltefosine-resistant key genes in protein-protein interactions network and experimental verification in Iranian Leishmania major | Screening of potential biomarkers in hepatitis C virus-induced hepatocellular carcinoma using bioinformatic analysis | Identification of Key Biomarkers and Potential Molecular Mechanisms in Oral Squamous Cell Carcinoma by Bioinformatics Analysis | Gene Expression Omnibus (GEO) is a database repository of high throughput gene expression data and hybridization arrays, chips, microarrays" ;
-    sc:featureList edam:operation_3463,
-        edam:operation_3766,
-        edam:operation_3792 ;
-    sc:name "GEO2R" ;
-    sc:url "http://www.ncbi.nlm.nih.gov/geo/" .
-
 <https://bio.tools/GEO2RNAseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3308,
@@ -29464,62 +23588,8 @@ GENAVi combines several R packages commonly used for normalizing, clustering, vi
     sc:softwareHelp <https://bitbucket.org/thomas_wolf/geo2rnaseq/overview> ;
     sc:url "https://anaconda.org/xentrics/r-geo2rnaseq" .
 
-<https://bio.tools/GEO2R_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0602,
-        edam:topic_3360,
-        edam:topic_3518 ;
-    sc:citation <https://doi.org/10.1002/JCB.29398>,
-        <https://doi.org/10.3892/IJMM.2019.4332>,
-        <https://doi.org/10.4103/1673-5374.264460>,
-        "pmcid:PMC6777682",
-        "pubmed:31535407",
-        "pubmed:31535658",
-        "pubmed:31545397" ;
-    sc:description "> LOW CONFIDENCE! | > COMMON LINK WITH (PUB. & NAME DIFFERENT) bio.tools/ncbi_geo (NLM.NIH.GOV/geo ; NCBI.NLM.NIH.GOV/geo), bio.tools/ncbi_resources (NLM.NIH.GOV), bio.tools/genbank (NLM.NIH.GOV) | > CORRECT NAME OF TOOL COULD ALSO BE 'KEGG', 'spinal cord injury', 'TLR4', 'SSc', 'CALU', 'microRNA-TF', 'Npy Atf3', 'DEGs', 'Npy', 'spinal cord injury zebrafish', 'cord injury', 'spinal cord' | Screening and identification of biomarkers for systemic sclerosis via microarray technology | Identification of key candidate genes in neuropathic pain by integrated bioinformatic analysis | Bioinformatic identification of key candidate genes and pathways in axon regeneration after spinal cord injury in zebrafish | Gene Expression Omnibus (GEO) is a database repository of high throughput gene expression data and hybridization arrays, chips, microarrays | Use GEO2R to compare two or more groups of Samples in order to identify genes that are differentially expressed across experimental conditions" ;
-    sc:featureList edam:operation_0313,
-        edam:operation_3223,
-        edam:operation_3501 ;
-    sc:name "GEO2R_autogenerated" ;
-    sc:url "http://www.ncbi.nlm.nih.gov/geo/geo2r/" .
-
-<https://bio.tools/GEO_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0203,
-        edam:topic_3295,
-        edam:topic_3518 ;
-    sc:citation <https://doi.org/10.1186/S12967-019-2065-2>,
-        "pmcid:PMC6751626",
-        "pubmed:31533842" ;
-    sc:description "> VERY_LOW CONFIDENCE! | > COMMON LINK WITH (PUB. & NAME DIFFERENT) bio.tools/ncbi_resources (NLM.NIH.GOV), bio.tools/ncbi_geo (NCBI.NLM.NIH.GOV/geo), bio.tools/genbank (NLM.NIH.GOV) | > CORRECT NAME OF TOOL COULD ALSO BE 'GSE112047', 'MethylMix' (bio.tools/methylmix), 'limma' (bio.tools/limma), 'GSE112047 GSE76938' | Identification of key DNA methylation-driven genes in prostate adenocarcinoma | Gene Expression Omnibus (GEO) is a database repository of high throughput gene expression data and hybridization arrays, chips, microarrays | GEO is a public functional genomics data repository supporting MIAME-compliant data submissions. Array- and sequence-based data are accepted. Tools are provided to help users query and download experiments and curated gene expression profiles" ;
-    sc:featureList edam:operation_2495,
-        edam:operation_3206,
-        edam:operation_3207 ;
-    sc:name "GEO_autogenerated" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/geo/" .
-
-<https://bio.tools/GEO_database> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0621,
-        edam:topic_3308,
-        edam:topic_3324,
-        edam:topic_3489,
-        edam:topic_3810 ;
-    sc:citation <https://doi.org/10.1101/812727> ;
-    sc:description """Characterisation of Quorum Sensing System and Its Role in Global Regulation in Hafnia alvei.
-
-This database stores curated gene expression DataSets, as well as original Series and Platform records in the Gene Expression Omnibus (GEO) repository. Enter search terms to locate experiments of interest. DataSet records contain additional resources including cluster tools and differential expression queries.
-
-(smok* OR diet) AND (mammals[organism] NOT human[organism]).
-
-||| COMMON LINK WITH (PUB. & NAME DIFFERENT) bio.tools/GSE33335 (NLM.NIH.GOV/gds), bio.tools/ncbi_resources (NLM.NIH.GOV), bio.tools/genbank (NLM.NIH.GOV).
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'homoserine lactones AHLs Hafnia alvei', 'AHLs Hafnia alvei', 'lactones AHLs Hafnia alvei', 'Hafnia alvei'""" ;
-    sc:featureList edam:operation_0323,
-        edam:operation_2421,
-        edam:operation_3431 ;
-    sc:name "GEO database" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/gds" .
-
 <https://bio.tools/GEREDB> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0204,
@@ -29546,7 +23616,7 @@ Huang, Tinghua & Huang, Xiali & Shi, Bomei & Yao, Min. (2019)""" ;
     sc:url "http://www.thua45.cn/geredb" .
 
 <https://bio.tools/GESUR> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0736,
@@ -29564,7 +23634,7 @@ GESUR performs overall survival (OS) or disease free survival (DFS, also called
     sc:url "http://gesur.cancer-pku.cn/" .
 
 <https://bio.tools/GET-IT> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_3361,
@@ -29585,7 +23655,7 @@ Share your maps, measurements, and sensors.""" ;
     sc:url "http://get-it.it" .
 
 <https://bio.tools/GE_LDA_Survival> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2640,
@@ -29609,7 +23679,7 @@ You can find the code for the MTLR algorithm here http://pssp.srv.ualberta.ca/ho
     sc:url "https://github.com/nitsanluke/GE-LDA-Survival" .
 
 <https://bio.tools/GFA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3295,
         edam:topic_3474,
@@ -29624,7 +23694,7 @@ We combined clinical, cytokine, genomic, methylation and dietary data from 43 yo
     sc:url "https://cran.r-project.org/web/packages/GFA/index.html" .
 
 <https://bio.tools/GGMs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2269,
@@ -29644,19 +23714,8 @@ We combined clinical, cytokine, genomic, methylation and dietary data from 43 yo
     sc:url "https://github.com/V-Bernal/GGM-Shrinkage" ;
     biotools:primaryContact "Peter Horvatovich" .
 
-<https://bio.tools/GHOST_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0194,
-        edam:topic_0621,
-        edam:topic_3293 ;
-    sc:citation <https://doi.org/10.1093/SYSBIO/SYZ051>,
-        "pubmed:31364711" ;
-    sc:description "> HOMEPAGE MISSING! | > NAME EQUAL TO (PUB. DIFFERENT) bio.tools/ghost | > CORRECT NAME OF TOOL COULD ALSO BE 'IQ-TREE' (bio.tools/iq-tree) | Recovering Historical Signal from Heterotachously-evolved Sequence Alignments | Molecular sequence data that have evolved under the influence of heterotachous evolutionary processes are known to mislead phylogenetic inference. We introduce the General Heterogeneous evolution On a Single Topology (GHOST) model of sequence evolution, implemented under a maximum-likelihood framework in the phylogenetic program IQ-TREE (http: www.iqtree.org). Simulations show that using the GHOST model, IQ-TREE can accurately recover the tree topology, branch lengths and substitution model parameters from heterotachously-evolved sequences. We investigate the performance of the GHOST model on empirical data by sampling phylogenomic alignments of varying lengths from a plastome alignment" ;
-    sc:featureList edam:operation_0547 ;
-    sc:name "GHOST_autogenerated" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31364711" .
-
 <https://bio.tools/GIDB> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0218,
@@ -29678,17 +23737,8 @@ We combined clinical, cytokine, genomic, methylation and dietary data from 43 yo
     biotools:primaryContact "Xiaoyan Zhang",
         "Ying Wang" .
 
-<https://bio.tools/GIFE> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3444 ;
-    sc:citation <https://doi.org/10.1007/978-3-030-00755-3_3>,
-        "pmcid:PMC6715136",
-        "pubmed:31468034" ;
-    sc:description "> MEDIUM CONFIDENCE! | > HOMEPAGE MISSING! | > CORRECT NAME OF TOOL COULD ALSO BE 'MDE' | Efficient and Robust Group-wise Isometric Fiber Embedding | Tractography is a prevalent technique for in vivo imaging of the white matter fibers (a.k.a. the tractograms), but it is also known to be error-prone. We previously propose the Group-wise Tractogram Analysis (GiTA) framework for identifying anatomically valid fibers across subjects according to cross-subject consistency. However, the original framework is based on computationally expensive brute-force KNN search. In this work, we propose a more general and efficient extension of GiTA. Our main idea is to find the finite dimensional vector-space representation of the fiber tracts of varied lengths across different subjects, and we call it the group-wise isometric fiber embedding (GIFE)" ;
-    sc:name "GIFE" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31468034" .
-
 <https://bio.tools/GISA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0736,
         edam:topic_3315 ;
@@ -29697,33 +23747,8 @@ We combined clinical, cytokine, genomic, methylation and dietary data from 43 yo
     sc:name "GISA" ;
     sc:url "https://github.com/ceegeeCode/GISA" .
 
-<https://bio.tools/GIST_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0123,
-        edam:topic_0154,
-        edam:topic_0166,
-        edam:topic_2275 ;
-    sc:citation <https://doi.org/10.1021/ACS.JCTC.9B00742>,
-        "pubmed:31589427" ;
-    sc:description """Solvation Free Energy as a Measure of Hydrophobicity.
-
-For a standard cpptraj installation, a shell script and a patch file has been supplied.
-
-bash patch.sh </ROUTE/TO/CPPTRAJ/DIRECTORY>.
-
-In configure add to the CUDA_TARGET cuda_kernel_gist/lib_cuda_gist.a.
-
-The columns in the gist output file are ordered differently than in the original implementation, the density of the water oxygen and hydrogen was moved to the back. This, of course, also has a big impact on the other columns.
-
-||| NAME EQUAL TO (PUB. DIFFERENT) bio.tools/gist""" ;
-    sc:featureList edam:operation_0405,
-        edam:operation_0407,
-        edam:operation_0409,
-        edam:operation_0478 ;
-    sc:name "GIST_autogenerated" ;
-    sc:url "https://github.com/liedllab/gigist" .
-
 <https://bio.tools/GITAR> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0769,
@@ -29744,7 +23769,7 @@ The columns in the gist output file are ordered differently than in the original
     sc:url "http://genomegitar.org" .
 
 <https://bio.tools/GL-UVAB> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0194,
         edam:topic_0621,
@@ -29766,7 +23791,7 @@ Perl script that automates the analyses to establish GL-UVAB (Genomic Lineages o
     sc:url "https://sourceforge.net/projects/gluvab/" .
 
 <https://bio.tools/GLAMbox> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_2269,
@@ -29781,26 +23806,8 @@ Perl script that automates the analyses to establish GL-UVAB (Genomic Lineages o
     sc:name "GLAMbox" ;
     sc:url "https://glambox.readthedocs.io/en/latest/" .
 
-<https://bio.tools/GLAMbox_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0092,
-        edam:topic_2269 ;
-    sc:citation <https://doi.org/10.1371/JOURNAL.PONE.0226428>,
-        "pmcid:PMC6914332",
-        "pubmed:31841564" ;
-    sc:description """A Python toolbox for investigating the association between gaze allocation and decision behaviour.
-
-Free document hosting provided by Read the Docs.
-
-||| NAME EQUAL TO (PUB. DIFFERENT) bio.tools/GLAMbox""" ;
-    sc:featureList edam:operation_0337,
-        edam:operation_2426,
-        edam:operation_3435,
-        edam:operation_3436 ;
-    sc:name "GLAMbox_autogenerated" ;
-    sc:url "https://glambox.readthedocs.io" .
-
 <https://bio.tools/GLANET> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0749,
@@ -29820,18 +23827,8 @@ Free document hosting provided by Read the Docs.
     sc:url "https://github.com/burcakotlu/GLANET" ;
     biotools:primaryContact "Burçak Otlu" .
 
-<https://bio.tools/GLIOTRAIN> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_2640,
-        edam:topic_3334,
-        edam:topic_3342 ;
-    sc:citation <https://doi.org/10.1093/NEUONC/NOY139.242>,
-        "pmcid:PMC6144751" ;
-    sc:description "> CORRECT NAME OF TOOL COULD ALSO BE 'P04.08 GLIOTRAIN', 'ConclusionGLIOTRAIN', 'ResultsGLIOTRAIN' | Exploiting Glioblastoma intractability to address European research training needs in translational brain tumour research, cancer systems medicine and integrative multi-omics | An estimated 240,000 cases of brain and nervous system tumours are diagnosed every year, worldwide and Glioblastoma (GBM) is the most frequent and aggressive brain tumour. New treatment options and effective precision medicine therapies are urgently required. GLIOTRAIN is a multi-sectoral industry-academia collaboration, funded by the European Union's Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie ITN initiative, that will work to identify novel strategies to treat GBM as well as investigating resistance mechanisms in this devastating disease | A MARIE SKŁODOWSKA-CURIE ACTIONS (MSCA) Innovative Training Network (ITN)" ;
-    sc:name "GLIOTRAIN" ;
-    sc:url "http://www.gliotrain.eu" .
-
 <https://bio.tools/GLM-PCA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2229,
@@ -29852,7 +23849,7 @@ Implements a generalized version of principal components analysis (GLM-PCA) for
     sc:url "https://cran.r-project.org/web/packages/glmpca/index.html" .
 
 <https://bio.tools/GLOSSary> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0099,
@@ -29869,7 +23866,7 @@ Implements a generalized version of principal components analysis (GLM-PCA) for
     sc:url "http://bioinfo.szn.it/glossary/" .
 
 <https://bio.tools/GLUE> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0781,
@@ -29893,7 +23890,7 @@ Implements a generalized version of principal components analysis (GLM-PCA) for
         "Robert Gifford" .
 
 <https://bio.tools/GLycan_Array_Dashboard> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3068,
@@ -29914,7 +23911,7 @@ Implements a generalized version of principal components analysis (GLM-PCA) for
     sc:url "https://glycotoolkit.com/Tools/GLAD/" .
 
 <https://bio.tools/GMA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2885,
@@ -29936,7 +23933,7 @@ Implements a generalized version of principal components analysis (GLM-PCA) for
     biotools:primaryContact "Jian-Feng Liu" .
 
 <https://bio.tools/GMCLDA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_0659,
@@ -29951,7 +23948,7 @@ Recently, increasing evidences have indicated that dysregulations of long non-co
     sc:url "https://github.com/bioinfomaticsCSU/GMCLDA" .
 
 <https://bio.tools/GMpi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0780,
         edam:topic_3385,
@@ -29964,7 +23961,7 @@ Recently, increasing evidences have indicated that dysregulations of long non-co
     sc:url "https://github.com/BrandinGrindstaff/GMpi" .
 
 <https://bio.tools/GMrepo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0219,
         edam:topic_0625,
@@ -29976,21 +23973,8 @@ Recently, increasing evidences have indicated that dysregulations of long non-co
     sc:name "GMrepo" ;
     sc:url "https://gmrepo.humangut.info" .
 
-<https://bio.tools/GMultM> a sc:SoftwareApplication ;
-    sc:citation "pubmed:31855550" ;
-    sc:description """Generalized Multiplicative Model for Assessing Outcomes in Psychotherapy.
-
-The study presents further development and application of generalized multiplicative models (GMultM) for assessing outcomes in psychotherapy. GMultM is a flexible nonlinear regression method which is able to predict the impact of subjects' psychological variables (common factors) as well as theirchanges on the outcomes of cognitive-behavioral therapy and rhythmic-movement therapy.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'RMT'""" ;
-    sc:featureList edam:operation_3659 ;
-    sc:name "GMultM" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31855550" .
-
 <https://bio.tools/GO2Vec> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0128,
@@ -30008,7 +23992,7 @@ BACKGROUND:Semantic similarity between Gene Ontology (GO) terms is a fundamental
     sc:url "https://github.com/xszhong/GO2Vec" .
 
 <https://bio.tools/GOMAP> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0196,
@@ -30035,7 +24019,7 @@ These datasets generated by GOMAP are new high-coverage and reproducible functio
     sc:url "https://dill-picl.org/projects/gomap/gomap-datasets/" .
 
 <https://bio.tools/GOPHER> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0632,
@@ -30058,7 +24042,7 @@ These datasets generated by GOMAP are new high-coverage and reproducible functio
     biotools:primaryContact "The Jackson Laboratory" .
 
 <https://bio.tools/GOT-10k> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_3382,
@@ -30076,7 +24060,7 @@ A large, high-diversity, one-shot database for generic object tracking in the wi
     sc:url "http://got-10k.aitestunion.com" .
 
 <https://bio.tools/GOTrapper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0203,
@@ -30098,7 +24082,7 @@ A large, high-diversity, one-shot database for generic object tracking in the wi
     biotools:primaryContact "Hezha Hassan" .
 
 <https://bio.tools/GOcats> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0102,
@@ -30114,7 +24098,7 @@ A large, high-diversity, one-shot database for generic object tracking in the wi
     sc:url "https://gocats.readthedocs.io" .
 
 <https://bio.tools/GOnet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0121,
@@ -30136,7 +24120,7 @@ A large, high-diversity, one-shot database for generic object tracking in the wi
     biotools:primaryContact "Mikhail Pomaznoy" .
 
 <https://bio.tools/GPCRmd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0176,
@@ -30157,7 +24141,7 @@ GPCRmd is an online platform with web-based visualization capabilities and a com
     sc:url "http://gpcrmd.org/" .
 
 <https://bio.tools/GPI-anchor_biosynthesis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
@@ -30180,7 +24164,7 @@ GPCRmd is an online platform with web-based visualization capabilities and a com
     biotools:primaryContact <https://orcid.org/0000-0001-9713-7107> .
 
 <https://bio.tools/GPRED-GC> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0114,
         edam:topic_0622,
@@ -30204,7 +24188,7 @@ gene prediction tool for finding genes with highly variable GC contents such as
     sc:url "https://sourceforge.net/projects/gpred-gc/" .
 
 <https://bio.tools/GPSRdocker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -30222,32 +24206,8 @@ GPSRdocker is a docker-based container that provides a resources on Genomics, Pr
     sc:name "GPSRdocker" ;
     sc:url "https://webs.iiitd.edu.in/gpsrdocker" .
 
-<https://bio.tools/GPU> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0176,
-        edam:topic_0610,
-        edam:topic_2275,
-        edam:topic_3314,
-        edam:topic_3316 ;
-    sc:citation <https://doi.org/10.20944/PREPRINTS201912.0223.V1> ;
-    sc:description """Developing Efficient Discrete Simulations on Multi-Core and GPU Architectures.
-
-High performance computing on graphics processing units.
-
-Redirecting to http://www.ibiblio.org.
-
-High performance computing on graphics processing units (GPU): AMD, ATI and nVidia; OpenCL, CUDA; algorithms, science and applications; GPGPU.
-
-Sparse matrix–vector multiplication (SpMV) kernel dominates the computing cost in numerous applications. Most of the existing studies dedicated to improving this kernel have been targeting just one type of processing units, mainly multicore CPUs or graphics processing units (GPUs), and have not explored the potential of the recent, rapidly emerging, CPU-GPU heterogeneous platforms. To take […].
-
-||| CORRECT NAME OF TOOL COULD ALSO BE '8259CL', 'AWS', 'with48cores', '9900k'""" ;
-    sc:featureList edam:operation_0478,
-        edam:operation_2476,
-        edam:operation_3891 ;
-    sc:name "GPU" ;
-    sc:url "http://gpgpu.org" .
-
 <https://bio.tools/GPUAM> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_3314 ;
     sc:citation <https://doi.org/10.1021/ACS.JCIM.8B00951>,
@@ -30265,7 +24225,7 @@ Sparse matrix–vector multiplication (SpMV) kernel dominates the computing cost
     biotools:primaryContact "Jorge Garza" .
 
 <https://bio.tools/GPress> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_0780,
@@ -30287,7 +24247,7 @@ Here, we will use the test files to provide an example of how to use GPress. We
     sc:url "https://github.com/qm2/gpress" .
 
 <https://bio.tools/GPseudoClust> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3170,
@@ -30306,7 +24266,7 @@ Code for the GPseudoClust method, including pre- and postprocessing steps. Magda
     sc:url "https://github.com/magStra/GPseudoClust" .
 
 <https://bio.tools/GRAM> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3169,
@@ -30322,7 +24282,7 @@ Code for the GPseudoClust method, including pre- and postprocessing steps. Magda
     sc:url "https://github.com/gersteinlab/GRAM" .
 
 <https://bio.tools/GRANAR> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
@@ -30341,7 +24301,7 @@ Code for the GPseudoClust method, including pre- and postprocessing steps. Magda
     biotools:primaryContact "Guillaume Lobet" .
 
 <https://bio.tools/GRANVIL> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0625,
@@ -30361,7 +24321,7 @@ Code for the GPseudoClust method, including pre- and postprocessing steps. Magda
     sc:url "https://www.geenivaramu.ee/en/tools/granvil" .
 
 <https://bio.tools/GRASE> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3174,
         edam:topic_3697,
@@ -30377,7 +24337,7 @@ Code for the GPseudoClust method, including pre- and postprocessing steps. Magda
     sc:url "http://adsteen.shinyapps.io/grase" .
 
 <https://bio.tools/GRASS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3382 ;
@@ -30390,7 +24350,7 @@ GRASS GIS is a free Geographic Information System (GIS) software used for geospa
     sc:url "http://grass.osgeo.org" .
 
 <https://bio.tools/GREIN> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3308,
@@ -30413,7 +24373,7 @@ GRASS GIS is a free Geographic Information System (GIS) software used for geospa
     biotools:primaryContact <https://orcid.org/0000-0003-4510-3102> .
 
 <https://bio.tools/GRIBCG> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_0780,
@@ -30431,7 +24391,7 @@ GRASS GIS is a free Geographic Information System (GIS) software used for geospa
     biotools:primaryContact "B. Merritt" .
 
 <https://bio.tools/GRN> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0659,
@@ -30445,7 +24405,7 @@ GRASS GIS is a free Geographic Information System (GIS) software used for geospa
     sc:url "https://dcolin.shinyapps.io/CancerGRN/" .
 
 <https://bio.tools/GRO2LAM> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0176,
         edam:topic_0749,
@@ -30464,7 +24424,7 @@ GRASS GIS is a free Geographic Information System (GIS) software used for geospa
     sc:url "https://github.com/hernanchavezthielemann/GRO2LAM" .
 
 <https://bio.tools/GRONS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0625,
@@ -30486,25 +24446,8 @@ Genetic Resources Of Nicotine and Smoking (GRONS) is a database devoted to provi
     sc:name "GRONS" ;
     sc:url "http://bioinfo.tmu.edu.cn/GRONS/" .
 
-<https://bio.tools/GRSMF> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0128,
-        edam:topic_0154,
-        edam:topic_2640,
-        edam:topic_3474 ;
-    sc:citation <https://doi.org/10.1186/S12859-019-3197-3>,
-        "pmcid:PMC6929405",
-        "pubmed:31870274" ;
-    sc:description """Predicting synthetic lethal interactions in human cancers using graph regularized self-representative matrix factorization.
-
-The prediction results of GRSMF""" ;
-    sc:featureList edam:operation_0440,
-        edam:operation_2492,
-        edam:operation_2495 ;
-    sc:name "GRSMF" ;
-    sc:url "https://github.com/Oyl-CityU/GRSMF" .
-
 <https://bio.tools/GRaMM> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0634,
@@ -30525,7 +24468,7 @@ Accumulating evidence points to the strong and complicated associations between
     sc:url "https://github.com/chentianlu/GRaMM" .
 
 <https://bio.tools/GSAn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0602,
@@ -30543,252 +24486,8 @@ Accumulating evidence points to the strong and complicated associations between
     sc:softwareHelp <https://gsan.labri.fr/documentation> ;
     sc:url "https://gsan.labri.fr" .
 
-<https://bio.tools/GSE104854> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0659,
-        edam:topic_0749,
-        edam:topic_3170,
-        edam:topic_3421,
-        edam:topic_3512 ;
-    sc:citation <https://doi.org/10.1002/MGG3.991>,
-        "pmcid:PMC6900391",
-        "pubmed:31573758" ;
-    sc:description """Circular RNA circ-TSPAN4 promotes lung adenocarcinoma metastasis by upregulating ZEB1 via sponging miR-665.
-
-NCBI's Gene Expression Omnibus (GEO) is a public archive and resource for gene expression data.
-
-GEO help: Mouse over screen elements for information.
-
-Scope: Self Platform Samples Series Family Format: HTML SOFT MINiML Amount: Brief Quick GEO accession:.
-
-||| NAME (GSE104854) SIMILAR TO (PUB. DIFFERENT) bio.tools/GSE33335 (GSE33335), bio.tools/GSE56348 (GSE56348), bio.tools/GSE117578 (GSE117578), bio.tools/gse (GSE).
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'miR-665 upregulating ZEB1', 'circ-TSPAN4 miR-665 ZEB1', 'circ-TSPAN4', 'miR-665'""" ;
-    sc:featureList edam:operation_0463,
-        edam:operation_2495,
-        edam:operation_3799 ;
-    sc:name "GSE104854" ;
-    sc:url "http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE104854" .
-
-<https://bio.tools/GSE117578> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0749,
-        edam:topic_3308,
-        edam:topic_3518 ;
-    sc:citation <https://doi.org/10.1016/J.DIB.2019.01.017>,
-        "pmcid:PMC6659985",
-        "pubmed:31372377" ;
-    sc:description "> MEDIUM CONFIDENCE! | > NAME (GSE117578) SIMILAR TO (PUB. DIFFERENT) bio.tools/gse (GSE) | > CORRECT NAME OF TOOL COULD ALSO BE 'Gene Expression' (bio.tools/gene_expression), 'Gene Expression Omnibus' | Datasets of microarray analysis to identify Gpr137b-dependent interleukin-4-responsive genes in the mouse macrophage cell line RAW264 | NCBI's Gene Expression Omnibus (GEO) is a public archive and resource for gene expression data | GEO help: Mouse over screen elements for information | Scope: Self Platform Samples Series Family Format: HTML SOFT MINiML Amount: Brief Quick GEO accession:" ;
-    sc:featureList edam:operation_0224,
-        edam:operation_0531,
-        edam:operation_3431 ;
-    sc:name "GSE117578" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE117578" .
-
-<https://bio.tools/GSE33335> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_2640,
-        edam:topic_3308,
-        edam:topic_3518 ;
-    sc:citation <https://doi.org/10.1002/JCP.29177>,
-        "pubmed:31498430" ;
-    sc:description "> MEDIUM CONFIDENCE! | > NAME (GSE33335) SIMILAR TO (PUB. DIFFERENT) bio.tools/gse (GSE) | > CORRECT NAME OF TOOL COULD ALSO BE 'GSE54129', 'GPNMB', 'gastric', 'DEGs' | Transcriptome analysis reveals GPNMB as a potential therapeutic target for gastric cancer | Expression data from gastric tissues: Cancer Samples vs. Matched Adjacent Noncancerous Samples | To elucidate gene expression associated with copy number changes, we performed a genome-wide copy number and expression microarray analysis of 25 pairs of gastric tissues | db=gds:term=gse33335:query=1:qty=2:blobid=NCID_1_2569115_130.14.22.76_9001_1573757527_1385458599_0MetA0_S_MegaStore_F_1:ismultiple=true:min_list=5:max_list=20:def_tree=20:def_list=:def_view=:url=/Taxonomy/backend/subset.cgi?:trace_url=/stat?" ;
-    sc:featureList edam:operation_0533,
-        edam:operation_2436,
-        edam:operation_3258 ;
-    sc:name "GSE33335" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/gds/?term=gse33335" .
-
-<https://bio.tools/GSE44076> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0203,
-        edam:topic_0602,
-        edam:topic_2640,
-        edam:topic_3295,
-        edam:topic_3519 ;
-    sc:citation <https://doi.org/10.1002/JCP.29368>,
-        "pubmed:31709538" ;
-    sc:description """Gene expression and methylation profiles identified CXCL3 and CXCL8 as key genes for diagnosis and prognosis of colon adenocarcinoma.
-
-NCBI's Gene Expression Omnibus (GEO) is a public archive and resource for gene expression data.
-
-GEO help: Mouse over screen elements for information.
-
-Scope: Self Platform Samples Series Family Format: HTML SOFT MINiML Amount: Brief Quick GEO accession:.
-
-||| NAME (GSE44076) SIMILAR TO (PUB. DIFFERENT) bio.tools/GSE33335 (GSE33335), bio.tools/GSE56348 (GSE56348), bio.tools/GSE117578 (GSE117578), bio.tools/gse (GSE).
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'CXCL3 CXCL8', 'COAD', 'CXCL8', 'CXCL3 CXCL8 COAD'""" ;
-    sc:featureList edam:operation_2495,
-        edam:operation_3435,
-        edam:operation_3501 ;
-    sc:name "GSE44076" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE44076" .
-
-<https://bio.tools/GSE56348> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0128,
-        edam:topic_0203,
-        edam:topic_0634 ;
-    sc:citation <https://doi.org/10.3892/IJMM.2019.4291>,
-        "pmcid:PMC6713409",
-        "pubmed:31364721" ;
-    sc:description "> MEDIUM CONFIDENCE! | > NAME (GSE56348) SIMILAR TO (PUB. DIFFERENT) bio.tools/gse (GSE) | > CORRECT NAME OF TOOL COULD ALSO BE 'GSE36074', 'GSE18224', 'cardiac remodeling', 'DEGs' | Identification of differentially expressed genes and preliminary validations in cardiac pathological remodeling induced by transverse aortic constriction | NCBI's Gene Expression Omnibus (GEO) is a public archive and resource for gene expression data | GEO help: Mouse over screen elements for information | Scope: Self Platform Samples Series Family Format: HTML SOFT MINiML Amount: Brief Quick GEO accession:" ;
-    sc:featureList edam:operation_2492,
-        edam:operation_3223,
-        edam:operation_3501 ;
-    sc:name "GSE56348" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE56348" .
-
-<https://bio.tools/GSE59867> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0203,
-        edam:topic_0602,
-        edam:topic_0634,
-        edam:topic_3512,
-        edam:topic_3518 ;
-    sc:citation <https://doi.org/10.1186/S12944-019-1131-3>,
-        "pmcid:PMC6813054",
-        "pubmed:31647035" ;
-    sc:description """Potential molecular mechanism of ACE gene at different time points in STEMI patients based on genome-wide microarray dataset.
-
-NCBI's Gene Expression Omnibus (GEO) is a public archive and resource for gene expression data.
-
-GEO help: Mouse over screen elements for information.
-
-Scope: Self Platform Samples Series Family Format: HTML SOFT MINiML Amount: Brief Quick GEO accession:.
-
-||| NAME (GSE59867) SIMILAR TO (PUB. DIFFERENT) bio.tools/GSE33335 (GSE33335), bio.tools/GSE56348 (GSE56348), bio.tools/GSE117578 (GSE117578), bio.tools/gse (GSE).
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'STEMI', 'admission', 'ACE' (bio.tools/ace_insect; bio.tools/ace), 'discharge'""" ;
-    sc:featureList edam:operation_2436,
-        edam:operation_2497,
-        edam:operation_3463 ;
-    sc:name "GSE59867" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE59867" .
-
-<https://bio.tools/GSE64617> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0203,
-        edam:topic_0602,
-        edam:topic_0659,
-        edam:topic_3512,
-        edam:topic_3518 ;
-    sc:citation <https://doi.org/10.1080/00207454.2019.1701452>,
-        "pubmed:31801399" ;
-    sc:description """Prediction and analysis of weighted genes in isoflurane induced general anesthesia based on network analysis.
-
-Purpose: Isoflurane is still wildly used in the developing countries and isoflurane-induced general anesthesia gives rise to serious side effects. The aim of the present study was to investigate the molecular mechanism on isoflurane-induced general anesthesia. Materials and methods: The microarray data of GSE64617 dataset was downloaded from Gene Expression Omnibus (GEO) database. A total of 755 DEGs were identified using the limma package in the R programming language. Gene Ontology (GO) enrichment analysis and Kyoto Encyclopedia of Genes, and Genomes (KEGG) pathways enrichment were conducted for DEGs.
-
-||| NAME (GSE64617) SIMILAR TO (PUB. DIFFERENT) bio.tools/GSE33335 (GSE33335), bio.tools/GSE56348 (GSE56348), bio.tools/GSE117578 (GSE117578), bio.tools/gse (GSE).
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'isoflurane', 'anesthesia', 'HMBOX1', 'isoflurane-induced'""" ;
-    sc:featureList edam:operation_1781,
-        edam:operation_3223,
-        edam:operation_3439,
-        edam:operation_3501 ;
-    sc:name "GSE64617" ;
-    sc:url "ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE64nnn/GSE64617/matrix/" .
-
-<https://bio.tools/GSE75037> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0203,
-        edam:topic_0602,
-        edam:topic_2640,
-        edam:topic_3379,
-        edam:topic_3518 ;
-    sc:citation <https://doi.org/10.3892/OL.2019.10845>,
-        "pmcid:PMC6781748",
-        "pubmed:31611968" ;
-    sc:description """Exploration of estrogen receptor-associated hub genes and potential molecular mechanisms in non-smoking females with lung adenocarcinoma using integrated bioinformatics analysis.
-
-NCBI's Gene Expression Omnibus (GEO) is a public archive and resource for gene expression data.
-
-GEO help: Mouse over screen elements for information.
-
-Scope: Self Platform Samples Series Family Format: HTML SOFT MINiML Amount: Brief Quick GEO accession:.
-
-||| NAME (GSE75037) SIMILAR TO (PUB. DIFFERENT) bio.tools/GSE33335 (GSE33335), bio.tools/GSE56348 (GSE56348), bio.tools/GSE117578 (GSE117578), bio.tools/gse (GSE).
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'GSE32863', 'DEGs', 'non-smoking', 'GEO' (bio.tools/GEO)""" ;
-    sc:featureList edam:operation_2422,
-        edam:operation_2495,
-        edam:operation_3223,
-        edam:operation_3501 ;
-    sc:name "GSE75037" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=gse75037" .
-
-<https://bio.tools/GSE78092> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0637,
-        edam:topic_0659,
-        edam:topic_0749,
-        edam:topic_2640,
-        edam:topic_3512 ;
-    sc:citation <https://doi.org/10.1186/S12935-019-0975-Y>,
-        "pmcid:PMC6794874",
-        "pubmed:31636511" ;
-    sc:description """Identification of differentially expressed circRNAs and a novel hsa_circ_0000144 that promote tumor growth in gastric cancer.
-
-CricRNA expression profiling in human gastric cancer.
-
-Using the highly sensitive cricRNA array, we screened 13617 circRNAs abundant in the human gastric cancer and Adjacent normal gastric mucosa tissues, and the function of differentially expressed circRANs were analyzed by bioinformatics. The...
-
-db=gds:term=GSE78092:query=1:qty=2:blobid=NCID_1_164614383_130.14.22.76_9001_1578306930_592117587_0MetA0_S_MegaStore_F_1:ismultiple=true:min_list=5:max_list=20:def_tree=20:def_list=:def_view=:url=/Taxonomy/backend/subset.cgi?:trace_url=/stat?.
-
-||| NAME (GSE78092) SIMILAR TO (PUB. DIFFERENT) bio.tools/GSE33335 (GSE33335), bio.tools/GSE56348 (GSE56348), bio.tools/GSE117578 (GSE117578), bio.tools/gse (GSE).
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'miRNAs' (bio.tools/miRNAs), 'hsa_circ_0000144', 'circRNAs', 'circRNA' (bio.tools/circRNA)""" ;
-    sc:featureList edam:operation_0463,
-        edam:operation_2495,
-        edam:operation_3435,
-        edam:operation_3446,
-        edam:operation_3695 ;
-    sc:name "GSE78092" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/gds/?term=GSE78092" .
-
-<https://bio.tools/GSE80614> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0749,
-        edam:topic_3421,
-        edam:topic_3512,
-        edam:topic_3518,
-        edam:topic_3557 ;
-    sc:citation <https://doi.org/10.1111/CPR.12709>,
-        "pubmed:31638302" ;
-    sc:description """CRYAB promotes osteogenic differentiation of human bone marrow stem cells via stabilizing β-catenin and promoting the Wnt signalling.
-
-NCBI's Gene Expression Omnibus (GEO) is a public archive and resource for gene expression data.
-
-GEO help: Mouse over screen elements for information.
-
-Scope: Self Platform Samples Series Family Format: HTML SOFT MINiML Amount: Brief Quick GEO accession:.
-
-||| NAME (GSE80614) SIMILAR TO (PUB. DIFFERENT) bio.tools/GSE33335 (GSE33335), bio.tools/GSE56348 (GSE56348), bio.tools/GSE117578 (GSE117578), bio.tools/gse (GSE).
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'GEO' (bio.tools/GEO), 'BMSCs osteogenic', 'BMSCs osteogenic differentiation', 'BMSCs'""" ;
-    sc:featureList edam:operation_0224,
-        edam:operation_2495,
-        edam:operation_3223 ;
-    sc:name "GSE80614" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE80614.66" .
-
-<https://bio.tools/GSEA_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0102,
-        edam:topic_0199,
-        edam:topic_2640,
-        edam:topic_3407,
-        edam:topic_3676 ;
-    sc:citation <https://doi.org/10.1186/S12881-019-0936-2>,
-        "pmcid:PMC6925869",
-        "pubmed:31864301" ;
-    sc:description """POLE mutations improve the prognosis of endometrial cancer via regulating cellular metabolism through AMF/AMFR signal transduction.
-
-Gene Set Enrichment Analysis (GSEA) is a computational method that determines whether an a priori defined set of genes shows statistically.
-
-20-Aug-2019: GSEA 4.0.0 released. This release includes support for MSigDB 7.0, plus major internal updates for Java 11 support and performance improvements. See the release notes for more information.
-
-||| NAME EQUAL TO (PUB. DIFFERENT) bio.tools/gsea.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'AMF PGI AMFR gp78', 'AMFR gp78', 'PGI AMFR gp78', 'AMF PGI AMFR'""" ;
-    sc:featureList edam:operation_2436,
-        edam:operation_3503,
-        edam:operation_3659 ;
-    sc:name "GSEA_autogenerated" ;
-    sc:url "http://www.broadinstitute.org/gsea/" .
-
 <https://bio.tools/GSSO> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0634,
@@ -30802,7 +24501,7 @@ Gene Set Enrichment Analysis (GSEA) is a computational method that determines wh
     sc:url "https://github.com/Superraptor/GSSO" .
 
 <https://bio.tools/GScluster> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_3517,
@@ -30827,7 +24526,7 @@ Gene Set Enrichment Analysis (GSEA) is a computational method that determines wh
         "Seon-Young Kim" .
 
 <https://bio.tools/GTA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0623,
@@ -30843,7 +24542,7 @@ Gene Set Enrichment Analysis (GSEA) is a computational method that determines wh
     sc:url "https://github.com/ecg-lab/GTA-Hunter-v1" .
 
 <https://bio.tools/GTACG> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0623,
         edam:topic_0625,
@@ -30858,7 +24557,7 @@ Gene Set Enrichment Analysis (GSEA) is a computational method that determines wh
     sc:url "https://github.com/caiorns/GTACG-backend" .
 
 <https://bio.tools/GTCreator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3382 ;
     sc:citation <https://doi.org/10.1007/s11548-018-1864-x>,
@@ -30874,12 +24573,19 @@ Gene Set Enrichment Analysis (GSEA) is a computational method that determines wh
     biotools:primaryContact "CVC-Colon" .
 
 <https://bio.tools/GTDB> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0194,
         edam:topic_0637,
         edam:topic_3174 ;
-    sc:citation <https://doi.org/10.1101/771964> ;
+    sc:citation <https://doi.org/10.1038/s41564-021-00918-8>,
+        <https://doi.org/10.1038/s41587-020-0501-8>,
+        <https://doi.org/10.1093/nar/gkab776>,
+        <https://doi.org/10.1101/771964>,
+        "pmcid:PMC8728215",
+        "pubmed:32341564",
+        "pubmed:34155373",
+        "pubmed:34520557" ;
     sc:description "Selection of representative genomes for 24,706 bacterial and archaeal species clusters provide a complete genome-based taxonomy | Toolkit for establishing, updating, and validating GTDB species clusters" ;
     sc:featureList edam:operation_0544,
         edam:operation_3432,
@@ -30889,7 +24595,7 @@ Gene Set Enrichment Analysis (GSEA) is a computational method that determines wh
     sc:url "https://gtdb.ecogenomic.org" .
 
 <https://bio.tools/GTDB-Tk> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0637,
@@ -30912,7 +24618,7 @@ GTDB-Tk is a software toolkit for assigning objective taxonomic classifications
     sc:url "https://github.com/ecogenomics/gtdbtk" .
 
 <https://bio.tools/GTM> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0194 ;
@@ -30926,29 +24632,8 @@ Abstract Phylogeny estimation is an important part of much biological research,
     sc:name "GTM" ;
     sc:url "https://github.com/vlasmirnov/GTM" .
 
-<https://bio.tools/GTX_Digest_VCF> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0218,
-        edam:topic_0769,
-        edam:topic_3168,
-        edam:topic_3474 ;
-    sc:citation <https://doi.org/10.1186/S12920-019-0637-X>,
-        "pmcid:PMC6923899",
-        "pubmed:31856831" ;
-    sc:description """an online NGS data interpretation system based on intelligent gene ranking and large-scale text mining.
-
-Contact: digest@gtxlab.com.
-
-Use without Registration.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'VCF'""" ;
-    sc:featureList edam:operation_0306,
-        edam:operation_3226,
-        edam:operation_3227 ;
-    sc:name "GTX Digest VCF" ;
-    sc:url "http://vcf.gtxlab.com" .
-
 <https://bio.tools/GUESSmyLT> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:citation <https://doi.org/10.21105/joss.01344> ;
     sc:description "Software to guess the RNA-Seq library type of paired and single end read files using mapping and gene annotation." ;
@@ -30960,7 +24645,7 @@ Use without Registration.
     sc:url "https://github.com/NBISweden/GUESSmyLT" .
 
 <https://bio.tools/GUV-AP> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0820,
@@ -30983,7 +24668,7 @@ Use without Registration.
         "Yves Mély" .
 
 <https://bio.tools/GUcal> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3489,
         edam:topic_3520 ;
@@ -30997,7 +24682,7 @@ GUcal 1.1c - Internal / bracketing standard approach with GlycoStore database"""
     sc:url "https://www.gucal.hu" .
 
 <https://bio.tools/GW6> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3304,
@@ -31013,7 +24698,7 @@ GUcal 1.1c - Internal / bracketing standard approach with GlycoStore database"""
     biotools:primaryContact "marco.bilucaglia" .
 
 <https://bio.tools/GWAS-Flow> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0625,
@@ -31028,7 +24713,7 @@ GUcal 1.1c - Internal / bracketing standard approach with GlycoStore database"""
     sc:url "https://github.com/Joyvalley/GWAS_Flow" .
 
 <https://bio.tools/GWAS_Central> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0625,
@@ -31060,7 +24745,7 @@ GWAS Central provides a complete Study metadata file for use in data citation re
     sc:url "https://www.gwascentral.org" .
 
 <https://bio.tools/GWASinlps> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_2885,
@@ -31082,7 +24767,7 @@ GWAS Central provides a complete Study metadata file for use in data citation re
     biotools:primaryContact "Nilotpal Sanyal" .
 
 <https://bio.tools/GWASinspector> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3517,
         edam:topic_3572 ;
@@ -31096,30 +24781,8 @@ GWAS Central provides a complete Study metadata file for use in data citation re
     sc:softwareVersion "1.3.4" ;
     sc:url "http://gwasinspector.com/" .
 
-<https://bio.tools/GWEP> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0621,
-        edam:topic_0634,
-        edam:topic_0749,
-        edam:topic_3399 ;
-    sc:citation <https://doi.org/10.1093/GERONI/IGZ038.2972>,
-        <https://doi.org/10.1093/GERONI/IGZ038.3392>,
-        "pmcid:PMC6845271",
-        "pmcid:PMC6847619" ;
-    sc:description """PARTNERING IN GERIATRICS WORKFORCE ENHANCEMENT PROGRAMS.
-
-EDUCATIONAL OUTCOMES OF DEMENTIA CAREGIVER CONFERENCES IN RURAL UTAH.
-
-AbstractTo achieve their healthcare system transformational goals to improve care for older adults, Geriatrics Workforce Enhancement Programs (GWEPs) facilitate the building of strong relationships among academia, community-based organizations, and primary care networks. Each GWEP develops strategies to formalize collaborations and build sustainable networks to meet program goals while addressing partner needs. Unique models from four GWEPs addressing stakeholder engagement are described, and factors facilitating collaboration are explored. One GWEP achieves mutual goals by collaborating with statewide coalitions that have a history of successful partnerships.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'GERIATRIC WORKFORCE ENHANCEMENT PROGRAM', 'caregiver', 'ADKS', 'dementia'""" ;
-    sc:featureList edam:operation_3435 ;
-    sc:name "GWEP" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6845271/" .
-
 <https://bio.tools/GWPC> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0593,
         edam:topic_3384,
@@ -31133,7 +24796,7 @@ AbstractTo achieve their healthcare system transformational goals to improve car
     sc:url "https://github.com/neuroanatomy/GWPC" .
 
 <https://bio.tools/GalaxEast> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_3391 ;
     sc:description "GalaxEast aims at providing a large range of bioinformatics tools for the analysis of various types of Omics data. It supports reproducible computational research by providing an environment for performing and recording bioinformatics analyses." ;
@@ -31141,14 +24804,14 @@ AbstractTo achieve their healthcare system transformational goals to improve car
     sc:url "http://www.galaxeast.fr/" .
 
 <https://bio.tools/GalaxyCat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0091 ;
     sc:description "An online catalog that lists all the tools available on various Galaxy instances and thus allows through a simple web interface to quickly find on which instances a tool is usable." ;
     sc:name "GalaxyCat" ;
     sc:url "http://galaxycat.france-bioinformatique.fr/" .
 
 <https://bio.tools/Galaxy_Pasteur> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:description "A wide variety of tools from the Galaxy instance of Institut Pasteur, France." ;
@@ -31156,7 +24819,7 @@ AbstractTo achieve their healthcare system transformational goals to improve car
     sc:url "https://galaxy.pasteur.fr/" .
 
 <https://bio.tools/Galaxy_Tools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:description "Tools provided by the Galaxy workbench." ;
@@ -31170,10 +24833,9 @@ AbstractTo achieve their healthcare system transformational goals to improve car
 
 <https://bio.tools/Galaxy_scater> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3112" ;
-            sc:name "Gene expression matrix" ;
-            sc:sameAs "http://edamontology.org/data_3112" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3112" ;
+            sc:name "Gene expression matrix" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:citation <https://doi.org/10.1101/724047> ;
     sc:description "We have developed a range of practical scripts, together with their corresponding Galaxy wrappers, that make scRNA-seq training and quality-control accessible to researchers previously daunted by the prospect of scRNA-seq analysis. We implement a ‘visualise-filter-visualise’ paradigm through simple command-line tools that use the Loom format to exchange data between the tools. The point-and-click nature of Galaxy makes it easy to assess, visualise, and filter scRNA-seq data from short-read sequencing data." ;
@@ -31187,7 +24849,7 @@ AbstractTo achieve their healthcare system transformational goals to improve car
     biotools:primaryContact <https://orcid.org/0000-0002-5003-1425> .
 
 <https://bio.tools/Gall-ID> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Bioinformatics portal" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0637,
@@ -31205,22 +24867,8 @@ AbstractTo achieve their healthcare system transformational goals to improve car
     sc:name "Gall-ID" ;
     sc:url "http://gall-id.cgrb.oregonstate.edu/" .
 
-<https://bio.tools/GamePlan4Care> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0108 ;
-    sc:citation <https://doi.org/10.1093/GERONI/IGZ038.2493>,
-        "pmcid:PMC6846234" ;
-    sc:description """AN ONLINE TRANSLATION OF REACH II REFINED THROUGH EARLY STAKEHOLDER USABILITY TESTING.
-
-AbstractDespite a number of evidences on the implementation of multicomponent education and support programs to improve the lives of dementia caregivers, there is still a need to adapt these interventions to various implementation settings and preferences of a new generation of caregivers. In this study, we present the development and usability testing of a dementia caregiver support program, GamePlan4Care (GP4C), an online translation of the Resources for Enhancing Alzheimer’s Caregiver Health II (REACH II) intervention. The goal of the GP4C is to create an online family caregiver support system that would facilitate delivery of an evidence-based skills-training and support for dementia caregivers with the potential of both scalability and sustainability.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'GP4C', 'dementia caregivers', 'caregivers', 'caregiver'""" ;
-    sc:name "GamePlan4Care" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6846234/" .
-
 <https://bio.tools/GapMind> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0602,
@@ -31233,7 +24881,7 @@ AbstractDespite a number of evidences on the implementation of multicomponent ed
     sc:url "https://papers.genomics.lbl.gov/cgi-bin/gapView.cgi" .
 
 <https://bio.tools/Gapsplit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3398,
@@ -31252,7 +24900,7 @@ AbstractDespite a number of evidences on the implementation of multicomponent ed
     biotools:primaryContact "Paul A. Jensen" .
 
 <https://bio.tools/Garnett> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2229,
@@ -31268,7 +24916,7 @@ AbstractDespite a number of evidences on the implementation of multicomponent ed
     sc:url "https://cole-trapnell-lab.github.io/garnett" .
 
 <https://bio.tools/GazeVisual-Lib> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3382,
         edam:topic_3474,
@@ -31289,7 +24937,7 @@ The GazeVisual-Lib is a repository of software tools for practical evaluation of
     sc:url "http://github.com/anuradhakar49/GazeVisual-Lib" .
 
 <https://bio.tools/GeDex> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3068,
@@ -31306,7 +24954,7 @@ Abstract Motivation The genetic mechanisms involved in human diseases are fundam
     sc:url "https://bitbucket.org/laigen/gedex/src/master/" .
 
 <https://bio.tools/GeNeCK> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0749,
@@ -31329,7 +24977,7 @@ Abstract Motivation The genetic mechanisms involved in human diseases are fundam
     biotools:primaryContact "Minzhe Zhang" .
 
 <https://bio.tools/GePhEx> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2885,
         edam:topic_3298,
@@ -31349,7 +24997,7 @@ Abstract Motivation The genetic mechanisms involved in human diseases are fundam
     sc:url "https://gephex.ega-archive.org/" .
 
 <https://bio.tools/GemSIM> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:description "GemSIM is a software package for generating realistic simulated next-generation sequencing reads with quality score values. Both Illumina and Roche/454 reads (single or paired end) can be simulated using appropriate empirical error models." ;
@@ -31361,22 +25009,22 @@ Abstract Motivation The genetic mechanisms involved in human diseases are fundam
 
 <https://bio.tools/GenAPI> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2887" ;
-            sc:name "Nucleic acid sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2887" ] ;
+            sc:additionalType "http://edamontology.org/data_2887" ;
+            sc:encodingFormat "http://edamontology.org/format_1939" ;
+            sc:name "Nucleic acid sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0872" ;
-            sc:name "Phylogenetic tree" ;
-            sc:sameAs "http://edamontology.org/data_0872" ],
+            sc:additionalType "http://edamontology.org/data_2082" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Matrix" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ],
+            sc:additionalType "http://edamontology.org/data_0872" ;
+            sc:encodingFormat "http://edamontology.org/format_1910" ;
+            sc:name "Phylogenetic tree" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2082" ;
-            sc:name "Matrix" ;
-            sc:sameAs "http://edamontology.org/data_2082" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3508" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0091,
@@ -31393,7 +25041,7 @@ Abstract Motivation The genetic mechanisms involved in human diseases are fundam
     biotools:primaryContact "Migle Gabrielaite" .
 
 <https://bio.tools/GenBankFlatFileReader> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3053,
@@ -31410,7 +25058,7 @@ Abstract Motivation The genetic mechanisms involved in human diseases are fundam
     biotools:primaryContact "Turner Conrad" .
 
 <https://bio.tools/GenBank_taxonomy_tools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0637 ;
     sc:description "Utilities for manipulations and visualization tasks on GenBank taxonomic information." ;
@@ -31423,7 +25071,7 @@ Abstract Motivation The genetic mechanisms involved in human diseases are fundam
     sc:url "https://github.com/spond/gb_taxonomy_tools" .
 
 <https://bio.tools/GenESysV> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3673,
@@ -31443,29 +25091,8 @@ Abstract Motivation The genetic mechanisms involved in human diseases are fundam
     sc:url "https://github.com/ubccr/genesysv" ;
     biotools:primaryContact "Center for Computational Research" .
 
-<https://bio.tools/GenEx_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0089,
-        edam:topic_0203,
-        edam:topic_3489 ;
-    sc:citation <https://doi.org/10.1093/DATABASE/BAZ106>,
-        "pmcid:PMC6836710",
-        "pubmed:31697362" ;
-    sc:description """Enabling semantic queries across federated bioinformatics databases.
-
-Ontology Documentation generated by WIDOCO.
-
-Gene expression (GenEx) semantic model.
-
-||| NAME EQUAL TO (PUB. DIFFERENT) bio.tools/genex.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'Bgee' (bio.tools/bgee), 'SPARQL'""" ;
-    sc:featureList edam:operation_0224,
-        edam:operation_3282 ;
-    sc:name "GenEx_autogenerated" ;
-    sc:url "https://biosoda.github.io/genex/" .
-
 <https://bio.tools/GenFam> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0203,
@@ -31485,7 +25112,7 @@ Genome-scale studies using high-throughput sequencing (HTS) technologies generat
     sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31844835" .
 
 <https://bio.tools/GenGraph> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0622,
@@ -31505,7 +25132,7 @@ A repository for the GenGraph toolkit for the creation and manipulation of graph
     sc:url "https://github.com/jambler24/GenGraph" .
 
 <https://bio.tools/GenIE-Sys> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0780,
         edam:topic_3170,
@@ -31535,7 +25162,7 @@ Free document hosting provided by Read the Docs""" ;
     sc:url "https://geniesys.org" .
 
 <https://bio.tools/GenIO> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Web service" ;
     sc:applicationSubCategory edam:topic_3063,
@@ -31558,7 +25185,7 @@ Free document hosting provided by Read the Docs""" ;
     sc:url "https://bioinformatics.ibioba-mpsp-conicet.gov.ar/GenIO/index.php" .
 
 <https://bio.tools/GenTree> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0102,
@@ -31580,23 +25207,8 @@ Free document hosting provided by Read the Docs""" ;
     sc:url "http://gentree.ioz.ac.cn/index.php" ;
     biotools:primaryContact "ZhangLab" .
 
-<https://bio.tools/Gender_differences_bias_open_source> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3068,
-        edam:topic_3372,
-        edam:topic_3410 ;
-    sc:citation <https://doi.org/10.7287/PEERJ.PREPRINTS.1733V2> ;
-    sc:description """Pull request acceptance of women versus men.
-
-Guaranteeing the 'our' in source...
-
-Open source licenses are licenses that comply with the Open Source Definition — in brief, they allow software to be freely used, modified, and shared. To be approved by the Open Source Initiative (also known as the OSI), a license must go through the Open Source Initiative's license review process.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'women'""" ;
-    sc:name "Gender differences bias open source" ;
-    sc:url "http://opensource.org/licenses" .
-
 <https://bio.tools/Gene2vec> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -31617,7 +25229,7 @@ Open source licenses are licenses that comply with the Open Source Definition 
     biotools:primaryContact "Jingcheng Du" .
 
 <https://bio.tools/Gene4Denovo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0625,
@@ -31637,7 +25249,7 @@ De novo mutations (DNMs) significantly contribute to sporadic diseases, particul
     sc:url "http://www.genemed.tech/gene4denovo/" .
 
 <https://bio.tools/GeneBridge> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0153,
         edam:topic_0203,
@@ -31661,28 +25273,14 @@ Systems analysis toolkit containing Gene-Module Association Determination (G-MAD
     sc:name "GeneBridge" ;
     sc:url "https://github.com/lihaone/GeneBridge" .
 
-<https://bio.tools/GeneFishing> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0602,
-        edam:topic_3170,
-        edam:topic_3407 ;
-    sc:citation <https://doi.org/10.1073/PNAS.1820340116>,
-        "pmcid:PMC6754596",
-        "pubmed:31484776" ;
-    sc:description "> MEDIUM CONFIDENCE! | > HOMEPAGE MISSING! | GeneFishing to reconstruct context specific portraits of biological processes | Rapid advances in genomic technologies have led to a wealth of diverse data, from which novel discoveries can be gleaned through the application of robust statistical and computational methods. Here, we describe GeneFishing, a semisupervised computational approach to reconstruct context-specific portraits of biological processes by leveraging gene-gene coexpression information. GeneFishing incorporates multiple high-dimensional statistical ideas, including dimensionality reduction, clustering, subsampling, and results aggregation, to produce robust results. To illustrate the power of our method, we applied it using 21 genes involved in cholesterol metabolism as \"bait\" to \"fish out\" (or identify) genes not previously identified as being connected to cholesterol metabolism" ;
-    sc:featureList edam:operation_3463,
-        edam:operation_3660,
-        edam:operation_3766 ;
-    sc:name "GeneFishing" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31484776" .
-
 <https://bio.tools/GeneMarkS-T> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "Sets of assembled eukaryotic transcripts can be analyzed by the modified GeneMarkS algorithm (the set should be large enough to permit self-training). A single transcript can be analyzed by a special version of GeneMark.hmm with Heuristic models. A new advanced algorithm GeneMarkS-T was developed recently (manuscript sent to publisher)." ;
     sc:name "GeneMarkS-T" ;
     sc:url "http://topaz.gatech.edu/GeneMark/" .
 
 <https://bio.tools/GenePattern_notebook> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_2885,
         edam:topic_3295,
@@ -31707,7 +25305,7 @@ Systems analysis toolkit containing Gene-Module Association Determination (G-MAD
         <https://orcid.org/0000-0002-8718-8848> .
 
 <https://bio.tools/GenePy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Script" ;
     sc:applicationSubCategory edam:topic_0199,
@@ -31728,7 +25326,7 @@ Systems analysis toolkit containing Gene-Module Association Determination (G-MAD
     sc:url "https://github.com/UoS-HGIG/GenePy" .
 
 <https://bio.tools/GeneRax> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0102,
@@ -31743,7 +25341,7 @@ Systems analysis toolkit containing Gene-Module Association Determination (G-MAD
     sc:url "https://github.com/BenoitMorel/GeneRax" .
 
 <https://bio.tools/GeneSurrounder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -31767,7 +25365,7 @@ Systems analysis toolkit containing Gene-Module Association Determination (G-MAD
         "Sahil Shah" .
 
 <https://bio.tools/GeneSwitches> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0625,
@@ -31788,7 +25386,7 @@ The goal of GeneSwitches is to discover the order of gene-expression and functio
     sc:url "https://geneswitches.ddnetbio.com" .
 
 <https://bio.tools/GeneVetter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0625,
@@ -31811,7 +25409,7 @@ The goal of GeneSwitches is to discover the order of gene-expression and functio
     biotools:primaryContact "Matthew Gordon Sampson" .
 
 <https://bio.tools/GeneWalk> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0659,
@@ -31828,7 +25426,7 @@ The goal of GeneSwitches is to discover the order of gene-expression and functio
     sc:url "http://github.com/churchmanlab/genewalk" .
 
 <https://bio.tools/GeneYenta> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0625,
@@ -31851,7 +25449,7 @@ The goal of GeneSwitches is to discover the order of gene-expression and functio
     sc:url "https://geneyenta.com/accounts/home/" .
 
 <https://bio.tools/Gene_Sculpt_Suite> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite",
         "Web application" ;
     sc:applicationSubCategory edam:topic_3474,
@@ -31875,21 +25473,42 @@ The goal of GeneSwitches is to discover the order of gene-expression and functio
         "Jeffrey J. Essner",
         "Stephen C. Ekker" .
 
-<https://bio.tools/Gene_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3308,
-        edam:topic_3400,
-        edam:topic_3518 ;
-    sc:citation <https://doi.org/10.12688/F1000RESEARCH.18048.2>,
-        "pmcid:PMC6749933",
-        "pubmed:31559014" ;
-    sc:description "> LOW CONFIDENCE! | A curated transcriptome dataset collection to investigate inborn errors of immunity | There was an error sending your bug report. Please fill out the form and try again | Your Email: (so we can get back to you when the bug has been fixed)" ;
-    sc:featureList edam:operation_0337,
-        edam:operation_3258 ;
-    sc:name "Gene_autogenerated" ;
-    sc:url "http://pid.gxbsidra.org/dm3/geneBrowser/list" .
+<https://bio.tools/Gene_recommender> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1025" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Gene identifier" ] ;
+    bsc:output [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2080" ;
+            sc:encodingFormat "http://edamontology.org/format_3620" ;
+            sc:name "Database search results" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Bioinformatics portal" ;
+    sc:applicationSubCategory edam:topic_0602,
+        edam:topic_3070,
+        edam:topic_3344,
+        edam:topic_3474,
+        edam:topic_3948 ;
+    sc:description """Platform based on Artificial Intelligence Neural Network.
+Suggest the most probable gene (protein) based on deep learning on million of scientific papers.
+It also link the input+output to many free research tools to understand what the neural network suggested and why.""" ;
+    sc:featureList edam:operation_2436,
+        edam:operation_3279,
+        edam:operation_3625,
+        edam:operation_3767,
+        edam:operation_3929 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Freeware" ;
+    sc:name "GeneRecommender" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://doi.org/10.48550/arXiv.2208.01918> ;
+    sc:softwareVersion "2 stable" ;
+    sc:url "https://www.generecommender.com" .
 
 <https://bio.tools/Geneshot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -31913,7 +25532,7 @@ The goal of GeneSwitches is to discover the order of gene-expression and functio
         "Alexander Lachmann" .
 
 <https://bio.tools/Genesis-indel> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0199,
@@ -31930,7 +25549,7 @@ The goal of GeneSwitches is to discover the order of gene-expression and functio
     sc:url "https://github.com/mshabbirhasan/Genesis-indel" .
 
 <https://bio.tools/GenoGeographer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2885,
         edam:topic_3068,
@@ -31948,7 +25567,7 @@ A tool for genogeographic inference""" ;
     sc:url "http://genogeographer.org/" .
 
 <https://bio.tools/GenoSurf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0091,
@@ -31978,7 +25597,7 @@ We integrated about 40 million metadata of several major valuable data sources,
     biotools:primaryContact <https://orcid.org/0000-0003-4528-6586> .
 
 <https://bio.tools/Genoma> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0622 ;
@@ -31993,7 +25612,7 @@ We integrated about 40 million metadata of several major valuable data sources,
     sc:url "http://bioinfo.szn.it/genoma/" .
 
 <https://bio.tools/Genome3D> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -32022,7 +25641,7 @@ The tool genome3d-api aims to make communicating with the Genome3D API as conven
     sc:url "https://www.genome3d.eu" .
 
 <https://bio.tools/GenomeFlow> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0621,
@@ -32041,7 +25660,7 @@ The tool genome3d-api aims to make communicating with the Genome3D API as conven
     biotools:primaryContact "Jianlin Cheng" .
 
 <https://bio.tools/GenomeHubs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0621,
@@ -32071,7 +25690,7 @@ Sets up a GenomeHubs site hosting a mirror of the core database for the Glanvill
     sc:url "http://GenomeHubs.org" .
 
 <https://bio.tools/GenomeQC> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0622,
@@ -32090,7 +25709,7 @@ GenomeQC generates descriptive summaries with intuitive graphics for genome asse
     sc:url "https://genomeqc.maizegdb.org/" .
 
 <https://bio.tools/Genome_Constellation> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0194,
         edam:topic_0196,
@@ -32107,29 +25726,8 @@ About Press Copyright Contact us Creators Advertise Developers Terms Privacy Pol
     sc:name "Genome Constellation" ;
     sc:url "https://bitbucket.org/berkeleylab/jgi-genomeconstellation/" .
 
-<https://bio.tools/GenomicTools_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0625,
-        edam:topic_2885,
-        edam:topic_3168 ;
-    sc:citation <https://doi.org/10.1007/978-1-0716-0026-9_2>,
-        "pubmed:31849005" ;
-    sc:description """Performing QTL and eQTL Analyses with the R-Package GenomicTools.
-
-This Package is the continuation of the genomic analysis tools part of the GeneticTools package.
-
-Website accompanying the R-package 'GenomicTools'.
-
-Today the versions 0.2.8 for GenomicTools and 0.1.4 for GenomicTools.fileHandler have been released with a couple of bugfixes and a list of new features. In details we have.
-
-||| NAME EQUAL TO (PUB. DIFFERENT) bio.tools/genomictools""" ;
-    sc:featureList edam:operation_3196,
-        edam:operation_3232,
-        edam:operation_3435 ;
-    sc:name "GenomicTools_autogenerated" ;
-    sc:url "http://genomictools.danielfischer.name" .
-
 <https://bio.tools/Genomic_GPS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0622,
@@ -32146,7 +25744,7 @@ Today the versions 0.2.8 for GenomicTools and 0.1.4 for GenomicTools.fileHandler
     sc:url "https://github.com/hanlab-SNU/GenomicGPS" .
 
 <https://bio.tools/GenomicsDB> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3337,
         edam:topic_3396,
@@ -32172,7 +25770,7 @@ Using high-level APIs provided in C++, Java*, and Spark*, users can both write a
     sc:url "http://www.genomicsdb.org" .
 
 <https://bio.tools/Genomicus-Plants> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0621,
@@ -32199,7 +25797,7 @@ Using high-level APIs provided in C++, Java*, and Spark*, users can both write a
         <http://orcid.org/0000-0002-8209-173X> .
 
 <https://bio.tools/Genomicus-fungi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0194,
@@ -32225,7 +25823,7 @@ Using high-level APIs provided in C++, Java*, and Spark*, users can both write a
         <http://orcid.org/0000-0002-8209-173X> .
 
 <https://bio.tools/Genomicus-metazoa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0194,
@@ -32251,7 +25849,7 @@ Using high-level APIs provided in C++, Java*, and Spark*, users can both write a
         <http://orcid.org/0000-0002-8209-173X> .
 
 <https://bio.tools/Genomicus-protists> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0194,
@@ -32277,7 +25875,7 @@ Using high-level APIs provided in C++, Java*, and Spark*, users can both write a
         <http://orcid.org/0000-0002-8209-173X> .
 
 <https://bio.tools/Genomicus-tunicates> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0194,
@@ -32301,7 +25899,7 @@ Using high-level APIs provided in C++, Java*, and Spark*, users can both write a
         <http://orcid.org/0000-0002-8209-173X> .
 
 <https://bio.tools/Genotom> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:description "A multigenome platform with information on genomes and gene annotations from different tomato cultivars. This platform includes genomes from Heinz 1706, Lucariello and Corbarino (tomato landaraces) with related genome browsers and transcriptomic data. It gives free access to the recently sequenced Italian tomato varieties and offers tools for their comparative analysis. (Tranchida-Lombardo et al., ‎2017; https://doi.org/10.1093/dnares/dsx045)" ;
@@ -32314,7 +25912,7 @@ Using high-level APIs provided in C++, Java*, and Spark*, users can both write a
     sc:url "http://cab.unina.it/genotom/" .
 
 <https://bio.tools/Genus_biomolecules> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0097,
@@ -32335,7 +25933,7 @@ The Genus database collects information about topological structure and complexi
     sc:url "http://genus.fuw.edu.pl" .
 
 <https://bio.tools/GeoNode-Tools4MSP> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_0769,
@@ -32360,7 +25958,7 @@ The webtools (GeoNode integration) analysis workflow follows a four step approac
     sc:url "http://geonode.org/" .
 
 <https://bio.tools/Gephebase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0625,
@@ -32374,7 +25972,7 @@ The webtools (GeoNode integration) analysis workflow follows a four step approac
     sc:url "http://www.gephebase.org" .
 
 <https://bio.tools/GerOSS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3325,
         edam:topic_3411 ;
@@ -32393,7 +25991,7 @@ The webtools (GeoNode integration) analysis workflow follows a four step approac
         "Silvia Berlage" .
 
 <https://bio.tools/Gigwa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2885,
@@ -32421,7 +26019,7 @@ The webtools (GeoNode integration) analysis workflow follows a four step approac
     biotools:primaryContact <https://orcid.org/0000-0001-7429-2091> .
 
 <https://bio.tools/GiniClust3> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3170,
@@ -32438,30 +26036,8 @@ GiniClust is a clustering method specifically designed for rare cell type detect
     sc:name "GiniClust3" ;
     sc:url "https://github.com/rdong08/GiniClust3" .
 
-<https://bio.tools/Git> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0621,
-        edam:topic_0769,
-        edam:topic_2815 ;
-    sc:citation <https://doi.org/10.7287/PEERJ.PREPRINTS.3159V2> ;
-    sc:description """Excuse me, do you have a moment to talk about version control?.
-
-A presentation I gave at UXBri. Audio + Slides here: https://www.youtube.com/watch?v=eWxxfttcMts.
-
-Git is a member of Software Freedom Conservancy, which handles legal and financial needs for the project. Conservancy is currently raising funds to continue their mission. Consider becoming a supporter! ×.
-
-Git is a free and open source distributed version control system designed to handle everything from small to very large projects with speed and efficiency.
-
-Audio + Slides here: https://www.youtube.com/watch?v=eWxxfttcMts.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'unhappy', 'Excuse', 'unfolds', 'Markdown'""" ;
-    sc:featureList edam:operation_3096,
-        edam:operation_3435,
-        edam:operation_3802 ;
-    sc:name "Git" ;
-    sc:url "https://speakerdeck.com/alicebartlett/git-for-humans" .
-
 <https://bio.tools/GkmExplain> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3168,
@@ -32476,31 +26052,8 @@ Audio + Slides here: https://www.youtube.com/watch?v=eWxxfttcMts.
     sc:name "GkmExplain" ;
     sc:url "https://github.com/kundajelab/gkmexplain" .
 
-<https://bio.tools/GliomaDB> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0199,
-        edam:topic_0654,
-        edam:topic_0659,
-        edam:topic_2640,
-        edam:topic_3295 ;
-    sc:citation <https://doi.org/10.1016/J.GPB.2018.03.008>,
-        "pubmed:31811943" ;
-    sc:description """A Web Server for Integrating Glioma Omics Data and Interactive Analysis.
-
-A comprehensive database for both clinicians and scientists.
-
-GliomaDB hosts all the TCGA and MSK-IMPACT projects for somatic mutations of glioma patients. COSMIC, ClinVar and the 1000 Genome Project are integrated in annotation.
-
-No more difficulty in analyzing big data in glioma.
-
-||| COMMON LINK WITH (PUB. & NAME DIFFERENT) bio.tools/3CDB (BIG.AC.CN)""" ;
-    sc:featureList edam:operation_2495,
-        edam:operation_3083,
-        edam:operation_3207 ;
-    sc:name "GliomaDB" ;
-    sc:url "http://bigd.big.ac.cn/gliomaDB" .
-
 <https://bio.tools/Glutton> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0593,
@@ -32521,7 +26074,7 @@ No more difficulty in analyzing big data in glioma.
     biotools:primaryContact "Yi He" .
 
 <https://bio.tools/GlyMDB> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0154,
@@ -32537,7 +26090,7 @@ No more difficulty in analyzing big data in glioma.
     sc:url "http://www.glycanstructure.org/glymdb" .
 
 <https://bio.tools/GlycanAnalyzer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3068,
@@ -32562,7 +26115,7 @@ No more difficulty in analyzing big data in glioma.
         "Prof. Pauline M. Rudd" .
 
 <https://bio.tools/GlycanFormatConverter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0152,
@@ -32575,24 +26128,8 @@ No more difficulty in analyzing big data in glioma.
     sc:operatingSystem "Mac" ;
     sc:url "https://github.com/glycoinfo/GlycanFormatConverter" .
 
-<https://bio.tools/Glyco-CPLL> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0080,
-        edam:topic_0121,
-        edam:topic_0154,
-        edam:topic_3168,
-        edam:topic_3360 ;
-    sc:citation <https://doi.org/10.1021/ACS.JPROTEOME.9B00557>,
-        "pubmed:31860302" ;
-    sc:description """an integrated method for in-depth and comprehensive N-glycoproteome profiling of human plasma.
-
-N-glycoproteins are involved in various biological processes. Certain distinctive glycoforms on specific glycoproteins enhance the specificity and or sensitivity of cancer diagnosis. Therefore, the characterization of plasma N-glycoproteome is essential for new biomarker discovery. Absence of suitable analytical methods for in-depth and large-scale analyses of low-abundance plasma glycoproteins make it challenging to investigate the role of glycosylation. In this study, we developed an integrated method termed Glyco-CPLL, which integrates combinatorial peptide ligand libraries, high-pH reversed-phase pre-fractionation, hydrophilic interaction chromatography, trypsin and PNGase F digestion, shotgun proteomics, and various analysis software (MaxQuant and pGlyco2.0) for the low-abundance plasma glycoproteomic profiling.
-
-||| HOMEPAGE MISSING!""" ;
-    sc:name "Glyco-CPLL" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31860302" .
-
 <https://bio.tools/Glyco-DIA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_2815,
@@ -32607,7 +26144,7 @@ N-glycoproteins are involved in various biological processes. Certain distinctiv
     sc:url "https://github.com/CCGMS/Glyco-DIA" .
 
 <https://bio.tools/Glycosylator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0152,
@@ -32630,7 +26167,7 @@ Glycosylator is a Python framework for the identification, modeling and modifica
     sc:url "https://github.com/tlemmin/glycosylator" .
 
 <https://bio.tools/GmT> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3174,
         edam:topic_3382,
@@ -32653,7 +26190,7 @@ Glycosylator is a Python framework for the identification, modeling and modifica
     biotools:primaryContact "Saskia Hiltemann" .
 
 <https://bio.tools/Gmove> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3170 ;
@@ -32664,46 +26201,36 @@ Glycosylator is a Python framework for the identification, modeling and modifica
     sc:name "Gmove" ;
     sc:url "http://www.genoscope.cns.fr/gmove" .
 
-<https://bio.tools/Goals> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3050,
-        edam:topic_3377,
-        edam:topic_3855 ;
-    sc:citation <https://doi.org/10.20944/PREPRINTS201909.0209.V1> ;
-    sc:description "> VERY_LOW CONFIDENCE! | > CORRECT NAME OF TOOL COULD ALSO BE 'Sustainability', 'SDGs', 'SDG', 'QEOHS' | SDGs reporting by Quality, Environmental, and Occupational Health and Safety certified organizations | How Your Company Can Advance Each of the SDGs | Responsible business and investment – rooted in universal principles – will be essential to achieving transformational change through the SDGs. For companies, successful implementation will strengthen the enabling environment for doing business and building markets around the world | Below you will find links to important initiatives and resources of the UN Global Compact – and in some instances of other like-minded organizations – to guide companies and other stakeholders to action-oriented platforms and tools that support SDG implementation | It is important to note that in many instances a specific initiative or resource has relevancy to more than one SDG, reflecting the cross-cutting nature of today’s issues and challenges" ;
-    sc:featureList edam:operation_3891 ;
-    sc:name "Goals" ;
-    sc:url "https://www.unglobalcompact.org/sdgs/17-global-goals" .
-
 <https://bio.tools/GoldenMutagenesis> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3494" ;
-            sc:name "DNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3494" ],
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_1915" ;
+            sc:name "Sequence variations" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ],
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:encodingFormat "http://edamontology.org/format_2200" ;
+            sc:name "DNA sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ],
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_3000" ;
+            sc:name "Sequence trace" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3494" ;
-            sc:name "DNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3494" ] ;
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:encodingFormat "http://edamontology.org/format_2200" ;
+            sc:name "DNA sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2531" ;
-            sc:name "Protocol" ;
-            sc:sameAs "http://edamontology.org/data_2531" ],
+            sc:additionalType "http://edamontology.org/data_2531" ;
+            sc:encodingFormat "http://edamontology.org/format_3508" ;
+            sc:name "Protocol" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ],
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3603" ;
+            sc:name "Plot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1240" ;
-            sc:name "PCR primers" ;
-            sc:sameAs "http://edamontology.org/data_1240" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1240" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "PCR primers" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0091,
@@ -32731,17 +26258,8 @@ Glycosylator is a Python framework for the identification, modeling and modifica
     sc:softwareVersion "1.1.1" ;
     sc:url "https://msbi.ipb-halle.de/GoldenMutagenesisWeb" .
 
-<https://bio.tools/Google> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0128 ;
-    sc:citation <https://doi.org/10.1101/750695> ;
-    sc:description "> LOW CONFIDENCE! | Google matrix analysis of bi-functional SIGNOR network of protein-protein interactions | Linear response theory for SIGNOR PPI network | Left: matrix elements (color) of two components of reduced Google matrix of SIGNOR PPI network obtained for 40 most sensitive nodes on the pathway from protein EGFR P00533 (+) to protein JAK2 O60674 (-). Right: network of friends of most significant nodes from left panel | by K.M.Frahm and D.L.Shepelyansky | bioRxiv:https://doi.org/10.1101/750695" ;
-    sc:featureList edam:operation_0276,
-        edam:operation_2492 ;
-    sc:name "Google" ;
-    sc:url "http://www.quantware.ups-tlse.fr/QWLIB/google4signornet/" .
-
 <https://bio.tools/GpABC> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2269 ;
@@ -32753,7 +26271,7 @@ Glycosylator is a Python framework for the identification, modeling and modifica
     sc:url "https://github.com/tanhevg/GpABC.jl" .
 
 <https://bio.tools/Gplas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0769,
@@ -32780,48 +26298,23 @@ gplas: Binning plasmid-predicted contigs using short-read graphs""" ;
         "V0.7.0" ;
     sc:url "https://gitlab.com/sirarredondo/gplas.git" .
 
-<https://bio.tools/GpuSVMScreen> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_2830,
-        edam:topic_3047,
-        edam:topic_3343,
-        edam:topic_3474 ;
-    sc:citation <https://doi.org/10.1016/J.COMPBIOLCHEM.2019.107143>,
-        "pubmed:31743833" ;
-    sc:description """Ligand based virtual screening using SVM on GPU.
-
-Name Last modified Size Description.
-
-Benchmarking Dataset/ 16-Sep-2019 16:08 -.
-
-GpuSVMScreen.zip 10-Jan-2019 12:02 23M.
-
-train & classify/ 04-Dec-2018 15:52 -""" ;
-    sc:featureList edam:operation_0482 ;
-    sc:name "GpuSVMScreen" ;
-    sc:url "http://ccc.nitc.ac.in/project/GPUSVMSCREEN" .
-
 <https://bio.tools/GrapeMine> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ],
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:name "Sequence features" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2353" ;
-            sc:name "Ontology data" ;
-            sc:sameAs "http://edamontology.org/data_2353" ] ;
+            sc:additionalType "http://edamontology.org/data_2353" ;
+            sc:name "Ontology data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3753" ;
-            sc:name "Over-representation data" ;
-            sc:sameAs "http://edamontology.org/data_3753" ],
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:name "Sequence features" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3786" ;
-            sc:name "Query script" ;
-            sc:sameAs "http://edamontology.org/data_3786" ],
+            sc:additionalType "http://edamontology.org/data_3753" ;
+            sc:name "Over-representation data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3786" ;
+            sc:name "Query script" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application",
         "Web service" ;
@@ -32845,7 +26338,7 @@ train & classify/ 04-Dec-2018 15:52 -""" ;
     sc:url "http://urgi.versailles.inra.fr/GrapeMine" .
 
 <https://bio.tools/GraphAligner> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0199,
@@ -32864,7 +26357,7 @@ Seed-and-extend program for aligning long error-prone reads to genome graphs. Fo
     sc:url "https://anaconda.org/bioconda/graphaligner" .
 
 <https://bio.tools/GraphClust2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Bioinformatics portal" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0659,
@@ -32887,32 +26380,8 @@ GraphClust2 is a workflow for scalable clustering of RNAs based on sequence and
     sc:name "GraphClust2" ;
     sc:url "https://graphclust.usegalaxy.eu" .
 
-<https://bio.tools/Graph_Embedding_Biomedical_Networks> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0128,
-        edam:topic_0769,
-        edam:topic_3474 ;
-    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTZ718>,
-        "pubmed:31584634" ;
-    sc:description """Methods, Applications, and Evaluations.
-
-Graph Embedding Evaluation / Code and Datasets for "Graph Embedding on Biomedical Networks: Methods, Applications, and Evaluations".
-
-BioNEV (Biomedical Network Embedding Evaluation).
-
-This repository contains source code and datasets for paper "Graph Embedding on Biomedical Networks: Methods, Applications, and Evaluations" (accepted by Bioinformatics). This work aims to systematically evaluate recent advanced graph embedding techniques on biomedical tasks. We compile 5 benchmark datasets for 4 biomedical prediction tasks (see paper for details) and use them to evaluate 11 representative graph embedding methods selected from different categories:.
-
-5 matrix factorization-based: Laplacian Eigenmap, SVD, Graph Factorization, HOPE, GraRep.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'BioNEV'""" ;
-    sc:featureList edam:operation_0303,
-        edam:operation_2492,
-        edam:operation_3439 ;
-    sc:license "MIT" ;
-    sc:name "Graph Embedding Biomedical Networks" ;
-    sc:url "https://github.com/xiangyue9607/BioNEV" .
-
 <https://bio.tools/Graph_Peak_Caller> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0749,
@@ -32933,7 +26402,7 @@ This repository contains source code and datasets for paper "Graph Embedding on
     biotools:primaryContact "Biomedical Informatics Research Group (BMI)" .
 
 <https://bio.tools/Graphmap2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3320,
@@ -32948,7 +26417,7 @@ This repository contains source code and datasets for paper "Graph Embedding on
     sc:url "https://github.com/lbcb-sci/graphmap2" .
 
 <https://bio.tools/Graphtyper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2885,
@@ -32969,7 +26438,7 @@ This repository contains source code and datasets for paper "Graph Embedding on
     biotools:primaryContact "Hannes Pétur Eggertsson" .
 
 <https://bio.tools/GreatSPN> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3318,
@@ -32986,7 +26455,7 @@ BACKGROUND:Multiple Sclerosis (MS) is an immune-mediated inflammatory disease of
     sc:url "https://github.com/greatspn" .
 
 <https://bio.tools/Green_listed> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -33005,7 +26474,7 @@ BACKGROUND:Multiple Sclerosis (MS) is an immune-mediated inflammatory disease of
     biotools:primaryContact "Fredrik Wermeling" .
 
 <https://bio.tools/GripDL> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0602,
@@ -33020,38 +26489,8 @@ BACKGROUND:Multiple Sclerosis (MS) is an immune-mediated inflammatory disease of
     sc:name "GripDL" ;
     sc:url "https://github.com/2010511951/GripDL" .
 
-<https://bio.tools/GroScore> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0128,
-        edam:topic_0154,
-        edam:topic_0176,
-        edam:topic_2275 ;
-    sc:citation <https://doi.org/10.1021/ACS.JCIM.9B00687>,
-        "pubmed:31790223" ;
-    sc:description """Accurate Scoring of Protein-Protein Binding Poses Using Explicit-Solvent Free-Energy Calculations.
-
-Protein-protein docking algorithms promise a potential relief for the mismatch between the number of experimentally determined complex structures and the number of relevant protein interactions in an organism. To distinguish correctly from wrongly generated poses, it is necessary to score complexes according to their structural similarity to the real complex, which is usually done by computing interaction energies of some sort. Here, we explore the potential of free-energy calculations with statistical-mechanical foundation in the context of molecular dynamics (MD) simulations with explicit solvent to score a large number of complex poses. We introduce an adaptive sampling scheme which ensures that most sampling time is spent on the most promising poses.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'statistical-mechanical', 'Score_set'""" ;
-    sc:featureList edam:operation_2476,
-        edam:operation_3802,
-        edam:operation_3899 ;
-    sc:name "GroScore" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31790223" .
-
-<https://bio.tools/Groundtruth> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3300 ;
-    sc:citation <https://doi.org/10.3389/FPHYS.2019.00850>,
-        "pmcid:PMC6710362",
-        "pubmed:31481893" ;
-    sc:description "> LOW CONFIDENCE! | > HOMEPAGE MISSING! | A Matlab GUI for Artifact and Feature Identification in Physiological Signals | Groundtruth is a Matlab Graphical User Interface (GUI) developed for the identification of key features and artifacts within physiological signals. The ultimate aim of this GUI is to provide a simple means of assessing the performance of new sensors. Secondary, to this is providing a means of providing marked data, enabling assessment of automated artifact rejection and feature identification algorithms. With the emergence of new wearable sensor technologies, there is an unmet need for convenient assessment of device performance, and a faster means of assessing new algorithms. The proposed GUI allows interactive marking of artifact regions as well as simultaneous interactive identification of key features, e.g., respiration peaks in respiration signals, R-peaks in Electrocardiography signals, etc" ;
-    sc:featureList edam:operation_0337 ;
-    sc:name "Groundtruth" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31481893" .
-
 <https://bio.tools/GrowthEstimate> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3390,
@@ -33064,7 +26503,7 @@ Protein-protein docking algorithms promise a potential relief for the mismatch b
     sc:url "https://github.com/RungruangsakTorrissenManoonpong/GrowthEstimate" .
 
 <https://bio.tools/GsVec> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0203,
@@ -33083,7 +26522,7 @@ GsVec (Gene signature Vector) is an analysis method that supports the biological
     sc:url "https://github.com/yuumio/GsVec" .
 
 <https://bio.tools/Gypsum-DL> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2275,
         edam:topic_3343,
@@ -33103,7 +26542,7 @@ GsVec (Gene signature Vector) is an analysis method that supports the biological
     biotools:primaryContact <https://orcid.org/0000-0002-5808-4097> .
 
 <https://bio.tools/H3ABioNet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0769,
@@ -33117,7 +26556,7 @@ GsVec (Gene signature Vector) is an analysis method that supports the biological
     sc:url "http://github.io/H3ABionet-SOPs/index.html" .
 
 <https://bio.tools/HAF-pipe> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2885,
@@ -33141,7 +26580,7 @@ To simulate recombination and pooled sequencing data from a panel of sequenced f
     sc:url "https://github.com/petrov-lab/HAFpipe-line" .
 
 <https://bio.tools/HAMR> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application",
         "Web service" ;
@@ -33165,28 +26604,8 @@ To simulate recombination and pooled sequencing data from a panel of sequenced f
     sc:softwareVersion "1.2" ;
     sc:url "http://tesla.pcbi.upenn.edu/hamr/" .
 
-<https://bio.tools/HARDEN> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0602,
-        edam:topic_0634,
-        edam:topic_0654,
-        edam:topic_3295,
-        edam:topic_3674 ;
-    sc:citation <https://doi.org/10.1093/NAR/GKZ979>,
-        "pubmed:31680172" ;
-    sc:description """Targeted DNA methylation of neurodegenerative disease genes via homology directed repair.
-
-DNA methyltransferases (DNMTs) are thought to be involved in the cellular response to DNA damage, thus linking DNA repair mechanisms with DNA methylation. In this study we present Homology Assisted Repair Dependent Epigenetic eNgineering (HARDEN), a novel method of targeted DNA methylation that utilizes endogenous DNA double strand break repair pathways. This method allows for stable targeted DNA methylation through the process of homology directed repair (HDR) via an in vitro methylated exogenous repair template. We demonstrate that HARDEN can be applied to the neurodegenerative disease genes C9orf72 and APP, and methylation can be induced via HDR with both single and double stranded methylated repair templates.
-
-||| HOMEPAGE MISSING!""" ;
-    sc:featureList edam:operation_0308,
-        edam:operation_3186,
-        edam:operation_3206,
-        edam:operation_3207 ;
-    sc:name "HARDEN" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31680172" .
-
 <https://bio.tools/HCCPred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3308,
@@ -33199,17 +26618,8 @@ DNA methyltransferases (DNMTs) are thought to be involved in the cellular respon
     sc:name "HCCPred" ;
     sc:url "http://webs.iiitd.edu.in/raghava/hccpred/" .
 
-<https://bio.tools/HCP> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0593,
-        edam:topic_3384,
-        edam:topic_3444 ;
-    sc:citation <https://doi.org/10.1101/755140> ;
-    sc:description "> VERY_LOW CONFIDENCE! | > HOMEPAGE BROKEN! | > CORRECT NAME OF TOOL COULD ALSO BE 'Statistical significance DTI group analyses', 'OLLS', 'IWLLS', 'dMRI' | How the choice of the estimator can inflate effect sizes | Abstract Diffusion magnetic resonance imaging (dMRI) is one of the most prevalent methods to investigate the micro- and macrostructure of the human brain in vivo. Prior to any group analysis, dMRI data are generally processed to alleviate adverse effects of known artefacts such as signal drift, data noise and outliers, subject motion, and geometric distortions. These dMRI data processing steps are often combined in automated pipelines, such as the one of the Human Connectome Project (HCP). While improving the performance of processing tools has clearly shown its benefits at each individual step along the pipeline, it remains unclear whether and to what degree choices for specific user-defined parameter settings can affect the final outcome of group analyses" ;
-    sc:name "HCP" ;
-    sc:url "https://wiki.humanconnectome.org/display/PublicData/HCP+Data+Release+Updates%3A+Kno516" .
-
 <https://bio.tools/HD-BET> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3384,
         edam:topic_3444,
@@ -33221,7 +26631,7 @@ DNA methyltransferases (DNMTs) are thought to be involved in the cellular respon
     sc:url "https://github.com/NeuroAI-HD" .
 
 <https://bio.tools/HD-GMCM> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3577 ;
     sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTZ599>,
@@ -33232,7 +26642,7 @@ DNA methyltransferases (DNMTs) are thought to be involved in the cellular respon
     sc:url "https://bitbucket.org/cdal/hdgmcm/" .
 
 <https://bio.tools/HDCytoData> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:citation <https://doi.org/10.12688/F1000RESEARCH.20210.1> ;
     sc:description "Collection of high-dimensional cytometry benchmark datasets in Bioconductor object formats | Data package containing high-dimensional cytometry data sets in SummarizedExperiment and flowSet formats | R code to reproduce example in Figure 1 in our HDCytoData paper | The HDCytoData package is an extensible resource containing a set of publicly available high-dimensional flow cytometry and mass cytometry (CyTOF) benchmark datasets, which have been formatted into SummarizedExperiment and flowSet Bioconductor object formats. The data objects are hosted on Bioconductor's ExperimentHub platform" ;
@@ -33244,39 +26654,8 @@ DNA methyltransferases (DNMTs) are thought to be involved in the cellular respon
     sc:softwareHelp <http://github.com/lmweber/HDCytoData-example> ;
     sc:url "http://bioconductor.org/packages/HDCytoData" .
 
-<https://bio.tools/HEARTSMAP> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3403,
-        edam:topic_3418,
-        edam:topic_3419 ;
-    sc:citation <https://doi.org/10.1093/PCH/PXZ038>,
-        "pmcid:PMC6735715",
-        "pubmed:31528104" ;
-    sc:description "> LOW CONFIDENCE! | > CORRECT NAME OF TOOL COULD ALSO BE 'provincial dissemination HEARTSMAP', 'HEARTSMAP emergency paediatric psychosocial', 'HEARTSMAP emergency paediatric psychosocial assessments' | emergency department psychosocial assessment and disposition decision tool for children and youth | OPEN HEARTSMAP – An Emergency Psychosocial Assessment + Management tool for children + youth | An Emergency Psychosocial Assessment + Management tool for children + youth | Registration and use of Open HEARTSMAP is intended solely for clinicians (physicians, nurses, social workers, other mental health workers) to aid their psychosocial assessment. Other use is non-permissible" ;
-    sc:featureList edam:operation_3891 ;
-    sc:name "HEARTSMAP" ;
-    sc:url "http://www.openheartsmap.ca" .
-
-<https://bio.tools/HEAT-SHIELD> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3300,
-        edam:topic_3390,
-        edam:topic_3855 ;
-    sc:citation <https://doi.org/10.3390/IJERPH16162890>,
-        "pmcid:PMC6718993",
-        "pubmed:31412559" ;
-    sc:description "> MEDIUM CONFIDENCE! | > CORRECT NAME OF TOOL COULD ALSO BE 'HEAT-SHIELD Platform' | An Occupational Heat-Health Warning System for Europe | Use the advanced Heat-Shield alert system and get scenario specific and personalized forecasts, advice on hydration, how to minimize heat load, solutions for specific industries.. | Heat stress depends on the weather as well as your individual physiology and working conditions" ;
-    sc:name "HEAT-SHIELD" ;
-    sc:url "https://heatshield.zonalab.it/" .
-
-<https://bio.tools/HEDSA> a sc:SoftwareApplication ;
-    sc:citation <https://doi.org/10.4102/AJOD.V8I0.558>,
-        "pmcid:PMC6739537",
-        "pubmed:31534917" ;
-    sc:description "> LOW CONFIDENCE! | > HOMEPAGE BROKEN! | > COMMON LINK WITH (PUB. & NAME DIFFERENT) bio.tools/krisp (ORG.ZA) | > CORRECT NAME OF TOOL COULD ALSO BE 'Assistive technology enables inclusion higher education', 'PSET', 'PSET sector' | The role of Higher and Further Education Disability Services Association | Background:Using assistive technology is one way to foster inclusion of students in the post-school education and training (PSET) sector. Objectives:Higher and Further Education Disability Services Association (HEDSA) enables the sharing of new knowledge about assistive technologies through its symposia, and making information available on its website. Additionally, it facilitates dialogue and collaboration amongst institutions in the PSET network using a listserv and newsletters, given that PSET institutions are spread countrywide" ;
-    sc:name "HEDSA" ;
-    sc:url "http://www.hedsa.org.za" .
-
 <https://bio.tools/HEGIAP> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -33290,26 +26669,8 @@ DNA methyltransferases (DNMTs) are thought to be involved in the cellular respon
     sc:name "HEGIAP" ;
     sc:url "http://sysomics.com/HEGIAP/" .
 
-<https://bio.tools/HEIA> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3063,
-        edam:topic_3068,
-        edam:topic_3305,
-        edam:topic_3420 ;
-    sc:citation <https://doi.org/10.17269/S41997-019-00269-2>,
-        "pubmed:31755052" ;
-    sc:description """Implementation of the Health Equity Impact Assessment (HEIA) tool in a local public health setting.
-
-SETTING:The Simcoe Muskoka District Health Unit (SMDHU) is a local public health agency in Ontario, serving the County of Simcoe and District of Muskoka's population of over 540,000 people in a mixed urban-rural environment. SMDHU has had a strategic focus on the determinants of health since 2007. INTERVENTION:The use of the Health Equity Impact Assessment (HEIA) tool was encouraged throughout SMDHU. An online survey was conducted to assess the implementation of mitigation strategies identified through the HEIAs; in particular, the facilitators and barriers challenges, and the impacts at both the program level and the level of priority populations, themselves, were assessed. OUTCOMES:Agency programs reported 40 HEIAs conducted between 2013 and 2017.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'mitigation', 'mitigation strategies'""" ;
-    sc:featureList edam:operation_3799 ;
-    sc:name "HEIA" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31755052" .
-
 <https://bio.tools/HERMES_medical_imaging> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0749,
@@ -33326,7 +26687,7 @@ SETTING:The Simcoe Muskoka District Health Unit (SMDHU) is a local public health
     sc:url "https://hermes.grnet.gr/" .
 
 <https://bio.tools/HHypermap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0218,
@@ -33348,64 +26709,8 @@ Check Hypermap Registry documentation.""" ;
     sc:name "HHypermap" ;
     sc:url "https://github.com/cga-harvard/HHypermap" .
 
-<https://bio.tools/HIC> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0769,
-        edam:topic_3063,
-        edam:topic_3303,
-        edam:topic_3360,
-        edam:topic_3379 ;
-    sc:citation <https://doi.org/10.1101/2019.12.16.19015065> ;
-    sc:description """Development of a Pipeline to Collate Electronic Clinical Data for Viral Hepatitis Research.
-
-Health Informatics Collaborative – National Institute for Health Research.
-
-Health Informatics Collaborative.
-
-National Institute for Health Research.
-
-The NIHR Health Informatics Collaborative (HIC) brings together all NHS trusts with NIHR Biomedical Research Centres (BRCs) and their partner trust to make NHS clinical data more readily available to NHS trusts, researchers, industry and the wider NHS community. The collaborative comprises NHS trusts that are interested in collaborating with other NHS trusts on translational research projects.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'National Institute Health Research Health Informatics Collaborative NIHR HIC', 'hepatitis', 'NIHR', 'viral'""" ;
-    sc:featureList edam:operation_3431 ;
-    sc:name "HIC" ;
-    sc:url "https://hic.nihr.ac.uk/" .
-
-<https://bio.tools/HILJ> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3063,
-        edam:topic_3068,
-        edam:topic_3305 ;
-    sc:citation <https://doi.org/10.1111/HIR.12288>,
-        "pubmed:31829504" ;
-    sc:description """An open invitation to join HILJ [Journal] Club.
-
-Access to Health Information and Libraries Journal (HILJ).
-
-HILJ CPD reading Volume 35 No 3 – Developing a generic tool to routinely measure the impact of health libraries.
-
-HILJ CPD Reading vol 35 no 3 – Localising and tailoring research evidence helps public health decision making. – Health librarian and info skills trainer.
-
-HILJ Club – Read articles – talk about them.
-
-As an HLG member you can access the Journal here.
-
-Welcome to the second experimental online reading group aimed at encouraging discussion of interesting articles in HILJ. The first attempt took place around Volume 35 No 2 on CILIP Social Link (link may require CILIP login and may not take you to the right place). Unfortunately we found SocialLink did not really offer quite what was….
-
-Thanks to an idea from Alan Fricker, we're reading articles from HILJ for our CPD.
-
-Health librarian and info skills trainer.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'HILJ Club'""" ;
-    sc:featureList edam:operation_0305,
-        edam:operation_2422,
-        edam:operation_3096,
-        edam:operation_3283,
-        edam:operation_3436 ;
-    sc:name "HILJ" ;
-    sc:softwareHelp <https://wol-prod-cdn.literatumonline.com/pb-assets/assets/14711842/HILJAuthorGuidelinesv5_21March19-1553181996507.pdf> ;
-    sc:url "https://archive.cilip.org.uk/health-libraries-group/health-information-libraries-journal/access-health-information-libraries-journal-hilj" .
-
 <https://bio.tools/HIO> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0625,
@@ -33424,7 +26729,7 @@ The Hearing Impairment Ontology (HIO) is a collaboratively developed resource by
     sc:url "https://bioportal.bioontology.org/ontologies/HIO" .
 
 <https://bio.tools/HIRAC> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0654,
@@ -33438,22 +26743,8 @@ The included Python scripts (mat2net.py, and predictCTpos.py) contain an impleme
     sc:name "HIRAC" ;
     sc:url "https://github.com/priyojitDas/HIRAC" .
 
-<https://bio.tools/HISAT2_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0625,
-        edam:topic_2885,
-        edam:topic_3676 ;
-    sc:citation <https://doi.org/10.1038/S41587-019-0201-4>,
-        "pubmed:31375807" ;
-    sc:description "> LOW CONFIDENCE! | > NAME EQUAL TO (PUB. DIFFERENT) bio.tools/hisat2 | Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype | Graph-based alignment (Hierarchical Graph FM index) | HISAT2 is a fast and sensitive alignment program for mapping next-generation sequencing reads (whole-genome, transcriptome, and exome sequencing data) to a population of human genomes (as well as to a single reference genome)" ;
-    sc:featureList edam:operation_3182,
-        edam:operation_3196,
-        edam:operation_3211 ;
-    sc:license "GPL-3.0" ;
-    sc:name "HISAT2_autogenerated" ;
-    sc:url "https://github.com/DaehwanKimLab/hisat2" .
-
 <https://bio.tools/HIV-1> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0781,
@@ -33472,20 +26763,8 @@ The HIV databases contain comprehensive data on HIV genetic sequences and immuno
     sc:name "HIV-1" ;
     sc:url "http://www.hiv.lanl.gov" .
 
-<https://bio.tools/HIV-1C> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0130,
-        edam:topic_0176,
-        edam:topic_0199 ;
-    sc:citation <https://doi.org/10.1101/781120> ;
-    sc:description "> MEDIUM CONFIDENCE! | > CORRECT NAME OF TOOL COULD ALSO BE 'HIV-1C Integrase-Dolutegravir', 'HIV-1', 'Dolutegravir', 'G140S' | Molecular dynamic simulations to investigate the structural impact of known drug resistance mutations on HIV-1C Integrase-Dolutegravir binding | We encountered a problem with your input. Please consider these tips: | File format: for example, a form field that requires a csv file will not accept a DNA sequence file | Characters and symbols: limit sequence names and all text to letters, numbers, underscores, and normal punctuation. Accented characters, symbols, unusual text encoding, or unusual line break characters may produce this message" ;
-    sc:featureList edam:operation_0331,
-        edam:operation_2476,
-        edam:operation_3891 ;
-    sc:name "HIV-1C" ;
-    sc:url "https://www.hiv.lanl.gov/components/sequence/" .
-
 <https://bio.tools/HIV-ASSIST> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:citation <https://doi.org/10.1097/QAI.0000000000002118>,
         "pubmed:31513553" ;
@@ -33494,7 +26773,7 @@ The HIV databases contain comprehensive data on HIV genetic sequences and immuno
     sc:url "https://www.hivassist.com" .
 
 <https://bio.tools/HIV-DRLink> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0199,
@@ -33519,7 +26798,7 @@ The HIV databases contain comprehensive data on HIV genetic sequences and immuno
     sc:url "https://hivdb.stanford.edu/" .
 
 <https://bio.tools/HIV-related> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2269,
@@ -33533,7 +26812,7 @@ The HIV databases contain comprehensive data on HIV genetic sequences and immuno
     sc:url "http://hiv.ocds.co" .
 
 <https://bio.tools/HIVCoR> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -33554,7 +26833,7 @@ The HIV databases contain comprehensive data on HIV genetic sequences and immuno
     biotools:primaryContact "Watshara Shoombuatong" .
 
 <https://bio.tools/HIrisPlex-S> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2885 ;
@@ -33567,7 +26846,7 @@ The HIV databases contain comprehensive data on HIV genetic sequences and immuno
     sc:url "https://hirisplex.erasmusmc.nl" .
 
 <https://bio.tools/HKPocket> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3336,
@@ -33585,7 +26864,7 @@ BACKGROUND:The kinase pocket structural information is important for drug discov
     sc:url "http://zhaoserver.com.cn/HKPocket/HKPocket.html" .
 
 <https://bio.tools/HLA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3308,
@@ -33600,7 +26879,7 @@ BACKGROUND:The kinase pocket structural information is important for drug discov
     sc:url "https://github.com/ExpressionAnalysis/HLAProfiler" .
 
 <https://bio.tools/HLA_Ligand_Atlas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2830,
@@ -33613,7 +26892,7 @@ BACKGROUND:The kinase pocket structural information is important for drug discov
     sc:url "http://www.hla-ligand-atlas.org" .
 
 <https://bio.tools/HLMethy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0203,
@@ -33629,7 +26908,7 @@ HLMethy: Machine learning-based model to identify the hidden labels of candidate
     sc:url "https://github.com/liuze-nwafu/HLMethy" .
 
 <https://bio.tools/HMMER2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0160 ;
@@ -33646,30 +26925,8 @@ HLMethy: Machine learning-based model to identify the hidden labels of candidate
     sc:softwareVersion "2.1.1 - 2.4i" ;
     sc:url "http://hmmer.org/" .
 
-<https://bio.tools/HMNPPID> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0108,
-        edam:topic_0128,
-        edam:topic_0218,
-        edam:topic_2640,
-        edam:topic_3557 ;
-    sc:citation <https://doi.org/10.1186/S40246-019-0223-5>,
-        "pmcid:PMC6805303",
-        "pubmed:31639057" ;
-    sc:description """HMNPPID-human malignant neoplasm protein-protein interaction database.
-
-BACKGROUND:Protein-protein interaction (PPI) information extraction from biomedical literature helps unveil the molecular mechanisms of biological processes. Especially, the PPIs associated with human malignant neoplasms can unveil the biology behind these neoplasms. However, such PPI database is not currently available. RESULTS:In this work, a database of protein-protein interactions associated with 171 kinds of human malignant neoplasms named HMNPPID is constructed. In addition, a visualization program, named VisualPPI, is provided to facilitate the analysis of the PPI network for a specific neoplasm. CONCLUSIONS:HMNPPID can hopefully become an important resource for the research on PPIs of human malignant neoplasms since it provides readily available data for healthcare professionals.
-
-||| HOMEPAGE BROKEN!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'CONCLUSIONS:HMNPPID', 'VisualPPI'""" ;
-    sc:featureList edam:operation_0276,
-        edam:operation_2492,
-        edam:operation_3083 ;
-    sc:name "HMNPPID" ;
-    sc:url "http://202.118.75.18:8082/HMNPPID.asp" .
-
 <https://bio.tools/HMP2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_0804,
@@ -33693,7 +26950,7 @@ BACKGROUND:Protein-protein interaction (PPI) information extraction from biomedi
         "Ramnik J. Xavier" .
 
 <https://bio.tools/HNADOCK> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0099,
@@ -33718,7 +26975,7 @@ BACKGROUND:Protein-protein interaction (PPI) information extraction from biomedi
         "Yi Xiao" .
 
 <https://bio.tools/HNCDB> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0209,
@@ -33743,7 +27000,7 @@ BACKGROUND:Protein-protein interaction (PPI) information extraction from biomedi
         "Zhixiang Zuo" .
 
 <https://bio.tools/HNN> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3304,
@@ -33755,7 +27012,7 @@ BACKGROUND:Protein-protein interaction (PPI) information extraction from biomedi
     sc:url "https://hnn.brown.edu" .
 
 <https://bio.tools/HOME> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3295,
@@ -33775,7 +27032,7 @@ BACKGROUND:Protein-protein interaction (PPI) information extraction from biomedi
     biotools:primaryContact <https://orcid.org/0000-0001-6637-7239> .
 
 <https://bio.tools/HOPS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0634,
@@ -33800,28 +27057,8 @@ The HOPS package allows to compute the horizontal pleiotropy score (HOrizontal P
     sc:name "HOPS" ;
     sc:url "https://github.com/rondolab/HOPS" .
 
-<https://bio.tools/HOPS_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0654,
-        edam:topic_0769,
-        edam:topic_3168,
-        edam:topic_3174,
-        edam:topic_3324 ;
-    sc:citation <https://doi.org/10.1186/S13059-019-1903-0>,
-        "pmcid:PMC6913047",
-        "pubmed:31842945" ;
-    sc:description """automated detection and authentication of pathogen DNA in archaeological remains.
-
-HOPS is a java pipeline which focuses on screening MALT data (see Table of Contents) for the presence of a user-specified list of target species. The pipeline essentially exists to make it easier to use MALT and MaltExtract in unison. To use HOPS you will need a config file, which specifies some key parameters for MALT and MaltExtract. You can have multiple config files to quickly redo a previous analysis or archive them to remember parameters you used in an analysis. HOPS will in every case create a log that tells you which command was sent to Slurm, in case you encounter problems, that log file is a very good place to start looking for the problem""" ;
-    sc:featureList edam:operation_2422,
-        edam:operation_3198,
-        edam:operation_3431,
-        edam:operation_3460 ;
-    sc:license "GPL-3.0" ;
-    sc:name "HOPS_autogenerated" ;
-    sc:url "https://github.com/rhuebler/HOPS" .
-
 <https://bio.tools/HOT> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3169,
@@ -33844,7 +27081,7 @@ HOPS is a java pipeline which focuses on screening MALT data (see Table of Conte
         "Verdan Franske" .
 
 <https://bio.tools/HPAanalyze> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3308,
@@ -33859,31 +27096,8 @@ HOPS is a java pipeline which focuses on screening MALT data (see Table of Conte
     sc:name "HPAanalyze" ;
     sc:url "https://github.com/adussaq/jsHPAanalyze" .
 
-<https://bio.tools/HPAanalyze_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0080,
-        edam:topic_0099,
-        edam:topic_0121,
-        edam:topic_0769,
-        edam:topic_3308 ;
-    sc:citation <https://doi.org/10.1093/NEUONC/NOY148.259>,
-        "pmcid:PMC6217038" ;
-    sc:description """COMP-04. R TOOLS FOR EXPLORATORY ANALYSIS OF PUBLICLY AVAILABLE DATA.
-
-AbstractBACKGROUNDThe Human Protein Atlas (HPA) is a comprehensive resource for exploration of human proteome which contains a vast amount of proteomics and transcriptomics data generated from antibody-based tissue micro-array profiling and RNA deep-sequencing. Data from the HPA are freely available via proteinatlas.org, allowing scientists to access and incorporate the data into their research. Previously, the R package hpar has been created for fast and easy programmatic access of HPA data. Here, we introduce HPAanalyze, an R package aims to simplify exploratory data analysis from those data, as well as provide other complementary functionality to hpar.
-
-||| HOMEPAGE MISSING!.
-
-||| NAME EQUAL TO (PUB. DIFFERENT) bio.tools/HPAanalyze.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'HPA', 'HPAanalyze intergrates', 'Protein Atlas', 'proteinatlas.org allowing scientists'""" ;
-    sc:featureList edam:operation_0337,
-        edam:operation_2422,
-        edam:operation_2495 ;
-    sc:name "HPAanalyze_autogenerated" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6217038/" .
-
 <https://bio.tools/HPCCS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3047,
@@ -33902,22 +27116,8 @@ High Performance Collision Cross Section Calculation – HPCCS""" ;
     sc:name "HPCCS" ;
     sc:url "https://github.com/cepid-cces/hpccs" .
 
-<https://bio.tools/HPO-Shuffle> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3334,
-        edam:topic_3517,
-        edam:topic_3518 ;
-    sc:citation <https://doi.org/10.1042/BSR20191247>,
-        "pmcid:PMC6732366",
-        "pubmed:31427480" ;
-    sc:description "> MEDIUM CONFIDENCE! | > HOMEPAGE MISSING! | an associated gene prioritization strategy and its application in drug repurposing for the treatment of canine epilepsy | Epilepsy is a common neurological disorder that affects mammalian species including human beings and dogs. In order to discover novel drugs for the treatment of canine epilepsy, multiomics data were analyzed to identify epilepsy associated genes. In this research, the original ranking of associated genes was obtained by two high-throughput bioinformatics experiments: Genome Wide Association Study (GWAS) and microarray analysis. The association ranking of genes was enhanced by a re-ranking system, HPO-Shuffle, which integrated information from GWAS, microarray analysis and Human Phenotype Ontology database for further downstream analysis. After applying HPO-Shuffle, the association ranking of epilepsy genes were improved" ;
-    sc:featureList edam:operation_3463,
-        edam:operation_3501,
-        edam:operation_3766 ;
-    sc:name "HPO-Shuffle" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31427480" .
-
 <https://bio.tools/HPO2GO> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0128,
@@ -33941,21 +27141,8 @@ In this study, a novel approach is proposed for the identification of relationsh
     sc:name "HPO2GO" ;
     sc:url "https://github.com/cansyl/HPO2GO" .
 
-<https://bio.tools/HPP> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0121,
-        edam:topic_2815,
-        edam:topic_3520 ;
-    sc:citation <https://doi.org/10.1101/733576>,
-        "pmcid:PMC5096969",
-        "pubmed:27490519" ;
-    sc:description "> VERY_LOW CONFIDENCE! | > HOMEPAGE BROKEN! | Human Proteome Project Mass Spectrometry Data Interpretation Guidelines 3.0 | The Human Proteome Organization's (HUPO) Human Proteome Project (HPP) developed Mass Spectrometry (MS) Data Interpretation Guidelines that have been applied since 2016. These guidelines have helped ensure that the emerging draft of the complete human proteome is highly accurate and with low numbers of false-positive protein identifications. Here, we describe an update to these guidelines based on consensus-reaching discussions with the wider HPP community over the past year. The revised 3.0 guidelines address several major and minor identified gaps. We have added guidelines for emerging data independent acquisition (DIA) MS workflows and for use of the new Universal Spectrum Identifier (USI) system being developed by the HUPO Proteomics Standards Initiative (PSI)" ;
-    sc:featureList edam:operation_3431,
-        edam:operation_3636 ;
-    sc:name "HPP" ;
-    sc:url "https://www.hupo.org/HPP-Data-InterpretationGuidelines" .
-
 <https://bio.tools/HPer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0130,
@@ -33974,22 +27161,31 @@ Helix Positioner a program for locating helix binding sites at protien-protein i
     sc:name "Helix Positioner" ;
     sc:url "https://github.com/proteincraft/HPer" .
 
-<https://bio.tools/HREExplorer> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0749,
-        edam:topic_3500,
-        edam:topic_3512 ;
-    sc:citation <https://doi.org/10.3389/FGENE.2019.00659>,
-        "pmcid:PMC6660265",
-        "pubmed:31379925" ;
-    sc:description "> MEDIUM CONFIDENCE! | > CORRECT NAME OF TOOL COULD ALSO BE 'HRE', 'carpio', 'HBS', 'hypoxia' | Genome-Wide Comparative Analysis of HIF Binding Sites in Cyprinus Carpio for In Silico Identification of Functional Hypoxia Response Elements | A genome wide analysis of Hypoxia Response Elements (HRE) in the gene promoter of Cyprinus carpio | Chromosome 1234567891011121314151617181920212223242526272829303132333435363738394041424344454647484950 | Motif All HREHRE with HASAll E-boxE-box with HAS" ;
-    sc:featureList edam:operation_0441,
-        edam:operation_2495,
-        edam:operation_3223 ;
-    sc:name "HREExplorer" ;
-    sc:url "http://mail.nbfgr.res.in/HREExplorer" .
+<https://bio.tools/HPfA> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Bioinformatics portal" ;
+    sc:applicationSubCategory edam:topic_0080,
+        edam:topic_0089,
+        edam:topic_0121,
+        edam:topic_0601,
+        edam:topic_3320 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAB1086>,
+        "pmcid:PMC8728143",
+        "pubmed:34986596" ;
+    sc:description "The Human Proteoform Atlas (HPfA) is a web-based repository of experimentally verified human proteoforms and is a direct descendant of the Consortium of Top-Down Proteomics' (CTDP) Proteoform Atlas" ;
+    sc:featureList edam:operation_0224,
+        edam:operation_0417,
+        edam:operation_3755 ;
+    sc:isAccessibleForFree true ;
+    sc:name "Human Proteoform Atlas" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <http://www.proteoform.org/api> ;
+    sc:url "http://human-proteoform-atlas.org" .
 
 <https://bio.tools/HRMAn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3382,
@@ -34008,7 +27204,7 @@ HRMAn enables you to automatically analyse parameters of host-pathogen interacti
     sc:url "https://hrman.org/" .
 
 <https://bio.tools/HSIC_Lasso> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3360,
         edam:topic_3517,
@@ -34025,7 +27221,7 @@ HRMAn enables you to automatically analyse parameters of host-pathogen interacti
     sc:url "https://github.com/riken-aip/pyHSICLasso" .
 
 <https://bio.tools/HSMRF> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_2269,
@@ -34044,7 +27240,7 @@ This repository contains code for analyses from "Locally adaptive Bayesian birth
     sc:url "http://github.com/afmagee/hsmrfbdp" .
 
 <https://bio.tools/HTRgene> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0780,
@@ -34063,7 +27259,7 @@ This program was designed for integrating analysis of multiple heterogeneous tim
     sc:url "http://biohealth.snu.ac.kr/software/HTRgene" .
 
 <https://bio.tools/HULK> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3174,
         edam:topic_3697,
@@ -34086,7 +27282,7 @@ This program was designed for integrating analysis of multiple heterogeneous tim
     biotools:primaryContact "Will Rowe" .
 
 <https://bio.tools/HUPAN> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0196,
@@ -34102,27 +27298,8 @@ This program was designed for integrating analysis of multiple heterogeneous tim
     sc:name "HUPAN" ;
     sc:url "http://cgm.sjtu.edu.cn/hupan/" .
 
-<https://bio.tools/HVCoP> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3263,
-        edam:topic_3303,
-        edam:topic_3474 ;
-    sc:citation <https://doi.org/10.2196/14545>,
-        "pmcid:PMC6906624",
-        "pubmed:31774401" ;
-    sc:description """Quantifying Use of a Health Virtual Community of Practice for General Practitioners' Continuing Professional Development.
-
-BACKGROUND:Health care practitioners (HPs), in particular general practitioners (GPs), are increasingly adopting Web-based social media platforms for continuing professional development (CPD). As GPs are restricted by time, distance, and demanding workloads, a health virtual community of practice (HVCoP) is an ideal solution to replace face-to-face CPD with Web-based CPD. However, barriers such as time and work schedules may limit participation in an HVCoP. Furthermore, it is difficult to gauge whether GPs engage actively or passively in HVCoP knowledge-acquisition for Web-based CPD, as GPs' competencies are usually measured with pre- and posttests.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'GPs', 'Igloo', 'CPD'""" ;
-    sc:featureList edam:operation_3283,
-        edam:operation_3799 ;
-    sc:name "HVCoP" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31774401" .
-
 <https://bio.tools/HaGiS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_0780,
@@ -34137,7 +27314,7 @@ BACKGROUND:Health care practitioners (HPs), in particular general practitioners
     sc:url "https://openplantpathology.github.io/hagis" .
 
 <https://bio.tools/HaTSPiL> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3168,
@@ -34158,32 +27335,8 @@ HaTSPiL is a a Python pipeline for High-Throughput Sequencing analysis. It has b
     sc:name "HaTSPiL" ;
     sc:url "https://github.com/dodomorandi/hatspil" .
 
-<https://bio.tools/HaloTag> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0128,
-        edam:topic_0632,
-        edam:topic_2830,
-        edam:topic_3047,
-        edam:topic_3557 ;
-    sc:citation <https://doi.org/10.1093/NAR/GKZ1086>,
-        "pubmed:31752022" ;
-    sc:description """HaloTag-based conjugation of proteins to barcoding-oligonucleotides.
-
-Collection of Flexi HaloTag Clones.
-
-The ABRC distributes clones for in-vitro expression of Arabidopsis ORFs fused to Promega's HaloTag® fusion tag generated by Joe Ecker at The SALK Institute.
-
-The pIX-HALO vector is a custom-built in vitro expression vector suitable for protein expression in both wheat germ lysate and rabbit reticulocyte expression systems. Expression from either T7 or SP6 polymerase creates an N-terminal fusion of a HaloTag® and the ORF clone. attB1 and attB2 Gateway recombination linkers flank the ORF clone insertion site.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'HaloTag-based'""" ;
-    sc:featureList edam:operation_0308,
-        edam:operation_2492,
-        edam:operation_3200,
-        edam:operation_3630 ;
-    sc:name "HaloTag" ;
-    sc:url "http://www.kazusa.or.jp/kop/halotag/" .
-
 <https://bio.tools/Haloarchaeal_Genomes> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0749,
@@ -34201,58 +27354,8 @@ The pIX-HALO vector is a custom-built in vitro expression vector suitable for pr
     sc:url "https://halo.umbc.edu/" ;
     biotools:primaryContact "Shiladitya DasSarma" .
 
-<https://bio.tools/Halobenzenes_Xylenes> a sc:SoftwareApplication ;
-    sc:citation <https://doi.org/10.26434/CHEMRXIV.11424783.V1> ;
-    sc:description """Geometric and Energetic Data from Quantum Chemical Calculations of Halobenzenes and Xylenes.
-
-<div>This article presents theoretical data on geometric and< div><div>energetic features of halobenzenes and xylenes. Data were obtained from ab initio geometry optimization and frequency calculations at HF, B3LYP, MP2 and CCSD levels of theory on 6-311++G(d,p) basis set. In total, 1504 structures of halobenzenes, three structures of xylenes and one structure< div><div>of benzene were generated and processed by custom-made codes in Mathematica. The quantum chemical calculation was completed in Q-Chem software package. Geometric and energetic data of the compounds are presented in this paper as supplementary tables. Raw output files as well as codes and scripts associated with production and extraction of data are also provided.< div>.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'halobenzenes', 'xylenes', 'Q-Chem', 'Halobenzenes Xylenes divThis'""" ;
-    sc:name "Halobenzenes Xylenes" ;
-    sc:url "https://doi.org/10.26434/CHEMRXIV.11424783.V1" .
-
-<https://bio.tools/Halodiazene> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0154 ;
-    sc:citation <https://doi.org/10.26434/CHEMRXIV.9895874.V1> ;
-    sc:description """Geometric and Energetic Data from Ab Initio Calculations of Haloethene, Haloimine, Halomethylphosphine, Haloiminophosphine, Halodiazene, Halodiphosphene and Halocyclopropane.
-
-<p>This article presents theoretical data on geometric and energetic features of halogenated compounds of cyclopropane (∆) and ethene (C=C), imine (C=N), methylphosphine (C=P), iminophosphine (N=P), diazene (N=N) and diphosphene (P=P). The data were obtained from <i>ab initio< i> geometric optimization and frequency calculations at HF, B3LYP, MP2 and CCSD levels of theory on 6-311++G(d,p) basis set. Input structures were generated by shell scripts and run by Q-Chem quantum chemical package. The output files were processed to extract geometric and energetic information by Wolfram Mathematica.< p>.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'Halodiphosphene', 'methylphosphine', 'diazene', 'Halomethylphosphine'""" ;
-    sc:featureList edam:operation_2409 ;
-    sc:name "Halodiazene" ;
-    sc:url "https://doi.org/10.26434/CHEMRXIV.9895874.V1" .
-
-<https://bio.tools/HapMap> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0102,
-        edam:topic_0625,
-        edam:topic_2885,
-        edam:topic_3056,
-        edam:topic_3518 ;
-    sc:citation <https://doi.org/10.1007/S00414-019-02184-0>,
-        "pubmed:31760471" ;
-    sc:description """Ancestry-informative marker (AIM) SNP panel for the Malay population.
-
-Medical Genetics and Human Variation.
-
-A recent computer security audit has revealed security flaws in the legacy HapMap site that require NCBI to take it down immediately.
-
-||| COMMON LINK WITH (PUB. & NAME DIFFERENT) bio.tools/OMSSA (NCBI.NLM.NIH.GOV), bio.tools/btod_blast (NCBI.NLM.NIH.GOV), bio.tools/blast (NCBI.NLM.NIH.GOV), bio.tools/pubchem_bioassay_service (NCBI.NLM.NIH.GOV), bio.tools/pubchem (NCBI.NLM.NIH.GOV).
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'Malay', 'PCAIMs', 'Ancestry-informative', 'PCA-correlated'""" ;
-    sc:featureList edam:operation_0484,
-        edam:operation_0487,
-        edam:operation_3196,
-        edam:operation_3454 ;
-    sc:name "HapMap" ;
-    sc:url "http://hapmap.ncbi.nlm.nih.gov/" .
-
 <https://bio.tools/Haplin> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2885,
@@ -34276,13 +27379,14 @@ A recent computer security audit has revealed security flaws in the legacy HapMa
     biotools:primaryContact "Hakon K. Gjessing" .
 
 <https://bio.tools/HaploReg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0634,
         edam:topic_2885 ;
-    sc:citation <https://doi.org/10.1002/JGM.3123>,
-        "pubmed:31433532" ;
+    sc:citation <https://doi.org/10.1093/nar/gkr917>,
+        "pmcid:PMC3245002",
+        "pubmed:22064851" ;
     sc:description "Association between DIO2 polymorphism and the risk of Kashin-Beck disease in the Tibetan population | HaploReg is a tool for exploring annotations of the noncoding genome at variants on haplotype blocks, such as candidate regulatory SNPs at disease-associated loci. Using LD information from the 1000 Genomes Project, linked SNPs and small indels can be visualized along with chromatin state and protein binding annotation from the Roadmap Epigenomics and ENCODE projects, sequence conservation across mammals, the effect of SNPs on regulatory motifs, and the effect of SNPs on expression from eQTL studies. HaploReg is designed for researchers developing mechanistic hypotheses of the impact of non-coding variants on clinical phenotypes and normal variation" ;
     sc:featureList edam:operation_0484,
         edam:operation_0487,
@@ -34291,7 +27395,7 @@ A recent computer security audit has revealed security flaws in the legacy HapMa
     sc:url "https://pubs.broadinstitute.org/mammals/haploreg/haploreg.php" .
 
 <https://bio.tools/HaploTypo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0199,
@@ -34312,7 +27416,7 @@ HaploTypo is a pipeline suited to map variants into haplotypes in genetic variat
     sc:url "https://github.com/gabaldonlab/haplotypo" .
 
 <https://bio.tools/Haploscope> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3056,
@@ -34333,32 +27437,8 @@ HaploTypo is a pipeline suited to map variants into haplotypes in genetic variat
     sc:url "http://haploscope.scheetlabsoftware.org/" ;
     biotools:primaryContact "Paul Scheet" .
 
-<https://bio.tools/Harmony_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0108,
-        edam:topic_0625,
-        edam:topic_2229,
-        edam:topic_3170,
-        edam:topic_3308 ;
-    sc:citation <https://doi.org/10.1038/S41592-019-0619-0>,
-        "pmcid:PMC6884693",
-        "pubmed:31740819" ;
-    sc:description """Fast, sensitive and accurate integration of single-cell data with Harmony.
-
-Scalable integration of single cell RNAseq data for batch correction and meta analysis.
-
-Check out the latest preprint of Harmony on bioRxiv.
-
-Harmony has been tested on R versions >= 3.4. Please consult the DESCRIPTION file for more details on required R packages. Harmony has been tested on Linux, OS X, and Windows platforms.
-
-||| NAME EQUAL TO (PUB. DIFFERENT) bio.tools/harmony""" ;
-    sc:featureList edam:operation_3435,
-        edam:operation_3659,
-        edam:operation_3891 ;
-    sc:name "Harmony_autogenerated" ;
-    sc:url "https://github.com/immunogenomics/harmony" .
-
 <https://bio.tools/HashClone> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3063 ;
     sc:author "Francesca Cordero",
@@ -34374,7 +27454,7 @@ Harmony has been tested on R versions >= 3.4. Please consult the DESCRIPTION fil
     biotools:primaryContact "Raffaele Calogero" .
 
 <https://bio.tools/Hass> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0625,
@@ -34398,7 +27478,7 @@ The R packages used in this repository are shown below:.""" ;
     sc:url "https://github.com/IHSMFruitCrops/Hass-genotyping" .
 
 <https://bio.tools/HastaLaVista> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3172,
@@ -34425,7 +27505,7 @@ hastaLaVista is developed and tested using Chrome, although it is known to work
     sc:url "https://github.com/jwist/hastaLaVista" .
 
 <https://bio.tools/HawkDock> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0128,
@@ -34450,7 +27530,7 @@ hastaLaVista is developed and tested using Chrome, although it is known to work
         "Tingjun Hou" .
 
 <https://bio.tools/Hayai-Annotation_Plants> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0637,
         edam:topic_0780,
@@ -34469,68 +27549,8 @@ hastaLaVista is developed and tested using Chrome, although it is known to work
     sc:url "https://github.com/kdri-genomics/Hayai-Annotation-Plants" ;
     biotools:primaryContact "Andrea Ghelfi" .
 
-<https://bio.tools/HdaB> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0140,
-        edam:topic_0654,
-        edam:topic_2229 ;
-    sc:citation <https://doi.org/10.1093/NAR/GKZ1193>,
-        "pubmed:31875223" ;
-    sc:description """a novel and conserved DnaA-related protein that targets the RIDA process to stimulate replication initiation.
-
-Exquisite control of the DnaA initiator is critical to ensure that bacteria initiate chromosome replication in a cell cycle-coordinated manner. In many bacteria, the DnaA-related and replisome-associated Hda HdaA protein interacts with DnaA to trigger the Regulatory Inactivation of DnaA (RIDA) and prevent over-initiation events. In the Caulobacter crescentus Alphaproteobacterium, the RIDA process also targets DnaA for its rapid proteolysis by Lon. The impact of the RIDA process on adaptation of bacteria to changing environments remains unexplored. Here, we identify a novel and conserved DnaA-related protein, named HdaB, and show that homologs from three different Alphaproteobacteria can inhibit the RIDA process, leading to over-initiation and cell death when expressed in actively growing C. crescentus cells.
-
-||| HOMEPAGE MISSING!""" ;
-    sc:featureList edam:operation_3454 ;
-    sc:name "HdaB" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31875223" .
-
-<https://bio.tools/Health_United_States_2017> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0634,
-        edam:topic_3063,
-        edam:topic_3305,
-        edam:topic_3390,
-        edam:topic_3400 ;
-    sc:citation "pubmed:30702833" ;
-    sc:description """With Special Feature on Mortality.
-
-Centers for Disease Control and Prevention. CDC twenty four seven. Saving Lives, Protecting People.
-
-National Center for Health Statistics.
-
-Health, United States is an annual report on trends in health statistics""" ;
-    sc:name "Health United States 2017" ;
-    sc:url "http://www.cdc.gov/nchs/hus.htm" .
-
-<https://bio.tools/Hecaton> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0780,
-        edam:topic_3673,
-        edam:topic_3810 ;
-    sc:citation <https://doi.org/10.1101/720805> ;
-    sc:description "> HOMEPAGE BROKEN! | reliably detecting copy number variation in plant genomes using short read sequencing data | Abstract Copy number variation (CNV) is thought to actively contribute to adaptive evolution of plant species. While many computational algorithms are available to detect copy number variation from whole genome sequencing datasets, the typical complexity of plant data likely introduces false positive calls. To enable reliable and comprehensive detection of CNV in plant genomes, we developed Hecaton, a novel computational workflow tailored to plants, that integrates calls from multiple state-of-the-art algorithms through a machine-learning approach. In this paper, we demonstrate that Hecaton outperforms current methods when applied to short read sequencing data of A. thaliana , rice, maize, and tomato" ;
-    sc:featureList edam:operation_0452,
-        edam:operation_0525,
-        edam:operation_3196 ;
-    sc:name "Hecaton" ;
-    sc:url "http://wur.nl/bioinformatics/hecaton" .
-
-<https://bio.tools/Hedera> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0621,
-        edam:topic_3068,
-        edam:topic_3315 ;
-    sc:citation <https://doi.org/10.20944/PREPRINTS201910.0071.V1> ;
-    sc:description """Challenges and Emerging Solutions for Public Blockchains.
-
-The Hedera Governing Council consists of up to 39 term-limited and highly diversified leading organizations, reflecting up to 18 unique industries globally.
-
-The Hedera Governing Council consists of up to 39 term-limited and highly diversified leading organizations and enterprises, reflecting up to 18 unique industries globally. Council members are committed to governing software changes, while bringing stability and continued decentralization to the public network.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'Blockchain', 'Hedera Hashgraph', 'Bitcoin', 'bringing'""" ;
-    sc:featureList edam:operation_3283 ;
-    sc:name "Hedera" ;
-    sc:url "http://www.hedera.com/council" .
-
 <https://bio.tools/HetEnc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -34546,7 +27566,7 @@ The Hedera Governing Council consists of up to 39 term-limited and highly divers
     sc:url "https://github.com/seldas/HetEnc_Code" .
 
 <https://bio.tools/HeveaDB> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3168,
@@ -34560,7 +27580,7 @@ The Hedera Governing Council consists of up to 39 term-limited and highly divers
     sc:url "http://hevea.catas.cn" .
 
 <https://bio.tools/HiCBricks> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0769,
@@ -34578,7 +27598,7 @@ HiCBricks is a library designed for handling large high-resolution Hi-C datasets
     sc:url "http://bioconductor.org/packages/devel/bioc/html/HiCBricks.html" .
 
 <https://bio.tools/HiCNAtra> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_2640,
@@ -34597,7 +27617,7 @@ HiCNAtra is a MATLAB-based tool that accepts HDF5 files, the output of hiclib af
     sc:url "https://github.com/AISKhalil/HiCNAtra" .
 
 <https://bio.tools/HiCNN> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0749,
@@ -34616,7 +27636,7 @@ HiCNAtra is a MATLAB-based tool that accepts HDF5 files, the output of hiclib af
     biotools:primaryContact "Zheng Wang" .
 
 <https://bio.tools/HiCeekR> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3169,
@@ -34640,7 +27660,7 @@ HiCeekR is a novel Shiny based R package for Hi-C data analysis""" ;
     sc:url "https://github.com/lucidif/HiCeekR" .
 
 <https://bio.tools/HiLight-PTM> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -34655,7 +27675,7 @@ HiCeekR is a novel Shiny based R package for Hi-C data analysis""" ;
     sc:url "https://harrywhitwell.shinyapps.io/hilight-ptm/" .
 
 <https://bio.tools/HiPFSTA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0593,
         edam:topic_3384,
@@ -34675,7 +27695,7 @@ HiCeekR is a novel Shiny based R package for Hi-C data analysis""" ;
     sc:url "https://github.com/michaelmell/hipfsta" .
 
 <https://bio.tools/HiPPO> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_2229,
@@ -34693,7 +27713,7 @@ High-dimensional mass cytometry (Cytometry by Time-Of-Flight; CyTOF) is a multip
     sc:url "http://www.hippopanda.org/hippo.php" .
 
 <https://bio.tools/HighResNPS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_2840,
@@ -34712,31 +27732,8 @@ High-dimensional mass cytometry (Cytometry by Time-Of-Flight; CyTOF) is a multip
     sc:url "http://HighResNPS.com" ;
     biotools:primaryContact "Marie Mardal" .
 
-<https://bio.tools/High_Precision_RPPA> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0108,
-        edam:topic_0121,
-        edam:topic_0602,
-        edam:topic_3379,
-        edam:topic_3518 ;
-    sc:citation <https://doi.org/10.1007/978-981-32-9755-5_3>,
-        "pubmed:31820382" ;
-    sc:description """Concept, Features, and Application Performance of the Integrated Zeptosens Platform.
-
-RPPA Reverse Phase Protein Array Services.
-
-Our Reverse Phase Protein Array (RPPA) core facility offers multiplex cell signaling pathway mapping studies on a fee-for-service basis.
-
-High-Throughput Protein Profiling.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'RPPA'""" ;
-    sc:featureList edam:operation_2495,
-        edam:operation_3083,
-        edam:operation_3454 ;
-    sc:name "High Precision RPPA" ;
-    sc:url "https://www.nmi-tt.de/pharmaservices/rppa/" .
-
 <https://bio.tools/Hintra> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_3293 ;
@@ -34750,32 +27747,8 @@ High-Throughput Protein Profiling.
     sc:name "Hintra" ;
     sc:url "https://github.com/sahandk/HINTRA" .
 
-<https://bio.tools/Hipathia_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0199,
-        edam:topic_0203,
-        edam:topic_0602,
-        edam:topic_0634,
-        edam:topic_3518 ;
-    sc:citation <https://doi.org/10.1038/S41598-019-55454-7>,
-        "pmcid:PMC6908734",
-        "pubmed:31831811" ;
-    sc:description """Using mechanistic models for the clinical interpretation of complex genomic variation.
-
-The sustained generation of genomic data in the last decade has increased the knowledge on the causal mutations of a large number of diseases, especially for highly penetrant Mendelian diseases, typically caused by a unique or a few genes. However, the discovery of causal genes in complex diseases has been far less successful. Many complex diseases are actually a consequence of the failure of complex biological modules, composed by interrelated proteins, which can happen in many different ways, which conferring a multigenic nature to the condition that can hardly be attributed to one or a few genes.
-
-||| NAME (Hipathia) SIMILAR TO (PUB. DIFFERENT) bio.tools/hipathia (hipathia).
-
-||| COMMON LINK WITH (PUB. & NAME DIFFERENT) bio.tools/vismapper (BABELOMICS.ORG), bio.tools/pathiways (BABELOMICS.ORG), bio.tools/team (BABELOMICS.ORG).
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'mechanistic'""" ;
-    sc:featureList edam:operation_0331,
-        edam:operation_0533,
-        edam:operation_3562 ;
-    sc:name "Hipathia_autogenerated" ;
-    sc:url "http://hipathia.babelomics.org" .
-
 <https://bio.tools/HippMapp3r> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3360,
         edam:topic_3384,
@@ -34792,7 +27765,7 @@ Free document hosting provided by Read the Docs""" ;
     sc:url "https://hippmapp3r.readthedocs.io" .
 
 <https://bio.tools/HisgAtlas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0634,
@@ -34816,7 +27789,7 @@ HisgAtlas is a manual curation database for human immunosuppression genes.""" ;
     sc:url "http://biokb.ncpsb.org/HisgAtlas/" .
 
 <https://bio.tools/HistoneAnalysisWorkflow> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0601,
@@ -34838,7 +27811,7 @@ Raw data and example scripts can be found at: doi:10.25345/C5ZQ0F.""" ;
     sc:url "https://github.com/DenuLab/HistoneAnalysisWorkflow" .
 
 <https://bio.tools/HmtVar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API" ;
     sc:applicationSubCategory edam:topic_0218,
         edam:topic_0625,
@@ -34863,7 +27836,7 @@ Data are gathered from HmtVar's twin database HmtDB, and further integrated with
     sc:url "https://www.hmtvar.uniba.it/" .
 
 <https://bio.tools/HogProf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0621,
@@ -34884,7 +27857,7 @@ HogProf is an extensible and tunable approach to phylogenetic profiling using or
     sc:url "https://github.com/DessimozLab/HogProf" .
 
 <https://bio.tools/Holden> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3174,
         edam:topic_3379,
@@ -34897,7 +27870,7 @@ HogProf is an extensible and tunable approach to phylogenetic profiling using or
     sc:url "https://github.com/MSBradshaw/Holden" .
 
 <https://bio.tools/Holmes> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btx492> ;
     sc:description "Graphical tool for development, simulation and analysis of Petri net based models of complex biological systems." ;
@@ -34911,18 +27884,8 @@ HogProf is an extensible and tunable approach to phylogenetic profiling using or
     sc:url "http://www.cs.put.poznan.pl/mradom/Holmes/holmes.html" ;
     biotools:primaryContact "Piotr Formanowicz" .
 
-<https://bio.tools/Hoosier_Vocal_Emotions_Corpus> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3360,
-        edam:topic_3419 ;
-    sc:citation <https://doi.org/10.3758/S13428-019-01288-0>,
-        "pubmed:31485866" ;
-    sc:description "A validated set of North American English pseudo-words for evaluating emotion processing | Second Language Psycholinguistics | [ Second language psycholinguistics ] | The Hoosier Vocal Emotions Corpus | The \"Hoosier Vocal Emotions Corpus\" is a stimulus set of recorded pseudo-words based on the pronunciation rules of English. The corpus contains 73 controlled audio pseudo-words uttered by two actresses in five different emotions (i.e., happiness, sadness, fear, anger, disgust) and in a neutral tone, yielding 1,763 audio files. In Darcy & Fontaine (2019, Behavior Research Methods), viewable at this link: https://rdcu.be/bQk7G, we describe the corpus as well as a validation study of the pseudo-words. A total of 96 native English speakers completed a forced-choice emotion identification task. All emotions were recognized better than chance overall, with substantial variability among the different tokens" ;
-    sc:featureList edam:operation_2428 ;
-    sc:name "Hoosier Vocal Emotions Corpus" ;
-    sc:url "https://psycholinguistics.indiana.edu/hoosiervocalemotions.htm" .
-
 <https://bio.tools/Hotspot_analysis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102 ;
     sc:citation <https://doi.org/10.7287/PEERJ.PREPRINTS.2204V2>,
@@ -34939,7 +27902,7 @@ Hotspot Analysis Plugin for QGIS.""" ;
     sc:url "https://github.com/danioxoli/HotSpotAnalysis_Plugin" .
 
 <https://bio.tools/Housekeeping> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0632,
@@ -34964,7 +27927,7 @@ Web-based tools to search tissue specific housekeeping genes.""" ;
     sc:url "http://www.housekeeping.unicamp.br" .
 
 <https://bio.tools/HowDe-SBT> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3170 ;
     sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTZ662>,
@@ -34976,7 +27939,7 @@ Web-based tools to search tissue specific housekeeping genes.""" ;
     sc:url "https://github.com/medvedevgroup/HowDeSBT" .
 
 <https://bio.tools/HumCFS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0634,
@@ -34998,26 +27961,21 @@ Web-based tools to search tissue specific housekeeping genes.""" ;
 
 <https://bio.tools/HumanMine> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ],
+            sc:additionalType "http://edamontology.org/data_2353" ;
+            sc:name "Ontology data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2353" ;
-            sc:name "Ontology data" ;
-            sc:sameAs "http://edamontology.org/data_2353" ] ;
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:name "Sequence features" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ],
+            sc:additionalType "http://edamontology.org/data_3786" ;
+            sc:name "Query script" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3786" ;
-            sc:name "Query script" ;
-            sc:sameAs "http://edamontology.org/data_3786" ],
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:name "Sequence features" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3753" ;
-            sc:name "Over-representation data" ;
-            sc:sameAs "http://edamontology.org/data_3753" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3753" ;
+            sc:name "Over-representation data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application",
         "Web service" ;
@@ -35040,17 +27998,8 @@ Web-based tools to search tissue specific housekeeping genes.""" ;
     sc:softwareVersion "6.0 2019 May" ;
     sc:url "https://www.humanmine.org/humanmine" .
 
-<https://bio.tools/Human_Factors_Integration_Toolset> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0089,
-        edam:topic_0749 ;
-    sc:citation <https://doi.org/10.1080/00140139.2019.1572228>,
-        "pubmed:31466512" ;
-    sc:description "> LOW CONFIDENCE! | Assessing human factors and ergonomics capability in organisations | Human Factors Integration Toolset- see update for free file download | Human Factors Integration Toolset- see update for free file download : Creation of a tool that reports the level of HF integration and maturity in an organization | Human Factors Integration Toolset- see update for free file download : Michael Greig : 1 updates : Research Project" ;
-    sc:name "Human Factors Integration Toolset" ;
-    sc:url "https://www.researchgate.net/project/Human-Factors-Integration-Toolset" .
-
 <https://bio.tools/Hurdle> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -35066,7 +28015,7 @@ Web-based tools to search tissue specific housekeeping genes.""" ;
     sc:url "https://github.com/amcdavid/HurdleNormal" .
 
 <https://bio.tools/HyAsP> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3315,
@@ -35085,7 +28034,7 @@ Web-based tools to search tissue specific housekeeping genes.""" ;
     biotools:primaryContact "Cedric Chauve" .
 
 <https://bio.tools/HyPhy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0084,
@@ -35095,6 +28044,8 @@ Web-based tools to search tissue specific housekeeping genes.""" ;
         "Sergei L Kosakovsky Pond",
         "Steven Weaver" ;
     sc:citation <https://doi.org/10.1007/978-1-4939-8736-8_6>,
+        <https://doi.org/10.1093/bioinformatics/bti079>,
+        "pubmed:15509596",
         "pubmed:30298394" ;
     sc:description "Software package for the analysis of genetic sequences using techniques in phylogenetics, molecular evolution, and machine learning." ;
     sc:featureList edam:operation_2238 ;
@@ -35109,7 +28060,7 @@ Web-based tools to search tissue specific housekeeping genes.""" ;
     sc:url "http://hyphy.org" .
 
 <https://bio.tools/HybPiper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0194,
         edam:topic_0196,
@@ -35133,24 +28084,8 @@ HybPiper was designed for targeted sequence capture, in which DNA sequencing lib
     sc:name "HybPiper" ;
     sc:url "https://github.com/mossmatters/HybPiper" .
 
-<https://bio.tools/HybridAtt> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0091,
-        edam:topic_3334,
-        edam:topic_3474 ;
-    sc:citation <https://doi.org/10.1186/S12859-019-3075-Z>,
-        "pmcid:PMC6886163",
-        "pubmed:31787093" ;
-    sc:description """A hybrid self-attention deep learning framework for multivariate sleep stage classification.
-
-BACKGROUND:Sleep is a complex and dynamic biological process characterized by different sleep patterns. Comprehensive sleep monitoring and analysis using multivariate polysomnography (PSG) records has achieved significant efforts to prevent sleep-related disorders. To alleviate the time consumption caused by manual visual inspection of PSG, automatic multivariate sleep stage classification has become an important research topic in medical and bioinformatics. RESULTS:We present a unified hybrid self-attention deep learning framework, namely HybridAtt, to automatically classify sleep stages by capturing channel and temporal correlations from multivariate PSG records. We construct a new multi-view convolutional representation module to learn channel-specific and global view features from the heterogeneous PSG inputs.
-
-||| HOMEPAGE MISSING!""" ;
-    sc:featureList edam:operation_3891 ;
-    sc:name "HybridAtt" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31787093" .
-
 <https://bio.tools/HybridMolDB> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0202,
@@ -35164,26 +28099,8 @@ BACKGROUND:Sleep is a complex and dynamic biological process characterized by di
     sc:name "HybridMolDB" ;
     sc:url "http://www.idruglab.com/HybridMolDB/index.php" .
 
-<https://bio.tools/Hybrid_RAID_Reconstructor> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3382 ;
-    sc:citation <https://doi.org/10.1111/1556-4029.14258>,
-        "pubmed:31868925" ;
-    sc:description """Reassembling Linux-based Hybrid RAID.
-
-Tool of rebuild RAID against Linux based hybrid RAID.
-
-This tool can rebuild RAID against Linux based hybrid RAID. This tool was developed in python.
-
-input : only raw image file. input the directory path.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'RAID', 'hybrid RAID', 'RAID Reconstructor', 'RAID reassembly'""" ;
-    sc:featureList edam:operation_1812 ;
-    sc:license "GPL-3.0" ;
-    sc:name "Hybrid RAID Reconstructor" ;
-    sc:url "https://github.com/antares0531/HybridRAIDReconstructor" .
-
 <https://bio.tools/HydroSight> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_2269,
@@ -35207,26 +28124,21 @@ HydroSight is a highly flexible statistical toolbox for quantitative hydrogeolog
 
 <https://bio.tools/HymenopteraMine> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ],
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:name "Sequence features" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2353" ;
-            sc:name "Ontology data" ;
-            sc:sameAs "http://edamontology.org/data_2353" ] ;
+            sc:additionalType "http://edamontology.org/data_2353" ;
+            sc:name "Ontology data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3786" ;
-            sc:name "Query script" ;
-            sc:sameAs "http://edamontology.org/data_3786" ],
+            sc:additionalType "http://edamontology.org/data_3753" ;
+            sc:name "Over-representation data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ],
+            sc:additionalType "http://edamontology.org/data_3786" ;
+            sc:name "Query script" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3753" ;
-            sc:name "Over-representation data" ;
-            sc:sameAs "http://edamontology.org/data_3753" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:name "Sequence features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application",
         "Web service" ;
@@ -35250,7 +28162,7 @@ HydroSight is a highly flexible statistical toolbox for quantitative hydrogeolog
     sc:url "http://hymenopteragenome.org/hymenopteramine" .
 
 <https://bio.tools/HypercubeME> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0199,
@@ -35263,7 +28175,7 @@ HydroSight is a highly flexible statistical toolbox for quantitative hydrogeolog
     sc:url "https://github.com/ivankovlab/HypercubeME.git" .
 
 <https://bio.tools/Hypergraph_Dynamic_Correlation> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3170,
@@ -35286,7 +28198,7 @@ HydroSight is a highly flexible statistical toolbox for quantitative hydrogeolog
     biotools:primaryContact <https://orcid.org/0000-0003-2502-1628> .
 
 <https://bio.tools/Hypocotyl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0780,
@@ -35313,7 +28225,7 @@ The pretrained model used in the research article can be downloaded here.""" ;
     sc:url "https://github.com/biomag-lab/hypocotyl-UNet" .
 
 <https://bio.tools/Hyppo-X> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0780,
         edam:topic_3298,
@@ -35335,65 +28247,8 @@ This software library is built to delve the insights of a complex high dimension
     sc:name "Hyppo-X" ;
     sc:url "https://xperthut.github.io/HYPPO-X" .
 
-<https://bio.tools/I-CONECT> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0634,
-        edam:topic_3305,
-        edam:topic_3379,
-        edam:topic_3399 ;
-    sc:citation <https://doi.org/10.1093/GERONI/IGZ038.825>,
-        "pmcid:PMC6845470" ;
-    sc:description """CHALLENGES AND OPPORTUNITIES.
-
-The I-CONECT research study is exploring how social conversation can help improve memory and may prevent dementia in older adults.
-
-Research shows that remaining socially active later in life can have a positive impact on memory and mental function. I-CONECT is exploring how social conversation can help improve memory and may prevent dementia or Alzheimer’s disease in older adults. In this study, participants connect with the research team using senior-friendly technology for fun and engaging conversations in the comfort of their own home. We are currently enrolling volunteers aged 75 and older.
-
-||| COMMON LINK WITH (PUB. & NAME DIFFERENT) bio.tools/Diffeomorphic (IC.OUP.COM)""" ;
-    sc:name "I-CONECT" ;
-    sc:url "https://www.i-conect.org" .
-
-<https://bio.tools/I-CONECT_project> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0634,
-        edam:topic_3305,
-        edam:topic_3379,
-        edam:topic_3399 ;
-    sc:citation <https://doi.org/10.1093/GERONI/IGZ038.824>,
-        "pmcid:PMC6845174" ;
-    sc:description """CAN SOCIAL INTERACTION IMPROVE COGNITIVE FUNCTIONS AMONG SOCIALLY ISOLATED OLDER ADULTS?.
-
-The I-CONECT research study is exploring how social conversation can help improve memory and may prevent dementia in older adults.
-
-Exploring the Effects of Social Interaction on Memory.
-
-Research shows that remaining socially active later in life can have a positive impact on memory and mental function. I-CONECT is exploring how social conversation can help improve memory and may prevent dementia or Alzheimer’s disease in older adults. In this study, participants connect with the research team using senior-friendly technology for fun and engaging conversations in the comfort of their own home. We are currently enrolling volunteers aged 75 and older.
-
-||| COMMON LINK WITH (PUB. & NAME DIFFERENT) bio.tools/Diffeomorphic (IC.OUP.COM).
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'I-CONECT'""" ;
-    sc:featureList edam:operation_3435 ;
-    sc:name "I-CONECT project" ;
-    sc:url "https://www.i-conect.org" .
-
-<https://bio.tools/I-CorpsaNCATS> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0108,
-        edam:topic_0605,
-        edam:topic_3303,
-        edam:topic_3360,
-        edam:topic_3379 ;
-    sc:citation <https://doi.org/10.1017/CTS.2017.142>,
-        "pmcid:PMC6798670" ;
-    sc:description """Toward entrepreneurial training for clinical and translational investigators and lessons learned in team-based customer and stakeholder discovery.
-
-OBJECTIVES SPECIFIC AIMS: The goal of this abstract presentation is to share lessons learned from participation in the NIH SBIR I-Corps Train-The-Trainer Program, discuss our experiences offering programs at our local institutions, and communicate our plans to develop an I-Corps@NCATS program that can be disseminated across the CTSA network. We believe that an I-Corps@NCATS program will enhance the process of scientific translation by taking best practices from NSF I-Corps and adapting the program to meet the needs of biomedical scientists in academic medical centers.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'NSF I-Corps', 'I-Corps', 'SBIR I-Corps'""" ;
-    sc:name "I-CorpsaNCATS" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6798670/" .
-
 <https://bio.tools/I-Impute> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3170,
@@ -35407,7 +28262,7 @@ OBJECTIVES SPECIFIC AIMS: The goal of this abstract presentation is to share les
     sc:url "https://github.com/xikanfeng2/I-Impute" .
 
 <https://bio.tools/I3> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0625,
@@ -35427,7 +28282,7 @@ Intuitive Integrative Interpretation (I3) of complex genetic data.
     sc:url "http://suprahex.r-forge.r-project.org/I3.html" .
 
 <https://bio.tools/IA-Lab> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3374,
@@ -35444,7 +28299,7 @@ Intuitive Integrative Interpretation (I3) of complex genetic data.
     sc:url "https://github.com/amcorrigan/ia-lab" .
 
 <https://bio.tools/IAMBEE> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0199,
@@ -35467,15 +28322,8 @@ Intuitive Integrative Interpretation (I3) of complex genetic data.
     sc:url "http://bioinformatics.intec.ugent.be/iambee/" ;
     biotools:primaryContact <https://orcid.org/0000-0002-9998-2408> .
 
-<https://bio.tools/IATs> a sc:SoftwareApplication ;
-    sc:citation <https://doi.org/10.3758/S13428-019-01293-3>,
-        "pubmed:31515742" ;
-    sc:description "> MEDIUM CONFIDENCE! | > HOMEPAGE MISSING! | > CORRECT NAME OF TOOL COULD ALSO BE 'IAT', 'Survey-software implicit association tests', 'survey-software IATs IATs', 'survey-software IATs' | Survey-software implicit association tests | The implicit association test (IAT) is widely used in psychology. Unfortunately, the IAT cannot be run within online surveys, requiring researchers who conduct online surveys to rely on third-party tools. We introduce a novel method for constructing IATs using online survey software (Qualtrics); we then empirically assess its validity. Study 1 (student n = 239) revealed good psychometric properties, expected IAT effects, and expected correlations with explicit measures for survey-software IATs. Study 2 (MTurk n = 818) showed predicted IAT effects across four survey-software IATs (ds = 0.82 [Black-White IAT] to 2.13 [insect-flower IAT])" ;
-    sc:name "IATs" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31515742" .
-
 <https://bio.tools/IBD> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3305,
@@ -35488,35 +28336,8 @@ Intuitive Integrative Interpretation (I3) of complex genetic data.
     sc:name "IBD" ;
     sc:url "http://github.com/roohy/IBD" .
 
-<https://bio.tools/IBS_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0102,
-        edam:topic_0625,
-        edam:topic_2885,
-        edam:topic_3056,
-        edam:topic_3518 ;
-    sc:citation <https://doi.org/10.1101/798272> ;
-    sc:description """Attacks on genetic privacy via uploads to genealogical databases.
-
-Create figures for "Attacks on genetic privacy via uploads to genealogical databases" by Michael D. Edge and Graham Coop.
-
-README for gedmatch figures & emails.
-
-The files marked GEDmatch_*_Redacted.pdf are printouts of the display of the GEDmatch 1-to-1 match genome browser. The colour key did not print out so a screenshot is saved out in GEDmatch_ColourKey_Screenshot.png.
-
-Each file is a match between a target and bait kit. The first 3 files are T1 matches with B1, B2, and Bmis. The next 3 files (3-6) the matches for T2 and so on.
-
-The kit numbers assigned by GEDmatch have been redacted out, to prevent reuse.
-
-||| NAME EQUAL TO (PUB. DIFFERENT) bio.tools/ibs""" ;
-    sc:featureList edam:operation_0484,
-        edam:operation_0487,
-        edam:operation_3196,
-        edam:operation_3557 ;
-    sc:name "IBS_autogenerated" ;
-    sc:url "http://github.com/mdedge/IBS_privacy/" .
-
 <https://bio.tools/IBS_privacy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0625,
@@ -35539,7 +28360,7 @@ The files marked GEDmatch_*_Redacted.pdf are printouts of the display of the GED
     sc:url "http://github.com/mdedge/IBS_privacy/" .
 
 <https://bio.tools/IBiSS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0611,
@@ -35558,7 +28379,7 @@ The files marked GEDmatch_*_Redacted.pdf are printouts of the display of the GED
     biotools:primaryContact "Bruno P. Klaholz" .
 
 <https://bio.tools/ICA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3172,
@@ -35575,7 +28396,7 @@ The files marked GEDmatch_*_Redacted.pdf are printouts of the display of the GED
     sc:url "https://github.com/sysbio-curie/ICA-in-Cancer-research-review-materials" .
 
 <https://bio.tools/ICCS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0593,
@@ -35593,28 +28414,8 @@ User-fiendly code for image cross-correlation specroscopy (ICCS) analysis based
     sc:name "ICCS" ;
     sc:url "https://github.com/llanzano/ICCS" .
 
-<https://bio.tools/ICG> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0621,
-        edam:topic_3300,
-        edam:topic_3382 ;
-    sc:citation <https://doi.org/10.1093/GERONI/IGZ038.3252>,
-        "pmcid:PMC6845190" ;
-    sc:description """SOCIAL MEDIA RESOURCES FOR BILINGUAL CAREGIVERS OF STROKE SURVIVORS.
-
-AbstractBackground: Stroke survivors experience long-term disability also affecting informal caregivers (ICG). With current technology, social media might be the only way for ICG to gain training access support. What resources are available for ICG of older adults who survived stroke (OASS). Objective: To identify analyze types of bilingual social media resources available to ICG of OASS Methods: Facebook data was bilingually collected (Spanish), including most popular groups and pages based on search engines containing terms such as stroke, CVA, caregiver. Similar numbers of groups (35 English vs. 52 Spanish) and pages (32 English vs. 34 Spanish) were analyzed.
-
-||| HOMEPAGE BROKEN!.
-
-||| COMMON LINK WITH (PUB. & NAME DIFFERENT) bio.tools/Diffeomorphic (IC.OUP.COM).
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'ICG OASS'""" ;
-    sc:featureList edam:operation_2421,
-        edam:operation_2422 ;
-    sc:name "ICG" ;
-    sc:url "http://ic.oup.com" .
-
 <https://bio.tools/ICGRM> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2885,
@@ -35632,48 +28433,8 @@ BACKGROUND:Genomic prediction is an advanced method for estimating genetic value
     sc:name "ICGRM" ;
     sc:url "https://github.com/mingfang618/CLGRM" .
 
-<https://bio.tools/ICG_videoangiography_FNa_videoangiography> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3067,
-        edam:topic_3334,
-        edam:topic_3382,
-        edam:topic_3421,
-        edam:topic_3794 ;
-    sc:citation <https://doi.org/10.3389/FSURG.2019.00052>,
-        "pmcid:PMC6759993",
-        "pubmed:31620443" ;
-    sc:description """Application of Fluorescein Fluorescence in Vascular Neurosurgery.
-
-Background: Fluorescein sodium (FNa) is a fluorescent drug with a long history of use for assessing retinal blood flow in ophthalmology; however, its application in vascular neurosurgery is only now gaining popularity. This review summarizes the current knowledge about using FNa videoangiography in vascular neurosurgery. Methods: We performed a literature review on the usage of FNa for fluorescent videoangiography procedures in neurosurgery. We analyzed methods of injection, dosages of FNa, visualizing platforms, and interpretation of FNa videoangiography. We also reviewed practical applications of FNa videoangiography during various vascular neurosurgeries.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'videoangiography FNa videoangiography', 'FNa videoangiography', 'ICG videoangiography FNa', 'videoangiography'""" ;
-    sc:featureList edam:operation_3435,
-        edam:operation_3552 ;
-    sc:name "ICG videoangiography FNa videoangiography" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31620443" .
-
-<https://bio.tools/ICIBM> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0091,
-        edam:topic_0203,
-        edam:topic_3063,
-        edam:topic_3303,
-        edam:topic_3474 ;
-    sc:citation <https://doi.org/10.1186/S12859-019-3240-4>,
-        "pmcid:PMC6924135",
-        "pubmed:31861973" ;
-    sc:description """The International Conference on Intelligent Biology and Medicine (ICIBM) 2019.
-
-Between June 9-11, 2019, the International Conference on Intelligent Biology and Medicine (ICIBM 2019) was held in Columbus, Ohio, USA. The conference included 12 scientific sessions, five tutorials or workshops, one poster session, four keynote talks and four eminent scholar talks that covered a wide range of topics in bioinformatics, medical informatics, systems biology and intelligent computing. Here, we describe 13 high quality research articles selected for publishing in BMC Bioinformatics.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'International Conference Intelligent Biology Medicine', 'International Conference Intelligent Biology Medicine 2019'""" ;
-    sc:name "ICIBM" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31861973" .
-
 <https://bio.tools/ICLabel> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3304,
@@ -35694,7 +28455,7 @@ Between June 9-11, 2019, the International Conference on Intelligent Biology and
     biotools:primaryContact "Luca Pion-Tonachini" .
 
 <https://bio.tools/ICU_readmissions> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3403,
         edam:topic_3474 ;
@@ -35707,7 +28468,7 @@ The code in this repository was used to produce the results of this paper (await
     sc:url "http://github.com/deepphong/icu-readmission" .
 
 <https://bio.tools/IDADE2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Web service" ;
     sc:applicationSubCategory edam:topic_3399 ;
@@ -35729,14 +28490,14 @@ The code in this repository was used to produce the results of this paper (await
 
 <https://bio.tools/IDBAc> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ] ;
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:encodingFormat "http://edamontology.org/format_3654" ;
+            sc:name "Mass spectrometry data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3621" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Library" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -35764,24 +28525,8 @@ The code in this repository was used to produce the results of this paper (await
     sc:softwareVersion "1.1.10" ;
     sc:url "https://chasemc.github.io/IDBac" .
 
-<https://bio.tools/IDDailyPearl> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3068,
-        edam:topic_3324,
-        edam:topic_3379 ;
-    sc:citation <https://doi.org/10.1093/OFID/OFZ360.2215>,
-        "pmcid:PMC6810422" ;
-    sc:description """A Twitter Tool to Enhance Literature Engagement on Busy Infectious Diseases Consult Services.
-
-AbstractBackgroundSocial media platforms enable on-demand, open-access learning which is attractive for busy clinicians and trainees. Additionally, teaching that occurs in a clinically contextualized, case-based setting in real time has the potential to be more effective than traditional didactics. We piloted a teaching tool to enhance learning and engagement with the literature for fellows on the infectious diseases (ID) consult service. MethodsDuring a clinical service rotation, ID faculty posted a brief daily teaching point on Twitter under the hashtag “#IDDailyPearl” with a link to the relevant article. Tweets were required to be related to a patient case, associated with an article, and could not include patient identifiers.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE '2537 IDDailyPearl', 'teaching', 'ConclusionOur', 'engagement'""" ;
-    sc:name "IDDailyPearl" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6810422/" .
-
 <https://bio.tools/IDDomainSpotter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0593,
         edam:topic_0736,
@@ -35802,32 +28547,8 @@ IDDomainSpotter is a sequence-based approach to assess and visualize domain orga
     sc:name "IDDomainSpotter" ;
     sc:url "http://www.bio.ku.dk/sbinlab/IDDomainSpotter" .
 
-<https://bio.tools/IDEAS> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0204,
-        edam:topic_0749,
-        edam:topic_3170,
-        edam:topic_3173,
-        edam:topic_3512 ;
-    sc:citation <https://doi.org/10.1371/JOURNAL.PCBI.1007399>,
-        "pmcid:PMC6855516",
-        "pubmed:31682602" ;
-    sc:description """Direct prediction of regulatory elements from partial data without imputation.
-
-UCSC Genome Browser trackhub definition files for IDEAS segmentation results.
-
-hg19 [http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg19&hubUrl=https://seqcode.github.io/IDEAS-trackhubs/Roadmap2018_127cell_12mark_incomplete/hub_ideas_roadmap127_2019.txt].
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'segmentation', 'imputation', 'propagates', 'regulatory'""" ;
-    sc:featureList edam:operation_0438,
-        edam:operation_3208,
-        edam:operation_3222,
-        edam:operation_3557 ;
-    sc:license "MIT" ;
-    sc:name "IDEAS" ;
-    sc:url "https://github.com/seqcode/IDEAS-trackhubs" .
-
 <https://bio.tools/IDH-wild-type> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_2269,
@@ -35844,39 +28565,16 @@ Background:In 2016, the World Health Organization reclassified the definition of
     sc:name "IDH-wild-type" ;
     sc:url "https://gcioffi.shinyapps.io/Nomogram_For_IDH_Wildtype_GBM_H_Gittleman/" .
 
-<https://bio.tools/IDH1mut_cancers> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0749,
-        edam:topic_2640,
-        edam:topic_3170,
-        edam:topic_3295,
-        edam:topic_3308 ;
-    sc:citation <https://doi.org/10.1093/NEUONC/NOY148.454>,
-        "pmcid:PMC6216793" ;
-    sc:description """GENE-28. METHYLOMES AND TRANSCRIPTOMES VARY ACROSS IDH1 MUTANT CANCERS.
-
-AbstractSince their discovery in gliomas, mutations in isocitrate dehydrogenases 1 and 2 (collectively referred to as “IDH1mut”) have been discovered in a variety of cancers, including acute myeloid leukemia (AML), melanoma, and cholangiocarcinoma. While IDH1mut promotes genomic hypermethylation in all these cancers, glioma remains the only tumor in which IDH1mut is a consistently favorable prognostic marker, for reasons that are unclear. We therefore hypothesized that the pattern of DNA methylation, the resultant transcriptomic profiles, and specific genes suppressed, would all vary among IDH1mut cancers according to tissue of origin.
-
-||| HOMEPAGE BROKEN!.
-
-||| COMMON LINK WITH (PUB. & NAME DIFFERENT) bio.tools/Diffeomorphic (IC.OUP.COM).
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'IDH1mut gliomas', 'IDH1wt cholangiocarcinoma', 'IDH1mut', 'hypermethylated IDH1mut'""" ;
-    sc:featureList edam:operation_0417,
-        edam:operation_0440,
-        edam:operation_3463 ;
-    sc:name "IDH1mut cancers" ;
-    sc:url "http://ic.oup.com" .
-
 <https://bio.tools/IDSM> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3786" ;
-            sc:name "Query script" ;
-            sc:sameAs "http://edamontology.org/data_3786" ] ;
+            sc:additionalType "http://edamontology.org/data_3786" ;
+            sc:encodingFormat "http://edamontology.org/format_3790" ;
+            sc:name "Query script" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2080" ;
-            sc:name "Database search results" ;
-            sc:sameAs "http://edamontology.org/data_2080" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2080" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Database search results" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "SPARQL endpoint",
         "Web application",
@@ -35896,19 +28594,8 @@ AbstractSince their discovery in gliomas, mutations in isocitrate dehydrogenases
     sc:url "https://idsm.elixir-czech.cz/" ;
     biotools:primaryContact <http://orcid.org/0000-0002-7038-544X> .
 
-<https://bio.tools/IDSR> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0634,
-        edam:topic_3305,
-        edam:topic_3382 ;
-    sc:citation <https://doi.org/10.11604/PAMJ.SUPP.2019.33.2.16820>,
-        "pmcid:PMC6675929",
-        "pubmed:31404272" ;
-    sc:description "> LOW CONFIDENCE! | > HOMEPAGE MISSING! | > CORRECT NAME OF TOOL COULD ALSO BE 'IDSR Liberia', 'Liberia' | The implementation of integrated disease surveillance and response in Liberia after Ebola virus disease outbreak 2015-2017 | Introduction:Although Liberia adapted the integrated diseases surveillance and response (IDSR) in 2004 as a platform for implementation of International Health Regulation (IHR (2005)), IDSR was not actively implemented until 2015. Some innovations and best practices were observed during the implementation of IDSR in Liberia after Ebola virus disease outbreak. This paper describes the different approaches used for implementation of IDSR in Liberia from 2015 to 2017. Methods:We conducted a cross-sectional study using the findings from IDSR supervisions conducted from September to November 2017 and perused the outbreaks linelists submitted by the counties to the national level from January to December 2017 and key documents available at the national level" ;
-    sc:name "IDSR" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31404272" .
-
 <https://bio.tools/IDTxl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3304,
@@ -35924,7 +28611,7 @@ AbstractSince their discovery in gliomas, mutations in isocitrate dehydrogenases
     sc:url "https://github.com/pwollstadt/IDTxl" .
 
 <https://bio.tools/IILLS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3063,
@@ -35939,35 +28626,8 @@ BACKGROUND:Viral infectious diseases are the serious threat for human health. Th
     sc:name "IILLS" ;
     sc:url "http://bioinformatics.csu.edu.cn/IILLS" .
 
-<https://bio.tools/IKAP_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0089,
-        edam:topic_2229,
-        edam:topic_3170,
-        edam:topic_3308 ;
-    sc:citation <https://doi.org/10.1093/GIGASCIENCE/GIZ121>,
-        "pmcid:PMC6771546",
-        "pubmed:31574155" ;
-    sc:description """IKAP-Identifying K mAjor cell Population groups in single-cell RNA-sequencing analysis.
-
-IKAP - Identifying K mAjor cell Population groups in single-cell RNA-seq analysis.
-
-IKAP – Identifying K mAjor cell Population groups in single-cell RNA-seq analysis.
-
-Note: IKAP will, by default, regress out the percentage of mitochondrial gene counts and total UMI counts and scale the expression matrix using Seurat ScaleData function. These two values should be save in Seurat metadata with column names 'percent.mito' and 'nUMI' respectively. If you want to regress out different confounding variables or use different column names, please save these variables in Seurat metadata and set 'confounders' (an IKAP parameter) as their column names in the Seurat metadata data frame.
-
-||| NAME EQUAL TO (PUB. DIFFERENT) bio.tools/ikap.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'IKAP-Identifying'""" ;
-    sc:featureList edam:operation_2495,
-        edam:operation_3223,
-        edam:operation_3432,
-        edam:operation_3659,
-        edam:operation_3891 ;
-    sc:name "IKAP_autogenerated" ;
-    sc:url "https://github.com/NHLBI-BCB/IKAP" .
-
 <https://bio.tools/ILMF-VH> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3174,
         edam:topic_3301,
@@ -35986,54 +28646,31 @@ Xingpeng Jiang, xpjiang@mail.ccnu.edu.cn Dan Liu, liudan@mails.ccnu.edu.cn.""" ;
     sc:name "ILMF-VH" ;
     sc:url "https://github.com/liudan111/ILMF-VH.git" .
 
-<https://bio.tools/IMAGE_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0625,
-        edam:topic_0654,
-        edam:topic_3295,
-        edam:topic_3382,
-        edam:topic_3674 ;
-    sc:citation <https://doi.org/10.1186/S13059-019-1813-1>,
-        "pmcid:PMC6813132",
-        "pubmed:31651351" ;
-    sc:description """high-powered detection of genetic effects on DNA methylation using integrated methylation QTL mapping and allele-specific analysis.
-
-Integrated Methylation QTL Mapping and Allele-Specific Analysis.
-
-Integrative Methylation Association with Genotypes.
-
-Performs mQTL (methylation quantitative-trait locus) mapping in bisulfite sequencing studies by fitting a binomial mixed model and then incorporating the allelic-specific methylation pattern. Based on Fan, Yue; Vilgalys, Tauras P.; Sun, Shiquan; Peng, Qinke; Tung, Jenny; Zhou, Xiang (2019) <doi:10.1101/615039>.
-
-We provide the detailed analysis scripts for IMAGE here.
-
-IMAGE is implemented as an open source R package for mQTL mapping in sequencing-based methylation studies.
-
-To perfrom the comparative methods, put GEMMA.
-
-||| NAME EQUAL TO (PUB. DIFFERENT) bio.tools/image""" ;
-    sc:featureList edam:operation_0282,
-        edam:operation_3186,
-        edam:operation_3196,
-        edam:operation_3443 ;
-    sc:license "GPL-2.0" ;
-    sc:name "IMAGE_autogenerated" ;
-    sc:url "https://github.com/fanyue322/IMAGE" .
-
-<https://bio.tools/IMAP_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0102,
-        edam:topic_0196,
-        edam:topic_3673 ;
-    sc:citation <https://doi.org/10.1371/JOURNAL.PONE.0221858>,
-        "pmcid:PMC6711525",
-        "pubmed:31454399" ;
-    sc:description "> NAME (IMAP) SIMILAR TO (PUB. DIFFERENT) bio.tools/imap (iMAP) | Chromosome-level genome assembler combining multiple de novo assemblies | System requirements (Tested versions) | Linux x64 (Tested in CentOS 7.5, Ubuntu 16.04 and Ubuntu 18.04) | Installing IMAP from source codes" ;
-    sc:featureList edam:operation_0523,
-        edam:operation_0524,
-        edam:operation_0525 ;
-    sc:name "IMAP_autogenerated" ;
-    sc:url "http://github.com/jkimlab/IMAP" .
+<https://bio.tools/IMDA> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workflow" ;
+    sc:applicationSubCategory edam:topic_0632,
+        edam:topic_0769,
+        edam:topic_0804,
+        edam:topic_3168,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1186/S12859-021-04535-4>,
+        "pmcid:PMC8734366",
+        "pubmed:34991455" ;
+    sc:description "The ImmunoDataAnalyzer (IMDA) pipeline provides various methods for analysing immunological next-generation sequencing (NGS) data." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3192,
+        edam:operation_3200,
+        edam:operation_3933 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Freeware" ;
+    sc:name "ImmunoDataAnalyzer" ;
+    sc:operatingSystem "Linux",
+        "Windows" ;
+    sc:url "https://bioinformatics.fh-hagenberg.at/immunoanalyzer/" .
 
 <https://bio.tools/IMG-ABC> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3172,
@@ -36052,7 +28689,7 @@ The public IMG/ABC site has limited features and tools.""" ;
     sc:url "https://img.jgi.doe.gov/abc/" .
 
 <https://bio.tools/IMGT-ONTOLOGY> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Ontology" ;
     sc:applicationSubCategory edam:topic_3930,
         edam:topic_3948 ;
@@ -36070,26 +28707,26 @@ The public IMG/ABC site has limited features and tools.""" ;
 
 <https://bio.tools/IMGT_2Dstructure-DB> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0842" ;
-            sc:name "Identifier" ;
-            sc:sameAs "http://edamontology.org/data_0842" ],
+            sc:additionalType "http://edamontology.org/data_0968" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Keyword" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2858" ;
-            sc:name "Ontology concept" ;
-            sc:sameAs "http://edamontology.org/data_2858" ],
+            sc:additionalType "http://edamontology.org/data_0842" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Identifier" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0968" ;
-            sc:name "Keyword" ;
-            sc:sameAs "http://edamontology.org/data_0968" ] ;
+            sc:additionalType "http://edamontology.org/data_2858" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Ontology concept" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2955" ;
-            sc:name "Sequence report" ;
-            sc:sameAs "http://edamontology.org/data_2955" ],
+            sc:additionalType "http://edamontology.org/data_2955" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Sequence report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Sequence alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_3930,
         edam:topic_3948 ;
@@ -36109,14 +28746,14 @@ Annotation is based on the IMGT-ONTOLOGY concepts.""" ;
 
 <https://bio.tools/IMGT_Allele-Align> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ] ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Nucleic acid sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Sequence alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0804 ;
@@ -36134,10 +28771,10 @@ Annotation is based on the IMGT-ONTOLOGY concepts.""" ;
 
 <https://bio.tools/IMGT_CloneSearch> a sc:SoftwareApplication ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1274" ;
-            sc:name "Map" ;
-            sc:sameAs "http://edamontology.org/data_1274" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1274" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Map" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0804 ;
     sc:citation "pubmed:15089751",
@@ -36155,14 +28792,14 @@ Annotation is based on the IMGT-ONTOLOGY concepts.""" ;
 
 <https://bio.tools/IMGT_Collier-de-Perles> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Protein sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Image" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0804 ;
     sc:citation "pubmed:11862387",
@@ -36182,18 +28819,17 @@ Annotation is based on the IMGT-ONTOLOGY concepts.""" ;
 
 <https://bio.tools/IMGT_DomainDisplay> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0968" ;
-            sc:name "Keyword" ;
-            sc:sameAs "http://edamontology.org/data_0968" ],
+            sc:additionalType "http://edamontology.org/data_0842" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Identifier" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0842" ;
-            sc:name "Identifier" ;
-            sc:sameAs "http://edamontology.org/data_0842" ] ;
+            sc:additionalType "http://edamontology.org/data_0968" ;
+            sc:name "Keyword" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Protein sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0804,
         edam:topic_3510,
@@ -36213,22 +28849,14 @@ Analysis is based on the IMGT-ONTOLOGY concepts.""" ;
 
 <https://bio.tools/IMGT_DomainGapAlign> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ],
-        [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3154" ;
-            sc:name "Protein alignment" ;
-            sc:sameAs "http://edamontology.org/data_3154" ],
-        [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3154" ;
-            sc:name "Protein alignment" ;
-            sc:sameAs "http://edamontology.org/data_3154" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3154" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Protein alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0804,
         edam:topic_3930,
@@ -36249,10 +28877,10 @@ Analysis is based on the IMGT-ONTOLOGY concepts.""" ;
 
 <https://bio.tools/IMGT_DomainSuperimpose> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0968" ;
-            sc:name "Keyword" ;
-            sc:sameAs "http://edamontology.org/data_0968" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0968" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Keyword" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0081 ;
     sc:citation "pubmed:25378316" ;
@@ -36268,62 +28896,34 @@ Analysis is based on the IMGT-ONTOLOGY concepts.""" ;
 
 <https://bio.tools/IMGT_GENE-DB> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2299" ;
-            sc:name "Gene name" ;
-            sc:sameAs "http://edamontology.org/data_2299" ],
-        [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0968" ;
-            sc:name "Keyword" ;
-            sc:sameAs "http://edamontology.org/data_0968" ],
-        [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2858" ;
-            sc:name "Ontology concept" ;
-            sc:sameAs "http://edamontology.org/data_2858" ],
-        [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0968" ;
-            sc:name "Keyword" ;
-            sc:sameAs "http://edamontology.org/data_0968" ],
-        [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2299" ;
-            sc:name "Gene name" ;
-            sc:sameAs "http://edamontology.org/data_2299" ],
+            sc:additionalType "http://edamontology.org/data_0842" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Identifier" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0842" ;
-            sc:name "Identifier" ;
-            sc:sameAs "http://edamontology.org/data_0842" ],
+            sc:additionalType "http://edamontology.org/data_0968" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Keyword" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2858" ;
-            sc:name "Ontology concept" ;
-            sc:sameAs "http://edamontology.org/data_2858" ],
+            sc:additionalType "http://edamontology.org/data_2299" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Gene name" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0842" ;
-            sc:name "Identifier" ;
-            sc:sameAs "http://edamontology.org/data_0842" ] ;
+            sc:additionalType "http://edamontology.org/data_2858" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Ontology concept" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0916" ;
-            sc:name "Gene report" ;
-            sc:sameAs "http://edamontology.org/data_0916" ],
+            sc:additionalType "http://edamontology.org/data_0916" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Gene report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2080" ;
-            sc:name "Database search results" ;
-            sc:sameAs "http://edamontology.org/data_2080" ],
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0916" ;
-            sc:name "Gene report" ;
-            sc:sameAs "http://edamontology.org/data_0916" ],
-        [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2080" ;
-            sc:name "Database search results" ;
-            sc:sameAs "http://edamontology.org/data_2080" ],
-        [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ],
-        [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2080" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Database search results" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0804,
@@ -36347,18 +28947,18 @@ Annotation is based on the IMGT-ONTOLOGY concepts.""" ;
 
 <https://bio.tools/IMGT_GeneFrequency> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0968" ;
-            sc:name "Keyword" ;
-            sc:sameAs "http://edamontology.org/data_0968" ],
+            sc:additionalType "http://edamontology.org/data_0842" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Identifier" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0842" ;
-            sc:name "Identifier" ;
-            sc:sameAs "http://edamontology.org/data_0842" ] ;
+            sc:additionalType "http://edamontology.org/data_0968" ;
+            sc:encodingFormat "http://edamontology.org/format_2058" ;
+            sc:name "Keyword" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0842" ;
-            sc:name "Identifier" ;
-            sc:sameAs "http://edamontology.org/data_0842" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0842" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Identifier" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0804,
         edam:topic_3053,
@@ -36380,30 +28980,18 @@ Analysis is based on the IMGT-ONTOLOGY concepts.""" ;
 
 <https://bio.tools/IMGT_GeneInfo> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0968" ;
-            sc:name "Keyword" ;
-            sc:sameAs "http://edamontology.org/data_0968" ],
-        [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0968" ;
-            sc:name "Keyword" ;
-            sc:sameAs "http://edamontology.org/data_0968" ] ;
+            sc:additionalType "http://edamontology.org/data_0968" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Keyword" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1278" ;
-            sc:name "Genetic map" ;
-            sc:sameAs "http://edamontology.org/data_1278" ],
-        [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1278" ;
-            sc:name "Genetic map" ;
-            sc:sameAs "http://edamontology.org/data_1278" ],
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Nucleic acid sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ],
-        [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1278" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Genetic map" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3930,
         edam:topic_3948 ;
     sc:citation "pubmed:14681357",
@@ -36417,10 +29005,10 @@ Analysis is based on the IMGT-ONTOLOGY concepts.""" ;
 
 <https://bio.tools/IMGT_GeneSearch> a sc:SoftwareApplication ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1274" ;
-            sc:name "Map" ;
-            sc:sameAs "http://edamontology.org/data_1274" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1274" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Map" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0804,
         edam:topic_3930,
@@ -36440,10 +29028,10 @@ Analysis is based on the IMGT-ONTOLOGY concepts.""" ;
 
 <https://bio.tools/IMGT_GeneView> a sc:SoftwareApplication ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1274" ;
-            sc:name "Map" ;
-            sc:sameAs "http://edamontology.org/data_1274" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1274" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Map" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0804,
         edam:topic_3930,
@@ -36463,22 +29051,22 @@ Analysis is based on the IMGT-ONTOLOGY concepts.""" ;
 
 <https://bio.tools/IMGT_HighV-QUEST> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ] ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Nucleic acid sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3779" ;
-            sc:name "Annotated text" ;
-            sc:sameAs "http://edamontology.org/data_3779" ],
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Sequence features" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ],
+            sc:additionalType "http://edamontology.org/data_3779" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Annotated text" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2955" ;
-            sc:name "Sequence report" ;
-            sc:sameAs "http://edamontology.org/data_2955" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2955" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Sequence report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Bioinformatics portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_3930,
@@ -36503,18 +29091,18 @@ Analysis is based on the IMGT-ONTOLOGY concepts.""" ;
 
 <https://bio.tools/IMGT_JunctionAnalysis> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ] ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:encodingFormat "http://edamontology.org/format_2200" ;
+            sc:name "Nucleic acid sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0867" ;
-            sc:name "Sequence alignment report" ;
-            sc:sameAs "http://edamontology.org/data_0867" ],
+            sc:additionalType "http://edamontology.org/data_0867" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Sequence alignment report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Sequence alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3930,
         edam:topic_3948 ;
@@ -36536,26 +29124,26 @@ Analysis is based on the IMGT-ONTOLOGY concepts.""" ;
 
 <https://bio.tools/IMGT_LIGM-DB> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0968" ;
-            sc:name "Keyword" ;
-            sc:sameAs "http://edamontology.org/data_0968" ],
+            sc:additionalType "http://edamontology.org/data_1103" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "EMBL/GenBank/DDBJ ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2858" ;
-            sc:name "Ontology concept" ;
-            sc:sameAs "http://edamontology.org/data_2858" ],
+            sc:additionalType "http://edamontology.org/data_0842" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Identifier" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1103" ;
-            sc:name "EMBL/GenBank/DDBJ ID" ;
-            sc:sameAs "http://edamontology.org/data_1103" ],
+            sc:additionalType "http://edamontology.org/data_2858" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Ontology concept" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0842" ;
-            sc:name "Identifier" ;
-            sc:sameAs "http://edamontology.org/data_0842" ] ;
+            sc:additionalType "http://edamontology.org/data_0968" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Keyword" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2080" ;
-            sc:name "Database search results" ;
-            sc:sameAs "http://edamontology.org/data_2080" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2080" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Database search results" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -36581,10 +29169,10 @@ Annotation is based on the IMGT-ONTOLOGY concepts.""" ;
 
 <https://bio.tools/IMGT_LocusView> a sc:SoftwareApplication ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2969" ;
-            sc:name "Sequence image" ;
-            sc:sameAs "http://edamontology.org/data_2969" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2969" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Sequence image" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0804 ;
     sc:citation "pubmed:15089751",
@@ -36603,14 +29191,14 @@ Display is based on the IMGT-ONTOLOGY concepts.""" ;
 
 <https://bio.tools/IMGT_PRIMER-DB> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ] ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Nucleic acid sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Nucleic acid sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_3930,
         edam:topic_3948 ;
@@ -36631,46 +29219,26 @@ Annotation is based on the IMGT-ONTOLOGY concepts.""" ;
 
 <https://bio.tools/IMGT_PhyloGene> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0968" ;
-            sc:name "Keyword" ;
-            sc:sameAs "http://edamontology.org/data_0968" ],
-        [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2858" ;
-            sc:name "Ontology concept" ;
-            sc:sameAs "http://edamontology.org/data_2858" ],
-        [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0968" ;
-            sc:name "Keyword" ;
-            sc:sameAs "http://edamontology.org/data_0968" ],
-        [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2299" ;
-            sc:name "Gene name" ;
-            sc:sameAs "http://edamontology.org/data_2299" ],
+            sc:additionalType "http://edamontology.org/data_2858" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Ontology concept" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2858" ;
-            sc:name "Ontology concept" ;
-            sc:sameAs "http://edamontology.org/data_2858" ],
+            sc:additionalType "http://edamontology.org/data_0968" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Keyword" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2299" ;
-            sc:name "Gene name" ;
-            sc:sameAs "http://edamontology.org/data_2299" ] ;
+            sc:additionalType "http://edamontology.org/data_2299" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Gene name" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2523" ;
-            sc:name "Phylogenetic data" ;
-            sc:sameAs "http://edamontology.org/data_2523" ],
+            sc:additionalType "http://edamontology.org/data_2523" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Phylogenetic data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0867" ;
-            sc:name "Sequence alignment report" ;
-            sc:sameAs "http://edamontology.org/data_0867" ],
-        [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2523" ;
-            sc:name "Phylogenetic data" ;
-            sc:sameAs "http://edamontology.org/data_2523" ],
-        [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0867" ;
-            sc:name "Sequence alignment report" ;
-            sc:sameAs "http://edamontology.org/data_0867" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0867" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Sequence alignment report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3930,
         edam:topic_3948 ;
@@ -36687,22 +29255,20 @@ Analysis is based on the IMGT-ONTOLOGY concepts.""" ;
 
 <https://bio.tools/IMGT_StatClonotype> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2955" ;
-            sc:name "Sequence report" ;
-            sc:sameAs "http://edamontology.org/data_2955" ] ;
+            sc:additionalType "http://edamontology.org/data_2955" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Sequence report" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ],
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:name "Plot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1636" ;
-            sc:name "Heat map" ;
-            sc:sameAs "http://edamontology.org/data_1636" ],
+            sc:additionalType "http://edamontology.org/data_1636" ;
+            sc:name "Heat map" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3930,
         edam:topic_3948 ;
@@ -36723,14 +29289,14 @@ Analysis is based on the IMGT-ONTOLOGY concepts.""" ;
 
 <https://bio.tools/IMGT_StructuralQuery> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0968" ;
-            sc:name "Keyword" ;
-            sc:sameAs "http://edamontology.org/data_0968" ] ;
+            sc:additionalType "http://edamontology.org/data_0968" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Keyword" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0883" ;
-            sc:name "Structure" ;
-            sc:sameAs "http://edamontology.org/data_0883" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0883" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Structure" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0804 ;
@@ -36749,14 +29315,14 @@ Analysis is based on the IMGT-ONTOLOGY concepts.""" ;
 
 <https://bio.tools/IMGT_mAb-DB> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0842" ;
-            sc:name "Identifier" ;
-            sc:sameAs "http://edamontology.org/data_0842" ] ;
+            sc:additionalType "http://edamontology.org/data_0842" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Identifier" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2080" ;
-            sc:name "Database search results" ;
-            sc:sameAs "http://edamontology.org/data_2080" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2080" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Database search results" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0804,
         edam:topic_3400,
@@ -36776,7 +29342,7 @@ IMGT/mAb-DB provides links to IMGT/2Dstructure-DB and IMGT/3Dstructure-DB.""" ;
     sc:url "http://www.imgt.org/mAb-DB/" .
 
 <https://bio.tools/IMMUNOPHARMACOLOGY> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0202,
@@ -36796,7 +29362,7 @@ The IUPHAR/BPS Guide to IMMUNOPHARMACOLOGY. Description.""" ;
     sc:url "http://www.guidetoimmunopharmacology.org" .
 
 <https://bio.tools/IMOS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0769,
@@ -36816,110 +29382,8 @@ The IUPHAR/BPS Guide to IMMUNOPHARMACOLOGY. Description.""" ;
     sc:url "https://github.com/Mosjava/IMOS" ;
     biotools:primaryContact "Hadadian Nejad Youesfi" .
 
-<https://bio.tools/IMPLEMENTATIONGPA> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0194,
-        edam:topic_0199,
-        edam:topic_3673 ;
-    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTZ377>,
-        "pmcid:PMC6612806",
-        "pubmed:31510683" ;
-    sc:description "> CORRECT NAME OF TOOL COULD ALSO BE 'GPA' (bio.tools/gpa), 'progressiveMauve' | Efficient merging of genome profile alignments | André Hennig authored Jul 17, 2019" ;
-    sc:featureList edam:operation_0295,
-        edam:operation_0300,
-        edam:operation_3182 ;
-    sc:name "IMPLEMENTATION:GPA" ;
-    sc:url "https://lambda.informatik.uni-tuebingen.de/gitlab/ahennig/GPA" .
-
-<https://bio.tools/IMPLEMENTATIONHowDe-SBT> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3170 ;
-    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTZ662>,
-        "pubmed:31504157" ;
-    sc:description "> MEDIUM CONFIDENCE! | > CORRECT NAME OF TOOL COULD ALSO BE 'HowDe-SBT' | Improved representation of sequence Bloom trees | Sequence Bloom Tree, supporting determined/how split filters | Jellyfish (Version 2.2.0 or later)" ;
-    sc:featureList edam:operation_0224 ;
-    sc:license "MIT" ;
-    sc:name "IMPLEMENTATION:HowDe-SBT" ;
-    sc:url "https://github.com/medvedevgroup/HowDeSBT" .
-
-<https://bio.tools/IMPLEMENTATIONKnot_pull> a sc:SoftwareApplication ;
-    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTZ644>,
-        "pubmed:31504154" ;
-    sc:description "> MEDIUM CONFIDENCE! | > CORRECT NAME OF TOOL COULD ALSO BE 'Knot_pull' | Knot_pull-python package for biopolymer smoothing and knot detection | Python module for knot-like structure detection in biological molecules | KnotPull - a simplifier for 3D structures | KnotPull reduces a user provided 3D structure, to simplify it, while preserving the topology of the chain. It has been successfully used for knot detection in proteins and chromatin chains" ;
-    sc:featureList edam:operation_3890 ;
-    sc:license "GPL-3.0" ;
-    sc:name "IMPLEMENTATION:Knot_pull" ;
-    sc:url "http://github.com/dzarmola/knot_pull" .
-
-<https://bio.tools/IMPLEMENTATIONMixMPLN> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0602,
-        edam:topic_3697,
-        edam:topic_3855 ;
-    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTZ370>,
-        "pmcid:PMC6612855",
-        "pubmed:31510709" ;
-    sc:description "> MEDIUM CONFIDENCE! | Learning a mixture of microbial networks using minorization-maximization | \"MixMPLN\" is a package written in R, which has two features. First feature is generating a proper synthetic sample-taxa count matrix. Second feature is receiving a sample-taxa count matrix and extracting k(number of components) different interaction networks between taxa | Following packages must be installed and loaded in R environment before using \"MixMPLN\":" ;
-    sc:featureList edam:operation_2937,
-        edam:operation_3192 ;
-    sc:name "IMPLEMENTATION:MixMPLN" ;
-    sc:url "https://github.com/sahatava/MixMPLN" .
-
-<https://bio.tools/IMPLEMENTATIONPRALINE> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0091,
-        edam:topic_0769 ;
-    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTZ572>,
-        "pubmed:31368486" ;
-    sc:description "> MEDIUM CONFIDENCE! | > COMMON LINK WITH (PUB. & NAME DIFFERENT) bio.tools/PRALINE_2 (GITHUB.COM/ibivu/PRALINE) | > CORRECT NAME OF TOOL COULD ALSO BE 'SUMMARY:PRALINE', 'PRALINE' (bio.tools/praline), 'PRALINE 2' (bio.tools/PRALINE_2) | Tailor-made multiple sequence alignments using the PRALINE 2 alignment toolkit | Next-generation PRALINE sequence alignment program | PRALINE 2, a reimplementation of the PSI-PRALINE multiple sequence alignment program | Progressive multiple sequence alignment" ;
-    sc:featureList edam:operation_0300,
-        edam:operation_0491,
-        edam:operation_0492 ;
-    sc:license "GPL-2.0" ;
-    sc:name "IMPLEMENTATION:PRALINE" ;
-    sc:url "https://github.com/ibivu/PRALINE/" .
-
-<https://bio.tools/IMPLEMENTATIONmlrMBO> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_2640,
-        edam:topic_3518 ;
-    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTZ361>,
-        "pmcid:PMC6612842",
-        "pubmed:31510644" ;
-    sc:description "> MEDIUM CONFIDENCE! | Model-based optimization of subgroup weights for survival analysis | Toolbox for Bayesian Optimization and Model-Based Optimization in R | Model-based optimization with mlr | Issues, Requests and Bug Tracker" ;
-    sc:featureList edam:operation_3659 ;
-    sc:name "IMPLEMENTATION:mlrMBO" ;
-    sc:url "http://github.com/mlr-org/mlrMBO" .
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-<https://bio.tools/IMPROV_CLASS> a sc:SoftwareApplication ;
-    sc:citation <https://doi.org/10.1093/GERONI/IGZ038.520>,
-        "pmcid:PMC6845223" ;
-    sc:description """WELL-BEING AND COMMUNITY BELONGING FOR OLDER AFRICAN AMERICANS IN LOW-INCOME HOUSING.
-
-AbstractArts-based interventions can enhance the quality of life of older adults, but community-dwelling older adults may have reduced access to such interventions. The purpose of this study was to examine whether a creative arts program can improve the overall health and well-being of older adults in low-income housing. A university social work department and community agency collaborated in establishing a professionally run theater group of older adults in two low-income housing buildings in an urban area. All residents were encouraged to participate. The study consisted of three twelve-week acting and improvisation courses, focusing on either staged reading of monologues and dialogues, co-writing a script, or staged reading of a complete play.
-
-||| HOMEPAGE BROKEN!.
-
-||| COMMON LINK WITH (PUB. & NAME DIFFERENT) bio.tools/Diffeomorphic (IC.OUP.COM)""" ;
-    sc:name "IMPROV CLASS" ;
-    sc:url "http://ic.oup.com" .
-
-<https://bio.tools/IMP_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3306,
-        edam:topic_3382,
-        edam:topic_3892 ;
-    sc:citation <https://doi.org/10.1007/978-1-4939-9608-7_15>,
-        "pubmed:31396911" ;
-    sc:description "> NAME EQUAL TO (PUB. DIFFERENT) bio.tools/imp_biomolecules, bio.tools/imp_omic, bio.tools/imp | > CORRECT NAME OF TOOL COULD ALSO BE 'PDB-Dev', 'Integrative Modeling Platform', 'integrative modeling including gathering', 'integrative modeling including' | Modeling Biological Complexes Using Integrative Modeling Platform | Scripts to assess sampling convergence and exhaustiveness" ;
-    sc:featureList edam:operation_3431 ;
-    sc:license "GPL-2.0" ;
-    sc:name "IMP_autogenerated" ;
-    sc:url "https://github.com/salilab/IMP-sampcon" .
-
-<https://bio.tools/IMR> a sc:SoftwareApplication ;
-    sc:citation <https://doi.org/10.1037/PRJ0000387>,
-        "pubmed:31478709" ;
-    sc:description "> VERY_LOW CONFIDENCE! | > HOMEPAGE MISSING! | Implementing illness management and recovery within assertive community treatment teams | OBJECTIVE:The study purpose was to assess the feasibility, advantages disadvantages, and factors that hinder or facilitate the implementation of illness management and recovery (IMR) within assertive community treatment (ACT) teams. METHOD:A qualitative study was conducted with 11 ACT teams that implemented IMR. We conducted semistructured individual interviews with 17 persons enrolled in services and 55 ACT staff in individual and focus groups. Questions were designed to assess perceptions of IMR implementation, effects of IMR, staff training considerations, and recommendations. Data were analyzed using an inductive, consensus-building, thematic analysis, which included multiple research staff reviewing interview transcripts and field notes, developing and refining a codebook, constructing data summaries, and thematic synthesis" ;
-    sc:name "IMR" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31478709" .
-
 <https://bio.tools/IMTRBM> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_3170,
@@ -36938,7 +29402,7 @@ AbstractArts-based interventions can enhance the quality of life of older adults
     biotools:primaryContact "Y. Liu" .
 
 <https://bio.tools/INDEED> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3172,
@@ -36964,7 +29428,7 @@ AbstractArts-based interventions can enhance the quality of life of older adults
         "Zhenzhi Li" .
 
 <https://bio.tools/INDRA-IPM> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0218,
@@ -36984,7 +29448,7 @@ AbstractArts-based interventions can enhance the quality of life of older adults
     biotools:primaryContact "Peter Sorger" .
 
 <https://bio.tools/INLA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_2269,
@@ -37000,7 +29464,7 @@ AbstractArts-based interventions can enhance the quality of life of older adults
     sc:url "http://www.r-inla.org" .
 
 <https://bio.tools/INSP> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -37018,7 +29482,7 @@ Nuclear localization signals (NLSs) are peptides that target proteins to the nuc
     sc:url "http://www.csbio.sjtu.edu.cn/bioinf/INSP/" .
 
 <https://bio.tools/INTERPRET_DSS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0593,
         edam:topic_3384,
@@ -37036,18 +29500,8 @@ Nuclear localization signals (NLSs) are peptides that target proteins to the nuc
     sc:url "http://gabrmn.uab.es/dss" ;
     biotools:primaryContact "Biomedical Applications of Magnetic Resonance research group" .
 
-<https://bio.tools/IOP> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3390,
-        edam:topic_3411,
-        edam:topic_3420 ;
-    sc:citation <https://doi.org/10.12688/F1000RESEARCH.20260.1> ;
-    sc:description "> LOW CONFIDENCE! | > CORRECT NAME OF TOOL COULD ALSO BE 'retracted', 'F1000Research', 'F1000Research IOP F1000Research', 'ICMJE' | Consumer perspectives on reproductive health after using the Jakpros smart mobile health application | The article titled “Consumer perspectives on reproductive health after using the Jakpros smart mobile health application: A cross-sectional, qualitative study” ([version 1; peer review: 1 not approved] F1000Research 2019, 8: 396 https: doi.org 10.12688 f1000research. 17894.1 ) has been retracted by F1000Research on the grounds of scientific misconduct. On submission to F1000Research, all manuscripts undergo plagiarism checks as standard this is detailed in our Originality policies. Upon submission, authors are also required to declare that the article is not under consideration or review by another publisher. At this stage in the publication process, our plagiarism detection software did not identify any significant duplication of text" ;
-    sc:featureList edam:operation_3431 ;
-    sc:name "IOP" ;
-    sc:url "https://iopscience.iop.org/article/10.1088/1755-1315/248/1/012038/pdf" .
-
 <https://bio.tools/IPA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3172,
@@ -37060,7 +29514,7 @@ Nuclear localization signals (NLSs) are peptides that target proteins to the nuc
     sc:url "https://github.com/francescodc87/IPA" .
 
 <https://bio.tools/IPCAPS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_2885,
@@ -37084,7 +29538,7 @@ Nuclear localization signals (NLSs) are peptides that target proteins to the nuc
     biotools:primaryContact "Kridsadakorn Chaichoompu" .
 
 <https://bio.tools/IPD_project> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0199,
@@ -37105,7 +29559,7 @@ IPD was developed in 2003 to provide a centralised system for the study of polym
     sc:url "https://www.ebi.ac.uk/ipd/" .
 
 <https://bio.tools/IPF> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3308,
@@ -37117,23 +29571,8 @@ IPD was developed in 2003 to provide a centralised system for the study of polym
     sc:name "IPF" ;
     sc:url "http://IPFCellAtlas.com" .
 
-<https://bio.tools/IPIE> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0621,
-        edam:topic_0634 ;
-    sc:citation <https://doi.org/10.1016/J.VACCINE.2019.10.028>,
-        "pubmed:31699507" ;
-    sc:description """Assessment of immunization practices in Belarus, Morocco, and Thailand.
-
-BACKGROUND:Vaccines for the control of seasonal influenza are recommended by the World Health Organization (WHO) for use in specific risk groups, but their use requires operational considerations that may challenge immunization programs. Several middle-income countries have recently implemented seasonal influenza vaccination. Early program evaluation following vaccine introduction can help ascertain positive lessons learned and areas for improvement. METHODS:An influenza vaccine post-introduction evaluation (IPIE) tool was developed jointly by WHO and the U. S. Centers for Disease Control and Prevention to provide a systematic approach to assess influenza vaccine implementation processes.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'Seasonal influenza vaccination middle-income countries', 'influenza vaccination', 'seasonal influenza', 'HWs'""" ;
-    sc:name "IPIE" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31699507" .
-
 <https://bio.tools/IRESpy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_3474,
@@ -37149,7 +29588,7 @@ BACKGROUND:Vaccines for the control of seasonal influenza are recommended by the
     sc:url "https://irespy.shinyapps.io/IRESpy/" .
 
 <https://bio.tools/IRNdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_0804,
@@ -37164,28 +29603,8 @@ BACKGROUND:Vaccines for the control of seasonal influenza are recommended by the
     sc:name "IRNdb" ;
     sc:url "http://irndb.org" .
 
-<https://bio.tools/ISAR> a sc:SoftwareApplication ;
-    sc:additionalType "Command-line tool" ;
-    sc:applicationSubCategory edam:topic_3179,
-        edam:topic_3382,
-        edam:topic_3393 ;
-    sc:citation <https://doi.org/10.1186/S41181-019-0077-0>,
-        "pmcid:PMC6751239",
-        "pubmed:31659546" ;
-    sc:description """new synthesis platform for radiopharmaceutical production.
-
-BACKGROUND:PET radiopharmaceutical development and the implementation of a production method on a synthesis module is a complex and time-intensive task since new synthesis methods must be adapted to the confines of the synthesis platform in use. Commonly utilized single fluid bus architectures put multiple constraints on synthesis planning and execution, while conventional microfluidic solutions are limited by compatibility at the macro-to-micro interface. In this work we introduce the ISAR synthesis platform and custom-tailored fluid paths leveraging up to 70 individually addressable valves on a chip-based consumable.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'development', 'implementation ISAR', '13NNH3', 'consumable', 'radiopharmaceutical'""" ;
-    sc:featureList edam:operation_2428,
-        edam:operation_3435 ;
-    sc:name "ISAR" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31659546" .
-
 <https://bio.tools/ISETBIO> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_2259,
         edam:topic_3382,
@@ -37206,7 +29625,7 @@ BACKGROUND:PET radiopharmaceutical development and the implementation of a produ
     biotools:primaryContact <https://orcid.org/0000-0002-4972-5307> .
 
 <https://bio.tools/ISEtools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2269,
@@ -37228,7 +29647,7 @@ Characterisation and calibration of single or multiple Ion Selective Electrodes
     sc:url "https://CRAN.R-project.org/package=ISEtools" .
 
 <https://bio.tools/ISIMA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3382,
@@ -37244,7 +29663,7 @@ Phase-contrast micrographs are often used for confirmation of proliferation and
     sc:url "https://www.ilastik.org/download.html" .
 
 <https://bio.tools/ISeeU> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3403,
@@ -37259,7 +29678,7 @@ Phase-contrast micrographs are often used for confirmation of proliferation and
     sc:url "https://github.com/williamcaicedo/ISeeU" .
 
 <https://bio.tools/IWEPoissonPaper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0749,
@@ -37278,54 +29697,8 @@ Phase-contrast micrographs are often used for confirmation of proliferation and
     sc:url "https://github.com//statgenlmu//IWEPoissonPaper" ;
     biotools:primaryContact "Dirk Metzler" .
 
-<https://bio.tools/Ideonella_azotifigens_DSMZ21438T> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0196,
-        edam:topic_0769,
-        edam:topic_3895 ;
-    sc:citation <https://doi.org/10.20944/PREPRINTS201910.0250.V1> ;
-    sc:description """Elucidation of the Draft Genome Sequence of <em>Ideonella azotifigens</em> DSMZ21438 A Novel Aerobic Diazotroph of the Betaproteobacteria Isolated from Grass Rhizosphere Soil.
-
-Code for quality control, trimming, assembly, and annotation of Illumina sequencing data from Ideonella azotifigens DSMZ21438.
-
-The draft genome sequence for type strain Ideonella azotifigens DSMZ21438, a novel aerobic diazotroph of the Betaproteobacteria isolated from grass rhizosphere soil.
-
-Manuscript is currently in process.
-
-This is the code and data for this article.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'azotifigens DSMZ21438T', 'DSMZ21438', 'azotifigens', 'DSMZ21438T'""" ;
-    sc:featureList edam:operation_0310,
-        edam:operation_3192,
-        edam:operation_3218 ;
-    sc:name "Ideonella azotifigens DSMZ21438T" ;
-    sc:url "http://www.github.com/friesenlab/ideonella-azotifigens_DSMZ21438" .
-
-<https://bio.tools/IgE-antibody_binding> a sc:SoftwareApplication ;
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-        edam:topic_3324,
-        edam:topic_3360,
-        edam:topic_3400,
-        edam:topic_3421 ;
-    sc:citation <https://doi.org/10.3389/FIMMU.2019.02676>,
-        "pmcid:PMC6877653",
-        "pubmed:31803189" ;
-    sc:description """Conservation Analysis of B-Cell Allergen Epitopes to Predict Clinical Cross-Reactivity Between Shellfish and Inhalant Invertebrate Allergens.
-
-Free epitope database and prediction resource.
-
-Free resource for searching and exporting immune epitopes. Includes more than 95% of all published infectious disease, allergy, autoimmune, and transplant epitope data.
-
-||| COMMON LINK WITH (PUB. & NAME DIFFERENT) bio.tools/ImmunomeBrowser (IEDB.ORG), bio.tools/iedb-3d (IEDB.ORG), bio.tools/tepitool (IEDB.ORG).
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'Immune Epitope Database', 'allergen', 'cross-reactivity shellfish allergens', 'IgE cross-reactivity shellfish allergens'""" ;
-    sc:featureList edam:operation_0252,
-        edam:operation_0416,
-        edam:operation_2421 ;
-    sc:name "IgE-antibody binding" ;
-    sc:url "http://www.iedb.org/" .
-
 <https://bio.tools/IgM> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0154,
@@ -37349,7 +29722,7 @@ comparison between IgM reactivity with different peptide libraries.""" ;
     sc:url "https://github.com/ansts/IgMimoPap1" .
 
 <https://bio.tools/Illustrate> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0081,
@@ -37364,7 +29737,7 @@ comparison between IgM reactivity with different peptide libraries.""" ;
     sc:url "https://github.com/ccsb-scripps/Illustrate" .
 
 <https://bio.tools/ImJoy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3303,
         edam:topic_3382,
@@ -37381,7 +29754,7 @@ ImJoy -- Deep Learning Made Easy!""" ;
     sc:url "https://imjoy.io" .
 
 <https://bio.tools/ImPLoc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0140,
@@ -37402,7 +29775,7 @@ A deep learning model for protein subcellular localization based on immunohistoc
     sc:url "https://github.com/yl2019lw/ImPloc" .
 
 <https://bio.tools/ImSpectR> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2830,
         edam:topic_3170,
@@ -37426,14 +29799,19 @@ We also used ImSpectR to score CDR3 data from human TCR sequencing data sequence
 
 <https://bio.tools/ImaGEO> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3112" ;
-            sc:name "Gene expression matrix" ;
-            sc:sameAs "http://edamontology.org/data_3112" ] ;
+            sc:additionalType "http://edamontology.org/data_3112" ;
+            sc:encodingFormat "http://edamontology.org/format_1964" ;
+            sc:name "Gene expression matrix" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1147" ;
+            sc:name "GEO accession number" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3112" ;
-            sc:name "Gene expression matrix" ;
-            sc:sameAs "http://edamontology.org/data_3112" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1636" ;
+            sc:name "Heat map" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_3112" ;
+            sc:name "Gene expression matrix" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_3308 ;
@@ -37442,19 +29820,20 @@ We also used ImSpectR to score CDR3 data from human TCR sequencing data sequence
         "pubmed:30137226" ;
     sc:description "ImaGEO is a web tool for gene expression Meta-Analysis that implements a complete and comprehensive meta-analysis workflow starting from Gene Expression Omnibus (GEO) dataset identifiers. The application integrates GEO datasets, applies different meta-analysis techniques and provides functional analysis results in an easy-to-use environment. ImaGEO is a powerful and useful resource that allows researchers to integrate and perform meta-analysis of GEO datasets to lead robust findings for biomarker discovery studies." ;
     sc:featureList edam:operation_0531,
-        edam:operation_0533,
-        edam:operation_3435 ;
+        edam:operation_3223,
+        edam:operation_3435,
+        edam:operation_3436 ;
     sc:isAccessibleForFree true ;
     sc:license "GPL-2.0" ;
     sc:name "ImaGEO" ;
     sc:operatingSystem "Linux",
         "Mac",
         "Windows" ;
-    sc:url "http://bioinfo.genyo.es/imageo/" ;
+    sc:url "https://imageo.genyo.es" ;
     biotools:primaryContact <https://orcid.org/0000-0002-6173-7255> .
 
 <https://bio.tools/ImaGene> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0199,
@@ -37475,7 +29854,7 @@ ImaGene implements a supervised machine learning algorithm to predict natural se
     sc:url "https://github.com/mfumagalli/ImaGene" .
 
 <https://bio.tools/ImageDataExtractor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3068,
@@ -37497,7 +29876,7 @@ Identify regions corresponding to individual particles""" ;
     sc:url "http://www.imagedataextractor.org" .
 
 <https://bio.tools/Imager-4D> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3444,
         edam:topic_3452 ;
@@ -37508,7 +29887,7 @@ Identify regions corresponding to individual particles""" ;
     sc:url "https://jeffreyleal.wixsite.com/jleal" .
 
 <https://bio.tools/ImaginR> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3382,
@@ -37529,7 +29908,7 @@ Identify regions corresponding to individual particles""" ;
     biotools:primaryContact "Chin-Long Ky" .
 
 <https://bio.tools/ImmClass2019> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3308,
@@ -37550,7 +29929,7 @@ Identify regions corresponding to individual particles""" ;
     biotools:primaryContact "David J. Klinke" .
 
 <https://bio.tools/ImmPort> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0804 ;
@@ -37571,7 +29950,7 @@ Identify regions corresponding to individual particles""" ;
     sc:url "https://www.immport.org" .
 
 <https://bio.tools/Immcantation> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_2830,
@@ -37589,7 +29968,7 @@ Free document hosting provided by Read the Docs""" ;
     sc:url "http://www.immcantation.org" .
 
 <https://bio.tools/ImmuCellAI> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0804,
         edam:topic_2269,
@@ -37608,7 +29987,7 @@ Any comments and suggestions, please contact us""" ;
     sc:url "http://bioinfo.life.hust.edu.cn/ImmuCellAI" .
 
 <https://bio.tools/ImmuneRegulation> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0749,
@@ -37632,7 +30011,7 @@ Any comments and suggestions, please contact us""" ;
     biotools:primaryContact <https://orcid.org/0000-0002-7364-2202> .
 
 <https://bio.tools/ImmuneScape> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2275,
         edam:topic_2830 ;
@@ -37646,7 +30025,7 @@ Any comments and suggestions, please contact us""" ;
     sc:url "https://sysimm.org/immune-scape/" .
 
 <https://bio.tools/ImmunomeBrowser> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0154,
@@ -37666,20 +30045,8 @@ Any comments and suggestions, please contact us""" ;
     sc:url "http://tools.iedb.org/immunomebrowser/" ;
     biotools:primaryContact "Sandeep Kumar Dhanda" .
 
-<https://bio.tools/Immunopaedia> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0749,
-        edam:topic_0804,
-        edam:topic_3400 ;
-    sc:citation <https://doi.org/10.3389/FIMMU.2019.02012>,
-        "pmcid:PMC6724660",
-        "pubmed:31555265" ;
-    sc:description "> LOW CONFIDENCE! | > COMMON LINK WITH (PUB. & NAME DIFFERENT) bio.tools/krisp (ORG.ZA) | > CORRECT NAME OF TOOL COULD ALSO BE 'IUIS', 'IUIS-EDU' | Immunology Education Without Borders | Advancing Global Immunology Education | EARN CPD POINTS ON OUR AWARD WINNING SITE AND LEARN IMMUNOLOGY" ;
-    sc:featureList edam:operation_0560 ;
-    sc:name "Immunopaedia" ;
-    sc:url "https://www.immunopaedia.org.za/" .
-
 <https://bio.tools/ImpRes> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_3376,
@@ -37693,7 +30060,7 @@ Any comments and suggestions, please contact us""" ;
     sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31412887" .
 
 <https://bio.tools/Impact_framework> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3300,
@@ -37716,7 +30083,7 @@ Any comments and suggestions, please contact us""" ;
     biotools:primaryContact "Laboratory for Metabolic Systems Engineering" .
 
 <https://bio.tools/ImputeDistances> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0194,
         edam:topic_3293,
@@ -37730,7 +30097,7 @@ Any comments and suggestions, please contact us""" ;
     sc:url "https://github.com/Ananya-Bhattacharjee/ImputeDistances" .
 
 <https://bio.tools/Imread-life-science-image-file-formats> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -37747,7 +30114,7 @@ Any comments and suggestions, please contact us""" ;
     biotools:primaryContact "Christoph Moehl" .
 
 <https://bio.tools/ImtRDB> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0157,
@@ -37770,84 +30137,23 @@ Any comments and suggestions, please contact us""" ;
     biotools:primaryContact "Konstantin Gunbin",
         "Viktor Shamansky" .
 
-<https://bio.tools/In3-x_Se4> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_2229,
-        edam:topic_3318 ;
-    sc:citation <https://doi.org/10.1021/ACSOMEGA.9B02210>,
-        "pmcid:PMC6822117",
-        "pubmed:31681882" ;
-    sc:description """Electronic Structure of In3-x Se4 Electron Transport Layer for Chalcogenide/p-Si Heterojunction Solar Cells.
-
-In this article, we perform density functional theory calculation to investigate the electronic and optical properties of newly reported In3-x Se4 compound using CAmbridge Serial Total Energy Package (CASTEP). Structural parameters obtained from the calculations agree well with the available experimental data, indicating their stability. In the band structure of In3-x Se4 (x = 0, 0.11, and, 0.22), the Fermi level (E F) crossed over several bands in the conduction bands, which is an indication of the n-type metal-like behavior of In3-x Se4 compounds. On the other hand, the band structure of In3-x Se4 (x = 1 3) exhibits semiconducting nature with a band gap of ∼0.2 eV.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'In3-x Se4 p-Si solar', 'In3-x Se4 p-Si', 'In3-x Se4 p-Si heterojunction solar', 'In3-x Se4 p-Si heterojunction'""" ;
-    sc:name "In3-x Se4" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31681882" .
-
-<https://bio.tools/InSTIL> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0610,
-        edam:topic_0625,
-        edam:topic_3360,
-        edam:topic_3419,
-        edam:topic_3474 ;
-    sc:citation <https://doi.org/10.2196/16399>,
-        "pmcid:PMC6868504",
-        "pubmed:31692450" ;
-    sc:description """A Scalable and Governance-Aware Platform for Universal, Smartphone-Based Digital Phenotyping for Research and Clinical Applications.
-
-In this viewpoint we describe the architecture of, and design rationale for, a new software platform designed to support the conduct of digital phenotyping research studies. These studies seek to collect passive and active sensor signals from participants' smartphones for the purposes of modelling and predicting health outcomes, with a specific focus on mental health. We also highlight features of the current research landscape that recommend the coordinated development of such platforms, including the significant technical and resource costs of development, and we identify specific considerations relevant to the design of platforms for digital phenotyping.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'Intelligent Sensing Inform Learn'""" ;
-    sc:featureList edam:operation_3283,
-        edam:operation_3436 ;
-    sc:name "InSTIL" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31692450" .
-
-<https://bio.tools/InSituAnalyze> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3068,
-        edam:topic_3382,
-        edam:topic_3473 ;
-    sc:citation <https://doi.org/10.1021/ACS.ANALCHEM.9B03374>,
-        "pubmed:31794662" ;
-    sc:description """A Python Framework for Multi-Components Synchronous Analysis of Spectral Imaging.
-
-Spectral imaging is of visualization, high precision, and high sensitivity, and suitable for analyzing the spatial distribution of complex materials. While providing rich and detailed information, it makes higher demands on feature extraction and information mining of high-dimensional data. For the convenience of further utilization, our research team has developed a python framework for the multi-component synchronous analysis of spectral imaging based on characteristic band method and fast-NNLS algorithm, helping to handle spectrum data from complex samples and gaining semi-quantitative information of the sample on the scale of pixel based on target components.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'fast-NNLS', 'multi-space', 'Multi-Components'""" ;
-    sc:featureList edam:operation_0337,
-        edam:operation_3214,
-        edam:operation_3443 ;
-    sc:name "InSituAnalyze" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31794662" .
-
 <https://bio.tools/IndigoMine> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2353" ;
-            sc:name "Ontology data" ;
-            sc:sameAs "http://edamontology.org/data_2353" ],
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:name "Sequence features" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ] ;
+            sc:additionalType "http://edamontology.org/data_2353" ;
+            sc:name "Ontology data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3753" ;
-            sc:name "Over-representation data" ;
-            sc:sameAs "http://edamontology.org/data_3753" ],
+            sc:additionalType "http://edamontology.org/data_3753" ;
+            sc:name "Over-representation data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3786" ;
-            sc:name "Query script" ;
-            sc:sameAs "http://edamontology.org/data_3786" ],
+            sc:additionalType "http://edamontology.org/data_3786" ;
+            sc:name "Query script" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:name "Sequence features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application",
         "Web service" ;
@@ -37871,7 +30177,7 @@ Spectral imaging is of visualization, high precision, and high sensitivity, and
     sc:url "http://www.cbrc.kaust.edu.sa/indigo" .
 
 <https://bio.tools/InferAMP> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_2885,
@@ -37886,18 +30192,18 @@ Spectral imaging is of visualization, high precision, and high sensitivity, and
 
 <https://bio.tools/InfernoRDN> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ] ;
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_3620" ;
+            sc:name "Peptide identification" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ],
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Expression data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3603" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_2269,
@@ -37917,7 +30223,7 @@ Spectral imaging is of visualization, high precision, and high sensitivity, and
     sc:url "https://omics.pnl.gov/software/infernordn" .
 
 <https://bio.tools/InfiniumPurify-R> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3295,
@@ -37937,29 +30243,8 @@ R package for DNA methylation analysis The proposition of cancer cells in a tumo
     sc:name "InfiniumPurify-R" ;
     sc:url "https://github.com/Xiaoqizheng/InfiniumPurify" .
 
-<https://bio.tools/InfiniumPurify_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0654,
-        edam:topic_3295,
-        edam:topic_3360,
-        edam:topic_3512,
-        edam:topic_3518 ;
-    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTZ885>,
-        "pubmed:31769783" ;
-    sc:description """Detection of differentially methylated CpG sites between tumor samples with uneven tumor purities.
-
-R package for DNA methylation analysis.
-
-R package for DNA methylation analysis The proposition of cancer cells in a tumor sample, named as tumor purity, is an intrinsic factor of tumor samples and has potentially great influence in variety of analyses including differential methylation, subclonal deconvolution and subtype clustering. InfiniumPurify is an integrated R pa ckage for est imatin g and accoun ting for tum or puri ty based on DNA methylation Infinium 450 k array data. InfiniumPurify has three main functions getPurity, InfiniumDMC and InfiniumClust, which could infer tumor purity, differential methylation analysis and tumor sample c luster accounting for estimated or user-provided tumor purities, respectively. The InfiniumPurify package provides a comprehensive analysis of tumor purity in cancer methylation research.
-
-||| NAME EQUAL TO (PUB. DIFFERENT) bio.tools/infiniumpurify""" ;
-    sc:featureList edam:operation_3204,
-        edam:operation_3435,
-        edam:operation_3629 ;
-    sc:name "InfiniumPurify_autogenerated" ;
-    sc:url "https://github.com/Xiaoqizheng/InfiniumPurify" .
-
 <https://bio.tools/InfoMating> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0625,
@@ -37977,30 +30262,8 @@ Relying on the informational partition of the non-random mating effects, and by
     sc:name "InfoMating" ;
     sc:url "http://acraaj.webs6.uvigo.es/InfoMating/Infomating.htm" .
 
-<https://bio.tools/Ingenuity> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0659,
-        edam:topic_0749,
-        edam:topic_0804,
-        edam:topic_2640,
-        edam:topic_3673 ;
-    sc:citation <https://doi.org/10.1101/2019.12.12.19014324> ;
-    sc:description """Identification of Familial Hodgkin Lymphoma Predisposing Genes Using Whole Genome Sequencing.
-
-QIAGEN Bioinformatics software solutions and curated knowledge databases help you transform your raw NGS data into relevant, actionable findings.
-
-Our website uses cookies. Cookies are text files that are stored in the internet browser or the internet browser on the user's computer system. When a user visits a website, a cookie may be stored on the user's operating system. This cookie contains a characteristic string that allows the browser to be uniquely identified when the website is reopened. We use cookies to make our website more user-friendly. Some elements of our website require that the calling browser be identified even after a page break.
-
-Use necessary cookies only Allow all cookies Show details.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'FCVPPv2', 'HL', 'predisposing', '113654'""" ;
-    sc:featureList edam:operation_3211,
-        edam:operation_3225,
-        edam:operation_3226 ;
-    sc:name "Ingenuity" ;
-    sc:url "http://www.qiagen.com/ingenuity" .
-
 <https://bio.tools/InsectBase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0659,
@@ -38020,7 +30283,7 @@ Use necessary cookies only Allow all cookies Show details.
     sc:url "http://www.insect-genome.com/" .
 
 <https://bio.tools/IntMTQ> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2640,
@@ -38044,7 +30307,7 @@ We provide the source code of paper Platform-integrated mRNA Isoform Quantificat
     sc:url "https://github.com/CompbioLabUcf/IntMTQ" .
 
 <https://bio.tools/Intelli-NGS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3168,
@@ -38060,7 +30323,7 @@ Intelli-NGS:Intelligent NGS, a deep neural network-based artificial intelligence
     sc:url "https://www.github.com/aditya-88/intelli-ngs" .
 
 <https://bio.tools/InterPep2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0128,
@@ -38080,7 +30343,7 @@ Abstract Motivation Interactions between proteins and peptides or peptide-like i
     sc:url "http://wallnerlab.org/InterPep" .
 
 <https://bio.tools/InterSpin> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0593,
@@ -38096,7 +30359,7 @@ Abstract Motivation Interactions between proteins and peptides or peptide-like i
     sc:url "http://dmar.riken.jp/interspin/" .
 
 <https://bio.tools/InterVA-5> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3063,
         edam:topic_3305,
@@ -38123,7 +30386,7 @@ InterVA is a suite of computer models to facilitate interpreting VAs, and the la
     sc:url "http://www.interva.net" .
 
 <https://bio.tools/InteractionTransformer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3384,
@@ -38145,31 +30408,8 @@ What our package does not do: extract transformations in the data to add them to
     sc:softwareHelp <https://github.com/jlevy44/InteractionTransformer/wiki> ;
     sc:url "https://github.com/jlevy44/InteractionTransformer" .
 
-<https://bio.tools/Introduction_Genomic_Analysis_Workshop> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0622,
-        edam:topic_3070,
-        edam:topic_3170,
-        edam:topic_3316,
-        edam:topic_3676 ;
-    sc:citation <https://doi.org/10.12688/F1000RESEARCH.19320.1>,
-        "pmcid:PMC6774052",
-        "pubmed:31602299" ;
-    sc:description """A catalyst for engaging life-science researchers in high throughput analysis.
-
-Introduction to Genomic Analysis Workshop Series.
-
-A workshop series for Canadian researchers utilizing Compute Canada resources.
-
-Introduction To Genomic Analysis.
-
-View on GitHub Download .zip Download .tar.gz""" ;
-    sc:featureList edam:operation_3227,
-        edam:operation_3229 ;
-    sc:name "Introduction Genomic Analysis Workshop" ;
-    sc:url "https://phillip-a-richmond.github.io/Introduction-to-Genomic-Analysis/" .
-
 <https://bio.tools/IoT> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3068,
@@ -38210,34 +30450,8 @@ IoT-EPI is a European Initiative for IoT platform development.""" ;
     sc:name "IoT" ;
     sc:url "https://iot-epi.eu" .
 
-<https://bio.tools/IoT_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0605,
-        edam:topic_3068,
-        edam:topic_3318 ;
-    sc:citation <https://doi.org/10.3390/S19214707>,
-        <https://doi.org/10.3390/S19214798>,
-        "pmcid:PMC6864587",
-        "pmcid:PMC6864804",
-        "pubmed:31671918",
-        "pubmed:31690012" ;
-    sc:description """MicroServices Suite for Smart City Applications.
-
-Design and Implementation of a Trust Information Management Platform for Social Internet of Things Environments.
-
-This domain has been registered for a customer by nicsell.
-
-This domain vital-iot.eu was registered successfully by nicsell due to a customer order and will be moved soon.
-
-This domain has been successfully registered by nicsell.com for our customer. Unfortunately, it is no longer available for you.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'Snap4City', 'trust', 'social IoT', 'TIMP', 'IoT businesses'""" ;
-    sc:featureList edam:operation_3435,
-        edam:operation_3760 ;
-    sc:name "IoT_autogenerated" ;
-    sc:url "http://vital-iot.eu/project" .
-
 <https://bio.tools/IonSpattern> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3172,
@@ -38252,7 +30466,7 @@ This domain has been successfully registered by nicsell.com for our customer. Un
     sc:url "https://github.com/Vitek-Lab/IonSpattern" .
 
 <https://bio.tools/IsoCor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application",
         "Library" ;
@@ -38272,7 +30486,7 @@ This domain has been successfully registered by nicsell.com for our customer. Un
     sc:url "https://github.com/MetaSys-LISBP/IsoCor" .
 
 <https://bio.tools/IsoPOPd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0610,
@@ -38294,14 +30508,14 @@ Hanley B, Connelly P, & Dennis B. 2019. IsoPOPd: Interactive software to underst
 
 <https://bio.tools/IsobariQ> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ] ;
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_3713" ;
+            sc:name "Peptide identification" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Expression data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_2269,
@@ -38322,30 +30536,18 @@ Hanley B, Connelly P, & Dennis B. 2019. IsoPOPd: Interactive software to underst
 
 <https://bio.tools/Isodyn> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ],
-        [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrum" ;
-            sc:sameAs "http://edamontology.org/data_0943" ],
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+            sc:encodingFormat "http://edamontology.org/format_3835" ;
+            sc:name "Mass spectrometry data" ],
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-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrum" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3835" ;
+            sc:name "Mass spectrum" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrum" ;
-            sc:sameAs "http://edamontology.org/data_0943" ],
-        [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrum" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3835" ;
+            sc:name "Mass spectrum" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3955 ;
     sc:citation <https://doi.org/10.1007/978-1-0716-0159-4_12>,
@@ -38364,22 +30566,14 @@ Hanley B, Connelly P, & Dennis B. 2019. IsoPOPd: Interactive software to underst
 
 <https://bio.tools/Isoform> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ],
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-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ] ;
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:encodingFormat "http://edamontology.org/format_3835" ;
+            sc:name "Mass spectrometry data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ],
-        [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:encodingFormat "http://edamontology.org/format_3835" ;
+            sc:name "Mass spectrometry data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3172,
         edam:topic_3955 ;
@@ -38395,7 +30589,7 @@ Hanley B, Connelly P, & Dennis B. 2019. IsoPOPd: Interactive software to underst
     sc:url "https://github.com/seliv55/ramidcor" .
 
 <https://bio.tools/IsomiR_Find> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_2885,
@@ -38411,7 +30605,7 @@ Hanley B, Connelly P, & Dennis B. 2019. IsoPOPd: Interactive software to underst
     sc:url "https://github.com/wangying0128/IsomiR_Find" .
 
 <https://bio.tools/JACKS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0659 ;
     sc:citation <https://doi.org/10.1101/gr.238923.118>,
@@ -38429,7 +30623,7 @@ Hanley B, Connelly P, & Dennis B. 2019. IsoPOPd: Interactive software to underst
     biotools:primaryContact "F. Allen" .
 
 <https://bio.tools/JACOBI4> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0160,
@@ -38448,7 +30642,7 @@ JACOBI4 является проектом, разработанным для а
     sc:url "https://jacobi4.ru/" .
 
 <https://bio.tools/JAL> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application",
         "Web service" ;
@@ -38473,7 +30667,7 @@ JACOBI4 является проектом, разработанным для а
         "Minh N. Nguyen" .
 
 <https://bio.tools/JAMP> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0621,
@@ -38500,53 +30694,8 @@ JAMP is a modular metabarcoding pipeline, integrating different functions from U
     sc:name "JAMP" ;
     sc:url "https://github.com/VascoElbrecht/JAMP" .
 
-<https://bio.tools/JCDB> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0102,
-        edam:topic_0780,
-        edam:topic_3170,
-        edam:topic_3308,
-        edam:topic_3512 ;
-    sc:citation <https://doi.org/10.1186/S12864-019-6356-Z>,
-        "pmcid:PMC6929279",
-        "pubmed:31874631" ;
-    sc:description """a comprehensive knowledge base for Jatropha curcas.
-
-JCDB: an integrated database of gene annotation, expression profiling, and interaction network in the biofuel plant Jatropha curcas.
-
-In recent years, there have emerged a mass of high-throughput transcriptome sequencing of J. curcas.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'CONCLUSIONS:JCDB'""" ;
-    sc:featureList edam:operation_2421,
-        edam:operation_2495,
-        edam:operation_3216 ;
-    sc:name "JCDB" ;
-    sc:url "http://jcdb.xtbg.ac.cn" .
-
-<https://bio.tools/JMIR> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3063,
-        edam:topic_3068,
-        edam:topic_3305,
-        edam:topic_3379,
-        edam:topic_3419 ;
-    sc:citation <https://doi.org/10.2196/10477>,
-        "pubmed:31855190" ;
-    sc:description """Trends and Visibility of "Digital Health" as a Keyword in Articles by JMIR Publications in the New Millennium.
-
-Journal of Medical Internet Research.
-
-Journal of Medical Internet Research - International Scientific Journal for Medical Research, Information and Communication on the Internet.
-
-Due to necessary scheduled maintenance, the JMIR Publications website will be unavailable from Monday, March 11, 2019 at 4:00 PM to 4:30 PM EST . We apologize in advance for any inconvenience this may cause you.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'JMIR Publications', 'bibliographic-bibliometric'""" ;
-    sc:featureList edam:operation_0305,
-        edam:operation_2422,
-        edam:operation_3778 ;
-    sc:name "JMIR" ;
-    sc:url "http://www.jmir.org" .
-
 <https://bio.tools/JOA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:citation <https://doi.org/10.1186/s12859-019-2698-4>,
@@ -38564,7 +30713,7 @@ Due to necessary scheduled maintenance, the JMIR Publications website will be un
     biotools:primaryContact "Burcak Otlu" .
 
 <https://bio.tools/JRgui> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0749,
@@ -38578,7 +30727,7 @@ Due to necessary scheduled maintenance, the JMIR Publications website will be un
     sc:url "https://github.com/curieshicy/JRgui" .
 
 <https://bio.tools/JUDI> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0769,
@@ -38595,7 +30744,7 @@ JUDI - Bioinformatics Pipeline: Just Do It.""" ;
     sc:url "https://github.com/ncbi/JUDI" .
 
 <https://bio.tools/JabberDock> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0166,
         edam:topic_0176,
@@ -38611,7 +30760,7 @@ JUDI - Bioinformatics Pipeline: Just Do It.""" ;
     sc:url "http://github.com/degiacom/JabberDock" .
 
 <https://bio.tools/Jaccard> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0610,
@@ -38634,22 +30783,22 @@ Calculate statistical significance of Jaccard/Tanimoto similarity coefficients f
 
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     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1948" ;
+            sc:name "Sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0886" ;
-            sc:name "Structure alignment" ;
-            sc:sameAs "http://edamontology.org/data_0886" ] ;
+            sc:additionalType "http://edamontology.org/data_0886" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Structure alignment" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ],
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3604" ;
+            sc:name "Plot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1948" ;
+            sc:name "Sequence alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0092 ;
@@ -38668,12 +30817,12 @@ Calculate statistical significance of Jaccard/Tanimoto similarity coefficients f
         <https://www.jalview.org/about/citation>,
         <https://www.jalview.org/about/documentation>,
         <https://www.jalview.org/faq> ;
-    sc:softwareVersion "2.11.1.5" ;
+    sc:softwareVersion "2.11.2.3" ;
     sc:url "https://www.jalview.org/" ;
     biotools:primaryContact <https://orcid.org/0000-0002-7865-7382> .
 
 <https://bio.tools/Janus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0593,
@@ -38691,7 +30840,7 @@ Calculate statistical significance of Jaccard/Tanimoto similarity coefficients f
     sc:url "https://github.com/CCQC/janus" .
 
 <https://bio.tools/Jasmine> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0659,
@@ -38708,25 +30857,8 @@ MOTIVATION:The existence of complex subpopulations of miRNA isoforms, or isomiRs
     sc:name "Jasmine" ;
     sc:url "https://bitbucket.org/bipous/jasmine/src/master/" .
 
-<https://bio.tools/Java-based> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0605,
-        edam:topic_0621,
-        edam:topic_3372,
-        edam:topic_3678 ;
-    sc:citation <https://doi.org/10.7287/PEERJ.PREPRINTS.2496V2> ;
-    sc:description """An exploratory study of the state of practice of performance testing in Java-based open source projects.
-
-The usage of open source (OS) software is nowadays wide- spread across many industries and domains. While the functional quality of OS projects is considered to be up to par with that of closed-source software, much is unknown about the quality in terms of non-functional attributes, such as performance. One challenge for OS developers is that, unlike for functional testing, there is a lack of accepted best practices for performance testing. To reveal the state of practice of performance testing in OS projects, we conduct an exploratory study on 111 Java-based OS projects from GitHub.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'tooling', 'low-friction', 'non-parameterized', 'performance'""" ;
-    sc:featureList edam:operation_2238 ;
-    sc:name "Java-based" ;
-    sc:url "https://doi.org/10.7287/PEERJ.PREPRINTS.2496V2" .
-
 <https://bio.tools/Joint_Multi-Modal_Longitudinal_Regression_Classification> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3360,
@@ -38746,26 +30878,21 @@ This repository contains the code for performing a classification and a regressi
 
 <https://bio.tools/JointvetchMine> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ],
+            sc:additionalType "http://edamontology.org/data_2353" ;
+            sc:name "Ontology data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2353" ;
-            sc:name "Ontology data" ;
-            sc:sameAs "http://edamontology.org/data_2353" ] ;
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:name "Sequence features" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3786" ;
-            sc:name "Query script" ;
-            sc:sameAs "http://edamontology.org/data_3786" ],
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:name "Sequence features" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ],
+            sc:additionalType "http://edamontology.org/data_3786" ;
+            sc:name "Query script" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3753" ;
-            sc:name "Over-representation data" ;
-            sc:sameAs "http://edamontology.org/data_3753" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3753" ;
+            sc:name "Over-representation data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application",
         "Web service" ;
@@ -38788,36 +30915,8 @@ This repository contains the code for performing a classification and a regressi
     sc:softwareVersion "2.1" ;
     sc:url "https://mines.legumeinfo.org/jointvetchmine" .
 
-<https://bio.tools/Journal_Microbiology_Biology_Education> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_2229,
-        edam:topic_3301,
-        edam:topic_3339 ;
-    sc:citation <https://doi.org/10.7287/PEERJ.PREPRINTS.349V2> ;
-    sc:description """Bacteria as “ink” for writing the initials of names on agar.
-
-Mementos encapsulate memories and serve as triggers for their recollections. By using a purple pigment producing bacterium as “ink” for writing on agar, a picture memento depicting the initials of students’ names was created to help them remember the strong friendships they fostered with their fellow course mates during their final year research projects. Besides the fun activity of “Bacterial calligraphy”, the surface patterning technique can also serve as a simple and relatively low cost tool for testing the feasibility of research ideas; for example, depositing cells in both straight and curvilinear lines on planar substrates for investigating possible interactions between different microbe species.
-
-||| HOMEPAGE BROKEN!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE '172-174', 'memento', 'Calligraphy Memento', 'calligraphy'""" ;
-    sc:featureList edam:operation_3431 ;
-    sc:name "Journal Microbiology Biology Education" ;
-    sc:url "http://jmbe.asm.org/index.php/jmbe/article/view/414" .
-
-<https://bio.tools/Jupyterhub> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0769,
-        edam:topic_3372 ;
-    sc:citation <https://doi.org/10.7287/PEERJ.PREPRINTS.2577V2> ;
-    sc:description """Jupyter notebooks in science gateways.
-
-Jupyter Notebooks empower scientists to create executable documents that include text, equations, code and figures. Notebooks are a simple way to create reproducible and shareable workflows. The Jupyter developers have also released a multi-user notebook environment: Jupyterhub. Jupyterhub provides an extensible platform for handling user authentication and spawning the Notebook application to each user. I developed a plugin for Jupyterhub to spawn notebooks on a Supercomputer and integrated the authentication with CILogon and XSEDE. Scientists can authenticate on their browser and connect to a Jupyter Notebook instance running on the computing node of a Supercomputer, in my test deployment SDSC Comet. Jupyterhub can benefit Science Gateways by providing an expressive interface to a centralized environment with many software tools pre-installed and allow scientists to access Gateway functionality via web API.
-
-||| HOMEPAGE MISSING!""" ;
-    sc:name "Jupyterhub" ;
-    sc:url "https://doi.org/10.7287/PEERJ.PREPRINTS.2577V2" .
-
 <https://bio.tools/K-TOPE> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -38838,26 +30937,8 @@ Jupyter Notebooks empower scientists to create executable documents that include
     biotools:primaryContact "Michael L. Paull",
         "Patrick S. Daugherty" .
 
-<https://bio.tools/KAM_KOR_KOR_YAK-1_YAK-1> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0637,
-        edam:topic_2269,
-        edam:topic_2885 ;
-    sc:citation <https://doi.org/10.1093/JAS/SKY404.1009>,
-        "pmcid:PMC6285183" ;
-    sc:description """PSVI-23 Genetic characteristics and differentiation of four valid subspecies of snow sheep (Ovis nivicola) based on SNP analysis.
-
-AbstractSnow sheep (Ovis nivicola) is endemic of North-East Siberia, Russia. To date, the taxonomy of this species, based primarily on morphological characteristics, is controversial. In order to clarify the taxonomy of snow sheep, modern molecular genetic approaches can be used. Here we applied Illumina Ovine 50K BeadChip to examine genetic characteristics and differentiation of four subspecies, which currently are considered as valid: Putorana (O.n.borealis) (PUT, n=7), Yakut (O.n.lydekkeri) (YAK, n=23), Koryak (O.n.koriakorum) (KOR, n=20) and Kamchatka (O.n.nivicola) (KAM, n=10).
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'KOR KOR YAK-1 YAK-1', 'KAM KOR KOR YAK-1', 'YAK-1 YAK-2 KOR', 'KOR YAK-1 YAK-1'""" ;
-    sc:featureList edam:operation_2428,
-        edam:operation_3432 ;
-    sc:name "KAM KOR KOR YAK-1 YAK-1" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6285183/" .
-
 <https://bio.tools/KASPspoon> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0625,
@@ -38878,7 +30959,7 @@ AbstractSnow sheep (Ovis nivicola) is endemic of North-East Siberia, Russia. To
     biotools:primaryContact "Dr. Shafik D. Ibrahim" .
 
 <https://bio.tools/KBCommons> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0659,
@@ -38901,7 +30982,7 @@ Advancement of next generation sequencing and high-throughput technologies has r
     sc:url "http://kbcommons.org/" .
 
 <https://bio.tools/KBbox> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0202,
         edam:topic_0602,
@@ -38913,7 +30994,7 @@ Advancement of next generation sequencing and high-throughput technologies has r
     sc:url "https://kbbox.h-its.org/" .
 
 <https://bio.tools/KDDANet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0202,
         edam:topic_0602,
@@ -38926,7 +31007,7 @@ Advancement of next generation sequencing and high-throughput technologies has r
     sc:url "https://github.com/huayu1111/KDDANet/" .
 
 <https://bio.tools/KETOS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3263,
@@ -38944,7 +31025,7 @@ BACKGROUND AND OBJECTIVE:To take full advantage of decision support, machine lea
     sc:url "https://ketos.ai/hb/home" .
 
 <https://bio.tools/KOFFI> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0821,
@@ -38965,7 +31046,7 @@ KOFFI-DB (???) is an article based database for kinetic constants of biomolecula
     sc:url "http://www.koffidb.org" .
 
 <https://bio.tools/KOREF> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
@@ -38985,7 +31066,7 @@ The first Korean Reference Genome. KOREF_S means KOREF_Single.""" ;
     sc:url "http://koref.net" .
 
 <https://bio.tools/KPDGUI> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3421 ;
     sc:citation <https://doi.org/10.1016/J.COMPBIOMED.2019.03.013>,
@@ -39003,7 +31084,7 @@ The first Korean Reference Genome. KOREF_S means KOREF_Single.""" ;
     biotools:primaryContact "Mathieu Bray" .
 
 <https://bio.tools/KPHMMER> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0602,
@@ -39021,28 +31102,8 @@ The first Korean Reference Genome. KOREF_S means KOREF_Single.""" ;
     sc:url "https://github.com/suecharo/KPHMMER" ;
     biotools:primaryContact "Hirotaka Suetake" .
 
-<https://bio.tools/KPMP> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0634,
-        edam:topic_3403,
-        edam:topic_3421,
-        edam:topic_3422,
-        edam:topic_3577 ;
-    sc:citation <https://doi.org/10.1101/828665> ;
-    sc:description """A Multimodal and Integrated Approach to Interrogate Human Kidney Biopsies with Rigor and Reproducibility.
-
-Welcome to Kidney Precision Medicine Project.
-
-The Kidney Precision Medicine Project (KPMP) is focused on finding new ways to treat acute kidney injury and chronic kidney disease. We will be obtaining kidney tissues from individuals volunteering to participate in an effort to redefine kidney disease in molecular terms and identify novel targeted therapies.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'KPMP TIS', 'TME', 'JBH', 'MTE'""" ;
-    sc:featureList edam:operation_2428,
-        edam:operation_3096,
-        edam:operation_3431 ;
-    sc:name "KPMP" ;
-    sc:url "http://www.KPMP.org" .
-
 <https://bio.tools/KRAB_ZNF_explorer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2640,
@@ -39062,7 +31123,7 @@ The Kidney Precision Medicine Project (KPMP) is focused on finding new ways to t
     biotools:primaryContact "Urszula Oleksiewicz" .
 
 <https://bio.tools/KRASi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0602,
@@ -39078,7 +31139,7 @@ The Kidney Precision Medicine Project (KPMP) is focused on finding new ways to t
     sc:url "https://manciaslab.shinyapps.io/KRASi/" .
 
 <https://bio.tools/KSEA_App> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
@@ -39101,84 +31162,8 @@ The Kidney Precision Medicine Project (KPMP) is focused on finding new ways to t
     biotools:primaryContact "Danica D. Wiredja",
         "Mark R. Chance" .
 
-<https://bio.tools/Kalign_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0080,
-        edam:topic_0099,
-        edam:topic_3168 ;
-    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTZ795>,
-        "pubmed:31665271" ;
-    sc:description """multiple sequence alignment of large data sets.
-
-A fast multiple sequence alignment program.
-
-Kalign is a fast multiple sequence alignment program for biological sequences.
-
-Kalign expects the input to be a set of unaligned sequences in fasta format or aligned sequences in aligned fasta, MSF or clustal format. Kalign automatically detects whether the input sequences are protein, RNA or DNA.
-
-||| NAME EQUAL TO (PUB. DIFFERENT) bio.tools/kalign.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'RESULTS:Kalign', 'MOTIVATION:Kalign', 'Kalign 3'""" ;
-    sc:featureList edam:operation_0335,
-        edam:operation_0491,
-        edam:operation_0492 ;
-    sc:license "GPL-3.0" ;
-    sc:name "Kalign_autogenerated" ;
-    sc:url "https://github.com/timolassmann/kalign" .
-
-<https://bio.tools/Kankanet> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3302,
-        edam:topic_3382,
-        edam:topic_3474 ;
-    sc:citation <https://doi.org/10.1371/JOURNAL.PNTD.0007577>,
-        "pmcid:PMC6695198",
-        "pubmed:31381573" ;
-    sc:description "> MEDIUM CONFIDENCE! | > HOMEPAGE MISSING! | An artificial neural network-based object detection smartphone application and mobile microscope as a point-of-care diagnostic aid for soil-transmitted helminthiases | BACKGROUND:Endemic areas for soil-transmitted helminthiases often lack the tools and trained personnel necessary for point-of-care diagnosis. This study pilots the use of smartphone microscopy and an artificial neural network-based (ANN) object detection application named Kankanet to address those two needs. METHODOLOGY PRINCIPAL FINDINGS:A smartphone was equipped with a USB Video Class (UVC) microscope attachment and Kankanet, which was trained to recognize eggs of Ascaris lumbricoides, Trichuris trichiura, and hookworm using a dataset of 2,078 images. It was evaluated for interpretive accuracy based on 185 new images. Fecal samples were processed using Kato-Katz (KK), spontaneous sedimentation technique in tube (SSTT), and Merthiolate-Iodine-Formaldehyde (MIF) techniques" ;
-    sc:featureList edam:operation_3552 ;
-    sc:name "Kankanet" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31381573" .
-
-<https://bio.tools/Kaposi> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0749,
-        edam:topic_2640,
-        edam:topic_3305,
-        edam:topic_3324 ;
-    sc:citation <https://doi.org/10.1101/2019.12.11.19013649> ;
-    sc:description """Using Media to Promote Public Awareness of Early Detection of Kaposi's Sarcoma in Africa.
-
-Early Detection of Kaposi's Sarcoma.
-
-In sub-Saharan Africa, Kaposi’s sarcoma (KS) is the most common HIV-associated cancer in men and second most common in women. Because of the high prevalence of HIV infection in the region, this high i. 6 Tracks. 7 Followers. Stream Tracks and Playlists from Early Detection of Kaposi's Sarcoma on your desktop or mobile device.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'media', 'Uganda', 'KS', 'exposure'""" ;
-    sc:featureList edam:operation_3659 ;
-    sc:name "Kaposi" ;
-    sc:url "https://soundcloud.com/kaposis_sarcoma" .
-
-<https://bio.tools/Kappa_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0621,
-        edam:topic_2229,
-        edam:topic_3382 ;
-    sc:citation <https://doi.org/10.1101/852772> ;
-    sc:description """Analysis of Curvature in Biological Image Data using B-splines.
-
-A Fiji plugin for Curvature Analysis.
-
-Kappa is A Fiji plugin for Curvature Analysis.
-
-You can fire a remote Jupyter notebook server and reproduce the analysis using Binder: https://mybinder.org/v2/gh/brouhardlab/Kappa/master?urlpath=lab/tree/Analysis/Notebooks.
-
-||| NAME (Kappa) SIMILAR TO (PUB. DIFFERENT) bio.tools/kappa (KAPPA).
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'Kappa '""" ;
-    sc:featureList edam:operation_0461,
-        edam:operation_3443,
-        edam:operation_3799 ;
-    sc:license "MIT" ;
-    sc:name "Kappa_autogenerated" ;
-    sc:url "https://github.com/brouhardlab/Kappa" .
-
 <https://bio.tools/Kaptive> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_2830,
@@ -39202,7 +31187,7 @@ Kaptive is a tool for bacterial surface polysaccharide locus typing and variant
     sc:url "http://kaptive.holtlab.net/" .
 
 <https://bio.tools/KataegisPortal> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0634,
@@ -39224,7 +31209,7 @@ KataegisPortal is an R package that provides utilities to detect and visualize t
     sc:url "https://github.com/MeichunCai/Kataegisportal" .
 
 <https://bio.tools/KeyPathwayMiner> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -39244,7 +31229,7 @@ Given a biological network and a set of case-control studies, KeyPathwayMiner ef
     sc:url "https://keypathwayminer.compbio.sdu.dk" .
 
 <https://bio.tools/KinVis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0102,
@@ -39266,7 +31251,7 @@ Given a biological network and a set of case-control studies, KeyPathwayMiner ef
         "Dr. Halima Bensmail" .
 
 <https://bio.tools/Kirchhoff_polynomials> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0820,
@@ -39283,93 +31268,93 @@ Efficient manipulation and compact generation of expressions of Kirchhoff polyno
     sc:url "https://gitlab.com/csb.ethz/KirchPy" .
 
 <https://bio.tools/KisSplice> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "KisSplice is a software that enables to analyse RNA-seq data with or without a reference genome." ;
     sc:name "KisSplice" ;
     sc:url "http://kissplice.prabi.fr" .
 
 <https://bio.tools/Kmasker> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0857" ;
-            sc:name "Sequence search results" ;
-            sc:sameAs "http://edamontology.org/data_0857" ],
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_1975" ;
+            sc:name "Annotation track" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0850" ;
-            sc:name "Sequence set" ;
-            sc:sameAs "http://edamontology.org/data_0850" ],
+            sc:additionalType "http://edamontology.org/data_0850" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence set" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3494" ;
-            sc:name "DNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3494" ],
+            sc:additionalType "http://edamontology.org/data_0857" ;
+            sc:encodingFormat "http://edamontology.org/format_1333" ;
+            sc:name "Sequence search results" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3495" ;
-            sc:name "RNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3495" ],
+            sc:additionalType "http://edamontology.org/data_3495" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "RNA sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3494" ;
-            sc:name "DNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3494" ],
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "DNA sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3494" ;
-            sc:name "DNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3494" ],
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "DNA sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ],
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "DNA sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3494" ;
-            sc:name "DNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3494" ] ;
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "DNA sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ],
+            sc:additionalType "http://edamontology.org/data_1361" ;
+            sc:encodingFormat "http://edamontology.org/format_3665" ;
+            sc:name "Position frequency matrix" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2914" ;
-            sc:name "Sequence features metadata" ;
-            sc:sameAs "http://edamontology.org/data_2914" ],
+            sc:additionalType "http://edamontology.org/data_2914" ;
+            sc:encodingFormat "http://edamontology.org/format_1975" ;
+            sc:name "Sequence features metadata" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1361" ;
-            sc:name "Position frequency matrix" ;
-            sc:sameAs "http://edamontology.org/data_1361" ],
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_1975" ;
+            sc:name "Annotation track" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3494" ;
-            sc:name "DNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3494" ],
+            sc:additionalType "http://edamontology.org/data_1361" ;
+            sc:encodingFormat "http://edamontology.org/format_3665" ;
+            sc:name "Position frequency matrix" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1772" ;
-            sc:name "Score" ;
-            sc:sameAs "http://edamontology.org/data_1772" ],
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "DNA sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1361" ;
-            sc:name "Position frequency matrix" ;
-            sc:sameAs "http://edamontology.org/data_1361" ],
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_1975" ;
+            sc:name "Annotation track" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1361" ;
-            sc:name "Position frequency matrix" ;
-            sc:sameAs "http://edamontology.org/data_1361" ],
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "DNA sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3494" ;
-            sc:name "DNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3494" ],
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_1975" ;
+            sc:name "Annotation track" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ],
+            sc:additionalType "http://edamontology.org/data_1772" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Score" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3494" ;
-            sc:name "DNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3494" ],
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Nucleic acid sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ],
+            sc:additionalType "http://edamontology.org/data_1361" ;
+            sc:encodingFormat "http://edamontology.org/format_3665" ;
+            sc:name "Position frequency matrix" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "DNA sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0157,
@@ -39405,7 +31390,7 @@ Efficient manipulation and compact generation of expressions of Kirchhoff polyno
         <https://orcid.org/0000-0003-1073-6719> .
 
 <https://bio.tools/Kmasker_plants> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0621,
@@ -39435,7 +31420,7 @@ Kmasker uses an interal repository for reuse of kindex structures.""" ;
     sc:url "https://kmasker.ipk-gatersleben.de" .
 
 <https://bio.tools/KnockTF> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -39454,7 +31439,7 @@ We develop a comprehensive human gene expression profile database with TF knockd
     sc:url "http://www.licpathway.net/KnockTF/index.html" .
 
 <https://bio.tools/Knot_pull> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTZ644>,
         "pubmed:31504154" ;
@@ -39465,7 +31450,7 @@ We develop a comprehensive human gene expression profile database with TF knockd
     sc:url "http://github.com/dzarmola/knot_pull" .
 
 <https://bio.tools/Knoto-ID> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0736,
@@ -39482,7 +31467,7 @@ We develop a comprehensive human gene expression profile database with TF knockd
     biotools:primaryContact "Julien Dorier" .
 
 <https://bio.tools/KnowPulse> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0199,
@@ -39498,7 +31483,7 @@ We develop a comprehensive human gene expression profile database with TF knockd
     sc:url "https://knowpulse.usask.ca" .
 
 <https://bio.tools/KoBra> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3314,
         edam:topic_3315,
@@ -39518,7 +31503,7 @@ We develop a comprehensive human gene expression profile database with TF knockd
     biotools:primaryContact "Panagiotis D. Kolokathis" .
 
 <https://bio.tools/KofamKOALA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0602,
@@ -39540,7 +31525,7 @@ KofamKOALA assigns K numbers to the user's sequence data by HMMER/HMMSEARCH agai
     sc:url "https://www.genome.jp/tools/kofamkoala/" .
 
 <https://bio.tools/KrakenUniq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0637,
         edam:topic_3174,
@@ -39560,7 +31545,7 @@ KofamKOALA assigns K numbers to the user's sequence data by HMMER/HMMSEARCH agai
     sc:url "https://github.com/hurwitzlab/krakenuniq" .
 
 <https://bio.tools/KronRLS-MKL> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3336,
@@ -39581,7 +31566,7 @@ KofamKOALA assigns K numbers to the user's sequence data by HMMER/HMMSEARCH agai
     biotools:primaryContact "André C. A. Nascimento" .
 
 <https://bio.tools/KymoButler> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3382,
@@ -39597,20 +31582,8 @@ KofamKOALA assigns K numbers to the user's sequence data by HMMER/HMMSEARCH agai
     sc:name "KymoButler" ;
     sc:url "http://kymobutler.deepmirror.ai" .
 
-<https://bio.tools/L1000> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0203,
-        edam:topic_2269,
-        edam:topic_3336 ;
-    sc:citation <https://doi.org/10.1101/769620> ;
-    sc:description "> VERY_LOW CONFIDENCE! | > HOMEPAGE BROKEN! | A Bayesian approach to accurate and robust signature detection on LINCS L1000 data | Abstract LINCS L1000 dataset produced by L1000 assay contains numerous cellular expression data induced by large sets of perturbagens. Although it provides invaluable resources for drug discovery as well as understanding of disease mechanisms, severe noise in the dataset makes the detection of reliable gene expression signals difficult. Existing methods for the peak deconvolution, either k -means based or Gaussian mixture model, cannot reliably recover the accurate expression level of genes in many cases, thereby limiting their robust applications in biomedical studies. Here, we have developed a novel Bayes’ theory based deconvolution algorithm that gives unbiased likelihood estimations for peak positions and characterizes the peak with a probability based z -scores" ;
-    sc:featureList edam:operation_0239,
-        edam:operation_2436,
-        edam:operation_3629 ;
-    sc:name "L1000" ;
-    sc:url "https://github.com/njpipeorgan/L1000bayesian" .
-
 <https://bio.tools/L1EM> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3170,
@@ -39637,7 +31610,7 @@ If necessary, you can specify the path for bwa and samtools in the run_L1EM.sh s
     sc:url "https://github.com/FenyoLab/L1EM" .
 
 <https://bio.tools/LABiocin_database> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
@@ -39649,24 +31622,8 @@ If necessary, you can specify the path for bwa and samtools in the run_L1EM.sh s
     sc:name "LABiocin database" ;
     sc:url "http://labiocin.net" .
 
-<https://bio.tools/LAGOS> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3063,
-        edam:topic_3305,
-        edam:topic_3577 ;
-    sc:citation <https://doi.org/10.1136/BMJHCI-2019-100037>,
-        "pubmed:31619388" ;
-    sc:description """learning health systems and how they can integrate with patient care.
-
-PROBLEM:Learning health systems (LHS) are an underexplored concept. How LHS will operate in clinical practice is not well understood. This paper investigates the relationships between LHS, clinical care process specifications (CCPS) and the established levels of medical practice to enable LHS integration into daily healthcare practice. METHODS:Concept analysis and thematic analysis were used to develop an LHS characterisation. Pathway theory was used to create a framework by relating LHS, CCPS, health information systems and the levels of medical practice. A case study approach evaluates the framework in an established health informatics project. RESULTS:Five concepts were identified and used to define the LHS learning cycle.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'LHS', 'LHS CCPS', 'CCPS', 'characterisation LHS'""" ;
-    sc:name "LAGOS" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31619388" .
-
 <https://bio.tools/LARMD> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0176,
@@ -39683,7 +31640,7 @@ Protein dynamics is central to all biological processes, including signal transd
     sc:url "http://chemyang.ccnu.edu.cn/ccb/server/LARMD/" .
 
 <https://bio.tools/LAS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_3325 ;
@@ -39695,7 +31652,7 @@ Protein dynamics is central to all biological processes, including signal transd
     biotools:primaryContact "Patrick Petrossians" .
 
 <https://bio.tools/LASHiS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3384,
@@ -39709,7 +31666,7 @@ Protein dynamics is central to all biological processes, including signal transd
     sc:url "https://github.com/thomshaw92/LASHiS" .
 
 <https://bio.tools/LASSI> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0154,
@@ -39728,7 +31685,7 @@ Many biomolecular condensates form via spontaneous phase transitions that are dr
     sc:url "https://github.com/Pappulab/LASSI" .
 
 <https://bio.tools/LAVA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0622,
@@ -39750,7 +31707,7 @@ LAVA analyzes and visualizes minor allele variants in longitudinal sequence data
     sc:url "https://github.com/michellejlin/lava" .
 
 <https://bio.tools/LAmbDA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2229,
@@ -39772,14 +31729,14 @@ LAVA analyzes and visualizes minor allele variants in longitudinal sequence data
 
 <https://bio.tools/LBEEP> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_2310" ;
+            sc:name "Sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0091 ;
     sc:author <https://orcid.org/0000-0001-5145-0384> ;
@@ -39795,7 +31752,7 @@ LAVA analyzes and visualizes minor allele variants in longitudinal sequence data
     sc:url "https://github.com/brsaran/LBEEP" .
 
 <https://bio.tools/LCA-CNN> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3382,
         edam:topic_3474 ;
@@ -39812,29 +31769,8 @@ Rotate training set for data augmentation.""" ;
     sc:name "LCA-CNN" ;
     sc:url "https://github.com/billzyx/LCA-CNN" .
 
-<https://bio.tools/LCPSSMMFSVM> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0121,
-        edam:topic_0128,
-        edam:topic_0621,
-        edam:topic_3315,
-        edam:topic_3474 ;
-    sc:citation <https://doi.org/10.1177/1176934319879920>,
-        "pmcid:PMC6777060",
-        "pubmed:31619921" ;
-    sc:description """An Efficient Feature Extraction Technique Based on Local Coding PSSM and Multifeatures Fusion for Predicting Protein-Protein Interactions.
-
-Background:Increasing evidence has indicated that protein-protein interactions (PPIs) play important roles in various aspects of the structural and functional organization of a cell. Thus, continuing to uncover potential PPIs is an important topic in the biomedical domain. Although various feature extraction methods with machine learning approaches have enhanced the prediction of PPIs. There remains room for improvement by developing novel and effective feature extraction methods and classifier approaches to identify PPIs. Method:In this study, we proposed a sequence-based feature extraction method called LCPSSMMF, which combined local coding position-specific scoring matrix (PSSM) with multifeatures fusion.
-
-||| HOMEPAGE BROKEN!""" ;
-    sc:featureList edam:operation_0253,
-        edam:operation_2492,
-        edam:operation_3092,
-        edam:operation_3454 ;
-    sc:name "LCPSSMMFSVM" ;
-    sc:url "http://219.219.62.123:8888/LCPSSMMFSVM" .
-
 <https://bio.tools/LD-annot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0625,
@@ -39861,25 +31797,8 @@ Email: jprunier.1@gmail.com or arnaud.droit@crchudequebec.ulaval.ca""" ;
     sc:name "LD-annot" ;
     sc:url "https://github.com/ArnaudDroitLab/LD-annot" .
 
-<https://bio.tools/LDAKM-EIoT> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3263,
-        edam:topic_3316,
-        edam:topic_3318 ;
-    sc:citation <https://doi.org/10.3390/S19245539>,
-        "pubmed:31847431" ;
-    sc:description """Lightweight Device Authentication and Key Management Mechanism for Edge-Based IoT Deployment.
-
-In recent years, edge computing has emerged as a new concept in the computing paradigm that empowers several future technologies, such as 5G, vehicle-to-vehicle communications, and the Internet of Things (IoT), by providing cloud computing facilities, as well as services to the end users. However, open communication among the entities in an edge based IoT environment makes it vulnerable to various potential attacks that are executed by an adversary. Device authentication is one of the prominent techniques in security that permits an IoT device to authenticate mutually with a cloud server with the help of an edge node. If authentication is successful, they establish a session key between them for secure communication.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'IoT'""" ;
-    sc:featureList edam:operation_3891 ;
-    sc:name "LDAKM-EIoT" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31847431" .
-
 <https://bio.tools/LDB> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3047,
@@ -39906,7 +31825,7 @@ MassIVE Datasets : Documentation : Forum : Contact.
     sc:url "https://gnps.ucsd.edu/ProteoSAFe/gnpslibrary.jsp?library=LDB_POSITIVE" .
 
 <https://bio.tools/LDPC> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0632 ;
     sc:citation <https://doi.org/10.1101/770032> ;
@@ -39916,7 +31835,7 @@ MassIVE Datasets : Documentation : Forum : Contact.
     sc:url "https://github.com/shubhamchandak94/LDPC_DNA_storage" .
 
 <https://bio.tools/LDassoc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0102,
@@ -39937,7 +31856,7 @@ MassIVE Datasets : Documentation : Forum : Contact.
     biotools:primaryContact "Mitchell J. Machiela" .
 
 <https://bio.tools/LDmotif> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -39960,7 +31879,7 @@ Users need to run scripts after changing the value of input parameters. The deat
     sc:url "https://github.com/tanviralambd/LD/" .
 
 <https://bio.tools/LEMON> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0114,
         edam:topic_3168,
@@ -39987,7 +31906,7 @@ git clone --recursive https://github.com/lichen2018/hgt-detection.git""" ;
     sc:url "https://github.com/lichen2018/LEMON" .
 
 <https://bio.tools/LESSeq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3170,
@@ -40009,7 +31928,7 @@ The Local Event-based analysis of alternative Splicing using RNA-Seq (or LESSeq)
     sc:url "https://github.com/gersteinlab/LESSeq" .
 
 <https://bio.tools/LFAQ> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -40029,7 +31948,7 @@ The Local Event-based analysis of alternative Splicing using RNA-Seq (or LESSeq)
         "Zhiqiang Gao" .
 
 <https://bio.tools/LFQ-Analyst> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -40056,7 +31975,7 @@ LFQ-Analyst is an easy-to-use, interactive web application developed to perform
     sc:url "https://bioinformatics.erc.monash.edu/apps/LFQ-Analyst" .
 
 <https://bio.tools/LFastqC> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3071,
         edam:topic_3168 ;
@@ -40072,7 +31991,7 @@ You can’t perform that action at this time""" ;
     sc:url "https://github.uconn.edu/sya12005/LFastqC" .
 
 <https://bio.tools/LGE> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3306,
         edam:topic_3384,
@@ -40096,7 +32015,7 @@ radiality - The angular extent of the LGE pattern, with values between 0 and 1.
     sc:url "https://github.com/GabrielBalabanResearch/lgemri_scar_metrics" .
 
 <https://bio.tools/LGG> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_2269,
@@ -40113,7 +32032,7 @@ BACKGROUND:Gliomas are the most common primary malignant brain tumor. Diffuse lo
     sc:url "https://hgittleman.shinyapps.io/LGG_Nomogram_H_Gittleman/" .
 
 <https://bio.tools/LIBR_MOCD> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3384,
         edam:topic_3444,
@@ -40124,7 +32043,7 @@ BACKGROUND:Gliomas are the most common primary malignant brain tumor. Diffuse lo
     sc:url "https://github.com/rkuplicki/LIBR_MOCD" .
 
 <https://bio.tools/LIDC> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0605,
         edam:topic_0621,
@@ -40146,7 +32065,7 @@ pylidc is an Object-relational mapping (using SQLAlchemy) for the data provided
     sc:url "https://pylidc.github.io/" .
 
 <https://bio.tools/LIGNIN-KMC> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0780,
         edam:topic_3314,
@@ -40163,7 +32082,7 @@ pylidc is an Object-relational mapping (using SQLAlchemy) for the data provided
     sc:url "https://github.com/michaelorella/lignin-kmc" .
 
 <https://bio.tools/LIMES> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0091 ;
     sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTZ911>,
@@ -40174,30 +32093,8 @@ We are pleased to announce the launch of Limes!.""" ;
     sc:name "LIMES" ;
     sc:url "http://www.limes.cnrs.fr" .
 
-<https://bio.tools/LINC00968_SFTA1P_GATA6-AS1_TBX5-AS1_FEZF1-AS1> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0203,
-        edam:topic_0602,
-        edam:topic_0659,
-        edam:topic_3170,
-        edam:topic_3512 ;
-    sc:citation <https://doi.org/10.3892/OL.2019.10744>,
-        "pmcid:PMC6757264",
-        "pubmed:31579094" ;
-    sc:description """SFTA1P, LINC00968, GATA6-AS1, TBX5-AS1, and FEZF1-AS1 are crucial long non-coding RNAs associated with the prognosis of lung squamous cell carcinoma.
-
-Lung cancer has high incidence and mortality rates, and lung squamous cell carcinoma (LUSC) is a common form of non-small-cell lung carcinoma (NSCLC). The aim of our study was to discover long non-coding RNAs (lncRNAs) associated with LUSC prognosis. RNA-sequencing data obtained from LUSC samples were extracted from The Cancer Genome Atlas database. Using the limma package, differentially expressed genes (DEGs; including differentially expressed lncRNA genes (DELs), coding genes (DECs), and other genes (DEOs)) between LUSC and control samples were analyzed.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'LINC00968 SFTA1P GATA6-AS1 TBX5-AS1', 'SFTA1P GATA6-AS1 TBX5-AS1 FEZF1-AS1', 'co-expressed LINC00968 SFTA1P GATA6-AS1 TBX5-AS1', 'DECs co-expressed LINC00968 SFTA1P GATA6-AS1'""" ;
-    sc:featureList edam:operation_3463,
-        edam:operation_3501,
-        edam:operation_3503 ;
-    sc:name "LINC00968 SFTA1P GATA6-AS1 TBX5-AS1 FEZF1-AS1" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31579094" .
-
 <https://bio.tools/LINbase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0780,
@@ -40209,7 +32106,7 @@ Lung cancer has high incidence and mortality rates, and lung squamous cell carci
     sc:url "http://www.LINbase.org" .
 
 <https://bio.tools/LION-web> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0153,
@@ -40231,7 +32128,7 @@ Lung cancer has high incidence and mortality rates, and lung squamous cell carci
     biotools:primaryContact <https://orcid.org/0000-0001-7311-3821> .
 
 <https://bio.tools/LIQUID_lipids_identification> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0153,
         edam:topic_0154,
@@ -40246,24 +32143,8 @@ Lung cancer has high incidence and mortality rates, and lung squamous cell carci
         <https://github.com/PNNL-Comp-Mass-Spec/LIQUID/blob/master/docs/LIQUID_installation_operation.pdf> ;
     sc:url "https://github.com/PNNL-Comp-Mass-Spec/LIQUID" .
 
-<https://bio.tools/LISAM> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0102,
-        edam:topic_3068,
-        edam:topic_3855 ;
-    sc:citation <https://doi.org/10.7287/PEERJ.PREPRINTS.2133V2> ;
-    sc:description """an open source GIS-based model for liveability spatial assessment.
-
-Ecosystem Services (ES) and Urban Services (US) influence place liveability in a comparable manner. Consequently, assessing landscape liveability considering both types of services can result effective for landscape planning and policy-making purposes. Since liveability depends also on local population preferences and perceptions, stakeholder involvement results essential for a more coherent liveability assessment. In this study a Spatial Multicriteria Decision Aiding (S-MCDA) approach guided the development of a LIveability Spatial Assessment Model (LISAM). Using a combination of GIS techniques (Euclidean distance, kernel density estimation, network analysis, viewshed analysis), consistent and comparable ES and US spatial indices were calculated in a study area located in central Italy.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'liveability'""" ;
-    sc:featureList edam:operation_3435 ;
-    sc:name "LISAM" ;
-    sc:url "https://doi.org/10.7287/PEERJ.PREPRINTS.2133V2" .
-
 <https://bio.tools/LLCT> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0121,
@@ -40284,7 +32165,7 @@ LLCT is a two-step self-contained gene-set analysis method which is developed to
     sc:url "https://github.com/its-likeli-jeff/LLCT" .
 
 <https://bio.tools/LM-GlycomeAtlas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0203,
@@ -40307,7 +32188,7 @@ LLCT is a two-step self-contained gene-set analysis method which is developed to
     sc:url "https://glycosmos.gitlab.io/lm-glycomeatlas" .
 
 <https://bio.tools/LOBSTER> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0769,
@@ -40323,7 +32204,7 @@ SUMMARY:Open source software such as ImageJ and CellProfiler greatly simplified
     sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31860062" .
 
 <https://bio.tools/LOINC2HPO> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0625,
@@ -40344,7 +32225,7 @@ SUMMARY:Open source software such as ImageJ and CellProfiler greatly simplified
     biotools:primaryContact <https://orcid.org/0000-0002-0736-9199> .
 
 <https://bio.tools/LOMETS2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0160,
@@ -40367,7 +32248,7 @@ SUMMARY:Open source software such as ImageJ and CellProfiler greatly simplified
     biotools:primaryContact "Yang Zhang" .
 
 <https://bio.tools/LONI-QC> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0593,
         edam:topic_3384,
@@ -40382,23 +32263,8 @@ SUMMARY:Open source software such as ImageJ and CellProfiler greatly simplified
     sc:name "LONI-QC" ;
     sc:url "http://qc.loni.usc.edu" .
 
-<https://bio.tools/LOTS-IM> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0634,
-        edam:topic_3444,
-        edam:topic_3474 ;
-    sc:citation <https://doi.org/10.1016/J.COMPMEDIMAG.2019.101685>,
-        "pubmed:31846826" ;
-    sc:description """Limited One-time Sampling Irregularity Map (LOTS-IM) for Automatic Unsupervised Assessment of White Matter Hyperintensities and Multiple Sclerosis Lesions in Structural Brain Magnetic Resonance Images.
-
-We present the application of limited one-time sampling irregularity map (LOTS-IM): a fully automatic unsupervised approach to extract brain tissue irregularities in magnetic resonance images (MRI), for quantitatively assessing white matter hyperintensities (WMH) of presumed vascular origin, and multiple sclerosis (MS) lesions and their progression. LOTS-IM generates an irregularity map (IM) that represents all voxels as irregularity values with respect to the ones considered "normal". Unlike probability values, IM represents both regular and irregular regions in the brain based on the original MRI's texture information.
-
-||| HOMEPAGE MISSING!""" ;
-    sc:featureList edam:operation_3435 ;
-    sc:name "LOTS-IM" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31846826" .
-
 <https://bio.tools/LOTUS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0199,
@@ -40420,7 +32286,7 @@ We propose a new computational method called LOTUS to predict new driver genes.
     sc:url "https://github.com/LOTUSproject/LOTUS" .
 
 <https://bio.tools/LP-SDA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2840,
@@ -40443,7 +32309,7 @@ Please kindly cite the paper if you use the code, datasets or any results in thi
     sc:url "https://github.com/ruoqi-liu/LP-SDA" .
 
 <https://bio.tools/LPM> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0659,
@@ -40464,7 +32330,7 @@ LPM (Latent Probit Model), is an efficient statistical approach to characterize
     sc:url "https://github.com/mingjingsi/LPM" .
 
 <https://bio.tools/LRCstats> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Script" ;
     sc:applicationSubCategory edam:topic_0102,
@@ -40483,7 +32349,7 @@ LPM (Latent Probit Model), is an efficient statistical approach to characterize
     sc:url "https://github.com/cchauve/lrcstats" .
 
 <https://bio.tools/LRScaf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
@@ -40502,7 +32368,7 @@ Hybrid assembly strategy is a reasonable and promising approach to utilize stren
     sc:url "https://github.com/shingocat/lrscaf" .
 
 <https://bio.tools/LRTK-SIM> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3168,
@@ -40527,49 +32393,8 @@ line2 and line3: Path_Fastahap1 and Path_Fastahap2, the two haploid reference se
     sc:name "LRTK-SIM" ;
     sc:url "https://github.com/zhanglu295/LRTK-SIM" .
 
-<https://bio.tools/LSA-SAF> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0749,
-        edam:topic_3318 ;
-    sc:citation <https://doi.org/10.20944/PREPRINTS201910.0232.V1> ;
-    sc:description """Satellite Retrieval of Downwelling Shortwave Surface Flux and Diffuse Fraction under All Sky Conditions in the Framework of the LSA SAF Program (Part 1.
-
-Satellite Application Facility Project.
-
-Access to this area is restricted to authorized users.
-
-Monitoring of Vegetation Condition.
-
-Example of drought detection by combining precipitation, vegetation indices and satellite derived evapotranspiration.
-
-To get access please register here.
-
-Release of new LSA SAF Climate Data Records.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'SAF', 'LSA SAF', 'atmosphere', 'solar'""" ;
-    sc:featureList edam:operation_2422,
-        edam:operation_3435,
-        edam:operation_3659 ;
-    sc:name "LSA-SAF" ;
-    sc:url "http://saf.eumetsat.int" .
-
-<https://bio.tools/LSA-SVM> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3382,
-        edam:topic_3473,
-        edam:topic_3474 ;
-    sc:citation <https://doi.org/10.3390/BIOS9040114>,
-        "pubmed:31569694" ;
-    sc:description """Label Self-Advised Support Vector Machine (LSA-SVM)-Automated Classification of Foot Drop Rehabilitation Case Study.
-
-Stroke represents a major health problem in our society. One of the effects of stroke is foot drop. Foot drop (FD) is a weakness that occurs in specific muscles in the ankle and foot such as the anterior tibialis, gastrocnemius, plantaris and soleus muscles. Foot flexion and extension are normally generated by lower motor neurons (LMN). The affected muscles impact the ankle and foot in both downward and upward motions. One possible solution for FD is to investigate the movement based on the bio signal (myoelectric signal) of the muscles. Bio signal control systems like electromyography (EMG) are used for rehabilitation devices that include foot drop. One of these systems is function electrical stimulation (FES).
-
-||| HOMEPAGE MISSING!""" ;
-    sc:featureList edam:operation_3435,
-        edam:operation_3454 ;
-    sc:name "LSA-SVM" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31569694" .
-
 <https://bio.tools/LST> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0593,
         edam:topic_3384,
@@ -40587,7 +32412,7 @@ Stroke represents a major health problem in our society. One of the effects of s
     biotools:primaryContact "Mark Mühlau" .
 
 <https://bio.tools/LSTD> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3382,
@@ -40599,7 +32424,7 @@ Stroke represents a major health problem in our society. One of the effects of s
     sc:url "https://github.com/Cassie94/LSTD/tree/lstd" .
 
 <https://bio.tools/LSTM> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_3170,
@@ -40613,7 +32438,7 @@ Stroke represents a major health problem in our society. One of the effects of s
     sc:url "https://github.com/rajkumar1501/sequence-prediction-using-CNN-and-LSTMs" .
 
 <https://bio.tools/LSTrAP-Lite> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0659,
@@ -40635,7 +32460,7 @@ If you use LSTrAP-Lite in your research, please cite: Inferring biosynthetic and
     sc:url "https://github.com/mutwil/LSTrAP-Lite" .
 
 <https://bio.tools/LSX> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0194,
         edam:topic_3293,
@@ -40649,7 +32474,7 @@ If you use LSTrAP-Lite in your research, please cite: Inferring biosynthetic and
     sc:url "https://github.com/carlosj-rr/LSx" .
 
 <https://bio.tools/LTER-MARECHIARA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0610 ;
     sc:description "Webpage dedicated to the visualization and management of environmental and planktonic data collected at the LTER-MC station in the Gulf of Naples." ;
@@ -40661,25 +32486,8 @@ If you use LSTrAP-Lite in your research, please cite: Inferring biosynthetic and
         "Windows" ;
     sc:url "http://szn.macisteweb.com/" .
 
-<https://bio.tools/LTIP> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0154,
-        edam:topic_0208,
-        edam:topic_0625,
-        edam:topic_2840,
-        edam:topic_3474 ;
-    sc:citation <https://doi.org/10.1186/S12859-019-3241-3>,
-        "pmcid:PMC6924142",
-        "pubmed:31861982" ;
-    sc:description """Biological representation of chemicals using latent target interaction profile.
-
-BACKGROUND:Computational prediction of a phenotypic response upon the chemical perturbation on a biological system plays an important role in drug discovery, and many other applications. Chemical fingerprints are a widely used feature to build machine learning models. However, the fingerprints that are derived from chemical structures ignore the biological context, thus, they suffer from several problems such as the activity cliff and curse of dimensionality. Fundamentally, the chemical modulation of biological activities is a multi-scale process. It is the genome-wide chemical-target interactions that modulate chemical phenotypic responses. Thus, the genome-scale chemical-target interaction profile will more directly correlate with in vitro and in vivo activities than the chemical structure.
-
-||| HOMEPAGE MISSING!""" ;
-    sc:name "LTIP" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31861982" .
-
 <https://bio.tools/LTMG> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3170,
@@ -40694,18 +32502,8 @@ BACKGROUND:Computational prediction of a phenotypic response upon the chemical p
     sc:name "LTMG" ;
     sc:url "https://github.com/zy26/LTMGSCA" .
 
-<https://bio.tools/LTR_FINDER_parallel> a sc:SoftwareApplication ;
-    sc:additionalType "Command-line tool" ;
-    sc:applicationSubCategory edam:topic_0157,
-        edam:topic_0749,
-        edam:topic_0780 ;
-    sc:citation <https://doi.org/10.1101/722736> ;
-    sc:description "parallelization of LTR_FINDER enabling rapid identification of long terminal repeat retrotransposons | A parallel wrapper for LTR_FINDER | ~ ~ ~ Run LTR_FINDER in parallel ~ ~ ~ | This is a Perl wrapper for LTR_FINEDR. All rights reserved to the original author. It's free for non-commercial use. For commercial use, a software agreement is required for LTR_FINDER. LTR_FINDER_parallel is released under open source license CC BY 4.0" ;
-    sc:name "LTR_FINDER_parallel" ;
-    sc:url "https://github.com/oushujun/LTR_FINDER_parallel" .
-
 <https://bio.tools/LUAD_LUSC> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_2640,
@@ -40722,7 +32520,7 @@ BACKGROUND:Computational prediction of a phenotypic response upon the chemical p
     sc:url "https://github.com/ELELAB/LUAD_LUSC_TCGA_comparison" .
 
 <https://bio.tools/LUCIDus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3172,
@@ -40736,7 +32534,7 @@ BACKGROUND:Computational prediction of a phenotypic response upon the chemical p
     sc:url "https://CRAN.R-project.org/package=LUCIDus" .
 
 <https://bio.tools/LULU> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3050,
         edam:topic_3168,
@@ -40751,7 +32549,7 @@ BACKGROUND:Computational prediction of a phenotypic response upon the chemical p
     sc:url "https://github.com/tobiasgf/lulu" .
 
 <https://bio.tools/LURE> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -40763,7 +32561,7 @@ BACKGROUND:Computational prediction of a phenotypic response upon the chemical p
     sc:url "https://sysbiowiki.soe.ucsc.edu/lure" .
 
 <https://bio.tools/LaMMA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3489 ;
     sc:citation <https://doi.org/10.7287/PEERJ.PREPRINTS.2247V3> ;
@@ -40776,7 +32574,7 @@ In attuazione del decreto legge D. Lgs n. 33 del 14 marzo 2013, che sancisce..."
     sc:url "http://dati.lamma.toscana.it" .
 
 <https://bio.tools/La_isla_de_tomato> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0102,
@@ -40799,44 +32597,8 @@ The manuscript is currently undergoing submission / revision, but this App is av
     sc:name "La isla de tomato" ;
     sc:url "https://github.com/mmjulkowska/La_isla_de_tomato" .
 
-<https://bio.tools/LabNet> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0199,
-        edam:topic_3168,
-        edam:topic_3519 ;
-    sc:citation <https://doi.org/10.3389/FONC.2019.00833>,
-        "pmcid:PMC6742705",
-        "pubmed:31555590" ;
-    sc:description "> MEDIUM CONFIDENCE! | > CORRECT NAME OF TOOL COULD ALSO BE 'CML', 'Monitoring Chronic Myeloid Leukemia', 'TKI', 'tempt' | How Molecular Tools May Drive Therapeutic Approaches | È una rete che mette in comunicazione i medici ematologi italiani che trattano la Leucemia Mieloide Cronica (CML) con laboratori dove si eseguono esami molto sofisticati di biologia molecolare . Al momento nella rete LabNet LMC operano 55 Laboratori, standardizzati e sottoposti a controlli di qualità; ciascun di essi, grazie alla rete, funziona da riferimento per uno o più Centri di ematologia" ;
-    sc:featureList edam:operation_3799,
-        edam:operation_3891 ;
-    sc:name "LabNet" ;
-    sc:url "http://www.gimema.it/labnet-cml/" .
-
-<https://bio.tools/Lancaster_Sensorimotor_Norms> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3068,
-        edam:topic_3382,
-        edam:topic_3474 ;
-    sc:citation <https://doi.org/10.3758/S13428-019-01316-Z>,
-        "pubmed:31832879" ;
-    sc:description """multidimensional measures of perceptual and action strength for 40,000 English words.
-
-: people : research : publications : contact.
-
-Modality-Specific Norms of Perceptual Strength.
-
-Sensorimotor information plays a fundamental role in cognition.
-
-Our modality-specific norms of perceptual strength ask people to rate their experience of particular concepts and properties using the five senses of hearing, sight, touch, taste and smell.
-
-A complete set of ratings for over 1000 words can be downloaded here""" ;
-    sc:featureList edam:operation_0337,
-        edam:operation_3359,
-        edam:operation_3436 ;
-    sc:name "Lancaster Sensorimotor Norms" ;
-    sc:url "https://www.lancaster.ac.uk/psychology/lsnorms/" .
-
 <https://bio.tools/LanceletDB> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -40858,7 +32620,7 @@ A complete set of ratings for over 1000 words can be downloaded here""" ;
     biotools:primaryContact "Anlong Xu" .
 
 <https://bio.tools/LandScape> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0602,
@@ -40877,17 +32639,8 @@ The 'LandScape' visualization is frequently utilized to provide a systematic ill
     sc:name "LandScape" ;
     sc:url "http://bio.oviz.org/demo-project/analyses/landscape" .
 
-<https://bio.tools/Landsat_MODIS_NOAA_AVHRR_forest> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3382,
-        edam:topic_3474,
-        edam:topic_3794 ;
-    sc:citation <https://doi.org/10.20944/PREPRINTS201909.0016.V1> ;
-    sc:description "> VERY_LOW CONFIDENCE! | > HOMEPAGE MISSING! | > CORRECT NAME OF TOOL COULD ALSO BE 'Landsat MODIS NOAA AVHRR', 'Ghana', 'MODIS NOAA AVHRR forest', 'MODIS NOAA AVHRR' | Long Term Monitoring of Ghana’s Forest Reserves Using Google Earth Engine | Farm activities continued sand winning operations and the allocation of plots of land to prospective developers in Ghana pose a serious threat to the forest covers and lifespan of the Forest and game reserves. With all the positive add ups to the country from forests, Ghana has lost more than 33.7%(equivalent to 2,500,000 hectares) of its forest, since the early 1990s between 2005 and 2010, the rate of deforestation in Ghana was estimated at 2.19% per annum; the sixth highest deforestation rate globally for that period. This shows how important forest monitoring can be to the forestry commission in Ghana" ;
-    sc:name "Landsat MODIS NOAA AVHRR forest" ;
-    sc:url "https://doi.org/10.20944/PREPRINTS201909.0016.V1" .
-
 <https://bio.tools/Laniakea> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service",
         "Workbench" ;
     sc:author <https://orcid.org/0000-0002-7088-1283>,
@@ -40910,7 +32663,7 @@ The 'LandScape' visualization is frequently utilized to provide a systematic ill
     biotools:primaryContact <https://orcid.org/0000-0003-3487-4331> .
 
 <https://bio.tools/LassoNet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3474 ;
@@ -40921,7 +32674,7 @@ The 'LandScape' visualization is frequently utilized to provide a systematic ill
     sc:url "https://lassonet.github.io" .
 
 <https://bio.tools/LeGOO> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0602,
@@ -40939,27 +32692,8 @@ Medicago truncatula was proposed, about three decades ago, as a model legume to
     sc:name "LeGOO" ;
     sc:url "https://www.legoo.org" .
 
-<https://bio.tools/LePrimAlign> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0080,
-        edam:topic_0128,
-        edam:topic_3557 ;
-    sc:citation <https://doi.org/10.1186/S12864-019-6271-3>,
-        "pmcid:PMC6929407",
-        "pubmed:31874635" ;
-    sc:description """local entropy-based alignment of PPI networks to predict conserved modules.
-
-LePrimAlign: local entropy-based alignment of PPI networks.
-
-Cross-species analysis of protein-protein interaction (PPI) networks provides an effective means of detecting conserved interaction patterns""" ;
-    sc:featureList edam:operation_0491,
-        edam:operation_0495,
-        edam:operation_2492,
-        edam:operation_3439 ;
-    sc:name "LePrimAlign" ;
-    sc:url "http://web.ecs.baylor.edu/faculty/cho/LePrimAlign" .
-
 <https://bio.tools/Lead-DBS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3334,
         edam:topic_3384,
@@ -40978,7 +32712,7 @@ Cross-species analysis of protein-protein interaction (PPI) networks provides an
     sc:url "https://www.lead-dbs.org/" .
 
 <https://bio.tools/Leaf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3063,
         edam:topic_3303,
@@ -40998,7 +32732,7 @@ Cross-species analysis of protein-protein interaction (PPI) networks provides an
     biotools:primaryContact "Sean D. Mooney" .
 
 <https://bio.tools/LecoS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_2269 ;
@@ -41009,7 +32743,7 @@ Cross-species analysis of protein-protein interaction (PPI) networks provides an
     sc:url "http://plugins.qgis.org/plugins/LecoS/" .
 
 <https://bio.tools/Legofit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0199,
@@ -41029,26 +32763,21 @@ Legofit is a computer package that uses counts of nucleotide site patterns to es
 
 <https://bio.tools/LegumeMine> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2353" ;
-            sc:name "Ontology data" ;
-            sc:sameAs "http://edamontology.org/data_2353" ],
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:name "Sequence features" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ] ;
+            sc:additionalType "http://edamontology.org/data_2353" ;
+            sc:name "Ontology data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3753" ;
-            sc:name "Over-representation data" ;
-            sc:sameAs "http://edamontology.org/data_3753" ],
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:name "Sequence features" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3786" ;
-            sc:name "Query script" ;
-            sc:sameAs "http://edamontology.org/data_3786" ],
+            sc:additionalType "http://edamontology.org/data_3786" ;
+            sc:name "Query script" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3753" ;
+            sc:name "Over-representation data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application",
         "Web service" ;
@@ -41071,26 +32800,8 @@ Legofit is a computer package that uses counts of nucleotide site patterns to es
     sc:softwareVersion "11" ;
     sc:url "https://mines.legumeinfo.org/legumemine" .
 
-<https://bio.tools/Legumefix_Sympal_vermicompost_Legumefix_Sympal> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0625,
-        edam:topic_3361,
-        edam:topic_3810 ;
-    sc:citation <https://doi.org/10.1016/J.STILL.2019.06.007>,
-        "pmcid:PMC6743212",
-        "pubmed:31680708" ;
-    sc:description """Variability of soybean response to rhizobia inoculant, vermicompost, and a legume-specific fertilizer blend in Siaya County of Kenya.
-
-Rhizobia inoculation can increase soybean yield, but its performance is influenced by among others soybean genotype, rhizobia strains, environment, and crop management. The objective of the study was to assess soybean response to rhizobia inoculation when grown in soils amended with urea or vermicompost to improve nitrogen levels. Two greenhouse experiments and one field trial at two sites were carried out. The first greenhouse experiment included soils from sixty locations, sampled from smallholder farms in Western Kenya.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'Sympal vermicompost Legumefix Sympal urea', 'urea Legumefix Sympal vermicompost Legumefix', 'Legumefix Sympal vermicompost Legumefix', 'Sympal vermicompost Legumefix Sympal'""" ;
-    sc:featureList edam:operation_3196 ;
-    sc:name "Legumefix Sympal vermicompost Legumefix Sympal" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31680708" .
-
 <https://bio.tools/LeishInDB> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0091 ;
     sc:citation <https://doi.org/10.1016/j.actatropica.2018.12.022>,
@@ -41108,7 +32819,7 @@ Rhizobia inoculation can increase soybean yield, but its performance is influenc
     biotools:primaryContact <https://orcid.org/0000-0001-5145-0384> .
 
 <https://bio.tools/LiGIoNs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0160,
@@ -41127,7 +32838,7 @@ LiGIoNs is a profile Hidden Markov Model based method capable of predicting Liga
     sc:url "http://bioinformatics.biol.uoa.gr/ligions/" .
 
 <https://bio.tools/LiPLike> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2640,
@@ -41148,24 +32859,8 @@ LiGIoNs is a profile Hidden Markov Model based method capable of predicting Liga
     biotools:primaryContact "Mika Gustafsson",
         "Rasmus Magnusson" .
 
-<https://bio.tools/LiSep_LSTM> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3324,
-        edam:topic_3400,
-        edam:topic_3474 ;
-    sc:citation <https://doi.org/10.1038/S41598-019-51219-4>,
-        "pmcid:PMC6805937",
-        "pubmed:31641162" ;
-    sc:description """A Machine Learning Algorithm for Early Detection of Septic Shock.
-
-Sepsis is a major health concern with global estimates of 31.5 million cases per year. Case fatality rates are still unacceptably high, and early detection and treatment is vital since it significantly reduces mortality rates for this condition. Appropriately designed automated detection tools have the potential to reduce the morbidity and mortality of sepsis by providing early and accurate identification of patients who are at risk of developing sepsis. In this paper, we present "LiSep LSTM"; a Long Short-Term Memory neural network designed for early identification of septic shock. LSTM networks are typically well-suited for detecting long-term dependencies in time series data. LiSep LSTM was developed using the machine learning framework Keras with a Google TensorFlow back end.
-
-||| HOMEPAGE MISSING!""" ;
-    sc:featureList edam:operation_3439 ;
-    sc:name "LiSep LSTM" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31641162" .
-
 <https://bio.tools/Libra_k-mer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3050,
         edam:topic_3174,
@@ -41187,7 +32882,7 @@ Sepsis is a major health concern with global estimates of 31.5 million cases per
     biotools:primaryContact "Illyoung Choi" .
 
 <https://bio.tools/LiceBase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_3573 ;
@@ -41204,14 +32899,13 @@ Sepsis is a major health concern with global estimates of 31.5 million cases per
 
 <https://bio.tools/Lifemap> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3028" ;
-            sc:name "Taxonomy" ;
-            sc:sameAs "http://edamontology.org/data_3028" ] ;
+            sc:additionalType "http://edamontology.org/data_3028" ;
+            sc:name "Taxonomy" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3028" ;
-            sc:name "Taxonomy" ;
-            sc:sameAs "http://edamontology.org/data_3028" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3028" ;
+            sc:encodingFormat "http://edamontology.org/format_1910" ;
+            sc:name "Taxonomy" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Web service" ;
     sc:applicationSubCategory edam:topic_3050,
@@ -41233,7 +32927,7 @@ Sepsis is a major health concern with global estimates of 31.5 million cases per
     sc:url "http://lifemap.univ-lyon1.fr" .
 
 <https://bio.tools/LightCpG> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_3673 ;
     sc:citation <https://doi.org/10.1186/S12864-019-5742-X>,
@@ -41250,18 +32944,8 @@ Sepsis is a major health concern with global estimates of 31.5 million cases per
     sc:url "https://github.com/guofei-tju/LightCpG" ;
     biotools:primaryContact <https://orcid.org/0000-0001-8346-0798> .
 
-<https://bio.tools/LightGBM> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_2258,
-        edam:topic_3343,
-        edam:topic_3474 ;
-    sc:citation <https://doi.org/10.1021/ACS.JCIM.9B00633>,
-        "pubmed:31560206" ;
-    sc:description "> MEDIUM CONFIDENCE! | > HOMEPAGE MISSING! | An Effective and Scalable Algorithm for Prediction of Chemical Toxicity-Application to the Tox21 and Mutagenicity Data Sets | Machine learning algorithms have attained widespread use in assessing the potential toxicities of pharmaceuticals and industrial chemicals because of their faster speed and lower cost compared to experimental bioassays. Gradient boosting is an effective algorithm that often achieves high predictivity, but historically the relative long computational time limited its applications in predicting large compound libraries or developing in silico predictive models that require frequent retraining. LightGBM, a recent improvement of the gradient boosting algorithm, inherited its high predictivity but resolved its scalability and long computational time by adopting a leaf-wise tree growth strategy and introducing novel techniques" ;
-    sc:name "LightGBM" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31560206" .
-
 <https://bio.tools/LikeLTD> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0625,
@@ -41284,7 +32968,7 @@ Sepsis is a major health concern with global estimates of 31.5 million cases per
     biotools:primaryContact "Christopher Steele" .
 
 <https://bio.tools/Lilikoi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0602,
@@ -41308,18 +32992,18 @@ Sepsis is a major health concern with global estimates of 31.5 million cases per
 
 <https://bio.tools/LinX> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2978" ;
-            sc:name "Reaction data" ;
-            sc:sameAs "http://edamontology.org/data_2978" ],
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2978" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Reaction data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0121,
@@ -41345,14 +33029,13 @@ Sepsis is a major health concern with global estimates of 31.5 million cases per
 
 <https://bio.tools/Linclust> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0850" ;
-            sc:name "Sequence set" ;
-            sc:sameAs "http://edamontology.org/data_0850" ] ;
+            sc:additionalType "http://edamontology.org/data_0850" ;
+            sc:encodingFormat "http://edamontology.org/format_2182" ;
+            sc:name "Sequence set" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1235" ;
-            sc:name "Sequence cluster" ;
-            sc:sameAs "http://edamontology.org/data_1235" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1235" ;
+            sc:name "Sequence cluster" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0078,
@@ -41375,7 +33058,7 @@ Sepsis is a major health concern with global estimates of 31.5 million cases per
     biotools:primaryContact "Söding Lab" .
 
 <https://bio.tools/LinearFold> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_3512,
@@ -41391,7 +33074,7 @@ Sepsis is a major health concern with global estimates of 31.5 million cases per
     sc:url "http://linearfold.org" .
 
 <https://bio.tools/Link-HD> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0780 ;
@@ -41415,7 +33098,7 @@ Laura M Zingaretti, Gilles Renand, Diego P Morgavi, Yuliaxis Ramayo-Caldas, Link
     sc:url "https://github.com/lauzingaretti/LinkHD" .
 
 <https://bio.tools/LinkPhinder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0601,
@@ -41433,7 +33116,7 @@ Abstract Phosphorylation of specific substrates by protein kinases is a key cont
     sc:url "https://LinkPhinder.insight-centre.org/" .
 
 <https://bio.tools/LinkeDomics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2640,
@@ -41455,7 +33138,7 @@ Abstract Phosphorylation of specific substrates by protein kinases is a key cont
     biotools:primaryContact "Xiaohua Chen" .
 
 <https://bio.tools/Linked_Registries> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3325 ;
@@ -41473,7 +33156,7 @@ Abstract Phosphorylation of specific substrates by protein kinases is a key cont
     sc:url "http://bioinformatics.ua.pt/linked-registries-app/#" .
 
 <https://bio.tools/LipMat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0153,
@@ -41498,7 +33181,7 @@ Matlab Script for automated LC-MS/MS lipid analysis.""" ;
     sc:url "https://github.com/MarJakubec/LipMat" .
 
 <https://bio.tools/Lipase_Engineering_Database> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0130,
         edam:topic_0154,
@@ -41513,7 +33196,7 @@ Matlab Script for automated LC-MS/MS lipid analysis.""" ;
     sc:url "https://led.biocatnet.de" .
 
 <https://bio.tools/Lipase_reclassification> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0623,
         edam:topic_0821,
@@ -41534,7 +33217,7 @@ Matlab Script for automated LC-MS/MS lipid analysis.""" ;
     biotools:primaryContact "Thomas C. A. Hitch" .
 
 <https://bio.tools/LipidIMMS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0153,
         edam:topic_0769,
@@ -41554,7 +33237,7 @@ Questions: zhouzw AT sioc.ac.cn, jiangzhu AT sioc.ac.cn.
     sc:url "http://imms.zhulab.cn/LipidIMMS/" .
 
 <https://bio.tools/LipidMS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0153,
         edam:topic_3337,
@@ -41574,7 +33257,7 @@ Questions: zhouzw AT sioc.ac.cn, jiangzhu AT sioc.ac.cn.
     biotools:primaryContact "M Isabel Alcoriza-Balaguer" .
 
 <https://bio.tools/LipidMatch_Normalizer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0153,
         edam:topic_0769,
@@ -41599,7 +33282,7 @@ Questions: zhouzw AT sioc.ac.cn, jiangzhu AT sioc.ac.cn.
         "Jeremy Koelmel" .
 
 <https://bio.tools/Lipid_Mini-On> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0089,
@@ -41619,33 +33302,8 @@ Questions: zhouzw AT sioc.ac.cn, jiangzhu AT sioc.ac.cn.
     biotools:primaryContact "Geremy Clair",
         "Jennifer E. Kyle" .
 
-<https://bio.tools/LitGen> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3053,
-        edam:topic_3068,
-        edam:topic_3474 ;
-    sc:citation "pubmed:31797587" ;
-    sc:description """Genetic Literature Recommendation Guided by Human Explanations.
-
-As genetic sequencing costs decrease, the lack of clinical interpretation of variants has become the bottleneck in using genetics data. A major rate limiting step in clinical interpretation is the manual curation of evidence in the genetic literature by highly trained biocurators. What makes curation particularly time-consuming is that the curator needs to identify papers that study variant pathogenicity using different types of approaches and evidences-e.g. biochemical assays or case control analysis. In collaboration with the Clinical Genomic Resource (ClinGen)-the flagship NIH program for clinical curation-we propose the first machine learning system, LitGen, that can retrieve papers for a particular variant and filter them by specific evidence types used by curators to assess for pathogenicity. LitGen uses semi-supervised deep learning to predict the type of evi+dence provided by each paper.
-
-||| HOMEPAGE MISSING!""" ;
-    sc:featureList edam:operation_2422,
-        edam:operation_3197,
-        edam:operation_3675 ;
-    sc:name "LitGen" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31797587" .
-
-<https://bio.tools/Litkey_Corpus> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3399,
-        edam:topic_3418 ;
-    sc:citation <https://doi.org/10.3758/S13428-019-01261-X>,
-        "pubmed:31376074" ;
-    sc:description "> LOW CONFIDENCE! | > CORRECT NAME OF TOOL COULD ALSO BE 'ANNIS', 'corpus' | A richly annotated longitudinal corpus of German texts written by primary school children | Welcome to the Litkey Corpus, a longitudinal corpus of picture story descriptions produced by German primary school children from grades 2 to 4. Litkey is short for “Literacy as the key to social participation: Psycholinguistic perspectives on orthography instruction and literacy acquisition” and refers to the research project in which the corpus was created. Here you can find a general description of the aims of the project and the four project strands that are involved. In the strand Corpus Analysis, we investigate the relationship between spelling errors of beginning writers and the orthographic properties of words based on the Litkey Corpus. You can find out more about the strand Corpus Analysis here" ;
-    sc:name "Litkey Corpus" ;
-    sc:url "https://www.linguistics.rub.de/litkeycorpus/" .
-
 <https://bio.tools/LnCeVar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0634,
@@ -41670,7 +33328,7 @@ e.g. NEAT1, TP53, hsa-let-7b-5p, rs3825071, COSN13341324, BRCA""" ;
     sc:url "http://www.bio-bigdata.net/LnCeVar/" .
 
 <https://bio.tools/LncADeep> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0659,
@@ -41690,7 +33348,7 @@ e.g. NEAT1, TP53, hsa-let-7b-5p, rs3825071, COSN13341324, BRCA""" ;
     biotools:primaryContact "Huaiqiu Zhu" .
 
 <https://bio.tools/LncBook> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0634,
@@ -41702,27 +33360,8 @@ e.g. NEAT1, TP53, hsa-let-7b-5p, rs3825071, COSN13341324, BRCA""" ;
     sc:name "LncBook" ;
     sc:url "http://bigd.big.ac.cn/lncbook" .
 
-<https://bio.tools/LncDisAP> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0602,
-        edam:topic_0634,
-        edam:topic_0659,
-        edam:topic_2640,
-        edam:topic_3512 ;
-    sc:citation <https://doi.org/10.1186/S12859-019-3081-1>,
-        "pmcid:PMC6886169",
-        "pubmed:31787106" ;
-    sc:description """a computation model for LncRNA-disease association prediction based on multiple biological datasets.
-
-BACKGROUND:Over the past decades, a large number of long non-coding RNAs (lncRNAs) have been identified. Growing evidence has indicated that the mutation and dysregulation of lncRNAs play a critical role in the development of many complex human diseases. Consequently, identifying potential disease-related lncRNAs is an effective means to improve the quality of disease diagnostics and treatment, which is the motivation of this work. Here, we propose a computational model (LncDisAP) for potential disease-related lncRNA identification based on multiple biological datasets. First, the associations between lncRNA and different data sources are collected from different databases. With these data sources as dimensions, we calculate the functional associations between lncRNAs by the recommendation strategy of collaborative filtering.
-
-||| HOMEPAGE MISSING!""" ;
-    sc:featureList edam:operation_3435,
-        edam:operation_3439 ;
-    sc:name "LncDisAP" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31787106" .
-
 <https://bio.tools/LncTarD> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_0659,
@@ -41745,7 +33384,7 @@ Quick Search, start typing keywords, press ESC to close suggestions""" ;
     sc:url "http://biocc.hrbmu.edu.cn/LncTarD/" .
 
 <https://bio.tools/LncVar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0659,
@@ -41768,7 +33407,7 @@ Quick Search, start typing keywords, press ESC to close suggestions""" ;
     sc:url "http://bioinfo.ibp.ac.cn/LncVar" .
 
 <https://bio.tools/LoReAn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0780,
         edam:topic_3170,
@@ -41790,7 +33429,7 @@ Quick Search, start typing keywords, press ESC to close suggestions""" ;
     biotools:primaryContact "Luigi Faino" .
 
 <https://bio.tools/LocPL> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0140,
@@ -41809,36 +33448,23 @@ Are you sure you want to delete this graph?""" ;
     sc:name "LocPL" ;
     sc:url "http://graphspace.org/graphs/?query=tags:LocPL" .
 
-<https://bio.tools/LocoWhisk> a sc:SoftwareApplication ;
-    sc:citation <https://doi.org/10.1016/J.JNEUMETH.2019.108440>,
-        "pubmed:31560929" ;
-    sc:description "> MEDIUM CONFIDENCE! | > HOMEPAGE MISSING! | > CORRECT NAME OF TOOL COULD ALSO BE 'whisker', 'whisker gait', 'gait', 'footage' | Quantifying rodent exploratory, sensory and motor behaviours | BACKGROUND:Previous studies have demonstrated that analysing whisker movements and locomotion allows us to quantify the behavioural consequences of sensory, motor and cognitive deficits in rodents. Independent whisker and feet trackers exist but there is no fully-automated, open-source software and hardware solution, that measures both whisker movements and gait. NEW METHOD:We present the LocoWhisk arena and new accompanying software (ARTv2) that allows the automatic detection and measurement of both whisker and gait information from high-speed video footage" ;
-    sc:featureList edam:operation_3443 ;
-    sc:name "LocoWhisk" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31560929" .
-
 <https://bio.tools/LocustMine> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2353" ;
-            sc:name "Ontology data" ;
-            sc:sameAs "http://edamontology.org/data_2353" ],
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:name "Sequence features" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ] ;
+            sc:additionalType "http://edamontology.org/data_2353" ;
+            sc:name "Ontology data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ],
+            sc:additionalType "http://edamontology.org/data_3786" ;
+            sc:name "Query script" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3753" ;
-            sc:name "Over-representation data" ;
-            sc:sameAs "http://edamontology.org/data_3753" ],
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:name "Sequence features" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3786" ;
-            sc:name "Query script" ;
-            sc:sameAs "http://edamontology.org/data_3786" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3753" ;
+            sc:name "Over-representation data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application",
         "Web service" ;
@@ -41862,7 +33488,7 @@ Are you sure you want to delete this graph?""" ;
     sc:url "http://locustmine.org:8080/locustmine" .
 
 <https://bio.tools/Logomaker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3068,
         edam:topic_3512,
@@ -41882,20 +33508,8 @@ Are you sure you want to delete this graph?""" ;
     biotools:primaryContact "Ammar Tareen",
         "Justin Kinney" .
 
-<https://bio.tools/LongTerm> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0154,
-        edam:topic_0625,
-        edam:topic_0634 ;
-    sc:citation <https://doi.org/10.1002/ECE3.5460>,
-        "pmcid:PMC6706235",
-        "pubmed:31463010" ;
-    sc:description "> LOW CONFIDENCE! | > CORRECT NAME OF TOOL COULD ALSO BE 'Suicidal selection', 'PCD', 'kin', 'kin nonkin' | Programmed cell death can evolve in unicellular organisms due solely to kin selection | SuicidalAltruismDissertation" ;
-    sc:featureList edam:operation_3196 ;
-    sc:name "LongTerm" ;
-    sc:url "https://github.com/anyaevostinar/SuicidalAltruismDissertation/tree/master/LongTerm" .
-
 <https://bio.tools/Look4TRs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_2885 ;
@@ -41913,7 +33527,7 @@ Are you sure you want to delete this graph?""" ;
     biotools:primaryContact "Hani Z. Girgis" .
 
 <https://bio.tools/Loxodonta_Localizer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0632,
@@ -41936,7 +33550,7 @@ Loxodonta Localizer maps the localities from which mitochondrial DNA sequences h
     sc:url "http://www.loxodontalocalizer.org" .
 
 <https://bio.tools/LungMAP> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0121,
@@ -41972,26 +33586,21 @@ LungMAP human and mouse ontologies reference page provides links to the LungMAP
 
 <https://bio.tools/LupinMine> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2353" ;
-            sc:name "Ontology data" ;
-            sc:sameAs "http://edamontology.org/data_2353" ],
+            sc:additionalType "http://edamontology.org/data_2353" ;
+            sc:name "Ontology data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ] ;
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:name "Sequence features" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3753" ;
-            sc:name "Over-representation data" ;
-            sc:sameAs "http://edamontology.org/data_3753" ],
+            sc:additionalType "http://edamontology.org/data_3786" ;
+            sc:name "Query script" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ],
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:name "Sequence features" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3786" ;
-            sc:name "Query script" ;
-            sc:sameAs "http://edamontology.org/data_3786" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3753" ;
+            sc:name "Over-representation data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application",
         "Web service" ;
@@ -42015,7 +33624,7 @@ LungMAP human and mouse ontologies reference page provides links to the LungMAP
     sc:url "https://mines.legumeinfo.org/lupinmine" .
 
 <https://bio.tools/LutzoDexTM> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_3382,
@@ -42029,7 +33638,7 @@ Here we present an Android mobile application (app) for the identification of Br
     sc:url "https://play.google.com/store/apps/details?id=max.com.lutzodexhl=pt_BR." .
 
 <https://bio.tools/LuxR> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3169,
@@ -42050,7 +33659,7 @@ FileUtil.pm - perl helper module for loading files reformatFasta.pl - perl scrip
     sc:url "https://github.com/Juliacvk/LuxR_H-NS" .
 
 <https://bio.tools/LyoPRONTO> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3068 ;
     sc:citation <https://doi.org/10.1208/S12249-019-1532-7>,
@@ -42066,7 +33675,7 @@ This work presents a new user-friendly lyophilization simulation and process opt
     sc:url "https://sites.google.com/view/rgdart/Research/lyopronto-lyophilization-processoptimization-tool" .
 
 <https://bio.tools/M-GCTA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2885,
@@ -42081,7 +33690,7 @@ This work presents a new user-friendly lyophilization simulation and process opt
     sc:url "https://github.com/uqzqiao/M-GCTA" .
 
 <https://bio.tools/M-TRACK> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2229,
@@ -42100,7 +33709,7 @@ M-TRACK is a live cell imaging analysis tool""" ;
     sc:url "https://github.com/opnumten/M-TRACK" .
 
 <https://bio.tools/M1CR0B1AL1Z3R> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0084,
@@ -42124,7 +33733,7 @@ M-TRACK is a live cell imaging analysis tool""" ;
     biotools:primaryContact "Tal Pupko" .
 
 <https://bio.tools/M3S> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_3170,
@@ -42144,7 +33753,7 @@ A large number of single-cell RNA sequencing (scRNA-seq) data set was recently g
     sc:url "https://github.com/zy26/M3S" .
 
 <https://bio.tools/MAC-INMV-SSR> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2885,
@@ -42159,7 +33768,7 @@ Genotyping of Mycobacterium avium subsp. paratuberculosis (Map) is an indispensa
     sc:url "http://mac-inmv.tours.inra.fr/0_macinmv/" .
 
 <https://bio.tools/MACV> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0176,
@@ -42184,7 +33793,7 @@ fep_config - contains everything necessary to run the dual topology fep.""" ;
     sc:url "https://github.com/clauswilke/MACV_SMD" .
 
 <https://bio.tools/MADOKA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0108,
@@ -42209,7 +33818,7 @@ MADOKA, a webserver features on searching similar protein structures by aligning
     sc:url "http://madoka.denglab.org/" .
 
 <https://bio.tools/MADloy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2885,
         edam:topic_3168,
@@ -42224,21 +33833,27 @@ MADOKA, a webserver features on searching similar protein structures by aligning
 
 <https://bio.tools/MAFFT> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1007/978-1-62703-646-7_8>,
         <https://doi.org/10.1093/bib/bbx108>,
         <https://doi.org/10.1093/bioinformatics/bty121>,
-        <https://doi.org/10.7490/f1000research.1114334.1> ;
+        <https://doi.org/10.1093/molbev/mst010>,
+        <https://doi.org/10.1093/nar/gki198>,
+        <https://doi.org/10.7490/f1000research.1114334.1>,
+        "pmcid:PMC3603318",
+        "pmcid:PMC548345",
+        "pubmed:15661851",
+        "pubmed:23329690" ;
     sc:description "MAFFT (Multiple Alignment using Fast Fourier Transform) is a high speed multiple sequence alignment program." ;
     sc:featureList edam:operation_0492 ;
     sc:isAccessibleForFree true ;
@@ -42251,7 +33866,7 @@ MADOKA, a webserver features on searching similar protein structures by aligning
     sc:url "http://mafft.cbrc.jp/alignment/server/index.html" .
 
 <https://bio.tools/MAFFT-DASH> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0084,
@@ -42277,14 +33892,14 @@ MADOKA, a webserver features on searching similar protein structures by aligning
 
 <https://bio.tools/MAFFT_API_EBI> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1093/bib/bbn013> ;
@@ -42299,7 +33914,7 @@ MADOKA, a webserver features on searching similar protein structures by aligning
     sc:url "http://www.ebi.ac.uk/Tools/webservices/services/msa/mafft_rest" .
 
 <https://bio.tools/MAGI-S> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0602,
@@ -42321,7 +33936,7 @@ Merge A ffected G enes into I ntegrated networks.""" ;
     sc:url "https://github.com/jchow32/magi-s" .
 
 <https://bio.tools/MAGO> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0196,
@@ -42340,7 +33955,7 @@ Microbial species play important roles in different environments and the product
     sc:url "http://mago.fe.uni-lj.si" .
 
 <https://bio.tools/MAGOS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_2640,
@@ -42357,7 +33972,7 @@ MAGOS: Model-based Adaptive Grouping of Subclones""" ;
     sc:url "https://github.com/liliulab/magos" .
 
 <https://bio.tools/MAGenTA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Suite" ;
     sc:applicationSubCategory edam:topic_0659,
@@ -42378,20 +33993,8 @@ MAGOS: Model-based Adaptive Grouping of Subclones""" ;
     sc:url "https://vanopijnenlab.github.io/MAGenTA/" ;
     biotools:primaryContact "Tim van Opijnen" .
 
-<https://bio.tools/MAICA> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3304,
-        edam:topic_3315,
-        edam:topic_3474 ;
-    sc:citation <https://doi.org/10.1088/1741-2552/AB36DB>,
-        "pubmed:31362282" ;
-    sc:description "> MEDIUM CONFIDENCE! | > HOMEPAGE MISSING! | an ICA-based method for source separation in a low-channel EEG recording | OBJECTIVE:The paper aims to present a method that enables the application of independent component analysis (ICA) to a low-channel EEG recording. The idea behind the method (called moving average ICA or MAICA) is to extend the original low-sensor matrix of signals by applying a set of zero-phase moving average filters to each of the recorded signals. APPROACH:The paper discusses the theoretical background of the MAICA algorithm and verifies its usefulness under three exemplary settings: (i) a pure mathematic system composed of ten source sinusoids; (ii) real EEG data recorded from 64 channels; (iii) real EEG data recorded from five subjects during 200 trials with motor imagery brain-computer interface" ;
-    sc:featureList edam:operation_2422,
-        edam:operation_3891 ;
-    sc:name "MAICA" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31362282" .
-
 <https://bio.tools/MAJIQ-SPEL> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web API",
         "Web service" ;
@@ -42414,20 +34017,8 @@ MAGOS: Model-based Adaptive Grouping of Subclones""" ;
     sc:url "http://majiq.biociphers.org/majiq-spel" ;
     biotools:primaryContact "Yoseph Barash" .
 
-<https://bio.tools/MALDI-2> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3172,
-        edam:topic_3382,
-        edam:topic_3520 ;
-    sc:citation <https://doi.org/10.1038/S41592-019-0536-2>,
-        "pubmed:31451764" ;
-    sc:description "> MEDIUM CONFIDENCE! | > CORRECT NAME OF TOOL COULD ALSO BE 'transmission-mode', 't-MALDI-2', 'post-ionization', 't-MALDI-MSI' | Transmission-mode MALDI-2 mass spectrometry imaging of cells and tissues at subcellular resolution | Platform for metabolite annotation of imaging mass spectrometry data | Your web browser (Chrome 68) is out of date. Update your browser for more security, speed and the best experience on this site. Update browser Ignore | We use cookies to enhance your experience. By continuing to visit this site you agree to our use of cookies. Learn more" ;
-    sc:featureList edam:operation_3553,
-        edam:operation_3704 ;
-    sc:name "MALDI-2" ;
-    sc:url "https://metaspace2020.eu/project/Niehaus-2019-Transmission-MALDI-2" .
-
 <https://bio.tools/MALINI> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3334,
@@ -42447,7 +34038,7 @@ Machine Learning in NeuroImaging (MALINI) is a MATLAB-based toolbox used for fea
     sc:url "https://github.com/pradlanka/malini" .
 
 <https://bio.tools/MANET> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0194,
         edam:topic_0602,
@@ -42466,28 +34057,8 @@ Enzyme recruitment is a fundamental evolutionary driver of modern metabolism. We
     sc:name "MANET" ;
     sc:url "http://manet.illinois.edu" .
 
-<https://bio.tools/MANTA_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3070,
-        edam:topic_3335 ;
-    sc:citation <https://doi.org/10.1016/J.PHRS.2019.104444>,
-        "pubmed:31493513" ;
-    sc:description "> MEDIUM CONFIDENCE! | > HOMEPAGE MISSING! | > NAME (MANTA) SIMILAR TO (PUB. DIFFERENT) bio.tools/manta_sv (Manta), bio.tools/manta (manta) | > CORRECT NAME OF TOOL COULD ALSO BE 'Maastricht Antiarrhythmic Drug Evaluator', 'AADs' | A computational tool for better understanding of antiarrhythmic drugs | Cardiac arrhythmias are a global health burden, contributing significantly to morbidity and mortality worldwide. Despite technological advances in catheter ablation therapy, antiarrhythmic drugs (AADs) remain a cornerstone for the management of cardiac arrhythmias. Experimental and translational studies have shown that commonly used AADs exert multiple effects in the heart, the manifestation of which strongly depends on the exact experimental or clinical conditions. This diversity makes the optimal clinical application of AADs challenging" ;
-    sc:name "MANTA_autogenerated" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31493513" .
-
-<https://bio.tools/MANTIS_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_2885,
-        edam:topic_3360,
-        edam:topic_3379 ;
-    sc:citation <https://doi.org/10.1007/978-1-4939-9773-2_5>,
-        "pubmed:31502149" ;
-    sc:description "> LOW CONFIDENCE! | > NAME EQUAL TO (PUB. DIFFERENT) bio.tools/mantis | > CORRECT NAME OF TOOL COULD ALSO BE 'MSI-H+', 'NGS-powered', 'microsatellite' | Detection of Microsatellite Instability Biomarkers via Next-Generation Sequencing | Microsatellite Analysis for Normal-Tumor InStability | MANTIS (Microsatellite Analysis for Normal-Tumor InStability) is a program developed for detecting microsatellite instability from paired-end BAM files. To perform analysis, the program needs a tumor BAM and a matched normal BAM file (produced using the same pipeline) to determine the instability score between the two samples within the pair. Longer reads (ideally, 100 bp or longer) are recommended, as shorter reads are unlikely to entirely cover the microsatellite loci, and will be discarded after failing the quality control filters" ;
-    sc:license "GPL-3.0" ;
-    sc:name "MANTIS_autogenerated" ;
-    sc:url "https://github.com/OSU-SRLab/MANTIS" .
-
 <https://bio.tools/MAP> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0108,
@@ -42508,7 +34079,7 @@ MAP (Model-based Analysis of Proteomic data), is designed to statistically compa
     sc:url "http://bioinfo.sibs.ac.cn/shaolab/MAP" .
 
 <https://bio.tools/MAPS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3169,
@@ -42530,7 +34101,7 @@ MAP (Model-based Analysis of Proteomic data), is designed to statistically compa
         "Ming Hu" .
 
 <https://bio.tools/MARGO> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3382,
         edam:topic_3500,
@@ -42547,7 +34118,7 @@ Fast object tracking in real time allows convenient tracking of very large numbe
     sc:url "https://github.com/de-Bivort-Lab/margo" .
 
 <https://bio.tools/MARIA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -42567,7 +34138,7 @@ MARIA is a machine learning tool developed by Chen et al. to predict likelihood
     sc:url "https://maria.stanford.edu/" .
 
 <https://bio.tools/MARMoSET> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0634,
@@ -42591,7 +34162,7 @@ MARIA is a machine learning tool developed by Chen et al. to predict likelihood
         "Mario Looso" .
 
 <https://bio.tools/MARSHAL> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0780,
@@ -42616,18 +34187,18 @@ To load the package, you can use the command:""" ;
 
 <https://bio.tools/MASCOT> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ],
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3653" ;
+            sc:name "Mass spectrometry spectra" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0944" ;
-            sc:name "Peptide mass fingerprint" ;
-            sc:sameAs "http://edamontology.org/data_0944" ] ;
+            sc:additionalType "http://edamontology.org/data_0944" ;
+            sc:encodingFormat "http://edamontology.org/format_3834" ;
+            sc:name "Peptide mass fingerprint" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_3681" ;
+            sc:name "Peptide identification" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -42655,7 +34226,7 @@ To load the package, you can use the command:""" ;
     biotools:primaryContact "see publication" .
 
 <https://bio.tools/MASSIF> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0736,
@@ -42676,21 +34247,8 @@ MASSIF is a novel method to improve the performance of existing tool that link m
     sc:name "MASSIF" ;
     sc:url "https://github.com/SchulzLab/MASSIF" .
 
-<https://bio.tools/MATSim> a sc:SoftwareApplication ;
-    sc:citation <https://doi.org/10.20944/PREPRINTS201911.0248.V1> ;
-    sc:description """Assessment of the DRT System Based on an Optimal Routing Strategy.
-
-Demand responsive transport (DRT) is operated according to flexible routes, dispatch intervals, and dynamic demand, is attracting a lot of attention. The biggest characteristic of DRT service is that the vehicle routes and schedules are operated optimally based on real-time travel requests of using passengers without fixed operating schedules. Today, the smart-city era has arrived, particularly because of progress in the wireless communications technology and technology related to location information service and real-time passenger demands and requests, and services that change the vehicles&rsquo; operating schedules in real-time according to dynamic demand have attracted more attention.
-
-||| HOMEPAGE BROKEN!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'DRT'""" ;
-    sc:featureList edam:operation_3891 ;
-    sc:name "MATSim" ;
-    sc:url "http://wwww.matsim.org" .
-
 <https://bio.tools/MAtCHap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0199,
@@ -42707,40 +34265,8 @@ Abstract Background Human genomes are diploid, which means they have two homolog
     sc:name "MAtCHap" ;
     sc:url "https://sourceforge.net/projects/matchap/" .
 
-<https://bio.tools/MBBS> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3418,
-        edam:topic_3419,
-        edam:topic_3421 ;
-    sc:citation <https://doi.org/10.22605/RRH4614>,
-        "pubmed:31400766" ;
-    sc:description "> MEDIUM CONFIDENCE! | > CORRECT NAME OF TOOL COULD ALSO BE 'UAMC Dhaka Bangladesh', 'Perceptions medical students regarding community-based teaching experiences', 'rural', 'rural health' | Perceptions of medical students regarding community-based teaching experiences | Bangladesh Medical & Dental Council | We help to protect patients and improve medical education and practice in the Bangladesh by setting standards for students and doctors. We support them in achieving and exceeding those standards, and take action when they are not met | WELCOME TO OFFICIAL WEBSITE OF BANGLADESH MEDICAL & DENTAL COUNCIL | 25/10/2019 - @notice Result of Registration Qualifying Exam (MBBS & BDS) of October, 2019 have been published" ;
-    sc:name "MBBS" ;
-    sc:url "http://bmdc.org.bd/mbbs-curriculumupdate-2012/" .
-
-<https://bio.tools/MBCT> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0780,
-        edam:topic_3399,
-        edam:topic_3419 ;
-    sc:citation <https://doi.org/10.1136/BMJOPEN-2018-026244>,
-        "pmcid:PMC6738673",
-        "pubmed:31501097" ;
-    sc:description "> MEDIUM CONFIDENCE! | > HOMEPAGE BROKEN! | the accessibility and implementation of an effective depression relapse prevention programme in UK NHS services | OBJECTIVES:Mindfulness-based cognitive therapy (MBCT) is an evidence-based approach for people at risk of depressive relapse to support their long-term recovery. However, despite its inclusion in guidelines, there is an 'implementation cliff'. The study objective was to develop a better explanation of what facilitates MBCT implementation. SETTING:UK primary and secondary care mental health services. DESIGN, PARTICIPANTS AND METHODS:A national two-phase, multi-method qualitative study was conducted, which was conceptually underpinned by the Promoting Action on Research Implementation in Health Services framework. Phase I involved interviews with stakeholders from 40 service providers about current provision of MBCT. Phase II involved 10 purposively sampled case studies to obtain a more detailed understanding of MBCT implementation" ;
-    sc:name "MBCT" ;
-    sc:url "http://www.implementing-mbct.com/).43" .
-
-<https://bio.tools/MBI-C> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3384,
-        edam:topic_3399,
-        edam:topic_3419 ;
-    sc:citation <https://doi.org/10.1017/S1041610219001200>,
-        "pubmed:31526407" ;
-    sc:description "> LOW CONFIDENCE! | > HOMEPAGE MISSING! | > CORRECT NAME OF TOOL COULD ALSO BE 'protect-exeter', 'self-reported', 'self-reported informant-reported MBI-C', 'MBI' | Profile of mild behavioral impairment and factor structure of the Mild Behavioral Impairment Checklist in cognitively normal older adults | OBJECTIVES:In this large population study, we set out to examine the profile of mild behavioral impairment (MBI) by using the Mild Behavioral Impairment Checklist (MBI-C) and to explore its factor structure when employed as a self-reported and informant-rated tool. DESIGN:This was a population-based cohort study. SETTING:Participants were recruited from the Platform for Research Online to Investigate Genetics and Cognition in Aging study (https: www.protect-exeter.org.uk). PARTICIPANTS:A total of 5,742 participant-informant dyads participated in the study. MEASUREMENTS:Both participants and informants completed the MBI-C" ;
-    sc:featureList edam:operation_3436 ;
-    sc:name "MBI-C" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31526407" .
-
 <https://bio.tools/MBITES> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_0621,
@@ -42760,7 +34286,7 @@ bionomics.R: takes output generated by peridomestic-simulation.R and generates o
     sc:url "https://github.com/dd-harp/MBITES/tree/v1.0/MBITES" .
 
 <https://bio.tools/MBKbase_rice> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0625,
@@ -42799,39 +34325,8 @@ Molecular Breeding Knowledgebase (MBKbase) is an integrated database for populat
     sc:softwareHelp <http://www.mbkbase.org/rice/help> ;
     sc:url "http://www.mbkbase.org/rice" .
 
-<https://bio.tools/MCACO-ES> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3063,
-        edam:topic_3376,
-        edam:topic_3403 ;
-    sc:citation <https://doi.org/10.3390/IJERPH16173084>,
-        "pmcid:PMC6747305",
-        "pubmed:31450652" ;
-    sc:description "> MEDIUM CONFIDENCE! | > HOMEPAGE MISSING! | > CORRECT NAME OF TOOL COULD ALSO BE 'M-ACO', 'MSSP', 'Morehouse Choice Accountable Care Organization Education System', 'Medicare beneficiaries' | Morehouse Choice Accountable Care Organization and Education System (MCACO-ES) | Accountable Care Organizations (ACOs) seek sustainable innovation through the testing of new care delivery methods that promote shared goals among value-based health care collaborators. The Morehouse Choice Accountable Care Organization and Education System (MCACO-ES), or (M-ACO) is a physician led integrated delivery model participating in the Medicare Shared Savings Program (MSSP) offered through the Centers for Medicare and Medicaid Services (CMS) Innovation Center" ;
-    sc:featureList edam:operation_0337 ;
-    sc:name "MCACO-ES" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31450652" .
-
-<https://bio.tools/MCDCalc> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0209,
-        edam:topic_2258,
-        edam:topic_3388,
-        edam:topic_3407,
-        edam:topic_3474 ;
-    sc:citation <https://doi.org/10.2174/1568026620666191226092431>,
-        "pubmed:31878856" ;
-    sc:description """Markov Chain Molecular Descriptors Calculator for Medicinal Chemistry.
-
-BACKGROUND:Cheminformatics models are able to predict different outputs (activity, property, chemical reactivity) in single molecules or complex molecular systems (catalyzed organic synthesis, metabolic reactions, nanoparticles, etc.). OBJECTIVE:Cheminformatics prediction of complex catalytic enantioselective reactions is a major goal in organic synthesis research and chemical industry. Markov Chain Molecular Descriptors (MCDs) have been largely used to solve Cheminformatics problems. There are different types of Markov chain descriptors such as Markov-Shannon entropies (Shk), Markov Means (Mk), Markov Moments (πk), etc. However, there are other possible MCDs that have not been used before.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'MCDs', 'MCMD-based', 'BACKGROUND:Cheminformatics', 'Cheminformatics'""" ;
-    sc:featureList edam:operation_3659 ;
-    sc:name "MCDCalc" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31878856" .
-
 <https://bio.tools/MCMap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_2830,
@@ -42846,7 +34341,7 @@ BACKGROUND:Cheminformatics models are able to predict different outputs (activit
     sc:url "http://www.bisb.uni-bayreuth.de/index.php?page=downloads" .
 
 <https://bio.tools/MCOT> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0749,
@@ -42866,7 +34361,7 @@ added a link to the publication · 92cb2e86.
     sc:url "https://gitlab.sysbio.cytogen.ru/academiq/mcot-kernel" .
 
 <https://bio.tools/MCS2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0821,
@@ -42881,13 +34376,13 @@ added a link to the publication · 92cb2e86.
     sc:url "https://github.com/RezaMash/MCS" .
 
 <https://bio.tools/MCScan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "This software provides a clustering module for viewing the relationship of colinear segments in multiple genomes (or heavily redundant genomes). It takes the predicted pairwise segments from dynamic programming (DAGchainer in particular) and then try to build consensus segments from a set of related, overlapping segments." ;
     sc:name "MCScan" ;
     sc:url "https://github.com/tanghaibao/mcscan" .
 
 <https://bio.tools/MCSeEd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0654,
@@ -42907,7 +34402,7 @@ Methods for investigating DNA methylation nowadays either require a reference ge
     sc:url "https://bitbucket.org/capemaster/mcseed/src/master/" .
 
 <https://bio.tools/MCT> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_2640,
@@ -42923,7 +34418,7 @@ Methods for investigating DNA methylation nowadays either require a reference ge
     sc:url "https://github.com/elkebir-group/MCT" .
 
 <https://bio.tools/MD-LOVIs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3068,
@@ -42945,7 +34440,7 @@ MD-LOVIs (acronym for Molecular Descriptors from LOcal Vertex Invariants and Rel
     sc:url "http://tomocomd.com/md-lovis" .
 
 <https://bio.tools/MDCAP> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_0659,
@@ -42969,7 +34464,7 @@ miRNA-disease causal association predictor.
     sc:url "https://github.com/cuppeanuts/MDCAP" .
 
 <https://bio.tools/MDDGlutar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0154,
@@ -42989,7 +34484,7 @@ miRNA-disease causal association predictor.
     sc:url "http://csb.cse.yzu.edu.tw/MDDGlutar/" .
 
 <https://bio.tools/MDFPtools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0176,
         edam:topic_2258,
@@ -43013,7 +34508,7 @@ Visit our documentation to learn details about installation, example workflow an
     sc:url "https://github.com/rinikerlab/mdfptools/" .
 
 <https://bio.tools/MDMS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0176,
@@ -43037,18 +34532,18 @@ The idea behind MDMS design is that the beginnings should be easy - not exhausti
 
 <https://bio.tools/MDPBiome> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3917" ;
-            sc:name "Count matrix" ;
-            sc:sameAs "http://edamontology.org/data_3917" ] ;
+            sc:additionalType "http://edamontology.org/data_3917" ;
+            sc:encodingFormat "http://edamontology.org/format_3746" ;
+            sc:name "Count matrix" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0950" ;
-            sc:name "Mathematical model" ;
-            sc:sameAs "http://edamontology.org/data_0950" ],
+            sc:additionalType "http://edamontology.org/data_0950" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "Mathematical model" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3905" ;
-            sc:name "Histogram" ;
-            sc:sameAs "http://edamontology.org/data_3905" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3905" ;
+            sc:encodingFormat "http://edamontology.org/format_3508" ;
+            sc:name "Histogram" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0092,
@@ -43076,16 +34571,8 @@ The idea behind MDMS design is that the beginnings should be easy - not exhausti
     sc:url "https://github.com/beatrizgj/MDPbiome" ;
     biotools:primaryContact <https://orcid.org/0000-0002-8129-6506> .
 
-<https://bio.tools/MDRCupid> a sc:SoftwareApplication ;
-    sc:citation <https://doi.org/10.3233/SHTI190189>,
-        "pubmed:31437891" ;
-    sc:description "> MEDIUM CONFIDENCE! | > HOMEPAGE MISSING! | A Configurable Metadata Matching Toolbox | Metadata matching is an important step towards integrating heterogeneous healthcare data and facilitating secondary use. MDRCupid supports this step by providing a configurable metadata matching toolbox incorporating lexical and statistical matching approaches. The matching configuration can be adapted to different purposes by manually selecting algorithms and their weights or by using the optimization module with corresponding training data. The toolbox can be accessed as a web service via programming or user interface. For every selected metadata element, the metadata elements with the highest similarity scores are presented to the user and can be manually confirmed via the user interface, while the programming interface uses a similarity threshold to select corresponding elements. An HL7 FHIR ConceptMap is used to save the matches" ;
-    sc:featureList edam:operation_2422 ;
-    sc:name "MDRCupid" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31437891" .
-
 <https://bio.tools/MDiNE> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3170,
@@ -43101,33 +34588,8 @@ The idea behind MDMS design is that the beginnings should be easy - not exhausti
     sc:name "MDiNE" ;
     sc:url "https://github.com/kevinmcgregor/mdine" .
 
-<https://bio.tools/MEDT> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3384,
-        edam:topic_3794 ;
-    sc:citation <https://doi.org/10.3389/FPSYG.2019.01955>,
-        "pmcid:PMC6736617",
-        "pubmed:31551857" ;
-    sc:description "> MEDIUM CONFIDENCE! | > HOMEPAGE MISSING! | > CORRECT NAME OF TOOL COULD ALSO BE 'emotion', 'Musical Emotion', 'musical', 'Musical Emotion Discrimination Task' | A New Measure for Assessing the Ability to Discriminate Emotions in Music | Previous research has shown that levels of musical training and emotional engagement with music are associated with an individual's ability to decode the intended emotional expression from a music performance. The present study aimed to assess traits and abilities that might influence emotion recognition, and to create a new test of emotion discrimination ability. The first experiment investigated musical features that influenced the difficulty of the stimulus items (length, type of melody, instrument, target- comparison emotion) to inform the creation of a short test of emotion discrimination. The second experiment assessed the contribution of individual differences measures of emotional and musical abilities as well as psychoacoustic abilities" ;
-    sc:name "MEDT" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31551857" .
-
-<https://bio.tools/MEG> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3384 ;
-    sc:citation <https://doi.org/10.1101/795799> ;
-    sc:description """Comparison of beamformer implementations for MEG source localization.
-
-Abstract Beamformers are applied for estimating spatiotemporal characteristics of neuronal sources underlying measured MEG EEG signals. Several MEG analysis toolboxes include an implementation of a linearly constrained minimum-variance (LCMV) beamformer. However, differences in implementations and in their results complicate the selection and application of beamformers and may hinder their wider adoption in research and clinical use. Additionally, combinations of different MEG sensor types (such as magnetometers and planar gradiometers) and application of preprocessing methods for interference suppression, such as signal space separation (SSS), can affect the results in different ways for different implementations.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'LCMV', 'beamformer', 'LCMV beamformer', 'Beamformers'""" ;
-    sc:featureList edam:operation_0337,
-        edam:operation_3435 ;
-    sc:name "MEG" ;
-    sc:url "https://doi.org/10.1101/795799" .
-
 <https://bio.tools/MEPSAnd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0166,
         edam:topic_0602 ;
@@ -43140,7 +34602,7 @@ Abstract Beamformers are applied for estimating spatiotemporal characteristics o
     sc:url "http://bioweb.cbm.uam.es/software/MEPSAnd/" .
 
 <https://bio.tools/MERCAT> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0625,
@@ -43158,7 +34620,7 @@ Molecular epidemiology uses genetic information from bacterial isolates to shed
     sc:url "https://github.com/zaandahl/mercat" .
 
 <https://bio.tools/MERLoT> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3170,
@@ -43175,7 +34637,7 @@ Molecular epidemiology uses genetic information from bacterial isolates to shed
     sc:url "https://github.com/soedinglab/merlot" .
 
 <https://bio.tools/MERMAID> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0176,
         edam:topic_0736,
@@ -43198,7 +34660,7 @@ Molecular epidemiology uses genetic information from bacterial isolates to shed
     biotools:primaryContact "Alejandro Giorgetti" .
 
 <https://bio.tools/MESSA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0623,
@@ -43212,7 +34674,7 @@ Molecular epidemiology uses genetic information from bacterial isolates to shed
     sc:url "http://prodata.swmed.edu/MESSA/MESSA.cgi" .
 
 <https://bio.tools/MESSAR_MEtabolite_SubStructure_Auto-Recommender> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description """Despite the increasing importance of non-targeted metabolomics to answer various
 life science questions, extracting biochemically relevant information from metabolomics
 spectral data is still an incompletely solved problem. 
@@ -43225,7 +34687,7 @@ partial identification of unknown unknowns.""" ;
     sc:url "https://messar.biodatamining.be" .
 
 <https://bio.tools/METACLUSTER_R> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -43244,31 +34706,8 @@ partial identification of unknown unknowns.""" ;
     sc:url "https://github.com/mbanf/METACLUSTER" ;
     biotools:primaryContact "EducatedGuess.ai" .
 
-<https://bio.tools/METHODSSNPstats> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0634,
-        edam:topic_2885,
-        edam:topic_3335 ;
-    sc:citation <https://doi.org/10.1097/MCA.0000000000000780>,
-        "pubmed:31567371" ;
-    sc:description """Interaction between eNOS gene polymorphism and current smoking on susceptibility to coronary heart disease in Chinese people.
-
-Programa d'Analítica de Dades en Oncologia.
-
-Programa d’Analítica de Dades en Oncologia.
-
-El Programa d’Analítica de Dades en Oncologia (PADO) és un grup de recerca que pretén identificar i validar biomarcadors moleculars en càncer, tant de diagnòstic i pronòstic, com de resposta a tractament. També col·labora amb altres grups de recerca de la institució en projectes relacionats amb biomarcadors de el càncer.
-
-Centra la seva recerca en l’epidemiologia genètica, el diagnòstic molecular de el càncer, en els marcadors de pronòstic i predicció de resposta terapèutica i en la identificació de noves dianes terapèutiques.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'SNPs' (bio.tools/SNPs)""" ;
-    sc:featureList edam:operation_0308,
-        edam:operation_3196,
-        edam:operation_3659 ;
-    sc:name "METHODS:SNPstats" ;
-    sc:url "http://bioinfo.iconcologia.net/SNPstats" .
-
 <https://bio.tools/MEXCOwalk> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0199,
@@ -43281,35 +34720,8 @@ Centra la seva recerca en l’epidemiologia genètica, el diagnòstic molecular
     sc:name "MEXCOwalk" ;
     sc:url "https://github.com/abu-compbio/MEXCOwalk" .
 
-<https://bio.tools/MFAC> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0593,
-        edam:topic_0780 ;
-    sc:citation <https://doi.org/10.1007/S11356-019-06173-Z>,
-        "pubmed:31428965" ;
-    sc:description "> MEDIUM CONFIDENCE! | > HOMEPAGE MISSING! | Removal of aqueous fluoroquinolones with multi-functional activated carbon (MFAC) derived from recycled long-root Eichhornia crassipes | Fluoroquinolones (FQs) occur broadly in natural media due to its extensive use, and it has systematic effects on our ecosystem and human immunity. In this study, long-root Eichhornia crassipes was reclaimed as a multi-functional activated carbon (MFAC) to remove fluoroquinolones (FQs) from contaminated water. To get insight into the adsorption mechanism, multiple measurements, including FTIR and XPS analyses, were employed to investigate the adsorption processes of ciprofloxacin and norfloxacin as well as the experiments of effect of exogenous factors on adsorption performances. The results confirmed that the adsorption of FQs by MFAC was mainly attributed to the electrostatic interaction, hydrogen bond interaction, and electronic-donor-acceptor (EDA) interaction" ;
-    sc:featureList edam:operation_3629 ;
-    sc:name "MFAC" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31428965" .
-
-<https://bio.tools/MFPD> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0605,
-        edam:topic_2269,
-        edam:topic_3300 ;
-    sc:citation <https://doi.org/10.1371/JOURNAL.PONE.0223785>,
-        "pmcid:PMC6818956",
-        "pubmed:31661497" ;
-    sc:description """Robust, real-time generic detector based on a multi-feature probabilistic method.
-
-Robust, real-time event detection from physiological signals acquired during long-term ambulatory monitoring still represents a major challenge for highly-artifacted signals. In this paper, we propose an original and generic multi-feature probabilistic detector (MFPD) and apply it to real-time QRS complex detection under noisy conditions. The MFPD method calculates a binary Bayesian probability for each derived feature and makes a centralized fusion, using the Kullback-Leibler divergence. The method is evaluated on two ECG databases: 1) the MIT-BIH arrhythmia database from Physionet containing clean ECG signals, 2) a benchmark noisy database created by adding noise recordings of the MIT-BIH noise stress test database, also from Physionet, to the MIT-BIH arrhythmia database.
-
-||| HOMEPAGE MISSING!""" ;
-    sc:featureList edam:operation_3435,
-        edam:operation_3695 ;
-    sc:name "MFPD" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31661497" .
-
 <https://bio.tools/MG-RAST_API_explorer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0637,
         edam:topic_0769,
@@ -43340,7 +34752,7 @@ workflow and resource management system for bioinformatics data analysis.""" ;
     sc:url "https://explorer.mg-rast.org/" .
 
 <https://bio.tools/MGERT> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0769,
@@ -43363,7 +34775,7 @@ workflow and resource management system for bioinformatics data analysis.""" ;
     biotools:primaryContact <https://orcid.org/0000-0002-6329-2421> .
 
 <https://bio.tools/MGLEX> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3174,
         edam:topic_3297,
@@ -43390,26 +34802,28 @@ We recommend to create a Python virtual installation enviroment for MGLEX. In or
     sc:url "http://pypi.python.org/pypi/mglex/" .
 
 <https://bio.tools/MGMM> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_2885 ;
-    sc:citation <https://doi.org/10.1101/2019.12.20.884551> ;
-    sc:description """An R package for fitting Gaussian Mixture Models on Incomplete Genomics Data.
-
-Missingness Aware Gaussian Mixture Models.
-
-Selecting the Number of Clusters.
-
-This package implements clustering of multivariate normal random vectors with missing elements. Clustering is achieved by fitting a Gaussian Mixture Model (GMM). The parameters are estimated by maximum likelihood, using the Expectation Maximization (EM) algorithm. Our implementation extends existing methods by allowing for missingness in the input data. The EM algorithm addresses missingness of both the cluster assignments and the vector components. The output includes the marginal cluster membership probabilities; the mean and covariance of each cluster; the density of each mixture component evaluated on the observations; the posterior probabilities of cluster membership; maximum a posteriori cluster assignments; and a completed version of the input data, with missing values replaced by their posterior expectations""" ;
+    sc:citation <https://doi.org/10.1186/s12859-022-04740-9>,
+        "pmcid:PMC9158227",
+        "pubmed:35650523" ;
+    sc:description "Parameter estimation and classification for Gaussian Mixture Models (GMMs) in the presence of missing data." ;
     sc:featureList edam:operation_3432,
         edam:operation_3435,
         edam:operation_3557 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
     sc:name "MGMM" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://cran.r-project.org/web/packages/MGMM/MGMM.pdf> ;
     sc:url "https://github.com/zrmacc/MGMM" .
 
 <https://bio.tools/MGOB> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0102,
@@ -43424,7 +34838,7 @@ This package implements clustering of multivariate normal random vectors with mi
     sc:url "http://mgob.ucd.ie" .
 
 <https://bio.tools/MGnify> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0769,
@@ -43443,7 +34857,7 @@ MGnify (http: www.ebi.ac.uk metagenomics) provides a free to use platform for th
     sc:url "http://www.ebi.ac.uk/metagenomics" .
 
 <https://bio.tools/MHCII> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0749,
@@ -43467,7 +34881,7 @@ or as whitespace-separated sequences.""" ;
     sc:url "http://tools.iedb.org/mhci/" .
 
 <https://bio.tools/MHCSeqNet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0602,
@@ -43489,7 +34903,7 @@ or as whitespace-separated sequences.""" ;
     biotools:primaryContact "Computational Molecular Biology Group, Chulalongkorn University" .
 
 <https://bio.tools/MHCquant> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -43507,43 +34921,8 @@ MHCquant: Identify and quantify peptides from mass spectrometry raw data.""" ;
     sc:name "MHCquant" ;
     sc:url "https://www.openms.de/mhcquant/" .
 
-<https://bio.tools/MHPCI> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3068,
-        edam:topic_3305,
-        edam:topic_3376,
-        edam:topic_3419 ;
-    sc:citation <https://doi.org/10.1017/S2045796019000787>,
-        "pubmed:31839026" ;
-    sc:description """Development and validation of the mental health professional culture inventory.
-
-AIMS:No instrument has been developed to explicitly assess the professional culture of mental health workers interacting with severely mentally ill people in publicly or privately run mental health care services. Because of theoretical and methodological concerns, we designed a self-administered questionnaire to assess the professional culture of mental health services workers. The study aims to validate this tool, named the Mental Health Professional Culture Inventory (MHPCI). The MHPCI adopts the notion of 'professional culture' as a hybrid construct between the individual and the organisational level that could be directly associated with the professional practices of mental health workers.
-
-||| HOMEPAGE MISSING!""" ;
-    sc:featureList edam:operation_2428,
-        edam:operation_3891 ;
-    sc:name "MHPCI" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31839026" .
-
-<https://bio.tools/MIA-Sig> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0102,
-        edam:topic_0749,
-        edam:topic_3176,
-        edam:topic_3656 ;
-    sc:citation <https://doi.org/10.1186/S13059-019-1868-Z>,
-        "pmcid:PMC6876102",
-        "pubmed:31767038" ;
-    sc:description """multiplex chromatin interaction analysis by signal processing and statistical algorithms.
-
-The single-molecule multiplex chromatin interaction data are generated by emerging 3D genome mapping technologies such as GAM, SPRITE, and ChIA-Drop. These datasets provide insights into high-dimensional chromatin organization, yet introduce new computational challenges. Thus, we developed MIA-Sig, an algorithmic solution based on signal processing and information theory. We demonstrate its ability to de-noise the multiplex data, assess the statistical significance of chromatin complexes, and identify topological domains and frequent inter-domain contacts. On chromatin immunoprecipitation (ChIP)-enriched data, MIA-Sig can clearly distinguish the protein-associated interactions from the non-specific topological domains. Together, MIA-Sig represents a novel algorithmic framework for multiplex chromatin interaction analysis.
-
-||| HOMEPAGE MISSING!""" ;
-    sc:featureList edam:operation_3222,
-        edam:operation_3435 ;
-    sc:name "MIA-Sig" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31767038" .
-
 <https://bio.tools/MIAmS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_2885,
@@ -43560,7 +34939,7 @@ MIAmS: Microsatellites Instability by AMplicon Sequencing.""" ;
     sc:url "https://github.com/bialimed/miams" .
 
 <https://bio.tools/MIAmaxent> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0605,
         edam:topic_0610,
@@ -43588,7 +34967,7 @@ Use this site to download Maxent software for modeling species niches and distri
     sc:url "https://biodiversityinformatics.amnh.org/open_source/maxent/" .
 
 <https://bio.tools/MIC_Locator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0140,
@@ -43608,7 +34987,7 @@ The dataset for MIC_Locator can be downloaded from the website (https://pan.baid
     sc:url "https://github.com/ProteinLocator/MIC_Locator" .
 
 <https://bio.tools/MIENTURNET> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0605,
@@ -43626,24 +35005,8 @@ BACKGROUND:miRNAs regulate the expression of several genes with one miRNA able t
     sc:name "MIENTURNET" ;
     sc:url "http://userver.bio.uniroma1.it/apps/mienturnet/" .
 
-<https://bio.tools/MIGOU> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3068,
-        edam:topic_3318 ;
-    sc:citation <https://doi.org/10.3390/S19224983>,
-        "pmcid:PMC6891619",
-        "pubmed:31731745" ;
-    sc:description """A Low-Power Experimental Platform with Programmable Logic Resources and Software-Defined Radio Capabilities.
-
-The increase in the number of mobile and Internet of Things (IoT) devices, along with the demands of new applications and services, represents an important challenge in terms of spectral coexistence. As a result, these devices are now expected to make an efficient and dynamic use of the spectrum, and to provide processed information instead of simple raw sensor measurements. These communication and processing requirements have direct implications on the architecture of the systems. In this work, we present MIGOU, a wireless experimental platform that has been designed to address these challenges from the perspective of resource-constrained devices, such as wireless sensor nodes or IoT end-devices.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'wireless', 'system-on-a-chip'""" ;
-    sc:name "MIGOU" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31731745" .
-
 <https://bio.tools/MIGRATE> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_3056,
@@ -43666,7 +35029,7 @@ The increase in the number of mobile and Internet of Things (IoT) devices, along
     sc:url "https://peterbeerli.com/migrate-html5/index.html" .
 
 <https://bio.tools/MILAMP> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_3382,
@@ -43681,7 +35044,7 @@ The increase in the number of mobile and Internet of Things (IoT) devices, along
     sc:url "http://faculty.pieas.edu.pk/fayyaz/software.html#MILAMP" .
 
 <https://bio.tools/MIMIC-CXR> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3384,
         edam:topic_3452,
@@ -43700,7 +35063,7 @@ MIMIC-CXR: A large publicly available database of labeled chest radiographs. Joh
     sc:url "https://mimic-cxr.mit.edu" .
 
 <https://bio.tools/MIND> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3170,
@@ -43715,7 +35078,7 @@ MIMIC-CXR: A large publicly available database of labeled chest radiographs. Joh
     sc:url "https://github.com/randel/MIND" .
 
 <https://bio.tools/MINERVA_Platform> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3342,
         edam:topic_3391 ;
@@ -43744,7 +35107,7 @@ MINERVA is a webservice using the Java Server Faces 2 technology. The server sid
     sc:url "https://minerva-web.lcsb.uni.lu" .
 
 <https://bio.tools/MINES> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0203,
@@ -43768,7 +35131,7 @@ python cDNA_MINES.py --fraction_modified output_filename.fraction_modified_reads
     sc:url "https://github.com/YeoLab/MINES.git" .
 
 <https://bio.tools/MIRIA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0659,
@@ -43788,7 +35151,7 @@ BACKGROUND:Adenosine-to-inosine RNA editing can markedly diversify the transcrip
     sc:url "https://mammal.deepomics.org/" .
 
 <https://bio.tools/MIRKB> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3300,
@@ -43810,7 +35173,7 @@ MIRKB (the Myocardial Infarction Risk Knowledge Base) is a database that collect
     sc:url "http://sysbio.org.cn/MIRKB/" .
 
 <https://bio.tools/MIRUReader> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0625,
@@ -43831,59 +35194,8 @@ Identify 24-locus MIRU-VNTR for Mycobacterium tuberculosis complex (MTBC) direct
     sc:name "MIRUReader" ;
     sc:url "https://github.com/phglab/MIRUReader" .
 
-<https://bio.tools/MISS> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0102,
-        edam:topic_3170,
-        edam:topic_3304,
-        edam:topic_3334,
-        edam:topic_3382 ;
-    sc:citation <https://doi.org/10.1101/833566> ;
-    sc:description """A novel pipeline for quantitative mapping of diverse cell types across the murine brain.
-
-ABSTRACT The advent of increasingly sophisticated imaging platforms has allowed for the visualization of the murine nervous system at single-cell resolution. However, current cell counting methods compromise on either the ability to map a large number of different cell types, or spatial coverage, and therefore whole-brain quantification of finely resolved neural cell subtypes remains elusive. Here we present a comprehensive and novel computational pipeline called Matrix Inversion and Subset Selection (MISS) that aims to fill this gap in knowledge and has the ability to infer counts of diverse collections of neural cell types at sub-millimeter resolution using a combination of single-cell RNAseq and in situ hybridization datasets.
-
-||| HOMEPAGE MISSING!""" ;
-    sc:featureList edam:operation_0337,
-        edam:operation_3463,
-        edam:operation_3799 ;
-    sc:name "MISS" ;
-    sc:url "https://doi.org/10.1101/833566" .
-
-<https://bio.tools/MISS-D> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3316,
-        edam:topic_3365,
-        edam:topic_3384 ;
-    sc:citation <https://doi.org/10.1016/J.CMPB.2019.105189>,
-        "pubmed:31759298" ;
-    sc:description """A fast and scalable framework of medical image storage service based on distributed file system.
-
-Background and Objective Processing of medical imaging big data is deeply challenging due to the size of data, computational complexity, security storage and inherent privacy issues. Traditional picture archiving and communication system, which is an imaging technology used in the healthcare industry, generally uses centralized high performance disk storage arrays in the practical solutions. The existing storage solutions are not suitable for the diverse range of medical imaging big data that needs to be stored reliably and accessed in a timely manner. The economical solution is emerging as the cloud computing which provides scalability, elasticity, performance and better managing cost. Cloud based storage architecture for medical imaging big data has attracted more and more attention in industry and academia.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'framework'""" ;
-    sc:name "MISS-D" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31759298" .
-
-<https://bio.tools/MITF-low_melanomas_MITF-independent> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0634,
-        edam:topic_0749,
-        edam:topic_3308 ;
-    sc:citation <https://doi.org/10.1158/0008-5472.CAN-19-0037>,
-        "pubmed:31582381" ;
-    sc:description """Zebrafish MITF-Low Melanoma Subtype Models Reveal Transcriptional Subclusters and MITF-Independent Residual Disease.
-
-The melanocyte-inducing transcription factor (MITF)-low melanoma transcriptional signature is predictive of poor outcomes for patients, but little is known about its biological significance, and animal models are lacking. Here, we used zebrafish genetic models with low activity of Mitfa (MITF-low) and established that the MITF-low state is causal of melanoma progression and a predictor of melanoma biological subtype. MITF-low zebrafish melanomas resembled human MITF-low melanomas and were enriched for stem and invasive (mesenchymal) gene signatures.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'MITF-independent', 'MITF-low melanomas', 'melanomas MITF-independent', 'melanomas'""" ;
-    sc:featureList edam:operation_3659 ;
-    sc:name "MITF-low melanomas MITF-independent" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31582381" .
-
 <https://bio.tools/MITK-ModelFit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3375,
         edam:topic_3384,
@@ -43902,7 +35214,7 @@ The melanocyte-inducing transcription factor (MITF)-low melanoma transcriptional
     sc:url "http://mitk.org/wiki/MITK-ModelFit" .
 
 <https://bio.tools/MITRE> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_3474,
@@ -43919,7 +35231,7 @@ The melanocyte-inducing transcription factor (MITF)-low melanoma transcriptional
     sc:url "https://github.com/gerberlab/mitre/" .
 
 <https://bio.tools/MIXR> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3293,
         edam:topic_3308,
@@ -43943,7 +35255,7 @@ The melanocyte-inducing transcription factor (MITF)-low melanoma transcriptional
         "William H. Press" .
 
 <https://bio.tools/MKpLMM> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3384,
@@ -43957,7 +35269,7 @@ MOTIVATION:The use of human genome discoveries and other established factors to
     sc:url "https://github.com/YaluWen/OmicPred" .
 
 <https://bio.tools/ML-Force> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0153,
         edam:topic_0176,
@@ -43975,7 +35287,7 @@ ML-Force source code added · 1e971b94.""" ;
     sc:url "https://git.informatik.uni-rostock.de/mosi/ml-force-publication" .
 
 <https://bio.tools/ML-morph> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_3298,
@@ -43986,7 +35298,7 @@ ML-Force source code added · 1e971b94.""" ;
     sc:url "https://github.com/agporto/ml-morph" .
 
 <https://bio.tools/MLC> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3170,
@@ -44007,7 +35319,7 @@ ML-Force source code added · 1e971b94.""" ;
     biotools:primaryContact "Stavros Makrodimitris" .
 
 <https://bio.tools/MLCS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0157,
@@ -44024,7 +35336,7 @@ This is a fast MLCS algorithm for DNA sequence""" ;
     sc:url "https://github.com/liusen1006/MLCS" .
 
 <https://bio.tools/MLDSP-GUI> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0637,
         edam:topic_0654,
@@ -44037,7 +35349,7 @@ This is a fast MLCS algorithm for DNA sequence""" ;
     sc:url "https://sourceforge.net/projects/mldsp-gui/" .
 
 <https://bio.tools/MLM> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0593,
         edam:topic_0749 ;
@@ -44054,21 +35366,8 @@ This is a fast MLCS algorithm for DNA sequence""" ;
         "Windows" ;
     sc:url "https://figshare.com/articles/MLM_Algorithm/7393517/1" .
 
-<https://bio.tools/MLMDA> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0634,
-        edam:topic_0659,
-        edam:topic_3474 ;
-    sc:citation <https://doi.org/10.1186/S12967-019-2009-X>,
-        "pmcid:PMC6688360",
-        "pubmed:31395072" ;
-    sc:description "> HOMEPAGE MISSING! | a machine learning approach to predict and validate MicroRNA-disease associations by integrating of heterogenous information sources | BACKGROUND:Emerging evidences show that microRNA (miRNA) plays an important role in many human complex diseases. However, considering the inherent time-consuming and expensive of traditional in vitro experiments, more and more attention has been paid to the development of efficient and feasible computational methods to predict the potential associations between miRNA and disease. METHODS:In this work, we present a machine learning-based model called MLMDA for predicting the association of miRNAs and diseases. More specifically, we first use the k-mer sparse matrix to extract miRNA sequence information, and combine it with miRNA functional similarity, disease semantic similarity and Gaussian interaction profile kernel similarity information" ;
-    sc:featureList edam:operation_0463,
-        edam:operation_3792 ;
-    sc:name "MLMDA" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31395072" .
-
 <https://bio.tools/MLML2R> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3295,
         edam:topic_3518,
@@ -44088,30 +35387,8 @@ This is a fast MLCS algorithm for DNA sequence""" ;
     sc:url "https://cran.r-project.org/package=MLML2R" ;
     biotools:primaryContact "Samara Kiihl" .
 
-<https://bio.tools/MLST_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_2269,
-        edam:topic_3174,
-        edam:topic_3324,
-        edam:topic_3673 ;
-    sc:citation <https://doi.org/10.1186/S12859-019-3204-8>,
-        "pmcid:PMC6915855",
-        "pubmed:31842753" ;
-    sc:description """Deconvoluting the diversity of within-host pathogen strains in a multi-locus sequence typing framework.
-
-Deconvoluting the Diversity of Within-host Pathogen Strain in a MLST Framework.
-
-||| NAME EQUAL TO (PUB. DIFFERENT) bio.tools/mlst.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'burgdorferi', 'Borrelia', 'within-host', 'Borrelia burgdorferi'""" ;
-    sc:featureList edam:operation_0487,
-        edam:operation_3227,
-        edam:operation_3629,
-        edam:operation_3840 ;
-    sc:name "MLST_autogenerated" ;
-    sc:url "https://github.com/WGS-TB/MLST" .
-
 <https://bio.tools/MLSTar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0199,
@@ -44136,7 +35413,7 @@ Note: cgMLST and wgMLST are not yet fully supported since the RESTful API interp
     sc:url "http://github.com/iferres/MLSTar" .
 
 <https://bio.tools/MLVAType> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0632,
@@ -44157,29 +35434,8 @@ regex (https://launchpad.net/ubuntu/+archive/primary/+files/python-regex_0.1.201
     sc:name "MLVAType" ;
     sc:url "https://github.com/dpchris/MLVA" .
 
-<https://bio.tools/MLW-gcForest> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_2640,
-        edam:topic_3170,
-        edam:topic_3474,
-        edam:topic_3518 ;
-    sc:citation <https://doi.org/10.1186/S12859-019-3172-Z>,
-        "pmcid:PMC6857238",
-        "pubmed:31726986" ;
-    sc:description """a multi-weighted gcForest model towards the staging of lung adenocarcinoma based on multi-modal genetic data.
-
-BACKGROUND:Lung cancer is one of the most common types of cancer, among which lung adenocarcinoma accounts for the largest proportion. Currently, accurate staging is a prerequisite for effective diagnosis and treatment of lung adenocarcinoma. Previous research has used mainly single-modal data, such as gene expression data, for classification and prediction. Integrating multi-modal genetic data (gene expression RNA-seq, methylation data and copy number variation) from the same patient provides the possibility of using multi-modal genetic data for cancer prediction. A new machine learning method called gcForest has recently been proposed. This method has been proven to be suitable for classification in some fields.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'gcForest'""" ;
-    sc:featureList edam:operation_2495,
-        edam:operation_3435,
-        edam:operation_3802 ;
-    sc:name "MLW-gcForest" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31726986" .
-
 <https://bio.tools/ML_Repo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3174,
         edam:topic_3474,
@@ -44201,7 +35457,7 @@ BACKGROUND:Lung cancer is one of the most common types of cancer, among which lu
     biotools:primaryContact <https://orcid.org/0000-0002-8205-2511> .
 
 <https://bio.tools/MLatom> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3314,
         edam:topic_3474,
@@ -44220,7 +35476,7 @@ BACKGROUND:Lung cancer is one of the most common types of cancer, among which lu
     biotools:primaryContact "Dr. Pavlo O. Dral" .
 
 <https://bio.tools/MM-WHS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3335,
         edam:topic_3384,
@@ -44235,7 +35491,7 @@ BACKGROUND:Lung cancer is one of the most common types of cancer, among which lu
     sc:url "http://www.sdspeople.fudan.edu.cn/zhuangxiahai/0/mmwhs/" .
 
 <https://bio.tools/MM3> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3382,
@@ -44260,7 +35516,7 @@ The name Piazza comes from the Italian word for plaza--a common city square wher
     sc:url "https://piazza.com/ucsd/fall2019/mm3" .
 
 <https://bio.tools/MMCL> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0593,
         edam:topic_3315,
@@ -44289,98 +35545,30 @@ Designing MATLAB-streamlined MC-based analysis using MCXLAB and MMCLAB.""" ;
     sc:name "MMCL" ;
     sc:url "http://mcx.space/#mmc" .
 
-<https://bio.tools/MMCL_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3315,
-        edam:topic_3384,
-        edam:topic_3398,
-        edam:topic_3452 ;
-    sc:citation <https://doi.org/10.1117/1.JBO.24.11.115002>,
-        "pmcid:PMC6863969",
-        "pubmed:31746154" ;
-    sc:description """Graphics processing unit-accelerated mesh-based Monte Carlo photon transport simulations.
-
-===============================================================================.
-
-= Mesh-based Monte Carlo (MMC) =.
-
-= Supporting both OpenCL and Multi-threading with SSE4 =.
-
-A GPU-accelerated photon transport simulator.
-
-Download v2019.4 or Nightly-build.
-
-"mmc -L" or "mmclab('gpuinfo')" to list).
-
-Designing MATLAB-streamlined MC-based analysis using MCXLAB and MMCLAB.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'MMC', 'MCs MMC', 'MMC can', 'mesh-based Monte Carlo'""" ;
-    sc:featureList edam:operation_0337,
-        edam:operation_3431,
-        edam:operation_3435 ;
-    sc:name "MMCL_autogenerated" ;
-    sc:url "http://mcx.space/#mmc" .
-
-<https://bio.tools/MMDB_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0219,
-        edam:topic_0625,
-        edam:topic_0659,
-        edam:topic_3174,
-        edam:topic_3697 ;
-    sc:citation <https://doi.org/10.3390/MICROORGANISMS7110480>,
-        "pmcid:PMC6920994",
-        "pubmed:31652812" ;
-    sc:description """A Curated Database with Taxonomic Profiling of the Healthy Mouse Gastrointestinal Microbiome.
-
-Murine microbiome database (MMDB) contains 16S rRNA gene-based microbiome taxonomic profiles of the healthy mouse gut microbiota with manually curated metadata.
-
-Identify frequently found bacterial species in the gastrointestinal tract of healthy laboratory mice.
-
-||| NAME EQUAL TO (PUB. DIFFERENT) bio.tools/mmdb.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'Introducing Murine Microbiome Database'""" ;
-    sc:featureList edam:operation_3196,
-        edam:operation_3460,
-        edam:operation_3797 ;
-    sc:name "MMDB_autogenerated" ;
-    sc:url "http://leb.snu.ac.kr/mmdb/" .
-
-<https://bio.tools/MML_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0632,
-        edam:topic_2269 ;
-    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTZ368>,
-        "pmcid:PMC6612809",
-        "pubmed:31510703" ;
-    sc:description "> LOW CONFIDENCE! | > NAME EQUAL TO (PUB. DIFFERENT) bio.tools/mml | > CORRECT NAME OF TOOL COULD ALSO BE 'seqmmligner', 'IMPLEMENTATION:The' | Statistical compression of protein sequences and inference of marginal probability landscapes over competing alignments using finite state models and Dirichlet priors | Minimum Message Length (MML) based aligner of protein (amino acid) sequences | Dependencies: GNUMake or equivalent. A modern C++ compiler. seqMMLigner is known to build with g++ (GCC) >= 4.1.2. If these dependencies are met, follow these instructions:" ;
-    sc:featureList edam:operation_3798 ;
-    sc:name "MML_autogenerated" ;
-    sc:url "http://lcb.infotech.monash.edu.au/seqmmligner" .
-
 <https://bio.tools/MMseqs2> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0850" ;
-            sc:name "Sequence set" ;
-            sc:sameAs "http://edamontology.org/data_0850" ],
+            sc:additionalType "http://edamontology.org/data_0850" ;
+            sc:encodingFormat "http://edamontology.org/format_2182" ;
+            sc:name "Sequence set" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0850" ;
-            sc:name "Sequence set" ;
-            sc:sameAs "http://edamontology.org/data_0850" ],
+            sc:additionalType "http://edamontology.org/data_0850" ;
+            sc:encodingFormat "http://edamontology.org/format_2182" ;
+            sc:name "Sequence set" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0850" ;
-            sc:name "Sequence set" ;
-            sc:sameAs "http://edamontology.org/data_0850" ] ;
+            sc:additionalType "http://edamontology.org/data_0850" ;
+            sc:encodingFormat "http://edamontology.org/format_2182" ;
+            sc:name "Sequence set" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1235" ;
-            sc:name "Sequence cluster" ;
-            sc:sameAs "http://edamontology.org/data_1235" ],
+            sc:additionalType "http://edamontology.org/data_3028" ;
+            sc:name "Taxonomy" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0857" ;
-            sc:name "Sequence search results" ;
-            sc:sameAs "http://edamontology.org/data_0857" ],
+            sc:additionalType "http://edamontology.org/data_0857" ;
+            sc:encodingFormat "http://edamontology.org/format_1333" ;
+            sc:name "Sequence search results" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3028" ;
-            sc:name "Taxonomy" ;
-            sc:sameAs "http://edamontology.org/data_3028" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1235" ;
+            sc:name "Sequence cluster" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0078,
@@ -44414,7 +35602,7 @@ MMseqs2 includes Linclust, the first clustering algorithm whose runtime scales l
     biotools:primaryContact "Söding Lab" .
 
 <https://bio.tools/MNE-Python> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3384,
@@ -44428,7 +35616,7 @@ MMseqs2 includes Linclust, the first clustering algorithm whose runtime scales l
     sc:url "http://python.org" .
 
 <https://bio.tools/MOAD> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3068,
@@ -44452,7 +35640,7 @@ MMseqs2 includes Linclust, the first clustering algorithm whose runtime scales l
     biotools:primaryContact "Heather A. Carlson" .
 
 <https://bio.tools/MOAT> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_2640,
@@ -44473,7 +35661,7 @@ MMseqs2 includes Linclust, the first clustering algorithm whose runtime scales l
     biotools:primaryContact "Mark Gerstein" .
 
 <https://bio.tools/MOBscan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0160,
@@ -44491,52 +35679,8 @@ Your data is being processed. Please be patient as, depending on the number of s
     sc:name "MOBscan" ;
     sc:url "https://castillo.dicom.unican.es/mobscan/" .
 
-<https://bio.tools/MOF_coating> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0154,
-        edam:topic_0593,
-        edam:topic_0749,
-        edam:topic_2830,
-        edam:topic_3374 ;
-    sc:citation <https://doi.org/10.1021/ACSAMI.9B19551>,
-        "pubmed:31846291" ;
-    sc:description """Metal-Organic Framework Preserves the Biorecognition of Antibodies on Nanoscale Surfaces Validated by Single-Molecule Force Spectroscopy.
-
-Antibody biorecognition forms the basis for numerous biomedical applications such as diagnostic assays, targeted drug delivery, and targeted cancer imaging. However, antibodies, especially after being conjugated to surfaces or nanostructures, suffer from stability issues when stored under nonrefrigeration conditions. Therefore, enhancing the stability of antibodies on surfaces and nanostructures under ambient and elevated temperatures is of paramount importance for many nanobiotechnology applications. In this study, we introduce a simple and facile approach based on a metal-organic framework (MOF) coating to preserve the biorecognition capability of antibodies immobilized on nanoscale surfaces after exposure to elevated temperatures for a prolonged period.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'MOF', 'coating'""" ;
-    sc:featureList edam:operation_0387,
-        edam:operation_1816,
-        edam:operation_2428 ;
-    sc:name "MOF coating" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31846291" .
-
-<https://bio.tools/MOFs> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0154,
-        edam:topic_2258,
-        edam:topic_2275,
-        edam:topic_3068,
-        edam:topic_3314 ;
-    sc:citation <https://doi.org/10.26434/CHEMRXIV.7854980.V2> ;
-    sc:description """The Role of Molecular Modeling & Simulation in the Discovery and Deployment of Metal-Organic Frameworks for Gas Storage and Separation.
-
-Welcome to the Computation-Ready, Experimental (CoRE) Metal-Organic Frameworks Database!.
-
-High-throughput computational screening of metal-organic frameworks rely on the availability of disorder-free atomic coordinate files which can be used as input to simulation software packages.
-
-We have created CoRE MOF database and its variants which contains almost all MOFs that have been reported in the literature. We expect the database to continue to grow so please check back for new updates!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'adsorption', 'MOFs adsorption-based'""" ;
-    sc:featureList edam:operation_0337,
-        edam:operation_2476,
-        edam:operation_3454,
-        edam:operation_3891 ;
-    sc:name "MOFs" ;
-    sc:url "http://gregchung.github.io/CoRE-MOFs/" .
-
 <https://bio.tools/MOLGENIS_Research> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3068,
         edam:topic_3303,
@@ -44555,7 +35699,7 @@ We have created CoRE MOF database and its variants which contains almost all MOF
     biotools:primaryContact "Morris A. Swertz" .
 
 <https://bio.tools/MOLI> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2640,
@@ -44569,7 +35713,7 @@ We have created CoRE MOF database and its variants which contains almost all MOF
     sc:url "https://github.com/hosseinshn/MOLI" .
 
 <https://bio.tools/MONET> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0634,
@@ -44588,7 +35732,7 @@ We have created CoRE MOF database and its variants which contains almost all MOF
         "Sven Bergmann" .
 
 <https://bio.tools/MOODA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0203,
@@ -44602,7 +35746,7 @@ We have created CoRE MOF database and its variants which contains almost all MOF
     sc:url "http://mooda.stracquadaniolab.org" .
 
 <https://bio.tools/MOOMIN> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3315,
@@ -44618,7 +35762,7 @@ We have created CoRE MOF database and its variants which contains almost all MOF
     sc:url "http://github.com/htpusa/moomin" .
 
 <https://bio.tools/MOSClip> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2640,
@@ -44640,7 +35784,7 @@ We have created CoRE MOF database and its variants which contains almost all MOF
     biotools:primaryContact "Paolo Martini" .
 
 <https://bio.tools/MOST-visualization> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0602,
@@ -44662,7 +35806,7 @@ We have created CoRE MOF database and its variants which contains almost all MOF
     biotools:primaryContact "Desmond S. Lun" .
 
 <https://bio.tools/MOTS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0634 ;
@@ -44677,7 +35821,7 @@ As in many African countries, the Community Health Worker (CHW) is the backbone
     sc:url "https://github.com/motech-implementations/mots" .
 
 <https://bio.tools/MPF-BML> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0078,
@@ -44697,7 +35841,7 @@ MPF-BML-GUI is a standalone cross-platform package which features an easy-to-use
     sc:url "https://github.com/ahmedaq/MPF-BML-GUI" .
 
 <https://bio.tools/MPIC> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_2269,
@@ -44720,7 +35864,7 @@ This is a system that enables quick and easy assessment of user’s prognostic g
     sc:url "http://www.mpic-app.org" .
 
 <https://bio.tools/MPRAnalyze> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_0749,
@@ -44737,7 +35881,7 @@ This is a system that enables quick and easy assessment of user’s prognostic g
     sc:url "https://bioconductor.org/packages/release/bioc/html/MPRAnalyze.html" .
 
 <https://bio.tools/MPRAnator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0749,
@@ -44758,7 +35902,7 @@ This is a system that enables quick and easy assessment of user’s prognostic g
         "Martin Hemberg" .
 
 <https://bio.tools/MPRAscore> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203 ;
     sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTZ591>,
@@ -44768,7 +35912,7 @@ This is a system that enables quick and easy assessment of user’s prognostic g
     sc:url "https://github.com/abhisheknrl/MPRAscore" .
 
 <https://bio.tools/MPRDock> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0176,
@@ -44790,7 +35934,7 @@ This is a system that enables quick and easy assessment of user’s prognostic g
     biotools:primaryContact "Lab of Bioinformatics and Molecular Modeling" .
 
 <https://bio.tools/MPS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_2269,
@@ -44813,7 +35957,7 @@ When the product is highly complex and the developers aren’t experts in your b
     sc:url "http://campagnelab.org/software/bdval-for-mps/" .
 
 <https://bio.tools/MPS-Db> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3336,
         edam:topic_3375,
@@ -44825,14 +35969,17 @@ When the product is highly complex and the developers aren’t experts in your b
     sc:url "https://mps.csb.pitt.edu" .
 
 <https://bio.tools/MR-Base> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0625,
         edam:topic_3517 ;
     sc:citation <https://doi.org/10.12688/WELLCOMEOPENRES.15334.1>,
+        <https://doi.org/10.7554/eLife.34408>,
+        "pmcid:PMC5976434",
         "pmcid:PMC6694718",
+        "pubmed:29846171",
         "pubmed:31448343" ;
     sc:description "Using the MR-Base platform to investigate risk factors and drug targets for thousands of phenotypes | This repository contains the case studies associated with the manuscript \"Using the MR-Base platform to investigate risk factors and drug targets for thousands of phenotypes\" | 2-sample Mendelian Randomisation | MR-base is a database and analytical platform for Mendelian randomization being developed by the MRC Integrative Epidemiology Unit at the University of Bristol" ;
     sc:featureList edam:operation_0488,
@@ -44841,30 +35988,8 @@ When the product is highly complex and the developers aren’t experts in your b
     sc:name "MR-Base" ;
     sc:url "http://www.mrbase.org/" .
 
-<https://bio.tools/MR-Bi> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0089,
-        edam:topic_0091,
-        edam:topic_0749,
-        edam:topic_3063,
-        edam:topic_3678 ;
-    sc:citation <https://doi.org/10.1371/JOURNAL.PONE.0225256>,
-        "pmcid:PMC6879125",
-        "pubmed:31770418" ;
-    sc:description """A tool to support design and evaluation of career-spanning education and training.
-
-As the life sciences have become more data intensive, the pressure to incorporate the requisite training into life-science education and training programs has increased. To facilitate curriculum development, various sets of (bio)informatics competencies have been articulated; however, these have proved difficult to implement in practice. Addressing this issue, we have created a curriculum-design and -evaluation tool to support the development of specific Knowledge, Skills and Abilities (KSAs) that reflect the scientific method and promote both bioinformatics practice and the achievement of competencies. Twelve KSAs were extracted via formal analysis, and stages along a developmental trajectory, from uninitiated student to independent practitioner, were identified.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'Mastery Rubric Bioinformatics', 'KSAs', 'KSAs PLDs', 'KSAs competencies'""" ;
-    sc:featureList edam:operation_0244,
-        edam:operation_0306,
-        edam:operation_3454 ;
-    sc:name "MR-Bi" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31770418" .
-
 <https://bio.tools/MR-Clust> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2885,
@@ -44884,24 +36009,8 @@ Genetic variants which recover similar estimates of the causal effect of the ris
     sc:name "MR-Clust" ;
     sc:url "https://github.com/cnfoley/mrclust" .
 
-<https://bio.tools/MR-Forest> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3303,
-        edam:topic_3384,
-        edam:topic_3474 ;
-    sc:citation <https://doi.org/10.1109/JBHI.2019.2947506>,
-        "pubmed:31634145" ;
-    sc:description """A Deep Decision Framework for False Positive Reduction in Pulmonary Nodule Detection.
-
-With the development of deep learning methods such as convolutional neural network (CNN), the accuracy of automated pulmonary nodule detection has been greatly improved. However, the high computational and storage costs of the large-scale network have been a potential concern for the future widespread clinical application. In this paper, an alternative Multi-ringed (MR)-Forest framework, against the resource-consuming neural networks (NN)-based architectures, has been proposed for false positive reduction in pulmonary nodule detection, which consists of three steps. First, a novel multi-ringed scanning method is used to extract the order ring facets (ORFs) from the surface voxels of the volumetric nodule models; Second, Mesh-LBP and mapping deformation are employed to estimate the texture and shape features.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'LUNA16'""" ;
-    sc:name "MR)-Forest" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31634145" .
-
 <https://bio.tools/MR-MEGA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0199,
@@ -44923,7 +36032,7 @@ With the development of deep learning methods such as convolutional neural netwo
         "Reedik Magi" .
 
 <https://bio.tools/MRICloud> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3304,
         edam:topic_3384,
@@ -44945,7 +36054,7 @@ With the development of deep learning methods such as convolutional neural netwo
         "Kumiko Oishi" .
 
 <https://bio.tools/MRIcron> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3334,
         edam:topic_3384,
@@ -44964,7 +36073,7 @@ MRIcron is a cross-platform NIfTI format image viewer. It can load multiple laye
     sc:url "https://www.nitrc.org/projects/mricron" .
 
 <https://bio.tools/MRPrimerW2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0632,
         edam:topic_3512,
@@ -44989,7 +36098,7 @@ MRIcron is a cross-platform NIfTI format image viewer. It can load multiple laye
         "Min-Soo Kim" .
 
 <https://bio.tools/MRUniNovo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3520,
         edam:topic_3673 ;
@@ -45009,7 +36118,7 @@ MRIcron is a cross-platform NIfTI format image viewer. It can load multiple laye
         "Tao Chen" .
 
 <https://bio.tools/MRtrix3> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_3384,
@@ -45023,7 +36132,7 @@ MRIcron is a cross-platform NIfTI format image viewer. It can load multiple laye
     sc:url "https://github.com/MRtrix3/mrtrix3" .
 
 <https://bio.tools/MS-Helios> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -45046,7 +36155,7 @@ MRIcron is a cross-platform NIfTI format image viewer. It can load multiple laye
     biotools:primaryContact "Harald Marx" .
 
 <https://bio.tools/MS2CNN> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -45074,7 +36183,7 @@ Lin YM, Chen CT, Chang JM. MS2CNN: predicting MS/MS spectrum based on protein se
     sc:url "https://github.com/changlabtw/MS2CNN" .
 
 <https://bio.tools/MS2LDA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3172,
@@ -45095,7 +36204,7 @@ Lin YM, Chen CT, Chang JM. MS2CNN: predicting MS/MS spectrum based on protein se
     sc:url "http://ms2lda.org" .
 
 <https://bio.tools/MS2PIP_Server> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0121 ;
@@ -45120,7 +36229,7 @@ Lin YM, Chen CT, Chang JM. MS2CNN: predicting MS/MS spectrum based on protein se
     sc:url "https://iomics.ugent.be/ms2pip/" .
 
 <https://bio.tools/MSDB> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0621,
@@ -45154,7 +36263,7 @@ MICAS: Microsatellite Analysis Server.""" ;
     sc:url "http://minisatellites.u-psud.fr" .
 
 <https://bio.tools/MSDRP> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2229,
@@ -45172,7 +36281,7 @@ Drug response prediction in cancer cell lines is vital to discover new anticance
     sc:url "https://github.com/shimingwang1994/MSDRP.git" .
 
 <https://bio.tools/MSIdV> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_3360,
         edam:topic_3382,
@@ -45189,7 +36298,7 @@ Drug response prediction in cancer cell lines is vital to discover new anticance
     biotools:primaryContact "Eisuke Hayakawa" .
 
 <https://bio.tools/MSIpred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2885,
         edam:topic_3295,
@@ -45207,7 +36316,7 @@ Drug response prediction in cancer cell lines is vital to discover new anticance
     sc:url "https://github.com/wangc29/MSIpred" .
 
 <https://bio.tools/MSMS-Chooser> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0769,
@@ -45228,7 +36337,7 @@ MSMS-Chooser is a GNPS workflow and open-source protocol to empower the communit
     sc:url "https://ccms-ucsd.github.io/GNPSDocumentation/msmschooser/" .
 
 <https://bio.tools/MTBGT> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0632,
         edam:topic_2885,
@@ -45248,7 +36357,7 @@ MSMS-Chooser is a GNPS workflow and open-source protocol to empower the communit
     sc:url "https://github.com/KamelaNg/MTBGT" .
 
 <https://bio.tools/MTGO-SC> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0602,
@@ -45280,7 +36389,7 @@ Extracting gene modules from single cell RNA-seq cell clusters""" ;
     sc:url "https://github.com/ne1s0n/MTGOsc" .
 
 <https://bio.tools/MTK> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0202,
@@ -45298,7 +36407,7 @@ Code and sequence files used in MTK manuscript""" ;
     sc:url "https://github.com/jpfon/MTK" .
 
 <https://bio.tools/MTMR-Net> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:citation <https://doi.org/10.1109/TMI.2019.2934577>,
         "pubmed:31403410" ;
@@ -45309,30 +36418,18 @@ Code and sequence files used in MTK manuscript""" ;
 
 <https://bio.tools/MTiAutoDock> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ],
-        [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1463" ;
-            sc:name "Small molecule structure" ;
-            sc:sameAs "http://edamontology.org/data_1463" ],
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein structure" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ],
-        [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1463" ;
-            sc:name "Small molecule structure" ;
-            sc:sameAs "http://edamontology.org/data_1463" ] ;
+            sc:additionalType "http://edamontology.org/data_1463" ;
+            sc:encodingFormat "http://edamontology.org/format_3814" ;
+            sc:name "Small molecule structure" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1461" ;
-            sc:name "Protein-ligand complex" ;
-            sc:sameAs "http://edamontology.org/data_1461" ],
-        [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1461" ;
-            sc:name "Protein-ligand complex" ;
-            sc:sameAs "http://edamontology.org/data_1461" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1461" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein-ligand complex" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3534 ;
     sc:citation "pubmed:25855812" ;
@@ -45348,30 +36445,18 @@ Code and sequence files used in MTK manuscript""" ;
 
 <https://bio.tools/MTiOpenScreen> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ],
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein structure" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1463" ;
-            sc:name "Small molecule structure" ;
-            sc:sameAs "http://edamontology.org/data_1463" ],
-        [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1463" ;
-            sc:name "Small molecule structure" ;
-            sc:sameAs "http://edamontology.org/data_1463" ],
-        [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ] ;
+            sc:additionalType "http://edamontology.org/data_1463" ;
+            sc:encodingFormat "http://edamontology.org/format_3814" ;
+            sc:name "Small molecule structure" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1461" ;
-            sc:name "Protein-ligand complex" ;
-            sc:sameAs "http://edamontology.org/data_1461" ],
-        [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1461" ;
-            sc:name "Protein-ligand complex" ;
-            sc:sameAs "http://edamontology.org/data_1461" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1461" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein-ligand complex" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3343 ;
     sc:citation "pubmed:25855812",
@@ -45385,34 +36470,8 @@ Code and sequence files used in MTK manuscript""" ;
     sc:softwareVersion "1.0" ;
     sc:url "https://mobyle.rpbs.univ-paris-diderot.fr/cgi-bin/portal.py#forms::MTiOpenScreen" .
 
-<https://bio.tools/MUFold-SS> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0166,
-        edam:topic_3474,
-        edam:topic_3542 ;
-    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTZ712>,
-        "pubmed:31532508" ;
-    sc:description "> COMMON LINK WITH (PUB. & NAME DIFFERENT) bio.tools/mufold (MUFOLD.ORG) | > CORRECT NAME OF TOOL COULD ALSO BE 'MUFold-SSW', 'MUFold-SS MUFold-Angle MUFold-BetaTurn MUFold-GammaTurn', 'MUFold-Angle MUFold-BetaTurn MUFold-GammaTurn', 'MUFold-SS MUFold-Angle MUFold-BetaTurn' | A new web server for predicting protein secondary structures, torsion angles, and turns | MOTIVATION:Protein secondary structure and backbone torsion angle prediction can provide important information for predicting protein 3D structures and protein functions. Our new methods MUFold-SS, MUFold-Angle, MUFold-BetaTurn, and MUFold-GammaTurn, developed based on advanced deep neural networks, achieved state-of-the-art performance for predicting secondary structures, backbone torsion angles, beta-turns, and gamma-turns, respectively. An easy-to-use web service will provide the community a convenient way to use these methods for research and development. RESULTS:MUFold-SSW, a new web server, is presented" ;
-    sc:featureList edam:operation_0249,
-        edam:operation_0468,
-        edam:operation_0469 ;
-    sc:name "MUFold-SS" ;
-    sc:url "http://mufold.org/mufold-ss-angle" .
-
-<https://bio.tools/MUSIQUE-II> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_2269,
-        edam:topic_3382 ;
-    sc:citation <https://doi.org/10.1109/TIP.2019.2952010>,
-        "pubmed:31794396" ;
-    sc:description """Learning No-Reference Quality Assessment of Multiply and Singly Distorted Images with Big Data.
-
-Previous research on no-reference (NR) quality assessment of multiply-distorted images focused mainly on three distortion types (white noise, Gaussian blur, and JPEG compression), while in practice images can be contaminated by many other common distortions due to the various stages of processing. Although MUSIQUE (MUltiply-and Singly-distorted Image QUality Estimator) Zhang et al., TIP 2018 is a successful NR algorithm, this approach is still limited to the three distortion types. In this paper, we extend MUSIQUE to MUSIQUE-II to blindly assess the quality of images corrupted by five distortion types (white noise, Gaussian blur, JPEG compression, JPEG2000 compression, and contrast change) and their combinations.
-
-||| HOMEPAGE MISSING!""" ;
-    sc:name "MUSIQUE-II" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31794396" .
-
 <https://bio.tools/MVApp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0625,
@@ -45434,7 +36493,7 @@ Previous research on no-reference (NR) quality assessment of multiply-distorted
     biotools:primaryContact "Magdalena Julkowska" .
 
 <https://bio.tools/MVIAm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3360,
@@ -45448,26 +36507,8 @@ Previous research on no-reference (NR) quality assessment of multiply-distorted
     sc:name "MVIAm" ;
     sc:url "https://github.com/must-bio-team/MVIAm" .
 
-<https://bio.tools/MVP_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0080,
-        edam:topic_0121,
-        edam:topic_0154,
-        edam:topic_3512,
-        edam:topic_3520 ;
-    sc:citation <https://doi.org/10.1101/842856> ;
-    sc:description """An extensible Galaxy plug-In for multi-omics data visualization and exploration.
-
-The Galaxy MVP visualization plugin enables viewing of results produced from workflows integrating genomic sequencing data and mass spectrometry proteomics data.
-
-||| NAME EQUAL TO (PUB. DIFFERENT) bio.tools/mvp""" ;
-    sc:featureList edam:operation_0337,
-        edam:operation_3631,
-        edam:operation_3695 ;
-    sc:name "MVP_autogenerated" ;
-    sc:url "https://github.com/galaxyproteomics/mvpapplication-git.git" .
-
 <https://bio.tools/MWI> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0593,
         edam:topic_0634,
@@ -45481,7 +36522,7 @@ The Galaxy MVP visualization plugin enables viewing of results produced from wor
     sc:url "https://sourceforge.net/projects/mwi-spinal-cord-atlases/" .
 
 <https://bio.tools/MaGenDB> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0659,
@@ -45501,7 +36542,7 @@ Pipelines of data analysis for MaGenDB""" ;
     sc:url "http://magen.whu.edu.cn" .
 
 <https://bio.tools/MaSIF> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0166,
@@ -45525,7 +36566,7 @@ MaSIF is a proof-of-concept method to decipher patterns in protein surfaces impo
     sc:url "https://github.com/lpdi-epfl/masif" .
 
 <https://bio.tools/Mabellini> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -45547,28 +36588,8 @@ MabeLLINI (Mycobacterium ABscessus modELLing INItiative) is a database available
     sc:name "Mabellini" ;
     sc:url "http://www.mabellinidb.science" .
 
-<https://bio.tools/Machine_Learning> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0154,
-        edam:topic_3390,
-        edam:topic_3407,
-        edam:topic_3474,
-        edam:topic_3810 ;
-    sc:citation <https://doi.org/10.7717/PEERJ.7840>,
-        "pmcid:PMC6802673",
-        "pubmed:31649832" ;
-    sc:description """Machine learning classification models for fetal skeletal development performance prediction using maternal bone metabolic proteins in goats.
-
-Machine Learning for goat bone prediction.
-
-Classifiers for Liuyang black goats bone profiles using maternal serum bone metabolism.
-
-Datasets and results will be uploaded after the manuscript will be send to a journal""" ;
-    sc:license "MIT" ;
-    sc:name "Machine Learning" ;
-    sc:url "https://gitlab.com/muntisa/goat-bones-machine-learning" .
-
 <https://bio.tools/MaizeDIG> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0625,
@@ -45585,26 +36606,21 @@ Datasets and results will be uploaded after the manuscript will be send to a jou
 
 <https://bio.tools/MaizeMine> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2353" ;
-            sc:name "Ontology data" ;
-            sc:sameAs "http://edamontology.org/data_2353" ],
+            sc:additionalType "http://edamontology.org/data_2353" ;
+            sc:name "Ontology data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ] ;
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:name "Sequence features" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3753" ;
-            sc:name "Over-representation data" ;
-            sc:sameAs "http://edamontology.org/data_3753" ],
+            sc:additionalType "http://edamontology.org/data_3786" ;
+            sc:name "Query script" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ],
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:name "Sequence features" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3786" ;
-            sc:name "Query script" ;
-            sc:sameAs "http://edamontology.org/data_3786" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3753" ;
+            sc:name "Over-representation data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application",
         "Web service" ;
@@ -45628,7 +36644,7 @@ Datasets and results will be uploaded after the manuscript will be send to a jou
     sc:url "http://maizemine.rnet.missouri.edu:8080/maizemine" .
 
 <https://bio.tools/MaizeSNPDB> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2885,
@@ -45658,7 +36674,7 @@ After running the R script, a new R data file named as test.snp. Mat.""" ;
     sc:url "https://github.com/venyao/MaizeSNPDB" .
 
 <https://bio.tools/Making_Soup> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0176,
         edam:topic_0593,
@@ -45679,29 +36695,8 @@ The main work is done here by a few scripts, located in the aptly named scripts
     sc:name "Making Soup" ;
     sc:url "http://github.com/dspoel/soup" .
 
-<https://bio.tools/Making_Soup_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0176,
-        edam:topic_0659,
-        edam:topic_3047,
-        edam:topic_3292,
-        edam:topic_3306 ;
-    sc:citation <https://doi.org/10.1021/ACS.JCIM.9B00971>,
-        "pubmed:31816234" ;
-    sc:description """Preparing and Validating Models of the Bacterial Cytoplasm for Molecular Simulation.
-
-The cytoplasm of a cell is sometimes jestingly called a Soup, since it contains many different ingredients. Indeed there is quite a bit of salt and glutamate, the well known flavour enhancing compoud that is used a lot in asian kitchen but also in broth. Read more here: https://en.wikipedia.org/wiki/Glutamate_flavoring.
-
-In order to study the cytoplasm of a cell one can use a variety of experimental biochemistry techniques, but also computer simulations, which is the focus of this page. Here we thererfore provide information and python scripts to run computer simulations using http://www.gromacs.org of (quite) realistic models of the cytoplasm.
-
-The main work is done here by a few scripts, located in the aptly named scripts directory. They are described briefly in the README.md in that directory""" ;
-    sc:featureList edam:operation_0477,
-        edam:operation_0478,
-        edam:operation_2476 ;
-    sc:name "Making Soup_autogenerated" ;
-    sc:url "http://github.com/dspoel/soup" .
-
 <https://bio.tools/MalariaGEN> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0625,
@@ -45731,7 +36726,7 @@ Our projects provide a framework for malaria researchers around the world to wor
     sc:url "http://www.malariagen.net/projects" .
 
 <https://bio.tools/Malaria_Data_District> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3063,
@@ -45744,24 +36739,8 @@ Preventable diseases still cause huge mortality in low- and middle-income countr
     sc:name "Malaria Data District" ;
     sc:url "https://seantomlinson30.shinyapps.io/shiny-map-prize/" .
 
-<https://bio.tools/Mango_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0654 ;
-    sc:citation <https://doi.org/10.1016/J.CELS.2019.11.002>,
-        "pubmed:31812694" ;
-    sc:description """Exploratory Data Analysis for Large-Scale Sequencing Datasets.
-
-Mango User Guide — bdgenomics.mango 0.0.5 documentation.
-
-Free document hosting provided by Read the Docs.
-
-||| NAME EQUAL TO (PUB. DIFFERENT) bio.tools/mango""" ;
-    sc:featureList edam:operation_3208,
-        edam:operation_3218 ;
-    sc:name "Mango_autogenerated" ;
-    sc:url "https://bdg-mango.readthedocs.io/en/latest/" .
-
 <https://bio.tools/Manhattan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_2885,
         edam:topic_3500,
@@ -45779,7 +36758,7 @@ A useful way to summarize genome-wide association data is with a Manhattan plot.
     sc:url "https://genome.sph.umich.edu/wiki/Code_Sample:_Generating_Manhattan_Plots_in_R" .
 
 <https://bio.tools/Manhattan_Harvester> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3517 ;
@@ -45799,24 +36778,8 @@ A useful way to summarize genome-wide association data is with a Manhattan plot.
     sc:url "https://www.geenivaramu.ee/en/tools/manhattan-harvester" ;
     biotools:primaryContact "T. Haller" .
 
-<https://bio.tools/Mann-Kendall> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3810 ;
-    sc:citation <https://doi.org/10.20944/PREPRINTS201912.0226.V1> ;
-    sc:description """Long Term Homogeneity, Trend and Change-Point Analysis of Rainfall in the Arid District of Ananthapuramu, Andhra Pradesh State, India.
-
-Daily rainfall data was collected for the arid district of Ananthapuramu, Andhra Pradesh state, India from 1981 to 2016 at the sub-district level and aggregated to monthly, annual and seasonal rainfall totals and the number of rainy days. The objective of this study is to evaluate the homogeneity, trend, and trend change points in the rainfall data. After quality checks and homogeneity analysis, a total of 27 rain gauge locations were considered for trend analysis. A serial correlation test was applied to all the time series to identify serially independent series. Non-Parametric Mann-Kendall test and Spearman&rsquo;s rank correlation tests were applied to serially independent series.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'Pre-Whitening', 'Ananthapuramu Andhra Pradesh', 'arid district Ananthapuramu Andhra Pradesh', 'rainfall'""" ;
-    sc:featureList edam:operation_2238,
-        edam:operation_3436,
-        edam:operation_3891 ;
-    sc:name "Mann-Kendall" ;
-    sc:url "https://doi.org/10.20944/PREPRINTS201912.0226.V1" .
-
 <https://bio.tools/MapCaller> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0199,
@@ -45831,7 +36794,7 @@ Daily rainfall data was collected for the arid district of Ananthapuramu, Andhra
     sc:url "https://github.com/hsinnan75/MapCaller" .
 
 <https://bio.tools/MapOptics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
@@ -45851,7 +36814,7 @@ Daily rainfall data was collected for the arid district of Ananthapuramu, Andhra
     biotools:primaryContact "Fady Mohareb" .
 
 <https://bio.tools/MapStore> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_3263,
@@ -45865,7 +36828,7 @@ Daily rainfall data was collected for the arid district of Ananthapuramu, Andhra
     sc:url "http://geoportale.lamma.rete.toscana.it/MapStore/public/" .
 
 <https://bio.tools/Mapper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3067,
@@ -45881,7 +36844,7 @@ Daily rainfall data was collected for the arid district of Ananthapuramu, Andhra
     sc:url "https://github.com/alpatania/AHBA_microarray_Mapper/" .
 
 <https://bio.tools/MariaOsmala> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3169,
@@ -45904,7 +36867,7 @@ https://github.com/MariaOsmala/RFECS_BUG_FIXES.git.""" ;
     sc:url "https://github.com/MariaOsmala/preprint" .
 
 <https://bio.tools/MarkerHub> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0218,
         edam:topic_0634,
@@ -45923,7 +36886,7 @@ We aimed to design a hybrid system for systematic entity recognition and ranking
     sc:url "http://markerhub.iis.sinica.edu.tw" .
 
 <https://bio.tools/Mascot_Daemon> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121 ;
     sc:description "Mascot Daemon is a Microsoft Windows client application that automates the submission of data files to Mascot server." ;
@@ -45937,18 +36900,18 @@ We aimed to design a hybrid system for systematic entity recognition and ranking
 
 <https://bio.tools/Mascot_Distiller> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ] ;
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:encodingFormat "http://edamontology.org/format_3654" ;
+            sc:name "Mass spectrometry data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ],
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:encodingFormat "http://edamontology.org/format_3834" ;
+            sc:name "Mass spectrometry data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0896" ;
-            sc:name "Protein report" ;
-            sc:sameAs "http://edamontology.org/data_0896" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0896" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Protein report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121 ;
     sc:description """Mascot Distiller Workstation offers a single, intuitive interface to a wide range of native (binary) mass spectrometry data files. A unique algorithm, which fits each peak to a calculated isotope distribution, processes the raw data into high quality, de-isotoped peak lists. 
@@ -45969,10 +36932,10 @@ This core functionality can be extended by adding one or more toolboxes. These a
 
 <https://bio.tools/Mascot_Parser> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2080" ;
-            sc:name "Database search results" ;
-            sc:sameAs "http://edamontology.org/data_2080" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2080" ;
+            sc:encodingFormat "http://edamontology.org/format_3713" ;
+            sc:name "Database search results" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0121 ;
     sc:description "Mascot Parser provides an object-oriented Application Programmer Interface (API) to Mascot result files and configuration files, making it easy for programs written in C++, C#, Java, Perl or Python to access Mascot results." ;
@@ -45986,7 +36949,7 @@ This core functionality can be extended by adding one or more toolboxes. These a
     sc:url "http://www.matrixscience.com/msparser.html" .
 
 <https://bio.tools/Mass_Spec_Studio> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0769,
@@ -46016,7 +36979,7 @@ Current analysis packages include protein-protein crosslinking (XL), hydrogen/de
     sc:url "https://www.msstudio.ca" .
 
 <https://bio.tools/MasterMSM> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0176,
@@ -46031,7 +36994,7 @@ Current analysis packages include protein-protein crosslinking (XL), hydrogen/de
     sc:url "https://github.com/daviddesancho/MasterMSM" .
 
 <https://bio.tools/MasterOfPores> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3047,
@@ -46054,7 +37017,7 @@ Nextflow pipeline for analysis of Nanopore data from direct RNA sequencing. This
     sc:url "https://github.com/biocorecrg/master_of_pores" .
 
 <https://bio.tools/Mat_Peptide> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3324,
@@ -46074,7 +37037,7 @@ The United States Government Department of Health and Human Services, National I
     sc:url "https://github.com/VirusBRC/vipr_mat_peptide" .
 
 <https://bio.tools/Matched_Forest> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_3474 ;
@@ -46089,7 +37052,7 @@ This code implements Matched Forest algorithm which aims to find important varia
     sc:url "https://github.com/NooshinSh/Matched_Forest" .
 
 <https://bio.tools/MathIOmica> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3170,
@@ -46108,7 +37071,7 @@ MathIOmica is a package for bioinformatics, written in the Wolfram language, tha
     sc:url "https://mathiomica.org/" .
 
 <https://bio.tools/MatrisomeDB> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -46129,14 +37092,14 @@ Please follow MatrisomeDB. MatrisomeDB will be hosted at matrisomedb.org very so
 
 <https://bio.tools/MatrixMotif> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ] ;
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence trace" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1362" ;
-            sc:name "Position weight matrix" ;
-            sc:sameAs "http://edamontology.org/data_1362" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1362" ;
+            sc:encodingFormat "http://edamontology.org/format_2064" ;
+            sc:name "Position weight matrix" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Script",
         "Workflow" ;
@@ -46158,7 +37121,7 @@ Please follow MatrisomeDB. MatrisomeDB will be hosted at matrisomedb.org very so
     biotools:primaryContact <https://orcid.org/0000-0002-3036-4345> .
 
 <https://bio.tools/MaveDB> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0199,
@@ -46188,7 +37151,7 @@ Welcome to our table of Multiplexed Assay of Variant Effect (MAVE) studies. To c
     sc:url "https://www.mavedb.org" .
 
 <https://bio.tools/MeLAD> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0209,
@@ -46203,7 +37166,7 @@ Welcome to our table of Multiplexed Assay of Variant Effect (MAVE) studies. To c
     sc:url "https://melad.ddtmlab.org" .
 
 <https://bio.tools/Mecan4CNA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0632,
         edam:topic_2885,
@@ -46218,7 +37181,7 @@ Welcome to our table of Multiplexed Assay of Variant Effect (MAVE) studies. To c
     sc:url "https://pypi.org/project/mecan4cna/" .
 
 <https://bio.tools/MechSpy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2840,
         edam:topic_3292,
@@ -46231,37 +37194,23 @@ Welcome to our table of Multiplexed Assay of Variant Effect (MAVE) studies. To c
     sc:name "MechSpy" ;
     sc:url "https://github.com/ignaciot/MechSpy" .
 
-<https://bio.tools/MedEx> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3335,
-        edam:topic_3372 ;
-    sc:citation <https://doi.org/10.3233/SHTI190818>,
-        "pubmed:31483266" ;
-    sc:description "> HOMEPAGE MISSING! | Data Analytics for Medical Domain Experts in Real-Time | Translational research in the medical sector is dependent on clear communication between all participants. Visualization helps to represent data from different sources in a comprehensible way across disciplines. Existing tools for clinical data management are usually monolithic and technically challenging to set up, others require a transformation into specific data models while providing mostly non-interactive visualizations or being specialized to very particular use cases. Statistical programming languages (R, Julia) on the other hand offer great flexibility in data analytics, but are harder to access for clinicians with little to no programming expertise. Our software, the Medical Data Explorer (MedEx), aims to fill this gap as light-weight, intuitive, web-based solution with simple data import routes" ;
-    sc:name "MedEx" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31483266" .
-
 <https://bio.tools/MedicMine> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2353" ;
-            sc:name "Ontology data" ;
-            sc:sameAs "http://edamontology.org/data_2353" ],
+            sc:additionalType "http://edamontology.org/data_2353" ;
+            sc:name "Ontology data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ] ;
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:name "Sequence features" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3753" ;
-            sc:name "Over-representation data" ;
-            sc:sameAs "http://edamontology.org/data_3753" ],
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:name "Sequence features" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ],
+            sc:additionalType "http://edamontology.org/data_3786" ;
+            sc:name "Query script" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3786" ;
-            sc:name "Query script" ;
-            sc:sameAs "http://edamontology.org/data_3786" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3753" ;
+            sc:name "Over-representation data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application",
         "Web service" ;
@@ -46284,18 +37233,8 @@ Welcome to our table of Multiplexed Assay of Variant Effect (MAVE) studies. To c
     sc:softwareVersion "1.3.0" ;
     sc:url "http://medicmine.jcvi.org/medicmine" .
 
-<https://bio.tools/Medication> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3063,
-        edam:topic_3384,
-        edam:topic_3415 ;
-    sc:citation <https://doi.org/10.3233/SHTI190176>,
-        "pubmed:31437878" ;
-    sc:description "> LOW CONFIDENCE! | Bridging the Gap Between Consumers' Medication Questions and Trusted Answers | The gold standard corpus for medication question answering introduced in the MedInfo 2019 paper (Bridging the Gap between Consumers’ Medication Questions and Trusted Answers)" ;
-    sc:name "Medication" ;
-    sc:url "https://github.com/abachaa/Medication_QA_MedInfo2019" .
-
 <https://bio.tools/Meffil> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3173,
         edam:topic_3295 ;
@@ -46316,7 +37255,7 @@ Epigenome-Wide Association Studies (EWAS)""" ;
     biotools:primaryContact "Matthew Suderman" .
 
 <https://bio.tools/MegaGTA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3174,
@@ -46340,7 +37279,7 @@ git clone https://github.com/HKU-BAL/megagta.git.""" ;
     sc:url "https://github.com/HKU-BAL/megagta" .
 
 <https://bio.tools/Meltos> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_3175,
@@ -46359,7 +37298,7 @@ Meltos is a novel approach to estimate the variant allele frequency of somatic S
     sc:url "https://github.com/ih-lab/Meltos" .
 
 <https://bio.tools/MemSurfer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0153,
         edam:topic_0820,
@@ -46371,31 +37310,20 @@ Meltos is a novel approach to estimate the variant allele frequency of somatic S
     sc:name "MemSurfer" ;
     sc:url "https://bbs.llnl.gov/MemSurfer-data.html" .
 
-<https://bio.tools/Mercator_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3063,
-        edam:topic_3303 ;
-    sc:citation <https://doi.org/10.1101/733261> ;
-    sc:description "> NAME EQUAL TO (PUB. DIFFERENT) bio.tools/mercator, bio.tools/mercator_plant | An R Package for Visualization of Distance Matrices | Clustering and Visualizing Distance Matrices | Defines the classes used to explore, cluster and visualize distance matrices, especially those arising from binary data" ;
-    sc:featureList edam:operation_2939,
-        edam:operation_3432 ;
-    sc:license "Apache-2.0" ;
-    sc:name "Mercator_autogenerated" ;
-    sc:url "https://cran.r-project.org/web/packages/Mercator/index.html" .
-
 <https://bio.tools/MeroX> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ],
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3244" ;
+            sc:name "Mass spectrometry spectra" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2886" ;
-            sc:name "Protein sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2886" ] ;
+            sc:additionalType "http://edamontology.org/data_2886" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1915" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_1317 ;
@@ -46417,7 +37345,7 @@ Meltos is a novel approach to estimate the variant allele frequency of somatic S
     sc:url "https://www.stavrox.com" .
 
 <https://bio.tools/MetAML> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3174 ;
     sc:citation <https://doi.org/10.1371/journal.pcbi.1004977> ;
@@ -46429,7 +37357,7 @@ It provides also species-level taxonomic profiles, marker presence data, and met
     sc:url "http://segatalab.cibio.unitn.it/tools/metaml/" .
 
 <https://bio.tools/MetGem> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3172,
@@ -46444,7 +37372,7 @@ It provides also species-level taxonomic profiles, marker presence data, and met
     sc:url "https://github.com/metgem/metgem/releases" .
 
 <https://bio.tools/MetHis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_2885,
@@ -46459,7 +37387,7 @@ It provides also species-level taxonomic profiles, marker presence data, and met
     sc:url "https://github.com/romain-laurent/MetHis" .
 
 <https://bio.tools/MetPC> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3172,
@@ -46481,7 +37409,7 @@ It provides also species-level taxonomic profiles, marker presence data, and met
     biotools:primaryContact "Jaesik Jeong" .
 
 <https://bio.tools/MetWork> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3172,
@@ -46496,7 +37424,7 @@ It provides also species-level taxonomic profiles, marker presence data, and met
     sc:url "https://metwork.pharmacie.parisdescartes.fr" .
 
 <https://bio.tools/Meta-4mCpred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3295,
@@ -46518,7 +37446,7 @@ It provides also species-level taxonomic profiles, marker presence data, and met
         "Leyi Wei" .
 
 <https://bio.tools/Meta-iAVP> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3373,
@@ -46538,13 +37466,16 @@ In spite of the large-scale production and widespread distribution of vaccines a
     sc:url "http://codes.bio/meta-iavp/" .
 
 <https://bio.tools/MetaBAT_2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3174,
         edam:topic_3837 ;
     sc:citation <https://doi.org/10.7717/PEERJ.7359>,
+        <https://doi.org/10.7717/peerj.1165>,
+        "pmcid:PMC4556158",
         "pmcid:PMC6662567",
+        "pubmed:26336640",
         "pubmed:31388474" ;
     sc:description "an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies | MetaBAT2 clusters metagenomic contigs into different \"bins\", each of which should correspond to a putative genome | MetaBAT2 uses nucleotide composition information and source strain abundance (measured by depth-of-coverage by aligning the reads to the contigs) to perform binning" ;
     sc:featureList edam:operation_0310,
@@ -46554,7 +37485,7 @@ In spite of the large-scale production and widespread distribution of vaccines a
     sc:url "https://bitbucket.org/berkeleylab/metabat" .
 
 <https://bio.tools/MetaCRAST> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3174,
@@ -46576,7 +37507,7 @@ MetaCRAST (Metagenomic CRISPR Reference-Aided Search Tool) is a tool to detect C
     sc:url "https://github.com/molleraj/MetaCRAST" .
 
 <https://bio.tools/MetaCarvel> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3174,
@@ -46593,7 +37524,7 @@ MetaCRAST (Metagenomic CRISPR Reference-Aided Search Tool) is a tool to detect C
     sc:url "https://github.com/marbl/MetaCarvel" .
 
 <https://bio.tools/MetaCell> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0203,
@@ -46611,28 +37542,8 @@ scRNA-seq profiles each represent a highly partial sample of mRNA molecules from
     sc:name "MetaCell" ;
     sc:url "https://tanaylab.github.io/metacell/" .
 
-<https://bio.tools/MetaCon> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0196,
-        edam:topic_2269,
-        edam:topic_3174,
-        edam:topic_3697 ;
-    sc:citation <https://doi.org/10.1186/S12859-019-2904-4>,
-        "pmcid:PMC6873667",
-        "pubmed:31757198" ;
-    sc:description """unsupervised clustering of metagenomic contigs with probabilistic k-mers statistics and coverage.
-
-MOTIVATION:Sequencing technologies allow the sequencing of microbial communities directly from the environment without prior culturing. Because assembly typically produces only genome fragments, also known as contigs, it is crucial to group them into putative species for further taxonomic profiling and down-streaming functional analysis. Taxonomic analysis of microbial communities requires contig clustering, a process referred to as binning, that is still one of the most challenging tasks when analyzing metagenomic data. The major problems are the lack of taxonomically related genomes in existing reference databases, the uneven abundance ratio of species, sequencing errors, and the limitations due to binning contig of different lengths.
-
-||| HOMEPAGE MISSING!""" ;
-    sc:featureList edam:operation_3432,
-        edam:operation_3460,
-        edam:operation_3472,
-        edam:operation_3798 ;
-    sc:name "MetaCon" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31757198" .
-
 <https://bio.tools/MetaDEGalaxy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3170,
@@ -46653,28 +37564,8 @@ This history is empty. You can load your own data or get data from an external s
     sc:name "MetaDEGalaxy" ;
     sc:url "http://203.101.224.202/galaxy/" .
 
-<https://bio.tools/MetaDEGalaxy_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0769,
-        edam:topic_3170,
-        edam:topic_3174,
-        edam:topic_3697,
-        edam:topic_3837 ;
-    sc:citation <https://doi.org/10.12688/F1000RESEARCH.18866.2>,
-        "pmcid:PMC6807170",
-        "pubmed:31737256" ;
-    sc:description """Galaxy workflow for differential abundance analysis of 16s metagenomic data.
-
-You are over your disk quota. Tool execution is on hold until your disk usage drops below your allocated quota.
-
-This history is empty. You can load your own data or get data from an external source""" ;
-    sc:featureList edam:operation_0232,
-        edam:operation_3219,
-        edam:operation_3435 ;
-    sc:name "MetaDEGalaxy_autogenerated" ;
-    sc:url "http://203.101.224.202/galaxy/" .
-
 <https://bio.tools/MetaDome> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0199,
@@ -46696,7 +37587,7 @@ This history is empty. You can load your own data or get data from an external s
     sc:url "https://stuart.radboudumc.nl/metadome" .
 
 <https://bio.tools/MetaErg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -46725,14 +37616,14 @@ MetaErg begins biological feature and element prediction by identifying CRISPR e
 
 <https://bio.tools/MetaEuk> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1234" ;
-            sc:name "Sequence set (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1234" ] ;
+            sc:additionalType "http://edamontology.org/data_1234" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence set (nucleic acid)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1233" ;
-            sc:name "Sequence set (protein)" ;
-            sc:sameAs "http://edamontology.org/data_1233" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1233" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence set (protein)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0623,
         edam:topic_3174 ;
@@ -46750,7 +37641,7 @@ MetaErg begins biological feature and element prediction by identifying CRISPR e
     sc:url "https://metaeuk.soedinglab.org/" .
 
 <https://bio.tools/MetaGxBreast> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0634,
@@ -46773,7 +37664,7 @@ MetaErg begins biological feature and element prediction by identifying CRISPR e
         "Michael Zon" .
 
 <https://bio.tools/MetaMEx> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3295,
@@ -46791,7 +37682,7 @@ Transcriptomics meta-analysis of skeletal muscle response to exercise. The shiny
     sc:url "http://www.metamex.eu" .
 
 <https://bio.tools/MetaMed> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3172,
@@ -46811,7 +37702,7 @@ Metagenomics Medicine mapping system (MetaMed), is a novel and integrative syste
     sc:url "http://metamed.rwebox.com/index" .
 
 <https://bio.tools/MetaMiner> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2229,
@@ -46829,7 +37720,7 @@ Ribosomally synthesized and post-translationally modified peptides (RiPPs) are a
     sc:url "https://github.com/mohimanilab/MetaMiner" .
 
 <https://bio.tools/MetaMorpheus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -46855,7 +37746,7 @@ Ribosomally synthesized and post-translationally modified peptides (RiPPs) are a
     sc:url "https://github.com/smith-chem-wisc/MetaMorpheus" .
 
 <https://bio.tools/MetaOmics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0769,
@@ -46875,7 +37766,7 @@ Ribosomally synthesized and post-translationally modified peptides (RiPPs) are a
     sc:url "https://github.com/metaOmics/metaOmics" .
 
 <https://bio.tools/MetaQUBIC> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3174,
         edam:topic_3308,
@@ -46894,27 +37785,8 @@ Ribosomally synthesized and post-translationally modified peptides (RiPPs) are a
     sc:url "https://github.com/OSU-BMBL/metaqubic" ;
     biotools:primaryContact "Qin Ma" .
 
-<https://bio.tools/MetaQUBIC_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0769,
-        edam:topic_3174,
-        edam:topic_3308 ;
-    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTZ696>,
-        "pubmed:31580397" ;
-    sc:description """a computational pipeline for gene-level functional profiling of metagenome and metatranscriptome.
-
-Bioinformatics (2019) doi: 10.1093 bioinformatics btz414, 00, 1 4.
-
-||| HOMEPAGE MISSING!.
-
-||| NAME EQUAL TO (PUB. DIFFERENT) bio.tools/MetaQUBIC.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'btz414'""" ;
-    sc:featureList edam:operation_2495 ;
-    sc:name "MetaQUBIC_autogenerated" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31580397" .
-
 <https://bio.tools/MetaR> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_3170,
@@ -46937,7 +37809,7 @@ bioinformaticians who wish to package state of the art analysis methods into use
     sc:url "http://metaR.campagnelab.org" .
 
 <https://bio.tools/MetaSanity> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0769,
@@ -46959,7 +37831,7 @@ MetaSanity v1.1.1 provides a unified workflow for genome assessment and function
     sc:url "https://github.com/cjneely10/MetaSanity" .
 
 <https://bio.tools/MetaSpark> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3174,
@@ -46981,7 +37853,7 @@ MetaSanity v1.1.1 provides a unified workflow for genome assessment and function
         "Jing Luo" .
 
 <https://bio.tools/MetaTOR> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3174,
@@ -46998,7 +37870,7 @@ MetaSanity v1.1.1 provides a unified workflow for genome assessment and function
     sc:url "https://github.com/koszullab/metaTOR" .
 
 <https://bio.tools/MetaboList> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3172,
@@ -47014,7 +37886,7 @@ MetaSanity v1.1.1 provides a unified workflow for genome assessment and function
     sc:url "https://CRAN.R-project.org/package=MetaboList" .
 
 <https://bio.tools/MetaboPath_View> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3172 ;
     sc:description "Graphical visualization tool for metabolomics and genomic data within metabolic pathways" ;
@@ -47023,7 +37895,7 @@ MetaSanity v1.1.1 provides a unified workflow for genome assessment and function
     sc:url "https://prf.jcu.cz/mpv" .
 
 <https://bio.tools/Metabolic_Disassembler> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0602,
@@ -47043,20 +37915,8 @@ The Metabolic Disassembler is a Python package to automatically predict a combin
     sc:name "Metabolic Disassembler" ;
     sc:url "https://github.com/the-metabolic-disassembler/metadisassembler" .
 
-<https://bio.tools/Metabolomics_Workbench> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0153,
-        edam:topic_3172,
-        edam:topic_3417 ;
-    sc:citation <https://doi.org/10.1016/J.DIB.2019.103966>,
-        "pmcid:PMC6723204",
-        "pubmed:31508459" ;
-    sc:description "> LOW CONFIDENCE! | Lipid profiling dataset of the Wnt3a-induced optic nerve regeneration | About the Metabolomics Workbench: The National Institutes of Health (NIH) Common Fund Metabolomics Program was developed with the goal of increasing national capacity in metabolomics by supporting the development of next generation technologies, providing training and mentoring opportunities, increasing the inventory and availability of high quality reference standards, and promoting data sharing and collaboration. In support of this effort, the Metabolomics Program's Data Repository and Coordinating Center (DRCC), housed at the San Diego Supercomputer Center (SDSC), University of California, San Diego, has developed the Metabolomics Workbench. The Metabolomics Workbench will serve as a national and international repository for metabolomics data and metadata and will provide analysis tools and access to metabolite standards, protocols, tutorials, training, and more" ;
-    sc:featureList edam:operation_3891 ;
-    sc:name "Metabolomics Workbench" ;
-    sc:url "http://www.metabolomicsworkbench.org" .
-
 <https://bio.tools/Metadata_Editor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0219 ;
     sc:description "FAIR metadata editor for guiding the user through the creation of FAIR Data Point metadata." ;
@@ -47066,7 +37926,7 @@ The Metabolic Disassembler is a Python package to automatically predict a combin
     sc:url "https://editor.fair-dtls.surf-hosted.nl/" .
 
 <https://bio.tools/Metage2Metabo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0602,
@@ -47092,13 +37952,13 @@ Free document hosting provided by Read the Docs""" ;
     sc:url "https://github.com/AuReMe/metage2metabo" .
 
 <https://bio.tools/Metagenomic_read_binning_using_sparse_coding> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "This code implements a pre-assembly binning scheme leveraging sparse dictionary learning and matrix factorization to solve sparse decomposition problems arising in the field of metagenomics" ;
     sc:name "Metagenomic read binning using sparse coding" ;
     sc:url "https://gitlab.com/kyrgyzov/lsa_slurm" .
 
 <https://bio.tools/Metandem> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -47119,7 +37979,7 @@ Metandem is a free online data analysis platform for mass spectrometry-based iso
     sc:url "http://metandem.com/web/" .
 
 <https://bio.tools/Metapop> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2885,
@@ -47140,7 +38000,7 @@ Metandem is a free online data analysis platform for mass spectrometry-based iso
         "Jean-Paul Soularue" .
 
 <https://bio.tools/Metascape> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0602,
@@ -47163,7 +38023,7 @@ Metandem is a free online data analysis platform for mass spectrometry-based iso
     sc:url "http://metascape.org/gp/index.html#/main/step1" .
 
 <https://bio.tools/MethBase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_3173,
@@ -47182,7 +38042,7 @@ Metandem is a free online data analysis platform for mass spectrometry-based iso
     sc:url "http://smithlabresearch.org/software/methbase/" .
 
 <https://bio.tools/MethylCal> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3295,
@@ -47204,22 +38064,8 @@ Metandem is a free online data analysis platform for mass spectrometry-based iso
     biotools:primaryContact "Leonardo Bottolo",
         "Verena Zuber" .
 
-<https://bio.tools/MethylMix_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0659,
-        edam:topic_3295,
-        edam:topic_3360 ;
-    sc:citation <https://doi.org/10.1186/S12967-019-2068-Z>,
-        "pmcid:PMC6764142",
-        "pubmed:31558162" ;
-    sc:description "> MEDIUM CONFIDENCE! | > NAME EQUAL TO (PUB. DIFFERENT) bio.tools/methylmix | > CORRECT NAME OF TOOL COULD ALSO BE 'LUAD', 'methylation-driven' | Methylation and transcriptome analysis reveal lung adenocarcinoma-specific diagnostic biomarkers | To install this package, start R and enter: | ## try http if https is not available | source(\"https://bioconductor.org/biocLite.R\") | MethylMix: Identifying methylation driven cancer genes | In most cases, you don't need to download the package archive at all | MethylMix is an algorithm implemented to identify hyper and hypomethylated genes for a disease" ;
-    sc:featureList edam:operation_0417,
-        edam:operation_2495,
-        edam:operation_3207 ;
-    sc:name "MethylMix_autogenerated" ;
-    sc:url "https://bioconductor.riken.jp/packages/3.1/bioc/html/MethylMix.html" .
-
 <https://bio.tools/MethylSeqDesign> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3295,
         edam:topic_3518,
@@ -47241,7 +38087,7 @@ Metandem is a free online data analysis platform for mass spectrometry-based iso
     biotools:primaryContact "George Tseng" .
 
 <https://bio.tools/MethylToSNP> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0632,
         edam:topic_2885,
@@ -47264,19 +38110,8 @@ This is the developer version of Bioconductor package MethylToSNP. Install in R
     sc:name "MethylToSNP" ;
     sc:url "https://github.com/elnitskilab/MethylToSNP" .
 
-<https://bio.tools/MetroNome> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0625,
-        edam:topic_3303,
-        edam:topic_3337 ;
-    sc:citation <https://doi.org/10.1101/769646> ;
-    sc:description "> MEDIUM CONFIDENCE! | MetroNome — a visual data exploration platform for integrating human genotypic and phenotypic data across diseases | Genomic Data Exploration platform from the New York Genome Center | Visual Data Exploration for Genomic Medicine | The MetroNome(tm) project is in process of OSS conversation and will be available here once released" ;
-    sc:featureList edam:operation_3196 ;
-    sc:license "BSD-3-Clause" ;
-    sc:name "MetroNome" ;
-    sc:url "https://metronome.nygenome.org" .
-
 <https://bio.tools/MetumpX> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3172,
@@ -47297,17 +38132,8 @@ Installation • Authors • License • Revision History""" ;
     sc:name "MetumpX" ;
     sc:url "https://github.com/hasaniqbal777/MetumpX-bin" .
 
-<https://bio.tools/Mezurio_smartphone_application> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0625,
-        edam:topic_3399,
-        edam:topic_3419 ;
-    sc:citation <https://doi.org/10.1101/19005124> ;
-    sc:description "> LOW CONFIDENCE! | Evaluating the feasibility of frequent digital cognitive assessment in the PREVENT dementia study | a smartphone app for clinical research studies | The Mezurio app lets you complete interactive, scientifically valuable measurement tasks. It’s designed to be used as part of a research study. It helps you become an even more valuable part of that research by letting you contribute new kinds of data: quickly, frequently, and from the comfort of your own home" ;
-    sc:name "Mezurio smartphone application" ;
-    sc:url "https://mezur.io" .
-
 <https://bio.tools/MiCA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3382,
@@ -47325,7 +38151,7 @@ Gene expression microarrays capture a complete image of all the transcriptional
     sc:url "http://irzamsarfraz.com/mica/" .
 
 <https://bio.tools/MiDRMpol> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_3168,
@@ -47341,14 +38167,14 @@ Gene expression microarrays capture a complete image of all the transcriptional
 
 <https://bio.tools/MiGMAP> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_2182" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_2830 ;
@@ -47366,7 +38192,7 @@ Gene expression microarrays capture a complete image of all the transcriptional
     biotools:primaryContact "Mikhail Shugay" .
 
 <https://bio.tools/MiPepid> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0659,
@@ -47388,7 +38214,7 @@ Given a fasta file containing DNA fasta sequences, for each sequence, MiPepid wi
     sc:url "https://github.com/MindAI/MiPepid" .
 
 <https://bio.tools/MiStImm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_2830,
         edam:topic_3400,
@@ -47410,14 +38236,14 @@ Given a fasta file containing DNA fasta sequences, for each sequence, MiPepid wi
 
 <https://bio.tools/MiXCR> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_2182" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_2830 ;
@@ -47436,7 +38262,7 @@ Given a fasta file containing DNA fasta sequences, for each sequence, MiPepid wi
     sc:url "https://milaboratory.com/software/mixcr/" .
 
 <https://bio.tools/MicroHibro> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3301 ;
     sc:citation <https://doi.org/10.1016/j.ijfoodmicro.2018.10.007>,
@@ -47453,7 +38279,7 @@ Given a fasta file containing DNA fasta sequences, for each sequence, MiPepid wi
     sc:url "http://www.microhibro.com/" .
 
 <https://bio.tools/MicroPro> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3174,
         edam:topic_3697,
@@ -47469,72 +38295,57 @@ Given a fasta file containing DNA fasta sequences, for each sequence, MiPepid wi
     sc:name "MicroPro" ;
     sc:url "https://github.com/zifanzhu/MicroPro" .
 
-<https://bio.tools/MicroRNAsmiRNAsare> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0659,
-        edam:topic_0780,
-        edam:topic_3512 ;
-    sc:citation <https://doi.org/10.1101/770875> ;
-    sc:description "> VERY_LOW CONFIDENCE! | > HOMEPAGE MISSING! | > CORRECT NAME OF TOOL COULD ALSO BE 'genes,42', '4014', 'miRNAs', 'G...,GC' | Discovery Function Labels Based On Numerical Features Of MicroRNA Found In Plant | Abstract MicroRNAs(miRNAs),are a class of small endogenous non-coding RNAs that play Important post-transcriptional regulation role by degrading targeted mRNAs or repressing mRNA translation. We screened 84 miRNAs belonging to 21 conserved family from 4014 miRNAs in miRBase database which distributed in 47 plant species. Of the predicted 274 target genes,42 GO terms were found in the Gene Ontology. With the 135 numerical features which extracted by perl program, the difference significantly result of ANOVA (P<0.001) and multiple comparison show that the function labels G…,GC content and Helix in biological process, cellular component and biological function, respectively" ;
-    sc:featureList edam:operation_0463,
-        edam:operation_3501,
-        edam:operation_3792 ;
-    sc:name "MicroRNAs(miRNAs),are" ;
-    sc:url "https://doi.org/10.1101/770875" .
-
 <https://bio.tools/MicroScope_platform> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3495" ;
-            sc:name "RNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3495" ],
+            sc:additionalType "http://edamontology.org/data_3495" ;
+            sc:encodingFormat "http://edamontology.org/format_1931" ;
+            sc:name "RNA sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3495" ;
-            sc:name "RNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3495" ],
+            sc:additionalType "http://edamontology.org/data_3495" ;
+            sc:encodingFormat "http://edamontology.org/format_1931" ;
+            sc:name "RNA sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1098" ;
-            sc:name "RefSeq accession" ;
-            sc:sameAs "http://edamontology.org/data_1098" ],
+            sc:additionalType "http://edamontology.org/data_1098" ;
+            sc:name "RefSeq accession" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0925" ;
-            sc:name "Sequence assembly" ;
-            sc:sameAs "http://edamontology.org/data_0925" ],
+            sc:additionalType "http://edamontology.org/data_0925" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence assembly" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1098" ;
-            sc:name "RefSeq accession" ;
-            sc:sameAs "http://edamontology.org/data_1098" ],
+            sc:additionalType "http://edamontology.org/data_0925" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence assembly" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0925" ;
-            sc:name "Sequence assembly" ;
-            sc:sameAs "http://edamontology.org/data_0925" ],
+            sc:additionalType "http://edamontology.org/data_3495" ;
+            sc:encodingFormat "http://edamontology.org/format_1931" ;
+            sc:name "RNA sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0925" ;
-            sc:name "Sequence assembly" ;
-            sc:sameAs "http://edamontology.org/data_0925" ],
+            sc:additionalType "http://edamontology.org/data_0925" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence assembly" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3495" ;
-            sc:name "RNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3495" ] ;
+            sc:additionalType "http://edamontology.org/data_1098" ;
+            sc:name "RefSeq accession" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ],
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_1936" ;
+            sc:name "Annotation track" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2955" ;
-            sc:name "Sequence report" ;
-            sc:sameAs "http://edamontology.org/data_2955" ],
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_1936" ;
+            sc:name "Annotation track" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2166" ;
-            sc:name "Sequence composition plot" ;
-            sc:sameAs "http://edamontology.org/data_2166" ],
+            sc:additionalType "http://edamontology.org/data_2955" ;
+            sc:encodingFormat "http://edamontology.org/format_1936" ;
+            sc:name "Sequence report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ],
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_1936" ;
+            sc:name "Annotation track" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2166" ;
+            sc:name "Sequence composition plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Bioinformatics portal",
         "Web application",
         "Workbench" ;
@@ -47590,7 +38401,7 @@ Given a fasta file containing DNA fasta sequences, for each sequence, MiPepid wi
     biotools:primaryContact "LABGeM - CEA/Genosocope - UMR8030" .
 
 <https://bio.tools/MicroWineBar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3174,
         edam:topic_3697,
@@ -47605,7 +38416,7 @@ Given a fasta file containing DNA fasta sequences, for each sequence, MiPepid wi
     sc:url "https://github.com/klincke/MicroWineBar" .
 
 <https://bio.tools/Microbe_Directory> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0625,
@@ -47622,7 +38433,7 @@ Microbial communities are an incredibly fascinating and genetically diverse set
     sc:url "https://microbe.directory" .
 
 <https://bio.tools/MicrobioLink> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0128,
@@ -47639,32 +38450,8 @@ Abstract Microbiome-host interactions are important to nearly all living organis
     sc:name "MicrobioLink" ;
     sc:url "https://github.com/korcsmarosgroup/HMIpipeline" .
 
-<https://bio.tools/MicrobiomeBestPracticeReview> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0196,
-        edam:topic_0659,
-        edam:topic_3174,
-        edam:topic_3697,
-        edam:topic_3837 ;
-    sc:citation <https://doi.org/10.1093/BIB/BBZ155>,
-        "pubmed:31848574" ;
-    sc:description """Current challenges and best-practice protocols for microbiome analysis.
-
-Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing.
-
-This review paper (https://doi.org/10.1093/bib/bbz155) aims to provide a comprehensive workflow to perform amplicon and shotgun metagenomics analysis. There are two workflows provided. First workflow for amplicon, using the standard mothur and dada2, and along with it some standard visualization are provided for the processed data. Second workflow for metagenomics, using a variety of tools openly available which have been stitched together to form a usable pipeline.
-
-Both the workflows are controlled by bash scripts: amplicon_analysis.sh and metagenomics_analysis.sh.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'best-practice', 'microbiome' (bio.tools/microbiome), 'flood', 'binning'""" ;
-    sc:featureList edam:operation_0310,
-        edam:operation_3184,
-        edam:operation_3460 ;
-    sc:license "MIT" ;
-    sc:name "MicrobiomeBestPracticeReview" ;
-    sc:url "https://github.com/grimmlab/MicrobiomeBestPracticeReview" .
-
 <https://bio.tools/MicrobiomeR> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3174,
         edam:topic_3697 ;
@@ -47682,7 +38469,7 @@ Both the workflows are controlled by bash scripts: amplicon_analysis.sh and meta
     biotools:primaryContact <http://orcid.org/0000-0001-8096-0180> .
 
 <https://bio.tools/Microdatasus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0611,
         edam:topic_3063,
@@ -47695,47 +38482,20 @@ Both the workflows are controlled by bash scripts: amplicon_analysis.sh and meta
     sc:name "Microdatasus" ;
     sc:url "http://datasus.saude.gov.br/" .
 
-<https://bio.tools/Microndata> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0769,
-        edam:topic_3382,
-        edam:topic_3489 ;
-    sc:citation <https://doi.org/10.1007/S10735-019-09850-Y>,
-        "pubmed:31667690" ;
-    sc:description """A simple, web-based repository for the management, access and analysis of micrographic images.
-
-Microscopy is advancing at a rapid pace, enabling high-speed, high-resolution analyses to be conducted in a wide range of cellular contexts. For example, the capacity to quickly capture high-resolution images from multiple optical sections over multiple channels with confocal microscopy has allowed researchers to gain deeper understanding of tissue morphology via techniques such as three-dimensional rendering, as have more recent advances such as lattice light sheet microscopy and superresolution structured illumination microscopy. With this, though, comes the challenge of storing, curating, analysing and sharing data. While there are ways in which this has been attempted previously, few approaches have provided a central repository in which all of these different aspects of microscopy can be seamlessly integrated""" ;
-    sc:featureList edam:operation_3443,
-        edam:operation_3552,
-        edam:operation_3553 ;
-    sc:name "Microndata" ;
-    sc:url "http://www.microndata.net/" .
-
 <https://bio.tools/Midcor> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrum" ;
-            sc:sameAs "http://edamontology.org/data_0943" ],
-        [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ],
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:encodingFormat "http://edamontology.org/format_3835" ;
+            sc:name "Mass spectrometry data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ],
-        [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrum" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3835" ;
+            sc:name "Mass spectrum" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrum" ;
-            sc:sameAs "http://edamontology.org/data_0943" ],
-        [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrum" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3835" ;
+            sc:name "Mass spectrum" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3172,
         edam:topic_3955 ;
@@ -47753,30 +38513,8 @@ Microscopy is advancing at a rapid pace, enabling high-speed, high-resolution an
     sc:softwareVersion "0.0.1.0" ;
     sc:url "https://github.com/seliv55/ramidcor" .
 
-<https://bio.tools/Min3> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0659,
-        edam:topic_2885,
-        edam:topic_3170,
-        edam:topic_3512 ;
-    sc:citation <https://doi.org/10.1142/S021972001950032X>,
-        "pubmed:31856668" ;
-    sc:description """Predict microRNA target gene using an improved binding-site representation method and support vector machine.
-
-microRNA.org - Targets and Expression.
-
-Predicted microRNA targets & target downregulation scores. Experimentally observed expression patterns.
-
-August 2010 Release Last Update: 2010-11-01 [ release notes ].
-
-fuzzy search ("let-7" will match "let-7a", "let-7b", etc.)""" ;
-    sc:featureList edam:operation_0463,
-        edam:operation_2421,
-        edam:operation_2575 ;
-    sc:name "Min3" ;
-    sc:url "http://microRNA.org" .
-
 <https://bio.tools/MinION> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3293,
@@ -47799,20 +38537,8 @@ This repository contains the primary Nextflow workflow (minion_bacterial.nf) for
     sc:name "MinION" ;
     sc:url "https://github.com/jvolkening/minion_bacterial" .
 
-<https://bio.tools/MinIONTM> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0780,
-        edam:topic_3174,
-        edam:topic_3837 ;
-    sc:citation <https://doi.org/10.1101/777706> ;
-    sc:description "> LOW CONFIDENCE! | > CORRECT NAME OF TOOL COULD ALSO BE 'Sourmash MetaMaps', 'strain-level', 'MetaMaps', 'LINbase' | Strain-level identification of bacterial tomato pathogens directly from metagenomic sequences | MinION is a powerful, portable sequencing device that delivers immediate access to gigabases of long-read data. The pocked-sized, USB-powered MinION allows you to sequence anything, anywhere — from the bench to the field — with real-time analysis providing immediate access to actionable results. The same long-read, direct RNA and DNA sequencing workflows are available across our products, providing truly scalable sequencing. Download the brochure to view detailed information about the features and benefits of MinION" ;
-    sc:featureList edam:operation_0310,
-        edam:operation_3185,
-        edam:operation_3840 ;
-    sc:name "MinIONTM" ;
-    sc:url "http://nanoporetech.com/resource-centre/minion-brochure" .
-
 <https://bio.tools/Minerva> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3174,
@@ -47834,7 +38560,7 @@ This repository contains the primary Nextflow workflow (minion_bacterial.nf) for
     biotools:primaryContact "David C. Danko" .
 
 <https://bio.tools/MiniScrub> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3174,
@@ -47854,41 +38580,8 @@ BACKGROUND:Long read sequencing technologies such as Oxford Nanopore can greatly
     sc:name "MiniScrub" ;
     sc:url "https://bitbucket.org/berkeleylab/jgi-miniscrub" .
 
-<https://bio.tools/Minor_intron_splicing_revisited> a sc:SoftwareApplication ;
-    sc:additionalType "Web application" ;
-    sc:applicationSubCategory edam:topic_0659,
-        edam:topic_3320,
-        edam:topic_3512 ;
-    sc:citation <https://doi.org/10.1186/S12864-019-6046-X>,
-        "pmcid:PMC6717393",
-        "pubmed:31470809" ;
-    sc:description "Identification of new minor intron-containing genes and tissue-dependent retention and alternative splicing of minor introns | Welcome to the minor intron database (MIDB)! | Minor introns, or U12-type introns, were initially identified based on their divergent terminal dinucleotide sequences (Jackson, 1991) | MIDB contains the most recent information on minor introns and the genes they are found in, also called MIGs (minor intron-containing genes) | Species: Mus musculus Homo sapiens All" ;
-    sc:featureList edam:operation_0264,
-        edam:operation_0446,
-        edam:operation_3501 ;
-    sc:name "Minor intron splicing revisited" ;
-    sc:url "https://midb.pnb.uconn.edu" .
-
-<https://bio.tools/MinuteClinic> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3063,
-        edam:topic_3318,
-        edam:topic_3399 ;
-    sc:citation <https://doi.org/10.1093/GERONI/IGZ038.538>,
-        "pmcid:PMC6845822" ;
-    sc:description """IMPLEMENTING THE AGE-FRIENDLY HEALTH SYSTEM INTO CVSMINUTE CLINICS.
-
-AbstractEach day, 10,000 individuals in the United States turn 65 and nearly 30% of our nation’s 884 million ambulatory care visits involve patients ages 65 and older. With this trend, the use of convenient care settings for treatment for chronic conditions associated with aging such as diabetes and hypertension is emerging. The need for the delivery of age-friendly care in convenient care settings is essential to ensure high quality and safe care. CVS MinuteClinic® and the Institute for Healthcare Improvement (IHI) will present the plan and preliminary findings for the extension of the IHI’s Age-Friendly Health Systems initiative into the CVS MinuteClinic.
-
-||| HOMEPAGE BROKEN!.
-
-||| COMMON LINK WITH (PUB. & NAME DIFFERENT) bio.tools/Diffeomorphic (IC.OUP.COM).
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'Age-Friendly', 'IHI Age-Friendly', 'Epic', 'Clinic'""" ;
-    sc:name "MinuteClinic" ;
-    sc:url "http://ic.oup.com" .
-
 <https://bio.tools/Miso_R> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3172 ;
@@ -47907,7 +38600,7 @@ AbstractEach day, 10,000 individuals in the United States turn 65 and nearly 30%
     biotools:primaryContact "Yonghui Dong" .
 
 <https://bio.tools/MitoIMP> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0654,
@@ -47924,7 +38617,7 @@ AbstractEach day, 10,000 individuals in the United States turn 65 and nearly 30%
     sc:url "https://github.com/omics-tools/mitoimp" .
 
 <https://bio.tools/MitoImpute> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_3168,
         edam:topic_3384,
@@ -47943,25 +38636,8 @@ AbstractEach day, 10,000 individuals in the United States turn 65 and nearly 30%
     sc:url "https://github.com/sjfandrews/MitoImpute" ;
     biotools:primaryContact "Shea J. Andrews" .
 
-<https://bio.tools/MitoTrack> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0203,
-        edam:topic_0625,
-        edam:topic_3382,
-        edam:topic_3512 ;
-    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTZ717>,
-        "pubmed:31580394" ;
-    sc:description """user-friendly semi-automatic software for lineage tracking in living embryos.
-
-MOTIVATION:During development, progenitor cells undergo multiple rounds of cellular divisions during which transcriptional programs must be faithfully propagated. Investigating the timing of transcriptional activation, which is a highly stochastic phenomenon, requires the analysis of large amounts of data. In order to perform automatic image analysis of transcriptional activation, we developed a software that segments and tracks both small and large objects, leading the user from raw data up to the results in their final form. RESULTS:MitoTrack is a user-friendly open-access integrated software that performs the specific dual task of reporting the precise timing of transcriptional activation while keeping lineage tree history for each nucleus of a living developing embryo.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'AVAILABILITY:MitoTrack', 'RESULTS:MitoTrack'""" ;
-    sc:name "MitoTrack" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31580394" .
-
 <https://bio.tools/MixMPLN> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3697,
@@ -47976,7 +38652,7 @@ MOTIVATION:During development, progenitor cells undergo multiple rounds of cellu
     sc:url "https://github.com/sahatava/MixMPLN" .
 
 <https://bio.tools/Mizutama> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3300,
         edam:topic_3382,
@@ -47994,7 +38670,7 @@ MOTIVATION:During development, progenitor cells undergo multiple rounds of cellu
     biotools:primaryContact "Gregorio Moreno-Rueda" .
 
 <https://bio.tools/MoBPS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0199,
@@ -48011,7 +38687,7 @@ This repository contains our R-package MoBPS and the associated packages (miracu
     sc:url "https://github.com/tpook92/MoBPS" .
 
 <https://bio.tools/MoChA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0625,
@@ -48034,7 +38710,7 @@ This command will create a list of variants falling within segmental duplication
     sc:url "https://github.com/freeseek/mocha" .
 
 <https://bio.tools/MoMI-G> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0622,
@@ -48058,7 +38734,7 @@ A genome graph browser for visualization of structural variants (SVs) as a varia
     sc:url "https://github.com/MoMI-G/MoMI-G" .
 
 <https://bio.tools/MoRF> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
@@ -48074,7 +38750,7 @@ A genome graph browser for visualization of structural variants (SVs) as a varia
     sc:url "https://gsponerlab.msl.ubc.ca/software/morf_chibi/" .
 
 <https://bio.tools/MoRFMPM> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0154,
@@ -48093,7 +38769,7 @@ BACKGROUND:Molecular recognition features (MoRFs) are one important type of diso
     sc:url "https://github.com/HHJHgithub/MoRFs_MPM/tree/master/github_code_MPM_MoRFs" .
 
 <https://bio.tools/MobCal-MPI> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0153,
         edam:topic_3520 ;
@@ -48112,22 +38788,8 @@ BACKGROUND:Molecular recognition features (MoRFs) are one important type of diso
     biotools:primaryContact "C. Ieritano",
         "W. S. Hopkins" .
 
-<https://bio.tools/Mobilum> a sc:SoftwareApplication ;
-    sc:citation <https://doi.org/10.21037/MHEALTH.2019.09.15>,
-        "pmcid:PMC6917555",
-        "pubmed:31853450" ;
-    sc:description """new mobile app to engage visuospatial processing for the reduction of intrusive visual memories.
-
-Intrusive memories are a key symptom of posttraumatic stress disorder (PTSD), a prevalent condition causing considerable personal suffering, and entailing large direct and indirect societal costs. While effective treatment options for PTSD exist, on a global scale they are not readily available to many patients in need. In the last years, several studies have shown that the computer game Tetris can reduce the frequency of intrusive memories in healthy subjects (after a trauma analogue), in populations at high risk of developing PTSD, as well as in patients already suffering from PTSD. The presumed mechanism behind this effect is that both Tetris and intrusions require-and therefore compete for-limited visuospatial working memory resources.
-
-||| HOMEPAGE MISSING!""" ;
-    sc:featureList edam:operation_0337,
-        edam:operation_2409 ;
-    sc:name "Mobilum" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31853450" .
-
 <https://bio.tools/ModCell2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2229,
@@ -48147,7 +38809,7 @@ Intrusive memories are a key symptom of posttraumatic stress disorder (PTSD), a
     biotools:primaryContact "TrinhLab - University of Tennessee Knoxville" .
 
 <https://bio.tools/ModEx> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0218,
@@ -48172,26 +38834,21 @@ Saman Farahmand, Todd Riley, Kourosh Zarringhalam, "ModEx: A text mining system
 
 <https://bio.tools/ModMine> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ],
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:name "Sequence features" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2353" ;
-            sc:name "Ontology data" ;
-            sc:sameAs "http://edamontology.org/data_2353" ] ;
+            sc:additionalType "http://edamontology.org/data_2353" ;
+            sc:name "Ontology data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3786" ;
-            sc:name "Query script" ;
-            sc:sameAs "http://edamontology.org/data_3786" ],
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:name "Sequence features" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ],
+            sc:additionalType "http://edamontology.org/data_3786" ;
+            sc:name "Query script" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3753" ;
-            sc:name "Over-representation data" ;
-            sc:sameAs "http://edamontology.org/data_3753" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3753" ;
+            sc:name "Over-representation data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application",
         "Web service" ;
@@ -48215,7 +38872,7 @@ Saman Farahmand, Todd Riley, Kourosh Zarringhalam, "ModEx: A text mining system
     sc:url "http://intermine.modencode.org/release-33" .
 
 <https://bio.tools/ModelExplorer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0625,
@@ -48238,7 +38895,7 @@ Saman Farahmand, Todd Riley, Kourosh Zarringhalam, "ModEx: A text mining system
     biotools:primaryContact "Eivind Almaas" .
 
 <https://bio.tools/ModelTest-NG> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3293,
@@ -48252,7 +38909,7 @@ Saman Farahmand, Todd Riley, Kourosh Zarringhalam, "ModEx: A text mining system
     sc:url "https://github.com/ddarriba/modeltest" .
 
 <https://bio.tools/ModelX> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0154,
@@ -48275,59 +38932,8 @@ ModelX is a toolsuite for biomolecular modeling inspired on the assumption that
     sc:name "ModelX" ;
     sc:url "http://modelx.crg.es" .
 
-<https://bio.tools/Model_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0218,
-        edam:topic_0602,
-        edam:topic_0621 ;
-    sc:citation <https://doi.org/10.1186/S12859-019-2987-Y>,
-        "pmcid:PMC6731580",
-        "pubmed:31492098" ;
-    sc:description "> LOW CONFIDENCE! | > NAME (Model) SIMILAR TO (PUB. DIFFERENT) bio.tools/model (MoDEL) | > CORRECT NAME OF TOOL COULD ALSO BE 'models' | Model annotation and discovery with the Physiome Model Repository | A web-based epithelial transport discovery, exploration and recommendation tool | Model discovery with the Physiome Model Repository | Model discovery tool is a web-based epithelial transport discovery, exploration and recommendation tool. It allows users to discover, explore and recommend CellML models of interest. This tool is deployed at this address: http://model-discovery-tool.nectar.auckland.ac.nz; as a demonstration of the capabilities described is the paper: https://doi.org/10.1186/s12859-019-2987-y" ;
-    sc:featureList edam:operation_2422,
-        edam:operation_2426,
-        edam:operation_3431 ;
-    sc:license "MIT" ;
-    sc:name "Model_autogenerated" ;
-    sc:url "https://github.com/dewancse/model-discovery-tool" .
-
-<https://bio.tools/Modern_Research_Data_Portal> a sc:SoftwareApplication ;
-    sc:additionalType "Command-line tool" ;
-    sc:applicationSubCategory edam:topic_3263,
-        edam:topic_3316,
-        edam:topic_3489 ;
-    sc:citation <https://doi.org/10.7287/PEERJ.PREPRINTS.3194V2> ;
-    sc:description """A design pattern for networked, data-intensive science.
-
-Hello Guest Register Now Sign In : Forgot Password?.
-
-BPRC Arctic System Reanalysis (ASR).
-
-ECMWF 20th Century Reanalysis (ERA-20C)""" ;
-    sc:featureList edam:operation_0337,
-        edam:operation_3760 ;
-    sc:name "Modern Research Data Portal" ;
-    sc:url "https://docs.globus.org/mrdp" .
-
-<https://bio.tools/ModiBodies> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0154,
-        edam:topic_0749,
-        edam:topic_2830,
-        edam:topic_3297,
-        edam:topic_3400 ;
-    sc:citation <https://doi.org/10.1101/820373> ;
-    sc:description """A computational method for modifying nanobodies to improve their antigen binding affinity and specificity.
-
-Abstract Nanobodies are special derivatives of antibodies, which consist of only a single chain. Their hydrophilic side prevents them from having the solubility and aggregation problems of conventional antibodies, and they retain the similar size and affinity of the binding area to the antigen. Nanobodies have become of considerable interest for next-generation biotechnological tools for antigen recognition. They can be easily engineered due to their high stability and compact size. They have three complementarity determining regions, CDRs, which are enlarged to provide a similar binding surface to that of regular antibodies. The binding residues are more exposed to the environment.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'Nanobodies', 'CDRs', 'nanobodies.1', '2VYR'""" ;
-    sc:featureList edam:operation_3436 ;
-    sc:name "ModiBodies" ;
-    sc:url "https://doi.org/10.1101/820373" .
-
 <https://bio.tools/MolArt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0601 ;
@@ -48342,37 +38948,16 @@ Abstract Nanobodies are special derivatives of antibodies, which consist of only
     sc:url "https://cusbg.github.io/MolArt/" ;
     biotools:primaryContact <https://orcid.org/0000-0003-4679-0557> .
 
-<https://bio.tools/MolFind2> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0154,
-        edam:topic_0769,
-        edam:topic_3047,
-        edam:topic_3172,
-        edam:topic_3520 ;
-    sc:citation <https://doi.org/10.1007/978-1-0716-0030-6_18>,
-        "pubmed:31729668" ;
-    sc:description """A Protocol for Acquiring and Integrating MS3 Data to Improve In Silico Chemical Structure Elucidation for Metabolomics.
-
-Structure elucidation of metabolites (<1000 Da) in biofluids is extremely challenging due to the diversity and complexity of chemical structure space. Generally, due to lack of reference tandem mass data (MS2), in silico fragmenters are used to rank candidates acquired from chemical databases as a function on how well they explain an experimental collision-induced dissociation spectrum. However, multistage fragmentation data (i.e., MS3) have not been adequately utilized in current metabolomics structure elucidation pipelines. To address this shortcoming, here we describe an experimental (nontargeted direct infusion ion mobility-mass spectrometry-based) and computational workflow to acquire and utilize multistage mass (MS3) spectrometry data for database-assisted structure elucidation.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'MS3'""" ;
-    sc:featureList edam:operation_3629,
-        edam:operation_3803,
-        edam:operation_3907 ;
-    sc:name "MolFind2" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31729668" .
-
 <https://bio.tools/MolMeDB> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0990" ;
-            sc:name "Compound name" ;
-            sc:sameAs "http://edamontology.org/data_0990" ] ;
+            sc:additionalType "http://edamontology.org/data_0990" ;
+            sc:encodingFormat "http://edamontology.org/format_1964" ;
+            sc:name "Compound name" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2531" ;
-            sc:name "Experiment report" ;
-            sc:sameAs "http://edamontology.org/data_2531" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2531" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Experiment report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0202,
         edam:topic_3068,
@@ -48396,37 +38981,8 @@ Structure elucidation of metabolites (<1000 Da) in biofluids is extremely challe
     sc:url "http://molmedb.upol.cz" ;
     biotools:primaryContact <http://orcid.org/0000-0001-9472-2589> .
 
-<https://bio.tools/MolProbity_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0077,
-        edam:topic_0154,
-        edam:topic_0593,
-        edam:topic_2828 ;
-    sc:citation <https://doi.org/10.1002/PRO.3786>,
-        "pmcid:PMC6933861",
-        "pubmed:31724275" ;
-    sc:description """CaBLAM for CryoEM backbone, UnDowser to rethink "waters," and NGL Viewer to recapture online 3D graphics.
-
-File Upload/Retrieval (more options).
-
-CCTBX, which powers this version of MolProbity (4.2), requires stricter adherence to PDB format. If you are having trouble with version 4.2 try using MolProbity4 legacy version 4.02 at http://rutile.biochem.duke.edu. Note that not all features are supported on legacy 4.02 and we suggest repairing your PDB format instead.
-
-type: PDB coords PDB coords & xray data Biol. unit (PDB only) Biol. unit & xray data (PDB only) 2Fo-Fc map (EDS) Fo-Fc map (EDS).
-
-type: PDB coords xray data (mtz format) kinemage ED map het dict.
-
-||| NAME EQUAL TO (PUB. DIFFERENT) bio.tools/molprobity.
-
-||| COMMON LINK WITH (PUB. & NAME DIFFERENT) bio.tools/Protein-sol (MANCHESTER.AC.UK).
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'NGL', 'New tools MolProbity validation', 'UnDowser'""" ;
-    sc:featureList edam:operation_0321,
-        edam:operation_0479,
-        edam:operation_3891 ;
-    sc:name "MolProbity_autogenerated" ;
-    sc:url "http://molprobity.manchester.ac.uk" .
-
 <https://bio.tools/Molecular_clock> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0199,
@@ -48444,26 +39000,8 @@ type: PDB coords xray data (mtz format) kinemage ED map het dict.
     sc:url "https://github.com/ugobas/Molecular_clock" ;
     biotools:primaryContact "Ugo Bastolla" .
 
-<https://bio.tools/Molstack> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0102,
-        edam:topic_0611,
-        edam:topic_2828 ;
-    sc:citation <https://doi.org/10.1002/PRO.3747>,
-        "pmcid:PMC6933852",
-        "pubmed:31605409" ;
-    sc:description """A platform for interactive presentations of electron density and cryo-EM maps and their interpretations.
-
-In the Special Issue on Tools for Protein Science in 2018, we presented Molstack: a concept of a cloud-based platform for sharing electron density maps and their interpretations. Molstack is a web platform that allows the interactive visualization of density maps through the simultaneous presentation of multiple datasets and models in a way that allows for easy pairwise comparison. We anticipated that the users of this conceptually simple platform would find many different uses for their projects, and we were not mistaken. We have observed researchers use Molstack to present experimental evidence for their models in the form of electron density maps, omit maps, and anomalous difference density maps. Users also employed Molstack to present alternative interpretations of densities, including rerefinements and speculative interpretations.
-
-||| HOMEPAGE MISSING!""" ;
-    sc:featureList edam:operation_0337,
-        edam:operation_2428,
-        edam:operation_2429 ;
-    sc:name "Molstack" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31605409" .
-
 <https://bio.tools/Monarch_Initiative> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0218,
@@ -48485,7 +39023,7 @@ Securely share & discuss patients with colleagues all around the world.""" ;
     sc:url "https://monarchinitiative.org" .
 
 <https://bio.tools/MonkeyLogic> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3077,
         edam:topic_3300 ;
@@ -48500,7 +39038,7 @@ Securely share & discuss patients with colleagues all around the world.""" ;
     sc:url "https://monkeylogic.nimh.nih.gov/" .
 
 <https://bio.tools/Monoallelic_Gene_Inference_from_Chromatin> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3169,
@@ -48528,7 +39066,7 @@ Securely share & discuss patients with colleagues all around the world.""" ;
         "Sébastien Vigneau" .
 
 <https://bio.tools/Monoallelic_gene_inference_from_chromatin_MaGIC> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3169,
         edam:topic_3179,
@@ -48551,29 +39089,8 @@ Securely share & discuss patients with colleagues all around the world.""" ;
         "Svetlana Vinogradova",
         "Sébastien Vigneau" .
 
-<https://bio.tools/Monsanto> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_2840,
-        edam:topic_3305,
-        edam:topic_3394 ;
-    sc:citation <https://doi.org/10.5271/SJWEH.3851>,
-        "pubmed:31486846" ;
-    sc:description "> CORRECT NAME OF TOOL COULD ALSO BE 'evidence-informed policy-making' | Public health and evidence-informed policy-making | Monsanto Ordered to Pay $289 Million in Roundup Cancer Trial | Monsanto WHO glyphosate ruling cancer | The lawsuit was the first to go to trial alleging that the company’s weedkillers cause cancer. Monsanto faces more than 5,000 similar lawsuits across the United States | It is the most widely used herbicide in the world. It is the main ingredient in their flagship product, Roundup, the bedrock on which their firm has built its economic model, its wealth and its reputation | The Monsanto Papers, Part 2 — Reaping a bitter harvest | In order to save glyphosate, the Monsanto corporation has undertaken an effort to destroy the United Nations' cancer agency by any means possible. Here is part two of an investigation from Le Monde | We've detected unusual activity from your computer network | To continue, please click the box below to let us know you're not a robot" ;
-    sc:name "Monsanto" ;
-    sc:url "https://www.nytimes.com/2018/08/10/business/monsanto-roundup-cancer-trial.html" .
-
-<https://bio.tools/MoodJumper> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0202,
-        edam:topic_3063,
-        edam:topic_3419 ;
-    sc:citation <https://doi.org/10.3389/FPUBH.2019.00220>,
-        "pmcid:PMC6694287",
-        "pubmed:31440495" ;
-    sc:description "> MEDIUM CONFIDENCE! | > HOMEPAGE MISSING! | > CORRECT NAME OF TOOL COULD ALSO BE 'mood' | An Exploration of Game Interface Preferences in Users With/Out Mood Disorder | Mental health conditions pose a major challenge to healthcare providers and society at large. The World Health Organization predicts that by 2030 mental illnesses will be the leading disease burden globally. Mental health services are struggling to meet the needs of users and arguably fail to reach large proportions of those in need. According to New Zealand Mental Health Foundation, one in five will experience a serious mood disorder, including depression, at some time in their life. Games for Health including those supporting mental health have recently gained a lot of attention" ;
-    sc:name "MoodJumper" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31440495" .
-
 <https://bio.tools/MoonDB> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0623 ;
     sc:description "MoonDB is a database containing predicted Extreme Multifunctional (EMF) proteins (i.e. proteins with several unrelated functions), as well as a set of manually curated moonlighting proteins. Moonlighting proteins are a subclass of multifunctional proteins." ;
@@ -48581,7 +39098,7 @@ Securely share & discuss patients with colleagues all around the world.""" ;
     sc:url "http://moondb.hb.univ-amu.fr/" .
 
 <https://bio.tools/MorphoCatcher> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0632,
@@ -48604,28 +39121,8 @@ Securely share & discuss patients with colleagues all around the world.""" ;
     sc:url "http://morphocatcher.ru" ;
     biotools:primaryContact "Fedor V. Shirshikov" .
 
-<https://bio.tools/MorphoLex-FR> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0621,
-        edam:topic_3489,
-        edam:topic_3810 ;
-    sc:citation <https://doi.org/10.3758/S13428-019-01297-Z>,
-        "pubmed:31676967" ;
-    sc:description """A derivational morphological database for 38,840 French words.
-
-Lexical database for ~38k French words with morphological variables.
-
-See the paper for details on each field.
-
-Mailhot, H., Wilson, M. A., Macoir, J., Deacon, S. H., & Sánchez-Gutiérrez, C. (2019). MorphoLex-FR: A derivational morphological database for 38,840 French words. Behavior Research Methods. https://doi.org/10.3758/s13428-019-01297-z""" ;
-    sc:featureList edam:operation_0224,
-        edam:operation_0337,
-        edam:operation_3659 ;
-    sc:license "CC-BY-4.0" ;
-    sc:name "MorphoLex-FR" ;
-    sc:url "https://github.com/hugomailhot/MorphoLex-FR" .
-
 <https://bio.tools/MotifAnalyzer-PDZ> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -48646,7 +39143,7 @@ PDZ domains bind the extreme C-terminus of target proteins and are critical comp
     sc:url "http://motifAnalyzerPDZ.cs.wwu.edu" .
 
 <https://bio.tools/MouseBytes> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0625,
@@ -48672,7 +39169,7 @@ Quality control (QC) procedure in MouseBytes checks the content of xml files aga
     sc:url "http://mousebytes.ca" .
 
 <https://bio.tools/Mouse_Phenome_Database> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0654,
@@ -48699,7 +39196,7 @@ Already have an account? Sign In.
     sc:url "https://phenome.jax.org" .
 
 <https://bio.tools/MrNV> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0602,
@@ -48724,7 +39221,7 @@ Phongthana Pasookhush, Charles Hindmarch, Siwaporn Longyant, Paisarn Sithigorngu
     sc:url "https://github.com/prawnseq/Mrosenbergii_MrNV_RNAseq" .
 
 <https://bio.tools/MsPAC> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0199,
@@ -48743,7 +39240,7 @@ Phongthana Pasookhush, Charles Hindmarch, Siwaporn Longyant, Paisarn Sithigorngu
     biotools:primaryContact "Oscar L. Rodriguez" .
 
 <https://bio.tools/MtBNN> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_2885,
@@ -48763,7 +39260,7 @@ The python script for MtBNN. The help information can be obtain by""" ;
     sc:url "https://github.com/Zoesgithub/MtBNN" .
 
 <https://bio.tools/MuLiMs-MCoMPAs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0154,
@@ -48785,7 +39282,7 @@ MuLiMs-MCoMPAs software is for the calculation of 3D bio macromolecular (protein
     sc:url "http://tomocomd.com/mulims-mcompas" .
 
 <https://bio.tools/MuPIPR> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0130,
@@ -48803,7 +39300,7 @@ This is the repository for "Mutation effect estimation on protein-protein intera
     sc:url "https://github.com/guangyu-zhou/MuPIPR" .
 
 <https://bio.tools/MuSiC2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0199,
@@ -48829,7 +39326,7 @@ This is the repository for "Mutation effect estimation on protein-protein intera
     biotools:primaryContact <https://orcid.org/0000-0003-1517-2975> .
 
 <https://bio.tools/Multi-netclust> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0602 ;
@@ -48846,7 +39343,7 @@ This is the repository for "Mutation effect estimation on protein-protein intera
     biotools:primaryContact "Jack A.M. Leunissen" .
 
 <https://bio.tools/Multi-omics_Visualization_Platform> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "A plug-in to the Galaxy bioinformatics workbench which enables visualization of mass spectrometry-based proteomics data integrated with genomic and/or transcriptomic sequencing data.  Useful for verifying quality of results and characterizing novel peptide sequences identified using a multi-omic proteogenomic approach." ;
     sc:isAccessibleForFree true ;
     sc:license "MIT" ;
@@ -48854,25 +39351,8 @@ This is the repository for "Mutation effect estimation on protein-protein intera
     sc:softwareHelp <https://training.galaxyproject.org/training-material/topics/proteomics/tutorials/proteogenomics-novel-peptide-analysis/tutorial.html> ;
     sc:url "https://github.com/galaxyproteomics/mvpapplication-git.git" .
 
-<https://bio.tools/MultiFRET> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_2229,
-        edam:topic_3047,
-        edam:topic_3382 ;
-    sc:citation <https://doi.org/10.3390/CELLS8121541>,
-        "pubmed:31795419" ;
-    sc:description """A Software Tool for High-Throughput Real-Time Measurement of Intensity-Based Ratio-Metric FRET.
-
-Förster resonance energy transfer (FRET) is increasingly used for non-invasive measurement of fluorescently tagged molecules in live cells. In this study, we have developed a freely available software tool MultiFRET, which, together with the use of a motorised microscope stage, allows multiple single cells to be studied in one experiment. MultiFRET is a Java plugin for Micro-Manager software, which provides real-time calculations of ratio-metric signals during acquisition and can simultaneously record from multiple cells in the same experiment. It can also make other custom-determined live calculations that can be easily exported to Excel at the end of the experiment. It is flexible and can work with multiple spectral acquisition channels.
-
-||| HOMEPAGE MISSING!""" ;
-    sc:featureList edam:operation_3435,
-        edam:operation_3436,
-        edam:operation_3552 ;
-    sc:name "MultiFRET" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31795419" .
-
 <https://bio.tools/MultiGuideScan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0654,
@@ -48891,7 +39371,7 @@ Förster resonance energy transfer (FRET) is increasingly used for non-invasive
     biotools:primaryContact "Jianxin Wang" .
 
 <https://bio.tools/MultiWaver> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3056,
@@ -48911,7 +39391,7 @@ Förster resonance energy transfer (FRET) is increasingly used for non-invasive
     biotools:primaryContact "Shuhua Xu" .
 
 <https://bio.tools/MultiXcan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3337,
@@ -48932,7 +39412,7 @@ Förster resonance energy transfer (FRET) is increasingly used for non-invasive
     sc:url "https://github.com/hakyimlab/MetaXcan" .
 
 <https://bio.tools/Multilayer_Extraction> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:citation "pmcid:PMC6927681",
         "pubmed:31871433" ;
@@ -48949,7 +39429,7 @@ multilayer.extraction(): identify densely connected vertex-layer communities wit
     sc:url "https://github.com/jdwilson4/MultilayerExtraction" .
 
 <https://bio.tools/MultimodalPrognosis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_2640,
@@ -48963,36 +39443,15 @@ multilayer.extraction(): identify densely connected vertex-layer communities wit
     sc:url "https://github.com/gevaertlab/MultimodalPrognosis" .
 
 <https://bio.tools/Multiple_Myeloma_survival_prediction> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "This is the dockerized environment for the winning algorithm in the 2017 Multiple Myeloma DREAM Challenge, Sub-Challenge 3." ;
     sc:license "GPL-3.0" ;
     sc:name "Multiple Myeloma survival prediction" ;
     sc:operatingSystem "Linux" ;
     sc:url "https://www.synapse.org/#!Synapse:syn11459638" .
 
-<https://bio.tools/Multiscale_Modelling_Tool> a sc:SoftwareApplication ;
-    sc:additionalType "Command-line tool" ;
-    sc:applicationSubCategory edam:topic_3070,
-        edam:topic_3315,
-        edam:topic_3318 ;
-    sc:citation <https://doi.org/10.1371/JOURNAL.PONE.0222906>,
-        "pmcid:PMC6768458",
-        "pubmed:31568526" ;
-    sc:description """Mathematical modelling of collective behaviour without the maths.
-
-Multiscale Modelling Tool - mathematical modelling without the maths.
-
-MuMoT: Multiscale Modelling Tool.
-
-MuMoT (Multiscale Modelling Tool) is a tool designed to allow sophisticated mathematical modelling and analysis, without writing equations - the class of models that can be represented is broad, ranging from chemical reaction kinetics to demography and collective behaviour - by using a web-based interactive interface with minimal coding, rapid development and exploration of models is facilitated - the tool may also be particularly useful for pedagogical demonstrations""" ;
-    sc:featureList edam:operation_2426,
-        edam:operation_3435 ;
-    sc:license "GPL-3.0" ;
-    sc:name "Multiscale Modelling Tool" ;
-    sc:url "http://github.com/DiODeProject/MuMoT/" .
-
 <https://bio.tools/Muscle2View> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3382 ;
@@ -49007,7 +39466,7 @@ Because manual immunohistochemical analysis of features such as skeletal muscle
     sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31697593" .
 
 <https://bio.tools/Muscle_Gene_Sets> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Ontology" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3308,
@@ -49029,7 +39488,7 @@ Because manual immunohistochemical analysis of features such as skeletal muscle
     biotools:primaryContact <https://orcid.org/0000-0003-2239-9094> .
 
 <https://bio.tools/MutEx> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0203,
@@ -49048,7 +39507,7 @@ Somatic mutation and gene expression dysregulation are considered two major tumo
     sc:url "http://www.innovebioinfo.com/Databases/Mutationdb_About.php" .
 
 <https://bio.tools/MutSig2CV> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0199,
@@ -49073,7 +39532,7 @@ Somatic mutation and gene expression dysregulation are considered two major tumo
     biotools:primaryContact "Michael S. Lawrence" .
 
 <https://bio.tools/MutSpot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_2640,
@@ -49087,14 +39546,12 @@ Somatic mutation and gene expression dysregulation are considered two major tumo
 
 <https://bio.tools/MutaFrame> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3021" ;
-            sc:name "UniProt accession" ;
-            sc:sameAs "http://edamontology.org/data_3021" ] ;
+            sc:additionalType "http://edamontology.org/data_3021" ;
+            sc:name "UniProt accession" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:name "Protein features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_3510 ;
     sc:citation <https://doi.org/10.1093/nar/gkx390> ;
@@ -49106,7 +39563,7 @@ Somatic mutation and gene expression dysregulation are considered two major tumo
     sc:url "https://mutaframe.com/" .
 
 <https://bio.tools/MutaNET> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0602,
@@ -49127,7 +39584,7 @@ Somatic mutation and gene expression dysregulation are considered two major tumo
     biotools:primaryContact "Volkhard Helms" .
 
 <https://bio.tools/MutateX> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0130,
         edam:topic_0199,
@@ -49150,7 +39607,7 @@ MutateX: an automated pipeline for in-silico saturation mutagenesis of protein s
     sc:url "https://github.com/ELELAB/mutatex" .
 
 <https://bio.tools/Mutplot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0736,
@@ -49172,7 +39629,7 @@ MutateX: an automated pipeline for in-silico saturation mutagenesis of protein s
     biotools:primaryContact <https://orcid.org/0000-0002-6123-8034> .
 
 <https://bio.tools/MySeq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0208,
         edam:topic_0605,
@@ -49199,19 +39656,8 @@ MySeq is a single-page web application for privacy-protecting personal genome an
     sc:name "MySeq" ;
     sc:url "https://go.middlebury.edu/myseq-demo" .
 
-<https://bio.tools/MySweetGestation> a sc:SoftwareApplication ;
-    sc:citation <https://doi.org/10.1016/J.DIABRES.2019.107896>,
-        "pubmed:31669627" ;
-    sc:description """A novel smartphone application for women with or at risk of diabetes during pregnancy.
-
-Mobile health (mHealth) applications (apps) have been recently introduced as an easily accessible tool for providing information to pregnant women with diabetes. Despite the growing number of apps on the topic "diabetes & pregnancy", a smartphone app offering comprehensive and individualized information to both women (before and during gestation) and their healthcare professionals was still missing. To overcome this lack, the Italian Diabetes and Pregnancy Study Group conceived and realized in 2016 a novel mobile app called "MySweetGestation". It is designed to be an interactive educational tool for both patients and physicians not expert in the field.
-
-||| HOMEPAGE MISSING!""" ;
-    sc:name "MySweetGestation" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31669627" .
-
 <https://bio.tools/MyelinJ> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3168,
         edam:topic_3304,
@@ -49232,7 +39678,7 @@ Mobile health (mHealth) applications (apps) have been recently introduced as an
     biotools:primaryContact "Susan Barnett" .
 
 <https://bio.tools/Mykrobe> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0625,
@@ -49258,7 +39704,7 @@ Before attempting to install with bioconda, please ensure you have your channels
     sc:url "https://github.com/mykrobe-tools/mykrobe" .
 
 <https://bio.tools/Myo-REG> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0621,
@@ -49283,27 +39729,8 @@ Myo-REG offers easy access to signaling information in the context of muscle reg
     sc:name "Myo-REG" ;
     sc:url "https://myoreg.uniroma2.it" .
 
-<https://bio.tools/N-GlyDE> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0121,
-        edam:topic_0601,
-        edam:topic_0736,
-        edam:topic_3474 ;
-    sc:citation <https://doi.org/10.1038/S41598-019-52341-Z>,
-        "pmcid:PMC6828726",
-        "pubmed:31685900" ;
-    sc:description """a two-stage N-linked glycosylation site prediction incorporating gapped dipeptides and pattern-based encoding.
-
-Sequence (in FASTA format, the length of each protein must be larger than 30).
-
-E-mail address : (optional: results could be returned via e-mail.)""" ;
-    sc:featureList edam:operation_0267,
-        edam:operation_0303,
-        edam:operation_0417 ;
-    sc:name "N-GlyDE" ;
-    sc:url "http://bioapp.iis.sinica.edu.tw/N-GlyDE/" .
-
 <https://bio.tools/N-GlycositeAtlas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3172,
@@ -49319,7 +39746,7 @@ E-mail address : (optional: results could be returned via e-mail.)""" ;
     sc:url "http://nglycositeatlas.biomarkercenter.org" .
 
 <https://bio.tools/N1PAS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3170,
@@ -49343,7 +39770,7 @@ E-mail address : (optional: results could be returned via e-mail.)""" ;
         "Yves A. Lussier" .
 
 <https://bio.tools/NACHO> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0632,
@@ -49358,23 +39785,8 @@ E-mail address : (optional: results could be returned via e-mail.)""" ;
     sc:name "NACHO" ;
     sc:url "https://github.com/mcanouil/NACHO" .
 
-<https://bio.tools/NAFLD> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0602,
-        edam:topic_0634,
-        edam:topic_0749 ;
-    sc:citation <https://doi.org/10.1055/A-0981-6484>,
-        "pubmed:31610584" ;
-    sc:description """A 2-step fast-track elastometry service for advanced workup of nonalcoholic fatty liver disease (NAFLD) patients.
-
-INTRODUCTION AND AIMS: Nonalcoholic fatty liver disease (NAFLD) is increasing globally with an estimated prevalence of approximately 25 %. Nonalcoholic steatohepatitis as the progressive disease entity often leads to fibrosis and end-stage disease. The magnitude of NAFLD patients are not diagnosed and have no access to further clinical assessment. Diagnostic pathways for individual risk evaluation fitting with available resources are of utmost importance in real-world clinical practice. METHODS: Retrospective analysis of 1346 anonymized outpatient datasets at Würzburg University Hospital, Germany. Transient elastography (TE) with controlled attenuation parameter and laboratory-based risk scores (NFS, FIB-4) were the main diagnostic workup tools for risk stratification.
-
-||| HOMEPAGE MISSING!""" ;
-    sc:featureList edam:operation_3283 ;
-    sc:name "NAFLD" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31610584" .
-
 <https://bio.tools/NAGbinder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0130,
@@ -49404,7 +39816,7 @@ Reference: Patiyal et. al. (2019) NAGbinder: An approach for identifying N-acety
     sc:url "https://webs.iiitd.edu.in/raghava/nagbinder/" .
 
 <https://bio.tools/NAMS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_0780 ;
@@ -49418,51 +39830,8 @@ Reference: Patiyal et. al. (2019) NAGbinder: An approach for identifying N-acety
     sc:operatingSystem "Linux" ;
     sc:url "http://sunlab.cpy.cuhk.edu.hk/NAMS/" .
 
-<https://bio.tools/NASA> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3077,
-        edam:topic_3489 ;
-    sc:citation <https://doi.org/10.7287/PEERJ.PREPRINTS.2139V5> ;
-    sc:description """virtual globe for an open smart city.
-
-In this article, firstly the open source framework NASA World Wind is introduced. NASA World Wind comes mainly with two versions. The Java version is well established in the market and has many customers. On the other hand the new version, which is the Web version, Web World Wind, is still at the dawn of development cycle, with many features implemented and already used in several applications, with a great future ahead. Following the introduction of NASA World Wind, the features available in the Web World Wind are listed and a short comparison with Cesium library is provided. Additionally, an application developed in the smart cities context with Web World Wind is described.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'Wind', 'NASA World Wind', 'World Wind', 'cities'""" ;
-    sc:name "NASA" ;
-    sc:url "https://doi.org/10.7287/PEERJ.PREPRINTS.2139V5" .
-
-<https://bio.tools/NASN> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3063,
-        edam:topic_3305,
-        edam:topic_3417,
-        edam:topic_3418 ;
-    sc:citation <https://doi.org/10.1177/1942602X19890470>,
-        "pubmed:31777312" ;
-    sc:description """12 Components of a Strong Vision Health System of Care.
-
-National Association of School Nurses.
-
-Skip to main content (Press Enter).
-
-Skip auxiliary navigation (Press Enter).
-
-The mission of the National Association of School Nurses is to optimize student health and learning by advancing the practice of school nursing.
-
-The National Center for Children’s Vision and Eye Health at Prevent Blindness has partnered with the NASN to provide national guidance for school nurses and others involved in front-line vision screening.
-
-Listen to this podcast from the NASN School Nurse and learn more by reading the related article.
-
-Adverse Community Environments and Adverse Childhood Experiences.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'Vision Health'""" ;
-    sc:featureList edam:operation_2422,
-        edam:operation_3096 ;
-    sc:name "NASN" ;
-    sc:url "https://www.nasn.org/nasn-resources/practice-topics/vision-health" .
-
 <https://bio.tools/NBDC_RDF_Portal> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_3068,
@@ -49482,7 +39851,7 @@ Adverse Community Environments and Adverse Childhood Experiences.
     sc:url "https://integbio.jp/rdf/" .
 
 <https://bio.tools/NBGLM-LBC> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3308,
@@ -49498,7 +39867,7 @@ Adverse Community Environments and Adverse Childhood Experiences.
     sc:url "https://shka.github.io/NBGLM-LBC" .
 
 <https://bio.tools/NCATS_BioPlanet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2840,
@@ -49520,63 +39889,14 @@ Adverse Community Environments and Adverse Childhood Experiences.
     sc:url "http://tripod.nih.gov/bioplanet/" ;
     biotools:primaryContact "Ruili Huang" .
 
-<https://bio.tools/NCBI-SRA> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0080,
-        edam:topic_0121,
-        edam:topic_0621,
-        edam:topic_0659,
-        edam:topic_3697 ;
-    sc:citation <https://doi.org/10.1016/J.DIB.2019.104451>,
-        "pmcid:PMC6811897",
-        "pubmed:31667223" ;
-    sc:description """Experimental data from flesh quality assessment and shelf life monitoring of high pressure processed European sea bass (Dicentrarchus labrax) fillets.
-
-Sequence Read Archive (SRA) makes biological sequence data available to the research community to enhance reproducibility and allow for new discoveries by comparing data sets.
-
-View results as an expanded interactive table using the RunSelector.
-
-Showing SRA Experiments for (projects.
-
-||| COMMON LINK WITH (PUB. & NAME DIFFERENT) bio.tools/ncbi_resources (NLM.NIH.GOV), bio.tools/sra (NLM.NIH.GOV/sra), bio.tools/genbank (NLM.NIH.GOV).
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'bass Dicentrarchus labrax fillets', 'HP-processed fillets', 'sea bass Dicentrarchus labrax fillets', 'Dicentrarchus labrax fillets'""" ;
-    sc:featureList edam:operation_3192,
-        edam:operation_3431,
-        edam:operation_3695,
-        edam:operation_3799 ;
-    sc:name "NCBI-SRA" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/sra/(projects" .
-
 <https://bio.tools/NCBI-protein> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "domain sequence-NES site" ;
     sc:name "NCBI-protein" ;
     sc:url "https://www.ncbi.nlm.nih.gov/protein" .
 
-<https://bio.tools/NCDs> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3305,
-        edam:topic_3390,
-        edam:topic_3399 ;
-    sc:citation <https://doi.org/10.12688/F1000RESEARCH.18423.1>,
-        "pmcid:PMC6685454",
-        "pubmed:31448099" ;
-    sc:description "> MEDIUM CONFIDENCE! | > HOMEPAGE MISSING! | Improved control of non-communicable diseases (NCDs) requires an additional advanced concept for public health | A major consequence of all elements of the 'epidemiological transition' is the rapid emergence of non-communicable diseases (NCDs) in low- and middle-income countries. In contrast to the outcomes of the 'Alma Ata Conference for Primary Health Care', it has not yet been possible to introduce an equally powerful health policy for the prevention and control of NCDs. Major strategies so far are to advise individuals not to smoke and drink alcohol in excess. Additionally, 'healthy' nutrition and increased physical activity are also advocated. Policy for preventing and working against NCDs is now part of the Sustainable Development Goals, specifically target 3.4. So far, attempts to soften the influence of NCDs on the health of the people in low- and middle-income countries have been unsuccessful" ;
-    sc:name "NCDs" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31448099" .
-
-<https://bio.tools/NCI-ALMANAC> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0154,
-        edam:topic_2258,
-        edam:topic_3474 ;
-    sc:citation <https://doi.org/10.3389/FCHEM.2019.00509>,
-        "pmcid:PMC6646421",
-        "pubmed:31380352" ;
-    sc:description "> MEDIUM CONFIDENCE! | Predicting Synergism of Cancer Drug Combinations Using NCI-ALMANAC Data | Created by Unknown User (zaharevd), last modified on Dec 22, 2017 | 2D structures - ComboCompoundSet.sdf | Chemical Names - Single Name file, file with all available names" ;
-    sc:name "NCI-ALMANAC" ;
-    sc:url "https://wiki.nci.nih.gov/display/NCIDTPdata/NCI-ALMANAC" .
-
 <https://bio.tools/NCPHLDA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0634,
@@ -49601,7 +39921,7 @@ To analyze these data on NCPHLDA to further infer potential associations between
     sc:url "https://github.com/bryanze/NCPHLDA" .
 
 <https://bio.tools/NCutYX> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0203,
@@ -49621,7 +39941,7 @@ Omics data come in different forms: gene expression, methylation, copy number, p
     sc:url "https://cran.r-project.org/web/packages/NCutYX/" .
 
 <https://bio.tools/NDD> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0602,
@@ -49636,44 +39956,8 @@ Omics data come in different forms: gene expression, methylation, copy number, p
     sc:name "NDD" ;
     sc:url "https://github.com/nrohani/NDD" .
 
-<https://bio.tools/NEEDS> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3399,
-        edam:topic_3419,
-        edam:topic_3855 ;
-    sc:citation <https://doi.org/10.1136/BMJOPEN-2019-030075>,
-        "pmcid:PMC6701679",
-        "pubmed:31401609" ;
-    sc:description "> LOW CONFIDENCE! | > CORRECT NAME OF TOOL COULD ALSO BE 'NEEDS study' | a protocol for a cross-sectional smartphone tracking study and a longitudinal population register study | Dynamic Urban Environmental Exposures on Depression and Suicide | Depression is among the leading health burdens worldwide and people affected by depression have a higher suicide risk. Environmental exposures may act as potential stressors or buffers to people’s mental health status. How much the environment (e.g. urban design, green space, social interaction) contributes to depression and suicide risk remains unclear and evidence tends to be limited to the residential environment. NEEDS calls such environmental exposure assessments into question" ;
-    sc:featureList edam:operation_3435,
-        edam:operation_3501 ;
-    sc:name "NEEDS" ;
-    sc:url "http://www.needs.sites.uu.nl" .
-
-<https://bio.tools/NEMII> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0602,
-        edam:topic_0634,
-        edam:topic_0659 ;
-    sc:citation <https://doi.org/10.1186/S12859-019-3063-3>,
-        "pmcid:PMC6740005",
-        "pubmed:31510919" ;
-    sc:description "A network embedding-based multiple information integration method for the MiRNA-disease association prediction | Code and data for “A network embedding-based multiple information integration method for the MiRNA-disease association prediction” | data/miRNA_disease.csv is the miRNA_disease association matrix, which contain 4479 associations between 412 miRNAs and 314 diseases | data/miRNA_family.csv is the miRNA_family association matrix, which contain 278 miRNA-family associations between 412 miRNAs and 278 families | NEMII_main.py implements 5-fold CV of NEMII on our dataset" ;
-    sc:featureList edam:operation_0463 ;
-    sc:name "NEMII" ;
-    sc:url "https://github.com/BioMedicalBigDataMiningLab/NEMII" .
-
-<https://bio.tools/NERChem> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3314 ;
-    sc:citation <https://doi.org/10.1093/DATABASE/BAW135>,
-        "pmcid:PMC5091336",
-        "pubmed:31414701" ;
-    sc:description "> HOMEPAGE BROKEN! | adapting NERBio to chemical patents via full-token features and named entity feature with chemical sub-class composition | Chemical patents contain detailed information on novel chemical compounds that is valuable to the chemical and pharmaceutical industries. In this paper, we introduce a system, NERChem that can recognize chemical named entity mentions in chemical patents. NERChem is based on the conditional random fields model (CRF). Our approach incorporates ( 1 ) class composition, which is used for combining chemical classes whose naming conventions are similar; ( 2 ) BioNE features, which are used for distinguishing chemical mentions from other biomedical NE mentions in the patents; and ( 3 ) full-token word features, which are used to resolve the tokenization granularity problem" ;
-    sc:featureList edam:operation_3280,
-        edam:operation_3502 ;
-    sc:name "NERChem" ;
-    sc:url "http://cu.edu.tw/nerchem" .
-
 <https://bio.tools/NERDSS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0153,
         edam:topic_0196,
@@ -49694,7 +39978,7 @@ Additional documentation through doxygen can be found within docs/ by opening in
     sc:url "https://github.com/mjohn218/NERDSS" .
 
 <https://bio.tools/NET-EXPO> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3305,
@@ -49710,7 +39994,7 @@ Additional documentation through doxygen can be found within docs/ by opening in
     sc:url "https://github.com/UTH-Tuan/NET-EXPO" .
 
 <https://bio.tools/NETGE-PLUS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0621,
@@ -49724,7 +40008,7 @@ Additional documentation through doxygen can be found within docs/ by opening in
     sc:url "http://net-ge2.biocomp.unibo.it" .
 
 <https://bio.tools/NETPAGE> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0602,
@@ -49739,7 +40023,7 @@ Additional documentation through doxygen can be found within docs/ by opening in
     sc:url "https://github.com/maffleur/NETPAGE.git" .
 
 <https://bio.tools/NExUS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2269,
@@ -49753,7 +40037,7 @@ Additional documentation through doxygen can be found within docs/ by opening in
     sc:url "https://github.com/priyamdas2/NExUS" .
 
 <https://bio.tools/NG-TAS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_2640,
@@ -49776,7 +40060,7 @@ Additional documentation through doxygen can be found within docs/ by opening in
     biotools:primaryContact "Carlos Caldas's la" .
 
 <https://bio.tools/NGL> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_3047,
@@ -49793,7 +40077,7 @@ NGL Viewer is a web application for molecular visualization. WebGL is employed t
     sc:url "https://github.com/vbchen/ngl" .
 
 <https://bio.tools/NGLY1> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0602,
@@ -49804,7 +40088,7 @@ NGL Viewer is a web application for molecular visualization. WebGL is employed t
     sc:url "http://ngly1graph.org/" .
 
 <https://bio.tools/NGLess> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3174 ;
     sc:citation <https://doi.org/10.1186/s40168-019-0684-8>,
@@ -49821,7 +40105,7 @@ NGL Viewer is a web application for molecular visualization. WebGL is employed t
     sc:url "https://ngless.embl.de" .
 
 <https://bio.tools/NGSEA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0625,
@@ -49842,7 +40126,7 @@ NGL Viewer is a web application for molecular visualization. WebGL is employed t
     biotools:primaryContact "Insuk Lee" .
 
 <https://bio.tools/NGSEP> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0625,
@@ -49865,7 +40149,7 @@ NGL Viewer is a web application for molecular visualization. WebGL is employed t
     biotools:primaryContact "Jorge Duitama" .
 
 <https://bio.tools/NGSL> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3474 ;
     sc:citation <https://doi.org/10.1109/TNNLS.2019.2944455>,
@@ -49883,7 +40167,7 @@ GSL.m : Core codes of GSL algorithm.""" ;
     sc:url "https://github.com/Fjr9516/GSL" .
 
 <https://bio.tools/NGSReadsTreatment> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3168,
@@ -49899,7 +40183,7 @@ GSL.m : Core codes of GSL algorithm.""" ;
     sc:url "https://sourceforge.net/projects/ngsreadstreatment/" .
 
 <https://bio.tools/NIPT> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0625,
@@ -49919,7 +40203,7 @@ The analysis pipeline can be run following instructions in the Python script pip
     sc:url "https://github.com/nh2tran/NIPT_WGS" .
 
 <https://bio.tools/NIPTeR> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3168,
@@ -49941,7 +40225,7 @@ The analysis pipeline can be run following instructions in the Python script pip
     biotools:primaryContact "Lennart Johansson" .
 
 <https://bio.tools/NITPicker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3678 ;
@@ -49963,7 +40247,7 @@ The analysis pipeline can be run following instructions in the Python script pip
     biotools:primaryContact "Daphne Ezer" .
 
 <https://bio.tools/NITUMID> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0203,
@@ -49983,23 +40267,8 @@ Non-negative Matrix Factorization-based Immune-TUmor MIcroenvironment Deconvolut
     sc:name "NITUMID" ;
     sc:url "https://github.com/tdw1221/NITUMID" .
 
-<https://bio.tools/NJ-SHO> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0102,
-        edam:topic_3418,
-        edam:topic_3489 ;
-    sc:citation <https://doi.org/10.1080/15389588.2019.1679552>,
-        "pubmed:31714800" ;
-    sc:description """Development of the New Jersey Safety and Health Outcomes (NJ-SHO) data warehouse.
-
-Objective: Our objective is to describe the development of the New Jersey Safety and Health Outcomes (NJ-SHO) data warehouse, a unique and comprehensive data source that integrates various state-level administrative databases in New Jersey to enable the field of traffic safety to address critical, high-priority research questions. Methods: We have obtained full identifiable data from the following statewide administrative databases for the state of New Jersey: (1) driver licensing database; (2) Administration Office of the Courts data on traffic-related citations; (3) police-reported crash database; (4) birth certificate data; (5) death certificate data; and (6) hospital discharge data as well as (7) childhood electronic records from New Jersey residents who were patients of the Children's Hospital of Philadelphia pediatric health care network and (8) census tract-level indicators.
-
-||| HOMEPAGE MISSING!""" ;
-    sc:featureList edam:operation_0283 ;
-    sc:name "NJ-SHO" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31714800" .
-
 <https://bio.tools/NJMerge> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0194,
@@ -50015,7 +40284,7 @@ Objective: Our objective is to describe the development of the New Jersey Safety
     sc:url "http://github.com/ekmolloy/njmerge" .
 
 <https://bio.tools/NLIMED> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0218,
@@ -50029,7 +40298,7 @@ Objective: Our objective is to describe the development of the New Jersey Safety
     sc:url "https://github.com/napakalas/NLIMED" .
 
 <https://bio.tools/NLP_ML> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0218,
         edam:topic_0634,
@@ -50046,23 +40315,8 @@ nlp_ml is a command line script that performs natural language processing and ma
     sc:name "NLP ML" ;
     sc:url "http://github.com/pySRURGS/nlp_ml" .
 
-<https://bio.tools/NLP_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0218,
-        edam:topic_3377,
-        edam:topic_3384 ;
-    sc:citation <https://doi.org/10.1093/OFID/OFZ360.1047>,
-        "pmcid:PMC6809219" ;
-    sc:description """1184. Making Pneumonia Surveillance Easy.
-
-AbstractBackgroundPneumonia (PNU) is the second most common nosocomial infection in the United States and is associated with substantial morbidity and mortality. While definitions from CDC were developed to increase the reliability of surveillance data, reduce the burden of surveillance in healthcare facilities, and enhance the utility of surveillance data for improving patient safety - the algorithm is still laborious. We propose an implementation of a refined algorithm script which combines two CDC definitions with the use of natural language processing (NLP), a tool which relies on pattern matching to determine whether a condition of interest is reported as present or absent in a report, to automate PNU surveillance.
-
-||| HOMEPAGE MISSING!""" ;
-    sc:featureList edam:operation_3503 ;
-    sc:name "NLP_autogenerated" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6809219/" .
-
 <https://bio.tools/NMA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0176,
@@ -50078,7 +40332,7 @@ AbstractBackgroundPneumonia (PNU) is the second most common nosocomial infection
     sc:url "http://apps.cbu.uib.no/webnma/home" .
 
 <https://bio.tools/NMF-RI> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3315,
         edam:topic_3360,
@@ -50097,7 +40351,7 @@ To use NMF-RI on new data (tissue or flow cytometry) we recommend to use the ´m
     sc:url "https://github.com/djimenezsanchez/Blind_Unmixing_NMF_RI/" .
 
 <https://bio.tools/NMR> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0593,
@@ -50113,7 +40367,7 @@ To use NMF-RI on new data (tissue or flow cytometry) we recommend to use the ´m
     sc:url "http://github.com/systemsnmr/ivtnmr" .
 
 <https://bio.tools/NMTF> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0625,
@@ -50125,20 +40379,8 @@ To use NMF-RI on new data (tissue or flow cytometry) we recommend to use the ´m
     sc:name "NMTF" ;
     sc:url "https://github.com/parks-cs-ccf/BayesianSNMTF" .
 
-<https://bio.tools/NNCI> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3068,
-        edam:topic_3304,
-        edam:topic_3419 ;
-    sc:citation <https://doi.org/10.1007/S40596-019-01119-6>,
-        "pubmed:31797322" ;
-    sc:description """Lessons from the National Neuroscience Curriculum Initiative.
-
-OBJECTIVE:Individual residency programs often struggle to keep pace with scientific advances and new training requirements. Integrating a modern neuroscience perspective into the clinical practice of psychiatry is particularly emblematic of these challenges. The National Neuroscience Curriculum Initiative (NNCI) was established in 2013 to develop a comprehensive set of shared, open-access resources for teaching neuroscience in psychiatry. METHODS:The NNCI developed a collaborative, team-based approach with a peer-review process for generating and reviewing content. Teaching resources have included interactive sessions for the classroom paired with a comprehensive facilitator's guide. Brief accessible reviews and short videos have been developed for self-study and teaching in clinical settings. Dissemination efforts have included hands-on training for educators through national workshops""" ;
-    sc:name "NNCI" ;
-    sc:url "http://www.NNCIonline.org" .
-
 <https://bio.tools/NNLDA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_0659,
@@ -50161,7 +40403,7 @@ The experimental data are downloaded from LncRNADiseas2.0 database""" ;
     sc:url "https://github.com/gao793583308/NNLDA" .
 
 <https://bio.tools/NOCAD> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3407,
@@ -50179,7 +40421,7 @@ Daniel Leitold, Anges Vathy-Fogarassy, and Janos abonyi, NOCAD - Network based O
     sc:url "https://github.com/abonyilab/NOCAD" .
 
 <https://bio.tools/NORINE> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_3071,
@@ -50196,10 +40438,10 @@ Daniel Leitold, Anges Vathy-Fogarassy, and Janos abonyi, NOCAD - Network based O
     sc:isAccessibleForFree true ;
     sc:license "CC-BY-NC-SA-4.0" ;
     sc:name "NORINE" ;
-    sc:url "https://bioinfo.cristal.univ-lille.fr/norine/" .
+    sc:url "http://norine.univ-lille.fr/norine/" .
 
 <https://bio.tools/NPA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2840,
@@ -50215,7 +40457,7 @@ Daniel Leitold, Anges Vathy-Fogarassy, and Janos abonyi, NOCAD - Network based O
     sc:url "https://github.com/philipmorrisintl/NPA" .
 
 <https://bio.tools/NPD> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3474 ;
@@ -50232,47 +40474,8 @@ By default, our algorithm reads in files X.csv and Y.csv, where the X and Y coor
     sc:name "NPD" ;
     sc:url "https://github.com/hz-zhu/NPD-micro-saccade-detection" .
 
-<https://bio.tools/NPDS> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0154,
-        edam:topic_2840,
-        edam:topic_3305,
-        edam:topic_3384,
-        edam:topic_3415 ;
-    sc:citation <https://doi.org/10.1080/15563650.2019.1677022>,
-        "pubmed:31752545" ;
-    sc:description """2018 Annual Report of the American Association of Poison Control Centers' National Poison Data System (NPDS).
-
-Introduction: This is the 36th Annual Report of the American Association of Poison Control Centers' (AAPCC) National Poison Data System (NPDS). As of 1 January, 2018, 55 of the nation's poison centers (PCs) uploaded case data automatically to NPDS. The upload interval was 7.72 [6.90, 12.0] (median [25%, 75%]) minutes, creating a near real-time national exposure and information database and surveillance system. Methods: We analyzed the case data tabulating specific indices from NPDS. The methodology was similar to that of previous years. Where changes were introduced, the differences are identified. Cases with medical outcomes of death were evaluated by a team of medical and clinical toxicologist reviewers using an ordinal scale of 1-6 to assess the Relative Contribution to Fatality (RCF) of the exposure.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'AAPCC'""" ;
-    sc:name "NPDS" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31752545" .
-
-<https://bio.tools/NPMA> a sc:SoftwareApplication ;
-    sc:citation <https://doi.org/10.1007/S10916-019-1444-9>,
-        "pubmed:31522286" ;
-    sc:description "> MEDIUM CONFIDENCE! | > HOMEPAGE MISSING! | A Novel Privacy-Preserving Mutual Authentication in TMIS for Mobile Edge-Cloud Architecture | Mobile Edge-Cloud Network is a new network structure after fog-cloud computing, where service and data computing are scattered in the most logical, nearby and efficient place. It provides better services than fog-cloud computing with better performance in reasonably low cost way and allows users to eliminate numerous limitations inherent in fog-cloud computing, although it inherits those security-privacy issues from fog-cloud computing. A novel privacy-preserving mutual authentication in TMIS for mobile Edge-Cloud architecture (abbreviated to NPMA) is constructed in this paper. NPMA scheme not only mitigates some weaknesses of fog-cloud computing, but has other advantages" ;
-    sc:name "NPMA" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31522286" .
-
-<https://bio.tools/NPS_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0121,
-        edam:topic_0154,
-        edam:topic_3172 ;
-    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTZ374>,
-        "pmcid:PMC6612854",
-        "pubmed:31510666" ;
-    sc:description "> NAME EQUAL TO (PUB. DIFFERENT) bio.tools/nps, bio.tools/nps-protein | > CORRECT NAME OF TOOL COULD ALSO BE 'IMPLEMENTATION:NPS' | scoring and evaluating the statistical significance of peptidic natural product-spectrum matches | NPS – Center for Algorithmic Biotechnology | NPS is an approach to scoring (NPScore) and evaluating the statistical significance (NPSignificance) of peptidic natural product-spectrum matches. It is embedded into Dereplicator and VarQuest pipelines" ;
-    sc:featureList edam:operation_3627,
-        edam:operation_3649,
-        edam:operation_3803 ;
-    sc:name "NPS_autogenerated" ;
-    sc:url "http://cab.spbu.ru/software/NPS" .
-
 <https://bio.tools/NRGXL> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0176,
@@ -50290,7 +40493,7 @@ NRGXL: a tool to compute protein crosslinker conformations and energies""" ;
     sc:url "https://nrgxl.pasteur.fr" .
 
 <https://bio.tools/NRL> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3169,
@@ -50312,7 +40515,7 @@ The NRLcalc app provides a visual interface for the bulk calculation of the Nucl
     sc:url "https://github.com/chrisclarkson/NRLcalc" .
 
 <https://bio.tools/NRStitcher> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0632,
         edam:topic_3382 ;
@@ -50329,19 +40532,8 @@ The NRLcalc app provides a visual interface for the bulk calculation of the Nucl
     sc:softwareHelp <https://github.com/arttumiettinen/pi2/blob/master/README.md> ;
     sc:url "https://github.com/arttumiettinen/pi2" .
 
-<https://bio.tools/NSF> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0610,
-        edam:topic_0621,
-        edam:topic_3304 ;
-    sc:citation <https://doi.org/10.1101/734798> ;
-    sc:description "> VERY_LOW CONFIDENCE! | > CORRECT NAME OF TOOL COULD ALSO BE 'neuroscience', 'discovery-driven', 'neuroethology', 'non-genetically' | The state of discovery-driven neuroscience research and experimental organism usage in the United States | BIO Proposal Processing Changes (nsf11078) | NSF's mission is to advance the progress of science, a mission accomplished by funding proposals for research and education made by scientists, engineers, and educators from across the country | National Science Foundation - Where Discoveries Begin | As you are no doubt aware, the proposal workload across the Foundation has increased dramatically over the past decade | The National Science Foundation: A Brief History | Dear Colleague Letter: BIO Proposal Processing Changes" ;
-    sc:featureList edam:operation_3431 ;
-    sc:name "NSF" ;
-    sc:softwareHelp <https://www.nsf.gov/about/history/nsf50/nsf8816.jsp> ;
-    sc:url "https://www.nsf.gov/publications/" .
-
 <https://bio.tools/NSimScan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0194,
@@ -50360,7 +40552,7 @@ The NRLcalc app provides a visual interface for the bulk calculation of the Nucl
     biotools:primaryContact "Denis Kaznadzey" .
 
 <https://bio.tools/NUFEB> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0176,
         edam:topic_3697,
@@ -50379,7 +40571,7 @@ The NRLcalc app provides a visual interface for the bulk calculation of the Nucl
     biotools:primaryContact "Paolo Zuliani" .
 
 <https://bio.tools/NUMT> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0654,
@@ -50401,7 +40593,7 @@ A pipeline including a collection of scripts used to analyse NUMTs discovered in
     sc:url "https://github.com/robbueck/arcnumt" .
 
 <https://bio.tools/NUQA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3168,
@@ -50415,28 +40607,8 @@ A pipeline including a collection of scripts used to analyse NUMTs discovered in
     sc:name "NUQA" ;
     sc:url "https://github.com/ACRoddy/NUQA" .
 
-<https://bio.tools/NYoSh> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0091,
-        edam:topic_3361,
-        edam:topic_3372 ;
-    sc:citation <https://doi.org/10.7287/PEERJ.PREPRINTS.112V2>,
-        "pmcid:PMC3898313",
-        "pubmed:24482760" ;
-    sc:description """Composable languages for bioinformatics.
-
-Tired of writing shell scripts with 30 years old technology? So were we. Welcome to NYoSh: Not Your ordinary Shell.
-
-NYoSh is designed as a modern replacement for Unix/Linux command line shells (BASH, TSCH, C shell, KSH, Bourne shell). NYoSh is built as a collection of languages implemented in the open-source Jetbrains MPS language workbench.
-
-||| COMMON LINK WITH (PUB. & NAME DIFFERENT) bio.tools/goby_framework (CAMPAGNELAB.ORG).
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'NYoSh Workbench'""" ;
-    sc:featureList edam:operation_1812 ;
-    sc:name "NYoSh" ;
-    sc:url "http://nyosh.campagnelab.org" .
-
 <https://bio.tools/NaPLeS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3172,
@@ -50452,13 +40624,13 @@ NYoSh is designed as a modern replacement for Unix/Linux command line shells (BA
     sc:url "http://naples.naturalproducts.net" .
 
 <https://bio.tools/NaS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "NaS is a hybrid approach developped to take advantage of data generated using MinION device. We combine Illumina and Oxford Nanopore technologies to produce NaS (Nanopore Synthetic-long) reads of up to 60 kb that aligned with no error to the reference genome and spanned repetitive regions." ;
     sc:name "NaS" ;
     sc:url "http://www.genoscope.cns.fr/nas/" .
 
 <https://bio.tools/NanoCaller> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_2885,
@@ -50477,7 +40649,7 @@ Abstract Background Variant detection from high-throughput sequencing data remai
     sc:url "https://github.com/WGLab/NanoCaller" .
 
 <https://bio.tools/NanoDJ> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3168,
@@ -50501,7 +40673,7 @@ Abstract Background Variant detection from high-throughput sequencing data remai
         "Marcos Colebrook" .
 
 <https://bio.tools/NanoDefiner> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3382,
@@ -50521,7 +40693,7 @@ This is the official repository for the NanoDefiner e-tool, a decision support f
     sc:url "https://fh.do/nanodefiner/" .
 
 <https://bio.tools/NanoMod> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3295,
@@ -50543,36 +40715,8 @@ This is the official repository for the NanoDefiner e-tool, a decision support f
     sc:url "https://github.com/WGLab/NanoMod" ;
     biotools:primaryContact "Wang Genomics Lab" .
 
-<https://bio.tools/NanoOK_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_2885,
-        edam:topic_3174,
-        edam:topic_3673,
-        edam:topic_3697,
-        edam:topic_3837 ;
-    sc:citation <https://doi.org/10.1038/S41564-019-0626-Z>,
-        "pubmed:31844297" ;
-    sc:description """Rapid MinION profiling of preterm microbiota and antimicrobial-resistant pathogens.
-
-Analysis tool for Nanopore sequencing data.
-
-Full documentation can be found at http://nanook.readthedocs.io/.
-
-Documentation at https://nanook.readthedocs.io/en/latest/reporter.html.
-
-||| NAME EQUAL TO (PUB. DIFFERENT) bio.tools/nanook.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'NanoOK RT', 'MinION', 'RT'""" ;
-    sc:featureList edam:operation_0310,
-        edam:operation_3185,
-        edam:operation_3196,
-        edam:operation_3200,
-        edam:operation_3482 ;
-    sc:license "GPL-3.0" ;
-    sc:name "NanoOK_autogenerated" ;
-    sc:url "https://github.com/richardmleggett/NanoOK" .
-
 <https://bio.tools/NanoPipe> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0199,
@@ -50595,7 +40739,7 @@ Documentation at https://nanook.readthedocs.io/en/latest/reporter.html.
     sc:url "https://nanopipe.readthedocs.io/en/latest/" .
 
 <https://bio.tools/NanoR> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3170 ;
     sc:citation <https://doi.org/10.1371/journal.pone.0216471>,
@@ -50615,7 +40759,7 @@ Documentation at https://nanook.readthedocs.io/en/latest/reporter.html.
     biotools:primaryContact "Davide Bolognini" .
 
 <https://bio.tools/NanoSatellite> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0157,
         edam:topic_0160,
@@ -50638,7 +40782,7 @@ Several tools exist to analyze tandem repeats (e.g. tandem-genotypes and RepeatH
     sc:url "https://github.com/arnederoeck/NanoSatellite" .
 
 <https://bio.tools/Nanocompore> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_0749,
@@ -50663,25 +40807,8 @@ Nanocompore compares 2 ONT nanopore direct RNA sequencing datasets from differen
     sc:name "Nanocompore" ;
     sc:url "https://github.com/tleonardi/nanocompore" .
 
-<https://bio.tools/National_Preparedness_Month> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3305,
-        edam:topic_3400,
-        edam:topic_3419 ;
-    sc:citation <https://doi.org/10.15585/MMWR.MM6835A1>,
-        "pmcid:PMC6730891",
-        "pubmed:31851647" ;
-    sc:description """National Preparedness Month.
-
-Center for Preparedness and Response.
-
-Centers for Disease Control and Prevention. CDC twenty four seven. Saving Lives, Protecting People.
-
-Every September, the Center for Preparedness and Response (CPR) along with its preparedness and response partners in government, private and public health, and academia come together to observe National Preparedness Month (NPM) and encourage year-round personal and community preparedness for disasters, disease outbreaks, and human-caused emergencies""" ;
-    sc:name "National Preparedness Month" ;
-    sc:url "https://www.cdc.gov/cpr/npm/npm2019.htm" .
-
 <https://bio.tools/Natural_Products_Atlas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0218,
@@ -50703,37 +40830,16 @@ The Natural Products Atlas provides a unique tools for exploring natural product
     sc:name "Natural Products Atlas" ;
     sc:url "http://www.npatlas.org" .
 
-<https://bio.tools/NavWell> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3361,
-        edam:topic_3500,
-        edam:topic_3679 ;
-    sc:citation <https://doi.org/10.3758/S13428-019-01310-5>,
-        "pubmed:31637666" ;
-    sc:description """A simplified virtual-reality platform for spatial navigation and memory experiments.
-
-Build and run your own virtual Morris Water Maze experiments in minutes.
-
-Immerse your participants with the Oculus Rift!.
-
-Analyse, compare and export results.
-
-NavWell provides an intuitive interface with which to configure and customise the virtual environment. Choose from various shapes and sizes and configure the internal cues all through a convenient web console""" ;
-    sc:featureList edam:operation_0337,
-        edam:operation_0387,
-        edam:operation_3435 ;
-    sc:name "NavWell" ;
-    sc:url "https://navwell.cs.nuim.ie/home" .
-
 <https://bio.tools/NaviKey> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2526" ;
-            sc:name "Text data" ;
-            sc:sameAs "http://edamontology.org/data_2526" ] ;
+            sc:additionalType "http://edamontology.org/data_2526" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Text data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2080" ;
-            sc:name "Database search results" ;
-            sc:sameAs "http://edamontology.org/data_2080" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2080" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Database search results" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Web application" ;
     sc:applicationSubCategory edam:topic_3070,
@@ -50757,7 +40863,7 @@ NavWell provides an intuitive interface with which to configure and customise th
     biotools:primaryContact "Universität Bayreuth, Department of Mycology" .
 
 <https://bio.tools/NeOGen> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_2885,
@@ -50776,7 +40882,7 @@ NavWell provides an intuitive interface with which to configure and customise th
     biotools:primaryContact "J. R. Ovenden" .
 
 <https://bio.tools/NeSSie> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0203 ;
@@ -50795,7 +40901,7 @@ NavWell provides an intuitive interface with which to configure and customise th
     biotools:primaryContact "Michele Berselli" .
 
 <https://bio.tools/NeoFuse> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2640,
@@ -50819,7 +40925,7 @@ Zlatko Trajanoski awarded with ERC Advanced Grant.""" ;
     sc:url "https://icbi.i-med.ac.at/NeoFuse/" .
 
 <https://bio.tools/NeoPeptide> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0804,
@@ -50841,7 +40947,7 @@ NeoPeptide is a catalog of epitopes derived from neoantigens, arising from somat
     sc:url "http://www.neopeptide.cn" .
 
 <https://bio.tools/NeoPredPipe> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_2640,
@@ -50858,32 +40964,8 @@ NeoPeptide is a catalog of epitopes derived from neoantigens, arising from somat
     sc:softwareHelp <https://github.com/MathOnco/NeoPredPipe/blob/master/README.md> ;
     sc:url "https://github.com/MathOnco/NeoPredPipe" .
 
-<https://bio.tools/Nero> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0625,
-        edam:topic_2885,
-        edam:topic_3050,
-        edam:topic_3175,
-        edam:topic_3179 ;
-    sc:citation <https://doi.org/10.3389/FGENE.2019.00982>,
-        "pmcid:PMC6828962",
-        "pubmed:31737031" ;
-    sc:description """Copy Number Variation Mapping and Genomic Variation of Autochthonous and Commercial Turkey Populations.
-
-Asini - Avicoli - Bovini - Cani - Cavalli - Cavie - Conigli - Gatti - Ovicaprini - Pesci - Polli - Suini - Fauna - Frutteti - Erbacee - Fiori - Alberi - Insetti - Estimo - Prodotti tipici - Funghi - Parchi.
-
-Si tratta di un tacchino la cui selezione è stata curata da un gruppo di allevatori lombardi che, operando una sorta di controselezione volta a ridurre la taglia degli animali, sono riusciti ad ottenere animali di piccola taglia.
-
-Origine, diffusione e caratteristiche economiche.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'pvclust', 'CNVRs', 'turkey', 'Ermellinato'""" ;
-    sc:featureList edam:operation_3196,
-        edam:operation_3432,
-        edam:operation_3891 ;
-    sc:name "Nero" ;
-    sc:url "http://www.agraria.org/tacchini/neroitalia.htm" .
-
 <https://bio.tools/NetDA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -50905,7 +40987,7 @@ Origine, diffusione e caratteristiche economiche.
     biotools:primaryContact "Minhyeok Lee" .
 
 <https://bio.tools/NetGO> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0602,
@@ -50930,7 +41012,7 @@ Origine, diffusione e caratteristiche economiche.
         "Shuwei Yao" .
 
 <https://bio.tools/NetML> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2640,
@@ -50952,39 +41034,8 @@ sample_OV.pkl: : Ovarian Cancer gene expression data set. The size of the data i
     sc:name "NetML" ;
     sc:url "https://github.com/compbiolabucf/NetML" .
 
-<https://bio.tools/NetworkAnalyst_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0203,
-        edam:topic_0602,
-        edam:topic_3170,
-        edam:topic_3360,
-        edam:topic_3512 ;
-    sc:citation <https://doi.org/10.3892/OL.2019.11044>,
-        "pmcid:PMC6876326",
-        "pubmed:31807166" ;
-    sc:description """Slow skeletal muscle troponin T, titin and myosin light chain 3 are candidate prognostic biomarkers for Ewing's sarcoma.
-
--- a visual analytics platform for comprehensive gene expression profiling & meta-analysis.
-
-Gene List InputGene Expression TableMultiple Gene Expression TablesRaw RNA-seq DataNetwork File.
-
-Starting from a list of gene IDs with optional expression values.
-
-Zhou, G., Soufan, O., Ewald, J., Hancock, REW, Basu, N. and Xia, J. (2019) "NetworkAnalyst 3.0: a visual analytics platform for comprehensive gene expression profiling and meta-analysis" Nucleic Acids Research (doi:10.1093/nar/gkz240).
-
-||| NAME EQUAL TO (PUB. DIFFERENT) bio.tools/networkanalyst.
-
-||| COMMON LINK WITH (PUB. & NAME DIFFERENT) bio.tools/networkanalys (NETWORKANALYST.CA), bio.tools/networkanalyst (NETWORKANALYST.CA).
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'GSEA' (bio.tools/gsea), 'DEGs', 'TTN', 'troponin'""" ;
-    sc:featureList edam:operation_0571,
-        edam:operation_2436,
-        edam:operation_3800,
-        edam:operation_3891 ;
-    sc:name "NetworkAnalyst_autogenerated" ;
-    sc:url "http://www.networkanalyst.ca" .
-
 <https://bio.tools/NeuRiPP> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0602,
@@ -50999,7 +41050,7 @@ Zhou, G., Soufan, O., Ewald, J., Hancock, REW, Basu, N. and Xia, J. (2019) "Netw
     sc:url "https://github.com/emzodls/neuripp" .
 
 <https://bio.tools/Neuro-Current_Response_Functions> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3304,
         edam:topic_3384,
@@ -51012,7 +41063,7 @@ Zhou, G., Soufan, O., Ewald, J., Hancock, REW, Basu, N. and Xia, J. (2019) "Netw
     sc:url "https://github.com/proloyd/neuro-currentRF" .
 
 <https://bio.tools/NeuroCS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3304,
@@ -51027,7 +41078,7 @@ BACKGROUND:Neuropeptides are a class of bioactive peptides produced from neurope
     sc:url "http://i.uestc.edu.cn/NeuroCS/dist/index.html#/" .
 
 <https://bio.tools/NeuroChaT> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3474,
@@ -51042,7 +41093,7 @@ MNI: Original conception and design of the software architecture, primary develo
     sc:url "https://github.com/shanemomara/NeuroChaT" .
 
 <https://bio.tools/NeuroMeasure> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3304,
         edam:topic_3384,
@@ -51063,7 +41114,7 @@ MNI: Original conception and design of the software architecture, primary develo
     sc:url "https://github.com/EdwardsLabNeuroSci/NeuroMeasure" .
 
 <https://bio.tools/NeuroPP> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0154,
@@ -51086,7 +41137,7 @@ MNI: Original conception and design of the software architecture, primary develo
     biotools:primaryContact "Prof. Jian Huang" .
 
 <https://bio.tools/NeuroPostureApp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3334,
@@ -51105,7 +41156,7 @@ WebApp to measure bending angle in camptocormia patients. Based on the article *
     sc:url "http://www.neuroimaging.uni-kiel.de/NeuroPostureApp/" .
 
 <https://bio.tools/NeuroPycon> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3304,
@@ -51128,7 +41179,7 @@ Neuropycon is an open-source multi-modal brain data analysis kit which provides
     sc:url "https://neuropycon.github.io/ephypype/index.html" .
 
 <https://bio.tools/NeuroServer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_3334 ;
     sc:description "Standard Electroencephalography (EEG) server that mediates between the raw EEG devices and all the various EEG applications that the user may wish to run to analyse the incoming EEG data." ;
@@ -51141,28 +41192,8 @@ Neuropycon is an open-source multi-modal brain data analysis kit which provides
     sc:url "http://openeeg.sourceforge.net/neuroserver_doku/" ;
     biotools:primaryContact "Rudi Cilibrasi" .
 
-<https://bio.tools/NeurodisM> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0199,
-        edam:topic_0625,
-        edam:topic_0634,
-        edam:topic_3295,
-        edam:topic_3304 ;
-    sc:citation <https://doi.org/10.3389/FGENE.2019.01202>,
-        "pmcid:PMC6895906",
-        "pubmed:31850066" ;
-    sc:description """Identifying Common Genes, Cell Types and Brain Regions Between Diseases of the Nervous System.
-
-Background: Diseases of the nervous system are widely considered to be caused by genetic mutations, and they have been shown to share pathogenic genes. Discovering the shared mechanisms of these diseases is useful for designing common treatments. Method: In this study, by reviewing 518 articles published after 2007 on 20 diseases of the nervous system, we compiled data on 1607 mutations occurring in 365 genes, totals that are 1.9 and 3.2 times larger than those collected in the Clinvar database, respectively. A combination with the Clinvar data gives 2434 pathogenic mutations and 424 genes. Using this information, we measured the genetic similarities between the diseases according to the number of genes causing two diseases simultaneously. Further detection was carried out on the similarity between diseases in terms of cell types.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'Clinvar', 'DMN'""" ;
-    sc:featureList edam:operation_2495,
-        edam:operation_3196,
-        edam:operation_3501 ;
-    sc:name "NeurodisM" ;
-    sc:url "http://biomed-ai.org/neurodism" .
-
 <https://bio.tools/NeuronSubtypeTranscriptomes> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3170,
@@ -51182,7 +41213,7 @@ Transcriptomics of cortical excitatory and inhibitory neurons""" ;
     sc:url "http://research-pub.gene.com/NeuronSubtypeTranscriptomes" .
 
 <https://bio.tools/Neutrosophic-Recommender-System> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -51198,7 +41229,7 @@ Transcriptomics of cortical excitatory and inhibitory neurons""" ;
     biotools:primaryContact "pham viet" .
 
 <https://bio.tools/New_Basis_Set_Exchange> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3068,
         edam:topic_3314,
@@ -51228,7 +41259,7 @@ A New Basis Set Exchange: An Open, Up-to-date Resource for the Molecular Science
     sc:url "https://www.basissetexchange.org" .
 
 <https://bio.tools/NexGenEx-Tom> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0780,
@@ -51252,7 +41283,7 @@ A New Basis Set Exchange: An Open, Up-to-date Resource for the Molecular Science
         "Maria Luisa Chiusano" .
 
 <https://bio.tools/NextPolish> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
@@ -51271,7 +41302,7 @@ NextPolish is used to fix base errors (SNV/Indel) in the genome generated by noi
     sc:url "https://github.com/Nextomics/NextPolish" .
 
 <https://bio.tools/Nglyc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0130,
         edam:topic_0621,
@@ -51288,7 +41319,7 @@ N-Glycosylation is one of the most important post-translational mechanisms in eu
     sc:url "https://github.com/bioinformaticsML/Ngly" .
 
 <https://bio.tools/NiceBot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3068,
         edam:topic_3361,
@@ -51305,18 +41336,18 @@ Data and code of the BrainLinks-BrainTools NiceBot project, manuscript "Human-Co
 
 <https://bio.tools/NicheNet> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3112" ;
-            sc:name "Gene expression matrix" ;
-            sc:sameAs "http://edamontology.org/data_3112" ] ;
+            sc:additionalType "http://edamontology.org/data_3112" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Gene expression matrix" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ],
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Pathway or network" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_2333" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3308 ;
@@ -51338,7 +41369,7 @@ Data and code of the BrainLinks-BrainTools NiceBot project, manuscript "Human-Co
     sc:url "https://github.com/saeyslab/nichenetr" .
 
 <https://bio.tools/NimbleMiner> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0218 ;
     sc:citation <https://doi.org/10.1097/CIN.0000000000000557>,
@@ -51349,7 +41380,7 @@ Data and code of the BrainLinks-BrainTools NiceBot project, manuscript "Human-Co
     sc:url "https://github.com/mtopaz/NimbleMiner" .
 
 <https://bio.tools/Nipah> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -51368,7 +41399,7 @@ Data and code of the BrainLinks-BrainTools NiceBot project, manuscript "Human-Co
     sc:url "http://cospi.iiserpune.ac.in/Nipah" .
 
 <https://bio.tools/NmrLineGuru> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0593,
@@ -51395,7 +41426,7 @@ Feng C, Kovrigin EL, Post CB (2019) NmrLineGuru: Standalone and User-Friendly GU
     sc:url "https://github.com/stonefonly/NmrLineGuru" .
 
 <https://bio.tools/Nomogram_Prognostic_Model> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_2640,
         edam:topic_3379 ;
@@ -51408,7 +41439,7 @@ Feng C, Kovrigin EL, Post CB (2019) NmrLineGuru: Standalone and User-Friendly GU
     sc:url "http://lce.biohpc.swmed.edu/lungcancer/nomogram" .
 
 <https://bio.tools/NordScreen> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2640 ;
     sc:citation <https://doi.org/10.1080/0284186X.2019.1615637>,
@@ -51423,27 +41454,8 @@ Feng C, Kovrigin EL, Post CB (2019) NmrLineGuru: Standalone and User-Friendly GU
     sc:url "https://nordscreen.org/" ;
     biotools:primaryContact "Veli-Matti Partanen" .
 
-<https://bio.tools/Norine_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0154,
-        edam:topic_0621,
-        edam:topic_3489,
-        edam:topic_3512 ;
-    sc:citation <https://doi.org/10.1093/NAR/GKZ1000>,
-        "pubmed:31691799" ;
-    sc:description """update of the nonribosomal peptide resource.
-
-NORINE is a platform that includes a database of nonribosomal peptides together with tools for their analysis. Norine currently contains 1730 peptides.
-
-Norine: update of the nonribosomal peptide resource. Areski Flissi, Emma Ricart, Cl�mentine Campart, Micka�l Chevalier, Yoann Dufresne, Juraj Michalik, Philippe Jacques, Christophe Flahaut, Fr�d�ric Lisacek, Val�rie Lecl�re and Maude Pupin.
-
-||| NAME (Norine) SIMILAR TO (PUB. DIFFERENT) bio.tools/NORINE (NORINE)""" ;
-    sc:featureList edam:operation_2428,
-        edam:operation_3646 ;
-    sc:name "Norine_autogenerated" ;
-    sc:url "https://bioinfo.cristal.univ-lille.fr/norine/" .
-
 <https://bio.tools/NormExpression> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3170,
@@ -51464,7 +41476,7 @@ Norine: update of the nonribosomal peptide resource. Areski Flissi, Emma Ricart,
     biotools:primaryContact "Shan Gao" .
 
 <https://bio.tools/Norovirus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3305,
@@ -51479,7 +41491,7 @@ Norine: update of the nonribosomal peptide resource. Areski Flissi, Emma Ricart,
     sc:url "https://www.rivm.nl/mpf/typingtool/norovirus/" .
 
 <https://bio.tools/Notch> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0749,
@@ -51501,7 +41513,7 @@ The simulation was built and tested on Unity version 4.6.1, which is freely avai
     sc:url "https://github.com/asafl/NotchDelta" .
 
 <https://bio.tools/Nucleome_Data_Bank> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0176,
         edam:topic_0621,
@@ -51523,7 +41535,7 @@ This platform enables users to visualize and annotate the 3D chromosome structur
     sc:url "https://ndb.rice.edu" .
 
 <https://bio.tools/Nucleosome_Dynamics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3125,
         edam:topic_3176,
@@ -51538,43 +41550,8 @@ This platform enables users to visualize and annotate the 3D chromosome structur
     sc:name "Nucleosome Dynamics" ;
     sc:url "http://mmb.irbbarcelona.org/NucleosomeDynamics/" .
 
-<https://bio.tools/Nuclide> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0602 ;
-    sc:citation <https://doi.org/10.1016/J.APRADISO.2019.108964>,
-        "pubmed:31706855" ;
-    sc:description """A C++ module to include DDEP recommended radioactive decay Data in Geant4.
-
-This article describes the Nuclide++ module developed at LNE-LNHB to simulate the decay schemes related to single or multiple radionuclides, by randomly selecting decay pathways. Written in C++, with respect of the Geant4 coding style, this module can be used transparently in Geant4-based simulation applications as an alternative to the existing Radioactive Decay Module (RDM). Nuclide++ takes advantage of the DDEP recommended data, accurate β-emitting spectra calculation and detailed description of the atomic rearrangement. This module can be useful in many applications, especially those involving radioactive sources. The reliability of the module was verified through comparisons with a while chosen radionuclides.
-
-||| HOMEPAGE MISSING!""" ;
-    sc:featureList edam:operation_3562 ;
-    sc:name "Nuclide++" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31706855" .
-
-<https://bio.tools/Nursing> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3063,
-        edam:topic_3376,
-        edam:topic_3403 ;
-    sc:citation <https://doi.org/10.1111/JAN.14298>,
-        "pubmed:31860933" ;
-    sc:description """The use and abuse of credentials.
-
-A Guide to Nursing Credentials and Degrees.
-
-Complete List of Common Nursing Certifications.
-
-From LPN to MSN, the jumble of letters following a nurse's name can be confusing. Learn what these nursing credentials mean and how they should be listed.
-
-View 183 commonly recognized nursing certifications along with links to their certifying organizations.
-
-The confusing nature of nursing credentials has led to widespread use of the term “alphabet soup.” The letters that follow a nurse’s name can be perplexing to professionals in the medical field, and especially to patients and families. To solve this problem, nursing credentials need to be displayed properly.
-
-Never fear. Nurse.org has compiled an alphabetical list of 183 different nursing certifications along with the appropriate acronyms and links to their certifying organizations""" ;
-    sc:name "Nursing" ;
-    sc:url "https://online.alvernia.edu/program-resources/nursing-credentials/" .
-
 <https://bio.tools/NutriGenomeDB> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -51597,7 +41574,7 @@ Nutrigenomics is defined as the science studying the role of nutrients and bioac
     sc:url "http://nutrigenomedb.org" .
 
 <https://bio.tools/OAB> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3474 ;
     sc:citation <https://doi.org/10.1097/AOG.0000000000003517>,
@@ -51612,7 +41589,7 @@ Number of Previously Failed Medications 0 ≥1.""" ;
     sc:url "https://oabweb.herokuapp.com/app/pre/" .
 
 <https://bio.tools/OAC> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0218,
         edam:topic_3063,
@@ -51633,7 +41610,7 @@ Detect prescription of oral anticoagulants (OAC) in clinical text using regular
     sc:url "https://github.com/CogStack/OAC-NLP" .
 
 <https://bio.tools/OAR> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0605,
         edam:topic_2828,
@@ -51653,7 +41630,7 @@ The oar-metadata package is a prerequisite which is configured as git sub-module
     sc:url "https://github.com/usnistgov/oar-pdr" .
 
 <https://bio.tools/OCMA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3316,
@@ -51676,30 +41653,8 @@ The oar-metadata package is a prerequisite which is configured as git sub-module
     biotools:primaryContact "Quan Long",
         "Zhi Xiong" .
 
-<https://bio.tools/OCR> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0203,
-        edam:topic_3474,
-        edam:topic_3855 ;
-    sc:citation <https://doi.org/10.20944/PREPRINTS201909.0062.V1> ;
-    sc:description "> VERY_LOW CONFIDENCE! | > CORRECT NAME OF TOOL COULD ALSO BE 'Nashi', 'digitisation', 'OCR-Aided', 'gitising' | Nasḫī – an Efficient Tool for the OCR-Aided Transcription of Printed Texts | Python-based tools for document analysis and OCR | OCRopus is a collection of document analysis programs, not a turn-key OCR system. In order to apply it to your documents, you may need to do some image preprocessing, and possibly also train new models" ;
-    sc:featureList edam:operation_3435,
-        edam:operation_3891 ;
-    sc:license "Apache-2.0" ;
-    sc:name "OCR" ;
-    sc:url "http://github.com/tmbdev/ocropy" .
-
-<https://bio.tools/OCR4all> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0218,
-        edam:topic_0769,
-        edam:topic_3382 ;
-    sc:citation <https://doi.org/10.20944/PREPRINTS201909.0101.V1> ;
-    sc:description "> COMMON LINK WITH (PUB. & NAME DIFFERENT) bio.tools/pymzml (GITHUB.COM) | An Open-Source Tool Providing a (Semi-)Automatic OCR Workflow for Historical Printings | Shell script for installing OCR4all in an 64bit ubuntu virtualBox image | Pretrained mixed models to be used in OCR4all | Zentrum für Philologie und Digitalität \"Kallimachos\" | OCR4all is a software designed to digitally explore primarily very early printed texts whose elaborate printing types and often uneven layout concepts are beyond the recognition abilities of most other recognition software. Understandably and independently to use, OCR4all’s suggested semi-automatic workflow also explicitly focusses users with no technical background and combines different tools in one consistent interface. A frequent change between software is not necessary anymore" ;
-    sc:license "MIT" ;
-    sc:name "OCR4all" ;
-    sc:url "https://www.uni-wuerzburg.de/en/zpd/ocr4all" .
-
 <https://bio.tools/OCSVM> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0634,
@@ -51718,7 +41673,7 @@ Disease causing gene identification is considered as an important step towards d
     sc:url "https://github.com/imandehzangi/OCSVM" .
 
 <https://bio.tools/OCTAD> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
@@ -51751,7 +41706,7 @@ Consolidated many data files into new files: CCLE_OCTAD.RData, metadata.RData"""
     sc:url "http://octad.org" .
 
 <https://bio.tools/OCTAVVS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0152,
@@ -51773,7 +41728,7 @@ OCTAVVS is a set of graphical tools for high-throughput preprocessing and analys
     sc:url "http://pypi.org/project/octavvs" .
 
 <https://bio.tools/OC_manager> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application",
         "Web application" ;
@@ -51792,7 +41747,7 @@ Shiny app to operate apparatus of office chromatography.""" ;
     sc:url "https://github.com/OfficeChromatography/OC_manager" .
 
 <https://bio.tools/ODAE> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Ontology" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0209,
@@ -51816,18 +41771,18 @@ Shiny app to operate apparatus of office chromatography.""" ;
 
 <https://bio.tools/ODAM> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3108" ;
-            sc:name "Experimental measurement" ;
-            sc:sameAs "http://edamontology.org/data_3108" ] ;
+            sc:additionalType "http://edamontology.org/data_3108" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Experimental measurement" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3108" ;
-            sc:name "Experimental measurement" ;
-            sc:sameAs "http://edamontology.org/data_3108" ],
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3604" ;
+            sc:name "Plot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3108" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Experimental measurement" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Web API",
         "Web application" ;
@@ -51855,26 +41810,8 @@ Shiny app to operate apparatus of office chromatography.""" ;
     sc:url "https://inrae.github.io/ODAM/" ;
     biotools:primaryContact <https://orcid.org/0000-0002-6687-7169> .
 
-<https://bio.tools/ODIAC> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0102,
-        edam:topic_0780,
-        edam:topic_3810 ;
-    sc:citation <https://doi.org/10.5194/ESSD-10-87-2018>,
-        "pmcid:PMC6818511",
-        "pubmed:31662803" ;
-    sc:description """A global, monthly fossil-fuel CO2 gridded emission data product for tracer transport simulations and surface flux inversions.
-
-Center for Global Environmental Research.
-
-The Open-Data Inventory for Anthropogenic Carbon dioxide (ODIAC) is a high-spatial resolution global emission data product of CO2 emissions from fossil fuel combustion (Oda and Maksyutov, 2011). In 2009, the first version of ODIAC was developed by Drs. Tomohiro Oda (now at USRA/NASA Goddard) and Shamil Maksyutov under the Greenhouse gases Observing SATellite (GOSAT) project at the National Institute for Environmental Studies (NIES) in Japan.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'ODIAC2016', 'ODIAC2017'""" ;
-    sc:featureList edam:operation_3436 ;
-    sc:name "ODIAC" ;
-    sc:url "http://db.cger.nies.go.jp/dataset/ODIAC/" .
-
 <https://bio.tools/ODNA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0219,
         edam:topic_0659,
@@ -51890,7 +41827,7 @@ Harbin Medical University, China""" ;
     sc:url "http://bio-bigdata.hrbmu.edu.cn/ODNA" .
 
 <https://bio.tools/OG> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0121,
@@ -51912,7 +41849,7 @@ Harbin Medical University, China""" ;
     biotools:primaryContact <https://orcid.org/0000-0001-7734-9102> .
 
 <https://bio.tools/OGRDB> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0804,
@@ -51926,7 +41863,7 @@ Harbin Medical University, China""" ;
     sc:url "https://ogrdb.airr-community.org" .
 
 <https://bio.tools/OHNOLOGS_v2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0102,
@@ -51951,29 +41888,8 @@ Singh PP & Isambert H. (2019) OHNOLOGS v2: A comprehensive resource for the gene
     sc:name "OHNOLOGS v2" ;
     sc:url "http://ohnologs.curie.fr" .
 
-<https://bio.tools/OLA-Simple> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0203,
-        edam:topic_0625,
-        edam:topic_3168,
-        edam:topic_3277 ;
-    sc:citation <https://doi.org/10.1016/J.EBIOM.2019.11.002>,
-        "pmcid:PMC6921160",
-        "pubmed:31767540" ;
-    sc:description """A software-guided HIV-1 drug resistance test for low-resource laboratories.
-
-BACKGROUND:HIV drug resistance (HIVDR) testing can assist clinicians in selecting treatments. However, high complexity and cost of genotyping assays limit routine testing in settings where HIVDR prevalence has reached high levels. METHODS:The oligonucleotide ligation assay (OLA)-Simple kit was developed for detection of HIVDR against first-line non-nucleoside nucleoside reverse transcriptase inhibitors and validated on 672 codons (168 specimens) from subtypes A, B, C, D, and AE. The kit uses dry reagents to facilitate assay setup, lateral flow devices for visual HIVDR detections, and in-house software with an interface for guiding users and analyzing results.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'HIVDR'""" ;
-    sc:featureList edam:operation_0308,
-        edam:operation_3196,
-        edam:operation_3482 ;
-    sc:name "OLA-Simple" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31767540" .
-
 <https://bio.tools/OLGenie> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0621,
@@ -51994,7 +41910,7 @@ OLGenie is a Perl program for estimating dN/dS to detect selection and function
     sc:url "https://github.com/chasewnelson/OLGenie" .
 
 <https://bio.tools/OLOGRAM> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0203,
@@ -52012,7 +41928,7 @@ MOTIVATION:Various bioinformatics analyses provide sets of genomic coordinates o
     sc:url "https://github.com/dputhier/pygtftk" .
 
 <https://bio.tools/OMBlast> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0749,
@@ -52033,51 +41949,8 @@ MOTIVATION:Various bioinformatics analyses provide sets of genomic coordinates o
     biotools:primaryContact "Kevin Y. Yip",
         "Ting-Fung Chan" .
 
-<https://bio.tools/OMERO_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0780,
-        edam:topic_3071,
-        edam:topic_3384,
-        edam:topic_3385,
-        edam:topic_3452 ;
-    sc:citation <https://doi.org/10.1101/2019.12.28.889295> ;
-    sc:description """Efficient data management infrastructure for the integration of imaging and omics data in life science research.
-
-Abstract As technical developments in omics and biomedical imaging drive the increase in quality, modality, and throughput of data generation in life sciences, the need for information systems capable of integrative, long-term storage and management of these heterogeneous digital assets is also increasing. Here, we propose an approach based on principles of Service Oriented Architecture design, to allow the integrated management and analysis of multi-omics and biomedical imaging data. The proposed architecture introduces an interoperable image management system, the OMERO server, into the backend of qPortal, a FAIR-compliant web-based platform for omics data management.
-
-||| HOMEPAGE BROKEN!.
-
-||| NAME EQUAL TO (PUB. DIFFERENT) bio.tools/omero.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'qPortal', 'FAIR-compliant', 'qPortal FAIR-compliant', 'omics'""" ;
-    sc:featureList edam:operation_0224,
-        edam:operation_3443,
-        edam:operation_3760 ;
-    sc:name "OMERO_autogenerated" ;
-    sc:url "http://OMERO.web" .
-
-<https://bio.tools/OMGS> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0102,
-        edam:topic_0196,
-        edam:topic_0621,
-        edam:topic_3318,
-        edam:topic_3673 ;
-    sc:citation <https://doi.org/10.1089/CMB.2019.0310>,
-        "pubmed:31794680" ;
-    sc:description """Optical Map-Based Genome Scaffolding.
-
-Due to the current limitations of sequencing technologies, de novo genome assembly is typically carried out in two stages, namely contig (sequence) assembly and scaffolding. While scaffolding is computationally easier than sequence assembly, the scaffolding problem can be challenging due to the high repetitive content of eukaryotic genomes, possible mis-joins in assembled contigs, and inaccuracies in the linkage information. Genome scaffolding tools either use paired-end mate-pair linked Hi-C reads or genome-wide maps (optical, physical, or genetic) as linkage information. Optical maps (in particular Bionano Genomics maps) have been extensively used in many recent large-scale genome assembly projects (e.g., goat, apple, barley, maize, quinoa, sea bass, among others).
-
-||| HOMEPAGE MISSING!""" ;
-    sc:featureList edam:operation_0282,
-        edam:operation_0523,
-        edam:operation_0524,
-        edam:operation_0525,
-        edam:operation_3216 ;
-    sc:name "OMGS" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31794680" .
-
 <https://bio.tools/OMH> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0196,
@@ -52092,7 +41965,7 @@ Due to the current limitations of sequencing technologies, de novo genome assemb
     sc:url "http://github.com/Kingsford-Group/omhismb2019" .
 
 <https://bio.tools/OMICfpp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_2640,
         edam:topic_3170 ;
@@ -52108,7 +41981,7 @@ Due to the current limitations of sequencing technologies, de novo genome assemb
     sc:url "http://www.uv.es/ayala/software/OMICfpp_0.2.tar.gz" .
 
 <https://bio.tools/OMSSA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -52118,7 +41991,7 @@ Due to the current limitations of sequencing technologies, de novo genome assemb
     sc:url "https://pubchem.ncbi.nlm.nih.gov/omssa/" .
 
 <https://bio.tools/OMeta> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0625,
@@ -52137,24 +42010,8 @@ Due to the current limitations of sequencing technologies, de novo genome assemb
     sc:url "https://github.com/JCVenterInstitute/OMeta-Public" ;
     biotools:primaryContact "J. Craig Venter Institute" .
 
-<https://bio.tools/ONDRI> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0634,
-        edam:topic_0769,
-        edam:topic_3304,
-        edam:topic_3384,
-        edam:topic_3444 ;
-    sc:citation <https://doi.org/10.1101/2019.12.13.875823> ;
-    sc:description """Ontario Neurodegenerative Disease Research Initiative (ONDRI).
-
-ABSTRACT The Ontario Neurodegenerative Research Initiative (ONDRI) is a 3 year multi-site prospective cohort study that has acquired comprehensive multiple assessment platform data, including 3T structural MRI, from neurodegenerative patients with Alzheimer’s disease, mild cognitive impairment, Parkinson’s disease, amyotrophic lateral sclerosis, frontotemporal dementia, and cerebrovascular disease patients. This heterogeneous cross-section of patients with complex neurodegenerative and neurovascular pathologies pose significant challenges for standard neuroimaging tools. To effectively quantify regional measures of normal and pathological brain tissue volumes, the ONDRI neuroimaging platform implemented a semi-automated MRI processing pipeline that was able to address many of the challenges resulting from this heterogeneity.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'Ontario Neurodegenerative Disease Research Initiative'""" ;
-    sc:featureList edam:operation_3435 ;
-    sc:name "ONDRI" ;
-    sc:url "http://ondri.ca/" .
-
 <https://bio.tools/OPA1> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3334,
@@ -52169,33 +42026,8 @@ ABSTRACT The Ontario Neurodegenerative Research Initiative (ONDRI) is a 3 year m
     sc:name "OPA1" ;
     sc:url "https://www.lovd.nl/OPA1" .
 
-<https://bio.tools/OPD> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3068,
-        edam:topic_3421,
-        edam:topic_3473 ;
-    sc:citation <https://doi.org/10.1089/TMJ.2019.0159>,
-        "pubmed:31674890" ;
-    sc:description """Data Mining of the Reviews from Online Private Doctors.
-
-Background: User-generated content shared in the online health communities (OHCs) is becoming a valuable resource for researchers to understand patients' decision-making behaviors in the management of their health. Many studies have focused on how to obtain useful information from online reviews in OHCs. Introduction: This study focuses on a telemedicine service called Online Private Doctor (OPD), which is offered by a leading Chinese physician review website (PRW). OPD reviews have not received much attention. By data mining the reviews, our goal is to determine what patients are talking about when they use the OPD service and whether they are satisfied with the service or not. Materials and Methods: We used a Python web crawler to collect 41,029 reviews and 84,510 short reviews (labels) of all 5,645 physicians who offered the OPD service on a PRW (haodf.com) in China.
-
-||| HOMEPAGE MISSING!""" ;
-    sc:featureList edam:operation_0306 ;
-    sc:name "OPD" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31674890" .
-
-<https://bio.tools/OPEN_SCIENCE_BADGES> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0611,
-        edam:topic_2229,
-        edam:topic_3324 ;
-    sc:citation <https://doi.org/10.1111/JNC.14856>,
-        "pubmed:31442299" ;
-    sc:description "> LOW CONFIDENCE! | > CORRECT NAME OF TOOL COULD ALSO BE 'UPR transmission', 'UPR', 'cell-to-cell UPR transmission', 'cell-to-cell UPR' | No evidence for cell-to-cell transmission of the unfolded protein response in cell culture | Criteria and background information about open science badges | Help support open science today. Donate Now" ;
-    sc:name "OPEN SCIENCE BADGES" ;
-    sc:url "https://cos.io/our-services/open-science-badges/" .
-
 <https://bio.tools/OPETH> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3304,
         edam:topic_3421,
@@ -52207,14 +42039,14 @@ Background: User-generated content shared in the online health communities (OHCs
 
 <https://bio.tools/OPRA> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ] ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein structure" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2042" ;
-            sc:name "Evidence" ;
-            sc:sameAs "http://edamontology.org/data_2042" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2042" ;
+            sc:encodingFormat "http://edamontology.org/format_3981" ;
+            sc:name "Evidence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128 ;
     sc:author <http://orcid.org/0000-0001-7786-2109>,
@@ -52233,7 +42065,7 @@ Background: User-generated content shared in the online health communities (OHCs
     sc:url "https://life.bsc.es/pid/opra" .
 
 <https://bio.tools/OPSCC> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3407,
@@ -52248,7 +42080,7 @@ BACKGROUND:The purpose of this study was to investigate if FDG uptake metrics in
     sc:url "https://rasmussen.shinyapps.io/OPSCCmodelFDG_PET/" .
 
 <https://bio.tools/OPTIMIR> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_3170,
@@ -52270,7 +42102,7 @@ BACKGROUND:The purpose of this study was to investigate if FDG uptake metrics in
     biotools:primaryContact "Florian Thibord" .
 
 <https://bio.tools/ORB-SLAM> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0749,
@@ -52289,44 +42121,8 @@ We develop an improved monocular visual SLAM system by using omnidirectional cam
     sc:name "ORB-SLAM" ;
     sc:url "https://github.com/lsyads/fisheye-ORB-SLAM" .
 
-<https://bio.tools/ORCA-SPOT> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0610,
-        edam:topic_3474,
-        edam:topic_3500 ;
-    sc:citation <https://doi.org/10.1038/S41598-019-47335-W>,
-        "pmcid:PMC6662697",
-        "pubmed:31358873" ;
-    sc:description "> MEDIUM CONFIDENCE! | > HOMEPAGE MISSING! | An Automatic Killer Whale Sound Detection Toolkit Using Deep Learning | Large bioacoustic archives of wild animals are an important source to identify reappearing communication patterns, which can then be related to recurring behavioral patterns to advance the current understanding of intra-specific communication of non-human animals. A main challenge remains that most large-scale bioacoustic archives contain only a small percentage of animal vocalizations and a large amount of environmental noise, which makes it extremely difficult to manually retrieve sufficient vocalizations for further analysis - particularly important for species with advanced social systems and complex vocalizations. In this study deep neural networks were trained on 11,509 killer whale (Orcinus orca) signals and 34,848 noise segments" ;
-    sc:name "ORCA-SPOT" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31358873" .
-
-<https://bio.tools/ORCAE-AOCC> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0621,
-        edam:topic_0622,
-        edam:topic_3390,
-        edam:topic_3512,
-        edam:topic_3810 ;
-    sc:citation <https://doi.org/10.3390/GENES10120950>,
-        "pubmed:31757073" ;
-    sc:description """A Centralized Portal for the Annotation of African Orphan Crop Genomes.
-Online Resource for Community Annotation of Eukaryotes.
-
-ORCAE is an online genome curation and browsing portal for several eukaryotic species.
-
-Community Annotation of Eukaryotes.
-
-ORCAE is an online genome annotation resource offering users the necessary tools and information to validate and correct gene annotations. The system is build on the wiki philosophy, all modifications to a certain gene are stored and can be found back in the annotation history of that gene. To be able to modify genes however you will need to have a user account. Anonymous users can browse the public genomes but don't have editing rights.
-
-Nutrition is at the core of AOCC.""" ;
-    sc:featureList edam:operation_0362,
-        edam:operation_2422,
-        edam:operation_3283 ;
-    sc:name "ORCAE-AOCC" ;
-    sc:url "https://bioinformatics.psb.ugent.be/orcae/" ;
-    biotools:primaryContact "Lieven Sterck" .
-
 <https://bio.tools/ORTHOSCOPE> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0102,
@@ -52350,7 +42146,7 @@ Nutrition is at the core of AOCC.""" ;
     biotools:primaryContact "Jun Inoue" .
 
 <https://bio.tools/OSCA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0632,
         edam:topic_3172,
@@ -52372,22 +42168,8 @@ Nutrition is at the core of AOCC.""" ;
     biotools:primaryContact "Futao Zhang",
         "Jian Yang" .
 
-<https://bio.tools/OSCE> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3393,
-        edam:topic_3403,
-        edam:topic_3422 ;
-    sc:citation <https://doi.org/10.1186/S13089-019-0118-7>,
-        <https://doi.org/10.2215/CJN.02900319>,
-        "pmcid:PMC6638613",
-        "pmcid:PMC6730513",
-        "pubmed:31359167",
-        "pubmed:31409597" ;
-    sc:description "> HOMEPAGE MISSING! | > CORRECT NAME OF TOOL COULD ALSO BE 'ultrasound', 'ultrasound OSCE', 'POCUS', 'emergency' | Fellow Performance on a Formative Assessment of Acute Kidney Replacement Therapy Competence | Correlation of OSCE performance and point-of-care ultrasound scan numbers among a cohort of emergency medicine residents | BACKGROUND AND OBJECTIVES:Acute kidney replacement therapy (KRT) prescription is a critical nephrology skill. We administered a formative objective structured clinical examination (OSCE) to nephrology fellows to assess acute KRT medical knowledge, patient care, and systems-based practice competencies. DESIGN, SETTING, PARTICIPANTS, & MEASUREMENTS:Prospective cohort study of an educational test using the unified model of construct validity. We tested 117 fellows: 25 (four programs) in 2016 and 92 (15 programs) in 2017; 51 first-year and 66 second-year fellows" ;
-    sc:name "OSCE" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31409597" .
-
 <https://bio.tools/OSTRFPD> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0157,
@@ -52411,7 +42193,7 @@ Nutrition is at the core of AOCC.""" ;
     biotools:primaryContact "Mallika Imwong" .
 
 <https://bio.tools/OSacc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0203,
@@ -52430,7 +42212,7 @@ Gene expression profiling data with long-term clinical follow-up information are
     sc:url "http://bioinfo.henu.edu.cn/ACC/ACCList.jsp" .
 
 <https://bio.tools/OScc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3360 ;
@@ -52440,19 +42222,8 @@ Gene expression profiling data with long-term clinical follow-up information are
     sc:name "OScc" ;
     sc:url "http://bioinfo.henu.edu.cn/CESC/CESCList.jsp" .
 
-<https://bio.tools/OSkirc> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_2640,
-        edam:topic_3360,
-        edam:topic_3512 ;
-    sc:citation <https://doi.org/10.2217/FON-2019-0296>,
-        "pubmed:31368353" ;
-    sc:description "> HOMEPAGE MISSING! | > CORRECT NAME OF TOOL COULD ALSO BE 'KIRC' | a web tool for identifying prognostic biomarkers in kidney renal clear cell carcinoma | Aim: To develop a free and quick analysis online tool that allows users to easily investigate the prognostic potencies of interesting genes in kidney renal clear cell carcinoma (KIRC). Patients & methods: A total of 629 KIRC cases with gene expression profiling data and clinical follow-up information are collected from public Gene Expression Omnibus and The Cancer Genome Atlas databases. Results: One web application called Online consensus Survival analysis for KIRC (OSkirc) that can be used for exploring the prognostic implications of interesting genes in KIRC was constructed. By OSkirc, users could simply input the gene symbol to receive the Kaplan-Meier survival plot with hazard ratio and log-rank p-value" ;
-    sc:featureList edam:operation_2495 ;
-    sc:name "OSkirc" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31368353" .
-
 <https://bio.tools/OSuvm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3360,
@@ -52467,23 +42238,8 @@ Uveal melanoma (UM) is a rare, aggressive, but the most frequent primary intraoc
     sc:name "OSuvm" ;
     sc:url "http://bioinfo.henu.edu.cn/UVM/UVMList.jsp" .
 
-<https://bio.tools/OTP-PRL> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0749,
-        edam:topic_3303,
-        edam:topic_3489 ;
-    sc:citation <https://doi.org/10.1186/S12889-019-7935-2>,
-        "pmcid:PMC6873564",
-        "pubmed:31752804" ;
-    sc:description """an app for occupational risk prevention in policing activities.
-
-APLICACIÓN OTP-PRL – formacionOTP.
-
-Utilizamos cookies propias y de terceros para mejorar la experiencia de navegación, y ofrecer contenidos y publicidad de interés. Al continuar con la navegación entendemos que se acepta nuestra Política de cookies.""" ;
-    sc:name "OTP-PRL" ;
-    sc:url "https://operativatacticapolicial.org/app-otp-prl" .
-
 <https://bio.tools/OVERFRAG> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3292,
@@ -52497,26 +42253,21 @@ Utilizamos cookies propias y de terceros para mejorar la experiencia de navegaci
 
 <https://bio.tools/OakMine> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2353" ;
-            sc:name "Ontology data" ;
-            sc:sameAs "http://edamontology.org/data_2353" ],
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:name "Sequence features" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ] ;
+            sc:additionalType "http://edamontology.org/data_2353" ;
+            sc:name "Ontology data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ],
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:name "Sequence features" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3753" ;
-            sc:name "Over-representation data" ;
-            sc:sameAs "http://edamontology.org/data_3753" ],
+            sc:additionalType "http://edamontology.org/data_3753" ;
+            sc:name "Over-representation data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3786" ;
-            sc:name "Query script" ;
-            sc:sameAs "http://edamontology.org/data_3786" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3786" ;
+            sc:name "Query script" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application",
         "Web service" ;
@@ -52541,110 +42292,58 @@ Utilizamos cookies propias y de terceros para mejorar la experiencia de navegaci
 
 <https://bio.tools/Ocean_Gene_Atlas> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1138" ;
-            sc:name "Pfam accession number" ;
-            sc:sameAs "http://edamontology.org/data_1138" ],
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-            sc:name "Hidden Markov model" ;
-            sc:sameAs "http://edamontology.org/data_1364" ],
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         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ],
+            sc:additionalType "http://edamontology.org/data_1364" ;
+            sc:encodingFormat "http://edamontology.org/format_1370" ;
+            sc:name "Hidden Markov model" ],
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-            sc:identifier "http://edamontology.org/data_2295" ;
-            sc:name "Gene ID" ;
-            sc:sameAs "http://edamontology.org/data_2295" ],
+            sc:additionalType "http://edamontology.org/data_2295" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Gene ID" ],
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+            sc:additionalType "http://edamontology.org/data_2977" ;
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-            sc:identifier "http://edamontology.org/data_2295" ;
-            sc:name "Gene ID" ;
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+            sc:additionalType "http://edamontology.org/data_1138" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Pfam accession number" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3736" ;
-            sc:name "Ecological data" ;
-            sc:sameAs "http://edamontology.org/data_3736" ],
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-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
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-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ],
+            sc:additionalType "http://edamontology.org/data_2884" ;
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-            sc:name "Protein sequence" ;
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+            sc:additionalType "http://edamontology.org/data_2976" ;
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-            sc:name "Image" ;
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+            sc:additionalType "http://edamontology.org/data_2977" ;
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+            sc:name "Nucleic acid sequence" ],
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-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ],
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-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ],
+            sc:additionalType "http://edamontology.org/data_2968" ;
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-            sc:identifier "http://edamontology.org/data_0857" ;
-            sc:name "Sequence search results" ;
-            sc:sameAs "http://edamontology.org/data_0857" ],
+            sc:additionalType "http://edamontology.org/data_0872" ;
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+            sc:name "Phylogenetic tree" ],
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-        [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ],
-        [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0872" ;
-            sc:name "Phylogenetic tree" ;
-            sc:sameAs "http://edamontology.org/data_0872" ],
-        [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ],
-        [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ],
-        [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3736" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Ecological data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_3174,
@@ -52669,7 +42368,7 @@ User queries are composed of either a sequence (nucleic or protein), or a hidden
     sc:url "http://tara-oceans.mio.osupytheas.fr/ocean-gene-atlas/" .
 
 <https://bio.tools/OdoBD> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_3068,
@@ -52685,7 +42384,7 @@ The current project, supported by Rufford Small Grant, is designed to assemble a
     sc:url "http://www.odobd.org" .
 
 <https://bio.tools/Odonate_Phenotypic_Database> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_0625,
@@ -52708,7 +42407,7 @@ Complete Database Variable Definitions""" ;
     sc:url "http://www.odonatephenotypicdatabase.org/" .
 
 <https://bio.tools/Oligogenic_resource_for_variant_analysis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0622,
@@ -52734,7 +42433,7 @@ Complete Database Variable Definitions""" ;
     biotools:primaryContact <https://orcid.org/0000-0003-3645-1455> .
 
 <https://bio.tools/OliveR> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2885,
@@ -52751,7 +42450,7 @@ Complete Database Variable Definitions""" ;
     sc:url "https://github.com/nicocriscuolo/OliveR" .
 
 <https://bio.tools/Omic-Sig> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0601,
@@ -52764,7 +42463,7 @@ Complete Database Variable Definitions""" ;
     sc:url "https://github.com/hzhangjhu/Omic-Sig" .
 
 <https://bio.tools/OmicShare> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0659,
@@ -52788,7 +42487,7 @@ OmicShare Tools为完全免费开放生物信息云工具网站。OmicShare Tool
     sc:url "http://www.omicshare.com/tools" .
 
 <https://bio.tools/OmicsARules> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0203,
@@ -52810,7 +42509,7 @@ OmicsARules is a tool for the analysis of multi-omics high-throughput data based
     sc:url "https://github.com/BioinformaticsSTU/OmicsARules" .
 
 <https://bio.tools/OmicsOne> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0625,
@@ -52825,7 +42524,7 @@ OmicsARules is a tool for the analysis of multi-omics high-throughput data based
     sc:url "https://github.com/huizhanglab-jhu/OmicsOne" .
 
 <https://bio.tools/OmicsX> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3172,
@@ -52838,7 +42537,7 @@ OmicsARules is a tool for the analysis of multi-omics high-throughput data based
     sc:url "http://bioinfo.wilmer.jhu.edu/OmicsX/" .
 
 <https://bio.tools/OmniPath> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API" ;
     sc:applicationSubCategory edam:topic_0128 ;
     sc:citation <https://doi.org/10.1038/nmeth.4077> ;
@@ -52852,7 +42551,7 @@ OmicsARules is a tool for the analysis of multi-omics high-throughput data based
     sc:url "http://omnipathdb.org/" .
 
 <https://bio.tools/OnClass> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_2229,
@@ -52870,7 +42569,7 @@ please see the document of OnClass at https://onclass.readthedocs.io/en/latest/"
     sc:url "https://onclass.readthedocs.io/en/latest/" .
 
 <https://bio.tools/OnTAD> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0621,
@@ -52894,7 +42593,7 @@ OnTAD <Hi-C matrix> [-penalty <float>] [-maxsz <int>] [-minsz <int>] [-ldiff <fl
     sc:url "https://github.com/anlin00007/OnTAD" .
 
 <https://bio.tools/OncoLnc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -52916,7 +42615,7 @@ A pan-cancer analysis using data in OncoLnc: OncoRank.""" ;
     sc:url "http://www.oncolnc.org/" .
 
 <https://bio.tools/OncoPPi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0121,
@@ -52937,30 +42636,8 @@ This site provides a platform to facilitate discovery of new mechanisms to contr
     sc:name "OncoPPi" ;
     sc:url "http://oncoppi.emory.edu" .
 
-<https://bio.tools/OncoSim_OncoWiki> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0121,
-        edam:topic_2640,
-        edam:topic_3421,
-        edam:topic_3474,
-        edam:topic_3577 ;
-    sc:citation <https://doi.org/10.1186/S12909-019-1812-7>,
-        "pmcid:PMC6836658",
-        "pubmed:31699073" ;
-    sc:description """an authentic learning approach to teaching cancer genomics.
-
-On this site you can both (a) make and upload, and (b) download and analyse simulated patient case studies.
-
-||| COMMON LINK WITH (PUB. & NAME DIFFERENT) bio.tools/chooch (CO.UK), bio.tools/dgw (CO.UK), bio.tools/dna_for_windows (CO.UK), bio.tools/translatorx (CO.UK), bio.tools/polygenicpathways (CO.UK).
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'OncoSim'""" ;
-    sc:featureList edam:operation_3216,
-        edam:operation_3283,
-        edam:operation_3907 ;
-    sc:name "OncoSim OncoWiki" ;
-    sc:url "https://www.oncowiki.co.uk" .
-
 <https://bio.tools/OncoWiki> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_2640,
@@ -52980,7 +42657,7 @@ On this site you can both (a) make and upload, and (b) download and analyse simu
     sc:url "https://www.oncowiki.co.uk" .
 
 <https://bio.tools/OncodriveCLUSTL> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2640 ;
     sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTZ588>,
@@ -52990,35 +42667,8 @@ On this site you can both (a) make and upload, and (b) download and analyse simu
     sc:name "OncodriveCLUSTL" ;
     sc:url "https://bitbucket.org/bbglab/oncodriveclustl/src/master/" .
 
-<https://bio.tools/Oncomine> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0602,
-        edam:topic_0659,
-        edam:topic_3518 ;
-    sc:citation <https://doi.org/10.3892/ETM.2019.7870>,
-        "pmcid:PMC6755433",
-        "pubmed:31555364" ;
-    sc:description "> VERY_LOW CONFIDENCE! | > CORRECT NAME OF TOOL COULD ALSO BE 'GEO', 'DEMs', 'DEGs', 'Wilms' | Identification of key genes and microRNAs involved in kidney Wilms tumor by integrated bioinformatics analysis | With Oncomine ™ Research Premium Edition, you can: | Design better experiments... Answer more questions with fewer experiments, select the most promising gene or cell line, and test your hypothesis | The Oncomine ™ Platform from web applications to translational bioinformatics services provides solutions for individual researchers and multinational companies, with robust, peer-reviewed analysis methods and a powerful set of analysis functions that compute gene expression signatures, clusters and gene-set modules, automatically extracting biological insights from the data" ;
-    sc:featureList edam:operation_0463,
-        edam:operation_3223,
-        edam:operation_3792 ;
-    sc:name "Oncomine" ;
-    sc:url "https://www.oncomine.org" .
-
-<https://bio.tools/OnoMaP> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0605,
-        edam:topic_0621,
-        edam:topic_3855 ;
-    sc:citation <https://doi.org/10.7287/PEERJ.PREPRINTS.2273V2> ;
-    sc:description """a Spatial Data Infrastructure dedicated to noise monitoring based on volunteers measurements.
-
-The present paper proposes an ideal Spatial Data Infrastructure (SDI) dedicated to noise monitoring based on volunteers measurements. Called OnoM@P, it takes advantage of the geospatial standards and open source tools to build an integrated platform to manage the whole knowledge about a territory and to observe its dynamics. It intends also to diffuse good practices to organize, collect, represent and process geospatial data in field of acoustic researches. OnoM@p falls within the framework of the Environmental Noise Directive (END) 2002 49 CE. The system relies on the NoiseCapture Android application developed for allowing each citizen to estimate its own noise exposure with its smartphone.
-
-||| HOMEPAGE MISSING!""" ;
-    sc:name "OnoMaP" ;
-    sc:url "https://doi.org/10.7287/PEERJ.PREPRINTS.2273V2" .
-
 <https://bio.tools/OntoKin> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0154,
@@ -53036,38 +42686,8 @@ A knowledge-graph built with the integration of semantic technologies and softwa
     sc:name "OntoKin" ;
     sc:url "http://www.theworldavatar.com/kb/ontokin/ontokin.owl" .
 
-<https://bio.tools/Open> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0102,
-        edam:topic_3303,
-        edam:topic_3571 ;
-    sc:citation <https://doi.org/10.7287/PEERJ.PREPRINTS.27127V2> ;
-    sc:description """A brief introduction to Open Data, Open Source Software and Collective Intelligence for environmental data creators and users.
-
-Defining Open in Open Data, Open Content and Open Knowledge.
-
-By Joshua Tauberer. Second Edition: 2014.
-
-OpenStreetMap is the free wiki world map.
-
-The principles, practices, and a history of the open government data movement.
-
-Open government data has changed the way we understand civics.
-
-OpenStreetMap is built by a community of mappers that contribute and maintain data about roads, trails, cafés, railway stations, and much more, all over the world.
-
-Jobs at OpenGeoHub / EnvirometriX.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'Crowdsourcing'""" ;
-    sc:featureList edam:operation_0337,
-        edam:operation_3096,
-        edam:operation_3436 ;
-    sc:name "Open" ;
-    sc:softwareHelp <https://opendefinition.org/licenses/>,
-        <https://www.openstreetmap.org/about> ;
-    sc:url "http://OpenGeoHub.org" .
-
 <https://bio.tools/Open-Sim_Moco> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3500 ;
     sc:citation <https://doi.org/10.1101/839381> ;
@@ -53081,7 +42701,7 @@ OpenSim Moco is a software toolkit to solve optimal control problems with muscul
     sc:url "https://simtk.org/projects/opensim-moco" .
 
 <https://bio.tools/Open-community_Profiling_Assessment_tooL> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3174,
         edam:topic_3697,
@@ -53103,7 +42723,7 @@ OpenSim Moco is a software toolkit to solve optimal control problems with muscul
     sc:url "https://github.com/CAMI-challenge/OPAL" .
 
 <https://bio.tools/OpenCASA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3382 ;
     sc:citation <https://doi.org/10.1371/journal.pcbi.1006691>,
@@ -53122,7 +42742,7 @@ OpenSim Moco is a software toolkit to solve optimal control problems with muscul
     sc:url "https://github.com/calquezar/OpenCASA" .
 
 <https://bio.tools/OpenCRAVAT> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0199,
@@ -53150,27 +42770,8 @@ Get started with OpenCRAVAT here or with `pip install open-cravat`.""" ;
     sc:name "OpenCRAVAT" ;
     sc:url "https://opencravat.org" .
 
-<https://bio.tools/OpenCRG> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0102,
-        edam:topic_3316,
-        edam:topic_3382 ;
-    sc:citation <https://doi.org/10.3390/S19245373>,
-        "pubmed:31817491" ;
-    sc:description """High-Resolution Representation for Mobile Mapping Data in Curved Regular Grid Model.
-
-Welcome to the World of OpenCRG®!.
-
-The OpenCRG® initiative was launched in October 2008. Its objective is the provision of a series of open file formats and open source tools for the detailed description, creation and evaluation of road surfaces. It is suitable for a broad range of applications including e.g. tyre and driving simulations.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'road', 'road surface', 'elevation'""" ;
-    sc:featureList edam:operation_0337,
-        edam:operation_2429,
-        edam:operation_3891 ;
-    sc:name "OpenCRG" ;
-    sc:url "http://www.opencrg.org/" .
-
 <https://bio.tools/OpenFlexure> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0634,
@@ -53185,7 +42786,7 @@ The OpenFlexure project, which aims to make high precision mechanical positionin
     sc:url "https://gitlab.com/openflexure/" .
 
 <https://bio.tools/OpenFmriAnalysis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3077,
         edam:topic_3384,
@@ -53208,36 +42809,8 @@ From this project root, run tvm_installLaminarAnalysisToolbox.m in MATLAB.""" ;
     sc:name "OpenFmriAnalysis" ;
     sc:url "https://github.com/TimVanMourik/OpenFmriAnalysis" .
 
-<https://bio.tools/OpenMolcas> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0176,
-        edam:topic_0593,
-        edam:topic_3332 ;
-    sc:citation <https://doi.org/10.1021/ACS.JCTC.9B00532>,
-        "pubmed:31509407" ;
-    sc:description "> MEDIUM CONFIDENCE! | > HOMEPAGE MISSING! | From Source Code to Insight | In this Article we describe the OpenMolcas environment and invite the computational chemistry community to collaborate. The open-source project already includes a large number of new developments realized during the transition from the commercial MOLCAS product to the open-source platform. The paper initially describes the technical details of the new software development platform. This is followed by brief presentations of many new methods, implementations, and features of the OpenMolcas program suite. These developments include novel wave function methods such as stochastic complete active space self-consistent field, density matrix renormalization group (DMRG) methods, and hybrid multiconfigurational wave function and density functional theory models. Some of these implementations include an array of additional options and functionalities" ;
-    sc:name "OpenMolcas" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31509407" .
-
-<https://bio.tools/OpenMolcas_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0176,
-        edam:topic_0593,
-        edam:topic_3314 ;
-    sc:citation <https://doi.org/10.26434/CHEMRXIV.8234021.V2> ;
-    sc:description """From Source Code to Insight.
-
-In this article we describe the OpenMolcas environment and invite the computational chemistry community to collaborate. The open-source project already includes a large number of new developments realized during the transition from the commercial MOLCAS product to the open-source platform. The paper initially describes the technical details of the new software development platform. This is followed by brief presentations of many new methods, implementations, and features of the OpenMolcas program suite. These developments include novel wave function methods such as stochastic complete active space self-consistent field, density matrix renormalization group (DMRG) methods, and hybrid multiconfigurational wave function and density functional theory models. Some of these implementations include an array of additional options and functionalities.
-
-||| HOMEPAGE MISSING!.
-
-||| NAME EQUAL TO (PUB. DIFFERENT) bio.tools/OpenMolcas""" ;
-    sc:featureList edam:operation_0320,
-        edam:operation_0337,
-        edam:operation_2476 ;
-    sc:name "OpenMolcas_autogenerated" ;
-    sc:url "https://doi.org/10.26434/CHEMRXIV.8234021.V2" .
-
 <https://bio.tools/OpenProtein> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_2814,
         edam:topic_3474 ;
@@ -53251,26 +42824,26 @@ In this article we describe the OpenMolcas environment and invite the computatio
 
 <https://bio.tools/OpenSWATH> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ],
+            sc:additionalType "http://edamontology.org/data_3108" ;
+            sc:encodingFormat "http://edamontology.org/format_3710" ;
+            sc:name "Experimental measurement" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ],
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:encodingFormat "http://edamontology.org/format_3654" ;
+            sc:name "Mass spectrometry data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3108" ;
-            sc:name "Experimental measurement" ;
-            sc:sameAs "http://edamontology.org/data_3108" ] ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3246" ;
+            sc:name "Mass spectrometry spectra" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0944" ;
-            sc:name "Peptide mass fingerprint" ;
-            sc:sameAs "http://edamontology.org/data_0944" ],
+            sc:additionalType "http://edamontology.org/data_0944" ;
+            sc:encodingFormat "http://edamontology.org/format_3833" ;
+            sc:name "Peptide mass fingerprint" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:encodingFormat "http://edamontology.org/format_3654" ;
+            sc:name "Mass spectrometry data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -53292,7 +42865,7 @@ In this article we describe the OpenMolcas environment and invite the computatio
     sc:url "http://www.openswath.org" .
 
 <https://bio.tools/OpenSegSPIM> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3382,
         edam:topic_3500 ;
@@ -53312,15 +42885,8 @@ In this article we describe the OpenMolcas environment and invite the computatio
         "Sohail Ahmed",
         "Weimiao Yu" .
 
-<https://bio.tools/OpenSpace> a sc:SoftwareApplication ;
-    sc:citation <https://doi.org/10.1109/TVCG.2019.2934259>,
-        "pubmed:31425082" ;
-    sc:description "> MEDIUM CONFIDENCE! | > HOMEPAGE MISSING! | A System for Astrographics | Human knowledge about the cosmos is rapidly increasing as instruments and simulations are generating new data supporting the formation of theory and understanding of the vastness and complexity of the universe. OpenSpace is a software system that takes on the mission of providing an integrated view of all these sources of data and supports interactive exploration of the known universe from the millimeter scale showing instruments on spacecrafts to billions of light years when visualizing the early universe. The ambition is to support research in astronomy and space exploration, science communication at museums and in planetariums as well as bringing exploratory astrographics to the class room. There is a multitude of challenges that need to be met in reaching this goal such as the data variety, multiple spatio-temporal scales, collaboration capabilities, etc" ;
-    sc:name "OpenSpace" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31425082" .
-
 <https://bio.tools/OpenWorm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_3067,
@@ -53348,44 +42914,8 @@ We're exploring the development of the worm via DevoWorm, an interdisciplinary p
     sc:name "OpenWorm" ;
     sc:url "http://www.openworm.org" .
 
-<https://bio.tools/Open_Babel_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_2258,
-        edam:topic_3292,
-        edam:topic_3332 ;
-    sc:citation <https://doi.org/10.1186/S13321-019-0372-5>,
-        "pmcid:PMC6676618",
-        "pubmed:31372768" ;
-    sc:description "> VERY_LOW CONFIDENCE! | > NAME EQUAL TO (PUB. DIFFERENT) bio.tools/open_babel | > CORRECT NAME OF TOOL COULD ALSO BE 'Babel', 'widely-used', 'rules-based', 'fragment-based' | Fast, efficient fragment-based coordinate generation for Open Babel | Open Babel is a chemical toolbox designed to speak the many languages of chemical data | Open Babel: The Open Source Chemistry Toolbox | Open Babel is a chemical toolbox designed to speak the many languages of chemical data. It's an open, collaborative project allowing anyone to search, convert, analyze, or store data from molecular modeling, chemistry, solid-state materials, biochemistry, or related areas" ;
-    sc:featureList edam:operation_0249,
-        edam:operation_2929 ;
-    sc:license "GPL-2.0" ;
-    sc:name "Open Babel_autogenerated" ;
-    sc:url "http://openbabel.org/" .
-
-<https://bio.tools/Open_Guided_Waves> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0632,
-        edam:topic_3077,
-        edam:topic_3382 ;
-    sc:citation <https://doi.org/10.1038/S41597-019-0208-1>,
-        "pmcid:PMC6778066",
-        "pubmed:31586118" ;
-    sc:description """Temperature affected guided wave propagation in a composite plate complementing the Open Guided Waves Platform.
-
-Collaborators from different research groups with wide-ranging expertise.
-
-Rely on Collective Data, Emphasise Your Work!.
-
-Moll, J.; Kathol, J.; Fritzen, C.-P.; Moix-Bonet, M.; Rennoch, M.; Koerdt, M.; Herrmann, A.; Sause, M. and Bach, M., „Open Guided Waves – Online Platform for Ultrasonic Guided Wave Measurements“, Structural Health Monitoring, 2019, vol. 18(5–6), 1903–1914, DOI: 10.1177/1475921718817169.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'Open Guided Waves Platform'""" ;
-    sc:featureList edam:operation_2428,
-        edam:operation_3435,
-        edam:operation_3454 ;
-    sc:name "Open Guided Waves" ;
-    sc:url "http://www.open-guided-waves.de" .
-
 <https://bio.tools/Open_Source_Registry_System_for_Rare_Diseases_OSSE> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3325 ;
     sc:citation <https://doi.org/10.1007/s00103-017-2536-7>,
@@ -53405,7 +42935,7 @@ Moll, J.; Kathol, J.; Fritzen, C.-P.; Moix-Bonet, M.; Rennoch, M.; Koerdt, M.; H
     biotools:primaryContact "Holger Storf" .
 
 <https://bio.tools/Open_Targets> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3053,
         edam:topic_3336,
@@ -53422,7 +42952,7 @@ Bridging the gap between academic research and pharmaceutical drug development,
     sc:url "https://www.opentargets.org" .
 
 <https://bio.tools/Open_Targets_Platform> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web API",
         "Web application",
@@ -53458,26 +42988,8 @@ The Platform is a freely available resource that is actively maintained with bi-
         <https://www.youtube.com/watch?v=Wd2i2mQN3XM> ;
     sc:url "https://platform.opentargets.org" .
 
-<https://bio.tools/OptFill> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0602,
-        edam:topic_2259,
-        edam:topic_3390,
-        edam:topic_3398,
-        edam:topic_3407 ;
-    sc:citation <https://doi.org/10.1101/796706> ;
-    sc:description """A Novel Optimization-Based Tool to Automate Infeasible Cycle-Free Gapfilling of Genome-Scale Metabolic Models.
-
-SUMMARY Stoichiometric metabolic modeling, particularly Genome-Scale Models (GSMs), is now an indispensable tool for systems biology. The model reconstruction process typically involves collecting information from public databases; however, incomplete systems knowledge leaves gaps in any reconstruction. Current tools for addressing gaps use databases of biochemical functionalities to address gaps on a per-metabolite basis and can provide multiple solutions, but cannot avoid Thermodynamically Infeasible Cycles (TICs), invariably requiring lengthy manual curation. To address these limitations, this work introduces an optimization-based multi-step method named OptFill which performs TIC-avoiding whole-model gapfilling. We applied OptFill to three fictional prokaryotic models of increasing sizes and to a published GSM of Escherichia coli , i JR904.
-
-||| HOMEPAGE MISSING!""" ;
-    sc:featureList edam:operation_3660,
-        edam:operation_3745,
-        edam:operation_3803 ;
-    sc:name "OptFill" ;
-    sc:url "https://doi.org/10.1101/796706" .
-
 <https://bio.tools/OptiJ> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0625,
@@ -53494,16 +43006,8 @@ The three-dimensional imaging of mesoscopic samples with Optical Projection Tomo
     sc:name "OptiJ" ;
     sc:url "https://lag-opt.github.io/" .
 
-<https://bio.tools/OrbTouch> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3474 ;
-    sc:citation <https://doi.org/10.1089/SORO.2018.0086>,
-        "pubmed:31381482" ;
-    sc:description "> MEDIUM CONFIDENCE! | > HOMEPAGE MISSING! | A Deformable Interface for Human Touch Recognition Using Stretchable Carbon Nanotube Dielectric Elastomer Sensors and Deep Neural Networks | This article presents a machine learning approach to map outputs from an embedded array of sensors distributed throughout a deformable body to continuous and discrete virtual states, and its application to interpret human touch in soft interfaces. We integrate stretchable capacitors into a rubber membrane, and use a passive addressing scheme to probe sensor arrays in real time. To process the signals from this array, we feed capacitor measurements into convolutional neural networks that classify and localize touch events on the interface. We implement this concept with a device called OrbTouch" ;
-    sc:name "OrbTouch" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31381482" .
-
 <https://bio.tools/Orbit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3382,
         edam:topic_3474,
@@ -53517,27 +43021,8 @@ The three-dimensional imaging of mesoscopic samples with Optical Projection Tomo
     sc:softwareHelp <https://www.orbit.bio/help/> ;
     sc:url "http://www.orbit.bio" .
 
-<https://bio.tools/Orchestrating_single-cell_analysis> a sc:SoftwareApplication ;
-    sc:additionalType "Library" ;
-    sc:applicationSubCategory edam:topic_0602,
-        edam:topic_0769,
-        edam:topic_3170,
-        edam:topic_3308 ;
-    sc:citation <https://doi.org/10.1038/S41592-019-0654-X>,
-        "pubmed:31792435" ;
-    sc:description """Orchestrating single-cell analysis with Bioconductor.
-
-Online companion to ‘Orchestrating Single-Cell Analysis with Bioconductor’ manuscript by the Bioconductor team.
-
-This is the website for “Orchestrating Single-Cell Analysis with Bioconductor”, a book that teaches users some common workflows for the analysis of single-cell RNA-seq data (scRNA-seq). This book will teach you how to make use of cutting-edge Bioconductor tools to process, analyze, visualize, and explore scRNA-seq data. Additionally, it serves as an online companion for the manuscript “Orchestrating Single-Cell Analysis with Bioconductor”""" ;
-    sc:featureList edam:operation_0313,
-        edam:operation_0337,
-        edam:operation_3435 ;
-    sc:name "Orchestrating single-cell analysis" ;
-    sc:url "http://bioconductor.org/books/release/OSCA/" .
-
 <https://bio.tools/Ordino> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2640,
@@ -53556,7 +43041,7 @@ This is the website for “Orchestrating Single-Cell Analysis with Bioconductor
     biotools:primaryContact "Caleydo Team" .
 
 <https://bio.tools/OrthoFinder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0091,
@@ -53581,13 +43066,19 @@ This is the website for “Orchestrating Single-Cell Analysis with Bioconductor
     biotools:primaryContact <https://orcid.org/0000-0002-9065-8978> .
 
 <https://bio.tools/OrthoMCL> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:citation <https://doi.org/10.1002/0471250953.bi0612s35>,
+        <https://doi.org/10.1101/gr.1224503>,
+        "pmcid:PMC3196566",
+        "pmcid:PMC403725",
+        "pubmed:12952885",
+        "pubmed:21901743" ;
     sc:description "Orthologs are homologs seperated by speciation events. Paralogs are homologs separated by duplication events. Detection of orthologs is becoming much more important with the rapid progress in genome sequencing." ;
     sc:name "OrthoMCL" ;
     sc:url "https://github.com/stajichlab/OrthoMCL" .
 
 <https://bio.tools/OrthoVenn2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API",
         "Web application",
         "Web service" ;
@@ -53608,24 +43099,8 @@ This is the website for “Orchestrating Single-Cell Analysis with Bioconductor
     sc:url "https://orthovenn2.bioinfotoolkits.net" ;
     biotools:primaryContact "Yi Wang" .
 
-<https://bio.tools/Oscillayers> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0084,
-        edam:topic_0610,
-        edam:topic_3500 ;
-    sc:citation <https://doi.org/10.1111/GEB.12979>,
-        "pmcid:PMC6853231",
-        "pubmed:31762691" ;
-    sc:description """A dataset for the study of climatic oscillations over Plio-Pleistocene time-scales at high spatial-temporal resolution.
-
-Motivation:In order to understand how species evolutionarily responded to Plio-Pleistocene climate oscillations (e.g. in terms of speciation, extinction, migration and adaptation), it is first important to have a good understanding of those past climate changes per se. This, however, is currently limited due to the lack of global-scale climatic datasets with high temporal resolution spanning the Plio-Pleistocene. To fill this gap, I here present Oscillayers, a global-scale and region-specific bioclim dataset, facilitating the study of climatic oscillations during the last 5.4 million years at high spatial (2.5 arc-minutes) and temporal (10 kyr time periods) resolution.
-
-||| HOMEPAGE MISSING!""" ;
-    sc:featureList edam:operation_3745 ;
-    sc:name "Oscillayers" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31762691" .
-
 <https://bio.tools/OsteoporosAtlas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0659,
@@ -53649,7 +43124,7 @@ Motivation:In order to understand how species evolutionarily responded to Plio-P
         "Yang Li" .
 
 <https://bio.tools/OutCyte> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0140,
         edam:topic_0154,
@@ -53669,7 +43144,7 @@ OutCyte, as a versatile tool, can predict input proteins as signal-peptide conta
     sc:url "http://www.outcyte.com" .
 
 <https://bio.tools/OutbreakFinder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3168,
         edam:topic_3293,
@@ -53684,24 +43159,8 @@ OutCyte, as a versatile tool, can predict input proteins as signal-peptide conta
     sc:name "OutbreakFinder" ;
     sc:url "https://github.com/skypes/Newton-method-MDS" .
 
-<https://bio.tools/P-POCUS> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0634,
-        edam:topic_3318,
-        edam:topic_3403 ;
-    sc:citation <https://doi.org/10.1136/RAPM-2019-100632>,
-        "pubmed:31678962" ;
-    sc:description """Improved diagnostic accuracy of pathology with the implementation of a perioperative point-of-care ultrasound service.
-
-INTRODUCTION:The utility of perioperative point-of-care ultrasound (P-POCUS) is rapidly growing. The successful implementation of a comprehensive P-POCUS curriculum, Focused PeriOperative Risk Evaluation Sonography Involving Gastro-abdominal, Hemodynamic, and Trans-thoracic Ultrasound (FORESIGHT), has been demonstrated.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'P-POCUS examinations'""" ;
-    sc:name "P-POCUS" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31678962" .
-
 <https://bio.tools/P3BSseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3168,
         edam:topic_3295,
@@ -53720,7 +43179,7 @@ INTRODUCTION:The utility of perioperative point-of-care ultrasound (P-POCUS) is
     biotools:primaryContact "Marcos J. Araúzo-Bravo" .
 
 <https://bio.tools/P3Fold> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0130,
@@ -53740,18 +43199,8 @@ Predicting Protein Folding Routes.""" ;
     sc:name "P3Fold" ;
     sc:url "http://csb.cs.mcgill.ca/P3Fold" .
 
-<https://bio.tools/P5> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0769 ;
-    sc:citation <https://doi.org/10.1109/TVCG.2019.2934537>,
-        "pubmed:31442985" ;
-    sc:description "> HOMEPAGE MISSING! | > NAME (P5) SIMILAR TO (PUB. DIFFERENT) bio.tools/p53 (p53) | Portable Progressive Parallel Processing Pipelines for Interactive Data Analysis and Visualization | We present P5, a web-based visualization toolkit that combines declarative visualization grammar and GPU computing for progressive data analysis and visualization. To interactively analyze and explore big data, progressive analytics and visualization methods have recently emerged. Progressive visualizations of incrementally refining results have the advantages of allowing users to steer the analysis process and make early decisions. P5 leverages declarative grammar for specifying visualization designs and exploits GPU computing to accelerate progressive data processing and rendering. The declarative specifications can be modified during progressive processing to create different visualizations for analyzing the intermediate results" ;
-    sc:featureList edam:operation_0337,
-        edam:operation_3436 ;
-    sc:name "P5" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31442985" .
-
 <https://bio.tools/PACES> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_3474,
@@ -53767,7 +43216,7 @@ Predicting Protein Folding Routes.""" ;
     sc:url "http://www.rnanut.net/paces/" .
 
 <https://bio.tools/PACKMAN> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0176,
@@ -53785,7 +43234,7 @@ PACKMAN: PACKing and Motion ANalysis""" ;
     sc:url "https://PACKMAN.bb.iastate.edu/" .
 
 <https://bio.tools/PACKMOL-Memgen> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0153,
         edam:topic_0769,
@@ -53805,10 +43254,10 @@ PACKMAN: PACKing and Motion ANalysis""" ;
 
 <https://bio.tools/PADMet> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:encodingFormat "http://edamontology.org/format_1637" ;
+            sc:name "Pathway or network" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0602 ;
@@ -53831,7 +43280,7 @@ PACKMAN: PACKing and Motion ANalysis""" ;
     sc:url "https://github.com/AuReMe/padmet" .
 
 <https://bio.tools/PADS_Arsenal> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0623,
@@ -53855,14 +43304,14 @@ PADS Arsenal A Database of Prokaryotic Defense Systems Related Genes.""" ;
 
 <https://bio.tools/PAFScaff> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0925" ;
-            sc:name "Sequence assembly" ;
-            sc:sameAs "http://edamontology.org/data_0925" ] ;
+            sc:additionalType "http://edamontology.org/data_0925" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence assembly" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0925" ;
-            sc:name "Sequence assembly" ;
-            sc:sameAs "http://edamontology.org/data_0925" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0925" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence assembly" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622 ;
     sc:author <https://orcid.org/0000-0002-3645-5539> ;
@@ -53880,7 +43329,7 @@ PADS Arsenal A Database of Prokaryotic Defense Systems Related Genes.""" ;
     biotools:primaryContact <https://orcid.org/0000-0002-3645-5539> .
 
 <https://bio.tools/PAGE-Net> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_2640,
@@ -53899,7 +43348,7 @@ Integration of aggregated pathological images and genomic data""" ;
     sc:url "https://github.com/DataX-JieHao/PAGE-Net" .
 
 <https://bio.tools/PAMOGK> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2640,
@@ -53919,7 +43368,7 @@ For mosek set environment variable MOSEKLM_LICENSE_FILE to your license file ins
     sc:url "https://pypi.org/project/pamogk/" .
 
 <https://bio.tools/PANDA-view> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -53939,29 +43388,8 @@ For mosek set environment variable MOSEKLM_LICENSE_FILE to your license file ins
     biotools:primaryContact "Cheng Chang",
         "Yunping Zhu" .
 
-<https://bio.tools/PANDA_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0108,
-        edam:topic_2229,
-        edam:topic_2830,
-        edam:topic_3068,
-        edam:topic_3489 ;
-    sc:citation <https://doi.org/10.1089/CMB.2019.0384>,
-        "pubmed:31855463" ;
-    sc:description """Two Bioinformatics Tools to Support Analysis of Mass Cytometry Data.
-
-PANDA, the Population Analysis Database.
-
-PANDA mainly focuses the curation effort on the immune system and on the cell populations participating in skeletal muscle regeneration. The current release contains 79 different cell types in H. sapiens,M. musculus, R. norvegicus and G. gallus but aims at increasing the amount of curated data, extending curations to other tissues, organs and organisms.
-
-||| NAME EQUAL TO (PUB. DIFFERENT) bio.tools/panda""" ;
-    sc:featureList edam:operation_2422,
-        edam:operation_2495,
-        edam:operation_3799 ;
-    sc:name "PANDA_autogenerated" ;
-    sc:url "https://github.com/wynstep/PANDA" .
-
 <https://bio.tools/PANPASCO> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3305,
@@ -53982,7 +43410,7 @@ Next-generation sequencing based base-by-base distance measures have become an i
     sc:url "https://gitlab.com/rki_bioinformatics/panpasco" .
 
 <https://bio.tools/PARC> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2229,
@@ -53995,23 +43423,14 @@ Next-generation sequencing based base-by-base distance measures have become an i
     sc:name "PARC" ;
     sc:url "https://github.com/ShobiStassen/PARC" .
 
-<https://bio.tools/PARSUC> a sc:SoftwareApplication ;
-    sc:citation <https://doi.org/10.3390/S19153438>,
-        "pmcid:PMC6696378",
-        "pubmed:31387335" ;
-    sc:description "> MEDIUM CONFIDENCE! | > HOMEPAGE MISSING! | A Parallel Subsampling-Based Method for Clustering Remote Sensing Big Data | Remote sensing big data (RSBD) is generally characterized by huge volumes, diversity, and high dimensionality. Mining hidden information from RSBD for different applications imposes significant computational challenges. Clustering is an important data mining technique widely used in processing and analyzing remote sensing imagery. However, conventional clustering algorithms are designed for relatively small datasets. When applied to problems with RSBD, they are, in general, too slow or inefficient for practical use. In this paper, we proposed a parallel subsampling-based clustering (PARSUC) method for improving the performance of RSBD clustering in terms of both efficiency and accuracy" ;
-    sc:featureList edam:operation_3432 ;
-    sc:name "PARSUC" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31387335" .
-
 <https://bio.tools/PASA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "Program to Assemble Spliced Alignment. PASA, acronym for Program to Assemble Spliced Alignments, is a eukaryotic genome annotation tool that exploits spliced alignments of expressed transcript sequences to automatically model gene structures, and to maintain gene structure annotation consistent with the most recently available experimental sequence data. PASA also identifies and classifies all splicing variations supported by the transcript alignments." ;
     sc:name "PASA" ;
     sc:url "https://sourceforge.net/projects/pasa/" .
 
 <https://bio.tools/PASCCA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3512,
@@ -54036,7 +43455,7 @@ Next-generation sequencing based base-by-base distance measures have become an i
         "Yuqi Long" .
 
 <https://bio.tools/PASER> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3304,
         edam:topic_3384,
@@ -54049,7 +43468,7 @@ Next-generation sequencing based base-by-base distance measures have become an i
     sc:url "http://github.com/DepartmentofNeurophysiology/Paser" .
 
 <https://bio.tools/PASNet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3360,
@@ -54069,54 +43488,14 @@ Next-generation sequencing based base-by-base distance measures have become an i
     sc:softwareHelp <https://github.com/DataX-JieHao/PASNet/blob/master/README.md> ;
     sc:url "https://github.com/DataX-JieHao/PASNet" .
 
-<https://bio.tools/PASS01410> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0080,
-        edam:topic_0121,
-        edam:topic_0154,
-        edam:topic_3360,
-        edam:topic_3417 ;
-    sc:citation <https://doi.org/10.1016/J.DIB.2019.104478>,
-        "pmcid:PMC6811982",
-        "pubmed:31667243" ;
-    sc:description """Data on corneal proteome and differentially expressed corneal proteins in highly myopic chicks using a data independent quantification approach.
-
-submitter: Byung Soo Kang <elyite@gmail.com>.
-
-submitter_organization The Hong Kong Polytechnic University.
-
-Official URL for this dataset: http://www.peptideatlas.org/PASS/PASS01410.
-
-||| NAME (PASS01410) SIMILAR TO (PUB. DIFFERENT) bio.tools/PacBio_Sequencing_Simulator (PaSS), bio.tools/pass (PASS), bio.tools/pass2 (PASS2).
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'SWATH-MS', 'corneal', 'IDA', 'myopic'""" ;
-    sc:featureList edam:operation_3454,
-        edam:operation_3767,
-        edam:operation_3799 ;
-    sc:name "PASS01410" ;
-    sc:url "http://www.peptideatlas.org/PASS/PASS01410" .
-
-<https://bio.tools/PASTA_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3305,
-        edam:topic_3318,
-        edam:topic_3855 ;
-    sc:citation <https://doi.org/10.1289/EHP4603>,
-        "pmcid:PMC6792377",
-        "pubmed:31532248" ;
-    sc:description "> LOW CONFIDENCE! | > NAME EQUAL TO (PUB. DIFFERENT) bio.tools/pasta | > CORRECT NAME OF TOOL COULD ALSO BE 'walking travel', 'walking', 'travel', 'Correlates Walking Travel Seven European Cities' | Correlates of Walking for Travel in Seven European Cities | {\"id\": \"1xaud0e0JPduOgxn5HwyC3Oa8qcH_yI1i\", \"title\": \"POI_CODE_AND_NAMES_PASTA.xlsx\", \"mimeType\": \"application\\/vnd.openxmlformats-officedocument.spreadsheetml.sheet\"}" ;
-    sc:featureList edam:operation_3557,
-        edam:operation_3891 ;
-    sc:name "PASTA_autogenerated" ;
-    sc:softwareHelp <http://pastaproject.eu/fileadmin/editor-upload/sitecontent/City_survey/PASTA-questionnaires.pdf> ;
-    sc:url "https://tinyurl.com/PASTA-POI" .
-
 <https://bio.tools/PASTEClassifier> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "The PASTEClassifier (Pseudo Agent System for Transposable Elements Classification) is a transposable element (TE) classifier searching for structural features. It browses the whole spectrum of possible classifications at order level using Wicker hierarchical system. It is also able to automatically classify other repeated elements like SSR (Simple Sequence Repeats), rDNA or potential repeated host genes. The output is designed to facilitate manual curation by providing to the biologist all characteristics that have been found on each TE sequence." ;
     sc:name "PASTEClassifier" ;
     sc:url "https://urgi.versailles.inra.fr/Tools/PASTEClassifier" .
 
 <https://bio.tools/PASTMUS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0154,
@@ -54138,7 +43517,7 @@ Identification of functional elements for a protein of interest is important for
     sc:url "https://figshare.com/articles/PASTMUS_mapping_functional_elements_at_single_amino_acid_resolution_in_human_cells/10435370" .
 
 <https://bio.tools/PASeq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0781 ;
@@ -54148,29 +43527,8 @@ Identification of functional elements for a protein of interest is important for
     sc:name "PASeq" ;
     sc:url "https://www.paseq.org" .
 
-<https://bio.tools/PATHFx> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0634,
-        edam:topic_3416,
-        edam:topic_3421,
-        edam:topic_3577 ;
-    sc:citation <https://doi.org/10.1097/CORR.0000000000001081>,
-        "pubmed:31834163" ;
-    sc:description """External Validation of PATHFx Version 3.0 in Patients Treated Surgically and Non-surgically for Symptomatic Skeletal Metastases.
-
-What’s different in PATHFx v3.0? A contemporary patient population.
-
-Open source architecture powered by the International Bone Metastasis Registry.
-
-We’ve upgraded PATHFx using more contemporary patients, in an effort to modernize the models. We designed the open source PATHFx tool to better integrate with providers, electronic health records, registries and other industry databases. Our machine-learning code, created in-house specifically for PATHFx, allows for greater compatibility and collaboration, while also enabling us to streamline the evolution of new models.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'BACKGROUND:PATHFx', 'PATHFx version 3.0'""" ;
-    sc:featureList edam:operation_2428,
-        edam:operation_3503 ;
-    sc:name "PATHFx" ;
-    sc:url "https://www.pathfx.org" .
-
 <https://bio.tools/PATHcrosstalk> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2640,
@@ -54191,7 +43549,7 @@ We’ve upgraded PATHFx using more contemporary patients, in an effort to modern
         "Zhangsheng Yu" .
 
 <https://bio.tools/PATOPA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0602,
@@ -54214,27 +43572,8 @@ The file "example1.R” is an example of R codes which read the data file “rec
     sc:name "PATOPA" ;
     sc:url "https://github.com/MarkeyBBSRF/PATOPA" .
 
-<https://bio.tools/PATTIE> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0605,
-        edam:topic_3068,
-        edam:topic_3361 ;
-    sc:citation <https://doi.org/10.1101/807404> ;
-    sc:description """Publication access through tiered interaction & exploration.
-
-PLOS Through Tiered Interaction & Exploration.
-
-PLOS Access Through Tiered Interaction & Exploration.
-
-||| COMMON LINK WITH (PUB. & NAME DIFFERENT) bio.tools/gsaa (UNC.EDU).
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'vzlib'""" ;
-    sc:featureList edam:operation_2422,
-        edam:operation_2428 ;
-    sc:name "PATTIE" ;
-    sc:url "http://pattie.unc.edu/plos" .
-
 <https://bio.tools/PAVFinder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3170,
@@ -54254,25 +43593,8 @@ PAVFinder is a Python package that detects structural variants from de novo asse
     sc:name "PAVFinder" ;
     sc:url "https://github.com/bcgsc/pavfinder" .
 
-<https://bio.tools/PBLPI> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0091,
-        edam:topic_0128,
-        edam:topic_0659 ;
-    sc:citation <https://doi.org/10.1016/J.YGENO.2019.09.018>,
-        "pubmed:31639442" ;
-    sc:description """A path-based computational model for long non-coding RNA-protein interaction prediction.
-
-Recently, lncRNAs have attracted accumulating attentions because more and more experimental researches have shown lncRNA can play critical roles in many biological processes. Predicting potential interactions between lncRNAs and proteins are key to understand the lncRNAs biological functions. But traditional biological experiments are expensive and time-consuming, network similarity methods provide a powerful solution to computationally predict lncRNA-protein interactions. In this work, a novel path-based lncRNA-protein interaction (PBLPI) prediction model is proposed by integrating protein semantic similarity, lncRNA functional similarity, known human lncRNA-protein interactions, and Gaussian interaction profile kernel similarity.
-
-||| HOMEPAGE MISSING!""" ;
-    sc:featureList edam:operation_2492,
-        edam:operation_3439,
-        edam:operation_3901 ;
-    sc:name "PBLPI" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31639442" .
-
 <https://bio.tools/PBWT-Query> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3337 ;
@@ -54286,30 +43608,8 @@ Recently, lncRNAs have attracted accumulating attentions because more and more e
     sc:name "PBWT-Query" ;
     sc:url "http://genome.ucf.edu/pbwt-query" .
 
-<https://bio.tools/PCA> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0102,
-        edam:topic_3056,
-        edam:topic_3337 ;
-    sc:citation <https://doi.org/10.1101/841452> ;
-    sc:description """Efficient toolkit implementing best practices for principal component analysis of population genetic data.
-
-## Loading required package: bigstatsr.
-
-Let us use a subsetted version of the 1000 Genomes project data we provide. Some quality control has already been done; otherwise, you can use snp_plinkQC().
-
-Principal Component Analysis (PCA).
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'bigsnpr' (bio.tools/bigsnpr), 'PC19', 'PC40', 'bigutilsr'""" ;
-    sc:featureList edam:operation_2939,
-        edam:operation_3196,
-        edam:operation_3557,
-        edam:operation_3629,
-        edam:operation_3891 ;
-    sc:name "PCA" ;
-    sc:url "http://privefl.github.io/bigsnpr/articles/bedpca.html" .
-
 <https://bio.tools/PCA-PAM50> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3360,
@@ -54330,7 +43630,7 @@ Principal Component Analysis (PCA).
     biotools:primaryContact "Praveen K. Raj Kumar" .
 
 <https://bio.tools/PCAViz> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0176,
         edam:topic_0602,
@@ -54353,24 +43653,8 @@ Jacob Durrant software July 29, 2019September 30, 2019""" ;
     sc:name "PCAViz" ;
     sc:url "http://durrantlab.com/pcaviz/" .
 
-<https://bio.tools/PCCMA> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3393 ;
-    sc:citation <https://doi.org/10.1016/J.HEALTHPOL.2019.12.004>,
-        "pubmed:31864525" ;
-    sc:description """The development of the Primary Care Clusters Multidimensional Assessment (PCCMA).
-
-A strong primary care (PC) system is essential for an efficient and high-quality healthcare service. Many countries have adopted a model of PC that encourages different healthcare providers to work together, at scale, in multidisciplinary multiagency teams (PC clusters). The aim of the present work was to develop a quantitative instrument for the systematic and comprehensive assessment of PC clusters. This was a non-experimental, mixed-methods study grouping four work packages (WP), and involving PC cluster leads and a wide range of key stakeholders from across Wales. Interviews with 22 PC cluster leads (34 %) investigated the clusters' functioning (WP1). A systematic review identified relevant PC assessment frameworks and instruments (WP2).
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'development Primary Care Clusters Multidimensional Assessment', 'PC', 'WP', 'mixed-methods'""" ;
-    sc:featureList edam:operation_3432,
-        edam:operation_3799 ;
-    sc:name "PCCMA" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31864525" .
-
 <https://bio.tools/PCHi-C> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0749,
@@ -54391,7 +43675,7 @@ Analysis and visualisation tools for PCHi-C interaction networks""" ;
     sc:url "https://github.com/IMCS-Bioinformatics/PCHiCNetworkExplorer" .
 
 <https://bio.tools/PCIR> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0780,
@@ -54413,7 +43697,7 @@ Welcome to PCIR! Plant Chloroplast Inverted Repeats (PCIR) is an interactive, we
     sc:url "http://biodb.sdau.edu.cn/pcir/index.php" .
 
 <https://bio.tools/PCMBase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0625,
@@ -54435,21 +43719,8 @@ Phylogenetic comparative methods represent models of continuous trait data assoc
     sc:name "PCMBase" ;
     sc:url "https://github.com/venelin/PCMBase" .
 
-<https://bio.tools/PCOS> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3407,
-        edam:topic_3411,
-        edam:topic_3420 ;
-    sc:citation <https://doi.org/10.1093/HROPEN/HOY021>,
-        "pmcid:PMC6396642",
-        "pubmed:31486807" ;
-    sc:description "> MEDIUM CONFIDENCE! | > CORRECT NAME OF TOOL COULD ALSO BE 'infertility PCOS' | Evidence summaries and recommendations from the international evidence-based guideline for the assessment and management of polycystic ovary syndrome | Monash Centre for Health Research and Implementation (MCHRI) | Our PCOS research has six themes: Improve PCOS diagnosis; Fertility treatments; Biological origins, aetiology and pathology of PCOS; Interventions; Defining the natural history of PCOS; and Epidemiology and data use in PCOS | AskPCOS is the most trustworthy and comprehensive PCOS app available that was developed by leading PCOS experts from around the world and co-designed with women with PCOS. Available from the App Store and Google Play" ;
-    sc:featureList edam:operation_3435 ;
-    sc:name "PCOS" ;
-    sc:softwareHelp <https://www.monash.edu/__data/assets/pdf_file/0020/1412282/PCOS-Guideline_Technical-report.pdf> ;
-    sc:url "http://monash.edu/medicine/sphpm/mchri/pcos" .
-
 <https://bio.tools/PCOSBase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0121,
@@ -54468,18 +43739,8 @@ Nor Afiqah-Aleng, Sarahani Harun, Mohd Rusman Arief A-Rahman, Nor Azlan Nor Muha
     sc:name "PCOSBase" ;
     sc:url "http://pcosbase.org" .
 
-<https://bio.tools/PCSR> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3376,
-        edam:topic_3403,
-        edam:topic_3423 ;
-    sc:citation <https://doi.org/10.5588/IJTLD.18.0428>,
-        "pubmed:31533877" ;
-    sc:description "> LOW CONFIDENCE! | > HOMEPAGE MISSING! | > CORRECT NAME OF TOOL COULD ALSO BE 'PCSR people', 'XDR-TB' | Palliative care and symptom relief for people affected by multidrug-resistant tuberculosis | The World Health Organization (WHO) defines palliative care as the prevention and relief of the physical, psychological, social and spiritual suffering of adults and children with life-threatening illnesses and psycho-social support for their families. Palliative care and symptom relief (PCSR) also addresses suffering in nonlife-threatening situations such as after cure. PCSR should never be considered a substitute for tuberculosis (TB) prevention and treatment, but should be accessible by everyone in need. PCSR can reduce suffering and improve quality of life of patients with end-stage chronic illnesses while reducing costs for health care systems and providing financial risk protection for patients' families" ;
-    sc:name "PCSR" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31533877" .
-
 <https://bio.tools/PDBUSQLExtractor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0097 ;
     sc:citation <https://doi.org/10.3390/molecules24010179>,
@@ -54499,76 +43760,8 @@ Nor Afiqah-Aleng, Sarahani Harun, Mohd Rusman Arief A-Rahman, Nor Azlan Nor Muha
     sc:url "http://zti.polsl.pl/w3/dmrozek/science/pdbusqlext.htm" ;
     biotools:primaryContact "D. Mrozek" .
 
-<https://bio.tools/PDBe-KB> a sc:SoftwareApplication ;
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-        edam:topic_0081,
-        edam:topic_0091,
-        edam:topic_0593,
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-    sc:citation <https://doi.org/10.1093/NAR/GKZ853>,
-        "pubmed:31584092" ;
-    sc:description """a community-driven resource for structural and functional annotations.
-
-The European Bioinformatics Institute.
-
-PDBe-KB Guidelines for Collaborating.
-
-What are the Aggregated Views of Proteins?.
-
-REST API based on PDBe data hosted on Neo4J Graph Database.
-
-PDBe-KB (Protein Data Bank in Europe - Knowledge Base) is a community-driven resource managed by the PDBe team, collating functional annotations and predictions for structure data in the PDB archive.
-
-Protein Data Bank in Europe - Knowledge Base (PDBe-KB) is a community-driven resource managed by the PDBe team, collating functional annotations and predictions for structure data in the PDB archive.
-
-The PDBe-KB aggregated view of proteins provides a comprehensive overview of structural data available in PDB for a full-length protein sequence.
-
-||| COMMON LINK WITH (PUB. & NAME DIFFERENT) bio.tools/pdbepisa (PDBE.ORG), bio.tools/pdbexplore (PDBE.ORG), bio.tools/pdbefold (PDBE.ORG)""" ;
-    sc:featureList edam:operation_0474,
-        edam:operation_1812,
-        edam:operation_2422,
-        edam:operation_3431,
-        edam:operation_3436 ;
-    sc:name "PDBe-KB" ;
-    sc:softwareHelp <https://pdbe-kb.org/api> ;
-    sc:url "https://pdbe-kb.org" .
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-<https://bio.tools/PDBe_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0097,
-        edam:topic_0099,
-        edam:topic_0152,
-        edam:topic_0154,
-        edam:topic_3047 ;
-    sc:citation <https://doi.org/10.1093/NAR/GKZ990>,
-        "pubmed:31691821" ;
-    sc:description """improved findability of macromolecular structure data in the PDB.
-
-Search the PDB archive ‹ PDBe ‹ EMBL-EBI.
-
-Index of /pub/databases/pdb_versioned/.
-
-This website requires cookies, and the limited processing of your personal data in order to function. By using the site you are agreeing to this as outlined in our Privacy Notice and Terms of Use .
-
-What are the Aggregated Views of Proteins?.
-
-PDBe-KB (Protein Data Bank in Europe - Knowledge Base) is a community-driven resource managed by the PDBe team, collating functional annotations and predictions for structure data in the PDB archive.
-
-The PDBe-KB aggregated view of proteins provides a comprehensive overview of structural data available in PDB for a full-length protein sequence.
-
-||| NAME EQUAL TO (PUB. DIFFERENT) bio.tools/pdbe.
-
-||| COMMON LINK WITH (PUB. & NAME DIFFERENT) bio.tools/pdbepisa (PDBE.ORG), bio.tools/pdbexplore (PDBE.ORG), bio.tools/pdbefold (PDBE.ORG)""" ;
-    sc:featureList edam:operation_0337,
-        edam:operation_2421,
-        edam:operation_2422,
-        edam:operation_3431,
-        edam:operation_3436 ;
-    sc:name "PDBe_autogenerated" ;
-    sc:softwareHelp <http://pdbe.org/api> ;
-    sc:url "http://pdbe.org" .
-
 <https://bio.tools/PDEparams> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:citation <https://doi.org/10.1101/631226> ;
     sc:description "Parameter fitting toolbox for partial differential equations in Python." ;
@@ -54583,32 +43776,8 @@ The PDBe-KB aggregated view of proteins provides a comprehensive overview of str
     sc:url "http://github.com/systemsmedicine/PDE_params" ;
     biotools:primaryContact "Esteban A. Hernandez-Vargas" .
 
-<https://bio.tools/PDF> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3068,
-        edam:topic_3384,
-        edam:topic_3411,
-        edam:topic_3489,
-        edam:topic_3794 ;
-    sc:citation <https://doi.org/10.7287/PEERJ.PREPRINTS.1594V3> ;
-    sc:description """An integrated toolbox for creating ready-to-publish figures.
-
-PDF Reference and Adobe Extensions to the PDF Specification.
-
-PDF Reference and Adobe Extensions to the PDF Specification : Adobe Developer Connection.
-
-The PDF Reference was first published when Adobe Acrobat was introduced in 1993. Since then, updated versions of the PDF Reference have been made available from Adobe via the Web, and from time to time, in traditional paper documents made available from book publishers.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'Enriching scientific publications interactive 3D PDF', 'ready-to-publish', 'toolbox', 'royalty-free'""" ;
-    sc:featureList edam:operation_0337,
-        edam:operation_3435,
-        edam:operation_3436,
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-    sc:name "PDF" ;
-    sc:softwareHelp <http://wwwimages.adobe.com/content/dam/Adobe/en/devnet/pdf/pdfs/PDF32000_2008.pdf> ;
-    sc:url "http://www.adobe.com/devnet/pdf/pdf_reference.edu.html" .
-
 <https://bio.tools/PDGA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3047,
         edam:topic_3056,
@@ -54620,59 +43789,8 @@ In drug discovery one uses chemical space as a concept to organize molecules acc
     sc:name "PDGA" ;
     sc:url "https://github.com/reymond-group/PeptideDesignGA" .
 
-<https://bio.tools/PDGA_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0154,
-        edam:topic_3047,
-        edam:topic_3056,
-        edam:topic_3336 ;
-    sc:citation <https://doi.org/10.26434/CHEMRXIV.10247567.V2> ;
-    sc:description """Populating Chemical Space with Peptides using a Genetic Algorithm.
-
-In drug discovery one uses chemical space as a concept to organize molecules according to their structures and properties. One often would like to generate new possible molecules at a specific location in chemical space marked by a molecule of interest. Herein we report the peptide design genetic algorithm (PDGA, code available at https: github.com reymondgroup PeptideDesignGA), a computational tool capable of producing peptide sequences of various chain topologies (linear, cyclic polycyclic or dendritic) in proximity of any molecule of interest in a chemical space defined by MXFP, an atom-pair fingerprint describing molecular shape and pharmacophores. We show that PDGA generates high similarity analogs of bioactive peptides, including in selected cases known active analogs, as well as of non-peptide targets.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'faerun', 'peptide design genetic algorithm'""" ;
-    sc:name "PDGA_autogenerated" ;
-    sc:url "https://doi.org/10.26434/CHEMRXIV.10247567.V2" .
-
-<https://bio.tools/PDNAbenchmarks> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0128,
-        edam:topic_0166,
-        edam:topic_0821 ;
-    sc:citation <https://doi.org/10.1101/743617> ;
-    sc:description "> MEDIUM CONFIDENCE! | > CORRECT NAME OF TOOL COULD ALSO BE 'DNA', 'jats:inline-formula' | Multiple protein-DNA interfaces unravelled by evolutionary information, physico-chemical and geometrical properties | Protein-DNA complexes benchmarks | The high resolution protein-DNA complexes benchmark (HR-PDNA187) comprises 187 structures of protein-(ds)DNA complexes non-redundant at 25% sequence identity | This benchmark comprises the 82 HOLO(bound)-APO(unbound) pairs available in the Protein Data Bank (http: www.rcsb.org ) amongst the 187 protein-DNA complexes comprised in HR-PDNA187" ;
-    sc:featureList edam:operation_3900,
-        edam:operation_3901,
-        edam:operation_3903 ;
-    sc:name "PDNAbenchmarks" ;
-    sc:url "http://www.lcqb.upmc.fr/PDNAbenchmarks" .
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-<https://bio.tools/PDXs> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0199,
-        edam:topic_0208,
-        edam:topic_2640,
-        edam:topic_3170,
-        edam:topic_3379 ;
-    sc:citation <https://doi.org/10.1101/790246> ;
-    sc:description """Systematic Establishment of Robustness and Standards in Patient-Derived Xenograft Experiments and Analysis.
-
-Patient Derived Xenograft Search Form.
-
-MTB has been designed to aid researchers in such areas as choosing experimental models, reviewing patterns of mutations in specific cancers, and identifying genes that are commonly mutated across a spectrum of cancers.
-
-Patient Derived Xenograft (PDX) models for cancer research are created by the implantation of human cells and tumor tissue into immune compromised mouse hosts. PDX models provide a platform for in vivo cancer biology studies and pre-clinical cancer drug efficacy testing. The current state of the art mouse host is the "NOD-SCID-Gamma2" (NSG) mouse. NSG mice lack mature T and B cells, have no functional natural killer cells, and are deficient in both innate immunity and cytokine signaling.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'PDX', 'PDXNet', 'PDTC', 'tumor-in-mouse'""" ;
-    sc:featureList edam:operation_2421,
-        edam:operation_3435,
-        edam:operation_3629,
-        edam:operation_3891 ;
-    sc:name "PDXs" ;
-    sc:url "http://tumor.informatics.jax.org/mtbwi/pdxSearch.do" .
-
 <https://bio.tools/PEATmoss> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0780,
@@ -54691,42 +43809,8 @@ PEATmoss is an interactive tool to visualize gene expression data. These help pa
     sc:softwareHelp <https://peatmoss.online.uni-marburg.de/help> ;
     sc:url "https://peatmoss.online.uni-marburg.de" .
 
-<https://bio.tools/PEC> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0749,
-        edam:topic_3303,
-        edam:topic_3384 ;
-    sc:citation <https://doi.org/10.1186/S12909-019-1899-X>,
-        "pmcid:PMC6916454",
-        "pubmed:31842868" ;
-    sc:description """A novel approach to the program evaluation committee.
-
-BACKGROUND:The Accreditation Council for Graduate Medical Education requires each residency program to have a Program Evaluation Committee (PEC) but does not specify how the PEC should be designed. We sought to develop a PEC that promotes resident leadership and provides actionable feedback. METHODS:Participants were residents and faculty in the Traditional Internal Medicine residency program at Yale School of Medicine (YSM). One resident and one faculty member facilitated a 1-h structured group discussion to obtain resident feedback on each rotation. PEC co-facilitators summarized the feedback in written form, then met with faculty Firm Chiefs overseeing each rotation and with residency program leadership to discuss feedback and generate action plans. This PEC process was implemented in all inpatient and outpatient rotations over a 4-year period.
-
-||| HOMEPAGE MISSING!""" ;
-    sc:name "PEC" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31842868" .
-
-<https://bio.tools/PEER> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3337,
-        edam:topic_3417,
-        edam:topic_3444 ;
-    sc:citation <https://doi.org/10.1093/CERCOR/BHZ157>,
-        "pubmed:31595961" ;
-    sc:description """Evaluating fMRI-Based Estimation of Eye Gaze During Naturalistic Viewing.
-
-Predictive Eye Estimation Regression.
-
-Son, J., Ai, L., Lim, R., Xu, T., Colcombe, S., Franco, A., Cloud, J., LaConte, S., Lisinski, J., Klein, A., Craddock, C., Milham, M. (2018). Evaluating fMRI-Based Estimation of Eye Gaze during Naturalistic Viewing. bioRxiv. https://doi.org/10.1101/347765.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'eye gaze'""" ;
-    sc:featureList edam:operation_2428,
-        edam:operation_3443,
-        edam:operation_3659 ;
-    sc:name "PEER" ;
-    sc:url "https://github.com/ChildMindInstitute/pypeer" .
-
 <https://bio.tools/PEFF> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0601,
@@ -54748,7 +43832,7 @@ Son, J., Ai, L., Lim, R., Xu, T., Colcombe, S., Franco, A., Cloud, J., LaConte,
     biotools:primaryContact <https://orcid.org/0000-0001-8732-0928> .
 
 <https://bio.tools/PELE-MSM> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0209,
@@ -54771,16 +43855,16 @@ PELE-MSM was applied on four diverse protein and ligand systems, successfully ra
 
 <https://bio.tools/PEMA> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1931" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3707" ;
-            sc:name "Biodiversity data" ;
-            sc:sameAs "http://edamontology.org/data_3707" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3707" ;
+            sc:name "Biodiversity data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Workflow" ;
+    sc:applicationSubCategory edam:topic_3050 ;
     sc:description "a flexible Pipeline for Environmental DNA Metabarcoding Analysis of the 16S/18S rRNA, ITS and COI marker genes" ;
     sc:featureList edam:operation_3200 ;
     sc:isAccessibleForFree true ;
@@ -54789,49 +43873,8 @@ PELE-MSM was applied on four diverse protein and ligand systems, successfully ra
     sc:softwareHelp <https://docs.google.com/presentation/d/1lVH23DPa2NDNBhVvOTRoip8mraw8zfw8VQwbK4vkB1U/edit?fbclid=IwAR14PpWfPtxB8lLBBnoxs7UbG3IJfkArrJBS5f2kRA__kvGDUb8wiJ2Cy_s#slide=id.g57f092f54d_1_21> ;
     sc:url "https://github.com/hariszaf/pema" .
 
-<https://bio.tools/PERLC> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0634,
-        edam:topic_3305,
-        edam:topic_3489 ;
-    sc:citation <https://doi.org/10.1097/PHH.0000000000000811>,
-        "pmcid:PMC6791563",
-        "pubmed:31589183" ;
-    sc:description """Enhancing Access to Quality Online Training to Strengthen Public Health Preparedness and Response.
-
-PERLC Training Database and Guide.
-
-The PERLC Training Catalog features online training and other learning materials to help public health professionals and their partners prepare for and respond to emergencies. These materials were developed by university-based Preparedness and Emergency Response Learning Centers (PERLCs) funded by the Centers for Disease Control and Prevention (CDC) from 2010 to 2015. They mostly consist of online courses, as well as some exercises, toolkits and guides. The majority of available online PERLC materials are introductory-level, therefore, most of the content in this catalog is best suited for users who are looking to build awareness or begin their education in these topics.
-
-To learn more about the development of this catalog, visit the About page.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'preparedness', 'emergency preparedness'""" ;
-    sc:featureList edam:operation_2421,
-        edam:operation_2428 ;
-    sc:name "PERLC" ;
-    sc:url "http://perlc.nwcphp.org" .
-
-<https://bio.tools/PERSONALISED_MEASUREMENT-BASED_CARE_YOUTH_MENTAL> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3304,
-        edam:topic_3305,
-        edam:topic_3403,
-        edam:topic_3407,
-        edam:topic_3419 ;
-    sc:citation <https://doi.org/10.5694/MJA2.50383>,
-        "pubmed:31679171" ;
-    sc:description """a highly personalised and measurement-based care model to manage youth mental health.
-
-Mood and psychotic syndromes most often emerge during adolescence and young adulthood, a period characterised by major physical and social change. Consequently, the effects of adolescent-onset mood and psychotic syndromes can have long term consequences. A key clinical challenge for youth mental health is to develop and test new systems that align with current evidence for comorbid presentations and underlying neurobiology, and are useful for predicting outcomes and guiding decisions regarding the provision of appropriate and effective care.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'adolescent-onset mood psychotic syndromes', 'PERSONALISED MEASUREMENT-BASED CARE YOUTH', 'MEASUREMENT-BASED CARE YOUTH MENTAL', 'adolescent-onset mood psychotic'""" ;
-    sc:featureList edam:operation_3435,
-        edam:operation_3436 ;
-    sc:name "PERSONALISED MEASUREMENT-BASED CARE YOUTH MENTAL" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31679171" .
-
 <https://bio.tools/PER_viewer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0623,
@@ -54854,7 +43897,7 @@ Mood and psychotic syndromes most often emerge during adolescence and young adul
         "Eduardo Pérez-Palma" .
 
 <https://bio.tools/PERs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0623,
         edam:topic_0634,
@@ -54871,7 +43914,7 @@ Mood and psychotic syndromes most often emerge during adolescence and young adul
     sc:url "https://github.com/edoper/PERs" .
 
 <https://bio.tools/PFOND> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Web service" ;
     sc:applicationSubCategory edam:topic_3063,
@@ -54891,46 +43934,46 @@ Mood and psychotic syndromes most often emerge during adolescence and young adul
 
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-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ],
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-            sc:sameAs "http://edamontology.org/data_2536" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:encodingFormat "http://edamontology.org/format_3681" ;
+            sc:name "Mass spectrometry data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -54953,7 +43996,7 @@ Mood and psychotic syndromes most often emerge during adolescence and young adul
     sc:url "https://github.com/PRIDE-Toolsuite/PGConverter" .
 
 <https://bio.tools/PGG_Han> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2885,
         edam:topic_3056,
@@ -54981,7 +44024,7 @@ Computational tools are implemented into the PGG.Han, and an online user interfa
     sc:url "http://www.pgghan.org" .
 
 <https://bio.tools/PGG_SNV> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0199,
         edam:topic_2815,
@@ -55001,7 +44044,7 @@ The tool provides useful web tools for figure illustration. Users can upload the
     sc:url "https://www.pggsnv.org" .
 
 <https://bio.tools/PGP-UK> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3173,
         edam:topic_3308,
@@ -55018,7 +44061,7 @@ The tool provides useful web tools for figure illustration. Users can upload the
     sc:url "http://opendata.lifebit.ai/table/pgp" .
 
 <https://bio.tools/PGP_tools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:description "Manipulation,filter and sort NGS data." ;
@@ -55026,13 +44069,13 @@ The tool provides useful web tools for figure illustration. Users can upload the
     sc:url "https://bioweb.pasteur.fr/packages/pack@PGP_tools@0.0.1" .
 
 <https://bio.tools/PGxLOD> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "PGxLOD is intended to host pharmacogenomic knowledge that the PractiKPharma project will extract from various sources such as the literature and Electronic Health Records." ;
     sc:name "PGxLOD" ;
     sc:url "https://pgxlod.loria.fr/" .
 
 <https://bio.tools/PGxMine> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0208,
         edam:topic_0218,
         edam:topic_3375,
@@ -55048,38 +44091,8 @@ The tool provides useful web tools for figure illustration. Users can upload the
     sc:name "PGxMine" ;
     sc:url "https://pgxmine.pharmgkb.org/" .
 
-<https://bio.tools/PHARMACOLOGY> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0154,
-        edam:topic_0202,
-        edam:topic_0820,
-        edam:topic_2830,
-        edam:topic_3303 ;
-    sc:citation <https://doi.org/10.1111/BPH.14747>,
-        <https://doi.org/10.1111/BPH.14748>,
-        <https://doi.org/10.1111/BPH.14749>,
-        "pmcid:PMC6844537",
-        "pmcid:PMC6844578",
-        "pmcid:PMC6844580",
-        "pubmed:31710715",
-        "pubmed:31710717",
-        "pubmed:31710719" ;
-    sc:description """THE CONCISE GUIDE TO PHARMACOLOGY 2019/20.
-
-IUPHAR/BPS Guide to PHARMACOLOGY.
-
-The IUPHAR/BPS Guide to PHARMACOLOGY. An expert-driven guide to pharmacological targets with quantitative information on the prescription medicines and experimental dugs that act on them. Developed as a joint initiative of the International Union of Basic and Clinical Pharmacology (IUPHAR) and the British Pharmacological Society (BPS) and is now the new home of the IUPHAR Database (IUPHAR-DB).
-
-||| COMMON LINK WITH (PUB. & NAME DIFFERENT) bio.tools/guidetopharmacology (GUIDETOPHARMACOLOGY.ORG), bio.tools/iuphar-db (GUIDETOPHARMACOLOGY.ORG).
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'Guide' (bio.tools/guide), 'Concise Guide PHARMACOLOGY 2019 20'""" ;
-    sc:featureList edam:operation_0269,
-        edam:operation_2995,
-        edam:operation_3799 ;
-    sc:name "PHARMACOLOGY" ;
-    sc:url "http://www.guidetopharmacology.org" .
-
 <https://bio.tools/PHAT> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_2885,
@@ -55100,10 +44113,10 @@ The IUPHAR/BPS Guide to PHARMACOLOGY. An expert-driven guide to pharmacological
 
 <https://bio.tools/PHENO> a sc:SoftwareApplication ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0920" ;
-            sc:name "Genotype/phenotype report" ;
-            sc:sameAs "http://edamontology.org/data_0920" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0920" ;
+            sc:encodingFormat "http://edamontology.org/format_3749" ;
+            sc:name "Genotype/phenotype report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API" ;
     sc:applicationSubCategory edam:topic_0625 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btz190> ;
@@ -55121,7 +44134,7 @@ Plant phenotyping is central to plant research and breeding and is becoming incr
     sc:url "https://brapi.biodata.pt" .
 
 <https://bio.tools/PHENOSTAMP> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0625,
         edam:topic_2259,
@@ -55138,7 +44151,7 @@ Plant phenotyping is central to plant research and breeding and is becoming incr
     sc:url "https://github.com/anchangben/PHENOSTAMP" .
 
 <https://bio.tools/PHG> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0625,
         edam:topic_2885,
@@ -55157,7 +44170,7 @@ Successful management and utilization of increasingly large genomic datasets are
     sc:url "https://bitbucket.org/bucklerlab/p_sorghumphg/src/master" .
 
 <https://bio.tools/PHI-Nets> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0621,
         edam:topic_0625,
@@ -55176,7 +44189,7 @@ Successful management and utilization of increasingly large genomic datasets are
     sc:url "https://github.com/PHI-base/phi-nets/" .
 
 <https://bio.tools/PHOSforUS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
         edam:topic_0160,
@@ -55192,7 +44205,7 @@ Successful management and utilization of increasingly large genomic datasets are
     sc:url "https://github.com/bxlab/PHOSforUS" .
 
 <https://bio.tools/PHYLOViZ> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0084 ;
@@ -55209,26 +44222,8 @@ Successful management and utilization of increasingly large genomic datasets are
         <https://phyloviz.readthedocs.io/en/latest/> ;
     sc:url "http://www.phyloviz.net/" .
 
-<https://bio.tools/PHoS> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0209,
-        edam:topic_2275,
-        edam:topic_3047,
-        edam:topic_3303,
-        edam:topic_3444 ;
-    sc:citation <https://doi.org/10.26434/CHEMRXIV.6969260.V2> ;
-    sc:description """Persistent Homology for Virtual Screening.
-
-<div> <div> <div> <p>Finding new medicines is one of the most important tasks of pharma- ceutical companies. One of the best approaches to finding a new drug starts with answering this simple question: Given a known effective drug X, what are the top 100 molecules in our database most similar to X. Thus the essence of the problem is a nearest-neighbors search, and the key question is how to define the distance between two molecules in the database. In this paper, we investigate the use of topological, rather than geometric, or chemical, signatures for molecules, and two notions of distance that come from comparing these topological signatures. We introduce PHoS (for Persistent Homology-based virtual Screening), a new system for ligand-based screening using a topological technique known as multi-parameter persistent homology.
-
-||| HOMEPAGE MISSING!""" ;
-    sc:featureList edam:operation_0337,
-        edam:operation_0482,
-        edam:operation_2421 ;
-    sc:name "PHoS" ;
-    sc:url "https://doi.org/10.26434/CHEMRXIV.6969260.V2" .
-
 <https://bio.tools/PICEAdatabase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0625,
         edam:topic_3308 ;
@@ -55240,37 +44235,8 @@ Successful management and utilization of increasingly large genomic datasets are
     sc:name "PICEAdatabase" ;
     sc:url "http://www.piceadb.com/" .
 
-<https://bio.tools/PICO> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3068,
-        edam:topic_3303,
-        edam:topic_3344 ;
-    sc:citation <https://doi.org/10.1177/1524839919893361>,
-        "pubmed:31874567" ;
-    sc:description """Using Evidence-Based Practice in Health Education.
-
-Search MEDLINE/PubMed via PICO with Spelling Checker.
-
-Patient, Intervention, Comparison, Outcome.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'Review PubMed PICO Tool'""" ;
-    sc:featureList edam:operation_0305 ;
-    sc:name "PICO" ;
-    sc:url "https://pubmedhh.nlm.nih.gov/nlmd/pico/piconew.php" .
-
-<https://bio.tools/PICORON-EBM> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0218,
-        edam:topic_3303 ;
-    sc:citation <https://doi.org/10.7287/PEERJ.PREPRINTS.27684V2>,
-        <https://doi.org/10.7287/PEERJ.PREPRINTS.27684V3> ;
-    sc:description """PICO and Risk Of bias Navigator for Evidence Based Medicine.
-
-Evidence-based medicine (EBM) involves determining treatment that matches the needs of each patient by integrating the best and latest available “scientific evidence” and “clinical skills”. Systematic review and meta-analysis refer to the process of searching databases and performing statistical analysis to integrate the results of multiple independent studies conducted in the past. The results obtained provide the highest quality evidence, which has become the foundation of various clinical guidelines. Systematic review and meta-analysis are conducted in the following sequence: 1) formulation of a hypothesis, 2) searching databases for articles, 3) selection of research articles, 4) evaluation of bias for each study, 5) integration of the results, 6) verification of bias, and 7) evaluation of the quality of the meta-analysis""" ;
-    sc:featureList edam:operation_2421 ;
-    sc:name "PICORON-EBM" ;
-    sc:url "http://www.picoron.com/" .
-
 <https://bio.tools/PIMENTo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0769,
@@ -55292,7 +44258,7 @@ Evidence-based medicine (EBM) involves determining treatment that matches the ne
     biotools:primaryContact "Thomas Nash" .
 
 <https://bio.tools/PINOT> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_3063,
@@ -55307,7 +44273,7 @@ Evidence-based medicine (EBM) involves determining treatment that matches the ne
     sc:url "http://www.reading.ac.uk/bioinf/PINOT/PINOT_form.html" .
 
 <https://bio.tools/PINSPlus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3295,
@@ -55327,7 +44293,7 @@ Evidence-based medicine (EBM) involves determining treatment that matches the ne
     biotools:primaryContact "Hung Nguyen" .
 
 <https://bio.tools/PIPE-T> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3308,
         edam:topic_3360,
         edam:topic_3518,
@@ -55348,7 +44314,7 @@ It is a tool that offers several state-of-the-art options for parsing, filtering
     sc:url "https://github.com/igg-molecular-biology-lab/pipe-t" .
 
 <https://bio.tools/PIPPA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0780 ;
@@ -55361,7 +44327,7 @@ It is a tool that offers several state-of-the-art options for parsing, filtering
     sc:url "https://pippa.psb.ugent.be/" .
 
 <https://bio.tools/PIPR> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_3474 ;
     sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTZ328>,
@@ -55375,7 +44341,7 @@ It is a tool that offers several state-of-the-art options for parsing, filtering
     sc:url "https://github.com/muhaochen/seq_ppi" .
 
 <https://bio.tools/PIRATE> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0114,
         edam:topic_0199,
         edam:topic_0623,
@@ -55393,7 +44359,7 @@ It is a tool that offers several state-of-the-art options for parsing, filtering
     sc:url "https://github.com/SionBayliss/PIRATE" .
 
 <https://bio.tools/PIRCh-seq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0659,
         edam:topic_3179,
@@ -55410,7 +44376,7 @@ It is a tool that offers several state-of-the-art options for parsing, filtering
     sc:url "https://github.com/QuKunLab/PIRCh" .
 
 <https://bio.tools/PIRD> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2830,
         edam:topic_3400 ;
@@ -55424,7 +44390,7 @@ It is a tool that offers several state-of-the-art options for parsing, filtering
     sc:url "https://db.cngb.org/pird" .
 
 <https://bio.tools/PIZSA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
@@ -55448,7 +44414,7 @@ It is a tool that offers several state-of-the-art options for parsing, filtering
     biotools:primaryContact "M. S. Madhusudhan" .
 
 <https://bio.tools/PK-DB> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2840,
         edam:topic_3375,
         edam:topic_3379 ;
@@ -55460,7 +44426,7 @@ It is a tool that offers several state-of-the-art options for parsing, filtering
     sc:url "https://pk-db.com" .
 
 <https://bio.tools/PLACNETw> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0102,
@@ -55480,50 +44446,8 @@ It is a tool that offers several state-of-the-art options for parsing, filtering
     sc:url "https://castillo.dicom.unican.es/upload/" ;
     biotools:primaryContact "Fernando de la Cruz" .
 
-<https://bio.tools/PLANET-SNP_pipeline> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0780,
-        edam:topic_2885,
-        edam:topic_3474 ;
-    sc:citation <https://doi.org/10.1016/J.YGENO.2018.07.001>,
-        "pubmed:31533899" ;
-    sc:description "> MEDIUM CONFIDENCE! | > HOMEPAGE BROKEN! | PLants based ANnotation and Establishment of True SNP pipeline | Acute prediction of SNPs (Single Nucleotide Polymorphisms) from high throughput sequencing data is a challenging problem, having potential to explore possible variation within plants species. For the extraction of profitable information from bulk of data, machine learning (ML) could lead to development of accurate model based on the learning of prior information. We performed state of art, in-depth learning on six different plant species. Comparative evaluation of five different algorithms showed that Random Forest substantially outperformed in selection of potential SNPs, with markedly improved prediction accuracy via 10-fold cross validation technique and integrated in system known as PLANET-SNP. We present the accurate method to extract the potential SNPs with user specific customizable parameters" ;
-    sc:featureList edam:operation_0484,
-        edam:operation_3661 ;
-    sc:name "PLANET-SNP pipeline" ;
-    sc:url "http://www.ncgd.nbri.res.in/PLANET-SNP-Pipeline.aspx" .
-
-<https://bio.tools/PLS> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3304,
-        edam:topic_3474 ;
-    sc:citation <https://doi.org/10.1088/1741-2552/AB5D47>,
-        "pubmed:31783374" ;
-    sc:description """an investigation of the effect of nonlinearity and sparsity on the decoding of intracranial data.
-
-OBJECTIVE:Partial Least Squares regression is a suitable linear decoder model for correlated and high dimensional neural data. This algorithm has been widely used in the application of brain-computer interface (BCI) for decoding of motor parameters. PLS does not consider nonlinear relations between brain signal features. The nonlinear version of PLS that considers a nonlinear relationship between the latent variables has not been proposed for the decoding of intracranial data. This nonlinear model may cause overfitting in some cases due to more number of free parameters. In this paper, we develop a new version of nonlinear PLS namely nonlinear sparse PLS (NLS PLS) and test it in the BCI applications.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'nonlinear PLS', 'nonlinear'""" ;
-    sc:featureList edam:operation_3435,
-        edam:operation_3659,
-        edam:operation_3891 ;
-    sc:name "PLS" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31783374" .
-
-<https://bio.tools/PLUMED_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0176,
-        edam:topic_0749,
-        edam:topic_3314 ;
-    sc:citation <https://doi.org/10.1038/S41592-019-0506-8>,
-        "pubmed:31363226" ;
-    sc:description "> LOW CONFIDENCE! | > NAME (PLUMED) SIMILAR TO (PUB. DIFFERENT) bio.tools/plumed (Plumed) | Promoting transparency and reproducibility in enhanced molecular simulations | The public repository of the PLUMED consortium | PLUMED-NEST is the public repository of the PLUMED consortium. It provides all the data needed to reproduce the results of a PLUMED-enhanced molecular dynamics simulation (or analysis) contained in a published paper. Furthermore, PLUMED-NEST monitors the compatibility of the provided PLUMED input files with the current and development versions of the code and integrates links from these files to the PLUMED manual | The community-developed PLUgin for MolEcular Dynamics | PLUMED is an open-source, community-developed library that provides a wide range of different methods, which include: | Home News People Download Doc Forum Cite NEST Funding" ;
-    sc:featureList edam:operation_0244,
-        edam:operation_2476 ;
-    sc:name "PLUMED_autogenerated" ;
-    sc:url "https://www.plumed-nest.org" .
-
 <https://bio.tools/PLUMED_nest> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0176,
         edam:topic_0749,
         edam:topic_3314 ;
@@ -55536,7 +44460,7 @@ OBJECTIVE:Partial Least Squares regression is a suitable linear decoder model fo
     sc:url "https://www.plumed-nest.org" .
 
 <https://bio.tools/PMBD> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0218,
         edam:topic_0821,
         edam:topic_3297,
@@ -55551,7 +44475,7 @@ OBJECTIVE:Partial Least Squares regression is a suitable linear decoder model fo
     sc:url "http://pmbd.genome-mining.cn/home" .
 
 <https://bio.tools/PMD-FDR> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
         edam:topic_0769,
@@ -55568,7 +44492,7 @@ OBJECTIVE:Partial Least Squares regression is a suitable linear decoder model fo
     sc:url "https://github.com/slhubler/PMD-FDR-for-paper" .
 
 <https://bio.tools/PMMLogit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2269,
         edam:topic_2830 ;
@@ -55579,7 +44503,7 @@ OBJECTIVE:Partial Least Squares regression is a suitable linear decoder model fo
     sc:url "https://github.com/v-panchal/PMML" .
 
 <https://bio.tools/PN-BOTTM> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0605,
         edam:topic_2640,
@@ -55599,7 +44523,7 @@ OBJECTIVE:Partial Least Squares regression is a suitable linear decoder model fo
     biotools:primaryContact "Mandi Pratt-Chapman" .
 
 <https://bio.tools/PNC> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0203,
         edam:topic_0625,
@@ -55618,7 +44542,7 @@ OBJECTIVE:Partial Least Squares regression is a suitable linear decoder model fo
     sc:url "https://github.com/NWPU-903PR/PNC" .
 
 <https://bio.tools/PNV> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3050,
         edam:topic_3306,
@@ -55633,7 +44557,7 @@ OBJECTIVE:Partial Least Squares regression is a suitable linear decoder model fo
     sc:url "https://github.com/envirometrix/PNVmaps" .
 
 <https://bio.tools/PORGY> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3292,
@@ -55656,7 +44580,7 @@ OBJECTIVE:Partial Least Squares regression is a suitable linear decoder model fo
         "Guy Melancon" .
 
 <https://bio.tools/PPCheck> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0130,
         edam:topic_2275 ;
@@ -55670,7 +44594,7 @@ OBJECTIVE:Partial Least Squares regression is a suitable linear decoder model fo
     sc:url "http://caps.ncbs.res.in/ppcheck/" .
 
 <https://bio.tools/PPHAGE> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0114,
         edam:topic_0602,
         edam:topic_2640,
@@ -55687,7 +44611,7 @@ OBJECTIVE:Partial Least Squares regression is a suitable linear decoder model fo
     sc:url "https://cbb.ut.ac.ir/pphage" .
 
 <https://bio.tools/PPICurator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0128,
@@ -55707,27 +44631,8 @@ OBJECTIVE:Partial Least Squares regression is a suitable linear decoder model fo
     sc:softwareHelp <https://ppicurator.hupo.org.cn/help> ;
     sc:url "https://ppicurator.hupo.org.cn/" .
 
-<https://bio.tools/PPI_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0128,
-        edam:topic_0154,
-        edam:topic_0202,
-        edam:topic_2830,
-        edam:topic_3047 ;
-    sc:citation <https://doi.org/10.1021/ACS.JMEDCHEM.9B01184>,
-        "pubmed:31603323" ;
-    sc:description """Exhaustive Repertoire of Druggable Cavities at Protein-Protein Interfaces of Known Three-Dimensional Structure.
-
-Protein-protein interactions (PPIs) offer the unique opportunity to tailor ligands aimed at specifically stabilizing or disrupting the corresponding interfaces and providing a safer alternative to conventional ligands targeting monomeric macromolecules. Selecting biologically relevant protein-protein interfaces for either stabilization or disruption by small molecules is usually biology-driven on a case-by-case basis and does not follow a structural rationale that could be applied to an entire interactome. We herewith provide a first step to the latter goal by using a fully automated and structure-based workflow, applicable to any PPI of known three-dimensional (3D) structure, to identify and prioritize druggable cavities at and nearby PPIs of pharmacological interest.
-
-||| NAME EQUAL TO (PUB. DIFFERENT) bio.tools/ppi""" ;
-    sc:featureList edam:operation_0478,
-        edam:operation_2950,
-        edam:operation_3351 ;
-    sc:name "PPI_autogenerated" ;
-    sc:url "http://drugdesign.unistra.fr/ppiome" .
-
 <https://bio.tools/PPNID> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0769,
         edam:topic_3810 ;
@@ -55740,7 +44645,7 @@ Protein-protein interactions (PPIs) offer the unique opportunity to tailor ligan
     sc:url "https://github.com/xueqing4083/PPNID" .
 
 <https://bio.tools/PPP> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0769,
         edam:topic_3796 ;
@@ -55756,7 +44661,7 @@ Free document hosting provided by Read the Docs""" ;
     sc:url "https://ppp.readthedocs.io/en/latest/PPP_pages/install.html" .
 
 <https://bio.tools/PPR-SSM> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0218,
         edam:topic_0625,
@@ -55776,7 +44681,7 @@ BACKGROUND:Biomedical literature concerns a wide range of concepts, requiring co
     sc:url "https://github.com/lasigeBioTM/PPRSSM" .
 
 <https://bio.tools/PPSBoost> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0601,
         edam:topic_3474 ;
@@ -55788,7 +44693,7 @@ BACKGROUND:Biomedical literature concerns a wide range of concepts, requiring co
     sc:url "http://cse.iitkgp.ac.in/~pralay/resources/PPSBoost/" .
 
 <https://bio.tools/PPV_NPV> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3305,
@@ -55809,7 +44714,7 @@ BACKGROUND:Biomedical literature concerns a wide range of concepts, requiring co
     biotools:primaryContact <https://orcid.org/0000-0002-8734-7335> .
 
 <https://bio.tools/PPanGGOLiN> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0621,
         edam:topic_0623,
@@ -55825,7 +44730,7 @@ BACKGROUND:Biomedical literature concerns a wide range of concepts, requiring co
     sc:url "https://github.com/labgem/PPanGGOLiN" .
 
 <https://bio.tools/PQStat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_2269,
         edam:topic_3305 ;
@@ -55840,18 +44745,18 @@ BACKGROUND:Biomedical literature concerns a wide range of concepts, requiring co
 
 <https://bio.tools/PRALINE_2> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2886" ;
-            sc:name "Protein sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2886" ],
+            sc:additionalType "http://edamontology.org/data_2887" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Nucleic acid sequence record" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2887" ;
-            sc:name "Nucleic acid sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2887" ] ;
+            sc:additionalType "http://edamontology.org/data_2886" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0868" ;
-            sc:name "Profile-profile alignment" ;
-            sc:sameAs "http://edamontology.org/data_0868" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0868" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Profile-profile alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0080 ;
@@ -55869,7 +44774,7 @@ BACKGROUND:Biomedical literature concerns a wide range of concepts, requiring co
     biotools:primaryContact "Centre for Integrative Bioinformatics VU (IBIVU), Vrije Universiteit" .
 
 <https://bio.tools/PRAM> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3170,
@@ -55891,7 +44796,7 @@ BACKGROUND:Biomedical literature concerns a wide range of concepts, requiring co
     biotools:primaryContact "Peng Liu" .
 
 <https://bio.tools/PRAS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3512,
         edam:topic_3794 ;
@@ -55905,30 +44810,16 @@ BACKGROUND:Biomedical literature concerns a wide range of concepts, requiring co
     sc:name "PRAS" ;
     sc:url "https://github.com/ouyang-lab/PRAS" .
 
-<https://bio.tools/PRECISE_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3360,
-        edam:topic_3379,
-        edam:topic_3577 ;
-    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTZ372>,
-        "pmcid:PMC6612899",
-        "pubmed:31510654" ;
-    sc:description "> NAME (PRECISE) SIMILAR TO (PUB. DIFFERENT) bio.tools/precise (Precise) | > CORRECT NAME OF TOOL COULD ALSO BE 'IMPLEMENTATION:PRECISE' | a domain adaptation approach to transfer predictors of drug response from pre-clinical models to tumors | Example of usage of PRECISE is available at this address: https://github.com/NKI-CCB/PRECISE_figures Examples correspond to scripts used for creating figures" ;
-    sc:featureList edam:operation_2436,
-        edam:operation_3891 ;
-    sc:license "MIT" ;
-    sc:name "PRECISE_autogenerated" ;
-    sc:url "https://github.com/NKI-CCB/PRECISE" .
-
 <https://bio.tools/PRECOG_Predicting_coupling_probabilities_of_G-protein_coupled_receptors> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0968" ;
-            sc:name "Keyword" ;
-            sc:sameAs "http://edamontology.org/data_0968" ] ;
+            sc:additionalType "http://edamontology.org/data_0968" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Keyword" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2526" ;
-            sc:name "Text data" ;
-            sc:sameAs "http://edamontology.org/data_2526" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2526" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Text data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3307 ;
     sc:citation <https://doi.org/10.1093/nar/gkz392>,
@@ -55944,41 +44835,8 @@ BACKGROUND:Biomedical literature concerns a wide range of concepts, requiring co
     sc:softwareVersion "1.1" ;
     sc:url "http://precog.russelllab.org" .
 
-<https://bio.tools/PRIA> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3168,
-        edam:topic_3295,
-        edam:topic_3519 ;
-    sc:citation <https://doi.org/10.1093/NAR/GKZ704>,
-        "pmcid:PMC6821303",
-        "pubmed:31418020" ;
-    sc:description "> MEDIUM CONFIDENCE! | > HOMEPAGE MISSING! | > CORRECT NAME OF TOOL COULD ALSO BE 'Polymerization Retardation Isothermal Amplification', '5hmC', '5hmC 5fC', '5fC' | a strategy enables sensitively quantify genome-wide 5-methylcytosine oxides rapidly on handy instruments with nanoscale sample input | The current methods for quantifying genome-wide 5-methylcytosine (5mC) oxides are still scarce, mostly restricted with two limitations: assay sensitivity is seriously compromised with cost, assay time and sample input; epigenetic information is irreproducible during polymerase chain reaction (PCR) amplification without bisulfite pretreatment. Here, we propose a novel Polymerization Retardation Isothermal Amplification (PRIA) strategy to directly amplify the minute differences between epigenetic bases and others by arranging DNA polymerase to repetitively pass large electron-withdrawing groups tagged 5mC-oxides" ;
-    sc:featureList edam:operation_0308,
-        edam:operation_3186 ;
-    sc:name "PRIA" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31418020" .
-
-<https://bio.tools/PRIDE_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0080,
-        edam:topic_0121,
-        edam:topic_0154,
-        edam:topic_2815,
-        edam:topic_3520 ;
-    sc:citation <https://doi.org/10.1101/867762> ;
-    sc:description """Proteomics identifies signal peptide features determining the substrate specificity in human Sec62/Sec63-dependent ER protein import.
-
-Proteomics Identification Database.
-
-||| NAME EQUAL TO (PUB. DIFFERENT) bio.tools/pride.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'partner repository dataset', 'Proteomics identifies', '6s5hn73jcv 1', 'Sec62 Sec63-complex'""" ;
-    sc:featureList edam:operation_0418,
-        edam:operation_3431,
-        edam:operation_3630 ;
-    sc:name "PRIDE_autogenerated" ;
-    sc:url "http://www.ebi.ac.uk/pride/archive/projects/Identifiers" .
-
 <https://bio.tools/PRIGSA2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0157,
         edam:topic_0623,
         edam:topic_0749,
@@ -55998,26 +44856,8 @@ PRIGSA2 is a graph based algorithm which implements knowledge-based and de novo
     sc:name "PRIGSA2" ;
     sc:url "http://bioinf.iiit.ac.in/PRIGSA2/" .
 
-<https://bio.tools/PRIME-Tool> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0605,
-        edam:topic_3068,
-        edam:topic_3420 ;
-    sc:citation <https://doi.org/10.1186/S12913-019-4768-8>,
-        "pmcid:PMC6896786",
-        "pubmed:31805931" ;
-    sc:description """Preliminary validation of the PRImary care facility Management Evaluation tool (PRIME-Tool).
-
-BACKGROUND:The management quality of healthcare facilities has consistently been linked to facility performance, but available tools to measure management are costly to implement, often hospital-specific, not designed for low- and middle-income countries (LMICs), nor widely deployed. We addressed this gap by developing the PRImary care facility Management Evaluation Tool (PRIME-Tool), a primary health care facility management survey for integration into routine national surveys in LMICs. We present an analysis of the tool's psychometric properties and suggest directions for future improvements. METHODS:The PRIME-Tool assesses performance in five core management domains: Target setting, Operations, Human resources, Monitoring, and Community engagement. We evaluated two versions of the PRIME-Tool.
-
-||| HOMEPAGE MISSING!""" ;
-    sc:featureList edam:operation_2428,
-        edam:operation_3359,
-        edam:operation_3760 ;
-    sc:name "PRIME-Tool" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31805931" .
-
 <https://bio.tools/PRIMEval> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0632,
         edam:topic_3518,
@@ -56035,7 +44875,7 @@ BACKGROUND:The management quality of healthcare facilities has consistently been
     sc:url "https://primeval.ait.ac.at" .
 
 <https://bio.tools/PRINCESS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3263,
         edam:topic_3325 ;
@@ -56053,7 +44893,7 @@ BACKGROUND:The management quality of healthcare facilities has consistently been
     biotools:primaryContact "Feng Chen" .
 
 <https://bio.tools/PRISM-methylation> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3295,
         edam:topic_3674 ;
@@ -56068,83 +44908,8 @@ BACKGROUND:The management quality of healthcare facilities has consistently been
     sc:name "PRISM" ;
     sc:url "https://github.com/dohlee/prism" .
 
-<https://bio.tools/PRISM_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0654,
-        edam:topic_3295,
-        edam:topic_3674 ;
-    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTZ327>,
-        "pmcid:PMC6612819",
-        "pubmed:31510697" ;
-    sc:description "> NAME EQUAL TO (PUB. DIFFERENT) bio.tools/prism-ppi | > NAME (PRISM) SIMILAR TO (PUB. DIFFERENT) bio.tools/prism_3 (PRISM 3), bio.tools/prism-primer (PriSM), bio.tools/prism (PrISM) | methylation pattern-based, reference-free inference of subclonal makeup | Methylation Pattern-based, Reference-free Inference of Subclonal Makeup. (v1.0.1) | PRISM requires the mapping result of Bismark, a bisulfite read mapping tool. Also note that PRISM only applies to RRBS data, and unfortunately, the feasibility of PRISM to the data from other methylation profiling techniques such as whole genome bisulfite sequencing (WGBS), methylated DNA immunoprecipitation sequencing (MeDIP-Seq), or methyl-CpG binding domain-based capture sequencing (MBDCap-Seq) has not been verified | BAM file of RRBS reads, aligned by Bismark" ;
-    sc:featureList edam:operation_3186,
-        edam:operation_3206,
-        edam:operation_3629 ;
-    sc:license "MIT" ;
-    sc:name "PRISM_autogenerated" ;
-    sc:url "https://github.com/dohlee/prism" .
-
-<https://bio.tools/PRJNA315192> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3068,
-        edam:topic_3174,
-        edam:topic_3277,
-        edam:topic_3305,
-        edam:topic_3673 ;
-    sc:citation <https://doi.org/10.1101/843987> ;
-    sc:description """Comparison of Shiga toxin-encoding bacteriophages in highly pathogenic strains of Shiga toxin-producing Escherichia coli O157:H7 in the UK.
-
-A BioProject is a collection of biological data related to a single initiative, originating from a single organization or from a consortium. A BioProject record provides users a single place to find links to the diverse data types generated for that project.
-
-Accession: PRJNA315192 ID: 315192.
-
-||| NAME (PRJNA315192) SIMILAR TO (PUB. DIFFERENT) bio.tools/PRJNA562212 (PRJNA562212).
-
-||| COMMON LINK WITH (PUB. & NAME DIFFERENT) bio.tools/bioproject (NLM.NIH.GOV/bioproject).
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'stx2a -encoding prophage', 'sub-lineages STEC O157:H7', 'indigenous sub-lineages STEC O157:H7', 'STEC O157:H7'""" ;
-    sc:featureList edam:operation_0310,
-        edam:operation_3431 ;
-    sc:name "PRJNA315192" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/bioproject/?term=PRJNA315192" .
-
-<https://bio.tools/PRJNA421075> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0659,
-        edam:topic_3170,
-        edam:topic_3308,
-        edam:topic_3324,
-        edam:topic_3512 ;
-    sc:citation <https://doi.org/10.1111/FEBS.15114>,
-        "pubmed:31663680" ;
-    sc:description """Bovine milk transcriptome analysis reveals microRNAs and RNU2 involved in mastitis.
-
-A BioProject is a collection of biological data related to a single initiative, originating from a single organization or from a consortium. A BioProject record provides users a single place to find links to the diverse data types generated for that project.
-
-Accession: PRJNA421075 ID: 421075.
-
-||| NAME (PRJNA421075) SIMILAR TO (PUB. DIFFERENT) bio.tools/PRJNA562212 (PRJNA562212).
-
-||| COMMON LINK WITH (PUB. & NAME DIFFERENT) bio.tools/bioproject (NLM.NIH.GOV/bioproject).
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'bovine mastitis', 'mastitis', 'miR-1246', 'RNU2'""" ;
-    sc:featureList edam:operation_0463,
-        edam:operation_3435,
-        edam:operation_3792 ;
-    sc:name "PRJNA421075" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/bioproject/PRJNA421075" .
-
-<https://bio.tools/PRJNA562212> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0199,
-        edam:topic_0203,
-        edam:topic_3170 ;
-    sc:citation <https://doi.org/10.1111/TPJ.14523>,
-        "pubmed:31487093" ;
-    sc:description "> MEDIUM CONFIDENCE! | > COMMON LINK WITH (PUB. & NAME DIFFERENT) bio.tools/bioproject (NLM.NIH.GOV/bioproject) | > CORRECT NAME OF TOOL COULD ALSO BE 'Sequence Read', 'Sequence Read Archive' | Genetic variation and temperature affects hybrid barriers during interspecific hybridization | Arabidopsis thaliana (ID 562212) | A BioProject is a collection of biological data related to a single initiative, originating from a single organization or from a consortium. A BioProject record provides users a single place to find links to the diverse data types generated for that project | Accession: PRJNA562212 ID: 562212" ;
-    sc:featureList edam:operation_3197,
-        edam:operation_3431 ;
-    sc:name "PRJNA562212" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/bioproject/?term=PRJNA562212" .
-
 <https://bio.tools/PRODIGY-LIG> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application",
         "Web service" ;
@@ -56174,7 +44939,7 @@ Accession: PRJNA421075 ID: 421075.
     sc:url "http://milou.science.uu.nl/services/PRODIGY-LIG" .
 
 <https://bio.tools/PRODIGY-crystal> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0128,
@@ -56196,7 +44961,7 @@ Accession: PRJNA421075 ID: 421075.
         "Anna Vangone" .
 
 <https://bio.tools/PROMO> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_2640,
@@ -56217,7 +44982,7 @@ Accession: PRJNA421075 ID: 421075.
         "Ron Shamir" .
 
 <https://bio.tools/PRP> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0659,
         edam:topic_0749,
@@ -56237,7 +45002,7 @@ Gene regulation is a highly complex and networked phenomenon where multiple tier
     sc:url "https://scbb.ihbt.res.in/PRP" .
 
 <https://bio.tools/PRRpred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2830,
         edam:topic_3400,
         edam:topic_3473,
@@ -56255,7 +45020,7 @@ PRRpred is a web server designed for predicting pattern Recognition Receptors (P
     sc:url "http://webs.iiitd.edu.in/raghava/prrpred/" .
 
 <https://bio.tools/PRS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3298,
         edam:topic_3416,
@@ -56277,7 +45042,7 @@ PRRpred is a web server designed for predicting pattern Recognition Receptors (P
     biotools:primaryContact <https://orcid.org/0000-0002-7918-2040> .
 
 <https://bio.tools/PS-Plant> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0780,
         edam:topic_3382,
@@ -56298,7 +45063,7 @@ PRRpred is a web server designed for predicting pattern Recognition Receptors (P
     biotools:primaryContact <https://orcid.org/0000-0002-7255-872X> .
 
 <https://bio.tools/PSCP> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_2814,
@@ -56317,23 +45082,8 @@ PRRpred is a web server designed for predicting pattern Recognition Receptors (P
     sc:url "http://brl.uiu.ac.bd/PL/" ;
     biotools:primaryContact "Swakkhar Shatabda​" .
 
-<https://bio.tools/PSI-SMALP> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0593,
-        edam:topic_0602 ;
-    sc:citation <https://doi.org/10.1016/J.BPJ.2019.11.3391>,
-        "pubmed:31882247" ;
-    sc:description """Detergent-free Cyanobacterial Photosystem I, Reveals Faster Femtosecond Photochemistry.
-
-Cyanobacterial photosystem I (PSI) functions as a light-driven cyt c6-ferredoxin oxidoreductase located in the thylakoid membrane. In this work, the energy and charge transfer processes in PSI complexes isolated from Thermosynechococcus elongatus via conventional n-dodecyl-β-D-maltoside solubilization (DM-PSI) and a, to our knowledge, new detergent-free method using styrene-maleic acid copolymers (SMA-PSI) have been investigated by pump-to-probe femtosecond laser spectroscopy. In DM-PSI preparations excited at 740 nm, the excitation remained localized on the long-wavelength chlorophyll forms within 0.1-20 ps and revealed little or no charge separation and oxidation of the special pair, P700.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'SMA-PSI', 'DM-PSI', 'P700', 'detergent-free SMA-PSI'""" ;
-    sc:name "PSI-SMALP" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31882247" .
-
 <https://bio.tools/PSI-Sigma> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3320,
@@ -56355,7 +45105,7 @@ Cyanobacterial photosystem I (PSI) functions as a light-driven cyt c6-ferredoxin
     biotools:primaryContact "Kuan-Ting Lin" .
 
 <https://bio.tools/PSI-genome> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_3168 ;
     sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTZ341>,
@@ -56369,22 +45119,8 @@ Cyanobacterial photosystem I (PSI) functions as a light-driven cyt c6-ferredoxin
     sc:name "PSI" ;
     sc:url "https://github.com/cartoonist/psi" .
 
-<https://bio.tools/PSI_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0199,
-        edam:topic_3168 ;
-    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTZ341>,
-        "pmcid:PMC6612829",
-        "pubmed:31510650" ;
-    sc:description "> LOW CONFIDENCE! | > NAME EQUAL TO (PUB. DIFFERENT) bio.tools/psi | > CORRECT NAME OF TOOL COULD ALSO BE 'cartoonist', 'MOTIVATION:Sequence', 'fully-sensitive', 'IMPLEMENTATION:The' | Fully-sensitive seed finding in sequence graphs using a hybrid index | Graph REad Mapper (C++ implementation) | Google protocol buffer >= v3.0.0" ;
-    sc:featureList edam:operation_0249,
-        edam:operation_0524,
-        edam:operation_3211 ;
-    sc:license "MIT" ;
-    sc:name "PSI_autogenerated" ;
-    sc:url "https://github.com/cartoonist/psi" .
-
 <https://bio.tools/PSMD> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0632,
         edam:topic_2640,
         edam:topic_2885,
@@ -56409,14 +45145,14 @@ Microsatellites (simple repeat sequences, SSRs or short tandem repeats, STRs), a
 
 <https://bio.tools/PSPer> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2974" ;
-            sc:name "Protein sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_2974" ] ;
+            sc:additionalType "http://edamontology.org/data_2974" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence (raw)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:encodingFormat "http://edamontology.org/format_3464" ;
+            sc:name "Protein features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btz274> ;
     sc:description "Prediction of FUS-like phase separation proteins" ;
     sc:featureList edam:operation_3092 ;
@@ -56425,7 +45161,7 @@ Microsatellites (simple repeat sequences, SSRs or short tandem repeats, STRs), a
     biotools:primaryContact <https://orcid.org/0000-0001-7470-4324> .
 
 <https://bio.tools/PSRN> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0659,
@@ -56449,7 +45185,7 @@ Microsatellites (simple repeat sequences, SSRs or short tandem repeats, STRs), a
     biotools:primaryContact "Systems Biology Lab, National Chung Hsing University" .
 
 <https://bio.tools/PSSRdt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2885,
         edam:topic_3170,
@@ -56467,20 +45203,8 @@ Microsatellites (simple repeat sequences, SSRs or short tandem repeats, STRs), a
     sc:name "PSSRdt" ;
     sc:url "https://github.com/PSSRdt/program" .
 
-<https://bio.tools/PSS_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0108,
-        edam:topic_0736,
-        edam:topic_0820 ;
-    sc:citation <https://doi.org/10.1101/724658> ;
-    sc:description "> NAME EQUAL TO (PUB. DIFFERENT) bio.tools/pss | An enabling QTY server for designing water-soluble α-helical transmembrane proteins | Although the QTY/NTY code-based design is relative straightforward, the design job is still time-consuming if only a manual manner is available, especially for library design, which will be impractical without computing power. Here a web-based PSS sever was developed for facilitating the protein design based on the QTY/NTY code. This server is expected to be used widely by scientists who are endeavoring in the research about alpha-helical proteins | QTY/NTY Design for Protein Solubilizing | Membrane proteins play vital roles in all living systems" ;
-    sc:featureList edam:operation_0269,
-        edam:operation_2241,
-        edam:operation_2485 ;
-    sc:name "PSS_autogenerated" ;
-    sc:url "http://pss.sjtu.edu.cn" .
-
 <https://bio.tools/PTM-CrossTalkMapper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0203,
         edam:topic_0601,
@@ -56500,7 +45224,7 @@ PTM-CrossTalkMapper is a flexible toolkit to visualize multi-layered quantitativ
     sc:url "https://github.com/veitveit/CrossTalkMapper" .
 
 <https://bio.tools/PTMphinder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0601,
@@ -56522,33 +45246,8 @@ PTM-CrossTalkMapper is a flexible toolkit to visualize multi-layered quantitativ
     sc:url "https://github.com/jmwozniak/PTMphinder" ;
     biotools:primaryContact "Jacob M. Wozniak" .
 
-<https://bio.tools/PTO-QuickStep> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3168,
-        edam:topic_3341,
-        edam:topic_3895 ;
-    sc:citation <https://doi.org/10.3390/IJMS20163908>,
-        "pmcid:PMC6720219",
-        "pubmed:31405219" ;
-    sc:description "> MEDIUM CONFIDENCE! | > HOMEPAGE MISSING! | A Fast and Efficient Method for Cloning Random Mutagenesis Libraries | QuickStep is a cloning method that allows seamless point integration of a DNA sequence at any position within a target plasmid using only Q5 High-Fidelity DNA Polymerase and DpnI endonuclease. This efficient and cost-effective method consists of two steps: two parallel asymmetric PCRs, followed by a megaprimer-based whole-plasmid amplification. To further simplify the workflow, enhance the efficiency, and increase the uptake of QuickStep, we replaced the asymmetric PCRs with a conventional PCR that uses phosphorothioate (PTO) oligos to generate megaprimers with 3' overhangs. The ease and speed of PTO-QuickStep were demonstrated through (1) right-first-time cloning of a 1.8 kb gene fragment into a pET vector and (2) creating a random mutagenesis library for directed evolution" ;
-    sc:featureList edam:operation_0308,
-        edam:operation_3237 ;
-    sc:name "PTO-QuickStep" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31405219" .
-
-<https://bio.tools/PTPD> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0121,
-        edam:topic_0154,
-        edam:topic_3474 ;
-    sc:citation <https://doi.org/10.1186/S12859-019-3006-Z>,
-        "pmcid:PMC6728961",
-        "pubmed:31492094" ;
-    sc:description "> MEDIUM CONFIDENCE! | > HOMEPAGE MISSING! | predicting therapeutic peptides by deep learning and word2vec | *: Background In the search for therapeutic peptides for disease treatments, many efforts have been made to identify various functional peptides from large numbers of peptide sequence databases. In this paper, we propose an effective computational model that uses deep learning and word2vec to predict therapeutic peptides (PTPD). *: Results Representation vectors of all k-mers were obtained through word2vec based on k-mer co-existence information. The original peptide sequences were then divided into k-mers using the windowing method. The peptide sequences were mapped to the input layer by the embedding vector obtained by word2vec. Three types of filters in the convolutional layers, as well as dropout and max-pooling operations, were applied to construct feature maps" ;
-    sc:featureList edam:operation_3646 ;
-    sc:name "PTPD" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31492094" .
-
 <https://bio.tools/PTR> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
         edam:topic_0203,
@@ -56561,7 +45260,7 @@ PTM-CrossTalkMapper is a flexible toolkit to visualize multi-layered quantitativ
     sc:url "https://github.com/arunima2/PTRE_PSB_2020" .
 
 <https://bio.tools/PTRBC> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3403,
         edam:topic_3421,
         edam:topic_3474 ;
@@ -56574,30 +45273,8 @@ This clinical data analysis tool can be used to do data cleaning and predict the
     sc:name "PTRBC" ;
     sc:url "https://github.com/niu-lab/PTRBC" .
 
-<https://bio.tools/PTS_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0121,
-        edam:topic_0140,
-        edam:topic_0154,
-        edam:topic_0621,
-        edam:topic_3336 ;
-    sc:citation <https://doi.org/10.1093/DATABASE/BAX095>,
-        "pmcid:PMC5750839",
-        "pubmed:31725865" ;
-    sc:description """a pharmaceutical target seeker.
-
-Identifying protein targets for a bioactive compound is critical in drug discovery. Molecular similarity is a main approach to fish drug targets, and is based upon an axiom that similar compounds may have the same targets. The molecular structural similarity of a compound and the ligand of a known target can be gauged in topological (2D), steric (3D) or static (pharmacophoric) metric. The topologic metric is fast, but unable to represent steric and static profile of a bioactive compound. Steric and static metrics reflect the shape properties of a compound if its structure were experimentally obtained, and could be unreliable if they were based upon the putative conformation data.
-
-||| HOMEPAGE BROKEN!.
-
-||| NAME EQUAL TO (PUB. DIFFERENT) bio.tools/pts""" ;
-    sc:featureList edam:operation_0337,
-        edam:operation_0478,
-        edam:operation_2421 ;
-    sc:name "PTS_autogenerated" ;
-    sc:url "http://www.rcdd.org.cn/PTS" .
-
 <https://bio.tools/PTWAS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2269,
         edam:topic_3170,
@@ -56618,7 +45295,7 @@ This repository contains the software implementations and necessary annotation r
     sc:url "https://github.com/xqwen/ptwas/" .
 
 <https://bio.tools/PUG-View> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2840,
         edam:topic_3314 ;
@@ -56633,7 +45310,7 @@ This repository contains the software implementations and necessary annotation r
     sc:url "https://pubchemdocs.ncbi.nlm.nih.gov/pug-view" .
 
 <https://bio.tools/PVCTools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0780,
         edam:topic_2259,
@@ -56651,7 +45328,7 @@ PVCTools is Parallel Variation Calling Tools, which tries to call variation usin
     sc:url "https://github.com/CNaibon/PVCTools" .
 
 <https://bio.tools/PXS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3063,
         edam:topic_3337,
@@ -56666,7 +45343,7 @@ ABSTRACT While polygenic risk scores (PRSs) have been shown to identify a small
     sc:url "http://apps.chiragjpgroup.org/pxs/" .
 
 <https://bio.tools/PYLFIRE> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_2269,
         edam:topic_3056 ;
@@ -56685,7 +45362,7 @@ PYLFIRE requires Python 3.6 or greater and a Fortran compiler, for Mac users bre
     sc:url "https://github.com/elfi-dev/zoo/tree/master/pylfire" .
 
 <https://bio.tools/PYRO-NN> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3384,
         edam:topic_3452,
         edam:topic_3474 ;
@@ -56700,7 +45377,7 @@ PYLFIRE requires Python 3.6 or greater and a Fortran compiler, for Mac users bre
     sc:url "https://github.com/csyben/PYRO-NN" .
 
 <https://bio.tools/PaCBAM> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0199,
@@ -56718,19 +45395,8 @@ PaCBAM_Performance_analysis – Google Drev""" ;
     sc:name "PaCBAM" ;
     sc:url "http://bcglab.cibio.unitn.it/PaCBAM" .
 
-<https://bio.tools/PaCIR> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0749,
-        edam:topic_3376,
-        edam:topic_3403 ;
-    sc:citation <https://doi.org/10.1016/J.JAPH.2019.07.008>,
-        "pubmed:31400991" ;
-    sc:description "> MEDIUM CONFIDENCE! | > HOMEPAGE MISSING! | > CORRECT NAME OF TOOL COULD ALSO BE 'pharmacist' | A tool to enhance pharmacist patient care intervention reporting | OBJECTIVES:To develop a pharmacist patient care services intervention reporting checklist to be used in conjunction with existing primary reporting tools. The tool should enhance consistent reporting of pharmacist patient care interventions. Tool use in pharmacist-patient care intervention reporting may increase: (1) likelihood for inclusion in higher order analyses and (2) successful replication. METHODS:Adhering to principles of the Equator Network, a modified Delphi approach was used. An expert group identified guidance need, conducted a thorough literature search confirming need, developed a comprehensive list of potential elements, refined the list via multiple rounds, finalized language and structure, and published the checklist" ;
-    sc:featureList edam:operation_3891 ;
-    sc:name "PaCIR" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31400991" .
-
 <https://bio.tools/PaSGAL> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2885,
         edam:topic_3315,
@@ -56752,7 +45418,7 @@ PaCBAM_Performance_analysis – Google Drev""" ;
         "Srinivas Aluru" .
 
 <https://bio.tools/PaWFE> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3318,
         edam:topic_3474 ;
     sc:citation <https://doi.org/10.3389/FNBOT.2019.00074>,
@@ -56763,7 +45429,7 @@ PaCBAM_Performance_analysis – Google Drev""" ;
     sc:url "http://ninapro.hevs.ch/node/229" .
 
 <https://bio.tools/PacBio_Sequencing_Simulator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0749,
@@ -56782,13 +45448,15 @@ PaCBAM_Performance_analysis – Google Drev""" ;
     biotools:primaryContact "Wenmin Zhang" .
 
 <https://bio.tools/PanGeneHome> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
-    sc:description "PanGeneHome is designed to facilitate pangenome analysis for all sequenced prokaryotes at any taxonomical level." ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:citation <https://doi.org/10.48550/arXiv.1805.05597> ;
+    sc:description "PanGeneHome is a web server dedicated to the analysis of available microbial pangenomes. Several standalone tools (e.g. PGAP, PANNOTATOR, PanGP, Roary and BPGA) and web servers (e.g. Panseq, PGAT and PanWeb) dedicated to pangenome analysis have been developed recently and offer the possibility to compute pangenome analysis for genomes provided by a user. For all these tools and servers, users have to collect genomes and manage to run the tools, which implies a significant effort on the user side. To tackle this problem, we developped PanGeneHome, the only web site offering pre-computed pangenome analysis with up-to-date and large scale data. PanGeneHome provides an easy way to get a glimpse on the pangenome of a microbial group of interest, the analysis being precomputed and available for 615 taxa, covering 182 species and 49 orders. Considering the fast growing number of microbial genomes, the PanGeneHome tool will need to be updated regularly." ;
     sc:name "PanGeneHome" ;
+    sc:softwareHelp <http://pangenehome.lmge.uca.fr/> ;
     sc:url "http://pangenehome.lmge.uca.fr/" .
 
 <https://bio.tools/PanTools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0102,
@@ -56805,7 +45473,7 @@ PaCBAM_Performance_analysis – Google Drev""" ;
     sc:url "https://git.wur.nl/bioinformatics/pantools" .
 
 <https://bio.tools/Pandoc_Scholar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3068,
         edam:topic_3292,
@@ -56836,7 +45504,7 @@ If you need to convert files from one markup format into another, pandoc is your
     sc:url "https://github.com/pandoc-scholar" .
 
 <https://bio.tools/PanoView> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3170,
@@ -56853,7 +45521,7 @@ If you need to convert files from one markup format into another, pandoc is your
     sc:url "https://github.com/mhu10/scPanoView" .
 
 <https://bio.tools/PanoromiX> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0634,
@@ -56875,7 +45543,7 @@ If you need to convert files from one markup format into another, pandoc is your
     sc:url "https://bioinfo-abcc.ncifcrf.gov/panoromics/" .
 
 <https://bio.tools/PaperBot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3068,
         edam:topic_3303,
@@ -56896,7 +45564,7 @@ If you need to convert files from one markup format into another, pandoc is your
     sc:url "http://paperbot.ai/" .
 
 <https://bio.tools/ParGenes> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_3068 ;
@@ -56916,7 +45584,7 @@ If you need to convert files from one markup format into another, pandoc is your
     biotools:primaryContact "Benoit Morel" .
 
 <https://bio.tools/ParLECH> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
@@ -56934,7 +45602,7 @@ BACKGROUND:Long-read sequencing has shown the promises to overcome the short len
     sc:url "https://github.com/arghyakusumdas/GenomicErrorCorrection" .
 
 <https://bio.tools/Paragraph> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0625 ;
     sc:citation <https://doi.org/10.1101/635011> ;
@@ -56951,75 +45619,14 @@ BACKGROUND:Long-read sequencing has shown the promises to overcome the short len
     sc:softwareHelp <https://github.com/Illumina/paragraph/blob/master/README.md> ;
     sc:url "https://github.com/Illumina/paragraph" .
 
-<https://bio.tools/Paragraph_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0625,
-        edam:topic_3175,
-        edam:topic_3673 ;
-    sc:citation <https://doi.org/10.1186/S13059-019-1909-7>,
-        "pmcid:PMC6921448",
-        "pubmed:31856913" ;
-    sc:description """a graph-based structural variant genotyper for short-read sequence data.
-
-Accurate detection and genotyping of structural variations (SVs) from short-read data is a long-standing area of development in genomics research and clinical sequencing pipelines. We introduce Paragraph, an accurate genotyper that models SVs using sequence graphs and SV annotations. We demonstrate the accuracy of Paragraph on whole-genome sequence data from three samples using long-read SV calls as the truth set, and then apply Paragraph at scale to a cohort of 100 short-read sequenced samples of diverse ancestry. Our analysis shows that Paragraph has better accuracy than other existing genotypers and can be applied to population-scale studies.
-
-||| HOMEPAGE MISSING!.
-
-||| NAME EQUAL TO (PUB. DIFFERENT) bio.tools/Paragraph""" ;
-    sc:featureList edam:operation_0487,
-        edam:operation_3196,
-        edam:operation_3227,
-        edam:operation_3228 ;
-    sc:name "Paragraph_autogenerated" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31856913" .
-
 <https://bio.tools/Paraload> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "Paraload is an original utility which ensures job distribution between thousands of processors, according to the type of the data to be analysed." ;
     sc:name "Paraload" ;
     sc:url "ftp://doua.prabi.fr/pub/logiciel/paraload" .
 
-<https://bio.tools/Parenting_apps_review> a sc:SoftwareApplication ;
-    sc:citation <https://doi.org/10.21037/MHEALTH.2019.08.10>,
-        "pmcid:PMC6789304",
-        "pubmed:31620471" ;
-    sc:description """in search of good quality apps.
-
-Google er tilgængelig på: English Føroyskt.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'parenting apps', 'apps'""" ;
-    sc:featureList edam:operation_2421,
-        edam:operation_3096 ;
-    sc:name "Parenting apps review" ;
-    sc:url "https://www.google.ca/?gws_rd=ssl#q=parenting+apps" .
-
-<https://bio.tools/Partition_autogenerated> a sc:SoftwareApplication ;
-    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTZ661>,
-        "pubmed:31504178" ;
-    sc:description "> MEDIUM CONFIDENCE! | > NAME EQUAL TO (PUB. DIFFERENT) bio.tools/partition | a surjective mapping approach for dimensionality reduction | Agglomerative Partitioning Framework for Dimension Reduction | A fast and flexible framework for agglomerative partitioning. 'partition' uses an approach called Direct-Measure-Reduce to create new variables that maintain the user-specified minimum level of information. Each reduced variable is also interpretable: the original variables map to one and only one variable in the reduced data set. 'partition' is flexible, as well: how variables are selected to reduce, how information loss is measured, and the way data is reduced can all be customized" ;
-    sc:license "MIT" ;
-    sc:name "Partition_autogenerated" ;
-    sc:url "https://cran.r-project.org/package=partition" .
-
-<https://bio.tools/Partnering_Pain> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3376,
-        edam:topic_3401,
-        edam:topic_3416,
-        edam:topic_3418,
-        edam:topic_3421 ;
-    sc:citation <https://doi.org/10.9778/CMAJO.20190060>,
-        "pmcid:PMC6839970",
-        "pubmed:31699686" ;
-    sc:description """a Priority Setting Partnership to identify patient-oriented research priorities for pediatric chronic pain in Canada.
-
-Children with chronic pain and their families are experts on what it’s like to live with pain lasting months to years, but until now, research has not asked what issues they care about most.
-
-Approximately 1 to 3 million Canadian children and teens live with chronic pain""" ;
-    sc:featureList edam:operation_3454 ;
-    sc:name "Partnering Pain" ;
-    sc:url "http://www.partneringforpain.com" .
-
 <https://bio.tools/PastML> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3293 ;
     sc:citation <https://doi.org/10.1093/MOLBEV/MSZ131>,
@@ -57040,7 +45647,7 @@ Approximately 1 to 3 million Canadian children and teens live with chronic pain"
         "Olivier Gascuel" .
 
 <https://bio.tools/PastView> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0610,
@@ -57061,25 +45668,25 @@ Approximately 1 to 3 million Canadian children and teens live with chronic pain"
     biotools:primaryContact "Francois Chevenet" .
 
 <https://bio.tools/Pasteur_MLST> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "Catalogue of public databases for molecular typing and microbial genome diversity." ;
     sc:name "Pasteur MLST" ;
     sc:url "https://pubmlst.org/databases.shtml" .
 
 <https://bio.tools/PatchSearch> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2877" ;
-            sc:name "Protein complex" ;
-            sc:sameAs "http://edamontology.org/data_2877" ],
+            sc:additionalType "http://edamontology.org/data_1127" ;
+            sc:encodingFormat "http://edamontology.org/format_1957" ;
+            sc:name "PDB ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1127" ;
-            sc:name "PDB ID" ;
-            sc:sameAs "http://edamontology.org/data_1127" ] ;
+            sc:additionalType "http://edamontology.org/data_2877" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein complex" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1401" ;
-            sc:name "Match reward score" ;
-            sc:sameAs "http://edamontology.org/data_1401" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1401" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Match reward score" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0166,
@@ -57099,7 +45706,7 @@ Approximately 1 to 3 million Canadian children and teens live with chronic pain"
         "Julien Rey" .
 
 <https://bio.tools/Path4Drug> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:citation <https://doi.org/10.3389/fphar.2021.708296> ;
     sc:description "The workflow involves a computational technique that employs propagation of drug-protein and protein-protein interactions to predict the biological pathways that are affected by a drug or compound. Reliable, openly available repositories (CHEMBL, TTD, DrugBank, PharmGKB, IUPHAR, Intact, MINT) were used for connecting pharmaceutically relevant compounds to their target proteins in human and the target proteins to their first-degree interactors. Since these databases differ in their architecture and accessibility, diverse sub-workflows with filtering steps were created ensuring the quality of the retrieved data." ;
     sc:featureList edam:operation_2423 ;
@@ -57107,7 +45714,7 @@ Approximately 1 to 3 million Canadian children and teens live with chronic pain"
     sc:url "https://www.ebi.ac.uk/transqst/transqstWeb/DRUG_PATHWAY_RESOURCE" .
 
 <https://bio.tools/PathBank> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0602,
@@ -57135,7 +45742,7 @@ A Pathway for Every Protein""" ;
     sc:url "http://www.pathbank.org" .
 
 <https://bio.tools/PathCNN> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3382,
@@ -57154,7 +45761,7 @@ A Pathway for Every Protein""" ;
     biotools:primaryContact "Seda Bilaloglu" .
 
 <https://bio.tools/PathClass> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -57176,7 +45783,7 @@ Alcaraz et al., De novo pathway-based classification of breast cancer subtypes (
     sc:url "https://pathclass.compbio.sdu.dk/" .
 
 <https://bio.tools/PathFXweb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0625,
@@ -57197,7 +45804,7 @@ Alcaraz et al., De novo pathway-based classification of breast cancer subtypes (
     sc:url "https://www.pathfxweb.net/" .
 
 <https://bio.tools/PathFlowAI> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_0769,
@@ -57210,7 +45817,7 @@ Alcaraz et al., De novo pathway-based classification of breast cancer subtypes (
     sc:url "https://github.com/jlevy44/PathFlowAI" .
 
 <https://bio.tools/PathMe> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0091,
@@ -57235,7 +45842,7 @@ Alcaraz et al., De novo pathway-based classification of breast cancer subtypes (
     biotools:primaryContact "Daniel Domingo-Fernández" .
 
 <https://bio.tools/Pathfinder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0634 ;
     sc:citation <https://doi.org/10.12688/F1000RESEARCH.20352.1> ;
@@ -57246,14 +45853,14 @@ Alcaraz et al., De novo pathway-based classification of breast cancer subtypes (
 
 <https://bio.tools/PathwayCommons_SPARQL_endpoint> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3786" ;
-            sc:name "Query script" ;
-            sc:sameAs "http://edamontology.org/data_3786" ] ;
+            sc:additionalType "http://edamontology.org/data_3786" ;
+            sc:encodingFormat "http://edamontology.org/format_3790" ;
+            sc:name "Query script" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:encodingFormat "http://edamontology.org/format_3261" ;
+            sc:name "Pathway or network" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "SPARQL endpoint" ;
     sc:applicationSubCategory edam:topic_2259,
         edam:topic_3307 ;
@@ -57269,26 +45876,26 @@ Alcaraz et al., De novo pathway-based classification of breast cancer subtypes (
 
 <https://bio.tools/PathwayCommons_web_service_API> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3786" ;
-            sc:name "Query script" ;
-            sc:sameAs "http://edamontology.org/data_3786" ],
+            sc:additionalType "http://edamontology.org/data_3786" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Query script" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0968" ;
-            sc:name "Keyword" ;
-            sc:sameAs "http://edamontology.org/data_0968" ],
+            sc:additionalType "http://edamontology.org/data_0968" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Keyword" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1047" ;
-            sc:name "URI" ;
-            sc:sameAs "http://edamontology.org/data_1047" ],
+            sc:additionalType "http://edamontology.org/data_1047" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "URI" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0842" ;
-            sc:name "Identifier" ;
-            sc:sameAs "http://edamontology.org/data_0842" ] ;
+            sc:additionalType "http://edamontology.org/data_0842" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Identifier" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:encodingFormat "http://edamontology.org/format_3261" ;
+            sc:name "Pathway or network" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API",
         "Web service" ;
     sc:applicationSubCategory edam:topic_2259,
@@ -57304,7 +45911,7 @@ Alcaraz et al., De novo pathway-based classification of breast cancer subtypes (
     biotools:primaryContact <https://orcid.org/0000-0003-0185-8861> .
 
 <https://bio.tools/PathwayMatcher> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0601,
@@ -57322,92 +45929,8 @@ Alcaraz et al., De novo pathway-based classification of breast cancer subtypes (
         <http://github.com/PathwayAnalysisPlatform/PathwayMatcher/wiki/queries> ;
     sc:url "http://github.com/PathwayAnalysisPlatform/PathwayMatcher" .
 
-<https://bio.tools/PathwayWP4754> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0601,
-        edam:topic_0602,
-        edam:topic_0749,
-        edam:topic_2830,
-        edam:topic_3512 ;
-    sc:citation <https://doi.org/10.1007/S12079-019-00544-4>,
-        "pubmed:31863285" ;
-    sc:description """A comprehensive pathway map of IL-18-mediated signalling.
-
-IL-18 signaling pathway (Homo sapiens).
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'WikiPathways' (bio.tools/wikipathways), 'IL-18', 'IL-18-mediated', 'cytokines'""" ;
-    sc:featureList edam:operation_0417,
-        edam:operation_0533,
-        edam:operation_3083 ;
-    sc:name "Pathway:WP4754" ;
-    sc:url "https://www.wikipathways.org/index.php/Pathway:WP4754" .
-
-<https://bio.tools/Pathway_Commons_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0121,
-        edam:topic_0154,
-        edam:topic_0602,
-        edam:topic_0632,
-        edam:topic_3172 ;
-    sc:citation <https://doi.org/10.1093/NAR/GKZ946>,
-        <https://doi.org/10.1101/788521>,
-        "pubmed:31647099" ;
-    sc:description """integration, analysis and exploration of pathway data.
-
-Pathway visualization and analysis tool for Pathway Commons and other BioPAX data.
-
-A Resource for Biological Pathway Analysis.
-
-pathway-commons-help – Google Grupper.
-
-Name Last modified Size Description.
-
-I Google Grupper kan du oprette og deltage i onlinefora og mailbaserede grupper til samtaler i fællesskaber.
-
-Pathway Commons aims to collect and disseminate biological pathway and interaction data.
-
-Access and discover data integrated from public pathway and interactions databases.
-
-pathway-commons-help Delt offentligt Sådan tilmelder du dig Vis alle emner.
-
-||| NAME EQUAL TO (PUB. DIFFERENT) bio.tools/pathway_commons.
-
-||| COMMON LINK WITH (PUB. & NAME DIFFERENT) bio.tools/PathwayCommons_SPARQL_endpoint (PATHWAYCOMMONS.ORG ; PATHWAYCOMMONS.ORG/guide), bio.tools/pymzml (GITHUB.COM).
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'Pathway Commons 2019 Update'""" ;
-    sc:featureList edam:operation_0533,
-        edam:operation_2422,
-        edam:operation_2436,
-        edam:operation_3083,
-        edam:operation_3439 ;
-    sc:name "Pathway Commons_autogenerated" ;
-    sc:softwareHelp <http://groups.google.com/forum/#!forum/pathway-commons-help>,
-        <http://pathwaycommons.org/guide> ;
-    sc:url "https://www.pathwaycommons.org" .
-
-<https://bio.tools/Pathway_Tools_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0154,
-        edam:topic_0602,
-        edam:topic_0605,
-        edam:topic_3172,
-        edam:topic_3407 ;
-    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTZ813>,
-        "pubmed:31688932" ;
-    sc:description """Taxonomic Weighting Improves the Accuracy of a Gap-Filling Algorithm for Metabolic Models.
-
-The Pathway Tools software performs computational genomics, metabolic reconstruction and modeling, and analysis of gene-expression and metabolomics data.
-
-Pathway Tools is a comprehensive systems biology software system that is associated with the BioCyc database collection. The software has been licensed by more than 10,000 groups and powers a number of websites for biological databases. Pathway Tools integrates a broad set of capabilities that span genome informatics, pathway informatics, regulatory informatics, and omics data analysis. The software supports multiple use cases in bioinformatics and systems biology:.
-
-||| NAME EQUAL TO (PUB. DIFFERENT) bio.tools/pathway_tools.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'Pathway Tools software', 'taxgap', 'gap-filling'""" ;
-    sc:featureList edam:operation_3083,
-        edam:operation_3439,
-        edam:operation_3660 ;
-    sc:name "Pathway Tools_autogenerated" ;
-    sc:url "http://pathwaytools.com" .
-
 <https://bio.tools/Pathways_Analyzer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3407,
@@ -57423,28 +45946,8 @@ Pathway Tools is a comprehensive systems biology software system that is associa
     sc:softwareHelp <https://gitlab.com/lvasquezcr/pathways-analyzer/blob/master/README.md> ;
     sc:url "https://gitlab.com/lvasquezcr/pathways-analyzer/" .
 
-<https://bio.tools/Pay_PIED_Piper> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3382,
-        edam:topic_3473,
-        edam:topic_3810 ;
-    sc:citation <https://doi.org/10.1111/GWAT.12953>,
-        "pubmed:31647117" ;
-    sc:description """Guidelines to Visualize Large Geochemical Datasets on Piper Diagrams.
-
-PIED Piper – Lautz Hydrology Research Group.
-
-Please cite as: (Russoniello and Lautz, 2019).
-
-Russoniello, CJ, LK Lautz. Accepted and available online. Pay the PIED Piper: Guidelines to visualize large geochemical datasets on Piper Diagrams. Groundwater. doi: 10.1111/gwat.12953. Available from the following webpage: https://hydrology.syr.edu/pied-piper/.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'PIED Piper', 'Piper diagrams PIED Piper'""" ;
-    sc:featureList edam:operation_0337,
-        edam:operation_3432 ;
-    sc:name "Pay PIED Piper" ;
-    sc:url "http://hydrology.syr.edu/pied-piper" .
-
 <https://bio.tools/PeCanPIE> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_2640,
@@ -57460,7 +45963,7 @@ Russoniello, CJ, LK Lautz. Accepted and available online. Pay the PIED Piper: Gu
     sc:url "https://pecan.stjude.cloud/variant/67664" .
 
 <https://bio.tools/PeNGaRoo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3474,
         edam:topic_3510,
         edam:topic_3512 ;
@@ -57479,7 +45982,7 @@ Gram-positive bacteria have developed secretion systems to transport proteins ac
     sc:url "http://pengaroo.erc.monash.edu/" .
 
 <https://bio.tools/PeSA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
         edam:topic_3295 ;
@@ -57492,25 +45995,8 @@ Gram-positive bacteria have developed secretion systems to transport proteins ac
     sc:name "PeSA" ;
     sc:url "http://www.github.com/EmineTopcu/PeSA" .
 
-<https://bio.tools/PeSA_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0128,
-        edam:topic_0154,
-        edam:topic_0160 ;
-    sc:citation <https://doi.org/10.1016/J.COMPBIOLCHEM.2019.107145>,
-        "pubmed:31677504" ;
-    sc:description """A software tool for peptide specificity analysis.
-
-The discovery and characterization of molecular interactions is crucial towards a better understanding of complex biological processes. Particularly protein-protein interactions (i.e., PPIs), which are responsible for a variety of cellular functions from intracellular signaling to enzyme-substrate specificity, have been studied broadly over the past decades. Position-specific scoring matrices (PSSM) in particular are used extensively to help determine interaction specificity or candidate interaction motifs at the residue level. However, not all studies successfully report their results as a candidate interaction motif. In many cases, this may be due to a lack of suitable tools for simple analysis and motif generation.
-
-||| HOMEPAGE MISSING!.
-
-||| NAME EQUAL TO (PUB. DIFFERENT) bio.tools/PeSA""" ;
-    sc:featureList edam:operation_0564 ;
-    sc:name "PeSA_autogenerated" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31677504" .
-
 <https://bio.tools/PeakProbe> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3314,
@@ -57527,26 +46013,21 @@ The discovery and characterization of molecular interactions is crucial towards
 
 <https://bio.tools/PeanutMine> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2353" ;
-            sc:name "Ontology data" ;
-            sc:sameAs "http://edamontology.org/data_2353" ],
+            sc:additionalType "http://edamontology.org/data_2353" ;
+            sc:name "Ontology data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ] ;
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:name "Sequence features" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ],
+            sc:additionalType "http://edamontology.org/data_3753" ;
+            sc:name "Over-representation data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3753" ;
-            sc:name "Over-representation data" ;
-            sc:sameAs "http://edamontology.org/data_3753" ],
+            sc:additionalType "http://edamontology.org/data_3786" ;
+            sc:name "Query script" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3786" ;
-            sc:name "Query script" ;
-            sc:sameAs "http://edamontology.org/data_3786" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:name "Sequence features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application",
         "Web service" ;
@@ -57570,7 +46051,7 @@ The discovery and characterization of molecular interactions is crucial towards
     sc:url "https://mines.legumeinfo.org/peanutmine" .
 
 <https://bio.tools/Ped-sim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0625,
@@ -57597,7 +46078,7 @@ Sample ids for simulated individuals""" ;
     sc:url "https://github.com/williamslab/ped-sim" .
 
 <https://bio.tools/PedMap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3305,
@@ -57620,27 +46101,8 @@ A pediatric disease map shows the relationships among the most common pediatric
     sc:name "PedMap" ;
     sc:url "http://pedmap.nbscn.org" .
 
-<https://bio.tools/Pelodiscus_sinensis> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0602,
-        edam:topic_0621,
-        edam:topic_0632,
-        edam:topic_3170,
-        edam:topic_3308 ;
-    sc:citation <https://doi.org/10.1007/S00427-019-00639-3>,
-        "pubmed:31712893" ;
-    sc:description """Transcriptome analysis provides insight into the role of the melanin pathway in two differently pigmented strains of the turtle Pelodiscus sinensis.
-
-Pelodiscus sinensis is the most common turtle species raised in East and Southeast Asia. The Japanese strain and the Qingxi black strain are important aquatic breeds of P. sinensis in China with unique characteristics in terms of production performance and appearance, including skin color. In this study, melanin content measure and histological analysis on skin samples of these two strains were carried out to compare their color characteristics. The results showed that Qingxi black turtles clearly have a greater ability to deposit melanin than the Japanese strain especially in the abdomen.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'Qingxi', 'sinensis', 'log2FoldChange', 'DESeq' (bio.tools/deseq)""" ;
-    sc:featureList edam:operation_0524,
-        edam:operation_3223,
-        edam:operation_3431 ;
-    sc:name "Pelodiscus sinensis" ;
-    sc:url "ftp://ftp.ensembl.org/pub/release-81/fasta/pelodiscus_sinensis/dna/" .
-
 <https://bio.tools/PepFoot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -57659,7 +46121,7 @@ Pelodiscus sinensis is the most common turtle species raised in East and Southea
     biotools:primaryContact "Jedd Bellamy-Carter" .
 
 <https://bio.tools/PepPro> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0140,
         edam:topic_0154,
         edam:topic_0820,
@@ -57676,7 +46138,7 @@ Pelodiscus sinensis is the most common turtle species raised in East and Southea
     sc:url "http://zoulab.dalton.missouri.edu/PepPro_benchmark" .
 
 <https://bio.tools/PepQuery> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -57698,7 +46160,7 @@ Pelodiscus sinensis is the most common turtle species raised in East and Southea
         "PepQuery Google Group" .
 
 <https://bio.tools/PepVis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0769,
         edam:topic_2275 ;
@@ -57714,7 +46176,7 @@ The protein-peptide complexes can be rescored using ZRANK2 and the flexible refi
     sc:url "https://github.com/inpacdb/PepVis" .
 
 <https://bio.tools/Peptimapper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3512,
@@ -57737,7 +46199,7 @@ The protein-peptide complexes can be rescored using ZRANK2 and the flexible refi
     biotools:primaryContact "L. Guillot" .
 
 <https://bio.tools/PerMemDB> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0153,
         edam:topic_0621,
         edam:topic_0736,
@@ -57757,7 +46219,7 @@ The majority of all proteins in cells interact with membranes either permanently
     sc:url "http://bioinformatics.biol.uoa.gr/db=permemdb" .
 
 <https://bio.tools/Pergola-web> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0625 ;
@@ -57780,7 +46242,7 @@ The majority of all proteins in cells interact with membranes either permanently
         "Julia Ponomarenko" .
 
 <https://bio.tools/PertInInt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0602,
         edam:topic_2640 ;
@@ -57793,7 +46255,7 @@ The majority of all proteins in cells interact with membranes either permanently
     sc:url "http://github.com/Singh-Lab/PertInInt" .
 
 <https://bio.tools/PhISCS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0199 ;
     sc:citation <https://doi.org/10.1101/GR.234435.118>,
@@ -57807,7 +46269,7 @@ The majority of all proteins in cells interact with membranes either permanently
     sc:url "https://github.com/sfu-compbio/PhISCS" .
 
 <https://bio.tools/PhaSePro> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0219,
         edam:topic_0659,
         edam:topic_0736,
@@ -57825,7 +46287,7 @@ The majority of all proteins in cells interact with membranes either permanently
     biotools:primaryContact "Rita Pancsa" .
 
 <https://bio.tools/PhaSepDB> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0078,
         edam:topic_0121,
@@ -57843,7 +46305,7 @@ In addition to curated proteins, PhaSepDB also provides the researchers with mol
     sc:url "http://db.phasep.pro/" .
 
 <https://bio.tools/PhagePromoter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3307 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btz580> ;
@@ -57853,7 +46315,7 @@ In addition to curated proteins, PhaSepDB also provides the researchers with mol
     sc:url "https://www.bit.do/phagepromoter" .
 
 <https://bio.tools/PhageXpress> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_2830,
         edam:topic_3047,
@@ -57868,21 +46330,10 @@ In addition to curated proteins, PhaSepDB also provides the researchers with mol
     sc:name "PhageXpress" ;
     sc:url "https://github.com/mdcao/phagexpress" .
 
-<https://bio.tools/PharmActa> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3378,
-        edam:topic_3403 ;
-    sc:citation <https://doi.org/10.1016/J.JBI.2019.103336>,
-        "pubmed:31689550" ;
-    sc:description """Personalized pharmaceutical care eHealth platform for patients and pharmacists.
-
-Community pharmacists are critically placed in the patient care chain being an extended frontline within primary healthcare networks across Europe. They are trained to ensure safe and effective medication use, a crucial and responsible role, extending beyond the common misconception limited to just providing timely access to medicines for the population. Technology-wise, eHealth being committed to an effective, networked, patient-centered and accessible healthcare would prove a real asset in this direction by achieving improved therapy adherence with better outcomes and direct contribution to a cost-effective healthcare system. In this work, we present PharmActa, a personalized eHealth platform that addresses key features of pharmaceutical care and enhances communication of pharmacists with patients for optimizing pharmacotherapy.
-
-||| HOMEPAGE MISSING!""" ;
-    sc:name "PharmActa" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31689550" .
-
 <https://bio.tools/PharmOmics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0634,
         edam:topic_3375,
@@ -57895,11 +46346,16 @@ PharmOmics apps were implemented with Rshiny and depend on javascript. In case o
     sc:featureList edam:operation_0277,
         edam:operation_3223,
         edam:operation_3431 ;
+    sc:isAccessibleForFree true ;
     sc:name "PharmOmics" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <http://mergeomics.research.idre.ucla.edu/tutorial_pharmomics.php> ;
     sc:url "http://mergeomics.research.idre.ucla.edu/PharmOmics/" .
 
 <https://bio.tools/Pharmmaker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0176,
         edam:topic_0632,
@@ -57917,7 +46373,7 @@ PharmOmics apps were implemented with Rshiny and depend on javascript. In case o
     sc:url "http://prody.csb.pitt.edu/pharmmaker" .
 
 <https://bio.tools/PheGWAS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0153,
         edam:topic_2885,
@@ -57931,18 +46387,28 @@ PharmOmics apps were implemented with Rshiny and depend on javascript. In case o
     sc:url "https://github.com/georgeg0/PheGWAS" .
 
 <https://bio.tools/PheValuator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3422 ;
     sc:citation <https://doi.org/10.1016/J.JBI.2019.103258>,
-        "pubmed:31369862" ;
+        <https://doi.org/10.1016/J.JBI.2022.104177>,
+        "pubmed:31369862",
+        "pubmed:35995107" ;
     sc:description "PheValuator is a phenotype algorithm evaluator." ;
     sc:featureList edam:operation_2428 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Apache-2.0" ;
     sc:name "PheValuator" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://ohdsi.github.io/PheValuator/> ;
+    sc:softwareVersion "2.0" ;
     sc:url "https://github.com/OHDSI/PheValuator" .
 
 <https://bio.tools/Phen-Gen> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0625,
@@ -57961,7 +46427,7 @@ PharmOmics apps were implemented with Rshiny and depend on javascript. In case o
     sc:url "http://phen-gen.org/" .
 
 <https://bio.tools/Phen2Gene> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0218,
         edam:topic_0625,
@@ -57976,18 +46442,8 @@ PharmOmics apps were implemented with Rshiny and depend on javascript. In case o
     sc:name "Phen2Gene" ;
     sc:url "https://phen2gene.wglab.org/" .
 
-<https://bio.tools/PhenX> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3384,
-        edam:topic_3419,
-        edam:topic_3517 ;
-    sc:citation <https://doi.org/10.1016/J.BPSC.2019.06.009>,
-        "pubmed:31439493" ;
-    sc:description "> MEDIUM CONFIDENCE! | > COMMON LINK WITH (PUB. & NAME DIFFERENT) bio.tools/PhenX_Toolkit (PHENXTOOLKIT.ORG) | > CORRECT NAME OF TOOL COULD ALSO BE 'PhenX Toolkit' (bio.tools/PhenX_Toolkit), 'Psychosis', 'PhenX Mental', 'Psychosis Specialty' | Common Data Elements for National Institute of Mental Health-Funded Translational Early Psychosis Research | The PhenX Toolkit is a catalog of high-priority measures for consideration and inclusion in genome-wide association studies (GWAS) and other large-scale genomic research efforts" ;
-    sc:name "PhenX" ;
-    sc:url "https://www.phenxtoolkit.org" .
-
 <https://bio.tools/PhenX_Toolkit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3325,
@@ -58007,23 +46463,8 @@ PharmOmics apps were implemented with Rshiny and depend on javascript. In case o
         "Windows" ;
     sc:url "https://www.phenxtoolkit.org/" .
 
-<https://bio.tools/PhenX_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0625,
-        edam:topic_3305 ;
-    sc:citation "pubmed:31145562" ;
-    sc:description """PhenX—Establishing a Consensus Process to Select Common Measures for Collaborative Research.
-
-The PhenX (consensus measures for Phenotypes and eXposures) Toolkit offers well-established, broadly validated measures of phenotypes and exposures relevant to investigators in human genomics, epidemiology, and biomedical research. This methods report describes the infrastructure and processes used to develop the content and features of the Toolkit. The PhenX consensus process is robust, yet flexible, as evidenced by its application to a range of research domains. During the initial phase of PhenX, from March 2008 through April 2010, working groups of content experts addressed 21 research domains and selected 295 measures for the Toolkit. The PhenX Steering Committee prioritized and defined the scope of the domains and guided the consensus process with input from liaisons representing the National Institutes of Health.
-
-||| HOMEPAGE MISSING!.
-
-||| NAME EQUAL TO (PUB. DIFFERENT) bio.tools/PhenX""" ;
-    sc:featureList edam:operation_3454 ;
-    sc:name "PhenX_autogenerated" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31145562" .
-
 <https://bio.tools/PhenoCam> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_0749,
         edam:topic_0780,
@@ -58044,7 +46485,7 @@ This tool facilitates the retrieval and post-processing of PhenoCam time series.
     sc:url "https://phenocam.sr.unh.edu/webcam/gallery/" .
 
 <https://bio.tools/PhenoDis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_3325,
@@ -58066,7 +46507,7 @@ This tool facilitates the retrieval and post-processing of PhenoCam time series.
     biotools:primaryContact "Dr. Andreas Ruepp" .
 
 <https://bio.tools/PhenoForecaster> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_0780,
@@ -58086,7 +46527,7 @@ This tool facilitates the retrieval and post-processing of PhenoCam time series.
     biotools:primaryContact "Isaac W Park" .
 
 <https://bio.tools/PhenoGMM> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3050,
@@ -58106,7 +46547,7 @@ This tool facilitates the retrieval and post-processing of PhenoCam time series.
     sc:url "https://github.com/prubbens/PhenoGMM" .
 
 <https://bio.tools/PhenoGeneRanker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0625,
@@ -58126,7 +46567,7 @@ This tool facilitates the retrieval and post-processing of PhenoCam time series.
     sc:url "https://github.com/bozdaglab/PhenoGeneRanker" .
 
 <https://bio.tools/PhenoMeNal> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0593,
         edam:topic_3172,
@@ -58149,7 +46590,7 @@ This tool facilitates the retrieval and post-processing of PhenoCam time series.
     sc:url "https://portal.phenomenal-h2020.eu/home" .
 
 <https://bio.tools/PhenoModifier> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0621,
         edam:topic_0625,
@@ -58165,7 +46606,7 @@ This tool facilitates the retrieval and post-processing of PhenoCam time series.
     sc:url "https://www.biosino.org/PhenoModifier" .
 
 <https://bio.tools/PhenoScanner> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Database portal",
         "Web API",
@@ -58189,7 +46630,7 @@ This tool facilitates the retrieval and post-processing of PhenoCam time series.
     sc:url "http://www.phenoscanner.medschl.cam.ac.uk/" .
 
 <https://bio.tools/PhenomeXcan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3298,
         edam:topic_3308,
@@ -58202,30 +46643,8 @@ This tool facilitates the retrieval and post-processing of PhenoCam time series.
     sc:name "PhenomeXcan" ;
     sc:url "http://apps.hakyimlab.org/phenomexcan/" .
 
-<https://bio.tools/Phenomenal_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0625,
-        edam:topic_0780,
-        edam:topic_3382 ;
-    sc:citation <https://doi.org/10.1101/805739> ;
-    sc:description """An automatic open source library for 3D shoot architecture reconstruction and analysis for image-based plant phenotyping.
-
-3D reconstruction from high-throughput plant phenotyping images.
-
-Phenomenal is released under a Cecill-C licence.
-
-A software framework for model-assisted analysis of high throughput plant phenotyping data.
-
-title = {OpenAlea.Phenomenal: A Workflow for Plant Phenotyping}, month = sep, year = 2018, doi = {10.5281/zenodo.1436634}, url = {https://doi.org/10.5281/zenodo.1436634}.
-
-||| NAME (Phenomenal) SIMILAR TO (PUB. DIFFERENT) bio.tools/PhenoMeNal (PhenoMeNal)""" ;
-    sc:featureList edam:operation_0282,
-        edam:operation_3435,
-        edam:operation_3799 ;
-    sc:name "Phenomenal_autogenerated" ;
-    sc:url "https://github.com/openalea/phenomenal" .
-
 <https://bio.tools/Phenopolis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0089,
@@ -58246,7 +46665,7 @@ title = {OpenAlea.Phenomenal: A Workflow for Plant Phenotyping}, month = sep, ye
     sc:url "https://phenopolis.org/" .
 
 <https://bio.tools/Phenoscape> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0089,
         edam:topic_0625,
@@ -58264,7 +46683,7 @@ title = {OpenAlea.Phenomenal: A Workflow for Plant Phenotyping}, month = sep, ye
     sc:url "http://phenoscape.org" .
 
 <https://bio.tools/PhiMRF> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0602,
         edam:topic_0621,
@@ -58280,7 +46699,7 @@ title = {OpenAlea.Phenomenal: A Workflow for Plant Phenotyping}, month = sep, ye
     sc:url "https://github.com/ashleyzhou972/PhiMRF" .
 
 <https://bio.tools/PhilDB> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3077,
         edam:topic_3489 ;
     sc:citation <https://doi.org/10.7287/PEERJ.PREPRINTS.1488V2> ;
@@ -58292,31 +46711,8 @@ Timeseries database project is for storing potentially changing timeseries data.
     sc:softwareHelp <http://phildb.readthedocs.org/en/latest/api/phildb.html#module-phildb.database> ;
     sc:url "http://github.com/amacd31/phildb" .
 
-<https://bio.tools/Phobos_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3068,
-        edam:topic_3382,
-        edam:topic_3500 ;
-    sc:citation <https://doi.org/10.3389/FNBEH.2019.00205>,
-        "pmcid:PMC6753174",
-        "pubmed:31572139" ;
-    sc:description """A Freely Available, Self-Calibrating Software for Automatic Measurement of Freezing Behavior.
-
-Phobos - Version 1.0 – May 21, 2019.
-
-Distributed by Felippe E. Amorim, Thiago C. Moulin and Olavo B. Amaral.
-
-Phobos is a software for the automated analysis of freezing behavior in rodents. Unlike other programs, it uses manual quantification of a short video to calibrate parameters for optimal freezing detection. Phobos works with 3 user interfaces (UIs) for this purpose. The main user UI is where the user loads videos for quantification, defines an output folder and creates the .xls file with the results. The Video Parameters UI is where the user defines the beginning and end times for freezing detection in the videos and crops the image to restrict the analysis to a specific area. Finally, the Manual Quantification UI is used to manually quantify freezing in a video, which will then be used as a reference for the calibration process.
-
-||| NAME EQUAL TO (PUB. DIFFERENT) bio.tools/phobos""" ;
-    sc:featureList edam:operation_2428,
-        edam:operation_3659,
-        edam:operation_3799 ;
-    sc:license "BSD-3-Clause" ;
-    sc:name "Phobos_autogenerated" ;
-    sc:url "https://github.com/Felippe-espinelli/Phobos" .
-
 <https://bio.tools/Phobos_freeze> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3068,
         edam:topic_3382,
         edam:topic_3500 ;
@@ -58332,7 +46728,7 @@ Phobos is a software for the automated analysis of freezing behavior in rodents.
     sc:url "https://github.com/Felippe-espinelli/Phobos" .
 
 <https://bio.tools/Phoenix_Enhancer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
         edam:topic_0154,
@@ -58347,7 +46743,7 @@ Phobos is a software for the automated analysis of freezing behavior in rodents.
     sc:url "http://enhancer.ncpsb.org.cn/index" .
 
 <https://bio.tools/Phosphoproteome_Prediction> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_2640,
         edam:topic_3474 ;
@@ -58361,7 +46757,7 @@ Phobos is a software for the automated analysis of freezing behavior in rodents.
     sc:url "https://github.com/GuanLab/phosphoproteome_prediction" .
 
 <https://bio.tools/PhyChro> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0194,
         edam:topic_0196,
@@ -58378,7 +46774,7 @@ Phobos is a software for the automated analysis of freezing behavior in rodents.
     sc:url "http://www.lcqb.upmc.fr/phychro2/" .
 
 <https://bio.tools/PhyDL> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0194,
         edam:topic_3293,
         edam:topic_3474,
@@ -58393,28 +46789,8 @@ Phobos is a software for the automated analysis of freezing behavior in rodents.
     sc:name "PhyDL" ;
     sc:url "https://gitlab.com/ztzou/phydl" .
 
-<https://bio.tools/PhyDL_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0194,
-        edam:topic_3293,
-        edam:topic_3474,
-        edam:topic_3512 ;
-    sc:citation <https://doi.org/10.1093/MOLBEV/MSZ307>,
-        "pubmed:31868908" ;
-    sc:description """Deep residual neural networks resolve quartet molecular phylogenies.
-
-Phylogenetics by Deep Learning. A residual neural network for inference of quartet phylogenetic tree topology.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'Phylogenetics Deep Learning'""" ;
-    sc:featureList edam:operation_0323,
-        edam:operation_0325,
-        edam:operation_0326,
-        edam:operation_0551,
-        edam:operation_0567 ;
-    sc:name "PhyDL_autogenerated" ;
-    sc:url "https://gitlab.com/ztzou/phydl" .
-
 <https://bio.tools/PhyMLSMS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0091,
@@ -58431,7 +46807,7 @@ Phylogenetics by Deep Learning. A residual neural network for inference of quart
     sc:url "http://www.atgc-montpellier.fr/sms/" .
 
 <https://bio.tools/PhySigs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0199,
         edam:topic_0602,
@@ -58445,7 +46821,7 @@ PhySigs automatically computes the count matrix, as it is simply a diagonal matr
     sc:url "https://github.com/elkebir-group/PhySigs" .
 
 <https://bio.tools/PhySpeTree> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0194,
         edam:topic_0621,
         edam:topic_0659,
@@ -58464,7 +46840,7 @@ PhySigs automatically computes the count matrix, as it is simply a diagonal matr
     sc:url "https://pypi.org/project/PhySpeTree/" .
 
 <https://bio.tools/Phydelity> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_3305,
         edam:topic_3324 ;
@@ -58481,7 +46857,7 @@ PhySigs automatically computes the count matrix, as it is simply a diagonal matr
     sc:url "https://github.com/alvinxhan/Phydelity" .
 
 <https://bio.tools/Phyllosticta_citricarpa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0780,
         edam:topic_3305 ;
@@ -58493,7 +46869,7 @@ PhySigs automatically computes the count matrix, as it is simply a diagonal matr
     sc:url "https://genome.jgi.doe.gov/Phyllosticta" .
 
 <https://bio.tools/PhyloCSF> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3293,
         edam:topic_3512,
         edam:topic_3517 ;
@@ -58508,7 +46884,7 @@ PhySigs automatically computes the count matrix, as it is simply a diagonal matr
     sc:url "https://github.com/mlin/PhyloCSF/wiki" .
 
 <https://bio.tools/PhyloMagnet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3174,
         edam:topic_3293,
@@ -58528,7 +46904,7 @@ PhySigs automatically computes the count matrix, as it is simply a diagonal matr
     sc:url "http://github.com/maxemil/PhyloMagnet" .
 
 <https://bio.tools/PhyloNet-rice> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0194,
         edam:topic_0602,
         edam:topic_3293 ;
@@ -58542,22 +46918,8 @@ PhySigs automatically computes the count matrix, as it is simply a diagonal matr
     sc:name "PhyloNet" ;
     sc:url "https://bioinfocs.rice.edu/PhyloNet" .
 
-<https://bio.tools/PhyloNet_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0194,
-        edam:topic_0602,
-        edam:topic_3293 ;
-    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTZ359>,
-        "pmcid:PMC6612858",
-        "pubmed:31510688" ;
-    sc:description "> LOW CONFIDENCE! | > NAME EQUAL TO (PUB. DIFFERENT) bio.tools/phylonet | > CORRECT NAME OF TOOL COULD ALSO BE 'phylogenetic networks', 'phylogenetic network', 'IMPLEMENTATION:We' | A divide-and-conquer method for scalable phylogenetic network inference from multilocus data | For NetID Login, click the login button below. You will be sent to a secure Rice login page | The current version of PhyloNet is 3.8.0 | Development of the various functionalities in PhyloNet has been generously supported by DOE (DE-FG02-06ER25734), NIH (R01LM009494), and NSF (CCF-0622037, DBI-1062463, CCF-1302179, CCF-1514177) grants and Sloan and Guggenheim fellowships to Luay Nakhleh" ;
-    sc:featureList edam:operation_0547,
-        edam:operation_3501,
-        edam:operation_3562 ;
-    sc:name "PhyloNet_autogenerated" ;
-    sc:url "https://bioinfocs.rice.edu/PhyloNet" .
-
 <https://bio.tools/PhyloToL> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0194,
@@ -58579,43 +46941,8 @@ PhySigs automatically computes the count matrix, as it is simply a diagonal matr
     biotools:primaryContact "L. A. Katz",
         "Mario Cerón-Romero" .
 
-<https://bio.tools/PhylomeDB> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
-    sc:additionalType "Database portal" ;
-    sc:applicationSubCategory edam:topic_0084,
-        edam:topic_0194,
-        edam:topic_0621,
-        edam:topic_0634 ;
-    sc:citation <https://doi.org/10.1093/nar/gkab966>,
-        <https://doi.org/10.1093/nar/gkm899>,
-        <https://doi.org/10.1093/nar/gkq1109>,
-        <https://doi.org/10.1093/nar/gkt1177>,
-        "pmcid:PMC2238872",
-        "pmcid:PMC3013701",
-        "pmcid:PMC3964985",
-        "pmcid:PMC8728271",
-        "pubmed:17962297",
-        "pubmed:21075798",
-        "pubmed:24275491",
-        "pubmed:34718760" ;
-    sc:description "PhylomeDB is a public database for complete catalogs of gene phylogenie. It allows users to interactively explore the evolutionary history of genes through the visualization of phylogenetic trees and multiple sequence alignments. Moreover, phylomeDB provides genome-wide orthology and paralogy predictions which are based on the analysis of the phylogenetic trees. The automated pipeline used to reconstruct trees aims at providing a high-quality phylogenetic analysis of different genomes, including Maximum Likelihood tree inference, alignment trimming and evolutionary model testing." ;
-    sc:featureList edam:operation_0499,
-        edam:operation_0544,
-        edam:operation_2423,
-        edam:operation_3478 ;
-    sc:isAccessibleForFree true ;
-    sc:license "Other" ;
-    sc:name "PhylomeDB" ;
-    sc:operatingSystem "Linux" ;
-    sc:softwareHelp <http://phylomedb.org/about>,
-        <http://phylomedb.org/faq>,
-        <http://phylomedb.org/help> ;
-    sc:softwareVersion "5.0" ;
-    sc:url "http://phylomeDB.org" ;
-    biotools:primaryContact "Toni Gabaldón" .
-
 <https://bio.tools/PhyreRisk> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0121,
@@ -58639,7 +46966,7 @@ PhySigs automatically computes the count matrix, as it is simply a diagonal matr
     biotools:primaryContact "Alessia David" .
 
 <https://bio.tools/PhysMPrePro> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0749,
         edam:topic_3318,
@@ -58653,40 +46980,42 @@ PhySigs automatically computes the count matrix, as it is simply a diagonal matr
     sc:url "http://202.207.14.87:8032/bioinformation/PhysMPrePro/index.asp" .
 
 <https://bio.tools/PhysiCell> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
-        edam:topic_3316,
-        edam:topic_3400 ;
+        edam:topic_2259,
+        edam:topic_3316 ;
     sc:citation <https://doi.org/10.1039/C9ME00036D>,
+        <https://doi.org/10.1371/journal.pcbi.1005991>,
         "pmcid:PMC6690424",
         "pubmed:31497314" ;
     sc:description "PhysiCell is a physics-based cell simulator." ;
     sc:featureList edam:operation_2476 ;
+    sc:isAccessibleForFree true ;
+    sc:license "BSD-3-Clause" ;
     sc:name "PhysiCell" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <http://www.mathcancer.org/blog/physicell-tutorials/> ;
     sc:url "http://physicell.mathcancer.org" .
 
 <https://bio.tools/PhytoMine> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2353" ;
-            sc:name "Ontology data" ;
-            sc:sameAs "http://edamontology.org/data_2353" ],
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:name "Sequence features" ],
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-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ] ;
+            sc:additionalType "http://edamontology.org/data_2353" ;
+            sc:name "Ontology data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3786" ;
-            sc:name "Query script" ;
-            sc:sameAs "http://edamontology.org/data_3786" ],
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:name "Sequence features" ],
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-            sc:identifier "http://edamontology.org/data_3753" ;
-            sc:name "Over-representation data" ;
-            sc:sameAs "http://edamontology.org/data_3753" ],
+            sc:additionalType "http://edamontology.org/data_3786" ;
+            sc:name "Query script" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3753" ;
+            sc:name "Over-representation data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application",
         "Web service" ;
@@ -58710,7 +47039,7 @@ PhySigs automatically computes the count matrix, as it is simply a diagonal matr
     sc:url "https://phytozome.jgi.doe.gov/phytomine/" .
 
 <https://bio.tools/PhytoTypeDB> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -58732,7 +47061,7 @@ PhySigs automatically computes the count matrix, as it is simply a diagonal matr
     sc:url "http://phytotypedb.bio.unipd.it/" .
 
 <https://bio.tools/PiMP> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3172,
@@ -58751,7 +47080,7 @@ PhySigs automatically computes the count matrix, as it is simply a diagonal matr
     biotools:primaryContact "Karl Burgess" .
 
 <https://bio.tools/PiPred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0736,
@@ -58773,7 +47102,7 @@ PhySigs automatically computes the count matrix, as it is simply a diagonal matr
     biotools:primaryContact "Stanislaw Dunin-Horkawicz" .
 
 <https://bio.tools/PiVR> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_3068,
         edam:topic_3304,
@@ -58789,7 +47118,7 @@ PiVR has been developed to track a variety of animals in real time and present t
     sc:url "http://www.PiVR.org" .
 
 <https://bio.tools/PicturedRocks> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3390,
@@ -58808,7 +47137,7 @@ PiVR has been developed to track a variety of animals in real time and present t
     biotools:primaryContact "Umang Varma" .
 
 <https://bio.tools/PinMol> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0632,
         edam:topic_3382,
@@ -58830,7 +47159,7 @@ PiVR has been developed to track a variety of animals in real time and present t
     biotools:primaryContact "Irina E. Catrina" .
 
 <https://bio.tools/PingPongPro> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_0798,
@@ -58849,19 +47178,8 @@ PiVR has been developed to track a variety of animals in real time and present t
     sc:url "https://github.com/suhrig/pingpongpro" ;
     biotools:primaryContact "Sebastian Uhrig" .
 
-<https://bio.tools/PipeMAGI> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0632,
-        edam:topic_0769,
-        edam:topic_3168 ;
-    sc:citation <https://doi.org/10.26355/EURREV_201908_18566>,
-        "pubmed:31378919" ;
-    sc:description "> MEDIUM CONFIDENCE! | > HOMEPAGE MISSING! | > CORRECT NAME OF TOOL COULD ALSO BE 'METHODS:Three', 'OBJECTIVE:We' | an integrated and validated workflow for analysis of NGS data for clinical diagnostics | OBJECTIVE:We describe how to set up a custom workflow for the analysis of next generation sequencing (NGS) data suitable for the diagnosis of genetic disorders and that meets the strictest standards of quality and accuracy. Our method goes from DNA extraction to data analysis with a computational in-house pipeline. The system was extensively validated using three publicly available Coriell samples, estimating accuracy, sensitivity and specificity. Multiple runs were also made to assess repeatability and reproducibility. MATERIALS AND METHODS:Three different Coriell samples were analyzed in a single run to perform coverage, sensitivity, specificity, accuracy, reproducibility and repeatability analysis" ;
-    sc:featureList edam:operation_3501 ;
-    sc:name "PipeMAGI" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31378919" .
-
 <https://bio.tools/PipeMEM> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_0769,
         edam:topic_3168 ;
@@ -58876,7 +47194,7 @@ PiVR has been developed to track a variety of animals in real time and present t
     sc:url "https://github.com/SCUT-CCNL/PipeMEM" .
 
 <https://bio.tools/PlaNET> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2885,
         edam:topic_3295,
@@ -58897,7 +47215,7 @@ PiVR has been developed to track a variety of animals in real time and present t
     biotools:primaryContact "Victor Yuan" .
 
 <https://bio.tools/PlaSMo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0780,
         edam:topic_2259,
         edam:topic_3489 ;
@@ -58912,39 +47230,24 @@ PiVR has been developed to track a variety of animals in real time and present t
     sc:name "PlaSMo" ;
     sc:url "https://github.com/SynthSys/PlasmoPortal" .
 
-<https://bio.tools/PlaSMo_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0780,
-        edam:topic_2259,
-        edam:topic_3489 ;
-    sc:citation <https://doi.org/10.12688/WELLCOMEOPENRES.15341.2>,
-        "pmcid:PMC6652102",
-        "pubmed:31363499" ;
-    sc:description "> MEDIUM CONFIDENCE! | > CORRECT NAME OF TOOL COULD ALSO BE 'grant dead long live data' | migration as a pragmatic exit strategy for research data preservation | Code for web app supporting PlaSMo portal (plasmo.ed.ac.uk) | Thank you for using PLaSMo. All of the models in the The Plant Systems Biology Modelling database have now been migrated to the FAIRDOMHub repository at https://fairdomhub.org/projects/129 | You can access the list of all the models here | Arabidopsis_clock_P2011 - PLM_64, version 3 | This model is termed P2011 and derives from the article: The clock gene circuit in Arabidopsis includes a repressilator with additional feedback loops | PlaSMo stands for Plant Systems-biology Modelling and the mission of the project was ensuring the achievements of yesterday's Mathematical Modellers will be available for the Systems Biologists of tomorrow | the Evening Complex genes (ELF4, ELF3, LUX)," ;
-    sc:featureList edam:operation_0481,
-        edam:operation_2422,
-        edam:operation_3431 ;
-    sc:license "MIT" ;
-    sc:name "PlaSMo_autogenerated" ;
-    sc:url "http://plasmo.ed.ac.uk" .
-
 <https://bio.tools/PlaScope> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ],
+            sc:additionalType "http://edamontology.org/data_0925" ;
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+            sc:name "Sequence assembly" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0925" ;
-            sc:name "Sequence assembly" ;
-            sc:sameAs "http://edamontology.org/data_0925" ] ;
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_1931" ;
+            sc:name "Sequence trace" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1354" ;
-            sc:name "Sequence profile" ;
-            sc:sameAs "http://edamontology.org/data_1354" ],
+            sc:additionalType "http://edamontology.org/data_1354" ;
+            sc:encodingFormat "http://edamontology.org/format_2069" ;
+            sc:name "Sequence profile" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1354" ;
-            sc:name "Sequence profile" ;
-            sc:sameAs "http://edamontology.org/data_1354" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1354" ;
+            sc:encodingFormat "http://edamontology.org/format_2069" ;
+            sc:name "Sequence profile" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0798 ;
@@ -58966,7 +47269,7 @@ PiVR has been developed to track a variety of animals in real time and present t
     biotools:primaryContact <https://orcid.org/0000-0001-9092-8336> .
 
 <https://bio.tools/PlanExp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0203,
         edam:topic_2229,
@@ -58984,26 +47287,21 @@ PiVR has been developed to track a variety of animals in real time and present t
 
 <https://bio.tools/PlanMine> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ],
+            sc:additionalType "http://edamontology.org/data_2353" ;
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         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2353" ;
-            sc:name "Ontology data" ;
-            sc:sameAs "http://edamontology.org/data_2353" ] ;
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:name "Sequence features" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ],
+            sc:additionalType "http://edamontology.org/data_3753" ;
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         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3753" ;
-            sc:name "Over-representation data" ;
-            sc:sameAs "http://edamontology.org/data_3753" ],
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:name "Sequence features" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3786" ;
-            sc:name "Query script" ;
-            sc:sameAs "http://edamontology.org/data_3786" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3786" ;
+            sc:name "Query script" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application",
         "Web service" ;
@@ -59027,7 +47325,7 @@ PiVR has been developed to track a variety of animals in real time and present t
     sc:url "http://planmine.mpi-cbg.de/planmine" .
 
 <https://bio.tools/Plant> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_0780,
         edam:topic_3512 ;
@@ -59038,27 +47336,8 @@ PiVR has been developed to track a variety of animals in real time and present t
     sc:name "Plant" ;
     sc:url "http://plantsmallrnagenes.science.psu.edu" .
 
-<https://bio.tools/PlantAFP> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0121,
-        edam:topic_0154,
-        edam:topic_0621,
-        edam:topic_0780,
-        edam:topic_3324 ;
-    sc:citation <https://doi.org/10.1007/S00726-019-02792-5>,
-        "pubmed:31612325" ;
-    sc:description """a curated database of plant-origin antifungal peptides.
-
-Emerging infectious diseases (EIDs) are a severe problem caused by fungi in human and plant species across the world. They pose a worldwide threat to food security as well as human health. Fungal infections are increasing now day by day worldwide, and the current antimycotic drugs are not effective due to the emergence of resistant strains. Therefore, it is an urgent need for the finding of new plant-origin antifungal peptides (PhytoAFPs). Huge numbers of peptides were extracted from different plant species which play a protective role against fungal infection. Hundreds of plant-origin peptides with antifungal activity have already been reported. So there is a requirement of a dedicated platform which systematically catalogs plant-origin peptides along with their antifungal properties.
-
-||| HOMEPAGE BROKEN!""" ;
-    sc:featureList edam:operation_0305,
-        edam:operation_3646,
-        edam:operation_3767 ;
-    sc:name "PlantAFP" ;
-    sc:url "http://bioinformatics.cimap.res.in/sharma/PlantAFP/" .
-
 <https://bio.tools/PlantAPAdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0621,
         edam:topic_0780,
@@ -59074,7 +47353,7 @@ Emerging infectious diseases (EIDs) are a severe problem caused by fungi in huma
     sc:url "http://www.bmibig.cn/plantAPAdb/" .
 
 <https://bio.tools/PlantAligDB> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0637,
@@ -59096,7 +47375,7 @@ Emerging infectious diseases (EIDs) are a severe problem caused by fungi in huma
     biotools:primaryContact "Filipe Pereira" .
 
 <https://bio.tools/PlantCircNet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0602,
         edam:topic_0659,
@@ -59115,7 +47394,7 @@ Emerging infectious diseases (EIDs) are a severe problem caused by fungi in huma
     sc:url "http://bis.zju.edu.cn/plantcircnet/index.php" .
 
 <https://bio.tools/PlantRegMap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0204,
         edam:topic_0749,
@@ -59132,7 +47411,7 @@ Emerging infectious diseases (EIDs) are a severe problem caused by fungi in huma
     sc:url "http://plantregmap.gao-lab.org/" .
 
 <https://bio.tools/PlantSimLab> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0780,
         edam:topic_2259,
@@ -59149,26 +47428,21 @@ Emerging infectious diseases (EIDs) are a severe problem caused by fungi in huma
 
 <https://bio.tools/Plant_DataDiscovery> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2353" ;
-            sc:name "Ontology data" ;
-            sc:sameAs "http://edamontology.org/data_2353" ],
+            sc:additionalType "http://edamontology.org/data_0968" ;
+            sc:name "Keyword" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0968" ;
-            sc:name "Keyword" ;
-            sc:sameAs "http://edamontology.org/data_0968" ] ;
+            sc:additionalType "http://edamontology.org/data_2353" ;
+            sc:name "Ontology data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2093" ;
-            sc:name "Data reference" ;
-            sc:sameAs "http://edamontology.org/data_2093" ],
+            sc:additionalType "http://edamontology.org/data_2093" ;
+            sc:name "Data reference" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2080" ;
-            sc:name "Database search results" ;
-            sc:sameAs "http://edamontology.org/data_2080" ],
+            sc:additionalType "http://edamontology.org/data_2080" ;
+            sc:name "Database search results" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0842" ;
-            sc:name "Identifier" ;
-            sc:sameAs "http://edamontology.org/data_0842" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0842" ;
+            sc:name "Identifier" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web API",
         "Web application",
@@ -59198,7 +47472,7 @@ The web portal indexes and makes findable any kind of plant data. Plant DataDisc
     biotools:primaryContact "Support service" .
 
 <https://bio.tools/Plant_Reactome> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0602,
         edam:topic_0780,
@@ -59215,7 +47489,7 @@ The web portal indexes and makes findable any kind of plant data. Plant DataDisc
     sc:url "https://plantreactome.gramene.org" .
 
 <https://bio.tools/Plant_Regulomics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0780,
         edam:topic_3173,
         edam:topic_3174 ;
@@ -59229,7 +47503,7 @@ The web portal indexes and makes findable any kind of plant data. Plant DataDisc
     sc:url "http://bioinfo.sibs.ac.cn/plant-regulomics" .
 
 <https://bio.tools/PlasClass> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0654,
         edam:topic_3174,
@@ -59244,7 +47518,7 @@ The web portal indexes and makes findable any kind of plant data. Plant DataDisc
     sc:url "https://github.com/Shamir-Lab/PlasClass" .
 
 <https://bio.tools/PlasmidFinder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
         edam:topic_0632,
@@ -59259,7 +47533,7 @@ The web portal indexes and makes findable any kind of plant data. Plant DataDisc
     sc:url "https://cge.cbs.dtu.dk/services/PlasmidFinder/" .
 
 <https://bio.tools/Plasmodesma> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0593,
         edam:topic_0780,
@@ -59281,14 +47555,14 @@ The web portal indexes and makes findable any kind of plant data. Plant DataDisc
 
 <https://bio.tools/Plass> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ] ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Nucleic acid sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3174,
@@ -59313,7 +47587,7 @@ The web portal indexes and makes findable any kind of plant data. Plant DataDisc
         <http://orcid.org/0000-0001-9642-8244> .
 
 <https://bio.tools/Plastid_Genome_Annotator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0780,
         edam:topic_3293,
@@ -59334,10 +47608,10 @@ The web portal indexes and makes findable any kind of plant data. Plant DataDisc
 
 <https://bio.tools/Platon> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3494" ;
-            sc:name "DNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3494" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "DNA sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0798 ;
     sc:author <http://orcid.org/0000-0003-4216-2721> ;
@@ -59355,7 +47629,7 @@ The web portal indexes and makes findable any kind of plant data. Plant DataDisc
     biotools:primaryContact <http://orcid.org/0000-0003-4216-2721> .
 
 <https://bio.tools/PleioNet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0625,
@@ -59373,7 +47647,7 @@ The web portal indexes and makes findable any kind of plant data. Plant DataDisc
     biotools:primaryContact "X. R. Gao" .
 
 <https://bio.tools/PlotTwist> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3304,
         edam:topic_3382 ;
@@ -59386,7 +47660,7 @@ The web portal indexes and makes findable any kind of plant data. Plant DataDisc
     sc:url "https://huygens.science.uva.nl/PlotTwist" .
 
 <https://bio.tools/Pluto> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2830,
         edam:topic_3474,
         edam:topic_3500,
@@ -59400,7 +47674,7 @@ The web portal indexes and makes findable any kind of plant data. Plant DataDisc
     sc:url "https://github.com/weipenegHU/Pluto" .
 
 <https://bio.tools/PmiREN> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0659,
         edam:topic_0780,
@@ -59417,7 +47691,7 @@ The web portal indexes and makes findable any kind of plant data. Plant DataDisc
     sc:url "http://www.pmiren.com/" .
 
 <https://bio.tools/PnGT> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0218,
         edam:topic_3474 ;
@@ -59432,19 +47706,8 @@ The web portal indexes and makes findable any kind of plant data. Plant DataDisc
     sc:softwareHelp <http://14.139.57.41/pngt/tutorial.html> ;
     sc:url "http://14.139.57.41/pngt/home.html" .
 
-<https://bio.tools/Pneumatron> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0780,
-        edam:topic_3399,
-        edam:topic_3810 ;
-    sc:citation <https://doi.org/10.1111/PCE.13647>,
-        "pubmed:31461536" ;
-    sc:description "> HOMEPAGE MISSING! | An automated pneumatic apparatus for estimating xylem vulnerability to embolism at high temporal resolution | Xylem vulnerability to embolism represents an important trait to determine species distribution patterns and drought resistance. However, estimating embolism resistance frequently requires time-consuming and ambiguous hydraulic lab measurements. Based on a recently developed pneumatic method, we present and test the \"Pneumatron\", a device that generates high time-resolution and fully automated vulnerability curves. Embolism resistance is estimated by applying a partial vacuum to extract air from an excised xylem sample, while monitoring the pressure change over time. Although the amount of gas extracted is strongly correlated with the percentage loss of xylem conductivity, validation of the Pneumatron was performed by comparison with the optical method for Eucalyptus camaldulensis leaves" ;
-    sc:featureList edam:operation_3196 ;
-    sc:name "Pneumatron" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31461536" .
-
 <https://bio.tools/Pneumocystis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_3174,
         edam:topic_3519,
@@ -59461,7 +47724,7 @@ The web portal indexes and makes findable any kind of plant data. Plant DataDisc
     sc:url "https://github.com/Yiheng323/clinical_diagnosis_of_pneumocystis.git" .
 
 <https://bio.tools/PointFinder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0199,
         edam:topic_0654,
@@ -59478,7 +47741,7 @@ The web portal indexes and makes findable any kind of plant data. Plant DataDisc
     sc:url "http://bitbucket.org/genomicepidemiology/pointfinder_db" .
 
 <https://bio.tools/PointSite> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
         edam:topic_0166,
@@ -59493,7 +47756,7 @@ The web portal indexes and makes findable any kind of plant data. Plant DataDisc
     sc:url "https://github.com/PointSite" .
 
 <https://bio.tools/PolyASite> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0659,
         edam:topic_0749,
@@ -59511,7 +47774,7 @@ A portal to the curated set of poly(A) sites that we inferred in the human, mous
     sc:url "https://polyasite.unibas.ch" .
 
 <https://bio.tools/PolyPharmacology_Browser> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3336,
@@ -59535,30 +47798,30 @@ A portal to the curated set of poly(A) sites that we inferred in the human, mous
 
 <https://bio.tools/PolySTest> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ] ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_3751" ;
+            sc:name "Expression data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3932" ;
-            sc:name "Q-value" ;
-            sc:sameAs "http://edamontology.org/data_3932" ],
+            sc:additionalType "http://edamontology.org/data_1636" ;
+            sc:encodingFormat "http://edamontology.org/format_3604" ;
+            sc:name "Heat map" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3905" ;
-            sc:name "Histogram" ;
-            sc:sameAs "http://edamontology.org/data_3905" ],
+            sc:additionalType "http://edamontology.org/data_0928" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Gene expression profile" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1636" ;
-            sc:name "Heat map" ;
-            sc:sameAs "http://edamontology.org/data_1636" ],
+            sc:additionalType "http://edamontology.org/data_3932" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Q-value" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1669" ;
-            sc:name "P-value" ;
-            sc:sameAs "http://edamontology.org/data_1669" ],
+            sc:additionalType "http://edamontology.org/data_3905" ;
+            sc:encodingFormat "http://edamontology.org/format_3604" ;
+            sc:name "Histogram" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0928" ;
-            sc:name "Gene expression profile" ;
-            sc:sameAs "http://edamontology.org/data_0928" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1669" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "P-value" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_2269,
         edam:topic_3520 ;
@@ -59572,30 +47835,16 @@ A portal to the curated set of poly(A) sites that we inferred in the human, mous
         "Mac" ;
     sc:url "http://computproteomics.bmb.sdu.dk/Apps/PolySTest" .
 
-<https://bio.tools/Polymerase_Structures> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0082,
-        edam:topic_0097,
-        edam:topic_3519 ;
-    sc:citation <https://doi.org/10.3390/V11080745>,
-        "pmcid:PMC6723251",
-        "pubmed:31412589" ;
-    sc:description "> LOW CONFIDENCE! | > CORRECT NAME OF TOOL COULD ALSO BE 'polymerases should', 'polymerase structure' | A Comprehensive Superposition of Viral Polymerase Structures | Submissions to the Community site are moderated and must be related to comparisons or analyses of polymerase structures. Uploaded documents must be provided on an Open Access basis and a Zenodo DOI will be minted if a DOI does not exist | A community to distribute and share large datasets or detailed analyses pertaining to the structures of nucleic acid polymerases" ;
-    sc:featureList edam:operation_2518,
-        edam:operation_3192,
-        edam:operation_3431 ;
-    sc:name "Polymerase Structures" ;
-    sc:url "http://www.zenodo.org/communities/pols/" .
-
 <https://bio.tools/PopDel> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1383" ;
-            sc:name "Sequence alignment (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1383" ] ;
+            sc:additionalType "http://edamontology.org/data_1383" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Sequence alignment (nucleic acid)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence variations" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3175,
         edam:topic_3325 ;
@@ -59614,7 +47863,7 @@ A portal to the curated set of poly(A) sites that we inferred in the human, mous
     biotools:primaryContact <https://orcid.org/0000-0002-3417-7504> .
 
 <https://bio.tools/PopInf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0199,
         edam:topic_0625,
@@ -59635,7 +47884,7 @@ Below are steps for running PopInf. PopInf is incorporated into the workflow sys
     sc:url "https://github.com/SexChrLab/PopInf" .
 
 <https://bio.tools/PopLDdecay> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_2885,
@@ -59656,7 +47905,7 @@ Below are steps for running PopInf. PopInf is incorporated into the workflow sys
     biotools:primaryContact "Wei-Ming He" .
 
 <https://bio.tools/PopNetD3> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2885,
         edam:topic_3796,
@@ -59678,7 +47927,7 @@ Below are steps for running PopInf. PopInf is incorporated into the workflow sys
     biotools:primaryContact "John Parkinson" .
 
 <https://bio.tools/PopTargs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0659,
         edam:topic_2885,
@@ -59698,7 +47947,7 @@ These are the scripts used to create the MySQL database that is used by PopTargs
     sc:url "https://poptargs.essex.ac.uk/" .
 
 <https://bio.tools/Portal> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0634,
         edam:topic_2885,
@@ -59717,10 +47966,10 @@ iPDGC PD MR Research Portal""" ;
 
 <https://bio.tools/Porter> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_3542 ;
@@ -59745,10 +47994,10 @@ iPDGC PD MR Research Portal""" ;
 
 <https://bio.tools/Porter5> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
@@ -59775,7 +48024,7 @@ iPDGC PD MR Research Portal""" ;
     sc:url "http://distilldeep.ucd.ie/porter/" .
 
 <https://bio.tools/Potpourri> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0749,
         edam:topic_2885,
@@ -59794,7 +48043,7 @@ Potpourri provides a MATLAB interface for ease of use. These instructions will g
     sc:url "https://github.com/gizemcaylak/Potpourri" .
 
 <https://bio.tools/PowerShell> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
         edam:topic_3520 ;
@@ -59808,7 +48057,7 @@ Potpourri provides a MATLAB interface for ease of use. These instructions will g
     sc:url "https://cpm.lumc.nl/yassene/powershell/" .
 
 <https://bio.tools/PrAnCER> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0611,
         edam:topic_3304,
         edam:topic_3401 ;
@@ -59821,7 +48070,7 @@ Potpourri provides a MATLAB interface for ease of use. These instructions will g
     sc:url "https://github.com/hayleybounds/PrAnCER" .
 
 <https://bio.tools/PrankWeb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Web service" ;
     sc:applicationSubCategory edam:topic_3474,
@@ -59843,7 +48092,7 @@ Potpourri provides a MATLAB interface for ease of use. These instructions will g
     biotools:primaryContact <https://orcid.org/0000-0003-4679-0557> .
 
 <https://bio.tools/PreSNO> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0601,
         edam:topic_0749,
@@ -59858,7 +48107,7 @@ PreSNO is only available to academic users""" ;
     sc:url "http://kurata14.bio.kyutech.ac.jp/PreSNO/" .
 
 <https://bio.tools/Pred-BVP-Unb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:citation <https://doi.org/10.1016/J.YGENO.2019.09.006>,
         "pubmed:31526842" ;
     sc:description "Fast prediction of bacteriophage Virion proteins using un-biased multi-perspective properties with recursive feature elimination | Bacteriophage virion proteins (BVPs) are bacterial viruses that have a great impact on different biological functions of bacteria. They are significantly used in genetic engineering and phage therapy applications. Correct identification of BVP through conventional pathogen methods are slow and expensive. Thus, designing a Bioinformatics predictor is urgently desirable to accelerate correct identification of BVPs within a huge volume of proteins. However, available prediction tools performance is inadequate due to the lack of useful feature representation and severe imbalance issue. In the present study, we propose an intelligent model, called Pred-BVP-Unb for discrimination of BVPs that employed three nominal sequences-driven descriptors, i.e" ;
@@ -59866,7 +48115,7 @@ PreSNO is only available to academic users""" ;
     sc:url "https://github.com/Muhammad-Arif-NUST/BVP_Pred_Unb" .
 
 <https://bio.tools/Pred-MutHTP> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0199,
         edam:topic_0736,
@@ -59888,7 +48137,7 @@ We have used 4 different type of datasets for developing the classification mode
     sc:url "https://www.iitm.ac.in/bioinfo/PredMutHTP/" .
 
 <https://bio.tools/PredPRBA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0154,
         edam:topic_2275 ;
@@ -59903,7 +48152,7 @@ We have used 4 different type of datasets for developing the classification mode
     sc:url "http://PredPRBA.denglab.org/" .
 
 <https://bio.tools/PredPSI-SVR> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_3320,
@@ -59923,17 +48172,8 @@ We have used 4 different type of datasets for developing the classification mode
     biotools:primaryContact "Huiying Zhao",
         "Yuedong Yang" .
 
-<https://bio.tools/Preprint> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0610,
-        edam:topic_3500,
-        edam:topic_3855 ;
-    sc:citation <https://doi.org/10.20944/PREPRINTS201908.0226.V1> ;
-    sc:description "> LOW CONFIDENCE! | Crowdsourcing and Analysing Wildlife Tourism Data from Photographs Shared on Social Media | The Multidisciplinary Preprint Platform | Preprints is a multidisciplinary preprint platform that accepts articles from all fields of science and technology, given that the preprint is scientifically sound and can be considered part of academic literature" ;
-    sc:name "Preprint" ;
-    sc:url "http://www.preprints.org" .
-
 <https://bio.tools/PrimerMiner> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0632,
         edam:topic_3050,
@@ -59949,7 +48189,7 @@ We have used 4 different type of datasets for developing the classification mode
     sc:url "https://github.com/VascoElbrecht/PrimerMiner" .
 
 <https://bio.tools/PriorCD> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3336,
         edam:topic_3375,
         edam:topic_3379 ;
@@ -59964,7 +48204,7 @@ We have used 4 different type of datasets for developing the classification mode
     sc:url "https://cran.r-project.org/web/packages/PriorCD" .
 
 <https://bio.tools/ProAffiMuSeq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0128,
         edam:topic_0154,
@@ -59981,7 +48221,7 @@ This server predicts protein-protein binding affinity change upon mutation using
     sc:url "https://web.iitm.ac.in/bioinfo2/proaffimuseq/" .
 
 <https://bio.tools/ProCarbDB> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0152,
         edam:topic_0154,
@@ -59999,28 +48239,8 @@ Carbohydrate-binding proteins play crucial roles across all viruses and organism
     sc:name "ProCarbDB" ;
     sc:url "http://www.procarbdb.science/procarb" .
 
-<https://bio.tools/ProDCoNN> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0082,
-        edam:topic_0130,
-        edam:topic_0736,
-        edam:topic_2828,
-        edam:topic_3474 ;
-    sc:citation <https://doi.org/10.1002/PROT.25868>,
-        "pubmed:31867753" ;
-    sc:description """Protein Design using a Convolutional Neural Network.
-
-Designing protein sequences that fold to a given three-dimensional structure has long been a challenging problem in computational structural biology with significant theoretical and practical implications. In this study, we first formulated this problem as predicting the residue type given the three-dimensional structural environment around the Cα atom of a residue, which is repeated for each residue of a protein. We designed a nine-layer three-dimensional deep convolutional neural network (CNN) that takes as input a gridded box with the atomic coordinates and types around a residue. Several CNN layers were designed to capture structure information at different scales, such as bond lengths, bond angles, torsion angles, and secondary structures.
-
-||| HOMEPAGE MISSING!""" ;
-    sc:featureList edam:operation_0267,
-        edam:operation_0303,
-        edam:operation_0474,
-        edam:operation_1844 ;
-    sc:name "ProDCoNN" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31867753" .
-
 <https://bio.tools/ProGeo-neo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
         edam:topic_2830 ;
@@ -60032,7 +48252,7 @@ Designing protein sequences that fold to a given three-dimensional structure has
     sc:url "https://github.com/kbvstmd/ProGeo-neo" .
 
 <https://bio.tools/ProPheno> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0218,
         edam:topic_0625,
@@ -60048,7 +48268,7 @@ Identifying protein-phenotype relations is of paramount importance for applicati
     sc:url "http://propheno.cs.montana.edu" .
 
 <https://bio.tools/ProSNEx> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0130,
         edam:topic_0154,
@@ -60073,7 +48293,7 @@ Identifying protein-phenotype relations is of paramount importance for applicati
         "Rasim Murat Aydinkal" .
 
 <https://bio.tools/ProSampler> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3169 ;
@@ -60094,7 +48314,7 @@ Identifying protein-phenotype relations is of paramount importance for applicati
         "Zhengchang Su" .
 
 <https://bio.tools/ProTargetMiner> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
         edam:topic_0154,
@@ -60119,7 +48339,7 @@ The ProTargetMiner R Shiny package is an automated online software for anticance
     sc:url "http://protargetminer.genexplain.com" .
 
 <https://bio.tools/ProTstab> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
         edam:topic_0130,
@@ -60146,28 +48366,8 @@ We trained a novel machine learning tool for prediction of protein stability, es
     sc:name "ProTstab" ;
     sc:url "http://structure.bmc.lu.se/ProTstab" .
 
-<https://bio.tools/ProbPFP> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0080,
-        edam:topic_0160,
-        edam:topic_2269 ;
-    sc:citation <https://doi.org/10.1186/S12859-019-3132-7>,
-        "pmcid:PMC6876095",
-        "pubmed:31760933" ;
-    sc:description """a multiple sequence alignment algorithm combining hidden Markov model optimized by particle swarm optimization with partition function.
-
-BACKGROUND:During procedures for conducting multiple sequence alignment, that is so essential to use the substitution score of pairwise alignment. To compute adaptive scores for alignment, researchers usually use Hidden Markov Model or probabilistic consistency methods such as partition function. Recent studies show that optimizing the parameters for hidden Markov model, as well as integrating hidden Markov model with partition function can raise the accuracy of alignment. The combination of partition function and optimized HMM, which could further improve the alignment's accuracy, however, was ignored by these researches. RESULTS:A novel algorithm for MSA called ProbPFP is presented in this paper. It intergrate optimized HMM by particle swarm with partition function.
-
-||| HOMEPAGE MISSING!""" ;
-    sc:featureList edam:operation_0300,
-        edam:operation_0491,
-        edam:operation_0492,
-        edam:operation_0496,
-        edam:operation_3478 ;
-    sc:name "ProbPFP" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31760933" .
-
 <https://bio.tools/ProcMod> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_3047 ;
     sc:citation <https://doi.org/10.1101/842070> ;
@@ -60180,31 +48380,8 @@ Réflexions autour de l'analyse de la variance basée sur une analyse type procu
     sc:name "ProcMod" ;
     sc:url "https://git.metabarcoding.org/lecasofts/ProcMod" .
 
-<https://bio.tools/Prodigy_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0199,
-        edam:topic_0602,
-        edam:topic_2640,
-        edam:topic_3173,
-        edam:topic_3577 ;
-    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTZ815>,
-        "pubmed:31681944" ;
-    sc:description """personalized prioritization of driver genes.
-
-Personalized prioritization of driver genes in cancer.
-
-The details of the method are described in Dinstag G. & Shamir R. PRODIGY: personalized prioritization of driver genes. bioRxiv (2018), https://www.biorxiv.org/content/early/2018/10/30/456723.
-
-This R package prioritize driver genes for individual cancer patients.
-
-||| NAME (Prodigy) SIMILAR TO (PUB. DIFFERENT) bio.tools/prodigy (PRODIGY)""" ;
-    sc:featureList edam:operation_0277,
-        edam:operation_3436,
-        edam:operation_3439 ;
-    sc:name "Prodigy_autogenerated" ;
-    sc:url "https://github.com/Shamir-Lab/PRODIGY" .
-
 <https://bio.tools/PromPDD> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
         edam:topic_2830,
@@ -60223,7 +48400,7 @@ PromPDD were developed based on the prediction models generated using the averag
     sc:url "http://www.immunoinformatics.net/PromPDD/" .
 
 <https://bio.tools/PromoterPredict> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0749,
         edam:topic_3398,
@@ -60238,34 +48415,8 @@ Machine Learning using Multivariate Linear Regression to Predict the Strength of
     sc:name "PromoterPredict" ;
     sc:url "https://github.com/PromoterPredict" .
 
-<https://bio.tools/ProphET_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0080,
-        edam:topic_0621,
-        edam:topic_0622,
-        edam:topic_0659 ;
-    sc:citation <https://doi.org/10.1371/JOURNAL.PONE.0223364>,
-        "pmcid:PMC6774505",
-        "pubmed:31577829" ;
-    sc:description """A stand-alone prophage sequence prediction tool with self-updating reference database.
-
-ProphET, Prophage Estimation Tool: a standalone prophage sequence prediction tool with self-updating reference database.
-
-João L. Reis-Cunha1,2, Daniella C. Bartholomeu2, Ashlee M. Earl1, Bruce W. Birren1, Gustavo C. Cerqueira1.
-
-ProphET is an open source software developed to be used in the Linux platform. Users are free to bundle executables and modify the script. However, we do not guarantee the efficiency and precision of predictions if modifications were performed in the script and dependencies.
-
-||| NAME (ProphET) SIMILAR TO (PUB. DIFFERENT) bio.tools/prophet (prophet).
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'CONCLUSIONS:ProphET', 'ProphET prophage estimation tool'""" ;
-    sc:featureList edam:operation_0464,
-        edam:operation_2421,
-        edam:operation_3216,
-        edam:operation_3431 ;
-    sc:name "ProphET_autogenerated" ;
-    sc:url "https://github.com/jaumlrc/ProphET" .
-
 <https://bio.tools/Prophage_Hunter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3293,
         edam:topic_3474,
@@ -60286,7 +48437,7 @@ ProphET is an open source software developed to be used in the Linux platform. U
     biotools:primaryContact <https://orcid.org/0000-0002-0507-7352> .
 
 <https://bio.tools/Prosit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -60308,7 +48459,7 @@ ProphET is an open source software developed to be used in the Linux platform. U
     biotools:primaryContact "Prof. Dr. Bernhard Küster" .
 
 <https://bio.tools/Prot-SpaM> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0121,
@@ -60331,7 +48482,7 @@ ProphET is an open source software developed to be used in the Linux platform. U
     biotools:primaryContact "Jendrik Schellhorn" .
 
 <https://bio.tools/ProtFus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0218,
         edam:topic_3512 ;
@@ -60345,7 +48496,7 @@ ProphET is an open source software developed to be used in the Linux platform. U
     sc:url "http://protfus.md.biu.ac.il/" .
 
 <https://bio.tools/ProtMapper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
         edam:topic_0218,
@@ -60368,7 +48519,7 @@ The Protmapper maps references to protein sites to the human reference sequence
     sc:url "https://github.com/indralab/protmapper" .
 
 <https://bio.tools/ProtMiscuity> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0821,
         edam:topic_3068,
@@ -60387,7 +48538,7 @@ Promiscuous behaviour in proteins and enzymes remains a challenging feature to u
     sc:url "http://ufq.unq.edu.ar/protmiscuity" .
 
 <https://bio.tools/ProtRank> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
         edam:topic_0154,
@@ -60406,25 +48557,8 @@ Python package for differential abundance analysis of proteomics data""" ;
     sc:name "ProtRank" ;
     sc:url "https://github.com/8medom/ProtRank" .
 
-<https://bio.tools/Protect-seq> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3168,
-        edam:topic_3179,
-        edam:topic_3295,
-        edam:topic_3318,
-        edam:topic_3512 ;
-    sc:citation <https://doi.org/10.1093/NAR/GKZ1150>,
-        "pubmed:31819993" ;
-    sc:description """genome-wide profiling of nuclease inaccessible domains reveals physical properties of chromatin.
-
-In metazoan cell nuclei, heterochromatin constitutes large chromatin domains that are in close contact with the nuclear lamina. These heterochromatin lamina-associated domains (LADs) domains are difficult to profile and warrants a simpler and direct method. Here we report a new method, Protect-seq, aimed at identifying regions of heterochromatin via resistance to nuclease degradation followed by next-generation sequencing (NGS). We performed Protect-seq on the human colon cancer cell line HCT-116 and observed overlap with previously curated LADs. We provide evidence that these protected regions are enriched for and can distinguish between the repressive histone modification H3K9me3, H3K9me2 and H3K27me3. Moreover, in human cells the loss of H3K9me3 leads to an increase in chromatin accessibility and loss of Protect-seq signal.
-
-||| HOMEPAGE MISSING!""" ;
-    sc:featureList edam:operation_0420 ;
-    sc:name "Protect-seq" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31819993" .
-
 <https://bio.tools/Protein-sol> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3306,
@@ -60441,19 +48575,8 @@ In metazoan cell nuclei, heterochromatin constitutes large chromatin domains tha
     sc:softwareHelp <https://protein-sol.manchester.ac.uk/about> ;
     sc:url "https://protein-sol.manchester.ac.uk/software" .
 
-<https://bio.tools/Protein_Classification_BIO699> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0130,
-        edam:topic_0602,
-        edam:topic_3474 ;
-    sc:citation <https://doi.org/10.1101/777177> ;
-    sc:description "> VERY_LOW CONFIDENCE! | > CORRECT NAME OF TOOL COULD ALSO BE 'mesophilic', 'centrality', 'thermophilic', 'edge-wise' | Supervised learning of protein thermal stability using sequence mining and distribution statistics of network centrality | Thermophilic-Mesophilic classification | Author: Ankit Sharma(BIO699) - MT16121 - ankit16121@iiitd.ac.in | Department of Computational Biology, Indraprastha Institute of Information Technology, IIIT-Delhi | 1. Supplementary_Data_1.xlsx - This file contains the complete list of thermophilic and mesophilic" ;
-    sc:featureList edam:operation_0267,
-        edam:operation_3798 ;
-    sc:name "Protein Classification BIO699" ;
-    sc:url "https://github.com/ankits0207/Protein_Classification_BIO699" .
-
 <https://bio.tools/Protein_Homeostasis_Database> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0121,
         edam:topic_0736 ;
@@ -60467,54 +48590,30 @@ In metazoan cell nuclei, heterochromatin constitutes large chromatin domains tha
 
 <https://bio.tools/Proteo3Dnet> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3021" ;
-            sc:name "UniProt accession" ;
-            sc:sameAs "http://edamontology.org/data_3021" ],
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-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ],
+            sc:additionalType "http://edamontology.org/data_3021" ;
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+            sc:name "UniProt accession" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3021" ;
-            sc:name "UniProt accession" ;
-            sc:sameAs "http://edamontology.org/data_3021" ],
+            sc:additionalType "http://edamontology.org/data_2600" ;
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         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1127" ;
-            sc:name "PDB ID" ;
-            sc:sameAs "http://edamontology.org/data_1127" ],
+            sc:additionalType "http://edamontology.org/data_1127" ;
+            sc:encodingFormat "http://edamontology.org/format_1957" ;
+            sc:name "PDB ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1127" ;
-            sc:name "PDB ID" ;
-            sc:sameAs "http://edamontology.org/data_1127" ],
+            sc:additionalType "http://edamontology.org/data_2628" ;
+            sc:encodingFormat "http://edamontology.org/format_1957" ;
+            sc:name "BioGRID interaction ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ],
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-            sc:identifier "http://edamontology.org/data_2628" ;
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-            sc:sameAs "http://edamontology.org/data_2628" ],
-        [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2628" ;
-            sc:name "BioGRID interaction ID" ;
-            sc:sameAs "http://edamontology.org/data_2628" ],
-        [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3021" ;
-            sc:name "UniProt accession" ;
-            sc:sameAs "http://edamontology.org/data_3021" ],
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-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3021" ;
+            sc:encodingFormat "http://edamontology.org/format_1957" ;
+            sc:name "UniProt accession" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_2275,
@@ -60530,7 +48629,7 @@ In metazoan cell nuclei, heterochromatin constitutes large chromatin domains tha
     sc:url "https://mobyle.rpbs.univ-paris-diderot.fr/cgi-bin/portal.py#forms::Proteo3Dnet" .
 
 <https://bio.tools/ProteoClade> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
         edam:topic_0154,
@@ -60553,7 +48652,7 @@ Free document hosting provided by Read the Docs""" ;
     sc:url "http://github.com/HeldLab/ProteoClade" .
 
 <https://bio.tools/ProteoRE> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -60574,10 +48673,10 @@ Free document hosting provided by Read the Docs""" ;
 
 <https://bio.tools/ProteoWorker> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3655" ;
+            sc:name "Mass spectrometry spectra" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -60602,7 +48701,7 @@ Modern app + open source algorithms + powerful analysis tools""" ;
     biotools:primaryContact <https://orcid.org/0000-0001-9243-5084> .
 
 <https://bio.tools/ProteomeHD> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
         edam:topic_2229,
@@ -60619,29 +48718,8 @@ Modern app + open source algorithms + powerful analysis tools""" ;
     sc:name "ProteomeHD" ;
     sc:url "http://www.proteomeHD.net" .
 
-<https://bio.tools/ProteomeXchange_consortium_2020> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0077,
-        edam:topic_0080,
-        edam:topic_0121,
-        edam:topic_0154,
-        edam:topic_3520 ;
-    sc:citation <https://doi.org/10.1093/NAR/GKZ984>,
-        "pubmed:31686107" ;
-    sc:description """enabling 'big data' approaches in proteomics.
-
-The ProteomeXchange Consortium was established to provide globally coordinated standard data submission and dissemination pipelines involving the main proteomics repositories, and to encourage open data policies in the field. Please review our Data Submission Guidelines , Reprocessed Guidelines; and PX Membership Agreement.
-
-||| COMMON LINK WITH (PUB. & NAME DIFFERENT) bio.tools/proteomexchange (PROTEOMEXCHANGE.ORG).
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'ProteomeXchange' (bio.tools/proteomexchange)""" ;
-    sc:featureList edam:operation_2421,
-        edam:operation_3431,
-        edam:operation_3860 ;
-    sc:name "ProteomeXchange consortium 2020" ;
-    sc:url "http://www.proteomexchange.org" .
-
 <https://bio.tools/Pseudo-nitzschia_multistriata_genome_portal> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0622 ;
@@ -60655,7 +48733,7 @@ The ProteomeXchange Consortium was established to provide globally coordinated s
     sc:url "http://bioinfo.szn.it/pmultistriata/" .
 
 <https://bio.tools/PsiZ> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3474 ;
     sc:citation <https://doi.org/10.3758/S13428-019-01285-3>,
         "pmcid:PMC6797663",
@@ -60666,7 +48744,7 @@ The ProteomeXchange Consortium was established to provide globally coordinated s
     sc:url "https://github.com/roads/psiz" .
 
 <https://bio.tools/PsyMuKB> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0128,
         edam:topic_0199,
@@ -60686,19 +48764,8 @@ PsyMuKB is a comprehensive knowledge base that links transcriptional and transla
     sc:name "PsyMuKB" ;
     sc:url "http://psymukb.net" .
 
-<https://bio.tools/PuMA_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0621,
-        edam:topic_0781,
-        edam:topic_3174 ;
-    sc:citation <https://doi.org/10.1101/736991> ;
-    sc:description "> NAME (PuMA) SIMILAR TO (PUB. DIFFERENT) bio.tools/puma (puma) | a papillomavirus genome annotation tool | Papillomavirus genome annotation tool | PuMA is now available to access through iMicrobe" ;
-    sc:featureList edam:operation_0362 ;
-    sc:license "GPL-3.0" ;
-    sc:name "PuMA_autogenerated" ;
-    sc:url "https://www.imicrobe.us/#/apps/puma" .
-
 <https://bio.tools/PubTator_Central> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0218,
         edam:topic_3303,
@@ -60722,7 +48789,7 @@ PsyMuKB is a comprehensive knowledge base that links transcriptional and transla
     biotools:primaryContact <https://orcid.org/0000-0002-8301-9553> .
 
 <https://bio.tools/PubTerm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0219,
         edam:topic_0621,
@@ -60744,7 +48811,7 @@ PsyMuKB is a comprehensive knowledge base that links transcriptional and transla
     biotools:primaryContact "Victor Trevino" .
 
 <https://bio.tools/PulmonDB> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0219,
         edam:topic_0634,
         edam:topic_3308 ;
@@ -60757,7 +48824,7 @@ PsyMuKB is a comprehensive knowledge base that links transcriptional and transla
     sc:url "http://pulmondb.liigh.unam.mx/" .
 
 <https://bio.tools/Punchline> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0621,
         edam:topic_0736,
@@ -60772,7 +48839,7 @@ PsyMuKB is a comprehensive knowledge base that links transcriptional and transla
     sc:url "https://github.com/LCrossman/punchline" .
 
 <https://bio.tools/PureseqTM> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -60792,7 +48859,7 @@ PsyMuKB is a comprehensive knowledge base that links transcriptional and transla
     sc:url "http://pureseqtm.predmp.com/" .
 
 <https://bio.tools/Py-EM> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0611,
         edam:topic_3385,
@@ -60814,7 +48881,7 @@ PsyMuKB is a comprehensive knowledge base that links transcriptional and transla
     sc:url "https://git.embl.de/schorb/pyem" .
 
 <https://bio.tools/PyAR> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0166,
         edam:topic_3047,
         edam:topic_3314 ;
@@ -60834,10 +48901,10 @@ PyAR stands for "Python program for aggregation and reaction\"""" ;
 
 <https://bio.tools/PyBDA> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2082" ;
-            sc:name "Matrix" ;
-            sc:sameAs "http://edamontology.org/data_2082" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2082" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Matrix" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3391 ;
     sc:citation <https://doi.org/10.1186/s12859-019-3087-8> ;
@@ -60855,7 +48922,7 @@ PyAR stands for "Python program for aggregation and reaction\"""" ;
     sc:url "https://pybda.readthedocs.io/en/latest/#" .
 
 <https://bio.tools/PyBSASeq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_2885,
@@ -60875,20 +48942,29 @@ PyAR stands for "Python program for aggregation and reaction\"""" ;
     sc:url "https://github.com/dblhlx/PyBSASeq" .
 
 <https://bio.tools/PyBioNetFit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2259,
         edam:topic_2269 ;
     sc:citation <https://doi.org/10.1016/J.ISCI.2019.08.045>,
+        <https://doi.org/10.1093/bioinformatics/btac004>,
         "pmcid:PMC6744527",
-        "pubmed:31522114" ;
-    sc:description "> COMMON LINK WITH (PUB. & NAME DIFFERENT) bio.tools/bionetfit (BIONETFIT.NAU.EDU) | PyBioNetFit and the Biological Property Specification Language | A fitting tool for biological models | PyBioNetFit (PyBNF) is a general-purpose program for parameterizing biological models specified using the BioNetGen rule-based modeling language (BNGL) or the Systems Biology Markup Language (SBML). PyBioNetFit offers a suite of parallelized metaheuristic algorithms (differential evolution, particle swarm optimization, scatter search) for parameter optimization. In addition to model parameterization, PyBioNetFit supports uncertainty quantification by bootstrapping and Bayesian approaches, and model checking. PyBioNetFit includes the Biological Property Specification Language (BPSL) for defining qualitative data for use in parameterization or checking. It runs on most Linux and macOS workstations as well on computing clusters" ;
+        "pubmed:31522114",
+        "pubmed:34986226" ;
+    sc:description "A general-purpose program for parameterizing biological models specified using the BioNetGen rule-based modeling language (BNGL) or the Systems Biology Markup Language (SBML)." ;
     sc:featureList edam:operation_3799 ;
+    sc:isAccessibleForFree true ;
+    sc:license "BSD-3-Clause" ;
     sc:name "PyBioNetFit" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://pybnf.readthedocs.io/en/latest/> ;
     sc:url "http://bionetfit.nau.edu/" .
 
 <https://bio.tools/PyCellBase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0749 ;
     sc:citation <https://doi.org/10.1186/s12859-019-2726-4>,
@@ -60907,7 +48983,7 @@ PyAR stands for "Python program for aggregation and reaction\"""" ;
     biotools:primaryContact "Daniel Perez-Gil" .
 
 <https://bio.tools/PyDFN3D> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:citation <https://doi.org/10.20944/PREPRINTS201911.0215.V1> ;
     sc:description """Discontinuous Boundary Elements for Fluid Flow Problems in Discrete Fracture Networks.
 
@@ -60916,7 +48992,7 @@ Modeling fluid flow in three-dimensional (3D) Discrete Fracture Networks (DFNs)
     sc:url "https://github.com/BinWang0213/PyDFN3D" .
 
 <https://bio.tools/PyFeat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0749,
@@ -60937,7 +49013,7 @@ Modeling fluid flow in three-dimensional (3D) Discrete Fracture Networks (DFNs)
     biotools:primaryContact "Rafsanjani Muhammod" .
 
 <https://bio.tools/PyGMQL> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3382,
         edam:topic_3489 ;
@@ -60959,7 +49035,7 @@ API for calling interactively the GMQL Engine from Python""" ;
     sc:url "https://github.com/DEIB-GECO/PyGMQL" .
 
 <https://bio.tools/PyLandStats> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_0769,
         edam:topic_3372 ;
@@ -60995,29 +49071,8 @@ Open-source Pythonic library to compute landscape metrics within the PyData stac
     sc:softwareHelp <https://pylandstats.readthedocs.io/> ;
     sc:url "https://anaconda.org/conda-forge/pylandstats" .
 
-<https://bio.tools/PyMOL_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0081,
-        edam:topic_3306,
-        edam:topic_3382 ;
-    sc:citation <https://doi.org/10.1002/PRO.3781>,
-        "pmcid:PMC6933860",
-        "pubmed:31710740" ;
-    sc:description """Shortcuts for faster image creation in PyMOL.
-
-The repository pymolschortucts contains the a collection of shortcuts that are loaded on startup of PyMOL. These shortcuts enable websearches from within PyMOL as well as many other convienent functions that make work in PyMOL more productive..
-
-||| NAME EQUAL TO (PUB. DIFFERENT) bio.tools/pymol.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'shortcuts'""" ;
-    sc:featureList edam:operation_0337,
-        edam:operation_2422,
-        edam:operation_3432 ;
-    sc:license "MIT" ;
-    sc:name "PyMOL_autogenerated" ;
-    sc:url "http://github.com/MooersLab/pymolshortcuts" .
-
 <https://bio.tools/PyParadigm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3343,
         edam:topic_3384,
         edam:topic_3444 ;
@@ -61032,7 +49087,7 @@ The repository pymolschortucts contains the a collection of shortcuts that are l
     sc:url "https://github.com/KnorrFG/pyparadigm" .
 
 <https://bio.tools/PyRETIS_2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0176,
         edam:topic_3325,
         edam:topic_3332 ;
@@ -61050,7 +49105,7 @@ PyRETIS is a Python library for rare event molecular simulations with emphasis o
     sc:url "http://www.pyretis.org" .
 
 <https://bio.tools/PyRadiomics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0625,
         edam:topic_0769,
@@ -61067,7 +49122,7 @@ PyRETIS is a Python library for rare event molecular simulations with emphasis o
     sc:url "https://github.com/Radiomics/pyradiomics" .
 
 <https://bio.tools/PyRanges> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0654 ;
     sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTZ615>,
         "pubmed:31373614" ;
@@ -61078,7 +49133,7 @@ PyRETIS is a Python library for rare event molecular simulations with emphasis o
     sc:url "https://pyranges.readthedocs.io/en/master/autoapi/pyranges/index.html" .
 
 <https://bio.tools/PyRates> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3304,
         edam:topic_3315,
         edam:topic_3474 ;
@@ -61112,7 +49167,7 @@ PyRates requires an installation of Python >=3.6.1""" ;
     sc:url "https://www.cbs.mpg.de/departments/neurophysics/software/pyrates" .
 
 <https://bio.tools/PyRod> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0176,
@@ -61131,7 +49186,7 @@ PyRates requires an installation of Python >=3.6.1""" ;
     sc:url "https://github.com/schallerdavid/pyrod" .
 
 <https://bio.tools/PySpacell> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2229,
         edam:topic_3172,
@@ -61151,7 +49206,7 @@ Technologies such as microscopy, sequential hybridization, and mass spectrometry
     sc:url "https://pypi.org/project/pySpacell/" .
 
 <https://bio.tools/PyVOL> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0166,
         edam:topic_3047 ;
@@ -61171,7 +49226,7 @@ PyVOL is a python library packaged into a PyMOL GUI for identifying protein bind
     sc:url "https://github.com/schlessingerlab/pyvol/" .
 
 <https://bio.tools/Pyntheon> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0199,
         edam:topic_0601 ;
@@ -61185,7 +49240,7 @@ PyVOL is a python library packaged into a PyMOL GUI for identifying protein bind
     sc:url "https://github.com/AhmedArslan/pyntheon" .
 
 <https://bio.tools/PypeAmplicon> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2885,
         edam:topic_3168 ;
@@ -61199,7 +49254,7 @@ PyVOL is a python library packaged into a PyMOL GUI for identifying protein bind
     sc:url "https://github.com/vitorpavinato/PypeAmplicon" .
 
 <https://bio.tools/Pypreclin> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3304,
         edam:topic_3384,
@@ -61213,7 +49268,7 @@ Non-human primate functional MRI (fMRI) is a growing field in neuroscience. Howe
     sc:url "https://github.com/neurospin/pypreclin" .
 
 <https://bio.tools/Python_Video_Annotator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0092 ;
     sc:description "PythonVideoAnnotator is a graphical application written in Python, to analyze and create notes for events in videos. It was developed with the aim of helping neuroscience and ethology researchers to identify animals’ behaviors based on the information extracted from the video." ;
@@ -61230,7 +49285,7 @@ Non-human primate functional MRI (fMRI) is a growing field in neuroscience. Howe
     sc:url "https://pythonvideoannotator.readthedocs.io" .
 
 <https://bio.tools/Q-HIU> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0593,
         edam:topic_0634 ;
@@ -61248,7 +49303,7 @@ Non-human primate functional MRI (fMRI) is a growing field in neuroscience. Howe
     sc:url "https://github.com/LobanovaEG-LobanovSV/Q-HIU" .
 
 <https://bio.tools/QA4ECV_FAPAR> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3393,
         edam:topic_3810 ;
     sc:citation <https://doi.org/10.3390/S19173662>,
@@ -61259,7 +49314,7 @@ Non-human primate functional MRI (fMRI) is a growing field in neuroscience. Howe
     sc:url "http://www.qa4ecv.eu" .
 
 <https://bio.tools/QBiC-Pred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0749,
@@ -61282,7 +49337,7 @@ Non-human primate functional MRI (fMRI) is a growing field in neuroscience. Howe
     biotools:primaryContact "Raluca Gordân" .
 
 <https://bio.tools/QCMAP> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -61299,19 +49354,8 @@ Non-human primate functional MRI (fMRI) is a growing field in neuroscience. Howe
         "Windows" ;
     sc:url "http://shiny.maths.usyd.edu.au/QCMAP/" .
 
-<https://bio.tools/QEVO> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3334,
-        edam:topic_3421,
-        edam:topic_3794 ;
-    sc:citation <https://doi.org/10.25259/SNI-45-2019>,
-        "pmcid:PMC6743702",
-        "pubmed:31528384" ;
-    sc:description "> HOMEPAGE MISSING! | A cadaveric study and first clinical experiences (case series) | Background:The use of endoscopes in neurosurgery is well established, but the integration of a full high definition signaling, 45° angled endoscopic tool into a digital surgical microscope, is new. We report our first experiences in a cadaveric study and a clinical case series using the new microinspection tool QEVO® that serves as a plug-in feature for the recently launched KINEVO 900 digital visualization platform (CARL ZEISS MEDITEC, Oberkochen, Germany). For illustration purposes, we offer video footage. Methods:The handling, workflow, and visualization patterns of the QEVO® microinspection tool were critically evaluated in cadaver specimens by simulating four standardized neurosurgical approaches: (1) pterional, (2) retrosigmoidal, (3) transsphenoidal, (4) and transcallosal" ;
-    sc:name "QEVO" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31528384" .
-
 <https://bio.tools/QGIS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3382,
         edam:topic_3489 ;
@@ -61326,7 +49370,7 @@ Non-human primate functional MRI (fMRI) is a growing field in neuroscience. Howe
     sc:url "http://qgis.osgeo.org" .
 
 <https://bio.tools/QHOT> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0625,
@@ -61347,27 +49391,8 @@ Non-human primate functional MRI (fMRI) is a growing field in neuroscience. Howe
     sc:url "http://www.stat.sinica.edu.tw/chkao/RQTL/download.htm" ;
     biotools:primaryContact "Chen-Hung Kao" .
 
-<https://bio.tools/QIPS> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3377,
-        edam:topic_3403,
-        edam:topic_3418 ;
-    sc:citation <https://doi.org/10.1017/CEM.2019.25>,
-        <https://doi.org/10.1097/ACM.0000000000002784>,
-        "pubmed:31608859",
-        "pubmed:31663959" ;
-    sc:description """How do emergency departments and emergency leaders catalyze positive change through quality improvement collaborations?.
-
-Jump-Starting Faculty Development in Quality Improvement and Patient Safety Education.
-
-In recent years, the importance of quality improvement and patient safety (QIPS) has become evident in healthcare in general, and in emergency medicine in particular. Though this is increasingly widely acknowledged, there is still a paucity of guiding resources as to how healthcare providers can obtain the knowledge and skills to initiate meaningful change. In order to help foster the development of QIPS, the following Resource Centre was created to guide training in the science of QIPS.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'QIPS teaching', 'teaching QIPS', 'Te4Q', 'Jump-Starting Faculty Development Quality Improvement Patient Safety Education'""" ;
-    sc:featureList edam:operation_3891 ;
-    sc:name "QIPS" ;
-    sc:url "https://caep.ca/qips-resources/" .
-
 <https://bio.tools/QMEANDisCo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0736,
         edam:topic_2275,
         edam:topic_3474 ;
@@ -61396,28 +49421,8 @@ Reference for the QMEAN scoring function:""" ;
     sc:name "QMEANDisCo" ;
     sc:url "https://swissmodel.expasy.org/qmean" .
 
-<https://bio.tools/QMJ> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3305,
-        edam:topic_3403,
-        edam:topic_3418,
-        edam:topic_3810 ;
-    sc:citation <https://doi.org/10.5339/QMJ.2019.QCCC.1>,
-        "pmcid:PMC6851948",
-        "pubmed:31763204" ;
-    sc:description """The inaugural Qatar Critical Care Conference with its Qatar Medical Journal Special Issue.
-
-Papers considered for publication in Qatar Medical Journal are those reporting original work, review articles and case reports that are particularly relevant to medicine in the broad sense. Editorials and Review articles are by invitation.Manuscripts are normally published in English but Arabic text can be considered if written in scientific format and language.Articles accepted for publication are subject to editorial revision.Journal indexed in PubMed Central &amp; Google Scholar.
-
-Papers considered for publication in Qatar Medical Journal are those reporting original work, review articles and case reports that are particularly relevant to medicine in the broad sense.
-
-Manuscripts are normally published in English but Arabic text can be considered if written in scientific format and language.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'Qatar Medical Journal'""" ;
-    sc:name "QMJ" ;
-    sc:url "https://www.qscience.com/content/journals/qmj" .
-
 <https://bio.tools/QPA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0202,
         edam:topic_0602,
         edam:topic_0625,
@@ -61433,7 +49438,7 @@ Manuscripts are normally published in English but Arabic text can be considered
     sc:url "https://github.com/github-gs/QPA" .
 
 <https://bio.tools/QPN> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3305,
         edam:topic_3337,
@@ -61455,18 +49460,8 @@ Congress of the “Société Francophone Posture, Équilibre et Locomotion” (S
     sc:name "QPN" ;
     sc:url "http://rpq-qpn.ca/en/" .
 
-<https://bio.tools/QPacker> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0154,
-        edam:topic_0821 ;
-    sc:citation <https://doi.org/10.1101/752485> ;
-    sc:description "> LOW CONFIDENCE! | > HOMEPAGE MISSING! | > CORRECT NAME OF TOOL COULD ALSO BE 'D-Wave', 'quantum', 'quantum-annealer-based', 'computers' | Designing Peptides on a Quantum Computer | Abstract Although a wide variety of quantum computers are currently being developed, actual computational results have been largely restricted to contrived, artificial tasks. Finding ways to apply quantum computers to useful, real-world computational tasks remains an active research area. Here we describe our mapping of the protein design problem to the D-Wave quantum annealer. We present a system whereby Rosetta, a state-of-the-art protein design software suite, interfaces with the D-Wave quantum processing unit to find amino acid side chain identities and conformations to stabilize a fixed protein backbone. Our approach, which we call the QPacker , uses a large side-chain rotamer library and the full Rosetta energy function, and in no way reduces the design task to a simpler format" ;
-    sc:featureList edam:operation_0480,
-        edam:operation_3216 ;
-    sc:name "QPacker" ;
-    sc:url "https://doi.org/10.1101/752485" .
-
 <https://bio.tools/QRISK3> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3335,
         edam:topic_3422,
@@ -61494,7 +49489,7 @@ This calculator is only valid if you do not already have a diagnosis of coronary
     sc:url "https://cran.r-project.org/web/packages/QRISK3/index.html" .
 
 <https://bio.tools/QResearch> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
@@ -61513,7 +49508,7 @@ This calculator is only valid if you do not already have a diagnosis of coronary
     sc:url "http://www.qresearch.org" .
 
 <https://bio.tools/QS-Net> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0637,
         edam:topic_3293 ;
@@ -61529,7 +49524,7 @@ This calculator is only valid if you do not already have a diagnosis of coronary
     sc:url "https://github.com/Tmyiri/QS-Net" .
 
 <https://bio.tools/QSAR> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3336,
         edam:topic_3375,
         edam:topic_3474 ;
@@ -61546,7 +49541,7 @@ There exist a new type of QSAR individual classifier that is an end-to-end neura
     sc:url "http://data.snu.ac.kr/QSAR/" .
 
 <https://bio.tools/QSAR-Co> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0602,
@@ -61564,19 +49559,8 @@ There exist a new type of QSAR individual classifier that is an end-to-end neura
     sc:url "https://sites.google.com/view/qsar-co" ;
     biotools:primaryContact "Pravin Ambure" .
 
-<https://bio.tools/QSARs> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0209,
-        edam:topic_2275,
-        edam:topic_3374 ;
-    sc:citation <https://doi.org/10.1101/727172> ;
-    sc:description "> VERY_LOW CONFIDENCE! | > HOMEPAGE MISSING! | > CORRECT NAME OF TOOL COULD ALSO BE 'cyclodextrin', 'QSARs cyclodextrin', 'drug', 'cyclodextrin affinity-based' | Using QSARs for predictions in drug delivery | Abstract Drug delivery research is an inherently empirical process, however high-throughput approaches could take advantage of understanding drug material interactions such as from electrostatic, hydrophobic, or other non-covalent interactions between therapeutic molecules and a drug delivery polymer. Cyclodextrin polymers have been investigated for drug delivery specifically due to their capacity to exploit this affinity interaction to change the rate of drug release. Testing drug candidates; however, for affinity is time-consuming, making computational predictions more effective. One option, molecular \"docking\" programs, provide predictions of affinity, but lack reliability, as their accuracy with cyclodextrin remains unverified experimentally" ;
-    sc:featureList edam:operation_0337,
-        edam:operation_0478 ;
-    sc:name "QSARs" ;
-    sc:url "https://doi.org/10.1101/727172" .
-
 <https://bio.tools/QSM> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3379,
         edam:topic_3400,
         edam:topic_3444 ;
@@ -61591,7 +49575,7 @@ There exist a new type of QSAR individual classifier that is an end-to-end neura
     sc:url "http://pre.weill.cornell.edu/mri/pages/qsm.html" .
 
 <https://bio.tools/QTL-BSA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0780,
         edam:topic_3673 ;
@@ -61605,7 +49589,7 @@ There exist a new type of QSAR individual classifier that is an end-to-end neura
     sc:url "https://github.com/sanlengjing/QTL-BSA" .
 
 <https://bio.tools/QTLbase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0625,
         edam:topic_3173,
@@ -61625,7 +49609,7 @@ QTLbase curates and compiles genome-wide QTL summary statistics for many human m
     sc:url "http://mulinlab.org/qtlbase" .
 
 <https://bio.tools/QTLpoly> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0625,
@@ -61646,7 +49630,7 @@ QTLbase curates and compiles genome-wide QTL summary statistics for many human m
     biotools:primaryContact "Guilherme da Silva Pereira" .
 
 <https://bio.tools/QUBEKit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0176,
         edam:topic_0209,
@@ -61661,7 +49645,7 @@ QTLbase curates and compiles genome-wide QTL summary statistics for many human m
     sc:url "https://github.com/cole-group/QuBeKit" .
 
 <https://bio.tools/QUBIC2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3170,
         edam:topic_3518 ;
@@ -61672,27 +49656,8 @@ QTLbase curates and compiles genome-wide QTL summary statistics for many human m
     sc:name "QUBIC2" ;
     sc:url "https://github.com/OSU-BMBL/QUBIC2" .
 
-<https://bio.tools/QUINT> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0634,
-        edam:topic_0769,
-        edam:topic_2830,
-        edam:topic_3382 ;
-    sc:citation <https://doi.org/10.3389/FNINF.2019.00075>,
-        "pmcid:PMC6901597",
-        "pubmed:31849633" ;
-    sc:description """Workflow for Quantification and Spatial Analysis of Features in Histological Images From Rodent Brain.
-
-Transgenic animal models are invaluable research tools for elucidating the pathways and mechanisms involved in the development of neurodegenerative diseases. Mechanistic clues can be revealed by applying labelling techniques such as immunohistochemistry or in situ hybridisation to brain tissue sections. Precision in both assigning anatomical location to the sections and quantifying labelled features is crucial for output validity, with a stereological approach or image-based feature extraction typically used. However, both approaches are restricted by the need to manually delineate anatomical regions. To circumvent this limitation, we present the QUINT workflow for quantification and spatial analysis of labelling in series of rodent brain section images based on available 3D reference atlases.
-
-||| HOMEPAGE MISSING!""" ;
-    sc:featureList edam:operation_3443,
-        edam:operation_3553,
-        edam:operation_3799 ;
-    sc:name "QUINT" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31849633" .
-
 <https://bio.tools/QresFEP> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0130,
         edam:topic_0154,
         edam:topic_0199 ;
@@ -61705,7 +49670,7 @@ Transgenic animal models are invaluable research tools for elucidating the pathw
     sc:url "https://github.com/qusers" .
 
 <https://bio.tools/QuAdTrim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:citation <https://doi.org/10.1101/2019.12.18.870642> ;
     sc:description """Overcoming computational bottlenecks in sequence quality control.
@@ -61718,22 +49683,8 @@ Abstract With the recent torrent of high throughput sequencing (HTS) data the ne
     sc:name "QuAdTrim" ;
     sc:url "https://bitbucket.org/arobinson/quadtrim" .
 
-<https://bio.tools/Quality_Threshold_Clustering_Molecular_Dynamics> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0154,
-        edam:topic_0176,
-        edam:topic_3306 ;
-    sc:citation <https://doi.org/10.1021/ACS.JCIM.9B00558>,
-        "pubmed:31532987" ;
-    sc:description "> VERY_LOW CONFIDENCE! | Quality Threshold Clustering of Molecular Dynamics | Clustering Molecular Dynamics trajectories is a common analysis that allows grouping together similar conformations. Several algorithms have been designed and optimized to perform this routine task and among them, Quality Threshold (QT) stands as a very attractive option. QT guarantees that in retrieved clusters, no pair of frames will have a similarity value greater than a specified threshold and hence a set of strongly correlated frames is obtained for each cluster. For more information about QT, please refer to Heyer et. al. work (Heyer, L. J.; Kruglyak, S.; Yooseph, S. Exploring Expression Data: Identification and Analysis of Coexpressed Genes. 1999, No. 213, 1106–1115. Genome Research) | Python Implementation of Quality Threshold Clustering for Molecular Dynamics | A python implementation of Heyer, 1999's Quality Threshold clustering algorithm specialized for molecular dynamics trajectories" ;
-    sc:featureList edam:operation_2476,
-        edam:operation_3432,
-        edam:operation_3891 ;
-    sc:license "GPL-3.0" ;
-    sc:name "Quality Threshold Clustering Molecular Dynamics" ;
-    sc:url "https://figshare.com/articles/Python_Implementation_of_Quality_Threshold_Clustering_for_Molecular_Dynamics/3813930" .
-
 <https://bio.tools/QuantiMus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3382,
         edam:topic_3474 ;
@@ -61749,7 +49700,7 @@ QuantiMus is a machine-learning based program used for histological analysis of
     sc:url "https://quantimus.github.io" .
 
 <https://bio.tools/QuantileBootstrap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_3336,
         edam:topic_3474 ;
@@ -61768,7 +49719,7 @@ QuantiMus is a machine-learning based program used for histological analysis of
     biotools:primaryContact "James A. Watson" .
 
 <https://bio.tools/Quantum> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3570 ;
     sc:citation <https://doi.org/10.1371/journal.pone.0208073>,
@@ -61786,7 +49737,7 @@ QuantiMus is a machine-learning based program used for histological analysis of
     sc:url "https://github.com/vsoftco/qpp" .
 
 <https://bio.tools/QuantumATK> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3314,
         edam:topic_3315,
         edam:topic_3318 ;
@@ -61799,7 +49750,7 @@ QuantiMus is a machine-learning based program used for histological analysis of
     sc:url "https://docs.quantumatk.com/index.html" .
 
 <https://bio.tools/QuartetScores> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0194,
         edam:topic_3293 ;
     sc:citation <https://doi.org/10.1093/SYSBIO/SYZ058>,
@@ -61814,14 +49765,14 @@ QuantiMus is a machine-learning based program used for histological analysis of
 
 <https://bio.tools/Query_Tabular> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3671" ;
-            sc:name "Text" ;
-            sc:sameAs "http://edamontology.org/data_3671" ] ;
+            sc:additionalType "http://edamontology.org/data_3671" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Text" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3671" ;
-            sc:name "Text" ;
-            sc:sameAs "http://edamontology.org/data_3671" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3671" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Text" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0769 ;
@@ -61839,7 +49790,7 @@ QuantiMus is a machine-learning based program used for histological analysis of
     sc:url "https://github.com/galaxyproject/tools-iuc/tree/master/tools/query_tabular" .
 
 <https://bio.tools/Quetzal> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_3855 ;
@@ -61857,28 +49808,31 @@ QuantiMus is a machine-learning based program used for histological analysis of
     biotools:primaryContact "Arnaud Becheler" .
 
 <https://bio.tools/QuickNII> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3304,
         edam:topic_3384,
         edam:topic_3444 ;
+    sc:author "Neural Systems Laboratory" ;
     sc:citation <https://doi.org/10.1371/JOURNAL.PONE.0216796>,
         "pmcid:PMC6541252",
         "pubmed:31141518" ;
     sc:description "Tool for user guided affine registration (anchoring) of 2D experimental image data, typically high resolution microscopic images, to 3D atlas reference space, facilitating data integration through standardized coordinate systems." ;
     sc:featureList edam:operation_3552 ;
+    sc:funder "Horizon 2020" ;
     sc:isAccessibleForFree true ;
     sc:license "CC-BY-NC-SA-4.0" ;
     sc:name "QuickNII" ;
     sc:operatingSystem "Linux",
         "Mac",
         "Windows" ;
-    sc:softwareHelp <https://www.nitrc.org/docman/view.php/1341/80848/QuickNII%20user%20guide> ;
+    sc:softwareHelp <https://ebrains.eu/service/quicknii-and-visualign/>,
+        <https://quicknii.readthedocs.io/> ;
     sc:url "https://www.nitrc.org/projects/quicknii" ;
     biotools:primaryContact <https://orcid.org/0000-0001-7899-906X> .
 
 <https://bio.tools/Quokka> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -61899,7 +49853,7 @@ QuantiMus is a machine-learning based program used for histological analysis of
     biotools:primaryContact "Fuyi Li" .
 
 <https://bio.tools/R-BIND> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0209,
         edam:topic_0632,
@@ -61917,19 +49871,8 @@ R-BIND: The RNA-Targeted BIoactive ligaNd Database. The dataset includes only bi
     sc:name "R-BIND" ;
     sc:url "https://rbind.chem.duke.edu" .
 
-<https://bio.tools/R-LiNK> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0622,
-        edam:topic_3384,
-        edam:topic_3419 ;
-    sc:citation <https://doi.org/10.1186/S40345-019-0156-X>,
-        "pmcid:PMC6760458",
-        "pubmed:31552554" ;
-    sc:description "> CORRECT NAME OF TOOL COULD ALSO BE 'Response Lithium Network' | Prospective cohort study of early biosignatures of response to lithium in bipolar-I-disorders | Optimizing response to lithium treatment through personalized evaluation of individuals with bipolar I disorder: the R-LiNK initiative | R-Link is a multinational study funded by the European Union’s Horizon 2020 Research and Innovation programme. R-Link involves eight European countries including France, United Kingdom, Denmark, Spain, Norway, Sweden, Germany and Italy" ;
-    sc:name "R-LiNK" ;
-    sc:url "http://www.r-link.eu.com/" .
-
 <https://bio.tools/R2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0621,
         edam:topic_0622,
@@ -61945,7 +49888,7 @@ R-BIND: The RNA-Targeted BIoactive ligaNd Database. The dataset includes only bi
     sc:url "http://r2.amc.nl" .
 
 <https://bio.tools/RAACBook> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
         edam:topic_0154,
@@ -61966,7 +49909,7 @@ A web server of reduced amino acid alphabet for sequence-dependent inference"""
     sc:url "http://bioinfor.imu.edu.cn/raacbook" .
 
 <https://bio.tools/RACE-SEQ> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_3168,
         edam:topic_3512 ;
@@ -61980,7 +49923,7 @@ A web server of reduced amino acid alphabet for sequence-dependent inference"""
     sc:url "https://github.com/pantastheo/RACE-SEQ-lite" .
 
 <https://bio.tools/RACS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_3169,
         edam:topic_3170,
@@ -62001,7 +49944,7 @@ RACS: Rapid Analysis of ChIP-Seq data for contig based genomes -- repository"""
     sc:url "https://gitrepos.scinet.utoronto.ca/public/?a=summary&p=RACS" .
 
 <https://bio.tools/RADAR-base> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API" ;
     sc:applicationSubCategory edam:topic_3419 ;
     sc:citation <https://doi.org/10.2196/11734>,
@@ -62014,38 +49957,8 @@ RACS: Rapid Analysis of ChIP-Seq data for contig based genomes -- repository"""
     sc:name "RADAR-base" ;
     sc:url "https://radar-base.org/index.php/documentation/" .
 
-<https://bio.tools/RADAR_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0099,
-        edam:topic_2640,
-        edam:topic_3170,
-        edam:topic_3295,
-        edam:topic_3308 ;
-    sc:citation <https://doi.org/10.1101/867903>,
-        <https://doi.org/10.1186/S13059-019-1915-9>,
-        "pmcid:PMC6927177",
-        "pubmed:31870409" ;
-    sc:description """Differential analysis of MeRIP-seq data with a random effect model.
-
-The project for analyzing differential methylation of MeRIP-seq data.
-
-RNA methylAtion Differential Analysis in R >> RADAR.
-
-The following links are codes used to generate plots/figures in the manuscript “Count-based differential analysis of MeRIP-seq data with a random effect model”. Session information (including package versions) are listed at the end of each page.
-
-This R Markdown site was created with workflowr.
-
-||| NAME EQUAL TO (PUB. DIFFERENT) bio.tools/radar""" ;
-    sc:featureList edam:operation_0244,
-        edam:operation_0308,
-        edam:operation_2495,
-        edam:operation_3204 ;
-    sc:license "GPL-3.0" ;
-    sc:name "RADAR_autogenerated" ;
-    sc:softwareHelp <https://scottzijiezhang.github.io/RADARmanual/Reproducible.html> ;
-    sc:url "https://github.com/scottzijiezhang/RADAR" .
-
 <https://bio.tools/RADProc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3673,
@@ -62065,7 +49978,7 @@ This R Markdown site was created with workflowr.
     biotools:primaryContact "Dr. Beiko's Lab" .
 
 <https://bio.tools/RAEdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3071,
@@ -62087,13 +50000,13 @@ This R Markdown site was created with workflowr.
     biotools:primaryContact "Dr. Yousong Peng" .
 
 <https://bio.tools/RAG> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0097,
         edam:topic_0099 ;
     sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTZ611>,
         "pubmed:31373604" ;
-    sc:description "> HOMEPAGE BROKEN! | > CORRECT NAME OF TOOL COULD ALSO BE 'RAG-Web' | RNA Structure Prediction/Design using RNA-As-Graphs | MOTIVATION:We launch a webserver for RNA structure prediction and design corresponding to tools developed using our RNA-As-Graphs (RAG) approach. RAG uses coarse-grained tree graphs to represent RNA secondary structure, allowing the application of graph theory to analyze and advance RNA structure discovery. Our webserver consists of three modules: (a) RAG Sampler: samples tree graph topologies from an RNA secondary structure to predict corresponding tertiary topologies, (b) RAG Builder: builds three-dimensional atomic models from candidate graphs generated by RAG Sampler, and (c) RAG Designer: designs sequences that fold onto novel RNA motifs (described by tree graph topologies). Results analyses are performed for further assessment selection. The Results page provides links to download results and indicates possible errors encountered" ;
+    sc:description "Webserver for RNA structure prediction and design corresponding to tools developed using our RNA-As-Graphs (RAG) approach." ;
     sc:featureList edam:operation_0278,
         edam:operation_0502,
         edam:operation_2441 ;
@@ -62101,7 +50014,7 @@ This R Markdown site was created with workflowr.
     sc:url "http://tslab10.chem.nyu.edu:7000/ragtop/" .
 
 <https://bio.tools/RAM-ESVM> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_3168,
         edam:topic_3308 ;
@@ -62113,7 +50026,7 @@ This R Markdown site was created with workflowr.
     sc:url "http://server.malab.cn/RAM-ESVM/" .
 
 <https://bio.tools/RAMPAGE> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_0798,
         edam:topic_3277 ;
@@ -62129,7 +50042,7 @@ This R Markdown site was created with workflowr.
     sc:url "https://github.com/kepbod/rampage_alu" .
 
 <https://bio.tools/RANKS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0634,
@@ -62146,30 +50059,17 @@ This R Markdown site was created with workflowr.
     sc:url "https://cran.r-project.org/package=RANKS" ;
     biotools:primaryContact "Giorgio Valentini" .
 
-<https://bio.tools/RAPID_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3376,
-        edam:topic_3405,
-        edam:topic_3418 ;
-    sc:citation <https://doi.org/10.1111/IPD.12569>,
-        "pubmed:31411790" ;
-    sc:description "> NAME EQUAL TO (PUB. DIFFERENT) bio.tools/rapid | Reporting stAndards for research in PedIatric Dentistry (RAPID) | Rapid Research in pediatric Dentistry | \"Reporting standards for research in Pediatric Dentistry\" (RAPID) is an initiative that provides evidence-based recommendations to improve the reporting quality of research in Pediatric Dentistry. The RAPID statement facilitates complete and transparent reporting by minimizing biases arising from incomplete or inadequate reporting of studies in Pediatric Dentistry" ;
-    sc:name "RAPID_autogenerated" ;
-    sc:url "http://www.rapid-statement.org" .
-
 <https://bio.tools/RAPPAS> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ],
+            sc:additionalType "http://edamontology.org/data_3272" ;
+            sc:name "Species tree" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3494" ;
-            sc:name "DNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3494" ],
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:name "Protein sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3272" ;
-            sc:name "Species tree" ;
-            sc:sameAs "http://edamontology.org/data_3272" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:name "DNA sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0637,
@@ -62188,26 +50088,21 @@ This R Markdown site was created with workflowr.
 
 <https://bio.tools/RARe> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2353" ;
-            sc:name "Ontology data" ;
-            sc:sameAs "http://edamontology.org/data_2353" ],
+            sc:additionalType "http://edamontology.org/data_2353" ;
+            sc:name "Ontology data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0968" ;
-            sc:name "Keyword" ;
-            sc:sameAs "http://edamontology.org/data_0968" ] ;
+            sc:additionalType "http://edamontology.org/data_0968" ;
+            sc:name "Keyword" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2080" ;
-            sc:name "Database search results" ;
-            sc:sameAs "http://edamontology.org/data_2080" ],
+            sc:additionalType "http://edamontology.org/data_2080" ;
+            sc:name "Database search results" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0842" ;
-            sc:name "Identifier" ;
-            sc:sameAs "http://edamontology.org/data_0842" ],
+            sc:additionalType "http://edamontology.org/data_0842" ;
+            sc:name "Identifier" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2093" ;
-            sc:name "Data reference" ;
-            sc:sameAs "http://edamontology.org/data_2093" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2093" ;
+            sc:name "Data reference" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web API",
         "Web application",
@@ -62234,81 +50129,8 @@ RARe search is an implementation of DataDiscovery.""" ;
     sc:url "https://urgi.versailles.inrae.fr/rare/" ;
     biotools:primaryContact "Support service" .
 
-<https://bio.tools/RASCS> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3303,
-        edam:topic_3382 ;
-    sc:citation <https://doi.org/10.1002/LSM.23164>,
-        "pubmed:31571262" ;
-    sc:description """Retrieval of Absorption or Scattering Coefficient Spectrum (RASCS) Program.
-
-BACKGROUND AND OBJECTIVES:Optical properties characterize light propagation in turbid media, such as tissue. Recovery of optical properties is of great importance in a wide variety of biomedical applications, including both therapeutic treatments and diagnosis. Most of the available methodologies are well established, however, these are not optimized for real-time measurements. STUDY DESIGN MATERIALS AND METHODS:Optical properties are recovered using the Inverse Adding Doubling program from reflectance measurements measured with an integrating sphere and light in the visible range. A user-friendly interface was programmed in Visual Studio and the libraries of a particular spectrophotometer were used.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'Retrieval Absorption Scattering Coefficient Spectrum Program', 'optical', 'OBJECTIVES:Optical', 'METHODS:Optical'""" ;
-    sc:featureList edam:operation_2422,
-        edam:operation_3359,
-        edam:operation_3435 ;
-    sc:name "RASCS" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31571262" .
-
-<https://bio.tools/RASDAMAN> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0102,
-        edam:topic_3382,
-        edam:topic_3489 ;
-    sc:citation <https://doi.org/10.7287/PEERJ.PREPRINTS.2232V2> ;
-    sc:description """A web-based interactive 2D and 3D GIS application to find the best place in a city, using open data and open source software.
-
-rasdaman, the Big Data Analytics Server.
-
-fast, flexible, scalable, standards-based, secure.
-
-...and clients, clients, clients.
-
-boosted by query optimization, parallelization, federation, heterogeneous hardware.
-
-Check out the Hall of Fame of rasdaman-enabled services!.
-
-rasdaman ("raster data manager") is the pioneer and leading Array Analytics Engine, for scalable, actionable datacubes in science, engineering, and beyond.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'City Focus', 'city', 'WorldWind'""" ;
-    sc:featureList edam:operation_0224,
-        edam:operation_0337,
-        edam:operation_3435 ;
-    sc:name "RASDAMAN" ;
-    sc:url "http://www.rasdaman.com" .
-
-<https://bio.tools/RASH> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0089,
-        edam:topic_0749,
-        edam:topic_3068,
-        edam:topic_3315,
-        edam:topic_3673 ;
-    sc:citation <https://doi.org/10.7287/PEERJ.PREPRINTS.2513V2> ;
-    sc:description """a Web-first format for HTML-based scholarly articles.
-
-Research Articles in Simplified HTML (RASH) Framework includes a markup language defined as a subset of HTML+RDF for writing scientific articles, and related tools to convert it into different formats, to extract data from it, etc.
-
-How to cite: Peroni, S., Osborne, F., Di Iorio, A., Nuzzolese, A. G., Poggi, F., Vitali, F., Motta, E. (2017). Research Articles in Simplified HTML: a Web-first format for HTML-based scholarly articles. PeerJ Computer Science 3: e132. e2513. DOI: https://doi.org/10.7717/peerj-cs.132.
-
-# rash-check.sh - fully check RASH documents.
-
-The odt2rash.jar executable converts an ODT file into the RASH format.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'Research Articles Simplified HTML', 'SAVE-SD'""" ;
-    sc:featureList edam:operation_0337,
-        edam:operation_2422,
-        edam:operation_3778,
-        edam:operation_3891 ;
-    sc:license "ISC" ;
-    sc:name "RASH" ;
-    sc:softwareHelp <http://rawgit.com/essepuntato/rash/master/documentation/index.html#metadata>,
-        <http://rawgit.com/essepuntato/rash/master/documentation/rash-in-docx.docx>,
-        <http://rawgit.com/essepuntato/rash/master/documentation/rash-in-odt.odt> ;
-    sc:url "https://w3id.org/people/essepuntato/papers/rash-peerj2016.html" .
-
 <https://bio.tools/RASflow> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
         edam:topic_0203,
@@ -62325,19 +50147,8 @@ RASflow: RNA-Seq Analysis Snakemake Workflow""" ;
     sc:name "RASflow" ;
     sc:url "https://github.com/zhxiaokang/RASflow" .
 
-<https://bio.tools/RATEST> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0219 ;
-    sc:citation <https://doi.org/10.1145/3299869.3320236>,
-        "pmcid:PMC6684020",
-        "pubmed:31388247" ;
-    sc:description "> HOMEPAGE MISSING! | Explaining Wrong Relational Queries Using Small Examples | We present a system called RATEST, designed to help debug relational queries against reference queries and test database instances. In many applications, e.g., classroom learning and regression testing, we test the correctness of a user query Q by evaluating it over a test database instance D and comparing its result with that of evaluating a reference (correct) query Q 0 over D. If Q(D) differs from Q 0(D), the user knows Q is incorrect. However, D can be large (often by design), which makes debugging Q difficult. The key idea behind RATEST is to show the user a much smaller database instance D' ⊆ D, which we call a counterexample, such that Q(D') ≠ Q 0(D'). RATEST builds on data provenance and constraint solving, and employs a suite of techniques to support, at interactive speed, complex queries involving differences and group-by aggregation" ;
-    sc:featureList edam:operation_0224,
-        edam:operation_3436 ;
-    sc:name "RATEST" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31388247" .
-
 <https://bio.tools/RAbHIT> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0654,
@@ -62361,7 +50172,7 @@ RASflow: RNA-Seq Analysis Snakemake Workflow""" ;
     biotools:primaryContact "Ayelet Peres" .
 
 <https://bio.tools/RAxML-NG> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0194,
@@ -62382,22 +50193,8 @@ RASflow: RNA-Seq Analysis Snakemake Workflow""" ;
     sc:url "https://raxml-ng.vital-it.ch/" ;
     biotools:primaryContact "Vital-IT helpdesk" .
 
-<https://bio.tools/RBM_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3315,
-        edam:topic_3382,
-        edam:topic_3474 ;
-    sc:citation <https://doi.org/10.1109/TIP.2019.2946455>,
-        "pubmed:31634130" ;
-    sc:description """Unsupervised Rotation Factorization in Restricted Boltzmann Machines.
-
-Finding suitable image representations for the task at hand is critical in computer vision. Different approaches extending the original Restricted Boltzmann Machine (RBM) model have recently been proposed to offer rotation-invariant feature learning. In this paper, we present an extended novel RBM that learns rotation invariant features by explicitly factorizing for rotation nuisance in 2D image inputs within an unsupervised framework. While the goal is to learn invariant features, our model infers an orientation per input image during training, using information related to the reconstruction error. The training process is regularised by a Kullback-Leibler divergence, offering stability and consistency.
-
-||| NAME EQUAL TO (PUB. DIFFERENT) bio.tools/rbm""" ;
-    sc:name "RBM_autogenerated" ;
-    sc:url "https://bitbucket.org/tuttoweb/rotinvrbm" .
-
 <https://bio.tools/RBP-Maps> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3320,
         edam:topic_3512,
@@ -62418,7 +50215,7 @@ Finding suitable image representations for the task at hand is critical in compu
     biotools:primaryContact "Yeo LAB" .
 
 <https://bio.tools/RBPome> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
         edam:topic_0602,
@@ -62435,7 +50232,7 @@ Finding suitable image representations for the task at hand is critical in compu
     sc:url "http://shiny.cecad.uni-koeln.de:3838/celegans_rbpome" .
 
 <https://bio.tools/RBV> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_3518,
         edam:topic_3577,
@@ -62457,7 +50254,7 @@ RBV: Read Balance Validator is a corroborates copy number variants (CNV) from wh
     sc:url "https://github.com/whitneywhitford/RBV" .
 
 <https://bio.tools/RCMF> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0634,
         edam:topic_0749 ;
@@ -62470,7 +50267,7 @@ RBV: Read Balance Validator is a corroborates copy number variants (CNV) from wh
     sc:url "https://github.com/cuizhensdws/L21-GRMF" .
 
 <https://bio.tools/RCSM> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0202,
         edam:topic_0203,
         edam:topic_3295,
@@ -62485,40 +50282,8 @@ RBV: Read Balance Validator is a corroborates copy number variants (CNV) from wh
     sc:name "RCSM" ;
     sc:url "https://github.com/Jasonlinchina/RCSM" .
 
-<https://bio.tools/RCorp> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0634,
-        edam:topic_3068,
-        edam:topic_3322,
-        edam:topic_3377,
-        edam:topic_3474 ;
-    sc:citation <https://doi.org/10.1186/S12911-019-0936-3>,
-        "pmcid:PMC6894109",
-        "pubmed:31801523" ;
-    sc:description """a resource for chemical disease semantic extraction in Chinese.
-
-BACKGROUND:To robustly identify synergistic combinations of drugs, high-throughput screenings are desirable. It will be of great help to automatically identify the relations in the published papers with machine learning based tools. To support the chemical disease semantic relation extraction especially for chronic diseases, a chronic disease specific corpus for combination therapy discovery in Chinese (RCorp) is manually annotated. METHODS:In this study, we extracted abstracts from a Chinese medical literature server and followed the annotation framework of the BioCreative CDR corpus, with the guidelines modified to make the combination therapy related relations available. An annotation tool was incorporated to the standard annotation process.
-
-||| HOMEPAGE MISSING!""" ;
-    sc:featureList edam:operation_3280,
-        edam:operation_3625,
-        edam:operation_3778 ;
-    sc:name "RCorp" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31801523" .
-
-<https://bio.tools/RDF> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0089,
-        edam:topic_0218,
-        edam:topic_3070 ;
-    sc:citation <https://doi.org/10.12688/F1000RESEARCH.18238.1> ;
-    sc:description "> VERY_LOW CONFIDENCE! | > COMMON LINK WITH (PUB. & NAME DIFFERENT) bio.tools/biosemantics_suite (BIOSEMANTICS.ORG) | > CORRECT NAME OF TOOL COULD ALSO BE 'BioHackathon series 2013 2014' | improvements of semantic interoperability in life science data and services | Here is the list of urls that will return RDF content" ;
-    sc:featureList edam:operation_2422,
-        edam:operation_3280,
-        edam:operation_3761 ;
-    sc:name "RDF" ;
-    sc:url "http://rdf.biosemantics.org" .
-
 <https://bio.tools/RDFIO> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "SPARQL endpoint" ;
     sc:applicationSubCategory edam:topic_3071,
         edam:topic_3172,
@@ -62538,28 +50303,8 @@ BACKGROUND:To robustly identify synergistic combinations of drugs, high-throughp
         <https://www.mediawiki.org/wiki/Extension:RDFIO> ;
     sc:url "https://pharmb.io/project/rdfio/" .
 
-<https://bio.tools/RDF_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0089,
-        edam:topic_2258,
-        edam:topic_2885,
-        edam:topic_3489 ;
-    sc:citation <https://doi.org/10.7287/PEERJ.PREPRINTS.185V2> ;
-    sc:description """Accessing biological data in R with semantic web technologies.
-
-The EBI RDF Platform aims to bring together the efforts of a number of EMBL-EBI resources that provide access to their data using Semantic Web technologies. It provides a unified way to query across resources using the W3C SPARQL query language. We welcome comments or questions via email rdf-req[at]ebi.ac.uk or github.
-
-Linked Open Data platform for EBI data.
-
-||| NAME EQUAL TO (PUB. DIFFERENT) bio.tools/RDF.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'Resource Description Framework'""" ;
-    sc:featureList edam:operation_0224 ;
-    sc:license "GPL-3.0" ;
-    sc:name "RDF_autogenerated" ;
-    sc:url "http://cran.r-project.org/web/packages/rrdf/" .
-
 <https://bio.tools/RDKit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0209,
         edam:topic_2258,
         edam:topic_3047 ;
@@ -62571,30 +50316,8 @@ Linked Open Data platform for EBI data.
     sc:name "RDKit" ;
     sc:url "http://www.rdkit.org" .
 
-<https://bio.tools/RDTs_Cryptosporidium_spp_Giardia_duodenalis> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0632,
-        edam:topic_2885,
-        edam:topic_3305,
-        edam:topic_3324,
-        edam:topic_3519 ;
-    sc:citation <https://doi.org/10.1186/S40249-019-0609-6>,
-        "pmcid:PMC6882336",
-        "pubmed:31775877" ;
-    sc:description """Performance of three rapid diagnostic tests for the detection of Cryptosporidium spp. and Giardia duodenalis in children with severe acute malnutrition and diarrhoea.
-
-BACKGROUND:There is significant need for accurate diagnostic tools for Cryptosporidium spp. and Giardia duodenalis infections in resource limited countries where diarrhoeal disease caused by these parasites is often prevalent. The present study assessed the diagnostic performance of three commercially available rapid diagnostic tests (RDTs) based on faecal-antigen detection for Cryptosporidium spp. and or G. duodenalis infections in stool samples of children admitted with severe acute malnutrition (SAM) and diarrhoea. An established multiplex PCR was used as reference test.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'Cryptosporidium spp Giardia duodenalis', 'RDT Cryptosporidium spp Malawi', 'RDTs Cryptosporidium spp Giardia', 'Cryptosporidium spp'""" ;
-    sc:featureList edam:operation_0346,
-        edam:operation_3196,
-        edam:operation_3435 ;
-    sc:name "RDTs Cryptosporidium spp Giardia duodenalis" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31775877" .
-
 <https://bio.tools/RDXplorer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_3673 ;
     sc:citation <https://doi.org/10.1371/JOURNAL.PCBI.1007069>,
@@ -62615,43 +50338,8 @@ Note: (matuskalas): Lumpy (or lumpy-sv) is a completely different tool, atm miss
     sc:url "https://sourceforge.net/projects/rdxplorer/" ;
     biotools:primaryContact "Makarov V." .
 
-<https://bio.tools/RE-AIM> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3318,
-        edam:topic_3376,
-        edam:topic_3403 ;
-    sc:citation <https://doi.org/10.1089/JPM.2019.0142>,
-        <https://doi.org/10.1590/1413-81232018249.23502017>,
-        "pubmed:31486723",
-        "pubmed:31508762" ;
-    sc:description "> MEDIUM CONFIDENCE! | > HOMEPAGE MISSING! | > CORRECT NAME OF TOOL COULD ALSO BE 'ACP interventions', 'PREPARE', 'ACP', 'three-site' | [Assistance programs for physical activity in Brazilian schools | Population-Based Pragmatic Trial of Advance Care Planning in Primary Care in the University of California Health System | The analysis of physical activity (PA) assistance programs is of major importance to ensure progress in the area. The Reach, Efficacy, Adoption, Implementation and Maintenance (RE-AIM) tool has been broadly disseminated in the literature. This study set out to identify PA assistance programs among Brazilian students and analyze them using the RE-AIM tool. The search was conducted in the Lilacs, SportDiscus, SciELO, Scopus, Web of Science, EBSCOhot, PsycINFO and PubMed databases. After thoroughly researching titles, abstracts and studies, 15 articles (seven PA assistance programs) were included" ;
-    sc:featureList edam:operation_3891 ;
-    sc:name "RE-AIM" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31508762" .
-
-<https://bio.tools/RE-AIM_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3077,
-        edam:topic_3305,
-        edam:topic_3419 ;
-    sc:citation <https://doi.org/10.3389/FPUBH.2019.00345>,
-        "pmcid:PMC6883916",
-        "pubmed:31824911" ;
-    sc:description """Use of the RE-AIM Framework for Program Planning and Evaluation in Clinical and Community Settings.
-
-RE-AIM – Reach Effectiveness Adoption Implementation Maintenance.
-
-This webinar, titled “Using the RE-AIM Model in Faith-based Dissemination & Implementation Study”, was presented by Dr. Sara Wilcox from the Arnold School of Public Health, at the University of South Carolina. Dr. Wilcox’s unique and engaging talk gave insight into an intervention that is being both disseminated and implemented within faith-based communities in South Carolina. Dr. Wilcox discusses her use of RE-AIM and how the framework was able to both help in the planning, evaluation, and aid in the development of future steps in her work.
-
-For this month, we are bringing you our most recent webinar that occurred in December 2019. The last webinar of the decade!.
-
-||| NAME EQUAL TO (PUB. DIFFERENT) bio.tools/RE-AIM.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'RE-AIM Real World'""" ;
-    sc:featureList edam:operation_3799 ;
-    sc:name "RE-AIM_autogenerated" ;
-    sc:url "http://www.re-aim.org" .
-
 <https://bio.tools/REFUGE_Challenge> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3360,
         edam:topic_3384,
         edam:topic_3417,
@@ -62667,27 +50355,8 @@ The goal of the Retinal Fundus Glaucoma Challenge (REFUGE) is to evaluate and co
     sc:name "REFUGE Challenge" ;
     sc:url "https://refuge.grand-challenge.org" .
 
-<https://bio.tools/REIMS> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0153,
-        edam:topic_0602,
-        edam:topic_3500,
-        edam:topic_3520 ;
-    sc:citation <https://doi.org/10.1007/S00216-019-02148-8>,
-        "pmcid:PMC6920236",
-        "pubmed:31713015" ;
-    sc:description """comparison between a diathermic knife and CO2 laser sampling on classification performance.
-
-The increasing need for rapid, in situ, and robust tissue profiling approaches in the context of intraoperative diagnostics has led to the development of a large number of ambient ionization-based surface sampling strategies. This paper compares the performances of a diathermic knife and a CO2 laser handpiece, both clinically approved, coupled to a rapid evaporative ionization mass spectrometry (REIMS) source for quasi-instantaneous tissue classification. Several fresh meat samples (muscle, liver, bone, bone marrow, cartilage, skin, fat) were obtained from different animals. Overall, the laser produced cleaner cuts and more reproducible and higher spectral quality signals when compared with the diathermic knife (CV laser = 9-12%, CV diathermic = 14-23%).
-
-||| HOMEPAGE MISSING!""" ;
-    sc:featureList edam:operation_0337,
-        edam:operation_3627,
-        edam:operation_3891 ;
-    sc:name "REIMS" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31713015" .
-
 <https://bio.tools/REPIC> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3168,
         edam:topic_3295,
@@ -62704,7 +50373,7 @@ REPIC (RNA Epitranscriptome Collection) is a database dedicated to provide a new
     sc:url "https://repicmod.uchicago.edu/repic/" .
 
 <https://bio.tools/RERconverge> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0625 ;
@@ -62735,7 +50404,7 @@ REPIC (RNA Epitranscriptome Collection) is a database dedicated to provide a new
         "Wynn Meyer" .
 
 <https://bio.tools/RESTORE> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_2830,
         edam:topic_3360,
@@ -62748,90 +50417,8 @@ REPIC (RNA Epitranscriptome Collection) is a database dedicated to provide a new
     sc:name "RESTORE" ;
     sc:url "https://gitlab.com/Chang_Lab/cycif_int_norm" .
 
-<https://bio.tools/RESULTSCellMinerCDB> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0208,
-        edam:topic_2640,
-        edam:topic_3360 ;
-    sc:citation <https://doi.org/10.1158/1078-0432.CCR-19-0419>,
-        "pmcid:PMC6801079",
-        "pubmed:31409613" ;
-    sc:description "> MEDIUM CONFIDENCE! | > COMMON LINK WITH (PUB. & NAME DIFFERENT) bio.tools/CellMinerCDB (DISCOVER.NCI.NIH.GOV/cellminercdb), bio.tools/mammalian_gene_collection (NCI.NIH.GOV), bio.tools/rcellminer (NCI.NIH.GOV/cellminer), bio.tools/cgap (NCI.NIH.GOV), bio.tools/pid (NCI.NIH.GOV) | > CORRECT NAME OF TOOL COULD ALSO BE 'DESIGN:CellMinerCDB', 'indenoisoquinolines', 'LMP400 olaparib', 'LMP400' | The Indenoisoquinoline TOP1 Inhibitors Selectively Target Homologous Recombination-Deficient and Schlafen 11-Positive Cancer Cells and Synergize with Olaparib | CellMiner Cross Database (CellMinerCDB) is the first web application to allow translational researchers to conduct analyses across all major cancer cell line pharmacogenomic data sources from NCI-DTP NCI-60, Sanger GDSC, and Broad CCLE/CTRP | Skip over navigation CellMiner NCI-60 NCI/DCTD/DTP" ;
-    sc:name "RESULTS:CellMinerCDB" ;
-    sc:url "http://discover.nci.nih.gov/cellminercdb" .
-
-<https://bio.tools/RESULTSMWMM> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0659,
-        edam:topic_2640,
-        edam:topic_3512 ;
-    sc:citation <https://doi.org/10.1186/S12920-019-0562-Z>,
-        "pmcid:PMC6683425",
-        "pubmed:31382962" ;
-    sc:description "> MEDIUM CONFIDENCE! | > CORRECT NAME OF TOOL COULD ALSO BE 'MWMM', 'blossom' | Clustering analysis of microRNA and mRNA expression data from TCGA using maximum edge-weighted matching algorithms | maximum weighted merger method" ;
-    sc:featureList edam:operation_3432,
-        edam:operation_3766,
-        edam:operation_3792 ;
-    sc:name "RESULTS:MWMM" ;
-    sc:url "https://github.com/BaiLab/MWMM" .
-
-<https://bio.tools/RESULTSPASCAL> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0102,
-        edam:topic_0203,
-        edam:topic_0602,
-        edam:topic_3170,
-        edam:topic_3517 ;
-    sc:citation <https://doi.org/10.1186/S12920-019-0593-5>,
-        "pmcid:PMC6813133",
-        "pubmed:31651322" ;
-    sc:description """a biological insight into the novel associated genes.
-
-BACKGROUND:Attention-Deficit Hyperactivity Disorder (ADHD) is a complex neurodevelopmental disorder (NDD) which may significantly impact on the affected individual's life. ADHD is acknowledged to have a high heritability component (70-80%). Recently, a meta-analysis of GWAS (Genome Wide Association Studies) has demonstrated the association of several independent loci. Our main aim here, is to apply PASCAL (pathway scoring algorithm), a new gene-based analysis (GBA) method, to the summary statistics obtained in this meta-analysis. PASCAL will take into account the linkage disequilibrium (LD) across genomic regions in a different way than the most commonly employed GBA methods (MAGMA or VEGAS (Versatile Gene-based Association Study)).
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'CONCLUSIONS:PASCAL', 'PASCAL', 'Gene-based analysis ADHD using PASCAL'""" ;
-    sc:featureList edam:operation_2495,
-        edam:operation_3223,
-        edam:operation_3501 ;
-    sc:name "RESULTS:PASCAL" ;
-    sc:url "https://www2.unil.ch/cbg/index.php?title=Pascal" .
-
-<https://bio.tools/RESULTSTangle> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0080,
-        edam:topic_0634,
-        edam:topic_3474 ;
-    sc:citation <https://doi.org/10.1371/JOURNAL.PONE.0211844>,
-        "pmcid:PMC6799900",
-        "pubmed:31626666" ;
-    sc:description """Predicting diabetes second-line therapy initiation in the Australian population via time span-guided neural attention network.
-
-TANGLE: Time spAN Guided neuraL attEntion model.
-
-TANGLE is a timespan-guided neural attention mechanism that can be used to integrate sequences of Medicare services and the time span between them to provide interpretable patients representations, which can be further used for some target prediction task.
-
-Predictive capabilities of TANGLE are demonstrated here with an application on the 10% publicly available sample of deidentified, individual level, linked Medicare Benefits Schedule (MBS) and Pharmaceutical Benefits Scheme (PBS) electronic databases of Australia. Starting from sequences of MBS-items and timespans, TANGLE can predict which diabetic patient, currently on metformin only, is likely to be prescribed with a different type of diabetes controlling drug in the near future.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'IMPLEMENTATION:Tangle', 'Tangle'""" ;
-    sc:featureList edam:operation_0337,
-        edam:operation_3439 ;
-    sc:name "RESULTS:Tangle" ;
-    sc:url "https://github.com/samuelefiorini/tangle" .
-
-<https://bio.tools/REVO> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0176,
-        edam:topic_0602 ;
-    sc:citation <https://doi.org/10.26434/CHEMRXIV.7973759.V2>,
-        <https://doi.org/10.26434/CHEMRXIV.7973759.V3> ;
-    sc:description """Resampling of Ensembles by Variation Optimization.
-
-Conventional molecular dynamics simulations are incapable of sampling many important interactions in biomolecular systems due to their high dimensionality and rough energy landscapes. To observe rare events and calculate transition rates in these systems, enhanced sampling is a necessity. In particular, the study of ligand-protein interactions necessitates a diverse ensemble of protein conformations and transition states, and for many systems this occurs on prohibitively long timescales. Previous strategies such as WExplore that can be used to determine these types of ensembles are hindered by problems related to the regioning of conformational space. Here we propose a novel, regionless, enhanced sampling method that is based on the weighted ensemble framework.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'trypsin-benzamidine', 'regionless'""" ;
-    sc:featureList edam:operation_2476 ;
-    sc:name "REVO" ;
-    sc:url "https://doi.org/10.26434/CHEMRXIV.7973759.V3" .
-
 <https://bio.tools/RFQAmodel> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0130,
         edam:topic_0736 ;
@@ -62847,7 +50434,7 @@ Conventional molecular dynamics simulations are incapable of sampling many impor
     sc:url "https://github.com/clarewest/RFQAmodel" .
 
 <https://bio.tools/RF_Purify> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3295,
         edam:topic_3518 ;
@@ -62862,7 +50449,7 @@ Conventional molecular dynamics simulations are incapable of sampling many impor
     sc:url "https://github.com/mwsill/RFpurify" .
 
 <https://bio.tools/RGAAT> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
@@ -62882,7 +50469,7 @@ Conventional molecular dynamics simulations are incapable of sampling many impor
     biotools:primaryContact "Qiang Lin" .
 
 <https://bio.tools/RGADE> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0203,
         edam:topic_0625,
@@ -62900,7 +50487,7 @@ Conventional molecular dynamics simulations are incapable of sampling many impor
     sc:url "http://github.com/hugorody/rga" .
 
 <https://bio.tools/RGRPT> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0622,
         edam:topic_0654,
@@ -62919,7 +50506,7 @@ Genome rearrangements are the evolutionary events on level of genomes. It is a g
     sc:url "https://github.com/wangjuanimu/data-of-genome-rearrangement" .
 
 <https://bio.tools/RHPCG> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0659,
         edam:topic_2640,
@@ -62939,7 +50526,7 @@ Hippo signaling pathway is a highly conserved pathway, which is consisted of a g
     sc:url "http://www.medsysbio.org/RHPCG" .
 
 <https://bio.tools/RICE-GUARD> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_0780,
         edam:topic_3474 ;
@@ -62954,7 +50541,7 @@ Rice blast is the most serious disease of cultivated rice. It is caused by the f
     sc:url "http://multisite.iris.cat/riceguard/" .
 
 <https://bio.tools/RICOPILI> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3316,
         edam:topic_3517 ;
@@ -62967,7 +50554,7 @@ Rice blast is the most serious disease of cultivated rice. It is caused by the f
     sc:url "https://sites.google.com/a/broadinstitute.org/RICOPILI/home" .
 
 <https://bio.tools/RIL-Contour> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3384,
         edam:topic_3444,
@@ -62988,7 +50575,7 @@ Rice blast is the most serious disease of cultivated rice. It is caused by the f
     sc:url "https://gitlab.com/Philbrick/rilcontour" .
 
 <https://bio.tools/RINspector> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0130,
         edam:topic_0199,
@@ -63010,7 +50597,7 @@ Rice blast is the most serious disease of cultivated rice. It is caused by the f
     biotools:primaryContact <https://orcid.org/0000-0002-6807-6621> .
 
 <https://bio.tools/RIPTiDe> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3308,
@@ -63030,7 +50617,7 @@ Rice blast is the most serious disease of cultivated rice. It is caused by the f
     biotools:primaryContact "Matthew L. Jenior" .
 
 <https://bio.tools/RIPper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0749,
         edam:topic_3794 ;
@@ -63045,7 +50632,7 @@ Rice blast is the most serious disease of cultivated rice. It is caused by the f
     sc:url "http://theripper.hawk.rocks" .
 
 <https://bio.tools/RIdeogram> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0654,
@@ -63063,7 +50650,7 @@ Rice blast is the most serious disease of cultivated rice. It is caused by the f
         "Jinhui Chen" .
 
 <https://bio.tools/RIscoper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0218,
@@ -63082,7 +50669,7 @@ Rice blast is the most serious disease of cultivated rice. It is caused by the f
     biotools:primaryContact "Wang Dong" .
 
 <https://bio.tools/RMBase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application",
         "Web service" ;
@@ -63107,7 +50694,7 @@ Rice blast is the most serious disease of cultivated rice. It is caused by the f
     biotools:primaryContact "Jian-Hua Yang" .
 
 <https://bio.tools/RMKL> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_2640,
         edam:topic_3474 ;
@@ -63122,20 +50709,8 @@ Rice blast is the most serious disease of cultivated rice. It is caused by the f
     sc:name "RMKL" ;
     sc:url "https://CRAN.R-project.org/package=RMKL" .
 
-<https://bio.tools/RMLNet> a sc:SoftwareApplication ;
-    sc:citation <https://doi.org/10.3390/S19204374>,
-        "pmcid:PMC6832378",
-        "pubmed:31658686" ;
-    sc:description """Reliable Wireless Network for a Multiarea TDOA-Based Localization System.
-
-Ultrawideband (UWB) wireless communication is a promising spread-spectrum technology for accurate localization among devices characterized by a low transmission power, a high rate and immunity to multipath propagation. The accurately of the clock synchronization algorithm and the time-difference-of-arrival (TDOA) localization algorithm provide precise position information of mobile nodes with centimeter-level accuracy for the UWB localization system. However, the reliability of target node localization for multi-area localization remains a subject of research. Especially for dynamic and harsh indoor environments, an effective scheme among competing target nodes for localization due to the scarcity of radio resources remains a challenge.
-
-||| HOMEPAGE MISSING!""" ;
-    sc:name "RMLNet" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31658686" .
-
 <https://bio.tools/RMut> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0602,
@@ -63156,7 +50731,7 @@ Ultrawideband (UWB) wireless communication is a promising spread-spectrum techno
     sc:url "https://github.com/csclab/RMut" .
 
 <https://bio.tools/RNA-seq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0202,
         edam:topic_0203,
         edam:topic_0634,
@@ -63172,29 +50747,8 @@ Abstract Correct communication between immune cells and peripheral neurons is cr
     sc:name "RNA-seq" ;
     sc:url "http://rna-seq-browser.herokuapp.com/" .
 
-<https://bio.tools/RNA-seq_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0659,
-        edam:topic_0769,
-        edam:topic_3170,
-        edam:topic_3308,
-        edam:topic_3320 ;
-    sc:citation <https://doi.org/10.3389/FGENE.2019.01152>,
-        "pmcid:PMC6861419",
-        "pubmed:31781178" ;
-    sc:description """RNA-Seq Perspectives to Improve Clinical Diagnosis.
-
-This is the ENCODE-DCC RNA-sequencing pipeline. The scope of the pipeline is to align reads, generate signal tracks, and quantify genes and isoforms.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'splicing', '10-35', 'diagnosis', 'profound'""" ;
-    sc:featureList edam:operation_3563,
-        edam:operation_3565,
-        edam:operation_3891 ;
-    sc:license "MIT" ;
-    sc:name "RNA-seq_autogenerated" ;
-    sc:url "https://github.com/ENCODE-DCC/rna-seq-pipeline" .
-
 <https://bio.tools/RNAIndel> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2885,
         edam:topic_3170,
         edam:topic_3474 ;
@@ -63216,7 +50770,7 @@ RNAIndel calls coding indels from tumor RNA-Seq data and classifies them as soma
     sc:url "https://github.com/stjude/RNAIndel" .
 
 <https://bio.tools/RNARedPrint> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0099,
@@ -63237,30 +50791,8 @@ RNAIndel calls coding indels from tumor RNA-Seq data and classifies them as soma
     sc:url "https://github.com/yannponty/RNARedPrint" ;
     biotools:primaryContact "Yann Ponty" .
 
-<https://bio.tools/RNASeqR_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0196,
-        edam:topic_0769,
-        edam:topic_3170,
-        edam:topic_3308,
-        edam:topic_3512 ;
-    sc:citation <https://doi.org/10.1109/TCBB.2019.2956708>,
-        "pubmed:31796413" ;
-    sc:description """an R package for automated two-group RNA-Seq analysis workflow.
-
-This R package is designed for case-control RNA-Seq analysis (two-group). There are six steps: "RNASeqRParam S4 Object Creation", "Environment Setup", "Quality Assessment", "Reads Alignment & Quantification", "Gene-level Differential Analyses" and "Functional Analyses". Each step corresponds to a function in this package. After running functions in order, a basic RNASeq analysis would be done easily.
-
-||| NAME (RNASeqR) SIMILAR TO (PUB. DIFFERENT) bio.tools/rnaseqr (RNASEQR)""" ;
-    sc:featureList edam:operation_2939,
-        edam:operation_3185,
-        edam:operation_3680,
-        edam:operation_3800,
-        edam:operation_3891 ;
-    sc:license "Artistic-2.0" ;
-    sc:name "RNASeqR_autogenerated" ;
-    sc:url "https://bioconductor.org/packages/release/bioc/html/RNASeqR.html" .
-
 <https://bio.tools/RNASeq_similarity_matrix> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0625,
         edam:topic_2885,
@@ -63287,7 +50819,7 @@ git clone https://github.com/nicokist/RNASeq_similarity_matrix""" ;
     sc:url "http://www.github.com/nicokist/RNASeq_similarity_matrix" .
 
 <https://bio.tools/RNATracker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3474,
         edam:topic_3512 ;
@@ -63302,31 +50834,8 @@ git clone https://github.com/nicokist/RNASeq_similarity_matrix""" ;
     sc:name "RNATracker" ;
     sc:url "https://www.github.com/HarveyYan/RNATracker" .
 
-<https://bio.tools/RNA_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0099,
-        edam:topic_0821,
-        edam:topic_2885,
-        edam:topic_3170,
-        edam:topic_3308 ;
-    sc:citation <https://doi.org/10.1038/S41592-019-0610-9>,
-        "pubmed:31636457" ;
-    sc:description """Genome-wide quantification of ADAR adenosine-to-inosine RNA editing activity.
-
-A tool for the calculation of RNA-editing index for RNA seq data.
-
-The installation creates a file named ResourcesPaths.ini at <InstallPath>/src/RNAEditingIndex/Configs (set with configure.sh) which specifies the default path to the required programs and data files (such as genomes and tables). Modify this file after installtion to change defaults (such as in the case of not downloading the data files).
-
-||| NAME EQUAL TO (PUB. DIFFERENT) bio.tools/rna.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'AEI'""" ;
-    sc:featureList edam:operation_3096,
-        edam:operation_3211,
-        edam:operation_3799 ;
-    sc:name "RNA_autogenerated" ;
-    sc:url "https://github.com/a2iEditing/RNAEditingIndexer" .
-
 <https://bio.tools/RNAactDrug> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0208,
         edam:topic_0659,
         edam:topic_0749,
@@ -63346,26 +50855,22 @@ RNAactDrug is a comprehensive resource for querying associations between drug se
 
 <https://bio.tools/RNAct> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3021" ;
-            sc:name "UniProt accession" ;
-            sc:sameAs "http://edamontology.org/data_3021" ],
+            sc:additionalType "http://edamontology.org/data_1026" ;
+            sc:name "Gene symbol" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2725" ;
-            sc:name "Ensembl transcript ID" ;
-            sc:sameAs "http://edamontology.org/data_2725" ],
+            sc:additionalType "http://edamontology.org/data_2725" ;
+            sc:name "Ensembl transcript ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1026" ;
-            sc:name "Gene symbol" ;
-            sc:sameAs "http://edamontology.org/data_1026" ],
+            sc:additionalType "http://edamontology.org/data_3021" ;
+            sc:name "UniProt accession" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1033" ;
-            sc:name "Ensembl gene ID" ;
-            sc:sameAs "http://edamontology.org/data_1033" ] ;
+            sc:additionalType "http://edamontology.org/data_1033" ;
+            sc:name "Ensembl gene ID" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1772" ;
-            sc:name "Score" ;
-            sc:sameAs "http://edamontology.org/data_1772" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1772" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Score" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0128,
@@ -63386,7 +50891,7 @@ with supporting experimental data, enabling a global view of the protein–RNA i
     biotools:primaryContact <https://orcid.org/0000-0001-7524-6310> .
 
 <https://bio.tools/RNAdemocracy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0097,
         edam:topic_0099 ;
@@ -63400,7 +50905,7 @@ with supporting experimental data, enabling a global view of the protein–RNA i
     sc:url "https://github.com/beskidmore/RNAdemocracy" .
 
 <https://bio.tools/RNAdt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0099,
         edam:topic_0632,
@@ -63420,7 +50925,7 @@ Timeline of HTS-associated RNA structure probing methods""" ;
     sc:url "http://www.zhounan.org/rnadt" .
 
 <https://bio.tools/RNAfamProb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0097,
         edam:topic_0659,
@@ -63441,33 +50946,8 @@ This project has been written in mainly Rust, a systems programming language."""
     sc:name "RNAfamProb Plus NeoFold" ;
     sc:url "https://github.com/heartsh/rnafamprob" .
 
-<https://bio.tools/RNAfamProb_Plus_NeoFold> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0082,
-        edam:topic_0097,
-        edam:topic_0659,
-        edam:topic_3372 ;
-    sc:citation <https://doi.org/10.1101/812891> ;
-    sc:description """Estimations of Posterior Probabilities on RNA Structural Alignment and RNA Secondary Structures with Incorporating Homologous-RNA Sequences.
-
-RNAfamProb Program, Program for Estimations of Posterior Probabilities on RNA Structural alignment.
-
-NeoFold Program, Program for Maximum-expected-accuracy Estimations of RNA Secondary Structures with Incorporating Homologous-RNA sequences.
-
-This project provides the RNAfamProb program, a program for estimations of posterior probabilities on RNA structural alignment.
-
-This project provides the NeoFold Program, a program for the maximum-expected-accuracy estimations of RNA secondary structures with incorporating homologous-RNA sequences.
-
-This project has been written in mainly Rust, a systems programming language.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'RNAfamProb', 'NeoFold'""" ;
-    sc:featureList edam:operation_0278,
-        edam:operation_0295,
-        edam:operation_0502 ;
-    sc:name "RNAfamProb Plus NeoFold" ;
-    sc:url "https://github.com/heartsh/rnafamprob" .
-
 <https://bio.tools/RNAm5CPred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_3170,
         edam:topic_3308 ;
@@ -63486,14 +50966,14 @@ A webserver for RNA 5-methylcytosine sites prediction. RNAm5CPred was developed
 
 <https://bio.tools/RNAsamba> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3495" ;
-            sc:name "RNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3495" ] ;
+            sc:additionalType "http://edamontology.org/data_3495" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "RNA sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1254" ;
-            sc:name "Sequence property" ;
-            sc:sameAs "http://edamontology.org/data_1254" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1254" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Sequence property" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -63515,7 +50995,7 @@ A webserver for RNA 5-methylcytosine sites prediction. RNAm5CPred was developed
     sc:url "https://rnasamba.lge.ibi.unicamp.br/" .
 
 <https://bio.tools/RNN> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0820,
         edam:topic_3474 ;
@@ -63529,7 +51009,7 @@ A webserver for RNA 5-methylcytosine sites prediction. RNAm5CPred was developed
     sc:url "https://github.com/YellowcardD/RNN-for-membrane-protein-types-prediction" .
 
 <https://bio.tools/RNSCLC> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3421 ;
     sc:citation <https://doi.org/10.1186/S13040-019-0205-0>,
@@ -63539,18 +51019,8 @@ A webserver for RNA 5-methylcytosine sites prediction. RNAm5CPred was developed
     sc:name "RNSCLC-PRSP software" ;
     sc:url "http://www.rnsclcpps.com" .
 
-<https://bio.tools/RNSCLC-PRSP_software> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_2640,
-        edam:topic_3421 ;
-    sc:citation <https://doi.org/10.1186/S13040-019-0205-0>,
-        "pmcid:PMC6708148",
-        "pubmed:31462928" ;
-    sc:description "> LOW CONFIDENCE! | > HOMEPAGE BROKEN! | RNSCLC-PRSP software to predict the prognostic risk and survival in patients with resected T1-3N0-2 M0 non-small cell lung cancer | Background:The clinical outcomes of patients with resected T1-3N0-2M0 non-small cell lung cancer (NSCLC) with the same tumor-node-metastasis (TNM) stage are diverse. Although other prognostic factors and prognostic prediction tools have been reported in many published studies, a convenient, accurate and specific prognostic prediction software for clinicians has not been developed. The purpose of our research was to develop this type of software that can analyze subdivided T and N staging and additional factors to predict prognostic risk and the corresponding mean and median survival time and 1-5-year survival rates of patients with resected T1-3N0-2M0 NSCLC. Results:Using a Cox proportional hazard regression model, we determined the independent prognostic factors and obtained a prognostic index (PI) eq" ;
-    sc:name "RNSCLC-PRSP software" ;
-    sc:url "http://www.rnsclcpps.com" .
-
 <https://bio.tools/ROADMAP_epigenomics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2815,
         edam:topic_3173 ;
@@ -63570,7 +51040,7 @@ A webserver for RNA 5-methylcytosine sites prediction. RNAm5CPred was developed
     biotools:primaryContact "Jin Wook Lee" .
 
 <https://bio.tools/ROBOKOP> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0218,
         edam:topic_3855 ;
     sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTZ604>,
@@ -63582,7 +51052,7 @@ A webserver for RNA 5-methylcytosine sites prediction. RNAm5CPred was developed
     sc:url "http://robokop.renci.org" .
 
 <https://bio.tools/ROBOKOP_KG> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3382 ;
     sc:citation <https://doi.org/10.1021/ACS.JCIM.9B00683>,
@@ -63593,7 +51063,7 @@ A webserver for RNA 5-methylcytosine sites prediction. RNAm5CPred was developed
     sc:url "http://robokopkg.renci.org" .
 
 <https://bio.tools/ROBOT> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0769,
         edam:topic_3372 ;
@@ -63609,7 +51079,7 @@ A webserver for RNA 5-methylcytosine sites prediction. RNAm5CPred was developed
     sc:url "http://robot.obolibrary.org" .
 
 <https://bio.tools/ROHan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3056 ;
     sc:citation <https://doi.org/10.1534/genetics.119.302057> ;
@@ -63619,7 +51089,7 @@ A webserver for RNA 5-methylcytosine sites prediction. RNAm5CPred was developed
     sc:url "http://grenaud.github.io/ROHan/" .
 
 <https://bio.tools/ROIMCR> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0153,
         edam:topic_3172,
@@ -63639,7 +51109,7 @@ A webserver for RNA 5-methylcytosine sites prediction. RNAm5CPred was developed
     biotools:primaryContact "Romà Tauler" .
 
 <https://bio.tools/ROMOP> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0621,
         edam:topic_3063,
@@ -63667,7 +51137,7 @@ Benjamin S. Glicksberg 9/14/2018""" ;
     sc:url "http://romop.ucsf.edu" .
 
 <https://bio.tools/RPANDA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0194,
         edam:topic_0625,
         edam:topic_3293 ;
@@ -63680,7 +51150,7 @@ Benjamin S. Glicksberg 9/14/2018""" ;
     sc:url "https://github.com/hmorlon/PANDA" .
 
 <https://bio.tools/RPGeNet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
         edam:topic_0634,
@@ -63698,7 +51168,7 @@ Benjamin S. Glicksberg 9/14/2018""" ;
     sc:url "https://compgen.bio.ub.edu/RPGeNet" .
 
 <https://bio.tools/RPITER> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0602,
@@ -63720,7 +51190,7 @@ Benjamin S. Glicksberg 9/14/2018""" ;
     biotools:primaryContact "C. Peng" .
 
 <https://bio.tools/RR-APET> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3068 ;
     sc:citation <https://doi.org/10.1016/J.CMPB.2019.105127>,
         "pubmed:31648100" ;
@@ -63733,7 +51203,7 @@ BACKGROUND AND OBJECTIVES:Heart rate variability (HRV) has increasingly been lin
     sc:url "https://gitlab.com/MegMcC/rr-apet-hrv-analysis-software" .
 
 <https://bio.tools/RRBSsim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3295,
@@ -63753,7 +51223,7 @@ BACKGROUND AND OBJECTIVES:Heart rate variability (HRV) has increasingly been lin
     biotools:primaryContact "Xiwei Sun" .
 
 <https://bio.tools/RRDistMaps> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0154,
@@ -63773,7 +51243,7 @@ BACKGROUND AND OBJECTIVES:Heart rate variability (HRV) has increasingly been lin
     biotools:primaryContact "Conrad C. Huang" .
 
 <https://bio.tools/RRMdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0108,
@@ -63795,7 +51265,7 @@ BACKGROUND AND OBJECTIVES:Heart rate variability (HRV) has increasingly been lin
     biotools:primaryContact "S. Dunin-Horkawicz" .
 
 <https://bio.tools/RRphylo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0625,
         edam:topic_3500 ;
@@ -63813,14 +51283,14 @@ The goal of RRphylo is to compute phenotypic evolutionary rates, estimate ancest
 
 <https://bio.tools/RSAT-position-analysis> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1234" ;
-            sc:name "Sequence set (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1234" ] ;
+            sc:additionalType "http://edamontology.org/data_1234" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence set (nucleic acid)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2070" ;
-            sc:name "Sequence motif (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_2070" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2070" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Sequence motif (nucleic acid)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application",
         "Web service" ;
@@ -63850,14 +51320,14 @@ The goal of RRphylo is to compute phenotypic evolutionary rates, estimate ancest
 
 <https://bio.tools/RSAT_-_Retrieve_Sequence> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2295" ;
-            sc:name "Gene ID" ;
-            sc:sameAs "http://edamontology.org/data_2295" ] ;
+            sc:additionalType "http://edamontology.org/data_2295" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Gene ID" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3494" ;
-            sc:name "DNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3494" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:encodingFormat "http://edamontology.org/format_1957" ;
+            sc:name "DNA sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web API",
         "Web application",
@@ -63876,7 +51346,7 @@ The goal of RRphylo is to compute phenotypic evolutionary rates, estimate ancest
     biotools:primaryContact <https://orcid.org/0000-0002-8799-8584> .
 
 <https://bio.tools/RSAT_Var-tools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0749,
@@ -63899,14 +51369,14 @@ The goal of RRphylo is to compute phenotypic evolutionary rates, estimate ancest
 
 <https://bio.tools/RSAT_dyad-analysis> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1234" ;
-            sc:name "Sequence set (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1234" ] ;
+            sc:additionalType "http://edamontology.org/data_1234" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence set (nucleic acid)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2070" ;
-            sc:name "Sequence motif (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_2070" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2070" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Sequence motif (nucleic acid)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application",
         "Web service" ;
@@ -63934,35 +51404,8 @@ The goal of RRphylo is to compute phenotypic evolutionary rates, estimate ancest
     sc:url "http://teaching.rsat.eu/dyad-analysis_form.cgi" ;
     biotools:primaryContact <https://orcid.org/0000-0002-8799-8584> .
 
-<https://bio.tools/RSAT_variation-tools> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0102,
-        edam:topic_0749,
-        edam:topic_2885,
-        edam:topic_3500,
-        edam:topic_3517 ;
-    sc:citation <https://doi.org/10.1016/J.CSBJ.2019.09.009>,
-        "pmcid:PMC6906655",
-        "pubmed:31871587" ;
-    sc:description """An accessible and flexible framework to predict the impact of regulatory variants on transcription factor binding.
-
-Regulatory Sequence Analysis Tools.
-
-This web site provides a series of modular computer programs specifically designed for the detection of regulatory signals in non-coding sequences.
-
-RSAT servers have been up and running since 1997. The project was initiated by Jacques van Helden, and is now pursued by the RSAT team.
-
-maintained by TAGC - Université Aix Marseilles, France.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'RSAT' (bio.tools/rsat), 'RSAT accessible through', 'Regulatory Sequence Analysis Tools'""" ;
-    sc:featureList edam:operation_0445,
-        edam:operation_0487,
-        edam:operation_3196,
-        edam:operation_3226 ;
-    sc:name "RSAT variation-tools" ;
-    sc:url "http://rsat.eu" .
-
 <https://bio.tools/RSI> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0625,
@@ -63984,7 +51427,7 @@ maintained by TAGC - Université Aix Marseilles, France.
     biotools:primaryContact "Hu Li" .
 
 <https://bio.tools/RSMLM> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0632,
         edam:topic_3047,
         edam:topic_3382 ;
@@ -63999,7 +51442,7 @@ maintained by TAGC - Université Aix Marseilles, France.
     sc:url "https://github.com/JeremyPike/RSMLM" .
 
 <https://bio.tools/RSQLite> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3360,
         edam:topic_3512 ;
@@ -64014,32 +51457,8 @@ maintained by TAGC - Université Aix Marseilles, France.
     sc:name "RSQLite" ;
     sc:url "http://CRAN.R-project.org/package=RSQLite" .
 
-<https://bio.tools/RSRS> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0625,
-        edam:topic_0780,
-        edam:topic_2885,
-        edam:topic_3168 ;
-    sc:citation <https://doi.org/10.1186/S12284-019-0356-0>,
-        "pubmed:31872320" ;
-    sc:description """Rice Stress-Resistant SNP Database.
-
-Rice Stress Resistant SNP Database.
-
-Rice (Oryza sativa L.) yield is limited inherently by environmental stresses, including biotic and abiotic stresses. Thus, it is of great importance to perform in-depth explorations on the genes that are closely associated with the stress-resistant traits in rice. The Rice Stress-Resistant SNP Database incorporates the phenotype information of 400 rice varieties and the function and genome annotation of about 9.5 million stress-resistant SNPs detected from these stress-resistant rice varieties.
-
-400 Biotic and abiotic stress resistant varieties.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'Rice Stress-Resistant', 'RESULTS:Rice Stress-Resistant', 'CONCLUSION:RSRS', 'Rice Stress-Resistant SNP'""" ;
-    sc:featureList edam:operation_0484,
-        edam:operation_0487,
-        edam:operation_2421,
-        edam:operation_3196,
-        edam:operation_3661 ;
-    sc:name "RSRS" ;
-    sc:url "http://bioinformatics.fafu.edu.cn/RSRS" .
-
 <https://bio.tools/RT_networks> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0749,
         edam:topic_3173 ;
@@ -64054,7 +51473,7 @@ Rice (Oryza sativa L.) yield is limited inherently by environmental stresses, in
     sc:url "https://github.com/sebkim/RTNet" .
 
 <https://bio.tools/RUFUS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0199,
         edam:topic_0749,
@@ -64068,7 +51487,7 @@ Rice (Oryza sativa L.) yield is limited inherently by environmental stresses, in
     sc:url "https://github.com/jandrewrfarrell/RUFUS" .
 
 <https://bio.tools/RUV-III> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3512,
@@ -64091,32 +51510,8 @@ Rice (Oryza sativa L.) yield is limited inherently by environmental stresses, in
     biotools:primaryContact <https://orcid.org/0000-0002-5403-7998>,
         "Johann Gagnon-Bartsch" .
 
-<https://bio.tools/RWE_Framework> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0202,
-        edam:topic_2840,
-        edam:topic_3305,
-        edam:topic_3378,
-        edam:topic_3379 ;
-    sc:citation <https://doi.org/10.1007/S40801-019-00167-6>,
-        "pmcid:PMC6879703",
-        "pubmed:31741199" ;
-    sc:description """An Interactive Visual Tool to Support a Real-World Evidence Study Design.
-
-This flow diagram is a tool to aid initial planning for and design of an RWE study.
-
-Define Objectives and Endpoint(s).
-
-Welcome to the RWE Framework, a tool developed to aid the planning and design of real-world evidence (RWE) studies. Once completed, results will be summarised to support next steps in the study design development. To start, please tick the appropriate box below:.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'RWE'""" ;
-    sc:featureList edam:operation_0305,
-        edam:operation_0337,
-        edam:operation_2428 ;
-    sc:name "RWE Framework" ;
-    sc:url "https://rweframework.com/" .
-
 <https://bio.tools/RXN> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0602,
         edam:topic_2258,
@@ -64131,7 +51526,7 @@ Welcome to the RWE Framework, a tool developed to aid the planning and design of
     sc:url "https://rxn.res.ibm.com" .
 
 <https://bio.tools/R_qtl2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0625,
@@ -64155,7 +51550,7 @@ Welcome to the RWE Framework, a tool developed to aid the planning and design of
     biotools:primaryContact "Karl Broman" .
 
 <https://bio.tools/RaGOO> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0780,
         edam:topic_2229,
@@ -64185,7 +51580,7 @@ RaGOO is a tool for coalescing genome assembly contigs into pseudochromosomes vi
     sc:url "https://github.com/malonge/RaGOO" .
 
 <https://bio.tools/RaNA-Seq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0203,
         edam:topic_0769,
@@ -64200,7 +51595,7 @@ RaGOO is a tool for coalescing genome assembly contigs into pseudochromosomes vi
     sc:url "https://ranaseq.eu" .
 
 <https://bio.tools/Racon> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0780,
         edam:topic_3673 ;
@@ -64216,7 +51611,7 @@ RaGOO is a tool for coalescing genome assembly contigs into pseudochromosomes vi
     sc:url "https://github.com/isovic/racon" .
 
 <https://bio.tools/RadAA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0196,
@@ -64235,7 +51630,7 @@ RaGOO is a tool for coalescing genome assembly contigs into pseudochromosomes vi
     biotools:primaryContact "Inge Seim" .
 
 <https://bio.tools/Ragp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0780,
         edam:topic_3474,
         edam:topic_3510 ;
@@ -64251,10 +51646,9 @@ RaGOO is a tool for coalescing genome assembly contigs into pseudochromosomes vi
 
 <https://bio.tools/RainBio> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0850" ;
-            sc:name "Sequence set" ;
-            sc:sameAs "http://edamontology.org/data_0850" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0850" ;
+            sc:name "Sequence set" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_2269,
@@ -64278,7 +51672,7 @@ RainBio uses the same file format that InteractiVenn. Several demo datasets are
     biotools:primaryContact <https://orcid.org/0000-0002-5477-180X> .
 
 <https://bio.tools/Ramedis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0625,
@@ -64296,7 +51690,7 @@ RainBio uses the same file format that InteractiVenn. Several demo datasets are
     biotools:primaryContact "Thoralf Töpel" .
 
 <https://bio.tools/RametrixTM> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3277,
         edam:topic_3360,
         edam:topic_3422 ;
@@ -64310,7 +51704,7 @@ RainBio uses the same file format that InteractiVenn. Several demo datasets are
     sc:url "https://github.com/SengerLab/RametrixLITEToolbox" .
 
 <https://bio.tools/Ramf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0780,
         edam:topic_2269 ;
@@ -64332,30 +51726,18 @@ If you use the package, please cite it:""" ;
 
 <https://bio.tools/Ramid> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ],
-        [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrum" ;
-            sc:sameAs "http://edamontology.org/data_0943" ],
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Mass spectrometry data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrum" ;
-            sc:sameAs "http://edamontology.org/data_0943" ],
-        [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ] ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3650" ;
+            sc:name "Mass spectrum" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrum" ;
-            sc:sameAs "http://edamontology.org/data_0943" ],
-        [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrum" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3835" ;
+            sc:name "Mass spectrum" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3172,
         edam:topic_3955 ;
@@ -64370,26 +51752,8 @@ If you use the package, please cite it:""" ;
     sc:softwareVersion "0.0.1.0" ;
     sc:url "https://github.com/seliv55/ramidcor" .
 
-<https://bio.tools/Ramsar> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0610,
-        edam:topic_3390 ;
-    sc:citation <https://doi.org/10.1101/737056> ;
-    sc:description "> LOW CONFIDENCE! | > CORRECT NAME OF TOOL COULD ALSO BE 'Wetlands', 'Sambhar Lake', 'Sambhar Lake habitat suitability migratory', 'Sambhar' | A Maxent modelling with a geospatial approach for the Habitat suitability of Flamingos in an Evanescing Ramsar site (Sambhar Lake, India) over the changing climatic scenarios | ENVIS Centre on Wildlife & Protected Areas | Hosted by Wildlife Institute of India, Dehradun | Sponsored by Ministry of Environment, Forests & Climate Change, Govt of India | The Ramsar Convention is an international treaty for the conservation and sustainable utilization of wetlands, recognizing the fundamental ecological functions of wetlands and their economic, cultural, scientific, and recreational value. Click to know more on Ramsar sites in India | (Photo: Sangeeta Angom, Loktak Lake, Manipur)" ;
-    sc:featureList edam:operation_3435 ;
-    sc:name "Ramsar" ;
-    sc:url "http://wiienvis.nic.in/Database/ramsar_wetland_sites_8224.aspx" .
-
-<https://bio.tools/Rangatiratanga_Maori_self-determination_Whanau_Ora> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0602 ;
-    sc:citation <https://doi.org/10.1016/J.SSMPH.2019.100450>,
-        "pmcid:PMC6646741",
-        "pubmed:31367669" ;
-    sc:description "> VERY_LOW CONFIDENCE! | > HOMEPAGE MISSING! | > CORRECT NAME OF TOOL COULD ALSO BE 'Rangatiratanga Maori self-determination Whanau', 'Tino Rangatiratanga Maori self-determination Whanau', 'Maori homelessness', 'Maori self-determination Whanau Ora' | A principles framework for taking action on Māori/Indigenous Homelessness in Aotearoa/New Zealand | Objective:The objective of this research was to develop a principles framework to guide action on Māori Indigenous homelessness in Aotearoa incorporating Rangatiratanga (Māori self-determination), Whānau Ora (Government policy that places Māori families at the center of funding, policy and services) and Housing First" ;
-    sc:name "Rangatiratanga Maori self-determination Whanau Ora" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31367669" .
-
 <https://bio.tools/RankerGUI> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0769,
         edam:topic_2830,
@@ -64412,7 +51776,7 @@ RankerGUI automates the analysis of complex gene expression signatures. The Pipe
     sc:url "http://watson.na.icar.cnr.it/rankergui/index.php" .
 
 <https://bio.tools/RapidACi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0780,
         edam:topic_2269,
         edam:topic_3298 ;
@@ -64435,15 +51799,8 @@ If, later on, you need to adjust leaf area values, you need to provide a datafra
     sc:name "RapidACi" ;
     sc:url "https://github.com/ManuelLamothe/RapidACi" .
 
-<https://bio.tools/RapidNAM> a sc:SoftwareApplication ;
-    sc:citation <https://doi.org/10.1109/TBME.2019.2934907>,
-        "pubmed:31403406" ;
-    sc:description "> MEDIUM CONFIDENCE! | > HOMEPAGE MISSING! | > CORRECT NAME OF TOOL COULD ALSO BE 'NAM' (bio.tools/nam), 'CONCLUSION:The', 'maxillae', 'presurgical' | Algorithm for the semi-automated generation of nasoalveolar molding device designs for the presurgical treatment of bilateral cleft lip and palate | OBJECTIVE:Nasoalveolar molding (NAM) is an accepted presurgical treatment modality for newborns with cleft lip and palate (CLP). However, the therapy is time-consuming and requires high expertise. To facilitate the treatment, we reveal an algorithm for the automated generation of patient individual NAM devices for neonates with bilateral cleft lip and palate (BCLP) and present results of software validation. METHODS:The algorithm was implemented utilizing Python 2.7 and Blender 2.78a based on 17 digitized (3D-scanning) impressions of maxillae with BCLP" ;
-    sc:name "RapidNAM" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31403406" .
-
 <https://bio.tools/RaptorX-ComplexContact> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0128,
         edam:topic_2275,
@@ -64459,7 +51816,7 @@ If, later on, you need to adjust leaf area values, you need to provide a datafra
     sc:url "http://raptorx.uchicago.edu/ComplexContact/" .
 
 <https://bio.tools/RareLSD> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0821,
         edam:topic_2885,
@@ -64479,43 +51836,23 @@ RareLSD: A Database for Human Lysosomal Enzymes. RareLSD is a manually curated d
     sc:name "RareLSD" ;
     sc:url "https://webs.iiitd.edu.in/raghava/rarelsd/" .
 
-<https://bio.tools/RatHat> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0196,
-        edam:topic_3304,
-        edam:topic_3421 ;
-    sc:citation <https://doi.org/10.1101/868422> ;
-    sc:description """A self-targeting printable brain implant system.
-
-Abstract There has not been a major change in how neuroscientists approach stereotaxic methods in decades. Here we present a new stereotaxic method that improves on traditional approaches by reducing costs, training, surgical time, and aiding repeatability. The RatHat brain implantation system is a 3D printable stereotaxic device for rats that is fabricated prior to surgery and fits to the shape of the skull. RatHat builds are directly implanted into the brain without the need for head-leveling or coordinate-mapping during surgery. The RatHat system can be used in conjunction with the traditional u-frame stereotaxic device, but does not require the use of a micromanipulator for successful implantations. Each RatHat system contains several primary components including the implant for mounting intracranial components, the surgical stencil for targeting drill sites, and the protective cap for impacts and debris.
-
-||| HOMEPAGE MISSING!""" ;
-    sc:featureList edam:operation_0310,
-        edam:operation_3891 ;
-    sc:name "RatHat" ;
-    sc:url "https://doi.org/10.1101/868422" .
-
 <https://bio.tools/RatMine> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2353" ;
-            sc:name "Ontology data" ;
-            sc:sameAs "http://edamontology.org/data_2353" ],
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:name "Sequence features" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ] ;
+            sc:additionalType "http://edamontology.org/data_2353" ;
+            sc:name "Ontology data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3786" ;
-            sc:name "Query script" ;
-            sc:sameAs "http://edamontology.org/data_3786" ],
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:name "Sequence features" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ],
+            sc:additionalType "http://edamontology.org/data_3786" ;
+            sc:name "Query script" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3753" ;
-            sc:name "Over-representation data" ;
-            sc:sameAs "http://edamontology.org/data_3753" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3753" ;
+            sc:name "Over-representation data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application",
         "Web service" ;
@@ -64538,7 +51875,7 @@ Abstract There has not been a major change in how neuroscientists approach stere
     sc:url "http://ratmine.mcw.edu/ratmine" .
 
 <https://bio.tools/Ratcave> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3382 ;
     sc:citation <https://doi.org/10.3758/S13428-019-01245-X>,
@@ -64555,17 +51892,8 @@ Abstract There has not been a major change in how neuroscientists approach stere
     sc:url "https://github.com/ratcave/ratcave" ;
     biotools:primaryContact "Del Grosso NA" .
 
-<https://bio.tools/Rationalizing_Diels-Alderase_Activity_Pd2L4_Self-Assembled_Metallocages> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0176 ;
-    sc:citation <https://doi.org/10.26434/CHEMRXIV.9576644.V1> ;
-    sc:description "> VERY_LOW CONFIDENCE! | > HOMEPAGE MISSING! | > CORRECT NAME OF TOOL COULD ALSO BE 'Pd2L4', 'cgbind', 'metallocages', 'proficiencies' | Rationalizing the “Diels-Alderase” Activity of Pd2L4 Self-Assembled Metallocages | Self-assembled cages have emerged as novel platforms to explore bio-inspired catalysis. While many different size and shape supramolecular structures are now readily accessible, only a few are proficient catalysts. Here we show that a simple and efficient DFT-based methodology i is sufficient to accurately reproduce experimental binding affinities (MAD = 1.9 kcal mol-1) and identify the catalytic and non-catalytic Diels-Alder proficiencies (>90 % accuracy) of two homologous Pd2L4 metallocages with a variety of substrates. We demonstrate how subtle structural differences in the cage framework affect binding and catalysis, highlighting the critical role of structural dynamics and flexibility on catalytic activity" ;
-    sc:featureList edam:operation_2476,
-        edam:operation_3216 ;
-    sc:name "Rationalizing Diels-Alderase Activity Pd2L4 Self-Assembled Metallocages" ;
-    sc:url "https://doi.org/10.26434/CHEMRXIV.9576644.V1" .
-
 <https://bio.tools/Ravages> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0625,
@@ -64586,7 +51914,7 @@ Abstract There has not been a major change in how neuroscientists approach stere
     biotools:primaryContact "Hervé Perdry" .
 
 <https://bio.tools/RaxmlGUI> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0769,
         edam:topic_3293 ;
@@ -64597,7 +51925,7 @@ Abstract There has not been a major change in how neuroscientists approach stere
     sc:url "http://antonellilab.github.io/raxmlGUI/" .
 
 <https://bio.tools/Rbbt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0769,
         edam:topic_3168,
@@ -64622,7 +51950,7 @@ Rbbt wrapper for the Variant Effect Predictor. Auto-downloads and installs the s
     sc:url "https://github.com/Rbbt-Workflows" .
 
 <https://bio.tools/Rchimerism> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3421,
         edam:topic_3520 ;
@@ -64634,7 +51962,7 @@ Rbbt wrapper for the Variant Effect Predictor. Auto-downloads and installs the s
     sc:url "https://github.com/BioHPC/Rchimerism" .
 
 <https://bio.tools/ReCirc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0632,
         edam:topic_3512,
@@ -64655,7 +51983,7 @@ Rbbt wrapper for the Variant Effect Predictor. Auto-downloads and installs the s
     sc:url "http://licpathway.net:8080/ReCirc/" .
 
 <https://bio.tools/ReDU> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3172,
         edam:topic_3520 ;
@@ -64670,7 +51998,7 @@ Rbbt wrapper for the Variant Effect Predictor. Auto-downloads and installs the s
     sc:url "https://redu.ucsd.edu/" .
 
 <https://bio.tools/ReFDash> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3174,
         edam:topic_3697,
         edam:topic_3837 ;
@@ -64683,7 +52011,7 @@ Rbbt wrapper for the Variant Effect Predictor. Auto-downloads and installs the s
     sc:url "https://web.rniapps.net/iVikodak/refdash/" .
 
 <https://bio.tools/ReFernment> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3170,
@@ -64706,7 +52034,7 @@ Rbbt wrapper for the Variant Effect Predictor. Auto-downloads and installs the s
     biotools:primaryContact "Tanner Robison" .
 
 <https://bio.tools/ReGEO> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0218,
@@ -64729,7 +52057,7 @@ Rbbt wrapper for the Variant Effect Predictor. Auto-downloads and installs the s
     biotools:primaryContact "Canglin Wu" .
 
 <https://bio.tools/ReMap2020> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_0780,
         edam:topic_3169,
@@ -64747,32 +52075,8 @@ Examples: FOXA1, MCF-7, ENCSR440VKE, GSE41820, Col-0_seedling, WRKY33 Advanced s
     sc:name "ReMap" ;
     sc:url "http://remap.univ-amu.fr" .
 
-<https://bio.tools/ReMap_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0749,
-        edam:topic_0780,
-        edam:topic_3169,
-        edam:topic_3295,
-        edam:topic_3512 ;
-    sc:citation <https://doi.org/10.1093/NAR/GKZ945>,
-        "pubmed:31665499" ;
-    sc:description """a database of regulatory regions from an integrative analysis of Human and Arabidopsis DNA-binding sequencing experiments.
-
-Examples: FOXA1, MCF-7, ENCSR440VKE, GSE41820, Col-0_seedling, WRKY33 Advanced search.
-
-||| NAME EQUAL TO (PUB. DIFFERENT) bio.tools/inserm-remap.
-
-||| NAME (ReMap) SIMILAR TO (PUB. DIFFERENT) bio.tools/remap (remap).
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'ReMap 2020'""" ;
-    sc:featureList edam:operation_2421,
-        edam:operation_3192,
-        edam:operation_3208,
-        edam:operation_3222 ;
-    sc:name "ReMap_autogenerated" ;
-    sc:url "http://remap.univ-amu.fr" .
-
 <https://bio.tools/ReProMin> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0204,
         edam:topic_0602 ;
@@ -64785,7 +52089,7 @@ Examples: FOXA1, MCF-7, ENCSR440VKE, GSE41820, Col-0_seedling, WRKY33 Advanced s
     sc:url "https://github.com/utrillalab/repromin" .
 
 <https://bio.tools/ReQTL> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0203,
         edam:topic_0625,
@@ -64803,7 +52107,7 @@ This toolkit contains the required scripts to transform sequencing files into Re
     sc:url "https://github.com/HorvathLab/ReQTL" .
 
 <https://bio.tools/ReSimNet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3336,
@@ -64820,7 +52124,7 @@ This toolkit contains the required scripts to transform sequencing files into Re
     sc:url "https://github.com/dmis-lab/ReSimNet" .
 
 <https://bio.tools/ReVac> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0121,
         edam:topic_0160,
@@ -64839,7 +52143,7 @@ BACKGROUND:Reverse vaccinology accelerates the discovery of potential vaccine ca
     sc:url "https://github.com/admelloGithub/ReVac-package" .
 
 <https://bio.tools/ReaDDy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0176,
         edam:topic_0602,
@@ -64861,17 +52165,8 @@ BACKGROUND:Reverse vaccinology accelerates the discovery of potential vaccine ca
     sc:url "https://readdy.github.io/" ;
     biotools:primaryContact "ReaDDy" .
 
-<https://bio.tools/Reachy> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3474 ;
-    sc:citation <https://doi.org/10.3389/FNBOT.2019.00065>,
-        "pmcid:PMC6703080",
-        "pubmed:31474846" ;
-    sc:description "> HOMEPAGE MISSING! | 3D-Printed Human-Like Robotic Arm as a Testbed for Human-Robot Control Strategies | To this day, despite the increasing motor capability of robotic devices, elaborating efficient control strategies is still a key challenge in the field of humanoid robotic arms. In particular, providing a human \"pilot\" with efficient ways to drive such a robotic arm requires thorough testing prior to integration into a finished system. Additionally, when it is needed to preserve anatomical consistency between pilot and robot, such testing requires to employ devices showing human-like features. To fulfill this need for a biomimetic test platform, we present Reachy, a human-like life-scale robotic arm with seven joints from shoulder to wrist. Although Reachy does not include a poly-articulated hand and is therefore more suitable for studying reaching than manipulation, a robotic hand prototype from available third-party projects could be integrated to it" ;
-    sc:name "Reachy" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31474846" .
-
 <https://bio.tools/ReactPRED> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0602,
@@ -64893,7 +52188,7 @@ BACKGROUND:Reverse vaccinology accelerates the discovery of potential vaccine ca
         "Tae Yong Kim" .
 
 <https://bio.tools/Read-SpaM> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0121,
         edam:topic_0194,
@@ -64914,7 +52209,7 @@ Read-SpaM. Test runs on simulated reads from bacterial genomes show that our app
     sc:url "https://github.com/burkhard-morgenstern/Read-SpaM" .
 
 <https://bio.tools/Real-time> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3172,
         edam:topic_3300,
         edam:topic_3390,
@@ -64931,14 +52226,14 @@ Read-SpaM. Test runs on simulated reads from bacterial genomes show that our app
     sc:url "https://github.com/ijmiller2/RealTimeUrineMetabolomics" .
 
 <https://bio.tools/RealityConvert> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "Tool for preparing 3D models of biochemical structures for augmented and virtual reality." ;
     sc:name "RealityConvert" ;
     sc:url "http://www.realityconvert.com/" ;
     biotools:primaryContact "Denis Fourches" .
 
 <https://bio.tools/Recentrifuge> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3174,
         edam:topic_3697,
@@ -64961,7 +52256,7 @@ Read-SpaM. Test runs on simulated reads from bacterial genomes show that our app
     biotools:primaryContact "Jose Manuel Martí" .
 
 <https://bio.tools/Reciprocal_Best_Hits_-_Best_Bidirectional_Hits> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0091,
@@ -64983,29 +52278,8 @@ Read-SpaM. Test runs on simulated reads from bacterial genomes show that our app
     sc:url "https://www.protocols.io/view/reciprocal-best-hit-blast-q3rdym6" ;
     biotools:primaryContact <https://orcid.org/0000-0002-6981-397X> .
 
-<https://bio.tools/ReconSocket> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3077,
-        edam:topic_3384,
-        edam:topic_3444 ;
-    sc:citation <https://doi.org/10.1088/1361-6560/AB3E99>,
-        "pubmed:31461412" ;
-    sc:description "> MEDIUM CONFIDENCE! | > HOMEPAGE MISSING! | a low-latency raw data streaming interface for real-time MRI-guided radiotherapy | With the recent advent of hybrid MRI-guided radiotherapy systems, continuous intra-fraction MR imaging for motion monitoring has become feasible. The ability to perform real-time custom image reconstructions is however often lacking. In this work we present a low-latency streaming solution, ReconSocket, which provides a real-time stream of k-space data from the magnetic resonance imaging (MRI) to custom reconstruction servers. We determined the performance of the data streaming by measuring the streaming latency (i.e. non-zero time delay due to data transfer and processing) and jitter (i.e. deviations from periodicity) using an ultra-fast 1D MRI acquisition of a moving phantom. Simultaneously, its position was recorded with near-zero time delay" ;
-    sc:featureList edam:operation_3629 ;
-    sc:name "ReconSocket" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31461412" .
-
-<https://bio.tools/ReconViguRation> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3318,
-        edam:topic_3421,
-        edam:topic_3855 ;
-    sc:citation <https://doi.org/10.1109/TVCG.2019.2932239>,
-        "pubmed:31403423" ;
-    sc:description "> MEDIUM CONFIDENCE! | > HOMEPAGE MISSING! | > CORRECT NAME OF TOOL COULD ALSO BE 'keyboards VR', 'keyboards', 'VR', 'physical keyboards VR' | Reconfiguring Physical Keyboards in Virtual Reality | Physical keyboards are common peripherals for personal computers and are efficient standard text entry devices. Recent research has investigated how physical keyboards can be used in immersive head-mounted display-based Virtual Reality (VR). So far, the physical layout of keyboards has typically been transplanted into VR for replicating typing experiences in a standard desktop environment. In this paper, we explore how to fully leverage the immersiveness of VR to change the input and output characteristics of physical keyboard interaction within a VR environment. This allows individual physical keys to be reconfigured to the same or different actions and visual output to be distributed in various ways across the VR representation of the keyboard" ;
-    sc:name "ReconViguRation" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31403423" .
-
 <https://bio.tools/ReferenceSeeker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_3293 ;
@@ -65021,7 +52295,7 @@ Read-SpaM. Test runs on simulated reads from bacterial genomes show that our app
     sc:url "https://github.com/oschwengers/referenceseeker" .
 
 <https://bio.tools/Reference_Panel_Reconstruction> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3305,
@@ -65041,7 +52315,7 @@ Read-SpaM. Test runs on simulated reads from bacterial genomes show that our app
     sc:url "https://github.com/Abyss-bai/reference-panel-reconstruction" .
 
 <https://bio.tools/Refgenie> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web API",
         "Web service" ;
@@ -65057,7 +52331,7 @@ Read-SpaM. Test runs on simulated reads from bacterial genomes show that our app
     sc:url "http://refgenie.databio.org" .
 
 <https://bio.tools/RegLinker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0749,
         edam:topic_3855 ;
@@ -65073,36 +52347,7 @@ Read-SpaM. Test runs on simulated reads from bacterial genomes show that our app
     sc:url "https://github.com/Murali-group/RegLinker" .
 
 <https://bio.tools/RegSNPs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
-    sc:applicationSubCategory edam:topic_0166,
-        edam:topic_0634,
-        edam:topic_2885,
-        edam:topic_3320,
-        edam:topic_3512 ;
-    sc:citation <https://doi.org/10.1186/S13059-019-1847-4>,
-        "pmcid:PMC6883696",
-        "pubmed:31779641" ;
-    sc:description """a computational framework for predicting pathogenic impact of intronic single nucleotide variants.
-
-Predict disease-causing probability of human intronic SNVs.
-
-regSNP-intron is a tool which predicts disease-causing probability of human intronic single nucleotide variants (iSNVs).
-
-regsnp-intron predicts the disease-causing probability of intronic single nucleotide variants (iSNVs) based on both genomic and protein structural features.
-
-ANNOVAR (>= 2016Feb01): Follow the instructions at http://annovar.openbioinformatics.org/en/latest to install, and prepare Ensembl gene annotation.
-
-Or paste input here (use example).
-
-Or upload a file size limit: 10K rows""" ;
-    sc:featureList edam:operation_0417,
-        edam:operation_2499,
-        edam:operation_3461 ;
-    sc:license "MIT" ;
-    sc:name "RegSNPs-intron" ;
-    sc:url "https://regsnps-intron.ccbb.iupui.edu" .
-
-<https://bio.tools/RegSNPs-intron> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0166,
         edam:topic_0634,
         edam:topic_2885,
@@ -65132,7 +52377,7 @@ Or upload a file size limit: 10K rows""" ;
     sc:url "https://regsnps-intron.ccbb.iupui.edu" .
 
 <https://bio.tools/RegScan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3172,
@@ -65153,7 +52398,7 @@ Or upload a file size limit: 10K rows""" ;
     biotools:primaryContact "T. Haller" .
 
 <https://bio.tools/RegulationSpotter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3325 ;
     sc:citation <https://doi.org/10.1093/nar/gkz327>,
@@ -65168,28 +52413,8 @@ Phenotypic data can be used to focus on likely disease genes.""" ;
         "Windows" ;
     sc:url "https://www.regulationspotter.org/" .
 
-<https://bio.tools/Reintroducing_mothur> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0659,
-        edam:topic_3174,
-        edam:topic_3697 ;
-    sc:citation <https://doi.org/10.1128/AEM.02343-19>,
-        "pubmed:31704678" ;
-    sc:description """Welcome to the website for the mothur project, initiated by Dr.
-
-We will be offering an R workshop December 18-20, 2019.
-
-Subscribe to the mothur mailing list.
-
-||| COMMON LINK WITH (PUB. & NAME DIFFERENT) bio.tools/Mothur (MOTHUR.ORG ; MOTHUR.ORG/wiki), bio.tools/indices_diversity (MOTHUR.ORG/wiki).
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'mothur'""" ;
-    sc:featureList edam:operation_0337,
-        edam:operation_2422 ;
-    sc:name "Reintroducing mothur" ;
-    sc:url "https://www.mothur.org" .
-
 <https://bio.tools/RelocaTE2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0199,
         edam:topic_0780,
@@ -65213,7 +52438,7 @@ RelocaTE2 is an improved version of RelocaTE (Robb et al., 2013). RelocaTE2 is h
     sc:url "https://github.com/stajichlab/RelocaTE2" .
 
 <https://bio.tools/RemeDB> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0160,
         edam:topic_0821,
@@ -65236,7 +52461,7 @@ A hassle-free tool to predict bioremediation enzymes from metagenomic datasets""
     sc:url "https://www.niot.res.in/Remedb/" .
 
 <https://bio.tools/ReorientExpress> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3170,
         edam:topic_3308,
@@ -65258,7 +52483,7 @@ ReorientExpress is a program to create, test and apply models to predict the 5'-
     sc:url "https://github.com/comprna/reorientexpress" .
 
 <https://bio.tools/RepEx> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0157,
@@ -65278,7 +52503,7 @@ ReorientExpress is a program to create, test and apply models to predict the 5'-
     biotools:primaryContact "Professor K. Sekar" .
 
 <https://bio.tools/RepeatFiller> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0621,
         edam:topic_0749,
@@ -65291,29 +52516,8 @@ ReorientExpress is a program to create, test and apply models to predict the 5'-
     sc:name "RepeatFiller" ;
     sc:url "https://github.com/hillerlab/GenomeAlignmentTools" .
 
-<https://bio.tools/RepeatFiller_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0080,
-        edam:topic_0621,
-        edam:topic_0749,
-        edam:topic_0798 ;
-    sc:citation <https://doi.org/10.1093/GIGASCIENCE/GIZ132>,
-        "pmcid:PMC6862929",
-        "pubmed:31742600" ;
-    sc:description """RepeatFiller newly identifies megabases of aligning repetitive sequences and improves annotations of conserved non-exonic elements.
-
-Index of /hillerlab/RepeatFiller/.
-
-||| NAME EQUAL TO (PUB. DIFFERENT) bio.tools/RepeatFiller.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'GenomeAlignmentTools'""" ;
-    sc:featureList edam:operation_0491,
-        edam:operation_0495,
-        edam:operation_3182 ;
-    sc:name "RepeatFiller_autogenerated" ;
-    sc:url "https://bds.mpi-cbg.de/hillerlab/RepeatFiller/" .
-
 <https://bio.tools/RepeatModeler2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0157,
         edam:topic_0196,
         edam:topic_0621,
@@ -65328,33 +52532,30 @@ Index of /hillerlab/RepeatFiller/.
     sc:url "https://github.com/Dfam-consortium/RepeatModeler" .
 
 <https://bio.tools/RepeatScout> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:citation <https://doi.org/10.1093/bioinformatics/bti1018>,
+        "pubmed:15961478" ;
     sc:description "RepeatScout is a tool to discover repetitive substrings in DNA." ;
     sc:name "RepeatScout" ;
     sc:url "http://bix.ucsd.edu/repeatscout/" .
 
 <https://bio.tools/RepetDB> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2353" ;
-            sc:name "Ontology data" ;
-            sc:sameAs "http://edamontology.org/data_2353" ],
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:name "Sequence features" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ] ;
+            sc:additionalType "http://edamontology.org/data_2353" ;
+            sc:name "Ontology data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3753" ;
-            sc:name "Over-representation data" ;
-            sc:sameAs "http://edamontology.org/data_3753" ],
+            sc:additionalType "http://edamontology.org/data_3786" ;
+            sc:name "Query script" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3786" ;
-            sc:name "Query script" ;
-            sc:sameAs "http://edamontology.org/data_3786" ],
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:name "Sequence features" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3753" ;
+            sc:name "Over-representation data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application",
         "Web service" ;
@@ -65378,7 +52579,7 @@ Index of /hillerlab/RepeatFiller/.
     sc:url "http://urgi.versailles.inra.fr/repetdb" .
 
 <https://bio.tools/Res2Net> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3382,
         edam:topic_3474 ;
     sc:citation <https://doi.org/10.1109/TPAMI.2019.2938758>,
@@ -65390,7 +52591,7 @@ Index of /hillerlab/RepeatFiller/.
     sc:url "https://mmcheng.net/res2net/" .
 
 <https://bio.tools/ResDisMapper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0621,
         edam:topic_3053 ;
@@ -65405,7 +52606,7 @@ Management of biological invasions and conservation activity in the fight agains
     sc:url "https://github.com/takfung/ResDisMapper" .
 
 <https://bio.tools/ResPRE> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0602,
@@ -65426,7 +52627,7 @@ Management of biological invasions and conservation activity in the fight agains
     biotools:primaryContact "Yang Li" .
 
 <https://bio.tools/ResidueDisorder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0130,
         edam:topic_0736,
         edam:topic_3538 ;
@@ -65441,7 +52642,7 @@ Management of biological invasions and conservation activity in the fight agains
     sc:url "https://www.rosettacommons.org/docs/latest/ResidueDisorder" .
 
 <https://bio.tools/RestraintLib> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0078,
         edam:topic_0081 ;
@@ -65455,7 +52656,7 @@ Management of biological invasions and conservation activity in the fight agains
     sc:url "http://achesym.ibch.poznan.pl/restraintlib/" .
 
 <https://bio.tools/RetSynth> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3398,
         edam:topic_3407 ;
@@ -65470,17 +52671,8 @@ Management of biological invasions and conservation activity in the fight agains
     sc:name "RetSynth" ;
     sc:url "https://github.com/sandialabs/RetSynth" .
 
-<https://bio.tools/Review_Blockchain_Architecture_Consensus_Protocols> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0749,
-        edam:topic_3263,
-        edam:topic_3474 ;
-    sc:citation <https://doi.org/10.20944/PREPRINTS201908.0311.V1> ;
-    sc:description "> VERY_LOW CONFIDENCE! | > CORRECT NAME OF TOOL COULD ALSO BE 'blockchain' | A Review of Blockchain Architecture and Consensus Protocols | A comprehensive distributed ledger cloud platform to provision blockchain networks, join other organizations, and deploy & run smart contracts to update and query the ledger. Reliably share data and conduct trusted transactions with suppliers, banks, and other trade partners through integration with existing or new cloud-based or on-premises applications | We use cookies to provide and improve our services. By using our site, you consent to cookies. Learn More | Your search did not match any results | Securely, reliably extend business processes and accelerate B2B transactions" ;
-    sc:name "Review Blockchain Architecture Consensus Protocols" ;
-    sc:url "https://cloud.oracle.com/en_US/blockchain" .
-
 <https://bio.tools/Rhapsody> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0154,
         edam:topic_0749 ;
@@ -65492,33 +52684,8 @@ Management of biological invasions and conservation activity in the fight agains
     sc:name "Rhapsody" ;
     sc:url "http://rhapsody.csb.pitt.edu" .
 
-<https://bio.tools/RiCBM86> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0152,
-        edam:topic_0154,
-        edam:topic_0593,
-        edam:topic_0623,
-        edam:topic_0749 ;
-    sc:citation <https://doi.org/10.1111/FEBS.15117>,
-        "pubmed:31693302" ;
-    sc:description """Molecular insight into a new low-affinity xylan binding module from the xylanolytic gut symbiont Roseburia intestinalis.
-
-CBM1 CBM2 CBM3 CBM4 CBM5 CBM6 CBM7 CBM8 CBM9 CBM10 CBM11 CBM12 CBM13 CBM14 CBM15 CBM16 CBM17 CBM18 CBM19 CBM20 CBM21 CBM22 CBM23 CBM24 CBM25 CBM26 CBM27 CBM28 CBM29 CBM30 CBM31 CBM32 CBM33 CBM34 CBM35 CBM36 CBM37 CBM38 CBM39 CBM40 CBM41 CBM42 CBM43 CBM44 CBM45 CBM46 CBM47 CBM48 CBM49 CBM50 CBM51 CBM52 CBM53 CBM54 CBM55 CBM56 CBM57 CBM58 CBM59 CBM60 CBM61 CBM62 CBM63 CBM64 CBM65 CBM66 CBM67 CBM68 CBM69 CBM70 CBM71 CBM72 CBM73 CBM74 CBM75 CBM76 CBM77 CBM78 CBM79 CBM80 CBM81 CBM82 CBM83 CBM84 CBM85 CBM86 NC.
-
-Family Tax_id Organism name Protein name GenBank accession Uniprot accession PDB accession Carb_ligand EC number Known activities Mechanisms Clan Site.
-
-Carbohydrate-Binding Module Family 86.
-
-||| COMMON LINK WITH (PUB. & NAME DIFFERENT) bio.tools/cazy (CAZY.ORG).
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'CBM86'""" ;
-    sc:featureList edam:operation_0387,
-        edam:operation_2575,
-        edam:operation_3455 ;
-    sc:name "RiCBM86" ;
-    sc:url "http://www.cazy.org/CBM86.html" .
-
 <https://bio.tools/RiboFlow> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0196,
         edam:topic_0203,
@@ -65533,7 +52700,7 @@ Carbohydrate-Binding Module Family 86.
     sc:url "https://github.com/ribosomeprofiling/riboflow" .
 
 <https://bio.tools/RiboPy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0196,
         edam:topic_0203,
@@ -65548,7 +52715,7 @@ Carbohydrate-Binding Module Family 86.
     sc:url "https://ribopy.readthedocs.io/en/latest/" .
 
 <https://bio.tools/RiboR> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0659,
         edam:topic_0769,
@@ -65563,7 +52730,7 @@ Carbohydrate-Binding Module Family 86.
     sc:url "https://ribosomeprofiling.github.io" .
 
 <https://bio.tools/RiboVIEW> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0659,
         edam:topic_0749,
@@ -65585,7 +52752,7 @@ This is package RiboVIEW for Visualization, Quality and Statistics for Ribosome
     sc:url "https://github.com/carinelegrand/RiboVIEW" .
 
 <https://bio.tools/Ribopeaks> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3474,
@@ -65606,7 +52773,7 @@ This is package RiboVIEW for Visualization, Quality and Statistics for Ribosome
     biotools:primaryContact "Rafael Mazer Etto" .
 
 <https://bio.tools/RiceRelativesGD> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_0623,
         edam:topic_3293 ;
@@ -65621,7 +52788,7 @@ This is package RiboVIEW for Visualization, Quality and Statistics for Ribosome
     sc:url "http://ibi.zju.edu.cn/ricerelativesgd/" .
 
 <https://bio.tools/Rice_Galaxy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0780,
@@ -65644,7 +52811,7 @@ This is package RiboVIEW for Visualization, Quality and Statistics for Ribosome
     biotools:primaryContact <https://orcid.org/0000-0001-8512-144X> .
 
 <https://bio.tools/Rice_Genome_Hub> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0780,
         edam:topic_3321,
         edam:topic_3366 ;
@@ -65661,20 +52828,8 @@ This is package RiboVIEW for Visualization, Quality and Statistics for Ribosome
         <https://orcid.org/0000-0001-8153-276X>,
         <https://orcid.org/0000-0003-1849-1269> .
 
-<https://bio.tools/RoCoLe> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0780,
-        edam:topic_3382,
-        edam:topic_3474 ;
-    sc:citation <https://doi.org/10.1016/J.DIB.2019.104414>,
-        "pmcid:PMC6727496",
-        "pubmed:31516934" ;
-    sc:description "> HOMEPAGE MISSING! | A robusta coffee leaf images dataset for evaluation of machine learning based methods in plant diseases recognition | In this article we introduce a robusta coffee leaf images dataset called RoCoLe. The dataset contains 1560 leaf images with visible red mites and spots (denoting coffee leaf rust presence) for infection cases and images without such structures for healthy cases. In addition, the data set includes annotations regarding objects (leaves), state (healthy and unhealthy) and the severity of disease (leaf area with spots). Images were all obtained in real-world conditions in the same coffee plants field using a smartphone camera. RoCoLe data set facilitates the evaluation of the performance of machine learning algorithms used in image segmentation and classification problems related to plant diseases recognition. The current dataset is freely and publicly available at https: doi.org 10.17632 c5yvn32dzg. 2" ;
-    sc:featureList edam:operation_3553 ;
-    sc:name "RoCoLe" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31516934" .
-
 <https://bio.tools/RobNorm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3172,
         edam:topic_3520 ;
@@ -65687,7 +52842,7 @@ This is package RiboVIEW for Visualization, Quality and Statistics for Ribosome
     sc:url "https://github.com/mwgrassgreen/RobNorm" .
 
 <https://bio.tools/RocaSec> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0123,
         edam:topic_0736,
         edam:topic_0749 ;
@@ -65702,16 +52857,8 @@ RocaSec is a standalone cross-platform package which features an easy-to-use GUI
     sc:name "RocaSec" ;
     sc:url "https://github.com/ahmedaq/RocaSec" .
 
-<https://bio.tools/Romedi> a sc:SoftwareApplication ;
-    sc:citation <https://doi.org/10.3233/SHTI190187>,
-        "pubmed:31437889" ;
-    sc:description "> MEDIUM CONFIDENCE! | > HOMEPAGE MISSING! | An Open Data Source About French Drugs on the Semantic Web | The W3C project, \"Linking Open Drug Data\" (LODD), linked several publicly available sources of drug data together. So far, French data, like marketed drugs and their summary of product characteristics, were not integrated and remained difficult to query. In this paper, we present Romedi (Référentiel Ouvert du Médicament), an open dataset that links French data on drugs to international resources. The principles and standard recommendations created by the W3C for sharing information were adopted. Romedi was connected to the Unified Medical Language System and DrugBank, two central resources of the LODD project. A SPARQL endpoint is available to query Romedi and services are provided to annotate textual content with Romedi terms. This paper describes its content, its services, its links to external resources, and expected future developments" ;
-    sc:featureList edam:operation_0224 ;
-    sc:name "Romedi" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31437889" .
-
 <https://bio.tools/RotInvRBM> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3315,
         edam:topic_3382,
         edam:topic_3474 ;
@@ -65722,7 +52869,7 @@ RocaSec is a standalone cross-platform package which features an easy-to-use GUI
     sc:url "https://bitbucket.org/tuttoweb/rotinvrbm" .
 
 <https://bio.tools/RsHSF> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_0780,
         edam:topic_3170,
@@ -65740,7 +52887,7 @@ RocaSec is a standalone cross-platform package which features an easy-to-use GUI
     sc:url "http://www.cibiv.at/services/hsf/info" .
 
 <https://bio.tools/RsQTL> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3170,
         edam:topic_3308,
@@ -65759,7 +52906,7 @@ This toolkit contains the required scripts to transform sequencing files into Rs
     sc:url "https://github.com/HorvathLab/RsQTL" .
 
 <https://bio.tools/RuleBuilder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2259,
@@ -65777,52 +52924,8 @@ This toolkit contains the required scripts to transform sequencing files into Rs
     sc:softwareHelp <https://github.com/RuleWorld/RuleBuilder/blob/master/README.md> ;
     sc:url "https://github.com/RuleWorld/RuleBuilder" .
 
-<https://bio.tools/RumimiR> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0659,
-        edam:topic_3068,
-        edam:topic_3170,
-        edam:topic_3500,
-        edam:topic_3512 ;
-    sc:citation <https://doi.org/10.1093/DATABASE/BAZ099>,
-        "pmcid:PMC6790497",
-        "pubmed:31608376" ;
-    sc:description """a detailed microRNA database focused on ruminant species.
-
-The ovine, bovine and caprine miRNA database.
-
-The bovine, caprine and ovine miRNA database.
-
-Bourdon,C., Bardou,P, Aujean,A. et al. RumimiR: a detailed microRNA database focused on ruminant species.
-
-If you make use of the presented data, please cite our article.
-
-“1” in second position means that the microRNA is not already listed in the RumimiR database (a microRNA occurring in different publications is more likely to be a true microRNA),.
-
-||| COMMON LINK WITH (PUB. & NAME DIFFERENT) bio.tools/drap (SIGENAE.ORG)""" ;
-    sc:featureList edam:operation_0224,
-        edam:operation_0463,
-        edam:operation_3695,
-        edam:operation_3792 ;
-    sc:name "RumimiR" ;
-    sc:url "http://rumimir.sigenae.org/" .
-
-<https://bio.tools/Rural> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0621,
-        edam:topic_3306,
-        edam:topic_3810 ;
-    sc:citation <https://doi.org/10.20944/PREPRINTS201912.0161.V1> ;
-    sc:description """Correlation of Knowledge as a Basic Element for Generating Tourism Sustainable Projects in Rural Communities.
-
-impactos socioterritoriales en San Juan Atzingo, México.
-
-El desarrollo del turismo rural en San Juan Atzingo, estado de México, ha sido impulsado por parte de diversos organismos internacionales, dependencias del Gobierno Federal, empresas del sector privado e incluso algunas organizaciones de la sociedad civil.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'tourism', 'communities', 'feeling', 'Tlahuica'""" ;
-    sc:name "Rural" ;
-    sc:url "http://revistas.javeriana.edu.co/index.php/desarrolloRural/article/view/6108" .
-
 <https://bio.tools/RxnSim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0821,
         edam:topic_2258,
@@ -65844,7 +52947,7 @@ El desarrollo del turismo rural en San Juan Atzingo, estado de México, ha sido
         "Varun Giri" .
 
 <https://bio.tools/S-conLSH> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3168,
         edam:topic_3314 ;
@@ -65864,7 +52967,7 @@ Spaced-context based Locality Sensitive Hashing""" ;
     sc:url "https://github.com/anganachakraborty/S-conLSH" .
 
 <https://bio.tools/S4TE> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0749 ;
     sc:citation <https://doi.org/10.1371/journal.pcbi.1006847>,
@@ -65881,7 +52984,7 @@ Spaced-context based Locality Sensitive Hashing""" ;
     sc:url "http://sate.cirad.fr" .
 
 <https://bio.tools/SAAVpedia> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
         edam:topic_0154,
@@ -65914,7 +53017,7 @@ Identification, functional annotation, and retrieval of single amino-acid varian
     sc:url "https://www.SAAVpedia.org/" .
 
 <https://bio.tools/SACMES> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0749,
         edam:topic_3370 ;
@@ -65928,7 +53031,7 @@ Identification, functional annotation, and retrieval of single amino-acid varian
     sc:url "https://github.com/netzlab/SACMES.git" .
 
 <https://bio.tools/SAD> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_3277 ;
     sc:citation <https://doi.org/10.7287/PEERJ.PREPRINTS.78V2> ;
@@ -65937,7 +53040,7 @@ Identification, functional annotation, and retrieval of single amino-acid varian
     sc:url "https://github.com/klocey/partitions" .
 
 <https://bio.tools/SAIM> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3382 ;
     sc:citation <https://doi.org/10.1038/S41598-019-48455-Z>,
@@ -65947,27 +53050,8 @@ Identification, functional annotation, and retrieval of single amino-acid varian
     sc:name "SAIM" ;
     sc:url "https://github.com/mjc449/SAIMscannerV3.git" .
 
-<https://bio.tools/SAINT_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0082,
-        edam:topic_0593,
-        edam:topic_2828,
-        edam:topic_3474,
-        edam:topic_3542 ;
-    sc:citation <https://doi.org/10.1101/786921> ;
-    sc:description """Self-Attention Augmented Inception-Inside-Inception Network Improves Protein Secondary Structure Prediction.
-
-Official Implementation of the paper SAINT.
-
-||| NAME EQUAL TO (PUB. DIFFERENT) bio.tools/saint""" ;
-    sc:featureList edam:operation_0267,
-        edam:operation_0474,
-        edam:operation_2488,
-        edam:operation_3904 ;
-    sc:name "SAINT_autogenerated" ;
-    sc:url "https://github.com/SAINTProtein/SAINT" .
-
 <https://bio.tools/SALSA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
         edam:topic_3125 ;
@@ -65983,7 +53067,7 @@ Official Implementation of the paper SAINT.
     sc:url "https://github.com/machinegun/SALSA" .
 
 <https://bio.tools/SALTClass> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0218,
         edam:topic_3063,
         edam:topic_3335,
@@ -66005,7 +53089,7 @@ saltclass (Short and Long Text Classifier) is a Python module for text classific
     sc:url "https://pypi.org/project/saltclass" .
 
 <https://bio.tools/SAMDUDE> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0622,
         edam:topic_3673 ;
@@ -66026,7 +53110,7 @@ SAMDUDE is a genomic sequence denoiser that operates on aligned SAM files. It bo
     sc:url "https://github.com/ihwang/SAMDUDE" .
 
 <https://bio.tools/SAME-clustering> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_3170,
         edam:topic_3308 ;
@@ -66046,7 +53130,7 @@ Although several methods have been recently developed to cluster single-cell RNA
     sc:url "https://github.com/yycunc/SAMEclustering" .
 
 <https://bio.tools/SAMIRIX> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3384,
         edam:topic_3452 ;
@@ -66060,7 +53144,7 @@ Although several methods have been recently developed to cluster single-cell RNA
     sc:url "https://github.com/neurodial/am_SAMIRIX.git" .
 
 <https://bio.tools/SAMMI> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0154,
         edam:topic_0602,
@@ -66081,22 +53165,8 @@ SAMMI is a web-based tool for the visualization of metabolic networks and relate
     sc:name "SAMMI" ;
     sc:url "http://www.SammiTool.com" .
 
-<https://bio.tools/SAMPL> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0209,
-        edam:topic_2275,
-        edam:topic_3277 ;
-    sc:citation <https://doi.org/10.1080/10610278.2018.1549327>,
-        "pmcid:PMC6760852",
-        "pubmed:31555042" ;
-    sc:description "> MEDIUM CONFIDENCE! | reference data for the sixth statistical assessment of modeling of proteins and ligands (SAMPL6) | From Wikipedia, the free encyclopedia | Jump to navigation Jump to search | SAMPL (Statistical Assessment of the Modeling of Proteins and Ligands) is a set of community-wide blind challenges aimed to advance computational techniques as standard predictive tools in rational drug design.[1][2][3][4][5] A broad range of biologically relevant systems with different sizes and levels of complexities including proteins, host guest complexes, and drug-like small molecules have been selected to test the latest modeling methods and force fields in SAMPL" ;
-    sc:featureList edam:operation_0455,
-        edam:operation_0482,
-        edam:operation_3642 ;
-    sc:name "SAMPL" ;
-    sc:url "https://en.wikipedia.org/wiki/SAMPL_Challenge" .
-
 <https://bio.tools/SAMbinder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application",
         "Web service" ;
@@ -66119,30 +53189,8 @@ SAMMI is a web-based tool for the visualization of metabolic networks and relate
     sc:url "https://webs.iiitd.edu.in/raghava/sambinder/" ;
     biotools:primaryContact "G.P.S. Raghava" .
 
-<https://bio.tools/SANAD> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0218 ;
-    sc:citation <https://doi.org/10.1016/J.DIB.2019.104076>,
-        "pmcid:PMC6700340",
-        "pubmed:31440535" ;
-    sc:description "> HOMEPAGE MISSING! | > CORRECT NAME OF TOOL COULD ALSO BE '57zpx667y9' | Single-label Arabic News Articles Dataset for automatic text categorization | Text Classification is one of the most popular Natural Language Processing (NLP) tasks. Text classification (aka categorization) is an active research topic in recent years. However, much less attention was directed towards this task in Arabic, due to the lack of rich representative resources for training an Arabic text classifier. Therefore, we introduce a large Single-labeled Arabic News Articles Dataset (SANAD) of textual data collected from three news portals. The dataset is a large one consisting of almost 200k articles distributed into seven categories that we offer to the research community on Arabic computational linguistics. We anticipate that this rich dataset would make a great aid for a variety of NLP tasks on Modern Standard Arabic (MSA) textual data, especially for single label text classification purposes" ;
-    sc:featureList edam:operation_3501 ;
-    sc:name "SANAD" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31440535" .
-
 <https://bio.tools/SAPH-ire> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
-    sc:applicationSubCategory edam:topic_0121,
-        edam:topic_0601,
-        edam:topic_3474 ;
-    sc:citation <https://doi.org/10.1101/731026> ;
-    sc:description "A Machine Learning Recommendation Method and Webtool for the Prediction of Functional Post-Translational Modifications | ABSTRACT Post-translational Modifications (PTMs), chemical or proteinaceous covalent alterations to the side chains of amino acid residues in proteins, are a rapidly expanding feature class of significant importance in cell biology. Due to a high burden of experimental proof and the lack of effective means for experimentalists to prioritize PTMs by functional significance, currently less than ~2% of all PTMs have an assigned biological function. Here, we describe a new artificial neural network model, SAPH-ire TFx for the functional prediction of experimentally observed eukaryotic PTMs. Unlike previous functional PTM prioritization models, SAPH-ire TFx is optimized with both receiver operating characteristic (ROC) and recall metrics that maximally capture the range of diverse feature sets comprising the functional modified eukaryotic proteome" ;
-    sc:featureList edam:operation_0417,
-        edam:operation_0480,
-        edam:operation_3755 ;
-    sc:name "SAPH-ire TFx" ;
-    sc:url "https://saphire.biosci.gatech.edu" .
-
-<https://bio.tools/SAPH-ire_TFx> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0601,
         edam:topic_3474 ;
@@ -66155,7 +53203,7 @@ SAMMI is a web-based tool for the visualization of metabolic networks and relate
     sc:url "https://saphire.biosci.gatech.edu" .
 
 <https://bio.tools/SASM-VGWAS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3360,
         edam:topic_3384,
@@ -66177,14 +53225,14 @@ SAMMI is a web-based tool for the visualization of metabolic networks and relate
 
 <https://bio.tools/SAUCIE> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2082" ;
-            sc:name "Matrix" ;
-            sc:sameAs "http://edamontology.org/data_2082" ] ;
+            sc:additionalType "http://edamontology.org/data_2082" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Matrix" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2082" ;
-            sc:name "Matrix" ;
-            sc:sameAs "http://edamontology.org/data_2082" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2082" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Matrix" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -66205,7 +53253,7 @@ SAMMI is a web-based tool for the visualization of metabolic networks and relate
     sc:url "https://github.com/KrishnaswamyLab/SAUCIE/" .
 
 <https://bio.tools/SAVER-X> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3308,
         edam:topic_3474 ;
@@ -66218,7 +53266,7 @@ SAMMI is a web-based tool for the visualization of metabolic networks and relate
     sc:url "http://singlecell.wharton.upenn.edu/saver-x/" .
 
 <https://bio.tools/SAXSDom> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0154,
         edam:topic_0196,
@@ -66244,7 +53292,7 @@ running /data/jh7x3/SAXSDom/db_tools/tools/cmake-2.8.12.2/bin/cmake -E create_sy
     sc:url "https://github.com/jianlin-cheng/SAXSDom" .
 
 <https://bio.tools/SAnDReS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_2275,
         edam:topic_3474 ;
@@ -66263,7 +53311,7 @@ running /data/jh7x3/SAXSDom/db_tools/tools/cmake-2.8.12.2/bin/cmake -E create_sy
     sc:url "https://github.com/azevedolab/sandres" .
 
 <https://bio.tools/SBL> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_2885,
@@ -66284,7 +53332,7 @@ running /data/jh7x3/SAXSDom/db_tools/tools/cmake-2.8.12.2/bin/cmake -E create_sy
     biotools:primaryContact "Meiyue Wang" .
 
 <https://bio.tools/SBM> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3172,
@@ -66301,7 +53349,7 @@ running /data/jh7x3/SAXSDom/db_tools/tools/cmake-2.8.12.2/bin/cmake -E create_sy
     sc:url "https://gitlab.com/biomodlih/sbm-for-correlation-based-networks" .
 
 <https://bio.tools/SBML2Modelica> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0202,
         edam:topic_0602,
         edam:topic_3314,
@@ -66316,7 +53364,7 @@ running /data/jh7x3/SAXSDom/db_tools/tools/cmake-2.8.12.2/bin/cmake -E create_sy
     sc:url "https://bitbucket.org/mclab/sbml2modelica" .
 
 <https://bio.tools/SBMLLint> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0821,
         edam:topic_2259,
@@ -66331,7 +53379,7 @@ running /data/jh7x3/SAXSDom/db_tools/tools/cmake-2.8.12.2/bin/cmake -E create_sy
     sc:url "https://github.com/ModelEngineering/SBMLLint" .
 
 <https://bio.tools/SBP_2019> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3170,
         edam:topic_3308 ;
@@ -66344,7 +53392,7 @@ running /data/jh7x3/SAXSDom/db_tools/tools/cmake-2.8.12.2/bin/cmake -E create_sy
     sc:url "https://github.com/pachterlab/SBP_2019/" .
 
 <https://bio.tools/SCALE> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3173,
         edam:topic_3474 ;
@@ -66367,7 +53415,7 @@ Lei Xiong, Kui Xu, Kang Tian, Yanqiu Shao, Lei Tang, Ge Gao, Michael Zhang, Tao
     sc:url "https://github.com/jsxlei/SCALE" .
 
 <https://bio.tools/SCANVIS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3320,
@@ -66388,7 +53436,7 @@ Lei Xiong, Kui Xu, Kang Tian, Yanqiu Shao, Lei Tang, Ge Gao, Michael Zhang, Tao
     biotools:primaryContact "Phaedra Agius" .
 
 <https://bio.tools/SCATTER_PHY> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3318,
         edam:topic_3474 ;
     sc:citation <https://doi.org/10.20944/PREPRINTS201910.0115.V1> ;
@@ -66398,7 +53446,7 @@ Lei Xiong, Kui Xu, Kang Tian, Yanqiu Shao, Lei Tang, Ge Gao, Michael Zhang, Tao
     sc:url "https://github.com/zz4fap/scatter-phy" .
 
 <https://bio.tools/SCDO> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0625,
         edam:topic_0634,
@@ -66414,7 +53462,7 @@ Lei Xiong, Kui Xu, Kang Tian, Yanqiu Shao, Lei Tang, Ge Gao, Michael Zhang, Tao
     sc:url "http://scdontology.h3abionet.org" .
 
 <https://bio.tools/SCDevDB> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
         edam:topic_2229,
@@ -66433,7 +53481,7 @@ PRESDB:pig RNA Editing database""" ;
     sc:url "https://scdevdb.deepomics.org" .
 
 <https://bio.tools/SCEptRe> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2814,
         edam:topic_2830,
         edam:topic_3489 ;
@@ -66448,7 +53496,7 @@ PRESDB:pig RNA Editing database""" ;
     sc:url "http://tools.iedb.org/sceptre" .
 
 <https://bio.tools/SCGid> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0203,
         edam:topic_0621,
@@ -66469,7 +53517,7 @@ Please note that this version of SCGid constitutes an early-release version that
     sc:url "http://www.github.com/amsesk/SCGid" .
 
 <https://bio.tools/SCHEMA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_2830,
         edam:topic_3170,
@@ -66484,7 +53532,7 @@ Please note that this version of SCGid constitutes an early-release version that
     sc:url "http://schema.csail.mit.edu" .
 
 <https://bio.tools/SCIFIL> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0199,
         edam:topic_2640 ;
@@ -66500,7 +53548,7 @@ Please note that this version of SCGid constitutes an early-release version that
     sc:url "https://github.com/compbel/SCIFIL" .
 
 <https://bio.tools/SCIMAP> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_3810,
         edam:topic_3855 ;
@@ -66513,7 +53561,7 @@ Please note that this version of SCGid constitutes an early-release version that
     sc:url "http://www.scimap.org.uk/" .
 
 <https://bio.tools/SCMVTDb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0634,
         edam:topic_0780,
@@ -66529,7 +53577,7 @@ Please note that this version of SCGid constitutes an early-release version that
     sc:url "http://webtom.cabgrid.res.in/scmvtdb/" .
 
 <https://bio.tools/SCMarker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3170,
         edam:topic_3308,
@@ -66547,28 +53595,8 @@ SCMarker performs cell-type-specific marker selection from single cell RNA seque
     sc:name "SCMarker" ;
     sc:url "https://github.com/KChen-lab/SCMarker" .
 
-<https://bio.tools/SCN1A> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0199,
-        edam:topic_0625,
-        edam:topic_3068,
-        edam:topic_3304,
-        edam:topic_3334 ;
-    sc:citation <https://doi.org/10.1093/BIB/BBZ115>,
-        "pubmed:31686106" ;
-    sc:description """individualizing for genes with molecular sub-regional stratification.
-
-This database collects SCN1A mutations identified in patients with epilepsies and other neurological diseases, based mostly on reviewing published literature. We welcome information on SCN1A mutations from other sources.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'Optimization silico tools predicting genetic variants'""" ;
-    sc:featureList edam:operation_0331,
-        edam:operation_3196,
-        edam:operation_3225,
-        edam:operation_3461 ;
-    sc:name "SCN1A" ;
-    sc:url "http://www.caae.org.cn/gzneurosci/scn1adatabase/index.php" .
-
 <https://bio.tools/SCNBase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0621,
         edam:topic_0780,
@@ -66587,7 +53615,7 @@ All supporting analyses required for SCNBase data""" ;
     sc:url "http://SCNBase.org" .
 
 <https://bio.tools/SCOC_database> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0219,
         edam:topic_3068,
         edam:topic_3387,
@@ -66602,7 +53630,7 @@ All supporting analyses required for SCNBase data""" ;
     sc:url "http://data.eol.ucar.edu/" .
 
 <https://bio.tools/SCOPA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0820,
@@ -66625,28 +53653,8 @@ All supporting analyses required for SCNBase data""" ;
     biotools:primaryContact "Andrew P Morris",
         "Reedik Magi" .
 
-<https://bio.tools/SCOPE_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0625,
-        edam:topic_3382 ;
-    sc:citation <https://doi.org/10.1016/J.YDBIO.2019.11.014>,
-        "pubmed:31877274" ;
-    sc:description """A new method to quantify 3D biological structures and identify differences in zebrafish forebrain development.
-
-Research in the life sciences has traditionally relied on the analysis of clear morphological phenotypes, which are often revealed using increasingly powerful microscopy techniques analyzed as maximum intensity projections (MIPs). However, as biology turns towards the analysis of more subtle phenotypes, MIPs and qualitative approaches are failing to adequately describe these phenotypes. To address these limitations and quantitatively analyze the three-dimensional (3D) spatial relationships of biological structures, we developed the computational method and program called ΔSCOPE (Changes in Spatial Cylindrical Coordinate Orientation using PCA Examination).
-
-||| HOMEPAGE MISSING!.
-
-||| NAME EQUAL TO (PUB. DIFFERENT) bio.tools/scope.
-
-||| NAME (SCOPE) SIMILAR TO (PUB. DIFFERENT) bio.tools/scope-scrna (SCope), bio.tools/scopeplusplus (SCOPE++)""" ;
-    sc:featureList edam:operation_3435,
-        edam:operation_3799,
-        edam:operation_3891 ;
-    sc:name "SCOPE_autogenerated" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31877274" .
-
 <https://bio.tools/SCOPIT> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3308 ;
@@ -66663,7 +53671,7 @@ Research in the life sciences has traditionally relied on the analysis of clear
     sc:url "https://alexdavisscs.shinyapps.io/scs_power_multinomial/" .
 
 <https://bio.tools/SCOT> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0736,
         edam:topic_3542 ;
@@ -66679,7 +53687,7 @@ Research in the life sciences has traditionally relied on the analysis of clear
     sc:url "https://this-group.rocks/" .
 
 <https://bio.tools/SCRABBLE> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3170,
@@ -66702,7 +53710,7 @@ Research in the life sciences has traditionally relied on the analysis of clear
     biotools:primaryContact "Tao Peng" .
 
 <https://bio.tools/SCRIBE> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3170,
         edam:topic_3518 ;
@@ -66716,7 +53724,7 @@ Please run Rscript --vanilla fitSCRIBE.R [expression file] [batch index file] [b
     sc:url "https://github.com/YiliangTracyZhang/SCRIBE" .
 
 <https://bio.tools/SCRIBER> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0128,
         edam:topic_2275 ;
@@ -66731,7 +53739,7 @@ Please run Rscript --vanilla fitSCRIBE.R [expression file] [batch index file] [b
     sc:url "http://biomine.cs.vcu.edu/servers/SCRIBER/" .
 
 <https://bio.tools/SCSsim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0632,
         edam:topic_2885,
         edam:topic_3168 ;
@@ -66745,7 +53753,7 @@ Please run Rscript --vanilla fitSCRIBE.R [expression file] [batch index file] [b
     sc:url "https://github.com/qasimyu/scssim" .
 
 <https://bio.tools/SCTree> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3170 ;
     sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTZ425>,
@@ -66764,7 +53772,7 @@ Please run Rscript --vanilla fitSCRIBE.R [expression file] [batch index file] [b
         "Lin Wan" .
 
 <https://bio.tools/SCeNGEA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3067,
         edam:topic_3304,
         edam:topic_3308 ;
@@ -66776,7 +53784,7 @@ Please run Rscript --vanilla fitSCRIBE.R [expression file] [batch index file] [b
     sc:url "https://cengen.shinyapps.io/SCeNGEA" .
 
 <https://bio.tools/SCryPTA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0153,
         edam:topic_2828,
         edam:topic_3318 ;
@@ -66790,33 +53798,8 @@ To access SCryPTA, click here . The instructions to use SCryPTA can be found her
     sc:name "SCryPTA" ;
     sc:url "http://www.if.usp.br/scrypta" .
 
-<https://bio.tools/SDA_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0080,
-        edam:topic_0121,
-        edam:topic_2269,
-        edam:topic_3172,
-        edam:topic_3520 ;
-    sc:citation <https://doi.org/10.1186/S12859-019-3067-Z>,
-        "pmcid:PMC6798423",
-        "pubmed:31623550" ;
-    sc:description """a semi-parametric differential abundance analysis method for metabolomics and proteomics data.
-
-Differential Abundant Analysis for Metabolomics and Proteomics Data.
-
-This Package utilizes a Semi-parametric Differential Abundance analysis (SDA) method for metabolomics and proteomics data from mass spectrometry. SDA is able to robustly handle non-normally distributed data and provides a clear quantification of the effect size.
-
-||| NAME EQUAL TO (PUB. DIFFERENT) bio.tools/sda-simulate.
-
-||| COMMON LINK WITH (PUB. & NAME DIFFERENT) bio.tools/sdams (BIOCONDUCTOR.ORG/packages/release/bioc/html/SDAMS.html)""" ;
-    sc:featureList edam:operation_3435,
-        edam:operation_3659,
-        edam:operation_3799 ;
-    sc:license "GPL-3.0" ;
-    sc:name "SDA_autogenerated" ;
-    sc:url "https://www.bioconductor.org/packages/release/bioc/html/SDAMS.html" .
-
 <https://bio.tools/SDE> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3068,
@@ -66834,7 +53817,7 @@ This Package utilizes a Semi-parametric Differential Abundance analysis (SDA) me
     biotools:primaryContact "Rowan Iskandar" .
 
 <https://bio.tools/SDEAP> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2640,
@@ -66853,7 +53836,7 @@ This Package utilizes a Semi-parametric Differential Abundance analysis (SDA) me
         "Tao Jian" .
 
 <https://bio.tools/SDG> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
         edam:topic_3489 ;
@@ -66868,7 +53851,7 @@ This Package utilizes a Semi-parametric Differential Abundance analysis (SDA) me
     sc:url "https://github.com/bioinfologics/sdg" .
 
 <https://bio.tools/SDM6A> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3295,
         edam:topic_3315,
         edam:topic_3474 ;
@@ -66882,7 +53865,7 @@ This Package utilizes a Semi-parametric Differential Abundance analysis (SDA) me
     sc:url "http://thegleelab.org/SDM6A" .
 
 <https://bio.tools/SDR> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3068 ;
     sc:citation <https://doi.org/10.7287/PEERJ.PREPRINTS.2227V2> ;
@@ -66894,7 +53877,7 @@ This work involves a tool implementation for evaluating Sediment Delivery Ratio
     sc:url "https://github.com/pierluigiderosa/r.sdr" .
 
 <https://bio.tools/SDRS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0634,
         edam:topic_3305,
@@ -66911,7 +53894,7 @@ This work involves a tool implementation for evaluating Sediment Delivery Ratio
     sc:url "http://www.fieldepi.org/SDRS" .
 
 <https://bio.tools/SE-DMTG> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0749 ;
     sc:citation <https://doi.org/10.1186/S12864-019-5956-Y>,
@@ -66924,7 +53907,7 @@ This work involves a tool implementation for evaluating Sediment Delivery Ratio
     sc:url "https://github.com/RongquanWang/SE-DMTG" .
 
 <https://bio.tools/SEAMIS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3489,
         edam:topic_3678 ;
@@ -66939,7 +53922,7 @@ This work involves a tool implementation for evaluating Sediment Delivery Ratio
     sc:url "https://github.com/Alerovere/SEAMIS" .
 
 <https://bio.tools/SEAweb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0659,
         edam:topic_3170,
@@ -66961,7 +53944,7 @@ SEA (also SEAweb) is a searchable database for the expression of small RNA (miRN
     sc:url "http://sea.ims.bio/" .
 
 <https://bio.tools/SECAPR> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0769,
         edam:topic_3168,
@@ -66994,7 +53977,7 @@ Sorry, this file is invalid so it cannot be displayed""" ;
     sc:url "http://www.github.com/AntonelliLab/seqcap_processor" .
 
 <https://bio.tools/SECLAF> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application",
         "Web service" ;
@@ -67015,7 +53998,7 @@ Sorry, this file is invalid so it cannot be displayed""" ;
         "Vince Grolmusz" .
 
 <https://bio.tools/SECNVs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_2885,
         edam:topic_3315,
@@ -67038,7 +54021,7 @@ SECNVs (Simulator of Exome Copy Number Variants) is a fast, robust and customiza
     sc:url "https://github.com/YJulyXing/SECNVs" .
 
 <https://bio.tools/SED> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0209,
         edam:topic_3474 ;
@@ -67050,30 +54033,8 @@ SECNVs (Simulator of Exome Copy Number Variants) is a fast, robust and customiza
     sc:name "SED" ;
     sc:url "https://zhanglab.ccmb.med.umich.edu/SED/" .
 
-<https://bio.tools/SEECancer> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0659,
-        edam:topic_0749,
-        edam:topic_2640,
-        edam:topic_3360,
-        edam:topic_3512 ;
-    sc:citation <https://doi.org/10.3390/IJMS20205190>,
-        "pmcid:PMC6834124",
-        "pubmed:31635135" ;
-    sc:description """Functional Prediction of Candidate MicroRNAs for CRC Management Using in Silico Approach.
-
-Click evolutionary stage to quick search early late relapse metastasis drug resistant drug induced.
-
-Cancer is driven by accumulating somatic alterations which confer normal cells fitness advantage to evolve from a premalignant status to malignant tumor. The SEECancer database presents the comprehensive cancer evolutionary stage-specific somatic events (including early-specific, late-specific, relapse-specific, metastasis-specific, drug-resistant and drug-induced genomic events) and their temporal orders.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'GeneMANIA' (bio.tools/genemania), 'Trident', 'Mfold' (bio.tools/mfold), 'Cytoscape' (bio.tools/cytoscape)""" ;
-    sc:featureList edam:operation_0463,
-        edam:operation_3439,
-        edam:operation_3463 ;
-    sc:name "SEECancer" ;
-    sc:url "http://biocc.hrbmu.edu.cn/SEECancer/index.jsp" .
-
 <https://bio.tools/SEGAN> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3382,
         edam:topic_3474,
@@ -67085,7 +54046,7 @@ Cancer is driven by accumulating somatic alterations which confer normal cells f
     sc:url "https://github.com/vivitsai/SEGAN" .
 
 <https://bio.tools/SELVa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0199 ;
@@ -67101,7 +54062,7 @@ Cancer is driven by accumulating somatic alterations which confer normal cells f
     sc:url "https://github.com/bazykinlab/SELVa" .
 
 <https://bio.tools/SEMA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0611,
         edam:topic_2640,
@@ -67122,7 +54083,7 @@ Cancer is driven by accumulating somatic alterations which confer normal cells f
     biotools:primaryContact "Kakajan Komurov" .
 
 <https://bio.tools/SEMpl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_2885,
         edam:topic_3169 ;
@@ -67137,22 +54098,13 @@ Cancer is driven by accumulating somatic alterations which confer normal cells f
 
 <https://bio.tools/SEPAS> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1755" ;
-            sc:name "Protein atom" ;
-            sc:sameAs "http://edamontology.org/data_1755" ],
-        [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1755" ;
-            sc:name "Protein atom" ;
-            sc:sameAs "http://edamontology.org/data_1755" ] ;
+            sc:additionalType "http://edamontology.org/data_1755" ;
+            sc:encodingFormat "http://edamontology.org/format_1475" ;
+            sc:name "Protein atom" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2526" ;
-            sc:name "Text data" ;
-            sc:sameAs "http://edamontology.org/data_2526" ],
-        [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2526" ;
-            sc:name "Text data" ;
-            sc:sameAs "http://edamontology.org/data_2526" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2526" ;
+            sc:name "Text data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0128,
@@ -67170,7 +54122,7 @@ Cancer is driven by accumulating somatic alterations which confer normal cells f
     sc:url "http://biophysics.ir/affinity" .
 
 <https://bio.tools/SEPATH> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0637,
         edam:topic_0769,
         edam:topic_2640,
@@ -67198,7 +54150,7 @@ SEPATH is a software designed to obtain accurate taxonomic classifications from
     sc:url "https://github.com/UEA-Cancer-Genetics-Lab/sepath_tool_UEA" .
 
 <https://bio.tools/SEQdata-BEACON> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0780,
         edam:topic_2269,
         edam:topic_3168,
@@ -67214,7 +54166,7 @@ SEPATH is a software designed to obtain accurate taxonomic classifications from
     sc:url "http://seqbeacon.genomics.cn/" .
 
 <https://bio.tools/SEQing> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0780,
         edam:topic_3170,
@@ -67233,7 +54185,7 @@ The file requirements.txt can be used to install all needed needed dependencies
     sc:url "https://github.com/malewins/SEQing" .
 
 <https://bio.tools/SEQprocess> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3170,
@@ -67257,7 +54209,7 @@ The file requirements.txt can be used to install all needed needed dependencies
     sc:url "https://github.com/omicsCore/SEQprocess" .
 
 <https://bio.tools/SEQualyzer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0099,
@@ -67276,17 +54228,8 @@ The file requirements.txt can be used to install all needed needed dependencies
     sc:url "http://bme.ucdavis.edu/aviranlab/SEQualyzer" ;
     biotools:primaryContact "Sharon Aviran" .
 
-<https://bio.tools/SERENE-IoT_project> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3063,
-        edam:topic_3376 ;
-    sc:citation <https://doi.org/10.3233/SHTI190336>,
-        "pubmed:31438037" ;
-    sc:description "> MEDIUM CONFIDENCE! | > HOMEPAGE MISSING! | > CORRECT NAME OF TOOL COULD ALSO BE 'SERENE-IoT', 'innovation', 'ibjective', 'medico-economic' | How the Maturation Cycle Allows the Correct Development Process of Innovative Technologies in the Healthcare Domain | This article illustrates the maturation process of innovative technologies in the healthcare domain. The role and the involvement of the stakeholders are explained, as well their interaction in the ecosystem. We focus on how the synergy between partners improves efficiency, boosts product development and accelerates market access. The spiral of the innovation concept is introduced to illustrate the different stages ensuring the correct development of a medical technology. This iterative cycle drives the product maturation, according to medical needs and feedback, and ensures the correct implementation of the innovation in the clinical framework" ;
-    sc:name "SERENE-IoT project" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31438037" .
-
 <https://bio.tools/SEVA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0654,
         edam:topic_0798,
@@ -67304,7 +54247,7 @@ The file requirements.txt can be used to install all needed needed dependencies
     sc:url "http://seva-plasmids.com/" .
 
 <https://bio.tools/SF-Matching> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3047,
         edam:topic_3172,
@@ -67321,7 +54264,7 @@ The file requirements.txt can be used to install all needed needed dependencies
     sc:url "http://www.bork.embl.de/Docu/sf_matching" .
 
 <https://bio.tools/SFLA_IWSSr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3474,
         edam:topic_3518 ;
@@ -67336,7 +54279,7 @@ The file requirements.txt can be used to install all needed needed dependencies
     sc:url "https://github.com/jimy2020/SFLA_IWSSr-Feature-Selection" .
 
 <https://bio.tools/SGID> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0605,
         edam:topic_3173,
         edam:topic_3308 ;
@@ -67349,7 +54292,7 @@ The file requirements.txt can be used to install all needed needed dependencies
     sc:url "http://sgid.popgenetics.net" .
 
 <https://bio.tools/SGL-SVM> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3168,
         edam:topic_3303,
@@ -67364,7 +54307,7 @@ At present, with the in-depth study of gene expression data, the significant rol
     sc:url "https://github.com/QUST-AIBBDRC/SGL-SVM/" .
 
 <https://bio.tools/SHYBRID> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0632,
         edam:topic_0749,
         edam:topic_3304 ;
@@ -67378,7 +54321,7 @@ At present, with the in-depth study of gene expression data, the significant rol
     sc:url "https://github.com/jwouters91/shybrid" .
 
 <https://bio.tools/SIAN> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3375 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/bty1069> ;
@@ -67393,35 +54336,8 @@ At present, with the in-depth study of gene expression data, the significant rol
     sc:url "https://github.com/pogudingleb/SIAN" ;
     biotools:primaryContact "Gleb Pogudin" .
 
-<https://bio.tools/SIBIA> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3306,
-        edam:topic_3384,
-        edam:topic_3444 ;
-    sc:citation <https://doi.org/10.1016/J.CMA.2018.12.008>,
-        "pmcid:PMC6922029",
-        "pubmed:31857736" ;
-    sc:description """Coupling brain-tumor biophysical models and diffeomorphic image registration.
-
-We present SIBIA (Scalable Integrated Biophysics-based Image Analysis), a framework for joint image registration and biophysical inversion and we apply it to analyze MR images of glioblastomas (primary brain tumors). We have two applications in mind. The first one is normal-to-abnormal image registration in the presence of tumor-induced topology differences. The second one is biophysical inversion based on single-time patient data. The underlying optimization problem is highly non-linear and non-convex and has not been solved before with a gradient-based approach. Given the segmentation of a normal brain MRI and the segmentation of a cancer patient MRI, we determine tumor growth parameters and a registration map so that if we "grow a tumor" (using our tumor model) in the normal brain and then register it to the patient image, then the registration mismatch is as small as possible.
-
-||| HOMEPAGE MISSING!""" ;
-    sc:featureList edam:operation_2426,
-        edam:operation_3435,
-        edam:operation_3443 ;
-    sc:name "SIBIA" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31857736" .
-
-<https://bio.tools/SIGICAM> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3376 ;
-    sc:citation <https://doi.org/10.3233/SHTI190338>,
-        "pubmed:31438039" ;
-    sc:description "> MEDIUM CONFIDENCE! | > HOMEPAGE MISSING! | > CORRECT NAME OF TOOL COULD ALSO BE 'patient-bed', 'technological', 'Atacama' | A New Software to Improve the Patient Care Supported by a Constraint-Based Model | Health facilities are care centers that receive patients with different requirements. The management of patients falls to the clinical staff trained for this activity. However, given the demands of the population, the task of managing beds is sometimes too complicated when carried out manually. In this work, we propose the design and implementation of a technological platform that provides an improved optimization approach. It manages the patient-bed allocation efficiently, by considering hospital resources given the number of units and patient diagnosis. This tool was deployed in hospitals of the Atacama regional health service in Chile, boosting the work of the clinical staff of the health facility" ;
-    sc:featureList edam:operation_3760 ;
-    sc:name "SIGICAM" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31438039" .
-
 <https://bio.tools/SIIM> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3063,
         edam:topic_3303,
         edam:topic_3384,
@@ -67436,7 +54352,7 @@ SIIM provides an unparalleled opportunity to not only hear from the best, bright
     sc:url "https://siim.org/general/" .
 
 <https://bio.tools/SIMLIN> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
         edam:topic_0601,
@@ -67455,7 +54371,7 @@ SIMLIN: an improved bioinformatics approach based on multi-stage ensemble learni
     sc:url "http://simlin.erc.monash.edu/" .
 
 <https://bio.tools/SINBAD> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_2640,
@@ -67476,7 +54392,7 @@ SIMLIN: an improved bioinformatics approach based on multi-stage ensemble learni
     biotools:primaryContact "Sean West" .
 
 <https://bio.tools/SINE_scan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0780,
@@ -67492,8 +54408,33 @@ SIMLIN: an improved bioinformatics approach based on multi-stage ensemble learni
     sc:url "https://github.com/maohlzj/SINE_Scan" ;
     biotools:primaryContact "Hao Wang" .
 
+<https://bio.tools/SINGLe> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:encodingFormat "http://edamontology.org/format_2546" ;
+            sc:name "Nucleic acid sequence" ] ;
+    bsc:output [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_0860" ;
+            sc:name "Sequence signature data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_3168,
+        edam:topic_3895,
+        edam:topic_3912 ;
+    sc:description "Accurate consensus sequence from nanopore reads of a DNA gene library. SINGLe corrects for systematic errors in nanopore sequencing reads of gene libraries and it retrieves true consensus sequences of variants identified by a barcode, needing only a few reads per variant." ;
+    sc:featureList edam:operation_2403,
+        edam:operation_3219 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "SINGLe" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://bioconductor.org/packages/release/bioc/manuals/single/man/single.pdf> ;
+    sc:url "https://github.com/rocioespci/single" .
+
 <https://bio.tools/SIRM> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0593,
         edam:topic_0602,
         edam:topic_3172,
@@ -67508,7 +54449,7 @@ SIMLIN: an improved bioinformatics approach based on multi-stage ensemble learni
     sc:url "https://pypi.org/project/moiety-modeling/" .
 
 <https://bio.tools/SISTR> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_2830,
         edam:topic_3305,
@@ -67524,7 +54465,7 @@ SIMLIN: an improved bioinformatics approach based on multi-stage ensemble learni
     sc:url "https://lfz.corefacility.ca/sistr-app/" .
 
 <https://bio.tools/SJARACNe> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -67544,7 +54485,8 @@ SIMLIN: an improved bioinformatics approach based on multi-stage ensemble learni
     biotools:primaryContact "Yu Lab in the Department of Computational Biology at St. Jude Children's Research Hospital" .
 
 <https://bio.tools/SKCM> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_2640,
         edam:topic_2830,
@@ -67553,17 +54495,16 @@ SIMLIN: an improved bioinformatics approach based on multi-stage ensemble learni
     sc:citation <https://doi.org/10.1101/850677> ;
     sc:description """Computing Skin Cutaneous Melanoma Outcome from the HLA-alleles and Clinical Characteristics.
 
-Skin Cutaneous Melanoma High-Risk Prediction(SKCMhrp) webserver can be used to distinguish high risk SKCM patients from low risk SKCM patients from their HLA-superallele and clinical characterstics. The risk estimation is based on statistical and survival analysis on recent SKCM datasets. See general section for more information.
-
-Data download coming soon !!!!!!!!!!!!!!!!!!""" ;
+Skin Cutaneous Melanoma High-Risk Prediction(SKCMhrp) webserver can be used to distinguish high risk SKCM patients from low risk SKCM patients from their HLA-superallele and clinical characteristics. The risk estimation is based on statistical and survival analysis on recent SKCM datasets. See general section for more information.""" ;
     sc:featureList edam:operation_0252,
         edam:operation_3503,
         edam:operation_3659 ;
-    sc:name "SKCM" ;
+    sc:name "SKCMhrp" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/skcmhrp/data.php> ;
     sc:url "https://webs.iiitd.edu.in/raghava/skcmhrp/" .
 
 <https://bio.tools/SKIMMR> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0218,
         edam:topic_0634,
@@ -67582,23 +54523,8 @@ SKIMMR - a research prototype for machine-aided skim reading (includes back-end
     sc:name "SKIMMR" ;
     sc:url "https://github.com/vitnov/SKIMMR" .
 
-<https://bio.tools/SKIPHOS> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0121,
-        edam:topic_0154,
-        edam:topic_0601,
-        edam:topic_2229 ;
-    sc:citation <https://doi.org/10.1101/793794> ;
-    sc:description """non-kinase specific phosphorylation site prediction with random forests and amino acid skip-gram embeddings.
-
-Abstract Motivation Phosphorylation, which is catalyzed by kinase proteins, is in the top two most common and widely studied types of known essential post-translation protein modification (PTM). Phosphorylation is known to regulate most cellular processes such as protein synthesis, cell division, signal transduction, cell growth, development and aging. Various phosphorylation site prediction models have been developed, which can be broadly categorized as being kinase-specific or non-kinase specific (general). Unlike the latter, the former requires a large enough number of experimentally known phosphorylation sites annotated with a given kinase for training the model, which is not the case in reality: less than 3% of the phosphorylation sites known to date have been annotated with a responsible kinase""" ;
-    sc:featureList edam:operation_0267,
-        edam:operation_0417,
-        edam:operation_3904 ;
-    sc:name "SKIPHOS" ;
-    sc:url "http://fit.uet.vnu.edu.vn/SKIPHOS" .
-
 <https://bio.tools/SLAM-DUNK> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_2885,
@@ -67622,7 +54548,7 @@ Abstract Motivation Phosphorylation, which is catalyzed by kinase proteins, is i
         "Philipp Rescheneder" .
 
 <https://bio.tools/SLAST> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3168 ;
     sc:citation <https://doi.org/10.1101/840546> ;
@@ -67633,21 +54559,8 @@ Abstract Motivation Phosphorylation, which is catalyzed by kinase proteins, is i
     sc:name "SLAST" ;
     sc:url "https://www.dnaservic.es/dnaresult?ob=2&min=0.5&id=5191&qid=BdZIQbHRnfIsdH0O&tkt=&code=" .
 
-<https://bio.tools/SLDF_REML_L_FOMC_REML> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3315,
-        edam:topic_3337,
-        edam:topic_3517 ;
-    sc:citation <https://doi.org/10.1186/S12859-019-2978-Z>,
-        "pmcid:PMC6668092",
-        "pubmed:31362713" ;
-    sc:description "> MEDIUM CONFIDENCE! | > CORRECT NAME OF TOOL COULD ALSO BE 'SLDF_REML Lanczos', 'SLDF_REML', 'interpreted-language', 'CONCLUSIONS:Both SLDF_REML L_FOMC_REML' | Stochastic Lanczos estimation of genomic variance components for linear mixed-effects models | Stochastic Lanczos REML algorithms for genomic variance component estimation | Stochastic Lanczos REML algorithms | Code accompanying Stochastic Lanczos estimation of genomic variance components for linear mixed-effects models | L_Seed constructs bases for Krylov subspaces: B, (A+σI)B, (A+σI)²B, .." ;
-    sc:featureList edam:operation_3192,
-        edam:operation_3196 ;
-    sc:name "SLDF_REML L_FOMC_REML" ;
-    sc:url "https://github.com/rborder/SL_REML" .
-
 <https://bio.tools/SLE> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0203,
         edam:topic_0634,
@@ -67663,7 +54576,7 @@ Abstract Motivation Phosphorylation, which is catalyzed by kinase proteins, is i
     sc:url "https://github.com/rabbitpei/SLE" .
 
 <https://bio.tools/SLIDE> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
@@ -67683,7 +54596,7 @@ Abstract Motivation Phosphorylation, which is catalyzed by kinase proteins, is i
     biotools:primaryContact "Hyungwon Choi" .
 
 <https://bio.tools/SLIM> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_0769,
@@ -67705,26 +54618,8 @@ Abstract Motivation Phosphorylation, which is catalyzed by kinase proteins, is i
     sc:url "https://trtcrd.github.io/SLIM/" ;
     biotools:primaryContact "Yoann Dufresne" .
 
-<https://bio.tools/SLNPM-SC_SLNPM-PC> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0659 ;
-    sc:citation <https://doi.org/10.1186/S12864-019-6284-Y>,
-        "pmcid:PMC6923828",
-        "pubmed:31856716" ;
-    sc:description """LncRNA-miRNA interaction prediction through sequence-derived linear neighborhood propagation method with information combination.
-
-BACKGROUND:Researchers discover lncRNAs can act as decoys or sponges to regulate the behavior of miRNAs. Identification of lncRNA-miRNA interactions helps to understand the functions of lncRNAs, especially their roles in complicated diseases. Computational methods can save time and reduce cost in identifying lncRNA-miRNA interactions, but there have been only a few computational methods. RESULTS:In this paper, we propose a sequence-derived linear neighborhood propagation method (SLNPM) to predict lncRNA-miRNA interactions. First, we calculate the integrated lncRNA-lncRNA similarity and the integrated miRNA-miRNA similarity by combining known lncRNA-miRNA interactions, lncRNA sequences and miRNA sequences.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'SLNPM-SC', 'SLNPM-PC'""" ;
-    sc:featureList edam:operation_0463,
-        edam:operation_3439,
-        edam:operation_3792 ;
-    sc:name "SLNPM-SC SLNPM-PC" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31856716" .
-
 <https://bio.tools/SLR-superscaffolder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3168 ;
     sc:citation <https://doi.org/10.1101/762385> ;
@@ -67735,31 +54630,8 @@ BACKGROUND:Researchers discover lncRNAs can act as decoys or sponges to regulate
     sc:name "SLR-superscaffolder" ;
     sc:url "https://github.com/BGI-Qingdao/SLR-superscaffolder" .
 
-<https://bio.tools/SLR_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0102,
-        edam:topic_0196,
-        edam:topic_3125 ;
-    sc:citation <https://doi.org/10.1186/S12859-019-3114-9>,
-        "pmcid:PMC6820941",
-        "pubmed:31666010" ;
-    sc:description """a scaffolding algorithm based on long reads and contig classification.
-
-Scaffolding using long reads obtained by the third generation sequencing technologies.
-
-SLR is a scaffolding tool based on long reads and contig classification.
-
-Step 6: SLR-unique-ambiguous -c <contigs.fa> -r <aligning.bam> -d <align-self.bam> -u <unique-contig-set.fa> -s <temp-scaffold-set.fa> -b <unique-contig.bam> -p <output_directory>.
-
-||| NAME EQUAL TO (PUB. DIFFERENT) bio.tools/slr""" ;
-    sc:featureList edam:operation_0525,
-        edam:operation_3198,
-        edam:operation_3216 ;
-    sc:license "GPL-3.0" ;
-    sc:name "SLR_autogenerated" ;
-    sc:url "https://github.com/luojunwei/SLR" .
-
 <https://bio.tools/SLTChemDB> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_2258,
@@ -67782,7 +54654,7 @@ Step 6: SLR-unique-ambiguous -c <contigs.fa> -r <aligning.bam> -d <align-self.ba
     biotools:primaryContact "Harpreet Singh" .
 
 <https://bio.tools/SLiM_software> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0199,
@@ -67794,7 +54666,7 @@ Step 6: SLR-unique-ambiguous -c <contigs.fa> -r <aligning.bam> -d <align-self.ba
         <https://doi.org/10.1111/1755-0998.12968> ;
     sc:description "Evolutionary simulation framework that combines a powerful engine for population genetic simulations with the capability of modeling arbitrarily complex evolutionary scenarios.  Includes a graphical modeling environment." ;
     sc:featureList edam:operation_0550,
-        edam:operation_3946 ;
+        edam:operation_3429 ;
     sc:isAccessibleForFree true ;
     sc:license "GPL-3.0" ;
     sc:name "SLiM" ;
@@ -67804,26 +54676,13 @@ Step 6: SLR-unique-ambiguous -c <contigs.fa> -r <aligning.bam> -d <align-self.ba
     sc:softwareHelp <http://benhaller.com/slim/Eidos_Manual.pdf>,
         <http://benhaller.com/slim/SLiMEidosRefSheets.zip>,
         <http://benhaller.com/slim/SLiM_Manual.pdf> ;
-    sc:softwareVersion "3.7.1" ;
+    sc:softwareVersion "4.0.1" ;
     sc:url "https://messerlab.org/slim/" ;
     biotools:primaryContact <https://orcid.org/0000-0001-8453-9377>,
         <https://orcid.org/0000-0003-1874-8327> .
 
-<https://bio.tools/SLiMs> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0781,
-        edam:topic_2830,
-        edam:topic_3510 ;
-    sc:citation <https://doi.org/10.1016/J.TIBTECH.2019.07.004>,
-        "pubmed:31427097" ;
-    sc:description "> VERY_LOW CONFIDENCE! | > COMMON LINK WITH (PUB. & NAME DIFFERENT) bio.tools/slimsuite (GITHUB.COM/slimsuite/SLiMSuite) | > CORRECT NAME OF TOOL COULD ALSO BE 'biosecurity', 'mimicry', 'viral', 'immunogens' | Resources to Discover and Use Short Linear Motifs in Viral Proteins | Open source short linear motif discovery and sequence analysis | This repository contains the core code for the SLiMSuite package of short linear motif (SLiM) discovery and sequence analysis tools from the Edwards Lab | More information can be found at the SLiMSuite Blog and in the docs/ folder. Release information, including updates since the last release, can be found in docs/release/" ;
-    sc:featureList edam:operation_0238,
-        edam:operation_0239,
-        edam:operation_0245 ;
-    sc:name "SLiMs" ;
-    sc:url "https://github.com/slimsuite/SLiMSuite" .
-
 <https://bio.tools/SM2RAIN> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:citation <https://doi.org/10.7287/PEERJ.PREPRINTS.2131V4> ;
     sc:description "Using Python® language for the validation of the CCI soil moisture products via SM2RAIN." ;
     sc:featureList edam:operation_2428 ;
@@ -67831,7 +54690,7 @@ Step 6: SLR-unique-ambiguous -c <contigs.fa> -r <aligning.bam> -d <align-self.ba
     sc:url "http://hydrology.irpi.cnr.it/research/sm2rain/" .
 
 <https://bio.tools/SMAGEXP> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3308,
@@ -67853,25 +54712,8 @@ Step 6: SLR-unique-ambiguous -c <contigs.fa> -r <aligning.bam> -d <align-self.ba
     sc:url "https://github.com/sblanck/smagexp" ;
     biotools:primaryContact "Samuel Blanck" .
 
-<https://bio.tools/SMARTS_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0218,
-        edam:topic_3305,
-        edam:topic_3474 ;
-    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTZ800>,
-        "pubmed:31647520" ;
-    sc:description """the social media-based addiction recovery and intervention targeting server.
-
-MOTIVATION:Substance abuse and addiction is a significant contemporary health crisis. Modeling its epidemiology and designing effective interventions requires real-time data analysis along with the means to contextualize addiction patterns across the individual-to-community scale. In this context, social media platforms have begun to receive significant attention as a novel source of real-time user-reported information. However, the ability of epidemiologists to use such information is significantly stymied by the lack of publicly available algorithms and software for addiction information extraction, analysis and modeling. RESULTS:SMARTS is a public, open source, web-based application that addresses the aforementioned deficiency.
-
-||| HOMEPAGE MISSING!.
-
-||| NAME EQUAL TO (PUB. DIFFERENT) bio.tools/smarts""" ;
-    sc:featureList edam:operation_0337 ;
-    sc:name "SMARTS_autogenerated" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31647520" .
-
 <https://bio.tools/SMART_App> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0654,
         edam:topic_2640,
@@ -67888,33 +54730,14 @@ BACKGROUND:Data mining of The Cancer Genome Atlas (TCGA) data has significantly
     sc:name "SMART App" ;
     sc:url "http://www.bioinfo-zs.com/smartapp" .
 
-<https://bio.tools/SMART_IRB_Platform> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0108,
-        edam:topic_0605,
-        edam:topic_3379 ;
-    sc:citation <https://doi.org/10.1017/CTS.2019.394>,
-        "pmcid:PMC6798516",
-        "pubmed:31660237" ;
-    sc:description """A national resource for IRB review for multisite studies.
-
-The SMART IRB Master Reliance Agreement and reciprocal IRB reliance model enable single IRB review in accordance with NIH policies on the Use of a Single Institutional Review Board for Multisite Research.
-
-Review the Master Common Reciprocal Institutional Review Board Authorization Agreement.
-
-To learn more about differences across versions of the SMART IRB Agreement read the Agreement Version Guide.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'SMART IRB'""" ;
-    sc:name "SMART IRB Platform" ;
-    sc:url "https://smartirb.org/resources/" .
-
 <https://bio.tools/SMARTdenovo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "Ultra-fast de novo assembler using long noisy reads" ;
     sc:name "SMARTdenovo" ;
     sc:url "https://github.com/ruanjue/smartdenovo" .
 
 <https://bio.tools/SMARTp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3315,
         edam:topic_3399,
         edam:topic_3421 ;
@@ -67926,7 +54749,7 @@ To learn more about differences across versions of the SMART IRB Agreement read
     sc:url "https://github.com/bandyopd/SMARTp" .
 
 <https://bio.tools/SMIRNOFF99Frosst> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2275,
         edam:topic_3047,
@@ -67942,7 +54765,7 @@ To learn more about differences across versions of the SMART IRB Agreement read
     sc:url "https://github.com/openforcefield/smirnoff99Frosst" .
 
 <https://bio.tools/SMOG-mapping> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_3070 ;
     sc:citation <https://doi.org/10.3233/SHTI190814>,
@@ -67951,17 +54774,8 @@ To learn more about differences across versions of the SMART IRB Agreement read
     sc:name "SMOG" ;
     sc:url "https://github.com/Onto-Med/SMOG" .
 
-<https://bio.tools/SMOG_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0089,
-        edam:topic_3070 ;
-    sc:citation <https://doi.org/10.3233/SHTI190814>,
-        "pubmed:31483262" ;
-    sc:description "> HOMEPAGE MISSING! | > NAME EQUAL TO (PUB. DIFFERENT) bio.tools/smog | A Lightweight Tool for Object-Spreadsheet Mapping | In the life science domain, experts are usually familiar with spreadsheet software and often use it in their daily work to collect and structure required domain knowledge. The processing and analysis of spreadsheet data is an important task that must be supported by efficient software solutions. A typical application scenario is for example an integration of spreadsheet data (specified or derived) in an ontology to provide reasoning or search. Different converter tools were developed to support a spreadsheet-to-ontology transformation. Such tools allow often only a relatively simple structure of the spreadsheet template or they require complex mapping processes to map the spreadsheet and ontological entities" ;
-    sc:name "SMOG_autogenerated" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31483262" .
-
 <https://bio.tools/SMSNet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
         edam:topic_0154,
@@ -67996,7 +54810,7 @@ SMSNet's predicted amino acid sequences for a public HLA peptidome dataset (Mass
     sc:url "https://figshare.com/articles/SMSNet_s_trained_models/8259122" .
 
 <https://bio.tools/SMT-Genetic> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0202,
         edam:topic_3304,
@@ -68014,7 +54828,7 @@ SMSNet's predicted amino acid sequences for a public HLA peptidome dataset (Mass
     biotools:primaryContact "Dewan Sarwar" .
 
 <https://bio.tools/SMUT> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2885,
@@ -68036,7 +54850,7 @@ SMSNet's predicted amino acid sequences for a public HLA peptidome dataset (Mass
     biotools:primaryContact "Wujuan Zhong" .
 
 <https://bio.tools/SMoLR> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3382 ;
     sc:citation <https://doi.org/10.1186/s12859-018-2578-3>,
@@ -68054,30 +54868,8 @@ SMSNet's predicted amino acid sequences for a public HLA peptidome dataset (Mass
     sc:url "https://github.com/maartenpaul/SMoLR" ;
     biotools:primaryContact "Maarten Paul" .
 
-<https://bio.tools/SNAP-Ed> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0102,
-        edam:topic_0610,
-        edam:topic_3318,
-        edam:topic_3390,
-        edam:topic_3810 ;
-    sc:citation <https://doi.org/10.1093/TBM/IBZ115>,
-        "pmcid:PMC6768857",
-        "pubmed:31570929" ;
-    sc:description """demonstrating the impact of a national framework for obesity prevention in low-income populations.
-
-SNAP-Ed Evaluation Framework – SNAP-Ed Toolkit.
-
-* SNAP-Ed Priority Outcome Indicator.
-
-Welcome to the new SNAP-Ed Toolkit website! This toolkit will help SNAP-Ed Implementing Agencies across the country find evidence-based interventions and explore the SNAP-Ed Evaluation Framework in order to strengthen our impact on our goal to help SNAP-eligible households make healthy eating and physical activity choices on a limited budget.
-
-In 2019, 52 new interventions were added to the SNAP-Ed Toolkit!""" ;
-    sc:featureList edam:operation_2421 ;
-    sc:name "SNAP-Ed" ;
-    sc:url "https://snapedtoolkit.org/framework/index/" .
-
 <https://bio.tools/SNAPPy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3293,
         edam:topic_3305 ;
@@ -68091,43 +54883,8 @@ In 2019, 52 new interventions were added to the SNAP-Ed Toolkit!""" ;
     sc:softwareHelp <https://snappy-hiv1-subtyping.readthedocs.io/> ;
     sc:url "https://github.com/PMMAraujo/snappy" .
 
-<https://bio.tools/SNAPS> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0102,
-        edam:topic_0593,
-        edam:topic_3318,
-        edam:topic_3474 ;
-    sc:citation <https://doi.org/10.3390/S19224935>,
-        "pmcid:PMC6891700",
-        "pubmed:31766116" ;
-    sc:description """Sensor Analytics Point Solutions for Detection and Decision Support Systems.
-
-In this review, we discuss the role of sensor analytics point solutions (SNAPS), a reduced complexity machine-assisted decision support tool. We summarize the approaches used for mobile phone-based chemical biological sensors, including general hardware and software requirements for signal transduction and acquisition. We introduce SNAPS, part of a platform approach to converge sensor data and analytics. The platform is designed to consist of a portfolio of modular tools which may lend itself to dynamic composability by enabling context-specific selection of relevant units, resulting in case-based working modules. SNAPS is an element of this platform where data analytics, statistical characterization and algorithms may be delivered to the data either via embedded systems in devices, or sourced, in near real-time, from mist, fog or cloud computing resources.
-
-||| HOMEPAGE MISSING!""" ;
-    sc:featureList edam:operation_2429,
-        edam:operation_3629,
-        edam:operation_3799 ;
-    sc:name "SNAPS" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31766116" .
-
-<https://bio.tools/SNF> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0749 ;
-    sc:citation <https://doi.org/10.7287/PEERJ.PREPRINTS.2477V2>,
-        <https://doi.org/10.7287/PEERJ.PREPRINTS.2477V3> ;
-    sc:description """Synthesizing high performance NFV service chains.
-
-In this paper we introduce SNF, a framework that synthesizes (S) network function (NF) service chains by eliminating redundant I O and repeated elements, while consolidating stateful cross layer packet operations across the chain. SNF uses graph composition and set theory to determine traffic classes handled by a service chain composed of multiple elements. It then synthesizes each traffic class using a minimal set of new elements that apply single-read-single-write and early-discard operations. Our SNF prototype takes a baseline state-of-the-art network functions virtualization (NFV) framework to the level of performance required for practical NFV service deployments. Software-based SNF realizes long (up to 10 NFs) and stateful service chains that achieve line-rate 40 Gbps throughput (up to 8.5x greater than the baseline NFV framework).
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'NFV'""" ;
-    sc:featureList edam:operation_2495,
-        edam:operation_3762 ;
-    sc:name "SNF" ;
-    sc:url "https://doi.org/10.7287/PEERJ.PREPRINTS.2477V3" .
-
 <https://bio.tools/SNOMED_CT> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0089,
@@ -68145,42 +54902,8 @@ In this paper we introduce SNF, a framework that synthesizes (S) network functio
     sc:softwareHelp <http://www.snomed.org/snomed-ct/five-step-briefing> ;
     sc:url "http://www.snomed.org/snomed-ct/five-step-briefing" .
 
-<https://bio.tools/SNP-CRISPR_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0749,
-        edam:topic_2885,
-        edam:topic_3168,
-        edam:topic_3512,
-        edam:topic_3912 ;
-    sc:citation <https://doi.org/10.1534/G3.119.400904>,
-        "pubmed:31822517" ;
-    sc:description """A Web Tool for SNP-Specific Genome Editing.
-
-SNP-targeted CRISPR design pipeline.
-
-CRISPR/Cas9 target online predictor.
-
-DRSC tool for designing SNP-targetted CRISPR guides.
-
-Are you interested in targeting SNP or INDEL variants in your experiment? Look no further! We can help you find CRISPR guide designs (both -NGG and -NAG) in Fly, Human, Mouse, Zebrafish, and Rat genomes. Each guide will be given an efficiency and off-target score based on our algorithms so that you can plan accordingly. Targeting multiple variants within the same guide is also available (select the checkbox)!.
-
-Online version available at: https://www.flyrnai.org/tools/snp_crispr.
-
-DRSC tool for search and view of pre-computed CRISPR designs for genome engineering (knock-out or knock-in) in Drosophila.
-
-DRSC/TRiP Functional Genomics Resources.
-
-— Rational design of CRISPR/Cas target.
-
-Enter an accession number (e.g""" ;
-    sc:featureList edam:operation_2421,
-        edam:operation_3096,
-        edam:operation_3227 ;
-    sc:license "MIT" ;
-    sc:name "SNP-CRISPR_autogenerated" ;
-    sc:url "https://www.flyrnai.org/tools/snp_crispr/" .
-
 <https://bio.tools/SNP2APA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_2885,
         edam:topic_3517 ;
@@ -68193,7 +54916,7 @@ Enter an accession number (e.g""" ;
     sc:url "http://gong_lab.hzau.edu.cn/SNP2APA/" .
 
 <https://bio.tools/SNP2SIM> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0176,
@@ -68213,7 +54936,7 @@ Enter an accession number (e.g""" ;
     biotools:primaryContact "Matthew McCoy" .
 
 <https://bio.tools/SNPector> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0208,
         edam:topic_0625,
@@ -68227,25 +54950,8 @@ Enter an accession number (e.g""" ;
     sc:name "SNPector" ;
     sc:url "https://github.com/peterhabib/SNPector" .
 
-<https://bio.tools/SNPector_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0102,
-        edam:topic_0203,
-        edam:topic_0625,
-        edam:topic_0634,
-        edam:topic_2885 ;
-    sc:citation <https://doi.org/10.12688/F1000RESEARCH.21556.1> ;
-    sc:description """SNP inspection tool for diagnosing gene pathogenicity and drug response in a naked sequence.
-
-According to uncovering of genetic roots of many disease, the need of tool to investigate the DNA of patient to find out what kinds of varients are located in and how it could controbute in the disease. SNPector is a python software combine between different other software could detect variants in given sequence and illustrate to which diseas those variants are contribute""" ;
-    sc:featureList edam:operation_0337,
-        edam:operation_0484,
-        edam:operation_3661 ;
-    sc:license "MIT" ;
-    sc:name "SNPector_autogenerated" ;
-    sc:url "https://github.com/peterhabib/SNPector" .
-
 <https://bio.tools/SNPnotes> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_2885,
         edam:topic_3173,
@@ -68267,7 +54973,7 @@ To download and prepare annotation files""" ;
     sc:url "https://github.com/shraddhapai/SNPNotes" .
 
 <https://bio.tools/SNPs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2885,
         edam:topic_3518 ;
@@ -68279,20 +54985,8 @@ To download and prepare annotation files""" ;
     sc:name "SNPs" ;
     sc:url "http://snp-seek.irri.org/" .
 
-<https://bio.tools/SNPs_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0634,
-        edam:topic_2885,
-        edam:topic_3518 ;
-    sc:citation <https://doi.org/10.1101/762518> ;
-    sc:description "> VERY_LOW CONFIDENCE! | > CORRECT NAME OF TOOL COULD ALSO BE 'Tay-Sachs', 'TSD', 'Tay-Saches', 'HEXA' | Thirty two novel nsSNPs May effect on HEXA protein Leading to Tay-Sachs disease (TSD) Using a Computational Approach | Predicting Human Disease-related Mutations in Proteins with Functional Annotations | SNPs &GO is a server for the prediction of single point protein mutations likely to be involved in the insurgence of diseases in humans" ;
-    sc:featureList edam:operation_0331,
-        edam:operation_0484,
-        edam:operation_3661 ;
-    sc:name "SNPs_autogenerated" ;
-    sc:url "https://snps-and-go.biocomp.unibo.it/snps-and-go/" .
-
 <https://bio.tools/SNiPloid> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0102,
         edam:topic_0194,
@@ -68311,23 +55005,8 @@ SNiPloid assumes that short reads datasets (i.e. samples) derived from distinct
     sc:name "SNiPlay" ;
     sc:url "http://sniplay.southgreen.fr/" .
 
-<https://bio.tools/SOCCOMAS> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0089,
-        edam:topic_3067,
-        edam:topic_3489 ;
-    sc:citation <https://doi.org/10.1093/DATABASE/BAZ067>,
-        "pmcid:PMC6686081",
-        "pubmed:31392324" ;
-    sc:description "a FAIR web content management system that uses knowledge graphs and that is based on semantic programming | Source code ontology for SOCCOMAS | SOCCOMAS: A FAIR Web Content Management System based on Semantic Programming using the Semantic Programming Ontology | SOCCOMAS (Semantic Ontology-Controlled application for web COntent MAngement Systems) is a semantic web content management system (S-WCMS) that utilizes the Semantic Programming Ontology (SPrO; https: github.com SemanticProgramming SPrO) and a Java Interpreter (https: github.com SemanticProgramming Interpreter) as well as an Interface (https: github.com SemanticProgramming Interface)" ;
-    sc:featureList edam:operation_2422,
-        edam:operation_3096,
-        edam:operation_3501 ;
-    sc:license "LGPL-3.0" ;
-    sc:name "SOCCOMAS" ;
-    sc:url "https://github.com/SemanticProgramming/SOCCOMAS" .
-
 <https://bio.tools/SOLQC> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0632,
         edam:topic_3068,
         edam:topic_3168,
@@ -68344,7 +55023,7 @@ SOLQC is a novel analysis tool, which enables fast and comprehensive analysis of
     sc:url "https://app.gitbook.com/@yoav-orlev/s/solqc/" .
 
 <https://bio.tools/SOLart> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0130,
         edam:topic_3474 ;
     sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTZ773>,
@@ -68356,7 +55035,7 @@ SOLQC is a novel analysis tool, which enables fast and comprehensive analysis of
     sc:url "http://babylone.ulb.ac.be/SOLART/" .
 
 <https://bio.tools/SOM> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btu849> ;
     sc:description "Python library implementing the full self-organizing map (SOM) analysis workflow." ;
@@ -68374,26 +55053,8 @@ SOLQC is a novel analysis tool, which enables fast and comprehensive analysis of
     biotools:primaryContact "Guillaume Bouvier",
         "Michael Nilges" .
 
-<https://bio.tools/SOMANZ> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3411,
-        edam:topic_3419,
-        edam:topic_3421 ;
-    sc:citation <https://doi.org/10.1111/AJO.13084>,
-        "pubmed:31657004" ;
-    sc:description """SOMANZ position paper on the management of nausea and vomiting in pregnancy and hyperemesis gravidarum.
-
-APPROVAL OF WRITTEN GUIDELINES BY SOMANZ.
-
-There are two proposed methods of guideline development processes as detailed below:-.
-
-In 2017 SOMANZ published a multi-disciplinary guideline for the management of sepsis in pregnancy and the post-partum period. We took the broadest definition of sepsis, including the investigation of viral and non-infectious sepsis. We have included three short easy diagnostic criteria for the triage of the acute patient: Respiratory rate, Systolic Blood Pressure and Alert/non-alert which trigger a management pathway.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'auditable'""" ;
-    sc:name "SOMANZ" ;
-    sc:url "https://www.somanz.org/guidelines.asp" .
-
 <https://bio.tools/SONATA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3304,
@@ -68413,18 +55074,8 @@ In 2017 SOMANZ published a multi-disciplinary guideline for the management of se
     sc:url "https://github.com/AllenInstitute/sonata" ;
     biotools:primaryContact "Anton Arkhipov" .
 
-<https://bio.tools/SOPP> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0605,
-        edam:topic_3390,
-        edam:topic_3393 ;
-    sc:citation <https://doi.org/10.1016/J.JAND.2019.05.013>,
-        "pubmed:31446936" ;
-    sc:description "> LOW CONFIDENCE! | > CORRECT NAME OF TOOL COULD ALSO BE 'Academy Nutrition', 'RDNs CNM', 'RDNs', 'CNM' | Revised 2019 Standards of Professional Performance for Registered Dietitian Nutritionists (Competent, Proficient, and Expert) in Clinical Nutrition Management | The Standards of Practice (SOP) and Standards of Professional Performance (SOPP) can be used by credentialed nutrition and dietetics practitioners to assess their individual performance needs" ;
-    sc:name "SOPP" ;
-    sc:url "http://eatrightpro.org/SOP" .
-
 <https://bio.tools/SORA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3316,
         edam:topic_3673 ;
@@ -68445,7 +55096,7 @@ Please go to the Wiki pages, https://github.com/BioHPC/SORA/wiki, to learn about
     sc:url "https://github.com/BioHPC/SORA" .
 
 <https://bio.tools/SPAG> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0625,
         edam:topic_2885,
@@ -68460,7 +55111,7 @@ Please go to the Wiki pages, https://github.com/BioHPC/SORA/wiki, to learn about
     sc:url "https://github.com/estellerochat/SPAG" .
 
 <https://bio.tools/SPARK-MSNA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_3170,
@@ -68482,7 +55133,7 @@ Please go to the Wiki pages, https://github.com/BioHPC/SORA/wiki, to learn about
     biotools:primaryContact <https://orcid.org/0000-0001-6445-7833> .
 
 <https://bio.tools/SPARQL> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0091,
         edam:topic_0621 ;
@@ -68495,7 +55146,7 @@ Please go to the Wiki pages, https://github.com/BioHPC/SORA/wiki, to learn about
     sc:url "https://sparql.orthodb.org/sparql" .
 
 <https://bio.tools/SPARSim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_2229,
         edam:topic_3170,
@@ -68510,7 +55161,7 @@ Please go to the Wiki pages, https://github.com/BioHPC/SORA/wiki, to learn about
     sc:url "https://sysbiobig.dei.unipd.it/software/sparsim/" .
 
 <https://bio.tools/SPAligner> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
         edam:topic_3174 ;
@@ -68524,14 +55175,13 @@ Please go to the Wiki pages, https://github.com/BioHPC/SORA/wiki, to learn about
 
 <https://bio.tools/SPCI> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2851" ;
-            sc:name "Drug structure" ;
-            sc:sameAs "http://edamontology.org/data_2851" ] ;
+            sc:additionalType "http://edamontology.org/data_2851" ;
+            sc:encodingFormat "http://edamontology.org/format_3814" ;
+            sc:name "Drug structure" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1696" ;
-            sc:name "Drug report" ;
-            sc:sameAs "http://edamontology.org/data_1696" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1696" ;
+            sc:name "Drug report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3314 ;
@@ -68549,7 +55199,7 @@ Please go to the Wiki pages, https://github.com/BioHPC/SORA/wiki, to learn about
     biotools:primaryContact <https://orcid.org/0000-0001-5088-8149> .
 
 <https://bio.tools/SPDI> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
@@ -68566,7 +55216,7 @@ Please go to the Wiki pages, https://github.com/BioHPC/SORA/wiki, to learn about
     sc:url "https://api.ncbi.nlm.nih.gov/variation/v0/" .
 
 <https://bio.tools/SPDRank> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0209,
         edam:topic_3070,
         edam:topic_3373 ;
@@ -68579,7 +55229,7 @@ Please go to the Wiki pages, https://github.com/BioHPC/SORA/wiki, to learn about
     sc:url "https://github.com/akiyamalab/SPDRank" .
 
 <https://bio.tools/SPECTRUM> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0601,
         edam:topic_3520 ;
@@ -68595,7 +55245,7 @@ Please go to the Wiki pages, https://github.com/BioHPC/SORA/wiki, to learn about
     sc:url "https://github.com/BIRL/SPECTRUM/" .
 
 <https://bio.tools/SPHARM-PDM> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_0769,
@@ -68614,7 +55264,7 @@ Please go to the Wiki pages, https://github.com/BioHPC/SORA/wiki, to learn about
     sc:url "https://www.nitrc.org/projects/spharm-pdm/" .
 
 <https://bio.tools/SPIEC-EASI> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_2269,
         edam:topic_3174,
@@ -68628,7 +55278,7 @@ Please go to the Wiki pages, https://github.com/BioHPC/SORA/wiki, to learn about
     sc:url "https://github.com/zdk123/SpiecEasi" .
 
 <https://bio.tools/SPINE> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0632,
         edam:topic_0736,
@@ -68649,7 +55299,7 @@ Protein domain insertion via programmed oligo libraries""" ;
     sc:url "https://github.com/schmidt-lab/SPINE" .
 
 <https://bio.tools/SPLATCHE3> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0199,
@@ -68670,20 +55320,8 @@ Protein domain insertion via programmed oligo libraries""" ;
     sc:url "http://www.splatche.com/splatche3" ;
     biotools:primaryContact "Mathias Currat" .
 
-<https://bio.tools/SPLBoost> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3361 ;
-    sc:citation <https://doi.org/10.1109/TCYB.2019.2957101>,
-        "pubmed:31880577" ;
-    sc:description """An Improved Robust Boosting Algorithm Based on Self-Paced Learning.
-
-It is known that boosting can be interpreted as an optimization technique to minimize an underlying loss function. Specifically, the underlying loss being minimized by the traditional AdaBoost is the exponential loss, which proves to be very sensitive to random noise outliers. Therefore, several boosting algorithms, e.g., LogitBoost and SavageBoost, have been proposed to improve the robustness of AdaBoost by replacing the exponential loss with some designed robust loss functions. In this article, we present a new way to robustify AdaBoost, that is, incorporating the robust learning idea of self-paced learning (SPL) into the boosting framework. Specifically, we design a new robust boosting algorithm based on the SPL regime, that is, SPLBoost, which can be easily implemented by slightly modifying off-the-shelf boosting packages.
-
-||| HOMEPAGE MISSING!""" ;
-    sc:name "SPLBoost" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31880577" .
-
 <https://bio.tools/SPM> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3384,
         edam:topic_3444 ;
@@ -68700,38 +55338,15 @@ It is known that boosting can be interpreted as an optimization technique to min
     sc:softwareHelp <https://www.fil.ion.ucl.ac.uk/spm/doc/manual.pdf> ;
     sc:url "https://www.fil.ion.ucl.ac.uk/spm/" .
 
-<https://bio.tools/SPM_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0199,
-        edam:topic_0602,
-        edam:topic_2640,
-        edam:topic_3315 ;
-    sc:citation <https://doi.org/10.1371/JOURNAL.PCBI.1007451>,
-        "pmcid:PMC6872169",
-        "pubmed:31710622" ;
-    sc:description """Uncovering the subtype-specific temporal order of cancer pathway dysregulation.
-
-Subtype-specific Pathway Linear Progression Model.
-
-An integer linear program for simultaneous identification of cancer pathways, cancer subtyes and subtype-specific order of pathway dysregulation. The input is the Cancer Cell Fraction (CCF) matrix with rows corresponding to samples and columns indicating somatic genetic variants for which CCF values are measured. The output consists of a partitioning samples into subtypes, a partitioning of variants into pathways, and a linear progression model of the pathways for each subtype.
-
-Our software SPM consists of three separate parts: intermediate file generation (matGenerator.cpp), the main algorithm implementation (SPM.
-
-||| NAME EQUAL TO (PUB. DIFFERENT) bio.tools/SPM""" ;
-    sc:featureList edam:operation_2426,
-        edam:operation_3439 ;
-    sc:name "SPM_autogenerated" ;
-    sc:url "https://github.com/Dalton386/SPM" .
-
 <https://bio.tools/SPOT-RNA> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3495" ;
-            sc:name "RNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3495" ] ;
+            sc:additionalType "http://edamontology.org/data_3495" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "RNA sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0880" ;
-            sc:name "RNA secondary structure" ;
-            sc:sameAs "http://edamontology.org/data_0880" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0880" ;
+            sc:name "RNA secondary structure" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0097 ;
     sc:citation <https://doi.org/10.1038/s41467-019-13395-9>,
@@ -68747,7 +55362,7 @@ Our software SPM consists of three separate parts: intermediate file generation
     biotools:primaryContact <https://orcid.org/0000-0002-0478-5533> .
 
 <https://bio.tools/SPROF> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0123,
         edam:topic_0130,
@@ -68768,7 +55383,7 @@ Protein sequence profile prediction aims to generate multiple sequences from str
     sc:url "https://github.com/biomed-AI/SPROF" .
 
 <https://bio.tools/SPROUTS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:citation <https://doi.org/10.1515/bams-2014-0015> ;
     sc:description """SPROUTS has two general functions.
 The first is to provide existing mutation data given a protein specified by a PDB ID. This is Query mode.
@@ -68778,7 +55393,7 @@ The second is to generate new mutation data based on a new PDB ID or a user inpu
     sc:url "http://sprouts.rpbs.univ-paris-diderot.fr/" .
 
 <https://bio.tools/SPUTNIK> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3382,
         edam:topic_3520 ;
@@ -68797,7 +55412,7 @@ The second is to generate new mutation data based on a new PDB ID or a user inpu
     biotools:primaryContact "Paolo Inglese" .
 
 <https://bio.tools/SPar-K> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3068,
@@ -68819,7 +55434,7 @@ The second is to generate new mutation data based on a new PDB ID or a user inpu
         "Romain Groux" .
 
 <https://bio.tools/SParQ> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_2229,
         edam:topic_3382 ;
@@ -68833,7 +55448,7 @@ The second is to generate new mutation data based on a new PDB ID or a user inpu
     sc:url "https://github.com/sparq-plugin/sparq" .
 
 <https://bio.tools/SPeDE> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3174,
         edam:topic_3520,
         edam:topic_3697 ;
@@ -68848,20 +55463,8 @@ The second is to generate new mutation data based on a new PDB ID or a user inpu
     sc:name "SPeDE" ;
     sc:url "https://github.com/LM-UGent/SPeDE" .
 
-<https://bio.tools/SRA01_04> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0203,
-        edam:topic_0634,
-        edam:topic_3518 ;
-    sc:citation <https://doi.org/10.1016/J.EXER.2019.107787>,
-        "pubmed:31479653" ;
-    sc:description "> LOW CONFIDENCE! | > HOMEPAGE MISSING! | > CORRECT NAME OF TOOL COULD ALSO BE 'SRA01', 'LEC SRA01', 'LEC SRA01 04', 'LEC' | Molecular characterization of the human lens epithelium-derived cell line SRA01/04 | Cataract-associated gene discovery in human and animal models have informed on key aspects of human lens development, homeostasis and pathology. Additionally, in vitro models such as the culture of permanent human lens epithelium-derived cell lines (LECs) have also been utilized to understand the molecular biology of lens cells. However, these resources remain uncharacterized, specifically regarding their global gene expression and suitability to model lens cell biology. Therefore, we sought to molecularly characterize gene expression in the human LEC, SRA01 04, which is commonly used in lens studies. We first performed short tandem repeat (STR) analysis and validated SRA01 04 LEC for its human origin, as recommended by the eye research community" ;
-    sc:featureList edam:operation_2495,
-        edam:operation_3223 ;
-    sc:name "SRA01 04" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31479653" .
-
 <https://bio.tools/SRH> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0194,
         edam:topic_3293 ;
     sc:citation <https://doi.org/10.1093/GBE/EVZ193>,
@@ -68873,50 +55476,8 @@ The second is to generate new mutation data based on a new PDB ID or a user inpu
     sc:name "SRH" ;
     sc:url "https://github.com/roblanf/SRHtests" .
 
-<https://bio.tools/SRHR> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3411,
-        edam:topic_3418,
-        edam:topic_3420,
-        edam:topic_3422,
-        edam:topic_3575 ;
-    sc:citation <https://doi.org/10.1016/J.JADOHEALTH.2019.09.014>,
-        "pubmed:31761003" ;
-    sc:description """A Package of Sexual and Reproductive Health and Rights Interventions-What Does It Mean for Adolescents?.
-
-This article analyzes the relevance of the comprehensive definition of sexual and reproductive health and rights (SRHR) to adolescents and identifies adolescent-specific implications for the implementation of an essential package of SRHR interventions. The delivery of a comprehensive approach to SRHR targeting adolescents is underpinned by five principles-equity, quality, accountability, multisectorality, and meaningful engagement. All SRHR interventions included in the package are relevant to adolescents, given the diversity of adolescents' SRHR needs and considering their specific attributes, circumstances, and experiences.
-
-||| HOMEPAGE MISSING!""" ;
-    sc:name "SRHR" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31761003" .
-
-<https://bio.tools/SRMs> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0121,
-        edam:topic_0593,
-        edam:topic_3172,
-        edam:topic_3390,
-        edam:topic_3520 ;
-    sc:citation <https://doi.org/10.3390/METABO9110270>,
-        "pmcid:PMC6918257",
-        "pubmed:31703392" ;
-    sc:description """Metabolomics Test Materials for Quality Control.
-
-NIST supports accurate and compatible measurements by certifying and providing over 1200 Standard Reference Materials.
-
-Updated NIST Lockbox Address Effective 10/10/2018.
-
-Browse SRMs by Technical Category.
-
-Search for Materials - Find an SRM/RM.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'Metabolomics Test Materials Quality Control', 'urine', 'ILS'""" ;
-    sc:featureList edam:operation_2428,
-        edam:operation_3435,
-        edam:operation_3891 ;
-    sc:name "SRMs" ;
-    sc:url "http://www.nist.gov/srm" .
-
 <https://bio.tools/SSASU> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3382 ;
     sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTZ674>,
         "pubmed:31504202" ;
@@ -68924,16 +55485,8 @@ Search for Materials - Find an SRM/RM.
     sc:name "SSASU" ;
     sc:url "https://github.com/brossetti/ssasu" .
 
-<https://bio.tools/SSCOR> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0749 ;
-    sc:citation <https://doi.org/10.1109/TNSRE.2019.2941349>,
-        "pubmed:31536009" ;
-    sc:description "> LOW CONFIDENCE! | > HOMEPAGE MISSING! | Designing a Sum of Squared Correlations Framework for Enhancing SSVEP-Based BCIs | This study illustrates and evaluates a novel subject-specific target detection framework, sum of squared correlations (SSCOR), for improving the performance of steady-state visual evoked potential (SSVEP) based brain-computer interfaces (BCIs). The SSCOR spatial filter learns a common SSVEP representation space through the optimization of the individual SSVEP templates. The projection onto this SSVEP response subspace improves the signal to noise ratio (SNR) of the SSVEP components embedded in the recorded electroencephalographic (EEG) data. To demonstrate the effectiveness of the proposed framework, the target detection performance of the SSCOR method is compared with the state of the art task-related component analysis (TRCA). The evaluation is conducted on a 40 target SSVEP benchmark data collected from 35 subjects" ;
-    sc:name "SSCOR" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31536009" .
-
 <https://bio.tools/SSEThread> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0611,
         edam:topic_2828,
         edam:topic_3306 ;
@@ -68950,7 +55503,7 @@ X-ray crystallography and electron microscopy maps resolved to 3-8 Å are genera
     sc:url "https://github.com/salilab/SSEThread" .
 
 <https://bio.tools/SSIPe> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0128,
         edam:topic_0154,
@@ -68975,7 +55528,7 @@ Estimation of binding affinity change upon mutations at protein-protein interfac
     sc:url "https://zhanglab.ccmb.med.umich.edu/SSIPe" .
 
 <https://bio.tools/SSNpipe> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0821,
         edam:topic_3293 ;
@@ -68988,7 +55541,7 @@ Estimation of binding affinity change upon mutations at protein-protein interfac
     sc:url "https://github.com/ahvdk/SSNpipe" .
 
 <https://bio.tools/SSRSC> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3168,
         edam:topic_3318,
         edam:topic_3382 ;
@@ -69003,10 +55556,10 @@ Estimation of binding affinity change upon mutations at protein-protein interfac
 
 <https://bio.tools/SSnet> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Protein features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_2275,
         edam:topic_3336,
@@ -69026,7 +55579,7 @@ https://github.com/ekraka/SSnet""" ;
     biotools:primaryContact <https://orcid.org/0000-0003-4762-944X> .
 
 <https://bio.tools/ST-SIM> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3361,
         edam:topic_3489 ;
     sc:citation <https://doi.org/10.1109/TOH.2019.2962446>,
@@ -69040,7 +55593,7 @@ Recent standardization efforts for Tactile Internet (TI) and haptic codecs have
     sc:url "https://www.raniahassen.com/Research/" .
 
 <https://bio.tools/ST-Total-Variation-MRI> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3304,
@@ -69057,7 +55610,7 @@ Recent standardization efforts for Tactile Internet (TI) and haptic codecs have
     biotools:primaryContact "Juan Felipe Pérez Juste Abascal" .
 
 <https://bio.tools/STAFF> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3382,
         edam:topic_3398 ;
@@ -69074,7 +55627,7 @@ Changes in blood flow velocity and distribution are vital in maintaining tissue
     sc:url "https://github.com/icbm-iupui/STAFF" .
 
 <https://bio.tools/START-R> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0605,
         edam:topic_0654,
@@ -69093,30 +55646,8 @@ We use Docker to develop and manage START-R. We invite you to verify that the fo
     sc:name "START-R" ;
     sc:url "https://github.com/thomasdenecker/START-R" .
 
-<https://bio.tools/STATegra_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0080,
-        edam:topic_0121,
-        edam:topic_3170,
-        edam:topic_3172,
-        edam:topic_3308 ;
-    sc:citation <https://doi.org/10.1038/S41597-019-0202-7>,
-        "pmcid:PMC6823427",
-        "pubmed:31672995" ;
-    sc:description """comprehensive multi-omics dataset of B-cell differentiation in mouse.
-
-STATegra is a FP7 funded project that aims to develop.
-
-The STATegra project aims to develop new statistical methods and tools for the integrative analysis of diverse omics data for a more efficient use of the genomics technologies. Furthermore we aim to make them readily available to the research community through rapid and efficient implementation as user-friendly software packages. Among the data-types we consider: mRNA-seq, [...] .
-
-||| NAME (STATegra) SIMILAR TO (PUB. DIFFERENT) bio.tools/stategra (STATegRa)""" ;
-    sc:featureList edam:operation_2476,
-        edam:operation_2495,
-        edam:operation_3891 ;
-    sc:name "STATegra_autogenerated" ;
-    sc:url "http://www.stategra.eu/" .
-
 <https://bio.tools/STEM> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3305,
         edam:topic_3324,
         edam:topic_3395 ;
@@ -69128,70 +55659,8 @@ The STATegra project aims to develop new statistical methods and tools for the i
     sc:name "STEM" ;
     sc:url "http://www.eclipse.org/stem" .
 
-<https://bio.tools/STORM_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0632,
-        edam:topic_3303,
-        edam:topic_3810,
-        edam:topic_3895 ;
-    sc:citation <https://doi.org/10.1101/870055> ;
-    sc:description """Sequence-to-function deep learning frameworks for synthetic biology.
-
-While synthetic biology has revolutionized our approaches to medicine, agriculture, and energy, the design of novel circuit components beyond nature-inspired templates can prove itself challenging without well-established design rules.
-
-This repository provides code for Valeri, Collins, et al. 2019.
-
-||| NAME EQUAL TO (PUB. DIFFERENT) bio.tools/storm.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'toehold' (bio.tools/toehold), '91,534 toehold', 'sequence-to-function', 'toehold switches'""" ;
-    sc:featureList edam:operation_3095,
-        edam:operation_3695,
-        edam:operation_3891 ;
-    sc:license "GPL-3.0" ;
-    sc:name "STORM_autogenerated" ;
-    sc:url "http://www.github.com/midas-wyss/storm" .
-
-<https://bio.tools/STRAIN> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0102,
-        edam:topic_0196,
-        edam:topic_3673 ;
-    sc:citation <https://doi.org/10.1186/S12859-019-2887-1>,
-        "pmcid:PMC6873635",
-        "pubmed:31757201" ;
-    sc:description """an R package for multi-locus sequence typing from whole genome sequencing data.
-
-BACKGROUND:Multi-locus sequence typing (MLST) is a standard typing technique used to associate a sequence type (ST) to a bacterial isolate. When the output of whole genome sequencing (WGS) of a sample is available the ST can be assigned directly processing the read-set. Current approaches employ reads mapping (SRST2) against the MLST loci, k-mer distribution (stringMLST), selective assembly (GRAbB) or whole genome assembly (BIGSdb) followed by BLASTn sequence query. Here we present STRAIN (ST Reduced Assembly IdentificatioN), an R package that implements a hybrid strategy between assembly and mapping of the reads to assign the ST to an isolate starting from its read-sets. RESULTS:Analysis of 540 publicly accessible Illumina read sets showed STRAIN to be more accurate at correct allele assignment and new alleles identification compared to SRTS2, stringMLST and GRAbB""" ;
-    sc:featureList edam:operation_0523,
-        edam:operation_0525,
-        edam:operation_3227,
-        edam:operation_3840 ;
-    sc:name "STRAIN" ;
-    sc:url "https://gitlab.com/DalsaMat/STRAIN" .
-
-<https://bio.tools/STRIDE_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0199,
-        edam:topic_0632,
-        edam:topic_0749,
-        edam:topic_3295,
-        edam:topic_3382 ;
-    sc:citation <https://doi.org/10.1093/NAR/GKZ1118>,
-        "pubmed:31832687" ;
-    sc:description """fluorescence method for direct, specific in situ detection of individual single- or double-strand DNA breaks in fixed cells.
-
-We here describe a technique termed STRIDE (SensiTive Recognition of Individual DNA Ends), which enables highly sensitive, specific, direct in situ detection of single- or double-strand DNA breaks (sSTRIDE or dSTRIDE), in nuclei of single cells, using fluorescence microscopy. The sensitivity of STRIDE was tested using a specially developed CRISPR Cas9 DNA damage induction system, capable of inducing small clusters or individual single- or double-strand breaks.
-
-||| HOMEPAGE MISSING!.
-
-||| NAME EQUAL TO (PUB. DIFFERENT) bio.tools/stride.
-
-||| NAME (STRIDE) SIMILAR TO (PUB. DIFFERENT) bio.tools/stride-assembly (StriDe)""" ;
-    sc:featureList edam:operation_0371,
-        edam:operation_3185,
-        edam:operation_3202 ;
-    sc:name "STRIDE_autogenerated" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31832687" .
-
 <https://bio.tools/STRmix> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2885 ;
@@ -69211,7 +55680,7 @@ We here describe a technique termed STRIDE (SensiTive Recognition of Individual
     biotools:primaryContact "Vic Meles" .
 
 <https://bio.tools/STS-NLSP> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0154,
         edam:topic_2275,
@@ -69234,7 +55703,7 @@ model_training_*.py are codes for parameter tuning in a server""" ;
     sc:url "https://github.com/dqwei-lab/STS" .
 
 <https://bio.tools/ST_viewer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3308,
         edam:topic_3382,
@@ -69253,31 +55722,8 @@ model_training_*.py are codes for parameter tuning in a server""" ;
     sc:url "https://github.com/SpatialTranscriptomicsResearch/st_viewer" ;
     biotools:primaryContact "Jose Fernandez Navarro" .
 
-<https://bio.tools/STarFish_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0121,
-        edam:topic_0140,
-        edam:topic_0154,
-        edam:topic_0621,
-        edam:topic_3047 ;
-    sc:citation <https://doi.org/10.1021/ACS.JCIM.9B00489>,
-        "pubmed:31589422" ;
-    sc:description """A Stacked Ensemble Target Fishing Approach and its Application to Natural Products.
-
-Tool for predicting the protein targets of bioactive small molecules.
-
-STarFish is a Stacked Ensemble Target Fishing tool for small molecule target identification. STarFish takes a chemical structure as an input and provides a ranked list of potential protein targets along with a probability score for each.
-
-||| NAME (STarFish) SIMILAR TO (PUB. DIFFERENT) bio.tools/starfish (STARFISH)""" ;
-    sc:featureList edam:operation_2489,
-        edam:operation_3092,
-        edam:operation_3216,
-        edam:operation_3803 ;
-    sc:license "GPL-3.0" ;
-    sc:name "STarFish_autogenerated" ;
-    sc:url "https://github.com/ntcockroft/STarFish" .
-
 <https://bio.tools/STing> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3168,
         edam:topic_3305,
@@ -69296,23 +55742,16 @@ See the full documentation at: https://sting.readthedocs.io/""" ;
     sc:name "STing" ;
     sc:url "https://github.com/jordanlab/STing" .
 
-<https://bio.tools/SUAPRO> a sc:SoftwareApplication ;
-    sc:citation <https://doi.org/10.1016/J.SCITOTENV.2019.06.261>,
-        "pubmed:31390692" ;
-    sc:description "> LOW CONFIDENCE! | > HOMEPAGE MISSING! | > CORRECT NAME OF TOOL COULD ALSO BE 'sustainability' | Sustainability assessment procedure for operations and production processes (SUAPRO) | Sustainability assessment is a fundamental step to support decisions towards sustainable development, and several procedures to assess the sustainability of antrophic production systems have been suggested. However, most of them lack a scientific-based construct supporting their conceptual model of sustainability, which usually results in a choice of indicator(s) without criterion that can best represent a fraction of the larger and deeper concept of sustainability. This work proposes a novel framework, named Sustainability Assessment Procedure for Operations and Production Processes (SUAPRO), supported by the PDCA four-step management method (plan, do, check, and act) and the five sectors sustainability (5SEnSU) model" ;
-    sc:name "SUAPRO" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31390692" .
-
 <https://bio.tools/SURFY> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3112" ;
-            sc:name "Gene expression matrix" ;
-            sc:sameAs "http://edamontology.org/data_3112" ] ;
+            sc:additionalType "http://edamontology.org/data_3112" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Gene expression matrix" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1636" ;
-            sc:name "Heat map" ;
-            sc:sameAs "http://edamontology.org/data_1636" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1636" ;
+            sc:encodingFormat "http://edamontology.org/format_3603" ;
+            sc:name "Heat map" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0140 ;
     sc:citation <https://doi.org/10.1073/pnas.1808790115>,
@@ -69327,7 +55766,7 @@ See the full documentation at: https://sting.readthedocs.io/""" ;
     sc:url "http://wlab.ethz.ch/surfaceome/" .
 
 <https://bio.tools/SURVTOOLS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3302,
         edam:topic_3305,
@@ -69341,7 +55780,7 @@ There is a plethora of meat-borne hazards - including parasites - for which ther
     sc:url "https://survtools.org/" .
 
 <https://bio.tools/SUSPECT-BDQ> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0199,
@@ -69364,7 +55803,7 @@ There is a plethora of meat-borne hazards - including parasites - for which ther
     biotools:primaryContact "David B. Ascher" .
 
 <https://bio.tools/SVCA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2269,
         edam:topic_2640,
@@ -69385,7 +55824,7 @@ NB: If you are already a limix user, we recommend you install svca_limix and svc
     sc:url "https://github.com/damienArnol/svca" .
 
 <https://bio.tools/SVJedi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
         edam:topic_0625,
@@ -69406,7 +55845,7 @@ SVJedi is a structural variation (SV) genotyper for long read data. Based on a r
     sc:url "https://github.com/llecompte/SVJedi.git" .
 
 <https://bio.tools/SVScore> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2885,
         edam:topic_3175,
@@ -69426,7 +55865,7 @@ SVJedi is a structural variation (SV) genotyper for long read data. Based on a r
     biotools:primaryContact "Ira M. Hall" .
 
 <https://bio.tools/SVants> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0798,
         edam:topic_3175,
@@ -69447,7 +55886,7 @@ git clone https://github.com/EpiBlake/SVants.git""" ;
     sc:url "https://github.com/EpiBlake/SVants" .
 
 <https://bio.tools/SVs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0114,
         edam:topic_0196,
@@ -69467,7 +55906,7 @@ git clone https://github.com/EpiBlake/SVants.git""" ;
     sc:url "https://github.com/grocsvs/grocsvs" .
 
 <https://bio.tools/SW-Tandem> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -69484,7 +55923,7 @@ git clone https://github.com/EpiBlake/SVants.git""" ;
     sc:url "https://github.com/Logic09/SW-Tandem" .
 
 <https://bio.tools/SWAPCounter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3168,
         edam:topic_3316 ;
@@ -69500,7 +55939,7 @@ This is a distributed kmer counting tools for TB-PB sequencing dataset""" ;
     sc:url "https://github.com/mengjintao/SWAPCounter" .
 
 <https://bio.tools/SWPepNovo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3520,
         edam:topic_3673 ;
@@ -69515,7 +55954,7 @@ This is a distributed kmer counting tools for TB-PB sequencing dataset""" ;
     sc:url "https://github.com/ChuangLi99/SWPepNovo" .
 
 <https://bio.tools/SWiFi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0593,
         edam:topic_3047 ;
@@ -69537,7 +55976,7 @@ follow the instructions in the manual in order to get started""" ;
     sc:url "https://github.com/barakgilboa/SWiFi-software" .
 
 <https://bio.tools/SZN_Zoological_Collection_Database> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_3500 ;
@@ -69551,7 +55990,7 @@ follow the instructions in the manual in order to get started""" ;
     sc:url "http://szn.i.hosei.ac.jp/HTML/index.php" .
 
 <https://bio.tools/SalMotifDB> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0602,
         edam:topic_0749 ;
@@ -69566,7 +56005,7 @@ follow the instructions in the manual in order to get started""" ;
     sc:url "https://salmobase.org/apps/SalMotifDB/" .
 
 <https://bio.tools/SamPler> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0621,
         edam:topic_3407 ;
@@ -69581,7 +56020,7 @@ follow the instructions in the manual in order to get started""" ;
     sc:url "https://gitlab.bio.di.uminho.pt/merlin-sysbio/merlin-sampler" .
 
 <https://bio.tools/SanXoT> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0601,
@@ -69603,7 +56042,7 @@ follow the instructions in the manual in order to get started""" ;
         "Jesús María Vázquez Cobos" .
 
 <https://bio.tools/SavvyCNV> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0632,
@@ -69624,7 +56063,7 @@ follow the instructions in the manual in order to get started""" ;
     biotools:primaryContact "Matthew N. Wakeling" .
 
 <https://bio.tools/ScType> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_2229,
         edam:topic_3170,
@@ -69639,7 +56078,7 @@ follow the instructions in the manual in order to get started""" ;
     sc:url "http://session.asuscomm.com:8080/" .
 
 <https://bio.tools/Scallop-LR> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3308,
@@ -69659,7 +56098,7 @@ follow the instructions in the manual in order to get started""" ;
     biotools:primaryContact "Carl Kingsford" .
 
 <https://bio.tools/ScanFold> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0099,
@@ -69682,13 +56121,13 @@ Using the ScanFold web server you can identify regions of an RNA sequence which
     sc:url "https://mosslabtools.bb.iastate.edu/scanfold" .
 
 <https://bio.tools/ScanITD> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "ScanITD: detecting internal tandem duplication with robust variant allele frequency estimation" ;
     sc:name "ScanITD" ;
     sc:url "https://github.com/ylab-hi/ScanITD" .
 
 <https://bio.tools/Scavenger> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0769,
         edam:topic_3170 ;
@@ -69702,7 +56141,7 @@ Using the ScanFold web server you can identify regions of an RNA sequence which
     sc:url "https://github.com/VCCRI/Scavenger" .
 
 <https://bio.tools/Sci-Hub> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3068,
         edam:topic_3382,
         edam:topic_3489 ;
@@ -69739,7 +56178,7 @@ The first pirate website in the world to open mass and public access to tens of
     sc:url "https://github.com/greenelab/scihub" .
 
 <https://bio.tools/Sci-LMM> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_3053,
         edam:topic_3305,
@@ -69761,7 +56200,7 @@ The first pirate website in the world to open mass and public access to tens of
     biotools:primaryContact <https://orcid.org/0000-0003-1432-7461> .
 
 <https://bio.tools/SciApps> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3169,
         edam:topic_3170 ;
@@ -69776,7 +56215,7 @@ MaizeCODE is a project aimed at identifying and analyzing functional elements in
     sc:url "https://sciapps.org/" .
 
 <https://bio.tools/Scientific_Educational> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0632,
         edam:topic_3293,
         edam:topic_3297 ;
@@ -69791,7 +56230,7 @@ MaizeCODE is a project aimed at identifying and analyzing functional elements in
     sc:url "http://www.scied.com" .
 
 <https://bio.tools/ScisTree> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0625,
         edam:topic_2229 ;
@@ -69803,50 +56242,8 @@ MaizeCODE is a project aimed at identifying and analyzing functional elements in
     sc:name "ScisTree" ;
     sc:url "https://github.com/yufengwudcs/ScisTree" .
 
-<https://bio.tools/ScisTree_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0084,
-        edam:topic_0625,
-        edam:topic_2229 ;
-    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTZ676>,
-        "pubmed:31504211" ;
-    sc:description "Accurate and Efficient Cell Lineage Tree Inference from Noisy Single Cell Data | Cell tree inference and genotype calling from noisy single cell data | ScisTree is a computer program for inferring cell tree and calling genotypes from uncertain single cell genotype data. If you use ScisTree, please cite: | The key feature of ScisTree is that it works with uncertain genotypes with individualized probability. That is, you can specify for each genotype (at a row/cell or column/site) different probabilities of being a particular genotype state. ScisTree allows both binary or ternary genotypes. Here is an example for binary genotypes. Note: don't include blank rows in the input genotype file" ;
-    sc:featureList edam:operation_0547,
-        edam:operation_3196,
-        edam:operation_3557 ;
-    sc:name "ScisTree_autogenerated" ;
-    sc:url "https://github.com/yufengwudcs/ScisTree" .
-
-<https://bio.tools/Scopus> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3068,
-        edam:topic_3070,
-        edam:topic_3303,
-        edam:topic_3489 ;
-    sc:citation <https://doi.org/10.3791/58494>,
-        "pubmed:31710021" ;
-    sc:description """Comparing Bibliometric Analysis Using PubMed, Scopus, and Web of Science Databases.
-
-Elsevier’s Scopus, the largest abstract and citation database of peer-reviewed literature. Search and access research from the science, technology, medicine, social sciences and arts and humanities fields""" ;
-    sc:featureList edam:operation_2421,
-        edam:operation_3907 ;
-    sc:name "Scopus" ;
-    sc:url "http://www.scopus.com" .
-
-<https://bio.tools/SeQuiLa-cov> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3170,
-        edam:topic_3673,
-        edam:topic_3676 ;
-    sc:citation <https://doi.org/10.1093/GIGASCIENCE/GIZ094>,
-        "pmcid:PMC6680061",
-        "pubmed:31378808" ;
-    sc:description "A fast and scalable library for depth of coverage calculations | SeQuiLa User Guide — bdg-sequila 0.5.6-spark-2.4.3 documentation" ;
-    sc:featureList edam:operation_3192,
-        edam:operation_3680,
-        edam:operation_3800 ;
-    sc:name "SeQuiLa-cov" ;
-    sc:url "https://github.com/ZSI-Bio/bdg-sequila" .
-
 <https://bio.tools/SeRenDIP> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128 ;
     sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTZ428>,
@@ -69866,14 +56263,14 @@ Elsevier’s Scopus, the largest abstract and citation database of peer-reviewed
 
 <https://bio.tools/SecStrAnnotator> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ] ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1475" ;
+            sc:name "Protein structure" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1756" ;
-            sc:name "Protein residue" ;
-            sc:sameAs "http://edamontology.org/data_1756" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1756" ;
+            sc:encodingFormat "http://edamontology.org/format_2077" ;
+            sc:name "Protein residue" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API" ;
     sc:applicationSubCategory edam:topic_1317 ;
     sc:description "Annotation of secondary structure elements in proteins." ;
@@ -69885,7 +56282,7 @@ Elsevier’s Scopus, the largest abstract and citation database of peer-reviewed
     sc:url "http://webchem.ncbr.muni.cz/API/SecStr" .
 
 <https://bio.tools/Seeksv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_2640,
@@ -69905,7 +56302,7 @@ Elsevier’s Scopus, the largest abstract and citation database of peer-reviewed
     biotools:primaryContact "Bo Liao" .
 
 <https://bio.tools/Selene> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3068,
@@ -69931,14 +56328,14 @@ Elsevier’s Scopus, the largest abstract and citation database of peer-reviewed
 
 <https://bio.tools/SelfTarget> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ] ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Nucleic acid sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2084" ;
-            sc:name "Nucleic acid report" ;
-            sc:sameAs "http://edamontology.org/data_2084" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2084" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Nucleic acid report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_2269,
@@ -69958,7 +56355,7 @@ Elsevier’s Scopus, the largest abstract and citation database of peer-reviewed
     sc:url "https://github.com/felicityallen/SelfTarget" .
 
 <https://bio.tools/Selfish> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3295 ;
     sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTZ362>,
@@ -69972,7 +56369,7 @@ Elsevier’s Scopus, the largest abstract and citation database of peer-reviewed
     sc:url "https://github.com/ucrbioinfo/Selfish" .
 
 <https://bio.tools/SeneQuest> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3300,
         edam:topic_3360 ;
@@ -69983,7 +56380,7 @@ Elsevier’s Scopus, the largest abstract and citation database of peer-reviewed
     sc:url "http://Senequest.net" .
 
 <https://bio.tools/Sentieon_DNASeq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3168,
         edam:topic_3810 ;
@@ -69996,7 +56393,7 @@ Elsevier’s Scopus, the largest abstract and citation database of peer-reviewed
     sc:url "https://github.com/ncsa/Sentieon_DNASeq_Benchmarking" .
 
 <https://bio.tools/Sentinel-1> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3050,
         edam:topic_3837 ;
@@ -70011,7 +56408,7 @@ Elsevier’s Scopus, the largest abstract and citation database of peer-reviewed
     sc:url "https://github.com/So-YeonBae/Sentinel1-Biodiversity" .
 
 <https://bio.tools/Sentinel-1_SLC> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3810 ;
     sc:citation <https://doi.org/10.20944/PREPRINTS201911.0393.V1> ;
@@ -70020,26 +56417,8 @@ Elsevier’s Scopus, the largest abstract and citation database of peer-reviewed
     sc:name "Sentinel-1 SLC" ;
     sc:url "https://github.com/mrslab-iitb/sentinel-1-SLC-preprocessing-polarimetry" .
 
-<https://bio.tools/Seq2DFunc> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0080,
-        edam:topic_0099,
-        edam:topic_3168,
-        edam:topic_3398,
-        edam:topic_3474 ;
-    sc:citation <https://doi.org/10.1101/2019.12.22.886085> ;
-    sc:description """2-dimensional convolutional neural network on graph representation of synthetic sequences from massive-throughput assay.
-
-Abstract In recent years, a pipeline of massively parallel reporter assay (MPRA), and next-generation sequencing (NGS) provided large-scale datasets to investigate biological mechanisms in detail. However, bigger data often leads to larger complexity. As a result, theories derived from low-throughput experiments lose explanatory power, requiring new methods to create predictive models. Here we focus on modeling functions of nucleic acid sequences, as a study case of massive-throughput assays. We report a deep learning approach, training a two-dimensional convolutional neural network (CNN) on an ordered graph representation of nucleic acid sequences to predict their functions (Seq2DFunc). To compare the performance of Seq2DFunc with conventional methods, we obtained customized database on a CRISPR RNA processing assay.
-
-||| HOMEPAGE MISSING!""" ;
-    sc:featureList edam:operation_0331,
-        edam:operation_3095,
-        edam:operation_3196 ;
-    sc:name "Seq2DFunc" ;
-    sc:url "https://doi.org/10.1101/2019.12.22.886085" .
-
 <https://bio.tools/Seq2Feature> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0082,
@@ -70061,7 +56440,7 @@ Abstract In recent years, a pipeline of massively parallel reporter assay (MPRA)
     biotools:primaryContact "Prof. Michael Gromiha" .
 
 <https://bio.tools/SeqBreed> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2885,
         edam:topic_3517 ;
@@ -70074,7 +56453,7 @@ Abstract In recent years, a pipeline of massively parallel reporter assay (MPRA)
     sc:url "https://github.com/miguelperezenciso/SeqBreed" .
 
 <https://bio.tools/SeqDivA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0121,
         edam:topic_0160,
@@ -70091,7 +56470,7 @@ Abstract In recent years, a pipeline of massively parallel reporter assay (MPRA)
     sc:url "https://github.com/eancedeg/SeqDivA" .
 
 <https://bio.tools/SeqSero2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0622,
         edam:topic_3673 ;
@@ -70106,7 +56485,7 @@ Abstract In recent years, a pipeline of massively parallel reporter assay (MPRA)
     sc:url "http://denglab.info/SeqSero2" .
 
 <https://bio.tools/SeqTailor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application",
         "Web service" ;
@@ -70131,7 +56510,7 @@ Abstract In recent years, a pipeline of massively parallel reporter assay (MPRA)
     biotools:primaryContact <https://orcid.org/0000-0002-6129-567X> .
 
 <https://bio.tools/SeqVec> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
         edam:topic_0218,
@@ -70155,7 +56534,7 @@ Repository for the paper Modeling aspects of the language of life through transf
     sc:url "https://github.com/Rostlab/SeqVec" .
 
 <https://bio.tools/Sequence_tube_maps> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0199,
         edam:topic_3382 ;
@@ -70167,7 +56546,7 @@ Repository for the paper Modeling aspects of the language of life through transf
     sc:url "https://vgteam.github.io/sequenceTubeMap/" .
 
 <https://bio.tools/Sequencing_Initiative_Suomi_SISu> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:description "The Sequencing Initiative Suomi (SISu) search engine offers a way to search for data on sequence variants in Finns. It provides valuable summary data for researchers and clinicians as well as other people having an interest in genetics in Finland. With SISu, you can examine the attributes and appearance of different variants in Finnish cohorts and see their aggregate distribution in Finland visualized on a map." ;
@@ -70183,7 +56562,7 @@ Repository for the paper Modeling aspects of the language of life through transf
     biotools:primaryContact "Risto Kajanne" .
 
 <https://bio.tools/SeroCall> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3168,
         edam:topic_3305,
         edam:topic_3418 ;
@@ -70196,7 +56575,7 @@ Repository for the paper Modeling aspects of the language of life through transf
     sc:url "https://github.com/knightjimr/serocall" .
 
 <https://bio.tools/Serosolver> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0804,
         edam:topic_3305,
         edam:topic_3324 ;
@@ -70207,7 +56586,7 @@ Repository for the paper Modeling aspects of the language of life through transf
     sc:url "https://github.com/seroanalytics/serosolver" .
 
 <https://bio.tools/Seurat_SingleR> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3170,
         edam:topic_3308 ;
@@ -70220,7 +56599,7 @@ Repository for the paper Modeling aspects of the language of life through transf
     sc:url "https://github.com/qianhuiSenn/scRNA_cell_deconv_benchmark" .
 
 <https://bio.tools/ShNeigh> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3315 ;
     sc:citation <https://doi.org/10.1101/741447> ;
     sc:description "Chromatin 3D structure reconstruction with consideration of adjacency relationship among genomic loci | [posMatrix,retVals]=ShNeigh(heatmapMatrix,method_type)" ;
@@ -70228,7 +56607,7 @@ Repository for the paper Modeling aspects of the language of life through transf
     sc:url "https://github.com/fangzhen-li/ShNeigh" .
 
 <https://bio.tools/ShaKer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0099,
         edam:topic_3474 ;
@@ -70243,7 +56622,7 @@ Repository for the paper Modeling aspects of the language of life through transf
     sc:url "https://github.com/BackofenLab/ShaKer" .
 
 <https://bio.tools/Shambhala> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3308,
@@ -70265,18 +56644,18 @@ Repository for the paper Modeling aspects of the language of life through transf
 
 <https://bio.tools/Shark> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3494" ;
-            sc:name "DNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3494" ],
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "DNA sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3495" ;
-            sc:name "RNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3495" ] ;
+            sc:additionalType "http://edamontology.org/data_3495" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "RNA sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3495" ;
-            sc:name "RNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3495" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3495" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "RNA sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3170 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btaa779>,
@@ -70291,7 +56670,7 @@ Repository for the paper Modeling aspects of the language of life through transf
     sc:url "https://github.com/AlgoLab/shark" .
 
 <https://bio.tools/Shift-T> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0593,
         edam:topic_0632 ;
@@ -70307,7 +56686,7 @@ Repository for the paper Modeling aspects of the language of life through transf
     sc:url "http://meieringlab.uwaterloo.ca/shiftt" .
 
 <https://bio.tools/ShinyFMBN> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3297 ;
     sc:description "App developed in Shiny and usable in R environment that allows to visualize, explore, filter and extract data from FoodMicrobionet." ;
@@ -70316,7 +56695,7 @@ Repository for the paper Modeling aspects of the language of life through transf
     sc:url "https://data.mendeley.com/datasets/8fwwjpm79y/1" .
 
 <https://bio.tools/ShinyGO> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0203,
         edam:topic_0602,
@@ -70333,14 +56712,13 @@ Repository for the paper Modeling aspects of the language of life through transf
 
 <https://bio.tools/ShinyLearner> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3112" ;
-            sc:name "Gene expression matrix" ;
-            sc:sameAs "http://edamontology.org/data_3112" ] ;
+            sc:additionalType "http://edamontology.org/data_3112" ;
+            sc:encodingFormat "http://edamontology.org/format_3581" ;
+            sc:name "Gene expression matrix" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3112" ;
-            sc:name "Gene expression matrix" ;
-            sc:sameAs "http://edamontology.org/data_3112" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3112" ;
+            sc:name "Gene expression matrix" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3391,
         edam:topic_3473 ;
@@ -70358,10 +56736,9 @@ Repository for the paper Modeling aspects of the language of life through transf
 
 <https://bio.tools/ShinySOM> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3108" ;
-            sc:name "Experimental measurement" ;
-            sc:sameAs "http://edamontology.org/data_3108" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3108" ;
+            sc:name "Experimental measurement" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0804,
@@ -70383,7 +56760,7 @@ Repository for the paper Modeling aspects of the language of life through transf
     biotools:primaryContact <http://orcid.org/0000-0001-7356-4075> .
 
 <https://bio.tools/ShuTu> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0749,
         edam:topic_3382 ;
@@ -70398,7 +56775,7 @@ Repository for the paper Modeling aspects of the language of life through transf
     sc:url "http://personal.psu.edu/dzj2/ShuTu/" .
 
 <https://bio.tools/SiCloneFit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0199,
         edam:topic_0625 ;
@@ -70415,7 +56792,7 @@ Accumulation and selection of somatic mutations in a Darwinian framework result
     sc:url "https://bitbucket.org/hamimzafar/siclonefit" .
 
 <https://bio.tools/SiRJ> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_3474 ;
     sc:citation <https://doi.org/10.1037/APL0000468>,
@@ -70426,32 +56803,8 @@ Situational judgment tests (SJTs) have emerged as a staple of assessment methodo
     sc:name "SiRJ" ;
     sc:url "https://grandjam.shinyapps.io/sirj" .
 
-<https://bio.tools/Sibe> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0082,
-        edam:topic_0130,
-        edam:topic_0736 ;
-    sc:citation <https://doi.org/10.1186/S12859-019-2984-1>,
-        "pmcid:PMC6728967",
-        "pubmed:31492097" ;
-    sc:description "a computation tool to apply protein sequence statistics to predict folding and design in silico | We love Sibe and the work Sibe does. We work closely with our | Sibe is an analytical and computational framework, and it aims to provide a powerful tool for biological science, such as sequence data analysis, in silico protein folding and design. Though much of the software suite is oriented toward basic research on protein sequence analysis, folding and design, Sibe is also designed for extracting meaningful information hidden behind `big data' based on machine learning. With the help of statistical analysis methods, Sibe can infer co-evolutionary information encoded in protein amino acids sequences for protein folding and design. Now, Sibe includes seven easy-interfaced modules, several physical- & chemical-principles and statistical analysis methods, as well as different optimization solvers" ;
-    sc:featureList edam:operation_0303,
-        edam:operation_0474,
-        edam:operation_2415 ;
-    sc:name "Sibe" ;
-    sc:url "http://wyu.dgist.ac.kr/sibe" .
-
-<https://bio.tools/Sidewall_bifurcation_aneurysms_bifurcation_aneurysms> a sc:SoftwareApplication ;
-    sc:citation <https://doi.org/10.3389/FNEUR.2019.00844>,
-        "pmcid:PMC6691088",
-        "pubmed:31447764" ;
-    sc:description "> HOMEPAGE MISSING! | > CORRECT NAME OF TOOL COULD ALSO BE 'bifurcation aneurysms bifurcation aneurysms', 'Sidewall bifurcation aneurysms bifurcation', 'aneurysms bifurcation aneurysms' | Bifurcation Configuration Is an Independent Risk Factor for Aneurysm Rupture Irrespective of Location | Background: Bifurcation and sidewall aneurysms have different rupture risks, but whether this difference comes from the location of the aneurysm is not clear. The objective of this study is to illustrate the rationality of ranking bifurcation configuration as an independent risk factor for aneurysm rupture. Methods: Morphological features of 719 aneurysms (216 ruptured) were automatically extracted from a consecutive cohort of patients via PyRadiomics. Rupture risks and morphological features were compared between bifurcation and sidewall aneurysms, and lasso regression was applied to explore the morphological determinants for rupture in bifurcation and sidewall aneurysms" ;
-    sc:featureList edam:operation_3659,
-        edam:operation_3891 ;
-    sc:name "Sidewall bifurcation aneurysms bifurcation aneurysms" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31447764" .
-
 <https://bio.tools/Sierra> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2229,
         edam:topic_3170,
@@ -70467,7 +56820,7 @@ Sierra is an R package designed for detecting differential transcript usage anal
     sc:url "https://github.com/VCCRI/Sierra" .
 
 <https://bio.tools/SieveSifter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
@@ -70487,7 +56840,7 @@ Sierra is an R package designed for detecting differential transcript usage anal
     biotools:primaryContact "Andrew Fiore-Gartland" .
 
 <https://bio.tools/SigHotSpotter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0625,
@@ -70504,7 +56857,7 @@ Sierra is an R package designed for detecting differential transcript usage anal
     sc:url "https://SigHotSpotter.lcsb.uni.lu" .
 
 <https://bio.tools/SigProfilerMatrixGenerator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_3068,
@@ -70523,7 +56876,7 @@ Sierra is an R package designed for detecting differential transcript usage anal
     biotools:primaryContact "Erik Bergstrom" .
 
 <https://bio.tools/SigUNet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0140,
         edam:topic_0154,
         edam:topic_0621,
@@ -70546,7 +56899,7 @@ For GPU (suggest): pip3 install -r requirement.gpu.txt""" ;
     sc:url "https://github.com/mbilab/SigUNet" .
 
 <https://bio.tools/Signaling_Pathways_Project> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0749,
         edam:topic_3169,
@@ -70576,7 +56929,7 @@ Transcriptomic Cistromics (ChIP-Seq)""" ;
     sc:url "https://www.signalingpathways.org" .
 
 <https://bio.tools/SigsPack> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0130,
         edam:topic_0199,
         edam:topic_2640 ;
@@ -70591,7 +56944,7 @@ Transcriptomic Cistromics (ChIP-Seq)""" ;
     sc:url "https://github.com/bihealth/SigsPack" .
 
 <https://bio.tools/SikuliX> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
         edam:topic_3382 ;
@@ -70602,7 +56955,7 @@ Transcriptomic Cistromics (ChIP-Seq)""" ;
     sc:url "http://sikulix.com" .
 
 <https://bio.tools/SiliS-PTOXRA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2840,
@@ -70622,7 +56975,7 @@ Transcriptomic Cistromics (ChIP-Seq)""" ;
     biotools:primaryContact "César R. García-Jacas" .
 
 <https://bio.tools/SimBSI> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3304,
         edam:topic_3384,
         edam:topic_3855 ;
@@ -70635,7 +56988,7 @@ Transcriptomic Cistromics (ChIP-Seq)""" ;
     sc:url "https://bitbucket.org/neatlabs/simbsi/" .
 
 <https://bio.tools/SimGEXPwMotifs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0749,
         edam:topic_3173,
@@ -70652,7 +57005,7 @@ Simulate gene expression data where gene expression is determined by a linear in
     sc:url "https://github.com/Sim19/SimGEXPwMotifs" .
 
 <https://bio.tools/SimPhospho> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -70674,7 +57027,7 @@ Simulate gene expression data where gene expression is determined by a linear in
         "Veronika Suni" .
 
 <https://bio.tools/SimRVSequences> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3053,
         edam:topic_3168 ;
@@ -70692,7 +57045,7 @@ Methods to simulate genetic sequence data for pedigrees, with functionality to s
     sc:url "https://cran.r-project.org/web/packages/SimRVSequences/" .
 
 <https://bio.tools/SimSpliceEvol> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0621,
         edam:topic_0623,
@@ -70713,7 +57066,7 @@ To delete sequences, you can click on those you want deleted and click the "Dele
     sc:url "https://github.com/UdeS-CoBIUS/SimSpliceEvol" .
 
 <https://bio.tools/SimVascular> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3335,
         edam:topic_3384,
         edam:topic_3474 ;
@@ -70724,7 +57077,7 @@ To delete sequences, you can click on those you want deleted and click the "Dele
     sc:url "http://simvascular.github.io/" .
 
 <https://bio.tools/SimkaMin> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3168,
         edam:topic_3174,
         edam:topic_3512 ;
@@ -70739,7 +57092,7 @@ To delete sequences, you can click on those you want deleted and click the "Dele
     sc:url "https://github.com/GATB/simka" .
 
 <https://bio.tools/SimpactCyan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3305,
         edam:topic_3324 ;
@@ -70752,7 +57105,7 @@ To delete sequences, you can click on those you want deleted and click the "Dele
     sc:url "https://simpactcyan.readthedocs.io/en/latest/" .
 
 <https://bio.tools/SimpleDSFviewer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0130 ;
     sc:citation <https://doi.org/10.1002/PRO.3703>,
@@ -70762,7 +57115,7 @@ To delete sequences, you can click on those you want deleted and click the "Dele
     sc:url "https://github.com/hscsun/SimpleDSFviewer-5.0.git" .
 
 <https://bio.tools/Simple_ClinVar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0602,
@@ -70788,25 +57141,8 @@ To delete sequences, you can click on those you want deleted and click the "Dele
         "Eduardo Pérez-Palma",
         "Marie Gramm" .
 
-<https://bio.tools/Singapore> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0621,
-        edam:topic_3050,
-        edam:topic_3277,
-        edam:topic_3382,
-        edam:topic_3500 ;
-    sc:citation <https://doi.org/10.3897/BDJ.7.E46833>,
-        "pmcid:PMC6917626",
-        "pubmed:31866739" ;
-    sc:description """From marine park to future genomic observatory? Enhancing marine biodiversity assessments using a biocode approach.
-
-The Biodiversity of Singapore""" ;
-    sc:featureList edam:operation_0308,
-        edam:operation_3200 ;
-    sc:name "Singapore" ;
-    sc:url "http://singapore.biodiversity.online" .
-
 <https://bio.tools/SingleCellNet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3170 ;
     sc:citation <https://doi.org/10.1016/J.CELS.2019.06.004>,
         "pmcid:PMC6715530",
@@ -70817,7 +57153,7 @@ The Biodiversity of Singapore""" ;
     sc:url "https://github.com/pcahan1/singleCellNet/" .
 
 <https://bio.tools/SingleCellSignalR> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0602,
         edam:topic_3170,
@@ -70830,7 +57166,7 @@ The Biodiversity of Singapore""" ;
     sc:url "https://github.com/SCA-IRCM" .
 
 <https://bio.tools/SinoPedia> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0218,
         edam:topic_3474 ;
@@ -70845,7 +57181,7 @@ The Biodiversity of Singapore""" ;
     sc:url "http://sinopedia.library.sh.cn/sparql" .
 
 <https://bio.tools/SkinPhaser> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3303,
         edam:topic_3360,
@@ -70861,7 +57197,7 @@ SkinPhaser is a Shiny app of predicing the circadian phase using expression valu
     sc:url "https://github.com/gangwug/SkinPhaser" .
 
 <https://bio.tools/SleepEEGNet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3474 ;
@@ -70880,7 +57216,7 @@ SkinPhaser is a Shiny app of predicing the circadian phase using expression valu
     biotools:primaryContact <https://orcid.org/0000-0002-3806-8487> .
 
 <https://bio.tools/SliceIt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_3512,
         edam:topic_3534 ;
@@ -70894,7 +57230,7 @@ SkinPhaser is a Shiny app of predicing the circadian phase using expression valu
     sc:url "http://sliceit.soic.iupui.edu/" .
 
 <https://bio.tools/Smart-3SEQ> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3170,
         edam:topic_3512 ;
@@ -70907,17 +57243,8 @@ SkinPhaser is a Shiny app of predicing the circadian phase using expression valu
     sc:name "Smart-3SEQ" ;
     sc:url "https://github.com/jwfoley/Smart-3SEQ_paper_scripts" .
 
-<https://bio.tools/SmartCube> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3071 ;
-    sc:citation <https://doi.org/10.1109/TVCG.2019.2934434>,
-        "pubmed:31442982" ;
-    sc:description "> MEDIUM CONFIDENCE! | > HOMEPAGE MISSING! | > CORRECT NAME OF TOOL COULD ALSO BE 'cuboids', 'cuboid', 'carefully-designed' | An Adaptive Data Management Architecture for the Real-Time Visualization of Spatiotemporal Datasets | Interactive visualization and exploration of large spatiotemporal data sets is difficult without carefully-designed data preprocessing and management tools. We propose a novel architecture for spatiotemporal data management. The architecture can dynamically update itself based on user queries. Datasets is stored in a tree-like structure to support memory sharing among cuboids in a logical structure of data cubes. An update mechanism is designed to create or remove cuboids on it, according to the analysis of the user queries, with the consideration of memory size limitation. Data structure is dynamically optimized according to different user queries. During a query process, user queries are recorded to predict the performance increment of the new cuboid" ;
-    sc:featureList edam:operation_0224 ;
-    sc:name "SmartCube" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31442982" .
-
 <https://bio.tools/Smart_Cancer_Predictive_System> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_3360,
         edam:topic_3421,
@@ -70934,7 +57261,7 @@ SkinPhaser is a Shiny app of predicing the circadian phase using expression valu
     sc:url "https://zhangzhiqiao2.shinyapps.io/Smart_cancer_predictive_system_HCC_2/" .
 
 <https://bio.tools/SmoothWin> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3298,
         edam:topic_3337 ;
@@ -70953,7 +57280,7 @@ The main function in the package utilizes a windowing function in the form of an
     sc:url "http://CRAN.R-project.org/package=SmoothWin" .
 
 <https://bio.tools/Smudgeplots> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0199,
         edam:topic_3315 ;
@@ -70966,32 +57293,8 @@ The main function in the package utilizes a windowing function in the form of an
     sc:name "Smudgeplots" ;
     sc:url "https://github.com/KamilSJaron/smudgeplot" .
 
-<https://bio.tools/Sniffles_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0196,
-        edam:topic_0621,
-        edam:topic_0625,
-        edam:topic_0749,
-        edam:topic_3673 ;
-    sc:citation <https://doi.org/10.1101/822593> ;
-    sc:description """Establishment of an eHAP1 Human Haploid Cell Line Hybrid Reference Genome Assembled from Short and Long Reads.
-
-Sniffles provide two different output formats VCF and BEDPE. Here we describe the different output and information that is provided.
-
-Shows the type of the SVs. Sniffles report deletions (DEL), duplications (DUP), insertions (INS), inversion (INV) and translocations (TRA) as the standard types. Furthermore, we report inverted duplications (INVDUP). Sniffles report cases where it is not certain what type the SVs is e.g. DEL/INV.
-
-||| NAME EQUAL TO (PUB. DIFFERENT) bio.tools/sniffles.
-
-||| COMMON LINK WITH (PUB. & NAME DIFFERENT) bio.tools/sniffles (GITHUB.COM/fritzsedlazeck/Sniffles/wiki).
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'eHAP1', 'ntEdit' (bio.tools/ntEdit), 'capture-clone', 'GridION'""" ;
-    sc:featureList edam:operation_0524,
-        edam:operation_0525,
-        edam:operation_3216 ;
-    sc:name "Sniffles_autogenerated" ;
-    sc:url "https://github.com/fritzsedlazeck/Sniffles/wiki/Output" .
-
 <https://bio.tools/Snorkel_DryBell> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0605,
         edam:topic_0621,
         edam:topic_3474 ;
@@ -71009,7 +57312,7 @@ Labeling and managing training datasets by hand is one of the biggest bottleneck
     sc:url "http://snorkel.stanford.edu" .
 
 <https://bio.tools/SnpHub> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Web service" ;
     sc:applicationSubCategory edam:topic_2885,
@@ -71030,7 +57333,7 @@ Labeling and managing training datasets by hand is one of the biggest bottleneck
     biotools:primaryContact "Weilong Guo" .
 
 <https://bio.tools/SoS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0769,
@@ -71055,7 +57358,7 @@ Labeling and managing training datasets by hand is one of the biggest bottleneck
     biotools:primaryContact "B. Peng" .
 
 <https://bio.tools/Solr-Plant> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0780,
         edam:topic_3050,
@@ -71078,7 +57381,7 @@ Labeling and managing training datasets by hand is one of the biggest bottleneck
     biotools:primaryContact <https://orcid.org/0000-0003-2054-7356> .
 
 <https://bio.tools/SonicParanoid> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0084,
@@ -71103,7 +57406,7 @@ Labeling and managing training datasets by hand is one of the biggest bottleneck
     biotools:primaryContact <https://orcid.org/0000-0002-1066-8659> .
 
 <https://bio.tools/SourceSet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
         edam:topic_2640,
@@ -71123,7 +57426,7 @@ Topological gene-set analysis has emerged as a powerful means for omic data inte
     sc:url "https://cran.r-project.org/web/packages/SourceSet/index.html" .
 
 <https://bio.tools/SouthGreen> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0622,
         edam:topic_0780,
@@ -71140,7 +57443,7 @@ Based on this strong local community in the field of agriculture, food, biodiver
     sc:url "https://southgreen.fr/" .
 
 <https://bio.tools/SouthGreen_Galaxy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_3810 ;
     sc:description "A Galaxy instance focused on agriculture, food, biodiversity and environment, from the Agropolis campus in France." ;
@@ -71150,14 +57453,13 @@ Based on this strong local community in the field of agriculture, food, biodiver
 
 <https://bio.tools/South_Green_Genome_Hubs> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0968" ;
-            sc:name "Keyword" ;
-            sc:sameAs "http://edamontology.org/data_0968" ] ;
+            sc:additionalType "http://edamontology.org/data_0968" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Keyword" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:name "Sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0622,
@@ -71178,7 +57480,7 @@ Based on this strong local community in the field of agriculture, food, biodiver
     biotools:primaryContact <https://orcid.org/0000-0003-1849-1269> .
 
 <https://bio.tools/SoyCSN> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3170,
         edam:topic_3308 ;
@@ -71194,26 +57496,21 @@ Based on this strong local community in the field of agriculture, food, biodiver
 
 <https://bio.tools/SoyMine> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ],
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:name "Sequence features" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2353" ;
-            sc:name "Ontology data" ;
-            sc:sameAs "http://edamontology.org/data_2353" ] ;
+            sc:additionalType "http://edamontology.org/data_2353" ;
+            sc:name "Ontology data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3753" ;
-            sc:name "Over-representation data" ;
-            sc:sameAs "http://edamontology.org/data_3753" ],
+            sc:additionalType "http://edamontology.org/data_3786" ;
+            sc:name "Query script" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3786" ;
-            sc:name "Query script" ;
-            sc:sameAs "http://edamontology.org/data_3786" ],
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:name "Sequence features" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3753" ;
+            sc:name "Over-representation data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application",
         "Web service" ;
@@ -71237,7 +57534,7 @@ Based on this strong local community in the field of agriculture, food, biodiver
     sc:url "https://mines.legumeinfo.org/soymine" .
 
 <https://bio.tools/SpCLUST> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:citation <https://doi.org/10.1016/J.COMPBIOMED.2019.103439>,
         "pubmed:31550555" ;
     sc:description "> HOMEPAGE MISSING! | Towards a fast and reliable clustering for potentially divergent biological sequences | This paper presents SpCLUST, a new C++ package that takes a list of sequences as input, aligns them with MUSCLE, computes their similarity matrix in parallel and then performs the clustering. SpCLUST extends a previously released software by integrating additional scoring matrices which enables it to cover the clustering of amino-acid sequences. The similarity matrix is now computed in parallel according to the master slave distributed architecture, using MPI. Performance analysis, realized on two real datasets of 100 nucleotide sequences and 1049 amino-acids ones, show that the resulting library substantially outperforms the original Python package. The proposed package was also intensively evaluated on simulated and real genomic and protein data sets. The clustering results were compared to the most known traditional tools, such as UCLUST, CD-HIT and DNACLUST" ;
@@ -71245,7 +57542,7 @@ Based on this strong local community in the field of agriculture, food, biodiver
     sc:url "https://github.com/johnymatar/SpCLUST" .
 
 <https://bio.tools/SpaCell> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3308,
         edam:topic_3382,
@@ -71261,25 +57558,8 @@ SpaCell has been developed for analysing spatial transcriptomics (ST) data, whic
     sc:name "SpaCell" ;
     sc:url "https://github.com/BiomedicalMachineLearning/SpaCell" .
 
-<https://bio.tools/SpaCell_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0634,
-        edam:topic_3308,
-        edam:topic_3382,
-        edam:topic_3474 ;
-    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTZ914>,
-        "pubmed:31808789" ;
-    sc:description """integrating tissue morphology and spatial gene expression to predict disease cells.
-
-SpaCell has been developed for analysing spatial transcriptomics (ST) data, which include imaging data of tissue sections and RNA expression data across the tissue sections. The ST data add a novel spatial dimension to the traditional gene expression data from dissociated cells. SpaCell is desinged to integrates the two histopathological imaging and sequencing fields, with the ultimate aim to discover novel biology and to improve histopathological diagnosis in a quantitative and automated way""" ;
-    sc:featureList edam:operation_2454,
-        edam:operation_2495,
-        edam:operation_3799 ;
-    sc:license "MIT" ;
-    sc:name "SpaCell_autogenerated" ;
-    sc:url "https://github.com/BiomedicalMachineLearning/SpaCell" .
-
 <https://bio.tools/SpaRC> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3174,
@@ -71299,7 +57579,7 @@ SpaCell has been developed for analysing spatial transcriptomics (ST) data, whic
     biotools:primaryContact "Zhong Wang" .
 
 <https://bio.tools/Spaced_Radiology> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3384,
@@ -71319,7 +57599,7 @@ SpaCell has been developed for analysing spatial transcriptomics (ST) data, whic
     biotools:primaryContact <https://orcid.org/0000-0003-1953-4486> .
 
 <https://bio.tools/Spaniel> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3308 ;
@@ -71339,25 +57619,8 @@ SpaCell has been developed for analysing spatial transcriptomics (ST) data, whic
     sc:url "https://github.com/RachelQueen1/Spaniel" ;
     biotools:primaryContact "Rachel Queen" .
 
-<https://bio.tools/SparK_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0203,
-        edam:topic_3168,
-        edam:topic_3512 ;
-    sc:citation <https://doi.org/10.1101/845529> ;
-    sc:description """A Publication-quality NGS Visualization Tool.
-
-SparK - Publication quality NGS data plotting (Version 2.4.1).
-
-SparK will exctract gene and transcript information from column 3 of the gff file.
-
-||| NAME (SparK) SIMILAR TO (PUB. DIFFERENT) bio.tools/SPar-K (SPar-K)""" ;
-    sc:featureList edam:operation_0337,
-        edam:operation_3435 ;
-    sc:name "SparK_autogenerated" ;
-    sc:url "https://github.com/harbourlab/SparK" .
-
 <https://bio.tools/Spark> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2830,
         edam:topic_3315,
@@ -71372,7 +57635,7 @@ SparK will exctract gene and transcript information from column 3 of the gff fil
     sc:url "http://spark.apache.org/" .
 
 <https://bio.tools/SparkGA2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_0769,
         edam:topic_3168,
@@ -71391,7 +57654,7 @@ SparkGA2 is an Apache Spark based scalable implementation of the best practice D
     sc:url "https://github.com/HamidMushtaq/SparkGA2" .
 
 <https://bio.tools/SpatialDB> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_2229,
         edam:topic_3170,
@@ -71409,16 +57672,8 @@ Spatially resolved transcriptomics providing gene expression profiles with posit
     sc:name "SpatialDB" ;
     sc:url "https://www.spatialomics.org/SpatialDB" .
 
-<https://bio.tools/Spatiotemporal_Residual_Attentive_Networks> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0602 ;
-    sc:citation <https://doi.org/10.1109/TIP.2019.2936112>,
-        "pubmed:31449021" ;
-    sc:description "> VERY_LOW CONFIDENCE! | > CORRECT NAME OF TOOL COULD ALSO BE 'convGRU', 'saliency', 'attentive', 'eye-fixation' | Video Saliency Prediction using Spatiotemporal Residual Attentive Networks | This repository is the implementation of 'Video Saliency Prediction using Spatiotemporal Residual Attentive Networks (TIP2019)'" ;
-    sc:name "Spatiotemporal Residual Attentive Networks" ;
-    sc:url "https://github.com/ashleylqx/STRA-Net" .
-
 <https://bio.tools/Spectral_Jaccard_Similarity> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1101/800581> ;
     sc:description """A new approach to estimating pairwise sequence alignments.
@@ -71432,22 +57687,8 @@ To create filtered datasets run Bacterial_pipeline_part1.py and Bacterial_pipeli
     sc:name "Spectral Jaccard Similarity" ;
     sc:url "https://github.com/TavorB/spectral_jaccard_similarity" .
 
-<https://bio.tools/Spectrum_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3170,
-        edam:topic_3474,
-        edam:topic_3577 ;
-    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTZ704>,
-        "pubmed:31501851" ;
-    sc:description "Fast density-aware spectral clustering for single and multi-omic data | Fast Adaptive Spectral Clustering for Single and Multi-View Data | A self-tuning spectral clustering method for single or multi-view data. 'Spectrum' uses a new type of adaptive density aware kernel that strengthens connections in the graph based on common nearest neighbours. It uses a tensor product graph data integration and diffusion procedure to integrate different data sources and reduce noise. 'Spectrum' uses either the eigengap or multimodality gap heuristics to determine the number of clusters. The method is sufficiently flexible so that a wide range of Gaussian and non-Gaussian structures can be clustered with automatic selection of K" ;
-    sc:featureList edam:operation_3432,
-        edam:operation_3694,
-        edam:operation_3860 ;
-    sc:license "AGPL-3.0" ;
-    sc:name "Spectrum_autogenerated" ;
-    sc:url "https://cran.r-project.org/web/packages/Spectrum/index.html" .
-
 <https://bio.tools/SpikeInterface> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3304 ;
     sc:citation <https://doi.org/10.1101/796599> ;
     sc:description """SpikeInterface is an unified framework for spike sorting.
@@ -71460,7 +57701,7 @@ Python-based module for extracting from, converting between, and interfacing wit
     sc:url "http://github.com/SpikeInterface" .
 
 <https://bio.tools/SpineJ> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3304,
         edam:topic_3382,
         edam:topic_3406 ;
@@ -71471,17 +57712,8 @@ Python-based module for extracting from, converting between, and interfacing wit
     sc:name "SpineJ" ;
     sc:url "https://github.com/flevet/SpineJ" .
 
-<https://bio.tools/SpliVert> a sc:SoftwareApplication ;
-    sc:citation <https://doi.org/10.2174/0929866526666190806143959>,
-        "pubmed:31385760" ;
-    sc:description "> MEDIUM CONFIDENCE! | > HOMEPAGE MISSING! | A Protein Multiple Sequence Alignment Refinement Method Based on Splitting-Splicing Vertically | BACKGROUND:Multiple sequence alignment (MSA) is a fundamental task in bioinformatics and is required for many biological analysis tasks. The more accurate the alignments are, the more credible the downstream analyses are. Most of the protein MSA algorithms realign alignment to refine it by dividing it into two groups horizontally and realign the two groups. However, this strategy doesn't consider that different regions of the sequences have different conservation, and this property may lead to incorrect residue-residue or residue-gap pairs which could not be corrected by this strategy. METHOD:Here, we present a novel refinement method based on splitting-splicing vertically, called SpliVert" ;
-    sc:featureList edam:operation_0322,
-        edam:operation_2089 ;
-    sc:name "SpliVert" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31385760" .
-
 <https://bio.tools/SpliceFinder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0114,
         edam:topic_3320,
         edam:topic_3474 ;
@@ -71498,7 +57730,7 @@ This is the source code for SpliceFinder""" ;
     sc:url "https://gitlab.deepomics.org/wangruohan/SpliceFinder" .
 
 <https://bio.tools/SpliceLauncher> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3320,
         edam:topic_3512,
@@ -71520,7 +57752,7 @@ SpliceLauncher comes with a ready to use config.cfg file. It contains the paths
     sc:url "https://github.com/raphaelleman/SpliceLauncher" .
 
 <https://bio.tools/SpliceV> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3320,
@@ -71542,7 +57774,7 @@ SpliceLauncher comes with a ready to use config.cfg file. It contains the paths
     biotools:primaryContact "Erik Flemington" .
 
 <https://bio.tools/SpliceVec-g> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3307,
         edam:topic_3474 ;
@@ -71556,7 +57788,7 @@ SpliceLauncher comes with a ready to use config.cfg file. It contains the paths
     sc:url "https://github.com/aaiitggrp/SpliceVec-g" .
 
 <https://bio.tools/SpliceVisuL> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0621,
         edam:topic_3474 ;
@@ -71571,7 +57803,7 @@ SpliceVisuL: Visualization of Bidirectional Long Short-term Memory Networks for
     sc:url "https://github.com/aaiitggrp/SpliceVisuL" .
 
 <https://bio.tools/Spliceogen> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3320,
@@ -71591,7 +57823,7 @@ SpliceVisuL: Visualization of Bidirectional Long Short-term Memory Networks for
     biotools:primaryContact "Steve Monger" .
 
 <https://bio.tools/SpydrPick> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2885,
         edam:topic_3174 ;
@@ -71606,7 +57838,7 @@ SpliceVisuL: Visualization of Bidirectional Long Short-term Memory Networks for
     sc:url "https://anaconda.org/bioconda/spydrpick" .
 
 <https://bio.tools/Squiggle> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3068,
         edam:topic_3293,
@@ -71623,7 +57855,7 @@ SpliceVisuL: Visualization of Bidirectional Long Short-term Memory Networks for
     sc:url "https://github.com/Lab41/squiggle" .
 
 <https://bio.tools/SssI> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3295,
         edam:topic_3674 ;
@@ -71638,7 +57870,7 @@ SpliceVisuL: Visualization of Bidirectional Long Short-term Memory Networks for
     sc:url "http://bioserv.mps.ohio-state.edu/SssICalc" .
 
 <https://bio.tools/Sstack> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0602 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btz010>,
@@ -71656,7 +57888,7 @@ SpliceVisuL: Visualization of Bidirectional Long Short-term Memory Networks for
     biotools:primaryContact "Kevin Matlock" .
 
 <https://bio.tools/StackCBPred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0160,
         edam:topic_3474 ;
@@ -71668,7 +57900,7 @@ SpliceVisuL: Visualization of Bidirectional Long Short-term Memory Networks for
     sc:url "https://bmll.cs.uno.edu/" .
 
 <https://bio.tools/StanEx1> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0749,
@@ -71690,7 +57922,7 @@ SpliceVisuL: Visualization of Bidirectional Long Short-term Memory Networks for
         "Seung K. Kim" .
 
 <https://bio.tools/Staphopia> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0625,
         edam:topic_2885,
@@ -71707,7 +57939,7 @@ SpliceVisuL: Visualization of Bidirectional Long Short-term Memory Networks for
     sc:url "http://staphopia.emory.edu" .
 
 <https://bio.tools/StatAlign> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_3293 ;
@@ -71732,7 +57964,7 @@ SpliceVisuL: Visualization of Bidirectional Long Short-term Memory Networks for
         "Joe Herman" .
 
 <https://bio.tools/StereoMate> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_3382 ;
     sc:citation <https://doi.org/10.1101/648337> ;
@@ -71748,7 +57980,7 @@ SpliceVisuL: Visualization of Bidirectional Long Short-term Memory Networks for
         "Steven J. West" .
 
 <https://bio.tools/StoatyDive> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0166,
         edam:topic_3169,
@@ -71769,28 +58001,8 @@ StoatyDive is a tool to evaluate and classify predicted peak profiles to assess
     sc:name "StoatyDive" ;
     sc:url "https://anaconda.org/bioconda/stoatydive" .
 
-<https://bio.tools/Storyline> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3377,
-        edam:topic_3379 ;
-    sc:citation <https://doi.org/10.7759/CUREUS.6071>,
-        "pmcid:PMC6892578",
-        "pubmed:31832289" ;
-    sc:description """Effect of Paper- and Computer-based Simulated Instructions on Clinical Reasoning Skills of Undergraduate Medical Students.
-
-Build Interactive E-Learning with Storyline 3.
-
-Create virtually any interaction you can imagine, in minutes. And with latest perpetual version, you'll be able to deliver mobile courses effortlessly.
-
-Clicking this link will get you banned.
-
-Compare Storyline 3 to Articulate 360.
-
-Create interactive courses for any device""" ;
-    sc:name "Storyline" ;
-    sc:url "https://articulate.com/p/storyline-3" .
-
 <https://bio.tools/StrainHub> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3293,
         edam:topic_3305,
         edam:topic_3324 ;
@@ -71805,7 +58017,7 @@ Create interactive courses for any device""" ;
     sc:url "http://strainhub.io" .
 
 <https://bio.tools/StressGenePred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0780,
         edam:topic_3308,
         edam:topic_3360,
@@ -71831,7 +58043,7 @@ python learn.py dataset/dataset_learn_v2_005.limma.csv dataset/dataset_learn_v2_
     sc:url "https://github.com/bhi-kimlab/StressGenePred" .
 
 <https://bio.tools/String-pulling> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0625,
         edam:topic_3300,
@@ -71847,7 +58059,7 @@ python learn.py dataset/dataset_learn_v2_005.limma.csv dataset/dataset_learn_v2_
     sc:url "https://github.com/samsoon-inayat/string_pulling_mouse_matlab" .
 
 <https://bio.tools/Stripes> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0625,
         edam:topic_2885 ;
@@ -71863,7 +58075,7 @@ python learn.py dataset/dataset_learn_v2_005.limma.csv dataset/dataset_learn_v2_
     sc:url "https://github.com/CarlborgGenomics/Stripes" .
 
 <https://bio.tools/StructAlign> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0097,
@@ -71883,7 +58095,7 @@ python learn.py dataset/dataset_learn_v2_005.limma.csv dataset/dataset_learn_v2_
     sc:url "http://mouse.genebee.msu.ru/tools/StructAlign.html" .
 
 <https://bio.tools/StructureProfiler> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0166,
@@ -71903,7 +58115,7 @@ python learn.py dataset/dataset_learn_v2_005.limma.csv dataset/dataset_learn_v2_
     biotools:primaryContact "Matthias Rarey" .
 
 <https://bio.tools/Struo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3174,
         edam:topic_3697,
         edam:topic_3837 ;
@@ -71916,7 +58128,7 @@ python learn.py dataset/dataset_learn_v2_005.limma.csv dataset/dataset_learn_v2_
     sc:url "https://github.com/leylabmpi/Struo" .
 
 <https://bio.tools/StudyPortal> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3063,
         edam:topic_3379 ;
@@ -71931,7 +58143,7 @@ python learn.py dataset/dataset_learn_v2_005.limma.csv dataset/dataset_learn_v2_
     sc:url "https://studyportal.uni-muenster.de" .
 
 <https://bio.tools/SuAVE> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0153,
         edam:topic_3314,
         edam:topic_3448 ;
@@ -71944,7 +58156,7 @@ python learn.py dataset/dataset_learn_v2_005.limma.csv dataset/dataset_learn_v2_
     sc:url "http://www.biomatsite.net/suave-software" .
 
 <https://bio.tools/SuCOS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2258,
         edam:topic_2275,
@@ -71963,7 +58175,7 @@ python learn.py dataset/dataset_learn_v2_005.limma.csv dataset/dataset_learn_v2_
     sc:url "https://github.com/susanhleung/SuCOS" .
 
 <https://bio.tools/SubMito-XGBoost> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0209,
         edam:topic_0621,
         edam:topic_0634,
@@ -71981,7 +58193,7 @@ MOTIVATION:Mitochondria are an essential organelle in most eukaryotes. They not
     sc:url "https://github.com/QUST-AIBBDRC/SubMito-XGBoost/" .
 
 <https://bio.tools/Subdyquency> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0602,
@@ -72002,7 +58214,7 @@ MOTIVATION:Mitochondria are an essential organelle in most eukaryotes. They not
     biotools:primaryContact <https://orcid.org/0000-0002-9572-951X> .
 
 <https://bio.tools/SugarSketcher> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0152,
@@ -72022,46 +58234,21 @@ MOTIVATION:Mitochondria are an essential organelle in most eukaryotes. They not
 
 <https://bio.tools/Sugarcane_Genome_Hub> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ],
-        [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0968" ;
-            sc:name "Keyword" ;
-            sc:sameAs "http://edamontology.org/data_0968" ],
-        [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2080" ;
-            sc:name "Database search results" ;
-            sc:sameAs "http://edamontology.org/data_2080" ],
-        [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2080" ;
-            sc:name "Database search results" ;
-            sc:sameAs "http://edamontology.org/data_2080" ],
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:name "Sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0968" ;
-            sc:name "Keyword" ;
-            sc:sameAs "http://edamontology.org/data_0968" ],
+            sc:additionalType "http://edamontology.org/data_0968" ;
+            sc:name "Keyword" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2080" ;
+            sc:name "Database search results" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:name "Sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ],
-        [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ],
-        [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:name "Sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0621,
@@ -72080,7 +58267,7 @@ MOTIVATION:Mitochondria are an essential organelle in most eukaryotes. They not
     biotools:primaryContact <https://orcid.org/0000-0001-8869-3689> .
 
 <https://bio.tools/SulfAtlas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0623 ;
     sc:description "SulfAtlas describes the family and sub-families of structurally-related sulfatases. Sub-families are created based on phylogenetic analyses and essentially correspond to different substrate specificities." ;
@@ -72088,7 +58275,7 @@ MOTIVATION:Mitochondria are an essential organelle in most eukaryotes. They not
     sc:url "http://abims.sb-roscoff.fr/sulfatlas" .
 
 <https://bio.tools/SumHer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2885,
@@ -72109,7 +58296,7 @@ MOTIVATION:Mitochondria are an essential organelle in most eukaryotes. They not
     biotools:primaryContact "Doug Speed" .
 
 <https://bio.tools/Sumer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0602,
@@ -72130,7 +58317,7 @@ MOTIVATION:Mitochondria are an essential organelle in most eukaryotes. They not
     biotools:primaryContact "Zhiao Shi" .
 
 <https://bio.tools/SummaryAUC> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2885,
@@ -72152,7 +58339,7 @@ MOTIVATION:Mitochondria are an essential organelle in most eukaryotes. They not
         "Lei Song" .
 
 <https://bio.tools/Super-Resolution> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3384,
         edam:topic_3474,
         edam:topic_3794 ;
@@ -72164,7 +58351,7 @@ MOTIVATION:Mitochondria are an essential organelle in most eukaryotes. They not
     sc:url "https://github.com/aamir-mustafa/super-resolution-adversarial-defense" .
 
 <https://bio.tools/SuperCRF> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0634,
         edam:topic_2640,
@@ -72180,7 +58367,7 @@ Super CRF toolbox for training an conditional random field in combination with s
     sc:url "https://github.com/Henrik86/SuperCRF" .
 
 <https://bio.tools/SuperCryoEMPicker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0611,
         edam:topic_3384,
         edam:topic_3444 ;
@@ -72194,7 +58381,7 @@ Super CRF toolbox for training an conditional random field in combination with s
     sc:url "https://github.com/jianlin-cheng/SuperCryoEMPicker" .
 
 <https://bio.tools/SureTypeSC> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Script" ;
     sc:applicationSubCategory edam:topic_0625,
@@ -72217,7 +58404,7 @@ Super CRF toolbox for training an conditional random field in combination with s
     biotools:primaryContact "Ivan Vogel" .
 
 <https://bio.tools/SurfCut> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3382 ;
@@ -72238,27 +58425,8 @@ Super CRF toolbox for training an conditional random field in combination with s
     sc:url "https://github.com/sverger/SurfCut" ;
     biotools:primaryContact <https://orcid.org/0000-0003-3643-3978> .
 
-<https://bio.tools/SurfelMeshing> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3382,
-        edam:topic_3519 ;
-    sc:citation <https://doi.org/10.1109/TPAMI.2019.2947048>,
-        "pubmed:31613751" ;
-    sc:description """Online Surfel-Based Mesh Reconstruction.
-
-Real-time surfel-based mesh reconstruction from RGB-D video.
-
-SurfelMeshing is an approach for real-time surfel-based mesh reconstruction from RGB-D video, described in the following article:.
-
-The repository contains the SurfelMeshing application and the library it is based on, libvis. The library is work-in-progress and it is not recommended to use it for other projects at this point""" ;
-    sc:featureList edam:operation_0337,
-        edam:operation_3435,
-        edam:operation_3799 ;
-    sc:license "BSD-3-Clause" ;
-    sc:name "SurfelMeshing" ;
-    sc:url "https://github.com/puzzlepaint/surfelmeshing" .
-
 <https://bio.tools/SweGen> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3399,
         edam:topic_3421 ;
@@ -72270,26 +58438,8 @@ The repository contains the SurfelMeshing application and the library it is base
     sc:name "SweGen" ;
     sc:url "https://swegen-exac.nbis.se/" .
 
-<https://bio.tools/SweHLA> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0102,
-        edam:topic_0625,
-        edam:topic_2830,
-        edam:topic_3168 ;
-    sc:citation <https://doi.org/10.1038/S41431-019-0559-2>,
-        "pubmed:31844174" ;
-    sc:description """the high confidence HLA typing bio-resource drawn from 1000 Swedish genomes.
-
-There is a need to accurately call human leukocyte antigen (HLA) genes from existing short-read sequencing data, however there is no single solution that matches the gold standard of Sanger sequenced lab typing. Here we aimed to combine results from available software programs, minimizing the biases of applied algorithm and HLA reference. The result is a robust HLA population resource for the published 1000 Swedish genomes, and a framework for future HLA interrogation. HLA 2nd-field alleles were called using four imputation and inference methods for the classical eight genes (class I: HLA-A, HLA-B, HLA-C; class II: HLA-DPA1, HLA-DPB1, HLA-DQA1, HLA-DQB1, HLA-DRB1). A high confidence population set (SweHLA) was determined using an n-1 concordance rule for class I (four software) and class II (three software) alleles.
-
-||| HOMEPAGE MISSING!""" ;
-    sc:featureList edam:operation_3196,
-        edam:operation_3227,
-        edam:operation_3557 ;
-    sc:name "SweHLA" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31844174" .
-
 <https://bio.tools/SwiftOrtho> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0114,
         edam:topic_0621,
         edam:topic_0622,
@@ -72310,25 +58460,8 @@ SwiftOrtho is orthology analysis tool which identifies orthologs, paralogs and c
     sc:name "SwiftOrtho" ;
     sc:url "https://github.com/Rinoahu/SwiftOrtho" .
 
-<https://bio.tools/SwimBIT> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0610,
-        edam:topic_0769,
-        edam:topic_3474 ;
-    sc:citation <https://doi.org/10.3390/SPORTS7110238>,
-        "pmcid:PMC6915422",
-        "pubmed:31744156" ;
-    sc:description """A Novel Approach to Stroke Analysis During Swim Training Based on Attitude and Heading Reference System (AHRS).
-
-In a world where technology is assuming a pervasive role, sports sciences are also increasingly exploiting the possibilities opened by advanced sensors and intelligent algorithms. This paper focuses on the development of a convenient, practical, and low-cost system, SwimBIT, which is intended to help swimmers and coaches in performance evaluation, improvement, and injury reduction. Real-world data were collected from 13 triathletes (age 20.8 ± 3.5 years, height 173.7 ± 5.3 cm, and weight 63.5 ± 6.3 kg) with different skill levels in performing the four competitive styles of swimming in order to develop a representative database and allow assessment of the system's performance in swimming conditions.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'swimmers coaches', 'swimmers', 'AHRS', 'coaches'""" ;
-    sc:name "SwimBIT" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31744156" .
-
 <https://bio.tools/Swish> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3170,
         edam:topic_3512 ;
@@ -72343,7 +58476,7 @@ In a world where technology is assuming a pervasive role, sports sciences are al
     sc:url "https://github.com/azhu513/swishPaper" .
 
 <https://bio.tools/SyQADA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0769,
@@ -72362,7 +58495,7 @@ In a world where technology is assuming a pervasive role, sports sciences are al
     biotools:primaryContact "Paul Scheet" .
 
 <https://bio.tools/SyRI> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
         edam:topic_2885,
@@ -72383,7 +58516,7 @@ Genomic differences range from single nucleotide differences to complex structur
     sc:url "https://schneebergerlab.github.io/syri/" .
 
 <https://bio.tools/SymPy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3569 ;
     sc:citation <https://doi.org/10.7287/PEERJ.PREPRINTS.2083V2>,
         <https://doi.org/10.7287/PEERJ.PREPRINTS.2083V3> ;
@@ -72396,7 +58529,7 @@ SymPy is an open source computer algebra system written in pure Python. It is bu
     sc:url "https://www.sympy.org/en/index.html" .
 
 <https://bio.tools/SynBioHub> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0780,
         edam:topic_3398,
         edam:topic_3895 ;
@@ -72410,7 +58543,7 @@ SymPy is an open source computer algebra system written in pure Python. It is bu
     sc:url "https://synbiohub.org" .
 
 <https://bio.tools/SynQuant> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3304,
         edam:topic_3382,
@@ -72432,7 +58565,7 @@ SynQuant performs better than peer unsupervised methods [5-8] for all the three
     sc:url "https://github.com/yu-lab-vt/SynQuant" .
 
 <https://bio.tools/SynTViewTools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:description "Specific tools for pre-processing datas in order to use them in SynTView." ;
@@ -72440,7 +58573,7 @@ SynQuant performs better than peer unsupervised methods [5-8] for all the three
     sc:url "https://bioweb.pasteur.fr/packages/pack@SynTViewTools@0.0.1" .
 
 <https://bio.tools/SyntDB> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_3170,
         edam:topic_3308,
@@ -72455,7 +58588,7 @@ SyntDB - the database of human long non-coding RNAs conserved across primates. C
     sc:url "http://syntdb.amu.edu.pl/" .
 
 <https://bio.tools/Synteny_Browser> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0091,
         edam:topic_0102,
@@ -72483,7 +58616,7 @@ Reference species (outer ring) Mus musculus Homo sapiens""" ;
     sc:url "http://syntenybrowser.jax.org/" .
 
 <https://bio.tools/T-Gene> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0621,
         edam:topic_0749,
@@ -72500,7 +58633,7 @@ Abstract Motivation Identifying the genes regulated by a given transcription fac
     sc:url "http://meme-suite.org/tools/tgene" .
 
 <https://bio.tools/T-Library> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0218,
         edam:topic_3379,
         edam:topic_3473 ;
@@ -72518,7 +58651,7 @@ Yamada T, Kondo Y, Momosaki R. 2019. Automated data extraction software for medi
     sc:url "http://www.picoron.com/tlibrary/" .
 
 <https://bio.tools/T-MTSCCA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2885,
         edam:topic_3384,
         edam:topic_3444 ;
@@ -72532,7 +58665,7 @@ Yamada T, Kondo Y, Momosaki R. 2019. Automated data extraction software for medi
     sc:url "https://github.com/dulei323/TMTSCCA" .
 
 <https://bio.tools/T-lex3> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0625,
         edam:topic_0780,
@@ -72553,7 +58686,7 @@ Problems during installation? Try our DOCKER file.""" ;
     sc:url "https://github.com/GonzalezLab/T-lex3" .
 
 <https://bio.tools/T-psi-C> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_0659,
         edam:topic_3047,
@@ -72578,7 +58711,7 @@ See available and generated models""" ;
     sc:url "http://tpsic.igcz.poznan.pl" .
 
 <https://bio.tools/T1D> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3379,
         edam:topic_3390,
         edam:topic_3418 ;
@@ -72590,7 +58723,7 @@ See available and generated models""" ;
     sc:url "http://T1DToolkit.org" .
 
 <https://bio.tools/T1TAdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0659,
@@ -72609,7 +58742,7 @@ See available and generated models""" ;
         "Nicolas J. Tourasse" .
 
 <https://bio.tools/TACITuS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3308,
         edam:topic_3518 ;
@@ -72624,7 +58757,7 @@ See available and generated models""" ;
     sc:url "https://tacitus.app/" .
 
 <https://bio.tools/TAD-Lactuca> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3169,
         edam:topic_3295,
@@ -72643,7 +58776,7 @@ TAD-Lactuca is a tool to predict Topologically Associating Domains(TAD) boundary
     sc:url "https://github.com/LoopGan/TAD-Lactuca" .
 
 <https://bio.tools/TADA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3293,
         edam:topic_3697 ;
@@ -72655,7 +58788,7 @@ TAD-Lactuca is a tool to predict Topologically Associating Domains(TAD) boundary
     sc:url "https://github.com/tada-alg/TADA" .
 
 <https://bio.tools/TAGOOS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2885,
         edam:topic_3512,
@@ -72676,7 +58809,7 @@ TAD-Lactuca is a tool to predict Topologically Associating Domains(TAD) boundary
     sc:url "https://github.com/aitgon/tagoos" .
 
 <https://bio.tools/TAMMiCol> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_3382,
@@ -72699,7 +58832,7 @@ TAD-Lactuca is a tool to predict Topologically Associating Domains(TAD) boundary
     biotools:primaryContact "H. Tronnolone" .
 
 <https://bio.tools/TAPAS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3512,
@@ -72719,29 +58852,8 @@ TAD-Lactuca is a tool to predict Topologically Associating Domains(TAD) boundary
     biotools:primaryContact "Tao Jiang",
         "Xinshu Xiao" .
 
-<https://bio.tools/TAP_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_2269,
-        edam:topic_3474,
-        edam:topic_3794 ;
-    sc:citation <https://doi.org/10.1371/JOURNAL.PONE.0225196>,
-        "pmcid:PMC6860437",
-        "pubmed:31738786" ;
-    sc:description """A static analysis model for PHP vulnerabilities based on token and deep learning technology.
-
-With the widespread usage of Web applications, the security issues of source code are increasing. The exposed vulnerabilities seriously endanger the interests of service providers and customers. There are some models for solving this problem. However, most of them rely on complex graphs generated from source code or regex patterns based on expert experience. In this paper, TAP, which is based on token mechanism and deep learning technology, was proposed as an analysis model to discover the vulnerabilities of PHP: Hypertext Preprocessor (PHP) Web programs conveniently and easily. Based on the token mechanism of PHP language, a custom tokenizer was designed, and it unifies tokens, supports some features of PHP and optimizes the parsing.
-
-||| HOMEPAGE MISSING!.
-
-||| NAME EQUAL TO (PUB. DIFFERENT) bio.tools/tap.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'tokenizer'""" ;
-    sc:featureList edam:operation_1812,
-        edam:operation_3802 ;
-    sc:name "TAP_autogenerated" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31738786" .
-
 <https://bio.tools/TAR-VIR> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3174,
@@ -72763,14 +58875,12 @@ With the widespread usage of Web applications, the security issues of source cod
 
 <https://bio.tools/TARA_BLAST_Service> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0857" ;
-            sc:name "Sequence search results" ;
-            sc:sameAs "http://edamontology.org/data_0857" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0857" ;
+            sc:name "Sequence search results" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0622 ;
@@ -72785,7 +58895,7 @@ With the widespread usage of Web applications, the security issues of source cod
     sc:url "http://bioinfo.szn.it/tara-oceans-data-blast-service/" .
 
 <https://bio.tools/TASBE_Flow_Analytics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3382,
@@ -72806,7 +58916,7 @@ With the widespread usage of Web applications, the security issues of source cod
     biotools:primaryContact "Jacob Beal" .
 
 <https://bio.tools/TAXyl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0121,
         edam:topic_0821,
@@ -72827,25 +58937,8 @@ Xylanases are involved in lignocellulosic biomass degradation and the enzyme opt
     sc:name "TAXyl" ;
     sc:url "https://github.com/mehdiforoozandeh/TAXyl" .
 
-<https://bio.tools/TBD-DDx> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0634,
-        edam:topic_2269,
-        edam:topic_3063,
-        edam:topic_3399 ;
-    sc:citation <https://doi.org/10.1093/OFID/OFZ360.1202>,
-        "pmcid:PMC6808839" ;
-    sc:description """1338. Development of a Novel Application for Differential Diagnosis of Tick-borne Diseases.
-
-AbstractBackgroundEarly diagnosis and treatment of tick-borne diseases (TBDs) is critical for mitigating their adverse health outcomes, but the differential diagnosis of TBDs is challenging because many symptoms are nonspecific and commonly used diagnostic assays have significant shortcomings. Furthermore, although the local incidence of TBDs is recognized as an important factor in diagnosis, tools to help clinicians formally consider surveillance data in their decision-making are not available. To address these gaps, Gryphon Scientific developed a differential diagnosis application (app) for TBDs that calculates a patient’s likelihood of infection with specific TBDs based on their symptoms, risk factors, and state of suspected tick exposure.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'TBDs', 'BBN', 'TBD', 'diagnosis'""" ;
-    sc:name "TBD-DDx" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6808839/" .
-
 <https://bio.tools/TB_Portals> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Bioinformatics portal",
         "Database portal",
         "Web application" ;
@@ -72867,39 +58960,8 @@ Leveraging clinical, genomic, and imaging data.""" ;
     sc:name "TB Portals" ;
     sc:url "https://tbportals.niaid.nih.gov" .
 
-<https://bio.tools/TB_Portals_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_2885,
-        edam:topic_3063,
-        edam:topic_3324,
-        edam:topic_3382 ;
-    sc:citation <https://doi.org/10.1016/J.MEEGID.2019.104137>,
-        "pubmed:31838261" ;
-    sc:description """Comparative analysis of genomic variability for drug-resistant strains of Mycobacterium tuberculosis.
-
-International partnership for clinical informatics.
-
-and advanced research in tuberculosis.
-
-Leveraging clinical, genomic, and imaging data.
-
-||| COMMON LINK WITH (PUB. & NAME DIFFERENT) bio.tools/hasp (NIAID.NIH.GOV), bio.tools/nephele (NIAID.NIH.GOV), bio.tools/spice (NIAID.NIH.GOV).
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'TB Portals Program', 'DR-TB', 'TBPP', 'Comparative analysis genomic variability drug-resistant strains Mycobacterium tuberculosis'""" ;
-    sc:name "TB Portals_autogenerated" ;
-    sc:url "https://TBPortals.niaid.nih.gov" .
-
-<https://bio.tools/TBench> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0089,
-        edam:topic_3365 ;
-    sc:citation <https://doi.org/10.3233/SHTI190478>,
-        "pubmed:31438175" ;
-    sc:description "> HOMEPAGE MISSING! | A Collaborative Work Platform for Multilingual Terminology Editing and Development | Terminology facilitates consistent use and semantic integration of heterogeneous, multimodal data within and across domains. This paper presents TBench (Termilology Workbench) for multilingual terminology editing and development within a distributed environment. TBench is a web-service Java tool consisting of two main functionalities that are knowledge construction (i.e.extended model based on ISO25964, batch reusing and constructing multilingual concept hierarchy and relationships) and collaborative control in order to achieve custom extensions, reuse, multilingual alignment, integration and refactoring" ;
-    sc:featureList edam:operation_3096 ;
-    sc:name "TBench" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31438175" .
-
 <https://bio.tools/TCGA-LGG> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0203,
         edam:topic_3360,
@@ -72915,7 +58977,7 @@ Leveraging clinical, genomic, and imaging data.
     sc:url "https://portal.gdc.cancer.gov/projects/TCGA-LGG" .
 
 <https://bio.tools/TCGenerators> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3293 ;
     sc:citation <https://doi.org/10.1371/JOURNAL.PCBI.1007347>,
@@ -72929,7 +58991,7 @@ Leveraging clinical, genomic, and imaging data.
     sc:url "https://github.com/bielcardona/TCGenerators" .
 
 <https://bio.tools/TCMSP> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0140,
         edam:topic_0202,
         edam:topic_0749,
@@ -72942,10 +59004,10 @@ Leveraging clinical, genomic, and imaging data.
     sc:featureList edam:operation_2436,
         edam:operation_2489 ;
     sc:name "TCMSP" ;
-    sc:url "https://tcmspw.com/tcmsp.php" .
+    sc:url "https://old.tcmsp-e.com/tcmsp.php" .
 
 <https://bio.tools/TCRE> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0218,
         edam:topic_0602,
@@ -72963,39 +59025,12 @@ Leveraging clinical, genomic, and imaging data.
     sc:url "https://github.com/hammerlab/t-cell-relation-extraction" ;
     biotools:primaryContact "Eric Czech" .
 
-<https://bio.tools/TCR_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0154,
-        edam:topic_0632,
-        edam:topic_2275,
-        edam:topic_2830 ;
-    sc:citation <https://doi.org/10.1002/PROT.25829>,
-        "pubmed:31589793" ;
-    sc:description """Geometrical characterization of T cell receptor binding modes reveals class-specific binding to maximize access to antigen.
-
-Geometrical approach to characterise the pMHC/TCR binding modes.
-
-TCR CoM : TCR complex geometrical parameters.
-
-T cell receptor structural repertoire database.
-
-tcr_mhci_pos selection [,mhc_a=None [,tcr_a = None [,tcr_b = None [,mhc_a_init=1 [,mhc_a_final=180 [,tcr_a_init=1 [,tcr_a_final=109 [, tcr_b_init=1 [,tcr_b_final=116 [,state=None ]]]]]]]]]].
-
-||| NAME (TCR) SIMILAR TO (PUB. DIFFERENT) bio.tools/tcr (tcR).
-
-||| COMMON LINK WITH (PUB. & NAME DIFFERENT) bio.tools/tcrmodel (IBBR.UMD.EDU)""" ;
-    sc:featureList edam:operation_0252,
-        edam:operation_0416,
-        edam:operation_3899 ;
-    sc:license "LGPL-3.0" ;
-    sc:name "TCR_autogenerated" ;
-    sc:url "https://tcr3d.ibbr.umd.edu/tcr_com" .
-
 <https://bio.tools/TCRex> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2886" ;
-            sc:name "Protein sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2886" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2886" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Protein sequence record" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:citation <https://doi.org/10.1101/373472> ;
@@ -73011,7 +59046,7 @@ tcr_mhci_pos selection [,mhc_a=None [,tcr_a = None [,tcr_b = None [,mhc_a_init=1
     sc:url "https://tcrex.biodatamining.be/" .
 
 <https://bio.tools/TCRpMHCmodels> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0154,
         edam:topic_0804,
@@ -73031,7 +59066,7 @@ TCRpMHCmodels predicts the three-dimensional structure of TCR-pMHC class I compl
     sc:url "http://www.cbs.dtu.dk/services/TCRpMHCmodels/" .
 
 <https://bio.tools/TCSM> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_2640 ;
     sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTZ340>,
@@ -73045,7 +59080,7 @@ TCRpMHCmodels predicts the three-dimensional structure of TCR-pMHC class I compl
     sc:url "https://github.com/lrgr/tcsm" .
 
 <https://bio.tools/TCSRWRLD> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_0659,
         edam:topic_2640 ;
@@ -73057,7 +59092,7 @@ TCRpMHCmodels predicts the three-dimensional structure of TCR-pMHC class I compl
     sc:url "http://www.cuilab.cn/" .
 
 <https://bio.tools/TCW> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0780,
         edam:topic_3170,
         edam:topic_3308 ;
@@ -73072,14 +59107,12 @@ TCRpMHCmodels predicts the three-dimensional structure of TCR-pMHC class I compl
 
 <https://bio.tools/TCoffee_API_EBI> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:name "Sequence alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1006/jmbi.2000.4042> ;
@@ -73097,19 +59130,18 @@ TCRpMHCmodels predicts the three-dimensional structure of TCR-pMHC class I compl
 
 <https://bio.tools/TCoffee_EBI> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:name "Sequence alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:author "Cedric Notredame",
-        "Web Production" ;
-    sc:citation <https://doi.org/10.1006/jmbi.2000.4042> ;
+        "Job Dispatcher" ;
+    sc:citation <https://doi.org/10.1006/jmbi.2000.4042>,
+        <https://doi.org/10.1093/nar/gkac240> ;
     sc:description "Multiple sequence alignment that combines several alignment methods." ;
     sc:featureList edam:operation_0492,
         edam:operation_2403 ;
@@ -73124,18 +59156,16 @@ TCRpMHCmodels predicts the three-dimensional structure of TCR-pMHC class I compl
         <http://www.ebi.ac.uk/about/terms-of-use> ;
     sc:softwareVersion "1" ;
     sc:url "http://www.ebi.ac.uk/Tools/msa/tcoffee/" ;
-    biotools:primaryContact "Web Production" .
+    biotools:primaryContact "Job Dispatcher Team" .
 
 <https://bio.tools/TCoffee_SIB> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:name "Sequence alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -73157,7 +59187,7 @@ TCRpMHCmodels predicts the three-dimensional structure of TCR-pMHC class I compl
     biotools:primaryContact <http://orcid.org/0000-0003-1461-0988> .
 
 <https://bio.tools/TDA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3384,
         edam:topic_3444 ;
@@ -73170,21 +59200,8 @@ TCRpMHCmodels predicts the three-dimensional structure of TCR-pMHC class I compl
     sc:name "TDA" ;
     sc:url "http://www.stat.wisc.edu/~mchung/TDA" .
 
-<https://bio.tools/TDD> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3372 ;
-    sc:citation <https://doi.org/10.7287/PEERJ.PREPRINTS.1920V3> ;
-    sc:description """Analyzing test driven development based on GitHub evidence.
-
-Testing is an integral part of the software development lifecycle, approached with varying degrees of rigor by different process models. Agile process models advocate Test Driven Development (TDD) as one among their key practices for reducing costs and improving code quality. In this paper we comparatively analyze GitHub repositories that adopt TDD against repositories that do not, in order to determine how TDD affects a number of variables related to productivity and developer satisfaction, two aspects that should be considered in a cost-benefit analysis of the paradigm. In this study, we searched through GitHub and found that a relatively small subset of Java-based repositories can be seen to adopt TDD, and an even smaller subset can be confidently identified as rigorously adhering to TDD.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'same-size', 'commits', 'sentiment', 'cost-benefit'""" ;
-    sc:name "TDD" ;
-    sc:url "https://doi.org/10.7287/PEERJ.PREPRINTS.1920V3" .
-
 <https://bio.tools/TDNAscan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0780,
         edam:topic_3168,
         edam:topic_3519 ;
@@ -73200,14 +59217,14 @@ Testing is an integral part of the software development lifecycle, approached wi
 
 <https://bio.tools/TDimpute> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3112" ;
-            sc:name "Gene expression matrix" ;
-            sc:sameAs "http://edamontology.org/data_3112" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3112" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Gene expression matrix" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Bioinformatics portal" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_3170,
@@ -73224,13 +59241,13 @@ Testing is an integral part of the software development lifecycle, approached wi
     sc:url "https://github.com/sysu-yanglab/TDimpute" .
 
 <https://bio.tools/TE-Tracker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "TE-Tracker is a program for detecting germline transposition events through whole-genome resequencing." ;
     sc:name "TE-Tracker" ;
     sc:url "http://www.genoscope.cns.fr/externe/tetracker/" .
 
 <https://bio.tools/TECH-VER> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3068,
         edam:topic_3305 ;
@@ -73252,39 +59269,16 @@ In health economic literature, checklists or best practice recommendations on mo
     sc:name "TECH-VER" ;
     sc:url "https://www.imta.nl/techver" .
 
-<https://bio.tools/TEDDY> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0625,
-        edam:topic_2885,
-        edam:topic_3379,
-        edam:topic_3517,
-        edam:topic_3518 ;
-    sc:citation <https://doi.org/10.1007/S00125-019-05028-Z>,
-        "pubmed:31728565" ;
-    sc:description """Plasma ascorbic acid and the risk of islet autoimmunity and type 1 diabetes.
-
-The Environmental Determinants of Diabetes in the Young (TEDDY).
-
-NIDDK Central Repository - The Environmental Determinants of Diabetes in the Young (TEDDY) resource description, availability, and access.
-
-Access to samples for The Environmental Determinants of Diabetes in the Young (TEDDY) is currently only available via collaboration. Please contact the parent study to ask about ancillary study opportunities.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'islet autoimmunity', 'INTERPRETATION:Higher', 'ascorbic', 'islet'""" ;
-    sc:featureList edam:operation_0484,
-        edam:operation_3196,
-        edam:operation_3661 ;
-    sc:name "TEDDY" ;
-    sc:url "https://www.niddkrepository.org/studies/teddy" .
-
 <https://bio.tools/TEF> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ] ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein structure" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0897" ;
-            sc:name "Protein property" ;
-            sc:sameAs "http://edamontology.org/data_0897" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0897" ;
+            sc:encodingFormat "http://edamontology.org/format_1957" ;
+            sc:name "Protein property" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0736 ;
     sc:citation <https://doi.org/10.1080/07391102.2018.1546230> ;
@@ -73301,7 +59295,7 @@ Access to samples for The Environmental Determinants of Diabetes in the Young (T
         <https://orcid.org/0000-0002-7373-0181> .
 
 <https://bio.tools/TEGS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0203 ;
@@ -73321,7 +59315,7 @@ Access to samples for The Environmental Determinants of Diabetes in the Young (T
     biotools:primaryContact "Wei Zhang" .
 
 <https://bio.tools/TEMPO> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0634,
@@ -73341,7 +59335,7 @@ Access to samples for The Environmental Determinants of Diabetes in the Young (T
     biotools:primaryContact "Christopher Pietras" .
 
 <https://bio.tools/TEffectR> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0659,
         edam:topic_2640,
@@ -73359,7 +59353,7 @@ Access to samples for The Environmental Determinants of Diabetes in the Young (T
     sc:url "https://github.com/karakulahg/TEffectR" .
 
 <https://bio.tools/TEs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
         edam:topic_0199 ;
@@ -73373,7 +59367,7 @@ Access to samples for The Environmental Determinants of Diabetes in the Young (T
     sc:url "https://mcstitzer.github.io/maize_TEs" .
 
 <https://bio.tools/TEsorter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0736,
         edam:topic_0749,
@@ -73388,7 +59382,7 @@ Note: do not move or hard link TEsorter.py alone to anywhere else, as it rely on
     sc:url "https://github.com/zhangrengang/TEsorter" .
 
 <https://bio.tools/TFBSshape> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0749,
         edam:topic_3169,
@@ -73409,28 +59403,8 @@ TFBSshape provides DNA shape features for transcription factor binding sites (TF
     sc:name "TFBSshape" ;
     sc:url "https://tfbsshape.usc.edu" .
 
-<https://bio.tools/TFTRs> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0114,
-        edam:topic_0121,
-        edam:topic_0204,
-        edam:topic_0749,
-        edam:topic_3407 ;
-    sc:citation <https://doi.org/10.1186/S12864-019-6075-5>,
-        "pmcid:PMC6790063",
-        "pubmed:31606035" ;
-    sc:description """conservation, variation and implications for efflux-mediated antimicrobial resistance.
-
-BACKGROUND:TetR-family transcriptional regulators (TFTRs) are DNA binding factors that regulate gene expression in bacteria. Well-studied TFTRs, such as AcrR, which regulates efflux pump expression, are usually encoded alongside target operons. Recently, it has emerged that there are many TFTRs which act as global multi-target regulators. Our classical view of TFTRs as simple, single-target regulators therefore needs to be reconsidered. As some TFTRs regulate essential processes (e.g. metabolism) or processes which are important determinants of resistance and virulence (e.g. biofilm formation and efflux gene expression) and as TFTRs are present throughout pathogenic bacteria, they may be good drug discovery targets for tackling antimicrobial resistant infections.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'TetR-family transcription factors Gram-negative bacteria'""" ;
-    sc:featureList edam:operation_3482 ;
-    sc:name "TFTRs" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31606035" .
-
 <https://bio.tools/TFmiR2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0634,
         edam:topic_0659,
@@ -73450,7 +59424,7 @@ Please switch to Chrome , Firefox , or Safari""" ;
     sc:url "http://service.bioinformatik.uni-saarland.de/tfmir2" .
 
 <https://bio.tools/TFregulomeR> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3169,
         edam:topic_3173,
@@ -73468,7 +59442,7 @@ Please switch to Chrome , Firefox , or Safari""" ;
     sc:url "https://github.com/benoukraflab/TFregulomeR" .
 
 <https://bio.tools/TGS-GapCloser> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0102,
         edam:topic_0196,
@@ -73484,7 +59458,7 @@ Please switch to Chrome , Firefox , or Safari""" ;
     sc:url "https://github.com/BGI-Qingdao/TGS-GapCloser" .
 
 <https://bio.tools/TGS-Lite> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3474,
         edam:topic_3518 ;
@@ -73497,7 +59471,7 @@ Please switch to Chrome , Firefox , or Safari""" ;
     sc:url "https://github.com/sap01/TGS-Lite-supplem/blob/master/README.md" .
 
 <https://bio.tools/THBP> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0218,
         edam:topic_3067 ;
@@ -73511,27 +59485,8 @@ Please switch to Chrome , Firefox , or Safari""" ;
     sc:name "THBP" ;
     sc:url "https://github.com/xuyanbuaa/THBP" .
 
-<https://bio.tools/THEDS> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3068,
-        edam:topic_3305,
-        edam:topic_3419,
-        edam:topic_3421 ;
-    sc:citation <https://doi.org/10.3389/FPSYT.2019.00707>,
-        "pmcid:PMC6798006",
-        "pubmed:31681029" ;
-    sc:description """Pan-London Network for Psychosis-Prevention (PNP).
-
-Tower Hamlets Early Detection Service.
-
-I used to have so many problems, I didn’t feel that life was worth much. Being with THEDS has satisfied me because I feel that I have got the help and support I want. Service User Tower Hamlets.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'Pan-London', 'PNP', 'South-London', 'CHR-P'""" ;
-    sc:featureList edam:operation_3760 ;
-    sc:name "THEDS" ;
-    sc:url "https://theds.elft.nhs.uk/" .
-
 <https://bio.tools/THESIAS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3055 ;
     sc:citation <https://doi.org/10.1038/sj.ejhg.5201238>,
@@ -73547,7 +59502,7 @@ I used to have so many problems, I didn’t feel that life was worth much. Being
     sc:url "https://github.com/daissi/thesias" .
 
 <https://bio.tools/TILLinG> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0199,
         edam:topic_0605,
@@ -73567,26 +59522,8 @@ This tool consists of TILLING populations developed in tetraploid durum wheat cv
     sc:name "TILLinG" ;
     sc:url "http://wheat-tilling.com" .
 
-<https://bio.tools/TIM-TAM> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0108,
-        edam:topic_0749,
-        edam:topic_2229,
-        edam:topic_3512 ;
-    sc:citation <https://doi.org/10.1093/NAR/GKZ1181>,
-        "pubmed:31875221" ;
-    sc:description """a conserved RNA structure that controls Tat expression and acts as a switch for HIV productive and latent infection.
-
-Tat protein is essential to fully activate HIV transcription and processing of viral mRNA, and therefore determines virus expression in productive replication and the establishment and maintenance of latent infection. Here, we used thermodynamic and structure analyses to define a highly conserved sequence-structure in tat mRNA that functions as Tat IRES modulator of tat mRNA (TIM-TAM). By impeding cap-dependent ribosome progression during authentic spliced tat mRNA translation, TIM-TAM stable structure impacts on timing and level of Tat protein hence controlling HIV production and infectivity along with promoting latency.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'Tat IRES modulator tat mRNA'""" ;
-    sc:featureList edam:operation_3454 ;
-    sc:name "TIM-TAM" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31875221" .
-
 <https://bio.tools/TITAN> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0176,
         edam:topic_0821,
         edam:topic_3314 ;
@@ -73601,7 +59538,7 @@ TITAN (elecTric fIeld generaTion And maNipulation) is being developed by:""" ;
     sc:url "https://titan-code.github.io" .
 
 <https://bio.tools/TITINdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0593,
@@ -73623,7 +59560,7 @@ TITAN (elecTric fIeld generaTion And maNipulation) is being developed by:""" ;
     biotools:primaryContact "Franca Fraternali" .
 
 <https://bio.tools/TKR> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3315,
         edam:topic_3379,
         edam:topic_3421 ;
@@ -73637,7 +59574,7 @@ TITAN (elecTric fIeld generaTion And maNipulation) is being developed by:""" ;
     sc:url "http://medicalequipoise.com/tkrclinician" .
 
 <https://bio.tools/TM-IMC> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0218,
         edam:topic_3300 ;
@@ -73652,7 +59589,7 @@ TITAN (elecTric fIeld generaTion And maNipulation) is being developed by:""" ;
     sc:url "https://zhanglab.ccmb.med.umich.edu/TM-IMC" .
 
 <https://bio.tools/TM3_seq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_3170,
         edam:topic_3308,
@@ -73667,20 +59604,8 @@ TITAN (elecTric fIeld generaTion And maNipulation) is being developed by:""" ;
     sc:name "TM3 seq" ;
     sc:url "https://lufpa.github.io/TM3Seq-Pipeline/" .
 
-<https://bio.tools/TMAP_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_2258,
-        edam:topic_2640,
-        edam:topic_3369 ;
-    sc:citation <https://doi.org/10.26434/CHEMRXIV.9698861.V1> ;
-    sc:description "> NAME EQUAL TO (PUB. DIFFERENT) bio.tools/tmap | > COMMON LINK WITH (PUB. & NAME DIFFERENT) bio.tools/fun (GDB.TOOLS) | > CORRECT NAME OF TOOL COULD ALSO BE 'TMAP available Python' | Visualization of Very Large High-Dimensional Data Sets as Minimum Spanning Trees | Visualize big high-dimensional data | tmap is a very fast visualization library for large, high-dimensional data sets | We suggest using faerun to plot the data layed out by tmap. But you can of course also use matplotlib (which might be to slow for large data sets and doesn't provide interactive features). Following, an example plot produced with tmap and matplotlib" ;
-    sc:featureList edam:operation_2422,
-        edam:operation_2942,
-        edam:operation_3891 ;
-    sc:name "TMAP_autogenerated" ;
-    sc:url "http://tmap.gdb.tools" .
-
 <https://bio.tools/TMAT> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3174,
         edam:topic_3293,
         edam:topic_3697 ;
@@ -73694,7 +59619,7 @@ TITAN (elecTric fIeld generaTion And maNipulation) is being developed by:""" ;
     sc:url "http://healthstat.snu.ac.kr/software/tmat" .
 
 <https://bio.tools/TMB> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3125,
         edam:topic_3176,
         edam:topic_3368 ;
@@ -73707,28 +59632,8 @@ TITAN (elecTric fIeld generaTion And maNipulation) is being developed by:""" ;
     sc:name "TMB" ;
     sc:url "http://dna.engr.latech.edu/~tmbshare/" .
 
-<https://bio.tools/TMCG> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3384,
-        edam:topic_3404,
-        edam:topic_3416,
-        edam:topic_3474,
-        edam:topic_3577 ;
-    sc:citation <https://doi.org/10.1101/826057> ;
-    sc:description """Using artificial intelligence on dermatology conditions in Uganda.
-
-Creating Innovative Digital Health Solutions to Improve Healthcare for All.
-
-17,440 Total calls through our Call Centre in 2018.
-
-14,961 Whatsapp Conversations in 2018.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'Using artificial intelligence dermatology conditions Uganda', 'skin', 'dermatological', 'dermatology'""" ;
-    sc:featureList edam:operation_3283 ;
-    sc:name "TMCG" ;
-    sc:url "https://tmcg.co.ug" .
-
 <https://bio.tools/TMPfold> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0130,
         edam:topic_0199,
         edam:topic_0602,
@@ -73743,28 +59648,8 @@ Creating Innovative Digital Health Solutions to Improve Healthcare for All.
     sc:name "TMPfold" ;
     sc:url "https://opm.phar.umich.edu/tmpfold_server" .
 
-<https://bio.tools/TNFR1> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0176,
-        edam:topic_0602,
-        edam:topic_0736,
-        edam:topic_3382 ;
-    sc:citation <https://doi.org/10.1002/PROT.25854>,
-        "pubmed:31710744" ;
-    sc:description """Computational simulations of TNF receptor oligomerization on plasma membrane.
-
-The interactions between tumor necrosis factors (TNFs) and their corresponding receptors (TNFRs) play a pivotal role in inflammatory responses. Upon ligand binding, TNFR receptors were found to form oligomers on cell surfaces. However, the underlying mechanism of oligomerization is not fully understood. In order to tackle this problem, molecular dynamics (MD) simulations have been applied to the complex between TNF receptor-1 (TNFR1) and its ligand TNF-α as a specific test system. The simulations on both all-atom (AA) and coarse-grained (CG) levels achieved the similar results that the extracellular domains of TNFR1 can undergo large fluctuations on plasma membrane, while the dynamics of TNFα-TNFR1 complex is much more constrained.
-
-||| HOMEPAGE BROKEN!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'TNF', 'TNFa-TNFR1'""" ;
-    sc:featureList edam:operation_0244,
-        edam:operation_2476,
-        edam:operation_3436 ;
-    sc:name "TNFR1" ;
-    sc:url "http://www.cbligand.org/downloads/TNF_TNFR1.pdb" .
-
 <https://bio.tools/TOAST> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3295,
         edam:topic_3518 ;
@@ -73780,7 +59665,7 @@ The interactions between tumor necrosis factors (TNFs) and their corresponding r
     sc:url "https://bioconductor.org/packages/TOAST" .
 
 <https://bio.tools/TOBIAS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0749,
         edam:topic_3169,
@@ -73797,7 +59682,7 @@ The interactions between tumor necrosis factors (TNFs) and their corresponding r
     sc:url "https://github.com/loosolab/TOBIAS" .
 
 <https://bio.tools/TOFF> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0625,
         edam:topic_0749,
@@ -73817,7 +59702,7 @@ TOFF (i.e. Traits OF Fish) is a curated database focusing on functional trait in
     sc:url "http://toff-project.univ-lorraine.fr" .
 
 <https://bio.tools/TOPAS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3318,
         edam:topic_3384,
@@ -73837,7 +59722,7 @@ TOFF (i.e. Traits OF Fish) is a curated database focusing on functional trait in
     biotools:primaryContact "Joseph Perl" .
 
 <https://bio.tools/TOPAS-nBio> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3314,
@@ -73854,18 +59739,8 @@ TOFF (i.e. Traits OF Fish) is a curated database focusing on functional trait in
     biotools:primaryContact "Joost Verburg",
         "Thomas Bortfeld" .
 
-<https://bio.tools/TOPAS_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_2640,
-        edam:topic_3179,
-        edam:topic_3315 ;
-    sc:citation <https://doi.org/10.1016/J.EJMP.2019.06.016>,
-        "pubmed:31515016" ;
-    sc:description "> LOW CONFIDENCE! | > HOMEPAGE MISSING! | > NAME EQUAL TO (PUB. DIFFERENT) bio.tools/TOPAS | > CORRECT NAME OF TOOL COULD ALSO BE 'Geant4', 'TOPAS Geant4', 'Geant4 TOPAS', 'Reconfigurable' | Monte Carlo Processing on a Chip (MCoaC)-preliminary experiments toward the realization of optimal-hardware for TOPAS/Geant4 to drive discovery | Amongst the scientific frameworks powered by the Monte Carlo (MC) toolkit Geant4 (Agostinelli et al., 2003), the TOPAS (Tool for Particle Simulation) (Perl et al., 2012) is one. TOPAS focuses on providing ease of use, and has significant implementation in the radiation oncology space at present. TOPAS functionality extends across the full capacity of Geant4, is freely available to non-profit users, and is being extended into radiobiology via TOPAS-nBIO (Ramos-Mendez et al., 2018)" ;
-    sc:name "TOPAS_autogenerated" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31515016" .
-
 <https://bio.tools/TOXcms> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0202,
         edam:topic_0209,
@@ -73883,7 +59758,7 @@ Job opportunities are available""" ;
     sc:url "http://pattilab.wustl.edu/software/toxcms" .
 
 <https://bio.tools/TP-DB> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -73904,7 +59779,7 @@ Job opportunities are available""" ;
         "Lee-Wei Yang" .
 
 <https://bio.tools/TPD> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3050 ;
     sc:citation <https://doi.org/10.1002/ECY.2876>,
@@ -73915,7 +59790,7 @@ Job opportunities are available""" ;
     sc:url "https://CRAN.R-project.org/package=TPD" .
 
 <https://bio.tools/TPES> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_3168 ;
@@ -73934,7 +59809,7 @@ Job opportunities are available""" ;
         "Francesca Demichelis" .
 
 <https://bio.tools/TPMCalculator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3320,
@@ -73958,7 +59833,7 @@ Job opportunities are available""" ;
         "Roberto Vera Alvarez" .
 
 <https://bio.tools/TPOT> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0769,
@@ -73985,7 +59860,7 @@ Job opportunities are available""" ;
     sc:url "https://github.com/EpistasisLab/tpot" .
 
 <https://bio.tools/TPP_SPC> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application",
         "Suite" ;
@@ -74000,7 +59875,7 @@ Job opportunities are available""" ;
     sc:url "http://tools.proteomecenter.org/software.php" .
 
 <https://bio.tools/TRANSCUP> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3170,
         edam:topic_3308 ;
@@ -74013,7 +59888,7 @@ Job opportunities are available""" ;
     sc:url "https://github.com/plsysu/TRANSCUP" .
 
 <https://bio.tools/TRANSNAP> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_0780,
         edam:topic_3170,
@@ -74031,14 +59906,14 @@ Job opportunities are available""" ;
 
 <https://bio.tools/TRAPeS> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1383" ;
-            sc:name "Sequence alignment (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1383" ] ;
+            sc:additionalType "http://edamontology.org/data_1383" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Sequence alignment (nucleic acid)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2955" ;
-            sc:name "Sequence report" ;
-            sc:sameAs "http://edamontology.org/data_2955" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2955" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Sequence report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_2830 ;
@@ -74054,7 +59929,7 @@ Job opportunities are available""" ;
     biotools:primaryContact "Shaked Afik" .
 
 <https://bio.tools/TRAX> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3314,
         edam:topic_3393,
         edam:topic_3855 ;
@@ -74074,7 +59949,7 @@ Monitoring Air Quality Along UTA TRAX Lines.""" ;
     sc:url "http://utahaq.chpc.utah.edu/aq/cgi-bin/mobile_data.cgi" .
 
 <https://bio.tools/TRC> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3172,
         edam:topic_3520 ;
@@ -74093,38 +59968,28 @@ Monitoring Air Quality Along UTA TRAX Lines.""" ;
     sc:url "https://sites.google.com/site/dhyeonyu/software" ;
     biotools:primaryContact "Donghyeon Yu" .
 
-<https://bio.tools/TRIDENT-2> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0654,
-        edam:topic_3517 ;
-    sc:citation <https://doi.org/10.1016/J.AJHG.2019.10.005>,
-        "pmcid:PMC6904791",
-        "pubmed:31708118" ;
-    sc:description """National Implementation of Genome-wide Non-invasive Prenatal Testing as a First-Tier Screening Test in the Netherlands.
-
-The Netherlands launched a nationwide implementation study on non-invasive prenatal testing (NIPT) as a first-tier test offered to all pregnant women. This started on April 1, 2017 as the TRIDENT-2 study, licensed by the Dutch Ministry of Health. In the first year, NIPT was performed in 73,239 pregnancies (42% of all pregnancies), 7,239 (4%) chose first-trimester combined testing, and 54% did not participate. The number of trisomies 21 (239, 0.33%), 18 (49, 0.07%), and 13 (55, 0.08%) found in this study is comparable to earlier studies, but the Positive Predictive Values (PPV)-96% for trisomy 21, 98% for trisomy 18, and 53% for trisomy 13-were higher than expected. Findings other than trisomy 21, 18, or 13 were reported on request of the pregnant women; 78% of women chose to have these reported.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'NIPT'""" ;
-    sc:name "TRIDENT-2" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31708118" .
-
 <https://bio.tools/TRIP_-_T-cell_Receptor_Immunoglobulin_Profiler> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_2830 ;
     sc:citation <https://doi.org/10.1186/s12859-020-03669-1>,
         "pmcid:PMC7525938",
         "pubmed:32993478" ;
-    sc:description "Antigen receptors are characterized by an extreme diversity of specificities, which poses major computational and analytical challenges, particularly in the era of high-throughput immunoprofiling by next generation sequencing (NGS). The antigen receptor gene profiler tool (TRIP) offers the opportunity for an in-depth analysis based on the processing of the output files of the IMGT/HighV-Quest tool, a standard in NGS immunoprofiling, through a number of interoperable modules. These  provide  detailed  information about antigen receptor gene rearrangements, including variable (V), diversity (D) and joining (J) gene usage, CDR3 amino acid and nucleotide composition and clonality of both T cell receptors (TR) and B cell receptor immunoglobulins (BcR IG), and characteristics of the somatic hypermutation within the BcR IG genes. TRIP is a web application implemented in R shiny." ;
+    sc:description "T-cell Receptor/Immunoglobulin Profiler (TRIP)" ;
     sc:featureList edam:operation_2403 ;
     sc:isAccessibleForFree true ;
     sc:license "MIT" ;
-    sc:name "TRIP - T-cell Receptor Immunoglobulin Profiler" ;
+    sc:name "tripr" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://www.bioconductor.org/packages/devel/bioc/manuals/tripr/man/tripr.pdf> ;
     sc:softwareVersion "1.0" ;
     sc:url "https://github.com/BiodataAnalysisGroup/TRIP" ;
     biotools:primaryContact <https://orcid.org/0000-0002-0222-4273> .
 
 <https://bio.tools/TRITEX> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0780,
@@ -74145,7 +60010,7 @@ The Netherlands launched a nationwide implementation study on non-invasive prena
     biotools:primaryContact "Martin Mascher" .
 
 <https://bio.tools/TRI_tool> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0203,
@@ -74166,7 +60031,7 @@ The Netherlands launched a nationwide implementation study on non-invasive prena
         "Vladimir Perovic" .
 
 <https://bio.tools/TROVE> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2640 ;
@@ -74188,7 +60053,7 @@ The Netherlands launched a nationwide implementation study on non-invasive prena
         "Sourav S. Bhowmick" .
 
 <https://bio.tools/TRamWAy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_2229,
         edam:topic_3047 ;
@@ -74202,50 +60067,8 @@ TRamWAy helps analyzing single molecule dynamics. It infers the diffusivity, dri
     sc:name "TRamWAy" ;
     sc:url "http://github.com/DecBayComp/TRamWAy" .
 
-<https://bio.tools/TRiP_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0203,
-        edam:topic_0621,
-        edam:topic_3512,
-        edam:topic_3523,
-        edam:topic_3912 ;
-    sc:citation <https://doi.org/10.1101/852376> ;
-    sc:description """Large-scale transgenic Drosophila resource collections for loss- and gain-of-function studies.
-
-DRSC/TRiP Functional Genomics Resources.
-
-To date the TRiP has generated over 12,000 Drosophila RNAi stocks, and developed efficient vectors for RNAi that work in all tissues. For a detailed description of the the TRiP in vivo RNAi approach click here.
-
-TRiP vectors are distributed by the Drosophila Genome Resource Center (Bloomington, IL, USA).
-
-||| NAME (TRiP) SIMILAR TO (PUB. DIFFERENT) bio.tools/trip (TRIP).
-
-||| COMMON LINK WITH (PUB. & NAME DIFFERENT) bio.tools/bioplex_2.0 (HMS.HARVARD.EDU), bio.tools/bionumbers (HMS.HARVARD.EDU), bio.tools/netdecoder (HMS.HARVARD.EDU).
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'RNAi', 'fly', 'TRiP-KO', 'TRiP-OE'""" ;
-    sc:featureList edam:operation_0308 ;
-    sc:name "TRiP_autogenerated" ;
-    sc:url "https://fgr.hms.harvard.edu/trip-in-vivo-fly-rnai" .
-
-<https://bio.tools/TS-GOEA> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0089,
-        edam:topic_0203,
-        edam:topic_0634 ;
-    sc:citation <https://doi.org/10.1186/S12859-019-3125-6>,
-        "pmcid:PMC6876092",
-        "pubmed:31760951" ;
-    sc:description """a web tool for tissue-specific gene set enrichment analysis based on gene ontology.
-
-BACKGROUND:The Gene Ontology (GO) knowledgebase is the world's largest source of information on the functions of genes. Since the beginning of GO project, various tools have been developed to perform GO enrichment analysis experiments. GO enrichment analysis has become a commonly used method of gene function analysis. Existing GO enrichment analysis tools do not consider tissue-specific information, although this information is very important to current research. RESULTS:In this paper, we built an easy-to-use web tool called TS-GOEA that allows users to easily perform experiments based on tissue-specific GO enrichment analysis. TS-GOEA uses strict threshold statistical method for GO enrichment analysis, and provides statistical tests to improve the reliability of the analysis results.
-
-||| HOMEPAGE MISSING!""" ;
-    sc:featureList edam:operation_2238,
-        edam:operation_2436,
-        edam:operation_3672 ;
-    sc:name "TS-GOEA" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31760951" .
-
 <https://bio.tools/TSDD> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0736,
@@ -74263,7 +60086,7 @@ BACKGROUND:The Gene Ontology (GO) knowledgebase is the world's largest source of
     biotools:primaryContact "Kenneth Watanabe" .
 
 <https://bio.tools/TSEA-DB> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0625,
         edam:topic_0634,
@@ -74291,7 +60114,7 @@ The Multi-Trait Collection (MTC) traits were previously reported in the work by
     sc:url "https://bioinfo.uth.edu/TSEADB/" .
 
 <https://bio.tools/TSUNAMI> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0203,
         edam:topic_0602,
@@ -74311,7 +60134,7 @@ Gene co-expression network (GCN) mining aims to mine gene modules with highly co
     sc:url "https://github.com/huangzhii/TSUNAMI/" .
 
 <https://bio.tools/TTAgP> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0804,
         edam:topic_2640 ;
@@ -74323,61 +60146,8 @@ Gene co-expression network (GCN) mining aims to mine gene modules with highly co
     sc:name "TTAgP" ;
     sc:url "https://github.com/reumandc/tsvr" .
 
-<https://bio.tools/TTD_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0154,
-        edam:topic_0202,
-        edam:topic_0659,
-        edam:topic_3336,
-        edam:topic_3379 ;
-    sc:citation <https://doi.org/10.1093/NAR/GKZ981>,
-        "pubmed:31691823" ;
-    sc:description """enriched resource for facilitating research and early development of targeted therapeutics.
-
-Therapeutic Target Database (TTD).
-
-Examples: EGFR ; Vascular endothelial growth factor ; Peramivir ; Renal cell carcinoma ...
-
-Examples: EGFR; Vascular endothelial growth factor; Peramivir; Renal cell carcinoma ...
-
-Examples: Cabozantinib ; Ebola virus infection ; Oseltamivir ...
-
-Examples: Cabozantinib; Ebola virus infection; Oseltamivir ...
-
-Statistics of Therapeutic Target Database (TTD) Update 2020.
-
-||| NAME EQUAL TO (PUB. DIFFERENT) bio.tools/ttd.
-
-||| COMMON LINK WITH (PUB. & NAME DIFFERENT) bio.tools/VARIDT (IDRBLAB.NET).
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'Therapeutic target database 2020'""" ;
-    sc:featureList edam:operation_0463,
-        edam:operation_2421,
-        edam:operation_2422 ;
-    sc:name "TTD_autogenerated" ;
-    sc:url "http://bidd.nus.edu.sg/group/ttd/ttd.asp" .
-
-<https://bio.tools/TTT> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0611,
-        edam:topic_3304,
-        edam:topic_3379 ;
-    sc:citation <https://doi.org/10.1101/779546> ;
-    sc:description "> VERY_LOW CONFIDENCE! | > CORRECT NAME OF TOOL COULD ALSO BE 'EEG', 'Python-based', 'Topography-based', 'ERPs' | Revealing the Temporal Dynamics in Non-invasive Electrophysiological recordings with Topography-based Analyses | Topography-based Temporal-analysis Toolbox (EEG) | Topography-based Temporal-analysis Toolbox | The preprint can be found in Biorxiv" ;
-    sc:featureList edam:operation_3891 ;
-    sc:name "TTT" ;
-    sc:url "https://github.com/TTT-EEG/TTT-EEG" .
-
-<https://bio.tools/TTTS-GPS> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3334,
-        edam:topic_3421,
-        edam:topic_3444 ;
-    sc:citation <https://doi.org/10.1016/J.CMPB.2019.104993>,
-        "pubmed:31443866" ;
-    sc:description "> MEDIUM CONFIDENCE! | > HOMEPAGE MISSING! | > CORRECT NAME OF TOOL COULD ALSO BE 'TTTS', 'TTTS planner', 'twin-to-twin', 'TTTS surgeries' | Patient-specific preoperative planning and simulation platform for twin-to-twin transfusion syndrome fetal surgery | Twin-to-twin transfusion syndrome (TTTS) is a serious condition that may occur in pregnancies when two or more fetuses share the same placenta. It is characterized by abnormal vascular connections in the placenta that cause blood to flow unevenly between the babies. If left untreated, perinatal mortality occurs in 90% of cases, whilst neurological injuries are still present in TTTS survivors. Minimally invasive fetoscopic laser surgery is the standard and optimal treatment for this condition, but is technically challenging and can lead to complications. Acquiring and maintaining the required surgical skills need consistent practice, and a steep learning curve. An accurate preoperative planning is thus vital for complex TTTS cases" ;
-    sc:name "TTTS-GPS" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31443866" .
-
 <https://bio.tools/TWOMBLI> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_0769,
         edam:topic_3068 ;
@@ -74394,7 +60164,7 @@ Your browser does not support the video tag""" ;
     sc:url "https://github.com/wershofe/TWOMBLI" .
 
 <https://bio.tools/TXG-MAPr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:citation <https://doi.org/10.1007/s00204-021-03141-w> ;
     sc:description "In the TXG-MAPr, users can analyze dose- and time-response curves, compound correlation plots and functional annotation of the WGCNA modules to derive mechanistic information of the toxicity. In addition, we included the prediction of transcription factor activities, as well as physical interactions between downstream proteins encoded by the transcriptome, which might be useful in analyzing the perturbations triggered by exposure with toxic compounds. Users can investigate module perturbation of the TG-GATEs compounds by looking at the module eigengene scores (EGS)" ;
     sc:featureList edam:operation_2945 ;
@@ -74402,7 +60172,7 @@ Your browser does not support the video tag""" ;
     sc:url "https://txg-mapr.eu/" .
 
 <https://bio.tools/TYGRESS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0611,
         edam:topic_2275,
         edam:topic_3385,
@@ -74422,7 +60192,7 @@ Back to UT Southwestern Back to UTSW Labs""" ;
     sc:url "https://www.utsouthwestern.edu/labs/nicastro/tygress/" .
 
 <https://bio.tools/TYGS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0084,
@@ -74445,30 +60215,8 @@ Back to UT Southwestern Back to UTSW Labs""" ;
     sc:url "https://tygs.dsmz.de" ;
     biotools:primaryContact <https://orcid.org/0000-0001-9105-9814> .
 
-<https://bio.tools/TYMS_rs2853741_MTHFR_rs3737964_MTHFR> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0208,
-        edam:topic_0602,
-        edam:topic_2640,
-        edam:topic_2885,
-        edam:topic_3407 ;
-    sc:citation <https://doi.org/10.1186/S40880-019-0399-Z>,
-        "pmcid:PMC6787984",
-        "pubmed:31601265" ;
-    sc:description """Polymorphisms of MTHFR and TYMS predict capecitabine-induced hand-foot syndrome in patients with metastatic breast cancer.
-
-BACKGROUND:Breast cancer is a global problem, and a large number of new cases are diagnosed every year. Capecitabine is effective in patients with metastatic breast cancer (MBC). Hand-foot syndrome (HFS) is a common adverse effect of capecitabine. In this study, we investigated the association between single nucleotide polymorphisms (SNPs) in genes involved in capecitabine metabolism pathways and capecitabine-induced HFS in Chinese patients with MBC to identify some predictive genetic biomarkers. METHODS:We selected 3 genes involved in capecitabine metabolism and screened genetic variants in these target genes.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'rs2853741 MTHFR rs3737964 MTHFR rs4846048', 'TYMS rs2606241 TYMS rs2853741 MTHFR', 'rs2606241 TYMS rs2853741 MTHFR rs3737964', 'MTHFR rs3737964 MTHFR rs4846048'""" ;
-    sc:featureList edam:operation_0308,
-        edam:operation_3196,
-        edam:operation_3439 ;
-    sc:name "TYMS rs2853741 MTHFR rs3737964 MTHFR" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31601265" .
-
 <https://bio.tools/TZMD> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0621,
         edam:topic_0637,
@@ -74487,7 +60235,7 @@ The "tranucleotide-derived Z-value Manhattan Distance” (TZMD) approach profile
     sc:url "https://github.com/Yizhuangzhou/TZMD" .
 
 <https://bio.tools/TaBSAP> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description """Targeted Bisulfite Sequencing Analysis Pipeline
 A pipeline to analyze the data obtained from targeted bisulfite sequencing through the ion-torrent platform.
 
@@ -74511,7 +60259,7 @@ TaBSAP is a pipeline to map bisulfite treated sequencing reads to a genome of in
     sc:url "https://github.com/pradyumnasagar/TaBSAP" .
 
 <https://bio.tools/TaF> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0621,
@@ -74532,7 +60280,7 @@ TaBSAP is a pipeline to map bisulfite treated sequencing reads to a genome of in
     biotools:primaryContact "Theragen Etex Bio Institute" .
 
 <https://bio.tools/TabSINT> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3063,
         edam:topic_3489 ;
     sc:citation <https://doi.org/10.1080/14992027.2019.1698776>,
@@ -74546,7 +60294,7 @@ Open source platform for hearing assessments,and general purpose questionnaires"
     sc:url "http://tabsint.org" .
 
 <https://bio.tools/Taba> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0154,
         edam:topic_3474 ;
@@ -74559,7 +60307,7 @@ Open source platform for hearing assessments,and general purpose questionnaires"
     sc:url "https://github.com/azevedolab/taba" .
 
 <https://bio.tools/TagGraph> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0601,
@@ -74574,22 +60322,8 @@ Open source platform for hearing assessments,and general purpose questionnaires"
     sc:name "TagGraph" ;
     sc:url "http://kronos.stanford.edu/TAG_GRAPH/" .
 
-<https://bio.tools/TalentTiles> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0108,
-        edam:topic_3068 ;
-    sc:citation <https://doi.org/10.1002/CAD.20317>,
-        "pubmed:31696634" ;
-    sc:description """A New Descriptive Talent Identification Instrument Based on Teachers' Ratings.
-
-Talent identification based on multiple criteria is a common way of considering students for gifted education services. As part of a nationwide talent identification program led by UNK (New Generation Centre, Hungary of Talents Program, 2016-2020), we developed an online rating tool with which teachers could indicate the talent areas of their 5th grade students. Through several iterations-involving the translation, application, and analysis of Renzulli's Scales for Rating the Behavioral Characteristics of Superior Students questionnaire and a custom-made normative questionnaire-we developed a matrix-style competency rating instrument called TalentTiles. The primary aim of the instrument is to collect more realistic and reliable teacher-ratings on students.
-
-||| HOMEPAGE MISSING!""" ;
-    sc:featureList edam:operation_3435 ;
-    sc:name "TalentTiles" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31696634" .
-
 <https://bio.tools/TarHunter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0659,
@@ -74607,7 +60341,7 @@ Talent identification based on multiple criteria is a common way of considering
     biotools:primaryContact "Xuan Ma" .
 
 <https://bio.tools/TargetScanHuman> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0659,
         edam:topic_0749,
@@ -74631,7 +60365,7 @@ TargetScan predicts biological targets of miRNAs by searching for the presence o
     sc:url "http://www.targetscan.org/" .
 
 <https://bio.tools/Target_Gene_Notebook> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0625,
         edam:topic_3336 ;
@@ -74643,7 +60377,7 @@ TargetScan predicts biological targets of miRNAs by searching for the presence o
     sc:url "http://tgn.broadinstitute.org/" .
 
 <https://bio.tools/TasselNetv2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0780,
         edam:topic_3382,
@@ -74660,28 +60394,8 @@ This is the repository for TasselNetv2, presented in:""" ;
     sc:name "TasselNetv2" ;
     sc:url "https://tinyurl.com/TasselNetv2" .
 
-<https://bio.tools/Tautomer_Database> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0593,
-        edam:topic_2258,
-        edam:topic_3068 ;
-    sc:citation <https://doi.org/10.26434/CHEMRXIV.10790369.V1> ;
-    sc:description """A Comprehensive Resource for Tautomerism Analyses.
-
-Tautomer Structures Extracted from Experimental Literature.
-
-Release 1 : Release 2 : Release 3 :.
-
-A spreadsheet (Tautomer_database_release_3.xlsx file) with 5,977 structures extracted from experimental literature representing 2,819 cases of tautomeric tuples (mostly tautomer pairs but also a few triples and higher-order tuples). All structures have been annotated with experimental conditions, structure identifiers, bibliographic references and types of tautomerism involved. The structures and experiment-related data were extracted from a total of 171 publications, including reviews reporting on multiple primary studies.
-
-2,819 Tautomeric Tuples Comprising 5,977 Structures.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'tautomeric entry', 'Tautomerism Analyses'""" ;
-    sc:featureList edam:operation_0335 ;
-    sc:name "Tautomer Database" ;
-    sc:url "https://cactus.nci.nih.gov/download/tautomer/" .
-
 <https://bio.tools/TaxIt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
         edam:topic_0154,
@@ -74696,7 +60410,7 @@ A spreadsheet (Tautomer_database_release_3.xlsx file) with 5,977 structures extr
     sc:url "https://gitlab.com/rki_bioinformatics/TaxIt" .
 
 <https://bio.tools/TcellSubC> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
         edam:topic_0140,
@@ -74715,7 +60429,7 @@ This is a  curated an in-depth subcellular proteomic map of primary human CD4+ T
     sc:url "https://tcellatlas.kaust.edu.sa/" .
 
 <https://bio.tools/TeXP> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3170,
         edam:topic_3519 ;
@@ -74731,7 +60445,7 @@ This is a  curated an in-depth subcellular proteomic map of primary human CD4+ T
     sc:url "https://github.com/gersteinlab/texp" .
 
 <https://bio.tools/TeachOpenCADD-KNIME> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0209,
         edam:topic_0769,
         edam:topic_2258,
@@ -74746,32 +60460,14 @@ This is a  curated an in-depth subcellular proteomic map of primary human CD4+ T
     sc:name "TeachOpenCADD-KNIME" ;
     sc:url "https://hub.knime.com/volkamerlab/space/TeachOpenCADD" .
 
-<https://bio.tools/TeleECHO> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0634,
-        edam:topic_3063,
-        edam:topic_3305 ;
-    sc:citation <https://doi.org/10.1007/S11914-019-00543-9>,
-        "pubmed:31713181" ;
-    sc:description """a Force Multiplier to Improve the Care of Skeletal Diseases in Underserved Communities.
-
-Project ECHO is committed to addressing the needs.
-
-of the most vulnerable populations by equipping communities with.
-
-the right knowledge, at the right place, at the right time.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'Bone Health TeleECHO', 'ECHO' (bio.tools/echo)""" ;
-    sc:name "TeleECHO" ;
-    sc:url "https://echo.unm.edu/" .
-
 <https://bio.tools/Telescope> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "Telescope is an open-source web application that tracks the progress of jobs submitted to remote servers using Sun Grid Engine (SGE) on-demand scheduling system. It allows remote scheduling of pre-defined pipelines, as well as re-scheduling queued jobs. Moreover, output files are rendered in HTML in real time, allowing the use of markdown and rich-text features. Telescope does not assume anything from the remote server, except for SSH connection. The connection is established using SSH key pairs that are stored after encrypted." ;
     sc:name "Telescope" ;
     sc:url "https://github.com/Mangul-Lab-USC/telescope" .
 
 <https://bio.tools/Telescope-expression> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
         edam:topic_3170,
@@ -74794,50 +60490,8 @@ All scripts needed to examine the sensitivity and biases of computational approa
     sc:softwareHelp <https://github.com/mlbendall/telescope_demo> ;
     sc:url "https://github.com/mlbendall/telescope" .
 
-<https://bio.tools/Telescope_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0102,
-        edam:topic_0196,
-        edam:topic_3170,
-        edam:topic_3308,
-        edam:topic_3512 ;
-    sc:citation <https://doi.org/10.1371/JOURNAL.PCBI.1006453>,
-        "pmcid:PMC6786656",
-        "pubmed:31568525" ;
-    sc:description """Characterization of the retrotranscriptome by accurate estimation of transposable element expression.
-
-Quantification of transposable element expression using RNA-seq.
-
-Statistical Performance of TE Quantification Methods.
-
-All scripts needed to examine the sensitivity and biases of computational approaches for quantifying TE expression: 1) unique counts, 2) best counts, 3) RepEnrich, 4) TEtranscripts, 5) RSEM, 6) SalmonTE, and 7) Telescope.
-
-Demonstration of Telescope's single-locus capabilites.
-
-Transposable element annotations used by Telescope.
-
-Single locus resolution of Transposable ELEment expression.
-
-Install Telescope using bioconda:.
-
-ENCODE data is obtained from the Sequence Read Archive. The data analyzed comes from two projects:.
-
-Computational Biology Institute at George Washington University.
-
-A BAM file (alignment.bam) and annotation (annotation.gtf) are included in the telescope package for testing.
-
-||| NAME EQUAL TO (PUB. DIFFERENT) bio.tools/Telescope""" ;
-    sc:featureList edam:operation_2495,
-        edam:operation_3192,
-        edam:operation_3198,
-        edam:operation_3800,
-        edam:operation_3891 ;
-    sc:license "MIT" ;
-    sc:name "Telescope_autogenerated" ;
-    sc:softwareHelp <https://github.com/mlbendall/telescope_demo> ;
-    sc:url "https://github.com/mlbendall/telescope" .
-
 <https://bio.tools/TelomereHunter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3673,
@@ -74857,39 +60511,8 @@ A BAM file (alignment.bam) and annotation (annotation.gtf) are included in the t
     sc:url "https://www.dkfz.de/en/applied-bioinformatics/telomerehunter/telomerehunter.html" ;
     biotools:primaryContact "Lina Sieverling" .
 
-<https://bio.tools/Temporal_trends_public_mass_shootings> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3068 ;
-    sc:citation <https://doi.org/10.1101/2019.12.12.19014738> ;
-    sc:description """high-capacity magazines significantly increase fatality counts, and are becoming more prevalent.
-
-Background: There has been disagreement in the literature regarding whether public mass shootings are becoming more frequent, or more deadly, and whether high-capacity magazine (HCM) weaponry is associated with increased fatalities. Objective: We examined the 85 non-felony- and non-gang-related mass shootings with at least four people shot and killed that occurred in public places between 1995 to 2018 to examine the frequency and deadliness of public mass shootings, as well as the role of HCM weaponry in fatalities. Findings: The per-capita rate of public mass shootings with at least four people killed has not significantly increased since 1995 (Negative Binomial linear regression p=0.20), but public mass shootings with at least six people killed have been increasing by 6.9% per year (p=0.01).
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'mass shootings'""" ;
-    sc:featureList edam:operation_3659,
-        edam:operation_3799 ;
-    sc:name "Temporal trends public mass shootings" ;
-    sc:url "https://mass-shooting-analytics.shinyapps.io/mass_shootings/" .
-
-<https://bio.tools/TensorFlow_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0634,
-        edam:topic_3360,
-        edam:topic_3474 ;
-    sc:citation <https://doi.org/10.1186/S12911-019-0974-X>,
-        "pmcid:PMC6873409",
-        "pubmed:31752864" ;
-    sc:description """Prediction of cognitive impairment via deep learning trained with multi-center neuropsychological test data.
-
-An end-to-end open source machine learning platform.
-
-Announcing the TensorFlow Dev Summit 2020 Learn more.
-
-TensorFlow is an end-to-end open source platform for machine learning. It has a comprehensive, flexible ecosystem of tools, libraries and community resources that lets researchers push the state-of-the-art in ML and developers easily build and deploy ML powered applications""" ;
-    sc:featureList edam:operation_3435 ;
-    sc:name "TensorFlow_autogenerated" ;
-    sc:url "https://www.tensorflow.org" .
-
 <https://bio.tools/TeraPCA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2885,
@@ -74907,7 +60530,7 @@ TensorFlow is an end-to-end open source platform for machine learning. It has a
     sc:url "https://github.com/aritra90/TeraPCA" .
 
 <https://bio.tools/Terminome-seq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0659,
         edam:topic_0780,
@@ -74927,7 +60550,7 @@ The preprint of the manuscript is 2019_Terminome-Seq.pdf or it can be downloaded
     sc:url "https://github.com/BenoitCastandet/Terminome_Seq" .
 
 <https://bio.tools/Terra> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_3316,
         edam:topic_3810 ;
@@ -74938,25 +60561,8 @@ The preprint of the manuscript is 2019_Terminome-Seq.pdf or it can be downloaded
     sc:name "Terra" ;
     sc:url "https://data.terrapop.org/" .
 
-<https://bio.tools/TerrestrialMetagenomeDB_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3053,
-        edam:topic_3174,
-        edam:topic_3697,
-        edam:topic_3837 ;
-    sc:citation <https://doi.org/10.1093/NAR/GKZ994>,
-        "pubmed:31728526" ;
-    sc:description """a public repository of curated and standardized metadata for terrestrial metagenomes.
-
-Microbiome studies focused on the genetic potential of microbial communities (metagenomics) became standard within microbial ecology. MG-RAST and the Sequence Read Archive (SRA), the two main metagenome repositories, contain over 202 858 public available metagenomes and this number has increased exponentially. However, mining databases can be challenging due to misannotated, misleading and decentralized data. The main goal of TerrestrialMetagenomeDB is to make it easier for scientists to find terrestrial metagenomes of interest that could be compared with novel datasets in meta-analyses. We defined terrestrial metagenomes as those that do not belong to marine environments. Further, we curated the database using text mining to assign potential descriptive keywords that better contextualize environmental aspects of terrestrial metagenomes, such as biomes and materials""" ;
-    sc:featureList edam:operation_0306,
-        edam:operation_0310,
-        edam:operation_0362,
-        edam:operation_3431 ;
-    sc:name "TerrestrialMetagenomeDB_autogenerated" ;
-    sc:url "https://webapp.ufz.de/tmdb" .
-
 <https://bio.tools/Tersect> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0625,
         edam:topic_3168 ;
@@ -74970,23 +60576,8 @@ Microbiome studies focused on the genetic potential of microbial communities (me
     sc:name "Tersect" ;
     sc:url "https://github.com/tomkurowski/tersect" .
 
-<https://bio.tools/TestIME> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0203,
-        edam:topic_3068,
-        edam:topic_3678 ;
-    sc:citation <https://doi.org/10.1186/S12911-019-0932-7>,
-        "pmcid:PMC6894108",
-        "pubmed:31801517" ;
-    sc:description """an application for evaluating the efficiency of Chinese input method engines in electronic medical record entry task.
-
-BACKGROUND:With the wide application of Electronic Medical Record (EMR) systems, it has become a daily work for doctors using keyboards to input clinical information into the EMR system. Chinese Input Method Engine (IME) is essential for doctors to convert pinyin to Chinese characters, and an efficient IME would improve doctors' healthcare work. We developed a tool (called TestIME) to evaluating the efficiency of the current IMEs used in doctors' working scenario.
-
-||| HOMEPAGE MISSING!""" ;
-    sc:name "TestIME" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31801517" .
-
 <https://bio.tools/Tetrad> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0611,
         edam:topic_2269 ;
     sc:citation <https://doi.org/10.1080/10705511.2016.1202771>,
@@ -74997,7 +60588,7 @@ BACKGROUND:With the wide application of Electronic Medical Record (EMR) systems,
     sc:url "https://github.com/sbauldry/tetrad" .
 
 <https://bio.tools/ThalPred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3315,
         edam:topic_3474 ;
     sc:citation <https://doi.org/10.1186/S12911-019-0929-2>,
@@ -75011,26 +60602,21 @@ ThalPred: Development of Decision Model for Discriminating Thalassemia Trait and
 
 <https://bio.tools/ThaleMine> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2353" ;
-            sc:name "Ontology data" ;
-            sc:sameAs "http://edamontology.org/data_2353" ],
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:name "Sequence features" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ] ;
+            sc:additionalType "http://edamontology.org/data_2353" ;
+            sc:name "Ontology data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3786" ;
-            sc:name "Query script" ;
-            sc:sameAs "http://edamontology.org/data_3786" ],
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:name "Sequence features" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ],
+            sc:additionalType "http://edamontology.org/data_3753" ;
+            sc:name "Over-representation data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3753" ;
-            sc:name "Over-representation data" ;
-            sc:sameAs "http://edamontology.org/data_3753" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3786" ;
+            sc:name "Query script" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application",
         "Web service" ;
@@ -75053,27 +60639,8 @@ ThalPred: Development of Decision Model for Discriminating Thalassemia Trait and
     sc:softwareVersion "4.3.1-20210109" ;
     sc:url "https://bar.utoronto.ca/thalemine" .
 
-<https://bio.tools/TheBrain> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0102,
-        edam:topic_0621,
-        edam:topic_3420 ;
-    sc:citation <https://doi.org/10.5055/AJDM.2019.0320>,
-        "pubmed:31637690" ;
-    sc:description """Using mind mapping technology for personal preparedness planning.
-
-TheBrain is the most powerful way to capture, organize, and share your notes, files, and web links across all your devices.
-
-Ideas and relationships visualized.
-
-As you shift focus from topic to topic, TheBrain moves right along with you, showing your information and all the connections you've made. It's a natural extension of your thinking. Now you can see how things are connected and you'll never forget or lose an idea.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'preparedness', 'disaster preparedness', 'disaster', 'RESULTS:Mind'""" ;
-    sc:featureList edam:operation_2429 ;
-    sc:name "TheBrain" ;
-    sc:url "https://www.thebrain.com" .
-
 <https://bio.tools/The_Ark> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0607,
         edam:topic_3063,
@@ -75091,7 +60658,7 @@ As you shift focus from topic to topic, TheBrain moves right along with you, sho
     biotools:primaryContact "Adrian Bickerstaffe" .
 
 <https://bio.tools/TheoReTS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0593,
         edam:topic_3307,
@@ -75115,7 +60682,7 @@ As you shift focus from topic to topic, TheBrain moves right along with you, sho
         "Vladimir G. Tyuterev" .
 
 <https://bio.tools/Thera-SAbDab> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0097,
         edam:topic_0154 ;
@@ -75129,7 +60696,7 @@ As you shift focus from topic to topic, TheBrain moves right along with you, sho
     sc:url "http://opig.stats.ox.ac.uk/webapps/therasabdab" .
 
 <https://bio.tools/ThermoLabAnimal> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_3382,
         edam:topic_3500 ;
@@ -75147,7 +60714,7 @@ As you shift focus from topic to topic, TheBrain moves right along with you, sho
     biotools:primaryContact "Paulo Aguiar" .
 
 <https://bio.tools/ThermoNet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_3474,
         edam:topic_3794 ;
@@ -75163,14 +60730,14 @@ As you shift focus from topic to topic, TheBrain moves right along with you, sho
 
 <https://bio.tools/ThermoRawFileParser> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrum" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3712" ;
+            sc:name "Mass spectrum" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrum" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3244" ;
+            sc:name "Mass spectrum" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3172,
@@ -75190,7 +60757,7 @@ As you shift focus from topic to topic, TheBrain moves right along with you, sho
     biotools:primaryContact "Computational Omics and Systems Biology Group" .
 
 <https://bio.tools/Thesaurus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0602,
         edam:topic_3520 ;
@@ -75204,7 +60771,7 @@ As you shift focus from topic to topic, TheBrain moves right along with you, sho
     sc:url "http://bitbucket.org/searleb/thesaurus/" .
 
 <https://bio.tools/Threshold-seq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0659,
@@ -75221,20 +60788,8 @@ As you shift focus from topic to topic, TheBrain moves right along with you, sho
     sc:url "https://cm.jefferson.edu/threshold-seq/" ;
     biotools:primaryContact "Isidore Rigoutsos" .
 
-<https://bio.tools/Thrive> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3418 ;
-    sc:citation <https://doi.org/10.1177/1524839919890870>,
-        "pubmed:31874566" ;
-    sc:description """A Novel Health Education Mobile Application for Mothers Who Have Experienced Intimate Partner Violence.
-
-Intimate partner violence (IPV) has well-documented adverse impact on survivors and their children. In this article, we describe the development and formative evaluation of a trauma-informed, user-friendly Smartphone-based mobile application (app) to address the unmet health needs and improve the well-being of mothers who have experienced IPV. A multidisciplinary team of IPV experts developed the app (called Thrive) in partnership with software developers. Thrive includes three sections: Myself (maternal self-care, stress coping skills), My Child (stress signs in children, talking to children about IPV, mother-child dyadic communication), and My Life (hospital- and community-based resources). Sixteen providers (social workers, IPV advocates, and health care providers) and eight IPV survivors provided feedback about Thrive via structured interviews.
-
-||| HOMEPAGE MISSING!""" ;
-    sc:name "Thrive" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31874566" .
-
 <https://bio.tools/Tibanna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0769 ;
@@ -75252,7 +60807,7 @@ Intimate partner violence (IPV) has well-documented adverse impact on survivors
         "Peter J. Park" .
 
 <https://bio.tools/TideHunter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0749,
         edam:topic_2885 ;
@@ -75268,7 +60823,7 @@ Intimate partner violence (IPV) has well-documented adverse impact on survivors
     sc:url "https://github.com/yangao07/TideHunter" .
 
 <https://bio.tools/Time-energy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3077,
         edam:topic_3277,
         edam:topic_3678 ;
@@ -75279,27 +60834,8 @@ Intimate partner violence (IPV) has well-documented adverse impact on survivors
     sc:name "Time-energy" ;
     sc:url "https://github.com/dloghin/multicores-time-energy" .
 
-<https://bio.tools/TimeCaT> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0089,
-        edam:topic_0769,
-        edam:topic_3063 ;
-    sc:citation <https://doi.org/10.1111/JJNS.12296>,
-        "pubmed:31621190" ;
-    sc:description """Refinement, reliability and validity of the Time Capture Tool (TimeCaT) using the Omaha System to support data capture for time motion studies.
-
-The intrinsic variability of clinical workflow demands a representative sampling and scheduling of observations. TimeCaT facilitates this with an observations scheduling module.
-
-The Touch-timestamp feature allows observers to redirect their attention to the environment being studied. Additionally, the capability to correct data during the observation ensures clean data for the principal investigator.
-
-Our novel 3-dimensional approach to capturing multi-tasking provides an easy, accurate and reliable means for recording real-world complex multi tasking scenarios""" ;
-    sc:featureList edam:operation_2428,
-        edam:operation_3454,
-        edam:operation_3799 ;
-    sc:name "TimeCaT" ;
-    sc:url "https://lopetegui.net/timecat/39/login/" .
-
 <https://bio.tools/Tn-seq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0798,
         edam:topic_3168,
         edam:topic_3386 ;
@@ -75313,7 +60849,7 @@ Our novel 3-dimensional approach to capturing multi-tasking provides an easy, ac
     sc:url "https://github.com/WhiteleyLab/Tn-seq" .
 
 <https://bio.tools/TogoGenome> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0089,
@@ -75336,7 +60872,7 @@ Our novel 3-dimensional approach to capturing multi-tasking provides an easy, ac
     biotools:primaryContact "Keita Urashima" .
 
 <https://bio.tools/TogoStanza> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0637,
@@ -75361,7 +60897,7 @@ Our novel 3-dimensional approach to capturing multi-tasking provides an easy, ac
     biotools:primaryContact "Keita Urashima" .
 
 <https://bio.tools/Tomato_Genome_Browser> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0622 ;
     sc:citation <https://doi.org/10.1186/1471-2105-9-S2-S7> ;
@@ -75377,7 +60913,7 @@ Our novel 3-dimensional approach to capturing multi-tasking provides an easy, ac
     sc:url "http://cab.unina.it/cgi-bin/gb2/gbrowse/SL250/" .
 
 <https://bio.tools/Top-Down_Garbage_Collector> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -75397,7 +60933,7 @@ Our novel 3-dimensional approach to capturing multi-tasking provides an easy, ac
         "Paulo C. Carvalho" .
 
 <https://bio.tools/Topaz> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3382,
         edam:topic_3474 ;
@@ -75413,7 +60949,7 @@ Our novel 3-dimensional approach to capturing multi-tasking provides an easy, ac
     sc:url "http://topaz.csail.mit.edu" .
 
 <https://bio.tools/Topaz-Denoise> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3382,
         edam:topic_3474 ;
@@ -75427,7 +60963,7 @@ Our novel 3-dimensional approach to capturing multi-tasking provides an easy, ac
     sc:url "https://github.com/tbepler/topaz" .
 
 <https://bio.tools/Topconfects> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3170,
@@ -75450,7 +60986,7 @@ Our novel 3-dimensional approach to capturing multi-tasking provides an easy, ac
     sc:url "http://bioconductor.org/packages/release/bioc/html/topconfects.html" .
 
 <https://bio.tools/Topological_Tumor_Graphs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0625,
         edam:topic_0634,
@@ -75468,13 +61004,13 @@ Topological-tumour-graphs""" ;
     sc:url "https://github.com/Henrik86/Topological-tumour-graphs" .
 
 <https://bio.tools/ToulligQC> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "A post sequencing QC tool for Oxford Nanopore sequencers." ;
     sc:name "ToulligQC" ;
     sc:url "https://github.com/GenomicParisCentre/toulligQC" .
 
 <https://bio.tools/Tox21> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0593,
         edam:topic_3343 ;
@@ -75486,18 +61022,8 @@ Topological-tumour-graphs""" ;
     sc:name "Tox21" ;
     sc:url "https://tripod.nih.gov/tox21/samples" .
 
-<https://bio.tools/Trabecula> a sc:SoftwareApplication ;
-    sc:citation <https://doi.org/10.1097/HP.0000000000001127>,
-        "pubmed:31764420" ;
-    sc:description """A Random Generator of Computational Phantoms for Bone Marrow Dosimetry.
-
-This study was motivated by the efforts to evaluate radiation risk for leukemia incidence in the Techa River cohort, where the main bone marrow dose contributors were Sr (bone-seeking beta emitters). Energy deposition in bone marrow targets was evaluated by simulating radiation particle transport using computational phantoms. The present paper describes the computer program Trabecula implementing an algorithm for parametric generation of computational phantoms, which serve as the basis for calculating bone marrow doses. Trabecula is a user-friendly tool that automatically converts analytical models into voxelized representations that are directly compatible as input to Monte Carlo N Particle code.""" ;
-    sc:featureList edam:operation_3431 ;
-    sc:name "Trabecula" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31764420" .
-
 <https://bio.tools/TraceMontage> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3304,
         edam:topic_3382 ;
     sc:citation <https://doi.org/10.1016/J.JNEUMETH.2019.108560>,
@@ -75508,7 +61034,7 @@ This study was motivated by the efforts to evaluate radiation risk for leukemia
     sc:url "https://www.cai-lab.org/tracemontage" .
 
 <https://bio.tools/Track-Control> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3304,
         edam:topic_3382,
         edam:topic_3421 ;
@@ -75518,7 +61044,7 @@ This study was motivated by the efforts to evaluate radiation risk for leukemia
     sc:url "https://github.com/GuangWei-Zhang/TraCon-Toolbox/" .
 
 <https://bio.tools/TrackFind> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Bioinformatics portal",
         "Web API",
         "Web service" ;
@@ -75538,7 +61064,7 @@ This study was motivated by the efforts to evaluate radiation risk for leukemia
         "Eivind Hovig" .
 
 <https://bio.tools/TractaViewer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0659,
@@ -75559,7 +61085,7 @@ This study was motivated by the efforts to evaluate radiation risk for leukemia
     biotools:primaryContact "Neil Pearson" .
 
 <https://bio.tools/TractoFlow> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3384,
@@ -75579,7 +61105,7 @@ This study was motivated by the efforts to evaluate radiation risk for leukemia
     sc:url "http://github.com/scilus/tractoflow" .
 
 <https://bio.tools/Trainable_Weka_Segmentation> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3068,
         edam:topic_3382,
@@ -75598,7 +61124,7 @@ This study was motivated by the efforts to evaluate radiation risk for leukemia
     biotools:primaryContact "Ignacio Arganda-Carreras" .
 
 <https://bio.tools/Trans-NanoSim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_3170,
         edam:topic_3308,
@@ -75615,13 +61141,13 @@ The second version of NanoSim (v2.0.0) uses minimap2 as default aligner to align
     sc:url "https://github.com/bcgsc/NanoSim" .
 
 <https://bio.tools/TransDecoder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "TransDecoder identifies candidate coding regions within transcript sequences, such as those generated by de novo RNA-Seq transcript assembly using Trinity, or constructed based on RNA-Seq alignments to the genome using Tophat and Cufflinks." ;
     sc:name "TransDecoder" ;
     sc:url "https://github.com/TransDecoder/TransDecoder/wiki" .
 
 <https://bio.tools/TransLiG> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3170,
@@ -75641,7 +61167,7 @@ The second version of NanoSim (v2.0.0) uses minimap2 as default aligner to align
     sc:url "https://sourceforge.net/projects/transcriptomeassembly/files/" .
 
 <https://bio.tools/TransPrise> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0749,
         edam:topic_0780,
@@ -75666,7 +61192,7 @@ A deep learning approach for precise prediction of eukaryotic transcription star
     sc:url "https://github.com/StepanAbstro/TransPrise" .
 
 <https://bio.tools/Transcriptologs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0084 ;
@@ -75682,7 +61208,7 @@ A deep learning approach for precise prediction of eukaryotic transcription star
     biotools:primaryContact "Luca Ambrosino" .
 
 <https://bio.tools/Transformer-CNN> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2258,
         edam:topic_3382,
         edam:topic_3474 ;
@@ -75697,7 +61223,7 @@ The repository contains the source code for a new Transformer-CNN method describ
     sc:url "https://github.com/bigchem/transformer-cnn" .
 
 <https://bio.tools/Transition_Scale-Spaces> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2229 ;
     sc:citation <https://doi.org/10.1162/NECO_A_01255>,
         "pubmed:31835003" ;
@@ -75708,7 +61234,7 @@ The repository contains the source code for a new Transformer-CNN method describ
     sc:url "https://github.com/rochus/transitionscalespace" .
 
 <https://bio.tools/Transitivity> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0821,
         edam:topic_3314,
         edam:topic_3512 ;
@@ -75721,18 +61247,8 @@ The repository contains the source code for a new Transformer-CNN method describ
     sc:name "Transitivity" ;
     sc:url "http://www.vhcsgroup.com/transitivity" .
 
-<https://bio.tools/Transplant> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0634,
-        edam:topic_3395,
-        edam:topic_3421 ;
-    sc:citation <https://doi.org/10.1590/0034-7167-2018-0669>,
-        "pubmed:31432957" ;
-    sc:description "> LOW CONFIDENCE! | > COMMON LINK WITH (PUB. & NAME DIFFERENT) bio.tools/Ribopeaks (COM.) | Virtual learning object in hematopoietic stem cell transplantation for autoimmune diseases | O Transplantar é um site desenvolvido para reunir pacientes, familiares, profissionais de saúde e interessados em receber orientações e informações sobre o Transplante Autólogo de Células-Tronco Hematopoéticas para doenças autoimunes. Encontre, em cada módulo, orientações de acordo com seus interesses e necessidades" ;
-    sc:name "Transplant" ;
-    sc:url "http://www.transplantardai.com.br" .
-
 <https://bio.tools/Transposons> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_0798,
@@ -75753,7 +61269,7 @@ The repository contains the source code for a new Transformer-CNN method describ
     biotools:primaryContact "Maria Poptsova" .
 
 <https://bio.tools/Tree-Weighting> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3474 ;
     sc:citation "pubmed:31797618" ;
     sc:description "Tree-Weighting for Multi-Study Ensemble Learners." ;
@@ -75761,7 +61277,7 @@ The repository contains the source code for a new Transformer-CNN method describ
     sc:url "https://github.com/m-ramchandran/tree-weighting" .
 
 <https://bio.tools/TreeCluster> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3293,
         edam:topic_3305 ;
@@ -75777,7 +61293,7 @@ The repository contains the source code for a new Transformer-CNN method describ
     sc:url "https://github.com/niemasd/TreeCluster" .
 
 <https://bio.tools/TreeExp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3170,
@@ -75799,7 +61315,7 @@ The repository contains the source code for a new Transformer-CNN method describ
         "Xun Gu" .
 
 <https://bio.tools/TreeFix-TP> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_3168,
         edam:topic_3301,
@@ -75822,7 +61338,7 @@ TreeFix-TP is a program for reconstructing highly accurate transmission phylogen
     sc:url "https://compbio.engr.uconn.edu/software/treefix-tp/" .
 
 <https://bio.tools/TreeMerge> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0194,
         edam:topic_3512 ;
@@ -75837,7 +61353,7 @@ TreeFix-TP is a program for reconstructing highly accurate transmission phylogen
     sc:url "http://github.com/ekmolloy/treemerge" .
 
 <https://bio.tools/Treerecs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0623,
         edam:topic_3293 ;
@@ -75851,7 +61367,7 @@ TreeFix-TP is a program for reconstructing highly accurate transmission phylogen
     sc:url "https://project.inria.fr/treerecs/" .
 
 <https://bio.tools/TreeshrewDB> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0199,
         edam:topic_3500 ;
@@ -75865,7 +61381,7 @@ TreeFix-TP is a program for reconstructing highly accurate transmission phylogen
     sc:url "http://www.treeshrewdb.org" .
 
 <https://bio.tools/TriPOINT> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0204,
@@ -75888,7 +61404,7 @@ TreeFix-TP is a program for reconstructing highly accurate transmission phylogen
     biotools:primaryContact "Asa Thibodeau" .
 
 <https://bio.tools/Trimitomics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3170,
@@ -75911,7 +61427,7 @@ TreeFix-TP is a program for reconstructing highly accurate transmission phylogen
         "Bruna Plese" .
 
 <https://bio.tools/Tripal_MapViewer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0625,
         edam:topic_3489 ;
@@ -75928,7 +61444,7 @@ Tripal is an open-source, resource-efficient toolkit for construction of genomic
     sc:url "https://gitlab.com/mainlabwsu/tripal_map" .
 
 <https://bio.tools/TropGeneDB> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_3810 ;
     sc:description "TropGeneDB is a database that manages genomic, genetic and phenotypic information about tropical crops. It is organised on a crop basis." ;
@@ -75936,7 +61452,7 @@ Tripal is an open-source, resource-efficient toolkit for construction of genomic
     sc:url "http://tropgenedb.cirad.fr/tropgene/JSP/index.jsp" .
 
 <https://bio.tools/Tulip> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3169,
         edam:topic_3173,
@@ -75957,7 +61473,7 @@ Tripal is an open-source, resource-efficient toolkit for construction of genomic
     biotools:primaryContact "An Zheng" .
 
 <https://bio.tools/TumorCNV> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0625,
@@ -75978,7 +61494,7 @@ Tripal is an open-source, resource-efficient toolkit for construction of genomic
     biotools:primaryContact "Yongzhuang Liu" .
 
 <https://bio.tools/TupaiaBase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3308,
         edam:topic_3512 ;
@@ -75993,13 +61509,13 @@ Tripal is an open-source, resource-efficient toolkit for construction of genomic
     sc:url "http://tupaiabase.org" .
 
 <https://bio.tools/Tutorial_MD_Setup> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "Protein MD Setup tutorial using BioExcel Building Blocks - a Jupyter Notebook tutorial." ;
     sc:name "Tutorial: MD Setup" ;
     sc:url "https://github.com/bioexcel/biobb_wf_md_setup" .
 
 <https://bio.tools/TwinsUK> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3305,
         edam:topic_3399,
         edam:topic_3697 ;
@@ -76010,7 +61526,7 @@ Tripal is an open-source, resource-efficient toolkit for construction of genomic
     sc:url "http://twinsuk.ac.uk/resources-for-researchers/access-our-data/" .
 
 <https://bio.tools/TypeTE> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0625,
         edam:topic_3170,
@@ -76033,7 +61549,7 @@ Please adress all you questions and comments using the "issue" tab of the reposi
     sc:url "https://github.com/clemgoub/TypeTE" .
 
 <https://bio.tools/U-PASS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3517 ;
     sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTZ637>,
@@ -76045,7 +61561,7 @@ Please adress all you questions and comments using the "issue" tab of the reposi
     sc:url "https://github.com/Pill-GZ/U-PASS" .
 
 <https://bio.tools/UALCAN> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
@@ -76067,7 +61583,7 @@ Please adress all you questions and comments using the "issue" tab of the reposi
     sc:url "http://ualcan.path.uab.edu/analysis.html" .
 
 <https://bio.tools/UBDs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Bioinformatics portal",
         "Database portal",
         "Suite" ;
@@ -76083,7 +61599,7 @@ This cross-resource infrastructure is essential for an efficient, modernized bio
     sc:url "https://github.com/UniBioDicts" .
 
 <https://bio.tools/UCSC_Genome_Browser_Utilities> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:description "Utilities for handling sequences and assemblies from the UCSC Genome Browser project." ;
@@ -76095,26 +61611,8 @@ This cross-resource infrastructure is essential for an efficient, modernized bio
         "Windows" ;
     sc:url "http://hgdownload.cse.ucsc.edu/downloads.html" .
 
-<https://bio.tools/UCSR> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3068,
-        edam:topic_3390,
-        edam:topic_3393,
-        edam:topic_3575 ;
-    sc:citation <https://doi.org/10.2989/16085906.2019.1680398>,
-        "pubmed:31779571" ;
-    sc:description """Developing the Global Health Cost Consortium Unit Cost Study Repository for HIV and TB.
-
-Consistently defined, accurate, and easily accessible cost data are a valuable resource to inform efficiency analyses, budget preparation, and sustainability planning in global health. The Global Health Cost Consortium (GHCC) designed the Unit Cost Study Repository (UCSR) to be a resource for standardised HIV and TB intervention cost data displayed by key characteristics such as intervention type, country, and target population.
-
-||| HOMEPAGE BROKEN!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'Health', 'GHCC', 'UCSR GHCC', 'Developing Global Health Cost Consortium Unit Cost Study Repository HIV TB'""" ;
-    sc:featureList edam:operation_2422 ;
-    sc:name "UCSR" ;
-    sc:url "https://ghcosting.org/pages/data/ucsr/" .
-
 <https://bio.tools/UGICR> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_2640,
         edam:topic_3305,
@@ -76129,7 +61627,7 @@ Consistently defined, accurate, and easily accessible cost data are a valuable r
     sc:url "https://ugicr.org.au/" .
 
 <https://bio.tools/ULTRA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0157,
         edam:topic_0749,
         edam:topic_2885 ;
@@ -76150,7 +61648,7 @@ Consistently defined, accurate, and easily accessible cost data are a valuable r
     biotools:primaryContact "Daniel Olson" .
 
 <https://bio.tools/UMI-VarCal> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_3120,
         edam:topic_3168 ;
@@ -76164,7 +61662,7 @@ Consistently defined, accurate, and easily accessible cost data are a valuable r
     sc:url "https://gitlab.com/vincent-sater/umi-varcal-master" .
 
 <https://bio.tools/UNCOVER> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_2640,
@@ -76186,7 +61684,7 @@ Consistently defined, accurate, and easily accessible cost data are a valuable r
     biotools:primaryContact <https://orcid.org/0000-0003-2244-2320> .
 
 <https://bio.tools/UNCeqR> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0199,
@@ -76206,7 +61704,7 @@ Consistently defined, accurate, and easily accessible cost data are a valuable r
     biotools:primaryContact "Matt Wilkerson" .
 
 <https://bio.tools/UNI-EM> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_2229,
         edam:topic_3382,
@@ -76228,7 +61726,7 @@ Urakubo, H., Bullmann, T., Kubota, Y., Oba, S., Ishii, S., UNI-EM: An Environmen
     sc:url "https://github.com/urakubo/UNI-EM" .
 
 <https://bio.tools/UNIPred-Web> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_1775,
         edam:topic_3518 ;
@@ -76243,7 +61741,7 @@ Urakubo, H., Bullmann, T., Kubota, Y., Oba, S., Ishii, S., UNI-EM: An Environmen
     sc:url "http://unipred.di.unimi.it" .
 
 <https://bio.tools/UNRAVEL> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3335,
         edam:topic_3337,
@@ -76264,7 +61762,7 @@ Urakubo, H., Bullmann, T., Kubota, Y., Oba, S., Ishii, S., UNI-EM: An Environmen
     sc:url "http://www.unravelrdp.nl" .
 
 <https://bio.tools/UNet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0611,
         edam:topic_3384,
         edam:topic_3444,
@@ -76286,7 +61784,7 @@ UNet++ is a new general purpose image segmentation architecture for more accurat
     sc:url "https://github.com/MrGiovanni/UNetPlusPlus" .
 
 <https://bio.tools/UOVOS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0176,
         edam:topic_3382,
         edam:topic_3474 ;
@@ -76299,13 +61797,13 @@ UNet++ is a new general purpose image segmentation architecture for more accurat
     sc:url "https://www.github.com/visiontao/uovos" .
 
 <https://bio.tools/UPCLASS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "A Convolution Neural Network (CNN) model to classify publications with accession annotations according to UniProtKB categories" ;
     sc:name "UPCLASS" ;
     sc:url "http://goldorak.hesge.ch/bioexpclass/upclass/" .
 
 <https://bio.tools/UPObase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0621,
         edam:topic_0637,
@@ -76328,7 +61826,7 @@ Unspecific Peroxygenase Database (UPObase) is a genome mining pipeline based dat
     sc:url "http://upobase.bioinformaticsreview.com" .
 
 <https://bio.tools/URCFG> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0625,
         edam:topic_2229,
@@ -76343,7 +61841,7 @@ Unspecific Peroxygenase Database (UPObase) is a genome mining pipeline based dat
     sc:url "http://www.urcfg.ucla.edu" .
 
 <https://bio.tools/US200_CN200> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0605,
         edam:topic_3384,
         edam:topic_3444 ;
@@ -76357,7 +61855,7 @@ Caucasian and Chinese Brain templates [US200 CN200]""" ;
     sc:url "https://www.nitrc.org/projects/us200_cn200/" .
 
 <https://bio.tools/UT-Heart> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0202,
         edam:topic_3335,
         edam:topic_3379 ;
@@ -76370,7 +61868,7 @@ Caucasian and Chinese Brain templates [US200 CN200]""" ;
     sc:url "http://ut-heart.com/" .
 
 <https://bio.tools/UTAP> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3308 ;
@@ -76389,7 +61887,7 @@ Caucasian and Chinese Brain templates [US200 CN200]""" ;
     biotools:primaryContact "Refael Kohen" .
 
 <https://bio.tools/UTRome> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0659,
         edam:topic_0749,
@@ -76411,14 +61909,14 @@ The UTRome.org database is intended as a comprehensive resource for 3'UTR biolog
 
 <https://bio.tools/UVP> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3494" ;
-            sc:name "DNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3494" ],
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "DNA sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3494" ;
-            sc:name "DNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3494" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "DNA sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0622,
@@ -76437,19 +61935,8 @@ The UTRome.org database is intended as a comprehensive resource for 3'UTR biolog
         "2.7.0" ;
     sc:url "https://github.com/CPTR-ReSeqTB/UVP" .
 
-<https://bio.tools/UVR> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0659,
-        edam:topic_0780,
-        edam:topic_3170 ;
-    sc:citation <https://doi.org/10.1101/734129> ;
-    sc:description "> VERY_LOW CONFIDENCE! | > HOMEPAGE MISSING! | > CORRECT NAME OF TOOL COULD ALSO BE 'swuensis', 'R-Bioconductor', 'NOISeq' (bio.tools/noiseq), 'hartwegiana' | Computational search for UV radiation resistance strategies in Deinococcus swuensis isolated from Paramo ecosystems | Abstract Ultraviolet radiation (UVR) is widely known as deleterious for many organisms since it can cause damage to biomolecules either directly or indirectly via the formation of reactive oxygen species. The goal of this study was to analyze the capacity of high-mountain Espeletia hartwegiana plant phyllosphere microorganisms to survive UVR and to identify genes related to resistance strategies. A strain of Deinococcus swuensis showed a high survival rate of up to 60% after UVR treatment at 800 J m 2 and was used for differential expression analysis using RNA-seq after exposing cells to 400 J m 2 of UVR (with > 95% survival rate)" ;
-    sc:featureList edam:operation_3192,
-        edam:operation_3223 ;
-    sc:name "UVR" ;
-    sc:url "https://doi.org/10.1101/734129" .
-
 <https://bio.tools/Ularcirc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3320,
         edam:topic_3512 ;
@@ -76462,7 +61949,7 @@ The UTRome.org database is intended as a comprehensive resource for 3'UTR biolog
     sc:url "https://github.com/VCCRI/Ularcirc" .
 
 <https://bio.tools/Umbria> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102 ;
     sc:citation <https://doi.org/10.7287/PEERJ.PREPRINTS.2096V2> ;
     sc:description """Geothematic open data in Umbria region.
@@ -76481,7 +61968,7 @@ La cartografia di pericolosità sismica vettoriale della Regione Umbria è stata
     sc:url "http://dati.umbria.it" .
 
 <https://bio.tools/UniRep> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0130,
         edam:topic_0605,
         edam:topic_3306,
@@ -76507,7 +61994,7 @@ First clone or fork this repository and navigate to the repository's top directo
     sc:url "https://github.com/churchlab/UniRep" .
 
 <https://bio.tools/UnicornPapers> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Library" ;
     sc:applicationSubCategory edam:topic_0605,
@@ -76526,7 +62013,7 @@ Unicorn Papers are based on an equal contribution (EC) citation model in which t
     sc:url "http://unicornpapers.org" .
 
 <https://bio.tools/UniprotR> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
         edam:topic_0121,
@@ -76551,7 +62038,7 @@ M. Soudy, A. Anwar, E.A. Ahmed, et al., UniprotR: Retrieving and visualizing pro
     sc:url "https://cran.r-project.org/web/packages/UniprotR/index.html" .
 
 <https://bio.tools/Uniqprimer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0632,
         edam:topic_3168,
         edam:topic_3810 ;
@@ -76563,7 +62050,7 @@ M. Soudy, A. Anwar, E.A. Ahmed, et al., UniprotR: Retrieving and visualizing pro
     sc:url "https://github.com/SouthGreenPlatform/Uniqprimer" .
 
 <https://bio.tools/UnityMol-APBS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0166,
         edam:topic_0176,
@@ -76583,7 +62070,7 @@ Implementation of a visualization prototype for molecular structures and network
     sc:url "https://sourceforge.net/projects/unitymol" .
 
 <https://bio.tools/VADR> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0160,
         edam:topic_0622,
@@ -76598,22 +62085,8 @@ Implementation of a visualization prototype for molecular structures and network
     sc:name "VADR" ;
     sc:url "https://github.com/nawrockie/vadr" .
 
-<https://bio.tools/VAD_Emergency> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3421 ;
-    sc:citation <https://doi.org/10.1097/DCC.0000000000000397>,
-        "pubmed:31789980" ;
-    sc:description """A Quality Improvement Project of a Ventricular Assist Device Program.
-
-BACKGROUND:As of December 31, 2016, in the United States, 22 866 patients received left ventricular assist devices (LVADs) (J Heart Lung Transplant. 2017;36(10):1080-1086). First responders are generally unfamiliar with LVAD equipment functionality (J Heart Lung Transplant. 2018;37(4):S275). When a patient has an emergency either clinically or with a controller alarm or failure, speaking with ventricle assist device (VAD)-trained personnel is imperative to the prevention of adverse events. Starting February 2017, an LVAD program totaling 181 patients at a large teaching hospital changed their afterhours process to reduce wait time between patient call and talking to VAD-trained personnel to increase patient safety and patient satisfaction.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'VAD'""" ;
-    sc:name "VAD Emergency" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31789980" .
-
 <https://bio.tools/VAPPER> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2830,
         edam:topic_3168,
         edam:topic_3308 ;
@@ -76627,22 +62100,8 @@ BACKGROUND:As of December 31, 2016, in the United States, 22 866 patients receiv
     sc:name "VAPPER" ;
     sc:url "https://github.com/PGB-LIV/VAPPER" .
 
-<https://bio.tools/VAP_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3170,
-        edam:topic_3308,
-        edam:topic_3673 ;
-    sc:citation <https://doi.org/10.1371/JOURNAL.PONE.0216838>,
-        "pmcid:PMC6756534",
-        "pubmed:31545812" ;
-    sc:description "> NAME EQUAL TO (PUB. DIFFERENT) bio.tools/vap | Variant analysis pipeline for accurate detection of genomic variants from transcriptome sequencing data | VAP : For Reference mapping and Variant detection | Thank you for your interest in using the Variant Analysis Pipeline. VAP is a comprehensive workflow for reference mapping and variant detection of genomic and transcriptomic reads using a suite of bioinformatics tools" ;
-    sc:featureList edam:operation_0484,
-        edam:operation_3196,
-        edam:operation_3227 ;
-    sc:name "VAP_autogenerated" ;
-    sc:url "https://modupeore.github.io/VAP/" .
-
 <https://bio.tools/VARIDT> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3295,
         edam:topic_3375,
         edam:topic_3577 ;
@@ -76655,7 +62114,7 @@ BACKGROUND:As of December 31, 2016, in the United States, 22 866 patients receiv
     sc:url "http://varidt.idrblab.net/ttd/" .
 
 <https://bio.tools/VARUS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0621,
         edam:topic_3170,
@@ -76677,7 +62136,7 @@ VARUS was originally written by Willy Bruhn as a Bachelors' thesis supervised by
     sc:url "https://github.com/Gaius-Augustus/VARUS" .
 
 <https://bio.tools/VASE> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0154,
         edam:topic_2814,
@@ -76695,7 +62154,7 @@ VARUS was originally written by Willy Bruhn as a Bachelors' thesis supervised by
     sc:url "https://github.com/cmbi/vase" .
 
 <https://bio.tools/VASSL> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3474 ;
     sc:citation <https://doi.org/10.1109/TVCG.2019.2934266>,
         "pubmed:31425086" ;
@@ -76705,7 +62164,7 @@ VARUS was originally written by Willy Bruhn as a Bachelors' thesis supervised by
     sc:url "https://vassl.new-dimension.co" .
 
 <https://bio.tools/VCF-DART> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3676 ;
     sc:citation <https://doi.org/10.1016/J.JMOLDX.2019.07.001>,
         "pubmed:31442673" ;
@@ -76716,7 +62175,7 @@ VARUS was originally written by Willy Bruhn as a Bachelors' thesis supervised by
     sc:url "https://github.com/sirselim/diagnostics_exome_reporting" .
 
 <https://bio.tools/VCF-Server> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3068,
         edam:topic_3168,
@@ -76739,7 +62198,7 @@ VARUS was originally written by Willy Bruhn as a Bachelors' thesis supervised by
     biotools:primaryContact <https://orcid.org/0000-0001-8347-0830> .
 
 <https://bio.tools/VCF2PopTree> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0102,
         edam:topic_0625,
@@ -76757,27 +62216,8 @@ purely within the user’s computer/browser. VCF2PopTree is compatible""" ;
     sc:name "VCF2PopTree" ;
     sc:url "https://github.com/sansubs/vcf2pop" .
 
-<https://bio.tools/VCF2PopTree_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0084,
-        edam:topic_0625,
-        edam:topic_2885 ;
-    sc:citation <https://doi.org/10.7717/PEERJ.8213>,
-        "pmcid:PMC6901002",
-        "pubmed:31824783" ;
-    sc:description """a client-side software to construct population phylogeny from genome-wide SNPs.
-
-VCF2PopTree is a client-side software written in Javascript and it runs.
-
-purely within the user’s computer/browser. VCF2PopTree is compatible""" ;
-    sc:featureList edam:operation_0323,
-        edam:operation_0326,
-        edam:operation_3196 ;
-    sc:license "MIT" ;
-    sc:name "VCF2PopTree_autogenerated" ;
-    sc:url "https://github.com/sansubs/vcf2pop" .
-
 <https://bio.tools/VCPA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3673,
@@ -76796,7 +62236,7 @@ purely within the user’s computer/browser. VCF2PopTree is compatible""" ;
     sc:url "https://www.niagads.org/resources/tools-and-software/vcpa" .
 
 <https://bio.tools/VDING> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3068,
         edam:topic_3452 ;
     sc:citation <https://doi.org/10.1371/JOURNAL.PONE.0225823>,
@@ -76810,7 +62250,7 @@ purely within the user’s computer/browser. VCF2PopTree is compatible""" ;
     sc:url "https://github.com/coolleafly/VDING" .
 
 <https://bio.tools/VDJbase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0203,
         edam:topic_0625,
@@ -76833,7 +62273,7 @@ VDJbase is a publicly available database that offers easy searching of genotype
     sc:url "https://www.vdjbase.org/" .
 
 <https://bio.tools/VDJdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0160,
         edam:topic_0219,
@@ -76848,7 +62288,7 @@ VDJbase is a publicly available database that offers easy searching of genotype
     sc:url "https://vdjdb.cdr3.net" .
 
 <https://bio.tools/VEF> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2885,
         edam:topic_3474,
         edam:topic_3673,
@@ -76870,58 +62310,8 @@ This bash script calls example script vef_clf.py and vef_apl.py located in the e
     sc:name "VEF" ;
     sc:url "http://github.com/ChuanyiZ/vef" .
 
-<https://bio.tools/VEGA_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0654,
-        edam:topic_2269,
-        edam:topic_3343 ;
-    sc:citation <https://doi.org/10.1016/J.JHAZMAT.2019.121638>,
-        "pubmed:31757721" ;
-    sc:description """New in silico models to predict in vitro micronucleus induction as marker of genotoxicity.
-
-VEGA HUB – Virtual models for property Evaluation of chemicals within a Global Architecture.
-
-We use cookies to personalise content and ads, to provide social media features and to analyse our traffic. We also share information about your use of our site with our social media, advertising and analytics partners who may combine it with other information that you’ve provided to them or that they’ve collected from your use of their services.
-
-Use necessary cookies only Allow all cookies Show details.
-
-Offering a family of tools to evaluate chemical hazard: VEGA, ToxRead, ToxWeight, ToxDelta, and JANUS.
-
-Necessary (2) Preferences (0) Statistics (4) Marketing (0) Unclassified (0).
-
-||| NAME (VEGA) SIMILAR TO (PUB. DIFFERENT) bio.tools/vega (Vega).
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'genotoxicity', 'micronucleus', 'SARpy'""" ;
-    sc:featureList edam:operation_3664 ;
-    sc:name "VEGA_autogenerated" ;
-    sc:url "https://www.vegahub.eu" .
-
-<https://bio.tools/VESPA_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0084,
-        edam:topic_0621,
-        edam:topic_0623,
-        edam:topic_3068,
-        edam:topic_3168 ;
-    sc:citation <https://doi.org/10.7287/PEERJ.PREPRINTS.1895V2> ;
-    sc:description """Very large-scale Evolutionary and Selective Pressure Analyses.
-
-Computational & Molecular Evolutionary Biology Group, The University of Nottingham.
-
-“VESPA: Very large-scale Evolutionary and Selective Pressure Analyses”.
-
-Perl dependencies: VESPA requires users to install multiple perl scripts and modules to be fully operational. The perl dependencies may be found alongside vespa.py within the program tarball. Once downloaded, it can be installed as follows:.
-
-We have written a manual that will take you through the process step by step. This is constantly evolving with feedback with feedback from our users, and the latest version is hosted as vespa-evol on ReadTheDocs.
-
-||| NAME EQUAL TO (PUB. DIFFERENT) bio.tools/vespa""" ;
-    sc:featureList edam:operation_0540,
-        edam:operation_3454,
-        edam:operation_3478 ;
-    sc:license "GPL-3.0" ;
-    sc:name "VESPA_autogenerated" ;
-    sc:url "http://www.mol-evol.org/VESPA" .
-
 <https://bio.tools/VETA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3077,
         edam:topic_3304,
         edam:topic_3500 ;
@@ -76936,7 +62326,7 @@ The combination of electromyography (EMG) and transcranial magnetic stimulation
     sc:url "https://github.com/greenhouselab/Veta/tree/master/data" .
 
 <https://bio.tools/VEnCode> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:author <https://orcid.org/0000-0001-6985-4520> ;
     sc:description """Performs intersectional genetics-related operations to find VEnCodes using databases provided by the FANTOM5 consortium, namely the CAGE enhancer and transcription start site (TSS) databases.
 
@@ -76949,7 +62339,7 @@ For more information on the VEnCode technology, please refer to Macedo and Gonti
     biotools:primaryContact <https://orcid.org/0000-0001-6985-4520> .
 
 <https://bio.tools/VGE> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0769,
         edam:topic_3372 ;
@@ -76963,11 +62353,13 @@ For more information on the VEnCode technology, please refer to Macedo and Gonti
 
 <https://bio.tools/VHRdb> a sc:SoftwareApplication ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2042" ;
-            sc:name "Evidence" ;
-            sc:sameAs "http://edamontology.org/data_2042" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
-    sc:additionalType "Database portal" ;
+            sc:additionalType "http://edamontology.org/data_2042" ;
+            sc:encodingFormat "http://edamontology.org/format_3620" ;
+            sc:name "Evidence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web API",
+        "Web application" ;
     sc:applicationSubCategory edam:topic_0781,
         edam:topic_3489 ;
     sc:author <https://orcid.org/0000-0002-7141-6340>,
@@ -76989,7 +62381,7 @@ The VHRdb is an online resource that centralizes experimental data related to th
     biotools:primaryContact <https://orcid.org/0000-0001-6875-5758> .
 
 <https://bio.tools/VIBRANT> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0602,
         edam:topic_3174,
@@ -77022,7 +62414,7 @@ Please work through the tutorial and use the intercom button on the bottom right
     sc:url "https://wiki.cyverse.org/wiki/display/DEapps/VIBRANT-1.0.1" .
 
 <https://bio.tools/VIC> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_2640,
         edam:topic_3400 ;
@@ -77037,7 +62429,7 @@ Please work through the tutorial and use the intercom button on the bottom right
     sc:url "https://github.com/HGLab/VIC/" .
 
 <https://bio.tools/VICTOR-crossmatch> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2830,
         edam:topic_3421 ;
@@ -77049,30 +62441,8 @@ Please work through the tutorial and use the intercom button on the bottom right
     sc:name "VICTOR" ;
     sc:url "http://www.transplanttoolbox.org/victor" .
 
-<https://bio.tools/VICTOR_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0625,
-        edam:topic_2830,
-        edam:topic_3421 ;
-    sc:citation <https://doi.org/10.1101/756809> ;
-    sc:description "> NAME EQUAL TO (PUB. DIFFERENT) bio.tools/victor-virus | > NAME (VICTOR) SIMILAR TO (PUB. DIFFERENT) bio.tools/victor (Victor) | A precision virtual crossmatch decision support system for interpretation of ambiguous molecular HLA typing data | VICTOR: VIrtual CrossmaTch for mOleculaR typing data | This prototype tool computes virtual crossmatch using the candidate’s unacceptable antigens including high resolution alleles and molecular HLA typing of the donor | Web services interface information for Transplanttoolbox" ;
-    sc:featureList edam:operation_0416,
-        edam:operation_3196,
-        edam:operation_3891 ;
-    sc:name "VICTOR_autogenerated" ;
-    sc:url "http://www.transplanttoolbox.org/victor" .
-
-<https://bio.tools/VIEW-MOD> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3382 ;
-    sc:citation <https://doi.org/10.1364/OE.27.019950>,
-        "pubmed:31503749" ;
-    sc:description "> HOMEPAGE MISSING! | a versatile illumination engine with a modular optical design for fluorescence microscopy | We developed VIEW-MOD (Versatile Illumination Engine with a Modular Optical Design): a compact, multi-modality microscope, which accommodates multiple illumination schemes including variable angle total internal reflection, point scanning and vertical horizontal light sheet. This system allows combining and flexibly switching between different illuminations and imaging modes by employing three electrically tunable lenses and two fast-steering mirrors. This versatile optics design provides control of 6 degrees of freedom of the illumination source (3 translation, 2 tilt, and beam shape) plus the axial position of the imaging plane. We also developed standalone software with an easy-to-use GUI to calibrate and control the microscope. We demonstrate the applications of this system and software in biosensor imaging, optogenetics and fast 3D volume imaging" ;
-    sc:featureList edam:operation_3443,
-        edam:operation_3552 ;
-    sc:name "VIEW-MOD" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31503749" .
-
 <https://bio.tools/VIO> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0602,
         edam:topic_3308,
@@ -77101,18 +62471,18 @@ Note: This version of statistics metrics does not include any instance data yet.
 
 <https://bio.tools/VIPER_LC-MS> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0944" ;
-            sc:name "Peptide mass fingerprint" ;
-            sc:sameAs "http://edamontology.org/data_0944" ],
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3654" ;
+            sc:name "Mass spectrometry spectra" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
+            sc:additionalType "http://edamontology.org/data_0944" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Peptide mass fingerprint" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3382,
@@ -77130,7 +62500,7 @@ Note: This version of statistics metrics does not include any instance data yet.
     sc:url "https://omics.pnl.gov/software/viper" .
 
 <https://bio.tools/VISDB> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0659,
         edam:topic_0749,
@@ -77148,7 +62518,7 @@ VISDB, visdb, virus integration site, viral integration, DNA virus, retrovirus,
     sc:url "https://bioinfo.uth.edu/VISDB" .
 
 <https://bio.tools/VISION> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3168,
         edam:topic_3173 ;
@@ -77161,26 +62531,26 @@ VISDB, visdb, virus integration site, viral integration, DNA virus, retrovirus,
 
 <https://bio.tools/VISOR> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3494" ;
-            sc:name "DNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3494" ],
+            sc:additionalType "http://edamontology.org/data_2914" ;
+            sc:encodingFormat "http://edamontology.org/format_3003" ;
+            sc:name "Sequence features metadata" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2914" ;
-            sc:name "Sequence features metadata" ;
-            sc:sameAs "http://edamontology.org/data_2914" ] ;
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "DNA sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ],
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Sequence variations" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ],
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Sequence variations" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence variations" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_3175,
         edam:topic_3511 ;
@@ -77199,7 +62569,7 @@ VISDB, visdb, virus integration site, viral integration, DNA virus, retrovirus,
     sc:url "https://github.com/davidebolo1993/VISOR" .
 
 <https://bio.tools/VIST> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3379,
         edam:topic_3577 ;
@@ -77212,23 +62582,8 @@ VISDB, visdb, virus integration site, viral integration, DNA virus, retrovirus,
     sc:name "VIST" ;
     sc:url "https://vist.informatik.hu-berlin.de/" .
 
-<https://bio.tools/VIVA_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0625,
-        edam:topic_0749,
-        edam:topic_3168 ;
-    sc:citation <https://doi.org/10.1038/S41598-019-49114-Z>,
-        "pmcid:PMC6718772",
-        "pubmed:31477778" ;
-    sc:description "VIVA (VIsualization of VAriants) | Julia package powering VIVA, our tool for visualization of genomic variation data. Manual: | VIVA: A VCF File Visualization Tool and VariantVisualization.jl | VIVA Command Line Tool and Jupyter Notebook | VIVA is a user-friendly command line tool for creating publication quality graphics from Variant Call Format (VCF) files | VIVA is a user-friendly command line tool built with our VariantVisualization.jl package for exploratory analysis and generation of publication quality graphics for variant analysis projects using Variant Call Format (VCF) files | Then, follow add Julia to the path variable to run VIVA" ;
-    sc:featureList edam:operation_3196,
-        edam:operation_3227,
-        edam:operation_3675 ;
-    sc:name "VIVA_autogenerated" ;
-    sc:softwareHelp <https://compbiocore.github.io/VariantVisualization.jl/latest/installation/#running-viva-with-docker-or-docker-compose> ;
-    sc:url "https://compbiocore.github.io/VariantVisualization.jl/latest/" .
-
 <https://bio.tools/VMD_Store> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3382,
         edam:topic_3489,
         edam:topic_3892 ;
@@ -77246,7 +62601,7 @@ Biomolecular SIMulations Research Group""" ;
     sc:url "https://biosim.pt/how-to-install-vmd-store/" .
 
 <https://bio.tools/VMH> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
@@ -77267,7 +62622,7 @@ Biomolecular SIMulations Research Group""" ;
     biotools:primaryContact <https://orcid.org/0000-0002-8071-7110> .
 
 <https://bio.tools/VNA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3416,
         edam:topic_3452 ;
     sc:citation <https://doi.org/10.1002/JOR.24568>,
@@ -77280,7 +62635,7 @@ Biomolecular SIMulations Research Group""" ;
     sc:url "http://github.com/McBrideGagyiLab/VNA" .
 
 <https://bio.tools/VOCCluster> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
         edam:topic_3172,
@@ -77298,7 +62653,7 @@ Metabolic profiling of breath analysis involves processing, alignment, scaling a
     sc:url "https://github.com/Yaser218/Untargeted-Metabolomics-Clustering/tree/master/VOCCluster" .
 
 <https://bio.tools/VOLARE> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3400,
         edam:topic_3697 ;
@@ -77313,7 +62668,7 @@ Metabolic profiling of breath analysis involves processing, alignment, scaling a
     sc:url "http://aasix.cytoanalytics.com/volare/" .
 
 <https://bio.tools/VOLPES> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0097,
@@ -77337,7 +62692,7 @@ Metabolic profiling of breath analysis involves processing, alignment, scaling a
     biotools:primaryContact <https://orcid.org/0000-0003-3814-3675> .
 
 <https://bio.tools/VPAC> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3170,
@@ -77359,17 +62714,8 @@ Metabolic profiling of breath analysis involves processing, alignment, scaling a
     sc:url "https://github.com/ShengquanChen/VPAC" ;
     biotools:primaryContact "Rui Jiang" .
 
-<https://bio.tools/VPModel> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3318,
-        edam:topic_3855 ;
-    sc:citation <https://doi.org/10.1109/TVCG.2019.2932276>,
-        "pubmed:31403424" ;
-    sc:description "> HOMEPAGE MISSING! | High-Fidelity Product Simulation in a Virtual-Physical Environment | In the development of a new product, the design team must describe the expected effects of the final products to potential users and stakeholders. However, existing prototyping tools can only present a product imperfectly, due to limitations at different levels. Specifically, the physical product model, which may be the product of 3D printing, could lack a visual interface; the presentation of the product through modeling software such as Rhinoceros 3D does not provide good realistic tactile perception; or the interface platforms, such as Axure RP, used to display the interactive effects differ from those to be used in the actual operation. Thus, we present the VPModel, a high-fidelity prototyping tool, able to integrate multiple prototyping methods simultaneously" ;
-    sc:name "VPModel" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31403424" .
-
 <https://bio.tools/VPOT> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3168 ;
     sc:citation <https://doi.org/10.1016/J.GPB.2019.11.001>,
@@ -77387,7 +62733,7 @@ VPOT is a Python tool written to allow prioritisation of variants in ANNOVAR ann
     sc:url "https://github.com/VCCRI/VPOT/" .
 
 <https://bio.tools/VRTK> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2258,
         edam:topic_3292,
@@ -77404,40 +62750,8 @@ VRTK is a collection of useful, reusable solutions to common problems found when
     sc:name "VRTK" ;
     sc:url "http://www.vrtk.io" .
 
-<https://bio.tools/VSAQs> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0634,
-        edam:topic_0749 ;
-    sc:citation <https://doi.org/10.2147/AMEP.S197977>,
-        "pmcid:PMC6839581",
-        "pubmed:31807109" ;
-    sc:description """A Novel Approach To Summative Assessments In Pathology.
-
-Background:A solid understanding of the science underpinning treatment is essential for all doctors. Pathology teaching and assessment are fundamental components of the undergraduate medicine curriculum. Assessment drives learning and the choice of assessments influences students' learning behaviours. The use of multiple-choice questions is common but is associated with significant cueing and may promote "rote learning". Essay-type questions and Objective Structured Clinical Examinations (OSCEs) are resource-intensive in terms of delivery and marking and do not allow adequate sampling of the curriculum.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'VSAQs SBAQs EMQs', 'Very Short Answer questions', 'VSAQs SBAQs', 'SBAQs EMQs'""" ;
-    sc:name "VSAQs" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31807109" .
-
-<https://bio.tools/VSETP-UAV> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0102,
-        edam:topic_0605,
-        edam:topic_3382,
-        edam:topic_3524,
-        edam:topic_3810 ;
-    sc:citation <https://doi.org/10.20944/PREPRINTS201912.0106.V1> ;
-    sc:description """An Innovative Virtual Simulation Teaching Platform on Digital Mapping with Unmanned Aerial Vehicle for Remote Sensing Education.
-
-This work mainly discusses an innovative teaching platform on Unmanned Aerial Vehicle digital mapping for Remote Sensing (RS) education at Wuhan University, underlining the fast development of RS technology. Firstly, we introduce and we discuss the future development of the Virtual Simulation Experiment Teaching Platform for Unmanned Aerial Vehicle (VSETP-UAV). It includes specific topics such as the &ldquo;Systems and function Design&rdquo;, teaching and learning strategies, and experimental methods. This study shows that VSETP-UAV expands the usual content and training methods related to RS education, and creates a good synergy between teaching and research.
-
-||| HOMEPAGE MISSING!""" ;
-    sc:featureList edam:operation_3443 ;
-    sc:name "VSETP-UAV" ;
-    sc:url "https://doi.org/10.20944/PREPRINTS201912.0106.V1" .
-
 <https://bio.tools/VTA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0611,
         edam:topic_3170 ;
@@ -77449,34 +62763,8 @@ This work mainly discusses an innovative teaching platform on Unmanned Aerial Ve
     sc:name "VTA" ;
     sc:url "https://gitlab.com/mlinitaur/vta-expression-data-extractor" .
 
-<https://bio.tools/VTAY00000000> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0196,
-        edam:topic_0621,
-        edam:topic_3170,
-        edam:topic_3673,
-        edam:topic_3810 ;
-    sc:citation <https://doi.org/10.1016/J.DIB.2019.104693>,
-        "pmcid:PMC6838444",
-        "pubmed:31720340" ;
-    sc:description """causal agent of Cercospora leaf blight and purple seed stain of soybeans.
-
-Cercospora kikuchii strain ARG_18_001, whole genome shotgun sequencing.
-
-LOCUS VTAY01000000 136 rc DNA linear PLN 21-OCT-2019.
-
-Cercospora kikuchii strain ARG_18_001, whole genome shotgun sequencing project.
-
-This entry is the master record for a whole genome shotgun sequencing project and contains no sequence data.
-
-||| COMMON LINK WITH (PUB. & NAME DIFFERENT) bio.tools/insdc (NLM.NIH.GOV/nuccore)""" ;
-    sc:featureList edam:operation_0362,
-        edam:operation_0525,
-        edam:operation_2454 ;
-    sc:name "VTAY00000000" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/nuccore/VTAY00000000" .
-
 <https://bio.tools/VaDER> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3334,
         edam:topic_3384,
@@ -77502,7 +62790,7 @@ Supporting code for the manuscript "Deep learning for clustering of multivariate
     sc:url "https://github.com/johanndejong/VaDER" .
 
 <https://bio.tools/VarCover> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3053,
         edam:topic_3277 ;
     sc:citation <https://doi.org/10.1016/J.JMOLDX.2019.10.005>,
@@ -77514,7 +62802,7 @@ To facilitate reference-material selection for clinical genetic testing laborato
     sc:url "https://github.com/erscott/varcover" .
 
 <https://bio.tools/VarFish> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3325 ;
     sc:description "VarFish is an easy-to-use web-based database system designed for empowering geneticists in the analysis of clinical and whole exome sequencing variant data sets for individuals and families. It provides a set of tools for supporting the full workflow from (i) variant data quality control, (ii) variant filtration and (iii) efficient assessment of variants based on visual alignment inspection and annotation data such as functional and frequency annotation." ;
     sc:license "MIT" ;
@@ -77522,7 +62810,7 @@ To facilitate reference-material selection for clinical genetic testing laborato
     sc:url "https://github.com/bihealth/varfish-server" .
 
 <https://bio.tools/VarGen> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0625,
         edam:topic_0634,
@@ -77539,7 +62827,7 @@ To facilitate reference-material selection for clinical genetic testing laborato
     sc:url "https://github.com/MCorentin/VarGen" .
 
 <https://bio.tools/VarGenius> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2533 ;
     sc:citation <https://doi.org/10.1186/s12859-018-2532-4>,
@@ -77554,28 +62842,8 @@ To facilitate reference-material selection for clinical genetic testing laborato
     sc:url "https://github.com/frankMusacchia/VarGenius" ;
     biotools:primaryContact <https://orcid.org/0000-0001-9440-1080> .
 
-<https://bio.tools/VarID_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0203,
-        edam:topic_0602,
-        edam:topic_2229,
-        edam:topic_3170 ;
-    sc:citation <https://doi.org/10.1038/S41592-019-0632-3>,
-        "pubmed:31740822" ;
-    sc:description """Revealing dynamics of gene expression variability in cell state space.
-
-VarID analysis of murine hematopoietic progenitors and intestinal epithelial cells. VarID is part of RaceID v0.1.4.
-
-||| NAME (VarID) SIMILAR TO (PUB. DIFFERENT) bio.tools/varid (VARID)""" ;
-    sc:featureList edam:operation_2495,
-        edam:operation_3223,
-        edam:operation_3659,
-        edam:operation_3799,
-        edam:operation_3891 ;
-    sc:name "VarID_autogenerated" ;
-    sc:url "https://github.com/dgrun/VarID_analysis" .
-
 <https://bio.tools/VarMap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0166,
@@ -77596,7 +62864,7 @@ VarID analysis of murine hematopoietic progenitors and intestinal epithelial cel
     biotools:primaryContact "James Stephenson" .
 
 <https://bio.tools/VarSelLCM> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:citation <https://doi.org/10.1093/bioinformatics/bty786>,
         "pubmed:30192923" ;
@@ -77617,7 +62885,7 @@ VarID analysis of murine hematopoietic progenitors and intestinal epithelial cel
     biotools:primaryContact "Mohammed Sedki" .
 
 <https://bio.tools/VarSight> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0625,
         edam:topic_3325,
@@ -77637,7 +62905,7 @@ VarSight is a collection of scripts used to test the application of classificati
     sc:url "https://github.com/HudsonAlpha/VarSight" .
 
 <https://bio.tools/VarSite> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0602,
         edam:topic_0634,
@@ -77657,7 +62925,7 @@ Disease Variants and Structure""" ;
     sc:url "https://www.ebi.ac.uk/thornton-srv/databases/VarSite" .
 
 <https://bio.tools/Vargas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3169,
         edam:topic_3170 ;
@@ -77675,7 +62943,7 @@ Vargas computes optimal alignments of short reads to a directed acyclic graph (D
     sc:url "https://github.com/langmead-lab/vargas" .
 
 <https://bio.tools/VariBench> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_2885,
@@ -77693,7 +62961,7 @@ Vargas computes optimal alignments of short reads to a directed acyclic graph (D
     sc:url "http://structure.bmc.lu.se/VariBench/" .
 
 <https://bio.tools/VariCarta> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0219,
         edam:topic_3068,
@@ -77714,7 +62982,7 @@ VariCarta is a database of human DNA genetic variants found in individuals diagn
     sc:url "http://varicarta.msl.ubc.ca" .
 
 <https://bio.tools/VariMerge> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_3174 ;
     sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTZ350>,
@@ -77729,7 +62997,7 @@ VariCarta is a database of human DNA genetic variants found in individuals diagn
     sc:url "https://github.com/cosmo-team/cosmo/tree/VARI-merge" .
 
 <https://bio.tools/VariantStore> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0634,
         edam:topic_3577 ;
@@ -77744,7 +63012,7 @@ VariCarta is a database of human DNA genetic variants found in individuals diagn
     sc:url "https://github.com/Kingsford-Group/variantstore" .
 
 <https://bio.tools/VariantValidator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:citation <https://doi.org/10.1002/humu.23348>,
         "pmcid:PMC5765404",
         "pubmed:28967166" ;
@@ -77761,10 +63029,9 @@ VariantValidator is a highly functional platform enabling high-throughput and em
 
 <https://bio.tools/Variant_Combinaton_Pathogenicity_Predictor> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2887" ;
-            sc:name "Nucleic acid sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2887" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2887" ;
+            sc:name "Nucleic acid sequence record" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0622,
@@ -77796,7 +63063,7 @@ For more information about the method and its usage, you can consult our About p
     biotools:primaryContact <https://orcid.org/0000-0003-3645-1455> .
 
 <https://bio.tools/Variant_Score_Ranker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3676 ;
@@ -77818,7 +63085,7 @@ For more information about the method and its usage, you can consult our About p
     biotools:primaryContact "Dennis Lal" .
 
 <https://bio.tools/Variational_Bayes_approach_GEMINI> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3053 ;
@@ -77838,7 +63105,7 @@ For more information about the method and its usage, you can consult our About p
     sc:url "https://github.com/sellerslab/gemini" .
 
 <https://bio.tools/Varstation> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3053,
         edam:topic_3168,
@@ -77853,7 +63120,7 @@ High precision on genetic analysis""" ;
     sc:url "http://varstation.com" .
 
 <https://bio.tools/VegMarks> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0780,
         edam:topic_2885,
@@ -77871,7 +63138,7 @@ a DNA marker database for vegetables""" ;
     sc:url "https://vegmarks.nivot.affrc.go.jp/resource/" .
 
 <https://bio.tools/Venn-diaNet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_3170,
         edam:topic_3308 ;
@@ -77892,7 +63159,7 @@ Currently, Venn-diaNet uses String DB""" ;
     sc:url "http://biohealth.snu.ac.kr/software/venndianet" .
 
 <https://bio.tools/VeriNA3d> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0097,
@@ -77913,46 +63180,8 @@ Currently, Venn-diaNet uses String DB""" ;
     biotools:primaryContact "Modesto Orozco",
         "Pablo D. Dans" .
 
-<https://bio.tools/VetCOT> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0108,
-        edam:topic_3379 ;
-    sc:citation <https://doi.org/10.1016/J.TCAM.2019.100365>,
-        "pubmed:31837751" ;
-    sc:description """The Veterinary Trauma Registry.
-
-Identification and Verification process – ACVECC-VetCOT.
-
-Identification and Verification process.
-
-This document outlines the processes utilized for identifying, verifying and reverifying hospitals.
-
-The ACVECC VetCOT-Registry Subcommittee (VetCOT-RS) has elected to accept application for use of data from the trauma registry on a rolling basis. Applications for data will be accepted from any ACVECC or ECVECC Diplomate or ACVECC/ECVECC resident-in-training under the advisement of an ACVECC or ECVECC Diplomate.
-
-IDENTIFICATION and VERIFICATION PROCESS – APRIL2018.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'Veterinary Trauma', 'Trauma', 'Veterinary'""" ;
-    sc:featureList edam:operation_2409 ;
-    sc:name "VetCOT" ;
-    sc:url "http://vetcot.org/index.php/home/identification-and-verification-process/" .
-
-<https://bio.tools/ViDis> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3068,
-        edam:topic_3303,
-        edam:topic_3382 ;
-    sc:citation <https://doi.org/10.1089/CMB.2019.0238>,
-        "pubmed:31580745" ;
-    sc:description """A Platform for Constructing and Sharing of Medical Algorithms.
-
-The literature and the Internet provide different sources, in which medical community as well as patients can browse through medical algorithms. These algorithms are dispersed and use different formats of presentation. We present visualized diagnosis (ViDis), a web platform aimed to construction and sharing of graphical representations of medical algorithms in a single place and in a unified format. ViDis is accessible as a web application, which can run on an arbitrary platform with a modern web browser. The platform's user friendly interfaces allow the users with different backgrounds to construct, share, and browse through medical algorithms. Visualization of the algorithms can be created using a flowchart diagram notation that is commonly applied in the design of computer software and is very intuitive to use and understand.
-
-||| HOMEPAGE MISSING!""" ;
-    sc:featureList edam:operation_0337,
-        edam:operation_3096 ;
-    sc:name "ViDis" ;
-    sc:url "http://vidis.fri.uni-lj.si/" .
-
 <https://bio.tools/ViSEAGO> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0602,
         edam:topic_0659 ;
@@ -77968,7 +63197,7 @@ The literature and the Internet provide different sources, in which medical comm
     sc:url "https://bioconductor.org/packages/ViSEAGO" .
 
 <https://bio.tools/ViSiElse> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0092 ;
     sc:citation <https://doi.org/10.7287/PEERJ.PREPRINTS.27665V2> ;
     sc:description """An innovative visualization R package to ensure behavioral raw data reliability and transparency.
@@ -77979,40 +63208,8 @@ Background In recent years, the scientific community encouraged the use of raw d
     sc:name "ViSiElse" ;
     sc:url "https://cran.csiro.au/web/packages/ViSiElse/ViSiElse.pdf" .
 
-<https://bio.tools/ViSiElse_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0092,
-        edam:topic_3314,
-        edam:topic_3474 ;
-    sc:citation <https://doi.org/10.7287/PEERJ.PREPRINTS.27665V3> ;
-    sc:description """An innovative R-package to visualize raw behavioral data over time.
-
-The scientific community encourages the use of raw data graphs to improve the reliability and transparency of the results presented in articles. However, the current methods used to visualize raw data are limited to one or two numerical variables per graph and or small sample sizes. In the behavioral sciences, numerous variables must be plotted together in order to gain insight into the behavior in question. In this paper, we present ViSiElse, an R-package offering a new approach in the visualization of raw data. ViSiElse was developed with the open-source software R to visualize behavioral observations over time based on raw time data extracted from visually recorded sessions of experimental observations. ViSiElse gives a global overview of a process by creating a visualization of the timestamps for multiple actions and all participants into a single graph; individual or group behavior can then be easily assessed""" ;
-    sc:featureList edam:operation_0337,
-        edam:operation_3436 ;
-    sc:name "ViSiElse_autogenerated" ;
-    sc:url "https://cran.csiro.au/web/packages/ViSiElse/ViSiElse.pdf" .
-
-<https://bio.tools/ViVI> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0781,
-        edam:topic_3305,
-        edam:topic_3324,
-        edam:topic_3418,
-        edam:topic_3577 ;
-    sc:citation <https://doi.org/10.3892/ETM.2019.7948>,
-        "pmcid:PMC6766581",
-        "pubmed:31588214" ;
-    sc:description """An interview with Professor Barbara A. Rath, Co-founder and Chair of the Vienna Vaccine Safety Initiative.
-
-Vienna Vaccine Safety Initiative.
-
-Parents. Scientists. You. Let’s eradicate disease!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'Paediatric', 'Paediatric Virology', 'Advancing challenges Paediatric Virology', 'Vienna Vaccine'""" ;
-    sc:name "ViVI" ;
-    sc:url "http://www.vi-vi.org" .
-
 <https://bio.tools/ViVa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0625,
         edam:topic_0780 ;
@@ -78024,27 +63221,15 @@ Parents. Scientists. You. Let’s eradicate disease!.
     sc:name "ViVa" ;
     sc:url "http://plantsynbiolab.bse.vt.edu/ViVa" .
 
-<https://bio.tools/ViaTherapy> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3334,
-        edam:topic_3393,
-        edam:topic_3399 ;
-    sc:citation <https://doi.org/10.1136/BMJOQ-2018-000592>,
-        "pmcid:PMC6711438",
-        "pubmed:31523735" ;
-    sc:description "> MEDIUM CONFIDENCE! | > CORRECT NAME OF TOOL COULD ALSO BE 'Evidence-based practice on-the-go', 'rehabilitation' | using ViaTherapy as a tool to enhance clinical decision making in upper limb rehabilitation after stroke | Your browser does not support the video tag | International panel of researchers & clinicians | Saunderson Family Chair in Brain injury Research | ViaTherapy’s tailored questionnaire delivers only the best treatment options based on your patient’s motor impairment and time post-stroke | \"The post stroke arm rehabilitation algorithm within the ViaTherapy app help our team make multidisciplinary clinical decisions. The three key questions leads us as professionals in a quick and easy way through a structure of recommendations for treatments with a clear scope for benefits and dose of therapy.\" Jip F. Kamphuis MSc., Physical Therapist" ;
-    sc:featureList edam:operation_3435 ;
-    sc:name "ViaTherapy" ;
-    sc:url "http://www.viatherapy.org" .
-
 <https://bio.tools/Victor-clustering-comparison> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:description "VICTOR is an interactive and dependency-free visual analytics web application which allows the comparison and visualization of various clustering outputs." ;
     sc:name "VICTOR" ;
     sc:url "http://bib.fleming.gr:3838/VICTOR" .
 
 <https://bio.tools/VieClus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0128,
         edam:topic_3474 ;
@@ -78066,7 +63251,7 @@ VieClus - Vienna Graph Clustering is a memetic algorithm""" ;
     sc:url "http://vieclus.taa.univie.ac.at/" .
 
 <https://bio.tools/VikNGS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0625,
         edam:topic_3168 ;
@@ -78084,7 +63269,7 @@ Free document hosting provided by Read the Docs""" ;
     sc:url "https://vikngsdocs.readthedocs.io/en/latest/" .
 
 <https://bio.tools/VirBin> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0199,
         edam:topic_0625,
@@ -78102,7 +63287,7 @@ Free document hosting provided by Read the Docs""" ;
     sc:url "https://github.com/chjiao/VirBin" .
 
 <https://bio.tools/ViralPlaque> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_3382,
         edam:topic_3474 ;
@@ -78118,7 +63303,7 @@ Plaque assay has been used for a long time to determine infectious titers and ch
     sc:url "https://sourceforge.net/projects/viralplaque/" .
 
 <https://bio.tools/Vireo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0625,
         edam:topic_3170,
@@ -78134,7 +63319,7 @@ Plaque assay has been used for a long time to determine infectious titers and ch
     sc:url "https://github.com/single-cell-genetics/vireo" .
 
 <https://bio.tools/VirtualCytometry> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0749,
         edam:topic_2229 ;
@@ -78145,38 +63330,8 @@ Plaque assay has been used for a long time to determine infectious titers and ch
     sc:name "VirtualCytometry" ;
     sc:url "https://www.grnpedia.org/cytometry/" .
 
-<https://bio.tools/VisANT_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0602,
-        edam:topic_3407 ;
-    sc:citation <https://doi.org/10.1371/JOURNAL.PONE.0221620>,
-        "pmcid:PMC6715240",
-        "pubmed:31465473" ;
-    sc:description "> MEDIUM CONFIDENCE! | > NAME EQUAL TO (PUB. DIFFERENT) bio.tools/visant | A new grid- and modularity-based layout algorithm for complex biological networks | An integrative platform for network/pathway analysis" ;
-    sc:featureList edam:operation_0277,
-        edam:operation_3083,
-        edam:operation_3439 ;
-    sc:name "VisANT_autogenerated" ;
-    sc:url "http://www.visantnet.org" .
-
-<https://bio.tools/VisConnectome> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0634,
-        edam:topic_2815,
-        edam:topic_3382 ;
-    sc:citation <https://doi.org/10.7507/1001-5515.201803080>,
-        "pubmed:31631630" ;
-    sc:description """an independent and graph-theory based software for visualizing the human brain connectome].
-
-As a complex system, the topology of human's brain network has an important effect on further study of brain's structural and functional mechanism. Graph theory, a kind of sophisticated analytic strategies, is widely used for analyzing complex brain networks effectively and comparing difference of topological structure alteration in normal development and pathological condition. For the purpose of using this analysis methodology efficiently, it is necessary to develop graph-based visualization software. Thus, we developed VisConnectome, which displays analysis results of the brain network friendly and intuitively. It provides an original graphical user interface (GUI) including the tool window, tool bar and innovative double slider filter, brain region bar, runs in any Windows operating system and doesn't rely on any platform such as Matlab.
-
-||| HOMEPAGE MISSING!""" ;
-    sc:featureList edam:operation_0337,
-        edam:operation_3435,
-        edam:operation_3695 ;
-    sc:name "VisConnectome" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31631630" .
-
 <https://bio.tools/VisFeature> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTZ689>,
         "pubmed:31504195" ;
     sc:description "a stand-alone program for visualizing and analyzing statistical features of biological sequences | For Microsoft Windows platform, just download the VisFeature-win32-x64.zip package from https://github.com/wangjun1996/VisFeature/releases. Unpack it to your favorite location and then open VisFeature.exe | We have tested these codes on Windows10-64bit platform and Ubuntu 16.04.5 LTS platform. There is no guarantee that these codes can be compiled and executed on other platforms without modifications" ;
@@ -78187,10 +63342,10 @@ As a complex system, the topology of human's brain network has an important effe
 
 <https://bio.tools/VisR> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1916" ;
-            sc:name "Alignment" ;
-            sc:sameAs "http://edamontology.org/data_1916" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1916" ;
+            sc:encodingFormat "http://edamontology.org/format_3751" ;
+            sc:name "Alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0092 ;
     sc:citation <https://doi.org/10.1186/1471-2105-16-S11-S2> ;
@@ -78209,7 +63364,7 @@ As a complex system, the topology of human's brain network has an important effe
     sc:url "https://visrsoftware.github.io" .
 
 <https://bio.tools/VisioProt-MS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_2830,
         edam:topic_3520 ;
@@ -78223,7 +63378,7 @@ As a complex system, the topology of human's brain network has an important effe
     sc:url "https://masstools.ipbs.fr/mstools/visioprot-ms/" .
 
 <https://bio.tools/VizGVar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_2640,
         edam:topic_3512 ;
@@ -78238,22 +63393,8 @@ As a complex system, the topology of human's brain network has an important effe
     biotools:primaryContact "Allan Orozco-Solano",
         "Antonio Solano-Román" .
 
-<https://bio.tools/WAPPS-Hemo> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3277,
-        edam:topic_3318,
-        edam:topic_3375 ;
-    sc:citation <https://doi.org/10.1111/HAE.13882>,
-        "pubmed:31742831" ;
-    sc:description """Clinical application of Web Accessible Population Pharmacokinetic Service-Hemophilia (WAPPS-Hemo).
-
-BACKGROUND:Use of population pharmacokinetics (PopPK) to facilitate PK-informed prophylaxis in clinical practice has gained momentum among haemophilia providers due to the accessibility of tools such as the Web Accessible Population Pharmacokinetic Service-Hemophilia (WAPPS-Hemo) and availability of extended half-life (EHL) factor concentrates. It is unknown how clinicians implement PopPK. AIM:To investigate the evolution of PopPK use in clinical practice by comparing blood sampling strategies, patient features, and factor group between initial and recent periods of WAPPS-Hemo availability. METHODS:PK data for haemophilia A and haemophilia B patients from two time periods were extracted from the WAPPS-Hemo database: early availability (10 2015-09 2016) and recent use (10 2017-09 2018).
-
-||| HOMEPAGE MISSING!""" ;
-    sc:name "WAPPS-Hemo" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31742831" .
-
 <https://bio.tools/WASPS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0102,
         edam:topic_0798 ;
@@ -78266,7 +63407,7 @@ BACKGROUND:Use of population pharmacokinetics (PopPK) to facilitate PK-informed
     sc:url "https://archaea.i2bc.paris-saclay.fr/wasps/" .
 
 <https://bio.tools/WATCLUST> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0166,
         edam:topic_0176,
@@ -78289,7 +63430,7 @@ BACKGROUND:Use of population pharmacokinetics (PopPK) to facilitate PK-informed
         "Marcelo A. Marti" .
 
 <https://bio.tools/WAVES> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Bioinformatics portal",
         "Web API",
         "Web application",
@@ -78311,26 +63452,8 @@ BACKGROUND:Use of population pharmacokinetics (PopPK) to facilitate PK-informed
     sc:url "http://www.atgc-montpellier.fr/waves/" ;
     biotools:primaryContact "Vincent Lefort" .
 
-<https://bio.tools/WB-Pro> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3419,
-        edam:topic_3474 ;
-    sc:citation <https://doi.org/10.1037/PAS0000787>,
-        "pubmed:31829640" ;
-    sc:description """Creating a theoretically based multidimensional measure of well-being to advance theory, research, policy, and practice.
-
-Australian Catholic University (ACU).
-
-1. I feel free to do whatever I decide to do.
-
-2. I feel free to make my own choices.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'well-being profile'""" ;
-    sc:featureList edam:operation_3435 ;
-    sc:name "WB-Pro" ;
-    sc:url "https://ippe.acu.edu.au/research/research-instruments/wb-pro" .
-
 <https://bio.tools/WBCs-segmentation> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3344,
@@ -78346,16 +63469,8 @@ Australian Catholic University (ACU).
     sc:url "https://www.mathworks.com/matlabcentral/fileexchange/36634-an-efficient-technique-for-white-blood-cells-nuclei-automatic-segmentation" ;
     biotools:primaryContact "Mostafa M. A. Mohamed" .
 
-<https://bio.tools/WBMT> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3421 ;
-    sc:citation <https://doi.org/10.1016/J.HEMONC.2019.08.002>,
-        "pubmed:31449781" ;
-    sc:description "> MEDIUM CONFIDENCE! | > HOMEPAGE MISSING! | > CORRECT NAME OF TOOL COULD ALSO BE 'Worldwide Network Blood Marrow Transplantation recommendations establishing hematopoietic stem c ...', 'HSCT', 'countries', 'socioeconomic' | Worldwide Network for Blood and Marrow Transplantation (WBMT) recommendations for establishing a hematopoietic stem cell transplantation program in countries with limited resources (Part II) | The development of hematopoietic stem cell transplantation (HSCT) programs can face significant challenges in most developing countries because such endeavors must compete with other government health care priorities, including the delivery of basic services. While this is may be a limiting factor, these countries should prioritize development of the needed expertise to offer state of the art treatments including transplantation, by providing financial, technological, legal, ethical and other needed support" ;
-    sc:name "WBMT" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31449781" .
-
 <https://bio.tools/WBNPMD> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0659,
         edam:topic_2640 ;
@@ -78369,7 +63484,7 @@ Australian Catholic University (ACU).
     sc:url "https://github.com/Dicrop/WBNPMD" .
 
 <https://bio.tools/WENGAN> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_2815,
         edam:topic_3673 ;
@@ -78385,7 +63500,7 @@ Australian Catholic University (ACU).
     sc:url "https://github.com/adigenova/wengan" .
 
 <https://bio.tools/WGDdetector> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3170,
@@ -78404,7 +63519,7 @@ Australian Catholic University (ACU).
     biotools:primaryContact "Yongzhi Yang" .
 
 <https://bio.tools/WHISCY> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_3534 ;
@@ -78421,19 +63536,8 @@ Australian Catholic University (ACU).
     sc:url "https://bianca.science.uu.nl/whiscy/" ;
     biotools:primaryContact <http://orcid.org/0000-0001-7369-1322> .
 
-<https://bio.tools/WHSP-Net> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3382,
-        edam:topic_3474 ;
-    sc:citation <https://doi.org/10.3390/S19173784>,
-        "pmcid:PMC6749339",
-        "pubmed:31480461" ;
-    sc:description "> MEDIUM CONFIDENCE! | > HOMEPAGE MISSING! | A Weakly-Supervised Approach for 3D Hand Shape and Pose Recovery from a Single Depth Image | Hand shape and pose recovery is essential for many computer vision applications such as animation of a personalized hand mesh in a virtual environment. Although there are many hand pose estimation methods, only a few deep learning based algorithms target 3D hand shape and pose from a single RGB or depth image. Jointly estimating hand shape and pose is very challenging because none of the existing real benchmarks provides ground truth hand shape. For this reason, we propose a novel weakly-supervised approach for 3D hand shape and pose recovery (named WHSP-Net) from a single depth image by learning shapes from unlabeled real data and labeled synthetic data. To this end, we propose a novel framework which consists of three novel components" ;
-    sc:featureList edam:operation_3659 ;
-    sc:name "WHSP-Net" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31480461" .
-
 <https://bio.tools/WHdenovo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0621,
         edam:topic_3168 ;
@@ -78451,7 +63555,7 @@ A cost-effective approach to diploid assembly for single samples and trios. It i
     sc:url "https://github.com/shilpagarg/WHdenovo" .
 
 <https://bio.tools/WIT> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3168,
@@ -78470,7 +63574,7 @@ A cost-effective approach to diploid assembly for single samples and trios. It i
     biotools:primaryContact "Sanjeev Kumar" .
 
 <https://bio.tools/WITOD> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0637,
         edam:topic_0659,
@@ -78489,47 +63593,8 @@ Please copy the OTU Table and the rep_set.fna file into the same directory of wi
     sc:name "WITOD" ;
     sc:url "https://github.com/johncava/WITOD" .
 
-<https://bio.tools/WMFB> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_2269,
-        edam:topic_3068 ;
-    sc:citation <https://doi.org/10.1016/J.COMPBIOMED.2019.103468>,
-        "pubmed:31577964" ;
-    sc:description """Fetal heart rate baseline computation with a weighted median filter.
-
-Live review of baseline FHR methods.
-
-From Live review of baseline FHR methods.
-
-and hayden is their best chance It'Doug Ford s holistic Conservatives succeed in part In Ontari a good thing Jones bounced back with a good performance after a poor outing against Denver in Week 3 (eight catches for 118 yards and a TD on nine targets).
-
-Gabriel apparently is never around in most episodes and he he knows about the Miraculouses as shown in the episode Volpina where he has an entire book on the Miraculous and the Heroes/Villains that wield them as well as in the episode Simon Says where he finds an interest in both Cat Noire and Ladybug Miraculouses and even notices Adriens Ring {which in reality is actually his miraculous disguised in it ordinary inflatable form of art glides in keeping with s f phoenix s without his Kwami Plagg in it.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'FHR'""" ;
-    sc:featureList edam:operation_3192,
-        edam:operation_3695 ;
-    sc:license "GPL-3.0" ;
-    sc:name "WMFB" ;
-    sc:url "http://utsb.univ-catholille.fr/fhr-wmfb" .
-
-<https://bio.tools/WMGHMDA> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0602,
-        edam:topic_0634,
-        edam:topic_0749,
-        edam:topic_3407,
-        edam:topic_3697 ;
-    sc:citation <https://doi.org/10.1186/S12859-019-3066-0>,
-        "pmcid:PMC6824056",
-        "pubmed:31675979" ;
-    sc:description """a novel weighted meta-graph-based model for predicting human microbe-disease association on heterogeneous information network.
-
-BACKGROUND:An increasing number of biological and clinical evidences have indicated that the microorganisms significantly get involved in the pathological mechanism of extensive varieties of complex human diseases. Inferring potential related microbes for diseases can not only promote disease prevention, diagnosis and treatment, but also provide valuable information for drug development. Considering that experimental methods are expensive and time-consuming, developing computational methods is an alternative choice. However, most of existing methods are biased towards well-characterized diseases and microbes. Furthermore, existing computational methods are limited in predicting potential microbes for new diseases""" ;
-    sc:featureList edam:operation_3435,
-        edam:operation_3439 ;
-    sc:name "WMGHMDA" ;
-    sc:url "https://github.com/yahuilong/WMGHMDA" .
-
 <https://bio.tools/WPD> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3399 ;
     sc:citation <https://doi.org/10.15172/PNEU.2013.2/245>,
         "pmcid:PMC6707408",
@@ -78539,7 +63604,7 @@ BACKGROUND:An increasing number of biological and clinical evidences have indica
     sc:url "http://www.wpdk.ivi.int/" .
 
 <https://bio.tools/WPMIAS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0659,
         edam:topic_0749,
@@ -78557,7 +63622,7 @@ If you use WPMIAS, please cite this article: Yuhan Fei, Yiyang Mao, Chengji Shen
     sc:url "https://cbi.njau.edu.cn/WPMIAS/" .
 
 <https://bio.tools/WPTherml> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3314,
         edam:topic_3315 ;
@@ -78578,35 +63643,8 @@ WPTherml stands for William Paterson University’s tool for Thermal Energy and
     sc:name "WPTherml" ;
     sc:url "https://github.com/FoleyLab/wptherml" .
 
-<https://bio.tools/WSD> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0089,
-        edam:topic_0218,
-        edam:topic_3303,
-        edam:topic_3474 ;
-    sc:citation <https://doi.org/10.1186/S12859-019-3079-8>,
-        "pmcid:PMC6886160",
-        "pubmed:31787096" ;
-    sc:description """Biomedical word sense disambiguation with bidirectional long short-term memory and attention-based neural networks.
-
-Word Sense Disambiguation (WSD) Test Collection.
-
-Word Sense Disambiguation (WSD)Test Collection.
-
-Collaborations & Outside Resources.
-
-Evaluation of Word Sense Disambiguation methods (WSD) in the biomedical domain is difficult because the available resources are either too small or too focused on specific types of entities (e.g. diseases or genes). We have developed a method that can be used to automatically develop a WSD test collection using the Unified Medical Language System (UMLS) Metathesaurus and the manual MeSH indexing of MEDLINE.
-
-||| COMMON LINK WITH (PUB. & NAME DIFFERENT) bio.tools/ncbi_resources (NLM.NIH.GOV), bio.tools/genbank (NLM.NIH.GOV).
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'BiLSTM'""" ;
-    sc:featureList edam:operation_0335,
-        edam:operation_1812,
-        edam:operation_2422 ;
-    sc:name "WSD" ;
-    sc:url "https://wsd.nlm.nih.gov/collaboration.shtml" .
-
 <https://bio.tools/Wang-xiaoheng> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0154,
         edam:topic_0736 ;
@@ -78623,7 +63661,7 @@ Evaluation of Word Sense Disambiguation methods (WSD) in the biomedical domain i
     sc:url "https://github.com/Xiaoheng-Wang12/Wang-xiaoheng/tree/master" .
 
 <https://bio.tools/Wannier90> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0605,
         edam:topic_3314,
         edam:topic_3372 ;
@@ -78635,7 +63673,7 @@ Evaluation of Word Sense Disambiguation methods (WSD) in the biomedical domain i
     sc:url "http://aiida-wannier90.readthedocs.io" .
 
 <https://bio.tools/Warp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3077,
         edam:topic_3306,
         edam:topic_3316,
@@ -78653,19 +63691,8 @@ If you just want to use Warp, all tutorials and binaries can be found at http://
     sc:name "Warp" ;
     sc:url "http://github.com/cramerlab/warp" .
 
-<https://bio.tools/WavePacket> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0176,
-        edam:topic_3318 ;
-    sc:citation <https://doi.org/10.1002/JCC.26045>,
-        "pubmed:31411345" ;
-    sc:description "> MEDIUM CONFIDENCE! | > HOMEPAGE MISSING! | A Matlab package for numerical quantum dynamics. III. Quantum-classical simulations and surface hopping trajectories | WavePacket is an open-source program package for numerical simulations in quantum dynamics. Building on the previous Part I (Schmidt and Lorenz, Comput. Phys. Commun. 2017, 213, 223] and Part II (Schmidt and Hartmann, Comput. Phys. Commun. 2018, 228, 229] which dealt with quantum dynamics of closed and open systems, respectively, the present Part III adds fully classical and mixed quantum-classical propagation techniques to WavePacket. There classical phase-space densities are sampled by trajectories which follow (diabatic or adiabatic) potential energy surfaces. In the vicinity of (genuine or avoided) intersections of those surfaces, trajectories may switch between them" ;
-    sc:featureList edam:operation_0244,
-        edam:operation_0337 ;
-    sc:name "WavePacket" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31411345" .
-
 <https://bio.tools/WebAnno> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0218,
         edam:topic_0621,
         edam:topic_3474 ;
@@ -78678,21 +63705,8 @@ If you just want to use Warp, all tutorials and binaries can be found at http://
     sc:name "WebAnno" ;
     sc:url "http://webanno.github.io/webanno" .
 
-<https://bio.tools/WebGestalt_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0203,
-        edam:topic_0602,
-        edam:topic_3518 ;
-    sc:citation <https://doi.org/10.3892/MMR.2019.10522>,
-        "pmcid:PMC6691242",
-        "pubmed:31524257" ;
-    sc:description "> VERY_LOW CONFIDENCE! | > NAME EQUAL TO (PUB. DIFFERENT) bio.tools/webgestalt | > COMMON LINK WITH (PUB. & NAME DIFFERENT) bio.tools/webgestalt (WEBGESTALT.ORG/option.php) | > CORRECT NAME OF TOOL COULD ALSO BE 'DEGs', 'T2DM', 'limma' (bio.tools/limma), 'GSE20966' | Identification of core genes and pathways in type 2 diabetes mellitus by bioinformatics analysis | WebGestalt (WEB-based GEne SeT AnaLysis Toolkit) | WEB-based GEne SeT AnaLysis Toolkit | Translating gene lists into biological insights.. | WebGestalt (WEB-based Gene SeT AnaLysis Toolkit) is a functional enrichment analysis web tool, which has on average 26,000 unique users from 144 countries and territories per year according to Google Analytics. The WebGestalt 2005, WebGestalt 2013 and WebGestalt 2017 papers have been cited in more than 2,500 scientific papers according to Google Scholar" ;
-    sc:featureList edam:operation_2436,
-        edam:operation_3223 ;
-    sc:name "WebGestalt_autogenerated" ;
-    sc:url "http://www.webgestalt.org/option.php" .
-
 <https://bio.tools/WebMetabase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0154,
@@ -78713,7 +63727,7 @@ If you just want to use Warp, all tutorials and binaries can be found at http://
     sc:url "http://webmetabase.com:8182/WebMetabaseBioinformatics/" .
 
 <https://bio.tools/WebSpecmine> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0091,
@@ -78738,7 +63752,7 @@ If you just want to use Warp, all tutorials and binaries can be found at http://
     sc:url "https://webspecmine.bio.di.uminho.pt" .
 
 <https://bio.tools/Webina> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0209,
         edam:topic_2275 ;
@@ -78752,7 +63766,7 @@ If you just want to use Warp, all tutorials and binaries can be found at http://
     sc:url "http://durrantlab.com/webina" .
 
 <https://bio.tools/WellInverter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0749,
@@ -78774,18 +63788,8 @@ If you just want to use Warp, all tutorials and binaries can be found at http://
     biotools:primaryContact "Hidde de Jong",
         "Johannes Geiselmann" .
 
-<https://bio.tools/What-If_Tool> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0602,
-        edam:topic_0632,
-        edam:topic_3474 ;
-    sc:citation <https://doi.org/10.1109/TVCG.2019.2934619>,
-        "pubmed:31442996" ;
-    sc:description "Interactive Probing of Machine Learning Models | Building effective machine learning models means asking a lot of questions. Look for answers using the What-if Tool, an interactive visual interface designed to probe your models better | you could inspect a machine learning model," ;
-    sc:name "What-If Tool" ;
-    sc:url "https://pair-code.github.io/what-if-tool/" .
-
 <https://bio.tools/WheatCRISPR> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0780,
         edam:topic_3512,
@@ -78804,26 +63808,21 @@ BACKGROUND:CRISPR Cas9 gene editing has become a revolutionary technique for cro
 
 <https://bio.tools/WheatIS> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0968" ;
-            sc:name "Keyword" ;
-            sc:sameAs "http://edamontology.org/data_0968" ],
+            sc:additionalType "http://edamontology.org/data_0968" ;
+            sc:name "Keyword" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2353" ;
-            sc:name "Ontology data" ;
-            sc:sameAs "http://edamontology.org/data_2353" ] ;
+            sc:additionalType "http://edamontology.org/data_2353" ;
+            sc:name "Ontology data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0842" ;
-            sc:name "Identifier" ;
-            sc:sameAs "http://edamontology.org/data_0842" ],
+            sc:additionalType "http://edamontology.org/data_2093" ;
+            sc:name "Data reference" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2080" ;
-            sc:name "Database search results" ;
-            sc:sameAs "http://edamontology.org/data_2080" ],
+            sc:additionalType "http://edamontology.org/data_0842" ;
+            sc:name "Identifier" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2093" ;
-            sc:name "Data reference" ;
-            sc:sameAs "http://edamontology.org/data_2093" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2080" ;
+            sc:name "Database search results" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web API",
         "Web application",
@@ -78852,26 +63851,21 @@ The WheatIS search is an implementation of DataDiscovery.""" ;
 
 <https://bio.tools/WheatMine> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2353" ;
-            sc:name "Ontology data" ;
-            sc:sameAs "http://edamontology.org/data_2353" ],
+            sc:additionalType "http://edamontology.org/data_2353" ;
+            sc:name "Ontology data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ] ;
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:name "Sequence features" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ],
+            sc:additionalType "http://edamontology.org/data_3786" ;
+            sc:name "Query script" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3786" ;
-            sc:name "Query script" ;
-            sc:sameAs "http://edamontology.org/data_3786" ],
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:name "Sequence features" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3753" ;
-            sc:name "Over-representation data" ;
-            sc:sameAs "http://edamontology.org/data_3753" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3753" ;
+            sc:name "Over-representation data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application",
         "Web service" ;
@@ -78894,7 +63888,7 @@ The WheatIS search is an implementation of DataDiscovery.""" ;
     sc:url "https://urgi.versailles.inra.fr/WheatMine" .
 
 <https://bio.tools/When2Heat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3318 ;
     sc:citation <https://doi.org/10.1038/S41597-019-0199-Y>,
         "pmcid:PMC6773861",
@@ -78910,7 +63904,7 @@ This repository contains scripts that compile heat demand and COP time series fo
     sc:url "https://github.com/oruhnau/when2heat" .
 
 <https://bio.tools/Whisper_2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3168 ;
     sc:citation <https://doi.org/10.1101/2019.12.18.881292> ;
@@ -78924,7 +63918,7 @@ This repository contains scripts that compile heat demand and COP time series fo
     sc:url "https://github.com/refresh-bio/whisper" .
 
 <https://bio.tools/White-blood-cells-detection-differential-evolution> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -78944,7 +63938,7 @@ This repository contains scripts that compile heat demand and COP time series fo
     biotools:primaryContact "Erik" .
 
 <https://bio.tools/WiPP> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3172,
         edam:topic_3474 ;
@@ -78959,44 +63953,8 @@ This repository contains scripts that compile heat demand and COP time series fo
     sc:name "WiPP" ;
     sc:url "https://github.com/bihealth/WiPP" .
 
-<https://bio.tools/Wikidata_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0621,
-        edam:topic_0749,
-        edam:topic_2229,
-        edam:topic_3047,
-        edam:topic_3298 ;
-    sc:citation <https://doi.org/10.1101/799684> ;
-    sc:description """Wikidata as a FAIR knowledge graph for the life sciences.
-
-A Wikidata Python module integrating the MediaWiki API and the Wikidata SPARQL endpoint.
-
-Incorporate wikidata statements into phenomizer.
-
-Transcriptional activity of the promoter in different cell lines.
-
-Wikidata:WikiProject Molecular biology.
-
-The easiest way to install WikidataIntegrator is using pip or pip3. WikidataIntegrator supports python 3.6 and higher, hence the suggestion for pip3. If python2 is installed pip will lead to an error indicating missing dependencies.
-
-These statistics are based on bi-weekly Wikimedia snapshots.
-
-Copyright information:Taken from "CTCF binds the proximal exonic region of and inhibits its transcription"Nucleic Acids Research 2005;33(21):6850-6860.
-
-Jump to navigation Jump to search.
-
-||| NAME EQUAL TO (PUB. DIFFERENT) bio.tools/Wikidata.
-
-||| COMMON LINK WITH (PUB. & NAME DIFFERENT) bio.tools/Wikidata (WIKIDATA.ORG ; WIKIDATA.ORG/wiki/Wikidata:Database_download)""" ;
-    sc:featureList edam:operation_1812,
-        edam:operation_2422,
-        edam:operation_3096,
-        edam:operation_3695 ;
-    sc:license "MIT" ;
-    sc:name "Wikidata_autogenerated" ;
-    sc:url "https://www.wikidata.org" .
-
 <https://bio.tools/WiseNET> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3474 ;
     sc:citation <https://doi.org/10.1016/J.DIB.2019.104654>,
         "pmcid:PMC6838453",
@@ -79008,21 +63966,8 @@ Nowadays, camera networks are part of our every-day life environments, consequen
     sc:name "WiseNET" ;
     sc:url "https://wisenet.checksem.fr/" .
 
-<https://bio.tools/Wits_Transplant_Procurement> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0621,
-        edam:topic_3068,
-        edam:topic_3421 ;
-    sc:citation <https://doi.org/10.7196/SAMJ.2019.V109I9.14313>,
-        "pubmed:31635584" ;
-    sc:description """Increasing deceased organ donor numbers in Johannesburg, South Africa.
-
-In 2016, deceased-donor organ procurement at Wits Transplant, based at Wits Donald Gordon Medical Centre in Johannesburg, South Africa (SA), was in a state of crisis. As it is the largest-volume solid-organ transplant unit in SA, and as we aspire to provide transplant services of an international standard, the time to address our procurement practice had come. The number of deceased donors consented through our centre was very low, and we needed a radical change to improve our performance. This article describes the Wits Transplant Procurement Model - the result of our work to improve procurement at our centre. The model has two core phases, one to increase referrals and the other to improve our consent rates. Within these phases there are several initiatives. To improve referrals, the threefold approach of procurement management, acknowledgement and resource utilisation was developed""" ;
-    sc:featureList edam:operation_3454 ;
-    sc:name "Wits Transplant Procurement" ;
-    sc:url "http://www.dgmc.co.za/docs/Wits-Transplant-Procurement-Handbook.pdf" .
-
 <https://bio.tools/Wolbachia> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
         edam:topic_0621,
@@ -79037,7 +63982,7 @@ In 2016, deceased-donor organ procurement at Wits Transplant, based at Wits Dona
     sc:url "https://github.com/gerthmicha/wolbachia-mlst" .
 
 <https://bio.tools/WordCloudPlugin> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0128,
@@ -79058,47 +64003,8 @@ In 2016, deceased-donor organ procurement at Wits Transplant, based at Wits Dona
     sc:url "http://baderlab.org/Software/WordCloudPlugin" ;
     biotools:primaryContact "Layla Oesper" .
 
-<https://bio.tools/WorldMap> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0102,
-        edam:topic_0218,
-        edam:topic_3489 ;
-    sc:citation <https://doi.org/10.7287/PEERJ.PREPRINTS.2238V2>,
-        <https://doi.org/10.7287/PEERJ.PREPRINTS.2238V3>,
-        <https://doi.org/10.7287/PEERJ.PREPRINTS.2238V4>,
-        <https://doi.org/10.7287/PEERJ.PREPRINTS.2238V5> ;
-    sc:description """Implementing an open source spatio-temporal search platform for Spatial Data Infrastructures.
-
-Build your own mapping portal and publish it to the world or to just a few collaborators. WorldMap is open source software.
-
-||| COMMON LINK WITH (PUB. & NAME DIFFERENT) bio.tools/skat (HARVARD.EDU), bio.tools/pbat (HARVARD.EDU), bio.tools/made4 (HARVARD.EDU), bio.tools/rbcbook1 (HARVARD.EDU).
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'HHypermap', 'Hypermap HHypermap', 'OGC', 'CSW', 'SDI'""" ;
-    sc:featureList edam:operation_2421,
-        edam:operation_3760,
-        edam:operation_3891 ;
-    sc:name "WorldMap" ;
-    sc:url "http://worldmap.harvard.edu" .
-
-<https://bio.tools/WorldWind> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3077,
-        edam:topic_3489 ;
-    sc:citation <https://doi.org/10.7287/PEERJ.PREPRINTS.2139V2>,
-        <https://doi.org/10.7287/PEERJ.PREPRINTS.2139V3>,
-        <https://doi.org/10.7287/PEERJ.PREPRINTS.2139V4> ;
-    sc:description """virtual globe for an open smart city.
-
-In this paper, the open source framework NASA WorldWind is presented. NASA WorldWind comes with two versions. The Java version is well established in the market and has many customers. On the other side the new version, which is the Web version, Web WorldWind, is still at the dawn of development cycle, with many features implemented and already used in several applications, with a great future ahead. Moreover, some of the features available in the Web WorldWind are listed and a short comparison with Cesium library is provided. Additionally, an interesting application developed in the smart cities context with Web WorldWind is described.
-
-In this paper, the open source framework NASA WorldWind is presented. NASA WorldWind comes with two versions. The Java version is well established in the market and has many customers.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'Web WorldWind', 'NASA WorldWind', 'cities'""" ;
-    sc:name "WorldWind" ;
-    sc:url "https://doi.org/10.7287/PEERJ.PREPRINTS.2139V2" .
-
 <https://bio.tools/World_Cancer_Map> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_2640,
@@ -79119,7 +64025,7 @@ In this paper, the open source framework NASA WorldWind is presented. NASA World
     biotools:primaryContact "Yung-Po Liaw" .
 
 <https://bio.tools/WormBook> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_2830,
         edam:topic_3512 ;
@@ -79130,7 +64036,7 @@ In this paper, the open source framework NASA WorldWind is presented. NASA World
     sc:url "http://www.wormbook.org" .
 
 <https://bio.tools/WormBot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0621,
         edam:topic_0625,
@@ -79154,26 +64060,21 @@ This site contains links and information for building the WormBot, an open hardw
 
 <https://bio.tools/WormMine> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ],
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:name "Sequence features" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2353" ;
-            sc:name "Ontology data" ;
-            sc:sameAs "http://edamontology.org/data_2353" ] ;
+            sc:additionalType "http://edamontology.org/data_2353" ;
+            sc:name "Ontology data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3753" ;
-            sc:name "Over-representation data" ;
-            sc:sameAs "http://edamontology.org/data_3753" ],
+            sc:additionalType "http://edamontology.org/data_3753" ;
+            sc:name "Over-representation data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3786" ;
-            sc:name "Query script" ;
-            sc:sameAs "http://edamontology.org/data_3786" ],
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:name "Sequence features" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3786" ;
+            sc:name "Query script" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application",
         "Web service" ;
@@ -79197,7 +64098,7 @@ This site contains links and information for building the WormBot, an open hardw
     sc:url "http://intermine.wormbase.org/tools/wormmine/" .
 
 <https://bio.tools/WormQTL2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0602,
         edam:topic_0625 ;
@@ -79210,7 +64111,7 @@ This site contains links and information for building the WormBot, an open hardw
     sc:url "http://www.bioinformatics.nl/WormQTL2/" .
 
 <https://bio.tools/X2H> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3489 ;
     sc:citation <https://doi.org/10.1109/TCBB.2019.2915811>,
@@ -79233,7 +64134,7 @@ This site contains links and information for building the WormBot, an open hardw
         "Yongzhuang Liu" .
 
 <https://bio.tools/XAEM> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3170,
         edam:topic_3512 ;
@@ -79247,7 +64148,7 @@ This site contains links and information for building the WormBot, an open hardw
     sc:url "https://github.com/WenjiangDeng/XAEM" .
 
 <https://bio.tools/XCI> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0654,
         edam:topic_0659 ;
@@ -79262,7 +64163,7 @@ This site contains links and information for building the WormBot, an open hardw
     sc:url "http://dna.cs.miami.edu/3D-XCI/" .
 
 <https://bio.tools/XFlow> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
         edam:topic_3520 ;
@@ -79276,7 +64177,7 @@ This site contains links and information for building the WormBot, an open hardw
     sc:url "https://github.com/optimusmoose/jsms" .
 
 <https://bio.tools/XG-PseU> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3295 ;
     sc:citation <https://doi.org/10.1007/S00438-019-01600-9>,
         "pubmed:31392406" ;
@@ -79285,7 +64186,7 @@ This site contains links and information for building the WormBot, an open hardw
     sc:url "http://www.bioml.cn/" .
 
 <https://bio.tools/XGANDALF> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0611,
         edam:topic_2828,
         edam:topic_3448 ;
@@ -79298,7 +64199,7 @@ This site contains links and information for building the WormBot, an open hardw
     sc:url "https://stash.desy.de/users/gevorkov/repos/xgandalf/browse" .
 
 <https://bio.tools/XGBoost> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2640,
         edam:topic_3170,
@@ -79316,7 +64217,7 @@ This site contains links and information for building the WormBot, an open hardw
     sc:url "https://cran.r-project.org/web/packages/xgboost/" .
 
 <https://bio.tools/XIBD> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_2885,
@@ -79337,7 +64238,7 @@ This site contains links and information for building the WormBot, an open hardw
     biotools:primaryContact "Lyndal Henden" .
 
 <https://bio.tools/XIPP> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0593,
         edam:topic_3678 ;
@@ -79353,7 +64254,7 @@ Xipp (pronounced zip) is an NMR analysis software package created and supported
     sc:url "https://spin.niddk.nih.gov/dgarrett/Xipp/xipp.html" .
 
 <https://bio.tools/XL-mHG> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
         edam:topic_3678 ;
@@ -79367,21 +64268,8 @@ Xipp (pronounced zip) is an NMR analysis software package created and supported
     sc:name "XL-mHG" ;
     sc:url "https://github.com/flo-compbio/xlmhg" .
 
-<https://bio.tools/XMAn_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0121,
-        edam:topic_0154,
-        edam:topic_0199 ;
-    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTZ693>,
-        "pubmed:31539018" ;
-    sc:description "> MEDIUM CONFIDENCE! | > NAME (XMAn) SIMILAR TO (PUB. DIFFERENT) bio.tools/xman (xMAN) | > CORRECT NAME OF TOOL COULD ALSO BE 'XMAn v2' | database of Homo sapiens mutated peptides | This script eliminates the hits reported from protein identification tools (proteomics) without the mutated amino acid in the sequence | Protein Descriptions contains the descriptions of the hits and these need to include the short sequence from the XMAn.v2 headers. (e.g. GN=CDC42BPB MRCKB_HUMAN Serine/threonine-protein kinase MRCK beta:c_C3625A:p_L1209I:VGIIEGL:Missense) | A file in EXCEL format (.xlsx) containing any columns but 2 columns with the exact following names: Sequence and Protein Descriptions" ;
-    sc:featureList edam:operation_2929,
-        edam:operation_3643,
-        edam:operation_3767 ;
-    sc:name "XMAn_autogenerated" ;
-    sc:url "http://github.com/lazarlab/XMAnv2" .
-
 <https://bio.tools/XTRACT> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3067,
         edam:topic_3304,
         edam:topic_3337,
@@ -79403,26 +64291,21 @@ XTRACT can be used to automatically extract a set of carefully dissected tracts
 
 <https://bio.tools/XenMine> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ],
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:name "Sequence features" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2353" ;
-            sc:name "Ontology data" ;
-            sc:sameAs "http://edamontology.org/data_2353" ] ;
+            sc:additionalType "http://edamontology.org/data_2353" ;
+            sc:name "Ontology data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ],
+            sc:additionalType "http://edamontology.org/data_3786" ;
+            sc:name "Query script" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3753" ;
-            sc:name "Over-representation data" ;
-            sc:sameAs "http://edamontology.org/data_3753" ],
+            sc:additionalType "http://edamontology.org/data_3753" ;
+            sc:name "Over-representation data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3786" ;
-            sc:name "Query script" ;
-            sc:sameAs "http://edamontology.org/data_3786" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:name "Sequence features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application",
         "Web service" ;
@@ -79446,7 +64329,7 @@ XTRACT can be used to automatically extract a set of carefully dissected tracts
     sc:url "http://www.xenmine.org/xenmine" .
 
 <https://bio.tools/XenoCP> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_2640,
         edam:topic_3170,
@@ -79470,7 +64353,7 @@ Your web browser (Chrome 68) is out of date. Update your browser for more securi
     sc:url "https://pecan.stjude.cloud/permalink/xenocp" .
 
 <https://bio.tools/Xeva> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0208,
         edam:topic_2640,
@@ -79492,7 +64375,7 @@ Your web browser (Chrome 68) is out of date. Update your browser for more securi
     biotools:primaryContact "Benjamin Haibe-Kains" .
 
 <https://bio.tools/XitoSBML> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_2259,
         edam:topic_3382 ;
@@ -79513,7 +64396,7 @@ XitoSBML is an ImageJ plugin which creates a Spatial SBML model from segmented i
     sc:url "https://github.com/spatialsimulator/XitoSBML/" .
 
 <https://bio.tools/Xylella> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0632,
         edam:topic_0780,
         edam:topic_3168,
@@ -79526,7 +64409,7 @@ XitoSBML is an ImageJ plugin which creates a Spatial SBML model from segmented i
     sc:url "https://github.com/lfaino/xylella" .
 
 <https://bio.tools/YALFF> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0625,
         edam:topic_2885,
@@ -79546,7 +64429,7 @@ YALFF (Yet Another Lossy FASTQ Filter) is a smoother for FASTQ files which uses
     sc:url "https://github.com/yhhshb/yalff" .
 
 <https://bio.tools/YAPP> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_3168,
         edam:topic_3512 ;
@@ -79560,41 +64443,8 @@ YALFF (Yet Another Lossy FASTQ Filter) is a smoother for FASTQ files which uses
     sc:name "YAPP" ;
     sc:url "http://www.bioinformatics.org/yapp/cgi-bin/yapp.cgi" .
 
-<https://bio.tools/YCRH> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0749,
-        edam:topic_3305,
-        edam:topic_3419,
-        edam:topic_3420 ;
-    sc:citation <https://doi.org/10.17269/S41997-019-00254-9>,
-        "pubmed:31595419" ;
-    sc:description """promising practices for youth and adults working in partnership.
-
-SETTING:Canadian youth (aged 15-29 years) are more diverse, educated, connected and socially engaged than ever before. However, many face health-related challenges, including mental health problems (10-20%), substance use concerns (14%) and obesity (45%). INTERVENTION:The Young Canadians Roundtable on Health (YCRH) was created in 2013 to be Canada's youth voice on health. Supported by the Sandbox Project, this youth-led advisory works primarily virtually, leading advocacy projects and wide-ranging health initiatives. OUTCOMES:Youth and adult allies engaged in a participatory research evaluation of the YCRH, which was identified as a living laboratory, where youth could experiment with ideas and provide new perspectives on health issues.
-
-||| HOMEPAGE BROKEN!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'Young Canadians Roundtable Health', 'engagement', 'youth', 'youth-led'""" ;
-    sc:name "YCRH" ;
-    sc:url "http://sandboxproject.ca/ycrh-ebook/" .
-
-<https://bio.tools/YES-HR> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0108,
-        edam:topic_0610,
-        edam:topic_3418 ;
-    sc:citation <https://doi.org/10.1093/TBM/IBZ156>,
-        "pubmed:31746321" ;
-    sc:description """Adapting an evidence-based positive youth development intervention to prevent sexual and teen dating violence.
-
-Adapting evidence-based interventions (EBIs) guided by implementation science frameworks is a promising way to accelerate the translation of effective violence prevention in schools. School-based interventions offer an opportunity to reduce the risk of multiple forms of violence, including sexual violence (SV) and teen dating violence (TDV). EBIs in schools reach large populations of adolescents, including those underserved in other settings. Although specific SV TDV prevention programs exist, evaluations indicate limited effectiveness over time.
-
-||| HOMEPAGE BROKEN!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'YES-HR school-based', 'YES', 'TDV', 'frameworks'""" ;
-    sc:name "YES-HR" ;
-    sc:url "http://www.yes.sph.umich.edu" .
-
 <https://bio.tools/Yanagi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3308,
         edam:topic_3320 ;
@@ -79610,26 +64460,21 @@ Adapting evidence-based interventions (EBIs) guided by implementation science fr
 
 <https://bio.tools/YeastMine> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2353" ;
-            sc:name "Ontology data" ;
-            sc:sameAs "http://edamontology.org/data_2353" ],
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:name "Sequence features" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ] ;
+            sc:additionalType "http://edamontology.org/data_2353" ;
+            sc:name "Ontology data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3753" ;
-            sc:name "Over-representation data" ;
-            sc:sameAs "http://edamontology.org/data_3753" ],
+            sc:additionalType "http://edamontology.org/data_3753" ;
+            sc:name "Over-representation data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ],
+            sc:additionalType "http://edamontology.org/data_3786" ;
+            sc:name "Query script" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3786" ;
-            sc:name "Query script" ;
-            sc:sameAs "http://edamontology.org/data_3786" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:name "Sequence features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application",
         "Web service" ;
@@ -79653,7 +64498,7 @@ Adapting evidence-based interventions (EBIs) guided by implementation science fr
     sc:url "https://yeastmine.yeastgenome.org/yeastmine" .
 
 <https://bio.tools/YeastSpotter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3068,
         edam:topic_3382 ;
@@ -79673,7 +64518,7 @@ Adapting evidence-based interventions (EBIs) guided by implementation science fr
         "Alex Lu" .
 
 <https://bio.tools/Yersinia> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0632,
         edam:topic_3168,
@@ -79691,7 +64536,7 @@ Adapting evidence-based interventions (EBIs) guided by implementation science fr
     sc:url "https://bigsdb.pasteur.fr/yersinia" .
 
 <https://bio.tools/Yosshi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0130,
@@ -79715,7 +64560,7 @@ Adapting evidence-based interventions (EBIs) guided by implementation science fr
     biotools:primaryContact "Dmitry Suplatov" .
 
 <https://bio.tools/Yvis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0152,
@@ -79738,41 +64583,8 @@ Adapting evidence-based interventions (EBIs) guided by implementation science fr
     biotools:primaryContact <https://orcid.org/0000-0001-7776-8446>,
         "Liza F Felicori" .
 
-<https://bio.tools/ZIKAVID-Zika_virus_infection_database> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0602,
-        edam:topic_0749,
-        edam:topic_3512 ;
-    sc:citation <https://doi.org/10.1007/S13365-019-00799-Y>,
-        "pubmed:31512145" ;
-    sc:description "> CORRECT NAME OF TOOL COULD ALSO BE 'ZIKAVID', 'ZIKA Virus Infection Database' | a new platform to analyze the molecular impact of Zika virus infection | ZIKV is a database that has been manually developed and cured by Brazilian researchers, experts in the fields of microbial infection and host-pathogen interaction, molecular biology, proteomics and neurochemistry. Our goal is to gather all information on gene expression alterations at mRNA and/or protein level promoted by Zika virus infection in different host models. The… | ZIKV is a database that has been manually developed and cured by Brazilian researchers, experts in the fields of microbial infection and host-pathogen interaction, molecular biology, proteomics and neurochemistry | The database provides information on genes which expression was experimentally measured after ZIKV infection" ;
-    sc:featureList edam:operation_3431 ;
-    sc:name "ZIKAVID-Zika virus infection database" ;
-    sc:url "https://zikavid.org" .
-
-<https://bio.tools/ZODIAC_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0154,
-        edam:topic_0780,
-        edam:topic_3047,
-        edam:topic_3172 ;
-    sc:citation <https://doi.org/10.1101/842740> ;
-    sc:description """database-independent molecular formula annotation using Gibbs sampling reveals unknown small molecules.
-
-1 Abstract The confident high-throughput identification of small molecules remains one of the most challenging tasks in mass spectrometry-based metabolomics. SIRIUS has become a powerful tool for the interpretation of tandem mass spectra, and shows outstanding performance for identifying the molecular formula of a query compound, being the first step of structure identification. Nevertheless, the identification of both molecular formulas for large compounds above 500 Daltons and novel molecular formulas remains highly challenging. Here, we present ZODIAC, a network-based algorithm for the de novo estimation of molecular formulas.
-
-||| HOMEPAGE MISSING!.
-
-||| NAME (ZODIAC) SIMILAR TO (PUB. DIFFERENT) bio.tools/zodiac (Zodiac).
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'SIRIUS'""" ;
-    sc:featureList edam:operation_0224,
-        edam:operation_2238,
-        edam:operation_3801,
-        edam:operation_3803 ;
-    sc:name "ZODIAC_autogenerated" ;
-    sc:url "https://doi.org/10.1101/842740" .
-
 <https://bio.tools/ZebraSTM> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0611,
         edam:topic_2840,
@@ -79792,26 +64604,21 @@ Adapting evidence-based interventions (EBIs) guided by implementation science fr
 
 <https://bio.tools/ZebrafishMine> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2353" ;
-            sc:name "Ontology data" ;
-            sc:sameAs "http://edamontology.org/data_2353" ],
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:name "Sequence features" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ] ;
+            sc:additionalType "http://edamontology.org/data_2353" ;
+            sc:name "Ontology data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3753" ;
-            sc:name "Over-representation data" ;
-            sc:sameAs "http://edamontology.org/data_3753" ],
+            sc:additionalType "http://edamontology.org/data_3786" ;
+            sc:name "Query script" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3786" ;
-            sc:name "Query script" ;
-            sc:sameAs "http://edamontology.org/data_3786" ],
+            sc:additionalType "http://edamontology.org/data_3753" ;
+            sc:name "Over-representation data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:name "Sequence features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application",
         "Web service" ;
@@ -79836,41 +64643,13 @@ It currently includes updates of data from ZFIN, the zebrafish model organism da
     sc:url "http://zebrafishmine.org" .
 
 <https://bio.tools/Zebrafish_neuroanatomy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "Zebrafish is an online database of standardized Zebrafish (a marine vertebrate model) neuroanatomy, accessible via an interactive interface for 3D visualisation." ;
     sc:name "Zebrafish neuroanatomy" ;
     sc:url "https://zebrafish.tefor.net/#/home?_k=3p8igq" .
 
-<https://bio.tools/ZikaPLAN> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0781,
-        edam:topic_3305,
-        edam:topic_3324,
-        edam:topic_3334,
-        edam:topic_3400 ;
-    sc:citation <https://doi.org/10.1080/16549716.2019.1666566>,
-        "pmcid:PMC6818126",
-        "pubmed:31640505" ;
-    sc:description """addressing the knowledge gaps and working towards a research preparedness network in the Americas.
-
-From urgent response to long-term capacity.
-
-A global initiative to address research challenges posed by the Zika outbreak and build a sustainable response capacity in Latin America.
-
-Research on track and productive exchanges with Colombian partners at the annual ZikaPLAN consortium meeting.
-
-October 28, 2019 - The Universidad del Valle hosted the annual ZikaPLAN meeting October 21-22, convening over 60 consortium members in Cali, Colombia. Read more.
-
-We use cookies to track visits to our website, and we don't store any of your personal details. Find out more.
-
-The Global Health Network The Global Health Network.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'REDe'""" ;
-    sc:featureList edam:operation_3454 ;
-    sc:name "ZikaPLAN" ;
-    sc:url "https://zikaplan.tghn.org/" .
-
 <https://bio.tools/ZincBind> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web API",
         "Web application" ;
@@ -79894,7 +64673,7 @@ The Global Health Network The Global Health Network.
     biotools:primaryContact "Sam Ireland" .
 
 <https://bio.tools/Zirmi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_0769,
         edam:topic_3382 ;
@@ -79907,7 +64686,7 @@ The Global Health Network The Global Health Network.
     sc:url "https://github.com/ADParedes/Zirmi" .
 
 <https://bio.tools/Zombi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0084 ;
     sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTZ710>,
         "pubmed:31566657" ;
@@ -79919,7 +64698,7 @@ The Global Health Network The Global Health Network.
     sc:url "https://github.com/AADavin/ZOMBI/" .
 
 <https://bio.tools/ZooScatR> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_3452 ;
@@ -79938,7 +64717,7 @@ The Global Health Network The Global Health Network.
     biotools:primaryContact "Australian Antarctic Division" .
 
 <https://bio.tools/Zr-MOFs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2828,
         edam:topic_3489 ;
@@ -79952,7 +64731,7 @@ You can find more than 182 experimentally synthesized guest-free and disorder-fr
     sc:url "https://mofs-genomics.github.io/Zr-MOFs-Database" .
 
 <https://bio.tools/a-dago-fun> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation "pubmed:26476781" ;
@@ -79964,7 +64743,7 @@ You can find more than 182 experimentally synthesized guest-free and disorder-fr
     sc:url "http://web.cbio.uct.ac.za/ITGOM/adagofun/" .
 
 <https://bio.tools/a-game> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation "pubmed:29329522" ;
@@ -79976,8 +64755,27 @@ You can find more than 182 experimentally synthesized guest-free and disorder-fr
     sc:url "http://beaconlab.it/agame" ;
     biotools:primaryContact <https://orcid.org/0000-0002-6739-2657> .
 
+<https://bio.tools/a-hiot> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_2275,
+        edam:topic_3047,
+        edam:topic_3336,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1186/S13321-022-00630-7>,
+        "pmcid:PMC9306080",
+        "pubmed:35869511" ;
+    sc:description "A method that simultaneously identifies and optimizes hit/lead molecules by integrating chemical- and protein-space-driven architectures and stands for an automated-hit identification and optimization tool (A-HIOT)." ;
+    sc:featureList edam:operation_2422,
+        edam:operation_3935,
+        edam:operation_3938 ;
+    sc:license "Not licensed" ;
+    sc:name "A-HIOT" ;
+    sc:url "https://gitlab.com/neeraj-24/A-HIOT" .
+
 <https://bio.tools/a-itr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3315,
         edam:topic_3360,
@@ -79996,7 +64794,7 @@ You can find more than 182 experimentally synthesized guest-free and disorder-fr
     sc:url "https://github.com/menghaomiao/aitr" .
 
 <https://bio.tools/a-madman> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0203 ;
@@ -80016,7 +64814,7 @@ You can find more than 182 experimentally synthesized guest-free and disorder-fr
         "Stefania Bortoluzzi" .
 
 <https://bio.tools/a-o-tool> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3170,
@@ -80038,8 +64836,43 @@ You can find more than 182 experimentally synthesized guest-free and disorder-fr
     sc:url "https://github.com/Julia-F-S/a-o-tool" ;
     biotools:primaryContact <https://orcid.org/0000-0002-2585-3830> .
 
+<https://bio.tools/a-pass> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Workflow" ;
+    sc:applicationSubCategory edam:topic_0769,
+        edam:topic_3304,
+        edam:topic_3444 ;
+    sc:citation <https://doi.org/10.1088/1741-2552/AC83F2>,
+        "pubmed:35878599" ;
+    sc:description "A pipeline to automatically process and analyze simultaneously acquired EEG-fMRI data for sleep research" ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "A-PASS" ;
+    sc:url "https://github.com/guangyuanzou/A-PASS" .
+
+<https://bio.tools/a-prot> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workflow" ;
+    sc:applicationSubCategory edam:topic_0082,
+        edam:topic_0123,
+        edam:topic_2814,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1186/S12859-022-04628-8>,
+        "pmcid:PMC8925138",
+        "pubmed:35296230" ;
+    sc:description "Protein structure modeling using MSA transformer" ;
+    sc:featureList edam:operation_0267,
+        edam:operation_0272,
+        edam:operation_0303,
+        edam:operation_0477,
+        edam:operation_0492 ;
+    sc:license "CC-BY-NC-SA-4.0" ;
+    sc:name "A-Prot" ;
+    sc:url "https://github.com/arontier/A_Prot_Paper" .
+
 <https://bio.tools/a2a> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3068,
         edam:topic_3303,
@@ -80055,24 +64888,63 @@ You can find more than 182 experimentally synthesized guest-free and disorder-fr
     sc:softwareHelp <https://a2a.csiro.au/benchmarking/about> ;
     sc:url "https://a2a.csiro.au/benchmarking/resources" .
 
+<https://bio.tools/a2sign> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0632,
+        edam:topic_2229,
+        edam:topic_3170,
+        edam:topic_3308,
+        edam:topic_3518 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAB773>,
+        "pubmed:34788798" ;
+    sc:description "A2Sign (Agnostic Algorithms for Signatures) a universal method for identifying molecular signatures from transcriptomic datasets prior to cell-type deconvolution." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_3629,
+        edam:operation_3802 ;
+    sc:license "MIT" ;
+    sc:name "A2Sign" ;
+    sc:url "https://github.com/paulfogel/A2SIGN" ;
+    biotools:primaryContact "Franck Augé" .
+
+<https://bio.tools/a3d-database> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0080,
+        edam:topic_0121,
+        edam:topic_0130,
+        edam:topic_0166,
+        edam:topic_0736 ;
+    sc:citation <https://doi.org/10.1101/2021.11.17.468872> ;
+    sc:description "A3D Database is a database for structure-based protein aggregation predictions for the human proteome" ;
+    sc:featureList edam:operation_0408,
+        edam:operation_0409,
+        edam:operation_0474,
+        edam:operation_3436,
+        edam:operation_4008 ;
+    sc:isAccessibleForFree true ;
+    sc:name "A3D Database" ;
+    sc:url "http://biocomp.chem.uw.edu.pl/A3D2/hproteome" .
+
 <https://bio.tools/a4> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3113" ;
-            sc:name "Sample annotation" ;
-            sc:sameAs "http://edamontology.org/data_3113" ],
+            sc:additionalType "http://edamontology.org/data_3113" ;
+            sc:encodingFormat "http://edamontology.org/format_3751" ;
+            sc:name "Sample annotation" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3111" ;
-            sc:name "Processed microarray data" ;
-            sc:sameAs "http://edamontology.org/data_3111" ] ;
+            sc:additionalType "http://edamontology.org/data_3111" ;
+            sc:encodingFormat "http://edamontology.org/format_2056" ;
+            sc:name "Processed microarray data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3111" ;
-            sc:name "Processed microarray data" ;
-            sc:sameAs "http://edamontology.org/data_3111" ],
+            sc:additionalType "http://edamontology.org/data_3111" ;
+            sc:encodingFormat "http://edamontology.org/format_2056" ;
+            sc:name "Processed microarray data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3113" ;
-            sc:name "Sample annotation" ;
-            sc:sameAs "http://edamontology.org/data_3113" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3113" ;
+            sc:encodingFormat "http://edamontology.org/format_3751" ;
+            sc:name "Sample annotation" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -80095,7 +64967,7 @@ You can find more than 182 experimentally synthesized guest-free and disorder-fr
         "Willem Ligtenberg" .
 
 <https://bio.tools/a4base> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -80118,7 +64990,7 @@ You can find more than 182 experimentally synthesized guest-free and disorder-fr
         "Willem Ligtenberg" .
 
 <https://bio.tools/a4classif> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3473,
@@ -80139,7 +65011,7 @@ You can find more than 182 experimentally synthesized guest-free and disorder-fr
         "Willem Ligtenberg" .
 
 <https://bio.tools/a4core> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3071,
@@ -80160,7 +65032,7 @@ You can find more than 182 experimentally synthesized guest-free and disorder-fr
         "Willem Ligtenberg" .
 
 <https://bio.tools/a4preproc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0089,
@@ -80181,7 +65053,7 @@ You can find more than 182 experimentally synthesized guest-free and disorder-fr
         "Willem Ligtenberg" .
 
 <https://bio.tools/a4reporting> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_1775,
@@ -80202,7 +65074,7 @@ You can find more than 182 experimentally synthesized guest-free and disorder-fr
         "Willem Ligtenberg" .
 
 <https://bio.tools/a5> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196 ;
     sc:citation <https://doi.org/10.1371/journal.pone.0042304> ;
@@ -80217,7 +65089,7 @@ You can find more than 182 experimentally synthesized guest-free and disorder-fr
     biotools:primaryContact "Aaron E. Darling" .
 
 <https://bio.tools/a5-miseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196 ;
     sc:citation "pubmed:25338718" ;
@@ -80233,14 +65105,13 @@ You can find more than 182 experimentally synthesized guest-free and disorder-fr
 
 <https://bio.tools/aCLImatise> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2526" ;
-            sc:name "Text data" ;
-            sc:sameAs "http://edamontology.org/data_2526" ] ;
+            sc:additionalType "http://edamontology.org/data_2526" ;
+            sc:name "Text data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2526" ;
-            sc:name "Text data" ;
-            sc:sameAs "http://edamontology.org/data_2526" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2526" ;
+            sc:encodingFormat "http://edamontology.org/format_3857" ;
+            sc:name "Text data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0091 ;
     sc:description "aCLImatise is a Python library and command-line utility for parsing the help output of a command-line tool and then outputting a description of the tool in a more structured format, for example a Common Workflow Language tool definition." ;
@@ -80254,7 +65125,7 @@ You can find more than 182 experimentally synthesized guest-free and disorder-fr
     sc:url "https://github.com/aCLImatise/CliHelpParser" .
 
 <https://bio.tools/aFold> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3308,
@@ -80278,7 +65149,7 @@ You can find more than 182 experimentally synthesized guest-free and disorder-fr
         "Wentao Yang" .
 
 <https://bio.tools/a_purva> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1089/cmb.2009.0196> ;
@@ -80291,31 +65162,27 @@ You can find more than 182 experimentally synthesized guest-free and disorder-fr
     sc:softwareVersion "1" ;
     sc:url "http://tools.genouest.org/data/apurva/manual.pdf" .
 
-<https://bio.tools/aa2nt> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0080,
-        edam:topic_0121,
+<https://bio.tools/aa-score> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0128,
         edam:topic_0154,
-        edam:topic_3168 ;
-    sc:citation <https://doi.org/10.7287/PEERJ.PREPRINTS.27856V2> ;
-    sc:description """MATLAB software for extracting protein name and sequence information from FASTA formatted proteome file.
-
-Convert amino acid sequence to nucleotide sequence.
-
-This MATLAB function converts an amino acid sequence, specified by SeqAA, to a nucleotide sequence, returned in SeqNT, using the standard genetic code.
-
-SeqNT = aa2nt(SeqAA, ...'GeneticCode', GeneticCodeValue, ...).
-
-SeqNT = aa2nt(SeqAA, ...'PropertyName', PropertyValue, ...) calls aa2nt with optional properties that use property name/property value pairs. You can specify one or more properties in any order. Each PropertyName must be enclosed in single quotation marks and is case insensitive. These property name/property value pairs are as follows:.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'fastaread', 'molweight', 'MATLAB', 'enmeshed'""" ;
-    sc:featureList edam:operation_0233,
-        edam:operation_0398,
-        edam:operation_1812 ;
-    sc:name "aa2nt" ;
-    sc:url "https://www.mathworks.com/help/bioinfo/ref/aa2nt.html" .
+        edam:topic_2275,
+        edam:topic_3336 ;
+    sc:citation <https://doi.org/10.1021/ACS.JCIM.1C01537>,
+        "pubmed:35452230" ;
+    sc:description "A command line tool for protein-ligand binding affinity prediction" ;
+    sc:featureList edam:operation_0394,
+        edam:operation_1839,
+        edam:operation_3938 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-2.0" ;
+    sc:name "AA-Score" ;
+    sc:operatingSystem "Linux" ;
+    sc:url "https://github.com/xundrug/AA-Score-Tool" .
 
 <https://bio.tools/aa_stat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -80334,7 +65201,7 @@ SeqNT = aa2nt(SeqAA, ...'PropertyName', PropertyValue, ...) calls aa2nt with opt
     sc:url "https://github.com/SimpleNumber/aa_stat" .
 
 <https://bio.tools/aacompident> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -80351,7 +65218,7 @@ SeqNT = aa2nt(SeqAA, ...'PropertyName', PropertyValue, ...) calls aa2nt with opt
     biotools:primaryContact "ExPASy helpdesk" .
 
 <https://bio.tools/aacompsim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -80368,7 +65235,7 @@ SeqNT = aa2nt(SeqAA, ...'PropertyName', PropertyValue, ...) calls aa2nt with opt
     biotools:primaryContact "ExPASy helpdesk" .
 
 <https://bio.tools/aacon> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:description "Set of tools implementing different conservation scores." ;
@@ -80381,8 +65248,25 @@ SeqNT = aa2nt(SeqAA, ...'PropertyName', PropertyValue, ...) calls aa2nt with opt
     sc:softwareVersion "1" ;
     sc:url "http://www.compbio.dundee.ac.uk/aacon/" .
 
+<https://bio.tools/aadg> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_3384,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1109/TMI.2022.3193146>,
+        "pubmed:35862336" ;
+    sc:description "Automated Augmentation for Domain Generalization (AADG) is a data manipulation based domain generalization method that can sample data augmentation policies that generate domains and diversify the training set from an appropriate search space." ;
+    sc:featureList edam:operation_2428,
+        edam:operation_3799 ;
+    sc:license "Not licensed" ;
+    sc:name "AADG" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/CRazorback/AADG" .
+
 <https://bio.tools/aagatlas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_2640,
@@ -80400,10 +65284,9 @@ SeqNT = aa2nt(SeqAA, ...'PropertyName', PropertyValue, ...) calls aa2nt with opt
 
 <https://bio.tools/aaindexextract> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1501" ;
-            sc:name "Amino acid index" ;
-            sc:sameAs "http://edamontology.org/data_1501" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1501" ;
+            sc:name "Amino acid index" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -80433,7 +65316,7 @@ SeqNT = aa2nt(SeqAA, ...'PropertyName', PropertyValue, ...) calls aa2nt with opt
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/aaindexextract.html" .
 
 <https://bio.tools/aaindexloc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0140 ;
     sc:citation "pubmed:18163182" ;
@@ -80448,7 +65331,7 @@ SeqNT = aa2nt(SeqAA, ...'PropertyName', PropertyValue, ...) calls aa2nt with opt
     sc:url "http://aaindexloc.bii.a-star.edu.sg/" .
 
 <https://bio.tools/aasra> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0097,
@@ -80468,7 +65351,7 @@ SeqNT = aa2nt(SeqAA, ...'PropertyName', PropertyValue, ...) calls aa2nt with opt
     sc:url "https://github.com/biogramming/AASRA" .
 
 <https://bio.tools/aassites> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2885 ;
     sc:citation "pubmed:21992029" ;
@@ -80483,14 +65366,14 @@ SeqNT = aa2nt(SeqAA, ...'PropertyName', PropertyValue, ...) calls aa2nt with opt
 
 <https://bio.tools/aastretch> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:encodingFormat "http://edamontology.org/format_1219" ;
+            sc:name "Sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0874" ;
-            sc:name "Comparison matrix" ;
-            sc:sameAs "http://edamontology.org/data_0874" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0874" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Comparison matrix" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -80509,8 +65392,31 @@ SeqNT = aa2nt(SeqAA, ...'PropertyName', PropertyValue, ...) calls aa2nt with opt
     sc:url "http://bioserver2.sbsc.unifi.it/bioinfo/aastretch/index.html" ;
     biotools:primaryContact "Matteo Ramazzotti" .
 
+<https://bio.tools/ab-cov> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0199,
+        edam:topic_0219,
+        edam:topic_2830 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC439>,
+        "pubmed:35771624" ;
+    sc:description "A curated database for binding affinity and neutralization profiles of coronavirus related antibodies." ;
+    sc:featureList edam:operation_0331,
+        edam:operation_0337,
+        edam:operation_0416 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "Ab-CoV" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://web.iitm.ac.in/bioinfo2/ab-cov/help> ;
+    sc:url "https://web.iitm.ac.in/bioinfo2/ab-cov/home" .
+
 <https://bio.tools/ab-ligity> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0605,
@@ -80528,7 +65434,7 @@ SeqNT = aa2nt(SeqAA, ...'PropertyName', PropertyValue, ...) calls aa2nt with opt
     biotools:primaryContact <https://orcid.org/0000-0003-1388-2252> .
 
 <https://bio.tools/ab12phylo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0084,
@@ -80549,7 +65455,7 @@ SeqNT = aa2nt(SeqAA, ...'PropertyName', PropertyValue, ...) calls aa2nt with opt
     biotools:primaryContact <https://orcid.org/0000-0002-3444-6954> .
 
 <https://bio.tools/abacus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btt697> ;
@@ -80567,7 +65473,7 @@ SeqNT = aa2nt(SeqAA, ...'PropertyName', PropertyValue, ...) calls aa2nt with opt
     biotools:primaryContact "Barbara Di Camillo" .
 
 <https://bio.tools/abaenrichment> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -80587,7 +65493,7 @@ SeqNT = aa2nt(SeqAA, ...'PropertyName', PropertyValue, ...) calls aa2nt with opt
     biotools:primaryContact "Steffi Grote" .
 
 <https://bio.tools/abalonedb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3293,
@@ -80603,22 +65509,22 @@ SeqNT = aa2nt(SeqAA, ...'PropertyName', PropertyValue, ...) calls aa2nt with opt
 
 <https://bio.tools/abarray> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2337" ;
-            sc:name "Resource metadata" ;
-            sc:sameAs "http://edamontology.org/data_2337" ],
+            sc:additionalType "http://edamontology.org/data_2337" ;
+            sc:encodingFormat "http://edamontology.org/format_3751" ;
+            sc:name "Resource metadata" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Gene expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ] ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_3751" ;
+            sc:name "Gene expression data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0950" ;
-            sc:name "Mathematical model" ;
-            sc:sameAs "http://edamontology.org/data_0950" ],
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3617" ;
+            sc:name "Plot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0950" ;
+            sc:encodingFormat "http://edamontology.org/format_2032" ;
+            sc:name "Mathematical model" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -80643,7 +65549,7 @@ SeqNT = aa2nt(SeqAA, ...'PropertyName', PropertyValue, ...) calls aa2nt with opt
     biotools:primaryContact "Yongming Andrew Sun" .
 
 <https://bio.tools/abasy-atlas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0114,
         edam:topic_0204,
         edam:topic_0602,
@@ -80658,8 +65564,23 @@ SeqNT = aa2nt(SeqAA, ...'PropertyName', PropertyValue, ...) calls aa2nt with opt
     sc:name "Abasy Atlas" ;
     sc:url "https://abasy.ccg.unam.mx/" .
 
+<https://bio.tools/abawaca> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_3174 ;
+    sc:citation <https://doi.org/10.1038/nature14486> ;
+    sc:description "abawaca (A Binning Algorithm Without A Cool Acronym) is a binning program that can take advantage of different types of information such as differential coverage and DNA signature." ;
+    sc:featureList edam:operation_3798 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "abawaca" ;
+    sc:operatingSystem "Linux",
+        "Mac" ;
+    sc:softwareHelp <https://bioconda.github.io/recipes/abawaca/README.html> ;
+    sc:url "https://github.com/CK7/abawaca" .
+
 <https://bio.tools/abba> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3168,
@@ -80677,7 +65598,7 @@ SeqNT = aa2nt(SeqAA, ...'PropertyName', PropertyValue, ...) calls aa2nt with opt
     sc:url "http://www.biofacebook.com/?p=250" .
 
 <https://bio.tools/abc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3169 ;
@@ -80691,7 +65612,7 @@ SeqNT = aa2nt(SeqAA, ...'PropertyName', PropertyValue, ...) calls aa2nt with opt
     sc:url "https://github.com/mlupien/ABC/" .
 
 <https://bio.tools/abc-finder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0128,
@@ -80710,7 +65631,7 @@ ABC-Finder i.e., A Docker-based package for the identification of ABC proteins i
     sc:url "http://abc-finder.osdd.jnu.ac.in" .
 
 <https://bio.tools/abc-gwas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_2640,
@@ -80728,8 +65649,49 @@ ABC-Finder i.e., A Docker-based package for the identification of ABC proteins i
     sc:name "ABC-GWAS" ;
     sc:url "http://education.knoweng.org/abc-gwas/" .
 
+<https://bio.tools/abc4pwm> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Workflow" ;
+    sc:applicationSubCategory edam:topic_0128,
+        edam:topic_0749,
+        edam:topic_3169,
+        edam:topic_3170,
+        edam:topic_3179 ;
+    sc:citation <https://doi.org/10.1186/S12859-022-04615-Z>,
+        "pmcid:PMC8896320",
+        "pubmed:35240993" ;
+    sc:description "abc4pwm is a software tool for clustering of pwms, classficiation of pwms to their DNA binding Domain, motif search, and other supportive modules." ;
+    sc:featureList edam:operation_0238,
+        edam:operation_0239,
+        edam:operation_3192,
+        edam:operation_3432 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "abc4pwm" ;
+    sc:operatingSystem "Linux",
+        "Mac" ;
+    sc:url "https://omer0191.github.io/abc4pwm/" .
+
+<https://bio.tools/abc_portal> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_3308,
+        edam:topic_3400,
+        edam:topic_3408 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAC646>,
+        "pubmed:35920330" ;
+    sc:description "ABC portal provides web-based interactive analysis modules, especially a comprehensive cell-cell communication analysis and disease-related gene signature analysis." ;
+    sc:license "Not licensed" ;
+    sc:name "ABC portal" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://abc.sklehabc.com" .
+
 <https://bio.tools/abcd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Web application" ;
     sc:applicationSubCategory edam:topic_3056 ;
@@ -80748,7 +65710,7 @@ ABC-Finder i.e., A Docker-based package for the identification of ABC proteins i
     sc:url "https://yunliweb.its.unc.edu/AbCD.html" .
 
 <https://bio.tools/abcd-alzheimer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0659,
@@ -80763,7 +65725,7 @@ ABC-Finder i.e., A Docker-based package for the identification of ABC proteins i
     sc:url "http://www.bioinfoindia.org/abcd" .
 
 <https://bio.tools/abckb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script",
         "Workbench" ;
     sc:applicationSubCategory edam:topic_0218,
@@ -80780,7 +65742,7 @@ ABC-Finder i.e., A Docker-based package for the identification of ABC proteins i
     sc:url "https://github.com/atrautm1/ABCkb" .
 
 <https://bio.tools/abcmodeller> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3473,
@@ -80798,7 +65760,7 @@ In order to extract useful information from a huge amount of biological data now
     sc:url "http://lishuyan.lzu.edu.cn/ABCModeller.rar" .
 
 <https://bio.tools/abcnet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3361 ;
@@ -80812,7 +65774,7 @@ In order to extract useful information from a huge amount of biological data now
     sc:url "https://git.io/AdelaiDet" .
 
 <https://bio.tools/abcpred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0121,
@@ -80825,12 +65787,27 @@ In order to extract useful information from a huge amount of biological data now
     sc:operatingSystem "Linux",
         "Mac",
         "Windows" ;
-    sc:softwareHelp <http://crdd.osdd.net/raghava//abcpred/ABC_help.html> ;
-    sc:url "http://crdd.osdd.net/raghava//abcpred/" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/abcpred/ABC_help.html> ;
+    sc:url "http://webs.iiitd.edu.in/raghava/abcpred/" ;
     biotools:primaryContact "Gajendra P.S. Raghava" .
 
+<https://bio.tools/abcpred-inhibit> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0091,
+        edam:topic_0634,
+        edam:topic_3047,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1007/S11030-021-10292-6>,
+        "pubmed:34609711" ;
+    sc:description "ABCpred is a webserver for the discovery of acetyl- and butyryl-cholinesterase inhibitors." ;
+    sc:isAccessibleForFree true ;
+    sc:name "ABCpred" ;
+    sc:url "http://codes.bio/abcpred/" ;
+    biotools:primaryContact <https://orcid.org/0000-0003-1040-663X> .
+
 <https://bio.tools/abcrpred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0154,
@@ -80848,8 +65825,27 @@ In order to extract useful information from a huge amount of biological data now
         "Windows" ;
     sc:url "http://webs.iiitd.edu.in/raghava/abcrpred/" .
 
+<https://bio.tools/abcstats> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_3172,
+        edam:topic_3315,
+        edam:topic_3407 ;
+    sc:citation <https://doi.org/10.1021/ACS.ANALCHEM.2C00503>,
+        "pubmed:35657711" ;
+    sc:description "ABCstats is an R package for metabolomics data transformation. Adaptive Box-Cox (ABC) transformation improves the data normality for statistical analysis." ;
+    sc:featureList edam:operation_3435 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "ABCstats" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/HuanLab/ABCstats" .
+
 <https://bio.tools/abdesign> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0130,
         edam:topic_0196,
@@ -80868,7 +65864,7 @@ In order to extract useful information from a huge amount of biological data now
     sc:url "https://github.com/Fleishman-Lab/AbDesign_for_enzymes" .
 
 <https://bio.tools/abdesigner3d> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_2814,
         edam:topic_2830,
@@ -80884,16 +65880,32 @@ In order to extract useful information from a huge amount of biological data now
     sc:url "http://sysbio.chula.ac.th/AbDesigner3D/" ;
     biotools:primaryContact "Trairak Pisitkun" .
 
+<https://bio.tools/abdiver> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0199,
+        edam:topic_2830,
+        edam:topic_3168,
+        edam:topic_3374 ;
+    sc:citation <https://doi.org/10.1093/bioinformatics/btac151> ;
+    sc:description "AbDiver is a tool to explore the natural antibody landscape to aid therapeutic design." ;
+    sc:featureList edam:operation_2421,
+        edam:operation_2422,
+        edam:operation_3431 ;
+    sc:name "AbDiver" ;
+    sc:softwareHelp <http://research.naturalantibody.com/abdiverdocumentation> ;
+    sc:url "http://research.naturalantibody.com/abdiver" ;
+    biotools:primaryContact "Konrad Krawczyk" .
+
 <https://bio.tools/abeem_solver> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1463" ;
-            sc:name "Small molecule structure" ;
-            sc:sameAs "http://edamontology.org/data_1463" ] ;
+            sc:additionalType "http://edamontology.org/data_1463" ;
+            sc:name "Small molecule structure" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1917" ;
-            sc:name "Atomic property" ;
-            sc:sameAs "http://edamontology.org/data_1917" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1917" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Atomic property" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2258,
         edam:topic_3332 ;
@@ -80913,27 +65925,8 @@ In order to extract useful information from a huge amount of biological data now
     sc:url "http://ncbr.muni.cz/~svobodova/eem_abeem" ;
     biotools:primaryContact "Radka Svobodová Vařeková" .
 
-<https://bio.tools/abemaciclib_indirubin_hymenialdisine> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0176,
-        edam:topic_2229,
-        edam:topic_2275 ;
-    sc:citation <https://doi.org/10.2174/2589977511666191018180001>,
-        "pubmed:31875784" ;
-    sc:description """Molecular Dynamics Mechanisms of the Inhibitory Effects of Abemaciclib, Hymenialdisine, and Indirubin on CDK-6.
-
-BACKGROUND:Cyclin-Dependent Kinases-6 (CDK-6) is a serine threonine protein kinase with regular activity in the cell cycle. Some inhibitors, such as abemaciclib, hymenialdisine, and indirubin, cause cell arrest by decreasing its activity. OBJECTIVES:The purpose of this study was to evaluate the Molecular Dynamic (MD) effects of abemaciclib, hymenialdisine, and indirubin on the structure of CDK-6. METHODS:The PDB file of CDK-6 was obtained from the Protein Data Bank (http: www.rcsb.org). After the simulation of CDK-6 in the Gromacs software, 200 stages of molecular docking were run on CDK-6 in the presence of the inhibitors using AutoDock 4.2.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'abemaciclib hymenialdisine indirubin', 'abemaciclib hymenialdisine indirubin inhibitors', 'hymenialdisine indirubin', 'abemaciclib hymenialdisine'""" ;
-    sc:featureList edam:operation_0478,
-        edam:operation_2415,
-        edam:operation_2476 ;
-    sc:name "abemaciclib indirubin hymenialdisine" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31875784" .
-
 <https://bio.tools/aber-owl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0219 ;
@@ -80951,7 +65944,7 @@ BACKGROUND:Cyclin-Dependent Kinases-6 (CDK-6) is a serine threonine protein kina
     biotools:primaryContact "Robert Hoehndorf" .
 
 <https://bio.tools/abi2link> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0625 ;
@@ -80961,7 +65954,7 @@ BACKGROUND:Cyclin-Dependent Kinases-6 (CDK-6) is a serine threonine protein kina
     sc:url "http://www.imbs-luebeck.de/imbs/node/40" .
 
 <https://bio.tools/abi2xml> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654 ;
     sc:description "abi2xml is a command line utility to convert an abi trace file to an xml file. Abi trace files contain DNA sequence data and are e.g. produced by ABI PRISM TM 377 DNA sequencers." ;
@@ -80976,18 +65969,15 @@ BACKGROUND:Cyclin-Dependent Kinases-6 (CDK-6) is a serine threonine protein kina
 
 <https://bio.tools/abiview> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ] ;
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:name "Sequence trace" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2168" ;
-            sc:name "Sequence trace image" ;
-            sc:sameAs "http://edamontology.org/data_2168" ],
+            sc:additionalType "http://edamontology.org/data_2168" ;
+            sc:name "Sequence trace image" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2887" ;
-            sc:name "Nucleic acid sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2887" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2887" ;
+            sc:name "Nucleic acid sequence record" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0092 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -81018,7 +66008,7 @@ BACKGROUND:Cyclin-Dependent Kinases-6 (CDK-6) is a serine threonine protein kina
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/abiview.html" .
 
 <https://bio.tools/abiview_ws_husar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0092 ;
     sc:description "This tool reads in an ABI sequence trace file and graphically displays the results." ;
@@ -81032,7 +66022,7 @@ BACKGROUND:Cyclin-Dependent Kinases-6 (CDK-6) is a serine threonine protein kina
     sc:url "http://genius.embnet.dkfz-heidelberg.de/menu/hobit/embdoc/abiview.html" .
 
 <https://bio.tools/abm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0621,
@@ -81051,7 +66041,7 @@ BACKGROUND:Cyclin-Dependent Kinases-6 (CDK-6) is a serine threonine protein kina
     sc:url "https://github.com/sashahafner/ABM" .
 
 <https://bio.tools/abm-tki> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2259,
@@ -81069,7 +66059,7 @@ BACKGROUND:Cyclin-Dependent Kinases-6 (CDK-6) is a serine threonine protein kina
     biotools:primaryContact "Xiaoqiang Sun" .
 
 <https://bio.tools/abmapper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0102 ;
@@ -81087,7 +66077,7 @@ BACKGROUND:Cyclin-Dependent Kinases-6 (CDK-6) is a serine threonine protein kina
     biotools:primaryContact "Hong Kong Bioinformatics Center" .
 
 <https://bio.tools/abmr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0610,
@@ -81104,7 +66094,7 @@ Agent-based modeling (ABM) shows promise for animal movement studies. However, a
     sc:url "https://github.com/bgoch5/abmr/" .
 
 <https://bio.tools/abner> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3047,
         edam:topic_3070 ;
@@ -81119,22 +66109,8 @@ Agent-based modeling (ABM) shows promise for animal movement studies. However, a
     sc:softwareVersion "1.5" ;
     sc:url "http://pages.cs.wisc.edu/~bsettles/abner/" .
 
-<https://bio.tools/abolishing_activity> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0102,
-        edam:topic_0203,
-        edam:topic_2885 ;
-    sc:citation <https://doi.org/10.1038/S41598-019-49935-Y>,
-        "pmcid:PMC6754452",
-        "pubmed:31541133" ;
-    sc:description "> LOW CONFIDENCE! | > CORRECT NAME OF TOOL COULD ALSO BE 'associated autoimmunity', 'assumed substantially' | Evaluation of the functional effects of genetic variants‒missense and nonsense SNPs, indels and copy number variations‒in the gene encoding human deoxyribonuclease I potentially implicated in autoimmunity | Export custom datasets from Ensembl with this data-mining tool | Search our genomes for your DNA or protein sequence" ;
-    sc:featureList edam:operation_0484,
-        edam:operation_0488,
-        edam:operation_3196 ;
-    sc:name "abolishing activity" ;
-    sc:url "https://asia.ensembl.org" .
-
 <https://bio.tools/aboria> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0176 ;
     sc:citation <https://doi.org/10.1016/j.softx.2017.07.002> ;
@@ -81149,7 +66125,7 @@ Agent-based modeling (ABM) shows promise for animal movement studies. However, a
     biotools:primaryContact "Martin Robinson" .
 
 <https://bio.tools/abpoa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0769 ;
@@ -81163,7 +66139,7 @@ Agent-based modeling (ABM) shows promise for animal movement studies. However, a
     sc:url "https://github.com/yangao07/abPOA" .
 
 <https://bio.tools/abra> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0196,
@@ -81181,7 +66157,7 @@ Agent-based modeling (ABM) shows promise for animal movement studies. However, a
     sc:url "https://github.com/mozack/abra" .
 
 <https://bio.tools/abrainvis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3384,
         edam:topic_3444,
         edam:topic_3452 ;
@@ -81197,22 +66173,19 @@ Agent-based modeling (ABM) shows promise for animal movement studies. However, a
 
 <https://bio.tools/abs> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2299" ;
-            sc:name "Gene name" ;
-            sc:sameAs "http://edamontology.org/data_2299" ],
+            sc:additionalType "http://edamontology.org/data_2299" ;
+            sc:name "Gene name" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2741" ;
-            sc:name "ABS ID" ;
-            sc:sameAs "http://edamontology.org/data_2741" ],
+            sc:additionalType "http://edamontology.org/data_1077" ;
+            sc:name "Transcription factor identifier" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1077" ;
-            sc:name "Transcription factor identifier" ;
-            sc:sameAs "http://edamontology.org/data_1077" ] ;
+            sc:additionalType "http://edamontology.org/data_2741" ;
+            sc:name "ABS ID" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1276" ;
-            sc:name "Nucleic acid features" ;
-            sc:sameAs "http://edamontology.org/data_1276" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1276" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Nucleic acid features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0749 ;
     sc:citation <https://doi.org/10.1093/nar/gkj116> ;
@@ -81228,7 +66201,7 @@ Agent-based modeling (ABM) shows promise for animal movement studies. However, a
     sc:url "http://genome.imim.es/datasets/abs2005/" .
 
 <https://bio.tools/abs-scan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_2275 ;
@@ -81245,7 +66218,7 @@ Agent-based modeling (ABM) shows promise for animal movement studies. However, a
     biotools:primaryContact "Nagasuma Chandra" .
 
 <https://bio.tools/absim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2830,
         edam:topic_3297,
@@ -81264,7 +66237,7 @@ Agent-based modeling (ABM) shows promise for animal movement studies. However, a
     biotools:primaryContact "Alexander Yermanos" .
 
 <https://bio.tools/absolurate> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0634,
@@ -81281,7 +66254,7 @@ Agent-based modeling (ABM) shows promise for animal movement studies. However, a
     sc:url "https://web.iitm.ac.in/bioinfo2/absolurate-pred/index.html" .
 
 <https://bio.tools/absolute-comparison-analysis-affymetrix> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3374 ;
@@ -81297,18 +66270,18 @@ Agent-based modeling (ABM) shows promise for animal movement studies. However, a
 
 <https://bio.tools/absseq> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Gene expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ] ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_2032" ;
+            sc:name "Gene expression data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0950" ;
-            sc:name "Mathematical model" ;
-            sc:sameAs "http://edamontology.org/data_0950" ],
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3617" ;
+            sc:name "Plot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0950" ;
+            sc:encodingFormat "http://edamontology.org/format_2032" ;
+            sc:name "Mathematical model" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library",
         "Plug-in" ;
@@ -81335,7 +66308,7 @@ Agent-based modeling (ABM) shows promise for animal movement studies. However, a
     biotools:primaryContact "Wentao Yang" .
 
 <https://bio.tools/abstcal> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3305,
@@ -81351,14 +66324,14 @@ Agent-based modeling (ABM) shows promise for animal movement studies. However, a
 
 <https://bio.tools/abyss> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3497" ;
-            sc:name "DNA sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_3497" ] ;
+            sc:additionalType "http://edamontology.org/data_3497" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "DNA sequence (raw)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0925" ;
-            sc:name "Sequence assembly" ;
-            sc:sameAs "http://edamontology.org/data_0925" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0925" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence assembly" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196 ;
     sc:author "Shaun Jackman" ;
@@ -81378,7 +66351,7 @@ Agent-based modeling (ABM) shows promise for animal movement studies. However, a
     biotools:primaryContact "Shaun Jackman" .
 
 <https://bio.tools/ac-caps> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_0659,
         edam:topic_3295,
@@ -81395,8 +66368,31 @@ Agent-based modeling (ABM) shows promise for animal movement studies. However, a
     sc:operatingSystem "Windows" ;
     sc:url "https://github.com/JinmiaoS/AC-Caps" .
 
+<https://bio.tools/ac-pcoa> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_3170,
+        edam:topic_3305,
+        edam:topic_3512,
+        edam:topic_3673,
+        edam:topic_3697 ;
+    sc:citation <https://doi.org/10.1371/JOURNAL.PCBI.1010184>,
+        "pmcid:PMC9278763",
+        "pubmed:35830390" ;
+    sc:description "Adjustment for Confounding factors using Principal Coordinate Analysis (AC-PCoA) is a R package that adjust for confounding factors using principal coordinate analysis." ;
+    sc:featureList edam:operation_2939,
+        edam:operation_3891,
+        edam:operation_3935,
+        edam:operation_3960 ;
+    sc:license "Not licensed" ;
+    sc:name "AC-PCoA" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/YuWang28/acPCoA" .
+
 <https://bio.tools/ac2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0121,
@@ -81412,7 +66408,7 @@ Agent-based modeling (ABM) shows promise for animal movement studies. However, a
     sc:url "https://github.com/cobilab/ac2" .
 
 <https://bio.tools/aca> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3318,
         edam:topic_3382 ;
@@ -81426,7 +66422,7 @@ Agent-based modeling (ABM) shows promise for animal movement studies. However, a
     sc:url "https://github.com/juntang-zhuang/torch-ACA" .
 
 <https://bio.tools/accel-align> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0102,
@@ -81442,8 +66438,19 @@ Accel-Align does base-to-base alignment by default.""" ;
     sc:name "Accel-Align" ;
     sc:url "https://github.com/raja-appuswamy/accel-align-release" .
 
+<https://bio.tools/acconet> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_3382 ;
+    sc:citation <https://doi.org/10.1109/TCYB.2022.3162945>,
+        "pubmed:35417367" ;
+    sc:description "A adjacent context coordination network (ACCoNet) to explore the coordination of adjacent features in an encoder-decoder architecture for RSI-SOD." ;
+    sc:license "Not licensed" ;
+    sc:name "ACCoNet" ;
+    sc:url "https://github.com/MathLee/ACCoNet" .
+
 <https://bio.tools/accucopy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3673,
@@ -81456,7 +66463,7 @@ Accel-Align does base-to-base alignment by default.""" ;
     sc:url "https://www.yfish.org/display/PUB/Accucopy" .
 
 <https://bio.tools/accuenhancer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_2229,
@@ -81474,7 +66481,7 @@ Enhancers are one class of the regulatory elements that have been shown to act a
     sc:url "https://github.com/callsobing/accuEnhancer" .
 
 <https://bio.tools/acd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3370,
         edam:topic_3524 ;
@@ -81489,7 +66496,7 @@ Enhancers are one class of the regulatory elements that have been shown to act a
     sc:url "http://www.acdlabs.com/resources/freeware/colsel/" .
 
 <https://bio.tools/acdc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -81519,7 +66526,7 @@ Enhancers are one class of the regulatory elements that have been shown to act a
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/acdc.html" .
 
 <https://bio.tools/acdc_cell> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3056 ;
@@ -81535,14 +66542,14 @@ Enhancers are one class of the regulatory elements that have been shown to act a
 
 <https://bio.tools/acdc_estimation> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0925" ;
-            sc:name "Sequence assembly" ;
-            sc:sameAs "http://edamontology.org/data_0925" ] ;
+            sc:additionalType "http://edamontology.org/data_0925" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence assembly" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0091 ;
@@ -81560,7 +66567,7 @@ Enhancers are one class of the regulatory elements that have been shown to act a
     biotools:primaryContact "Markus Lux" .
 
 <https://bio.tools/acde> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -81581,7 +66588,7 @@ Enhancers are one class of the regulatory elements that have been shown to act a
     biotools:primaryContact "Juan Pablo Acosta" .
 
 <https://bio.tools/acdpretty> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -81611,7 +66618,7 @@ Enhancers are one class of the regulatory elements that have been shown to act a
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/acdpretty.html" .
 
 <https://bio.tools/acdtable> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -81641,7 +66648,7 @@ Enhancers are one class of the regulatory elements that have been shown to act a
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/acdtable.html" .
 
 <https://bio.tools/acdtool> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2269 ;
     sc:description "Web-server for the generic analysis of large data sets of counts." ;
@@ -81649,7 +66656,7 @@ Enhancers are one class of the regulatory elements that have been shown to act a
     sc:url "http://www.igs.cnrs-mrs.fr/acdtool/" .
 
 <https://bio.tools/acdtrace> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -81679,7 +66686,7 @@ Enhancers are one class of the regulatory elements that have been shown to act a
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/acdtrace.html" .
 
 <https://bio.tools/acdvalid> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -81709,7 +66716,7 @@ Enhancers are one class of the regulatory elements that have been shown to act a
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/acdvalid.html" .
 
 <https://bio.tools/ace> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3168 ;
@@ -81723,7 +66730,7 @@ Enhancers are one class of the regulatory elements that have been shown to act a
     sc:url "https://github.com/sheikhizadeh/ACE/" .
 
 <https://bio.tools/ace-molecule> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3047,
         edam:topic_3314,
         edam:topic_3372 ;
@@ -81736,7 +66743,7 @@ Enhancers are one class of the regulatory elements that have been shown to act a
     sc:url "https://gitlab.com/aceteam.kaist/ACE-Molecule" .
 
 <https://bio.tools/ace2-netlas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0659,
@@ -81752,7 +66759,7 @@ Enhancers are one class of the regulatory elements that have been shown to act a
     sc:url "https://gpwhiz.github.io/ACE2Netlas/" .
 
 <https://bio.tools/ace_gene> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654 ;
@@ -81768,7 +66775,7 @@ Enhancers are one class of the regulatory elements that have been shown to act a
     sc:url "http://www.bioinformatics.org/project/?group_id=39" .
 
 <https://bio.tools/ace_insect> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3170,
@@ -81788,7 +66795,7 @@ Enhancers are one class of the regulatory elements that have been shown to act a
         "Jiapeng Luo" .
 
 <https://bio.tools/aceapi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3063,
@@ -81807,7 +66814,7 @@ Enhancers are one class of the regulatory elements that have been shown to act a
     biotools:primaryContact "Alison Callahan" .
 
 <https://bio.tools/aceinhibpkpd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2259,
         edam:topic_3315,
@@ -81823,7 +66830,7 @@ Enhancers are one class of the regulatory elements that have been shown to act a
     biotools:primaryContact "Ashlee N. Ford Versypt" .
 
 <https://bio.tools/acela> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0218,
@@ -81844,7 +66851,7 @@ Enhancers are one class of the regulatory elements that have been shown to act a
     biotools:primaryContact "Yoshimasa Tsuruoka" .
 
 <https://bio.tools/acep> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0154,
@@ -81864,7 +66871,7 @@ Enhancers are one class of the regulatory elements that have been shown to act a
     sc:url "https://github.com/Fuhaoyi/ACEP" .
 
 <https://bio.tools/aceparser> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196 ;
     sc:description "AceParser: Parse an Ace file (Phred/Phrap output) into a tab-delimited assembly alignment file. Options to include embedded annotation from multiple sources." ;
@@ -81879,7 +66886,7 @@ Enhancers are one class of the regulatory elements that have been shown to act a
     sc:url "http://www.personal.psu.edu/jhm10/Vera/SoftwareC.html" .
 
 <https://bio.tools/aces-conservation> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0769,
@@ -81905,114 +66912,96 @@ Generates BLAST hits against each of the reference genomes, a multiple sequence
 
 <https://bio.tools/aceview> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1026" ;
-            sc:name "Gene symbol" ;
-            sc:sameAs "http://edamontology.org/data_1026" ],
+            sc:additionalType "http://edamontology.org/data_1045" ;
+            sc:name "Species name" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1045" ;
-            sc:name "Species name" ;
-            sc:sameAs "http://edamontology.org/data_1045" ],
+            sc:additionalType "http://edamontology.org/data_1045" ;
+            sc:name "Species name" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1045" ;
-            sc:name "Species name" ;
-            sc:sameAs "http://edamontology.org/data_1045" ],
+            sc:additionalType "http://edamontology.org/data_1045" ;
+            sc:name "Species name" ],
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-            sc:identifier "http://edamontology.org/data_1045" ;
-            sc:name "Species name" ;
-            sc:sameAs "http://edamontology.org/data_1045" ],
+            sc:additionalType "http://edamontology.org/data_1026" ;
+            sc:name "Gene symbol" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1026" ;
-            sc:name "Gene symbol" ;
-            sc:sameAs "http://edamontology.org/data_1026" ],
+            sc:additionalType "http://edamontology.org/data_1026" ;
+            sc:name "Gene symbol" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1045" ;
-            sc:name "Species name" ;
-            sc:sameAs "http://edamontology.org/data_1045" ],
+            sc:additionalType "http://edamontology.org/data_1026" ;
+            sc:name "Gene symbol" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1045" ;
-            sc:name "Species name" ;
-            sc:sameAs "http://edamontology.org/data_1045" ],
+            sc:additionalType "http://edamontology.org/data_1045" ;
+            sc:name "Species name" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1045" ;
-            sc:name "Species name" ;
-            sc:sameAs "http://edamontology.org/data_1045" ],
+            sc:additionalType "http://edamontology.org/data_2704" ;
+            sc:name "Clone ID (IMAGE)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1027" ;
-            sc:name "Gene ID (NCBI)" ;
-            sc:sameAs "http://edamontology.org/data_1027" ],
+            sc:additionalType "http://edamontology.org/data_1045" ;
+            sc:name "Species name" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1045" ;
-            sc:name "Species name" ;
-            sc:sameAs "http://edamontology.org/data_1045" ],
+            sc:additionalType "http://edamontology.org/data_1045" ;
+            sc:name "Species name" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2803" ;
-            sc:name "Clone ID (RefSeq)" ;
-            sc:sameAs "http://edamontology.org/data_2803" ],
+            sc:additionalType "http://edamontology.org/data_1045" ;
+            sc:name "Species name" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1026" ;
-            sc:name "Gene symbol" ;
-            sc:sameAs "http://edamontology.org/data_1026" ],
+            sc:additionalType "http://edamontology.org/data_1027" ;
+            sc:name "Gene ID (NCBI)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2704" ;
-            sc:name "Clone ID (IMAGE)" ;
-            sc:sameAs "http://edamontology.org/data_2704" ],
+            sc:additionalType "http://edamontology.org/data_2292" ;
+            sc:name "GenBank accession" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1045" ;
-            sc:name "Species name" ;
-            sc:sameAs "http://edamontology.org/data_1045" ],
+            sc:additionalType "http://edamontology.org/data_2803" ;
+            sc:name "Clone ID (RefSeq)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2292" ;
-            sc:name "GenBank accession" ;
-            sc:sameAs "http://edamontology.org/data_2292" ],
+            sc:additionalType "http://edamontology.org/data_1026" ;
+            sc:name "Gene symbol" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1045" ;
-            sc:name "Species name" ;
-            sc:sameAs "http://edamontology.org/data_1045" ],
+            sc:additionalType "http://edamontology.org/data_1026" ;
+            sc:name "Gene symbol" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1026" ;
-            sc:name "Gene symbol" ;
-            sc:sameAs "http://edamontology.org/data_1026" ],
+            sc:additionalType "http://edamontology.org/data_1045" ;
+            sc:name "Species name" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1026" ;
-            sc:name "Gene symbol" ;
-            sc:sameAs "http://edamontology.org/data_1026" ] ;
+            sc:additionalType "http://edamontology.org/data_1045" ;
+            sc:name "Species name" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0916" ;
-            sc:name "Gene report" ;
-            sc:sameAs "http://edamontology.org/data_0916" ],
+            sc:additionalType "http://edamontology.org/data_0916" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Gene report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0916" ;
-            sc:name "Gene report" ;
-            sc:sameAs "http://edamontology.org/data_0916" ],
+            sc:additionalType "http://edamontology.org/data_0916" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Gene report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0916" ;
-            sc:name "Gene report" ;
-            sc:sameAs "http://edamontology.org/data_0916" ],
+            sc:additionalType "http://edamontology.org/data_0916" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Gene report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1276" ;
-            sc:name "Nucleic acid features" ;
-            sc:sameAs "http://edamontology.org/data_1276" ],
+            sc:additionalType "http://edamontology.org/data_1276" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Nucleic acid features" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0916" ;
-            sc:name "Gene report" ;
-            sc:sameAs "http://edamontology.org/data_0916" ],
+            sc:additionalType "http://edamontology.org/data_3134" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Gene transcript report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3134" ;
-            sc:name "Gene transcript report" ;
-            sc:sameAs "http://edamontology.org/data_3134" ],
+            sc:additionalType "http://edamontology.org/data_0916" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Gene report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0916" ;
-            sc:name "Gene report" ;
-            sc:sameAs "http://edamontology.org/data_0916" ],
+            sc:additionalType "http://edamontology.org/data_0916" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Gene report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1276" ;
-            sc:name "Nucleic acid features" ;
-            sc:sameAs "http://edamontology.org/data_1276" ],
+            sc:additionalType "http://edamontology.org/data_1276" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Nucleic acid features" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0916" ;
-            sc:name "Gene report" ;
-            sc:sameAs "http://edamontology.org/data_0916" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0916" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Gene report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0623,
         edam:topic_3512 ;
@@ -82030,7 +67019,7 @@ Generates BLAST hits against each of the reference genomes, a multiple sequence
     sc:url "http://www.ncbi.nlm.nih.gov/IEB/Research/Acembly/" .
 
 <https://bio.tools/acg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0157,
         edam:topic_3056 ;
@@ -82046,7 +67035,7 @@ Generates BLAST hits against each of the reference genomes, a multiple sequence
     biotools:primaryContact "Brendan O'Fallon" .
 
 <https://bio.tools/acgh> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0622,
@@ -82066,7 +67055,7 @@ Generates BLAST hits against each of the reference genomes, a multiple sequence
     biotools:primaryContact "Peter Dimitrov" .
 
 <https://bio.tools/acid> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0203,
@@ -82082,8 +67071,27 @@ Generates BLAST hits against each of the reference genomes, a multiple sequence
     sc:name "ACID" ;
     sc:url "http://bioinfo.thep.lu.se/acid.html" .
 
+<https://bio.tools/acidbio> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Suite" ;
+    sc:applicationSubCategory edam:topic_0769 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC327>,
+        "pmcid:PMC9237710",
+        "pubmed:35575355" ;
+    sc:description "Acidbio a system for automated testing and certification of bioinformatics file format interoperability." ;
+    sc:featureList edam:operation_0335,
+        edam:operation_0336,
+        edam:operation_1812,
+        edam:operation_3216,
+        edam:operation_3431 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-2.0" ;
+    sc:name "Acidbio" ;
+    sc:url "https://github.com/hoffmangroup/acidbio" .
+
 <https://bio.tools/aclame> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0623,
@@ -82104,7 +67112,7 @@ Generates BLAST hits against each of the reference genomes, a multiple sequence
     biotools:primaryContact "The ACLAME team" .
 
 <https://bio.tools/acme> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0160,
@@ -82126,7 +67134,7 @@ Generates BLAST hits against each of the reference genomes, a multiple sequence
     biotools:primaryContact <http://orcid.org/0000-0002-8991-6458> .
 
 <https://bio.tools/acms> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_2275 ;
@@ -82141,7 +67149,7 @@ Generates BLAST hits against each of the reference genomes, a multiple sequence
     sc:url "http://bibiserv2.cebitec.uni-bielefeld.de/acms" .
 
 <https://bio.tools/acnpd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0202,
@@ -82159,7 +67167,7 @@ ACNPD is an online tool that provides users with a quick search of the pharmacol
     sc:url "http://www.acnpd-fu.com/" .
 
 <https://bio.tools/aco> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654,
@@ -82178,8 +67186,33 @@ ACNPD is an online tool that provides users with a quick search of the pharmacol
     sc:url "https://github.com/Yoniming/code" ;
     biotools:primaryContact "Niu Yi" .
 
+<https://bio.tools/acorde> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library",
+        "Workflow" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_2259,
+        edam:topic_3170,
+        edam:topic_3308,
+        edam:topic_3320 ;
+    sc:citation <https://doi.org/10.1038/S41467-022-29497-W>,
+        "pmcid:PMC8983708",
+        "pubmed:35383181" ;
+    sc:description "A tool for isoform co-usage networks from single-cell RNA-seq data" ;
+    sc:featureList edam:operation_0264,
+        edam:operation_0313,
+        edam:operation_3463,
+        edam:operation_3799 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "acorde" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/ConesaLab/acorde" .
+
 <https://bio.tools/acoustilytix> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3336,
         edam:topic_3373,
@@ -82193,8 +67226,31 @@ ACNPD is an online tool that provides users with a quick search of the pharmacol
     sc:name "Acoustilytix" ;
     sc:url "http://acoustilytix.com/" .
 
+<https://bio.tools/acovpepdb> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0091,
+        edam:topic_0154,
+        edam:topic_3068,
+        edam:topic_3071 ;
+    sc:citation <https://doi.org/10.1038/S41597-022-01394-3>,
+        "pmcid:PMC9192597",
+        "pubmed:35697698" ;
+    sc:description "ACovPepDB is a comprehensive peptides database of anti-coronavirus peptides, which contains 518 enrties with 214 unique ACovPs manually extracted from research articles and public databases." ;
+    sc:featureList edam:operation_0306,
+        edam:operation_2421,
+        edam:operation_3431 ;
+    sc:isAccessibleForFree true ;
+    sc:license "CC-BY-4.0" ;
+    sc:name "ACovPepDB" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://i.uestc.edu.cn/ACovPepDB/" .
+
 <https://bio.tools/acp-da> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2640,
@@ -82213,7 +67269,7 @@ ACNPD is an online tool that provides users with a quick search of the pharmacol
     sc:url "http://github.com/chenxgscuec/ACPDA" .
 
 <https://bio.tools/acp-mhcnn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
         edam:topic_3474 ;
@@ -82226,7 +67282,7 @@ ACNPD is an online tool that provides users with a quick search of the pharmacol
     sc:url "https://github.com/mrzResearchArena/Anticancer-Peptides-CNN" .
 
 <https://bio.tools/acpred-laf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2640,
@@ -82243,7 +67299,7 @@ ACNPD is an online tool that provides users with a quick search of the pharmacol
     sc:url "http://server.malab.cn/ACPred-LAF" .
 
 <https://bio.tools/acpredstackl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -82261,7 +67317,7 @@ Anticancer peptides (ACPs),known as potential future therapeutics for cancer, ha
     sc:url "http://bigdata.biocie.cn/ACPredStackL/" .
 
 <https://bio.tools/acpype> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0593,
         edam:topic_1317 ;
@@ -82278,7 +67334,7 @@ Anticancer peptides (ACPs),known as potential future therapeutics for cancer, ha
     sc:url "http://code.google.com/p/acpype/" .
 
 <https://bio.tools/acrdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0114,
         edam:topic_0621,
@@ -82297,7 +67353,7 @@ Acr (anti-CRISPR) proteins are short proteins usually found in phages prophages
     sc:url "http://bcb.unl.edu/AcrDB" .
 
 <https://bio.tools/acrdetector> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0749,
@@ -82310,7 +67366,7 @@ Acr (anti-CRISPR) proteins are short proteins usually found in phages prophages
     sc:url "https://github.com/RiversDong/AcrDetector" .
 
 <https://bio.tools/acre> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0821,
@@ -82326,7 +67382,7 @@ Acr (anti-CRISPR) proteins are short proteins usually found in phages prophages
     sc:url "https://github.com/ramzan1990/ACRE" .
 
 <https://bio.tools/acrfinder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0091,
@@ -82347,7 +67403,7 @@ Acr (anti-CRISPR) proteins are short proteins usually found in phages prophages
     sc:url "http://bcb.unl.edu/AcrFinder/" .
 
 <https://bio.tools/acrhub> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0160,
@@ -82367,7 +67423,7 @@ Bacteria and archaea have developed a wide variety of CRISPR-Cas systems to prot
     sc:url "http://pacrispr.erc.monash.edu/AcrHub/" .
 
 <https://bio.tools/acsni> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -82391,22 +67447,25 @@ Bacteria and archaea have developed a wide variety of CRISPR-Cas systems to prot
 
 <https://bio.tools/act> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1025" ;
-            sc:name "Gene identifier" ;
-            sc:sameAs "http://edamontology.org/data_1025" ] ;
+            sc:additionalType "http://edamontology.org/data_1025" ;
+            sc:name "Gene identifier" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3271" ;
-            sc:name "Gene tree" ;
-            sc:sameAs "http://edamontology.org/data_3271" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3271" ;
+            sc:name "Gene tree" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3308 ;
     sc:citation <https://doi.org/10.1016/j.isci.2021.102848>,
+        <https://doi.org/10.1016/j.xpro.2022.101208>,
         <https://doi.org/10.1093/nar/gkl204>,
         <https://doi.org/10.1111/j.1365-313X.2006.02681.x>,
         "pmcid:PMC1538833",
+        "pmcid:PMC8334378",
+        "pmcid:PMC8885756",
         "pubmed:16623895",
-        "pubmed:16845059" ;
+        "pubmed:16845059",
+        "pubmed:34381973",
+        "pubmed:35243384" ;
     sc:description "The Arabidopsis Coexpression Tool (ACT) is based on the coexpression analysis of 21273 Arabidopsis thaliana genes from gene pair correlation data of 3500 Affymetrix Arabidopsis ATH1 Genome Array Chip microarray samples." ;
     sc:featureList edam:operation_2938 ;
     sc:isAccessibleForFree true ;
@@ -82422,14 +67481,14 @@ Bacteria and archaea have developed a wide variety of CRISPR-Cas systems to prot
 
 <https://bio.tools/action> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3112" ;
-            sc:name "Gene expression matrix" ;
-            sc:sameAs "http://edamontology.org/data_3112" ] ;
+            sc:additionalType "http://edamontology.org/data_3112" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Gene expression matrix" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Pathway or network" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -82446,7 +67505,7 @@ Bacteria and archaea have developed a wide variety of CRISPR-Cas systems to prot
     biotools:primaryContact "Shahin Mohammadi" .
 
 <https://bio.tools/activa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_3170,
@@ -82460,7 +67519,7 @@ Bacteria and archaea have developed a wide variety of CRISPR-Cas systems to prot
     sc:url "https://github.com/SindiLab/ACTIVA" .
 
 <https://bio.tools/activedriverdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0601,
@@ -82493,7 +67552,7 @@ cancer mutations in CTNNB1 phosphodegron.""" ;
         "Michał Krassowski" .
 
 <https://bio.tools/activetf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0749 ;
@@ -82509,7 +67568,7 @@ cancer mutations in CTNNB1 phosphodegron.""" ;
     biotools:primaryContact "Harris Engineering Center" .
 
 <https://bio.tools/acvalidator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0203,
@@ -82529,7 +67588,7 @@ cancer mutations in CTNNB1 phosphodegron.""" ;
     sc:url "https://github.com/tgen/ACValidator" .
 
 <https://bio.tools/ad-ae> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3474 ;
@@ -82544,7 +67603,7 @@ cancer mutations in CTNNB1 phosphodegron.""" ;
     sc:url "https://gitlab.cs.washington.edu/abdincer/ad-ae" .
 
 <https://bio.tools/ad-enm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0176,
@@ -82569,7 +67628,7 @@ cancer mutations in CTNNB1 phosphodegron.""" ;
     biotools:primaryContact "Wenjun Zheng" .
 
 <https://bio.tools/ad-identification-classification> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_0637,
@@ -82586,7 +67645,7 @@ cancer mutations in CTNNB1 phosphodegron.""" ;
     biotools:primaryContact "Matlab Mebin" .
 
 <https://bio.tools/ad-knowledge-portal> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Bioinformatics portal",
         "Web API" ;
     sc:applicationSubCategory edam:topic_0634,
@@ -82604,7 +67663,7 @@ cancer mutations in CTNNB1 phosphodegron.""" ;
     sc:url "http://adknowledgeportal.org" .
 
 <https://bio.tools/ada-m> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3337,
         edam:topic_3571 ;
@@ -82620,8 +67679,30 @@ The Automatable Discovery and Access Matrix (ADA-M) provides a standardized way
     sc:name "ADA-M" ;
     sc:url "https://github.com/ga4gh/ADA-M" .
 
+<https://bio.tools/adabmdca> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0099,
+        edam:topic_2269,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1186/S12859-021-04441-9>,
+        "pmcid:PMC8555268",
+        "pubmed:34715775" ;
+    sc:description "Adaptive Boltzmann machine learning for Potts models of biological data (adabmDCA)  This is an implementation of the Boltzmann machine learning to infer several maximum-entropy statistical models of Potts or Ising variables given a set of observables. More precisely, it infers the couplings and the fields of a set of generalized Direct Coupling Analysis (DCA) models given a Multiple Sequence Alignment (MSA) of protein or RNA sequences. It is also possible to infer an Ising model from a set of spin configurations. The learning is performed via a gradient ascent of the likelihood of the data in which the model observables are computed via a Markov Chain Monte Carlo (MCMC) sampling." ;
+    sc:featureList edam:operation_0272,
+        edam:operation_0477,
+        edam:operation_2939,
+        edam:operation_3658,
+        edam:operation_3891 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "adabmDCA" ;
+    sc:softwareHelp <https://github.com/anna-pa-m/adabmDCA/blob/master/docs/documentation.md> ;
+    sc:url "https://github.com/anna-pa-m/adabmDCA" ;
+    biotools:primaryContact <https://orcid.org/0000-0003-3937-3763> .
+
 <https://bio.tools/adacgh2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3175 ;
@@ -82639,7 +67720,7 @@ The Automatable Discovery and Access Matrix (ADA-M) provides a standardized way
     biotools:primaryContact <http://orcid.org/0000-0002-6637-9039> .
 
 <https://bio.tools/adact> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0091,
@@ -82659,7 +67740,7 @@ ADACT (The Alignment-free Dissimilarity Analysis & Comparison Tool) measures dis
     sc:url "http://research.buet.ac.bd/ADACT/" .
 
 <https://bio.tools/adam> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3524 ;
     sc:citation <https://doi.org/10.1016/j.livsci.2008.06.028> ;
@@ -82671,8 +67752,29 @@ ADACT (The Alignment-free Dissimilarity Analysis & Comparison Tool) measures dis
     sc:softwareHelp <http://adam.agrsci.dk/manual_website.htm> ;
     sc:url "http://adam.agrsci.dk/" .
 
+<https://bio.tools/adamant> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0769,
+        edam:topic_3382,
+        edam:topic_3489,
+        edam:topic_3520 ;
+    sc:citation <https://doi.org/10.12688/F1000RESEARCH.110875.2>,
+        "pmcid:PMC9178528",
+        "pubmed:35707001" ;
+    sc:description "Adamant is a JSON schema-based metadata creation tool for various research data management workflows." ;
+    sc:featureList edam:operation_2422,
+        edam:operation_3435 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "Adamant" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://plasma-mds.github.io/adamant" .
+
 <https://bio.tools/adap-kdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Bioinformatics portal" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3172,
@@ -82692,7 +67794,7 @@ ADACT (The Alignment-free Dissimilarity Analysis & Comparison Tool) measures dis
     sc:url "https://www.adap.cloud" .
 
 <https://bio.tools/adapter_removal> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0769 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/bts311> ;
@@ -82706,14 +67808,14 @@ ADACT (The Alignment-free Dissimilarity Analysis & Comparison Tool) measures dis
     biotools:primaryContact "Vincent Moulton" .
 
 <https://bio.tools/adapterremoval> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "AdapterRemoval searches for and removes adapter sequences from High-Throughput Sequencing (HTS) data and (optionally) trims low quality bases from the 3' end of reads following adapter removal. AdapterRemoval can analyze both single end and paired end data, and can be used to merge overlapping paired-ended reads into (longer) consensus sequences. Additionally, AdapterRemoval can construct a consensus adapter sequence for paired-ended reads, if which this information is not available." ;
     sc:name "AdapterRemoval" ;
     sc:softwareVersion "v2.3.2" ;
     sc:url "https://github.com/MikkelSchubert/adapterremoval" .
 
 <https://bio.tools/adaptest> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3053,
@@ -82734,7 +67836,7 @@ ADACT (The Alignment-free Dissimilarity Analysis & Comparison Tool) measures dis
     biotools:primaryContact "Weixin Cai" .
 
 <https://bio.tools/adaptml> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3293 ;
@@ -82750,7 +67852,7 @@ ADACT (The Alignment-free Dissimilarity Analysis & Comparison Tool) measures dis
     biotools:primaryContact "Eric Alm" .
 
 <https://bio.tools/adas-viewer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3295,
@@ -82769,8 +67871,23 @@ ADACT (The Alignment-free Dissimilarity Analysis & Comparison Tool) measures dis
         <http://genomics.chpc.utah.edu/AD/manual/Manual.pdf> ;
     sc:url "http://genomics.chpc.utah.edu/AD" .
 
+<https://bio.tools/adastra> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_2885,
+        edam:topic_3125 ;
+    sc:citation <https://doi.org/10.1038/s41467-021-23007-0> ;
+    sc:description "The database of Allelic Dosage-corrected Allele-Specific human Transcription factor binding sites provides a genomic map of allele-specific binding at hundreds thousands single-nucleotide polymorphisms constructed by meta-analysis of thousands of ChIP-Seq experiments." ;
+    sc:featureList edam:operation_2409 ;
+    sc:isAccessibleForFree true ;
+    sc:name "ADASTRA" ;
+    sc:softwareHelp <https://adastra.autosome.org/bill-cipher/help> ;
+    sc:softwareVersion "5.1.2" ;
+    sc:url "https://adastra.autosome.org" .
+
 <https://bio.tools/adat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -82792,7 +67909,7 @@ ADACT (The Alignment-free Dissimilarity Analysis & Comparison Tool) measures dis
     biotools:primaryContact "Foo Cheung" .
 
 <https://bio.tools/adataviewer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3360,
@@ -82810,7 +67927,7 @@ ADACT (The Alignment-free Dissimilarity Analysis & Comparison Tool) measures dis
     sc:url "https://adata.scai.fraunhofer.de" .
 
 <https://bio.tools/adatiss> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -82831,8 +67948,53 @@ ADACT (The Alignment-free Dissimilarity Analysis & Comparison Tool) measures dis
         "Windows" ;
     sc:url "https://github.com/mwgrassgreen/AdaTiSS" .
 
+<https://bio.tools/adc> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0602,
+        edam:topic_2640,
+        edam:topic_2830,
+        edam:topic_3170 ;
+    sc:citation <https://doi.org/10.1371/JOURNAL.PCBI.1009548>,
+        "pmcid:PMC8604336",
+        "pubmed:34752449" ;
+    sc:description "ADC is an efficient method to identify highly interrelated genes across datasets." ;
+    sc:featureList edam:operation_3223,
+        edam:operation_3435,
+        edam:operation_3891 ;
+    sc:name "ADC" ;
+    sc:url "https://github.com/zhanglabtools/ADC" ;
+    biotools:primaryContact <https://orcid.org/0000-0003-0192-7118> .
+
+<https://bio.tools/addictedchem> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0602,
+        edam:topic_2840,
+        edam:topic_3336,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.3390/MOLECULES27123931>,
+        "pmcid:PMC9227411",
+        "pubmed:35745053" ;
+    sc:description "AddictedChem is a base of controlled substances and a platform for predicting NPS." ;
+    sc:featureList edam:operation_2421,
+        edam:operation_2422,
+        edam:operation_3216,
+        edam:operation_3929,
+        edam:operation_3938 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Other" ;
+    sc:name "AddictedChem" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <http://design.rxnfinder.org/addictedchem/help/> ;
+    sc:url "http://design.rxnfinder.org/addictedchem/prediction/" .
+
 <https://bio.tools/addictgene> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
@@ -82853,7 +68015,7 @@ ADACT (The Alignment-free Dissimilarity Analysis & Comparison Tool) measures dis
     sc:url "http://159.226.67.237/sun/addictgedb/" .
 
 <https://bio.tools/addtag> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0749,
@@ -82874,7 +68036,7 @@ CRISPR Cas-induced genome editing is a powerful tool for genetic engineering, ho
     sc:url "https://github.com/tdseher/addtag-project" .
 
 <https://bio.tools/adeditome> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_0749,
@@ -82892,7 +68054,7 @@ CRISPR Cas-induced genome editing is a powerful tool for genetic engineering, ho
     sc:url "https://ccsm.uth.edu/ADeditome" .
 
 <https://bio.tools/adeip> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2229,
@@ -82914,7 +68076,7 @@ CRISPR Cas-induced genome editing is a powerful tool for genetic engineering, ho
     sc:url "http://geneyun.net/ADEIP" .
 
 <https://bio.tools/adelaidet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_3382,
         edam:topic_3473 ;
@@ -82927,7 +68089,7 @@ CRISPR Cas-induced genome editing is a powerful tool for genetic engineering, ho
     sc:url "http://git.io/AdelaiDet" .
 
 <https://bio.tools/adenita> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0611,
         edam:topic_0654,
@@ -82944,7 +68106,7 @@ CRISPR Cas-induced genome editing is a powerful tool for genetic engineering, ho
     sc:url "https://github.com/edellano/Adenita-SAMSON-Edition-Linux" .
 
 <https://bio.tools/adenosiland> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_2258 ;
@@ -82961,7 +68123,7 @@ CRISPR Cas-induced genome editing is a powerful tool for genetic engineering, ho
     biotools:primaryContact "Stefano Moro" .
 
 <https://bio.tools/adepro> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Web application" ;
     sc:applicationSubCategory edam:topic_2269,
@@ -82978,7 +68140,7 @@ CRISPR Cas-induced genome editing is a powerful tool for genetic engineering, ho
     sc:url "https://cran.r-project.org/package=adepro" .
 
 <https://bio.tools/adept> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0218,
         edam:topic_0769,
@@ -82994,7 +68156,7 @@ CRISPR Cas-induced genome editing is a powerful tool for genetic engineering, ho
     sc:url "https://github.com/hms-dbmi/adept" .
 
 <https://bio.tools/adepth> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0154,
@@ -83015,7 +68177,7 @@ CRISPR Cas-induced genome editing is a powerful tool for genetic engineering, ho
     biotools:primaryContact "Adepth coordinator" .
 
 <https://bio.tools/adepts> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -83029,23 +68191,46 @@ CRISPR Cas-induced genome editing is a powerful tool for genetic engineering, ho
     sc:url "https://cs.uwaterloo.ca/~l22he/" .
 
 <https://bio.tools/adex> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1147" ;
+            sc:name "GEO accession number" ] ;
+    bsc:output [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1636" ;
+            sc:name "Heat map" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:name "Expression data" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2984" ;
+            sc:name "Pathway or network report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0634,
         edam:topic_3170,
         edam:topic_3295,
         edam:topic_3308 ;
-    sc:citation <https://doi.org/10.1101/2020.06.10.144972> ;
+    sc:citation <https://doi.org/10.1186/s12859-021-04268-4>,
+        "pmcid:PMC8223391",
+        "pubmed:34167460" ;
     sc:description "ADEx: Autoimmune Diseases Explorer is a comprehensive and centralized database for exploring omics data in Autoimmune Diseases. The database that integrates 82 curated transcriptomics and methylation studies covering 5609 samples for some of the most common autoimmune diseases." ;
-    sc:featureList edam:operation_2495,
+    sc:featureList edam:operation_0313,
+        edam:operation_0571,
+        edam:operation_2495,
         edam:operation_3431,
+        edam:operation_3436,
+        edam:operation_3501,
+        edam:operation_3927,
         edam:operation_3928 ;
+    sc:isAccessibleForFree true ;
     sc:name "ADEx: Autoimmune Diseases Explorer" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
     sc:url "https://adex.genyo.es" .
 
 <https://bio.tools/adfinder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0654,
@@ -83062,7 +68247,7 @@ CRISPR Cas-induced genome editing is a powerful tool for genetic engineering, ho
     sc:url "https://github.com/weibozheng/ADFinder" .
 
 <https://bio.tools/adgo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0157,
         edam:topic_0203,
@@ -83084,7 +68269,7 @@ CRISPR Cas-induced genome editing is a powerful tool for genetic engineering, ho
     biotools:primaryContact "ADGO Support" .
 
 <https://bio.tools/adherer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0637,
@@ -83107,7 +68292,7 @@ CRISPR Cas-induced genome editing is a powerful tool for genetic engineering, ho
     biotools:primaryContact "Dan Dediu" .
 
 <https://bio.tools/adjacency-matrix-visualizer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:description "A scalable tool to visualize the adjacency matrix with values on the edges, direction, and the sum of value as the node size." ;
     sc:featureList edam:operation_0337 ;
@@ -83121,7 +68306,7 @@ CRISPR Cas-induced genome editing is a powerful tool for genetic engineering, ho
     biotools:primaryContact "Chaohan Yang" .
 
 <https://bio.tools/adjusted-adjust> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_3418,
         edam:topic_3474 ;
@@ -83136,7 +68321,7 @@ CRISPR Cas-induced genome editing is a powerful tool for genetic engineering, ho
     sc:url "https://github.com/ChildDevLab/MADE-EEG-preprocessing-pipeline/tree/master/adjusted_adjust_scripts" .
 
 <https://bio.tools/adjusted-local-connectivity> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3304,
         edam:topic_3444 ;
@@ -83153,22 +68338,22 @@ CRISPR Cas-induced genome editing is a powerful tool for genetic engineering, ho
 
 <https://bio.tools/adjustpkl> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ],
+            sc:additionalType "http://edamontology.org/data_0944" ;
+            sc:encodingFormat "http://edamontology.org/format_3653" ;
+            sc:name "Peptide mass fingerprint" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0944" ;
-            sc:name "Peptide mass fingerprint" ;
-            sc:sameAs "http://edamontology.org/data_0944" ] ;
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:encodingFormat "http://edamontology.org/format_3653" ;
+            sc:name "Mass spectrometry data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ],
+            sc:additionalType "http://edamontology.org/data_0944" ;
+            sc:encodingFormat "http://edamontology.org/format_3653" ;
+            sc:name "Peptide mass fingerprint" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0944" ;
-            sc:name "Peptide mass fingerprint" ;
-            sc:sameAs "http://edamontology.org/data_0944" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:encodingFormat "http://edamontology.org/format_3653" ;
+            sc:name "Mass spectrometry data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_3520,
@@ -83184,7 +68369,7 @@ CRISPR Cas-induced genome editing is a powerful tool for genetic engineering, ho
     sc:url "http://blog.binfalse.de/software/adjustpkl/" .
 
 <https://bio.tools/adme> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3336,
@@ -83203,8 +68388,27 @@ CRISPR Cas-induced genome editing is a powerful tool for genetic engineering, ho
         "Windows" ;
     sc:url "https://opendata.ncats.nih.gov/adme/" .
 
+<https://bio.tools/admeth> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0219,
+        edam:topic_0634,
+        edam:topic_0654,
+        edam:topic_3295 ;
+    sc:citation <https://doi.org/10.1109/TCBB.2022.3178087>,
+        "pubmed:35617175" ;
+    sc:description "A manually curated database for the differential methylation in Alzheimer's disease." ;
+    sc:featureList edam:operation_2421 ;
+    sc:license "Not licensed" ;
+    sc:name "ADmeth" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://www.biobdlab.cn/ADmeth" .
+
 <https://bio.tools/admetlab> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2258,
         edam:topic_2275,
@@ -83221,7 +68425,7 @@ CRISPR Cas-induced genome editing is a powerful tool for genetic engineering, ho
     biotools:primaryContact "Dong-Sheng Cao" .
 
 <https://bio.tools/admixem> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_3056 ;
@@ -83235,7 +68439,7 @@ CRISPR Cas-induced genome editing is a powerful tool for genetic engineering, ho
     sc:url "https://github.com/melop/admixem" .
 
 <https://bio.tools/admixmap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3056 ;
@@ -83250,7 +68454,7 @@ CRISPR Cas-induced genome editing is a powerful tool for genetic engineering, ho
     sc:url "http://homepages.ed.ac.uk/pmckeigu/software/admixmap/" .
 
 <https://bio.tools/admixpipe> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0102,
@@ -83272,7 +68476,7 @@ CRISPR Cas-induced genome editing is a powerful tool for genetic engineering, ho
     sc:url "https://github.com/stevemussmann/admixturePipeline" .
 
 <https://bio.tools/admixr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0769,
@@ -83293,8 +68497,30 @@ CRISPR Cas-induced genome editing is a powerful tool for genetic engineering, ho
     sc:url "https://bodkan.net/admixr/articles/tutorial.html" ;
     biotools:primaryContact "Martin Petr" .
 
+<https://bio.tools/admixsim2> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0199,
+        edam:topic_0625,
+        edam:topic_3056,
+        edam:topic_3305,
+        edam:topic_3796 ;
+    sc:citation <https://doi.org/10.1186/S12859-021-04415-X>,
+        "pmcid:PMC8522168",
+        "pubmed:34663213" ;
+    sc:description "AdmixSim 2 is a forward-time simulator for modeling complex population admixture." ;
+    sc:featureList edam:operation_0487,
+        edam:operation_2426,
+        edam:operation_3196,
+        edam:operation_3891 ;
+    sc:license "GPL-3.0" ;
+    sc:name "AdmixSim 2" ;
+    sc:softwareHelp <https://github.com/Shuhua-Group/AdmixSim2/blob/master/AdmixSim2_manual.pdf> ;
+    sc:url "https://github.com/Shuhua-Group/AdmixSim2" ;
+    biotools:primaryContact <https://orcid.org/0000-0002-1975-1002> .
+
 <https://bio.tools/admixtools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3056 ;
     sc:citation <https://doi.org/10.1534/genetics.112.145037> ;
@@ -83308,7 +68534,7 @@ CRISPR Cas-induced genome editing is a powerful tool for genetic engineering, ho
     sc:url "https://github.com/DReichLab/AdmixTools" .
 
 <https://bio.tools/admixture> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3056 ;
     sc:citation <https://doi.org/10.1101/gr.094052.109>,
@@ -83324,7 +68550,7 @@ CRISPR Cas-induced genome editing is a powerful tool for genetic engineering, ho
     sc:url "http://software.genetics.ucla.edu/admixture/" .
 
 <https://bio.tools/admixturegraph> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_2269,
@@ -83342,7 +68568,7 @@ CRISPR Cas-induced genome editing is a powerful tool for genetic engineering, ho
     biotools:primaryContact "Thomas Mailund" .
 
 <https://bio.tools/admo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Ontology" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0602,
@@ -83355,7 +68581,7 @@ CRISPR Cas-induced genome editing is a powerful tool for genetic engineering, ho
     sc:url "http://bioportal.bioontology.org/ontologies/ADMO" .
 
 <https://bio.tools/adnet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3382,
         edam:topic_3473,
@@ -83367,7 +68593,7 @@ CRISPR Cas-induced genome editing is a powerful tool for genetic engineering, ho
     sc:url "https://github.com/hellloxiaotian/ADNet" .
 
 <https://bio.tools/adnuts> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_2269,
@@ -83384,7 +68610,7 @@ CRISPR Cas-induced genome editing is a powerful tool for genetic engineering, ho
     biotools:primaryContact "Cole Monnahan" .
 
 <https://bio.tools/adops> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation "pubmed:22829571" ;
@@ -83397,7 +68623,7 @@ CRISPR Cas-induced genome editing is a powerful tool for genetic engineering, ho
     biotools:primaryContact "Jorge Vieira" .
 
 <https://bio.tools/adopt_bbmri-eric> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0769,
         edam:topic_2640,
@@ -83417,7 +68643,7 @@ The Samply.MDR-based ETL tools from ADOPT BBMRI-ERIC.""" ;
     sc:url "https://github.com/sebmate/ADOPT-BBMRI-ERIC-ETL-Tools" .
 
 <https://bio.tools/adopy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3361,
@@ -83433,7 +68659,7 @@ The Samply.MDR-based ETL tools from ADOPT BBMRI-ERIC.""" ;
     sc:url "https://docs.adopy.org/en/stable/" .
 
 <https://bio.tools/adpedkd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0634,
@@ -83457,7 +68683,7 @@ Together, working on ADPedKD, we will aim at completing these gaps and having a
     sc:url "https://www.adpedkd.org/" .
 
 <https://bio.tools/adpenetrance> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0634,
@@ -83474,8 +68700,26 @@ Together, working on ADPedKD, we will aim at completing these gaps and having a
     biotools:primaryContact <https://orcid.org/0000-0002-4924-7712>,
         <https://orcid.org/0000-0002-5280-5017> .
 
+<https://bio.tools/adpfunchisq> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0602,
+        edam:topic_0625,
+        edam:topic_3518,
+        edam:topic_3895 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC206>,
+        "pubmed:35385081" ;
+    sc:description "Adapted Functional Chi-squared test (AdpFunChisq) is a model-free functional dependency measure that uses function direction and strength as evidence for causal inference." ;
+    sc:isAccessibleForFree true ;
+    sc:license "LGPL-3.0" ;
+    sc:name "AdpFunChisq" ;
+    sc:operatingSystem "Mac",
+        "Windows" ;
+    sc:url "https://cran.r-project.org/package=FunChisq" .
+
 <https://bio.tools/adpribodb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0154,
@@ -83503,7 +68747,7 @@ Together, working on ADPedKD, we will aim at completing these gaps and having a
     sc:url "http://adpribodb.leunglab.org" .
 
 <https://bio.tools/adsn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0634,
@@ -83525,7 +68769,7 @@ Together, working on ADPedKD, we will aim at completing these gaps and having a
         "Owen J. L. Rackham" .
 
 <https://bio.tools/adsplit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -83545,7 +68789,7 @@ Together, working on ADPedKD, we will aim at completing these gaps and having a
     biotools:primaryContact "Claudio Lottaz" .
 
 <https://bio.tools/adtex> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3168,
@@ -83563,7 +68807,7 @@ Together, working on ADPedKD, we will aim at completing these gaps and having a
     biotools:primaryContact "Kaushalya Amarasinghe" .
 
 <https://bio.tools/advance-resistance-calculator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:description "It can calculate four band and five band resistor's resistance." ;
     sc:featureList edam:operation_3482 ;
@@ -83577,7 +68821,7 @@ Together, working on ADPedKD, we will aim at completing these gaps and having a
     biotools:primaryContact "Yawar Rehman" .
 
 <https://bio.tools/advanced_cell_classifier> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2640,
@@ -83598,18 +68842,15 @@ Together, working on ADPedKD, we will aim at completing these gaps and having a
 
 <https://bio.tools/advanced_pdb_search> a sc:SoftwareApplication ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2080" ;
-            sc:name "Database search results" ;
-            sc:sameAs "http://edamontology.org/data_2080" ],
+            sc:additionalType "http://edamontology.org/data_0883" ;
+            sc:name "Structure" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1537" ;
-            sc:name "Protein structure report" ;
-            sc:sameAs "http://edamontology.org/data_1537" ],
+            sc:additionalType "http://edamontology.org/data_2080" ;
+            sc:name "Database search results" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0883" ;
-            sc:name "Structure" ;
-            sc:sameAs "http://edamontology.org/data_0883" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1537" ;
+            sc:name "Protein structure report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2814 ;
     sc:citation <https://doi.org/10.1093/nar/gkv1352> ;
@@ -83627,7 +68868,7 @@ Together, working on ADPedKD, we will aim at completing these gaps and having a
     biotools:primaryContact "Gerard Kleywegt" .
 
 <https://bio.tools/advit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3382,
         edam:topic_3473 ;
@@ -83640,7 +68881,7 @@ Together, working on ADPedKD, we will aim at completing these gaps and having a
     sc:url "http://zeetu.org/advit.html" .
 
 <https://bio.tools/advp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0634,
@@ -83658,7 +68899,7 @@ Together, working on ADPedKD, we will aim at completing these gaps and having a
     sc:url "https://advp.niagads.org/" .
 
 <https://bio.tools/adze> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2885,
         edam:topic_3056 ;
@@ -83674,7 +68915,7 @@ Together, working on ADPedKD, we will aim at completing these gaps and having a
     biotools:primaryContact "Noah A Rosenberg" .
 
 <https://bio.tools/aeenrich> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2269,
@@ -83690,8 +68931,21 @@ Together, working on ADPedKD, we will aim at completing these gaps and having a
     sc:softwareHelp <https://cran.r-project.org/web/packages/AEenrich/AEenrich.pdf> ;
     sc:url "https://CRAN.R-project.org/package=AEenrich" .
 
+<https://bio.tools/aegean> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:applicationSubCategory edam:topic_0622 ;
+    sc:citation <https://doi.org/10.1186/1471-2105-13-187> ;
+    sc:description "The AEGeAn Toolkit provides a bundle of software tools for evaluating gene structure annotations and genome organization." ;
+    sc:featureList edam:operation_0361,
+        edam:operation_2451 ;
+    sc:license "ISC" ;
+    sc:name "AEGeAn" ;
+    sc:softwareHelp <https://aegean.readthedocs.io/en/v0.16.0/index.html> ;
+    sc:softwareVersion "0.16.0" ;
+    sc:url "http://brendelgroup.github.io/AEGeAn/" .
+
 <https://bio.tools/aemda> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_0659,
@@ -83706,7 +68960,7 @@ Together, working on ADPedKD, we will aim at completing these gaps and having a
     sc:url "https://github.com/CunmeiJi/AEMDA" .
 
 <https://bio.tools/aenet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0176,
         edam:topic_0593,
@@ -83728,7 +68982,7 @@ Together, working on ADPedKD, we will aim at completing these gaps and having a
     sc:url "http://ann.atomistic.net/" .
 
 <https://bio.tools/aeqtl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0203,
@@ -83748,7 +69002,7 @@ Together, working on ADPedKD, we will aim at completing these gaps and having a
     sc:url "https://github.com/Huang-lab/AeQTL" .
 
 <https://bio.tools/aequatus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0797 ;
@@ -83765,7 +69019,7 @@ Together, working on ADPedKD, we will aim at completing these gaps and having a
     sc:url "http://aequatus.tgac.ac.uk/" .
 
 <https://bio.tools/aesop> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_2814 ;
@@ -83783,33 +69037,26 @@ Together, working on ADPedKD, we will aim at completing these gaps and having a
     sc:url "http://aesop.readthedocs.io/en/latest/index.html" ;
     biotools:primaryContact "Dimitrios Morikis" .
 
-<https://bio.tools/aesthetic_damage> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3063,
-        edam:topic_3405,
-        edam:topic_3421 ;
-    sc:citation <https://doi.org/10.1371/JOURNAL.PONE.0226322>,
-        "pmcid:PMC6919621",
-        "pubmed:31851712" ;
-    sc:description """HOMEPAGE LINK BROKEN 
-Development of a computer-aided design software for the quantitative evaluation of aesthetic damage.
-
-Diagnosis reports AIPE (Aesthetic damage impact/impairment assessment).
-
-This aesthetic damage assessment program is an open-access software ×.
-
-Attention! All fields are required!.
-
-This aesthetic damage assessment program is an open-access software (the user may register online only). It was developed by University of São Paulo School of Dentistry in a partnership with University of São Paulo Engineering School - São Carlos campus.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'aesthetic damage evaluation'""" ;
-    sc:featureList edam:operation_3096,
-        edam:operation_3799,
-        edam:operation_3894 ;
-    sc:name "aesthetic damage" ;
-    sc:url "https://www.aestheticdamage.com" .
+<https://bio.tools/afa-recur> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_2269,
+        edam:topic_3474,
+        edam:topic_3577 ;
+    sc:citation <https://doi.org/10.1093/EUROPACE/EUAC145>,
+        "pubmed:36006664" ;
+    sc:description "AFA-Recur, a machine-learning-based probability score predicting 1-year risk of recurrent atrial arrhythmia after AF ablation" ;
+    sc:featureList edam:operation_3359 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "AFA-Recur" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://afarec.hpc4ai.unito.it/" .
 
 <https://bio.tools/afal> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0166,
         edam:topic_0602,
@@ -83828,7 +69075,7 @@ This aesthetic damage assessment program is an open-access software (the user ma
     biotools:primaryContact "Contact form" .
 
 <https://bio.tools/afexnet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3170,
@@ -83845,7 +69092,7 @@ This aesthetic damage assessment program is an open-access software (the user ma
     biotools:primaryContact "NeuroSyd" .
 
 <https://bio.tools/affxparser> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3071,
@@ -83865,14 +69112,14 @@ This aesthetic damage assessment program is an open-access software (the user ma
 
 <https://bio.tools/affy> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0928" ;
-            sc:name "Gene expression profile" ;
-            sc:sameAs "http://edamontology.org/data_0928" ] ;
+            sc:additionalType "http://edamontology.org/data_0928" ;
+            sc:encodingFormat "http://edamontology.org/format_2058" ;
+            sc:name "Gene expression profile" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -83895,7 +69142,7 @@ This aesthetic damage assessment program is an open-access software (the user ma
     biotools:primaryContact "Rafael A. Irizarry" .
 
 <https://bio.tools/affy6cnv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3053,
@@ -83910,7 +69157,7 @@ This aesthetic damage assessment program is an open-access software (the user ma
     sc:url "http://sourceforge.net/projects/affy6cnv/" .
 
 <https://bio.tools/affycomp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -83929,7 +69176,7 @@ This aesthetic damage assessment program is an open-access software (the user ma
     biotools:primaryContact "Rafael A. Irizarry" .
 
 <https://bio.tools/affycompatible> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3489,
@@ -83948,7 +69195,7 @@ This aesthetic damage assessment program is an open-access software (the user ma
     biotools:primaryContact "Martin Morgan" .
 
 <https://bio.tools/affycontam> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3365,
@@ -83967,7 +69214,7 @@ This aesthetic damage assessment program is an open-access software (the user ma
     biotools:primaryContact "V. Carey" .
 
 <https://bio.tools/affycoretools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2269,
@@ -83987,14 +69234,14 @@ This aesthetic damage assessment program is an open-access software (the user ma
 
 <https://bio.tools/affyexpress> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0928" ;
-            sc:name "Gene expression profile" ;
-            sc:sameAs "http://edamontology.org/data_0928" ] ;
+            sc:additionalType "http://edamontology.org/data_0928" ;
+            sc:encodingFormat "http://edamontology.org/format_2058" ;
+            sc:name "Gene expression profile" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -84013,7 +69260,7 @@ This aesthetic damage assessment program is an open-access software (the user ma
     biotools:primaryContact "Xuejun Arthur Li" .
 
 <https://bio.tools/affygcqc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3572 ;
@@ -84030,7 +69277,7 @@ This aesthetic damage assessment program is an open-access software (the user ma
     sc:url "http://www.transcriptome.ens.fr/AffyGCQC/" .
 
 <https://bio.tools/affyilm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -84050,7 +69297,7 @@ This aesthetic damage assessment program is an open-access software (the user ma
     biotools:primaryContact "Fabrice Berger" .
 
 <https://bio.tools/affyio> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -84071,14 +69318,14 @@ This aesthetic damage assessment program is an open-access software (the user ma
 
 <https://bio.tools/affylmgui> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0928" ;
-            sc:name "Gene expression profile" ;
-            sc:sameAs "http://edamontology.org/data_0928" ] ;
+            sc:additionalType "http://edamontology.org/data_0928" ;
+            sc:encodingFormat "http://edamontology.org/format_2058" ;
+            sc:name "Gene expression profile" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -84101,7 +69348,7 @@ This aesthetic damage assessment program is an open-access software (the user ma
         "Yifang Hu" .
 
 <https://bio.tools/affymetrix_error_rate> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_2885 ;
     sc:description "Affymetrix_Error_Rate is a simple program that identifies the error rate in files of Affymetrix microarray SNP data" ;
@@ -84112,7 +69359,7 @@ This aesthetic damage assessment program is an open-access software (the user ma
     sc:url "http://dna.leeds.ac.uk/AffyErrorRate/" .
 
 <https://bio.tools/affymetrix_netaffx_analysis_center> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0203,
@@ -84134,7 +69381,7 @@ This aesthetic damage assessment program is an open-access software (the user ma
     biotools:primaryContact "Support" .
 
 <https://bio.tools/affypara> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -84153,7 +69400,7 @@ This aesthetic damage assessment program is an open-access software (the user ma
     biotools:primaryContact "Markus Schmidberger" .
 
 <https://bio.tools/affyparaebi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203 ;
     sc:description "Aan R based pipeline for parallel pre-processing of Affymetrix TM chips. The pipeline starts from a directory containing raw CEL files files and produces Bioconductor R objects containing gene expression measurements suitable for further analysis." ;
@@ -84168,7 +69415,7 @@ This aesthetic damage assessment program is an open-access software (the user ma
     biotools:primaryContact "Support" .
 
 <https://bio.tools/affypdnn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -84188,7 +69435,7 @@ This aesthetic damage assessment program is an open-access software (the user ma
     biotools:primaryContact "Laurent Gautier" .
 
 <https://bio.tools/affypipe> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2885,
@@ -84205,7 +69452,7 @@ This aesthetic damage assessment program is an open-access software (the user ma
     biotools:primaryContact "Ezequiel Nicolazzie" .
 
 <https://bio.tools/affyplm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -84227,7 +69474,7 @@ This aesthetic damage assessment program is an open-access software (the user ma
     biotools:primaryContact "Ben Bolstad" .
 
 <https://bio.tools/affyprobeminer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0632,
@@ -84242,7 +69489,7 @@ This aesthetic damage assessment program is an open-access software (the user ma
     sc:url "http://discover.nci.nih.gov/affyprobeminer/" .
 
 <https://bio.tools/affyqcreport> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3518,
@@ -84261,7 +69508,7 @@ This aesthetic damage assessment program is an open-access software (the user ma
     biotools:primaryContact "Craig Parman" .
 
 <https://bio.tools/affyrnadegradation> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0099,
@@ -84283,7 +69530,7 @@ This aesthetic damage assessment program is an open-access software (the user ma
     biotools:primaryContact "Mario Fasold" .
 
 <https://bio.tools/afid> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Plug-in" ;
     sc:applicationSubCategory edam:topic_3168,
@@ -84300,7 +69547,7 @@ This aesthetic damage assessment program is an open-access software (the user ma
     sc:url "https://ellispatrick.github.io/AFid" .
 
 <https://bio.tools/aflap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0102,
@@ -84321,14 +69568,13 @@ This aesthetic damage assessment program is an open-access software (the user ma
 
 <https://bio.tools/aflpinsilico> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ] ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Nucleic acid sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:name "Nucleic acid sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2885 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btg090>,
@@ -84346,7 +69592,7 @@ This aesthetic damage assessment program is an open-access software (the user ma
     biotools:primaryContact <http://orcid.org/0000-0002-3985-4981> .
 
 <https://bio.tools/afm-image-analysis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3314,
@@ -84366,14 +69612,13 @@ This aesthetic damage assessment program is an open-access software (the user ma
 
 <https://bio.tools/afnetwork> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0870" ;
-            sc:name "Sequence distance matrix" ;
-            sc:sameAs "http://edamontology.org/data_0870" ] ;
+            sc:additionalType "http://edamontology.org/data_0870" ;
+            sc:name "Sequence distance matrix" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:encodingFormat "http://edamontology.org/format_3556" ;
+            sc:name "Pathway or network" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3293 ;
     sc:citation <https://doi.org/10.12688/f1000research.10225.2>,
@@ -84391,7 +69636,7 @@ This aesthetic damage assessment program is an open-access software (the user ma
     biotools:primaryContact <http://orcid.org/0000-0002-3729-8176> .
 
 <https://bio.tools/afp-lse> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0621,
@@ -84409,7 +69654,7 @@ This aesthetic damage assessment program is an open-access software (the user ma
     sc:url "https://github.com/Shujaat123/AFP-LSE" .
 
 <https://bio.tools/afq-browser> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_2229,
@@ -84425,8 +69670,30 @@ This aesthetic damage assessment program is an open-access software (the user ma
     sc:url "https://yeatmanlab.github.io/AFQBrowser-demo/?table[prevSort][count]=2&table[prevSort][order]=ascending&table[prevSort][key]=&table[sort][count]=2&table[sort][order]=ascending&table[sort][key]=" ;
     biotools:primaryContact "Yeatman Lab" .
 
+<https://bio.tools/afse> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0209,
+        edam:topic_0820,
+        edam:topic_2275,
+        edam:topic_3047 ;
+    sc:citation <https://doi.org/10.1093/BIB/BBAC077>,
+        "pubmed:35348582" ;
+    sc:description "An integrated web-based platform for molecular modeling and screening" ;
+    sc:featureList edam:operation_0269,
+        edam:operation_3937,
+        edam:operation_3938 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "AFSE" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://noveldelta.com/AFSE" .
+
 <https://bio.tools/afst> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3512 ;
@@ -84440,20 +69707,36 @@ This aesthetic damage assessment program is an open-access software (the user ma
     sc:softwareVersion "1.0" ;
     sc:url "http://code.google.com/p/afst/" .
 
+<https://bio.tools/afterqc> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_3572 ;
+    sc:citation <https://doi.org/10.1186/s12859-017-1469-3>,
+        "pmcid:PMC5374548",
+        "pubmed:28361673" ;
+    sc:description """Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
+AfterQC can simply go through all fastq files in a folder and then output three folders: good, bad and QC folders, which contains good reads, bad reads and the QC results of each fastq file/pair.""" ;
+    sc:featureList edam:operation_3218 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "afterqc" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/OpenGene/AfterQC" .
+
 <https://bio.tools/aftol> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1870" ;
-            sc:name "Genus name" ;
-            sc:sameAs "http://edamontology.org/data_1870" ],
+            sc:additionalType "http://edamontology.org/data_1870" ;
+            sc:name "Genus name" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1045" ;
-            sc:name "Species name" ;
-            sc:sameAs "http://edamontology.org/data_1045" ] ;
+            sc:additionalType "http://edamontology.org/data_1045" ;
+            sc:name "Species name" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2530" ;
-            sc:name "Organism report" ;
-            sc:sameAs "http://edamontology.org/data_2530" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2530" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Organism report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0621 ;
     sc:citation <https://doi.org/10.3732/ajb.91.10.1446>,
@@ -84469,7 +69752,7 @@ This aesthetic damage assessment program is an open-access software (the user ma
     biotools:primaryContact "Dr. Joseph Spatafora" .
 
 <https://bio.tools/agalma> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0194,
         edam:topic_0622,
@@ -84485,7 +69768,7 @@ This aesthetic damage assessment program is an open-access software (the user ma
     sc:url "https://bitbucket.org/caseywdunn/agalma" .
 
 <https://bio.tools/agbase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0621,
@@ -84505,7 +69788,7 @@ This aesthetic damage assessment program is an open-access software (the user ma
     biotools:primaryContact "AgBase Support" .
 
 <https://bio.tools/agdex> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -84524,7 +69807,7 @@ This aesthetic damage assessment program is an open-access software (the user ma
     biotools:primaryContact "Cuilan lani Gao" .
 
 <https://bio.tools/age> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3175 ;
     sc:citation "pubmed:21233167" ;
@@ -84539,7 +69822,7 @@ This aesthetic damage assessment program is an open-access software (the user ma
     biotools:primaryContact "Abyzov Alexej" .
 
 <https://bio.tools/ageguess> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3068,
         edam:topic_3360,
@@ -84557,7 +69840,7 @@ This aesthetic damage assessment program is an open-access software (the user ma
     sc:url "http://www.ageguess.org" .
 
 <https://bio.tools/agenda> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0621,
@@ -84579,7 +69862,7 @@ This aesthetic damage assessment program is an open-access software (the user ma
     biotools:primaryContact "Alexander Sczyrba" .
 
 <https://bio.tools/agent> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0749,
@@ -84595,7 +69878,7 @@ This aesthetic damage assessment program is an open-access software (the user ma
     sc:url "https://bar.utoronto.ca/AGENT" .
 
 <https://bio.tools/agestructure> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3056,
@@ -84618,14 +69901,13 @@ This aesthetic damage assessment program is an open-access software (the user ma
 
 <https://bio.tools/aggloindel> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1288" ;
-            sc:name "Genome map" ;
-            sc:sameAs "http://edamontology.org/data_1288" ] ;
+            sc:additionalType "http://edamontology.org/data_1288" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Genome map" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1276" ;
-            sc:name "Nucleic acid features" ;
-            sc:sameAs "http://edamontology.org/data_1276" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1276" ;
+            sc:name "Nucleic acid features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0160 ;
     sc:author "Maureen Smith",
@@ -84648,18 +69930,18 @@ This aesthetic damage assessment program is an open-access software (the user ma
 
 <https://bio.tools/aggregate_scores_in_intervals> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_3005" ;
+            sc:name "Annotation track" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0622,
@@ -84679,7 +69961,7 @@ This aesthetic damage assessment program is an open-access software (the user ma
     biotools:primaryContact "Galaxy Support Team" .
 
 <https://bio.tools/aggregatebiovar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2229,
@@ -84701,7 +69983,7 @@ This aesthetic damage assessment program is an open-access software (the user ma
     sc:url "https://www.bioconductor.org/packages/release/bioc/html/aggregateBioVar.html" .
 
 <https://bio.tools/aggregation-particles-2d-grid> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3315,
         edam:topic_3444 ;
@@ -84717,7 +69999,7 @@ This aesthetic damage assessment program is an open-access software (the user ma
     biotools:primaryContact "Aaron T. Becker's Robot Swarm Lab" .
 
 <https://bio.tools/agile> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0622,
@@ -84735,7 +70017,7 @@ This aesthetic damage assessment program is an open-access software (the user ma
     biotools:primaryContact "Misra S." .
 
 <https://bio.tools/agileexomefilter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3056,
         edam:topic_3676 ;
@@ -84748,7 +70030,7 @@ This aesthetic damage assessment program is an open-access software (the user ma
     sc:url "http://dna.leeds.ac.uk/agile/AgileExomeFilter/" .
 
 <https://bio.tools/agilefileconverter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:description "AgileFileConverter converts varaint data in tab delimited text files, typically supplied by commercial NGS service providers, into the format used by AgileGeneFilter, AgileVariantViewer and AgileFileViewer" ;
@@ -84760,7 +70042,7 @@ This aesthetic damage assessment program is an open-access software (the user ma
     sc:url "http://dna.leeds.ac.uk/agile/AgileFileConverter/" .
 
 <https://bio.tools/agilegenefilter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0654 ;
@@ -84773,7 +70055,7 @@ This aesthetic damage assessment program is an open-access software (the user ma
     sc:url "http://dna.leeds.ac.uk/agile/AgileGeneFilter/" .
 
 <https://bio.tools/agilegenotyper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0625,
@@ -84789,7 +70071,7 @@ This aesthetic damage assessment program is an open-access software (the user ma
     sc:url "http://dna.leeds.ac.uk/agile/AgileGenotyper/" .
 
 <https://bio.tools/agilepairedendreadscombiner> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:description "AgilePairedEndReadsCombiner reads a matching pair of fasta or fastq files created from a paired end sequence run which used PCR products as the library template and combines the data to produce a single read file contain data equivalent to the whole PCR product." ;
@@ -84801,7 +70083,7 @@ This aesthetic damage assessment program is an open-access software (the user ma
     sc:url "http://dna.leeds.ac.uk/agile/AgilePairedEndReadsCombiner/" .
 
 <https://bio.tools/agilepindelfilter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3056,
@@ -84815,7 +70097,7 @@ This aesthetic damage assessment program is an open-access software (the user ma
     sc:url "http://dna.leeds.ac.uk/agile/AgilePindelFilter/" .
 
 <https://bio.tools/agilequalityfilter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:description "AgileQualityFilter performs a number of pre-alignment tasks on sequence data from an Illumina GA-II clonal sequencer. The primary function of AgileQualityFilter is to remove low quality sequence data before alignment to a reference sequence." ;
@@ -84829,7 +70111,7 @@ This aesthetic damage assessment program is an open-access software (the user ma
     sc:url "http://dna.leeds.ac.uk/agile/AgileQualityFilter/" .
 
 <https://bio.tools/agilp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203 ;
     sc:description "This script normalises a set of gene expression data files against a predefined reference data set. The normalisation uses LOESS regression. The major assumption is that the actual data and the reference set have a similar epxression frequency distribution. Typically, the reference set used the is average of a large number of datasets such as the output of Baseline script in this package." ;
@@ -84845,7 +70127,7 @@ This aesthetic damage assessment program is an open-access software (the user ma
     biotools:primaryContact "Benny Chain" .
 
 <https://bio.tools/agimicrorna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -84864,7 +70146,7 @@ This aesthetic damage assessment program is an open-access software (the user ma
     biotools:primaryContact "Pedro Lopez-Romero" .
 
 <https://bio.tools/agind> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3518 ;
     sc:description "The AgiND (Agilent Normalization and Diagnostic Package) R library was developped for diagnosis and normalization of one channel and two channel Agilent microarrays." ;
@@ -84879,7 +70161,7 @@ This aesthetic damage assessment program is an open-access software (the user ma
     sc:url "http://tagc.univ-mrs.fr/ComputationalBiology/AgiND/" .
 
 <https://bio.tools/aging-atlas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0208,
@@ -84896,7 +70178,7 @@ This aesthetic damage assessment program is an open-access software (the user ma
     sc:url "https://bigd.big.ac.cn/aging/index" .
 
 <https://bio.tools/aging_mouse_brain> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3304,
         edam:topic_3308,
         edam:topic_3399 ;
@@ -84909,8 +70191,22 @@ This aesthetic damage assessment program is an open-access software (the user ma
     sc:name "aging mouse brain" ;
     sc:url "https://portals.broadinstitute.org/single_cell/study/aging-mouse-brain" .
 
+<https://bio.tools/agln> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workbench" ;
+    sc:applicationSubCategory edam:topic_3382 ;
+    sc:citation <https://doi.org/10.1109/TIP.2022.3166673>,
+        "pubmed:35436194" ;
+    sc:description "A framework called Attention guided Global enhancement and Local refinement Network (AGLN) to improve the encoder-decoder network for image segmentation." ;
+    sc:featureList edam:operation_3436,
+        edam:operation_3629 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "AGLN" ;
+    sc:url "https://github.com/zhasen1996/AGLN" .
+
 <https://bio.tools/agmata> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0634,
@@ -84926,7 +70222,7 @@ This aesthetic damage assessment program is an open-access software (the user ma
     sc:url "https://bitbucket.org/bio2byte/agmata" .
 
 <https://bio.tools/agnostos-db> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3174,
@@ -84944,7 +70240,7 @@ This aesthetic damage assessment program is an open-access software (the user ma
     sc:url "https://github.com/functional-dark-side/agnostos-wf" .
 
 <https://bio.tools/agotool> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -84963,7 +70259,7 @@ This aesthetic damage assessment program is an open-access software (the user ma
     biotools:primaryContact <http://orcid.org/0000-0001-5794-0456> .
 
 <https://bio.tools/agplus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0749 ;
@@ -84977,8 +70273,24 @@ This aesthetic damage assessment program is an open-access software (the user ma
     sc:softwareHelp <https://github.com/kazumits/agplus> ;
     sc:url "https://github.com/kazumits/agplus" .
 
+<https://bio.tools/agptools> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0196,
+        edam:topic_0622 ;
+    sc:description "Agptools is a suite of tools for performing edits to an AGP file during this manual curation stage of genome assembly." ;
+    sc:featureList edam:operation_0231,
+        edam:operation_0525,
+        edam:operation_2409,
+        edam:operation_3216 ;
+    sc:license "MIT" ;
+    sc:name "agptools" ;
+    sc:softwareHelp <https://warrenlab.github.io/agptools/> ;
+    sc:softwareVersion "0.0.1" ;
+    sc:url "https://warrenlab.github.io/agptools/" .
+
 <https://bio.tools/agreg-snpdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0749,
@@ -84999,8 +70311,32 @@ This aesthetic damage assessment program is an open-access software (the user ma
         "Windows" ;
     sc:url "https://azifi.tz.agrar.uni-goettingen.de/agreg-snpdb" .
 
+<https://bio.tools/agreg-snpdb-plants> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0749,
+        edam:topic_0780,
+        edam:topic_2885,
+        edam:topic_3517,
+        edam:topic_3810 ;
+    sc:citation <https://doi.org/10.3390/BIOLOGY11050684>,
+        "pmcid:PMC9138521",
+        "pubmed:35625412" ;
+    sc:description "A database storing SNPs and their predicted impact on transcription factor (TF) binding in promoter regions for different crops." ;
+    sc:featureList edam:operation_0440,
+        edam:operation_0484,
+        edam:operation_3196,
+        edam:operation_3661 ;
+    sc:license "Not licensed" ;
+    sc:name "agReg-SNPdb-Plants" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://azifi.tz.agrar.uni-goettingen.de/agreg-snpdb-plants/" .
+
 <https://bio.tools/agrigo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0203,
@@ -85024,7 +70360,7 @@ This aesthetic damage assessment program is an open-access software (the user ma
         "Tian Tian (Administrator)" .
 
 <https://bio.tools/agris> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0204,
@@ -85045,7 +70381,7 @@ This aesthetic damage assessment program is an open-access software (the user ma
     biotools:primaryContact "Agris team" .
 
 <https://bio.tools/agroseek> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3174,
         edam:topic_3697,
@@ -85061,8 +70397,30 @@ This aesthetic damage assessment program is an open-access software (the user ma
     sc:name "AgroSeek" ;
     sc:url "https://agroseek.cs.vt.edu/" .
 
+<https://bio.tools/agrvate> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workflow" ;
+    sc:applicationSubCategory edam:topic_0114,
+        edam:topic_0154,
+        edam:topic_0194,
+        edam:topic_0199,
+        edam:topic_3293 ;
+    sc:citation <https://doi.org/10.1128/SPECTRUM.01334-21>,
+        "pmcid:PMC8768832",
+        "pubmed:35044202" ;
+    sc:description "AgrVATE is a tool for rapid identification of Staphylococcus aureus agr locus type and also reports possible variants in the agr operon." ;
+    sc:featureList edam:operation_0265,
+        edam:operation_0435,
+        edam:operation_0579 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "AgrVATE" ;
+    sc:operatingSystem "Linux",
+        "Windows" ;
+    sc:url "https://github.com/VishnuRaghuram94/AgrVATE" .
+
 <https://bio.tools/agtar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0199,
@@ -85083,7 +70441,7 @@ This aesthetic damage assessment program is an open-access software (the user ma
     sc:url "https://github.com/v4yuezi/AGTAR.git" .
 
 <https://bio.tools/ah-db> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -85104,8 +70462,25 @@ This aesthetic damage assessment program is an open-access software (the user ma
     sc:url "http://ahdb.ee.ncku.edu.tw/" ;
     biotools:primaryContact "AH-DB team" .
 
+<https://bio.tools/ahd2fhir> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web service" ;
+    sc:applicationSubCategory edam:topic_0089,
+        edam:topic_0218,
+        edam:topic_0769,
+        edam:topic_3384,
+        edam:topic_3400 ;
+    sc:citation <https://doi.org/10.3233/SHTI220026>,
+        "pubmed:35672965" ;
+    sc:description "A REST service for mapping text analysis results from Averbis Health Discovery to FHIR resources." ;
+    sc:featureList edam:operation_0306 ;
+    sc:license "Apache-2.0" ;
+    sc:name "AHD2FHIR" ;
+    sc:operatingSystem "Linux" ;
+    sc:url "https://github.com/miracum/ahd2fhir" .
+
 <https://bio.tools/ahlf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -85123,7 +70498,7 @@ This aesthetic damage assessment program is an open-access software (the user ma
     sc:url "http://gitlab.com/dacs-hpi/ahlf" .
 
 <https://bio.tools/ahmii> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_3301,
@@ -85139,7 +70514,7 @@ This aesthetic damage assessment program is an open-access software (the user ma
     sc:url "http://www.wdcm.org/AHMII/ahmii.html" .
 
 <https://bio.tools/ahnge> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3170,
@@ -85153,8 +70528,25 @@ This aesthetic damage assessment program is an open-access software (the user ma
     sc:name "AhNGE" ;
     sc:url "http://nipgr.ac.in/AhNGE/index.php" .
 
+<https://bio.tools/ahoj-apo-holo-protein-search> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Web API",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0736,
+        edam:topic_3534 ;
+    sc:citation <https://doi.org/10.13140/RG.2.2.19451.18728> ;
+    sc:description "Webserver & command-line tool for search and alignment of APO (unbound) protein structures from HOLO (bound) forms and vice versa. Features: customizable search of Apo-Holo pairs in the PDB, alignment to the query structure, batch mode for fast parallel dataset processing, visualization via Molstar and PyMol, public documented REST-API." ;
+    sc:isAccessibleForFree true ;
+    sc:name "AHoJ: Apo Holo Protein Search" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareVersion "0.4.7" ;
+    sc:url "http://apoholo.cz/" .
+
 <https://bio.tools/ahtpdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0202,
         edam:topic_3376 ;
@@ -85167,11 +70559,42 @@ This aesthetic damage assessment program is an open-access software (the user ma
     sc:name "AHTPDB" ;
     sc:softwareHelp <http://crdd.osdd.net/raghava/ahtpdb/info2.php>,
         <http://crdd.osdd.net/raghava/ahtpdb/main_help.php> ;
-    sc:url "http://crdd.osdd.net/raghava/ahtpdb/index.php" ;
+    sc:url "https://webs.iiitd.edu.in/raghava/ahtpdb/" ;
     biotools:primaryContact "DR. Gajendra P. S. Raghava" .
 
+<https://bio.tools/ahtpin> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0128 ;
+    sc:citation "pubmed:26538599" ;
+    sc:description "AHTpin is an in silico method developed to predict and design efficient antihypertensive peptides." ;
+    sc:featureList edam:operation_2415 ;
+    sc:name "AHTpin" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/ahtpin/index.php> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/ahtpin/index.php" .
+
+<https://bio.tools/ahtps> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_3335,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1007/S12539-022-00521-3>,
+        "pubmed:35474167" ;
+    sc:description "Accurate prediction of anti-hypertensive peptides based on convolutional neural network and gated recurrent unit" ;
+    sc:featureList edam:operation_0267,
+        edam:operation_0433,
+        edam:operation_3927 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "AHTPs" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://ahtps.zhanglab.site/" .
+
 <https://bio.tools/ai-biopsy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0634,
@@ -85200,7 +70623,7 @@ For accurate results, we recommend the use of axial images with a visible prosta
     sc:url "https://ai-biopsy.eipm-research.org" .
 
 <https://bio.tools/ai-ct-covid-19> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3384,
@@ -85212,7 +70635,7 @@ For accurate results, we recommend the use of axial images with a visible prosta
     sc:url "http://www.ai-ct-covid.team/" .
 
 <https://bio.tools/ai-driver> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
@@ -85229,7 +70652,7 @@ For accurate results, we recommend the use of axial images with a visible prosta
     sc:url "http://aidriver.maolab.org/" .
 
 <https://bio.tools/ai4amp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
@@ -85243,7 +70666,7 @@ For accurate results, we recommend the use of axial images with a visible prosta
     sc:url "http://symbiosis.iis.sinica.edu.tw/PC_6/" .
 
 <https://bio.tools/aiap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3393,
@@ -85262,7 +70685,7 @@ For accurate results, we recommend the use of axial images with a visible prosta
     sc:url "https://github.com/Zhang-lab/ATAC-seq_QC_analysis" .
 
 <https://bio.tools/aibench> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3474 ;
     sc:citation "pubmed:20047774" ;
@@ -85275,7 +70698,7 @@ For accurate results, we recommend the use of axial images with a visible prosta
     sc:url "http://www.aibench.org/" .
 
 <https://bio.tools/aida> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0154,
@@ -85303,7 +70726,7 @@ For accurate results, we recommend the use of axial images with a visible prosta
     biotools:primaryContact "Adam Godzik" .
 
 <https://bio.tools/aidd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0769,
@@ -85319,8 +70742,30 @@ For accurate results, we recommend the use of axial images with a visible prosta
     sc:name "AIDD" ;
     sc:url "https://github.com/RNAdetective/AIDD" .
 
+<https://bio.tools/aide-image> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workbench" ;
+    sc:applicationSubCategory edam:topic_0749,
+        edam:topic_2640,
+        edam:topic_3384,
+        edam:topic_3444,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1038/S41467-021-26216-9>,
+        "pmcid:PMC8501087",
+        "pubmed:34625565" ;
+    sc:description "AIDE (Annotation-effIcient Deep lEarning) is a deep learning framework for automatic medical image segmentation with imperfect datasets, including those having limited annotations, lacking target domain annotations, and containing noisy annotations. Automatic segmentation of medical images plays an essential role in both scientific research and medical care. Deep learning approaches have presented encouraging performances, but existing high-performance methods typically rely on very large training datasets with high-quality manual annotations, which are normally difficult or even impossible to obtain in many clinical applications." ;
+    sc:featureList edam:operation_3435,
+        edam:operation_3443,
+        edam:operation_3553 ;
+    sc:license "LGPL-2.1" ;
+    sc:name "AIDE" ;
+    sc:url "https://github.com/lich0031/AIDE" ;
+    biotools:primaryContact <https://orcid.org/0000-0001-5400-2093>,
+        <https://orcid.org/0000-0002-0575-6523>,
+        <https://orcid.org/0000-0002-8558-5102> .
+
 <https://bio.tools/aideveloper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3382,
@@ -85337,7 +70782,7 @@ For accurate results, we recommend the use of axial images with a visible prosta
     sc:url "https://github.com/maikherbig/AIDeveloper" .
 
 <https://bio.tools/aidrug2cov> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0202,
         edam:topic_3336,
@@ -85350,7 +70795,7 @@ For accurate results, we recommend the use of axial images with a visible prosta
     sc:url "https://github.com/pengsl-lab/AIdrug2cov" .
 
 <https://bio.tools/aidrugapp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0209,
@@ -85365,7 +70810,7 @@ For accurate results, we recommend the use of axial images with a visible prosta
     sc:url "https://sars-covid-app.herokuapp.com/" .
 
 <https://bio.tools/aiida> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2258,
         edam:topic_3332,
@@ -85386,7 +70831,7 @@ For accurate results, we recommend the use of axial images with a visible prosta
     biotools:primaryContact "Andrius Merkys" .
 
 <https://bio.tools/ailde> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2275,
         edam:topic_3299,
@@ -85405,7 +70850,7 @@ For accurate results, we recommend the use of axial images with a visible prosta
     sc:url "http://chemyang.ccnu.edu.cn/ccb/server/AILDE" .
 
 <https://bio.tools/aim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3518 ;
     sc:citation "pubmed:15376910" ;
@@ -85419,8 +70864,30 @@ For accurate results, we recommend the use of axial images with a visible prosta
     sc:softwareHelp <https://bibiserv.cebitec.uni-bielefeld.de/aim> ;
     sc:url "http://bibiserv.techfak.uni-bielefeld.de/aim/" .
 
+<https://bio.tools/aime> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0602,
+        edam:topic_0659,
+        edam:topic_2640,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1371/JOURNAL.PCBI.1009826>,
+        "pmcid:PMC8820645",
+        "pubmed:35081109" ;
+    sc:description "Autoencoder-based integrative multi-omics data embedding that allows for confounder adjustments." ;
+    sc:featureList edam:operation_0463,
+        edam:operation_3792,
+        edam:operation_3891 ;
+    sc:isAccessibleForFree true ;
+    sc:name "AIME" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/tianwei-yu/AIME" .
+
 <https://bio.tools/aimee> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0632,
         edam:topic_0749,
@@ -85443,7 +70910,7 @@ For accurate results, we recommend the use of axial images with a visible prosta
     sc:url "https://github.com/SIAT-code/AIMEE" .
 
 <https://bio.tools/aimera> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_0749,
@@ -85458,16 +70925,39 @@ For accurate results, we recommend the use of axial images with a visible prosta
     sc:softwareHelp <https://github.com/bioinfo-ircm/aiMeRA/raw/master/vignette/aiMeRA_Manual.pdf> ;
     sc:url "https://github.com/bioinfo-ircm/aiMeRA/" .
 
+<https://bio.tools/aimodules> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Desktop application",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0621,
+        edam:topic_0659,
+        edam:topic_0749,
+        edam:topic_3169,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.21203/RS.3.RS-1284479/V1> ;
+    sc:description "AIModules enables you to find transcription factor binding sites (TFBSs) and modules on DNA using own matrices or the JASPAR 2022 database." ;
+    sc:featureList edam:operation_0238,
+        edam:operation_0239,
+        edam:operation_0337,
+        edam:operation_0445 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-2.0" ;
+    sc:name "AIModules" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://bioinfo-wuerz.de/aimodules/" .
+
 <https://bio.tools/aims> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0928" ;
-            sc:name "Gene expression profile" ;
-            sc:sameAs "http://edamontology.org/data_0928" ] ;
+            sc:additionalType "http://edamontology.org/data_0928" ;
+            sc:encodingFormat "http://edamontology.org/format_2058" ;
+            sc:name "Gene expression profile" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1622" ;
-            sc:name "Disease report" ;
-            sc:sameAs "http://edamontology.org/data_1622" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1622" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Disease report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -85487,7 +70977,7 @@ For accurate results, we recommend the use of axial images with a visible prosta
     biotools:primaryContact "Eric R Paquet" .
 
 <https://bio.tools/aipw> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3305,
@@ -85506,7 +70996,7 @@ For accurate results, we recommend the use of axial images with a visible prosta
     sc:url "https://github.com/yqzhong7/AIPW" .
 
 <https://bio.tools/air> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0625,
@@ -85523,7 +71013,7 @@ For accurate results, we recommend the use of axial images with a visible prosta
     sc:url "https://air.elixir-luxembourg.org" .
 
 <https://bio.tools/airbp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0128,
@@ -85539,7 +71029,7 @@ For accurate results, we recommend the use of axial images with a visible prosta
     sc:url "http://cs.uno.edu/~tamjid/Software.html" .
 
 <https://bio.tools/aird> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3318,
         edam:topic_3360,
         edam:topic_3520 ;
@@ -85553,7 +71043,7 @@ AirdPro is opensource under the MulanPSL2 license.""" ;
     sc:url "https://github.com/Propro-Studio/Aird-SDK" .
 
 <https://bio.tools/airlab> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_2830,
@@ -85572,7 +71062,7 @@ AirdPro is opensource under the MulanPSL2 license.""" ;
     biotools:primaryContact "Support" .
 
 <https://bio.tools/airlift> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_2885,
@@ -85585,8 +71075,30 @@ AirdPro is opensource under the MulanPSL2 license.""" ;
     sc:name "AirLift" ;
     sc:url "https://github.com/CMU-SAFARI/AirLift" .
 
+<https://bio.tools/airpart> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0199,
+        edam:topic_0203,
+        edam:topic_2229,
+        edam:topic_3170,
+        edam:topic_3452 ;
+    sc:author <https://orcid.org/0000-0002-5061-7581> ;
+    sc:citation <https://doi.org/10.1101/2021.10.15.464546> ;
+    sc:contributor <https://orcid.org/0000-0001-8401-0545> ;
+    sc:description "Airpart identifies sets of genes displaying differential cell-type-specific allelic imbalance across cell types or states, utilizing single-cell allelic counts. It makes use of a generalized fused lasso with binomial observations of allelic counts to partition cell types by their allelic imbalance. Alternatively, a nonparametric method for partitioning cell types is offered. The package includes a number of visualizations and quality control functions for examining single cell allelic imbalance datasets." ;
+    sc:featureList edam:operation_3197,
+        edam:operation_3658,
+        edam:operation_3659,
+        edam:operation_3799 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-2.0" ;
+    sc:name "airpart" ;
+    sc:url "https://bioconductor.org/packages/airpart" ;
+    biotools:primaryContact <https://orcid.org/0000-0002-5061-7581> .
+
 <https://bio.tools/airpg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0622,
@@ -85609,7 +71121,7 @@ AirdPro is opensource under the MulanPSL2 license.""" ;
     sc:url "http://pypi.python.org/pypi/airpg" .
 
 <https://bio.tools/aiscaffold> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0209,
@@ -85625,7 +71137,7 @@ AirdPro is opensource under the MulanPSL2 license.""" ;
     sc:url "https://iaidrug.stonewise.cn/" .
 
 <https://bio.tools/aiso> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_3383 ;
@@ -85641,7 +71153,7 @@ AirdPro is opensource under the MulanPSL2 license.""" ;
     sc:url "http://www.plantontology.org/software/aiso" .
 
 <https://bio.tools/aitac> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0625,
@@ -85658,7 +71170,7 @@ AirdPro is opensource under the MulanPSL2 license.""" ;
     sc:url "https://github.com/BDanalysis/aitac" .
 
 <https://bio.tools/aitl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0208,
         edam:topic_2640,
@@ -85674,7 +71186,7 @@ AirdPro is opensource under the MulanPSL2 license.""" ;
     sc:url "https://github.com/hosseinshn/AITL" .
 
 <https://bio.tools/aizynthfinder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_3047,
@@ -85688,7 +71200,7 @@ AirdPro is opensource under the MulanPSL2 license.""" ;
     sc:url "http://www.github.com/MolecularAI/aizynthfinder" .
 
 <https://bio.tools/akdeseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3168 ;
@@ -85705,14 +71217,12 @@ AirdPro is opensource under the MulanPSL2 license.""" ;
 
 <https://bio.tools/akid> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2974" ;
-            sc:name "Protein sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_2974" ] ;
+            sc:additionalType "http://edamontology.org/data_2974" ;
+            sc:name "Protein sequence (raw)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:name "Protein features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -85731,7 +71241,7 @@ AirdPro is opensource under the MulanPSL2 license.""" ;
     biotools:primaryContact "Luca Parca" .
 
 <https://bio.tools/aklimate> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0625,
@@ -85748,7 +71258,7 @@ AirdPro is opensource under the MulanPSL2 license.""" ;
     sc:url "https://github.com/VladoUzunangelov/aklimate" .
 
 <https://bio.tools/aksmooth> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0749,
@@ -85764,7 +71274,7 @@ AirdPro is opensource under the MulanPSL2 license.""" ;
     sc:url "https://github.com/Junfang/AKSmooth" .
 
 <https://bio.tools/al3c> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3316,
         edam:topic_3500,
@@ -85781,7 +71291,7 @@ AirdPro is opensource under the MulanPSL2 license.""" ;
     biotools:primaryContact "Alexander H. Stram" .
 
 <https://bio.tools/aladyn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0166,
@@ -85803,7 +71313,7 @@ AirdPro is opensource under the MulanPSL2 license.""" ;
     biotools:primaryContact "T. Aleksiev" .
 
 <https://bio.tools/alamut> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -85824,7 +71334,7 @@ AirdPro is opensource under the MulanPSL2 license.""" ;
     sc:url "http://www.interactive-biosoftware.com/products/" .
 
 <https://bio.tools/albatradis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0203,
@@ -85844,7 +71354,7 @@ AirdPro is opensource under the MulanPSL2 license.""" ;
     sc:url "https://github.com/quadram-institute-bioscience/albatradis" .
 
 <https://bio.tools/albert> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3053,
@@ -85857,7 +71367,7 @@ AirdPro is opensource under the MulanPSL2 license.""" ;
     sc:url "http://www.stat.washington.edu/thompson/Genepi/Albert/albert.shtml" .
 
 <https://bio.tools/alchemy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2885,
@@ -85873,7 +71383,7 @@ AirdPro is opensource under the MulanPSL2 license.""" ;
     sc:url "http://alchemy.sourceforge.net/" .
 
 <https://bio.tools/alder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3056 ;
     sc:citation <https://doi.org/10.1534/genetics.112.147330> ;
@@ -85888,14 +71398,14 @@ AirdPro is opensource under the MulanPSL2 license.""" ;
 
 <https://bio.tools/aldex2> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0928" ;
-            sc:name "Gene expression profile" ;
-            sc:sameAs "http://edamontology.org/data_0928" ] ;
+            sc:additionalType "http://edamontology.org/data_0928" ;
+            sc:encodingFormat "http://edamontology.org/format_2058" ;
+            sc:name "Gene expression profile" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0951" ;
-            sc:name "Statistical estimate score" ;
-            sc:sameAs "http://edamontology.org/data_0951" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0951" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Statistical estimate score" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -85915,7 +71425,7 @@ AirdPro is opensource under the MulanPSL2 license.""" ;
     biotools:primaryContact <http://orcid.org/0000-0001-5803-3380> .
 
 <https://bio.tools/ale> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3077 ;
@@ -85931,7 +71441,7 @@ AirdPro is opensource under the MulanPSL2 license.""" ;
     biotools:primaryContact "Jonathan D. Wren" .
 
 <https://bio.tools/alea> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3307 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btt744> ;
@@ -85946,7 +71456,7 @@ AirdPro is opensource under the MulanPSL2 license.""" ;
     biotools:primaryContact "Hamid Younesy" .
 
 <https://bio.tools/aleaves> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0084,
@@ -85968,7 +71478,7 @@ AirdPro is opensource under the MulanPSL2 license.""" ;
     biotools:primaryContact "Shigehiro Kuraku" .
 
 <https://bio.tools/ales> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2269 ;
     sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAA945>,
         "pubmed:34107042" ;
@@ -85982,7 +71492,7 @@ AirdPro is opensource under the MulanPSL2 license.""" ;
     sc:url "http://github.com/lucian-ilie/ALeS" .
 
 <https://bio.tools/alexa-seq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_3320 ;
     sc:citation "pubmed:20835245" ;
@@ -85997,7 +71507,7 @@ AirdPro is opensource under the MulanPSL2 license.""" ;
         "Marco A. Marra" .
 
 <https://bio.tools/alfanet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0602,
@@ -86021,8 +71531,30 @@ AirdPro is opensource under the MulanPSL2 license.""" ;
     sc:softwareHelp <http://bioinfo.usu.edu/alfanet/help.html> ;
     sc:url "http://bioinfo.usu.edu/alfanet/" .
 
+<https://bio.tools/alfatclust> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Library" ;
+    sc:applicationSubCategory edam:topic_0080,
+        edam:topic_0623,
+        edam:topic_0749,
+        edam:topic_3174 ;
+    sc:citation <https://doi.org/10.1186/S12859-022-04643-9>,
+        "pmcid:PMC8969259",
+        "pubmed:35354426" ;
+    sc:description "A biological sequence clustering tool with dynamic threshold" ;
+    sc:featureList edam:operation_0289,
+        edam:operation_0291,
+        edam:operation_0491 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "ALFATClust" ;
+    sc:operatingSystem "Linux",
+        "Windows" ;
+    sc:url "https://github.com/phglab/ALFATClust" .
+
 <https://bio.tools/alfie> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0621,
@@ -86042,14 +71574,14 @@ AirdPro is opensource under the MulanPSL2 license.""" ;
 
 <https://bio.tools/alfred> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1916" ;
-            sc:name "Alignment" ;
-            sc:sameAs "http://edamontology.org/data_1916" ] ;
+            sc:additionalType "http://edamontology.org/data_1916" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Alignment" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2526" ;
-            sc:name "Text data" ;
-            sc:sameAs "http://edamontology.org/data_2526" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2526" ;
+            sc:encodingFormat "http://edamontology.org/format_3464" ;
+            sc:name "Text data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0091,
@@ -86072,7 +71604,7 @@ AirdPro is opensource under the MulanPSL2 license.""" ;
     sc:url "https://github.com/tobiasrausch/alfred" .
 
 <https://bio.tools/alfred-g> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3293,
@@ -86091,7 +71623,7 @@ AirdPro is opensource under the MulanPSL2 license.""" ;
     biotools:primaryContact "Sharma V. Thankachan" .
 
 <https://bio.tools/alfresco> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654 ;
@@ -86112,7 +71644,7 @@ AirdPro is opensource under the MulanPSL2 license.""" ;
     biotools:primaryContact "Niclas Jareborg" .
 
 <https://bio.tools/alfy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation "pubmed:21471011" ;
@@ -86126,7 +71658,7 @@ AirdPro is opensource under the MulanPSL2 license.""" ;
     sc:url "http://guanine.evolbio.mpg.de/alfy/" .
 
 <https://bio.tools/algaefun> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3169,
@@ -86148,7 +71680,7 @@ AirdPro is opensource under the MulanPSL2 license.""" ;
     sc:url "https://greennetwork.us.es/AlgaeFUN/" .
 
 <https://bio.tools/algaepath> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0780,
@@ -86169,7 +71701,7 @@ AirdPro is opensource under the MulanPSL2 license.""" ;
     biotools:primaryContact "Support" .
 
 <https://bio.tools/alggen> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0203,
@@ -86196,7 +71728,7 @@ AirdPro is opensource under the MulanPSL2 license.""" ;
     biotools:primaryContact "Xavier Messeguer Peypoch" .
 
 <https://bio.tools/algpred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -86206,19 +71738,30 @@ AirdPro is opensource under the MulanPSL2 license.""" ;
     sc:citation "pubmed:16844994" ;
     sc:description "Predicts allergenic proteins and maps IgE epitopes on allergenic proteins using several different approaches." ;
     sc:featureList edam:operation_0252,
-        edam:operation_0331,
         edam:operation_0416,
-        edam:operation_2429 ;
+        edam:operation_2429,
+        edam:operation_3429 ;
     sc:name "AlgPred" ;
     sc:operatingSystem "Linux",
         "Mac",
         "Windows" ;
     sc:softwareHelp <http://crdd.osdd.net/raghava/algpred/help.html> ;
-    sc:url "http://www.imtech.res.in/raghava/algpred/" ;
+    sc:url "http://webs.iiitd.edu.in/raghava/algpred/" ;
     biotools:primaryContact "G. P. S. Raghava" .
 
+<https://bio.tools/algpred2> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:citation "pubmed:33201237" ;
+    sc:description "AlgPred 2.0 is an updated version of our old server AlgPred developed for predicting allergenic proteins" ;
+    sc:featureList edam:operation_1777 ;
+    sc:name "algpred2" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/algpred2/> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/algpred2/" .
+
 <https://bio.tools/alias> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -86234,7 +71777,7 @@ AirdPro is opensource under the MulanPSL2 license.""" ;
     sc:url "http://cbi.labri.fr/outils/alias/" .
 
 <https://bio.tools/alibaseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0194,
@@ -86255,7 +71798,7 @@ AirdPro is opensource under the MulanPSL2 license.""" ;
     biotools:primaryContact "Alexander Knyshov" .
 
 <https://bio.tools/alice> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite",
         "Web application" ;
     sc:applicationSubCategory edam:topic_3304,
@@ -86267,7 +71810,7 @@ AirdPro is opensource under the MulanPSL2 license.""" ;
     biotools:primaryContact <https://orcid.org/0000-0002-0034-0326> .
 
 <https://bio.tools/aliclu> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3168,
@@ -86283,7 +71826,7 @@ AirdPro is opensource under the MulanPSL2 license.""" ;
     sc:url "https://kishanrama.github.io/AliClu/" .
 
 <https://bio.tools/alico> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0080,
@@ -86304,18 +71847,18 @@ AirdPro is opensource under the MulanPSL2 license.""" ;
 
 <https://bio.tools/alientrimmer> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3497" ;
-            sc:name "DNA sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_3497" ],
+            sc:additionalType "http://edamontology.org/data_3497" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "DNA sequence (raw)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3497" ;
-            sc:name "DNA sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_3497" ] ;
+            sc:additionalType "http://edamontology.org/data_3497" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "DNA sequence (raw)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3497" ;
-            sc:name "DNA sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_3497" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3497" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "DNA sequence (raw)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:author "Alexis Criscuolo" ;
@@ -86339,7 +71882,7 @@ AirdPro is opensource under the MulanPSL2 license.""" ;
     biotools:primaryContact "Alexis Criscuolo" .
 
 <https://bio.tools/alifritz> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0084,
@@ -86356,22 +71899,22 @@ AirdPro is opensource under the MulanPSL2 license.""" ;
 
 <https://bio.tools/align> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ],
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein structure" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_1984" ;
+            sc:name "Protein sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0869" ;
-            sc:name "Sequence-profile alignment" ;
-            sc:sameAs "http://edamontology.org/data_0869" ],
+            sc:additionalType "http://edamontology.org/data_0869" ;
+            sc:encodingFormat "http://edamontology.org/format_1984" ;
+            sc:name "Sequence-profile alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1384" ;
-            sc:name "Sequence alignment (protein)" ;
-            sc:sameAs "http://edamontology.org/data_1384" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1384" ;
+            sc:encodingFormat "http://edamontology.org/format_1984" ;
+            sc:name "Sequence alignment (protein)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.2174/157016306780136754>,
@@ -86392,7 +71935,7 @@ AirdPro is opensource under the MulanPSL2 license.""" ;
     biotools:primaryContact <http://orcid.org/0000-0003-4525-7793> .
 
 <https://bio.tools/align-gvgd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0199,
@@ -86417,7 +71960,7 @@ AirdPro is opensource under the MulanPSL2 license.""" ;
         "Sean Tavtigian" .
 
 <https://bio.tools/align-m> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0154,
@@ -86436,7 +71979,7 @@ AirdPro is opensource under the MulanPSL2 license.""" ;
     biotools:primaryContact "Ivo Van Walle" .
 
 <https://bio.tools/align-paths> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0085,
         edam:topic_0602 ;
@@ -86446,13 +71989,13 @@ AirdPro is opensource under the MulanPSL2 license.""" ;
     sc:isAccessibleForFree true ;
     sc:license "MIT" ;
     sc:name "Align-paths" ;
-    sc:softwareHelp <https://github.com/BioDAG/align-paths/blob/master/README.md> ;
+    sc:softwareHelp <https://github.com/BiodataAnalysisGroup/align-paths/blob/master/README.md> ;
     sc:softwareVersion "1.0" ;
     sc:url "https://github.com/BiodataAnalysisGroup/align-paths" ;
     biotools:primaryContact <https://orcid.org/0000-0002-0222-4273> .
 
 <https://bio.tools/align3d> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0654,
         edam:topic_3382 ;
@@ -86468,7 +72011,7 @@ AirdPro is opensource under the MulanPSL2 license.""" ;
     sc:url "https://github.com/heltilda/align3d" .
 
 <https://bio.tools/alignace> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0654,
@@ -86489,7 +72032,7 @@ AirdPro is opensource under the MulanPSL2 license.""" ;
         "Zhou Zhu (questions or comments)" .
 
 <https://bio.tools/alignbucket> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3510 ;
@@ -86504,14 +72047,12 @@ AirdPro is opensource under the MulanPSL2 license.""" ;
 
 <https://bio.tools/aligncopy> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:name "Sequence alignment" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:name "Sequence alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -86542,14 +72083,12 @@ AirdPro is opensource under the MulanPSL2 license.""" ;
 
 <https://bio.tools/aligncopypair> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:name "Sequence alignment" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1381" ;
-            sc:name "Sequence alignment (pair)" ;
-            sc:sameAs "http://edamontology.org/data_1381" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1381" ;
+            sc:name "Sequence alignment (pair)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -86579,7 +72118,7 @@ AirdPro is opensource under the MulanPSL2 license.""" ;
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/aligncopypair.html" .
 
 <https://bio.tools/alignet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0121,
@@ -86597,7 +72136,7 @@ AirdPro is opensource under the MulanPSL2 license.""" ;
     sc:url "https://github.com/biocom-uib/AligNet" .
 
 <https://bio.tools/aligngraph> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0196 ;
@@ -86612,7 +72151,7 @@ AirdPro is opensource under the MulanPSL2 license.""" ;
     sc:url "https://github.com/baoe/AlignGraph" .
 
 <https://bio.tools/aligngraph2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0769 ;
@@ -86628,7 +72167,7 @@ AirdPro is opensource under the MulanPSL2 license.""" ;
     sc:url "https://github.com/huangs001/AlignGraph2" .
 
 <https://bio.tools/alignme> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -86654,7 +72193,7 @@ AirdPro is opensource under the MulanPSL2 license.""" ;
     biotools:primaryContact "AlignMe Support" .
 
 <https://bio.tools/alignment-annotator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0092,
@@ -86677,14 +72216,14 @@ AirdPro is opensource under the MulanPSL2 license.""" ;
 
 <https://bio.tools/alignmentcomparator> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1433" ;
+            sc:name "Sequence alignment" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_3160" ;
+            sc:name "Sequence alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3070,
@@ -86706,7 +72245,7 @@ AirdPro is opensource under the MulanPSL2 license.""" ;
     biotools:primaryContact "Ben Stöver" .
 
 <https://bio.tools/alignmentviewer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0084,
         edam:topic_0160,
@@ -86724,7 +72263,7 @@ AirdPro is opensource under the MulanPSL2 license.""" ;
     sc:url "http://alignmentviewer.org" .
 
 <https://bio.tools/alignparse> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
         edam:topic_0199,
@@ -86746,7 +72285,7 @@ alignparse is a Python package written by the Bloom lab. It is designed to align
     sc:url "https://jbloomlab.github.io/alignparse" .
 
 <https://bio.tools/alignsec> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0092,
@@ -86763,7 +72302,7 @@ alignparse is a Python package written by the Bloom lab. It is designed to align
     biotools:primaryContact "Gilbert Deleage" .
 
 <https://bio.tools/alignstat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -86783,8 +72322,19 @@ alignparse is a Python package written by the Bloom lab. It is designed to align
     sc:url "http://alignstat.science.latrobe.edu.au/" ;
     biotools:primaryContact <http://orcid.org/0000-0002-2298-7593> .
 
+<https://bio.tools/alignstein> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0121 ;
+    sc:description "LC-MS alignment algorithm based on Wasserstein distance." ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "Alignstein" ;
+    sc:softwareVersion "0.9" ;
+    sc:url "https://github.com/grzsko/Alignstein" .
+
 <https://bio.tools/alion> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:description "ALION is a sequence alignment tool. Aligns two protein sequences using Needleman-Wunsch global alignment or Smith-Waterman local alignment methods with variable gap penalties and amino acid substitution matrices. Analogous to GCG GAP and BESTFIT programs." ;
@@ -86798,7 +72348,7 @@ alignparse is a Python package written by the Bloom lab. It is designed to align
     sc:url "http://motif.stanford.edu/distributions/alion/" .
 
 <https://bio.tools/alkaligrass> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0749,
@@ -86817,22 +72367,18 @@ A high-quality chromosome-level genome sequence of alkaligrass assembled from Il
 
 <https://bio.tools/alkemio> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1086" ;
-            sc:name "Compound identifier" ;
-            sc:sameAs "http://edamontology.org/data_1086" ],
+            sc:additionalType "http://edamontology.org/data_1088" ;
+            sc:name "Article ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0968" ;
-            sc:name "Keyword" ;
-            sc:sameAs "http://edamontology.org/data_0968" ],
+            sc:additionalType "http://edamontology.org/data_0968" ;
+            sc:name "Keyword" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1088" ;
-            sc:name "Article ID" ;
-            sc:sameAs "http://edamontology.org/data_1088" ] ;
+            sc:additionalType "http://edamontology.org/data_1086" ;
+            sc:name "Compound identifier" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0962" ;
-            sc:name "Small molecule report" ;
-            sc:sameAs "http://edamontology.org/data_0962" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0962" ;
+            sc:name "Small molecule report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Web service" ;
     sc:applicationSubCategory edam:topic_3473 ;
@@ -86848,7 +72394,7 @@ A high-quality chromosome-level genome sequence of alkaligrass assembled from Il
     biotools:primaryContact "Jean Fred Fontaine" .
 
 <https://bio.tools/all-p> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3321 ;
@@ -86864,8 +72410,25 @@ A high-quality chromosome-level genome sequence of alkaligrass assembled from Il
     sc:softwareHelp <http://pappso.inra.fr/bioinfo/all_p/download.php> ;
     sc:url "http://pappso.inra.fr/bioinfo/all_p/index.php" .
 
+<https://bio.tools/all2> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0199,
+        edam:topic_0622,
+        edam:topic_3676 ;
+    sc:citation <https://doi.org/10.1101/2021.09.29.462281> ;
+    sc:description "All2 is a tool for filtering variants from all2all comparison of multiple clones or single cells. There are no variant allele frequency and mutation spectrum plots for structural variant mode and the format of the output files will be slightly different from the SNV/INDEL analyses." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3227,
+        edam:operation_3675 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "All2" ;
+    sc:url "https://github.com/abyzovlab/All2" ;
+    biotools:primaryContact "Alexej Abyzov" .
+
 <https://bio.tools/allcopol> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Suite" ;
     sc:applicationSubCategory edam:topic_0084,
@@ -86883,7 +72446,7 @@ A high-quality chromosome-level genome sequence of alkaligrass assembled from Il
     sc:url "https://github.com/AGOberprieler/allcopol" .
 
 <https://bio.tools/allegro> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654,
@@ -86899,7 +72462,7 @@ A high-quality chromosome-level genome sequence of alkaligrass assembled from Il
     sc:url "http://acgt.cs.tau.ac.il/allegro/" .
 
 <https://bio.tools/allele_frequency_net> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0208,
@@ -86921,7 +72484,7 @@ A high-quality chromosome-level genome sequence of alkaligrass assembled from Il
     biotools:primaryContact "Support" .
 
 <https://bio.tools/alleleretain> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3056,
         edam:topic_3299 ;
@@ -86936,7 +72499,7 @@ A high-quality chromosome-level genome sequence of alkaligrass assembled from Il
     sc:url "https://sites.google.com/site/alleleretain/" .
 
 <https://bio.tools/alleleshift> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3056 ;
     sc:citation <https://doi.org/10.7717/PEERJ.11534>,
@@ -86955,7 +72518,7 @@ A high-quality chromosome-level genome sequence of alkaligrass assembled from Il
     sc:url "https://github.com/RoelandKindt/AlleleShift" .
 
 <https://bio.tools/allelic_inclusion> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_2269,
@@ -86968,7 +72531,7 @@ A high-quality chromosome-level genome sequence of alkaligrass assembled from Il
     sc:url "https://github.com/JasonACarter/Allelic_inclusion" .
 
 <https://bio.tools/allelicimbalance> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3168,
@@ -86990,7 +72553,7 @@ A high-quality chromosome-level genome sequence of alkaligrass assembled from Il
     biotools:primaryContact "Jesper R Gadin" .
 
 <https://bio.tools/allen_brain_atlas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3304,
@@ -87015,7 +72578,7 @@ A high-quality chromosome-level genome sequence of alkaligrass assembled from Il
     biotools:primaryContact "Contact Form" .
 
 <https://bio.tools/allen_brain_atlas-api> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API" ;
     sc:applicationSubCategory edam:topic_0203 ;
     sc:citation <https://doi.org/10.1038/nature05453> ;
@@ -87030,7 +72593,7 @@ A high-quality chromosome-level genome sequence of alkaligrass assembled from Il
     sc:url "http://help.brain-map.org/display/api/RESTful+Model+Access+%28RMA%29" .
 
 <https://bio.tools/allenricher> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0203,
@@ -87049,8 +72612,33 @@ A high-quality chromosome-level genome sequence of alkaligrass assembled from Il
     sc:name "AllEnricher" ;
     sc:url "https://github.com/zd105/AllEnricher" .
 
+<https://bio.tools/allercatpro> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0130,
+        edam:topic_0154,
+        edam:topic_0601,
+        edam:topic_0804,
+        edam:topic_3400 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAC446>,
+        "pmcid:PMC9252832",
+        "pubmed:35640594" ;
+    sc:description "A web server for predicting protein allergenicity potential." ;
+    sc:featureList edam:operation_0252,
+        edam:operation_0474,
+        edam:operation_3092 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "AllerCatPro" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://allercatpro.bii.a-star.edu.sg/help.html> ;
+    sc:softwareVersion "2.0" ;
+    sc:url "https://allercatpro.bii.a-star.edu.sg" .
+
 <https://bio.tools/allerdictor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_3307,
         edam:topic_3510 ;
@@ -87066,7 +72654,7 @@ A high-quality chromosome-level genome sequence of alkaligrass assembled from Il
     biotools:primaryContact "Ha Dang" .
 
 <https://bio.tools/allergenfp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_3307 ;
@@ -87084,14 +72672,13 @@ A high-quality chromosome-level genome sequence of alkaligrass assembled from Il
 
 <https://bio.tools/allergome> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0842" ;
-            sc:name "Identifier" ;
-            sc:sameAs "http://edamontology.org/data_0842" ] ;
+            sc:additionalType "http://edamontology.org/data_0842" ;
+            sc:name "Identifier" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0804 ;
     sc:citation <https://doi.org/10.1007/s11882-009-0055-9>,
@@ -87106,7 +72693,7 @@ A high-quality chromosome-level genome sequence of alkaligrass assembled from Il
     sc:url "http://www.allergome.org/" .
 
 <https://bio.tools/allertop> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_1775 ;
@@ -87122,7 +72709,7 @@ A high-quality chromosome-level genome sequence of alkaligrass assembled from Il
     biotools:primaryContact "Drug Design Group" .
 
 <https://bio.tools/allestm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0154,
@@ -87142,8 +72729,25 @@ A high-quality chromosome-level genome sequence of alkaligrass assembled from Il
     sc:name "AllesTM" ;
     sc:url "https://github.com/phngs/allestm" .
 
+<https://bio.tools/allhic> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_3473,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1038/s41477-019-0487-8>,
+        "pubmed:31383970" ;
+    sc:description "Genome scaffolding based on HiC data in heterozygous and high ploidy genomes" ;
+    sc:featureList edam:operation_3216 ;
+    sc:isAccessibleForFree true ;
+    sc:license "BSD-2-Clause" ;
+    sc:name "allhic" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/tanghaibao/allhic" .
+
 <https://bio.tools/alliance-genome> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0621,
@@ -87161,7 +72765,7 @@ A high-quality chromosome-level genome sequence of alkaligrass assembled from Il
     sc:url "http://www.alliancegenome.org" .
 
 <https://bio.tools/allim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0622,
@@ -87182,7 +72786,7 @@ A high-quality chromosome-level genome sequence of alkaligrass assembled from Il
         "Susanne U. Franssen" .
 
 <https://bio.tools/allofinder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0602,
@@ -87198,7 +72802,7 @@ A high-quality chromosome-level genome sequence of alkaligrass assembled from Il
     sc:url "http://mdl.shsmu.edu.cn/ALF/" .
 
 <https://bio.tools/allopred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_3534 ;
@@ -87219,7 +72823,7 @@ A high-quality chromosome-level genome sequence of alkaligrass assembled from Il
     biotools:primaryContact <http://orcid.org/0000-0002-5154-1929> .
 
 <https://bio.tools/alloscore> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0128,
@@ -87238,7 +72842,7 @@ A high-quality chromosome-level genome sequence of alkaligrass assembled from Il
     sc:url "http://mdl.shsmu.edu.cn/alloscore/" .
 
 <https://bio.tools/allosigma> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0632,
@@ -87256,7 +72860,7 @@ A high-quality chromosome-level genome sequence of alkaligrass assembled from Il
     sc:url "http://allosigma.bii.a-star.edu.sg" .
 
 <https://bio.tools/allosite> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082 ;
@@ -87272,7 +72876,7 @@ A high-quality chromosome-level genome sequence of alkaligrass assembled from Il
     sc:url "http://mdl.shsmu.edu.cn/AST/" .
 
 <https://bio.tools/allpaths> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196 ;
     sc:citation "pubmed:18340039" ;
@@ -87287,7 +72891,7 @@ A high-quality chromosome-level genome sequence of alkaligrass assembled from Il
     biotools:primaryContact "Contact Form" .
 
 <https://bio.tools/allpaths-lg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0199 ;
@@ -87306,7 +72910,7 @@ A high-quality chromosome-level genome sequence of alkaligrass assembled from Il
     biotools:primaryContact "David B. Jaffe" .
 
 <https://bio.tools/allsorts> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3170,
         edam:topic_3418 ;
@@ -87322,7 +72926,7 @@ A high-quality chromosome-level genome sequence of alkaligrass assembled from Il
     sc:url "https://github.com/Oshlack/AllSorts/" .
 
 <https://bio.tools/almost> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_1317,
         edam:topic_2275,
@@ -87335,7 +72939,7 @@ A high-quality chromosome-level genome sequence of alkaligrass assembled from Il
     sc:url "http://www-mvsoftware.ch.cam.ac.uk" .
 
 <https://bio.tools/almostsignificant> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3168,
         edam:topic_3393,
@@ -87352,8 +72956,28 @@ A high-quality chromosome-level genome sequence of alkaligrass assembled from Il
     sc:url "https://github.com/bartongroup/AlmostSignificant" ;
     biotools:primaryContact "Joe Ward" .
 
+<https://bio.tools/aln2tbl> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0084,
+        edam:topic_0102,
+        edam:topic_0196,
+        edam:topic_0621,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.1080/23802359.2021.1966334>,
+        "pmcid:PMC8386716",
+        "pubmed:34447886" ;
+    sc:description "Aln2tbl is a Python script for building a mitochondrial features table from a assembly alignment in fasta format. The sequencing, annotation and analysis of complete mitochondrial genomes is an important research tool in phylogeny and evolution. Starting with the primary sequence, genes features are generally annotated automatically to obtain preliminary annotations in the form of a feature table. Further manual curation in a graphic alignment editor is nevertheless necessary to revise annotations. As such, the automatically generated feature table is invalidated and has to be modified manually before submission to data banks." ;
+    sc:featureList edam:operation_0310,
+        edam:operation_0361,
+        edam:operation_3431 ;
+    sc:license "GPL-3.0" ;
+    sc:name "Aln2tbl" ;
+    sc:url "https://github.com/IMEDEA/mitogenomics" ;
+    biotools:primaryContact <https://orcid.org/0000-0002-4683-8840> .
+
 <https://bio.tools/alnc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0659,
@@ -87370,7 +72994,7 @@ A high-quality chromosome-level genome sequence of alkaligrass assembled from Il
     sc:url "http://nipgr.ac.in/AlnC" .
 
 <https://bio.tools/alntools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0203,
@@ -87387,7 +73011,7 @@ A high-quality chromosome-level genome sequence of alkaligrass assembled from Il
     sc:url "https://github.com/churchill-lab/alntools" .
 
 <https://bio.tools/alohomora> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0199,
@@ -87407,7 +73031,7 @@ A high-quality chromosome-level genome sequence of alkaligrass assembled from Il
     sc:url "http://gmc.mdc-berlin.de/alohomora/" .
 
 <https://bio.tools/alona> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -87428,7 +73052,7 @@ A high-quality chromosome-level genome sequence of alkaligrass assembled from Il
     sc:url "https://alona.panglaodb.se" .
 
 <https://bio.tools/alp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0622,
@@ -87443,7 +73067,7 @@ A high-quality chromosome-level genome sequence of alkaligrass assembled from Il
     sc:url "http://www.ncbi.nlm.nih.gov/CBBresearch/Spouge/html_ncbi/html/software/program.html?uid=6" .
 
 <https://bio.tools/alpha> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3293,
@@ -87460,7 +73084,7 @@ A high-quality chromosome-level genome sequence of alkaligrass assembled from Il
         "R A Leo Elworth" .
 
 <https://bio.tools/alpha-frag> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -87476,8 +73100,27 @@ A high-quality chromosome-level genome sequence of alkaligrass assembled from Il
     sc:name "Alpha-Frag" ;
     sc:url "http://www.github.com/YuAirLab/Alpha-Frag" .
 
+<https://bio.tools/alpha-tri> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workflow" ;
+    sc:applicationSubCategory edam:topic_0121,
+        edam:topic_0154,
+        edam:topic_3474,
+        edam:topic_3520 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAB878>,
+        "pubmed:34999750" ;
+    sc:description "A deep neural network for scoring the similarity between predicted and measured spectra improves peptide identification of DIA data." ;
+    sc:featureList edam:operation_3629,
+        edam:operation_3631,
+        edam:operation_3860 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "Alpha-Tri" ;
+    sc:operatingSystem "Windows" ;
+    sc:url "https://github.com/YuAirLab/Alpha-Tri" .
+
 <https://bio.tools/alpha-xic> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3474,
@@ -87491,7 +73134,7 @@ A high-quality chromosome-level genome sequence of alkaligrass assembled from Il
     sc:url "http://www.github.com/YuAirLab/Alpha-XIC" .
 
 <https://bio.tools/alphabet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0154,
@@ -87504,7 +73147,7 @@ A high-quality chromosome-level genome sequence of alkaligrass assembled from Il
     sc:url "http://motif.stanford.edu/distributions/alphabet/index.html" .
 
 <https://bio.tools/alphadrop> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_2885,
@@ -87519,8 +73162,38 @@ A high-quality chromosome-level genome sequence of alkaligrass assembled from Il
     sc:url "https://sites.google.com/site/hickeyjohn/alphadrop" ;
     biotools:primaryContact "John Hickey" .
 
+<https://bio.tools/alphafold_2> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_1964" ;
+            sc:name "Protein sequence" ] ;
+    bsc:output [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:name "Protein structure" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0130 ;
+    sc:citation <https://doi.org/10.1038/s41586-021-03819-2> ;
+    sc:description "AI-guided 3D structure prediction of novel proteins. AlphaFold uses neural networks to predict the tertiary (3D) structure of proteins. AlphaFold accepts an amino acid sequence as an input, which it will then will 'fold' into a 3D model." ;
+    sc:featureList edam:operation_0479,
+        edam:operation_0480,
+        edam:operation_0481,
+        edam:operation_2415 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Apache-2.0" ;
+    sc:name "AlphaFold 2" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://github.com/deepmind/alphafold> ;
+    sc:softwareVersion "2.0.1",
+        "2.1.0",
+        "2.1.1",
+        "2.1.2" ;
+    sc:url "https://github.com/deepmind/alphafold" .
+
 <https://bio.tools/alphaimpute> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3056 ;
     sc:citation <https://doi.org/10.1186/1297-9686-44-9> ;
@@ -87535,8 +73208,35 @@ A high-quality chromosome-level genome sequence of alkaligrass assembled from Il
     sc:softwareHelp <https://sites.google.com/site/hickeyjohn/alphaimpute> ;
     sc:url "https://sites.google.com/site/hickeyjohn/alphaimpute" .
 
+<https://bio.tools/alphaknot> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0080,
+        edam:topic_0121,
+        edam:topic_0736,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAC388>,
+        "pmcid:PMC9252816",
+        "pubmed:35609987" ;
+    sc:description "AlphaKnot is a server that measures entanglement in AlphaFold-solved protein models while considering pLDDT confidence values." ;
+    sc:featureList edam:operation_0278,
+        edam:operation_0303,
+        edam:operation_0477,
+        edam:operation_0570 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "AlphaKnot" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://alphaknot.cent.uw.edu.pl/api>,
+        <https://alphaknot.cent.uw.edu.pl/help_browse_search>,
+        <https://alphaknot.cent.uw.edu.pl/tutorial_analysis> ;
+    sc:url "https://alphaknot.cent.uw.edu.pl/" .
+
 <https://bio.tools/alphamalig> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:description "AlphaMALIG  (ALPHAbet Multiple ALIGnment) is a tool which allows you to align many but no more than 200 sequences. These sequences will be formed by characters of a finite alphabet." ;
@@ -87547,7 +73247,7 @@ A high-quality chromosome-level genome sequence of alkaligrass assembled from Il
     sc:url "http://alggen.lsi.upc.es/recerca/align/alphamalig/intro-alphamalig.html" .
 
 <https://bio.tools/alphamap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -87568,7 +73268,7 @@ A high-quality chromosome-level genome sequence of alkaligrass assembled from Il
     sc:url "https://github.com/MannLabs/alphamap" .
 
 <https://bio.tools/alphampsim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3053,
         edam:topic_3307,
@@ -87584,7 +73284,7 @@ A high-quality chromosome-level genome sequence of alkaligrass assembled from Il
     biotools:primaryContact "John Hickey" .
 
 <https://bio.tools/alphapart> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3053 ;
     sc:citation <https://doi.org/10.1101/2020.04.24.059071> ;
@@ -87596,7 +73296,7 @@ A high-quality chromosome-level genome sequence of alkaligrass assembled from Il
     sc:url "http://CRAN.R-project.org/package=AlphaPart" .
 
 <https://bio.tools/alphapept> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -87616,7 +73316,7 @@ A high-quality chromosome-level genome sequence of alkaligrass assembled from Il
     sc:url "https://github.com/MannLabs/alphapept" .
 
 <https://bio.tools/alphapred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -87630,11 +73330,11 @@ A high-quality chromosome-level genome sequence of alkaligrass assembled from Il
         "Mac",
         "Windows" ;
     sc:softwareHelp <http://crdd.osdd.net/raghava//alphapred/help.html> ;
-    sc:url "http://www.imtech.res.in/raghava/alphapred/" ;
+    sc:url "http://webs.iiitd.edu.in/raghava/alphapred/" ;
     biotools:primaryContact "Dr. G.P.S. Raghava" .
 
 <https://bio.tools/alphasimr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0780,
@@ -87650,7 +73350,7 @@ A high-quality chromosome-level genome sequence of alkaligrass assembled from Il
     sc:url "https://alphagenes.roslin.ed.ac.uk/wp/software-2/alphasimr/" .
 
 <https://bio.tools/alphaspace2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0128,
@@ -87669,7 +73369,7 @@ A high-quality chromosome-level genome sequence of alkaligrass assembled from Il
     sc:url "http://www.nyu.edu/projects/yzhang/AlphaSpace2" .
 
 <https://bio.tools/alphatims> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0769,
@@ -87688,7 +73388,7 @@ High-resolution MS-based proteomics generates large amounts of data, even in the
     sc:url "https://github.com/MannLabs/alphatims" .
 
 <https://bio.tools/alphatracker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3304,
@@ -87701,7 +73401,7 @@ High-resolution MS-based proteomics generates large amounts of data, even in the
     sc:url "https://github.com/ZexinChen/AlphaTracker" .
 
 <https://bio.tools/alpine> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2259,
@@ -87723,7 +73423,7 @@ High-resolution MS-based proteomics generates large amounts of data, even in the
     biotools:primaryContact <http://orcid.org/0000-0001-8401-0545> .
 
 <https://bio.tools/alpsnmr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0593,
@@ -87743,14 +73443,14 @@ High-resolution MS-based proteomics generates large amounts of data, even in the
 
 <https://bio.tools/alra> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3112" ;
-            sc:name "Gene expression matrix" ;
-            sc:sameAs "http://edamontology.org/data_3112" ] ;
+            sc:additionalType "http://edamontology.org/data_3112" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Gene expression matrix" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3112" ;
-            sc:name "Gene expression matrix" ;
-            sc:sameAs "http://edamontology.org/data_3112" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3112" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Gene expression matrix" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3308 ;
@@ -87768,7 +73468,7 @@ High-resolution MS-based proteomics generates large amounts of data, even in the
     biotools:primaryContact "Yuval Kluger" .
 
 <https://bio.tools/alsace> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2258 ;
     sc:description "Alternating Least Squares (or Multivariate Curve Resolution) for analytical chemical data, in particular hyphenated data where the first direction is a retention time axis, and the second a spectral axis. Package builds on the basic als function from the ALS package and adds functionality for high-throughput analysis, including definition of time windows, clustering of profiles, retention time correction, etcetera." ;
@@ -87785,7 +73485,7 @@ High-resolution MS-based proteomics generates large amounts of data, even in the
     biotools:primaryContact "Ron Wehrens" .
 
 <https://bio.tools/alta-cyclic> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation "pubmed:18604217" ;
@@ -87798,7 +73498,7 @@ High-resolution MS-based proteomics generates large amounts of data, even in the
     biotools:primaryContact "Yaniv Erlich" .
 
 <https://bio.tools/altanalyze> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -87822,14 +73522,14 @@ High-resolution MS-based proteomics generates large amounts of data, even in the
 
 <https://bio.tools/altcdfenvs> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1274" ;
-            sc:name "Map" ;
-            sc:sameAs "http://edamontology.org/data_1274" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1274" ;
+            sc:encodingFormat "http://edamontology.org/format_2060" ;
+            sc:name "Map" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0102,
@@ -87850,7 +73550,7 @@ High-resolution MS-based proteomics generates large amounts of data, even in the
     biotools:primaryContact "Laurent Gautier" .
 
 <https://bio.tools/alter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -87868,7 +73568,7 @@ High-resolution MS-based proteomics generates large amounts of data, even in the
     biotools:primaryContact "ALTER Support" .
 
 <https://bio.tools/altered_pathway_analyzer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0204,
@@ -87887,7 +73587,7 @@ High-resolution MS-based proteomics generates large amounts of data, even in the
         "Dinesh Gupta" .
 
 <https://bio.tools/alternative_splicing_gallery> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0203,
@@ -87910,7 +73610,7 @@ High-resolution MS-based proteomics generates large amounts of data, even in the
         "Steffen Heber" .
 
 <https://bio.tools/althapalignr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0749,
@@ -87929,7 +73629,7 @@ High-resolution MS-based proteomics generates large amounts of data, even in the
         "Peter Humburg" .
 
 <https://bio.tools/altmod> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_2275,
         edam:topic_2814,
@@ -87948,7 +73648,7 @@ altMOD is a MODELLER (https://salilab.org/modeller/) [1] plugin for improved 3D
     sc:url "https://github.com/pymodproject/altmod" .
 
 <https://bio.tools/altools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_2885,
@@ -87965,8 +73665,27 @@ altMOD is a MODELLER (https://salilab.org/modeller/) [1] plugin for improved 3D
     sc:url "https://sourceforge.net/projects/altools/" ;
     biotools:primaryContact <http://orcid.org/0000-0002-8874-9993> .
 
+<https://bio.tools/altwoa> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workflow" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_2640,
+        edam:topic_3360,
+        edam:topic_3500,
+        edam:topic_3518 ;
+    sc:citation <https://doi.org/10.1016/J.COMPBIOMED.2022.105349>,
+        "pubmed:35303580" ;
+    sc:description "AltWOA is a novel feature selection algorithm where Altruistic property of candidate whales are embedded to the Whale Optimization Algorithm (WOA)." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_3936 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "AltWOA" ;
+    sc:operatingSystem "Windows" ;
+    sc:url "https://github.com/Rohit-Kundu/AltWOA" .
+
 <https://bio.tools/alview> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0622,
@@ -87984,7 +73703,7 @@ altMOD is a MODELLER (https://salilab.org/modeller/) [1] plugin for improved 3D
     biotools:primaryContact "Richard P. Finney" .
 
 <https://bio.tools/alvin> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Web application" ;
     sc:applicationSubCategory edam:topic_2259,
@@ -88001,7 +73720,7 @@ In interdisciplinary fields such as systems biology, close collaboration between
     sc:url "https://ge.gitlab-pages.informatik.uni-wuerzburg.de/Dev/alveolus/" .
 
 <https://bio.tools/alvis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0622,
@@ -88021,7 +73740,7 @@ In interdisciplinary fields such as systems biology, close collaboration between
     biotools:primaryContact <https://orcid.org/0000-0003-3044-4297> .
 
 <https://bio.tools/alz> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
         edam:topic_0634,
@@ -88037,8 +73756,48 @@ In interdisciplinary fields such as systems biology, close collaboration between
     sc:name "Selective Neuronal Vulnerability Alzheimer Disease" ;
     sc:url "http://alz.princeton.edu" .
 
+<https://bio.tools/alz-disc> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0199,
+        edam:topic_0634,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.2174/1386207325666220520102316>,
+        "pubmed:35619290" ;
+    sc:description "A tool to discriminate disease-causing and neutral mutations in Alzheimer's disease." ;
+    sc:featureList edam:operation_4009 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "Alz-disc" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://web.iitm.ac.in/bioinfo2/alzdisc/" .
+
+<https://bio.tools/alzcode> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application",
+        "Workflow" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0602,
+        edam:topic_0625,
+        edam:topic_0634,
+        edam:topic_3170 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC033>,
+        "pubmed:35040932" ;
+    sc:description "AlzCode is a web resource that developed pipeline to evaluate the association of genes with AD. The association of genes with AD are validated by multiple lines of functional genomic evidence with statistical approaches." ;
+    sc:featureList edam:operation_1781,
+        edam:operation_3223,
+        edam:operation_3463 ;
+    sc:isAccessibleForFree true ;
+    sc:name "AlzCode" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://www.alzcode.xyz" .
+
 <https://bio.tools/alzgps> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0202,
@@ -88053,8 +73812,27 @@ In interdisciplinary fields such as systems biology, close collaboration between
     sc:name "AlzGPS" ;
     sc:url "https://alzgps.lerner.ccf.org" .
 
+<https://bio.tools/am-unet> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workbench" ;
+    sc:applicationSubCategory edam:topic_3304,
+        edam:topic_3384,
+        edam:topic_3444 ;
+    sc:citation <https://doi.org/10.1007/S11042-021-11568-7>,
+        "pmcid:PMC8742670",
+        "pubmed:35035265" ;
+    sc:description "AM-UNet: Automated Mini 3D End-to-End U-NetBased Network For Brain Claustrum Segmentation." ;
+    sc:featureList edam:operation_3927 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "AM-UNet" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/AhmedAlbishri/AM-UNET" .
+
 <https://bio.tools/amadis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0219,
@@ -88075,7 +73853,7 @@ In interdisciplinary fields such as systems biology, close collaboration between
     sc:url "http://gift2disease.net/GIFTED/" .
 
 <https://bio.tools/amanida> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3172,
@@ -88094,7 +73872,7 @@ In interdisciplinary fields such as systems biology, close collaboration between
     sc:url "https://github.com/mariallr/amanida" .
 
 <https://bio.tools/amas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Plug-in" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -88116,7 +73894,7 @@ In interdisciplinary fields such as systems biology, close collaboration between
     biotools:primaryContact "Marek L. Borowiec" .
 
 <https://bio.tools/amass> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3382,
         edam:topic_3520 ;
@@ -88132,7 +73910,7 @@ In interdisciplinary fields such as systems biology, close collaboration between
     sc:url "http://bix.ucsd.edu/AMASS/" .
 
 <https://bio.tools/amass-amr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_3301,
         edam:topic_3305,
@@ -88145,8 +73923,30 @@ In interdisciplinary fields such as systems biology, close collaboration between
     sc:name "AMASS" ;
     sc:url "http://www.amass.website" .
 
+<https://bio.tools/amat> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script",
+        "Workbench" ;
+    sc:applicationSubCategory edam:topic_3063,
+        edam:topic_3315,
+        edam:topic_3697 ;
+    sc:citation <https://doi.org/10.1093/NARGAB/LQAB120>,
+        "pmcid:PMC8759573",
+        "pubmed:35047812" ;
+    sc:description "Adaptive and powerful microbiome multivariate association analysis via feature selection." ;
+    sc:featureList edam:operation_0324,
+        edam:operation_3435,
+        edam:operation_3936 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "AMAT" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/kzb193/AMAT" .
+
 <https://bio.tools/amatreader> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_3315 ;
     sc:citation <https://doi.org/10.12688/f1000research.15146.1> ;
@@ -88160,7 +73960,7 @@ In interdisciplinary fields such as systems biology, close collaboration between
     sc:url "http://www.cgl.ucsf.edu/cytoscape/utilities3/amatreader.shtml" .
 
 <https://bio.tools/amazonforest> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0625,
@@ -88175,7 +73975,7 @@ In interdisciplinary fields such as systems biology, close collaboration between
     sc:url "https://www2.lghm.ufpa.br/amazonforest" .
 
 <https://bio.tools/ambar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0199,
@@ -88191,11 +73991,14 @@ In interdisciplinary fields such as systems biology, close collaboration between
     sc:url "http://sysbio.uni-ulm.de/?Software:Ambar" .
 
 <https://bio.tools/amber> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_2275,
         edam:topic_3307 ;
-    sc:citation "pubmed:16200636" ;
+    sc:citation <https://doi.org/10.1002/jcc.20290>,
+        <https://doi.org/10.1002/wcms.1121>,
+        "pmcid:PMC1989667",
+        "pubmed:16200636" ;
     sc:description "The Assisted Model Building with Energy Refinement tool refers to two things: a set of molecular mechanical force fields for the simulation of biomolecules (which are in the public domain, and are used in a variety of simulation programs); and a package of molecular simulation programs which includes source code and demos." ;
     sc:featureList edam:operation_2426 ;
     sc:name "AMBER" ;
@@ -88206,7 +74009,7 @@ In interdisciplinary fields such as systems biology, close collaboration between
     sc:url "http://ambermd.org/" .
 
 <https://bio.tools/ambergpumdsimulation> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0176 ;
     sc:citation <https://doi.org/10.1016/j.bpj.2017.04.055>,
@@ -88224,7 +74027,7 @@ In interdisciplinary fields such as systems biology, close collaboration between
     biotools:primaryContact "Rommie E. Amaro" .
 
 <https://bio.tools/ambertools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0176,
         edam:topic_2275 ;
@@ -88239,7 +74042,7 @@ In interdisciplinary fields such as systems biology, close collaboration between
     sc:url "http://ambermd.org/#AmberTools" .
 
 <https://bio.tools/ambient> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2259,
@@ -88256,7 +74059,7 @@ In interdisciplinary fields such as systems biology, close collaboration between
     biotools:primaryContact "William Bryant" .
 
 <https://bio.tools/ambit-sln> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0769,
@@ -88274,7 +74077,7 @@ In interdisciplinary fields such as systems biology, close collaboration between
     sc:url "http://ambit.sourceforge.net/" .
 
 <https://bio.tools/ambit-smirks> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0821,
         edam:topic_2258,
@@ -88292,8 +74095,51 @@ In interdisciplinary fields such as systems biology, close collaboration between
     sc:url "http://ambit.sourceforge.net/smirks/" ;
     biotools:primaryContact "Support" .
 
+<https://bio.tools/ambp> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application",
+        "Workflow" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_0625,
+        edam:topic_0769,
+        edam:topic_3168,
+        edam:topic_3518 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAC424>,
+        "pmcid:PMC9252723",
+        "pubmed:35639514" ;
+    sc:description "Aquaculture Molecular Breeding Platform (AMBP): a web server and standalone version for genotype imputation and genetic analysis in aquaculture" ;
+    sc:featureList edam:operation_0487,
+        edam:operation_3196,
+        edam:operation_3557,
+        edam:operation_3891 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Other" ;
+    sc:name "AMBP" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://mgb.qnlm.ac" .
+
+<https://bio.tools/amc> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0199,
+        edam:topic_0625,
+        edam:topic_3293 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAB857>,
+        "pubmed:34951625" ;
+    sc:description "Accurate mutation clustering from single-cell sequencing data." ;
+    sc:featureList edam:operation_3196,
+        edam:operation_3432,
+        edam:operation_3478 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "AMC" ;
+    sc:operatingSystem "Linux" ;
+    sc:url "https://github.com/qasimyu/amc" .
+
 <https://bio.tools/amdock> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0209,
         edam:topic_2275,
@@ -88310,7 +74156,7 @@ In interdisciplinary fields such as systems biology, close collaboration between
     sc:url "https://github.com/Valdes-Tresanco-MS" .
 
 <https://bio.tools/amen> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3391 ;
     sc:citation <https://doi.org/10.1186/1471-2105-9-86>,
@@ -88326,8 +74172,31 @@ In interdisciplinary fields such as systems biology, close collaboration between
     sc:url "https://sourceforge.net/projects/amen/" ;
     biotools:primaryContact <http://orcid.org/0000-0002-0535-3628> .
 
+<https://bio.tools/ametarisk> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0199,
+        edam:topic_2640,
+        edam:topic_3360,
+        edam:topic_3474,
+        edam:topic_3676 ;
+    sc:citation <https://doi.org/10.3389/FONC.2022.898117>,
+        "pmcid:PMC9252167",
+        "pubmed:35795065" ;
+    sc:description "AmetaRisk is an online tool for quantitative assessment of CRC metastasis risk based on the local invasion." ;
+    sc:featureList edam:operation_3227,
+        edam:operation_3659,
+        edam:operation_3799 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Other" ;
+    sc:name "AmetaRisk" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://www.bio-add.org/AmetaRisk" .
+
 <https://bio.tools/amf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0780 ;
@@ -88344,7 +74213,7 @@ In interdisciplinary fields such as systems biology, close collaboration between
     biotools:primaryContact "Zheng Yuan" .
 
 <https://bio.tools/amfinder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application",
         "Suite" ;
@@ -88367,7 +74236,7 @@ In interdisciplinary fields such as systems biology, close collaboration between
         <https://orcid.org/0000-0002-7836-5881> .
 
 <https://bio.tools/amica> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0203,
@@ -88388,8 +74257,28 @@ In interdisciplinary fields such as systems biology, close collaboration between
     sc:url "http://bioalgo.iit.cnr.it/amica" ;
     biotools:primaryContact "AMICa Team" .
 
+<https://bio.tools/amica-proteomics> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0080,
+        edam:topic_0121,
+        edam:topic_0128,
+        edam:topic_3070,
+        edam:topic_3520 ;
+    sc:citation <https://doi.org/10.1101/2021.11.23.466958> ;
+    sc:description "Amica is an interactive and user-friendly web-based platform that accepts proteomic input files from different sources and provides automatically generated quality control, set comparisons, differential expression, biological network and over-representation analysis on the basis of minimal user input." ;
+    sc:featureList edam:operation_2939,
+        edam:operation_3501,
+        edam:operation_3557,
+        edam:operation_3891 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "amica" ;
+    sc:url "https://bioapps.maxperutzlabs.ac.at/app/amica" ;
+    biotools:primaryContact "Sebastian Didusch" .
+
 <https://bio.tools/amigene> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0623,
         edam:topic_3339,
@@ -88410,7 +74299,7 @@ In interdisciplinary fields such as systems biology, close collaboration between
     biotools:primaryContact "Claudine Medigue" .
 
 <https://bio.tools/amigo2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2259,
@@ -88429,7 +74318,7 @@ In interdisciplinary fields such as systems biology, close collaboration between
     biotools:primaryContact "Eva Balsa-Canto & Julio R. Banga" .
 
 <https://bio.tools/amigo_2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0089 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btn615> ;
@@ -88445,8 +74334,30 @@ In interdisciplinary fields such as systems biology, close collaboration between
     sc:softwareHelp <http://wiki.geneontology.org/index.php/AmiGO_2_Manual:_Home> ;
     sc:url "http://amigo.geneontology.org/amigo" .
 
+<https://bio.tools/amigos_iii> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Plug-in" ;
+    sc:applicationSubCategory edam:topic_0097,
+        edam:topic_0099,
+        edam:topic_0621,
+        edam:topic_0654 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC207>,
+        "pubmed:35385068" ;
+    sc:description "AMIGOS III is a plugin to PyMOL for pseudo-torsion angle visualization and motif-based structure comparison of nucleic acids." ;
+    sc:featureList edam:operation_0249,
+        edam:operation_0570,
+        edam:operation_1812,
+        edam:operation_2518 ;
+    sc:isAccessibleForFree true ;
+    sc:license "BSD-2-Clause" ;
+    sc:name "AMIGOS III" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/pylelab/AMIGOSIII.<h4" .
+
 <https://bio.tools/amino-acid-conservation> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3070,
@@ -88463,7 +74374,7 @@ In interdisciplinary fields such as systems biology, close collaboration between
     biotools:primaryContact "Guangdi Li" .
 
 <https://bio.tools/amlrs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3295,
@@ -88480,7 +74391,7 @@ In interdisciplinary fields such as systems biology, close collaboration between
     sc:url "https://tcgi.shinyapps.io/amlrs_nomogram/" .
 
 <https://bio.tools/amlvaran> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_2640,
@@ -88497,8 +74408,21 @@ In interdisciplinary fields such as systems biology, close collaboration between
     sc:name "AMLVaran" ;
     sc:url "https://amlvaran.uni-muenster.de" .
 
+<https://bio.tools/amm> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Workbench" ;
+    sc:citation <https://doi.org/10.1109/TVCG.2022.3165392>,
+        "pubmed:35394910" ;
+    sc:description "Adaptive Multilinear Meshes (AMMs) is a new framework to represent piecewise multilinear volumetric data using mixed-precision adaptive meshes." ;
+    sc:featureList edam:operation_0337 ;
+    sc:isAccessibleForFree true ;
+    sc:license "BSD-3-Clause" ;
+    sc:name "AMM" ;
+    sc:url "https://github.com/llnl/amm" .
+
 <https://bio.tools/ammodels> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3071 ;
@@ -88515,22 +74439,22 @@ In interdisciplinary fields such as systems biology, close collaboration between
 
 <https://bio.tools/ammos2> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1463" ;
-            sc:name "Small molecule structure" ;
-            sc:sameAs "http://edamontology.org/data_1463" ],
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein structure" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ] ;
+            sc:additionalType "http://edamontology.org/data_1463" ;
+            sc:encodingFormat "http://edamontology.org/format_3816" ;
+            sc:name "Small molecule structure" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ],
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein structure" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1463" ;
-            sc:name "Small molecule structure" ;
-            sc:sameAs "http://edamontology.org/data_1463" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1463" ;
+            sc:encodingFormat "http://edamontology.org/format_3816" ;
+            sc:name "Small molecule structure" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0154 ;
@@ -88547,7 +74471,7 @@ In interdisciplinary fields such as systems biology, close collaboration between
     biotools:primaryContact "Maria A. Miteva" .
 
 <https://bio.tools/amoebadb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3293,
@@ -88567,7 +74491,7 @@ In interdisciplinary fields such as systems biology, close collaboration between
     biotools:primaryContact "Contact form" .
 
 <https://bio.tools/amordad> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3174 ;
@@ -88584,7 +74508,7 @@ In interdisciplinary fields such as systems biology, close collaboration between
     biotools:primaryContact "Andrew Smith" .
 
 <https://bio.tools/amos> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0622 ;
@@ -88601,7 +74525,7 @@ In interdisciplinary fields such as systems biology, close collaboration between
     biotools:primaryContact "AMOS team" .
 
 <https://bio.tools/amountain> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -88620,7 +74544,7 @@ In interdisciplinary fields such as systems biology, close collaboration between
     biotools:primaryContact "Dong Li" .
 
 <https://bio.tools/amp0> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -88637,14 +74561,14 @@ In interdisciplinary fields such as systems biology, close collaboration between
 
 <https://bio.tools/amped> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2531" ;
-            sc:name "Experiment report" ;
-            sc:sameAs "http://edamontology.org/data_2531" ] ;
+            sc:additionalType "http://edamontology.org/data_2531" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Experiment report" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0850" ;
-            sc:name "Sequence set" ;
-            sc:sameAs "http://edamontology.org/data_0850" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0850" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Sequence set" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Suite",
         "Web service" ;
@@ -88663,7 +74587,7 @@ In interdisciplinary fields such as systems biology, close collaboration between
     biotools:primaryContact "Lenore M Martin" .
 
 <https://bio.tools/ampeppy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0121,
@@ -88679,7 +74603,7 @@ In interdisciplinary fields such as systems biology, close collaboration between
     sc:url "https://github.com/tlawrence3/amPEPpy" .
 
 <https://bio.tools/amphora> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3174 ;
     sc:citation <https://doi.org/10.1186/gb-2008-9-10-r151> ;
@@ -88693,7 +74617,7 @@ In interdisciplinary fields such as systems biology, close collaboration between
     sc:url "https://phylogenomics.me/software/amphora/" .
 
 <https://bio.tools/amphoranet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3168,
         edam:topic_3174,
@@ -88711,7 +74635,7 @@ In interdisciplinary fields such as systems biology, close collaboration between
     biotools:primaryContact "PIT Bioinformatics Group" .
 
 <https://bio.tools/amphoravizu> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0194,
@@ -88729,7 +74653,7 @@ In interdisciplinary fields such as systems biology, close collaboration between
     biotools:primaryContact "PIT Bioinformatics Group" .
 
 <https://bio.tools/ampir> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -88741,7 +74665,7 @@ In interdisciplinary fields such as systems biology, close collaboration between
     sc:url "https://github.com/legana/ampir" .
 
 <https://bio.tools/ampl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0769,
@@ -88762,7 +74686,7 @@ The ATOM Modeling PipeLine (AMPL) extends the functionality of DeepChem and supp
     sc:url "https://github.com/ATOMconsortium/AMPL" .
 
 <https://bio.tools/ample> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_2828 ;
@@ -88777,7 +74701,7 @@ The ATOM Modeling PipeLine (AMPL) extends the functionality of DeepChem and supp
     biotools:primaryContact "D. J. Rigden" .
 
 <https://bio.tools/amplican> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3519 ;
@@ -88795,15 +74719,8 @@ The ATOM Modeling PipeLine (AMPL) extends the functionality of DeepChem and supp
     sc:url "http://bioconductor.org/packages/release/bioc/html/amplican.html" ;
     biotools:primaryContact "Eivind Valen" .
 
-<https://bio.tools/amplicon_sequencing_service> a sc:SoftwareApplication ;
-    sc:description """Amplicon sequencing is based on NGS technology or PacBio SMRT sequencing. The ultra-deep sequencing of amplicons (PCR products) allows efficient variant identification and characterization. This technique has a wide range of applications, including 16S/18S/ITS gene sequencing, SNP genotyping, CRISPR sequencing, somatic/complex variant discovery, antibody screening sequencing, immune repertoire sequencing, et al.
-
-Whether you would like to detect the diversity of microbial communities or discover rare somatic mutations in complex samples. CD Genomics could provide professional, cost-efficient and high-speed amplicon sequencing services to meet your project requirements.""" ;
-    sc:name "Amplicon Sequencing Service" ;
-    sc:url "https://www.cd-genomics.com/amplicon-sequencing-services.html" .
-
 <https://bio.tools/amplicondesign> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0632,
         edam:topic_0654,
@@ -88823,25 +74740,35 @@ Whether you would like to detect the diversity of microbial communities or disco
     sc:url "https://amplicondesign.dkfz.de/" .
 
 <https://bio.tools/ampliconnoise> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "a collection of programs for the removal of noise from 454 sequenced PCR amplicons. It involves two steps the removal of noise from the sequencing itself and the removal of PCR point errors. This project also includes the Perseus algorithm for chimera removal." ;
     sc:featureList edam:operation_0450 ;
     sc:name "AmpliconNoise" ;
     sc:url "https://code.google.com/archive/p/ampliconnoise/" .
 
-<https://bio.tools/ampliconqc> a sc:SoftwareApplication ;
-    bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2012" ;
-            sc:name "Sequence coordinates" ;
-            sc:sameAs "http://edamontology.org/data_2012" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
-    sc:description "AnnotSV is a standalone program designed for annotating and ranking Structural Variations (SV). This tool is implemented in Tcl, with a ready to start installation, and runs in command line on all platforms." ;
-    sc:featureList edam:operation_0226 ;
-    sc:name "AmpliconQC" ;
-    sc:url "https://lbgi.fr/AnnotSV/" .
+<https://bio.tools/amplify> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workflow" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_3168,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1186/S12864-022-08310-4>,
+        "pmcid:PMC8788131",
+        "pubmed:35078402" ;
+    sc:description "AMPlify is an attentive deep learning model for antimicrobial peptide prediction." ;
+    sc:featureList edam:operation_3192,
+        edam:operation_3461,
+        edam:operation_3482 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "AMPlify" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/bcgsc/AMPlify" .
 
 <https://bio.tools/amplikyzer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654,
         edam:topic_3168,
@@ -88859,7 +74786,7 @@ The Roche 454 GS Junior sequencing platform allows locus-specific DNA methylatio
     sc:url "https://bitbucket.org/svenrahmann/amplikyzer" .
 
 <https://bio.tools/amplimap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0632,
@@ -88880,7 +74807,7 @@ The Roche 454 GS Junior sequencing platform allows locus-specific DNA methylatio
     biotools:primaryContact "Nils Koelling" .
 
 <https://bio.tools/amplimethprofiler> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3656,
@@ -88900,7 +74827,7 @@ The Roche 454 GS Junior sequencing platform allows locus-specific DNA methylatio
     biotools:primaryContact "Giovanni Scala" .
 
 <https://bio.tools/ampliqueso> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0077,
@@ -88921,7 +74848,7 @@ The Roche 454 GS Junior sequencing platform allows locus-specific DNA methylatio
     biotools:primaryContact "Michal Okoniewski" .
 
 <https://bio.tools/ampred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154 ;
     sc:citation <https://doi.org/10.1038/415389a> ;
@@ -88935,7 +74862,7 @@ The Roche 454 GS Junior sequencing platform allows locus-specific DNA methylatio
     sc:url "http://www.bioinformatics.org/Antimicrobial/" .
 
 <https://bio.tools/amps> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3307 ;
@@ -88951,10 +74878,10 @@ The Roche 454 GS Junior sequencing platform allows locus-specific DNA methylatio
 
 <https://bio.tools/amps-nmr> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0883" ;
-            sc:name "Structure" ;
-            sc:sameAs "http://edamontology.org/data_0883" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0883" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Structure" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_1317 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btr415> ;
@@ -88972,7 +74899,7 @@ The Roche 454 GS Junior sequencing platform allows locus-specific DNA methylatio
     biotools:primaryContact "Antonio Rosato" .
 
 <https://bio.tools/amptools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0637,
         edam:topic_3050,
@@ -88991,14 +74918,13 @@ The Roche 454 GS Junior sequencing platform allows locus-specific DNA methylatio
 
 <https://bio.tools/ampvis> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3707" ;
-            sc:name "Biodiversity data" ;
-            sc:sameAs "http://edamontology.org/data_3707" ] ;
+            sc:additionalType "http://edamontology.org/data_3707" ;
+            sc:encodingFormat "http://edamontology.org/format_3746" ;
+            sc:name "Biodiversity data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:name "Image" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3050 ;
     sc:citation <https://doi.org/10.1101/299537> ;
@@ -89011,13 +74937,13 @@ The Roche 454 GS Junior sequencing platform allows locus-specific DNA methylatio
     sc:url "https://github.com/MadsAlbertsen/ampvis2" .
 
 <https://bio.tools/amr-meta> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "a k-mer and metafeature approach to classify antimicrobial resistance from high-throughput short-read metagenomics data" ;
     sc:name "AMR-meta" ;
     sc:url "https://github.com/smarini/AMR-meta" .
 
 <https://bio.tools/amrmap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3301,
         edam:topic_3324 ;
@@ -89032,7 +74958,7 @@ The Roche 454 GS Junior sequencing platform allows locus-specific DNA methylatio
     sc:url "https://amrmap.net/" .
 
 <https://bio.tools/ams> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0160,
@@ -89051,7 +74977,7 @@ The Roche 454 GS Junior sequencing platform allows locus-specific DNA methylatio
     sc:url "https://code.google.com/p/automotifserver/" .
 
 <https://bio.tools/amt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_3500 ;
@@ -89072,7 +74998,7 @@ The Roche 454 GS Junior sequencing platform allows locus-specific DNA methylatio
     biotools:primaryContact "Johannes Signer" .
 
 <https://bio.tools/amta-net> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3384,
         edam:topic_3409,
         edam:topic_3452 ;
@@ -89090,7 +75016,7 @@ The Roche 454 GS Junior sequencing platform allows locus-specific DNA methylatio
     sc:url "https://github.com/superxuang/amta-net" .
 
 <https://bio.tools/amtrak> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3385,
@@ -89109,7 +75035,7 @@ The Roche 454 GS Junior sequencing platform allows locus-specific DNA methylatio
     biotools:primaryContact <http://orcid.org/0000-0002-9506-2153> .
 
 <https://bio.tools/amulet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_2229,
@@ -89128,7 +75054,7 @@ Running AMULET consists of two parts: 1) Identifying all loci with >2 uniquely a
     sc:url "https://ucarlab.github.io/AMULET/" .
 
 <https://bio.tools/amvoc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3304,
@@ -89149,7 +75075,7 @@ Running AMULET consists of two parts: 1) Identifying all loci with >2 uniquely a
     sc:url "https://github.com/tyiannak/amvoc/tree/master" .
 
 <https://bio.tools/amylpred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0121 ;
@@ -89165,7 +75091,7 @@ Running AMULET consists of two parts: 1) Identifying all loci with >2 uniquely a
     sc:url "http://aias.biol.uoa.gr/AMYLPRED/" .
 
 <https://bio.tools/amylpred2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3070 ;
     sc:citation <https://doi.org/10.1371/journal.pone.0054175>,
@@ -89183,18 +75109,18 @@ Running AMULET consists of two parts: 1) Identifying all loci with >2 uniquely a
 
 <https://bio.tools/amypdb> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ],
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_2200" ;
+            sc:name "Protein sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1093" ;
-            sc:name "Sequence accession" ;
-            sc:sameAs "http://edamontology.org/data_1093" ] ;
+            sc:additionalType "http://edamontology.org/data_1093" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Sequence accession" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1233" ;
-            sc:name "Sequence set (protein)" ;
-            sc:sameAs "http://edamontology.org/data_1233" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1233" ;
+            sc:encodingFormat "http://edamontology.org/format_1332" ;
+            sc:name "Sequence set (protein)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0123 ;
     sc:citation <https://doi.org/10.1186/1471-2105-9-273> ;
@@ -89209,8 +75135,29 @@ Running AMULET consists of two parts: 1) Identifying all loci with >2 uniquely a
     sc:softwareHelp <http://amypdb.genouest.org/e107_plugins/amypdb_project/help.php> ;
     sc:url "http://amypdb.genouest.org" .
 
+<https://bio.tools/amypred-frl> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0078,
+        edam:topic_0634,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1038/S41598-022-11897-Z>,
+        "pmcid:PMC9095707",
+        "pubmed:35546347" ;
+    sc:description "AMYPred-FRL is a novel approach for accurate prediction of amyloid proteins by using feature representation learning." ;
+    sc:featureList edam:operation_3092,
+        edam:operation_3436,
+        edam:operation_3767 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "AMYPred-FRL" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://pmlabstack.pythonanywhere.com/AMYPred-FRL" .
+
 <https://bio.tools/anaconda> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0654 ;
@@ -89226,7 +75173,7 @@ Running AMULET consists of two parts: 1) Identifying all loci with >2 uniquely a
     biotools:primaryContact "José Luis Oliveira" .
 
 <https://bio.tools/anaconda_cnv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3175,
@@ -89242,7 +75189,7 @@ Running AMULET consists of two parts: 1) Identifying all loci with >2 uniquely a
         "Yuanwei Zhang" .
 
 <https://bio.tools/analysis-forecast-covid19-patients-worldwide> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344 ;
@@ -89258,7 +75205,7 @@ Running AMULET consists of two parts: 1) Identifying all loci with >2 uniquely a
     biotools:primaryContact "Akhilesh  Kumar" .
 
 <https://bio.tools/analysis-the-trajectory-covid19-close-contacts> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3305,
@@ -89275,7 +75222,7 @@ Running AMULET consists of two parts: 1) Identifying all loci with >2 uniquely a
     biotools:primaryContact "hangjun ji" .
 
 <https://bio.tools/analysispageserver> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3071,
@@ -89294,7 +75241,7 @@ Running AMULET consists of two parts: 1) Identifying all loci with >2 uniquely a
     biotools:primaryContact "Brad Friedman" .
 
 <https://bio.tools/anamir> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0099,
@@ -89312,8 +75259,30 @@ Running AMULET consists of two parts: 1) Identifying all loci with >2 uniquely a
     sc:url "http://bioconductor.org/packages/release/bioc/html/anamiR.html" ;
     biotools:primaryContact "Ti-Tai Wang" .
 
+<https://bio.tools/ananastra> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0749,
+        edam:topic_2885,
+        edam:topic_3169,
+        edam:topic_3512,
+        edam:topic_3517 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAC262>,
+        "pubmed:35446421" ;
+    sc:description "A web server for the identification and annotation of regulatory single-nucleotide polymorphisms (SNPs) with allele-specific binding events." ;
+    sc:featureList edam:operation_0484,
+        edam:operation_3501,
+        edam:operation_3661 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "ANANASTRA" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://ananastra.autosome.org" .
+
 <https://bio.tools/ananke> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_0637,
@@ -89333,7 +75302,7 @@ Running AMULET consists of two parts: 1) Identifying all loci with >2 uniquely a
     biotools:primaryContact "Michael W. Hall" .
 
 <https://bio.tools/ananse> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0749,
@@ -89351,7 +75320,7 @@ Running AMULET consists of two parts: 1) Identifying all loci with >2 uniquely a
     sc:url "https://github.com/vanheeringen-lab/ANANSE" .
 
 <https://bio.tools/anaquin> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -89373,7 +75342,7 @@ Running AMULET consists of two parts: 1) Identifying all loci with >2 uniquely a
     biotools:primaryContact "Ted Wong" .
 
 <https://bio.tools/anarci> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -89390,7 +75359,7 @@ Running AMULET consists of two parts: 1) Identifying all loci with >2 uniquely a
     sc:url "http://opig.stats.ox.ac.uk/webapps/sabdab-sabpred/ANARCI.php" .
 
 <https://bio.tools/anastasia> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0821,
@@ -89417,8 +75386,33 @@ Running AMULET consists of two parts: 1) Identifying all loci with >2 uniquely a
         "Eleftherios Pilalis",
         "Olga Papadodima" .
 
+<https://bio.tools/anat> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Plug-in" ;
+    sc:applicationSubCategory edam:topic_0602,
+        edam:topic_0621,
+        edam:topic_2259,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1186/S12859-021-04449-1>,
+        "pmcid:PMC8555137",
+        "pubmed:34706638" ;
+    sc:description """ANAT (Advanced Network Analysis Tool) is an all-in-one resource that provides access to up-to-date large-scale physical association data in several organisms, advanced algorithms for network reconstruction, and a number of tools for exploring and evaluating the obtained network models. It is a framework for elucidating functional protein subnetworks using graph-theoretic and machine learning approaches.
+
+Genome-scale screening studies are gradually accumulating a wealth of data on the putative involvement of hundreds of genes in various cellular responses or functions. A fundamental challenge is to chart out the molecular pathways that underlie these systems. ANAT (Advanced Network Analysis Tool) , is an all-in-one resource that provides access to up-to-date large-scale physical association data in several organisms, advanced algorithms for network reconstruction, and a number of tools for exploring and evaluating the obtained network models. It is a plug-in for Cytoscape.""" ;
+    sc:featureList edam:operation_0276,
+        edam:operation_3925,
+        edam:operation_3928 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Other" ;
+    sc:name "ANAT" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://www.cs.tau.ac.il/~bnet/ANAT/resources/ANAT-manual.pdf> ;
+    sc:url "https://www.cs.tau.ac.il/~bnet/ANAT/" .
+
 <https://bio.tools/anatomical-data-visualization-toolfbox-fmri-ecog> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3304,
@@ -89434,8 +75428,26 @@ Running AMULET consists of two parts: 1) Identifying all loci with >2 uniquely a
     sc:url "https://www.mathworks.com/matlabcentral/fileexchange/71634-anatomical-data-visualization-toolfbox-for-fmri-ecog" ;
     biotools:primaryContact "Edden M. Gerber" .
 
+<https://bio.tools/anatomysketch> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Desktop application" ;
+    sc:applicationSubCategory edam:topic_0769,
+        edam:topic_3384,
+        edam:topic_3444,
+        edam:topic_3452,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1007/S10278-022-00660-5>,
+        "pubmed:35768752" ;
+    sc:description "A medical image segmentation software supporting user interventions and user-defined funtion extention" ;
+    sc:featureList edam:operation_3443,
+        edam:operation_3553 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "AnatomySketch" ;
+    sc:url "https://github.com/DlutMedimgGroup/AnatomySketch-Software" .
+
 <https://bio.tools/anca> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0176 ;
     sc:citation <https://doi.org/10.1016/j.bpj.2018.03.021>,
@@ -89453,7 +75465,7 @@ Running AMULET consists of two parts: 1) Identifying all loci with >2 uniquely a
     biotools:primaryContact "S. Chakra Chennubhotla" .
 
 <https://bio.tools/anca-network> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0154,
@@ -89470,7 +75482,7 @@ Running AMULET consists of two parts: 1) Identifying all loci with >2 uniquely a
     sc:url "http://sysbio.suda.edu.cn/anca/" .
 
 <https://bio.tools/anceshc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3053 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btn071> ;
@@ -89484,7 +75496,7 @@ Running AMULET consists of two parts: 1) Identifying all loci with >2 uniquely a
     sc:url "http://www.imperial.ac.uk/people/l.coin" .
 
 <https://bio.tools/ancestor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3293,
         edam:topic_3307,
@@ -89500,7 +75512,7 @@ Running AMULET consists of two parts: 1) Identifying all loci with >2 uniquely a
     biotools:primaryContact "Laboratory of Masatoshi Nei" .
 
 <https://bio.tools/ancestralclust> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3168,
         edam:topic_3293 ;
@@ -89517,7 +75529,7 @@ Running AMULET consists of two parts: 1) Identifying all loci with >2 uniquely a
     biotools:primaryContact <https://orcid.org/0000-0003-0056-8045> .
 
 <https://bio.tools/ancestree> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3168,
@@ -89533,7 +75545,7 @@ Running AMULET consists of two parts: 1) Identifying all loci with >2 uniquely a
     biotools:primaryContact "Raphael Lab" .
 
 <https://bio.tools/ancestry_hmm-s> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0160,
@@ -89549,7 +75561,7 @@ Running AMULET consists of two parts: 1) Identifying all loci with >2 uniquely a
     sc:url "https://github.com/jesvedberg/Ancestry_HMM-S/" .
 
 <https://bio.tools/ancestryinfer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0160,
         edam:topic_0610,
@@ -89563,7 +75575,7 @@ Running AMULET consists of two parts: 1) Identifying all loci with >2 uniquely a
     sc:url "https://github.com/Schumerlab/ancestryinfer" .
 
 <https://bio.tools/ancestrymap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0634,
@@ -89578,7 +75590,7 @@ Running AMULET consists of two parts: 1) Identifying all loci with >2 uniquely a
     sc:url "http://genetics.med.harvard.edu/reich/Reich_Lab/Software.html" .
 
 <https://bio.tools/ancgwas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3053,
@@ -89594,7 +75606,7 @@ Running AMULET consists of two parts: 1) Identifying all loci with >2 uniquely a
     biotools:primaryContact "Emile Chimusa" .
 
 <https://bio.tools/anchor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0196 ;
     sc:description "Post-processing tools for de novo assemblies." ;
@@ -89607,10 +75619,10 @@ Running AMULET consists of two parts: 1) Identifying all loci with >2 uniquely a
 
 <https://bio.tools/anchor_Expedition_suite> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2082" ;
-            sc:name "Matrix" ;
-            sc:sameAs "http://edamontology.org/data_2082" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2082" ;
+            sc:encodingFormat "http://edamontology.org/format_2333" ;
+            sc:name "Matrix" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3320 ;
@@ -89628,30 +75640,30 @@ Running AMULET consists of two parts: 1) Identifying all loci with >2 uniquely a
 
 <https://bio.tools/anchor_prediction> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ],
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Protein sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3021" ;
-            sc:name "UniProt accession" ;
-            sc:sameAs "http://edamontology.org/data_3021" ] ;
+            sc:additionalType "http://edamontology.org/data_3021" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "UniProt accession" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ],
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Plot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ],
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Plot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ],
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Protein features" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Protein features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web service" ;
     sc:applicationSubCategory edam:topic_3534,
@@ -89668,7 +75680,7 @@ Running AMULET consists of two parts: 1) Identifying all loci with >2 uniquely a
     sc:url "https://iupred3.elte.hu/" .
 
 <https://bio.tools/anchored_dialign> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1186/1748-7188-1-6> ;
@@ -89682,7 +75694,7 @@ Running AMULET consists of two parts: 1) Identifying all loci with >2 uniquely a
     sc:url "http://dialign.gobics.de/anchor/index.php" .
 
 <https://bio.tools/ancientmetagenomedir> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0797,
         edam:topic_3174,
@@ -89709,7 +75721,7 @@ Running AMULET consists of two parts: 1) Identifying all loci with >2 uniquely a
     biotools:primaryContact <https://orcid.org/0000-0001-5585-6277> .
 
 <https://bio.tools/ancorr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0622 ;
     sc:citation "pubmed:25627242" ;
@@ -89726,7 +75738,7 @@ Running AMULET consists of two parts: 1) Identifying all loci with >2 uniquely a
         "Youri Kravatsky" .
 
 <https://bio.tools/anddigest> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0218,
         edam:topic_0602,
@@ -89745,7 +75757,7 @@ The rapid growth of scientific literature has rendered the task of finding relev
     sc:url "https://anddigest.sysbio.ru/index.php" .
 
 <https://bio.tools/andes> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0654,
@@ -89770,14 +75782,14 @@ The rapid growth of scientific literature has rendered the task of finding relev
 
 <https://bio.tools/andi> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0870" ;
-            sc:name "Sequence distance matrix" ;
-            sc:sameAs "http://edamontology.org/data_0870" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0870" ;
+            sc:encodingFormat "http://edamontology.org/format_1423" ;
+            sc:name "Sequence distance matrix" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3293 ;
     sc:author "Fabian Klötzl" ;
@@ -89798,7 +75810,7 @@ The rapid growth of scientific literature has rendered the task of finding relev
     biotools:primaryContact "Fabian Klötzl" .
 
 <https://bio.tools/andom> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0121,
@@ -89817,7 +75829,7 @@ The rapid growth of scientific literature has rendered the task of finding relev
     biotools:primaryContact "Dominik Schaack & Steffen Schmidt" .
 
 <https://bio.tools/andrej_sali_lab> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -89841,7 +75853,7 @@ The rapid growth of scientific literature has rendered the task of finding relev
     biotools:primaryContact "Andrej Sali" .
 
 <https://bio.tools/andsystem> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0602,
@@ -89857,7 +75869,7 @@ The rapid growth of scientific literature has rendered the task of finding relev
     biotools:primaryContact "Vladimir A Ivanisenko" .
 
 <https://bio.tools/anduin> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3384,
         edam:topic_3416,
@@ -89873,7 +75885,7 @@ The rapid growth of scientific literature has rendered the task of finding relev
     biotools:primaryContact <https://orcid.org/0000-0002-6022-3682> .
 
 <https://bio.tools/anecdata> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Bioinformatics portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0610,
@@ -89893,7 +75905,7 @@ The rapid growth of scientific literature has rendered the task of finding relev
     sc:url "https://www.anecdata.org" .
 
 <https://bio.tools/anem> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0610,
@@ -89908,7 +75920,7 @@ This package models simple aquifer and well configurations.""" ;
     sc:url "http://gopalpenny.shinyapps.io/anem-app" .
 
 <https://bio.tools/aneufinder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0622,
@@ -89931,7 +75943,7 @@ This package models simple aquifer and well configurations.""" ;
         "Aaron Taudt" .
 
 <https://bio.tools/aneurysm-detection> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3382,
         edam:topic_3390,
@@ -89948,8 +75960,25 @@ This package models simple aquifer and well configurations.""" ;
     sc:url "https://www.mathworks.com/matlabcentral/fileexchange/63729-jm61288-aneurysm_detection" ;
     biotools:primaryContact "Jubin Mitra" .
 
+<https://bio.tools/anexvis> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:applicationSubCategory edam:topic_0602,
+        edam:topic_0634,
+        edam:topic_3170,
+        edam:topic_3308,
+        edam:topic_3335 ;
+    sc:citation <https://doi.org/10.1007/978-1-0716-1398-6_31>,
+        "pubmed:34626395" ;
+    sc:description "anexVis is a transcriptome tool to visualize organ/tissue-specific glycosaminoglycan biosynthetic and catabolic pathways in human health and diseases. anexVis  allows one to analyze a large number of genes that are related to biosynthetic and catabolic pathways of all glycosaminoglycans, such as heparan sulfate, chondroitin sulfate, keratan sulfate, and hyaluronic acid, in parallel across various human tissues organs. Such visual analyses have not been accessible to the broad research community despite the accumulation of a large amount of RNA-seq data." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_3463,
+        edam:operation_3926 ;
+    sc:name "anexVis" ;
+    sc:url "https://anexvis.chpc.utah.edu/" ;
+    biotools:primaryContact "Balagurunathan Kuberan" .
+
 <https://bio.tools/anf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3391 ;
     sc:citation <https://doi.org/10.18129/B9.bioc.ANF> ;
@@ -89966,7 +75995,7 @@ This package models simple aquifer and well configurations.""" ;
     biotools:primaryContact "Tianle Ma" .
 
 <https://bio.tools/anfisa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0769,
@@ -89982,7 +76011,7 @@ Anfisa is a Variant Analysis and Curation Tool. Its purpose is to bring together
     sc:url "https://github.com/ForomePlatform/AnFiSA#public-demo" .
 
 <https://bio.tools/angeldust> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_3308 ;
     sc:citation <https://doi.org/10.1371/journal.pone.0080961> ;
@@ -90001,7 +76030,7 @@ Anfisa is a Variant Analysis and Curation Tool. Its purpose is to bring together
     biotools:primaryContact "David Horner" .
 
 <https://bio.tools/angionet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3335,
         edam:topic_3382,
@@ -90019,7 +76048,7 @@ Anfisa is a Variant Analysis and Curation Tool. Its purpose is to bring together
     sc:url "https://github.com/kritiyer/AngioNet" .
 
 <https://bio.tools/angioquant> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3307,
@@ -90037,7 +76066,7 @@ Anfisa is a Variant Analysis and Curation Tool. Its purpose is to bring together
     biotools:primaryContact "Antti Niemistö" .
 
 <https://bio.tools/angle> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0080,
@@ -90052,7 +76081,7 @@ Anfisa is a Variant Analysis and Curation Tool. Its purpose is to bring together
     biotools:primaryContact "Kana Shimizu" .
 
 <https://bio.tools/anglerfish> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0166,
         edam:topic_2814 ;
@@ -90072,14 +76101,14 @@ Anfisa is a Variant Analysis and Curation Tool. Its purpose is to bring together
 
 <https://bio.tools/angsd> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3056 ;
@@ -90102,7 +76131,7 @@ Anfisa is a Variant Analysis and Curation Tool. Its purpose is to bring together
         "Thorfinn Korneliussen" .
 
 <https://bio.tools/angsd-wrapper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3056,
@@ -90120,7 +76149,7 @@ Anfisa is a Variant Analysis and Curation Tool. Its purpose is to bring together
     biotools:primaryContact "Paul Hoffman" .
 
 <https://bio.tools/angular-ripleys-k> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_2269,
@@ -90138,7 +76167,7 @@ Anfisa is a Variant Analysis and Curation Tool. Its purpose is to bring together
     biotools:primaryContact "Dylan Owen" .
 
 <https://bio.tools/aniamppred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3474,
@@ -90153,7 +76182,7 @@ Anfisa is a Variant Analysis and Curation Tool. Its purpose is to bring together
     sc:url "https://aniamppred.anvil.app/" .
 
 <https://bio.tools/animal-apadb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0659,
@@ -90170,7 +76199,7 @@ Anfisa is a Variant Analysis and Curation Tool. Its purpose is to bring together
     sc:url "http://gong_lab.hzau.edu.cn/Animal-APAdb/" .
 
 <https://bio.tools/animal-ernadb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0659,
@@ -90190,8 +76219,31 @@ Anfisa is a Variant Analysis and Curation Tool. Its purpose is to bring together
         "Windows" ;
     sc:url "http://gong_lab.hzau.edu.cn/Animal-eRNAdb/" .
 
+<https://bio.tools/animal_qtldb> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_0219,
+        edam:topic_0625,
+        edam:topic_2885,
+        edam:topic_3500 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAB1116>,
+        "pmcid:PMC8728226",
+        "pubmed:34850103" ;
+    sc:description "The Animal QTLdb and CorrDB  are unique resources for livestock animal genetics and genomics research which have been used extensively by the international livestock genome research community." ;
+    sc:featureList edam:operation_0282,
+        edam:operation_0484,
+        edam:operation_3196 ;
+    sc:isAccessibleForFree true ;
+    sc:license "CC-BY-4.0" ;
+    sc:name "Animal QTLdb" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://www.animalgenome.org/QTLdb" .
+
 <https://bio.tools/animal_tfdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0749,
@@ -90213,7 +76265,7 @@ Anfisa is a Variant Analysis and Curation Tool. Its purpose is to bring together
         "Hongmei Zhang" .
 
 <https://bio.tools/animalcules> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Web application" ;
     sc:applicationSubCategory edam:topic_3174,
@@ -90233,7 +76285,7 @@ Anfisa is a Variant Analysis and Curation Tool. Its purpose is to bring together
     sc:url "https://github.com/compbiomed/animalcules" .
 
 <https://bio.tools/animalnexus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -90253,8 +76305,33 @@ Anfisa is a Variant Analysis and Curation Tool. Its purpose is to bring together
     sc:url "http://animalnexus.ca/" ;
     biotools:primaryContact "Stefanie E. LaZerte" .
 
+<https://bio.tools/animaltraits> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0219,
+        edam:topic_0610,
+        edam:topic_3299,
+        edam:topic_3407,
+        edam:topic_3500 ;
+    sc:citation <https://doi.org/10.1038/S41597-022-01364-9>,
+        "pmcid:PMC9163144",
+        "pubmed:35654905" ;
+    sc:description "AnimalTraits is a curated database containing body mass, metabolic rate and brain size measurements across a wide range of terrestrial animal taxa." ;
+    sc:featureList edam:operation_3435,
+        edam:operation_3436,
+        edam:operation_3695,
+        edam:operation_3799 ;
+    sc:isAccessibleForFree true ;
+    sc:license "CC0-1.0" ;
+    sc:name "AnimalTraits" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://animaltraits.org" .
+
 <https://bio.tools/anipose> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Suite" ;
     sc:applicationSubCategory edam:topic_0621,
@@ -90269,7 +76346,7 @@ Anfisa is a Variant Analysis and Curation Tool. Its purpose is to bring together
     sc:url "http://anipose.org" .
 
 <https://bio.tools/aniprotdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -90286,8 +76363,26 @@ Anfisa is a Variant Analysis and Curation Tool. Its purpose is to bring together
     sc:name "AniProtDB" ;
     sc:url "https://research.nhgri.nih.gov/aniprotdb" .
 
+<https://bio.tools/anise> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0749,
+        edam:topic_3315 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC511>,
+        "pubmed:35856714" ;
+    sc:description "ANISE (grAphical coNfigurator of TiFoSi In Silico Experiments) is an application that allows you to configure the input file of TiFoSi (Tissues: Forces & Signalling) which is a computational tool to simulate the cellular dynamics of planar epithelia." ;
+    sc:featureList edam:operation_3096 ;
+    sc:license "Not licensed" ;
+    sc:name "ANISE" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <http://lsymserver.uv.es/lsym/ANISE/#/manual> ;
+    sc:url "http://lsymserver.uv.es/lsym/ANISE" .
+
 <https://bio.tools/anisotropic-diffusion-ultrasound> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3315,
@@ -90309,7 +76404,7 @@ Anfisa is a Variant Analysis and Curation Tool. Its purpose is to bring together
     biotools:primaryContact "Gabriel Ramos Llordén" .
 
 <https://bio.tools/anm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_2275 ;
@@ -90326,7 +76421,7 @@ Anfisa is a Variant Analysis and Curation Tool. Its purpose is to bring together
     sc:url "http://anm.csb.pitt.edu/" .
 
 <https://bio.tools/anmda> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_0659,
@@ -90345,7 +76440,7 @@ Anfisa is a Variant Analysis and Curation Tool. Its purpose is to bring together
     sc:url "https://github.com/BioInfoLeo/ANMDA" .
 
 <https://bio.tools/anmj-morph> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in",
         "Script" ;
     sc:applicationSubCategory edam:topic_0634,
@@ -90366,14 +76461,14 @@ Large-scale data analysis of synaptic morphology is becoming increasingly import
 
 <https://bio.tools/annaffy> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2717" ;
-            sc:name "Oligonucleotide probe annotation" ;
-            sc:sameAs "http://edamontology.org/data_2717" ] ;
+            sc:additionalType "http://edamontology.org/data_2717" ;
+            sc:encodingFormat "http://edamontology.org/format_2031" ;
+            sc:name "Oligonucleotide probe annotation" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2084" ;
-            sc:name "Nucleic acid report" ;
-            sc:sameAs "http://edamontology.org/data_2084" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2084" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Nucleic acid report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203 ;
@@ -90391,7 +76486,7 @@ Large-scale data analysis of synaptic morphology is becoming increasingly import
     biotools:primaryContact "Colin A. Smith" .
 
 <https://bio.tools/annapurna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0154,
@@ -90408,7 +76503,7 @@ Large-scale data analysis of synaptic morphology is becoming increasingly import
     sc:url "https://github.com/filipspl/AnnapuRNA" .
 
 <https://bio.tools/anne-o-tate> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0218,
         edam:topic_3473 ;
@@ -90423,7 +76518,7 @@ Large-scale data analysis of synaptic morphology is becoming increasingly import
     sc:url "http://arrowsmith.psych.uic.edu/cgi-bin/arrowsmith_uic/AnneOTate.cgi" .
 
 <https://bio.tools/annie> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_1775 ;
@@ -90443,14 +76538,14 @@ Large-scale data analysis of synaptic morphology is becoming increasingly import
 
 <https://bio.tools/annmap> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1276" ;
-            sc:name "Nucleic acid features" ;
-            sc:sameAs "http://edamontology.org/data_1276" ] ;
+            sc:additionalType "http://edamontology.org/data_1276" ;
+            sc:encodingFormat "http://edamontology.org/format_2031" ;
+            sc:name "Nucleic acid features" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2080" ;
-            sc:name "Database search results" ;
-            sc:sameAs "http://edamontology.org/data_2080" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2080" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Database search results" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0077,
@@ -90469,7 +76564,7 @@ Large-scale data analysis of synaptic morphology is becoming increasingly import
     biotools:primaryContact "Chris Wirth" .
 
 <https://bio.tools/anno-j> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
@@ -90488,7 +76583,7 @@ Large-scale data analysis of synaptic morphology is becoming increasingly import
     sc:url "http://dandelion.liveholonics.com/dart/annoj.php" .
 
 <https://bio.tools/annoFuse> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0114,
         edam:topic_0203,
@@ -90506,7 +76601,7 @@ Using annoFuse, users can filter out fusions known to be artifactual and retaine
     sc:url "https://github.com/d3b-center/annoFuse" .
 
 <https://bio.tools/annocript> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3308,
         edam:topic_3512 ;
@@ -90522,7 +76617,7 @@ Using annoFuse, users can filter out fusions known to be artifactual and retaine
     biotools:primaryContact "Frank Musacchia" .
 
 <https://bio.tools/annogen> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0622,
@@ -90539,7 +76634,7 @@ Using annoFuse, users can filter out fusions known to be artifactual and retaine
     sc:url "https://github.com/shengqh/annogen" .
 
 <https://bio.tools/annokey> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_2640 ;
@@ -90552,7 +76647,7 @@ Using annoFuse, users can filter out fusions known to be artifactual and retaine
     sc:url "http://bjpop.github.io/annokey/" .
 
 <https://bio.tools/annolnc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0099,
@@ -90572,7 +76667,7 @@ Using annoFuse, users can filter out fusions known to be artifactual and retaine
     biotools:primaryContact "Support" .
 
 <https://bio.tools/annolnc2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -90592,7 +76687,7 @@ Using annoFuse, users can filter out fusions known to be artifactual and retaine
     sc:url "http://annolnc.gao-lab.org/" .
 
 <https://bio.tools/annominer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0749,
@@ -90610,7 +76705,7 @@ Using annoFuse, users can filter out fusions known to be artifactual and retaine
     sc:url "http://chimborazo.ibdm.univ-mrs.fr/AnnoMiner/" .
 
 <https://bio.tools/annonex2embl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0199,
@@ -90627,16 +76722,60 @@ Using annoFuse, users can filter out fusions known to be artifactual and retaine
     sc:name "annonex2embl" ;
     sc:url "https://github.com/michaelgruenstaeudl/annonex2embl" .
 
+<https://bio.tools/annoq> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0091,
+        edam:topic_0102,
+        edam:topic_0602,
+        edam:topic_0621,
+        edam:topic_3053 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAC418>,
+        "pmcid:PMC9252745",
+        "pubmed:35640593" ;
+    sc:description "The Annotation Query (AnnoQ) is an integrated functional annotation platform for large-scale genetic variant annotation." ;
+    sc:featureList edam:operation_0224,
+        edam:operation_0361,
+        edam:operation_1812 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Other" ;
+    sc:name "AnnoQ" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://annoq.org/" .
+
+<https://bio.tools/annosine> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0160,
+        edam:topic_0622,
+        edam:topic_0659,
+        edam:topic_0769,
+        edam:topic_0780 ;
+    sc:citation <https://doi.org/10.1093/PLPHYS/KIAB524>,
+        "pmcid:PMC8825457",
+        "pubmed:34792587" ;
+    sc:description "AnnoSINE is a SINE annotation tool for plant genomes. The program is designed to generate high-quality non-redundant SINE libraries for genome annotation. It uses the manually curated SINE library in the Oryza sativa genome to benchmark the annotation performance." ;
+    sc:featureList edam:operation_0224,
+        edam:operation_0362,
+        edam:operation_0525 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "AnnoSINE" ;
+    sc:url "https://github.com/yangli557/AnnoSINE" ;
+    biotools:primaryContact <https://orcid.org/0000-0003-1373-8023> .
+
 <https://bio.tools/annotate> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1276" ;
-            sc:name "Nucleic acid features" ;
-            sc:sameAs "http://edamontology.org/data_1276" ] ;
+            sc:additionalType "http://edamontology.org/data_1276" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Nucleic acid features" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2080" ;
-            sc:name "Database search results" ;
-            sc:sameAs "http://edamontology.org/data_2080" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2080" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Database search results" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0080 ;
@@ -90656,34 +76795,34 @@ Using annoFuse, users can filter out fusions known to be artifactual and retaine
 
 <https://bio.tools/annotategenes> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_3003" ;
+            sc:name "Annotation track" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ],
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_3003" ;
+            sc:name "Annotation track" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Image" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3168,
@@ -90701,7 +76840,7 @@ Using annoFuse, users can filter out fusions known to be artifactual and retaine
     biotools:primaryContact "Galaxy Support Team" .
 
 <https://bio.tools/annotategenomicregions> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0219,
         edam:topic_0622 ;
@@ -90718,36 +76857,49 @@ Using annoFuse, users can filter out fusions known to be artifactual and retaine
     sc:url "http://cru.genomics.iit.it/AnnotateGenomicRegions/" ;
     biotools:primaryContact "Contact form" .
 
+<https://bio.tools/annotatemyids> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:description "This tool can get annotation for a generic set of IDs, using the Bioconductor annotation data packages. Supported organisms are human, mouse, rat, fruit fly and zebrafish. The org.db packages that are used here are primarily based on mapping using Entrez Gene identifiers. More information on the annotation packages can be found at the Bioconductor website, for example, information on the human annotation package (org.Hs.eg.db) can be found here." ;
+    sc:featureList edam:operation_0226 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "annotatemyids" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://usegalaxy.org.au/root?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fiuc%2Fannotatemyids%2Fannotatemyids%2F3.12.0%2Bgalaxy1" .
+
 <https://bio.tools/annotatepeaks> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ],
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_3003" ;
+            sc:name "Annotation track" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_3003" ;
+            sc:name "Annotation track" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Image" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3169 ;
@@ -90765,14 +76917,14 @@ Using annoFuse, users can filter out fusions known to be artifactual and retaine
 
 <https://bio.tools/annotationdbi> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1276" ;
-            sc:name "Nucleic acid features" ;
-            sc:sameAs "http://edamontology.org/data_1276" ] ;
+            sc:additionalType "http://edamontology.org/data_1276" ;
+            sc:encodingFormat "http://edamontology.org/format_3621" ;
+            sc:name "Nucleic acid features" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2080" ;
-            sc:name "Database search results" ;
-            sc:sameAs "http://edamontology.org/data_2080" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2080" ;
+            sc:encodingFormat "http://edamontology.org/format_1920" ;
+            sc:name "Database search results" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -90792,7 +76944,7 @@ Using annoFuse, users can filter out fusions known to be artifactual and retaine
     biotools:primaryContact "BioConductor Package Maintainer" .
 
 <https://bio.tools/annotationfilter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0219 ;
     sc:description "It provides class and other infrastructure to implement filters for manipulating Bioconductor annotation resources. The filters will be used by ensembldb, Organism.dplyr, and other packages." ;
@@ -90809,18 +76961,18 @@ Using annoFuse, users can filter out fusions known to be artifactual and retaine
 
 <https://bio.tools/annotationforge> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2353" ;
-            sc:name "Ontology data" ;
-            sc:sameAs "http://edamontology.org/data_2353" ],
+            sc:additionalType "http://edamontology.org/data_2353" ;
+            sc:encodingFormat "http://edamontology.org/format_2195" ;
+            sc:name "Ontology data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1276" ;
-            sc:name "Nucleic acid features" ;
-            sc:sameAs "http://edamontology.org/data_1276" ] ;
+            sc:additionalType "http://edamontology.org/data_1276" ;
+            sc:encodingFormat "http://edamontology.org/format_2195" ;
+            sc:name "Nucleic acid features" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1276" ;
-            sc:name "Nucleic acid features" ;
-            sc:sameAs "http://edamontology.org/data_1276" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1276" ;
+            sc:encodingFormat "http://edamontology.org/format_3621" ;
+            sc:name "Nucleic acid features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3366,
@@ -90841,14 +76993,14 @@ Using annoFuse, users can filter out fusions known to be artifactual and retaine
 
 <https://bio.tools/annotationfuncs> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2091" ;
-            sc:name "Accession" ;
-            sc:sameAs "http://edamontology.org/data_2091" ] ;
+            sc:additionalType "http://edamontology.org/data_2091" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Accession" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2091" ;
-            sc:name "Accession" ;
-            sc:sameAs "http://edamontology.org/data_2091" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2091" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Accession" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3366 ;
@@ -90866,7 +77018,7 @@ Using annoFuse, users can filter out fusions known to be artifactual and retaine
     biotools:primaryContact "Stefan McKinnon Edwards" .
 
 <https://bio.tools/annotationhub> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0605,
@@ -90886,7 +77038,7 @@ Using annoFuse, users can filter out fusions known to be artifactual and retaine
     biotools:primaryContact "BioConductor Package Maintainer" .
 
 <https://bio.tools/annotationhubdata> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3071,
@@ -90906,14 +77058,14 @@ Using annoFuse, users can filter out fusions known to be artifactual and retaine
 
 <https://bio.tools/annotationtools> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0928" ;
-            sc:name "Gene expression profile" ;
-            sc:sameAs "http://edamontology.org/data_0928" ] ;
+            sc:additionalType "http://edamontology.org/data_0928" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Gene expression profile" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2080" ;
-            sc:name "Database search results" ;
-            sc:sameAs "http://edamontology.org/data_2080" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2080" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Database search results" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -90936,7 +77088,7 @@ Using annoFuse, users can filter out fusions known to be artifactual and retaine
     biotools:primaryContact "Alexandre Kuhn" .
 
 <https://bio.tools/annotatorj> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3382,
         edam:topic_3474 ;
@@ -90951,7 +77103,7 @@ Using annoFuse, users can filter out fusions known to be artifactual and retaine
     sc:url "https://github.com/spreka/annotatorj" .
 
 <https://bio.tools/annotatr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0160,
@@ -90973,14 +77125,12 @@ Using annoFuse, users can filter out fusions known to be artifactual and retaine
 
 <https://bio.tools/annotqtl> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2012" ;
-            sc:name "Sequence coordinates" ;
-            sc:sameAs "http://edamontology.org/data_2012" ] ;
+            sc:additionalType "http://edamontology.org/data_2012" ;
+            sc:name "Sequence coordinates" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1276" ;
-            sc:name "Nucleic acid features" ;
-            sc:sameAs "http://edamontology.org/data_1276" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1276" ;
+            sc:name "Nucleic acid features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0085 ;
     sc:citation <https://doi.org/10.1093/nar/gkr361> ;
@@ -90998,14 +77148,20 @@ Using annoFuse, users can filter out fusions known to be artifactual and retaine
     biotools:primaryContact "GenOuest" .
 
 <https://bio.tools/annovar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
-    sc:additionalType "Command-line tool" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Web service" ;
     sc:applicationSubCategory edam:topic_0085,
         edam:topic_0199,
         edam:topic_3325 ;
-    sc:citation <https://doi.org/10.1093/nar/gkq603>,
+    sc:citation <https://doi.org/10.1038/nprot.2015.105>,
+        <https://doi.org/10.1093/nar/gkq603>,
+        <https://doi.org/10.1136/jmedgenet-2012-100918>,
         "pmcid:PMC2938201",
-        "pubmed:20601685" ;
+        "pmcid:PMC4718734",
+        "pubmed:20601685",
+        "pubmed:22717648",
+        "pubmed:26379229" ;
     sc:description "A tool for finding relevant genetic variants from high-throughput sequencing data based on functional annotation." ;
     sc:featureList edam:operation_2403,
         edam:operation_3226,
@@ -91021,26 +77177,26 @@ Using annoFuse, users can filter out fusions known to be artifactual and retaine
 
 <https://bio.tools/annovar_annotate_variation> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1975" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3168 ;
@@ -91059,26 +77215,26 @@ Using annoFuse, users can filter out fusions known to be artifactual and retaine
 
 <https://bio.tools/annovar_summarize> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0622,
@@ -91099,7 +77255,7 @@ Using annoFuse, users can filter out fusions known to be artifactual and retaine
     biotools:primaryContact "Galaxy Support Team" .
 
 <https://bio.tools/anocva> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3300,
@@ -91121,7 +77277,7 @@ Using annoFuse, users can filter out fusions known to be artifactual and retaine
     biotools:primaryContact "Maciel C. Vidal" .
 
 <https://bio.tools/anolea> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2275,
         edam:topic_2814 ;
@@ -91139,7 +77295,7 @@ Using annoFuse, users can filter out fusions known to be artifactual and retaine
     biotools:primaryContact "Francisco Melo Ledermann" .
 
 <https://bio.tools/anonimme> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3053,
         edam:topic_3325,
         edam:topic_3577 ;
@@ -91158,7 +77314,7 @@ Advances in genome sequencing and genomics research are bringing us closer to a
     sc:url "https://github.com/bristena-op/AnoniMME" .
 
 <https://bio.tools/anota> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0622,
@@ -91178,7 +77334,7 @@ Advances in genome sequencing and genomics research are bringing us closer to a
     biotools:primaryContact "Ola Larsson" .
 
 <https://bio.tools/anota2seq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0204,
@@ -91204,7 +77360,7 @@ Advances in genome sequencing and genomics research are bringing us closer to a
         "Julie Lorent" .
 
 <https://bio.tools/anox> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_2640,
@@ -91219,7 +77375,7 @@ Advances in genome sequencing and genomics research are bringing us closer to a
     biotools:primaryContact <https://orcid.org/0000-0002-9044-139X> .
 
 <https://bio.tools/anoxpepred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -91237,8 +77393,43 @@ Advances in genome sequencing and genomics research are bringing us closer to a
     sc:url "http://services.bioinformatics.dtu.dk/service.php?AnOxPePred-1.0" ;
     biotools:primaryContact <https://orcid.org/0000-0003-2615-5695> .
 
+<https://bio.tools/ansa> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3382 ;
+    sc:citation <https://doi.org/10.1007/S40614-021-00290-2>,
+        "pmcid:PMC8894515",
+        "pubmed:35342875" ;
+    sc:description "Implementing Automated Nonparametric Statistical Analysis on Functional Analysis Data." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_2238 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Other" ;
+    sc:name "ANSA" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://ansa.shinyapps.io/ansa/" .
+
+<https://bio.tools/answer> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application",
+        "Workflow" ;
+    sc:applicationSubCategory edam:topic_0199,
+        edam:topic_2640,
+        edam:topic_3168,
+        edam:topic_3360 ;
+    sc:citation <https://doi.org/10.1200/CCI.21.00113>,
+        "pubmed:35025668" ;
+    sc:description "ANSWER can be used by clinical geneticists or pathologists to identify clinically actionable variants from next-generation sequencing data for the purposes of recommending personalized treatment options." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3675,
+        edam:operation_3920 ;
+    sc:name "ANSWER" ;
+    sc:url "https://answer-wiki.readthedocs.io" .
+
 <https://bio.tools/antar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1261/rna.2387911> ;
@@ -91256,14 +77447,14 @@ Advances in genome sequencing and genomics research are bringing us closer to a
 
 <https://bio.tools/antarna> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0880" ;
-            sc:name "RNA secondary structure" ;
-            sc:sameAs "http://edamontology.org/data_0880" ] ;
+            sc:additionalType "http://edamontology.org/data_0880" ;
+            sc:encodingFormat "http://edamontology.org/format_1457" ;
+            sc:name "RNA secondary structure" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:author <http://orcid.org/0000-0001-8231-3323>,
@@ -91287,7 +77478,7 @@ Advances in genome sequencing and genomics research are bringing us closer to a
         "Robert Kleinkauf" .
 
 <https://bio.tools/anthem> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2830 ;
@@ -91302,7 +77493,7 @@ Advances in genome sequencing and genomics research are bringing us closer to a
     sc:url "http://anthem.erc.monash.edu/" .
 
 <https://bio.tools/antheprot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -91318,19 +77509,55 @@ Advances in genome sequencing and genomics research are bringing us closer to a
     sc:url "http://antheprot-pbil.ibcp.fr/" ;
     biotools:primaryContact "Gilbert Deléage" .
 
-<https://bio.tools/anti-CRISPR> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0154,
-        edam:topic_0622,
-        edam:topic_3557 ;
-    sc:citation <https://doi.org/10.1128/MSYSTEMS.00455-19>,
-        "pmcid:PMC6739104",
-        "pubmed:31506266" ;
-    sc:description "> MEDIUM CONFIDENCE! | > CORRECT NAME OF TOOL COULD ALSO BE 'Acrs', 'Aca', 'self-targeting spacers', 'Acr' | Bioinformatics Identification of Anti-CRISPR Loci by Using Homology, Guilt-by-Association, and CRISPR Self-Targeting Spacer Approaches | Visse funktioner i Excel kan ikke vises i Google Sheets og vil forsvinde, hvis du foretager ændringer | Reference (First author, year, journal) | Tryk på Ctrl-F5 for at opdatere siden, og prøv igen" ;
-    sc:name "anti-CRISPR" ;
-    sc:url "https://tinyurl.com/anti-CRISPR" .
+<https://bio.tools/anthraxkp> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0089,
+        edam:topic_0218,
+        edam:topic_3324,
+        edam:topic_3397,
+        edam:topic_3500 ;
+    sc:citation <https://doi.org/10.1093/DATABASE/BAAC037>,
+        "pmcid:PMC9216567",
+        "pubmed:35653350" ;
+    sc:description "Anthrax Knowledge Portal (AnthraxKP) is a multi-module database management system, which allows researchers to query, browse and download anthrax biomedical resources in multiple formats" ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3280,
+        edam:operation_3625,
+        edam:operation_3778 ;
+    sc:license "Not licensed" ;
+    sc:name "AnthraxKP" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://139.224.212.120:18095/" .
+
+<https://bio.tools/anti-crisprdb> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0114,
+        edam:topic_0196,
+        edam:topic_0203,
+        edam:topic_3068,
+        edam:topic_3168 ;
+    sc:citation <https://doi.org/10.1093/DATABASE/BAAC010>,
+        "pubmed:35348649" ;
+    sc:description "an online repository of anti-CRISPR proteins including information on inhibitory mechanisms, activities and neighbors of curated anti-CRISPR proteins." ;
+    sc:featureList edam:operation_0310,
+        edam:operation_0435,
+        edam:operation_2421,
+        edam:operation_2962 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "Anti-CRISPRdb" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareVersion "2.2" ;
+    sc:url "http://guolab.whu.edu.cn/anti-CRISPRdb/" .
 
 <https://bio.tools/anti-ebola> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0202,
         edam:topic_2275,
@@ -91351,7 +77578,7 @@ Advances in genome sequencing and genomics research are bringing us closer to a
     sc:url "https://bioinfo.imtech.res.in/manojk/antiebola" .
 
 <https://bio.tools/antiangiopred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -91365,11 +77592,11 @@ Advances in genome sequencing and genomics research are bringing us closer to a
         "Mac",
         "Windows" ;
     sc:softwareHelp <http://clri.res.in/subramanian/tools/antiangiopred/index.html> ;
-    sc:url "http://crdd.osdd.net/raghava/antiangiopred/" ;
+    sc:url "http://webs.iiitd.edu.in/raghava/antiangiopred/" ;
     biotools:primaryContact "V Subrmanian" .
 
 <https://bio.tools/antibp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0154 ;
@@ -91382,10 +77609,20 @@ Advances in genome sequencing and genomics research are bringing us closer to a
         "Mac",
         "Windows" ;
     sc:softwareHelp <http://crdd.osdd.net/raghava/antibp/help.html> ;
-    sc:url "http://www.imtech.res.in/raghava/antibp/" .
+    sc:url "https://webs.iiitd.edu.in/raghava/antibp/" .
+
+<https://bio.tools/antibp2> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:applicationSubCategory edam:topic_2814 ;
+    sc:citation "pubmed:20122190" ;
+    sc:description "AntiBP2 server predicts the antibacterial peptides in a protein sequence" ;
+    sc:featureList edam:operation_1777 ;
+    sc:name "antibp2" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/antibp2/index.html> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/antibp2/index.html" .
 
 <https://bio.tools/anticlust> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3372,
@@ -91402,7 +77639,7 @@ Advances in genome sequencing and genomics research are bringing us closer to a
     sc:url "https://m-py.github.io/anticlust/" .
 
 <https://bio.tools/anticp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0121,
@@ -91416,15 +77653,57 @@ Advances in genome sequencing and genomics research are bringing us closer to a
         "Mac",
         "Windows" ;
     sc:softwareHelp <http://crdd.osdd.net/raghava/anticp/help.html> ;
-    sc:url "http://crdd.osdd.net/raghava/anticp/" ;
+    sc:url "https://webs.iiitd.edu.in/raghava/anticp/" ;
     biotools:primaryContact "Gajendra P. S. Raghava" .
 
+<https://bio.tools/anticp2> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:citation "pubmed:32770192" ;
+    sc:description "AntiCP 2.0 is an updated version of AntiCP, developed to predict and design anticancer peptides with high accuracy" ;
+    sc:featureList edam:operation_2997 ;
+    sc:name "anticp2" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/anticp2/index.html> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/anticp2/index.html" .
+
+<https://bio.tools/antidmppred> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0121,
+        edam:topic_0154,
+        edam:topic_3336,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.7717/PEERJ.13581>,
+        "pmcid:PMC9205309",
+        "pubmed:35722269" ;
+    sc:description "The AntiDMPpred tool is a predictor that can be used to foretell if the query peptides might be anti-diabetic bioactive peptides." ;
+    sc:featureList edam:operation_0224,
+        edam:operation_3631,
+        edam:operation_3937 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "AntiDMPpred" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://i.uestc.edu.cn/AntiDMPpred/cgi-bin/AntiDMPpred.pl" .
+
+<https://bio.tools/antifp> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:citation "pubmed:29535692" ;
+    sc:description "Antifp is an in silico method, which is developed to predict and design antifungal peptides. The main dataset used in this method consists of 1459 antifungal peptides." ;
+    sc:featureList edam:operation_0527 ;
+    sc:name "antifp" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/antifp/index.html> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/antifp/index.html" .
+
 <https://bio.tools/antigendb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0804,
-        edam:topic_2830,
         edam:topic_3324 ;
     sc:citation "pubmed:19820110" ;
     sc:description "Contains 500 antigens to pathogenic species curated from the literature and other immunological resources. In it, a database entry contains information regarding the sequence, structure, origin, etc. of an antigen with additional information such as B and T-cell epitopes, MHC binding, function, gene-expression and post translational modifications, where available. It also provides links to major internal and external databases." ;
@@ -91437,18 +77716,16 @@ Advances in genome sequencing and genomics research are bringing us closer to a
         "Mac",
         "Windows" ;
     sc:softwareHelp <http://crdd.osdd.net/raghava/antigendb/info.html> ;
-    sc:url "http://www.imtech.res.in/raghava/antigendb/" .
+    sc:url "http://webs.iiitd.edu.in/raghava/antigendb/" .
 
 <https://bio.tools/antigenic> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2886" ;
-            sc:name "Protein sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2886" ] ;
+            sc:additionalType "http://edamontology.org/data_2886" ;
+            sc:name "Protein sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1534" ;
-            sc:name "Peptide immunogenicity data" ;
-            sc:sameAs "http://edamontology.org/data_1534" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1534" ;
+            sc:name "Peptide immunogenicity data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3511 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -91477,8 +77754,19 @@ Advances in genome sequencing and genomics research are bringing us closer to a
     sc:softwareVersion "r6" ;
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/antigenic.html" .
 
+<https://bio.tools/antimpmod> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:citation "pubmed:30416494" ;
+    sc:description "AntiMPmod is an in silico method, which is developed to predict efficient modified antimicrobial peptides (ModAMP)." ;
+    sc:featureList edam:operation_1777 ;
+    sc:name "antimpmod" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/antimpmod/index.html> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/antimpmod/index.html" .
+
 <https://bio.tools/antiprofiles> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -91497,7 +77785,7 @@ Advances in genome sequencing and genomics research are bringing us closer to a
     biotools:primaryContact "Hector Corrada Bravo" .
 
 <https://bio.tools/antismash> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0623 ;
@@ -91528,7 +77816,7 @@ Advances in genome sequencing and genomics research are bringing us closer to a
     biotools:primaryContact "Contact form" .
 
 <https://bio.tools/antisoma> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0154,
@@ -91546,8 +77834,30 @@ Advances in genome sequencing and genomics research are bringing us closer to a
     sc:softwareHelp <http://thalis.biol.uoa.gr/ANTISOMA/manual.html> ;
     sc:url "http://bioinformatics.biol.uoa.gr/ANTISOMA" .
 
+<https://bio.tools/antitbpdb> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:citation "pubmed:29688365" ;
+    sc:description "AntiTbPdb is a database of experimentally verified anti-tubercular or anti-mycobacterial peptides" ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "AntiTbPdb" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/antitbpdb/> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/antitbpdb/" .
+
+<https://bio.tools/antitbpred> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:citation "pubmed:30210341" ;
+    sc:description "This webserver is designed to predict peptides having effective bactreicidal activity against Mycobacteruium species." ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "AntiTbPred" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/antitbpred/index.html> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/antitbpred/index.html" .
+
 <https://bio.tools/antmap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3053 ;
@@ -91564,7 +77874,7 @@ Advances in genome sequencing and genomics research are bringing us closer to a
     sc:url "http://lbm.ab.a.u-tokyo.ac.jp/~iwata/antmap/index.html" .
 
 <https://bio.tools/antrax> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3382,
         edam:topic_3474,
@@ -91577,7 +77887,7 @@ Advances in genome sequencing and genomics research are bringing us closer to a
     sc:url "http://antrax.readthedocs.io" .
 
 <https://bio.tools/ants> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Suite" ;
     sc:applicationSubCategory edam:topic_0610,
@@ -91595,8 +77905,14 @@ Advances in genome sequencing and genomics research are bringing us closer to a
     sc:name "ANTs" ;
     sc:url "https://github.com/SebastianSosa/ANTs" .
 
+<https://bio.tools/ants_marking_and_analysis_tools> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:description "This tool is provided for marking ant motion trajectories dataset from video. We provide marking software, three data quality analysis scripts, and a tracking performance evaluation tool." ;
+    sc:name "ANTS_marking_and_analysis_tools" ;
+    sc:url "https://github.com/holmescao/ANTS_marking_and_analysis_tools" .
+
 <https://bio.tools/antsx> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_3304,
         edam:topic_3383,
@@ -91614,7 +77930,7 @@ Advances in genome sequencing and genomics research are bringing us closer to a
     sc:url "https://github.com/ANTsX" .
 
 <https://bio.tools/anubis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0203,
@@ -91634,7 +77950,7 @@ Advances in genome sequencing and genomics research are bringing us closer to a
     sc:url "https://github.com/CRG-CNAG/anubis" .
 
 <https://bio.tools/anupp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0121,
@@ -91652,7 +77968,7 @@ Advances in genome sequencing and genomics research are bringing us closer to a
     biotools:primaryContact "Michael Gromiha" .
 
 <https://bio.tools/anvil> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0605,
         edam:topic_2885,
@@ -91669,14 +77985,19 @@ Advances in genome sequencing and genomics research are bringing us closer to a
     sc:url "https://anvilproject.org" .
 
 <https://bio.tools/anvio> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0194,
         edam:topic_3174,
         edam:topic_3301,
         edam:topic_3308,
         edam:topic_3391 ;
-    sc:citation <https://doi.org/10.1038/s41564-020-00834-3> ;
+    sc:citation <https://doi.org/10.1038/s41564-020-00834-3>,
+        <https://doi.org/10.7717/peerj.1319>,
+        "pmcid:PMC4614810",
+        "pmcid:PMC8116326",
+        "pubmed:26500826",
+        "pubmed:33349678" ;
     sc:description "Anvi’o is an open-source, community-driven analysis and visualization platform for microbial ‘omics. It brings together many aspects of today’s cutting-edge strategies including genomics, metagenomics, metatranscriptomics, pangenomics, metapangenomics, phylogenomics, and microbial population genetics in an integrated and easy-to-use fashion through extensive interactive visualization capabilities." ;
     sc:featureList edam:operation_0310,
         edam:operation_0337 ;
@@ -91686,8 +78007,24 @@ Advances in genome sequencing and genomics research are bringing us closer to a
     sc:url "https://merenlab.org/software/anvio/" ;
     biotools:primaryContact "Meren Lab" .
 
+<https://bio.tools/any2fasta> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0622,
+        edam:topic_3572 ;
+    sc:description "Convert various sequence formats to FASTA" ;
+    sc:featureList edam:operation_0233,
+        edam:operation_0335 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "any2fasta" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/tseemann/any2fasta" .
+
 <https://bio.tools/anyexpress> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0203 ;
     sc:description "AnyExpress is a software package that combines cross-platform gene expression data using a fast interval-matching algorithm." ;
@@ -91700,7 +78037,7 @@ Advances in genome sequencing and genomics research are bringing us closer to a
     sc:url "http://anyexpress.sourceforge.net/" .
 
 <https://bio.tools/aodpred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0082,
@@ -91718,7 +78055,7 @@ Advances in genome sequencing and genomics research are bringing us closer to a
     biotools:primaryContact "Hao Lin" .
 
 <https://bio.tools/aom2s> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0154,
@@ -91735,8 +78072,51 @@ Advances in genome sequencing and genomics research are bringing us closer to a
     sc:name "Aom2S" ;
     sc:url "https://mstools.epfl.ch/am2s/" .
 
+<https://bio.tools/aop-helpfinder> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0602,
+        edam:topic_2840,
+        edam:topic_3068,
+        edam:topic_3407,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAB750>,
+        "pmcid:PMC8796376",
+        "pubmed:34718414" ;
+    sc:description "AOP-helpFinder is a web tool for identification and extraction of associations between stressors and biological events at various level of the biological organization (molecular initiating event (MIE), key event (KE), and adverse outcome (AO)). AOP-helpFinder is a hybrid tool, combining text mining and graph theory. Currently, AOP-helpFinder screens all the >30 millions of abstracts available from the PubMed database, to decipher co-mentioned terms (e.g. a stressor and a MIE)." ;
+    sc:featureList edam:operation_0305,
+        edam:operation_0306,
+        edam:operation_1812 ;
+    sc:license "CECILL-2.1" ;
+    sc:name "AOP-helpFinder" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://aop-helpfinder.u-paris-sciences.fr/index.php" ;
+    biotools:primaryContact <https://orcid.org/0000-0001-7525-4089> .
+
+<https://bio.tools/aop-wiki_rdf> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_3786" ;
+            sc:encodingFormat "http://edamontology.org/format_3790" ;
+            sc:name "Query script" ] ;
+    bsc:output [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "SPARQL endpoint",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_2840 ;
+    sc:citation <https://doi.org/10.1089/aivt.2021.0010> ;
+    sc:description "SPARQL interface for AOP-Wiki data" ;
+    sc:featureList edam:operation_2421 ;
+    sc:isAccessibleForFree true ;
+    sc:name "AOP-Wiki RDF" ;
+    sc:url "https://aopwiki.rdf.bigcat-bioinformatics.org/" .
+
 <https://bio.tools/aop4eupest> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0218,
         edam:topic_0602,
@@ -91754,7 +78134,7 @@ Advances in genome sequencing and genomics research are bringing us closer to a
     sc:url "http://www.biomedicale.parisdescartes.fr/aop4EUpest/home.php" .
 
 <https://bio.tools/aopedf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0154,
@@ -91772,7 +78152,7 @@ Advances in genome sequencing and genomics research are bringing us closer to a
     sc:url "https://github.com/ChengF-Lab/AOPEDF" .
 
 <https://bio.tools/apa-scan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0659,
@@ -91794,7 +78174,7 @@ APA-Scan is a python tool which can be downloaded directly from github. Python (
     sc:url "https://github.com/compbiolabucf/APA-Scan" .
 
 <https://bio.tools/apache_taverna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application",
         "Web API",
@@ -91828,7 +78208,7 @@ APA-Scan is a python tool which can be downloaded directly from github. Python (
         "Apache Taverna mailing lists" .
 
 <https://bio.tools/apalyzer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0621,
@@ -91844,7 +78224,7 @@ APA-Scan is a python tool which can be downloaded directly from github. Python (
     sc:url "https://bioconductor.org/packages/release/bioc/html/APAlyzer.html" .
 
 <https://bio.tools/aparecium> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0749,
@@ -91866,7 +78246,7 @@ APA-Scan is a python tool which can be downloaded directly from github. Python (
     sc:url "http://gpcr.ut.ee/aparecium.html" .
 
 <https://bio.tools/apbscore> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_2275,
         edam:topic_3318 ;
@@ -91881,7 +78261,7 @@ APA-Scan is a python tool which can be downloaded directly from github. Python (
     sc:url "https://github.com/BaoJingxiao/APBScore" .
 
 <https://bio.tools/apcoa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0610,
@@ -91898,7 +78278,7 @@ APA-Scan is a python tool which can be downloaded directly from github. Python (
     sc:url "https://biostatistics.mdanderson.org/shinyapps/aPCoA/" .
 
 <https://bio.tools/apcomplex> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0078,
@@ -91920,7 +78300,7 @@ APA-Scan is a python tool which can be downloaded directly from github. Python (
     biotools:primaryContact "Denise Scholtens" .
 
 <https://bio.tools/ape> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -91943,7 +78323,7 @@ APA-Scan is a python tool which can be downloaded directly from github. Python (
     sc:url "https://ape-framework.readthedocs.io/en/latest/" .
 
 <https://bio.tools/apecs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520,
@@ -91960,7 +78340,7 @@ APA-Scan is a python tool which can be downloaded directly from github. Python (
     sc:url "https://trac.nbic.nl/apecs/" .
 
 <https://bio.tools/apeglm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2269,
@@ -91981,7 +78361,7 @@ APA-Scan is a python tool which can be downloaded directly from github. Python (
     biotools:primaryContact "Anqi Zhu" .
 
 <https://bio.tools/aperture> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_2885,
@@ -92000,7 +78380,7 @@ Aperture takes paired-end reads in fastq format as inputs and reports all SVs an
     sc:url "https://github.com/liuhc8/Aperture" .
 
 <https://bio.tools/apex> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0108,
@@ -92019,7 +78399,7 @@ Aperture takes paired-end reads in fastq format as inputs and reports all SVs an
     sc:url "http://sourceforge.net/projects/apexqpt/" .
 
 <https://bio.tools/apex_r> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3293,
@@ -92039,7 +78419,7 @@ Aperture takes paired-end reads in fastq format as inputs and reports all SVs an
     biotools:primaryContact <http://orcid.org/0000-0003-2226-8692> .
 
 <https://bio.tools/aphid> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_3293 ;
@@ -92062,14 +78442,14 @@ Aperture takes paired-end reads in fastq format as inputs and reports all SVs an
 
 <https://bio.tools/aphidbase> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Sequence alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0622 ;
     sc:citation <https://doi.org/10.1111/j.1365-2583.2009.00930.x> ;
@@ -92086,7 +78466,7 @@ Aperture takes paired-end reads in fastq format as inputs and reports all SVs an
     biotools:primaryContact "BIPAA platform" .
 
 <https://bio.tools/apice> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0769 ;
     sc:citation <https://doi.org/10.1101/2021.05.21.445085> ;
@@ -92097,7 +78477,7 @@ Aperture takes paired-end reads in fastq format as inputs and reports all SVs an
     biotools:primaryContact <https://orcid.org/0000-0002-3260-0559> .
 
 <https://bio.tools/apicuron> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1101/2021.02.03.429425> ;
@@ -92109,29 +78489,79 @@ Aperture takes paired-end reads in fastq format as inputs and reports all SVs an
     biotools:primaryContact <https://orcid.org/0000-0003-4525-7793> .
 
 <https://bio.tools/apid> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2764" ;
+            sc:encodingFormat "http://edamontology.org/format_1963" ;
+            sc:name "Protein name (UniProt)" ] ;
+    bsc:output [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:name "Pathway or network" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
-    sc:applicationSubCategory edam:topic_0078,
-        edam:topic_0128,
-        edam:topic_0130,
-        edam:topic_0602,
-        edam:topic_3557 ;
-    sc:citation "pubmed:16845013" ;
-    sc:description "Agile Protein Interaction DataAnalyzer (APID) allows you to query protein-protein interactions using a common platform facilitating comparison across different datasets. Currently supported interaction databases are BIND, HPRD, DIP, IntAct, and MINT." ;
-    sc:featureList edam:operation_0224,
-        edam:operation_2464,
-        edam:operation_2492,
-        edam:operation_2949 ;
+    sc:applicationSubCategory edam:topic_0128,
+        edam:topic_0602 ;
+    sc:author <https://orcid.org/0000-0003-1015-9923> ;
+    sc:citation <https://doi.org/10.1093/database/baz005>,
+        <https://doi.org/10.1093/nar/gkw363>,
+        "pmcid:PMC4987915",
+        "pmcid:PMC6354026",
+        "pubmed:27131791",
+        "pubmed:30715274" ;
+    sc:description """APID Interactomes provides a comprehensive collection of protein interactomes for more than 500 organisms based on the integration of known experimentally validated protein-protein physical interactions (PPIs). Construction of the interactomes is done with a methodological approach to report quality levels and coverage over the proteomes for each organism included.
+APID unifies PPIs from primary databases of molecular interactions (BIND, BioGRID, DIP, HPRD, IntAct, MINT) and from experimentally resolved 3D structures (PDB) where more than two distinct proteins have been identified. APID also includes a data visualization web-tool that allows the construction of sub-interactomes using query lists of proteins of interest and the visual exploration of the corresponding networks, including an interactive selection of the properties of the interactions reliability of the "edges") and a mapping of the functional environment of the proteins (functional annotations of the "nodes").""" ;
+    sc:featureList edam:operation_0276,
+        edam:operation_3094,
+        edam:operation_3925 ;
+    sc:isAccessibleForFree true ;
+    sc:license "CC-BY-4.0" ;
     sc:name "APID" ;
     sc:operatingSystem "Linux",
         "Mac",
         "Windows" ;
-    sc:softwareHelp <http://cicblade.dep.usal.es:8080/APID/init.action#> ;
-    sc:url "http://bioinfow.dep.usal.es/apid/" ;
-    biotools:primaryContact "De Las Rivas J." .
+    sc:provider <https://orcid.org/0000-0002-0984-9946> ;
+    sc:softwareHelp <http://cicblade.dep.usal.es:8080/APID/init.action#tabr4> ;
+    sc:url "http://apid.dep.usal.es" ;
+    biotools:primaryContact <https://orcid.org/0000-0002-0984-9946>,
+        <https://orcid.org/0000-0003-1015-9923> .
+
+<https://bio.tools/apid_interactomes> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2764" ;
+            sc:encodingFormat "http://edamontology.org/format_1963" ;
+            sc:name "Protein name (UniProt)" ] ;
+    bsc:output [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:name "Pathway or network" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0128,
+        edam:topic_0602 ;
+    sc:author <https://orcid.org/0000-0003-1015-9923> ;
+    sc:citation <https://doi.org/10.1093/database/baz005>,
+        <https://doi.org/10.1093/nar/gkw363>,
+        "pmcid:PMC4987915",
+        "pmcid:PMC6354026",
+        "pubmed:27131791",
+        "pubmed:30715274" ;
+    sc:description """APID Interactomes provides a comprehensive collection of protein interactomes for more than 500 organisms based on the integration of known experimentally validated protein-protein physical interactions (PPIs). Construction of the interactomes is done with a methodological approach to report quality levels and coverage over the proteomes for each organism included.
+APID unifies PPIs from primary databases of molecular interactions (BIND, BioGRID, DIP, HPRD, IntAct, MINT) and from experimentally resolved 3D structures (PDB) where more than two distinct proteins have been identified. APID also includes a data visualization web-tool that allows the construction of sub-interactomes using query lists of proteins of interest and the visual exploration of the corresponding networks, including an interactive selection of the properties of the interactions reliability of the "edges") and a mapping of the functional environment of the proteins (functional annotations of the "nodes").""" ;
+    sc:featureList edam:operation_0276,
+        edam:operation_3094,
+        edam:operation_3925 ;
+    sc:isAccessibleForFree true ;
+    sc:license "CC-BY-NC-4.0" ;
+    sc:name "APID Interactomes" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:provider <https://orcid.org/0000-0002-0984-9946> ;
+    sc:softwareHelp <http://cicblade.dep.usal.es:8080/APID/init.action#tabr4> ;
+    sc:url "http://apid.dep.usal.es" ;
+    biotools:primaryContact <https://orcid.org/0000-0002-0984-9946>,
+        <https://orcid.org/0000-0003-1015-9923> .
 
 <https://bio.tools/apin> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
         edam:topic_3474 ;
@@ -92148,7 +78578,7 @@ BACKGROUND:Antibiotic resistance has become an increasingly serious problem in t
     sc:url "https://github.com/zhanglabNKU/APIN" .
 
 <https://bio.tools/apir> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -92169,7 +78599,7 @@ BACKGROUND:Antibiotic resistance has become an increasingly serious problem in t
     sc:url "https://github.com/yiling0210/APIR" .
 
 <https://bio.tools/apl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3053,
@@ -92185,7 +78615,7 @@ BACKGROUND:Antibiotic resistance has become an increasingly serious problem in t
     biotools:primaryContact "John P. Hussman Institute for Human Genomics" .
 
 <https://bio.tools/aplcms> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3170,
@@ -92205,14 +78635,14 @@ There are two major routes of data analysis. The first, which we call unsupervis
 
 <https://bio.tools/apltomgfconverter> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0944" ;
-            sc:name "Peptide mass fingerprint" ;
-            sc:sameAs "http://edamontology.org/data_0944" ] ;
+            sc:additionalType "http://edamontology.org/data_0944" ;
+            sc:encodingFormat "http://edamontology.org/format_3714" ;
+            sc:name "Peptide mass fingerprint" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0944" ;
-            sc:name "Peptide mass fingerprint" ;
-            sc:sameAs "http://edamontology.org/data_0944" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0944" ;
+            sc:encodingFormat "http://edamontology.org/format_3651" ;
+            sc:name "Peptide mass fingerprint" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -92223,32 +78653,19 @@ There are two major routes of data analysis. The first, which we call unsupervis
     sc:softwareHelp <https://www.wehi.edu.au/people/andrew-webb/1298/apl-mgf-converter> ;
     sc:url "http://www.wehi.edu.au/people/andrew-webb/1298/apl-mgf-converter" .
 
-<https://bio.tools/apoCIV> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0121,
-        edam:topic_0154,
-        edam:topic_3360,
-        edam:topic_3379,
-        edam:topic_3520 ;
-    sc:citation <https://doi.org/10.1074/MCP.RA119.001765>,
-        "pmcid:PMC6885709",
-        "pubmed:31591263" ;
-    sc:description """Absolute Quantification of Apolipoproteins Following Treatment with Omega-3 Carboxylic Acids and Fenofibrate Using a High Precision Stable Isotope-labeled Recombinant Protein Fragments Based SRM Assay.
-
-/Panorama Public/2019/KTH Uhlen Lab.
-
-KTH Uhlen Lab - APO-project (Effect1).
-
-Stable isotope-labeled standard (SIS) peptides are used as internal standards in targeted proteomics to provide robust protein quantification, which is required in clinical settings.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'apoAII', 'SIS PrESTs', 'SIS', 'PrESTs'""" ;
-    sc:featureList edam:operation_3435,
-        edam:operation_3454,
-        edam:operation_3799 ;
-    sc:name "apoCIV" ;
-    sc:url "https://panoramaweb.org/apo.url" .
+<https://bio.tools/apocand> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:citation "pubmed:26861916" ;
+    sc:description "ApoCanD: Database of Human Apoptotic Proteins in the context of cancer" ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "apocand" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/apocand/index.php> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/apocand/index.php" .
 
 <https://bio.tools/apod> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0154,
@@ -92260,11 +78677,15 @@ Stable isotope-labeled standard (SIS) peptides are used as internal standards in
     sc:description "APOD (Accurate Predictor Of Disordered flexible linkers) is an accurate sequence-based predictor of disordered flexible linkers. It utilizes both local- and protein-level inputs that quantify propensity for disorder, sequence composition, sequence conservation and selected putative structural properties." ;
     sc:featureList edam:operation_0267,
         edam:operation_3904 ;
+    sc:isAccessibleForFree true ;
     sc:name "APOD" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
     sc:url "https://yanglab.nankai.edu.cn/APOD/" .
 
 <https://bio.tools/apodhin> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0602,
@@ -92282,7 +78703,7 @@ Stable isotope-labeled standard (SIS) peptides are used as internal standards in
     sc:url "http://www.hpppi.iicb.res.in/APODHIN/home.html" .
 
 <https://bio.tools/apollo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0219,
@@ -92302,7 +78723,7 @@ Stable isotope-labeled standard (SIS) peptides are used as internal standards in
     biotools:primaryContact "Apollo team" .
 
 <https://bio.tools/apollo-seq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
@@ -92320,7 +78741,7 @@ Stable isotope-labeled standard (SIS) peptides are used as internal standards in
     sc:url "https://github.com/CMU-SAFARI/Apollo" .
 
 <https://bio.tools/apopred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0820,
@@ -92336,7 +78757,7 @@ Stable isotope-labeled standard (SIS) peptides are used as internal standards in
     sc:url "http://tang-biolab.com/server/ApoPred/service.html" .
 
 <https://bio.tools/app-builder-simbiology-models> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2259 ;
@@ -92352,7 +78773,7 @@ Stable isotope-labeled standard (SIS) peptides are used as internal standards in
     biotools:primaryContact "Fulden Buyukozturk" .
 
 <https://bio.tools/apparent> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2885,
@@ -92376,7 +78797,7 @@ Stable isotope-labeled standard (SIS) peptides are used as internal standards in
     biotools:primaryContact "Arthur Melo" .
 
 <https://bio.tools/appeco> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_3379,
         edam:topic_3416 ;
@@ -92389,7 +78810,7 @@ Stable isotope-labeled standard (SIS) peptides are used as internal standards in
     sc:url "http://www.appeco.net" .
 
 <https://bio.tools/appex> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0157,
         edam:topic_0203,
@@ -92406,7 +78827,7 @@ Stable isotope-labeled standard (SIS) peptides are used as internal standards in
     sc:url "http://www.appex.kr/appex/" .
 
 <https://bio.tools/apples> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_0780,
@@ -92423,7 +78844,7 @@ Stable isotope-labeled standard (SIS) peptides are used as internal standards in
     biotools:primaryContact "Eran Tauber" .
 
 <https://bio.tools/apples-phylogeny> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3174,
         edam:topic_3293 ;
@@ -92438,7 +78859,7 @@ Stable isotope-labeled standard (SIS) peptides are used as internal standards in
     sc:url "http://github.com/balabanmetin/apples" .
 
 <https://bio.tools/appleseed> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3304,
@@ -92456,7 +78877,7 @@ Stable isotope-labeled standard (SIS) peptides are used as internal standards in
     sc:url "https://github.com/mhpuglia/APPLESEED" .
 
 <https://bio.tools/appris> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web API",
         "Web application" ;
@@ -92479,18 +78900,16 @@ Stable isotope-labeled standard (SIS) peptides are used as internal standards in
     sc:operatingSystem "Linux",
         "Mac",
         "Windows" ;
-    sc:provider "CNIO",
-        "INB",
-        "cnio.es" ;
+    sc:provider "BU_CNIO",
+        "CNIO",
+        "INB" ;
     sc:softwareHelp <http://appris-tools.org/#/help/intro>,
         <http://apprisws.bioinfo.cnio.es/apidoc/> ;
     sc:softwareVersion "202011_v37" ;
-    sc:url "http://appris-tools.org" ;
-    biotools:primaryContact "Jose Rodriguez",
-        "Michael Tress" .
+    sc:url "http://appris-tools.org" .
 
 <https://bio.tools/approve> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0099,
@@ -92509,7 +78928,7 @@ Stable isotope-labeled standard (SIS) peptides are used as internal standards in
     biotools:primaryContact "Thomas Harrison" .
 
 <https://bio.tools/approximantcoefficientssir> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3305,
@@ -92526,7 +78945,7 @@ Stable isotope-labeled standard (SIS) peptides are used as internal standards in
     biotools:primaryContact "Nathaniel Barlow" .
 
 <https://bio.tools/apptest> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0176 ;
@@ -92542,7 +78961,7 @@ Stable isotope-labeled standard (SIS) peptides are used as internal standards in
     biotools:primaryContact <https://orcid.org/0000-0002-6626-3829> .
 
 <https://bio.tools/appyters> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Workbench" ;
     sc:applicationSubCategory edam:topic_0769,
@@ -92564,7 +78983,7 @@ Stable isotope-labeled standard (SIS) peptides are used as internal standards in
     sc:url "https://appyters.maayanlab.cloud" .
 
 <https://bio.tools/aprbind> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
         edam:topic_3474 ;
@@ -92578,7 +78997,7 @@ Stable isotope-labeled standard (SIS) peptides are used as internal standards in
     sc:url "https://github.com/ChunhuaLiLab/aPRbind" .
 
 <https://bio.tools/apricot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0128,
@@ -92593,7 +79012,7 @@ Stable isotope-labeled standard (SIS) peptides are used as internal standards in
     biotools:primaryContact "Support" .
 
 <https://bio.tools/apricot-platform> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_3068,
         edam:topic_3070,
@@ -92612,8 +79031,27 @@ Scientific publications are meant to exchange knowledge among researchers but th
     sc:name "APRICOT" ;
     sc:url "https://github.com/grycap/apricot" .
 
+<https://bio.tools/apscale> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0632,
+        edam:topic_0769,
+        edam:topic_3050 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC588>,
+        "pubmed:36029248" ;
+    sc:description "Apscale is a metabarcoding pipeline that handles the most common tasks in metabarcoding pipelines like paired-end merging, primer trimming, quality filtering, otu clustering and denoising as well as an otu filtering step." ;
+    sc:featureList edam:operation_0232,
+        edam:operation_3192 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "APSCALE" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/DominikBuchner/apscale" .
+
 <https://bio.tools/apse> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3068 ;
     sc:citation <https://doi.org/10.1038/549031c> ;
@@ -92628,8 +79066,18 @@ Scientific publications are meant to exchange knowledge among researchers but th
     sc:url "http://pubmed.ict.griffith.edu.au/" ;
     biotools:primaryContact "Australia" .
 
+<https://bio.tools/apssp> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:description "This server allow to predict the secondary structure of protein's from their amino acid sequence" ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "apssp" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/apssp/> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/apssp/" .
+
 <https://bio.tools/apssp2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_3542 ;
@@ -92640,18 +79088,18 @@ Scientific publications are meant to exchange knowledge among researchers but th
         edam:operation_2479,
         edam:operation_2488 ;
     sc:name "APSSP2" ;
-    sc:url "http://www.imtech.res.in/raghava/apssp2/" .
+    sc:url "https://webs.iiitd.edu.in/raghava/apssp2/" .
 
 <https://bio.tools/apt> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ] ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Nucleic acid sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_3003" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_1317,
@@ -92667,7 +79115,7 @@ Scientific publications are meant to exchange knowledge among researchers but th
     biotools:primaryContact "Howard Y Chang" .
 
 <https://bio.tools/aptablocks> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_3374 ;
@@ -92679,7 +79127,7 @@ Scientific publications are meant to exchange knowledge among researchers but th
     sc:url "https://github.com/wyjhxq/AptaBlocks" .
 
 <https://bio.tools/aptacluster> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3071,
@@ -92695,7 +79143,7 @@ Scientific publications are meant to exchange knowledge among researchers but th
     sc:url "https://www.ncbi.nlm.nih.gov/CBBresearch/Przytycka/index.cgi#aptatools" .
 
 <https://bio.tools/aptani> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_3511 ;
@@ -92710,7 +79158,7 @@ Scientific publications are meant to exchange knowledge among researchers but th
     biotools:primaryContact "Silvio Bicciato" .
 
 <https://bio.tools/aptardi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_0749,
@@ -92732,7 +79180,7 @@ Scientific publications are meant to exchange knowledge among researchers but th
     biotools:primaryContact <https://orcid.org/0000-0003-0016-9431> .
 
 <https://bio.tools/aptcompare> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0160,
@@ -92746,7 +79194,7 @@ Scientific publications are meant to exchange knowledge among researchers but th
     sc:url "https://bitbucket.org/shiehk/aptcompare" .
 
 <https://bio.tools/aptct> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3393 ;
@@ -92761,14 +79209,13 @@ Scientific publications are meant to exchange knowledge among researchers but th
 
 <https://bio.tools/aqmm> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2526" ;
-            sc:name "Text data" ;
-            sc:sameAs "http://edamontology.org/data_2526" ] ;
+            sc:additionalType "http://edamontology.org/data_2526" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Text data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2526" ;
-            sc:name "Text data" ;
-            sc:sameAs "http://edamontology.org/data_2526" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2526" ;
+            sc:name "Text data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3307 ;
     sc:description "The AQMM was developed to perform absolute quantification of multiple metagenomes and it's parallel metatranscriptome. In order to use this algorithm, the experiment should be designed with both metagenome and metatranscriptome data. From the initial stage, the molecular experimental data should be recorded to help on estimating the overall DNA or RNA of a unit (ml/gram) of the sample. The AQMM was demonstrated to obtain better results of differential expression genes identification in comparative metatranscriptomic studies." ;
@@ -92782,7 +79229,7 @@ Scientific publications are meant to exchange knowledge among researchers but th
     sc:url "https://github.com/biofuture/aqmm" .
 
 <https://bio.tools/aqua> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0593,
         edam:topic_2814 ;
@@ -92795,7 +79242,7 @@ Scientific publications are meant to exchange knowledge among researchers but th
     sc:url "https://code.google.com/archive/p/aquad/" .
 
 <https://bio.tools/aqua-hichip> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3169,
@@ -92815,7 +79262,7 @@ Induced chromatin interactions anchored with protein contacts will be readily di
     sc:url "https://github.com/GryderArt/AQuA-HiChIP" .
 
 <https://bio.tools/aqua_SPARC> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0089,
@@ -92837,24 +79284,41 @@ Induced chromatin interactions anchored with protein contacts will be readily di
     sc:softwareHelp <https://github.com/SPARC-FAIR-Codeathon/aqua/blob/main/Documentation/Documentation.md> ;
     sc:url "https://github.com/SPARC-FAIR-Codeathon/aqua" .
 
+<https://bio.tools/aquadesign> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library",
+        "Script" ;
+    sc:applicationSubCategory edam:topic_0610,
+        edam:topic_0749,
+        edam:topic_3500,
+        edam:topic_3810 ;
+    sc:citation <https://doi.org/10.1371/JOURNAL.PONE.0272508>,
+        "pmcid:PMC9342733",
+        "pubmed:35913974" ;
+    sc:description "A tool to assist aquaculture production design based on abiotic requirements of animal species." ;
+    sc:featureList edam:operation_3960 ;
+    sc:license "Not licensed" ;
+    sc:name "AquaDesign" ;
+    sc:url "https://github.com/GregoireButruille/AquaDesign" .
+
 <https://bio.tools/aquaria> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1096" ;
-            sc:name "Sequence accession (protein)" ;
-            sc:sameAs "http://edamontology.org/data_1096" ],
+            sc:additionalType "http://edamontology.org/data_1869" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Organism identifier" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1869" ;
-            sc:name "Organism identifier" ;
-            sc:sameAs "http://edamontology.org/data_1869" ],
+            sc:additionalType "http://edamontology.org/data_1063" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Sequence identifier" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1063" ;
-            sc:name "Sequence identifier" ;
-            sc:sameAs "http://edamontology.org/data_1063" ] ;
+            sc:additionalType "http://edamontology.org/data_1096" ;
+            sc:encodingFormat "http://edamontology.org/format_1963" ;
+            sc:name "Sequence accession (protein)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0893" ;
-            sc:name "Sequence-structure alignment" ;
-            sc:sameAs "http://edamontology.org/data_0893" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0893" ;
+            sc:encodingFormat "http://edamontology.org/format_3464" ;
+            sc:name "Sequence-structure alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
@@ -92901,7 +79365,7 @@ Induced chromatin interactions anchored with protein contacts will be readily di
         "Seán O'Donoghue" .
 
 <https://bio.tools/aquarium> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3068,
@@ -92922,7 +79386,7 @@ Induced chromatin interactions anchored with protein contacts will be readily di
     sc:url "https://www.aquarium.bio/" .
 
 <https://bio.tools/aquarium_trade_date_data> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_3050,
         edam:topic_3500 ;
@@ -92944,7 +79408,7 @@ Read more about the global trade of clownfish by RET TALBOT""" ;
     sc:url "https://www.aquariumtradedata.org/" .
 
 <https://bio.tools/aquasaxs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2275,
         edam:topic_2828 ;
@@ -92960,7 +79424,7 @@ Read more about the global trade of clownfish by RET TALBOT""" ;
     biotools:primaryContact "Poitevin F." .
 
 <https://bio.tools/ar2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3303,
         edam:topic_3384 ;
@@ -92972,7 +79436,7 @@ Read more about the global trade of clownfish by RET TALBOT""" ;
     sc:url "https://github.com/shennanw/AR2" .
 
 <https://bio.tools/ar_nhpred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0128,
@@ -92990,11 +79454,11 @@ Read more about the global trade of clownfish by RET TALBOT""" ;
         "Mac",
         "Windows" ;
     sc:softwareHelp <http://crdd.osdd.net/raghava/ar_nhpred/> ;
-    sc:url "http://www.imtech.res.in/raghava/ar_nhpred" ;
+    sc:url "https://webs.iiitd.edu.in/raghava/ar_nhpred" ;
     biotools:primaryContact "Dr. G. P. S. Raghava" .
 
 <https://bio.tools/arabidopsis_efp_browser> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_3277,
         edam:topic_3518 ;
@@ -93010,14 +79474,12 @@ Read more about the global trade of clownfish by RET TALBOT""" ;
 
 <https://bio.tools/arabidopsis_growth_regulators_network> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ] ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:name "Pathway or network" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:name "Pathway or network" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0780 ;
@@ -93033,7 +79495,7 @@ Read more about the global trade of clownfish by RET TALBOT""" ;
     sc:url "http://bioinformatics.psb.ugent.be/supplementary_data/ehsab/gene_prioritization/" .
 
 <https://bio.tools/arachne> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0622,
@@ -93051,14 +79513,14 @@ Read more about the global trade of clownfish by RET TALBOT""" ;
 
 <https://bio.tools/arachne_neural> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2082" ;
-            sc:name "Matrix" ;
-            sc:sameAs "http://edamontology.org/data_2082" ] ;
+            sc:additionalType "http://edamontology.org/data_2082" ;
+            sc:encodingFormat "http://edamontology.org/format_3626" ;
+            sc:name "Matrix" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:encodingFormat "http://edamontology.org/format_2013" ;
+            sc:name "Pathway or network" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2269,
@@ -93079,7 +79541,7 @@ Read more about the global trade of clownfish by RET TALBOT""" ;
     biotools:primaryContact "Leonid Savtchenko" .
 
 <https://bio.tools/arachnoserver> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0089,
@@ -93100,7 +79562,7 @@ Read more about the global trade of clownfish by RET TALBOT""" ;
     biotools:primaryContact "ArachnoServer Support" .
 
 <https://bio.tools/aracne> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2259 ;
@@ -93118,18 +79580,17 @@ Read more about the global trade of clownfish by RET TALBOT""" ;
 
 <https://bio.tools/aradeepopsis> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ] ;
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3603" ;
+            sc:name "Image" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ],
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0625,
@@ -93158,16 +79619,48 @@ Read more about the global trade of clownfish by RET TALBOT""" ;
         "1.3.1" ;
     sc:url "https://github.com/Gregor-Mendel-Institute/aradeepopsis" .
 
+<https://bio.tools/aragorn> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0622,
+        edam:topic_0659 ;
+    sc:citation <https://doi.org/10.1093/nar/gkh152>,
+        "pmcid:PMC373265",
+        "pubmed:14704338" ;
+    sc:description "ARAGORN detects tRNA, mtRNA info about tmRNA, and tmRNA genes" ;
+    sc:featureList edam:operation_2454 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "aragorn" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://www.ansikte.se/ARAGORN/" .
+
+<https://bio.tools/arakno> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0089,
+        edam:topic_0769,
+        edam:topic_3050 ;
+    sc:citation <https://doi.org/10.1636/JoA-S-21-024> ;
+    sc:description "arakno is an R package for effective spider nomenclature, distribution and trait data retrieval from online resources. Online open databases are increasing in number, usefulness, and ease of use. There are currently two main global databases exclusive for spiders, the World Spider Catalogue (WSC) and the World Spider Trait (WST) database. Both are regularly used by thousands of researchers. Computational tools that allow effective processing of large data are now part of the workflow of any researcher and R is becoming a de facto standard for data manipulation, analysis, and presentation. Here we present an R package, arakno , that allows interface with the two databases. Implemented tools include checking species names against nomenclature of the WSC, obtaining and mapping data on distribution of species from both WST and the Global Biodiversity Information Facility (GBIF), and downloading trait data from the WST." ;
+    sc:featureList edam:operation_2422 ;
+    sc:license "GPL-3.0" ;
+    sc:name "arakno" ;
+    sc:softwareHelp <https://cran.r-project.org/web/packages/arakno/arakno.pdf> ;
+    sc:url "https://CRAN.R-project.org/package=arakno" ;
+    biotools:primaryContact <https://orcid.org/0000-0001-8119-9960> .
+
 <https://bio.tools/aramemnon> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1895" ;
-            sc:name "Locus ID (AGI)" ;
-            sc:sameAs "http://edamontology.org/data_1895" ] ;
+            sc:additionalType "http://edamontology.org/data_1895" ;
+            sc:name "Locus ID (AGI)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Protein features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0780,
         edam:topic_0820 ;
@@ -93186,7 +79679,7 @@ Read more about the global trade of clownfish by RET TALBOT""" ;
     biotools:primaryContact "Rainer Schwacke" .
 
 <https://bio.tools/aramis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0196,
@@ -93204,7 +79697,7 @@ Read more about the global trade of clownfish by RET TALBOT""" ;
     biotools:primaryContact "B Aguado" .
 
 <https://bio.tools/arapheno> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0625,
@@ -93228,7 +79721,7 @@ Read more about the global trade of clownfish by RET TALBOT""" ;
     sc:url "https://arapheno.1001genomes.org" .
 
 <https://bio.tools/araport> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0622,
@@ -93247,7 +79740,7 @@ Read more about the global trade of clownfish by RET TALBOT""" ;
     sc:url "https://www.araport.org/" .
 
 <https://bio.tools/araqtl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3360,
@@ -93266,10 +79759,10 @@ It allows easy access to the data of all published Arabidopsis thaliana genetica
 
 <https://bio.tools/arb> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1234" ;
-            sc:name "Sequence set (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1234" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1234" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence set (nucleic acid)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0084 ;
@@ -93303,8 +79796,23 @@ It allows easy access to the data of all published Arabidopsis thaliana genetica
     sc:url "http://arb-home.de" ;
     biotools:primaryContact "ARB Users Mailing List" .
 
+<https://bio.tools/arbic> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_3170,
+        edam:topic_3518 ;
+    sc:citation <https://doi.org/10.21203/RS.3.RS-936551/V1> ;
+    sc:description "ARBic is an All-Round Biclustering Algorithm for Analyzing Gene Expression Data. Identifying significant biclusters of genes with specific expression patterns is an effective approach to reveal functionally correlated genes in gene expression data. However, existing algorithms are limited to finding either broad or narrow biclusters but both due to failure of balancing between effectiveness and efficiency. ARBic can accurately identify any meaningful biclusters of shape no matter broad or narrow in a large scale gene expression data matrix, even when the values in the biclusters to be identified have the same distribution as that the background data has. ARBic is developed by integrating column-based and row-based strategies into biclustering procedure. The column-based strategy borrowed from ReBic, a recently published biclustering tool, prefers to narrow bicluters." ;
+    sc:featureList edam:operation_3463,
+        edam:operation_3501 ;
+    sc:license "MIT" ;
+    sc:name "ARBic" ;
+    sc:url "https://github.com/holyzews/ARBic" ;
+    biotools:primaryContact "Guojun Li" .
+
 <https://bio.tools/arbitr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
@@ -93320,7 +79828,7 @@ It allows easy access to the data of all published Arabidopsis thaliana genetica
     sc:url "https://github.com/markhilt/ARBitR" .
 
 <https://bio.tools/arbitrator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654 ;
@@ -93337,7 +79845,7 @@ It allows easy access to the data of all published Arabidopsis thaliana genetica
     biotools:primaryContact "Jonathan P. Zehr" .
 
 <https://bio.tools/arboreto> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
         edam:topic_3170 ;
@@ -93356,7 +79864,7 @@ Free document hosting provided by Read the Docs.""" ;
     sc:url "http://arboreto.readthedocs.io" .
 
 <https://bio.tools/arboretum> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3053,
@@ -93371,7 +79879,7 @@ Free document hosting provided by Read the Docs.""" ;
     sc:url "http://pages.discovery.wisc.edu/~sroy/arboretum/" .
 
 <https://bio.tools/arc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196 ;
     sc:description "ARC is a pipeline which facilitates iterative, reference guided de novo assemblies." ;
@@ -93385,7 +79893,7 @@ Free document hosting provided by Read the Docs.""" ;
     sc:url "http://ibest.github.io/ARC/" .
 
 <https://bio.tools/arc-covid19> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0607,
         edam:topic_3068,
@@ -93402,7 +79910,7 @@ Free document hosting provided by Read the Docs.""" ;
     sc:url "http://arc.epfl.ch" .
 
 <https://bio.tools/arcadia> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2259 ;
@@ -93419,18 +79927,18 @@ Free document hosting provided by Read the Docs.""" ;
 
 <https://bio.tools/archaeafun> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2955" ;
-            sc:name "Sequence report" ;
-            sc:sameAs "http://edamontology.org/data_2955" ],
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:encodingFormat "http://edamontology.org/format_2305" ;
+            sc:name "Protein features" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2955" ;
+            sc:encodingFormat "http://edamontology.org/format_2333" ;
+            sc:name "Sequence report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_1775 ;
     sc:citation <https://doi.org/10.1110/ps.0225102>,
@@ -93452,7 +79960,7 @@ Free document hosting provided by Read the Docs.""" ;
     biotools:primaryContact <https://orcid.org/0000-0003-0316-5866> .
 
 <https://bio.tools/archaeopteryx> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0194,
@@ -93472,7 +79980,7 @@ Free document hosting provided by Read the Docs.""" ;
     biotools:primaryContact "Tan Jie" .
 
 <https://bio.tools/archcandy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3510 ;
@@ -93489,7 +79997,7 @@ Free document hosting provided by Read the Docs.""" ;
     biotools:primaryContact "Andrey V. Kajava" .
 
 <https://bio.tools/archdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0166 ;
     sc:author <http://orcid.org/0000-0001-5210-4387> ;
@@ -93507,7 +80015,7 @@ Free document hosting provided by Read the Docs.""" ;
     sc:url "http://sbi.imim.es/archdb/" .
 
 <https://bio.tools/archidart> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0780 ;
@@ -93524,7 +80032,7 @@ Free document hosting provided by Read the Docs.""" ;
     sc:url "https://archidart.github.io" .
 
 <https://bio.tools/archip> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0121,
@@ -93540,8 +80048,27 @@ Free document hosting provided by Read the Docs.""" ;
     sc:url "http://mouse.belozersky.msu.ru/~evgeniy/cgi-bin/proton/proton.php?subproj=archip" ;
     biotools:primaryContact "Evgeniy Aksianov" .
 
+<https://bio.tools/architect> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0602,
+        edam:topic_0621,
+        edam:topic_0821,
+        edam:topic_3407 ;
+    sc:citation <https://doi.org/10.1101/2021.10.12.464133> ;
+    sc:description "Architect is a tool for producing high-quality metabolic models through improved enzyme annotation. Architect is a pipeline for automatic metabolic model reconstruction. Given the protein sequences of an organism, enzyme annotation is first performed through ensemble approaches (that is, combining predictions from individual enzyme annotation tools), followed by gap-filling." ;
+    sc:featureList edam:operation_3092,
+        edam:operation_3660,
+        edam:operation_3929 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "Architect" ;
+    sc:url "https://github.com/ParkinsonLab/Architect" ;
+    biotools:primaryContact "John Parkinson" .
+
 <https://bio.tools/archki> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0166,
@@ -93557,7 +80084,7 @@ Free document hosting provided by Read the Docs.""" ;
     sc:url "http://bioinf.uab.es/cgi-bin/archki/loops.pl?class=all&set=ArchKI" .
 
 <https://bio.tools/archpred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -93579,7 +80106,7 @@ Free document hosting provided by Read the Docs.""" ;
     biotools:primaryContact "biosilico Support" .
 
 <https://bio.tools/archr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0749,
@@ -93597,7 +80124,7 @@ Free document hosting provided by Read the Docs.""" ;
     sc:url "http://www.ArchRProject.com" .
 
 <https://bio.tools/archschema> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btq119> ;
@@ -93610,8 +80137,22 @@ Free document hosting provided by Read the Docs.""" ;
     sc:softwareVersion "1.1" ;
     sc:url "http://www.ebi.ac.uk/Tools/archschema/" .
 
+<https://bio.tools/arcs> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0196,
+        edam:topic_0622 ;
+    sc:citation <https://doi.org/10.1093/bioinformatics/btx675> ;
+    sc:description "Scaffolding genome assemblies using 10X Genomics Chromium data or stLFR linked reads" ;
+    sc:featureList edam:operation_0525,
+        edam:operation_3216 ;
+    sc:license "GPL-3.0" ;
+    sc:name "ARCS" ;
+    sc:softwareVersion "1.2.4" ;
+    sc:url "https://github.com/bcgsc/ARCS/" .
+
 <https://bio.tools/arct> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0654,
@@ -93627,7 +80168,7 @@ Free document hosting provided by Read the Docs.""" ;
     sc:url "http://genomics.senescence.info/software/perl.html" .
 
 <https://bio.tools/ard2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1371/journal.pone.0079894> ;
@@ -93642,14 +80183,13 @@ Free document hosting provided by Read the Docs.""" ;
 
 <https://bio.tools/ardock> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1127" ;
-            sc:name "PDB ID" ;
-            sc:sameAs "http://edamontology.org/data_1127" ],
+            sc:additionalType "http://edamontology.org/data_1127" ;
+            sc:name "PDB ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein structure" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0166,
@@ -93674,8 +80214,22 @@ Free document hosting provided by Read the Docs.""" ;
     sc:url "http://ardock.ibcp.fr" ;
     biotools:primaryContact "Guillaume Launay" .
 
+<https://bio.tools/areadata> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0602,
+        edam:topic_0769,
+        edam:topic_3305 ;
+    sc:citation <https://doi.org/10.1101/2021.10.05.463057> ;
+    sc:description "AREAdata is a worldwide climate dataset averaged across spatial units at different scales through time. It is a PearseLab data resource where you can download daily estimates of climate/environmental data which have been averaged across different levels of spatial units. Additionally, we include data on population density and estimates from future climate forecasting models at the same spatial levels." ;
+    sc:featureList edam:operation_2428 ;
+    sc:license "GPL-3.0" ;
+    sc:name "AREAdata" ;
+    sc:url "https://pearselab.github.io/areadata/" ;
+    biotools:primaryContact <https://orcid.org/0000-0002-4038-9722> .
+
 <https://bio.tools/arem> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3169 ;
     sc:citation "pubmed:22035330" ;
@@ -93689,7 +80243,7 @@ Free document hosting provided by Read the Docs.""" ;
     biotools:primaryContact "Xiaohui Xie" .
 
 <https://bio.tools/arena3d> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0602 ;
@@ -93704,7 +80258,7 @@ Free document hosting provided by Read the Docs.""" ;
     sc:url "https://arena3d.org/" .
 
 <https://bio.tools/arena3dweb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:citation <https://doi.org/10.1093/nar/gkab278>,
         "pubmed:33885790" ;
     sc:description "Arena3Dweb is the first, fully interactive and dependency-free, web application which allows the visualization of multi-layered graphs in 3D space. With Arena3Dweb, users can integrate multiple networks in a single view along with their intra- and inter-layer connections. For clearer and more informative views, users can choose between a plethora of layout algorithms and apply them on a set of selected layers either individually or in combination. Users can align networks and highlight node topological features, whereas each layer as well as the whole scene can be translated, rotated and scaled in 3D space. User-selected edge colors can be used to highlight important paths, while node positioning, coloring and resizing can be adjusted on-the-fly. In its current version, Arena3Dweb supports weighted and unweighted undirected graphs, is written in R, Shiny and Javascript." ;
@@ -93713,7 +80267,7 @@ Free document hosting provided by Read the Docs.""" ;
     sc:url "http://bib.fleming.gr:3838/Arena3D/" .
 
 <https://bio.tools/ares-gt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0196,
@@ -93732,10 +80286,10 @@ Free document hosting provided by Read the Docs.""" ;
 
 <https://bio.tools/aresite> a sc:SoftwareApplication ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1274" ;
-            sc:name "Map" ;
-            sc:sameAs "http://edamontology.org/data_1274" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1274" ;
+            sc:encodingFormat "http://edamontology.org/format_3468" ;
+            sc:name "Map" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0128 ;
     sc:citation <https://doi.org/10.1093/nar/gkv1238> ;
@@ -93757,7 +80311,7 @@ Free document hosting provided by Read the Docs.""" ;
     biotools:primaryContact "Jörg Fallmann" .
 
 <https://bio.tools/arett> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3068,
@@ -93775,7 +80329,7 @@ An R package also contains analysis scripts for eye tracking data acquired using
     biotools:primaryContact <https://orcid.org/0000-0003-1052-8901> .
 
 <https://bio.tools/arf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:description "arf is a genetic analysis program for sequencing data." ;
@@ -93788,7 +80342,7 @@ An R package also contains analysis scripts for eye tracking data acquired using
     biotools:primaryContact "Arf Support" .
 
 <https://bio.tools/arg-shine> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0160,
         edam:topic_3168,
@@ -93805,8 +80359,24 @@ An R package also contains analysis scripts for eye tracking data acquired using
     sc:name "ARG-SHINE" ;
     sc:url "https://github.com/ziyewang/ARG_SHINE" .
 
+<https://bio.tools/argeos> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Bioinformatics portal" ;
+    sc:applicationSubCategory edam:topic_2640,
+        edam:topic_3170,
+        edam:topic_3308,
+        edam:topic_3518 ;
+    sc:citation <https://doi.org/10.3390/BIOLOGY10101026>,
+        "pmcid:PMC8533512",
+        "pubmed:34681124" ;
+    sc:description "ARGEOS is a bioinformatic tool for detailed systematics search in GEO and ArrayExpress. ARGEOS will allow you to carry out a systematic search for transcriptomes, collecting all the unique datasets from the most popular databases. With the web tool, you can conveniently select publicly available datasets for data reanalysis! All you need is to compose a query that will be searched. ARGEOS will let you carry out a systematic search for transcriptomes, methylation data, CHIP-seq experiments, and many others. Handy output format minimizes the need for additional information." ;
+    sc:featureList edam:operation_2421 ;
+    sc:name "ARGEOS" ;
+    sc:url "http://www.ar-geos.org" ;
+    biotools:primaryContact "Dmitry V. Chistyakov" .
+
 <https://bio.tools/argminer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0154,
@@ -93823,7 +80393,7 @@ An R package also contains analysis scripts for eye tracking data acquired using
     sc:url "https://bench.cs.vt.edu/argminer/#/home" .
 
 <https://bio.tools/argo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0204,
@@ -93845,7 +80415,7 @@ An R package also contains analysis scripts for eye tracking data acquired using
     biotools:primaryContact "Nikolay A. Kolchanov" .
 
 <https://bio.tools/argonaut> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -93864,7 +80434,7 @@ An R package also contains analysis scripts for eye tracking data acquired using
     sc:url "https://hub.docker.com/r/coonlabs/argonaut" .
 
 <https://bio.tools/argonnenatlab> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0749,
@@ -93888,7 +80458,7 @@ An R package also contains analysis scripts for eye tracking data acquired using
     biotools:primaryContact "Argonne Support" .
 
 <https://bio.tools/argot2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1371/journal.pone.0004619>,
@@ -93909,7 +80479,7 @@ An R package also contains analysis scripts for eye tracking data acquired using
     biotools:primaryContact <http://orcid.org/0000-0002-0246-3119> .
 
 <https://bio.tools/args-osp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3053,
         edam:topic_3174,
@@ -93927,7 +80497,7 @@ An R package also contains analysis scripts for eye tracking data acquired using
     sc:url "http://args-osp.herokuapp.com/" .
 
 <https://bio.tools/argslab> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3382,
         edam:topic_3524 ;
@@ -93946,7 +80516,7 @@ An R package also contains analysis scripts for eye tracking data acquired using
     sc:url "http://github.com/jimmink/argslab" .
 
 <https://bio.tools/arguslab> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0209,
         edam:topic_2275 ;
@@ -93960,7 +80530,7 @@ An R package also contains analysis scripts for eye tracking data acquired using
     sc:url "http://www.arguslab.com/arguslab.com/ArgusLab.html" .
 
 <https://bio.tools/argyle> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3168,
@@ -93979,14 +80549,13 @@ An R package also contains analysis scripts for eye tracking data acquired using
 
 <https://bio.tools/aria> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3488" ;
-            sc:name "NMR spectrum" ;
-            sc:sameAs "http://edamontology.org/data_3488" ] ;
+            sc:additionalType "http://edamontology.org/data_3488" ;
+            sc:name "NMR spectrum" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1743" ;
-            sc:name "Atomic coordinate" ;
-            sc:sameAs "http://edamontology.org/data_1743" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1743" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Atomic coordinate" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0081,
@@ -94017,7 +80586,7 @@ An R package also contains analysis scripts for eye tracking data acquired using
     biotools:primaryContact "Michael Nilges" .
 
 <https://bio.tools/ariadne> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -94039,7 +80608,7 @@ An R package also contains analysis scripts for eye tracking data acquired using
     biotools:primaryContact "Sara Nasso" .
 
 <https://bio.tools/ariadne-assembly> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
@@ -94059,18 +80628,16 @@ An R package also contains analysis scripts for eye tracking data acquired using
 
 <https://bio.tools/ariaweb> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3488" ;
-            sc:name "NMR spectrum" ;
-            sc:sameAs "http://edamontology.org/data_3488" ] ;
+            sc:additionalType "http://edamontology.org/data_3488" ;
+            sc:name "NMR spectrum" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1539" ;
-            sc:name "Protein structural quality report" ;
-            sc:sameAs "http://edamontology.org/data_1539" ],
+            sc:additionalType "http://edamontology.org/data_1539" ;
+            sc:name "Protein structural quality report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1743" ;
-            sc:name "Atomic coordinate" ;
-            sc:sameAs "http://edamontology.org/data_1743" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1743" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Atomic coordinate" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0081,
@@ -94100,7 +80667,7 @@ An R package also contains analysis scripts for eye tracking data acquired using
     biotools:primaryContact <https://orcid.org/0000-0003-4014-9195> .
 
 <https://bio.tools/aries> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3174,
@@ -94117,7 +80684,7 @@ An R package also contains analysis scripts for eye tracking data acquired using
     sc:url "https://aries.iss.it" .
 
 <https://bio.tools/arima-grnn-hybrid-model> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3305,
@@ -94137,7 +80704,7 @@ An R package also contains analysis scripts for eye tracking data acquired using
     biotools:primaryContact "Wudi Wei" .
 
 <https://bio.tools/arioc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0097,
@@ -94155,7 +80722,7 @@ An R package also contains analysis scripts for eye tracking data acquired using
     sc:url "https://github.com/RWilton/Arioc" .
 
 <https://bio.tools/arion_4_omics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3071,
         edam:topic_3360,
@@ -94177,7 +80744,7 @@ An R package also contains analysis scripts for eye tracking data acquired using
     biotools:primaryContact "Matthew Lea" .
 
 <https://bio.tools/aristo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0154,
@@ -94190,8 +80757,25 @@ An R package also contains analysis scripts for eye tracking data acquired using
     sc:name "ARISTO" ;
     sc:url "http://www.ionspectra.org/aristo" .
 
+<https://bio.tools/aristotle> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:applicationSubCategory edam:topic_0080,
+        edam:topic_0121,
+        edam:topic_0622,
+        edam:topic_3172,
+        edam:topic_3577 ;
+    sc:citation <https://doi.org/10.1186/S12859-021-04521-W>,
+        "pmcid:PMC8760642",
+        "pubmed:35033007" ;
+    sc:description "Aristotle addresses the two challenges intrinsic to omics data: high dimensionality and hidden stratification. It employs existing biological knowledge and a state-of-the-art patient stratification method to tackle the above challenges and applies a quasi-experimental design method to each stratum to find stratum-specific potential causes." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_0484,
+        edam:operation_3661 ;
+    sc:name "Aristotle" ;
+    sc:url "https://github.com/MehrdadMansouri/Aristotle" .
+
 <https://bio.tools/arkmap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0654,
@@ -94207,7 +80791,7 @@ An R package also contains analysis scripts for eye tracking data acquired using
     sc:url "http://www.bioinformatics.roslin.ed.ac.uk/arkmap/" .
 
 <https://bio.tools/arks> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3168 ;
@@ -94226,7 +80810,7 @@ An R package also contains analysis scripts for eye tracking data acquired using
     biotools:primaryContact "René L. Warren" .
 
 <https://bio.tools/arlequin> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_3056 ;
@@ -94243,7 +80827,7 @@ An R package also contains analysis scripts for eye tracking data acquired using
     sc:url "http://cmpg.unibe.ch/software/arlequin35/" .
 
 <https://bio.tools/armitages-trend-test> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3314,
@@ -94261,7 +80845,7 @@ An R package also contains analysis scripts for eye tracking data acquired using
     biotools:primaryContact "Mohammed Sadeq Al-Rawi" .
 
 <https://bio.tools/armt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0602,
@@ -94284,8 +80868,27 @@ An R package also contains analysis scripts for eye tracking data acquired using
         "Windows" ;
     sc:url "https://github.com/Dulab2020/ARMT" .
 
+<https://bio.tools/arnaque> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Script" ;
+    sc:applicationSubCategory edam:topic_0099,
+        edam:topic_0199,
+        edam:topic_3170 ;
+    sc:citation <https://doi.org/10.1186/S12859-022-04866-W>,
+        "pmcid:PMC9375295",
+        "pubmed:35964008" ;
+    sc:description "An evolutionary algorithm for inverse pseudoknotted RNA folding inspired by Lévy flights." ;
+    sc:featureList edam:operation_0278,
+        edam:operation_0483,
+        edam:operation_0570 ;
+    sc:license "GPL-3.0" ;
+    sc:name "aRNAque" ;
+    sc:operatingSystem "Mac" ;
+    sc:url "https://github.com/strevol-mpi-mis/aRNAque" .
+
 <https://bio.tools/aromtool> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0209,
@@ -94303,7 +80906,7 @@ An R package also contains analysis scripts for eye tracking data acquired using
     sc:url "https://github.com/hewg2008/AromTool" .
 
 <https://bio.tools/arothron> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2269,
@@ -94323,7 +80926,7 @@ An R package also contains analysis scripts for eye tracking data acquired using
     sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=34117635" .
 
 <https://bio.tools/arp_warp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0092,
@@ -94346,7 +80949,7 @@ An R package also contains analysis scripts for eye tracking data acquired using
     sc:url "http://www.embl-hamburg.de/ARP/" .
 
 <https://bio.tools/arpeggio> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0154,
@@ -94365,7 +80968,7 @@ An R package also contains analysis scripts for eye tracking data acquired using
     biotools:primaryContact "Jubb HC" .
 
 <https://bio.tools/arpeggio-seq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0769,
@@ -94386,7 +80989,7 @@ This folder provides the ARPEGGIO config file and the metadata file used to run
     sc:url "https://github.com/supermaxiste/ARPEGGIO" .
 
 <https://bio.tools/arpeggio-wgbs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0769,
@@ -94404,7 +81007,7 @@ This folder provides the ARPEGGIO config file and the metadata file used to run
     sc:url "https://github.com/supermaxiste/ARPEGGIO" .
 
 <https://bio.tools/arpir> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0089,
@@ -94426,7 +81029,7 @@ This folder provides the ARPEGGIO config file and the metadata file used to run
     sc:url "https://github.com/giuliospinozzi/arpir" .
 
 <https://bio.tools/array_design> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0622 ;
@@ -94439,7 +81042,7 @@ This folder provides the ARPEGGIO config file and the metadata file used to run
     sc:url "http://compbio.med.wayne.edu/software/primerDesign/index.html" .
 
 <https://bio.tools/array_suite> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0622 ;
     sc:citation <https://doi.org/10.1109/TCBB.2014.2321156> ;
@@ -94454,7 +81057,7 @@ This folder provides the ARPEGGIO config file and the metadata file used to run
     biotools:primaryContact "Support" .
 
 <https://bio.tools/arraycluster> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3277 ;
@@ -94469,7 +81072,7 @@ This folder provides the ARPEGGIO config file and the metadata file used to run
     sc:url "http://www.ism.ac.jp/~higuchi/arraycluster.htm" .
 
 <https://bio.tools/arrayexpress> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0085,
         edam:topic_0203 ;
@@ -94489,7 +81092,7 @@ This folder provides the ARPEGGIO config file and the metadata file used to run
     biotools:primaryContact "Contact Form" .
 
 <https://bio.tools/arrayexpresshts> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -94511,7 +81114,7 @@ This folder provides the ARPEGGIO config file and the metadata file used to run
         "Angela Goncalves" .
 
 <https://bio.tools/arraylasso> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0203,
@@ -94527,7 +81130,7 @@ This folder provides the ARPEGGIO config file and the metadata file used to run
     sc:url "https://github.com/adam-sam-brown/aRrayLasso" .
 
 <https://bio.tools/arraymaker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0654,
@@ -94545,7 +81148,7 @@ This folder provides the ARPEGGIO config file and the metadata file used to run
     sc:url "https://github.com/cw2014/ArrayMaker/" .
 
 <https://bio.tools/arraymap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_2259,
@@ -94566,7 +81169,7 @@ The arrayMap resource represents the part of the Progenetix project for which di
     biotools:primaryContact <https://orcid.org/0000-0002-9903-4248> .
 
 <https://bio.tools/arrayminer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0203 ;
     sc:description "ArrayMiner® is a set of analysis tools using advanced algorithms to reveal the true structure of your gene expression data. Its unique graphical interface gives you an intimate understanding of the analysis and an easy publishing of its results." ;
@@ -94580,7 +81183,7 @@ The arrayMap resource represents the part of the Progenetix project for which di
     sc:url "http://www.optimaldesign.com/ArrayMiner/ArrayMiner.htm" .
 
 <https://bio.tools/arraymvout> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0654,
@@ -94602,7 +81205,7 @@ The arrayMap resource represents the part of the Progenetix project for which di
     biotools:primaryContact "V. Carey" .
 
 <https://bio.tools/arraypipe> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0769,
@@ -94624,7 +81227,7 @@ The arrayMap resource represents the part of the Progenetix project for which di
     biotools:primaryContact "Karsten Hokamp" .
 
 <https://bio.tools/arrayprospector> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0623,
@@ -94640,7 +81243,7 @@ The arrayMap resource represents the part of the Progenetix project for which di
     sc:url "http://string32.embl-heidelberg.de:8080/prophecies_html/prophecies.html" .
 
 <https://bio.tools/arrayquality> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3518,
@@ -94659,7 +81262,7 @@ The arrayMap resource represents the part of the Progenetix project for which di
     biotools:primaryContact "Agnes Paquet" .
 
 <https://bio.tools/arrayqualitymetrics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3518,
@@ -94679,7 +81282,7 @@ The arrayMap resource represents the part of the Progenetix project for which di
     biotools:primaryContact "Audrey Kauffmann" .
 
 <https://bio.tools/arraystar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0199,
@@ -94702,14 +81305,14 @@ The arrayMap resource represents the part of the Progenetix project for which di
 
 <https://bio.tools/arraytools> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0928" ;
-            sc:name "Gene expression profile" ;
-            sc:sameAs "http://edamontology.org/data_0928" ] ;
+            sc:additionalType "http://edamontology.org/data_0928" ;
+            sc:encodingFormat "http://edamontology.org/format_2058" ;
+            sc:name "Gene expression profile" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -94728,7 +81331,7 @@ The arrayMap resource represents the part of the Progenetix project for which di
     biotools:primaryContact "Arthur Li" .
 
 <https://bio.tools/arraytrack> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0208,
@@ -94748,7 +81351,7 @@ The arrayMap resource represents the part of the Progenetix project for which di
     biotools:primaryContact "Weida Tong" .
 
 <https://bio.tools/arraytv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -94768,7 +81371,7 @@ The arrayMap resource represents the part of the Progenetix project for which di
     biotools:primaryContact "Eitan Halper-Stromberg" .
 
 <https://bio.tools/arrayxpath> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3518 ;
@@ -94787,7 +81390,7 @@ The arrayMap resource represents the part of the Progenetix project for which di
     biotools:primaryContact "Ju Han Kim" .
 
 <https://bio.tools/arrest> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_0804,
@@ -94804,7 +81407,7 @@ The arrayMap resource represents the part of the Progenetix project for which di
     sc:url "http://tools.bat.infspire.org/arrest/assignsubsets/" .
 
 <https://bio.tools/arrmnormalization> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0160,
@@ -94824,7 +81427,7 @@ The arrayMap resource represents the part of the Progenetix project for which di
     biotools:primaryContact "Jean-Philippe Fortin" .
 
 <https://bio.tools/arrp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3307 ;
@@ -94838,7 +81441,7 @@ The arrayMap resource represents the part of the Progenetix project for which di
     sc:url "https://www.ncbi.nlm.nih.gov/CBBresearch/Spouge/html_ncbi/html/software/program.html?uid=3" .
 
 <https://bio.tools/arshift> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_2275,
@@ -94855,7 +81458,7 @@ The arrayMap resource represents the part of the Progenetix project for which di
     sc:url "http://www-sidechain.ch.cam.ac.uk/ArShift/" .
 
 <https://bio.tools/art> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0091 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btr708> ;
     sc:description "ART is a set of simulation tools to generate synthetic next-generation sequencing reads. ART simulates sequencing reads by mimicking real sequencing process with empirical error models or quality profiles summarized from large recalibrated sequencing data. ART can also simulate reads using user own read error model or quality profiles. ART supports simulation of single-end, paired-end/mate-pair reads of three major commercial next-generation sequencing platforms. Illuminas Solexa, Roches 454 and Applied Biosystems SOLiD" ;
@@ -94869,7 +81472,7 @@ The arrayMap resource represents the part of the Progenetix project for which di
     sc:url "https://www.niehs.nih.gov/research/resources/software/biostatistics/art/index.cfm" .
 
 <https://bio.tools/art-net> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_3382,
         edam:topic_3421 ;
@@ -94883,7 +81486,7 @@ The arrayMap resource represents the part of the Progenetix project for which di
     sc:url "https://github.com/kamruleee51/ART-Net" .
 
 <https://bio.tools/artdeco> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0749,
@@ -94905,10 +81508,19 @@ The arrayMap resource represents the part of the Progenetix project for which di
     sc:url "https://github.com/sjroth/ARTDeco" .
 
 <https://bio.tools/artemis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0092 ;
-    sc:citation <https://doi.org/10.1093/bioinformatics/btr703> ;
+    sc:citation <https://doi.org/10.1093/bib/4.2.124>,
+        <https://doi.org/10.1093/bioinformatics/16.10.944>,
+        <https://doi.org/10.1093/bioinformatics/btn529>,
+        <https://doi.org/10.1093/bioinformatics/btr703>,
+        "pmcid:PMC2606163",
+        "pmcid:PMC3278759",
+        "pubmed:11120685",
+        "pubmed:12846394",
+        "pubmed:18845581",
+        "pubmed:22199388" ;
     sc:description "Free genome browser and annotation tool that allows visualisation of sequence features, next generation data and the results of analyses within the context of the sequence, and also its six-frame translation." ;
     sc:featureList edam:operation_3208 ;
     sc:name "Artemis" ;
@@ -94920,29 +81532,29 @@ The arrayMap resource represents the part of the Progenetix project for which di
     biotools:primaryContact "Support" .
 
 <https://bio.tools/arthropoda_assembly_assessment_catalogue> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "The Arthropoda Assembly Assessment Catalogue is a database of metadata and assembly quality metrics for all Arthropod assemblies on the NCBI" ;
     sc:name "Arthropoda Assembly Assessment Catalogue" ;
     sc:url "https://evofunvm.dcsr.unil.ch/" .
 
 <https://bio.tools/artic> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3494" ;
-            sc:name "DNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3494" ],
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:encodingFormat "http://edamontology.org/format_2182" ;
+            sc:name "DNA sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2012" ;
-            sc:name "Sequence coordinates" ;
-            sc:sameAs "http://edamontology.org/data_2012" ] ;
+            sc:additionalType "http://edamontology.org/data_2012" ;
+            sc:encodingFormat "http://edamontology.org/format_3003" ;
+            sc:name "Sequence coordinates" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1383" ;
-            sc:name "Nucleic acid sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_1383" ],
+            sc:additionalType "http://edamontology.org/data_1383" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Nucleic acid sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence variations" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622 ;
     sc:author <https://orcid.org/0000-0002-9843-8988>,
@@ -94957,8 +81569,26 @@ The arrayMap resource represents the part of the Progenetix project for which di
     sc:softwareVersion "1.1.0-rc2" ;
     sc:url "https://github.com/artic-network/fieldbioinformatics" .
 
+<https://bio.tools/artifact3-d> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Desktop application",
+        "Suite" ;
+    sc:applicationSubCategory edam:topic_0621,
+        edam:topic_0769,
+        edam:topic_3382 ;
+    sc:citation <https://doi.org/10.1371/JOURNAL.PONE.0268401>,
+        "pmcid:PMC9202890",
+        "pubmed:35709137" ;
+    sc:description "Artifact3-D offers a suite of functions for analysing 3D scans of archaeological artifacts. These functions are repeatable, objective, precise, and customizable." ;
+    sc:featureList edam:operation_0337 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "Artifact3-D" ;
+    sc:operatingSystem "Windows" ;
+    sc:url "https://sourceforge.net/projects/artifact3-d/" .
+
 <https://bio.tools/artificial-landscape-single-objective-problems> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3168,
         edam:topic_3299,
@@ -94975,7 +81605,7 @@ The arrayMap resource represents the part of the Progenetix project for which di
     biotools:primaryContact "Seyed Muhammad Hossein Mousavi" .
 
 <https://bio.tools/artistoo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3315,
@@ -94989,7 +81619,7 @@ The arrayMap resource represents the part of the Progenetix project for which di
     sc:url "https://artistoo.net/" .
 
 <https://bio.tools/arto> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622 ;
     sc:citation "pubmed:23145042" ;
@@ -95003,7 +81633,7 @@ The arrayMap resource represents the part of the Progenetix project for which di
     sc:url "http://bioinfo.cs.technion.ac.il/people/zohar/ARTO/" .
 
 <https://bio.tools/artp2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Web application" ;
     sc:applicationSubCategory edam:topic_2885,
@@ -95024,7 +81654,7 @@ The arrayMap resource represents the part of the Progenetix project for which di
         "Kai Yu" .
 
 <https://bio.tools/arts> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0199,
@@ -95044,8 +81674,28 @@ The arrayMap resource represents the part of the Progenetix project for which di
     sc:url "http://bioinfo3d.cs.tau.ac.il/ARTS/" ;
     biotools:primaryContact "ARTS team" .
 
+<https://bio.tools/arts-db> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0196,
+        edam:topic_3168,
+        edam:topic_3174,
+        edam:topic_3293,
+        edam:topic_3336 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAB940>,
+        "pmcid:PMC8728217",
+        "pubmed:34718689" ;
+    sc:description "ARTS-DB is an online repository of precomputed results of Antibiotic Resistant Target Seeker (ARTS), a rapid genome mining tool for the exploration of antibiotics with interesting and novel targets. ARTS-DB supports two main searching functionalities." ;
+    sc:featureList edam:operation_0310,
+        edam:operation_2421,
+        edam:operation_3482 ;
+    sc:name "ARTS-DB" ;
+    sc:softwareHelp <https://arts-db.ziemertlab.com/help> ;
+    sc:url "https://arts-db.ziemertlab.com/" ;
+    biotools:primaryContact <https://orcid.org/0000-0002-7264-1857> .
+
 <https://bio.tools/arts_antibiotics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0780 ;
@@ -95064,7 +81714,7 @@ The arrayMap resource represents the part of the Progenetix project for which di
     sc:url "https://arts.ziemertlab.com/" .
 
 <https://bio.tools/arts_brain> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3360,
@@ -95084,8 +81734,26 @@ The arrayMap resource represents the part of the Progenetix project for which di
         "Mac" ;
     sc:url "https://www.nitrc.org/projects/arts/" .
 
+<https://bio.tools/arvirind> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0781,
+        edam:topic_2830,
+        edam:topic_3948,
+        edam:topic_3966 ;
+    sc:author "ICMR-National Institute of Virology" ;
+    sc:citation <https://doi.org/10.22541/AU.163427612.28700439/V1> ;
+    sc:description "ArVirInd is a knowledge-base of Arbo-Viral proteins from India and its neighbourhood. his is a annotated database, which acts as a repository of Protein sequences for arbo-viruses along with antigenic information. Users can search for protein sequences by virus / protein name or by country of origin (India and countries of the Indian subcontinent: Nepal, Bhutan, Bangladesh, SriLanka, Pakistan) and year of collection (that is, the year of outbreak which defines the origin of the strain)." ;
+    sc:featureList edam:operation_0252,
+        edam:operation_0416,
+        edam:operation_2421 ;
+    sc:isAccessibleForFree true ;
+    sc:name "ArVirInd" ;
+    sc:url "http://www.arvirind.co.in" .
+
 <https://bio.tools/arx> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Library" ;
     sc:applicationSubCategory edam:topic_3063,
@@ -95109,7 +81777,7 @@ ARX is able to handle large datasets on commodity hardware and it features an in
     sc:url "https://arx.deidentifier.org/" .
 
 <https://bio.tools/as-quant> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -95127,7 +81795,7 @@ ARX is able to handle large datasets on commodity hardware and it features an in
     biotools:primaryContact <https://orcid.org/0000-0003-3605-9373> .
 
 <https://bio.tools/as2ts> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0082,
@@ -95153,7 +81821,7 @@ ARX is able to handle large datasets on commodity hardware and it features an in
     biotools:primaryContact "Adam Zemla" .
 
 <https://bio.tools/asafe> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3056,
@@ -95171,7 +81839,7 @@ ARX is able to handle large datasets on commodity hardware and it features an in
     biotools:primaryContact "Qian Zhang" .
 
 <https://bio.tools/asaim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_3168,
@@ -95191,10 +81859,10 @@ ARX is able to handle large datasets on commodity hardware and it features an in
 
 <https://bio.tools/asap> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3494" ;
-            sc:name "DNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3494" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "DNA sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application",
         "Web application" ;
@@ -95214,7 +81882,7 @@ ARX is able to handle large datasets on commodity hardware and it features an in
     biotools:primaryContact "Troels T. Marstrand" .
 
 <https://bio.tools/asap-assemble> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0196,
@@ -95236,7 +81904,7 @@ ASAP is the implementation of a hierarchical clustering algorithm that only uses
     sc:url "https://bioinfo.mnhn.fr/abi/public/asap" .
 
 <https://bio.tools/asap-sml> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0634,
@@ -95255,7 +81923,7 @@ ASAP is the implementation of a hierarchical clustering algorithm that only uses
     sc:url "https://github.com/HassounLab/ASAP-SML" .
 
 <https://bio.tools/asap_pipeline> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0099,
@@ -95274,18 +81942,18 @@ ASAP is the implementation of a hierarchical clustering algorithm that only uses
 
 <https://bio.tools/asapratio> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ] ;
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_3655" ;
+            sc:name "Peptide identification" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1669" ;
-            sc:name "P-value" ;
-            sc:sameAs "http://edamontology.org/data_1669" ],
+            sc:additionalType "http://edamontology.org/data_1669" ;
+            sc:encodingFormat "http://edamontology.org/format_3747" ;
+            sc:name "P-value" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_3747" ;
+            sc:name "Expression data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -95307,7 +81975,7 @@ ASAP is the implementation of a hierarchical clustering algorithm that only uses
     sc:url "http://tools.proteomecenter.org/ASAPRatio.php" .
 
 <https://bio.tools/asas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3382 ;
     sc:citation <https://doi.org/10.1016/j.softx.2017.07.006> ;
@@ -95323,14 +81991,12 @@ ASAP is the implementation of a hierarchical clustering algorithm that only uses
 
 <https://bio.tools/asatura> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0850" ;
-            sc:name "Sequence set" ;
-            sc:sameAs "http://edamontology.org/data_0850" ] ;
+            sc:additionalType "http://edamontology.org/data_0850" ;
+            sc:name "Sequence set" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2523" ;
-            sc:name "Phylogenetic data" ;
-            sc:sameAs "http://edamontology.org/data_2523" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2523" ;
+            sc:name "Phylogenetic data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0199 ;
     sc:citation <https://doi.org/10.1016/S0378-1119(02)00689-3>,
@@ -95347,7 +82013,7 @@ ASAP is the implementation of a hierarchical clustering algorithm that only uses
     sc:url "http://bioinformatics.psb.ugent.be/software/details/ASaturA" .
 
 <https://bio.tools/asc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2269,
@@ -95371,7 +82037,7 @@ ASAP is the implementation of a hierarchical clustering algorithm that only uses
         "Zhijin Wu" .
 
 <https://bio.tools/asc-seurat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3170,
@@ -95387,7 +82053,7 @@ ASAP is the implementation of a hierarchical clustering algorithm that only uses
     sc:url "https://github.com/KirstLab/asc_seurat/" .
 
 <https://bio.tools/ascall> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0625,
@@ -95408,7 +82074,7 @@ ASAP is the implementation of a hierarchical clustering algorithm that only uses
     sc:url "http://shtest.evrogen.net/AScall" .
 
 <https://bio.tools/ascan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3308,
@@ -95426,10 +82092,10 @@ ASAP is the implementation of a hierarchical clustering algorithm that only uses
 
 <https://bio.tools/ascat> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3110" ;
-            sc:name "Raw microarray data" ;
-            sc:sameAs "http://edamontology.org/data_3110" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3110" ;
+            sc:encodingFormat "http://edamontology.org/format_2333" ;
+            sc:name "Raw microarray data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_2640,
@@ -95449,10 +82115,10 @@ ASAP is the implementation of a hierarchical clustering algorithm that only uses
 
 <https://bio.tools/ascend> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3112" ;
-            sc:name "Gene expression matrix" ;
-            sc:sameAs "http://edamontology.org/data_3112" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3112" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Gene expression matrix" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3170 ;
@@ -95472,21 +82138,8 @@ ASAP is the implementation of a hierarchical clustering algorithm that only uses
         <https://github.com/IMB-Computational-Genomics-Lab/ascend/blob/master/vignettes/ascend-tutorial.Rmd> ;
     sc:url "https://github.com/IMB-Computational-Genomics-Lab/ascend" .
 
-<https://bio.tools/ascend_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0203,
-        edam:topic_3170 ;
-    sc:citation <https://doi.org/10.1093/GIGASCIENCE/GIZ087>,
-        "pmcid:PMC6735844",
-        "pubmed:31505654" ;
-    sc:description "> MEDIUM CONFIDENCE! | > NAME EQUAL TO (PUB. DIFFERENT) bio.tools/ascend | > CORRECT NAME OF TOOL COULD ALSO BE 'FINDINGS:ascend', 'CONCLUSIONS:ascend' | R package for analysis of single-cell RNA-seq data | Analysis of Single Cell Expression, Normalization and Differential expression | ascend (Analysis of Single Cell Expression, Normalisation and Differential expression) is a user-friendly scRNA-seq analysis toolkit implemented in R. Using pre-existing and novel methods, ascend offers quick and robust tools for quality control, normalisation, dimensionality reduction, clustering and differential expression" ;
-    sc:featureList edam:operation_3432,
-        edam:operation_3435,
-        edam:operation_3695 ;
-    sc:name "ascend_autogenerated" ;
-    sc:url "https://github.com/powellgenomicslab/ascend" .
-
 <https://bio.tools/ascent> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_0769,
@@ -95509,8 +82162,24 @@ ASAP is the implementation of a hierarchical clustering algorithm that only uses
     sc:softwareHelp <https://wmglab-duke-ascent.readthedocs.io/en/latest/> ;
     sc:url "https://github.com/wmglab-duke/ascent" .
 
+<https://bio.tools/ascovpred> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3047,
+        edam:topic_3336,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.21203/RS.3.RS-967196/V1> ;
+    sc:description "ASCoVPred is a machine learning-based platform for quantitative prediction of anti-SARS-CoV-2 activity and human cell toxicity of molecules. ASCoVPred is a collection of compounds descriptors / fingerprints (FPs) calculator tool (PaDEL v2.21) and different machine learning (ML) algorithms (implemented in Weka v3.8.2) that are used to build the ML-based quantitative structure-activity relationship (QSAR) prediction models. These QSAR models can be used for ML-assisted prediction of anti-SARS-CoV-2 activity and human cell toxicity of compounds." ;
+    sc:featureList edam:operation_3799 ;
+    sc:name "ASCoVPred" ;
+    sc:operatingSystem "Linux",
+        "Mac" ;
+    sc:softwareHelp <http://14.139.62.220/ascovpred/help.html> ;
+    sc:url "http://14.139.62.220/ascovpred/" ;
+    biotools:primaryContact <https://orcid.org/0000-0002-7548-8835> .
+
 <https://bio.tools/asd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0081,
@@ -95532,7 +82201,7 @@ ASAP is the implementation of a hierarchical clustering algorithm that only uses
         "Jian Zhang" .
 
 <https://bio.tools/asdmir> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Workbench" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -95553,7 +82222,7 @@ ASAP is the implementation of a hierarchical clustering algorithm that only uses
     sc:url "https://github.com/chenchenxiong/ASDmiR" .
 
 <https://bio.tools/aseb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3510 ;
@@ -95570,7 +82239,7 @@ ASAP is the implementation of a hierarchical clustering algorithm that only uses
     biotools:primaryContact "Likun Wang" .
 
 <https://bio.tools/asepcr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0621,
@@ -95584,7 +82253,7 @@ ASAP is the implementation of a hierarchical clustering algorithm that only uses
     sc:url "http://genome.ewha.ac.kr/ASePCR/" .
 
 <https://bio.tools/aser> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Bioinformatics portal" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0621,
@@ -95604,7 +82273,7 @@ ASAP is the implementation of a hierarchical clustering algorithm that only uses
     sc:url "http://aser.ihb.ac.cn/" .
 
 <https://bio.tools/asf-fast> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0632,
         edam:topic_3168,
@@ -95629,7 +82298,7 @@ Foreign Animal Disease Diagnostic Laboratory, National Veterinary Services Labor
     sc:url "https://github.com/rwbarrette/ASFV_MinION_RapidAssembler" .
 
 <https://bio.tools/asfold-dnn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0130,
@@ -95649,7 +82318,7 @@ Foreign Animal Disease Diagnostic Laboratory, National Veterinary Services Labor
     sc:url "https://github.com/Bioinformatics-Laboratory/project/tree/master/ASFold" .
 
 <https://bio.tools/asfp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_2275,
@@ -95665,7 +82334,7 @@ Foreign Animal Disease Diagnostic Laboratory, National Veterinary Services Labor
     sc:url "http://cadd.zju.edu.cn/asfp/" .
 
 <https://bio.tools/asfvdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Bioinformatics portal" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -95683,7 +82352,7 @@ Foreign Animal Disease Diagnostic Laboratory, National Veterinary Services Labor
     sc:url "http://asfvdb.popgenetics.net" .
 
 <https://bio.tools/asgsca> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0625,
@@ -95702,7 +82371,7 @@ Foreign Animal Disease Diagnostic Laboratory, National Veterinary Services Labor
     biotools:primaryContact "Hela Romdhani" .
 
 <https://bio.tools/ashic> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_2885,
@@ -95717,14 +82386,8 @@ Foreign Animal Disease Diagnostic Laboratory, National Veterinary Services Labor
     sc:name "ASHIC" ;
     sc:url "https://github.com/wmalab/ASHIC" .
 
-<https://bio.tools/ashika_singh> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
-    sc:description "We are Providing High-Quality Kolkata Escorts Services. if you are looking hot & Sexy Call Girls in Kolkata at a Low Price. Call +91-8420572561 to Hire Call Girls Number Sonagachi." ;
-    sc:name "Ashika Singh" ;
-    sc:url "https://www.hotgirlsecret.net" .
-
 <https://bio.tools/ashleys> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0196 ;
     sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAB221>,
@@ -95739,7 +82402,7 @@ Foreign Animal Disease Diagnostic Laboratory, National Veterinary Services Labor
     sc:url "http://github.com/friendsofstrandseq/ashleys-qc" .
 
 <https://bio.tools/asian> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0204,
@@ -95760,7 +82423,7 @@ Foreign Animal Disease Diagnostic Laboratory, National Veterinary Services Labor
     sc:url "http://eureka.cbrc.jp/asian/" .
 
 <https://bio.tools/asics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2258,
         edam:topic_3172 ;
@@ -95779,7 +82442,7 @@ Foreign Animal Disease Diagnostic Laboratory, National Veterinary Services Labor
     biotools:primaryContact "Gaëlle Lefort" .
 
 <https://bio.tools/asidesigner> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0659,
@@ -95794,7 +82457,7 @@ Foreign Animal Disease Diagnostic Laboratory, National Veterinary Services Labor
     sc:url "http://sysbio.kribb.re.kr/AsiDesigner/" .
 
 <https://bio.tools/asimulator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3170,
@@ -95814,22 +82477,22 @@ Foreign Animal Disease Diagnostic Laboratory, National Veterinary Services Labor
 
 <https://bio.tools/askomics> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2526" ;
-            sc:name "Text data" ;
-            sc:sameAs "http://edamontology.org/data_2526" ],
+            sc:additionalType "http://edamontology.org/data_2526" ;
+            sc:encodingFormat "http://edamontology.org/format_3751" ;
+            sc:name "Text data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2353" ;
-            sc:name "Ontology data" ;
-            sc:sameAs "http://edamontology.org/data_2353" ],
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:encodingFormat "http://edamontology.org/format_2305" ;
+            sc:name "Sequence features" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ] ;
+            sc:additionalType "http://edamontology.org/data_2353" ;
+            sc:encodingFormat "http://edamontology.org/format_2376" ;
+            sc:name "Ontology data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2376" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3366 ;
     sc:author "Olivier Filangi" ;
@@ -95847,7 +82510,7 @@ Foreign Animal Disease Diagnostic Laboratory, National Veterinary Services Labor
         "Olivier Dameron" .
 
 <https://bio.tools/aslive> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0621,
@@ -95867,7 +82530,7 @@ The alternative splicing in livestock animals database (ASlive.org) is a collect
     sc:url "http://ASlive.org" .
 
 <https://bio.tools/aslprep> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0219,
         edam:topic_0769,
@@ -95884,7 +82547,7 @@ The alternative splicing in livestock animals database (ASlive.org) is a collect
     sc:url "https://pennlinc.github.io/aslprep_paper" .
 
 <https://bio.tools/asltbx> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3384,
         edam:topic_3401,
         edam:topic_3444 ;
@@ -95898,7 +82561,7 @@ The alternative splicing in livestock animals database (ASlive.org) is a collect
     sc:url "https://cfn.upenn.edu/~zewang/ASLtbx.php" .
 
 <https://bio.tools/asm2ace> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196 ;
     sc:description "Cconverts the Celera ASM assembly format to the Consed ACE or the CAF file format." ;
@@ -95910,8 +82573,29 @@ The alternative splicing in livestock animals database (ASlive.org) is a collect
     sc:url "http://sourceforge.net/projects/asm2ace/" ;
     biotools:primaryContact "Support" .
 
+<https://bio.tools/asmdb> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0654,
+        edam:topic_2640,
+        edam:topic_3170,
+        edam:topic_3295,
+        edam:topic_3674 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAB937>,
+        "pmcid:PMC8728259",
+        "pubmed:34664666" ;
+    sc:description "Allele-Specific DNA Methylation Databases (ASMdb) is a comprehensive database for allele-specific DNA methylation in diverse organisms. ASMdb is aiming to provide a comprehensive resource and a web tool for showing the DNA methylation level and differential DNA methylation in diverse organisms." ;
+    sc:featureList edam:operation_3186,
+        edam:operation_3192,
+        edam:operation_3206,
+        edam:operation_3207,
+        edam:operation_3919 ;
+    sc:name "ASMdb" ;
+    sc:url "http://www.dna-asmdb.com" ;
+    biotools:primaryContact <https://orcid.org/0000-0003-1601-6640> .
+
 <https://bio.tools/asmodeler> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0203,
@@ -95928,7 +82612,7 @@ The alternative splicing in livestock animals database (ASlive.org) is a collect
     sc:url "http://genome.ewha.ac.kr/ECgene/ASmodeler/" .
 
 <https://bio.tools/asmvar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3175,
         edam:topic_3516 ;
@@ -95946,14 +82630,12 @@ The alternative splicing in livestock animals database (ASlive.org) is a collect
 
 <https://bio.tools/asp-g> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ] ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:name "Pathway or network" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:name "Pathway or network" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btu481> ;
@@ -95967,14 +82649,13 @@ The alternative splicing in livestock animals database (ASlive.org) is a collect
 
 <https://bio.tools/aspasia> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0950" ;
-            sc:name "Mathematical model" ;
-            sc:sameAs "http://edamontology.org/data_0950" ] ;
+            sc:additionalType "http://edamontology.org/data_0950" ;
+            sc:name "Mathematical model" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0950" ;
-            sc:name "Mathematical model" ;
-            sc:sameAs "http://edamontology.org/data_0950" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0950" ;
+            sc:encodingFormat "http://edamontology.org/format_2585" ;
+            sc:name "Mathematical model" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3071 ;
@@ -95989,23 +82670,30 @@ The alternative splicing in livestock animals database (ASlive.org) is a collect
     sc:url "https://www.york.ac.uk/computational-immunology/software/aspasia/" ;
     biotools:primaryContact "Kieran Alden" .
 
-<https://bio.tools/aspect-oriented> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0218,
-        edam:topic_3372,
-        edam:topic_3489 ;
-    sc:citation <https://doi.org/10.20944/PREPRINTS201909.0322.V1> ;
-    sc:description """Comparative Analysis of Compiler Performances and Program Efficiency.
-
-With the existence of several programming languages such as C C++, Java, C#, LISP, Prolog, Python, Simula, F#, Go, Haskell, Scala, Ruby, Dart, Swift, Groovy etc. and diverse paradigms like structured, object-oriented, list, aspect-oriented, service-oriented, web, mobile and logic programming, there is a need to perform an exhaustive comparative analysis of diverse compilers and environments before making a choice of implementation technology in software engineering. Optimization of compilers helps to reduce execution time by making use of high speed processor registers, thereby, eliminating redundant computation. This paper reports some series of performance analysis done with some popular programming languages including Java, C++, Python and PHP.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'Prolog', 'LISP', 'service-oriented', 'Simula'""" ;
-    sc:name "aspect-oriented" ;
-    sc:url "https://doi.org/10.20944/PREPRINTS201909.0322.V1" .
+<https://bio.tools/aspediafi> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0602,
+        edam:topic_0625,
+        edam:topic_3170,
+        edam:topic_3320,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.1016/J.GPB.2021.10.004>,
+        "pubmed:35085775" ;
+    sc:description "This package provides functionalities for a systematic and integrative analysis of alternative splicing events and their functional interactions." ;
+    sc:featureList edam:operation_0264,
+        edam:operation_2436,
+        edam:operation_3280 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "ASpediaFI" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://bioconductor.org/packages/ASpediaFI" .
 
 <https://bio.tools/aspex> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3053 ;
@@ -96019,7 +82707,7 @@ With the existence of several programming languages such as C C++, Java, C#, LIS
     biotools:primaryContact "David Hinds" .
 
 <https://bio.tools/aspgd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0797,
         edam:topic_3053,
@@ -96039,7 +82727,7 @@ With the existence of several programming languages such as C C++, Java, C#, LIS
     biotools:primaryContact "Contact Form" .
 
 <https://bio.tools/aspic> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3512 ;
     sc:citation <https://doi.org/10.1186/1471-2105-6-244> ;
@@ -96057,7 +82745,7 @@ With the existence of several programming languages such as C C++, Java, C#, LIS
         "Raffaella Rizzi" .
 
 <https://bio.tools/aspic-geneid> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3047,
         edam:topic_3308 ;
@@ -96076,38 +82764,32 @@ With the existence of several programming languages such as C C++, Java, C#, LIS
 
 <https://bio.tools/aspicdb> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0968" ;
-            sc:name "Keyword" ;
-            sc:sameAs "http://edamontology.org/data_0968" ],
+            sc:additionalType "http://edamontology.org/data_0968" ;
+            sc:name "Keyword" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0582" ;
-            sc:name "Ontology" ;
-            sc:sameAs "http://edamontology.org/data_0582" ],
+            sc:additionalType "http://edamontology.org/data_0582" ;
+            sc:name "Ontology" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1026" ;
-            sc:name "Gene symbol" ;
-            sc:sameAs "http://edamontology.org/data_1026" ],
+            sc:additionalType "http://edamontology.org/data_1026" ;
+            sc:name "Gene symbol" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0968" ;
-            sc:name "Keyword" ;
-            sc:sameAs "http://edamontology.org/data_0968" ],
+            sc:additionalType "http://edamontology.org/data_0968" ;
+            sc:name "Keyword" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1026" ;
-            sc:name "Gene symbol" ;
-            sc:sameAs "http://edamontology.org/data_1026" ],
+            sc:additionalType "http://edamontology.org/data_0582" ;
+            sc:name "Ontology" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0582" ;
-            sc:name "Ontology" ;
-            sc:sameAs "http://edamontology.org/data_0582" ] ;
+            sc:additionalType "http://edamontology.org/data_1026" ;
+            sc:name "Gene symbol" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0896" ;
-            sc:name "Protein report" ;
-            sc:sameAs "http://edamontology.org/data_0896" ],
+            sc:additionalType "http://edamontology.org/data_0896" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Protein report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3134" ;
-            sc:name "Gene transcript report" ;
-            sc:sameAs "http://edamontology.org/data_3134" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3134" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Gene transcript report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0114,
         edam:topic_3320,
@@ -96130,8 +82812,31 @@ With the existence of several programming languages such as C C++, Java, C#, LIS
     sc:url "http://srv00.recas.ba.infn.it/ASPicDB/" ;
     biotools:primaryContact <https://orcid.org/0000-0003-3663-0859> .
 
+<https://bio.tools/aspicov> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workflow" ;
+    sc:applicationSubCategory edam:topic_0199,
+        edam:topic_0769,
+        edam:topic_3168,
+        edam:topic_3174,
+        edam:topic_3308 ;
+    sc:citation <https://doi.org/10.1371/JOURNAL.PONE.0262953>,
+        "pmcid:PMC8791494",
+        "pubmed:35081137" ;
+    sc:description "An automated pipeline for identification of SARS-Cov2 nucleotidic variants." ;
+    sc:featureList edam:operation_3196,
+        edam:operation_3227,
+        edam:operation_3435 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "ASPICov" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://gitlab.com/vtilloy/aspicov" .
+
 <https://bio.tools/aspli> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3170,
@@ -96149,7 +82854,7 @@ With the existence of several programming languages such as C C++, Java, C#, LIS
     biotools:primaryContact "Estefania Mancini" .
 
 <https://bio.tools/aspli2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3170,
@@ -96163,7 +82868,7 @@ With the existence of several programming languages such as C C++, Java, C#, LIS
     sc:url "https://gitlab.com/ChernoLab/aspli2_sm" .
 
 <https://bio.tools/aspralign> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0097,
@@ -96183,7 +82888,7 @@ structures with arbitrary pseudoknots.""" ;
     sc:url "https://github.com/bdslab/aspralign" .
 
 <https://bio.tools/aspu> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3053,
         edam:topic_3517,
@@ -96201,7 +82906,7 @@ structures with arbitrary pseudoknots.""" ;
     sc:url "https://cran.r-project.org/web/packages/aSPU/" .
 
 <https://bio.tools/asreml> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_3056 ;
     sc:citation <https://doi.org/10.2307/2533274> ;
@@ -96215,7 +82920,7 @@ structures with arbitrary pseudoknots.""" ;
     sc:url "https://asreml.org/" .
 
 <https://bio.tools/assam> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0130,
@@ -96238,7 +82943,7 @@ structures with arbitrary pseudoknots.""" ;
     biotools:primaryContact "ASSAM Support" .
 
 <https://bio.tools/assaycorrector> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3393,
@@ -96255,7 +82960,7 @@ structures with arbitrary pseudoknots.""" ;
     biotools:primaryContact "Bogdan Mazoure" .
 
 <https://bio.tools/assaym> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0199,
@@ -96271,7 +82976,7 @@ structures with arbitrary pseudoknots.""" ;
     biotools:primaryContact <https://orcid.org/0000-0002-1755-2819> .
 
 <https://bio.tools/assayr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3172,
@@ -96290,14 +82995,14 @@ structures with arbitrary pseudoknots.""" ;
 
 <https://bio.tools/assemblage> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3494" ;
-            sc:name "DNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3494" ] ;
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:encodingFormat "http://edamontology.org/format_1931" ;
+            sc:name "DNA sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3494" ;
-            sc:name "DNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3494" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:encodingFormat "http://edamontology.org/format_1936" ;
+            sc:name "DNA sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196 ;
     sc:description "Assemblage is a microbial genome assembly pipeline that runs various QC, assembly and post-assembly steps on Illumina PE/SE reads. The different steps of the pipeline are - downsample reads using Seqtk/Mash (optional), clean reads with Trimmomatic, assemble clean reads with SPAdes assembler, perform post-assembly correction with PILON and annotates assembled genome using PROKKA." ;
@@ -96310,7 +83015,7 @@ structures with arbitrary pseudoknots.""" ;
     sc:url "https://github.com/alipirani88/assemblage" .
 
 <https://bio.tools/assemble2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API" ;
     sc:applicationSubCategory edam:topic_0097 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btq321> ;
@@ -96325,7 +83030,7 @@ structures with arbitrary pseudoknots.""" ;
     sc:url "http://bioinformatics.org/assemble/" .
 
 <https://bio.tools/assembline> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0611,
@@ -96346,7 +83051,7 @@ structures with arbitrary pseudoknots.""" ;
     biotools:primaryContact <https://orcid.org/0000-0002-3641-0322> .
 
 <https://bio.tools/assemblx> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0196,
@@ -96366,10 +83071,10 @@ structures with arbitrary pseudoknots.""" ;
 
 <https://bio.tools/assembly_converter> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1276" ;
-            sc:name "Nucleic acid features" ;
-            sc:sameAs "http://edamontology.org/data_1276" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1276" ;
+            sc:encodingFormat "http://edamontology.org/format_3007" ;
+            sc:name "Nucleic acid features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102 ;
     sc:citation <https://doi.org/10.1093/nar/gkv1157> ;
@@ -96388,7 +83093,7 @@ structures with arbitrary pseudoknots.""" ;
     biotools:primaryContact "Andrew Yates" .
 
 <https://bio.tools/assembly_pcr_oligo_maker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0632,
@@ -96409,14 +83114,14 @@ structures with arbitrary pseudoknots.""" ;
 
 <https://bio.tools/assemblyget> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0925" ;
-            sc:name "Sequence assembly" ;
-            sc:sameAs "http://edamontology.org/data_0925" ] ;
+            sc:additionalType "http://edamontology.org/data_0925" ;
+            sc:encodingFormat "http://edamontology.org/format_1921" ;
+            sc:name "Sequence assembly" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:encodingFormat "http://edamontology.org/format_1921" ;
+            sc:name "Sequence record" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0622 ;
@@ -96449,7 +83154,7 @@ structures with arbitrary pseudoknots.""" ;
     sc:url "http://www.bioinformatics.nl/cgi-bin/emboss/assemblyget" .
 
 <https://bio.tools/assemblymanager> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3173,
@@ -96465,7 +83170,7 @@ structures with arbitrary pseudoknots.""" ;
     sc:url "http://andersonlab.qb3.berkeley.edu/#/software" .
 
 <https://bio.tools/asseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0102,
@@ -96485,14 +83190,14 @@ structures with arbitrary pseudoknots.""" ;
 
 <https://bio.tools/asset> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0920" ;
-            sc:name "Genotype/phenotype report" ;
-            sc:sameAs "http://edamontology.org/data_0920" ] ;
+            sc:additionalType "http://edamontology.org/data_0920" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Genotype/phenotype report" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1669" ;
-            sc:name "P-value" ;
-            sc:sameAs "http://edamontology.org/data_1669" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1669" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "P-value" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2269,
@@ -96513,22 +83218,22 @@ structures with arbitrary pseudoknots.""" ;
 
 <https://bio.tools/assign> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ],
+            sc:additionalType "http://edamontology.org/data_3112" ;
+            sc:encodingFormat "http://edamontology.org/format_2058" ;
+            sc:name "Gene expression matrix" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3112" ;
-            sc:name "Gene expression matrix" ;
-            sc:sameAs "http://edamontology.org/data_3112" ] ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:encodingFormat "http://edamontology.org/format_2058" ;
+            sc:name "Pathway or network" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1772" ;
-            sc:name "Score" ;
-            sc:sameAs "http://edamontology.org/data_1772" ],
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Pathway or network" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1772" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Score" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0602,
@@ -96547,7 +83252,7 @@ structures with arbitrary pseudoknots.""" ;
     biotools:primaryContact "Ying Shen" .
 
 <https://bio.tools/assignment_of_dna_and_rna_conformers> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description """Assignment of DNA and RNA conformers
 
 A unified dinucleotide alphabet describing both RNA and DNA structures by Černý et al., was published in Nucleic Acids Research, Vol 48, pages 63667-6381 (2020).
@@ -96559,7 +83264,7 @@ The web service in version 2 is described in Černý et al., Nucleic Acids Resea
     sc:url "https://www.dnatco.org/" .
 
 <https://bio.tools/assist> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_2885,
         edam:topic_3053 ;
@@ -96579,7 +83284,7 @@ The web service in version 2 is described in Černý et al., Nucleic Acids Resea
     biotools:primaryContact "Diego Micheletti" .
 
 <https://bio.tools/assist_active> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btt664> ;
@@ -96593,7 +83298,7 @@ The web service in version 2 is described in Černý et al., Nucleic Acids Resea
     sc:url "http://www.computationalbiology.it/software.html" .
 
 <https://bio.tools/association_viewer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0622 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btp017> ;
@@ -96608,7 +83313,7 @@ The web service in version 2 is described in Černý et al., Nucleic Acids Resea
     biotools:primaryContact "Olivier Martin" .
 
 <https://bio.tools/assp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_3542 ;
@@ -96625,14 +83330,13 @@ The web service in version 2 is described in Černý et al., Nucleic Acids Resea
 
 <https://bio.tools/astalavista> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1276" ;
-            sc:name "Nucleic acid features" ;
-            sc:sameAs "http://edamontology.org/data_1276" ] ;
+            sc:additionalType "http://edamontology.org/data_1276" ;
+            sc:name "Nucleic acid features" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Sequence features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0097 ;
     sc:author "Micha Sammeth" ;
@@ -96654,7 +83358,7 @@ The web service in version 2 is described in Černý et al., Nucleic Acids Resea
     biotools:primaryContact "Micha Sammeth" .
 
 <https://bio.tools/astarix> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1101/2020.01.22.915496> ;
@@ -96670,138 +83374,120 @@ The web service in version 2 is described in Černý et al., Nucleic Acids Resea
 
 <https://bio.tools/astd> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2367" ;
-            sc:name "ASTD ID" ;
-            sc:sameAs "http://edamontology.org/data_2367" ],
+            sc:additionalType "http://edamontology.org/data_2371" ;
+            sc:name "ASTD ID (tss)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2367" ;
-            sc:name "ASTD ID" ;
-            sc:sameAs "http://edamontology.org/data_2367" ],
+            sc:additionalType "http://edamontology.org/data_2398" ;
+            sc:name "Ensembl protein ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2367" ;
-            sc:name "ASTD ID" ;
-            sc:sameAs "http://edamontology.org/data_2367" ],
+            sc:additionalType "http://edamontology.org/data_1033" ;
+            sc:name "Ensembl gene ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2368" ;
-            sc:name "ASTD ID (exon)" ;
-            sc:sameAs "http://edamontology.org/data_2368" ],
+            sc:additionalType "http://edamontology.org/data_1033" ;
+            sc:name "Ensembl gene ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2367" ;
-            sc:name "ASTD ID" ;
-            sc:sameAs "http://edamontology.org/data_2367" ],
+            sc:additionalType "http://edamontology.org/data_1033" ;
+            sc:name "Ensembl gene ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2398" ;
-            sc:name "Ensembl protein ID" ;
-            sc:sameAs "http://edamontology.org/data_2398" ],
+            sc:additionalType "http://edamontology.org/data_2367" ;
+            sc:name "ASTD ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2367" ;
-            sc:name "ASTD ID" ;
-            sc:sameAs "http://edamontology.org/data_2367" ],
+            sc:additionalType "http://edamontology.org/data_2367" ;
+            sc:name "ASTD ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2371" ;
-            sc:name "ASTD ID (tss)" ;
-            sc:sameAs "http://edamontology.org/data_2371" ],
+            sc:additionalType "http://edamontology.org/data_1033" ;
+            sc:name "Ensembl gene ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1033" ;
-            sc:name "Ensembl gene ID" ;
-            sc:sameAs "http://edamontology.org/data_1033" ],
+            sc:additionalType "http://edamontology.org/data_2367" ;
+            sc:name "ASTD ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1033" ;
-            sc:name "Ensembl gene ID" ;
-            sc:sameAs "http://edamontology.org/data_1033" ],
+            sc:additionalType "http://edamontology.org/data_2370" ;
+            sc:name "ASTD ID (polya)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2370" ;
-            sc:name "ASTD ID (polya)" ;
-            sc:sameAs "http://edamontology.org/data_2370" ],
+            sc:additionalType "http://edamontology.org/data_2369" ;
+            sc:name "ASTD ID (intron)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2369" ;
-            sc:name "ASTD ID (intron)" ;
-            sc:sameAs "http://edamontology.org/data_2369" ],
+            sc:additionalType "http://edamontology.org/data_2367" ;
+            sc:name "ASTD ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2398" ;
-            sc:name "Ensembl protein ID" ;
-            sc:sameAs "http://edamontology.org/data_2398" ],
+            sc:additionalType "http://edamontology.org/data_2367" ;
+            sc:name "ASTD ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1033" ;
-            sc:name "Ensembl gene ID" ;
-            sc:sameAs "http://edamontology.org/data_1033" ],
+            sc:additionalType "http://edamontology.org/data_1033" ;
+            sc:name "Ensembl gene ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2367" ;
-            sc:name "ASTD ID" ;
-            sc:sameAs "http://edamontology.org/data_2367" ],
+            sc:additionalType "http://edamontology.org/data_2367" ;
+            sc:name "ASTD ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2367" ;
-            sc:name "ASTD ID" ;
-            sc:sameAs "http://edamontology.org/data_2367" ],
+            sc:additionalType "http://edamontology.org/data_2368" ;
+            sc:name "ASTD ID (exon)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1033" ;
-            sc:name "Ensembl gene ID" ;
-            sc:sameAs "http://edamontology.org/data_1033" ],
+            sc:additionalType "http://edamontology.org/data_2367" ;
+            sc:name "ASTD ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1033" ;
-            sc:name "Ensembl gene ID" ;
-            sc:sameAs "http://edamontology.org/data_1033" ] ;
+            sc:additionalType "http://edamontology.org/data_2398" ;
+            sc:name "Ensembl protein ID" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1276" ;
-            sc:name "Nucleic acid features" ;
-            sc:sameAs "http://edamontology.org/data_1276" ],
+            sc:additionalType "http://edamontology.org/data_3134" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Gene transcript report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1276" ;
-            sc:name "Nucleic acid features" ;
-            sc:sameAs "http://edamontology.org/data_1276" ],
+            sc:additionalType "http://edamontology.org/data_3134" ;
+            sc:encodingFormat "http://edamontology.org/format_1927" ;
+            sc:name "Gene transcript report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3134" ;
-            sc:name "Gene transcript report" ;
-            sc:sameAs "http://edamontology.org/data_3134" ],
+            sc:additionalType "http://edamontology.org/data_1276" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Nucleic acid features" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3134" ;
-            sc:name "Gene transcript report" ;
-            sc:sameAs "http://edamontology.org/data_3134" ],
+            sc:additionalType "http://edamontology.org/data_3134" ;
+            sc:encodingFormat "http://edamontology.org/format_2305" ;
+            sc:name "Gene transcript report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1276" ;
-            sc:name "Nucleic acid features" ;
-            sc:sameAs "http://edamontology.org/data_1276" ],
+            sc:additionalType "http://edamontology.org/data_1276" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Nucleic acid features" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0896" ;
-            sc:name "Protein report" ;
-            sc:sameAs "http://edamontology.org/data_0896" ],
+            sc:additionalType "http://edamontology.org/data_1276" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Nucleic acid features" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0916" ;
-            sc:name "Gene report" ;
-            sc:sameAs "http://edamontology.org/data_0916" ],
+            sc:additionalType "http://edamontology.org/data_0916" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Gene report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3134" ;
-            sc:name "Gene transcript report" ;
-            sc:sameAs "http://edamontology.org/data_3134" ],
+            sc:additionalType "http://edamontology.org/data_0896" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Protein report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0916" ;
-            sc:name "Gene report" ;
-            sc:sameAs "http://edamontology.org/data_0916" ],
+            sc:additionalType "http://edamontology.org/data_0916" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Gene report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3134" ;
-            sc:name "Gene transcript report" ;
-            sc:sameAs "http://edamontology.org/data_3134" ],
+            sc:additionalType "http://edamontology.org/data_1276" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Nucleic acid features" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0916" ;
-            sc:name "Gene report" ;
-            sc:sameAs "http://edamontology.org/data_0916" ],
+            sc:additionalType "http://edamontology.org/data_0916" ;
+            sc:encodingFormat "http://edamontology.org/format_1927" ;
+            sc:name "Gene report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0896" ;
-            sc:name "Protein report" ;
-            sc:sameAs "http://edamontology.org/data_0896" ],
+            sc:additionalType "http://edamontology.org/data_0916" ;
+            sc:encodingFormat "http://edamontology.org/format_2306" ;
+            sc:name "Gene report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0916" ;
-            sc:name "Gene report" ;
-            sc:sameAs "http://edamontology.org/data_0916" ],
+            sc:additionalType "http://edamontology.org/data_0916" ;
+            sc:encodingFormat "http://edamontology.org/format_2305" ;
+            sc:name "Gene report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1276" ;
-            sc:name "Nucleic acid features" ;
-            sc:sameAs "http://edamontology.org/data_1276" ],
+            sc:additionalType "http://edamontology.org/data_3134" ;
+            sc:encodingFormat "http://edamontology.org/format_2306" ;
+            sc:name "Gene transcript report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0916" ;
-            sc:name "Gene report" ;
-            sc:sameAs "http://edamontology.org/data_0916" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0896" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0114 ;
     sc:citation <https://doi.org/10.1093/nar/gkv1352> ;
@@ -96816,7 +83502,7 @@ The web service in version 2 is described in Černý et al., Nucleic Acids Resea
     biotools:primaryContact "Contact List" .
 
 <https://bio.tools/asterias> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3168,
@@ -96831,8 +83517,34 @@ The web service in version 2 is described in Černý et al., Nucleic Acids Resea
     sc:name "Asterias" ;
     sc:url "http://asterias.bioinfo.cnio.es/" .
 
+<https://bio.tools/asterics> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Expression data" ] ;
+    bsc:output [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Bioinformatics portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_2269,
+        edam:topic_3391 ;
+    sc:description "A Tool for the ExploRation and Integration of omiCS" ;
+    sc:featureList edam:operation_3438 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "ASTERICS" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://asterics.pages.mia.inra.fr/user_documentation/> ;
+    sc:softwareVersion "2.1" ;
+    sc:url "https://asterics.miat.inrae.fr/" ;
+    biotools:primaryContact <https://orcid.org/0000-0003-1156-0639> .
+
 <https://bio.tools/astherisc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0821,
         edam:topic_3172,
@@ -96853,8 +83565,27 @@ The web service in version 2 is described in Černý et al., Nucleic Acids Resea
         "Windows" ;
     sc:url "https://github.com/klamt-lab/astheriscPackage" .
 
+<https://bio.tools/asthmakgxe> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0208,
+        edam:topic_0218,
+        edam:topic_3390,
+        edam:topic_3473,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1016/J.COMPBIOMED.2022.105933>,
+        "pubmed:35963184" ;
+    sc:description "An asthma-environment interaction knowledge graph leveraging public databases and scientific literature." ;
+    sc:featureList edam:operation_3349 ;
+    sc:license "Not licensed" ;
+    sc:name "AsthmaKGxE" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://asthmakgxe.moreair.info/" .
+
 <https://bio.tools/astir> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3382,
@@ -96870,7 +83601,7 @@ The web service in version 2 is described in Černý et al., Nucleic Acids Resea
     sc:url "https://www.github.com/camlab-bioml/astir" .
 
 <https://bio.tools/astra> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_2640,
@@ -96883,12 +83614,18 @@ The web service in version 2 is described in Černý et al., Nucleic Acids Resea
     sc:url "https://github.com/AISKhalil/AStra" .
 
 <https://bio.tools/astral> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3293,
         edam:topic_3321 ;
-    sc:citation "pubmed:26072508" ;
+    sc:citation <https://doi.org/10.1093/bioinformatics/btu462>,
+        <https://doi.org/10.1186/s12859-018-2129-y>,
+        "pmcid:PMC4147915",
+        "pmcid:PMC5998893",
+        "pubmed:25161245",
+        "pubmed:26072508",
+        "pubmed:29745866" ;
     sc:description "Java program for estimating a species tree given a set of unrooted gene trees." ;
     sc:featureList edam:operation_0323 ;
     sc:name "ASTRAL" ;
@@ -96900,7 +83637,7 @@ The web service in version 2 is described in Černý et al., Nucleic Acids Resea
     biotools:primaryContact "Siavash Mirarab" .
 
 <https://bio.tools/astro> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3053 ;
@@ -96913,8 +83650,32 @@ The web service in version 2 is described in Černý et al., Nucleic Acids Resea
     biotools:primaryContact "Alain Tchagang",
         "Takis Benos" .
 
+<https://bio.tools/asurat> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library",
+        "Workflow" ;
+    sc:applicationSubCategory edam:topic_0602,
+        edam:topic_0634,
+        edam:topic_2640,
+        edam:topic_3170,
+        edam:topic_3308 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC541>,
+        "pmcid:PMC9477531",
+        "pubmed:35924984" ;
+    sc:description "ASURAT is a software for single-cell data analysis. Using ASURAT, one can simultaneously perform unsupervised clustering and biological interpretation in terms of cell type, disease, biological process, and signaling pathway activity." ;
+    sc:featureList edam:operation_2436,
+        edam:operation_3432,
+        edam:operation_3891 ;
+    sc:license "GPL-3.0" ;
+    sc:name "ASURAT" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareVersion "1.0.0" ;
+    sc:url "https://www.bioconductor.org/packages/release/bioc/html/ASURAT.html" .
+
 <https://bio.tools/asymmetron> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0621,
@@ -96934,7 +83695,7 @@ The web service in version 2 is described in Černý et al., Nucleic Acids Resea
     sc:url "https://github.com/Ahituv-lab/Asymmetron" .
 
 <https://bio.tools/asymmetry> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0797,
@@ -96951,7 +83712,7 @@ AsymmetryScaler takes the results from AsymmetryCounter and summarizes substitut
     biotools:primaryContact "McDonald, J.H" .
 
 <https://bio.tools/atac> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0102,
@@ -96968,14 +83729,8 @@ AsymmetryScaler takes the results from AsymmetryCounter and summarizes substitut
     biotools:primaryContact "Brian Walenz",
         "Liliana Florea" .
 
-<https://bio.tools/atac_seq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
-    sc:description "By advantage of the cutting-edge Illumina platform and widely accepted analysis software, CD Genomics provides a comprehensive solution for your needs to investigate whether epigenetics plays a role in the response of your cell system." ;
-    sc:name "ATAC Seq" ;
-    sc:url "https://www.cd-genomics.com/atac-seq.html" .
-
 <https://bio.tools/atacdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_2885,
@@ -96992,7 +83747,7 @@ AsymmetryScaler takes the results from AsymmetryCounter and summarizes substitut
     sc:url "http://www.licpathway.net/ATACdb" .
 
 <https://bio.tools/atacgraph> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_3169,
@@ -97011,7 +83766,7 @@ AsymmetryScaler takes the results from AsymmetryCounter and summarizes substitut
     sc:url "https://github.com/RitataLU/ATACgraph" .
 
 <https://bio.tools/atacseqqc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3168,
@@ -97029,8 +83784,32 @@ AsymmetryScaler takes the results from AsymmetryCounter and summarizes substitut
     sc:url "http://bioconductor.org/packages/release/bioc/html/ATACseqQC.html" ;
     biotools:primaryContact "Jianhong Ou" .
 
+<https://bio.tools/atap> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0196,
+        edam:topic_0610,
+        edam:topic_0769,
+        edam:topic_3170,
+        edam:topic_3308 ;
+    sc:citation <https://doi.org/10.1016/J.HELIYON.2022.E10255>,
+        "pmcid:PMC9404342",
+        "pubmed:36033257" ;
+    sc:description "aTAP is a comprehensive bioinformatics web-based platform for analyze RNA-Seq data." ;
+    sc:featureList edam:operation_0524,
+        edam:operation_3192,
+        edam:operation_3223,
+        edam:operation_3258,
+        edam:operation_3800 ;
+    sc:isAccessibleForFree true ;
+    sc:name "aTAP" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://atap.psu.ac.th/" .
+
 <https://bio.tools/ataqv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Suite" ;
     sc:applicationSubCategory edam:topic_0091,
@@ -97050,7 +83829,7 @@ AsymmetryScaler takes the results from AsymmetryCounter and summarizes substitut
     sc:url "https://github.com/ParkerLab/ataqv/" .
 
 <https://bio.tools/ataris> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0204,
@@ -97069,7 +83848,7 @@ AsymmetryScaler takes the results from AsymmetryCounter and summarizes substitut
     biotools:primaryContact "Aviad Tsherniak (Broad Institute)" .
 
 <https://bio.tools/atav> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web API" ;
     sc:applicationSubCategory edam:topic_0102,
@@ -97089,7 +83868,7 @@ ATAV stores variant and per site coverage data for all samples in a centralized
     sc:url "http://atavdb.org/" .
 
 <https://bio.tools/atb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0153,
         edam:topic_0154,
@@ -97107,14 +83886,13 @@ ATAV stores variant and per site coverage data for all samples in a centralized
 
 <https://bio.tools/atcc> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0842" ;
-            sc:name "Identifier" ;
-            sc:sameAs "http://edamontology.org/data_0842" ] ;
+            sc:additionalType "http://edamontology.org/data_0842" ;
+            sc:name "Identifier" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0963" ;
-            sc:name "Cell line report" ;
-            sc:sameAs "http://edamontology.org/data_0963" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0963" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Cell line report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_2229 ;
     sc:description "Global biological materials resource and standards organization whose mission focuses on the acquisition, authentication, production, preservation, development, and distribution of standard reference microorganisms, cell lines, and other materials." ;
@@ -97129,14 +83907,12 @@ ATAV stores variant and per site coverage data for all samples in a centralized
 
 <https://bio.tools/atcoecis> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0842" ;
-            sc:name "Identifier" ;
-            sc:sameAs "http://edamontology.org/data_0842" ] ;
+            sc:additionalType "http://edamontology.org/data_0842" ;
+            sc:name "Identifier" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1097" ;
-            sc:name "Sequence accession (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1097" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1097" ;
+            sc:name "Sequence accession (nucleic acid)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0160 ;
     sc:citation <https://doi.org/10.1104/pp.109.136028> ;
@@ -97155,7 +83931,7 @@ ATAV stores variant and per site coverage data for all samples in a centralized
     biotools:primaryContact "Klaas Vandepoele" .
 
 <https://bio.tools/atdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0601,
         edam:topic_0602,
@@ -97173,7 +83949,7 @@ ATAV stores variant and per site coverage data for all samples in a centralized
     sc:url "http://www.bigzju.com/ATdb/#/" .
 
 <https://bio.tools/atgme> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0654 ;
@@ -97187,8 +83963,30 @@ ATAV stores variant and per site coverage data for all samples in a centralized
     sc:softwareHelp <http://atgme.org/> ;
     sc:url "http://atgme.org/" .
 
+<https://bio.tools/atgpred-fl> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0121,
+        edam:topic_0154,
+        edam:topic_2269,
+        edam:topic_3299,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1007/S00726-022-03145-5>,
+        "pubmed:35286461" ;
+    sc:description "Sequence-based prediction of autophagy proteins with feature representation learning." ;
+    sc:featureList edam:operation_3092,
+        edam:operation_3767,
+        edam:operation_3936 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "ATGPred-FL" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://lab.malab.cn/~acy/ATGPred-FL" .
+
 <https://bio.tools/athamap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0203,
@@ -97210,8 +84008,29 @@ ATAV stores variant and per site coverage data for all samples in a centralized
     sc:url "http://www.athamap.de/" ;
     biotools:primaryContact "Artyom Romanov (Webmaster)" .
 
+<https://bio.tools/athena> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workbench" ;
+    sc:applicationSubCategory edam:topic_0121,
+        edam:topic_2640,
+        edam:topic_3308,
+        edam:topic_3382,
+        edam:topic_3934 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC303>,
+        "pmcid:PMC9154280",
+        "pubmed:35485743" ;
+    sc:description "ATHENA is an open-source computational framework written in Python that facilitates the visualization, processing and analysis of (spatial) heterogeneity from spatial omics data." ;
+    sc:isAccessibleForFree true ;
+    sc:license "BSD-3-Clause" ;
+    sc:name "ATHENA" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://ai4scr.github.io/ATHENA/> ;
+    sc:url "https://github.com/AI4SCR/ATHENA" .
+
 <https://bio.tools/ativs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0602,
@@ -97232,7 +84051,7 @@ ATAV stores variant and per site coverage data for all samples in a centralized
     biotools:primaryContact "ATIVS Suppport" .
 
 <https://bio.tools/atlantic> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -97253,7 +84072,7 @@ Integrated analysis of genomes, transcriptomes, proteomes and drug responses of
     sc:url "http://atlantic.proteomics.wzw.tum.de/" .
 
 <https://bio.tools/atlas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0622,
@@ -97268,7 +84087,7 @@ Integrated analysis of genomes, transcriptomes, proteomes and drug responses of
     sc:url "https://www.hgsc.bcm.edu/software/atlas-whole-genome-assembly-suite" .
 
 <https://bio.tools/atlas-genome> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3174,
         edam:topic_3308,
         edam:topic_3517 ;
@@ -97284,7 +84103,7 @@ Integrated analysis of genomes, transcriptomes, proteomes and drug responses of
     sc:url "https://atlas.ctglab.nl" .
 
 <https://bio.tools/atlas-modeling> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0602,
         edam:topic_0749,
@@ -97300,7 +84119,7 @@ Integrated analysis of genomes, transcriptomes, proteomes and drug responses of
     sc:url "https://github.com/networkbiolab/atlas" .
 
 <https://bio.tools/atlas-snp2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2885 ;
     sc:citation "pubmed:20019143" ;
@@ -97313,7 +84132,7 @@ Integrated analysis of genomes, transcriptomes, proteomes and drug responses of
     biotools:primaryContact "Fuli Yu" .
 
 <https://bio.tools/atlas2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0654,
@@ -97331,7 +84150,7 @@ Integrated analysis of genomes, transcriptomes, proteomes and drug responses of
     biotools:primaryContact "Fuli Yu, Ph.D." .
 
 <https://bio.tools/atlasBREX> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3384,
         edam:topic_3444,
         edam:topic_3500 ;
@@ -97346,7 +84165,7 @@ Integrated analysis of genomes, transcriptomes, proteomes and drug responses of
     sc:url "https://www.github.com/jlohmeier/atlasBREX" .
 
 <https://bio.tools/atlas_gapfill> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0622,
@@ -97360,7 +84179,7 @@ Integrated analysis of genomes, transcriptomes, proteomes and drug responses of
     sc:url "https://www.hgsc.bcm.edu/software/atlas-gapfill" .
 
 <https://bio.tools/atlas_suite> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_2885,
@@ -97377,7 +84196,7 @@ Integrated analysis of genomes, transcriptomes, proteomes and drug responses of
     biotools:primaryContact "Fuli Yu" .
 
 <https://bio.tools/atlases_rat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0611,
         edam:topic_3304,
         edam:topic_3384 ;
@@ -97389,14 +84208,13 @@ Integrated analysis of genomes, transcriptomes, proteomes and drug responses of
 
 <https://bio.tools/atlasgeneticsoncology> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2080" ;
-            sc:name "Database search results" ;
-            sc:sameAs "http://edamontology.org/data_2080" ] ;
+            sc:additionalType "http://edamontology.org/data_2080" ;
+            sc:name "Database search results" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0971" ;
-            sc:name "Article" ;
-            sc:sameAs "http://edamontology.org/data_0971" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0971" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Article" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3303 ;
@@ -97421,7 +84239,7 @@ Integrated analysis of genomes, transcriptomes, proteomes and drug responses of
         "Philippe Dessen" .
 
 <https://bio.tools/atlasrdf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -97441,7 +84259,7 @@ Integrated analysis of genomes, transcriptomes, proteomes and drug responses of
     biotools:primaryContact "Simon Jupp" .
 
 <https://bio.tools/atlasx> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0602,
@@ -97457,7 +84275,7 @@ Integrated analysis of genomes, transcriptomes, proteomes and drug responses of
     sc:url "https://lcsb-databases.epfl.ch/Atlas2" .
 
 <https://bio.tools/atmad> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0780,
@@ -97476,8 +84294,33 @@ Integrated analysis of genomes, transcriptomes, proteomes and drug responses of
     sc:name "AtMAD" ;
     sc:url "http://119.3.41.228:8080/atmad/" .
 
+<https://bio.tools/atoll> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0108,
+        edam:topic_0153,
+        edam:topic_0736,
+        edam:topic_0749,
+        edam:topic_0820 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAB860>,
+        "pubmed:34954796" ;
+    sc:description "ATOLL (Aligned Transmembrane dOmain Layout fLattening) is a program for visualizing 3D structures of the transmembrane helix bundle of membrane proteins." ;
+    sc:featureList edam:operation_0244,
+        edam:operation_0269,
+        edam:operation_2241,
+        edam:operation_2476,
+        edam:operation_2487 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-2.0" ;
+    sc:name "ATOLL" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://atoll.drugdesign.unistra.fr/" .
+
 <https://bio.tools/atomap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0611,
         edam:topic_1317,
@@ -97500,43 +84343,51 @@ Integrated analysis of genomes, transcriptomes, proteomes and drug responses of
     biotools:primaryContact <http://orcid.org/0000-0001-7981-5293> .
 
 <https://bio.tools/atomic-charge-calculator-ii> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
-    sc:additionalType "Web application" ;
-    sc:applicationSubCategory edam:topic_2258,
-        edam:topic_2275,
-        edam:topic_3047,
-        edam:topic_3068,
-        edam:topic_3332 ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1463" ;
+            sc:encodingFormat "http://edamontology.org/format_1477" ;
+            sc:name "Small molecule structure" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1477" ;
+            sc:name "Protein structure" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Web API",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_3332 ;
+    sc:author <https://orcid.org/0000-0002-0296-2452> ;
     sc:citation <https://doi.org/10.1093/NAR/GKAA367>,
         "pmcid:PMC7319571",
         "pubmed:32402071" ;
     sc:description "Atomic Charge Calculator II (ACC II) is a web application for fast calculation of partial atomic charges." ;
-    sc:featureList edam:operation_0337,
-        edam:operation_3893,
-        edam:operation_3938 ;
+    sc:featureList edam:operation_3438 ;
+    sc:isAccessibleForFree true ;
     sc:license "MIT" ;
     sc:name "Atomic Charge Calculator II" ;
+    sc:provider <https://orcid.org/0000-0002-3840-8760> ;
     sc:softwareHelp <https://acc2.ncbr.muni.cz/static/manual.pdf> ;
-    sc:url "https://acc2.ncbr.muni.cz" .
+    sc:softwareVersion "2" ;
+    sc:url "https://acc2.ncbr.muni.cz" ;
+    biotools:primaryContact <https://orcid.org/0000-0002-0296-2452> .
 
 <https://bio.tools/atomicchargecalculator> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ],
+            sc:additionalType "http://edamontology.org/data_1463" ;
+            sc:name "Small molecule structure" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1463" ;
-            sc:name "Small molecule structure" ;
-            sc:sameAs "http://edamontology.org/data_1463" ] ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1477" ;
+            sc:name "Protein structure" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1917" ;
-            sc:name "Atomic property" ;
-            sc:sameAs "http://edamontology.org/data_1917" ],
+            sc:additionalType "http://edamontology.org/data_2085" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Structure report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2085" ;
-            sc:name "Structure report" ;
-            sc:sameAs "http://edamontology.org/data_2085" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1917" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Atomic property" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0081,
@@ -97567,7 +84418,7 @@ Integrated analysis of genomes, transcriptomes, proteomes and drug responses of
         "Primary Contact" .
 
 <https://bio.tools/atomium> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0593 ;
@@ -97583,7 +84434,7 @@ Integrated analysis of genomes, transcriptomes, proteomes and drug responses of
     sc:url "https://atomium.samireland.com/" .
 
 <https://bio.tools/atpdock> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2275,
         edam:topic_2830,
@@ -97601,7 +84452,7 @@ Integrated analysis of genomes, transcriptomes, proteomes and drug responses of
     sc:url "https://jun-csbio.github.io/atpdock/" .
 
 <https://bio.tools/atpid> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0121,
@@ -97622,8 +84473,18 @@ Integrated analysis of genomes, transcriptomes, proteomes and drug responses of
     sc:softwareHelp <http://www.megabionet.org/atpid/webfile/faq_help.php> ;
     sc:url "http://www.megabionet.org/atpid/" .
 
+<https://bio.tools/atpint> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:description "ATPint:is a web based tool for prediction of ATP binding residue in protein sequence" ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "atpint" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/atpint/index.html> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/atpint/index.html" .
+
 <https://bio.tools/atram> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3168 ;
@@ -97641,7 +84502,7 @@ Integrated analysis of genomes, transcriptomes, proteomes and drug responses of
     sc:url "https://github.com/juliema/aTRAM" .
 
 <https://bio.tools/atrhunter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0157,
@@ -97658,7 +84519,7 @@ Integrated analysis of genomes, transcriptomes, proteomes and drug responses of
     sc:url "http://www.cs.technion.ac.il/labs/cbl/atrhunter/ATRinformation.htm" .
 
 <https://bio.tools/atria> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0196,
@@ -97675,8 +84536,63 @@ Integrated analysis of genomes, transcriptomes, proteomes and drug responses of
     sc:name "Atria" ;
     sc:url "https://github.com/cihga39871/Atria" .
 
+<https://bio.tools/atrialjsqnet> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workbench" ;
+    sc:applicationSubCategory edam:topic_3444 ;
+    sc:citation <https://doi.org/10.1016/J.MEDIA.2021.102303>,
+        "pubmed:34875581" ;
+    sc:description "AtrialJSQnet is a modified U-Net consisting of two decoders for LA segmentation and scar quantification, respectively." ;
+    sc:featureList edam:operation_3799 ;
+    sc:isAccessibleForFree true ;
+    sc:name "AtrialJSQnet" ;
+    sc:operatingSystem "Linux" ;
+    sc:url "https://github.com/Marie0909/AtrialJSQnet" .
+
+<https://bio.tools/atriu> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Workflow" ;
+    sc:applicationSubCategory edam:topic_0593,
+        edam:topic_0769,
+        edam:topic_3384,
+        edam:topic_3444,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1186/S12968-021-00791-8>,
+        "pmcid:PMC8582149",
+        "pubmed:34758821" ;
+    sc:description "Atri-U is a tool for assisted image analysis in routine cardiovascular magnetic resonance volumetry of the left atrium. Atri-U is an automated data analysis pipeline for long-axis cardiac cine images, computes the atrial volume by: (i) detecting the end-systolic frame, (ii) outlining the endocardial borders of the LA, (iii) localizing the mitral annular hinge points and constructing the longitudinal atrial diameters, equivalent to the usual workup done by clinicians." ;
+    sc:featureList edam:operation_3443 ;
+    sc:license "Not licensed" ;
+    sc:name "Atri-U" ;
+    sc:url "https://git.upd.unibe.ch/openscience/atri-u" ;
+    biotools:primaryContact <https://orcid.org/0000-0001-9818-2460> .
+
+<https://bio.tools/atrpred> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0121,
+        edam:topic_0634,
+        edam:topic_3305,
+        edam:topic_3416,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1371/JOURNAL.PCBI.1010204>,
+        "pmcid:PMC9321399",
+        "pubmed:35788746" ;
+    sc:description "A machine learning based tool for clinical decision making of anti-TNF treatment in rheumatoid arthritis patients." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_2949,
+        edam:operation_3092 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "ATRPred" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/ShuklaLab/ATRPred" .
+
 <https://bio.tools/atse> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0154,
@@ -97695,7 +84611,7 @@ Integrated analysis of genomes, transcriptomes, proteomes and drug responses of
         "Xiucai Ye" .
 
 <https://bio.tools/atsnp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_2885 ;
@@ -97711,7 +84627,7 @@ Integrated analysis of genomes, transcriptomes, proteomes and drug responses of
     biotools:primaryContact "Chandler Zu" .
 
 <https://bio.tools/atsubp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -97731,8 +84647,32 @@ Integrated analysis of genomes, transcriptomes, proteomes and drug responses of
     sc:url "http://bioinfo3.noble.org/AtSubP/" ;
     biotools:primaryContact "AtSubP team" .
 
+<https://bio.tools/atted-ii> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Bioinformatics portal",
+        "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0780,
+        edam:topic_3170,
+        edam:topic_3300,
+        edam:topic_3308,
+        edam:topic_3518 ;
+    sc:citation <https://doi.org/10.1093/PCP/PCAC041>,
+        "pubmed:35353884" ;
+    sc:description "ATTED-II is a gene coexpression database for nine plant species based on publicly available RNAseq and microarray data." ;
+    sc:featureList edam:operation_3463,
+        edam:operation_3891,
+        edam:operation_3960 ;
+    sc:isAccessibleForFree true ;
+    sc:license "CC-BY-SA-2.0" ;
+    sc:name "ATTED-II" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://atted.jp" .
+
 <https://bio.tools/attnsleep> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_3474 ;
     sc:citation <https://doi.org/10.1109/TNSRE.2021.3076234>,
@@ -97745,7 +84685,7 @@ Integrated analysis of genomes, transcriptomes, proteomes and drug responses of
     sc:url "https://github.com/emadeldeen24/AttnSleep" .
 
 <https://bio.tools/attract> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -97765,7 +84705,7 @@ Integrated analysis of genomes, transcriptomes, proteomes and drug responses of
     biotools:primaryContact "Samuel Zimmerman" .
 
 <https://bio.tools/auc-calculator-roc-plotter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3304,
@@ -97781,7 +84721,7 @@ Integrated analysis of genomes, transcriptomes, proteomes and drug responses of
     biotools:primaryContact "Uri Shalit" .
 
 <https://bio.tools/auc-comparison-p-value> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:citation <https://doi.org/10.1097/CCM.0b013e3182772adb>,
         "pmcid:PMC3609896",
@@ -97797,7 +84737,7 @@ Integrated analysis of genomes, transcriptomes, proteomes and drug responses of
     biotools:primaryContact "Louis Mayaud" .
 
 <https://bio.tools/aucell> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3308 ;
@@ -97816,8 +84756,19 @@ Integrated analysis of genomes, transcriptomes, proteomes and drug responses of
     sc:url "http://bioconductor.org/packages/release/bioc/html/AUCell.html" ;
     biotools:primaryContact "Sara Aibar" .
 
+<https://bio.tools/aucpred> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:citation <https://doi.org/10.1093/bioinformatics/btw446> ;
+    sc:description "AUCpreD is a method that predicts intrinsically disordered regions (IDR). AUCpreD works well without sequence profile, comparing favorably to or even outperforming many methods using sequence profile." ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "AUCpreD" ;
+    sc:operatingSystem "Linux" ;
+    sc:url "http://raptorx2.uchicago.edu/StructurePropertyPred/predict/" .
+
 <https://bio.tools/aucseg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_3384,
         edam:topic_3444,
@@ -97836,7 +84787,7 @@ Integrated analysis of genomes, transcriptomes, proteomes and drug responses of
     sc:url "https://github.com/Haifengtao/AUCseg" .
 
 <https://bio.tools/audiomath> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3304 ;
     sc:citation <https://doi.org/10.1016/J.HELIYON.2021.E06236>,
@@ -97851,7 +84802,7 @@ Integrated analysis of genomes, transcriptomes, proteomes and drug responses of
     sc:url "https://pypi.org/project/audiomath" .
 
 <https://bio.tools/audocker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0128,
@@ -97866,7 +84817,7 @@ Integrated analysis of genomes, transcriptomes, proteomes and drug responses of
     biotools:primaryContact "Dr M Murali Krishna Kumar" .
 
 <https://bio.tools/augustus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0623,
         edam:topic_3512 ;
@@ -97893,7 +84844,7 @@ Integrated analysis of genomes, transcriptomes, proteomes and drug responses of
     biotools:primaryContact "Mario Stanke" .
 
 <https://bio.tools/aurea> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3053,
@@ -97914,14 +84865,13 @@ Integrated analysis of genomes, transcriptomes, proteomes and drug responses of
 
 <https://bio.tools/aureme> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3497" ;
-            sc:name "DNA sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_3497" ] ;
+            sc:additionalType "http://edamontology.org/data_3497" ;
+            sc:name "DNA sequence (raw)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:encodingFormat "http://edamontology.org/format_2585" ;
+            sc:name "Pathway or network" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Workbench",
         "Workflow" ;
@@ -97937,7 +84887,7 @@ Integrated analysis of genomes, transcriptomes, proteomes and drug responses of
     sc:url "http://aureme.genouest.org" .
 
 <https://bio.tools/aureolib> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0203,
@@ -97953,7 +84903,7 @@ Integrated analysis of genomes, transcriptomes, proteomes and drug responses of
     sc:url "http://www.aureolib.de/index.php" .
 
 <https://bio.tools/auroc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269 ;
     sc:description "Compute AUROC (Area under Receiver Operating Characteristic) from frequency weighted instances of predictions and ratio of positive instances" ;
@@ -97967,7 +84917,7 @@ Integrated analysis of genomes, transcriptomes, proteomes and drug responses of
     biotools:primaryContact "Stefan Schroedl" .
 
 <https://bio.tools/aurocch> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3315 ;
     sc:description "Receiver Operating Characteristic curve with convex hull, plus areas under ROC and ROCCH." ;
@@ -97981,7 +84931,7 @@ Integrated analysis of genomes, transcriptomes, proteomes and drug responses of
     biotools:primaryContact "Ged Ridgway" .
 
 <https://bio.tools/auspp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0102,
@@ -97999,7 +84949,7 @@ Integrated analysis of genomes, transcriptomes, proteomes and drug responses of
     sc:url "https://github.com/highlei/AUSPP" .
 
 <https://bio.tools/australian-genomics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3063,
         edam:topic_3325,
@@ -98023,7 +84973,7 @@ See a sample consent form for an Australian Genomics flagship study.""" ;
     sc:url "http://australiangenomics.org.au" .
 
 <https://bio.tools/australian_cancer_atlas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_2640 ;
@@ -98040,7 +84990,7 @@ An interactive, online atlas designed to show how the burden of cancer varies ac
     sc:url "https://atlas.cancer.org.au" .
 
 <https://bio.tools/authentict> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0160,
@@ -98057,7 +85007,7 @@ An interactive, online atlas designed to show how the burden of cancer varies ac
     sc:url "https://github.com/StephanePeyregne/AuthentiCT" .
 
 <https://bio.tools/autism_genepheno> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0218,
         edam:topic_0602,
@@ -98074,7 +85024,7 @@ An interactive, online atlas designed to show how the burden of cancer varies ac
     biotools:primaryContact <https://orcid.org/0000-0003-4015-4787> .
 
 <https://bio.tools/autismkb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0208,
@@ -98097,7 +85047,7 @@ An interactive, online atlas designed to show how the burden of cancer varies ac
     biotools:primaryContact "AutismKB Team" .
 
 <https://bio.tools/auto-corpus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0218,
         edam:topic_0625,
@@ -98112,7 +85062,7 @@ An interactive, online atlas designed to show how the burden of cancer varies ac
     biotools:primaryContact <https://orcid.org/0000-0002-4971-9003> .
 
 <https://bio.tools/auto-hmm-lmf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0199,
@@ -98130,7 +85080,7 @@ An interactive, online atlas designed to show how the burden of cancer varies ac
     sc:url "https://github.com/emdadi/Auto-HMM-LMF" .
 
 <https://bio.tools/auto-qpcr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -98146,7 +85096,7 @@ An interactive, online atlas designed to show how the burden of cancer varies ac
     sc:url "http://auto-q-pcr.com/" .
 
 <https://bio.tools/auto-rickshaw> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_2828 ;
     sc:citation <https://doi.org/10.1107/S0907444905001307>,
@@ -98165,7 +85115,7 @@ An interactive, online atlas designed to show how the burden of cancer varies ac
     biotools:primaryContact <http://orcid.org/0000-0002-6058-7793> .
 
 <https://bio.tools/autoGCMSDataAnal> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0780,
         edam:topic_3172,
         edam:topic_3372 ;
@@ -98178,25 +85128,8 @@ Home >> Software >> autoGCMSDataAnal""" ;
     sc:name "autoGCMSDataAnal" ;
     sc:url "http://software.tobaccodb.org/software/autogcmsdataanal" .
 
-<https://bio.tools/autoantigenomics> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0121,
-        edam:topic_3050,
-        edam:topic_3360,
-        edam:topic_3518,
-        edam:topic_3520 ;
-    sc:citation <https://doi.org/10.1016/J.AUTREV.2019.102450>,
-        "pubmed:31838165" ;
-    sc:description """Holistic characterization of autoantigen repertoires for a better understanding of autoimmune diseases.
-
-Autoimmune diseases are mostly characterized by autoantibodies in the patients' serum or cerebrospinal fluid, representing diagnostic or prognostic biomarkers. For decades, research has focused on single autoantigens or panels of single autoantigens. In this article, we advocate to broaden the focus by addressing the entire autoantigen repertoire in a systemic "omics-like" way. This approach aims to capture the enormous biodiversity in the sets of targeted antigens and pave the way toward a more holistic understanding of the concerted character of antibody-related humoral immune responses. Ongoing technological progress permits high-throughput screenings of thousands of autoantigens in parallel, e.g., via protein microarrays, phage display, or immunoprecipitation with mass spectrometry.
-
-||| HOMEPAGE MISSING!""" ;
-    sc:featureList edam:operation_3501 ;
-    sc:name "autoantigenomics" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31838165" .
-
 <https://bio.tools/autoassemblyd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0196,
@@ -98212,7 +85145,7 @@ Autoimmune diseases are mostly characterized by autoantibodies in the patients'
     sc:url "http://sourceforge.net/projects/autoassemblyd/" .
 
 <https://bio.tools/autoassign> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0593,
         edam:topic_1317 ;
@@ -98229,7 +85162,7 @@ Autoimmune diseases are mostly characterized by autoantibodies in the patients'
     sc:url "http://www-nmr.cabm.rutgers.edu/NMRsoftware/nmr_software.html" .
 
 <https://bio.tools/autobiocad> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -98246,7 +85179,7 @@ Autoimmune diseases are mostly characterized by autoantibodies in the patients'
     biotools:primaryContact "Alfonso JARAMILLO" .
 
 <https://bio.tools/autobioseqpy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -98263,7 +85196,7 @@ Autoimmune diseases are mostly characterized by autoantibodies in the patients'
     sc:url "https://github.com/jingry/autoBioSeqpy" .
 
 <https://bio.tools/autobridge> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3179,
@@ -98278,7 +85211,7 @@ Autoimmune diseases are mostly characterized by autoantibodies in the patients'
     sc:url "https://github.com/Licheng-Guo/AutoBridge" .
 
 <https://bio.tools/autocat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_2640,
@@ -98295,7 +85228,7 @@ Autoimmune diseases are mostly characterized by autoantibodies in the patients'
     sc:url "https://github.com/cew88/AutoCAT" .
 
 <https://bio.tools/autoccs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3172,
@@ -98316,7 +85249,7 @@ Autoimmune diseases are mostly characterized by autoantibodies in the patients'
     sc:url "https://github.com/PNNL-Comp-Mass-Spec/AutoCCS" .
 
 <https://bio.tools/autoclass> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3170,
@@ -98331,7 +85264,7 @@ Autoimmune diseases are mostly characterized by autoantibodies in the patients'
     sc:url "https://github.com/datapplab/AutoClass" .
 
 <https://bio.tools/autoclass_ijm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0623,
@@ -98352,7 +85285,7 @@ Autoimmune diseases are mostly characterized by autoantibodies in the patients'
     biotools:primaryContact "Denis Mestivier" .
 
 <https://bio.tools/autoclassweb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:description "A web app to run AutoClass C Bayesian clustering" ;
     sc:isAccessibleForFree true ;
@@ -98365,7 +85298,7 @@ Autoimmune diseases are mostly characterized by autoantibodies in the patients'
     sc:url "https://github.com/pierrepo/autoclassweb" .
 
 <https://bio.tools/autoclasswrapper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0623,
         edam:topic_3391,
@@ -98382,7 +85315,7 @@ Autoimmune diseases are mostly characterized by autoantibodies in the patients'
     sc:url "https://github.com/pierrepo/autoclasswrapper" .
 
 <https://bio.tools/autocloner> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application",
         "Workflow" ;
@@ -98403,8 +85336,27 @@ Autoimmune diseases are mostly characterized by autoantibodies in the patients'
     sc:name "AutoCloner" ;
     sc:url "http://www.autocloner.com" .
 
+<https://bio.tools/autocnv> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0622,
+        edam:topic_3958 ;
+    sc:citation <https://doi.org/10.1186/S12864-021-08011-4>,
+        "pmcid:PMC8496072",
+        "pubmed:34615484" ;
+    sc:description "AutoCNV is a semiautomatic CNV interpretation system for clinical interpretation of copy number loss or gain based on the 2019 ACMG/ClinGen Technical Standards for CNVs. It is a semiautomatic CNV interpretation system based on the 2019 ACMG/ClinGen Technical Standards for CNVs." ;
+    sc:featureList edam:operation_3225,
+        edam:operation_3431,
+        edam:operation_3435,
+        edam:operation_3961 ;
+    sc:name "AutoCNV" ;
+    sc:softwareHelp <https://phoenix.bgi.com/autocnv/about>,
+        <https://phoenix.bgi.com/autocnv/faq> ;
+    sc:url "https://phoenix.bgi.com/autocnv/" .
+
 <https://bio.tools/autocoev> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0128,
@@ -98420,8 +85372,26 @@ Autoimmune diseases are mostly characterized by autoantibodies in the patients'
     sc:name "AutoCoEv" ;
     sc:url "https://github.com/mattilalab/autocoev" .
 
+<https://bio.tools/autocov> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workbench" ;
+    sc:applicationSubCategory edam:topic_0199,
+        edam:topic_0634,
+        edam:topic_3297 ;
+    sc:citation <https://doi.org/10.1186/S12859-022-04679-X>,
+        "pmcid:PMC9036508",
+        "pubmed:35468739" ;
+    sc:description "AutoCoV, a deep learning method with multiple loss object, that can track the early spread of COVID-19 in terms of spatial and temporal patterns until the disease is fully spread over the world in July 2020." ;
+    sc:featureList edam:operation_3432,
+        edam:operation_3472,
+        edam:operation_3935 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "AutoCoV" ;
+    sc:url "https://github.com/smaster7/AutoCoV" .
+
 <https://bio.tools/autocsa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0199,
@@ -98438,8 +85408,26 @@ Autoimmune diseases are mostly characterized by autoantibodies in the patients'
     sc:softwareVersion "1.0" ;
     sc:url "http://www.sanger.ac.uk/science/tools/autocsa" .
 
+<https://bio.tools/autodc> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workbench" ;
+    sc:applicationSubCategory edam:topic_0634,
+        edam:topic_0780,
+        edam:topic_3170,
+        edam:topic_3173,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC334>,
+        "pubmed:35583303" ;
+    sc:description "A tailored AutoML for disease classification from gene expression data" ;
+    sc:featureList edam:operation_3935 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "AutoDC" ;
+    sc:operatingSystem "Linux" ;
+    sc:url "https://github.com/dingdian110/AutoDC" .
+
 <https://bio.tools/autode> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0621,
@@ -98454,14 +85442,13 @@ Autoimmune diseases are mostly characterized by autoantibodies in the patients'
 
 <https://bio.tools/autodesk_molecule_viewer> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0883" ;
-            sc:name "Structure" ;
-            sc:sameAs "http://edamontology.org/data_0883" ] ;
+            sc:additionalType "http://edamontology.org/data_0883" ;
+            sc:name "Structure" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0889" ;
-            sc:name "Structural profile" ;
-            sc:sameAs "http://edamontology.org/data_0889" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0889" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Structural profile" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0092,
@@ -98481,7 +85468,7 @@ Autoimmune diseases are mostly characterized by autoantibodies in the patients'
     sc:url "https://moleculeviewer.lifesciences.autodesk.com/" .
 
 <https://bio.tools/autodimer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0632,
@@ -98498,7 +85485,7 @@ Autoimmune diseases are mostly characterized by autoantibodies in the patients'
     sc:url "http://www.cstl.nist.gov/strbase/AutoDimerHomepage/AutoDimerProgramHomepage.htm" .
 
 <https://bio.tools/autodock> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0154,
@@ -98518,7 +85505,7 @@ Autoimmune diseases are mostly characterized by autoantibodies in the patients'
     sc:url "http://autodock.scripps.edu/" .
 
 <https://bio.tools/autodock_vina> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_2275,
         edam:topic_3336 ;
@@ -98533,21 +85520,48 @@ Autoimmune diseases are mostly characterized by autoantibodies in the patients'
     sc:softwareVersion "1.1.2" ;
     sc:url "http://vina.scripps.edu/" .
 
-<https://bio.tools/autoencoders_CAE> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3384,
-        edam:topic_3444,
-        edam:topic_3474 ;
-    sc:citation <https://doi.org/10.3390/CANCERS11091235>,
-        "pmcid:PMC6770116",
-        "pubmed:31450799" ;
-    sc:description "> VERY_LOW CONFIDENCE! | > CORRECT NAME OF TOOL COULD ALSO BE 'stacked autoencoders', 'Cancer Diagnosis Using Deep Learning', 'autoencoders SAE convolutional autoencoders', 'autoencoders' | Cancer Diagnosis Using Deep Learning | Automated Cardiac Diagnosis Challenge (ACDC) | in conjonction with the STACOM workshop | The overall ACDC dataset was created from real clinical exams acquired at the University Hospital of Dijon" ;
-    sc:featureList edam:operation_3629,
-        edam:operation_3891 ;
-    sc:name "autoencoders CAE" ;
-    sc:url "https://www.creatis.insa-lyon.fr/Challenge/acdc/databases.html" .
+<https://bio.tools/autoesd> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0196,
+        edam:topic_0199,
+        edam:topic_0632,
+        edam:topic_3301,
+        edam:topic_3912 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAC417>,
+        "pmcid:PMC9252779",
+        "pubmed:35639727" ;
+    sc:description "A web tool for automatic editing sequence design for genetic manipulation of microorganisms." ;
+    sc:featureList edam:operation_0308,
+        edam:operation_0310,
+        edam:operation_3096,
+        edam:operation_3196 ;
+    sc:license "Not licensed" ;
+    sc:name "AutoESD" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://autoesd.biodesign.ac.cn/tutorial> ;
+    sc:softwareVersion "1.0" ;
+    sc:url "https://autoesd.biodesign.ac.cn/" .
+
+<https://bio.tools/autofair> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0091,
+        edam:topic_0769 ;
+    sc:citation <https://doi.org/10.1016/J.BBAGRM.2021.194767>,
+        "pubmed:34749004" ;
+    sc:description "AutoFAIR is portal for automating FAIR assessments for bioinformatics resources. AutoFAIR a semi-automated tool to assess a resource according to the Findability, Accessibility, Interoperability and Reusability (FAIR) criteria. The aim is to create a portal that presents the assessment score together with a report that researchers can use to gauge a resource." ;
+    sc:featureList edam:operation_2421 ;
+    sc:name "AutoFAIR" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://autofair.research.um.edu.mt/portal/home/" .
 
 <https://bio.tools/autofc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0605 ;
     sc:citation <https://doi.org/10.31234/OSF.IO/CNW52> ;
@@ -98560,7 +85574,7 @@ Autoimmune diseases are mostly characterized by autoantibodies in the patients'
     sc:url "https://github.com/tspsyched/autoFC" .
 
 <https://bio.tools/autogenes> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3170,
@@ -98576,7 +85590,7 @@ Autoimmune diseases are mostly characterized by autoantibodies in the patients'
     sc:url "https://github.com/theislab/AutoGeneS" .
 
 <https://bio.tools/autograph> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0654,
@@ -98590,7 +85604,7 @@ Autoimmune diseases are mostly characterized by autoantibodies in the patients'
     biotools:primaryContact "Derrien T" .
 
 <https://bio.tools/autograph-cluster> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2275,
@@ -98607,7 +85621,7 @@ Autoimmune diseases are mostly characterized by autoantibodies in the patients'
     sc:url "https://github.com/TanemuraKiyoto/AutoGraph" .
 
 <https://bio.tools/autogrow4> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2258,
@@ -98626,14 +85640,14 @@ Autoimmune diseases are mostly characterized by autoantibodies in the patients'
 
 <https://bio.tools/autohd> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_2200" ;
+            sc:name "Protein sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1537" ;
-            sc:name "Protein structure report" ;
-            sc:sameAs "http://edamontology.org/data_1537" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1537" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Protein structure report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -98649,7 +85663,7 @@ Autoimmune diseases are mostly characterized by autoantibodies in the patients'
     sc:url "http://www.ms-utils.org/autohd.html" .
 
 <https://bio.tools/autoideogram> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_2885,
         edam:topic_3179 ;
@@ -98661,8 +85675,24 @@ Autoimmune diseases are mostly characterized by autoantibodies in the patients'
     sc:softwareVersion "20150224" ;
     sc:url "http://dna.leeds.ac.uk/AutoIdeogram/" .
 
+<https://bio.tools/automal_6000> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Desktop application" ;
+    sc:applicationSubCategory edam:topic_3382 ;
+    sc:citation <https://doi.org/10.1016/J.ULTRAMIC.2022.113493>,
+        "pubmed:35349939" ;
+    sc:description "Scientific software for analyzing 6xxx Al-Mg-Si-(Cu) precipitates in atomic resolution HAADF-STEM images." ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "AutomAl 6000" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <http://automal.org/doc.html> ;
+    sc:url "http://automal.org" .
+
 <https://bio.tools/automated-counting-bacterial-colonies> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3318,
@@ -98680,7 +85710,7 @@ Autoimmune diseases are mostly characterized by autoantibodies in the patients'
     biotools:primaryContact "Daniel Asarnow" .
 
 <https://bio.tools/automated-measurement-muscle-architecture-ultrasound-images> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -98697,7 +85727,7 @@ Autoimmune diseases are mostly characterized by autoantibodies in the patients'
     biotools:primaryContact "Benjamin Infantolino" .
 
 <https://bio.tools/automatic-objective-neuronal-spike-detection> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3304,
@@ -98713,8 +85743,30 @@ Autoimmune diseases are mostly characterized by autoantibodies in the patients'
     sc:url "https://www.mathworks.com/matlabcentral/fileexchange/55227-automatic-objective-neuronal-spike-detection" ;
     biotools:primaryContact "Jarno Tanskanen" .
 
+<https://bio.tools/automatic_segmentation_tool> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Image" ] ;
+    bsc:output [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Image" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0091,
+        edam:topic_3372,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1016/j.eswa.2020.113387> ;
+    sc:description "Tool that automatically detects the histological type of a tumor region of interest from Whole Slide Imaging technique" ;
+    sc:featureList edam:operation_3443 ;
+    sc:name "Automatic segmentation tool" ;
+    sc:operatingSystem "Linux",
+        "Windows" ;
+    sc:url "http://telemed.uca.es:443/" .
+
 <https://bio.tools/automatrix> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3293,
@@ -98729,7 +85781,7 @@ Autoimmune diseases are mostly characterized by autoantibodies in the patients'
     sc:url "http://www.uhnresearch.ca/labs/tillier/software.htm#6" .
 
 <https://bio.tools/automekin> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0176,
         edam:topic_0602,
@@ -98747,8 +85799,30 @@ Autoimmune diseases are mostly characterized by autoantibodies in the patients'
     sc:operatingSystem "Linux" ;
     sc:url "https://rxnkin.usc.es/amk/" .
 
+<https://bio.tools/automrm> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0593,
+        edam:topic_3473,
+        edam:topic_3474,
+        edam:topic_3520 ;
+    sc:citation <https://doi.org/10.1021/ACS.ANALCHEM.1C05224>,
+        "pmcid:PMC9047440",
+        "pubmed:35412809" ;
+    sc:description "An R Package for Fully Automatic LC-QQQ-MS Data Preprocessing Powered by Machine Learning." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_2409,
+        edam:operation_3215 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "automRm" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://gitlab.gwdg.de/joerg.buescher/automrm" .
+
 <https://bio.tools/autoosc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2259,
         edam:topic_3307,
@@ -98764,7 +85838,7 @@ Autoimmune diseases are mostly characterized by autoantibodies in the patients'
     sc:url "http://babylone.ulb.ac.be/autoosc/" .
 
 <https://bio.tools/autopad> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_3318,
@@ -98782,14 +85856,12 @@ Autoimmune diseases are mostly characterized by autoantibodies in the patients'
 
 <https://bio.tools/autophylo> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2886" ;
-            sc:name "Protein sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2886" ] ;
+            sc:additionalType "http://edamontology.org/data_2886" ;
+            sc:name "Protein sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0872" ;
-            sc:name "Phylogenetic tree" ;
-            sc:sameAs "http://edamontology.org/data_0872" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0872" ;
+            sc:name "Phylogenetic tree" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3293 ;
     sc:description "An automatic pipeline for phylogenetic analysis." ;
@@ -98802,7 +85874,7 @@ Autoimmune diseases are mostly characterized by autoantibodies in the patients'
     sc:url "http://code.google.com/p/autophylo/" .
 
 <https://bio.tools/autorelacs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0769,
@@ -98820,7 +85892,7 @@ Autoimmune diseases are mostly characterized by autoantibodies in the patients'
     sc:url "https://github.com/FrancescoFerrari88/AutoRELACS" .
 
 <https://bio.tools/autoroot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0780,
@@ -98838,7 +85910,7 @@ Autoimmune diseases are mostly characterized by autoantibodies in the patients'
     biotools:primaryContact "Michael P. Pound" .
 
 <https://bio.tools/autorpa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_2275,
@@ -98854,7 +85926,7 @@ Autoimmune diseases are mostly characterized by autoantibodies in the patients'
     sc:url "http://rpa.renlab.org" .
 
 <https://bio.tools/autoscan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0634,
@@ -98869,7 +85941,7 @@ Autoimmune diseases are mostly characterized by autoantibodies in the patients'
     sc:url "http://www.helsinki.fi/~tsjuntun/autoscan/index.html" .
 
 <https://bio.tools/autoscore> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3379,
         edam:topic_3421,
@@ -98884,8 +85956,27 @@ Autoimmune diseases are mostly characterized by autoantibodies in the patients'
     sc:name "AutoScore" ;
     sc:url "https://github.com/nliulab/AutoScore" .
 
+<https://bio.tools/autoscore-survival> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library",
+        "Workbench" ;
+    sc:applicationSubCategory edam:topic_2815,
+        edam:topic_3379,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1016/J.JBI.2021.103959>,
+        "pubmed:34826628" ;
+    sc:description "Given a new dataset with time-to-event outcomes and baseline covariates, the AutoScore-Survival package provides a pipeline of functions to split data and implement the six modules to generate the final scores that require minimal manipulation from users." ;
+    sc:featureList edam:operation_3659,
+        edam:operation_3936 ;
+    sc:isAccessibleForFree true ;
+    sc:name "AutoScore-Survival" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/nliulab/AutoScore-Survival" .
+
 <https://bio.tools/autoseqman> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0654,
@@ -98902,7 +85993,7 @@ Autoimmune diseases are mostly characterized by autoantibodies in the patients'
     biotools:primaryContact "Sun Yan-Bo" .
 
 <https://bio.tools/autosequin> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654 ;
@@ -98916,7 +86007,7 @@ Autoimmune diseases are mostly characterized by autoantibodies in the patients'
     sc:url "http://indra.mullins.microbiol.washington.edu/perlscript/docs/AutoSequin.html" .
 
 <https://bio.tools/autosite> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3510,
         edam:topic_3534 ;
@@ -98933,7 +86024,7 @@ Autoimmune diseases are mostly characterized by autoantibodies in the patients'
     biotools:primaryContact "Michel F. Sanner" .
 
 <https://bio.tools/autosnpa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_2885,
@@ -98948,7 +86039,7 @@ Autoimmune diseases are mostly characterized by autoantibodies in the patients'
     biotools:primaryContact "Ian Carr" .
 
 <https://bio.tools/autosnpdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
@@ -98970,8 +86061,25 @@ Autoimmune diseases are mostly characterized by autoantibodies in the patients'
     sc:softwareHelp <http://autosnpdb.appliedbioinformatics.com.au/help.htm> ;
     sc:url "http://autosnpdb.appliedbioinformatics.com.au/index.jsp?species=" .
 
+<https://bio.tools/autosolvate> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workflow" ;
+    sc:applicationSubCategory edam:topic_3047,
+        edam:topic_3314,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1063/5.0084833>,
+        "pubmed:35364887" ;
+    sc:description "Automated workflow for generating quantum chemistry calculation of explicitly solvated molecules" ;
+    sc:isAccessibleForFree true ;
+    sc:license "BSD-3-Clause" ;
+    sc:name "AutoSolvate" ;
+    sc:operatingSystem "Linux",
+        "Windows" ;
+    sc:softwareHelp <https://autosolvate.readthedocs.io/en/latest/> ;
+    sc:url "https://github.com/Liu-group/AutoSolvate" .
+
 <https://bio.tools/autospill> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -98987,7 +86095,7 @@ Autoimmune diseases are mostly characterized by autoantibodies in the patients'
     sc:url "https://autospill.vib.be" .
 
 <https://bio.tools/autotune> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3382,
@@ -98999,8 +86107,31 @@ Autoimmune diseases are mostly characterized by autoantibodies in the patients'
     sc:name "AutoTune" ;
     sc:url "https://github.com/JekyllAndHyde8999/AutoTune_CNN_TransferLearning" .
 
+<https://bio.tools/avarda> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workbench" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_3063,
+        edam:topic_3305,
+        edam:topic_3324,
+        edam:topic_3400 ;
+    sc:citation <https://doi.org/10.1016/J.EBIOM.2021.103747>,
+        "pmcid:PMC8688874",
+        "pubmed:34922324" ;
+    sc:description "Here we present the AntiViral Antibody Response Deconvolution Algorithm (AVARDA), a multi-module software package for analyzing VirScan datasets" ;
+    sc:featureList edam:operation_0252,
+        edam:operation_0416,
+        edam:operation_3629 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "AVARDA" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/drmonaco/AVARDA" .
+
 <https://bio.tools/avatar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0203,
         edam:topic_0634,
@@ -99015,7 +86146,7 @@ Autoimmune diseases are mostly characterized by autoantibodies in the patients'
     sc:url "https://github.com/sysbio-bioinf/avatar" .
 
 <https://bio.tools/avatree> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_2269,
         edam:topic_3384,
@@ -99033,7 +86164,7 @@ Autoimmune diseases are mostly characterized by autoantibodies in the patients'
     sc:url "https://gitlab.com/LungModelling/avatree" .
 
 <https://bio.tools/avedissr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0780,
         edam:topic_2885,
@@ -99053,7 +86184,7 @@ Autoimmune diseases are mostly characterized by autoantibodies in the patients'
     biotools:primaryContact "Yong-Bi Fu" .
 
 <https://bio.tools/avia> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2533,
         edam:topic_3053 ;
@@ -99071,7 +86202,7 @@ Autoimmune diseases are mostly characterized by autoantibodies in the patients'
     sc:url "https://avia-abcc.ncifcrf.gov" .
 
 <https://bio.tools/avian-immunome-db> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0154,
@@ -99089,7 +86220,7 @@ Autoimmune diseases are mostly characterized by autoantibodies in the patients'
     sc:url "https://avimm.ab.mpg.de" .
 
 <https://bio.tools/aviator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3068,
@@ -99104,7 +86235,7 @@ Autoimmune diseases are mostly characterized by autoantibodies in the patients'
     sc:url "https://www.ccb.uni-saarland.de/aviator" .
 
 <https://bio.tools/avis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0176,
@@ -99126,7 +86257,7 @@ Autoimmune diseases are mostly characterized by autoantibodies in the patients'
     sc:url "https://github.com/avis-md/avis" .
 
 <https://bio.tools/avogadro> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_2275,
         edam:topic_3314,
@@ -99143,7 +86274,7 @@ Autoimmune diseases are mostly characterized by autoantibodies in the patients'
     sc:url "http://avogadro.cc/" .
 
 <https://bio.tools/avpdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -99164,7 +86295,7 @@ Autoimmune diseases are mostly characterized by autoantibodies in the patients'
     biotools:primaryContact "Dr. Manoj Kumar" .
 
 <https://bio.tools/avppred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0781,
@@ -99186,7 +86317,7 @@ Autoimmune diseases are mostly characterized by autoantibodies in the patients'
     biotools:primaryContact "Dr. Manoj Kumar" .
 
 <https://bio.tools/awcluster> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2640,
@@ -99203,7 +86334,7 @@ Autoimmune diseases are mostly characterized by autoantibodies in the patients'
     sc:url "https://github.com/mpouryah/aWCluster" .
 
 <https://bio.tools/awfisher> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3308,
         edam:topic_3360,
         edam:topic_3518 ;
@@ -99215,7 +86346,7 @@ Autoimmune diseases are mostly characterized by autoantibodies in the patients'
     sc:url "https://github.com/Caleb-Huo/AWFisher" .
 
 <https://bio.tools/awsem-suite> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0130,
@@ -99236,8 +86367,24 @@ Autoimmune diseases are mostly characterized by autoantibodies in the patients'
     sc:softwareHelp <https://awsem.rice.edu/Documentation> ;
     sc:url "https://awsem.rice.edu" .
 
+<https://bio.tools/awsnet> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workbench" ;
+    sc:applicationSubCategory edam:topic_0634,
+        edam:topic_3444,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1016/J.MEDIA.2022.102362>,
+        "pubmed:35091277" ;
+    sc:description "An auto-weighted supervision attention network for myocardial scar and edema segmentation in multi-sequence cardiac magnetic resonance images." ;
+    sc:isAccessibleForFree true ;
+    sc:name "AWSnet" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/soleilssss/AWSnet/tree/master" .
+
 <https://bio.tools/awst> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3170,
@@ -99252,7 +86399,7 @@ Autoimmune diseases are mostly characterized by autoantibodies in the patients'
     sc:url "https://github.com/drisso/awst" .
 
 <https://bio.tools/axel-f> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0203,
         edam:topic_2830,
@@ -99269,7 +86416,7 @@ Antigen eXpression based Epitope Likelihood-Function (AXEL-F)""" ;
     sc:url "http://axelf-beta.iedb.org/axelf" .
 
 <https://bio.tools/axima2analyze> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3383,
@@ -99280,7 +86427,7 @@ Antigen eXpression based Epitope Likelihood-Function (AXEL-F)""" ;
     sc:url "http://www.maldi-msi.org/index.php?option=com_content&view=article&id=87&Itemid=48" .
 
 <https://bio.tools/axiome> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_3697 ;
@@ -99295,7 +86442,7 @@ Antigen eXpression based Epitope Likelihood-Function (AXEL-F)""" ;
     biotools:primaryContact "Dr. Josh Neufeld" .
 
 <https://bio.tools/axon-analysis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3304,
@@ -99314,7 +86461,7 @@ Antigen eXpression based Epitope Likelihood-Function (AXEL-F)""" ;
     biotools:primaryContact "Katrin Deinhardt" .
 
 <https://bio.tools/axonpacking> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3334,
@@ -99333,7 +86480,7 @@ Antigen eXpression based Epitope Likelihood-Function (AXEL-F)""" ;
     biotools:primaryContact "Julien Cohen-Adad" .
 
 <https://bio.tools/axonseg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3304,
@@ -99352,7 +86499,7 @@ Antigen eXpression based Epitope Likelihood-Function (AXEL-F)""" ;
     biotools:primaryContact "Aldo Zaimi" .
 
 <https://bio.tools/ayla> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0130,
         edam:topic_0166,
@@ -99370,7 +86517,7 @@ Antigen eXpression based Epitope Likelihood-Function (AXEL-F)""" ;
     biotools:primaryContact "Dr. William Harvey" .
 
 <https://bio.tools/azahar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0092,
@@ -99390,7 +86537,7 @@ Antigen eXpression based Epitope Likelihood-Function (AXEL-F)""" ;
     biotools:primaryContact "Arroyuelo A." .
 
 <https://bio.tools/azara> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0593,
         edam:topic_1317 ;
@@ -99405,7 +86552,7 @@ Antigen eXpression based Epitope Likelihood-Function (AXEL-F)""" ;
     sc:url "http://www.ccpn.ac.uk/azara/" .
 
 <https://bio.tools/azphewas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Bioinformatics portal" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3325,
@@ -99423,8 +86570,34 @@ Antigen eXpression based Epitope Likelihood-Function (AXEL-F)""" ;
     sc:url "http://azphewas.com/" ;
     biotools:primaryContact <https://orcid.org/0000-0002-1527-961X> .
 
+<https://bio.tools/b-amp> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0160,
+        edam:topic_2275,
+        edam:topic_3068,
+        edam:topic_3382 ;
+    sc:citation <https://doi.org/10.3389/FCIMB.2021.803774>,
+        "pmcid:PMC8716830",
+        "pubmed:34976872" ;
+    sc:description "B-AMP is an Antimicrobial Peptide (AMP) repository for biofilms, consisting of a vast library of 5544 structural AMP models, AMPs annotated to relevant biofilm literature, and protein-peptide interaction models with potential biofilm targets." ;
+    sc:featureList edam:operation_0321,
+        edam:operation_0482,
+        edam:operation_3778,
+        edam:operation_3802,
+        edam:operation_3899 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "B-AMP" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://b-amp.karishmakaushiklab.com" .
+
 <https://bio.tools/b-cosfire-filters> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3070,
@@ -99447,7 +86620,7 @@ Antigen eXpression based Epitope Likelihood-Function (AXEL-F)""" ;
     biotools:primaryContact "Nicola Strisciuglio" .
 
 <https://bio.tools/b-gex> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0625,
         edam:topic_2640,
@@ -99464,7 +86637,7 @@ Antigen eXpression based Epitope Likelihood-Function (AXEL-F)""" ;
     sc:url "https://github.com/xuwenjian85/B-GEX" .
 
 <https://bio.tools/b-nem> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2259,
@@ -99480,10 +86653,10 @@ Antigen eXpression based Epitope Likelihood-Function (AXEL-F)""" ;
 
 <https://bio.tools/b2btools> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2886" ;
-            sc:name "Protein sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2886" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2886" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence record" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description """The bio2byte tools server (b2btools) offers the following single protein sequence based predictions:
 - Backbone and sidechain dynamics (DynaMine)
 - Helix, sheet, coil and polyproline-II propensity
@@ -99498,8 +86671,29 @@ In addition, multiple sequence alignments (MSAs) can be uploaded to scan the 'bi
     sc:name "b2bTools" ;
     sc:url "https://www.bio2byte.be/b2btools/" .
 
+<https://bio.tools/b3db> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_2258,
+        edam:topic_3047,
+        edam:topic_3332,
+        edam:topic_3374 ;
+    sc:citation <https://doi.org/10.1038/S41597-021-01069-5>,
+        "pmcid:PMC8556334",
+        "pubmed:34716354" ;
+    sc:description "Blood-Brain Barrier Database (B3DB) is a curated diverse molecular database of blood-brain barrier permeability with chemical descriptors." ;
+    sc:featureList edam:operation_3431,
+        edam:operation_3659,
+        edam:operation_3938 ;
+    sc:isAccessibleForFree true ;
+    sc:license "CC0-1.0" ;
+    sc:name "B3DB" ;
+    sc:url "https://github.com/theochem/B3DB" ;
+    biotools:primaryContact "Paul W. Ayers" .
+
 <https://bio.tools/b3pdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3304,
@@ -99519,7 +86713,7 @@ In addition, multiple sequence alignments (MSAs) can be uploaded to scan the 'bi
     sc:url "https://webs.iiitd.edu.in/raghava/b3pdb/" .
 
 <https://bio.tools/b3pred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0804,
@@ -99536,7 +86730,7 @@ In addition, multiple sequence alignments (MSAs) can be uploaded to scan the 'bi
     sc:url "https://webs.iiitd.edu.in/raghava/b3pred/" .
 
 <https://bio.tools/b6db> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_3292 ;
     sc:citation <https://doi.org/10.1186/1471-2105-10-273> ;
@@ -99552,7 +86746,7 @@ In addition, multiple sequence alignments (MSAs) can be uploaded to scan the 'bi
     biotools:primaryContact "Riccardo Percudani" .
 
 <https://bio.tools/bAIcis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0611,
         edam:topic_3315 ;
@@ -99563,7 +86757,7 @@ In addition, multiple sequence alignments (MSAs) can be uploaded to scan the 'bi
     sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31486672" .
 
 <https://bio.tools/bTSSfinder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0749 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btw629> ;
@@ -99580,7 +86774,7 @@ In addition, multiple sequence alignments (MSAs) can be uploaded to scan the 'bi
         "Vladimir B. Bajic" .
 
 <https://bio.tools/bWGR> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0625,
@@ -99595,10 +86789,10 @@ In addition, multiple sequence alignments (MSAs) can be uploaded to scan the 'bi
 
 <https://bio.tools/ba-plotter> a sc:SoftwareApplication ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3603" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2269 ;
     sc:citation <https://doi.org/10.1016/J.RVSC.2021.05.017>,
@@ -99615,7 +86809,7 @@ In addition, multiple sequence alignments (MSAs) can be uploaded to scan the 'bi
     sc:url "https://huygens.science.uva.nl/BA-plotteR" .
 
 <https://bio.tools/baalchip> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3168,
@@ -99636,34 +86830,28 @@ In addition, multiple sequence alignments (MSAs) can be uploaded to scan the 'bi
 
 <https://bio.tools/babelomics> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2082" ;
-            sc:name "Matrix" ;
-            sc:sameAs "http://edamontology.org/data_2082" ],
+            sc:additionalType "http://edamontology.org/data_3110" ;
+            sc:name "Raw microarray data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3112" ;
-            sc:name "Gene expression matrix" ;
-            sc:sameAs "http://edamontology.org/data_3112" ],
+            sc:additionalType "http://edamontology.org/data_2872" ;
+            sc:name "ID list" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3110" ;
-            sc:name "Raw microarray data" ;
-            sc:sameAs "http://edamontology.org/data_3110" ],
+            sc:additionalType "http://edamontology.org/data_3112" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Gene expression matrix" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2872" ;
-            sc:name "ID list" ;
-            sc:sameAs "http://edamontology.org/data_2872" ] ;
+            sc:additionalType "http://edamontology.org/data_2082" ;
+            sc:name "Matrix" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0582" ;
-            sc:name "Ontology" ;
-            sc:sameAs "http://edamontology.org/data_0582" ],
+            sc:additionalType "http://edamontology.org/data_0582" ;
+            sc:name "Ontology" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ],
+            sc:additionalType "http://edamontology.org/data_1636" ;
+            sc:name "Heat map" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1636" ;
-            sc:name "Heat map" ;
-            sc:sameAs "http://edamontology.org/data_1636" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0622,
@@ -99694,7 +86882,7 @@ In addition, multiple sequence alignments (MSAs) can be uploaded to scan the 'bi
     biotools:primaryContact "babelomics@cipf.es  (Francisco García)" .
 
 <https://bio.tools/bac> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -99714,7 +86902,7 @@ In addition, multiple sequence alignments (MSAs) can be uploaded to scan the 'bi
     biotools:primaryContact "Raphael Gottardo" .
 
 <https://bio.tools/baca> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0203,
@@ -99735,7 +86923,7 @@ In addition, multiple sequence alignments (MSAs) can be uploaded to scan the 'bi
     biotools:primaryContact "Vittorio Fortino" .
 
 <https://bio.tools/bacant> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0622,
@@ -99752,7 +86940,7 @@ In addition, multiple sequence alignments (MSAs) can be uploaded to scan the 'bi
     sc:url "http://bacant.net" .
 
 <https://bio.tools/bacarena> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3344,
         edam:topic_3524 ;
@@ -99769,7 +86957,7 @@ In addition, multiple sequence alignments (MSAs) can be uploaded to scan the 'bi
     biotools:primaryContact "Johannes Zimmermann" .
 
 <https://bio.tools/bacarscan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0160,
@@ -99789,7 +86977,7 @@ In addition, multiple sequence alignments (MSAs) can be uploaded to scan the 'bi
     sc:url "http://proteininformatics.org/mkumar/bacarscan" .
 
 <https://bio.tools/bacav> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3077,
         edam:topic_3379 ;
@@ -99804,74 +86992,73 @@ In addition, multiple sequence alignments (MSAs) can be uploaded to scan the 'bi
 
 <https://bio.tools/bacdive> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1045" ;
-            sc:name "Species name" ;
-            sc:sameAs "http://edamontology.org/data_1045" ],
+            sc:additionalType "http://edamontology.org/data_2912" ;
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-            sc:identifier "http://edamontology.org/data_2912" ;
-            sc:name "Strain accession" ;
-            sc:sameAs "http://edamontology.org/data_2912" ] ;
+            sc:additionalType "http://edamontology.org/data_1045" ;
+            sc:encodingFormat "http://edamontology.org/format_1964" ;
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-            sc:identifier "http://edamontology.org/data_3719" ;
-            sc:name "Biosafety classification" ;
-            sc:sameAs "http://edamontology.org/data_3719" ],
+            sc:additionalType "http://edamontology.org/data_1097" ;
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-            sc:name "Sequence accession (nucleic acid)" ;
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-            sc:name "Nucleic acid property" ;
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-            sc:name "Taxonomic classification" ;
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         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3718" ;
-            sc:name "Pathogenicity report" ;
-            sc:sameAs "http://edamontology.org/data_3718" ],
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-            sc:name "Morphology parameter" ;
-            sc:sameAs "http://edamontology.org/data_3723" ],
+            sc:additionalType "http://edamontology.org/data_3718" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
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-            sc:name "Strain accession" ;
-            sc:sameAs "http://edamontology.org/data_2912" ],
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-            sc:name "Physiology parameter" ;
-            sc:sameAs "http://edamontology.org/data_3722" ],
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-            sc:name "Isolation source" ;
-            sc:sameAs "http://edamontology.org/data_3721" ],
+            sc:additionalType "http://edamontology.org/data_0912" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
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-            sc:name "NCBI taxonomy ID" ;
-            sc:sameAs "http://edamontology.org/data_1179" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2912" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Strain accession" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
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         edam:topic_3050,
@@ -99897,54 +87084,51 @@ In addition, multiple sequence alignments (MSAs) can be uploaded to scan the 'bi
 
 <https://bio.tools/bacdive_ws> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1045" ;
-            sc:name "Species name" ;
-            sc:sameAs "http://edamontology.org/data_1045" ],
+            sc:additionalType "http://edamontology.org/data_1870" ;
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-            sc:identifier "http://edamontology.org/data_1870" ;
-            sc:name "Genus name" ;
-            sc:sameAs "http://edamontology.org/data_1870" ],
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-            sc:identifier "http://edamontology.org/data_2912" ;
-            sc:name "Strain accession" ;
-            sc:sameAs "http://edamontology.org/data_2912" ] ;
+            sc:additionalType "http://edamontology.org/data_1045" ;
+            sc:name "Species name" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1097" ;
-            sc:name "Sequence accession (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1097" ],
+            sc:additionalType "http://edamontology.org/data_1179" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
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-            sc:name "NCBI taxonomy ID" ;
-            sc:sameAs "http://edamontology.org/data_1179" ],
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-            sc:identifier "http://edamontology.org/data_0912" ;
-            sc:name "Nucleic acid property" ;
-            sc:sameAs "http://edamontology.org/data_0912" ],
+            sc:additionalType "http://edamontology.org/data_0912" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
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-            sc:identifier "http://edamontology.org/data_2912" ;
-            sc:name "Strain accession" ;
-            sc:sameAs "http://edamontology.org/data_2912" ],
+            sc:additionalType "http://edamontology.org/data_2912" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
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-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_1872" ;
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-            sc:name "Database search results" ;
-            sc:sameAs "http://edamontology.org/data_2080" ],
+            sc:additionalType "http://edamontology.org/data_2093" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
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-            sc:identifier "http://edamontology.org/data_2087" ;
-            sc:name "Molecular property" ;
-            sc:sameAs "http://edamontology.org/data_2087" ],
+            sc:additionalType "http://edamontology.org/data_1097" ;
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-            sc:identifier "http://edamontology.org/data_2093" ;
-            sc:name "Data reference" ;
-            sc:sameAs "http://edamontology.org/data_2093" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Data" ],
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-            sc:identifier "http://edamontology.org/data_1872" ;
-            sc:name "Taxonomic classification" ;
-            sc:sameAs "http://edamontology.org/data_1872" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2080" ;
+            sc:encodingFormat "http://edamontology.org/format_3464" ;
+            sc:name "Database search results" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Database portal" ;
     sc:applicationSubCategory edam:topic_0621,
@@ -99967,14 +87151,12 @@ In addition, multiple sequence alignments (MSAs) can be uploaded to scan the 'bi
 
 <https://bio.tools/bacdiver> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0842" ;
-            sc:name "Identifier" ;
-            sc:sameAs "http://edamontology.org/data_0842" ] ;
+            sc:additionalType "http://edamontology.org/data_0842" ;
+            sc:name "Identifier" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library",
         "Plug-in",
@@ -100000,7 +87182,7 @@ In addition, multiple sequence alignments (MSAs) can be uploaded to scan the 'bi
     biotools:primaryContact <https://orcid.org/0000-0001-5135-5758> .
 
 <https://bio.tools/baceffluxpred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -100024,14 +87206,14 @@ In addition, multiple sequence alignments (MSAs) can be uploaded to scan the 'bi
 
 <https://bio.tools/bacello> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0140,
         edam:topic_0621,
@@ -100050,7 +87232,7 @@ In addition, multiple sequence alignments (MSAs) can be uploaded to scan the 'bi
     biotools:primaryContact "Andrea Pierleoni" .
 
 <https://bio.tools/bach> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082 ;
     sc:citation <https://doi.org/10.1016/j.cpc.2013.07.019> ;
@@ -100068,7 +87250,7 @@ In addition, multiple sequence alignments (MSAs) can be uploaded to scan the 'bi
     biotools:primaryContact "Antonio Trovato" .
 
 <https://bio.tools/bacidb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0637,
@@ -100086,7 +87268,7 @@ In addition, multiple sequence alignments (MSAs) can be uploaded to scan the 'bi
     sc:url "http://AciDB.cl" .
 
 <https://bio.tools/backclip> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_3308,
@@ -100103,14 +87285,12 @@ In addition, multiple sequence alignments (MSAs) can be uploaded to scan the 'bi
 
 <https://bio.tools/backtranambig> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2886" ;
-            sc:name "Protein sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2886" ] ;
+            sc:additionalType "http://edamontology.org/data_2886" ;
+            sc:name "Protein sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2887" ;
-            sc:name "Nucleic acid sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2887" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2887" ;
+            sc:name "Nucleic acid sequence record" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203 ;
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@@ -100141,14 +87321,12 @@ In addition, multiple sequence alignments (MSAs) can be uploaded to scan the 'bi
 
 <https://bio.tools/backtranambig-ebi> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:name "Protein sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:name "Nucleic acid sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
@@ -100171,18 +87349,15 @@ In addition, multiple sequence alignments (MSAs) can be uploaded to scan the 'bi
 
 <https://bio.tools/backtranseq> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2886" ;
-            sc:name "Protein sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2886" ],
+            sc:additionalType "http://edamontology.org/data_2886" ;
+            sc:name "Protein sequence record" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1597" ;
-            sc:name "Codon usage table" ;
-            sc:sameAs "http://edamontology.org/data_1597" ] ;
+            sc:additionalType "http://edamontology.org/data_1597" ;
+            sc:name "Codon usage table" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -100213,14 +87388,12 @@ In addition, multiple sequence alignments (MSAs) can be uploaded to scan the 'bi
 
 <https://bio.tools/backtranseq-ebi> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:name "Protein sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:name "Nucleic acid sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -100243,7 +87416,7 @@ In addition, multiple sequence alignments (MSAs) can be uploaded to scan the 'bi
     biotools:primaryContact "Web Production" .
 
 <https://bio.tools/bacmap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0602,
@@ -100266,7 +87439,7 @@ In addition, multiple sequence alignments (MSAs) can be uploaded to scan the 'bi
     biotools:primaryContact "Feedback form" .
 
 <https://bio.tools/bacnet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3372,
         edam:topic_3391 ;
     sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAA828>,
@@ -100278,7 +87451,7 @@ In addition, multiple sequence alignments (MSAs) can be uploaded to scan the 'bi
     sc:url "https://github.com/becavin-lab/bacnet" .
 
 <https://bio.tools/bacoca> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_2269,
@@ -100295,7 +87468,7 @@ In addition, multiple sequence alignments (MSAs) can be uploaded to scan the 'bi
     biotools:primaryContact "Torsten H. Struck" .
 
 <https://bio.tools/bacom> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_2269,
@@ -100312,7 +87485,7 @@ In addition, multiple sequence alignments (MSAs) can be uploaded to scan the 'bi
     sc:url "http://code.google.com/p/bacom/" .
 
 <https://bio.tools/bacon> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3173,
@@ -100334,7 +87507,7 @@ In addition, multiple sequence alignments (MSAs) can be uploaded to scan the 'bi
     biotools:primaryContact <http://orcid.org/0000-0002-8754-6158> .
 
 <https://bio.tools/bacphlip> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0736,
         edam:topic_0769,
@@ -100348,8 +87521,30 @@ In addition, multiple sequence alignments (MSAs) can be uploaded to scan the 'bi
     sc:name "BACPHLIP" ;
     sc:url "https://github.com/adamhockenberry/bacphlip" .
 
+<https://bio.tools/bacpi> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0108,
+        edam:topic_0128,
+        edam:topic_0154,
+        edam:topic_3336,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC035>,
+        "pubmed:35043942" ;
+    sc:description "A bi-directional attention neural network for compound-protein interaction and binding affinity prediction." ;
+    sc:featureList edam:operation_2492,
+        edam:operation_3094,
+        edam:operation_3938 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "BACPI" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/CSUBioGroup/BACPI" .
+
 <https://bio.tools/bacpipe> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0621,
@@ -100374,7 +87569,7 @@ In addition, multiple sequence alignments (MSAs) can be uploaded to scan the 'bi
     sc:url "https://github.com/wholeGenomeSequencingAnalysisPipeline/BacPipe" .
 
 <https://bio.tools/bacpp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0749,
@@ -100392,7 +87587,7 @@ In addition, multiple sequence alignments (MSAs) can be uploaded to scan the 'bi
     biotools:primaryContact "Contact form" .
 
 <https://bio.tools/bacterial-identification-gui> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3070,
@@ -100408,7 +87603,7 @@ In addition, multiple sequence alignments (MSAs) can be uploaded to scan the 'bi
     biotools:primaryContact "juntao jia" .
 
 <https://bio.tools/bacterial-load-quantification> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -100426,26 +87621,16 @@ In addition, multiple sequence alignments (MSAs) can be uploaded to scan the 'bi
     sc:url "https://www.mathworks.com/matlabcentral/fileexchange/61666-safire_olympus_ix81" ;
     biotools:primaryContact "Abigail Reens" .
 
-<https://bio.tools/bacterial_rna_sequencing> a sc:SoftwareApplication ;
-    sc:description "In recent years, high throughput sequencing of cDNA libraries (RNA-Seq) has emerged as a powerful technology for profiling gene expression, discovering previously unannotated genes, and mapping transcriptome architecture in a wide variety of bacterial species.  CD Genomics provides a fast, one-stop bacterial RNA sequencing solution from the quality control of sample to comprehensive data analysis. Please contact us for more information and a detailed quote." ;
-    sc:name "Bacterial RNA Sequencing" ;
-    sc:url "https://www.cd-genomics.com/Bacterial-RNA-Sequencing.html" .
-
-<https://bio.tools/bacterial_whole_genome_de_novo_sequencing> a sc:SoftwareApplication ;
-    sc:description "CD Genomics is providing PacBio Single Molecular Real-Time (SMRT) sequencing to increase your research method for bacterial whole genome sequencing. A comprehensive view of the bacterial genome, including genes, regulatory regions, IS elements, phage integration sites, and base modifications is vital to understanding key traits such as antibiotic resistance, virulence, and metabolism." ;
-    sc:name "Bacterial Whole Genome de novo Sequencing" ;
-    sc:url "https://www.cd-genomics.com/Bacterial-Whole-Genome-de-novo-Sequencing.html" .
-
 <https://bio.tools/bactgeneshow> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ] ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Nucleic acid sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0916" ;
-            sc:name "Gene report" ;
-            sc:sameAs "http://edamontology.org/data_0916" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0916" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Gene report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_3053 ;
@@ -100462,20 +87647,31 @@ In addition, multiple sequence alignments (MSAs) can be uploaded to scan the 'bi
     sc:url "http://genome.jouy.inra.fr/ssb/SHOW/" ;
     biotools:primaryContact "Pierre Nicolas" .
 
+<https://bio.tools/bacting> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_3070,
+        edam:topic_3314 ;
+    sc:citation <https://doi.org/10.21105/joss.02558> ;
+    sc:description "Bacting is an open-source platform for chemo- and bioinformatics based on Bioclipse that defines a number of common domain objects and wraps common functionality, providing a toolkit independent, scriptable solution to handle data from the life sciences. Like Bioclipse, Bacting is written in the Java language, making use in Java-derived languages like Groovy easy, but also accessible to Python. Deposition of the Bacting package on Maven Central allows it to be easily used in Groovy scripts with @Grab instructions." ;
+    sc:name "Bacting" ;
+    sc:softwareVersion "0.0.34" ;
+    sc:url "https://github.com/egonw/bacting" .
+
 <https://bio.tools/bactopia> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2091" ;
-            sc:name "Accession" ;
-            sc:sameAs "http://edamontology.org/data_2091" ],
+            sc:additionalType "http://edamontology.org/data_0925" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence assembly" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0925" ;
-            sc:name "Sequence assembly" ;
-            sc:sameAs "http://edamontology.org/data_0925" ],
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "DNA sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3494" ;
-            sc:name "DNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3494" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2091" ;
+            sc:encodingFormat "http://edamontology.org/format_1964" ;
+            sc:name "Accession" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:citation <https://doi.org/10.1128/mSystems.00190-20>,
         "pmcid:PMC7406220",
@@ -100496,8 +87692,23 @@ In addition, multiple sequence alignments (MSAs) can be uploaded to scan the 'bi
     sc:url "https://bactopia.github.io/" ;
     biotools:primaryContact <https://orcid.org/0000-0002-1350-9426> .
 
+<https://bio.tools/bacvacdb> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:citation <https://doi.org/10.1016/j.compbiomed.2022.106030>,
+        "pubmed:36084380" ;
+    sc:description "BacVacDB is a manually curated comprehensive database containing information of the vaccines for human bacterial diseases" ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "BacVacDB" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/bacvacdb/index.php> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/bacvacdb/index.php" .
+
 <https://bio.tools/bacwgstdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_2885,
@@ -100517,14 +87728,14 @@ In addition, multiple sequence alignments (MSAs) can be uploaded to scan the 'bi
 
 <https://bio.tools/bader> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2084" ;
-            sc:name "Nucleic acid report" ;
-            sc:sameAs "http://edamontology.org/data_2084" ] ;
+            sc:additionalType "http://edamontology.org/data_2084" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Nucleic acid report" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1772" ;
-            sc:name "Score" ;
-            sc:sameAs "http://edamontology.org/data_1772" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1772" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Score" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2269,
@@ -100544,7 +87755,7 @@ In addition, multiple sequence alignments (MSAs) can be uploaded to scan the 'bi
     biotools:primaryContact "Andreas Neudecker" .
 
 <https://bio.tools/badge> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2269,
@@ -100559,7 +87770,7 @@ In addition, multiple sequence alignments (MSAs) can be uploaded to scan the 'bi
     biotools:primaryContact "Prof Paola Sebastiani" .
 
 <https://bio.tools/badgerfilm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0611,
         edam:topic_0632,
@@ -100578,10 +87789,9 @@ In addition, multiple sequence alignments (MSAs) can be uploaded to scan the 'bi
 
 <https://bio.tools/badmedicine> a sc:SoftwareApplication ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3861" ;
-            sc:name "Electronic health record" ;
-            sc:sameAs "http://edamontology.org/data_3861" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3861" ;
+            sc:name "Electronic health record" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3063,
         edam:topic_3303 ;
@@ -100595,7 +87805,7 @@ In addition, multiple sequence alignments (MSAs) can be uploaded to scan the 'bi
     sc:url "https://github.com/HicServices/BadMedicine" .
 
 <https://bio.tools/badmut> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0199,
@@ -100616,7 +87826,7 @@ Our services require cookies to keep track of your submissions and find your res
     sc:url "http://score.generesearch.ru/services/badmut/" .
 
 <https://bio.tools/badregionfinder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0077,
@@ -100638,7 +87848,7 @@ Our services require cookies to keep track of your submissions and find your res
     biotools:primaryContact "Sarah Sandmann" .
 
 <https://bio.tools/badtrip> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0199 ;
@@ -100653,7 +87863,7 @@ Our services require cookies to keep track of your submissions and find your res
     biotools:primaryContact "Nicola De Maio" .
 
 <https://bio.tools/baerhunter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0659,
         edam:topic_3170 ;
@@ -100667,8 +87877,26 @@ Our services require cookies to keep track of your submissions and find your res
     sc:name "baerhunter" ;
     sc:url "https://github.com/irilenia/baerhunter" .
 
+<https://bio.tools/bafinder> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Desktop application" ;
+    sc:applicationSubCategory edam:topic_2815,
+        edam:topic_3412,
+        edam:topic_3520 ;
+    sc:citation <https://doi.org/10.1021/ACS.ANALCHEM.1C05648>,
+        "pubmed:35403420" ;
+    sc:description "BAFinder is a program developed for the unknown bile acid identification from LC-MS/MS data in both positive and negative modes." ;
+    sc:featureList edam:operation_3643,
+        edam:operation_3767 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "BAFinder" ;
+    sc:operatingSystem "Mac",
+        "Windows" ;
+    sc:url "https://bafinder.github.io/" .
+
 <https://bio.tools/bafregress> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3053,
         edam:topic_3516,
@@ -100682,7 +87910,7 @@ Our services require cookies to keep track of your submissions and find your res
     sc:url "http://genome.sph.umich.edu/wiki/BAFRegress" .
 
 <https://bio.tools/bagel> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0204,
@@ -100704,7 +87932,7 @@ Our services require cookies to keep track of your submissions and find your res
     biotools:primaryContact "A.J. van Heel" .
 
 <https://bio.tools/bagel2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0622,
@@ -100722,7 +87950,7 @@ Our services require cookies to keep track of your submissions and find your res
     biotools:primaryContact "A.J. van Heel" .
 
 <https://bio.tools/bagel2-bayesian> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_2640,
         edam:topic_3053,
@@ -100735,7 +87963,7 @@ Our services require cookies to keep track of your submissions and find your res
     sc:url "https://github.com/hart-lab/bagel" .
 
 <https://bio.tools/bagel3> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0121,
@@ -100756,7 +87984,7 @@ Our services require cookies to keep track of your submissions and find your res
     biotools:primaryContact "A.J. van Heel" .
 
 <https://bio.tools/bagel4> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3174 ;
@@ -100771,7 +87999,7 @@ Our services require cookies to keep track of your submissions and find your res
     biotools:primaryContact "Anne de Jong" .
 
 <https://bio.tools/baget> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0621,
@@ -100792,7 +88020,7 @@ Our services require cookies to keep track of your submissions and find your res
     biotools:primaryContact "Jacques Oberto" .
 
 <https://bio.tools/bagheera> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0203,
@@ -100812,7 +88040,7 @@ Our services require cookies to keep track of your submissions and find your res
     sc:url "http://www.motorprotein.de/bagheera" .
 
 <https://bio.tools/bagphenotype> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3053 ;
@@ -100826,7 +88054,7 @@ Our services require cookies to keep track of your submissions and find your res
     sc:url "http://valdarlab.unc.edu/bagphenotype.html" .
 
 <https://bio.tools/bagpipe> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3053 ;
@@ -100841,14 +88069,14 @@ Our services require cookies to keep track of your submissions and find your res
 
 <https://bio.tools/bags> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0928" ;
-            sc:name "Gene expression profile" ;
-            sc:sameAs "http://edamontology.org/data_0928" ] ;
+            sc:additionalType "http://edamontology.org/data_0928" ;
+            sc:encodingFormat "http://edamontology.org/format_2058" ;
+            sc:name "Gene expression profile" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1772" ;
-            sc:name "Score" ;
-            sc:sameAs "http://edamontology.org/data_1772" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1772" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Score" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203 ;
@@ -100866,7 +88094,7 @@ Our services require cookies to keep track of your submissions and find your res
     biotools:primaryContact "Alejandro Quiroz-Zarate" .
 
 <https://bio.tools/bags-barcode> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0654,
         edam:topic_3050,
@@ -100880,8 +88108,28 @@ Our services require cookies to keep track of your submissions and find your res
     sc:name "BAGS" ;
     sc:url "https://github.com/tadeu95/BAGS" .
 
+<https://bio.tools/bahama> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0089,
+        edam:topic_0202,
+        edam:topic_2269,
+        edam:topic_2840,
+        edam:topic_3378 ;
+    sc:citation <https://doi.org/10.1007/S40264-022-01208-W>,
+        "pubmed:35840802" ;
+    sc:description "Bayesian Hierarchical Analyses of MedDRA-coded Adverse Events (BAHAMA): A Bayesian hierarchical model for the detection of MedDRA coded adverse events in RCTs." ;
+    sc:featureList edam:operation_3435,
+        edam:operation_3436 ;
+    sc:license "Not licensed" ;
+    sc:name "BAHAMA" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/Alma-Revers/BAHAMA" .
+
 <https://bio.tools/bail-fda> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:citation <https://doi.org/10.1080/02786826.2014.975334> ;
     sc:description "Open source code for calculating bioaeosol deposition in lungs" ;
@@ -100896,7 +88144,7 @@ Our services require cookies to keep track of your submissions and find your res
     biotools:primaryContact "Suvajyoti Guha" .
 
 <https://bio.tools/bait> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0654,
@@ -100914,7 +88162,7 @@ Our services require cookies to keep track of your submissions and find your res
     sc:url "http://sourceforge.net/projects/bait/" .
 
 <https://bio.tools/bait-er> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_2269,
@@ -100930,7 +88178,7 @@ Our services require cookies to keep track of your submissions and find your res
     sc:url "https://github.com/mrborges23/Bait-ER" .
 
 <https://bio.tools/bakdrive> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_3174,
@@ -100949,26 +88197,26 @@ Our services require cookies to keep track of your submissions and find your res
 
 <https://bio.tools/bakta> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2914" ;
-            sc:name "Sequence features metadata" ;
-            sc:sameAs "http://edamontology.org/data_2914" ],
+            sc:additionalType "http://edamontology.org/data_0925" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence assembly" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0925" ;
-            sc:name "Sequence assembly" ;
-            sc:sameAs "http://edamontology.org/data_0925" ] ;
+            sc:additionalType "http://edamontology.org/data_2914" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Sequence features metadata" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2886" ;
-            sc:name "Protein sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2886" ],
+            sc:additionalType "http://edamontology.org/data_2886" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence record" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2887" ;
-            sc:name "Nucleic acid sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2887" ],
+            sc:additionalType "http://edamontology.org/data_1270" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Feature table" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1270" ;
-            sc:name "Feature table" ;
-            sc:sameAs "http://edamontology.org/data_1270" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2887" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Nucleic acid sequence record" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -100990,12 +88238,12 @@ Our services require cookies to keep track of your submissions and find your res
         <https://github.com/oschwengers/bakta/blob/main/CODE_OF_CONDUCT.md>,
         <https://github.com/oschwengers/bakta/blob/main/CONTRIBUTION.md>,
         <https://github.com/oschwengers/bakta/blob/main/README.md> ;
-    sc:softwareVersion "v1.3.3" ;
+    sc:softwareVersion "v1.5.0" ;
     sc:url "https://github.com/oschwengers/bakta" ;
     biotools:primaryContact <https://orcid.org/0000-0003-4216-2721> .
 
 <https://bio.tools/balas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0130,
@@ -101012,7 +88260,7 @@ Our services require cookies to keep track of your submissions and find your res
     sc:url "https://balas.app" .
 
 <https://bio.tools/balbes> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_1317 ;
     sc:citation <https://doi.org/10.1107/S0907444907050172> ;
@@ -101028,7 +88276,7 @@ Our services require cookies to keep track of your submissions and find your res
     sc:url "https://www2.mrc-lmb.cam.ac.uk/groups/murshudov/content/balbes/balbes.html" .
 
 <https://bio.tools/balboa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0219,
@@ -101045,7 +88293,7 @@ Our services require cookies to keep track of your submissions and find your res
     biotools:primaryContact "Kenneth Bryan" .
 
 <https://bio.tools/bald> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_2885,
@@ -101063,14 +88311,14 @@ Our services require cookies to keep track of your submissions and find your res
 
 <https://bio.tools/baldr> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3495" ;
-            sc:name "RNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3495" ] ;
+            sc:additionalType "http://edamontology.org/data_3495" ;
+            sc:encodingFormat "http://edamontology.org/format_2182" ;
+            sc:name "RNA sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2082" ;
-            sc:name "Matrix" ;
-            sc:sameAs "http://edamontology.org/data_2082" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2082" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Matrix" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_2830,
         edam:topic_3170 ;
@@ -101087,7 +88335,7 @@ Our services require cookies to keep track of your submissions and find your res
     sc:url "https://www.bosingerlab.com/baldr/" .
 
 <https://bio.tools/bali-phy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3293 ;
@@ -101107,7 +88355,7 @@ Our services require cookies to keep track of your submissions and find your res
     sc:url "http://www.bali-phy.org/" .
 
 <https://bio.tools/ball-snpgp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0130,
@@ -101122,7 +88370,7 @@ Our services require cookies to keep track of your submissions and find your res
     sc:url "http://www.ccb.uni-saarland.de/?page_id=1127" .
 
 <https://bio.tools/ballaxy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0091,
@@ -101143,7 +88391,7 @@ Our services require cookies to keep track of your submissions and find your res
     sc:url "https://ball-project.org/ballaxy/" .
 
 <https://bio.tools/ballgown> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -101164,7 +88412,7 @@ Our services require cookies to keep track of your submissions and find your res
     biotools:primaryContact "Jack Fu" .
 
 <https://bio.tools/balrog> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0114,
         edam:topic_0203,
         edam:topic_0621,
@@ -101181,14 +88429,12 @@ Our services require cookies to keep track of your submissions and find your res
 
 <https://bio.tools/bam-lorenz-coverage> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:name "Sequence alignment" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2534" ;
-            sc:name "Sequence attribute" ;
-            sc:sameAs "http://edamontology.org/data_2534" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2534" ;
+            sc:name "Sequence attribute" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "Extract and plot Lorenz and Coverage stats directly derived from bam files" ;
     sc:featureList edam:operation_0258 ;
     sc:name "bam-lorenz-coverage" ;
@@ -101197,10 +88443,10 @@ Our services require cookies to keep track of your submissions and find your res
 
 <https://bio.tools/bam-readcount> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1916" ;
-            sc:name "Alignment" ;
-            sc:sameAs "http://edamontology.org/data_1916" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1916" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description """The purpose of this program is to generate metrics at single nucleotide positions.
 There are number of metrics generated which can be useful for filtering out false positive calls.
 Help is currently available on the commandline if you do not supply the program
@@ -101211,22 +88457,22 @@ any arguments.""" ;
 
 <https://bio.tools/bam2fastq> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ] ;
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Sequence trace" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1932" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1932" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1932" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3071,
@@ -101247,14 +88493,14 @@ any arguments.""" ;
 
 <https://bio.tools/bam2roi> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0160,
@@ -101274,14 +88520,14 @@ any arguments.""" ;
 
 <https://bio.tools/bam_to_bigwig> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ] ;
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Sequence trace" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_3006" ;
+            sc:name "Annotation track" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:citation <https://doi.org/10.1093/nar/gkw343>,
@@ -101299,14 +88545,14 @@ any arguments.""" ;
 
 <https://bio.tools/bam_to_sam> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ] ;
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Sequence trace" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
+            sc:name "Sequence trace" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:citation <https://doi.org/10.1093/nar/gkw343>,
@@ -101324,18 +88570,18 @@ any arguments.""" ;
 
 <https://bio.tools/bam_to_sam_parallel> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btp352>,
@@ -101353,7 +88599,7 @@ any arguments.""" ;
     biotools:primaryContact "Galaxy Support Team" .
 
 <https://bio.tools/bambino> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0092,
@@ -101375,7 +88621,7 @@ any arguments.""" ;
     biotools:primaryContact "National Cancer Institute" .
 
 <https://bio.tools/bambus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0622,
@@ -101392,7 +88638,7 @@ any arguments.""" ;
     biotools:primaryContact "Info CBCB" .
 
 <https://bio.tools/bamfa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2269,
         edam:topic_3407 ;
@@ -101407,7 +88653,7 @@ any arguments.""" ;
     sc:url "http://github.com/markusheinonen/bamfa" .
 
 <https://bio.tools/bamhash> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3071,
@@ -101421,7 +88667,7 @@ any arguments.""" ;
     sc:url "https://github.com/DecodeGenetics/BamHash" .
 
 <https://bio.tools/bamkit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:description "Bamkit is a collection of tools for common BAM file manipulations" ;
@@ -101431,7 +88677,7 @@ any arguments.""" ;
     sc:url "https://github.com/hall-lab/bamkit" .
 
 <https://bio.tools/bamm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_3169 ;
@@ -101449,7 +88695,7 @@ Discovery of regulatory motifs with higher-order Bayesian Markov Models (BaMMs)"
     sc:url "https://bammmotif.mpibpc.mpg.de" .
 
 <https://bio.tools/bammds> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3053,
@@ -101464,7 +88710,7 @@ Discovery of regulatory motifs with higher-order Bayesian Markov Models (BaMMs)"
     sc:url "http://dna.ku.dk/~sapfo/bammds.html" .
 
 <https://bio.tools/bamorc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0593,
         edam:topic_0749,
@@ -101482,7 +88728,7 @@ Discovery of regulatory motifs with higher-order Bayesian Markov Models (BaMMs)"
     sc:url "https://moseleybioinformaticslab.github.io/BaMORC/index.html" .
 
 <https://bio.tools/bamscale> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -101504,7 +88750,7 @@ Discovery of regulatory motifs with higher-order Bayesian Markov Models (BaMMs)"
     sc:url "https://github.com/ncbi/BAMscale" .
 
 <https://bio.tools/bamseek> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3308 ;
@@ -101519,7 +88765,7 @@ Discovery of regulatory motifs with higher-order Bayesian Markov Models (BaMMs)"
     biotools:primaryContact "Bamseek issues" .
 
 <https://bio.tools/bamsi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3168,
         edam:topic_3574 ;
@@ -101537,14 +88783,14 @@ Discovery of regulatory motifs with higher-order Bayesian Markov Models (BaMMs)"
 
 <https://bio.tools/bamsignals> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1383" ;
-            sc:name "Sequence alignment (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1383" ] ;
+            sc:additionalType "http://edamontology.org/data_1383" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Sequence alignment (nucleic acid)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0867" ;
-            sc:name "Sequence alignment report" ;
-            sc:sameAs "http://edamontology.org/data_0867" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0867" ;
+            sc:encodingFormat "http://edamontology.org/format_1921" ;
+            sc:name "Sequence alignment report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -101563,7 +88809,7 @@ Discovery of regulatory motifs with higher-order Bayesian Markov Models (BaMMs)"
     biotools:primaryContact "Alessandro Mammana" .
 
 <https://bio.tools/bamsnap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAA1101>,
@@ -101579,22 +88825,22 @@ Discovery of regulatory motifs with higher-order Bayesian Markov Models (BaMMs)"
 
 <https://bio.tools/bamstats> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ] ;
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Sequence trace" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_2269,
@@ -101613,27 +88859,38 @@ Discovery of regulatory motifs with higher-order Bayesian Markov Models (BaMMs)"
 
 <https://bio.tools/bamtocov> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1383" ;
-            sc:name "Nucleic acid sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_1383" ] ;
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_3003" ;
+            sc:name "Annotation track" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1383" ;
+            sc:encodingFormat "http://edamontology.org/format_3462" ;
+            sc:name "Nucleic acid sequence alignment" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_3583" ;
+            sc:name "Annotation track" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
-    sc:citation <https://doi.org/10.1101/2021.11.12.466787> ;
+    sc:author <https://orcid.org/0000-0003-0160-9312> ;
+    sc:citation <https://doi.org/10.1093/bioinformatics/btac125>,
+        <https://doi.org/10.1101/2021.11.12.466787>,
+        "pmcid:PMC9048650",
+        "pubmed:35199151" ;
     sc:description "Tools to extract coverage informations from BAM (and CRAM) files, based on the covtobed algorithm that supports stranded coverage and physical coverage, input from streams and uses a memory-efficient algorithm." ;
     sc:featureList edam:operation_0260 ;
     sc:license "MIT" ;
     sc:name "bamtocov" ;
     sc:operatingSystem "Linux",
         "Mac" ;
-    sc:softwareVersion "2.5.0" ;
-    sc:url "https://telatin.github.io/bamtocov/" .
+    sc:softwareVersion "2.5.0",
+        "2.7.0",
+        "2.8.0" ;
+    sc:url "https://telatin.github.io/bamtocov/" ;
+    biotools:primaryContact <https://orcid.org/0000-0001-7619-281X> .
 
 <https://bio.tools/bamtools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3071,
@@ -101652,7 +88909,7 @@ Discovery of regulatory motifs with higher-order Bayesian Markov Models (BaMMs)"
     biotools:primaryContact "Derek Barnett" .
 
 <https://bio.tools/bamutil> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1101/gr.176552.114> ;
@@ -101667,7 +88924,7 @@ Discovery of regulatory motifs with higher-order Bayesian Markov Models (BaMMs)"
     biotools:primaryContact "Mary Kate Wing" .
 
 <https://bio.tools/bamview> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1093/bib/bbr073> ;
@@ -101684,18 +88941,15 @@ Discovery of regulatory motifs with higher-order Bayesian Markov Models (BaMMs)"
 
 <https://bio.tools/banana> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ],
+            sc:additionalType "http://edamontology.org/data_1590" ;
+            sc:name "DNA base trimer roll angles data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1590" ;
-            sc:name "DNA base trimer roll angles data" ;
-            sc:sameAs "http://edamontology.org/data_1590" ] ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0912" ;
-            sc:name "Nucleic acid property" ;
-            sc:sameAs "http://edamontology.org/data_0912" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0912" ;
+            sc:name "Nucleic acid property" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0097 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -101725,7 +88979,7 @@ Discovery of regulatory motifs with higher-order Bayesian Markov Models (BaMMs)"
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/banana.html" .
 
 <https://bio.tools/band_dyn_prog> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:citation <https://doi.org/10.1186/s12859-018-2228-9> ;
@@ -101742,10 +88996,9 @@ Discovery of regulatory motifs with higher-order Bayesian Markov Models (BaMMs)"
 
 <https://bio.tools/bandage> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0925" ;
-            sc:name "Sequence assembly" ;
-            sc:sameAs "http://edamontology.org/data_0925" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0925" ;
+            sc:name "Sequence assembly" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0622 ;
@@ -101771,8 +89024,32 @@ Discovery of regulatory motifs with higher-order Bayesian Markov Models (BaMMs)"
     biotools:primaryContact "Australia",
         "Ryan Wick" .
 
+<https://bio.tools/bandar_togel_online_singapore_4d_deposit_dana_terpercaya> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:description "Daftar bandar togel online resmi pasaran togel singapore pools 4d sgp 49 dan dapat bonus welcome terbesar dengan hadiah bettingan full" ;
+    sc:name "Bandar Togel Online Singapore 4D Deposit Dana Terpercaya" ;
+    sc:url "https://a1togelslot.net/" .
+
+<https://bio.tools/bandar_togel_online_singapore_4d_sgp_49_terpercaya> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:description "Daftar bandar togel online resmi pasaran togel singapore pools 4d sgp 49 dan dapat bonus welcome terbesar dengan hadiah bettingan full" ;
+    sc:name "Bandar Togel Online Singapore 4D Sgp 49 Terpercaya" ;
+    sc:url "http://a1slottogel.org/" .
+
+<https://bio.tools/bandar_togel_online_singapore_4d_terpercaya> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:description "A1slottogel adalah bandar togel online resmi pasaran togel singapore pools 4d terpercaya, menyediakan bonus new member sebesar 10%" ;
+    sc:name "Bandar Togel Online Singapore 4D Terpercaya" ;
+    sc:url "https://datanomortogel.com/" .
+
+<https://bio.tools/bandar_togel_online_singapore_pools_4d_terpercaya> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:description "Daftar bandar togel online resmi pasaran togel singapore pools 4d sgp 49 dan dapat bonus welcome terbesar dengan hadiah bettingan full" ;
+    sc:name "Bandar Togel Online Singapore Pools 4D Terpercaya" ;
+    sc:url "https://singapore49.blogspot.com/" .
+
 <https://bio.tools/bandit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0154,
@@ -101790,7 +89067,7 @@ Discovery of regulatory motifs with higher-order Bayesian Markov Models (BaMMs)"
     sc:url "https://bandit.uni-mainz.de" .
 
 <https://bio.tools/bankit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3168,
@@ -101815,7 +89092,7 @@ Discovery of regulatory motifs with higher-order Bayesian Markov Models (BaMMs)"
     biotools:primaryContact "Eric W. Sayers" .
 
 <https://bio.tools/banns> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2885,
@@ -101832,7 +89109,7 @@ Discovery of regulatory motifs with higher-order Bayesian Markov Models (BaMMs)"
     sc:url "https://github.com/lcrawlab/BANNs" .
 
 <https://bio.tools/banocc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269 ;
     sc:citation <https://doi.org/10.1371/journal.pcbi.1005852>,
@@ -101853,86 +89130,86 @@ Discovery of regulatory motifs with higher-order Bayesian Markov Models (BaMMs)"
 
 <https://bio.tools/bar> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0982" ;
-            sc:name "Molecule identifier" ;
-            sc:sameAs "http://edamontology.org/data_0982" ],
+            sc:additionalType "http://edamontology.org/data_1179" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "NCBI taxonomy ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1138" ;
-            sc:name "Pfam accession number" ;
-            sc:sameAs "http://edamontology.org/data_1138" ],
+            sc:additionalType "http://edamontology.org/data_3021" ;
+            sc:encodingFormat "http://edamontology.org/format_1964" ;
+            sc:name "UniProt accession" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1179" ;
-            sc:name "NCBI taxonomy ID" ;
-            sc:sameAs "http://edamontology.org/data_1179" ],
+            sc:additionalType "http://edamontology.org/data_0982" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Molecule identifier" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1176" ;
-            sc:name "GO concept ID" ;
-            sc:sameAs "http://edamontology.org/data_1176" ],
+            sc:additionalType "http://edamontology.org/data_1179" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "NCBI taxonomy ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1127" ;
-            sc:name "PDB ID" ;
-            sc:sameAs "http://edamontology.org/data_1127" ],
+            sc:additionalType "http://edamontology.org/data_1179" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "NCBI taxonomy ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1179" ;
-            sc:name "NCBI taxonomy ID" ;
-            sc:sameAs "http://edamontology.org/data_1179" ],
+            sc:additionalType "http://edamontology.org/data_2974" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence (raw)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3021" ;
-            sc:name "UniProt accession" ;
-            sc:sameAs "http://edamontology.org/data_3021" ],
+            sc:additionalType "http://edamontology.org/data_1138" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Pfam accession number" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2974" ;
-            sc:name "Protein sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_2974" ],
+            sc:additionalType "http://edamontology.org/data_1176" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "GO concept ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0968" ;
-            sc:name "Keyword" ;
-            sc:sameAs "http://edamontology.org/data_0968" ],
+            sc:additionalType "http://edamontology.org/data_0968" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Keyword" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1179" ;
-            sc:name "NCBI taxonomy ID" ;
-            sc:sameAs "http://edamontology.org/data_1179" ] ;
+            sc:additionalType "http://edamontology.org/data_1127" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "PDB ID" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ],
+            sc:additionalType "http://edamontology.org/data_3028" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Taxonomy" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1245" ;
-            sc:name "Sequence cluster (protein)" ;
-            sc:sameAs "http://edamontology.org/data_1245" ],
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_3464" ;
+            sc:name "Report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1176" ;
-            sc:name "GO concept ID" ;
-            sc:sameAs "http://edamontology.org/data_1176" ],
+            sc:additionalType "http://edamontology.org/data_1245" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Sequence cluster (protein)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1245" ;
-            sc:name "Sequence cluster (protein)" ;
-            sc:sameAs "http://edamontology.org/data_1245" ],
+            sc:additionalType "http://edamontology.org/data_1176" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "GO concept ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ],
+            sc:additionalType "http://edamontology.org/data_1245" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Sequence cluster (protein)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3028" ;
-            sc:name "Taxonomy" ;
-            sc:sameAs "http://edamontology.org/data_3028" ],
+            sc:additionalType "http://edamontology.org/data_3028" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Taxonomy" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1245" ;
-            sc:name "Sequence cluster (protein)" ;
-            sc:sameAs "http://edamontology.org/data_1245" ],
+            sc:additionalType "http://edamontology.org/data_1245" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Sequence cluster (protein)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1245" ;
-            sc:name "Sequence cluster (protein)" ;
-            sc:sameAs "http://edamontology.org/data_1245" ],
+            sc:additionalType "http://edamontology.org/data_1245" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Sequence cluster (protein)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1245" ;
-            sc:name "Sequence cluster (protein)" ;
-            sc:sameAs "http://edamontology.org/data_1245" ],
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_3464" ;
+            sc:name "Report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3028" ;
-            sc:name "Taxonomy" ;
-            sc:sameAs "http://edamontology.org/data_3028" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1245" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Sequence cluster (protein)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0123,
@@ -101966,14 +89243,14 @@ Discovery of regulatory motifs with higher-order Bayesian Markov Models (BaMMs)"
 
 <https://bio.tools/bar-plus> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3021" ;
-            sc:name "UniProt accession" ;
-            sc:sameAs "http://edamontology.org/data_3021" ] ;
+            sc:additionalType "http://edamontology.org/data_3021" ;
+            sc:encodingFormat "http://edamontology.org/format_1964" ;
+            sc:name "UniProt accession" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0123,
@@ -102000,7 +89277,7 @@ This is a legacy version, please refer to https://bio.tools/bar for the latest r
     biotools:primaryContact "Giuseppe Profiti" .
 
 <https://bio.tools/bar-seq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0108,
@@ -102021,14 +89298,12 @@ This is a legacy version, please refer to https://bio.tools/bar for the latest r
 
 <https://bio.tools/barc> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0968" ;
-            sc:name "Keyword" ;
-            sc:sameAs "http://edamontology.org/data_0968" ] ;
+            sc:additionalType "http://edamontology.org/data_0968" ;
+            sc:name "Keyword" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2337" ;
-            sc:name "Resource metadata" ;
-            sc:sameAs "http://edamontology.org/data_2337" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2337" ;
+            sc:name "Resource metadata" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_3070 ;
     sc:citation <https://doi.org/10.1038/ejhg.2014.235> ;
@@ -102039,7 +89314,7 @@ This is a legacy version, please refer to https://bio.tools/bar for the latest r
     sc:url "http://barcdb.se/" .
 
 <https://bio.tools/barcod> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0084,
@@ -102056,7 +89331,7 @@ This is a legacy version, please refer to https://bio.tools/bar for the latest r
     sc:url "http://wwwabi.snv.jussieu.fr/public/Barcod/" .
 
 <https://bio.tools/barcode_generator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0157,
         edam:topic_3168,
@@ -102075,7 +89350,7 @@ This is a legacy version, please refer to https://bio.tools/bar for the latest r
     biotools:primaryContact "Support" .
 
 <https://bio.tools/barcoder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0632,
         edam:topic_3168,
         edam:topic_3452,
@@ -102090,7 +89365,7 @@ This is a legacy version, please refer to https://bio.tools/bar for the latest r
     sc:url "https://github.com/ECBCgit/Barcoder" .
 
 <https://bio.tools/barcodetrackr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Web application" ;
     sc:applicationSubCategory edam:topic_2229,
@@ -102108,7 +89383,7 @@ This is a legacy version, please refer to https://bio.tools/bar for the latest r
     sc:url "https://dunbarlabNIH.github.io/barcodetrackR" .
 
 <https://bio.tools/barcosel> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3168 ;
@@ -102124,7 +89399,7 @@ This is a legacy version, please refer to https://bio.tools/bar for the latest r
     biotools:primaryContact "Panu Somervuo" .
 
 <https://bio.tools/barcrawl_bartab> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0632,
@@ -102144,7 +89419,7 @@ This is a legacy version, please refer to https://bio.tools/bar for the latest r
     biotools:primaryContact "Daniel N. Frank" .
 
 <https://bio.tools/bardensr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3308,
         edam:topic_3382,
@@ -102160,7 +89435,7 @@ This is a legacy version, please refer to https://bio.tools/bar for the latest r
     sc:url "https://github.com/jacksonloper/bardensr" .
 
 <https://bio.tools/bareb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_2269,
@@ -102175,8 +89450,32 @@ This is a legacy version, please refer to https://bio.tools/bar for the latest r
     sc:name "BAREB" ;
     sc:url "https://cran.r-project.org/package=BAREB" .
 
+<https://bio.tools/baredsc> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library",
+        "Script" ;
+    sc:applicationSubCategory edam:topic_2269,
+        edam:topic_3170,
+        edam:topic_3308,
+        edam:topic_3512,
+        edam:topic_3934 ;
+    sc:citation <https://doi.org/10.1186/S12859-021-04507-8>,
+        "pmcid:PMC8756634",
+        "pubmed:35021985" ;
+    sc:description "The baredSC (Bayesian Approach to Retreive Expression Distribution of Single Cell) is a tool that uses a Monte-Carlo Markov Chain to estimate a confidence interval on the probability density function (PDF) of expression of one or two genes from single-cell RNA-seq data." ;
+    sc:featureList edam:operation_2422,
+        edam:operation_3223,
+        edam:operation_3463 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "baredSC" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/lldelisle/baredSC" .
+
 <https://bio.tools/barleynet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0602,
@@ -102194,7 +89493,7 @@ This is a legacy version, please refer to https://bio.tools/bar for the latest r
     sc:url "https://www.inetbio.org/barleynet" .
 
 <https://bio.tools/barleyvardb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0632,
         edam:topic_2885,
@@ -102213,7 +89512,7 @@ This is a legacy version, please refer to https://bio.tools/bar for the latest r
     sc:url "http://146.118.64.11/BarleyVar" .
 
 <https://bio.tools/barnacle> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0097 ;
     sc:citation <https://doi.org/10.1371/journal.pcbi.1000406> ;
@@ -102230,7 +89529,7 @@ This is a legacy version, please refer to https://bio.tools/bar for the latest r
     biotools:primaryContact "Thomas Hamelryck" .
 
 <https://bio.tools/barracuda> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation "pubmed:22244497" ;
@@ -102245,15 +89544,16 @@ This is a legacy version, please refer to https://bio.tools/bar for the latest r
 
 <https://bio.tools/barrnap> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3494" ;
-            sc:name "DNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3494" ] ;
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "DNA sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
-    sc:additionalType "Command-line tool" ;
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:encodingFormat "http://edamontology.org/format_1975" ;
+            sc:name "Sequence features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Web application" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0622 ;
     sc:author "Torsten Seemann" ;
@@ -102272,7 +89572,7 @@ This is a legacy version, please refer to https://bio.tools/bar for the latest r
         "Torsten Seemann" .
 
 <https://bio.tools/bars> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3053 ;
     sc:citation <https://doi.org/10.1186/1479-7364-1-1-20> ;
@@ -102284,7 +89584,7 @@ This is a legacy version, please refer to https://bio.tools/bar for the latest r
     sc:url "http://wpicr.wpic.pitt.edu/WPICCompGen/bars.htm" .
 
 <https://bio.tools/bart> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0749,
@@ -102300,7 +89600,7 @@ This is a legacy version, please refer to https://bio.tools/bar for the latest r
     biotools:primaryContact "Chongzhi Zang" .
 
 <https://bio.tools/bart-cancer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2640,
@@ -102316,7 +89616,7 @@ This is a legacy version, please refer to https://bio.tools/bar for the latest r
     sc:url "https://zanglab.github.io/bartcancer/" .
 
 <https://bio.tools/bart3d> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3169,
@@ -102332,7 +89632,7 @@ This is a legacy version, please refer to https://bio.tools/bar for the latest r
     sc:url "https://github.com/zanglab/bart3d" .
 
 <https://bio.tools/bartender> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0623,
@@ -102352,7 +89652,7 @@ This is a legacy version, please refer to https://bio.tools/bar for the latest r
         "Song Wu" .
 
 <https://bio.tools/bartweb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0749,
@@ -102367,8 +89667,32 @@ This is a legacy version, please refer to https://bio.tools/bar for the latest r
     sc:name "BARTweb" ;
     sc:url "http://bartweb.org" .
 
+<https://bio.tools/barware> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library",
+        "Workflow" ;
+    sc:applicationSubCategory edam:topic_0622,
+        edam:topic_0769,
+        edam:topic_3170 ;
+    sc:citation <https://doi.org/10.1186/S12859-022-04620-2>,
+        "pmcid:PMC8962164",
+        "pubmed:35346022" ;
+    sc:description "A software tools for barcoded single-cell genomics" ;
+    sc:featureList edam:operation_3200,
+        edam:operation_3431,
+        edam:operation_3629,
+        edam:operation_3799,
+        edam:operation_3933 ;
+    sc:isAccessibleForFree true ;
+    sc:license "BSD-2-Clause" ;
+    sc:name "BarWare" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/AllenInstitute/BarWare-pipeline" .
+
 <https://bio.tools/bas-calc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3382,
@@ -102381,7 +89705,7 @@ This is a legacy version, please refer to https://bio.tools/bar for the latest r
     sc:url "https://www.breastsymmetry.com/" .
 
 <https://bio.tools/basdas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -102397,14 +89721,12 @@ This is a legacy version, please refer to https://bio.tools/bar for the latest r
 
 <https://bio.tools/base> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Gene expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ] ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:name "Gene expression data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Gene expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:name "Gene expression data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1186/1471-2105-10-330> ;
@@ -102420,7 +89742,7 @@ This is a legacy version, please refer to https://bio.tools/bar for the latest r
     sc:url "http://base.thep.lu.se" .
 
 <https://bio.tools/base-antibody> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0632,
         edam:topic_0804,
@@ -102433,7 +89755,7 @@ This is a legacy version, please refer to https://bio.tools/bar for the latest r
     sc:url "https://github.com/automatedSequencing/BASE" .
 
 <https://bio.tools/base-genomics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0769,
@@ -102446,7 +89768,7 @@ This is a legacy version, please refer to https://bio.tools/bar for the latest r
     sc:url "http://github.com/for-giobbe/BASE" .
 
 <https://bio.tools/base_pad> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_2269 ;
     sc:description "Base Pad is a windows based base sequence editor. Search, complement, XNA to amino acid,amino acid to XNA,3 to1 & 1to 3 letter code, invert, find ORF,statistics of bps,2bp palindromes" ;
@@ -102457,7 +89779,7 @@ This is a legacy version, please refer to https://bio.tools/bar for the latest r
     sc:url "http://www.bioinformatics.org/groups/?group_id=493" .
 
 <https://bio.tools/basecallqc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:description "This package provides tools to work with Illumina bcl2Fastq software.Prior to basecalling and demultiplexing using the bcl2Fastq software, basecallQC functions allow the user to update Illumina sample sheets from versions <= 1.8.9 to >= 2.1.7 standards, clean sample sheets of common problems such as invalid sample names and IDs, create read and index basemasks and the bcl2Fastq command." ;
@@ -102474,21 +89796,21 @@ This is a legacy version, please refer to https://bio.tools/bar for the latest r
     biotools:primaryContact "Thomas Carroll" .
 
 <https://bio.tools/basenumber> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "High performance of a GPU-accelerated variant calling tool in genome data analysis" ;
     sc:name "BaseNumber" ;
     sc:url "https://github.com/QZH2022/germline_flow" .
 
 <https://bio.tools/basespacer> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1383" ;
-            sc:name "Sequence alignment (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1383" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1383" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence alignment (nucleic acid)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -102508,8 +89830,25 @@ This is a legacy version, please refer to https://bio.tools/bar for the latest r
     sc:url "http://bioconductor.org/packages/release/bioc/html/BaseSpaceR.html" ;
     biotools:primaryContact "Jared O'Connell" .
 
+<https://bio.tools/bash-gn> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0625,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1007/S11325-022-02629-8>,
+        "pubmed:35482152" ;
+    sc:description "A new machine learning-derived questionnaire for screening obstructive sleep apnea." ;
+    sc:featureList edam:operation_3659 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Other" ;
+    sc:name "BASH-GN" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://c2ship.org/bash-gn" .
+
 <https://bio.tools/basic> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_3360,
         edam:topic_3382,
@@ -102526,7 +89865,7 @@ This is a legacy version, please refer to https://bio.tools/bar for the latest r
     biotools:primaryContact "Carsten Marr" .
 
 <https://bio.tools/basic4cseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -102548,14 +89887,14 @@ This is a legacy version, please refer to https://bio.tools/bar for the latest r
 
 <https://bio.tools/basic_assembly> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3495" ;
-            sc:name "RNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3495" ] ;
+            sc:additionalType "http://edamontology.org/data_3495" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "RNA sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_2830,
@@ -102574,7 +89913,7 @@ This is a legacy version, please refer to https://bio.tools/bar for the latest r
     biotools:primaryContact "Aly Azeem Khan" .
 
 <https://bio.tools/basics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2229,
@@ -102599,7 +89938,7 @@ This is a legacy version, please refer to https://bio.tools/bar for the latest r
         "Nils Eling" .
 
 <https://bio.tools/basicstarrseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -102619,7 +89958,7 @@ This is a legacy version, please refer to https://bio.tools/bar for the latest r
     biotools:primaryContact "Annika Buerger" .
 
 <https://bio.tools/basilisk> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2814 ;
     sc:citation <https://doi.org/10.1186/1471-2105-11-306> ;
@@ -102636,7 +89975,7 @@ This is a legacy version, please refer to https://bio.tools/bar for the latest r
     biotools:primaryContact "Thomas Hamelryck" .
 
 <https://bio.tools/bastion6> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0123,
@@ -102655,7 +89994,7 @@ This is a legacy version, please refer to https://bio.tools/bar for the latest r
         "Trevor Lithgow" .
 
 <https://bio.tools/bastionhub> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Bioinformatics portal" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0160,
@@ -102676,7 +90015,7 @@ Secretion systems are one of the key “weapons” used by bacteria to unleash a
     sc:url "http://bastionhub.erc.monash.edu/" .
 
 <https://bio.tools/basys> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0114,
         edam:topic_0154,
@@ -102699,7 +90038,7 @@ Secretion systems are one of the key “weapons” used by bacteria to unleash a
     biotools:primaryContact "Gary Van Domselaar" .
 
 <https://bio.tools/bat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script",
         "Suite",
         "Workflow" ;
@@ -102716,7 +90055,7 @@ Secretion systems are one of the key “weapons” used by bacteria to unleash a
     sc:url "http://www.bioinf.uni-leipzig.de/Software/BAT/" .
 
 <https://bio.tools/bat_detective> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_3474,
@@ -102734,7 +90073,7 @@ Secretion systems are one of the key “weapons” used by bacteria to unleash a
         "Oisin Mac Aodha" .
 
 <https://bio.tools/batcave> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_2269,
         edam:topic_3676 ;
@@ -102751,7 +90090,7 @@ This package is an implementation of the BATCAVE algorithm described in Mannakee
     sc:url "http://github.com/bmannakee/batcaver" .
 
 <https://bio.tools/batch-download-geo-data> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0091 ;
     sc:description "This file batch download files from NCBI GEO according to a list of URLs." ;
@@ -102764,8 +90103,27 @@ This package is an implementation of the BATCAVE algorithm described in Mannakee
     sc:url "https://www.mathworks.com/matlabcentral/fileexchange/43170-batch-download-geo-data-samples-series" ;
     biotools:primaryContact "Sisi Ma" .
 
+<https://bio.tools/batch-mask> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0610,
+        edam:topic_0769,
+        edam:topic_3382,
+        edam:topic_3474,
+        edam:topic_3500 ;
+    sc:citation <https://doi.org/10.1101/2021.11.12.468394> ;
+    sc:description """Batch-Mask is an automated mask R-CNN workflow to isolate non-standard biological specimens for color pattern analysis. 
+Batch-Mask utilizes a customized region-based convolutional neural network (R-CNN) model to generate masks of snakes in photographs.""" ;
+    sc:featureList edam:operation_3435,
+        edam:operation_3799,
+        edam:operation_3927 ;
+    sc:license "MIT" ;
+    sc:name "Batch-Mask" ;
+    sc:url "https://github.com/EMBiRLab/batch-mask" ;
+    biotools:primaryContact "Talia Y. Moore" .
+
 <https://bio.tools/batchbench> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -102782,7 +90140,7 @@ This package is an implementation of the BATCAVE algorithm described in Mannakee
     sc:url "https://github.com/cellgeni/batchbench" .
 
 <https://bio.tools/batchmap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3524 ;
@@ -102798,7 +90156,7 @@ This package is an implementation of the BATCAVE algorithm described in Mannakee
     biotools:primaryContact "Bastian Schiffthaler" .
 
 <https://bio.tools/batchqc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3168,
@@ -102821,7 +90179,7 @@ This package is an implementation of the BATCAVE algorithm described in Mannakee
     biotools:primaryContact "Solaiappan Manimaran" .
 
 <https://bio.tools/batchserver> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -102837,7 +90195,7 @@ This package is an implementation of the BATCAVE algorithm described in Mannakee
     sc:url "https://lifeinfo.shinyapps.io/batchserver/" .
 
 <https://bio.tools/batex> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0780 ;
@@ -102851,7 +90209,7 @@ This package is an implementation of the BATCAVE algorithm described in Mannakee
     sc:url "http://pgrc.ipk-gatersleben.de/batex/" .
 
 <https://bio.tools/batl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0153,
         edam:topic_2269,
@@ -102869,7 +90227,7 @@ This package is an implementation of the BATCAVE algorithm described in Mannakee
     biotools:primaryContact <https://orcid.org/0000-0001-7944-5800> .
 
 <https://bio.tools/batman> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3295 ;
     sc:citation "pubmed:18612301" ;
@@ -102883,7 +90241,7 @@ This package is an implementation of the BATCAVE algorithm described in Mannakee
         "William Astle" .
 
 <https://bio.tools/batman-scrna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_2229,
@@ -102896,7 +90254,7 @@ This package is an implementation of the BATCAVE algorithm described in Mannakee
     sc:url "https://github.com/mandricigor/batman" .
 
 <https://bio.tools/batmat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0219,
@@ -102913,7 +90271,7 @@ This package is an implementation of the BATCAVE algorithm described in Mannakee
     sc:url "http://imbatmat.com/" .
 
 <https://bio.tools/batmeth> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0654,
@@ -102929,7 +90287,7 @@ This package is an implementation of the BATCAVE algorithm described in Mannakee
     sc:url "https://code.google.com/p/batmeth/" .
 
 <https://bio.tools/bats> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application",
         "Library" ;
@@ -102945,20 +90303,8 @@ This package is an implementation of the BATCAVE algorithm described in Mannakee
     sc:softwareHelp <http://www.math.unipa.it/~raffaele/BATS/download/guide/BATS_User_Guide.pdf> ;
     sc:url "http://www.math.unipa.it/~raffaele/BATS/index.html" .
 
-<https://bio.tools/bats_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0659,
-        edam:topic_3170,
-        edam:topic_3512 ;
-    sc:citation <https://doi.org/10.1101/738526> ;
-    sc:description "> LOW CONFIDENCE! | > NAME (bats) SIMILAR TO (PUB. DIFFERENT) bio.tools/bats (BATS) | > CORRECT NAME OF TOOL COULD ALSO BE 'bat species', 'ncRNA' | A comprehensive annotation and differential expression analysis of short and long non-coding RNAs in 16 bat genomes | A comprehensive annotation and differential expression analysis of | short and long non-coding RNAs in 16 bat genomes | Nelly F Mostajo, Marie Lataretu, Sebastian Krautwurst, Florian Mock, Daniel Desiro, Kevin Lamkiewicz, Maximilian Collatz, Andreas Schoen, Friedemann Weber, Manja Marz and Martin Hölzer | If you use our data please cite: Mostajo, Nelly F., et al. \"A comprehensive annotation and differential expression analysis of short and long non-coding RNAs in 16 bat genomes.\" NAR Genomics and Bioinformatics 2.1 (2019): lqz006 | White-nose syndrome (WNS) caused by a psychrophilic fungus Pseudogymnoascus destructans in hibernating bats" ;
-    sc:featureList edam:operation_3192,
-        edam:operation_3216,
-        edam:operation_3792 ;
-    sc:name "bats_autogenerated" ;
-    sc:url "https://www.rna.uni-jena.de/supplements/bats/" .
-
 <https://bio.tools/baycann> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_2640,
@@ -102979,7 +90325,7 @@ This package is an implementation of the BATCAVE algorithm described in Mannakee
     sc:url "https://github.com/hjalal/BayCANN" .
 
 <https://bio.tools/bayesase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0625,
@@ -102998,7 +90344,7 @@ This package is an implementation of the BATCAVE algorithm described in Mannakee
     sc:url "https://github.com/McIntyre-Lab/BayesASE" .
 
 <https://bio.tools/bayesassnm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2269,
@@ -103013,7 +90359,7 @@ This package is an implementation of the BATCAVE algorithm described in Mannakee
     sc:url "http://www.rannala.org/?page_id=245" .
 
 <https://bio.tools/bayescall> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:citation "pubmed:19661376" ;
@@ -103030,7 +90376,7 @@ This package is an implementation of the BATCAVE algorithm described in Mannakee
         "Yun S. Song" .
 
 <https://bio.tools/bayescan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_2885,
@@ -103047,16 +90393,34 @@ This package is an implementation of the BATCAVE algorithm described in Mannakee
     sc:url "http://cmpg.unibe.ch/software/bayescan/" ;
     biotools:primaryContact "Matthieu Foll" .
 
+<https://bio.tools/bayesctdesign> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_2269,
+        edam:topic_3379 ;
+    sc:citation <https://doi.org/10.18637/JSS.V100.I21>,
+        "pmcid:PMC8715862",
+        "pubmed:34975350" ;
+    sc:description "An R Package for Bayesian Trial Design Using Historical Control Data." ;
+    sc:featureList edam:operation_2238 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "BayesCTDesign" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://CRAN.R-project.org/package=BayesCTDesign" .
+
 <https://bio.tools/bayesembler> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Sequence alignment" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2769" ;
-            sc:name "Transcript ID" ;
-            sc:sameAs "http://edamontology.org/data_2769" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2769" ;
+            sc:encodingFormat "http://edamontology.org/format_2306" ;
+            sc:name "Transcript ID" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0196,
@@ -103079,7 +90443,7 @@ This package is an implementation of the BATCAVE algorithm described in Mannakee
         "Lasse Maretty" .
 
 <https://bio.tools/bayesepimodels> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_2269 ;
     sc:description "This software tool is used for accessing the performance of different epidemiological models (including both growth and compartmental models) in a Bayesian framework." ;
@@ -103089,7 +90453,7 @@ This package is an implementation of the BATCAVE algorithm described in Mannakee
     sc:url "https://github.com/liqiwei2000/BayesEpiModels" .
 
 <https://bio.tools/bayesepimodels_webapp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2269 ;
     sc:description "We develop this web app to help local people assess both short- and long-term forecasts of COVID-19 across the United States at multiple levels. This has been done by implementing one time-series model (ARIMA), one compartmental models (basic SIR), and six classical growth models, which all yield satisfactory prediction results in the past and current pandemics at an early stage." ;
@@ -103098,7 +90462,7 @@ This package is an implementation of the BATCAVE algorithm described in Mannakee
     sc:url "https://qiwei.shinyapps.io/PredictCOVID19/" .
 
 <https://bio.tools/bayesfactorfmri> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3372,
         edam:topic_3384 ;
@@ -103111,7 +90475,7 @@ This package is an implementation of the BATCAVE algorithm described in Mannakee
     sc:url "https://github.com/hyemin-han/BayesFactorFMRI" .
 
 <https://bio.tools/bayesforest> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0610,
@@ -103130,7 +90494,7 @@ This package is an implementation of the BATCAVE algorithm described in Mannakee
     biotools:primaryContact "Ilya Potapov" .
 
 <https://bio.tools/bayesfst> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3053,
@@ -103145,8 +90509,24 @@ This package is an implementation of the BATCAVE algorithm described in Mannakee
     sc:url "http://www.reading.ac.uk/Statistics/genetics/software.html" ;
     biotools:primaryContact "D.J. Balding" .
 
+<https://bio.tools/bayesherg> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workbench" ;
+    sc:applicationSubCategory edam:topic_2275,
+        edam:topic_3336,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1093/BIB/BBAC211>,
+        "pubmed:35709752" ;
+    sc:description "BayeshERG : A Bayesian Graph Neural Network for predicting hERG blockers." ;
+    sc:featureList edam:operation_0478,
+        edam:operation_0479,
+        edam:operation_3927 ;
+    sc:license "GPL-3.0" ;
+    sc:name "BayeshERG" ;
+    sc:url "https://github.com/GIST-CSBL/BayeshERG" .
+
 <https://bio.tools/bayesian-adaptive-basis-algorithm-single-particle-reconstruction> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0611,
         edam:topic_3344 ;
@@ -103162,7 +90542,7 @@ This package is an implementation of the BATCAVE algorithm described in Mannakee
     biotools:primaryContact "Alp" .
 
 <https://bio.tools/bayesknockdown> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -103182,7 +90562,7 @@ This package is an implementation of the BATCAVE algorithm described in Mannakee
     biotools:primaryContact "William Chad Young" .
 
 <https://bio.tools/bayesmd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0080 ;
@@ -103202,7 +90582,7 @@ This package is an implementation of the BATCAVE algorithm described in Mannakee
         "Ole Winther" .
 
 <https://bio.tools/bayesmendel> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3053,
@@ -103218,7 +90598,7 @@ This package is an implementation of the BATCAVE algorithm described in Mannakee
     sc:url "http://bcb.dfci.harvard.edu/bayesmendel/software.php" .
 
 <https://bio.tools/bayesmix> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2269 ;
@@ -103234,7 +90614,7 @@ This package is an implementation of the BATCAVE algorithm described in Mannakee
     sc:url "http://bioinformatics.mdanderson.org/main/BayesMix:Overview" .
 
 <https://bio.tools/bayesmotif> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0140 ;
     sc:citation <https://doi.org/10.1186/1471-2105-11-S1-S66> ;
@@ -103250,7 +90630,7 @@ This package is an implementation of the BATCAVE algorithm described in Mannakee
     sc:url "http://mleg.cse.sc.edu/BayesMotif/" .
 
 <https://bio.tools/bayespeak> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3125,
@@ -103271,7 +90651,7 @@ This package is an implementation of the BATCAVE algorithm described in Mannakee
     biotools:primaryContact "Jonathan Cairns" .
 
 <https://bio.tools/bayespi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_2269,
@@ -103293,7 +90673,7 @@ This package is an implementation of the BATCAVE algorithm described in Mannakee
     biotools:primaryContact "Junbai Wang" .
 
 <https://bio.tools/bayessc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3053,
         edam:topic_3293,
@@ -103309,8 +90689,32 @@ This package is an implementation of the BATCAVE algorithm described in Mannakee
     sc:url "http://www.stanford.edu/group/hadlylab/ssc/index.html" ;
     biotools:primaryContact "Christian Anderson" .
 
+<https://bio.tools/bayessur> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0593,
+        edam:topic_0625,
+        edam:topic_3172,
+        edam:topic_3360 ;
+    sc:citation <https://doi.org/10.1111/RSSC.12490>,
+        "pmcid:PMC7612194",
+        "pubmed:35001978" ;
+    sc:description "A computationally efficient Bayesian seemingly unrelated regressions model for high-dimensional quantitative trait loci discovery." ;
+    sc:featureList edam:operation_3196,
+        edam:operation_3232,
+        edam:operation_3659,
+        edam:operation_3799 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "BayesSUR" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://cran.r-project.org/web/packages/BayesSUR/" .
+
 <https://bio.tools/bayestyper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_2885,
@@ -103329,7 +90733,7 @@ This package is an implementation of the BATCAVE algorithm described in Mannakee
         "Lasse Maretty" .
 
 <https://bio.tools/bayesynergy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0202,
         edam:topic_2269,
@@ -103346,8 +90750,29 @@ This package is an implementation of the BATCAVE algorithm described in Mannakee
     sc:url "https://github.com/ocbe-uio/bayesynergy" ;
     biotools:primaryContact <http://orcid.org/0000-0003-1317-7422> .
 
+<https://bio.tools/bayeszib> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_2269,
+        edam:topic_2815,
+        edam:topic_3500 ;
+    sc:citation <https://doi.org/10.1186/S12874-021-01427-2>,
+        "pmcid:PMC8667382",
+        "pubmed:34895155" ;
+    sc:description "Analysis of zero inflated dichotomous variables from a Bayesian perspective." ;
+    sc:featureList edam:operation_2426,
+        edam:operation_3435,
+        edam:operation_3659 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-2.0" ;
+    sc:name "bayesZIB" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://cran.r-project.org/package=bayesZIB" .
+
 <https://bio.tools/bayexer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3168 ;
@@ -103362,14 +90787,14 @@ This package is an implementation of the BATCAVE algorithm described in Mannakee
 
 <https://bio.tools/baynorm> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3112" ;
-            sc:name "Gene expression matrix" ;
-            sc:sameAs "http://edamontology.org/data_3112" ] ;
+            sc:additionalType "http://edamontology.org/data_3112" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Gene expression matrix" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3112" ;
-            sc:name "Gene expression matrix" ;
-            sc:sameAs "http://edamontology.org/data_3112" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3112" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Gene expression matrix" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3170,
@@ -103390,7 +90815,7 @@ This package is an implementation of the BATCAVE algorithm described in Mannakee
     biotools:primaryContact "Wenhao Tang" .
 
 <https://bio.tools/baypass> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3053,
@@ -103407,7 +90832,7 @@ This package is an implementation of the BATCAVE algorithm described in Mannakee
     biotools:primaryContact "Mathieu Gautier" .
 
 <https://bio.tools/baypr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0634,
@@ -103423,7 +90848,7 @@ This package is an implementation of the BATCAVE algorithm described in Mannakee
     sc:url "https://github.com/melishg/BayPR/" .
 
 <https://bio.tools/bayseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -103442,7 +90867,7 @@ This package is an implementation of the BATCAVE algorithm described in Mannakee
     biotools:primaryContact "Thomas J. Hardcastle" .
 
 <https://bio.tools/baysicle> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2229,
@@ -103459,7 +90884,7 @@ This package is an implementation of the BATCAVE algorithm described in Mannakee
     biotools:primaryContact <https://orcid.org/0000-0003-1734-817X> .
 
 <https://bio.tools/baysir> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3305,
@@ -103476,7 +90901,7 @@ This package is an implementation of the BATCAVE algorithm described in Mannakee
     sc:url "https://github.com/tianjianzhou/BaySIR" .
 
 <https://bio.tools/bayz> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3055 ;
     sc:citation <https://doi.org/10.1186/s12863-017-0491-9> ;
@@ -103494,18 +90919,18 @@ This package is an implementation of the BATCAVE algorithm described in Mannakee
 
 <https://bio.tools/bbcanalyzer> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1383" ;
-            sc:name "Sequence alignment (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1383" ] ;
+            sc:additionalType "http://edamontology.org/data_1383" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Sequence alignment (nucleic acid)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2166" ;
-            sc:name "Sequence composition plot" ;
-            sc:sameAs "http://edamontology.org/data_2166" ],
+            sc:additionalType "http://edamontology.org/data_2166" ;
+            sc:encodingFormat "http://edamontology.org/format_2921" ;
+            sc:name "Sequence composition plot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1383" ;
-            sc:name "Sequence alignment (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1383" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1383" ;
+            sc:encodingFormat "http://edamontology.org/format_2921" ;
+            sc:name "Sequence alignment (nucleic acid)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -103525,7 +90950,7 @@ This package is an implementation of the BATCAVE algorithm described in Mannakee
     biotools:primaryContact "Sarah Sandmann" .
 
 <https://bio.tools/bbear> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2830,
@@ -103543,14 +90968,12 @@ This package is an implementation of the BATCAVE algorithm described in Mannakee
 
 <https://bio.tools/bbknn> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3112" ;
-            sc:name "Gene expression matrix" ;
-            sc:sameAs "http://edamontology.org/data_3112" ] ;
+            sc:additionalType "http://edamontology.org/data_3112" ;
+            sc:name "Gene expression matrix" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3112" ;
-            sc:name "Gene expression matrix" ;
-            sc:sameAs "http://edamontology.org/data_3112" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3112" ;
+            sc:name "Gene expression matrix" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3308 ;
@@ -103569,7 +90992,7 @@ This package is an implementation of the BATCAVE algorithm described in Mannakee
     biotools:primaryContact "Sarah Teichmann" .
 
 <https://bio.tools/bbmap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_3168,
         edam:topic_3170,
@@ -103594,10 +91017,9 @@ This package is an implementation of the BATCAVE algorithm described in Mannakee
 
 <https://bio.tools/bbmri-eu_catalog> a sc:SoftwareApplication ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0957" ;
-            sc:name "Database metadata" ;
-            sc:sameAs "http://edamontology.org/data_0957" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0957" ;
+            sc:name "Database metadata" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_3337 ;
     sc:description "Database of collections of biomaterial and associated data subsumed under the umbrella of BBMRI-EU." ;
@@ -103613,10 +91035,9 @@ This package is an implementation of the BATCAVE algorithm described in Mannakee
 
 <https://bio.tools/bbmri-nl_catalog> a sc:SoftwareApplication ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0957" ;
-            sc:name "Database metadata" ;
-            sc:sameAs "http://edamontology.org/data_0957" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0957" ;
+            sc:name "Database metadata" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_3337 ;
     sc:citation <https://doi.org/10.1186/1471-2105-11-S12-S12> ;
@@ -103634,10 +91055,9 @@ This package is an implementation of the BATCAVE algorithm described in Mannakee
 
 <https://bio.tools/bbmri-portal> a sc:SoftwareApplication ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0957" ;
-            sc:name "Database metadata" ;
-            sc:sameAs "http://edamontology.org/data_0957" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0957" ;
+            sc:name "Database metadata" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_3337 ;
     sc:citation <https://doi.org/10.1089/bio.2016.0088> ;
@@ -103653,7 +91073,7 @@ This package is an implementation of the BATCAVE algorithm described in Mannakee
     biotools:primaryContact "Raffael Bild" .
 
 <https://bio.tools/bbppred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3068,
@@ -103668,8 +91088,28 @@ This package is an implementation of the BATCAVE algorithm described in Mannakee
     sc:url "http://BBPpred.xialab.info" ;
     biotools:primaryContact <http://orcid.org/0000-0003-3024-1705> .
 
+<https://bio.tools/bbppredict> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_3374,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.3389/FGENE.2022.845747>,
+        "pmcid:PMC9152268",
+        "pubmed:35656322" ;
+    sc:description "The BBPpredict tool is a predictor that can be used to foretell if your peptides might be blood-brain barrier penetrating peptide." ;
+    sc:featureList edam:operation_3936,
+        edam:operation_3937 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "BBPpredict" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://i.uestc.edu.cn/BBPpredict/cgi-bin/BBPpredict.pl" .
+
 <https://bio.tools/bbrowser> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2830,
@@ -103686,7 +91126,7 @@ This package is an implementation of the BATCAVE algorithm described in Mannakee
     sc:url "https://bioturing.com/bbrowser/download" .
 
 <https://bio.tools/bbsbayes> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_2269,
@@ -103705,14 +91145,14 @@ This package is an implementation of the BATCAVE algorithm described in Mannakee
 
 <https://bio.tools/bbseq> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3495" ;
-            sc:name "RNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3495" ] ;
+            sc:additionalType "http://edamontology.org/data_3495" ;
+            sc:encodingFormat "http://edamontology.org/format_1213" ;
+            sc:name "RNA sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0950" ;
-            sc:name "Mathematical model" ;
-            sc:sameAs "http://edamontology.org/data_0950" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0950" ;
+            sc:encodingFormat "http://edamontology.org/format_2032" ;
+            sc:name "Mathematical model" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2269,
@@ -103732,7 +91172,7 @@ This package is an implementation of the BATCAVE algorithm described in Mannakee
     biotools:primaryContact "Yi-Hui Zhou" .
 
 <https://bio.tools/bc-genexminer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -103751,7 +91191,7 @@ This package is an implementation of the BATCAVE algorithm described in Mannakee
     sc:url "http://bcgenex.ico.unicancer.fr" .
 
 <https://bio.tools/bc-store> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0622,
@@ -103765,7 +91205,7 @@ This package is an implementation of the BATCAVE algorithm described in Mannakee
     sc:url "https://store.genomecenter.ru/bc-store" .
 
 <https://bio.tools/bc_snpmax> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0199 ;
     sc:description "Database platform for managing molecular data (sequence variants and DNA array) with associated phenotypes and analyzing the data for QTL mapping." ;
@@ -103779,7 +91219,7 @@ This package is an implementation of the BATCAVE algorithm described in Mannakee
     sc:url "http://www.bcplatforms.com/" .
 
 <https://bio.tools/bcbio-nextgen> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0769 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btv061> ;
@@ -103803,7 +91243,7 @@ This package is an implementation of the BATCAVE algorithm described in Mannakee
     biotools:primaryContact "Brad Chapman" .
 
 <https://bio.tools/bcbiornaseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3308 ;
@@ -103820,7 +91260,7 @@ This package is an implementation of the BATCAVE algorithm described in Mannakee
     sc:url "http://bioinformatics.sph.harvard.edu/bcbioRNASeq/" .
 
 <https://bio.tools/bcbtoolkit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3304,
@@ -103837,7 +91277,7 @@ This package is an implementation of the BATCAVE algorithm described in Mannakee
     biotools:primaryContact "Michel Thiebaut de Schotten" .
 
 <https://bio.tools/bcdatabaser> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0632,
@@ -103859,7 +91299,7 @@ This package is an implementation of the BATCAVE algorithm described in Mannakee
     sc:url "https://bcdatabaser.molecular.eco" .
 
 <https://bio.tools/bce> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
@@ -103881,7 +91321,7 @@ This package is an implementation of the BATCAVE algorithm described in Mannakee
     sc:url "https://mmb.irbbarcelona.org/BCE" .
 
 <https://bio.tools/bceconsensus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
         edam:topic_3306 ;
@@ -103894,7 +91334,7 @@ This package is an implementation of the BATCAVE algorithm described in Mannakee
     sc:url "http://thalis.biol.uoa.gr/BCEconsensus/" .
 
 <https://bio.tools/bcepred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154 ;
     sc:citation <https://doi.org/10.1007/978-3-540-30220-9_16> ;
@@ -103905,18 +91345,18 @@ This package is an implementation of the BATCAVE algorithm described in Mannakee
         "Mac",
         "Windows" ;
     sc:softwareHelp <http://crdd.osdd.net/raghava/bcepred/bcepred_algorithm.html> ;
-    sc:url "http://www.imtech.res.in/raghava/bcepred/" .
+    sc:url "https://webs.iiitd.edu.in/raghava/bcepred/" .
 
 <https://bio.tools/bcf-tools-cat> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ] ;
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3020" ;
+            sc:name "Sequence variations" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3020" ;
+            sc:name "Sequence variations" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btp352>,
@@ -103935,14 +91375,14 @@ This package is an implementation of the BATCAVE algorithm described in Mannakee
 
 <https://bio.tools/bcf-tools-index> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ] ;
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3020" ;
+            sc:name "Sequence variations" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3020" ;
+            sc:name "Sequence variations" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3168 ;
@@ -103962,18 +91402,18 @@ This package is an implementation of the BATCAVE algorithm described in Mannakee
 
 <https://bio.tools/bcf_view_mpileup> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ],
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3020" ;
+            sc:name "Sequence variations" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence variations" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_3168 ;
@@ -103991,10 +91431,10 @@ This package is an implementation of the BATCAVE algorithm described in Mannakee
 
 <https://bio.tools/bcforms> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Protein structure" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library",
         "Web API",
@@ -104028,14 +91468,14 @@ BcForms includes a grammar for describing forms of macromolecular complexes comp
 
 <https://bio.tools/bcftools> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ] ;
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence variations" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence variations" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Suite" ;
     sc:applicationSubCategory edam:topic_0199,
@@ -104070,6 +91510,8 @@ BcForms includes a grammar for describing forms of macromolecular complexes comp
         "1.13",
         "1.14",
         "1.15",
+        "1.15.1",
+        "1.16",
         "1.2",
         "1.3",
         "1.3.1",
@@ -104084,18 +91526,18 @@ BcForms includes a grammar for describing forms of macromolecular complexes comp
 
 <https://bio.tools/bcftools_view> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3020" ;
+            sc:name "Sequence variations" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:citation <https://doi.org/10.1093/nar/gkw343>,
@@ -104113,7 +91555,7 @@ BcForms includes a grammar for describing forms of macromolecular complexes comp
     biotools:primaryContact "Galaxy Support Team" .
 
 <https://bio.tools/bcgene> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -104132,14 +91574,14 @@ BcForms includes a grammar for describing forms of macromolecular complexes comp
 
 <https://bio.tools/bcheck_rnpb> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3497" ;
-            sc:name "DNA sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_3497" ] ;
+            sc:additionalType "http://edamontology.org/data_3497" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "DNA sequence (raw)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3496" ;
-            sc:name "RNA sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_3496" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3496" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "RNA sequence (raw)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Database portal",
         "Web application" ;
@@ -104165,8 +91607,24 @@ BcForms includes a grammar for describing forms of macromolecular complexes comp
     sc:url "http://rna.tbi.univie.ac.at/bcheck/index.html" ;
     biotools:primaryContact <http://orcid.org/0000-0001-8683-7845> .
 
+<https://bio.tools/bcipep> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:citation <https://doi.org/10.1186/1471-2164-6-79>,
+        "pubmed:15921533" ;
+    sc:description """A database of b cell epitopes. 
+The prime/boost vaccine strategy has suggested that only immunodominant epitopes, rather than a large collection of defined epitopes with varying immunogenicity should be selected for vaccines.""" ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "bcipep" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/bcipep/index.html> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/bcipep/index.html" .
+
 <https://bio.tools/bcl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -104189,7 +91647,7 @@ BcForms includes a grammar for describing forms of macromolecular complexes comp
     biotools:primaryContact "Jens Meiler" .
 
 <https://bio.tools/bcl-conf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2275,
@@ -104206,7 +91664,7 @@ BcForms includes a grammar for describing forms of macromolecular complexes comp
     sc:url "http://meilerlab.org/bclconf" .
 
 <https://bio.tools/bcm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2259,
         edam:topic_2269,
@@ -104224,7 +91682,7 @@ BcForms includes a grammar for describing forms of macromolecular complexes comp
     biotools:primaryContact "Lodewyk F. A. Wessels" .
 
 <https://bio.tools/bcm_srchlausequtl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0108,
@@ -104244,7 +91702,7 @@ BcForms includes a grammar for describing forms of macromolecular complexes comp
     biotools:primaryContact "Randall F. Smith" .
 
 <https://bio.tools/bco-app> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3168,
@@ -104260,7 +91718,7 @@ BcForms includes a grammar for describing forms of macromolecular complexes comp
     sc:url "https://sbg.github.io/bco-app/" .
 
 <https://bio.tools/bcode> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3305,
@@ -104276,18 +91734,18 @@ BcForms includes a grammar for describing forms of macromolecular complexes comp
 
 <https://bio.tools/bcov> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ],
+            sc:additionalType "http://edamontology.org/data_1384" ;
+            sc:encodingFormat "http://edamontology.org/format_1984" ;
+            sc:name "Sequence alignment (protein)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1384" ;
-            sc:name "Sequence alignment (protein)" ;
-            sc:sameAs "http://edamontology.org/data_1384" ] ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Protein structure" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0906" ;
-            sc:name "Protein interaction data" ;
-            sc:sameAs "http://edamontology.org/data_0906" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0906" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Protein interaction data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_3474 ;
@@ -104304,7 +91762,7 @@ BcForms includes a grammar for describing forms of macromolecular complexes comp
     biotools:primaryContact "Castrense Savojardo" .
 
 <https://bio.tools/bcrank> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0749 ;
@@ -104321,7 +91779,7 @@ BcForms includes a grammar for describing forms of macromolecular complexes comp
     biotools:primaryContact "Adam Ameur" .
 
 <https://bio.tools/bcreval> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3168,
@@ -104338,7 +91796,7 @@ BcForms includes a grammar for describing forms of macromolecular complexes comp
     sc:url "https://github.com/hqyone/BCR_Evaluator" .
 
 <https://bio.tools/bcrgt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2640,
@@ -104357,7 +91815,7 @@ BcForms includes a grammar for describing forms of macromolecular complexes comp
     sc:url "http://publichealth.lsuhsc.edu/BCRgt.html" .
 
 <https://bio.tools/bcrocsurface> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0634,
@@ -104379,7 +91837,7 @@ BcForms includes a grammar for describing forms of macromolecular complexes comp
     biotools:primaryContact "Khanh To Duc" .
 
 <https://bio.tools/bcs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0654,
@@ -104399,7 +91857,7 @@ BcForms includes a grammar for describing forms of macromolecular complexes comp
     sc:url "https://github.com/MBoemo/bcs" .
 
 <https://bio.tools/bcseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0204,
@@ -104420,7 +91878,7 @@ BcForms includes a grammar for describing forms of macromolecular complexes comp
     biotools:primaryContact "Jiaxing Lin" .
 
 <https://bio.tools/bcseq_bias> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3308 ;
     sc:citation <https://doi.org/10.1093/nar/gky308> ;
@@ -104433,12 +91891,54 @@ BcForms includes a grammar for describing forms of macromolecular complexes comp
         "Windows" ;
     sc:url "http://www-rcf.usc.edu/~liangche/software.html" .
 
+<https://bio.tools/bcurve> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0654,
+        edam:topic_3295,
+        edam:topic_3518,
+        edam:topic_3674 ;
+    sc:citation <https://doi.org/10.1007/978-1-0716-1994-0_13>,
+        "pubmed:35505215" ;
+    sc:description "R package that can be used to detect differentially methylated CG sites and differentially methylated regions using a Bayesian smoothing curve method." ;
+    sc:featureList edam:operation_3206,
+        edam:operation_3207,
+        edam:operation_3809 ;
+    sc:license "Not licensed" ;
+    sc:name "BCurve" ;
+    sc:operatingSystem "Linux",
+        "Mac" ;
+    sc:url "https://www.asc.ohio-state.edu/statistics/statgen/SOFTWARE/BCurve/" .
+
+<https://bio.tools/bcyto> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0091,
+        edam:topic_0804,
+        edam:topic_2229,
+        edam:topic_2259,
+        edam:topic_3934 ;
+    sc:citation <https://doi.org/10.1016/J.MCP.2022.101848>,
+        "pubmed:35933055" ;
+    sc:description "BCyto is an open-source project that provides an user-friendly, high-performance interface for Flow Cytometry analysis in R." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_0560,
+        edam:operation_3935 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "BCyto" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/BonilhaCaio/BCyto" .
+
 <https://bio.tools/bdbm> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2080" ;
-            sc:name "Database search results" ;
-            sc:sameAs "http://edamontology.org/data_2080" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2080" ;
+            sc:name "Database search results" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_3071 ;
@@ -104460,7 +91960,7 @@ BcForms includes a grammar for describing forms of macromolecular complexes comp
     sc:url "http://www.sing-group.org/BDBM" .
 
 <https://bio.tools/bddb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_0659,
@@ -104477,7 +91977,7 @@ BcForms includes a grammar for describing forms of macromolecular complexes comp
     sc:url "http://t21omics.cngb.org" .
 
 <https://bio.tools/bdock> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2275 ;
     sc:citation <https://doi.org/10.1016/j.gene.2008.06.014> ;
@@ -104489,7 +91989,7 @@ BcForms includes a grammar for describing forms of macromolecular complexes comp
     sc:url "http://www.biotec.tu-dresden.de/~bhuang/bdock/" .
 
 <https://bio.tools/bdvis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0637,
         edam:topic_3050,
@@ -104506,7 +92006,7 @@ BcForms includes a grammar for describing forms of macromolecular complexes comp
     biotools:primaryContact "Vijay Barve" .
 
 <https://bio.tools/be-ff> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0108,
@@ -104525,7 +92025,7 @@ BcForms includes a grammar for describing forms of macromolecular complexes comp
     sc:url "http://danioffenlab.pythonanywhere.com/" .
 
 <https://bio.tools/beachmat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3170,
@@ -104543,7 +92043,7 @@ BcForms includes a grammar for describing forms of macromolecular complexes comp
     biotools:primaryContact "Aaron T. L. Lun" .
 
 <https://bio.tools/beacon> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0622,
@@ -104564,7 +92064,7 @@ BcForms includes a grammar for describing forms of macromolecular complexes comp
     biotools:primaryContact "Contact list" .
 
 <https://bio.tools/beacon_designer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0632 ;
     sc:description "Beacon Designer™ automates the design of real time primers and probes. It is used by molecular biologists worldwide to design successful real time PCR assays. It saves the time and the money involved in failed experiments. Beacon Designer™ is a flexible solution to your real time primer and probe design needs and pays for itself many times over." ;
@@ -104580,18 +92080,18 @@ BcForms includes a grammar for describing forms of macromolecular complexes comp
 
 <https://bio.tools/beaconlab_pscan> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2295" ;
-            sc:name "Gene ID" ;
-            sc:sameAs "http://edamontology.org/data_2295" ] ;
+            sc:additionalType "http://edamontology.org/data_2295" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Gene ID" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1276" ;
-            sc:name "Nucleic acid features" ;
-            sc:sameAs "http://edamontology.org/data_1276" ],
+            sc:additionalType "http://edamontology.org/data_2755" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Transcription factor name" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2755" ;
-            sc:name "Transcription factor name" ;
-            sc:sameAs "http://edamontology.org/data_2755" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1276" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Nucleic acid features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -104612,7 +92112,7 @@ BcForms includes a grammar for describing forms of macromolecular complexes comp
         "Giulio Pavesi" .
 
 <https://bio.tools/beaconplus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API",
         "Web service" ;
     sc:applicationSubCategory edam:topic_2533,
@@ -104630,7 +92130,7 @@ While not primarily documented for independent deployment, the Beacon+ code base
     biotools:primaryContact <https://orcid.org/0000-0002-9903-4248> .
 
 <https://bio.tools/beadarray> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3071,
@@ -104651,7 +92151,7 @@ While not primarily documented for independent deployment, the Beacon+ code base
     biotools:primaryContact <http://orcid.org/0000-0002-8853-9435> .
 
 <https://bio.tools/beadarraysnp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -104672,7 +92172,7 @@ While not primarily documented for independent deployment, the Beacon+ code base
     biotools:primaryContact "Jan Oosting" .
 
 <https://bio.tools/beaddatapackr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3365,
@@ -104693,7 +92193,7 @@ While not primarily documented for independent deployment, the Beacon+ code base
     biotools:primaryContact <http://orcid.org/0000-0002-7800-3848> .
 
 <https://bio.tools/beadfluct> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3306 ;
     sc:description "Monte-Carlo simulation to calculate position of micronsized particles in optical trap" ;
@@ -104707,7 +92207,7 @@ While not primarily documented for independent deployment, the Beacon+ code base
     biotools:primaryContact "Fabian Czerwinski" .
 
 <https://bio.tools/beadnet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3382,
@@ -104723,7 +92223,7 @@ While not primarily documented for independent deployment, the Beacon+ code base
     sc:url "https://bitbucket.org/t_scherr/beadnet" .
 
 <https://bio.tools/beads> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3169 ;
     sc:citation "pubmed:21646344" ;
@@ -104739,10 +92239,19 @@ While not primarily documented for independent deployment, the Beacon+ code base
         "Thomas Down" .
 
 <https://bio.tools/beagle> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3056 ;
-    sc:citation <https://doi.org/10.1086/521987> ;
+    sc:citation <https://doi.org/10.1016/j.ajhg.2015.11.020>,
+        <https://doi.org/10.1016/j.ajhg.2018.07.015>,
+        <https://doi.org/10.1016/j.ajhg.2021.08.005>,
+        <https://doi.org/10.1086/521987>,
+        "pmcid:PMC4716681",
+        "pmcid:PMC6128308",
+        "pmcid:PMC8551421",
+        "pubmed:26748515",
+        "pubmed:30100085",
+        "pubmed:34478634" ;
     sc:description "Beagle is a software package that performs genotype calling, genotype phasing, imputation of ungenotyped markers, and identity-by-descent segment detection." ;
     sc:featureList edam:operation_3454,
         edam:operation_3557 ;
@@ -104754,7 +92263,7 @@ While not primarily documented for independent deployment, the Beacon+ code base
     sc:url "https://faculty.washington.edu/browning/beagle/beagle.html" .
 
 <https://bio.tools/beagle-lib> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3293,
@@ -104776,7 +92285,7 @@ While not primarily documented for independent deployment, the Beacon+ code base
     biotools:primaryContact "Daniel L. Ayres" .
 
 <https://bio.tools/beam> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0099,
@@ -104793,20 +92302,8 @@ While not primarily documented for independent deployment, the Beacon+ code base
     biotools:primaryContact "Contact List",
         "Marco Pietrosanto" .
 
-<https://bio.tools/beam_propagation_method> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3382 ;
-    sc:citation <https://doi.org/10.1364/OL.44.004989>,
-        "pmcid:PMC6889808",
-        "pubmed:31613246" ;
-    sc:description """Development of a beam propagation method to simulate the point spread function degradation in scattering media.
-
-Our model based on the beam propagation method calculates the wavefront propagation in the scattering medium with the scattering mean free path and anisotropy factor characterized""" ;
-    sc:featureList edam:operation_3454 ;
-    sc:name "beam propagation method" ;
-    sc:url "https://github.com/BUNPC/Beam-Propagation-Method" .
-
 <https://bio.tools/beap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0196 ;
     sc:citation <https://doi.org/10.1186/1756-0500-2-11>,
@@ -104825,7 +92322,7 @@ Our model based on the beam propagation method calculates the wavefront propagat
     biotools:primaryContact "Con" .
 
 <https://bio.tools/beapp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3304,
@@ -104845,7 +92342,7 @@ The Boston EEG Automated Processing Pipeline (BEAPP) is a modular, Matlab-based
     sc:url "https://github.com/lcnbeapp/beapp" .
 
 <https://bio.tools/bear> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0659 ;
     sc:citation <https://doi.org/10.1093/nar/gku283> ;
@@ -104861,7 +92358,7 @@ The Boston EEG Automated Processing Pipeline (BEAPP) is a modular, Matlab-based
     sc:url "http://bioinformatica.uniroma2.it/BEAR/BEAR_Encoder.zip" .
 
 <https://bio.tools/bearr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -104877,7 +92374,7 @@ The Boston EEG Automated Processing Pipeline (BEAPP) is a modular, Matlab-based
     sc:url "http://giscompute.gis.a-star.edu.sg/~vega/BEARR1.0/" .
 
 <https://bio.tools/bearscc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3308 ;
@@ -104894,11 +92391,17 @@ The Boston EEG Automated Processing Pipeline (BEAPP) is a modular, Matlab-based
     biotools:primaryContact "Benjamin Schuster-Boeckler" .
 
 <https://bio.tools/beast> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3293 ;
-    sc:citation <https://doi.org/10.1093/molbev/mss075> ;
+    sc:citation <https://doi.org/10.1093/molbev/mss075>,
+        <https://doi.org/10.1093/ve/vey016>,
+        <https://doi.org/10.1186/1471-2148-7-214>,
+        "pmcid:PMC2247476",
+        "pmcid:PMC6007674",
+        "pubmed:17996036",
+        "pubmed:29942656" ;
     sc:description "The Bayesian Evolutionary Analysis Sampling Trees is a cross-platform program for Bayesian analysis of molecular sequences using MCMC (Markov chain Monte Carlo). It is entirely orientated towards rooted, time-measured phylogenies inferred using strict or relaxed molecular clock models. It can be used as a method of reconstructing phylogenies but is also a framework for testing evolutionary hypotheses without conditioning on a single tree topology." ;
     sc:featureList edam:operation_0492,
         edam:operation_0540,
@@ -104911,7 +92414,7 @@ The Boston EEG Automated Processing Pipeline (BEAPP) is a modular, Matlab-based
     sc:url "http://beast.bio.ed.ac.uk/" .
 
 <https://bio.tools/beast2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0194,
@@ -104927,8 +92430,24 @@ The Boston EEG Automated Processing Pipeline (BEAPP) is a modular, Matlab-based
     sc:softwareVersion "2.5.1" ;
     sc:url "http://www.beast2.org" .
 
+<https://bio.tools/beastiary> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0621,
+        edam:topic_2269,
+        edam:topic_3293,
+        edam:topic_3316 ;
+    sc:citation <https://doi.org/10.1101/2021.11.21.469478> ;
+    sc:description "Beastiary is designed for visualising and analysing MCMC trace files generated from Bayesian phylogenetic analyses. Beastiary works in real-time and on remote servers (e.g. a HPC). Its goal is to be a beautiful and simple yet powerful tool for Bayesian phylogenetic inference." ;
+    sc:featureList edam:operation_0323,
+        edam:operation_0337 ;
+    sc:name "Beastiary" ;
+    sc:softwareHelp <https://beastiary.wytamma.com/> ;
+    sc:url "https://github.com/Wytamma/beastiary" ;
+    biotools:primaryContact <https://orcid.org/0000-0001-7070-0078> .
+
 <https://bio.tools/beastling> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3293 ;
@@ -104944,14 +92463,14 @@ The Boston EEG Automated Processing Pipeline (BEAPP) is a modular, Matlab-based
 
 <https://bio.tools/beat> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1276" ;
-            sc:name "Nucleic acid features" ;
-            sc:sameAs "http://edamontology.org/data_1276" ] ;
+            sc:additionalType "http://edamontology.org/data_1276" ;
+            sc:encodingFormat "http://edamontology.org/format_2548" ;
+            sc:name "Nucleic acid features" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1772" ;
-            sc:name "Score" ;
-            sc:sameAs "http://edamontology.org/data_1772" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1772" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Score" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3295 ;
@@ -104969,7 +92488,7 @@ The Boston EEG Automated Processing Pipeline (BEAPP) is a modular, Matlab-based
     biotools:primaryContact "Kemal Akman" .
 
 <https://bio.tools/beatmusic> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0128,
@@ -104990,7 +92509,7 @@ The Boston EEG Automated Processing Pipeline (BEAPP) is a modular, Matlab-based
         "Yves Dehouck" .
 
 <https://bio.tools/beatsonlab-microbialgenomics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3070 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btr039>,
@@ -105007,7 +92526,7 @@ The Boston EEG Automated Processing Pipeline (BEAPP) is a modular, Matlab-based
     biotools:primaryContact "Australia" .
 
 <https://bio.tools/beavr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -105026,7 +92545,7 @@ The Boston EEG Automated Processing Pipeline (BEAPP) is a modular, Matlab-based
     sc:url "https://github.com/developerpiru/BEAVR" .
 
 <https://bio.tools/becas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0219,
         edam:topic_3068,
@@ -105044,14 +92563,14 @@ The Boston EEG Automated Processing Pipeline (BEAPP) is a modular, Matlab-based
 
 <https://bio.tools/beclear> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1276" ;
-            sc:name "Nucleic acid features" ;
-            sc:sameAs "http://edamontology.org/data_1276" ] ;
+            sc:additionalType "http://edamontology.org/data_1276" ;
+            sc:encodingFormat "http://edamontology.org/format_2548" ;
+            sc:name "Nucleic acid features" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1772" ;
-            sc:name "Score" ;
-            sc:sameAs "http://edamontology.org/data_1772" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1772" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Score" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3295,
@@ -105071,7 +92590,7 @@ The Boston EEG Automated Processing Pipeline (BEAPP) is a modular, Matlab-based
     biotools:primaryContact "Markus Merl" .
 
 <https://bio.tools/becon> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_2815,
@@ -105088,7 +92607,7 @@ The Boston EEG Automated Processing Pipeline (BEAPP) is a modular, Matlab-based
     biotools:primaryContact "M S Kobor" .
 
 <https://bio.tools/bed> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3345 ;
     sc:citation <https://doi.org/10.12688/f1000research.13925.3> ;
@@ -105104,7 +92623,7 @@ The Boston EEG Automated Processing Pipeline (BEAPP) is a modular, Matlab-based
     biotools:primaryContact "Patrice Godard" .
 
 <https://bio.tools/bed_bayesian> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3173,
         edam:topic_3293 ;
@@ -105118,8 +92637,22 @@ The Boston EEG Automated Processing Pipeline (BEAPP) is a modular, Matlab-based
     sc:url "https://github.com/james-e-barrett/bed" ;
     biotools:primaryContact "James E. Barrett" .
 
+<https://bio.tools/bed_to_protein_map> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3068 ;
+    sc:description "Convert a BED format file of the proteins from a proteomics search database into a tabular format for the Multiomics Visualization Platform (MVP)." ;
+    sc:featureList edam:operation_3434 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "bed to protein map" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://usegalaxy.org.au/root?tool_id=toolshed.g2.bx.psu.edu/repos/galaxyp/bed_to_protein_map/bed_to_protein_map/0.2.0" .
+
 <https://bio.tools/bedgraphtobigwig> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btq351> ;
@@ -105132,7 +92665,7 @@ The Boston EEG Automated Processing Pipeline (BEAPP) is a modular, Matlab-based
     sc:url "https://www.encodeproject.org/software/bedgraphtobigwig/" .
 
 <https://bio.tools/bedops> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0160 ;
@@ -105148,7 +92681,7 @@ The Boston EEG Automated Processing Pipeline (BEAPP) is a modular, Matlab-based
     sc:url "https://bedops.readthedocs.io/en/latest/" .
 
 <https://bio.tools/bedsect> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:citation <https://doi.org/10.3389/fgene.2020.00003>,
         "pubmed:32117432" ;
     sc:description "An Integrated Web Server Application to Perform Intersection, Visualization, and Functional Annotation of Genomic Regions From Multiple Datasets" ;
@@ -105157,7 +92690,7 @@ The Boston EEG Automated Processing Pipeline (BEAPP) is a modular, Matlab-based
     sc:url "http://imgsb.org/bedsect/" .
 
 <https://bio.tools/bedshift> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0622,
@@ -105171,7 +92704,7 @@ The Boston EEG Automated Processing Pipeline (BEAPP) is a modular, Matlab-based
     sc:url "https://bedshift.databio.org" .
 
 <https://bio.tools/bedtk> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btaa827>,
         <https://doi.org/10.1101/2020.07.07.190744> ;
     sc:description "Bedtk is a set of simple tools to process BED files. It so far implements intersection, subtraction, sorting, merging and computing the breadth of coverage." ;
@@ -105183,7 +92716,7 @@ The Boston EEG Automated Processing Pipeline (BEAPP) is a modular, Matlab-based
     sc:url "https://github.com/lh3/bedtk" .
 
 <https://bio.tools/bedtogenepred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:description """Convert a bed file to a genePred file. If BED has at least 12 columns,
 then a genePred with blocks is created. Otherwise single-exon genePreds are
@@ -105193,7 +92726,7 @@ created.""" ;
     sc:url "https://github.com/ENCODE-DCC/kentUtils" .
 
 <https://bio.tools/bedtools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Suite" ;
     sc:applicationSubCategory edam:topic_0622 ;
@@ -105210,14 +92743,14 @@ created.""" ;
 
 <https://bio.tools/bedtools_bamtobed> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ] ;
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Sequence trace" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_3003" ;
+            sc:name "Annotation track" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btq033>,
@@ -105237,18 +92770,18 @@ created.""" ;
 
 <https://bio.tools/bedtools_coveragebed_counts> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ],
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_3003" ;
+            sc:name "Annotation track" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3003" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_3003" ;
+            sc:name "Annotation track" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btq033>,
@@ -105267,14 +92800,14 @@ created.""" ;
 
 <https://bio.tools/bedtools_genomecoveragebed_histogram> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3003" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0622,
@@ -105294,50 +92827,50 @@ created.""" ;
 
 <https://bio.tools/bedtools_intersectbed> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2305" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_3003" ;
+            sc:name "Annotation track" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ],
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence variations" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Sequence trace" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2305" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ],
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence variations" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ] ;
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_3003" ;
+            sc:name "Annotation track" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_3003" ;
+            sc:name "Annotation track" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ],
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Sequence trace" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ],
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence variations" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2305" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:citation <https://doi.org/10.1002/0471250953.bi1112s47>,
@@ -105355,18 +92888,18 @@ created.""" ;
 
 <https://bio.tools/bedtools_intersectbed_bam> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ],
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Sequence trace" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ] ;
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_3003" ;
+            sc:name "Annotation track" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Sequence trace" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:citation <https://doi.org/10.1002/0471250953.bi1112s47>,
@@ -105384,22 +92917,22 @@ created.""" ;
 
 <https://bio.tools/bedtools_mergebedgraph> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3168 ;
@@ -105419,22 +92952,22 @@ created.""" ;
 
 <https://bio.tools/bedtools_multiintersectbed> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ],
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_3003" ;
+            sc:name "Annotation track" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ],
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_3003" ;
+            sc:name "Annotation track" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ] ;
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_3003" ;
+            sc:name "Annotation track" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btq033>,
@@ -105452,7 +92985,7 @@ created.""" ;
     biotools:primaryContact "Galaxy Support Team" .
 
 <https://bio.tools/bedtoolsr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0654,
@@ -105467,7 +93000,7 @@ created.""" ;
     sc:url "http://phanstiel-lab.med.unc.edu/bedtoolsr.html" .
 
 <https://bio.tools/bedutils> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/bts731> ;
@@ -105482,7 +93015,7 @@ created.""" ;
         "Yunlong Liu" .
 
 <https://bio.tools/bee> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Bioinformatics portal" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0602,
@@ -105501,7 +93034,7 @@ created.""" ;
     sc:url "http://bike-bee.snu.ac.kr" .
 
 <https://bio.tools/beem-static> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3697,
@@ -105522,7 +93055,7 @@ created.""" ;
     sc:url "https://github.com/CSB5/BEEM-static" .
 
 <https://bio.tools/beep> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -105539,8 +93072,25 @@ created.""" ;
     sc:name "BeEP" ;
     sc:url "http://www.embnet.qb.fcen.uba.ar/embnet/beep.php" .
 
+<https://bio.tools/beer> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_2269 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC555>,
+        "pubmed:35959988" ;
+    sc:description "BEER implements a Bayesian model for analyzing phage-immunoprecipitation sequencing (PhIP-seq) data. Given a PhIPData object, BEER returns posterior probabilities of enriched antibody responses, point estimates for the relative fold-change in comparison to negative control samples, and more." ;
+    sc:featureList edam:operation_3799 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "BEER" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://bioconductor.org/packages/release/bioc/html/beer.html" .
+
 <https://bio.tools/beespace_navigator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0218,
         edam:topic_0602,
@@ -105556,7 +93106,7 @@ created.""" ;
     sc:url "http://www.beespace.illinois.edu" .
 
 <https://bio.tools/beetl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654 ;
@@ -105569,7 +93119,7 @@ created.""" ;
     sc:url "http://beetl.github.io/BEETL/" .
 
 <https://bio.tools/beetlebase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
@@ -105593,14 +93143,12 @@ created.""" ;
 
 <https://bio.tools/begdb> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0960" ;
-            sc:name "User metadata" ;
-            sc:sameAs "http://edamontology.org/data_0960" ] ;
+            sc:additionalType "http://edamontology.org/data_0960" ;
+            sc:name "User metadata" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2531" ;
-            sc:name "Experiment report" ;
-            sc:sameAs "http://edamontology.org/data_2531" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2531" ;
+            sc:name "Experiment report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_3332 ;
     sc:citation <https://doi.org/10.1135/cccc20081261> ;
@@ -105618,7 +93166,7 @@ created.""" ;
     biotools:primaryContact "Jan Řezáč" .
 
 <https://bio.tools/begonia> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3300,
@@ -105639,7 +93187,7 @@ created.""" ;
     sc:url "https://github.com/GliaLab/Begonia" .
 
 <https://bio.tools/behaviordepot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_3304,
@@ -105659,7 +93207,7 @@ created.""" ;
     sc:url "https://github.com/DeNardoLab/BehaviorDEPOT" .
 
 <https://bio.tools/bel2abm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_3071,
@@ -105675,7 +93223,7 @@ created.""" ;
     biotools:primaryContact "Martin Hofmann-Apitius" .
 
 <https://bio.tools/belg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_3304,
@@ -105691,7 +93239,7 @@ created.""" ;
     sc:url "https://r-spatialecology.github.io/belg/" .
 
 <https://bio.tools/belief> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0218,
@@ -105709,7 +93257,7 @@ created.""" ;
     sc:url "http://belief.scai.fraunhofer.de/BeliefDashboard" .
 
 <https://bio.tools/belt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3169,
@@ -105728,14 +93276,12 @@ created.""" ;
 
 <https://bio.tools/belvu> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:name "Sequence alignment" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:name "Sequence alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0078 ;
     sc:citation <https://doi.org/10.1186/1471-2105-6-108> ;
@@ -105750,7 +93296,7 @@ created.""" ;
     biotools:primaryContact "Erik LL Sonnhammer" .
 
 <https://bio.tools/bem> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3308,
@@ -105766,7 +93312,7 @@ created.""" ;
     sc:url "https://github.com/LifanLiang/EM_BMF" .
 
 <https://bio.tools/benchmarkncvtools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0769,
@@ -105783,7 +93329,7 @@ created.""" ;
         "Stefan Michiels" .
 
 <https://bio.tools/benmap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3314,
         edam:topic_3318 ;
@@ -105799,7 +93345,7 @@ created.""" ;
     biotools:primaryContact "Christine Davis" .
 
 <https://bio.tools/bento> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0218,
@@ -105815,7 +93361,7 @@ created.""" ;
     sc:url "http://bio-nlp.org/bentodemo/" .
 
 <https://bio.tools/benviewer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0602,
@@ -105837,7 +93383,7 @@ created.""" ;
         "Zuhong Lu" .
 
 <https://bio.tools/benz-ws> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0160,
@@ -105856,14 +93402,14 @@ created.""" ;
 
 <https://bio.tools/bepipred> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:encodingFormat "http://edamontology.org/format_2305" ;
+            sc:name "Protein features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_3534 ;
@@ -105882,7 +93428,7 @@ created.""" ;
     biotools:primaryContact "Morten Nielsen" .
 
 <https://bio.tools/berex> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3489 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btt598> ;
@@ -105897,7 +93443,7 @@ created.""" ;
     sc:url "http://infos.korea.ac.kr/berex/" .
 
 <https://bio.tools/berkeley_phylogenomics_group> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0194,
@@ -105919,8 +93465,28 @@ created.""" ;
     sc:url "http://phylogenomics.berkeley.edu/" ;
     biotools:primaryContact "Kimmen Sjölander" .
 
+<https://bio.tools/berokka> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_3316 ;
+    sc:description "Trim, circularise, orient and filter long read bacterial genome assemblies" ;
+    sc:featureList edam:operation_3192,
+        edam:operation_3695 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "berokka" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/tseemann/berokka" .
+
 <https://bio.tools/bert-gt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0218,
         edam:topic_0634,
@@ -105936,8 +93502,42 @@ created.""" ;
     sc:url "https://github.com/ncbi/bert_gt" ;
     biotools:primaryContact <https://orcid.org/0000-0001-9998-916X> .
 
+<https://bio.tools/bert-kcr> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0218,
+        edam:topic_0601,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAB712>,
+        "pubmed:34643684" ;
+    sc:description "BERT-Kcr is a tool for prediction of lysine crotonylation sites by a transfer learning method with pre-trained BERT models." ;
+    sc:featureList edam:operation_0417,
+        edam:operation_0477,
+        edam:operation_3645 ;
+    sc:isAccessibleForFree true ;
+    sc:name "BERT-Kcr" ;
+    sc:url "http://zhulab.org.cn/BERT-Kcr_models/" ;
+    biotools:primaryContact <https://orcid.org/0000-0002-1967-2806> .
+
+<https://bio.tools/bert-promoter> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0218,
+        edam:topic_0749,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1016/J.COMPBIOLCHEM.2022.107732>,
+        "pubmed:35863177" ;
+    sc:description "An improved sequence-based predictor of DNA promoter using BERT pre-trained model and SHAP feature selection." ;
+    sc:featureList edam:operation_0440,
+        edam:operation_3936 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "BERT-Promoter" ;
+    sc:url "https://github.com/khanhlee/bert-promoter" .
+
 <https://bio.tools/bert4bitter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3373,
@@ -105953,7 +93553,7 @@ created.""" ;
     biotools:primaryContact <https://orcid.org/0000-0002-3394-8709> .
 
 <https://bio.tools/bertmhc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -105971,7 +93571,7 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
     sc:url "https://github.com/s6juncheng/BERTMHC" .
 
 <https://bio.tools/besc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -105988,8 +93588,33 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
     sc:name "BESC" ;
     sc:url "http://explainbio.com/" .
 
+<https://bio.tools/besca> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0108,
+        edam:topic_0769,
+        edam:topic_2229,
+        edam:topic_3170,
+        edam:topic_3308 ;
+    sc:citation <https://doi.org/10.1093/NARGAB/LQAB102>,
+        "pmcid:PMC8573822",
+        "pubmed:34761219" ;
+    sc:description "The BESCA (BEyond Single Cell Analysis) package contains many useful python functions to use for your single-cell analysis." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_0335,
+        edam:operation_2436,
+        edam:operation_3629 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "Besca" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://bedapub.github.io/besca/> ;
+    sc:url "https://github.com/bedapub/besca" .
+
 <https://bio.tools/besst> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/bts441>,
@@ -106009,7 +93634,7 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
     biotools:primaryContact "Kristoffer Sahlin" .
 
 <https://bio.tools/best> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2275,
         edam:topic_2814,
@@ -106025,7 +93650,7 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
     biotools:primaryContact "Alexander Popov" .
 
 <https://bio.tools/best-brain> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
         edam:topic_3295,
@@ -106042,7 +93667,7 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
     sc:url "http://best.psych.ac.cn" .
 
 <https://bio.tools/best-infocus-image-stack> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -106060,7 +93685,7 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
     biotools:primaryContact "Vikas Thapa" .
 
 <https://bio.tools/best_literature> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3063,
         edam:topic_3068,
@@ -106079,7 +93704,7 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
     biotools:primaryContact "Jaewoo Kang" .
 
 <https://bio.tools/bestsel> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0736,
@@ -106100,7 +93725,7 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
         "József Kardos" .
 
 <https://bio.tools/betacavityweb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0166,
@@ -106116,7 +93741,7 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
     sc:url "http://voronoi.hanyang.ac.kr/betacavityweb/" .
 
 <https://bio.tools/betascan2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_2269,
         edam:topic_3299 ;
@@ -106133,7 +93758,7 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
     sc:url "https://github.com/ksiewert/BetaScan" .
 
 <https://bio.tools/betaseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0199 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btt719> ;
@@ -106148,7 +93773,7 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
     sc:url "https://yunliweb.its.unc.edu/betaseq/" .
 
 <https://bio.tools/betatpred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -106165,11 +93790,11 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
         "Mac",
         "Windows" ;
     sc:softwareHelp <http://crdd.osdd.net/raghava/betatpred/> ;
-    sc:url "http://www.imtech.res.in/raghava/betatpred/" ;
+    sc:url "https://webs.iiitd.edu.in/raghava/betatpred/" ;
     biotools:primaryContact "Dr. G.P.S. Raghava" .
 
 <https://bio.tools/betatpred2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0154,
@@ -106186,12 +93811,24 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
         "Mac",
         "Windows" ;
     sc:softwareHelp <http://crdd.osdd.net/raghava/betatpred2/help.html> ;
-    sc:url "http://www.imtech.res.in/raghava/betatpred2/" ;
+    sc:url "https://webs.iiitd.edu.in/raghava/betatpred2/" ;
     biotools:primaryContact "Dr. G.P.S. Raghava",
         "Harpreet Kaur" .
 
+<https://bio.tools/betatpred3> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:citation <https://doi.org/10.1093/bioinformatics/18.3.498>,
+        "pubmed:11934756" ;
+    sc:description "Beta Turn predictions in proteins" ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "betatpred3" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/betatpred3/index.html> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/betatpred3/index.html" .
+
 <https://bio.tools/betaturns> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0166,
@@ -106202,12 +93839,12 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
     sc:name "Betaturns" ;
     sc:operatingSystem "Linux" ;
     sc:softwareHelp <http://crdd.osdd.net/raghava//betaturns/method.html> ;
-    sc:url "http://www.imtech.res.in/raghava/betaturns/" ;
+    sc:url "https://webs.iiitd.edu.in/raghava/betaturns/" ;
     biotools:primaryContact "Dr. G.P.S. Raghava",
         "Harpreet Kaur" .
 
 <https://bio.tools/betavaeimputation> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3173,
@@ -106220,7 +93857,7 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
     sc:url "https://github.com/gevaertlab/BetaVAEImputation" .
 
 <https://bio.tools/betavoid> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0166,
@@ -106236,18 +93873,17 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
 
 <https://bio.tools/betaware> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0889" ;
-            sc:name "Structural profile" ;
-            sc:sameAs "http://edamontology.org/data_0889" ],
+            sc:additionalType "http://edamontology.org/data_0889" ;
+            sc:name "Structural profile" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2974" ;
-            sc:name "Protein sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_2974" ] ;
+            sc:additionalType "http://edamontology.org/data_2974" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence (raw)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
@@ -106272,14 +93908,14 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
 
 <https://bio.tools/betaware-deep> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0820 ;
     sc:citation <https://doi.org/10.1016/j.jmb.2020.166729> ;
@@ -106298,7 +93934,7 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
         "Pier Luigi Martelli" .
 
 <https://bio.tools/bets> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -106315,7 +93951,7 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
     sc:url "https://github.com/lujonathanh/BETS" .
 
 <https://bio.tools/better_bunny> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0219,
@@ -106329,7 +93965,7 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
     biotools:primaryContact "Alan Dombkowski" .
 
 <https://bio.tools/betweennet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0602,
         edam:topic_2640 ;
@@ -106345,7 +93981,7 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
     biotools:primaryContact <https://orcid.org/0000-0003-2461-4579> .
 
 <https://bio.tools/bew> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3297,
         edam:topic_3301,
@@ -106361,8 +93997,31 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
     sc:url "http://sing.ei.uvigo.es/bew" ;
     biotools:primaryContact "Anália García Lourenço" .
 
+<https://bio.tools/bexcis> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0654,
+        edam:topic_2269,
+        edam:topic_3295,
+        edam:topic_3305,
+        edam:topic_3411 ;
+    sc:citation <https://doi.org/10.1186/S12859-022-04721-Y>,
+        "pmcid:PMC9128296",
+        "pubmed:35610583" ;
+    sc:description "Measuring the degree of the skewness of the X chromosome inactivation by the Bayesian method, the penalized Fieller's method and the Fieller's method." ;
+    sc:featureList edam:operation_0484,
+        edam:operation_3435,
+        edam:operation_3659 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "BEXCIS" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/Wen-YiYu/BEXCIS" .
+
 <https://bio.tools/bexis2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_3050,
@@ -106385,25 +94044,52 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
         <https://orcid.org/0000-0002-7565-4389> .
 
 <https://bio.tools/beyondcell> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_0928" ;
+            sc:encodingFormat "http://edamontology.org/format_1915" ;
+            sc:name "Gene expression profile" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_3112" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Gene expression matrix" ] ;
+    bsc:output [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_3768" ;
+            sc:name "Clustered expression profiles" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_0951" ;
+            sc:name "Statistical estimate score" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1621" ;
+            sc:name "Pharmacogenomic test report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0208,
         edam:topic_2229,
         edam:topic_2640,
         edam:topic_3170,
         edam:topic_3308 ;
-    sc:citation <https://doi.org/10.1101/2021.04.08.438954> ;
+    sc:citation <https://doi.org/10.1101/2021.04.08.438954>,
+        "pmcid:PMC8675493",
+        "pubmed:34911571" ;
     sc:description "Beyondcell is a computational methodology for identifying tumour cell subpopulations with distinct drug responses in single-cell RNA-seq data and proposing cancer-specific treatments." ;
     sc:featureList edam:operation_0313,
         edam:operation_3223,
         edam:operation_4009 ;
+    sc:isAccessibleForFree true ;
     sc:license "Other" ;
     sc:name "Beyondcell" ;
+    sc:operatingSystem "Linux",
+        "Mac" ;
+    sc:provider "BU_CNIO",
+        "CNIO" ;
+    sc:softwareHelp <https://gitlab.com/bu_cnio/beyondcell/-/blob/master/CHANGELOG.md>,
+        <https://gitlab.com/bu_cnio/beyondcell/-/tree/master/tutorial/analysis_workflow> ;
+    sc:softwareVersion "1.3.3" ;
     sc:url "https://gitlab.com/bu_cnio/beyondcell/" ;
-    biotools:primaryContact "Fátima Al-Shahrour" .
+    biotools:primaryContact <https://orcid.org/0000-0003-2373-769X> .
 
 <https://bio.tools/bfast> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3673 ;
     sc:citation "pubmed:19508732" ;
@@ -106420,7 +94106,7 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
     biotools:primaryContact "Nils Homer" .
 
 <https://bio.tools/bfc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3168,
@@ -106435,7 +94121,7 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
     biotools:primaryContact "Heng Li" .
 
 <https://bio.tools/bfcounter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0654,
@@ -106451,7 +94137,7 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
     biotools:primaryContact "Pall Melsted" .
 
 <https://bio.tools/bfee2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0176,
         edam:topic_0749,
@@ -106466,7 +94152,7 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
     sc:url "http://github.com/fhh2626/BFEE2" .
 
 <https://bio.tools/bfimpute> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2269,
@@ -106480,7 +94166,7 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
     sc:url "https://github.com/maiziezhoulab/Bfimpute" .
 
 <https://bio.tools/bfpdemo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -106498,7 +94184,7 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
     biotools:primaryContact "Alberto Comin" .
 
 <https://bio.tools/bfptool> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0820,
         edam:topic_2229,
@@ -106518,7 +94204,7 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
     biotools:primaryContact "Daniel Šmít" .
 
 <https://bio.tools/bfrm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -106536,7 +94222,7 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
     sc:url "http://www.stat.duke.edu/research/software/west/bfrm/" .
 
 <https://bio.tools/bgafun> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0078,
@@ -106555,7 +94241,7 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
     biotools:primaryContact "Iain Wallace" .
 
 <https://bio.tools/bgc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_0797,
@@ -106570,7 +94256,7 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
     biotools:primaryContact "Alex Buerkle" .
 
 <https://bio.tools/bgd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0203,
@@ -106594,30 +94280,24 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
 
 <https://bio.tools/bgee> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1033" ;
-            sc:name "Ensembl gene ID" ;
-            sc:sameAs "http://edamontology.org/data_1033" ],
+            sc:additionalType "http://edamontology.org/data_3021" ;
+            sc:name "UniProt accession" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3021" ;
-            sc:name "UniProt accession" ;
-            sc:sameAs "http://edamontology.org/data_3021" ],
+            sc:additionalType "http://edamontology.org/data_1033" ;
+            sc:name "Ensembl gene ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2299" ;
-            sc:name "Gene name" ;
-            sc:sameAs "http://edamontology.org/data_2299" ] ;
+            sc:additionalType "http://edamontology.org/data_2299" ;
+            sc:name "Gene name" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0928" ;
-            sc:name "Gene expression profile" ;
-            sc:sameAs "http://edamontology.org/data_0928" ],
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:name "Gene expression data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Gene expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ],
+            sc:additionalType "http://edamontology.org/data_0928" ;
+            sc:name "Gene expression profile" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0916" ;
-            sc:name "Gene report" ;
-            sc:sameAs "http://edamontology.org/data_0916" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0916" ;
+            sc:name "Gene report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0085,
         edam:topic_0797,
@@ -106636,7 +94316,7 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
     sc:url "https://bgee.org/" .
 
 <https://bio.tools/bgeecall> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -106651,7 +94331,7 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
     sc:url "https://bioconductor.org/packages/BgeeCall/" .
 
 <https://bio.tools/bgeedb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0089,
@@ -106671,7 +94351,7 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
         "Andrea Komljenovic" .
 
 <https://bio.tools/bgf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654 ;
     sc:citation <https://doi.org/10.1007/s11390-005-0446-x> ;
@@ -106686,8 +94366,30 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
     sc:softwareVersion "1.01" ;
     sc:url "http://bgf.genomics.org.cn/" .
 
+<https://bio.tools/bglr> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0622,
+        edam:topic_0625,
+        edam:topic_2269,
+        edam:topic_3372 ;
+    sc:citation <https://doi.org/10.1093/GENETICS/IYAC112>,
+        "pmcid:PMC9434216",
+        "pubmed:35924977" ;
+    sc:description "The BGLR-R package implements various types of single-trait shrinkage variable selection Bayesian regressions." ;
+    sc:featureList edam:operation_3196,
+        edam:operation_3659,
+        edam:operation_3936 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "BGLR" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/gdlc/BGLR-R" .
+
 <https://bio.tools/bgmix> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -106707,7 +94409,7 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
     biotools:primaryContact "Alex Lewin" .
 
 <https://bio.tools/bgmut> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0623,
@@ -106728,7 +94430,7 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
     sc:url "http://www.ncbi.nlm.nih.gov/projects/gv/rbc/xslcgi.fcgi?cmd=bgmut/home" .
 
 <https://bio.tools/bgsmtr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0625,
@@ -106748,7 +94450,7 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
     biotools:primaryContact "Farouk S. Nathoo" .
 
 <https://bio.tools/bgt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3277,
@@ -106763,7 +94465,7 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
     biotools:primaryContact "Heng Li" .
 
 <https://bio.tools/bgvar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0625,
         edam:topic_2830,
@@ -106777,7 +94479,7 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
     sc:url "http://clingen.igib.res.in/bgvar/" .
 
 <https://bio.tools/bgwas_r> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2885,
@@ -106794,7 +94496,7 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
     sc:url "https://github.com/n-mounier/bGWAS" .
 
 <https://bio.tools/bgx> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_2269,
@@ -106814,7 +94516,7 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
     biotools:primaryContact "Ernest Turro" .
 
 <https://bio.tools/bhageerath-h> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082 ;
@@ -106829,7 +94531,7 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
     sc:url "http://www.scfbio-iitd.res.in/bhageerath/index.jsp" .
 
 <https://bio.tools/bhai> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3324 ;
@@ -106843,7 +94545,7 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
     sc:url "https://cran.r-project.org/package=BHAI" .
 
 <https://bio.tools/bhairpred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -106861,11 +94563,11 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
         "Mac",
         "Windows" ;
     sc:softwareHelp <http://crdd.osdd.net/raghava/bhairpred/method.html> ;
-    sc:url "http://www.imtech.res.in/raghava/bhairpred/" ;
+    sc:url "https://webs.iiitd.edu.in/raghava/bhairpred/" ;
     biotools:primaryContact "GPS Raghava" .
 
 <https://bio.tools/bhc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2269 ;
@@ -106883,7 +94585,7 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
     biotools:primaryContact "Rich Savage" .
 
 <https://bio.tools/bhglm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0602,
@@ -106899,7 +94601,7 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
     sc:url "http://www.ssg.uab.edu/bhglm/" .
 
 <https://bio.tools/bhi-cect> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0654,
@@ -106918,7 +94620,7 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
     sc:url "https://github.com/princeps091-binf/BHi-Cect" .
 
 <https://bio.tools/bhit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_2885,
@@ -106933,7 +94635,7 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
     biotools:primaryContact "Juexin Wang" .
 
 <https://bio.tools/bhrcr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3302,
         edam:topic_3500 ;
@@ -106954,7 +94656,7 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
     biotools:primaryContact "Colin B. Fogarty <cfogarty at mit.edu" .
 
 <https://bio.tools/bi-force> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203 ;
     sc:citation <https://doi.org/10.1093/nar/gku201>,
@@ -106970,8 +94672,19 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
     sc:softwareVersion "v2" ;
     sc:url "http://biclue.mpi-inf.mpg.de/" .
 
+<https://bio.tools/biadb> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:citation <https://doi.org/10.1186/1471-2210-10-4> ;
+    sc:description "A Database for Benzylisoquinoline Alkaloids is an attempt to gather the scattered information related to the BIA's." ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "BIAdb" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/biadb/index.html> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/biadb/index.html" .
+
 <https://bio.tools/biaflows> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0769,
@@ -106989,7 +94702,7 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
     sc:url "https://biaflows.neubias.org" .
 
 <https://bio.tools/biana> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API" ;
     sc:applicationSubCategory edam:topic_2259 ;
     sc:author <http://orcid.org/0000-0001-9539-2606> ;
@@ -107008,7 +94721,7 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
     sc:url "http://sbi.imim.es/web/index.php/research/servers/biana?page=biana.server" .
 
 <https://bio.tools/bianca> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_3334,
@@ -107028,7 +94741,7 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
     biotools:primaryContact <http://orcid.org/0000-0002-0540-9353> .
 
 <https://bio.tools/biapss> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0157,
@@ -107048,7 +94761,7 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
     sc:url "https://biapss.chem.iastate.edu/" .
 
 <https://bio.tools/biasaway> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0157,
@@ -107068,7 +94781,7 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
     sc:url "https://biasaway.uio.no" .
 
 <https://bio.tools/bibliome> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0102,
@@ -107085,7 +94798,7 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
     sc:url "http://bibliome.ai" .
 
 <https://bio.tools/bibliospec> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2885 ;
@@ -107099,7 +94812,7 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
     sc:url "https://skyline.gs.washington.edu/labkey/project/home/software/BiblioSpec/begin.view" .
 
 <https://bio.tools/bicare> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0605,
@@ -107118,7 +94831,7 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
     biotools:primaryContact "Pierre Gestraud" .
 
 <https://bio.tools/biclique> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3305,
@@ -107133,14 +94846,12 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
 
 <https://bio.tools/biclue> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Gene expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ],
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:name "Sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:name "Gene expression data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1093/nar/gku201> ;
@@ -107158,7 +94869,7 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
     biotools:primaryContact "Jan Baumbach" .
 
 <https://bio.tools/bicluster> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203 ;
     sc:citation <https://doi.org/10.1371/journal.pone.0042431>,
@@ -107174,7 +94885,7 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
     sc:url "http://www.australianprostatecentre.org/research/software/seed-based-biclustering-of-gene-expression-data" .
 
 <https://bio.tools/bicon> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
@@ -107194,7 +94905,7 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
     sc:url "https://exbio.wzw.tum.de/bicon" .
 
 <https://bio.tools/bicorn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0602,
@@ -107215,7 +94926,7 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
     sc:url "https://cran.r-project.org/package=BICORN" .
 
 <https://bio.tools/bicoverlapper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0203,
@@ -107233,7 +94944,7 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
     biotools:primaryContact "Rodrigo Santamaría" .
 
 <https://bio.tools/bicpams> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Web API" ;
     sc:applicationSubCategory edam:topic_0602,
@@ -107252,7 +94963,7 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
     biotools:primaryContact "Rui Henriques" .
 
 <https://bio.tools/bicycle> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:author "Bioinformatics Unit. CNIO: Spanish National Cancer Research Centre",
@@ -107269,7 +94980,7 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
     sc:url "https://www.sing-group.org/bicycle/index.html" .
 
 <https://bio.tools/bidas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0203,
@@ -107289,7 +95000,7 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
     biotools:primaryContact "George M. Spyrou" .
 
 <https://bio.tools/bidchips> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3169,
@@ -107306,7 +95017,7 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
     biotools:primaryContact "Theodore J. Perkins, PhD" .
 
 <https://bio.tools/biddsat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_3050,
@@ -107320,7 +95031,7 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
     biotools:primaryContact "Javier Otegui" .
 
 <https://bio.tools/bids_apps> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_3071,
         edam:topic_3334,
@@ -107341,7 +95052,7 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
     sc:url "http://bids-apps.neuroimaging.io/" .
 
 <https://bio.tools/bidsonym> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3384 ;
@@ -107355,7 +95066,7 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
     biotools:primaryContact "Peer Herholz" .
 
 <https://bio.tools/bierapp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0602,
@@ -107382,7 +95093,7 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
     biotools:primaryContact "BiERapp team" .
 
 <https://bio.tools/bifap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3305,
@@ -107398,7 +95109,7 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
     sc:url "http://bifap.aemps.es" .
 
 <https://bio.tools/bifet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0204,
@@ -107417,7 +95128,7 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
     biotools:primaryContact "Ahrim Youn" .
 
 <https://bio.tools/biforce_toolbox> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0634,
@@ -107433,7 +95144,7 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
     sc:url "http://bioinfo.utu.fi/BiForceToolbox/" .
 
 <https://bio.tools/bifrost> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
@@ -107450,7 +95161,7 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
     sc:url "https://github.com/pmelsted/bifrost" .
 
 <https://bio.tools/big-fam> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0102,
@@ -107468,7 +95179,7 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
     sc:url "https://bigfam.bioinformatics.nl" .
 
 <https://bio.tools/big-map> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library",
         "Workflow" ;
@@ -107491,7 +95202,7 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
     sc:url "https://github.com/medema-group/BiG-MAP" .
 
 <https://bio.tools/big-mex> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0203,
         edam:topic_0602,
@@ -107510,7 +95221,7 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
     sc:url "https://github.com/pereiramemo/BiG-MEx" .
 
 <https://bio.tools/bigPint> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
         edam:topic_3170 ;
@@ -107526,7 +95237,7 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
     sc:url "https://lindsayrutter.github.io/bigPint" .
 
 <https://bio.tools/big_slice> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3053 ;
     sc:description "BiG-SLiCE is a Python-based tool to perform a large-scale (>> 1 million) clustering analysis of Biosynthetic Gene Cluster data." ;
@@ -107538,7 +95249,7 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
     sc:url "https://github.com/medema-group/bigslice" .
 
 <https://bio.tools/bigan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_0659,
         edam:topic_2640,
@@ -107557,7 +95268,7 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
     sc:url "https://github.com/TomasYang001/BiGAN-lncRNA-disease-associations-prediction.git" .
 
 <https://bio.tools/bigbrainwarp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3304,
@@ -107573,7 +95284,7 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
     sc:url "https://github.com/caseypaquola/BigBrainWarp" .
 
 <https://bio.tools/bigbwa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3168,
@@ -107592,7 +95303,7 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
     biotools:primaryContact "José M. Abuín" .
 
 <https://bio.tools/bigdataprocessor2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Plug-in" ;
     sc:applicationSubCategory edam:topic_0611,
@@ -107607,7 +95318,7 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
     sc:url "https://github.com/bigdataprocessor/bigdataprocessor2" .
 
 <https://bio.tools/biggr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0602,
@@ -107627,8 +95338,27 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
     biotools:primaryContact "Anand K. Gavai",
         "Hannes Hettling" .
 
+<https://bio.tools/bigl> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_2269,
+        edam:topic_3336 ;
+    sc:author <https://orcid.org/0000-0002-4501-5180>,
+        "Maxim Nazarov" ;
+    sc:citation <https://doi.org/10.1002/PST.2173>,
+        "pubmed:34608741" ;
+    sc:description "BIGL R-package which allows for a quick screening of drug combinations. Combination therapies are increasingly adopted as the standard of care for various diseases to improve treatment response, minimise the development of resistance and or minimise adverse events. Therefore, synergistic combinations are screened early in the drug discovery process, in which their potential is evaluated by comparing the observed combination effect to that expected under a null model." ;
+    sc:featureList edam:operation_2238 ;
+    sc:license "GPL-3.0" ;
+    sc:name "BIGL" ;
+    sc:softwareHelp <https://cran.r-project.org/web/packages/BIGL/BIGL.pdf>,
+        <https://cran.r-project.org/web/packages/BIGL/vignettes/analysis.html>,
+        <https://cran.r-project.org/web/packages/BIGL/vignettes/methodology.html> ;
+    sc:url "https://CRAN.R-project.org/package=BIGL" ;
+    biotools:primaryContact <https://orcid.org/0000-0002-4501-5180> .
+
 <https://bio.tools/bigld> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0199,
@@ -107648,7 +95378,7 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
         "Yun Joo Yoo" .
 
 <https://bio.tools/bigmelon> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3168,
@@ -107667,7 +95397,7 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
     biotools:primaryContact "Tyler Gorrie-Stone" .
 
 <https://bio.tools/bigmemoryextras> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0605,
@@ -107686,7 +95416,7 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
     biotools:primaryContact "Peter M. Haverty" .
 
 <https://bio.tools/bigmpi4py> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0654,
@@ -107702,7 +95432,7 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
     sc:url "https://gitlab.com/alexmascension/bigmpi4py" .
 
 <https://bio.tools/bignasim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Workbench" ;
     sc:applicationSubCategory edam:topic_0077,
@@ -107729,7 +95459,7 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
     biotools:primaryContact "Adam Hospital" .
 
 <https://bio.tools/bigo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3077,
         edam:topic_3305,
         edam:topic_3318,
@@ -107747,7 +95477,7 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
     sc:url "http://bigoprogram.eu" .
 
 <https://bio.tools/bigpre> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0654,
@@ -107763,22 +95493,22 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
 
 <https://bio.tools/bigr_xnat> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3546" ;
-            sc:name "Image metadata" ;
-            sc:sameAs "http://edamontology.org/data_3546" ],
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3468" ;
+            sc:name "Image" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ] ;
+            sc:additionalType "http://edamontology.org/data_3546" ;
+            sc:encodingFormat "http://edamontology.org/format_3468" ;
+            sc:name "Image metadata" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ],
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3468" ;
+            sc:name "Image" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3546" ;
-            sc:name "Image metadata" ;
-            sc:sameAs "http://edamontology.org/data_3546" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3546" ;
+            sc:encodingFormat "http://edamontology.org/format_3468" ;
+            sc:name "Image metadata" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API" ;
     sc:applicationSubCategory edam:topic_3384 ;
     sc:author "Erwin Vast" ;
@@ -107798,7 +95528,7 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
     biotools:primaryContact "Stefan Klein" .
 
 <https://bio.tools/bigsnpr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0199,
@@ -107817,7 +95547,7 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
         "Michael G B Blum" .
 
 <https://bio.tools/bigstatsr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3569,
         edam:topic_3570 ;
@@ -107834,7 +95564,7 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
         "Michael G B Blum" .
 
 <https://bio.tools/bigtop> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_2885,
         edam:topic_3168,
@@ -107851,7 +95581,7 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
     sc:url "https://dnanexus.github.io/bigtop/build/" .
 
 <https://bio.tools/bigwas_assoc_pipeline> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0769,
         edam:topic_3316,
@@ -107872,7 +95602,7 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
     sc:url "https://github.com/ikmb/gwas-assoc" .
 
 <https://bio.tools/bigwas_qc_pipeline> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:description "A GWAS Quality Control Pipeline for big data" ;
     sc:isAccessibleForFree true ;
@@ -107883,14 +95613,14 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
 
 <https://bio.tools/bigwig_to_bedgraph> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ] ;
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_3006" ;
+            sc:name "Annotation track" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:citation <https://doi.org/10.1093/nar/gkw343>,
@@ -107905,8 +95635,28 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
     sc:url "http://hgdownload.cse.ucsc.edu/downloads.html" ;
     biotools:primaryContact "Galaxy Support Team" .
 
+<https://bio.tools/bike> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workflow" ;
+    sc:applicationSubCategory edam:topic_0601,
+        edam:topic_3301 ;
+    sc:citation <https://doi.org/10.3390/FOODS10112520>,
+        "pmcid:PMC8621415",
+        "pubmed:34828801" ;
+    sc:description "BIKE is a Bayesian dietary exposure assessment model for microbiological and chemical hazards." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_0479,
+        edam:operation_3659 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "BIKE" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/jukran/BIKE" .
+
 <https://bio.tools/bima> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0097,
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@@ -107920,8 +95670,24 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
     sc:url "http://bioinformaticstools.mayo.edu/research/bima/" ;
     biotools:primaryContact "George Vasmastzis" .
 
+<https://bio.tools/bimam> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Desktop application" ;
+    sc:applicationSubCategory edam:topic_2269,
+        edam:topic_3305 ;
+    sc:citation <https://doi.org/10.1093/IJE/DYAB177>,
+        "pmcid:PMC8580266" ;
+    sc:description "BIMAM (Bayesian IMputation and Analysis Model) is a tool for imputing variables missing across datasets using a Bayesian imputation and analysis model. The BIMAM tool is a user-friendly, freely available tool that does not require knowledge of Bayesian methods. The combination of multiple datasets is routine in modern epidemiology, but different studies may have measured different sets of variables; this is often inefficiently dealt with by excluding studies or dropping variables. Multilevel multiple imputation methods to impute these “systematically” missing data (as opposed to “sporadically” missing data within a study) are available, but problems may arise when many random effects are needed in the analysis and imputation models to allow for heterogeneity across studies. BIMAM implements a Bayesian method that works well in this situation." ;
+    sc:featureList edam:operation_3435,
+        edam:operation_3557,
+        edam:operation_3659 ;
+    sc:name "BIMAM" ;
+    sc:operatingSystem "Windows" ;
+    sc:url "http://www.alecstudy.org/bimam" ;
+    biotools:primaryContact <https://orcid.org/0000-0001-9166-3958> .
+
 <https://bio.tools/bimbam> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102 ;
     sc:citation <https://doi.org/10.1371/journal.pgen.1000279>,
@@ -107937,7 +95703,7 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
     sc:url "http://www.haplotype.org/bimbam.html" .
 
 <https://bio.tools/bimm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0199,
@@ -107953,8 +95719,28 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
     sc:url "http://www.helsinki.fi/~mjxpirin/download.html" ;
     biotools:primaryContact "Matti Pirinen" .
 
+<https://bio.tools/bimm_sc> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0080,
+        edam:topic_0121,
+        edam:topic_0602,
+        edam:topic_2640,
+        edam:topic_3170 ;
+    sc:citation <https://doi.org/10.1016/J.COMPBIOMED.2022.105999>,
+        "pubmed:35998480" ;
+    sc:description "A novel Bioinformatic Inference and Multiscale Modeling (BIMM) method that can  discovers hub genes of TGFβ, MYC, and SMAD3 varied underlie DEX treatment" ;
+    sc:featureList edam:operation_1781,
+        edam:operation_2436,
+        edam:operation_3928 ;
+    sc:license "Not licensed" ;
+    sc:name "BIMM" ;
+    sc:operatingSystem "Mac",
+        "Windows" ;
+    sc:url "https://github.com/chenm19/BIMM" .
+
 <https://bio.tools/bims> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0780,
@@ -107975,7 +95761,7 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
     sc:url "https://www.breedwithbims.org" .
 
 <https://bio.tools/bin3C> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3174,
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@@ -107997,7 +95783,7 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
     biotools:primaryContact "Matthew DeMaere" .
 
 <https://bio.tools/binQTL> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
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         edam:topic_3517 ;
@@ -108011,7 +95797,7 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
     sc:url "https://github.com/venyao/binQTL" .
 
 <https://bio.tools/binana> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0128,
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@@ -108028,7 +95814,7 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
     biotools:primaryContact "Jacob Durrant" .
 
 <https://bio.tools/binary-genetic-algorithm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3315,
         edam:topic_3474,
@@ -108045,7 +95831,7 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
     biotools:primaryContact "Dr Oluleye Babatunde" .
 
 <https://bio.tools/binary-volumes> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:description "Creates a set of binary volumes from a volume of labels (integers value)" ;
     sc:isAccessibleForFree true ;
@@ -108058,7 +95844,7 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
     biotools:primaryContact "Christopher Coello" .
 
 <https://bio.tools/binat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0602 ;
     sc:citation <https://doi.org/10.12688/F1000RESEARCH.5753.1> ;
@@ -108075,18 +95861,15 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
 
 <https://bio.tools/binche> a sc:SoftwareApplication ;
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-            sc:identifier "http://edamontology.org/data_1174" ;
-            sc:name "ChEBI ID" ;
-            sc:sameAs "http://edamontology.org/data_1174" ] ;
+            sc:additionalType "http://edamontology.org/data_1174" ;
+            sc:name "ChEBI ID" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ],
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-            sc:sameAs "http://edamontology.org/data_0962" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
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+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
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@@ -108107,7 +95890,7 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
     biotools:primaryContact "Pablo Moreno" .
 
 <https://bio.tools/bind> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
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@@ -108129,7 +95912,7 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
     biotools:primaryContact "Christopher W. V. Hogue" .
 
 <https://bio.tools/binda> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0605,
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@@ -108146,70 +95929,62 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
 
 <https://bio.tools/bindingdb> a sc:SoftwareApplication ;
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-            sc:name "PDB ID" ;
-            sc:sameAs "http://edamontology.org/data_1127" ],
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     bsc:output [ a bsct:FormalParameter ;
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-            sc:name "Protein-ligand interaction report" ;
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-            sc:identifier "http://edamontology.org/data_0857" ;
-            sc:name "Sequence search results" ;
-            sc:sameAs "http://edamontology.org/data_0857" ],
+            sc:additionalType "http://edamontology.org/data_0857" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Sequence search results" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0962" ;
-            sc:name "Small molecule report" ;
-            sc:sameAs "http://edamontology.org/data_0962" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0962" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Small molecule report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0154 ;
@@ -108226,7 +96001,7 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
     biotools:primaryContact "Contact Form" .
 
 <https://bio.tools/bindkin> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0199,
         edam:topic_0749,
@@ -108241,7 +96016,7 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
     sc:url "https://github.com/CSB-KaracaLab/BINDKIN" .
 
 <https://bio.tools/bindn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0154,
@@ -108258,7 +96033,7 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
     sc:url "http://bioinformatics.ksu.edu/bindn/" .
 
 <https://bio.tools/bindsc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_2229,
@@ -108276,7 +96051,7 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
     sc:url "https://github.com/KChen-lab/bindSC" .
 
 <https://bio.tools/bindtranslation> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0128,
@@ -108296,7 +96071,7 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
     biotools:primaryContact "Gary D. Bader" .
 
 <https://bio.tools/bindup> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0099,
@@ -108315,7 +96090,7 @@ Improves MHC-peptide class II interaction prediction with transformer and multip
     biotools:primaryContact "Yael Mandel" .
 
 <https://bio.tools/bingleseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_3170,
@@ -108335,22 +96110,19 @@ To begin DE analysis of Bulk RNA-Seq data, first a count table with a specific f
 
 <https://bio.tools/bingo> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2338" ;
-            sc:name "Ontology identifier" ;
-            sc:sameAs "http://edamontology.org/data_2338" ],
+            sc:additionalType "http://edamontology.org/data_2338" ;
+            sc:name "Ontology identifier" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1025" ;
-            sc:name "Gene identifier" ;
-            sc:sameAs "http://edamontology.org/data_1025" ] ;
+            sc:additionalType "http://edamontology.org/data_1025" ;
+            sc:name "Gene identifier" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2338" ;
-            sc:name "Ontology identifier" ;
-            sc:sameAs "http://edamontology.org/data_2338" ],
+            sc:additionalType "http://edamontology.org/data_1669" ;
+            sc:name "P-value" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1669" ;
-            sc:name "P-value" ;
-            sc:sameAs "http://edamontology.org/data_1669" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2338" ;
+            sc:encodingFormat "http://edamontology.org/format_1964" ;
+            sc:name "Ontology identifier" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0085 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/bti551> ;
@@ -108366,8 +96138,30 @@ To begin DE analysis of Bulk RNA-Seq data, first a count table with a specific f
     sc:url "http://www.psb.ugent.be/cbd/papers/BiNGO/Home.html" ;
     biotools:primaryContact "Steven Maere" .
 
+<https://bio.tools/binmat> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0091,
+        edam:topic_0769,
+        edam:topic_2885 ;
+    sc:citation <https://doi.org/10.3897/BDJ.10.E77875>,
+        "pmcid:PMC8933389",
+        "pubmed:35437391" ;
+    sc:description "BinMat offers users of fragment analysis methods an efficient and easy-to-use platform to process their binary data matrices, by means of either a graphical user interface or an R package." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_0543,
+        edam:operation_3432 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "BinMat" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://clarkevansteenderen.shinyapps.io/BINMAT/" .
+
 <https://bio.tools/binnacle> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
@@ -108390,7 +96184,7 @@ To begin DE analysis of Bulk RNA-Seq data, first a count table with a specific f
     biotools:primaryContact "Mihai Pop" .
 
 <https://bio.tools/binnednp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0610 ;
     sc:citation <https://doi.org/10.1002/ECE3.5448>,
         "pmcid:PMC6802074",
@@ -108407,8 +96201,29 @@ Kernel density and distribution estimation for interval-grouped data (Reyes, Fra
     sc:name "binnednp" ;
     sc:url "https://cran.r-project.org/package=binnednp" .
 
+<https://bio.tools/binner_R> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0593,
+        edam:topic_3172,
+        edam:topic_3360,
+        edam:topic_3520 ;
+    sc:citation <https://doi.org/10.1007/S11306-022-01923-6>,
+        "pmcid:PMC9345815",
+        "pubmed:35917032" ;
+    sc:description "A spectral binning approach for flow infusion electrospray high resolution mass spectrometry (FIE-HRMS) metabolome fingerprinting data." ;
+    sc:featureList edam:operation_3215,
+        edam:operation_3436,
+        edam:operation_3704 ;
+    sc:license "GPL-3.0" ;
+    sc:name "binneR" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://aberhrml.github.io/binneR/" .
+
 <https://bio.tools/binning> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3174 ;
     sc:citation <https://doi.org/10.1186/gb-2009-10-8-r85> ;
     sc:description "Scripts required to calculate tetramer frequencies and create input files for ESOM" ;
@@ -108419,7 +96234,7 @@ Kernel density and distribution estimation for interval-grouped data (Reyes, Fra
     sc:url "https://github.com/tetramerFreqs/Binning" .
 
 <https://bio.tools/binoculars> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_2828 ;
@@ -108437,7 +96252,7 @@ Kernel density and distribution estimation for interval-grouped data (Reyes, Fra
     sc:url "https://github.com/id03/binoculars" .
 
 <https://bio.tools/binom> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2259,
@@ -108455,7 +96270,7 @@ Kernel density and distribution estimation for interval-grouped data (Reyes, Fra
     biotools:primaryContact "Andrei Zinovyev" .
 
 <https://bio.tools/binomialrf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
         edam:topic_0634,
@@ -108472,7 +96287,7 @@ Kernel density and distribution estimation for interval-grouped data (Reyes, Fra
     sc:url "https://github.com/SamirRachidZaim/binomialRF" .
 
 <https://bio.tools/binosnp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2885,
@@ -108493,7 +96308,7 @@ Accurate drug resistance detection is key for guiding effective tuberculosis tre
     sc:url "http://www.github.com/ngs-fzb/binoSNP" .
 
 <https://bio.tools/binpacker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0196,
@@ -108508,7 +96323,7 @@ Accurate drug resistance detection is key for guiding effective tuberculosis tre
     sc:url "https://sourceforge.net/projects/transcriptomeassembly/" .
 
 <https://bio.tools/binquasi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3127,
         edam:topic_3168,
@@ -108526,7 +96341,7 @@ Accurate drug resistance detection is key for guiding effective tuberculosis tre
     biotools:primaryContact "Emily Goren" .
 
 <https://bio.tools/binsanity> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3174 ;
     sc:citation <https://doi.org/10.7717/peerj.3035> ;
     sc:description "Unsupervised Clustering of Environmental Microbial Assemblies Using Coverage and Affinity Propagation" ;
@@ -108539,7 +96354,7 @@ Accurate drug resistance detection is key for guiding effective tuberculosis tre
     sc:url "https://github.com/edgraham/BinSanity" .
 
 <https://bio.tools/bio-answerfinder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0218,
         edam:topic_3303,
@@ -108556,7 +96371,7 @@ Accurate drug resistance detection is key for guiding effective tuberculosis tre
     sc:url "https://github.com/scicrunch/bio-answerfinder" .
 
 <https://bio.tools/bio-cigar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:description "Parse CIGAR strings and translate coordinates to/from reference/query." ;
@@ -108568,7 +96383,7 @@ Accurate drug resistance detection is key for guiding effective tuberculosis tre
     sc:url "https://github.com/MullinsLab/Bio-Cigar" .
 
 <https://bio.tools/bio-docklets> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3168,
         edam:topic_3170,
@@ -108585,7 +96400,7 @@ Accurate drug resistance detection is key for guiding effective tuberculosis tre
     biotools:primaryContact "Konstantinos Krampis" .
 
 <https://bio.tools/bio-formats> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3070 ;
     sc:description "Bio-Formats is a standalone Java library for reading and writing life sciences image file formats. It is capable of parsing both pixels and metadata for a large number of formats, as well as writing to several formats. See the table below for a complete list (click the headers to sort, and format names to see all information)." ;
@@ -108599,7 +96414,7 @@ Accurate drug resistance detection is key for guiding effective tuberculosis tre
     sc:url "http://www.openmicroscopy.org/site/products/bio-formats" .
 
 <https://bio.tools/bio-gats> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0820,
@@ -108619,7 +96434,7 @@ Accurate drug resistance detection is key for guiding effective tuberculosis tre
     sc:url "https://github.com/amara86/Bio-GATS" .
 
 <https://bio.tools/bio-jeti> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0769,
@@ -108635,7 +96450,7 @@ Accurate drug resistance detection is key for guiding effective tuberculosis tre
     sc:url "http://ls5-www.cs.tu-dortmund.de/projects/biojeti/about.php" .
 
 <https://bio.tools/bio-lgca> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0625,
@@ -108652,7 +96467,7 @@ To overcome drawbacks of classical on-lattice models, we introduce a novel on-la
     sc:url "https://github.com/sisyga/BIO-LGCA" .
 
 <https://bio.tools/bio-mosaic> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:description "The first tool for integrating methodologically diverse OD (Ortholog detection) methods." ;
@@ -108667,7 +96482,7 @@ To overcome drawbacks of classical on-lattice models, we introduce a novel on-la
     biotools:primaryContact "Admin" .
 
 <https://bio.tools/bio-samtools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622 ;
     sc:citation "pubmed:25819670" ;
@@ -108682,7 +96497,7 @@ To overcome drawbacks of classical on-lattice models, we introduce a novel on-la
     biotools:primaryContact "Raoul J.P. Bonnal" .
 
 <https://bio.tools/bio-seco> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0091 ;
     sc:citation <https://doi.org/10.1186/1471-2105-15-S1-S3> ;
@@ -108696,7 +96511,7 @@ To overcome drawbacks of classical on-lattice models, we introduce a novel on-la
     sc:url "http://www.bioinformatics.deib.polimi.it/bio-seco/seco/" .
 
 <https://bio.tools/bio-tds> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3068,
         edam:topic_3077,
@@ -108716,7 +96531,7 @@ To overcome drawbacks of classical on-lattice models, we introduce a novel on-la
     biotools:primaryContact "Etienne Gnimpieba" .
 
 <https://bio.tools/bio-tradis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_0798,
@@ -108730,7 +96545,7 @@ To overcome drawbacks of classical on-lattice models, we introduce a novel on-la
     sc:url "https://github.com/sanger-pathogens/Bio-Tradis" .
 
 <https://bio.tools/bio2midi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0654 ;
     sc:description "Bio2Midi converts the text of a DNA or protein sequence to a MIDI file, which you may immediately audition, or import into any MIDI sequencer for further compositional processing." ;
@@ -108742,7 +96557,7 @@ To overcome drawbacks of classical on-lattice models, we introduce a novel on-la
     sc:url "http://algoart.com/bio2midi.htm" .
 
 <https://bio.tools/bio2rxn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0623,
         edam:topic_0821,
@@ -108755,7 +96570,7 @@ To overcome drawbacks of classical on-lattice models, we introduce a novel on-la
     sc:url "http://design.rxnfinder.org/bio2rxn/" .
 
 <https://bio.tools/bio3d> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0091,
@@ -108776,7 +96591,7 @@ To overcome drawbacks of classical on-lattice models, we introduce a novel on-la
     sc:url "http://thegrantlab.org/bio3d/" .
 
 <https://bio.tools/bio3d-web> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0176,
@@ -108793,23 +96608,8 @@ To overcome drawbacks of classical on-lattice models, we introduce a novel on-la
     sc:name "Bio3D-Web" ;
     sc:url "https://bitbucket.org/Grantlab/bio3d-web" .
 
-<https://bio.tools/bioCADDIE_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3068,
-        edam:topic_3071,
-        edam:topic_3303 ;
-    sc:citation <https://doi.org/10.1093/DATABASE/BAX091>,
-        "pubmed:31725862" ;
-    sc:description """Leveraging word embeddings and medical entity extraction for biomedical dataset retrieval using unstructured texts.
-
-Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
-    sc:featureList edam:operation_2421,
-        edam:operation_2422,
-        edam:operation_3280 ;
-    sc:name "bioCADDIE_autogenerated" ;
-    sc:url "https://github.com/yanshanwang/biocaddie2016mayodata" .
-
 <https://bio.tools/bioGUI> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0196,
         edam:topic_3382 ;
@@ -108839,26 +96639,8 @@ Free document hosting provided by Read the Docs""" ;
     sc:softwareHelp <https://biogui.readthedocs.io/en/latest/> ;
     sc:url "https://github.com/mjoppich/bioGUI" .
 
-<https://bio.tools/bioRxiv> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3068,
-        edam:topic_3070,
-        edam:topic_3304,
-        edam:topic_3379 ;
-    sc:citation <https://doi.org/10.1101/833400> ;
-    sc:description """the preprint server for biology.
-
-MS Word templates for a more readable BioRxiv product.
-
-bioRxiv - the preprint server for biology, operated by Cold Spring Harbor Laboratory, a research and educational institution.
-
-We use cookies on this site to enhance your user experience. By clicking any link on this page you are giving your consent for us to set cookies.
-
-This template aims to create reader-friendly BioRxiv preprints. Inspiration for this template comes from a similar effort by Dr. Dennis Eckmeier (http://www.eckmeier.de/?attachment_id=340)""" ;
-    sc:name "bioRxiv" ;
-    sc:url "http://bioRxiv.org" .
-
 <https://bio.tools/bio_c> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0203,
@@ -108872,8 +96654,14 @@ This template aims to create reader-friendly BioRxiv preprints. Inspiration for
     sc:softwareVersion "1.0" ;
     sc:url "http://www.kofler.or.at/bioinformatics/biosharp.html" .
 
+<https://bio.tools/bio_contrast_subgraph> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:description "Software for implementing the algorithms proposed in Lanciano et al. \"Contrast Subgraphs Allow Comparing Homogeneous and Heterogeneous Networks Derived from Omics Data\"" ;
+    sc:name "bio_contrast_subgraph" ;
+    sc:url "https://github.com/tlancian/bio_cs" .
+
 <https://bio.tools/bioacc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_2840,
@@ -108889,8 +96677,21 @@ This template aims to create reader-friendly BioRxiv preprints. Inspiration for
     sc:url "https://mosaic.univ-lyon1.fr/bioacc" ;
     biotools:primaryContact <https://orcid.org/0000-0003-4604-0166> .
 
+<https://bio.tools/bioadapt-mrc> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC508>,
+        "pubmed:35876792" ;
+    sc:description "Biomedical machine reading comprehension (biomedical-MRC) aims to comprehend complex biomedical narratives and assist healthcare professionals in retrieving information from them." ;
+    sc:featureList edam:operation_2422 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "BioADAPT-MRC" ;
+    sc:url "https://github.com/mmahbub/BioADAPT-MRC" .
+
 <https://bio.tools/bioafmviewer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0602,
@@ -108910,7 +96711,7 @@ This template aims to create reader-friendly BioRxiv preprints. Inspiration for
     sc:url "http://www.bioafmviewer.com" .
 
 <https://bio.tools/bioage> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3295,
         edam:topic_3305,
@@ -108931,7 +96732,7 @@ This template aims to create reader-friendly BioRxiv preprints. Inspiration for
     sc:url "http://github.com/dayoonkwon/BioAge" .
 
 <https://bio.tools/bioaider> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0622,
@@ -108946,16 +96747,32 @@ This template aims to create reader-friendly BioRxiv preprints. Inspiration for
     sc:name "BioAider" ;
     sc:url "https://github.com/ZhijianZhou01/BioAider" .
 
+<https://bio.tools/bioalbert> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0089,
+        edam:topic_0091,
+        edam:topic_0218 ;
+    sc:citation <https://doi.org/10.1186/S12859-022-04688-W>,
+        "pmcid:PMC9022356",
+        "pubmed:35448946" ;
+    sc:description "Benchmarking for biomedical natural language processing tasks with a domain specific ALBERT." ;
+    sc:featureList edam:operation_3280 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "BioALBERT" ;
+    sc:url "https://github.com/usmaann/BioALBERT" .
+
 <https://bio.tools/bioalcidae> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1050" ;
-            sc:name "File name" ;
-            sc:sameAs "http://edamontology.org/data_1050" ] ;
+            sc:additionalType "http://edamontology.org/data_1050" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "File name" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1050" ;
-            sc:name "File name" ;
-            sc:sameAs "http://edamontology.org/data_1050" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1050" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "File name" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:author "Pierre Lindenbaum" ;
@@ -108977,7 +96794,7 @@ This template aims to create reader-friendly BioRxiv preprints. Inspiration for
     biotools:primaryContact "Pierre Lindenbaum" .
 
 <https://bio.tools/bioanalres_bar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -108999,14 +96816,14 @@ This template aims to create reader-friendly BioRxiv preprints. Inspiration for
 
 <https://bio.tools/bioassayr> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1566" ;
-            sc:name "Protein-ligand interaction report" ;
-            sc:sameAs "http://edamontology.org/data_1566" ] ;
+            sc:additionalType "http://edamontology.org/data_1566" ;
+            sc:encodingFormat "http://edamontology.org/format_2054" ;
+            sc:name "Protein-ligand interaction report" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1566" ;
-            sc:name "Protein-ligand interaction report" ;
-            sc:sameAs "http://edamontology.org/data_1566" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1566" ;
+            sc:encodingFormat "http://edamontology.org/format_2054" ;
+            sc:name "Protein-ligand interaction report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0602,
@@ -109026,8 +96843,30 @@ This template aims to create reader-friendly BioRxiv preprints. Inspiration for
     sc:url "http://bioconductor.org/packages/release/bioc/html/bioassayR.html" ;
     biotools:primaryContact "Tyler Backman" .
 
+<https://bio.tools/bioautoml> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0659,
+        edam:topic_0749,
+        edam:topic_3474,
+        edam:topic_3512,
+        edam:topic_3577 ;
+    sc:citation <https://doi.org/10.1093/BIB/BBAC218>,
+        "pmcid:PMC9294424",
+        "pubmed:35753697" ;
+    sc:description "Automated feature engineering and metalearning to predict noncoding RNAs in bacteria." ;
+    sc:featureList edam:operation_3096,
+        edam:operation_3799,
+        edam:operation_3937 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "BioAutoML" ;
+    sc:operatingSystem "Linux" ;
+    sc:softwareHelp <https://bonidia.github.io/BioAutoML/> ;
+    sc:url "https://github.com/Bonidia/BioAutoML" .
+
 <https://bio.tools/biobakery> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0637,
@@ -109046,7 +96885,7 @@ This template aims to create reader-friendly BioRxiv preprints. Inspiration for
     biotools:primaryContact "Curtis Huttenhower" .
 
 <https://bio.tools/biobambam> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:citation <https://doi.org/10.1186/1751-0473-9-13>,
@@ -109060,7 +96899,7 @@ This template aims to create reader-friendly BioRxiv preprints. Inspiration for
     sc:url "http://www.sanger.ac.uk/science/tools/biobambam" .
 
 <https://bio.tools/biobase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2269,
@@ -109083,7 +96922,7 @@ This template aims to create reader-friendly BioRxiv preprints. Inspiration for
     biotools:primaryContact "BioConductor Package Maintainer" .
 
 <https://bio.tools/biobayesnet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0082,
@@ -109101,14 +96940,13 @@ This template aims to create reader-friendly BioRxiv preprints. Inspiration for
 
 <https://bio.tools/biobb> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0883" ;
-            sc:name "Structure" ;
-            sc:sameAs "http://edamontology.org/data_0883" ] ;
+            sc:additionalType "http://edamontology.org/data_0883" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Structure" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3842" ;
-            sc:name "Molecular simulation data" ;
-            sc:sameAs "http://edamontology.org/data_3842" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3842" ;
+            sc:name "Molecular simulation data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3307,
         edam:topic_3314 ;
@@ -109159,8 +96997,33 @@ This template aims to create reader-friendly BioRxiv preprints. Inspiration for
         "Alpha" ;
     sc:url "https://mmb.irbbarcelona.org/biobb" .
 
+<https://bio.tools/biobb-wfs> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0769,
+        edam:topic_2275,
+        edam:topic_3316,
+        edam:topic_3892 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAC380>,
+        "pmcid:PMC9252775",
+        "pubmed:35639735" ;
+    sc:description "BioExcel Building Blocks Workflows (BioBB-Wfs) is a integrated web-based platform for biomolecular simulations." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_0482,
+        edam:operation_2476,
+        edam:operation_3893,
+        edam:operation_3899 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Apache-2.0" ;
+    sc:name "BioBB-Wfs" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://mmb.irbbarcelona.org/biobb-wfs" .
+
 <https://bio.tools/biobeam> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3382 ;
     sc:citation <https://doi.org/10.1371/journal.pcbi.1006079> ;
@@ -109178,7 +97041,7 @@ This template aims to create reader-friendly BioRxiv preprints. Inspiration for
     biotools:primaryContact "Moritz Kreysing" .
 
 <https://bio.tools/biobike> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_2259,
@@ -109200,7 +97063,7 @@ This template aims to create reader-friendly BioRxiv preprints. Inspiration for
     biotools:primaryContact "Jeff Elhai" .
 
 <https://bio.tools/biobin> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0602,
@@ -109221,7 +97084,7 @@ This template aims to create reader-friendly BioRxiv preprints. Inspiration for
     sc:url "http://ritchielab.psu.edu/software/biobin-download" .
 
 <https://bio.tools/bioblender> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0166,
@@ -109236,8 +97099,29 @@ This template aims to create reader-friendly BioRxiv preprints. Inspiration for
     sc:softwareHelp <http://www.bioblender.org/documentation/> ;
     sc:url "http://bioblender.eu/" .
 
+<https://bio.tools/biobox> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:applicationSubCategory edam:topic_0176,
+        edam:topic_0196,
+        edam:topic_2275 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAB785>,
+        "pmcid:PMC8796382",
+        "pubmed:34791029" ;
+    sc:description "Biobox provides a collection of data structures and methods for loading, manipulating and analyzing atomistic and pseudoatomistic structures." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_0478,
+        edam:operation_2476,
+        edam:operation_3891,
+        edam:operation_3907 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "Biobox" ;
+    sc:softwareHelp <https://degiacomi-lab.github.io/biobox/> ;
+    sc:url "https://github.com/degiacom/biobox" ;
+    biotools:primaryContact <https://orcid.org/0000-0003-4672-471X> .
+
 <https://bio.tools/biobroom> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3071,
@@ -109257,7 +97141,7 @@ This template aims to create reader-friendly BioRxiv preprints. Inspiration for
         "John D. Storey" .
 
 <https://bio.tools/biocaddie> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3068,
         edam:topic_3071,
         edam:topic_3303 ;
@@ -109274,7 +97158,7 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
     sc:url "https://github.com/yanshanwang/biocaddie2016mayodata" .
 
 <https://bio.tools/biocancer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0622,
@@ -109294,7 +97178,7 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
     biotools:primaryContact "Karim Mezhoud" .
 
 <https://bio.tools/biocantor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0769 ;
@@ -109309,7 +97193,7 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
     sc:url "https://github.com/InscriptaLabs/BioCantor" .
 
 <https://bio.tools/biocarian> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0219 ;
     sc:citation <https://doi.org/10.1186/s12859-017-1840-4> ;
@@ -109324,7 +97208,7 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
         "Nazar Zaki" .
 
 <https://bio.tools/biocarta> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0602,
@@ -109341,8 +97225,27 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
     sc:url "http://www.biocarta.com/" ;
     biotools:primaryContact "BIOCARTA Support" .
 
+<https://bio.tools/biocaster> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0218,
+        edam:topic_3305,
+        edam:topic_3324,
+        edam:topic_3474,
+        edam:topic_3575 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC497>,
+        "pubmed:35900173" ;
+    sc:description "Automatic Disease Outbreaks Detection from Global News Media." ;
+    sc:featureList edam:operation_0306 ;
+    sc:isAccessibleForFree true ;
+    sc:name "BioCaster" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://biocaster.org" .
+
 <https://bio.tools/biocat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0593,
@@ -109361,7 +97264,7 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
     sc:url "https://github.com/DanilKrivonos/BioCAT" .
 
 <https://bio.tools/biocatalogue> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0780,
         edam:topic_3070,
@@ -109378,7 +97281,7 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
     biotools:primaryContact "Contact form" .
 
 <https://bio.tools/biocatalogue_api> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1093/nar/gkq394> ;
@@ -109393,7 +97296,7 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
     sc:url "https://www.biocatalogue.org/wiki/doku.php?id=public:api#the_biocatalogue_rest_api" .
 
 <https://bio.tools/bioccasestudies> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3305,
@@ -109412,7 +97315,7 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
     biotools:primaryContact "BioConductor Package Maintainer" .
 
 <https://bio.tools/bioccheck> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0769,
@@ -109431,7 +97334,7 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
     biotools:primaryContact "BioConductor Package Maintainer" .
 
 <https://bio.tools/biocellion> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2259,
         edam:topic_3524,
@@ -109445,7 +97348,7 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
     sc:url "http://biocellion.com/" .
 
 <https://bio.tools/biocfilecache> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3489 ;
     sc:description "This package creates a persistent on-disk cache of files that the user can add, update, and retrieve. It is useful for managing resources (such as custom Txdb objects) that are costly or difficult to create, web resources, and data files used across sessions." ;
@@ -109461,7 +97364,7 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
     biotools:primaryContact "Lori Shepherd" .
 
 <https://bio.tools/biocgenerics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -109485,7 +97388,7 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
     biotools:primaryContact "BioConductor Package Maintainer" .
 
 <https://bio.tools/biocgraph> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -109504,8 +97407,33 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
     sc:url "http://bioconductor.org/packages/release/bioc/html/biocGraph.html" ;
     biotools:primaryContact "Florian Hahne" .
 
+<https://bio.tools/biochemddi> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application",
+        "Workflow" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0218,
+        edam:topic_0602,
+        edam:topic_3375,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.3390/BIOLOGY11050758>,
+        "pmcid:PMC9138786",
+        "pubmed:35625486" ;
+    sc:description "BioChemDDI web server is constructed to predict drug-drug interactions, which is compatible with most major browsers, and the parallel speed-up is implemented." ;
+    sc:featureList edam:operation_3092,
+        edam:operation_3927,
+        edam:operation_4009 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "BioChemDDI" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <http://120.77.11.78/BioChemDDI/tutorial/> ;
+    sc:url "http://120.77.11.78/BioChemDDI/" .
+
 <https://bio.tools/biocie> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0218,
         edam:topic_3303,
@@ -109522,7 +97450,7 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
         "Milad Moradi" .
 
 <https://bio.tools/biocinstaller> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0607 ;
@@ -109542,14 +97470,12 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
 
 <https://bio.tools/bioclipse> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2087" ;
-            sc:name "Molecular property" ;
-            sc:sameAs "http://edamontology.org/data_2087" ] ;
+            sc:additionalType "http://edamontology.org/data_2087" ;
+            sc:name "Molecular property" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2087" ;
-            sc:name "Molecular property" ;
-            sc:sameAs "http://edamontology.org/data_2087" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2087" ;
+            sc:name "Molecular property" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3292 ;
     sc:citation <https://doi.org/10.1186/1471-2105-10-397> ;
@@ -109565,7 +97491,7 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
     sc:url "http://bioclipse.net/" .
 
 <https://bio.tools/bioclipse-r> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0202,
@@ -109585,7 +97511,7 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
     biotools:primaryContact "Support" .
 
 <https://bio.tools/bioclojure> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654,
@@ -109601,7 +97527,7 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
     sc:url "https://github.com/s312569/clj-biosequence" .
 
 <https://bio.tools/biocommons> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0099,
@@ -109617,7 +97543,7 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
     sc:url "https://github.com/tzok/BioCommons" .
 
 <https://bio.tools/bioconceptvec> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Ontology" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_3068,
@@ -109636,7 +97562,7 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
     sc:url "https://github.com/ncbi-nlp/BioConceptVec" .
 
 <https://bio.tools/bioconcotk> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0749,
@@ -109655,7 +97581,7 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
     biotools:primaryContact "VJ Carey" .
 
 <https://bio.tools/bioconda> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_2258,
@@ -109672,30 +97598,25 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
 
 <https://bio.tools/bioconductor> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3108" ;
-            sc:name "Experimental measurement" ;
-            sc:sameAs "http://edamontology.org/data_3108" ],
+            sc:additionalType "http://edamontology.org/data_2093" ;
+            sc:name "Data reference" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ],
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:name "Sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2093" ;
-            sc:name "Data reference" ;
-            sc:sameAs "http://edamontology.org/data_2093" ] ;
+            sc:additionalType "http://edamontology.org/data_3108" ;
+            sc:name "Experimental measurement" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2353" ;
-            sc:name "Ontology data" ;
-            sc:sameAs "http://edamontology.org/data_2353" ],
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:name "Report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0950" ;
-            sc:name "Mathematical model" ;
-            sc:sameAs "http://edamontology.org/data_0950" ],
+            sc:additionalType "http://edamontology.org/data_2353" ;
+            sc:name "Ontology data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0950" ;
+            sc:encodingFormat "http://edamontology.org/format_2032" ;
+            sc:name "Mathematical model" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_2269,
@@ -109715,7 +97636,7 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
     sc:url "http://www.bioconductor.org" .
 
 <https://bio.tools/biocontainers> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0091,
@@ -109736,7 +97657,7 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
     biotools:primaryContact "Yasset Perez-Riverol" .
 
 <https://bio.tools/biocontext> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0218,
         edam:topic_3047,
@@ -109752,7 +97673,7 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
     sc:url "http://biocontext.org/" .
 
 <https://bio.tools/biocor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2259,
@@ -109772,7 +97693,7 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
     biotools:primaryContact "Lluís Revilla Sancho" .
 
 <https://bio.tools/biocparallel> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0080 ;
@@ -109790,7 +97711,7 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
     biotools:primaryContact "BioConductor Package Maintainer" .
 
 <https://bio.tools/biocsklearn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3474 ;
     sc:description "This package provides interfaces to selected sklearn elements, and demonstrates fault tolerant use of python modules requiring extensive iteration." ;
@@ -109807,14 +97728,14 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
 
 <https://bio.tools/biocstyle> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0958" ;
-            sc:name "Tool metadata" ;
-            sc:sameAs "http://edamontology.org/data_0958" ] ;
+            sc:additionalType "http://edamontology.org/data_0958" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Tool metadata" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0958" ;
-            sc:name "Tool metadata" ;
-            sc:sameAs "http://edamontology.org/data_0958" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0958" ;
+            sc:encodingFormat "http://edamontology.org/format_3508" ;
+            sc:name "Tool metadata" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3068 ;
@@ -109832,7 +97753,7 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
     biotools:primaryContact "BioConductor Package Maintainer" .
 
 <https://bio.tools/biocviews> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3372 ;
@@ -109850,7 +97771,7 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
     biotools:primaryContact "BioConductor Package Maintainer" .
 
 <https://bio.tools/biocworkflowtools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0769 ;
     sc:description "Provides functions to ease the transition between Rmarkdown and LaTeX documents when authoring a Bioconductor Workflow." ;
@@ -109867,7 +97788,7 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
     biotools:primaryContact "Mike Smith" .
 
 <https://bio.tools/biocyc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -109890,7 +97811,7 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
     biotools:primaryContact "BioCyC Support" .
 
 <https://bio.tools/biodataome> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0605,
         edam:topic_3391 ;
@@ -109904,7 +97825,7 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
     sc:url "http://dataome.mensxmachina.org/" .
 
 <https://bio.tools/biodb-loader> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_3489 ;
@@ -109915,8 +97836,25 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
         "Windows" ;
     sc:url "http://www.franz.com/services/conferences_seminars/ismb2000/karp.biodb.lhtml" .
 
+<https://bio.tools/biodica> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Desktop application" ;
+    sc:applicationSubCategory edam:topic_0769 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC204>,
+        "pubmed:35462395" ;
+    sc:description "A computational environment for Independent Component Analysis of omics data." ;
+    sc:featureList edam:operation_0337 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "BIODICA" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://sysbio-curie.github.io/biodica-environment/docs/home/> ;
+    sc:url "https://sysbio-curie.github.io/biodica-environment/" .
+
 <https://bio.tools/biodist> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0081 ;
@@ -109934,7 +97872,7 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
     biotools:primaryContact "BioConductor Package Maintainer" .
 
 <https://bio.tools/biodrugscreen> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -109955,7 +97893,7 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
     biotools:primaryContact "Samy O. Meroueh" .
 
 <https://bio.tools/biodry> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_0780 ;
@@ -109971,7 +97909,7 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
     biotools:primaryContact "Wilson Lara" .
 
 <https://bio.tools/biodwh2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_3366 ;
@@ -109991,7 +97929,7 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
     biotools:primaryContact <https://orcid.org/0000-0001-9846-7212> .
 
 <https://bio.tools/biodynamo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2259,
@@ -110007,7 +97945,7 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
     sc:url "http://www.biodynamo.org" .
 
 <https://bio.tools/bioecs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0089,
@@ -110026,7 +97964,7 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
     biotools:primaryContact "Support" .
 
 <https://bio.tools/bioentity2vec> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_2259,
@@ -110043,7 +97981,7 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
     sc:url "https://github.com/CocoGzh/Bioentity2vec" .
 
 <https://bio.tools/bioerp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3303,
@@ -110062,46 +98000,46 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
 
 <https://bio.tools/bioexcel_building_blocks_rest_api_biobb-api> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1459" ;
-            sc:name "Nucleic acid structure" ;
-            sc:sameAs "http://edamontology.org/data_1459" ],
+            sc:additionalType "http://edamontology.org/data_3870" ;
+            sc:encodingFormat "http://edamontology.org/format_3650" ;
+            sc:name "Trajectory data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ],
+            sc:additionalType "http://edamontology.org/data_1459" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Nucleic acid structure" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3870" ;
-            sc:name "Trajectory data" ;
-            sc:sameAs "http://edamontology.org/data_3870" ],
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein structure" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ] ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Nucleic acid sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2085" ;
-            sc:name "Structure report" ;
-            sc:sameAs "http://edamontology.org/data_2085" ],
+            sc:additionalType "http://edamontology.org/data_2085" ;
+            sc:encodingFormat "http://edamontology.org/format_1637" ;
+            sc:name "Structure report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ],
+            sc:additionalType "http://edamontology.org/data_2526" ;
+            sc:encodingFormat "http://edamontology.org/format_1637" ;
+            sc:name "Text data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ],
+            sc:additionalType "http://edamontology.org/data_3870" ;
+            sc:encodingFormat "http://edamontology.org/format_3650" ;
+            sc:name "Trajectory data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1459" ;
-            sc:name "Nucleic acid structure" ;
-            sc:sameAs "http://edamontology.org/data_1459" ],
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3603" ;
+            sc:name "Image" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2526" ;
-            sc:name "Text data" ;
-            sc:sameAs "http://edamontology.org/data_2526" ],
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein structure" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3870" ;
-            sc:name "Trajectory data" ;
-            sc:sameAs "http://edamontology.org/data_3870" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1459" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Nucleic acid structure" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0081,
@@ -110137,18 +98075,18 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
 
 <https://bio.tools/bioexcel_building_blocks_tutorials_abc_md_setup> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3494" ;
-            sc:name "DNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3494" ] ;
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "DNA sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3872" ;
-            sc:name "Topology data" ;
-            sc:sameAs "http://edamontology.org/data_3872" ],
+            sc:additionalType "http://edamontology.org/data_3870" ;
+            sc:encodingFormat "http://edamontology.org/format_3650" ;
+            sc:name "Trajectory data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3870" ;
-            sc:name "Trajectory data" ;
-            sc:sameAs "http://edamontology.org/data_3870" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3872" ;
+            sc:encodingFormat "http://edamontology.org/format_3881" ;
+            sc:name "Topology data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0176 ;
@@ -110174,18 +98112,18 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
 
 <https://bio.tools/bioexcel_building_blocks_tutorials_amber_constant_ph_md_setup> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ] ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein structure" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3870" ;
-            sc:name "Trajectory data" ;
-            sc:sameAs "http://edamontology.org/data_3870" ],
+            sc:additionalType "http://edamontology.org/data_3870" ;
+            sc:encodingFormat "http://edamontology.org/format_3650" ;
+            sc:name "Trajectory data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3872" ;
-            sc:name "Topology data" ;
-            sc:sameAs "http://edamontology.org/data_3872" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3872" ;
+            sc:encodingFormat "http://edamontology.org/format_3881" ;
+            sc:name "Topology data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0176,
         edam:topic_2814 ;
@@ -110211,14 +98149,14 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
 
 <https://bio.tools/bioexcel_building_blocks_tutorials_automatic_ligand_parameterization> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1463" ;
-            sc:name "Small molecule structure" ;
-            sc:sameAs "http://edamontology.org/data_1463" ] ;
+            sc:additionalType "http://edamontology.org/data_1463" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Small molecule structure" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3872" ;
-            sc:name "Topology data" ;
-            sc:sameAs "http://edamontology.org/data_3872" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3872" ;
+            sc:encodingFormat "http://edamontology.org/format_3880" ;
+            sc:name "Topology data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0176 ;
@@ -110243,18 +98181,18 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
 
 <https://bio.tools/bioexcel_building_blocks_tutorials_command-line_workflows> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ] ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein structure" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3870" ;
-            sc:name "Trajectory data" ;
-            sc:sameAs "http://edamontology.org/data_3870" ],
+            sc:additionalType "http://edamontology.org/data_3872" ;
+            sc:encodingFormat "http://edamontology.org/format_3880" ;
+            sc:name "Topology data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3872" ;
-            sc:name "Topology data" ;
-            sc:sameAs "http://edamontology.org/data_3872" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3870" ;
+            sc:encodingFormat "http://edamontology.org/format_3910" ;
+            sc:name "Trajectory data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0176,
@@ -110281,18 +98219,18 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
 
 <https://bio.tools/bioexcel_building_blocks_tutorials_common_workflow_language_with_biobb> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ] ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein structure" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3872" ;
-            sc:name "Topology data" ;
-            sc:sameAs "http://edamontology.org/data_3872" ],
+            sc:additionalType "http://edamontology.org/data_3872" ;
+            sc:encodingFormat "http://edamontology.org/format_3880" ;
+            sc:name "Topology data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3870" ;
-            sc:name "Trajectory data" ;
-            sc:sameAs "http://edamontology.org/data_3870" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3870" ;
+            sc:encodingFormat "http://edamontology.org/format_3910" ;
+            sc:name "Trajectory data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0176,
@@ -110319,26 +98257,26 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
 
 <https://bio.tools/bioexcel_building_blocks_tutorials_mutation_free_energy_calculations> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3870" ;
-            sc:name "Trajectory data" ;
-            sc:sameAs "http://edamontology.org/data_3870" ],
+            sc:additionalType "http://edamontology.org/data_3872" ;
+            sc:encodingFormat "http://edamontology.org/format_3880" ;
+            sc:name "Topology data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3872" ;
-            sc:name "Topology data" ;
-            sc:sameAs "http://edamontology.org/data_3872" ] ;
+            sc:additionalType "http://edamontology.org/data_3870" ;
+            sc:encodingFormat "http://edamontology.org/format_3875" ;
+            sc:name "Trajectory data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3870" ;
-            sc:name "Trajectory data" ;
-            sc:sameAs "http://edamontology.org/data_3870" ],
+            sc:additionalType "http://edamontology.org/data_3779" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Annotated text" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3779" ;
-            sc:name "Annotated text" ;
-            sc:sameAs "http://edamontology.org/data_3779" ],
+            sc:additionalType "http://edamontology.org/data_3870" ;
+            sc:encodingFormat "http://edamontology.org/format_3910" ;
+            sc:name "Trajectory data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3905" ;
-            sc:name "Histogram" ;
-            sc:sameAs "http://edamontology.org/data_3905" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3905" ;
+            sc:encodingFormat "http://edamontology.org/format_3603" ;
+            sc:name "Histogram" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0176,
         edam:topic_3120 ;
@@ -110365,18 +98303,18 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
 
 <https://bio.tools/bioexcel_building_blocks_tutorials_protein-ligand_complex_md_setup> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1461" ;
-            sc:name "Protein-ligand complex" ;
-            sc:sameAs "http://edamontology.org/data_1461" ] ;
+            sc:additionalType "http://edamontology.org/data_1461" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein-ligand complex" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3872" ;
-            sc:name "Topology data" ;
-            sc:sameAs "http://edamontology.org/data_3872" ],
+            sc:additionalType "http://edamontology.org/data_3870" ;
+            sc:encodingFormat "http://edamontology.org/format_3910" ;
+            sc:name "Trajectory data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3870" ;
-            sc:name "Trajectory data" ;
-            sc:sameAs "http://edamontology.org/data_3870" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3872" ;
+            sc:encodingFormat "http://edamontology.org/format_3880" ;
+            sc:name "Topology data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0176,
@@ -110404,18 +98342,18 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
 
 <https://bio.tools/bioexcel_building_blocks_tutorials_protein-ligand_complex_md_setup_amber_version> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ] ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein structure" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3872" ;
-            sc:name "Topology data" ;
-            sc:sameAs "http://edamontology.org/data_3872" ],
+            sc:additionalType "http://edamontology.org/data_3870" ;
+            sc:encodingFormat "http://edamontology.org/format_3650" ;
+            sc:name "Trajectory data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3870" ;
-            sc:name "Trajectory data" ;
-            sc:sameAs "http://edamontology.org/data_3870" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3872" ;
+            sc:encodingFormat "http://edamontology.org/format_3881" ;
+            sc:name "Topology data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0176,
@@ -110442,18 +98380,18 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
 
 <https://bio.tools/bioexcel_building_blocks_tutorials_protein-ligand_docking> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1463" ;
-            sc:name "Small molecule structure" ;
-            sc:sameAs "http://edamontology.org/data_1463" ],
+            sc:additionalType "http://edamontology.org/data_1463" ;
+            sc:encodingFormat "http://edamontology.org/format_3814" ;
+            sc:name "Small molecule structure" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ] ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein structure" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1461" ;
-            sc:name "Protein-ligand complex" ;
-            sc:sameAs "http://edamontology.org/data_1461" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1461" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein-ligand complex" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_2275 ;
@@ -110479,18 +98417,18 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
 
 <https://bio.tools/bioexcel_building_blocks_tutorials_protein_md_setup> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ] ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein structure" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3872" ;
-            sc:name "Topology data" ;
-            sc:sameAs "http://edamontology.org/data_3872" ],
+            sc:additionalType "http://edamontology.org/data_3872" ;
+            sc:encodingFormat "http://edamontology.org/format_3880" ;
+            sc:name "Topology data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3870" ;
-            sc:name "Trajectory data" ;
-            sc:sameAs "http://edamontology.org/data_3870" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3870" ;
+            sc:encodingFormat "http://edamontology.org/format_3910" ;
+            sc:name "Trajectory data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0176,
@@ -110517,18 +98455,18 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
 
 <https://bio.tools/bioexcel_building_blocks_tutorials_protein_md_setup_amber_version> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ] ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein structure" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3870" ;
-            sc:name "Trajectory data" ;
-            sc:sameAs "http://edamontology.org/data_3870" ],
+            sc:additionalType "http://edamontology.org/data_3870" ;
+            sc:encodingFormat "http://edamontology.org/format_3650" ;
+            sc:name "Trajectory data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3872" ;
-            sc:name "Topology data" ;
-            sc:sameAs "http://edamontology.org/data_3872" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3872" ;
+            sc:encodingFormat "http://edamontology.org/format_3881" ;
+            sc:name "Topology data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0176,
@@ -110556,18 +98494,18 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
 
 <https://bio.tools/bioexcel_building_blocks_tutorials_protein_md_setup_tutorial_through_rest_api> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ] ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein structure" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3870" ;
-            sc:name "Trajectory data" ;
-            sc:sameAs "http://edamontology.org/data_3870" ],
+            sc:additionalType "http://edamontology.org/data_3870" ;
+            sc:encodingFormat "http://edamontology.org/format_3910" ;
+            sc:name "Trajectory data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3872" ;
-            sc:name "Topology data" ;
-            sc:sameAs "http://edamontology.org/data_3872" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3872" ;
+            sc:encodingFormat "http://edamontology.org/format_3880" ;
+            sc:name "Topology data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0081,
@@ -110594,22 +98532,22 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
 
 <https://bio.tools/bioexcel_building_blocks_tutorials_structural_dna_helical_parameters_from_md_trajectory> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3870" ;
-            sc:name "Trajectory data" ;
-            sc:sameAs "http://edamontology.org/data_3870" ] ;
+            sc:additionalType "http://edamontology.org/data_3870" ;
+            sc:encodingFormat "http://edamontology.org/format_3650" ;
+            sc:name "Trajectory data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0912" ;
-            sc:name "Nucleic acid property" ;
-            sc:sameAs "http://edamontology.org/data_0912" ],
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3603" ;
+            sc:name "Image" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3905" ;
-            sc:name "Histogram" ;
-            sc:sameAs "http://edamontology.org/data_3905" ],
+            sc:additionalType "http://edamontology.org/data_3905" ;
+            sc:encodingFormat "http://edamontology.org/format_1637" ;
+            sc:name "Histogram" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0912" ;
+            sc:encodingFormat "http://edamontology.org/format_1637" ;
+            sc:name "Nucleic acid property" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0097 ;
     sc:author <https://orcid.org/0000-0002-8291-8071>,
@@ -110634,46 +98572,46 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
 
 <https://bio.tools/bioexcel_building_blocks_workflows_biobb-wfs> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ],
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein structure" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1459" ;
-            sc:name "Nucleic acid structure" ;
-            sc:sameAs "http://edamontology.org/data_1459" ],
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Nucleic acid sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3870" ;
-            sc:name "Trajectory data" ;
-            sc:sameAs "http://edamontology.org/data_3870" ],
+            sc:additionalType "http://edamontology.org/data_1459" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Nucleic acid structure" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ] ;
+            sc:additionalType "http://edamontology.org/data_3870" ;
+            sc:encodingFormat "http://edamontology.org/format_3650" ;
+            sc:name "Trajectory data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ],
+            sc:additionalType "http://edamontology.org/data_3870" ;
+            sc:encodingFormat "http://edamontology.org/format_3650" ;
+            sc:name "Trajectory data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ],
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3603" ;
+            sc:name "Image" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2526" ;
-            sc:name "Text data" ;
-            sc:sameAs "http://edamontology.org/data_2526" ],
+            sc:additionalType "http://edamontology.org/data_1459" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Nucleic acid structure" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1459" ;
-            sc:name "Nucleic acid structure" ;
-            sc:sameAs "http://edamontology.org/data_1459" ],
+            sc:additionalType "http://edamontology.org/data_2526" ;
+            sc:encodingFormat "http://edamontology.org/format_1637" ;
+            sc:name "Text data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2085" ;
-            sc:name "Structure report" ;
-            sc:sameAs "http://edamontology.org/data_2085" ],
+            sc:additionalType "http://edamontology.org/data_2085" ;
+            sc:encodingFormat "http://edamontology.org/format_1637" ;
+            sc:name "Structure report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3870" ;
-            sc:name "Trajectory data" ;
-            sc:sameAs "http://edamontology.org/data_3870" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein structure" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Bioinformatics portal",
         "Web application",
         "Workflow" ;
@@ -110709,14 +98647,14 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
 
 <https://bio.tools/bioexcel_seqqc> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3497" ;
-            sc:name "DNA sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_3497" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3497" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "DNA sequence (raw)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library",
         "Workflow" ;
@@ -110740,7 +98678,7 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
     biotools:primaryContact "Darren White" .
 
 <https://bio.tools/bioextract> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0091,
@@ -110762,7 +98700,7 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
     biotools:primaryContact "Contact Form" .
 
 <https://bio.tools/bioface> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0099,
@@ -110775,7 +98713,7 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
     sc:url "http://y-s.wikidot.com/bioface" .
 
 <https://bio.tools/biofactoid> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0218,
@@ -110794,7 +98732,7 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
     biotools:primaryContact "Biofactoid" .
 
 <https://bio.tools/biofilm-growth-intensity> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3318,
@@ -110812,7 +98750,7 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
     biotools:primaryContact "Curtis Larimer" .
 
 <https://bio.tools/biofilmanalyzer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3382 ;
     sc:citation <https://doi.org/10.1371/journal.pone.0193267> ;
@@ -110825,7 +98763,7 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
     biotools:primaryContact "Airat R. Kayumov" .
 
 <https://bio.tools/biofouling> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:description "Biofouling is a MATLAB function will output the typical required values for mussel growth on structures." ;
     sc:isAccessibleForFree true ;
@@ -110838,7 +98776,7 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
     biotools:primaryContact "Melanie MacBain" .
 
 <https://bio.tools/biofvm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0176,
         edam:topic_0602,
@@ -110855,7 +98793,7 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
     biotools:primaryContact "Paul Macklin, Ph.D" .
 
 <https://bio.tools/biogeography-optimizer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3315,
@@ -110870,8 +98808,25 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
     sc:url "https://www.mathworks.com/matlabcentral/fileexchange/47311-biogeography-based-optimizer-bbo-for-training-multi-layer-perceptron-mlp-breast-cancer-dataset" ;
     biotools:primaryContact "Seyedali Mirjalili" .
 
+<https://bio.tools/biogeom> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0610,
+        edam:topic_0780,
+        edam:topic_3500 ;
+    sc:citation <https://doi.org/10.1111/NYAS.14862>,
+        "pubmed:35879250" ;
+    sc:description "An R package for simulating and fitting natural shapes." ;
+    sc:featureList edam:operation_2950 ;
+    sc:license "GPL-3.0" ;
+    sc:name "biogeom" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/cran/biogeom" .
+
 <https://bio.tools/biogitflow> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0769,
@@ -110883,7 +98838,7 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
     sc:url "https://biogitflow.readthedocs.io" .
 
 <https://bio.tools/biogrid> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0602,
@@ -110904,7 +98859,7 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
     biotools:primaryContact "BioGRID Support" .
 
 <https://bio.tools/biogridrunner> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0091 ;
     sc:description "BioGridRunner is a distributed computing application for bioinformatics, incorporating directory services (data and software), grid computing methods (security, authentication, data transport and remote jobs), and gene sequence and genomic data processing methods." ;
@@ -110918,7 +98873,7 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
     sc:url "http://iubio.bio.indiana.edu/grid/runner/" .
 
 <https://bio.tools/biohansel> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2885,
@@ -110936,7 +98891,7 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
     sc:url "https://github.com/phac-nml/biohansel" .
 
 <https://bio.tools/biohel> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_3053 ;
@@ -110950,7 +98905,7 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
     sc:url "http://ico2s.org/software/biohel.html" .
 
 <https://bio.tools/bioidmapper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0102 ;
     sc:citation <https://doi.org/10.1109/BMEI.2010.5639785> ;
@@ -110965,14 +98920,12 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
 
 <https://bio.tools/bioimageoperation> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3424" ;
-            sc:name "Raw image" ;
-            sc:sameAs "http://edamontology.org/data_3424" ] ;
+            sc:additionalType "http://edamontology.org/data_3424" ;
+            sc:name "Raw image" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0621,
@@ -110992,7 +98945,7 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
     biotools:primaryContact <https://orcid.org/0000-0001-9704-2925> .
 
 <https://bio.tools/bioinfo3d> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0081,
@@ -111013,13 +98966,28 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
     sc:url "http://bioinfo3d.cs.tau.ac.il/" ;
     biotools:primaryContact "BioInfo3D team" .
 
-<https://bio.tools/bioinformatics_services> a sc:SoftwareApplication ;
-    sc:description "CD Genomics’ bioinformatics services cover a wide range of genomic applications, including genomics, transcriptomics, epigenomics, and microarray. CD Genomics provides statistical and bioinformatic data analysis services that help our customers to explain large amounts of data that generated by sequencing, genotyping, and microarray experiments." ;
-    sc:name "Bioinformatics Services" ;
-    sc:url "https://www.cd-genomics.com/Bioinformatics-Services.html" .
+<https://bio.tools/bioinfograph> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0091,
+        edam:topic_0196,
+        edam:topic_3382 ;
+    sc:citation <https://doi.org/10.3389/FGENE.2021.784531>,
+        "pmcid:PMC8766334",
+        "pubmed:35069687" ;
+    sc:description "An Online Tool to Design and Display Multi-Panel Scientific Figure Interactively." ;
+    sc:featureList edam:operation_0310,
+        edam:operation_0337 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "bioInfograph" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://baohongz.github.io/bioInfograph/index.html" .
 
 <https://bio.tools/bioinformatics_toolkit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0081,
@@ -111041,7 +99009,7 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
     biotools:primaryContact "MPI-toolkit feedback" .
 
 <https://bio.tools/bioisis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_1317 ;
     sc:citation <https://doi.org/10.1021/bi9019934> ;
@@ -111057,7 +99025,7 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
     sc:url "http://www.bioisis.net/" .
 
 <https://bio.tools/biojava> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_3070,
@@ -111074,7 +99042,7 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
     biotools:primaryContact "General contact" .
 
 <https://bio.tools/biojava-modfinde> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0166,
         edam:topic_0601,
@@ -111091,7 +99059,7 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
     biotools:primaryContact "Peter W. Rose" .
 
 <https://bio.tools/biojazz> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2259,
@@ -111105,7 +99073,7 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
     sc:url "http://oss-lab.github.io/biojazz" .
 
 <https://bio.tools/biojs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0092,
@@ -111121,7 +99089,7 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
     sc:url "http://biojs.net/" .
 
 <https://bio.tools/biojs-alg-seqregion> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0160 ;
@@ -111139,7 +99107,7 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
     biotools:primaryContact "Ricardo H. Ramirez-Gonzalez" .
 
 <https://bio.tools/biojs-io-annots> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.7554/eLife.07009> ;
@@ -111156,14 +99124,14 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
 
 <https://bio.tools/biojs-io-blast> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1192" ;
-            sc:name "Tool name (BLAST)" ;
-            sc:sameAs "http://edamontology.org/data_1192" ] ;
+            sc:additionalType "http://edamontology.org/data_1192" ;
+            sc:encodingFormat "http://edamontology.org/format_3331" ;
+            sc:name "Tool name (BLAST)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1192" ;
-            sc:name "Tool name (BLAST)" ;
-            sc:sameAs "http://edamontology.org/data_1192" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1192" ;
+            sc:encodingFormat "http://edamontology.org/format_3464" ;
+            sc:name "Tool name (BLAST)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_3365 ;
@@ -111184,10 +99152,10 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
 
 <https://bio.tools/biojs-io-clustal> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1982" ;
+            sc:name "Sequence alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.7554/eLife.07009> ;
@@ -111203,7 +99171,7 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
     biotools:primaryContact "greenify" .
 
 <https://bio.tools/biojs-io-fasta> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.7554/eLife.07009> ;
@@ -111220,14 +99188,14 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
 
 <https://bio.tools/biojs-io-gff> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ] ;
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:encodingFormat "http://edamontology.org/format_1975" ;
+            sc:name "Sequence features" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3464" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.7554/eLife.07009> ;
@@ -111245,7 +99213,7 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
     biotools:primaryContact "greenify" .
 
 <https://bio.tools/biojs-io-graduates> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_3071 ;
@@ -111263,7 +99231,7 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
     biotools:primaryContact "BioJS" .
 
 <https://bio.tools/biojs-io-matrix> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0092 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btt100> ;
@@ -111278,7 +99246,7 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
     biotools:primaryContact "greenify" .
 
 <https://bio.tools/biojs-io-newick> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0092 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btt100> ;
@@ -111296,7 +99264,7 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
     biotools:primaryContact "David Dao" .
 
 <https://bio.tools/biojs-io-sam> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3071,
         edam:topic_3168 ;
@@ -111314,7 +99282,7 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
     biotools:primaryContact "Ricardo H. Ramirez-Gonzalez" .
 
 <https://bio.tools/biojs-io-snipspector> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2885 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btt100> ;
@@ -111331,7 +99299,7 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
     biotools:primaryContact "BioJS" .
 
 <https://bio.tools/biojs-legacy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0091 ;
     sc:citation <https://doi.org/10.7554/eLife.07009> ;
@@ -111346,7 +99314,7 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
     biotools:primaryContact "BioJS" .
 
 <https://bio.tools/biojs-meta-parser> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.7554/eLife.07009> ;
@@ -111362,7 +99330,7 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
     biotools:primaryContact "BioJS" .
 
 <https://bio.tools/biojs-meta-vis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0092 ;
@@ -111380,7 +99348,7 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
     biotools:primaryContact "BioJS" .
 
 <https://bio.tools/biojs-model> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0091 ;
     sc:citation <https://doi.org/10.7554/eLife.07009> ;
@@ -111397,7 +99365,7 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
     biotools:primaryContact "BioJS" .
 
 <https://bio.tools/biojs-rest-ensembl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3077 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btt100> ;
@@ -111417,10 +99385,9 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
 
 <https://bio.tools/biojs-stat-seqs> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3497" ;
-            sc:name "DNA sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_3497" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3497" ;
+            sc:name "DNA sequence (raw)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.7554/eLife.07009> ;
@@ -111438,7 +99405,7 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
     biotools:primaryContact "greenify" .
 
 <https://bio.tools/biojs-vis-chromosome> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0092 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btt100> ;
@@ -111454,7 +99421,7 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
     biotools:primaryContact "Gustavo A. Salazar" .
 
 <https://bio.tools/biojs-vis-circularfv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0092 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btt100> ;
@@ -111471,7 +99438,7 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
     biotools:primaryContact "jmVillaveces" .
 
 <https://bio.tools/biojs-vis-circularnet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3071 ;
@@ -111488,7 +99455,7 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
     biotools:primaryContact "greenify" .
 
 <https://bio.tools/biojs-vis-diseaseinfo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0092,
@@ -111506,7 +99473,7 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
     biotools:primaryContact "Xavier Watkins" .
 
 <https://bio.tools/biojs-vis-easy_features> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0092 ;
     sc:citation <https://doi.org/10.7554/eLife.07009> ;
@@ -111523,10 +99490,10 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
 
 <https://bio.tools/biojs-vis-feature> a sc:SoftwareApplication ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3464" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0092 ;
     sc:citation <https://doi.org/10.7554/eLife.07009> ;
@@ -111545,7 +99512,7 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
     biotools:primaryContact "ljgarcia" .
 
 <https://bio.tools/biojs-vis-gprofiler> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_3053 ;
@@ -111563,7 +99530,7 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
     biotools:primaryContact "Tambet Arak" .
 
 <https://bio.tools/biojs-vis-heatmap-d3> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0203 ;
@@ -111581,14 +99548,13 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
 
 <https://bio.tools/biojs-vis-hgv> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3464" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1274" ;
-            sc:name "Map" ;
-            sc:sameAs "http://edamontology.org/data_1274" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1274" ;
+            sc:name "Map" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_2885 ;
@@ -111607,7 +99573,7 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
     biotools:primaryContact "Saket Choudhary" .
 
 <https://bio.tools/biojs-vis-hpafeature> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0108 ;
     sc:citation <https://doi.org/10.7554/eLife.07009> ;
@@ -111623,7 +99589,7 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
     biotools:primaryContact "Rafael C Jimenez" .
 
 <https://bio.tools/biojs-vis-inchlib> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0219 ;
@@ -111640,7 +99606,7 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
     biotools:primaryContact "Ctibor S?kuta" .
 
 <https://bio.tools/biojs-vis-interactions-d3> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0128,
@@ -111659,14 +99625,12 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
 
 <https://bio.tools/biojs-vis-keggviewer> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2343" ;
-            sc:name "Pathway ID (KEGG)" ;
-            sc:sameAs "http://edamontology.org/data_2343" ] ;
+            sc:additionalType "http://edamontology.org/data_2343" ;
+            sc:name "Pathway ID (KEGG)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:name "Pathway or network" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0092 ;
     sc:citation <https://doi.org/10.12688/f1000research.3-43.v1>,
@@ -111685,7 +99649,7 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
     biotools:primaryContact "José Villaveces" .
 
 <https://bio.tools/biojs-vis-pdbviewer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0081 ;
     sc:citation <https://doi.org/10.7554/eLife.07009> ;
@@ -111701,7 +99665,7 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
     biotools:primaryContact "Ian Sillitoe" .
 
 <https://bio.tools/biojs-vis-pmccitation> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3068,
         edam:topic_3077 ;
@@ -111719,7 +99683,7 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
     biotools:primaryContact "Francesco Talo" .
 
 <https://bio.tools/biojs-vis-sam> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0092 ;
@@ -111736,7 +99700,7 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
     biotools:primaryContact "Ricardo H. Ramirez-Gonzalez" .
 
 <https://bio.tools/biojs-vis-sequence> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.7554/eLife.07009> ;
@@ -111753,7 +99717,7 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
     biotools:primaryContact "BioJS" .
 
 <https://bio.tools/biojs-vis-wigexplorer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0092 ;
     sc:citation <https://doi.org/10.12688/f1000research.3-53.v3> ;
@@ -111770,7 +99734,7 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
     biotools:primaryContact "Anil S. Thanki" .
 
 <https://bio.tools/biokc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API" ;
     sc:applicationSubCategory edam:topic_0219,
         edam:topic_0602,
@@ -111785,8 +99749,29 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
     sc:name "BioKC" ;
     sc:url "https://biokc.pages.uni.lu/roadmap/" .
 
+<https://bio.tools/biokit> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library",
+        "Suite" ;
+    sc:applicationSubCategory edam:topic_0194,
+        edam:topic_0196,
+        edam:topic_0203,
+        edam:topic_0621,
+        edam:topic_0769 ;
+    sc:citation <https://doi.org/10.1101/2021.10.02.462868> ;
+    sc:description "BioKIT is a versatile toolkit for processing and analyzing diverse types of sequence data. BioKIT is a UNIX shell toolkit for processing molecular sequence data." ;
+    sc:featureList edam:operation_0286,
+        edam:operation_0525,
+        edam:operation_3192 ;
+    sc:license "MIT" ;
+    sc:name "BioKIT" ;
+    sc:softwareHelp <https://jlsteenwyk.com/BioKIT> ;
+    sc:url "https://anaconda.org/jlsteenwyk/jlsteenwyk-biokit" ;
+    biotools:primaryContact <https://orcid.org/0000-0002-7248-6551>,
+        <https://orcid.org/0000-0002-8436-595X> .
+
 <https://bio.tools/biolabeler> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API" ;
     sc:applicationSubCategory edam:topic_3071,
         edam:topic_3473 ;
@@ -111801,7 +99786,7 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
     sc:url "http://biolabeler.com/" .
 
 <https://bio.tools/biolad-db> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0605,
@@ -111817,14 +99802,14 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
 
 <https://bio.tools/biolccc> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Protein sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2979" ;
-            sc:name "Peptide property" ;
-            sc:sameAs "http://edamontology.org/data_2979" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2979" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Peptide property" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -111839,13 +99824,13 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
     sc:url "http://theorchromo.ru/" .
 
 <https://bio.tools/biolib> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "BioLib is a tool for building webservers. The platform allows developers to create webservers without having to build front-end or setting up and maintaining server infrastructure." ;
     sc:name "BioLib" ;
     sc:url "https://biolib.com" .
 
 <https://bio.tools/biolincc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_3305,
         edam:topic_3335,
@@ -111863,7 +99848,7 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
     biotools:primaryContact <https://orcid.org/0000-0001-5588-9458> .
 
 <https://bio.tools/biolit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0089 ;
@@ -111875,7 +99860,7 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
     sc:url "http://biolit.ucsd.edu" .
 
 <https://bio.tools/biologer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0780,
         edam:topic_3050,
@@ -111891,7 +99876,7 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
     sc:url "https://biologer.org" .
 
 <https://bio.tools/biologicalnetworks> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0102,
@@ -111908,16 +99893,30 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
     sc:name "BiologicalNetworks" ;
     sc:url "http://brak.sdsc.edu/pub/BiologicalNetworks/" .
 
+<https://bio.tools/biolqm> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:citation <https://doi.org/10.1186/1752-0509-7-135>,
+        "pmcid:PMC3892043",
+        "pubmed:24321545" ;
+    sc:description "A model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools" ;
+    sc:isAccessibleForFree true ;
+    sc:license "LGPL-3.0" ;
+    sc:name "BioLQM" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <http://www.colomoto.org/biolqm/apidocs/>,
+        <http://www.colomoto.org/biolqm/doc/> ;
+    sc:url "http://www.colomoto.org/biolqm/index.html" .
+
 <https://bio.tools/biomaj> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1052" ;
-            sc:name "URL" ;
-            sc:sameAs "http://edamontology.org/data_1052" ] ;
+            sc:additionalType "http://edamontology.org/data_1052" ;
+            sc:name "URL" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0955" ;
-            sc:name "Data index" ;
-            sc:sameAs "http://edamontology.org/data_0955" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0955" ;
+            sc:name "Data index" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_3071 ;
@@ -111938,7 +99937,7 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
     biotools:primaryContact "GenOuest platform" .
 
 <https://bio.tools/biomarker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0634,
@@ -111955,7 +99954,7 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
     sc:url "http://www.liuzlab.org/?page_id=547" .
 
 <https://bio.tools/biomart> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0621,
@@ -111985,7 +99984,7 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
     biotools:primaryContact "Mike Smith" .
 
 <https://bio.tools/biomart_central> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0621,
@@ -112006,7 +100005,7 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
     biotools:primaryContact "Arek Kasprzyk" .
 
 <https://bio.tools/biomart_mart_service> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1093/nar/gkv350> ;
@@ -112021,7 +100020,7 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
     sc:url "http://www.biomart.org/martservice_9.html" .
 
 <https://bio.tools/biomartr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0622,
@@ -112040,7 +100039,7 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
     biotools:primaryContact "Hajk-Georg Drost" .
 
 <https://bio.tools/biomas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3174 ;
     sc:description "A bioinformatic pipeline designed to support biomolecular researchers involved in taxonomic studies of environmental microbial communities by a completely automated workflow." ;
@@ -112058,30 +100057,30 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
 
 <https://bio.tools/biomas_bioinformatic_analysis_of_metagenomic_amplicons> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3494" ;
-            sc:name "DNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3494" ],
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "DNA sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1383" ;
-            sc:name "Nucleic acid sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_1383" ],
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "DNA sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3494" ;
-            sc:name "DNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3494" ] ;
+            sc:additionalType "http://edamontology.org/data_1383" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
+            sc:name "Nucleic acid sequence alignment" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1383" ;
-            sc:name "Nucleic acid sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_1383" ],
+            sc:additionalType "http://edamontology.org/data_1383" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
+            sc:name "Nucleic acid sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3028" ;
-            sc:name "Taxonomy" ;
-            sc:sameAs "http://edamontology.org/data_3028" ],
+            sc:additionalType "http://edamontology.org/data_3028" ;
+            sc:encodingFormat "http://edamontology.org/format_1910" ;
+            sc:name "Taxonomy" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3494" ;
-            sc:name "DNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3494" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "DNA sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3391 ;
     sc:author <https://orcid.org/0000-0003-2324-086X> ;
@@ -112104,7 +100103,7 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
     biotools:primaryContact <https://orcid.org/0000-0003-3663-0859> .
 
 <https://bio.tools/biomaster> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Bioinformatics portal" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0749,
@@ -112121,7 +100120,7 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
     sc:url "http://www.biomaster-uestc.cn" .
 
 <https://bio.tools/biome> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3174,
@@ -112137,7 +100136,7 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
     biotools:primaryContact "BioMe Support" .
 
 <https://bio.tools/biomedisa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3382,
         edam:topic_3405,
         edam:topic_3474,
@@ -112154,7 +100153,7 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
     sc:url "https://biomedisa.org" .
 
 <https://bio.tools/biomehorizon> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0637,
         edam:topic_3174,
@@ -112173,7 +100172,7 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
     sc:url "https://blekhmanlab.github.io/biomehorizon/" .
 
 <https://bio.tools/biomet_toolbox> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -112199,7 +100198,7 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
     biotools:primaryContact "Intawat Nookaew" .
 
 <https://bio.tools/biometall> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0166,
@@ -112218,7 +100217,7 @@ Mayo's Data for the bioCADDIE 2016 Dataset Retrieval Challenge""" ;
     sc:url "https://github.com/insilichem/biometall" .
 
 <https://bio.tools/biomex> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
         edam:topic_0769,
@@ -112239,7 +100238,7 @@ BIOMEX is a data analysis platform to facilitate the Biological Interpretation O
     sc:url "https://www.vibcancer.be/software-tools/biomex" .
 
 <https://bio.tools/biomformat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -112258,7 +100257,7 @@ BIOMEX is a data analysis platform to facilitate the Biological Interpretation O
     biotools:primaryContact "Paul J. McMurdie" .
 
 <https://bio.tools/biomoby> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0196,
@@ -112283,22 +100282,27 @@ BIOMEX is a data analysis platform to facilitate the Biological Interpretation O
 
 <https://bio.tools/biomodels> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0950" ;
-            sc:name "Mathematical model" ;
-            sc:sameAs "http://edamontology.org/data_0950" ] ;
+            sc:additionalType "http://edamontology.org/data_0950" ;
+            sc:encodingFormat "http://edamontology.org/format_2585" ;
+            sc:name "Mathematical model" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0950" ;
-            sc:name "Mathematical model" ;
-            sc:sameAs "http://edamontology.org/data_0950" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0950" ;
+            sc:encodingFormat "http://edamontology.org/format_2585" ;
+            sc:name "Mathematical model" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2259 ;
     sc:author "BioModels Team" ;
-    sc:citation <https://doi.org/10.1093/nar/gkv1352>,
+    sc:citation <https://doi.org/10.1093/nar/gkx1023>,
+        <https://doi.org/10.1093/nar/gkz1055>,
         <https://doi.org/10.1186/1752-0509-4-92>,
         "pmcid:PMC2909940",
-        "pubmed:20587024" ;
+        "pmcid:PMC5753244",
+        "pmcid:PMC7145643",
+        "pubmed:20587024",
+        "pubmed:29106614",
+        "pubmed:31701150" ;
     sc:description "Database of annotated published models is a data resource that allows biologists to store, search and retrieve published mathematical models of biological interests. Models present in this database are annotated and linked to relevant data resources, such as publications, databases of compounds and controlled vocabularies, and this modelling formats can be converted, with some of them being available online to be used directly." ;
     sc:featureList edam:operation_0226,
         edam:operation_0335,
@@ -112311,13 +100315,13 @@ BIOMEX is a data analysis platform to facilitate the Biological Interpretation O
         "Mac",
         "Windows" ;
     sc:provider "EMBL-EBI" ;
-    sc:softwareHelp <http://www.ebi.ac.uk/about/terms-of-use>,
-        <http://www.ebi.ac.uk/compneur-srv/sbml/converters/> ;
-    sc:url "http://www.ebi.ac.uk/biomodels" ;
-    biotools:primaryContact "Camille Laibe" .
+    sc:softwareHelp <https://www.ebi.ac.uk/about/terms-of-use>,
+        <https://www.ebi.ac.uk/biomodels/tools/converters/> ;
+    sc:url "https://www.ebi.ac.uk/biomodels" ;
+    biotools:primaryContact <https://orcid.org/0000-0003-0705-9809> .
 
 <https://bio.tools/biomodels-parameter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web API" ;
     sc:applicationSubCategory edam:topic_0602,
@@ -112339,14 +100343,14 @@ BIOMEX is a data analysis platform to facilitate the Biological Interpretation O
 
 <https://bio.tools/biomodels_database_converters> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0950" ;
-            sc:name "Mathematical model" ;
-            sc:sameAs "http://edamontology.org/data_0950" ] ;
+            sc:additionalType "http://edamontology.org/data_0950" ;
+            sc:encodingFormat "http://edamontology.org/format_2585" ;
+            sc:name "Mathematical model" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0950" ;
-            sc:name "Mathematical model" ;
-            sc:sameAs "http://edamontology.org/data_0950" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0950" ;
+            sc:encodingFormat "http://edamontology.org/format_2585" ;
+            sc:name "Mathematical model" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:author "BioModels Team" ;
@@ -112365,7 +100369,7 @@ BIOMEX is a data analysis platform to facilitate the Biological Interpretation O
     biotools:primaryContact "Camille Laibe" .
 
 <https://bio.tools/biomvcclass> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0607 ;
@@ -112384,18 +100388,18 @@ BIOMEX is a data analysis platform to facilitate the Biological Interpretation O
 
 <https://bio.tools/biomvrcns> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1276" ;
-            sc:name "Nucleic acid features" ;
-            sc:sameAs "http://edamontology.org/data_1276" ],
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_1920" ;
+            sc:name "Gene expression data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Gene expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ] ;
+            sc:additionalType "http://edamontology.org/data_1276" ;
+            sc:encodingFormat "http://edamontology.org/format_1920" ;
+            sc:name "Nucleic acid features" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1276" ;
-            sc:name "Nucleic acid features" ;
-            sc:sameAs "http://edamontology.org/data_1276" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1276" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Nucleic acid features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -112418,7 +100422,7 @@ BIOMEX is a data analysis platform to facilitate the Biological Interpretation O
     biotools:primaryContact "Yang Du" .
 
 <https://bio.tools/bion> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0154,
@@ -112432,7 +100436,7 @@ BIOMEX is a data analysis platform to facilitate the Biological Interpretation O
     biotools:primaryContact "Emil Alexov" .
 
 <https://bio.tools/bion-2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0166,
         edam:topic_0593,
@@ -112448,7 +100452,7 @@ BIOMEX is a data analysis platform to facilitate the Biological Interpretation O
     sc:url "http://compbio.clemson.edu/BION-2/" .
 
 <https://bio.tools/bionanoanalyst> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3168,
@@ -112468,34 +100472,34 @@ BIOMEX is a data analysis platform to facilitate the Biological Interpretation O
 
 <https://bio.tools/bionda> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2353" ;
-            sc:name "Ontology data" ;
-            sc:sameAs "http://edamontology.org/data_2353" ],
+            sc:additionalType "http://edamontology.org/data_2353" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Ontology data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2091" ;
-            sc:name "Accession" ;
-            sc:sameAs "http://edamontology.org/data_2091" ],
+            sc:additionalType "http://edamontology.org/data_0976" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Identifier (by type of data)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0976" ;
-            sc:name "Identifier (by type of data)" ;
-            sc:sameAs "http://edamontology.org/data_0976" ],
+            sc:additionalType "http://edamontology.org/data_2099" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Name" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2007" ;
-            sc:name "UniProt keyword" ;
-            sc:sameAs "http://edamontology.org/data_2007" ],
+            sc:additionalType "http://edamontology.org/data_2091" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Accession" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2099" ;
-            sc:name "Name" ;
-            sc:sameAs "http://edamontology.org/data_2099" ] ;
+            sc:additionalType "http://edamontology.org/data_2007" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "UniProt keyword" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2526" ;
-            sc:name "Text data" ;
-            sc:sameAs "http://edamontology.org/data_2526" ],
+            sc:additionalType "http://edamontology.org/data_2526" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Text data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2526" ;
-            sc:name "Text data" ;
-            sc:sameAs "http://edamontology.org/data_2526" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2526" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Text data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0078,
@@ -112524,7 +100528,7 @@ BIOMEX is a data analysis platform to facilitate the Biological Interpretation O
     biotools:primaryContact "bioinfoservice@rub.de" .
 
 <https://bio.tools/bioner> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0218,
         edam:topic_0602,
         edam:topic_3474 ;
@@ -112537,7 +100541,7 @@ BIOMEX is a data analysis platform to facilitate the Biological Interpretation O
     sc:url "https://github.com/JogleLew/bioner-cross-sharing" .
 
 <https://bio.tools/bionero> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -112556,7 +100560,7 @@ BIOMEX is a data analysis platform to facilitate the Biological Interpretation O
     sc:url "http://bioconductor.org/packages/BioNERO" .
 
 <https://bio.tools/bionet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0128,
@@ -112577,7 +100581,7 @@ BIOMEX is a data analysis platform to facilitate the Biological Interpretation O
     biotools:primaryContact "Marcus Dittrich" .
 
 <https://bio.tools/bionetcad> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2259,
@@ -112593,7 +100597,7 @@ BIOMEX is a data analysis platform to facilitate the Biological Interpretation O
     sc:url "https://www.sys2diag.cnrs.fr/index.php?page=bionetcad" .
 
 <https://bio.tools/bionetcomp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -112611,7 +100615,7 @@ BIOMEX is a data analysis platform to facilitate the Biological Interpretation O
     biotools:primaryContact <https://orcid.org/0000-0002-8766-0452> .
 
 <https://bio.tools/bionetfit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2259 ;
@@ -112626,7 +100630,7 @@ BIOMEX is a data analysis platform to facilitate the Biological Interpretation O
     biotools:primaryContact "Brandon Thomas" .
 
 <https://bio.tools/bionetgen> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2259,
@@ -112642,7 +100646,7 @@ BIOMEX is a data analysis platform to facilitate the Biological Interpretation O
     sc:url "http://bionetgen.org/" .
 
 <https://bio.tools/bionetstat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -112664,7 +100668,7 @@ BIOMEX is a data analysis platform to facilitate the Biological Interpretation O
     biotools:primaryContact "Vinicius Jardim" .
 
 <https://bio.tools/bionev> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0769,
@@ -112688,7 +100692,7 @@ This repository contains source code and datasets for paper "Graph Embedding on
     sc:url "https://github.com/xiangyue9607/BioNEV" .
 
 <https://bio.tools/bionimbus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_3365,
         edam:topic_3366,
@@ -112705,7 +100709,7 @@ This repository contains source code and datasets for paper "Graph Embedding on
         "General" .
 
 <https://bio.tools/bionj> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0654,
@@ -112723,7 +100727,7 @@ This repository contains source code and datasets for paper "Graph Embedding on
     biotools:primaryContact "Eric RIVALS" .
 
 <https://bio.tools/bionmf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_3070,
@@ -112743,14 +100747,13 @@ This repository contains source code and datasets for paper "Graph Embedding on
 
 <https://bio.tools/bionode> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2526" ;
-            sc:name "Text data" ;
-            sc:sameAs "http://edamontology.org/data_2526" ] ;
+            sc:additionalType "http://edamontology.org/data_2526" ;
+            sc:name "Text data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2526" ;
-            sc:name "Text data" ;
-            sc:sameAs "http://edamontology.org/data_2526" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2526" ;
+            sc:encodingFormat "http://edamontology.org/format_3464" ;
+            sc:name "Text data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library",
         "Web application",
@@ -112770,7 +100773,7 @@ This repository contains source code and datasets for paper "Graph Embedding on
     biotools:primaryContact "Bionode Team" .
 
 <https://bio.tools/bionode-bwa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0080 ;
@@ -112788,14 +100791,14 @@ This repository contains source code and datasets for paper "Graph Embedding on
 
 <https://bio.tools/bionode-fasta> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3464" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3071 ;
@@ -112815,14 +100818,12 @@ This repository contains source code and datasets for paper "Graph Embedding on
 
 <https://bio.tools/bionode-ncbi> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1056" ;
-            sc:name "Database name" ;
-            sc:sameAs "http://edamontology.org/data_1056" ] ;
+            sc:additionalType "http://edamontology.org/data_1056" ;
+            sc:name "Database name" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2080" ;
-            sc:name "Database search results" ;
-            sc:sameAs "http://edamontology.org/data_2080" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2080" ;
+            sc:name "Database search results" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0091,
@@ -112842,7 +100843,7 @@ This repository contains source code and datasets for paper "Graph Embedding on
     biotools:primaryContact "Bionode Team" .
 
 <https://bio.tools/bionode-sam> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0080 ;
@@ -112859,7 +100860,7 @@ This repository contains source code and datasets for paper "Graph Embedding on
     biotools:primaryContact "Bionode Team" .
 
 <https://bio.tools/bionode-sra> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:description "A Node.js wrapper for SRA Toolkit." ;
@@ -112873,7 +100874,7 @@ This repository contains source code and datasets for paper "Graph Embedding on
     biotools:primaryContact "Bruno Vieira" .
 
 <https://bio.tools/bionode-template> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0091 ;
     sc:description "Template module to use as base for quickly creating bionode modules." ;
@@ -112887,7 +100888,7 @@ This repository contains source code and datasets for paper "Graph Embedding on
     biotools:primaryContact "Bruno Vieira" .
 
 <https://bio.tools/bionoinet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0202,
@@ -112906,7 +100907,7 @@ This repository contains source code and datasets for paper "Graph Embedding on
     sc:url "https://github.com/CSBG-LSU/BionoiNet" .
 
 <https://bio.tools/bionsi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2275 ;
@@ -112926,7 +100927,7 @@ dynamics. It includes a visual representation of the network that enables resear
     sc:url "http://bionsi.wixsite.com/bionsi" .
 
 <https://bio.tools/biont> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0218,
@@ -112944,7 +100945,7 @@ dynamics. It includes a visual representation of the network that enables resear
     sc:url "https://github.com/lasigeBioTM/BiONT" .
 
 <https://bio.tools/bionumbers> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2229,
@@ -112965,7 +100966,7 @@ dynamics. It includes a visual representation of the network that enables resear
     biotools:primaryContact "Contact Form" .
 
 <https://bio.tools/bionumerics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0196,
@@ -112987,7 +100988,7 @@ dynamics. It includes a visual representation of the network that enables resear
     biotools:primaryContact "Support Form" .
 
 <https://bio.tools/biopan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0153,
         edam:topic_0602,
@@ -113004,7 +101005,7 @@ dynamics. It includes a visual representation of the network that enables resear
     biotools:primaryContact <https://orcid.org/0000-0002-6249-7767> .
 
 <https://bio.tools/bioparr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3300,
         edam:topic_3414,
@@ -113021,7 +101022,7 @@ dynamics. It includes a visual representation of the network that enables resear
     biotools:primaryContact "Grand Roman Joldes" .
 
 <https://bio.tools/bioparser> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0097,
@@ -113036,7 +101037,7 @@ dynamics. It includes a visual representation of the network that enables resear
     sc:url "http://www.dbbm.fiocruz.br/BioParser.html" .
 
 <https://bio.tools/bioparts_portal> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0780,
         edam:topic_3398,
@@ -113057,7 +101058,7 @@ Capturing, storing, and sharing biological DNA parts data are integral parts of
     sc:url "http://bioparts.org" .
 
 <https://bio.tools/biopartsbuilder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0196,
@@ -113074,7 +101075,7 @@ Capturing, storing, and sharing biological DNA parts data are integral parts of
     sc:url "https://github.com/baderzone/biopartsbuilder" .
 
 <https://bio.tools/biopartsdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3047,
@@ -113088,7 +101089,7 @@ Capturing, storing, and sharing biological DNA parts data are integral parts of
     sc:url "https://github.com/baderzone/biopartsdb" .
 
 <https://bio.tools/biopax-parser> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0634,
@@ -113106,7 +101107,7 @@ in a tabular format.""" ;
     sc:url "https://gitlab.com/giuseppeagapito/bip" .
 
 <https://bio.tools/biopax-pattern> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_2259 ;
@@ -113122,7 +101123,7 @@ in a tabular format.""" ;
     sc:url "https://code.google.com/p/biopax-pattern/" .
 
 <https://bio.tools/bioperl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3071,
@@ -113140,7 +101141,7 @@ in a tabular format.""" ;
     biotools:primaryContact "BioPerl team" .
 
 <https://bio.tools/biopetsurv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3303,
         edam:topic_3360,
@@ -113156,7 +101157,7 @@ in a tabular format.""" ;
     sc:url "http://www.prognosticenrichment.com/surv" .
 
 <https://bio.tools/biophi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2830,
@@ -113176,7 +101177,7 @@ in a tabular format.""" ;
     sc:url "https://biophi.dichlab.org/" .
 
 <https://bio.tools/biophp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3071,
@@ -113192,30 +101193,8 @@ in a tabular format.""" ;
     sc:url "http://biophp.org/" ;
     biotools:primaryContact "Contact form" .
 
-<https://bio.tools/biophysics> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0128,
-        edam:topic_0130,
-        edam:topic_0154,
-        edam:topic_0166,
-        edam:topic_3306 ;
-    sc:citation <https://doi.org/10.1021/ACS.JPROTEOME.9B00594>,
-        "pubmed:31795635" ;
-    sc:description """a Monomer-Based Approach to Predict Inter-Subunit Affinity of Protein Dimers.
-
-SEPAS performs the predictions using 3D structure of just one monomer.
-
-Executable version 1.0 for running in Linux x86_64.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'Complex Stability Encoded Binding Patch Softness', 'SEPAS', 'PBP'""" ;
-    sc:featureList edam:operation_0331,
-        edam:operation_0474,
-        edam:operation_2575,
-        edam:operation_3454 ;
-    sc:name "biophysics" ;
-    sc:url "http://biophysics.ir/affinity" .
-
 <https://bio.tools/biopieces> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0622 ;
     sc:description "Collection of bioinformatics tools that can be pieced together in a very easy and flexible manner to perform both simple and complex tasks. It works on a data stream in such a way that the data stream can be passed through several different tasks: modifying or adding records to the data stream, creating plots, or uploading data to databases and web services." ;
@@ -113233,7 +101212,7 @@ Executable version 1.0 for running in Linux x86_64.
     biotools:primaryContact "Martin Asser Hansen" .
 
 <https://bio.tools/biopig> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0654,
@@ -113249,7 +101228,7 @@ Executable version 1.0 for running in Linux x86_64.
     biotools:primaryContact "Zhong Wang" .
 
 <https://bio.tools/bioplat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2640,
@@ -113265,7 +101244,7 @@ Executable version 1.0 for running in Linux x86_64.
     sc:url "http://www.cancergenomics.net/" .
 
 <https://bio.tools/bioplib> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0166,
@@ -113282,7 +101261,7 @@ Executable version 1.0 for running in Linux x86_64.
     biotools:primaryContact "Dr. Andrew C.R. Martin" .
 
 <https://bio.tools/bioportal> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0102,
@@ -113302,7 +101281,7 @@ Executable version 1.0 for running in Linux x86_64.
     biotools:primaryContact "Contact form" .
 
 <https://bio.tools/biopp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_3372 ;
@@ -113311,7 +101290,7 @@ Executable version 1.0 for running in Linux x86_64.
     sc:url "http://biopp.univ-montp2.fr/wiki/index.php/Main_Page" .
 
 <https://bio.tools/biopredyn-bench> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0176,
         edam:topic_2259,
@@ -113327,7 +101306,7 @@ Executable version 1.0 for running in Linux x86_64.
     sc:url "https://sites.google.com/site/biopredynbenchmarks/" .
 
 <https://bio.tools/bioproject> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0621,
@@ -113348,7 +101327,7 @@ Executable version 1.0 for running in Linux x86_64.
     biotools:primaryContact "Ilene Karsch-Mizrachi" .
 
 <https://bio.tools/bioprospector> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0160,
@@ -113372,7 +101351,7 @@ Executable version 1.0 for running in Linux x86_64.
     biotools:primaryContact "Douglas L. Brutlag" .
 
 <https://bio.tools/bioptim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3300,
         edam:topic_3416,
@@ -113387,7 +101366,7 @@ Executable version 1.0 for running in Linux x86_64.
     biotools:primaryContact <https://orcid.org/0000-0002-5031-1048> .
 
 <https://bio.tools/biopyc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Suite" ;
     sc:applicationSubCategory edam:topic_0749,
@@ -113408,7 +101387,7 @@ Executable version 1.0 for running in Linux x86_64.
     sc:url "https://gitlab.inria.fr/biopyc/BioPyC/" .
 
 <https://bio.tools/biopyramid> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0622,
@@ -113425,7 +101404,7 @@ Executable version 1.0 for running in Linux x86_64.
     biotools:primaryContact "Jarny Choi" .
 
 <https://bio.tools/biopython> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_3071,
@@ -113448,7 +101427,7 @@ Executable version 1.0 for running in Linux x86_64.
     biotools:primaryContact "Biopython mailing list" .
 
 <https://bio.tools/bioqc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -113467,7 +101446,7 @@ Executable version 1.0 for running in Linux x86_64.
     biotools:primaryContact "Jitao David Zhang" .
 
 <https://bio.tools/bior> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0219,
         edam:topic_0622,
@@ -113483,7 +101462,7 @@ Executable version 1.0 for running in Linux x86_64.
     sc:url "http://bioinformaticstools.mayo.edu/research/bior/" .
 
 <https://bio.tools/bioreactor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2229,
         edam:topic_3300,
@@ -113494,8 +101473,53 @@ Executable version 1.0 for running in Linux x86_64.
     sc:name "bioreactor" ;
     sc:url "https://github.com/Szczesnytendon/Bioreactor" .
 
+<https://bio.tools/biored> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0089,
+        edam:topic_0218,
+        edam:topic_0634,
+        edam:topic_3063 ;
+    sc:citation <https://doi.org/10.1093/BIB/BBAC282>,
+        "pubmed:35849818" ;
+    sc:description "a biomedical relation extraction dataset (BioRED) with multiple entity types (e.g. gene/protein, disease, chemical) and relation pairs (e.g. gene-disease; chemical-chemical) at the document level, on a set of 600 PubMed abstracts." ;
+    sc:featureList edam:operation_3096,
+        edam:operation_3280,
+        edam:operation_3625,
+        edam:operation_3778 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "BioRED" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://ftp.ncbi.nlm.nih.gov/pub/lu/BioRED/" .
+
+<https://bio.tools/bioregistry> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_0842" ;
+            sc:encodingFormat "http://edamontology.org/format_1915" ;
+            sc:name "Identifier" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0089,
+        edam:topic_3345,
+        edam:topic_3366 ;
+    sc:citation <https://doi.org/10.1101/2022.07.08.499378> ;
+    sc:description "An open source, community curated registry, meta-registry, and compact identifier resolver" ;
+    sc:featureList edam:operation_0336 ;
+    sc:isAccessibleForFree true ;
+    sc:license "CC0-1.0" ;
+    sc:name "Bioregistry" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://bioregistry.readthedocs.io> ;
+    sc:url "https://bioregistry.io" ;
+    biotools:primaryContact <https://orcid.org/0000-0003-4423-4370> .
+
 <https://bio.tools/biorepository_portal_toolkit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3577,
@@ -113512,7 +101536,7 @@ Executable version 1.0 for running in Linux x86_64.
     sc:url "https://eig.research.chop.edu/brptoolkit/" .
 
 <https://bio.tools/biorssay> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2840,
         edam:topic_3300,
@@ -113531,7 +101555,7 @@ Executable version 1.0 for running in Linux x86_64.
     sc:url "https://github.com/milesilab/BioRssay" .
 
 <https://bio.tools/bioruby> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_3071,
@@ -113553,7 +101577,7 @@ Executable version 1.0 for running in Linux x86_64.
     biotools:primaryContact "Bioruby mailing list" .
 
 <https://bio.tools/bios2cor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -113574,19 +101598,21 @@ Executable version 1.0 for running in Linux x86_64.
 
 <https://bio.tools/biosamples> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3273" ;
-            sc:name "Sample ID" ;
-            sc:sameAs "http://edamontology.org/data_3273" ] ;
+            sc:additionalType "http://edamontology.org/data_3273" ;
+            sc:name "Sample ID" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3567" ;
-            sc:name "Reference sample report" ;
-            sc:sameAs "http://edamontology.org/data_3567" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3567" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Reference sample report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_3277 ;
-    sc:citation <https://doi.org/10.1093/nar/gkr937>,
+    sc:citation <https://doi.org/10.1093/NAR/GKAB1046>,
+        <https://doi.org/10.1093/nar/gkr937>,
         "pmcid:PMC3245134",
-        "pubmed:22096232" ;
+        "pmcid:PMC8728232",
+        "pubmed:22096232",
+        "pubmed:34747489" ;
     sc:description "This database stores information about biological samples used in molecular experiments, such as sequencing, gene expression or proteomics. It includes reference samples, such as cell lines, which are repeatedly used in experiments. Accession numbers for the reference samples will be exchanged with a similar database at NCBI, and DDBJ (Japan). Record access may be affected due to different release cycles and inter-institutional synchronisation." ;
     sc:featureList edam:operation_2422 ;
     sc:name "BioSamples" ;
@@ -113599,7 +101625,7 @@ Executable version 1.0 for running in Linux x86_64.
     biotools:primaryContact "Query email" .
 
 <https://bio.tools/biosans> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2259,
         edam:topic_3314,
@@ -113615,7 +101641,7 @@ Executable version 1.0 for running in Linux x86_64.
     sc:url "https://github.com/efajiculay/SysBioSoft/tree/main/BioSANS" .
 
 <https://bio.tools/biosaur> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -113629,41 +101655,14 @@ Executable version 1.0 for running in Linux x86_64.
     sc:url "https://github.com/abdrakhimov1/Biosaur" ;
     biotools:primaryContact <https://orcid.org/0000-0003-4762-2846> .
 
-<https://bio.tools/biosciences-labs> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0121,
-        edam:topic_0632,
-        edam:topic_3370,
-        edam:topic_3371,
-        edam:topic_3520 ;
-    sc:citation <https://doi.org/10.1021/ACS.JPCB.9B08506>,
-        "pubmed:31859508" ;
-    sc:description """Structural Analysis of 14-3-3-ζ Derived Phosphopeptides using Electron Capture Dissociation Mass Spectrometry, Travelling Wave Ion Mobility Spectrometry and Molecular Modelling.
-
-The Cooper Mass Spectrometry Group.
-
-Proteome Exchange dataset from the paper: Probing the Complementarity of FAIMS and Strong Cation Exchange Chromatography in Shotgun Proteomics, JASMS, 2013, page 431-443.
-
-Zipped mgf file from SCX-ETD analysis of synthetic phosphopeptides, Analytical Chemistry, 2013, page 4836-4843.
-
-Zipped mgf file from FAIMS-ETD analysis of synthetic phosphopeptides, Analytical Chemistry, 2013, page 4836-4843.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE '14-3-3-', 'biologically-derived', 'phosphopeptide', 'VVGARRSsWRVVSSI'""" ;
-    sc:featureList edam:operation_2929,
-        edam:operation_3755,
-        edam:operation_3767 ;
-    sc:name "biosciences-labs" ;
-    sc:url "http://www.biosciences-labs.bham.ac.uk/cooper/datasets.php" .
-
 <https://bio.tools/biosed> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -113694,7 +101693,7 @@ Zipped mgf file from FAIMS-ETD analysis of synthetic phosphopeptides, Analytical
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/biosed.html" .
 
 <https://bio.tools/biosemantics_suite> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:description "This service provides operations to (i) obtain synonyms for protein names from a number of sources (ii) provide uniprot identifiers for the input." ;
@@ -113705,7 +101704,7 @@ Zipped mgf file from FAIMS-ETD analysis of synthetic phosphopeptides, Analytical
     sc:url "http://biosemantics.org/index.php/software" .
 
 <https://bio.tools/bioseq-analysis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_3474,
         edam:topic_3512 ;
@@ -113719,7 +101718,7 @@ Zipped mgf file from FAIMS-ETD analysis of synthetic phosphopeptides, Analytical
     sc:url "http://bliulab.net/BioSeq-Analysis2.0/" .
 
 <https://bio.tools/bioseq-blm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0218,
@@ -113735,7 +101734,7 @@ Zipped mgf file from FAIMS-ETD analysis of synthetic phosphopeptides, Analytical
     sc:url "http://bliulab.net/BioSeq-BLM/" .
 
 <https://bio.tools/bioseqclass> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -113754,7 +101753,7 @@ Zipped mgf file from FAIMS-ETD analysis of synthetic phosphopeptides, Analytical
     biotools:primaryContact "Li Hong" .
 
 <https://bio.tools/biosequenceassembler> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3168 ;
@@ -113769,7 +101768,7 @@ Zipped mgf file from FAIMS-ETD analysis of synthetic phosphopeptides, Analytical
     sc:url "http://bio.codeplex.com/wikipage?title=sequenceassembler&referringTitle=sampleapps&ANCHOR#sampleapps" .
 
 <https://bio.tools/bioseqzip> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0622,
@@ -113787,7 +101786,7 @@ Zipped mgf file from FAIMS-ETD analysis of synthetic phosphopeptides, Analytical
     sc:url "https://github.com/bioinformatics-polito/BioSeqZip" .
 
 <https://bio.tools/bioservices> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070 ;
     sc:citation "pubmed:24064416" ;
@@ -113802,7 +101801,7 @@ Zipped mgf file from FAIMS-ETD analysis of synthetic phosphopeptides, Analytical
     sc:url "https://bioservices.readthedocs.io/" .
 
 <https://bio.tools/bioshell> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0081,
@@ -113819,7 +101818,7 @@ Zipped mgf file from FAIMS-ETD analysis of synthetic phosphopeptides, Analytical
     sc:url "https://bioshell.readthedocs.io" .
 
 <https://bio.tools/bioshell_threader> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0160,
@@ -113837,7 +101836,7 @@ Zipped mgf file from FAIMS-ETD analysis of synthetic phosphopeptides, Analytical
     sc:url "http://www.bioshell.pl/threader/" .
 
 <https://bio.tools/biosignal-toolbox> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_3304 ;
     sc:description "Small collection of functions that I developed for processing and analysis of biological signals." ;
@@ -113851,7 +101850,7 @@ Zipped mgf file from FAIMS-ETD analysis of synthetic phosphopeptides, Analytical
     biotools:primaryContact "Ikaro Silva" .
 
 <https://bio.tools/biosigner> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0622,
@@ -113872,14 +101871,14 @@ Zipped mgf file from FAIMS-ETD analysis of synthetic phosphopeptides, Analytical
 
 <https://bio.tools/biosimulations> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0950" ;
-            sc:name "Mathematical model" ;
-            sc:sameAs "http://edamontology.org/data_0950" ] ;
+            sc:additionalType "http://edamontology.org/data_0950" ;
+            sc:encodingFormat "http://edamontology.org/format_2585" ;
+            sc:name "Mathematical model" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3870" ;
-            sc:name "Trajectory data" ;
-            sc:sameAs "http://edamontology.org/data_3870" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3870" ;
+            sc:encodingFormat "http://edamontology.org/format_3604" ;
+            sc:name "Trajectory data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web API",
         "Web application",
@@ -113895,12 +101894,13 @@ Zipped mgf file from FAIMS-ETD analysis of synthetic phosphopeptides, Analytical
     sc:license "MIT" ;
     sc:name "BioSimulations" ;
     sc:softwareHelp <https://api.biosimulations.org/>,
-        <https://biosimulations.org/about/help>,
-        <https://github.com/reproducible-biomedical-modeling/Biosimulations/blob/dev/CODE_OF_CONDUCT.md> ;
+        <https://docs.biosimulations.org>,
+        <https://docs.biosimulations.org/about/terms/>,
+        <https://docs.biosimulations.org/developers/conduct/> ;
     sc:url "https://www.biosimulations.org/" .
 
 <https://bio.tools/biosimulators> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web API",
         "Web application" ;
@@ -113923,7 +101923,7 @@ Zipped mgf file from FAIMS-ETD analysis of synthetic phosphopeptides, Analytical
     sc:url "https://biosimulators.org" .
 
 <https://bio.tools/biosm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_2258,
@@ -113939,7 +101939,7 @@ Zipped mgf file from FAIMS-ETD analysis of synthetic phosphopeptides, Analytical
     sc:url "http://metabolomics.pharm.uconn.edu/?q=Software.html" .
 
 <https://bio.tools/biosmalltalk> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_3071,
@@ -113960,7 +101960,7 @@ Zipped mgf file from FAIMS-ETD analysis of synthetic phosphopeptides, Analytical
     sc:url "http://biosmalltalk.github.io/web/" .
 
 <https://bio.tools/biosmile> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0128,
@@ -113977,7 +101977,7 @@ Zipped mgf file from FAIMS-ETD analysis of synthetic phosphopeptides, Analytical
     biotools:primaryContact "BIOSMILE Team" .
 
 <https://bio.tools/biosmxpress> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3172,
         edam:topic_3292 ;
@@ -113993,7 +101993,7 @@ Zipped mgf file from FAIMS-ETD analysis of synthetic phosphopeptides, Analytical
     biotools:primaryContact "Mai Hamdalla" .
 
 <https://bio.tools/biosounds> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3050,
@@ -114009,14 +102009,14 @@ Zipped mgf file from FAIMS-ETD analysis of synthetic phosphopeptides, Analytical
 
 <https://bio.tools/biospean> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Mass spectrometry spectra" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Mass spectrometry data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3520 ;
     sc:author "Martin Raus" ;
@@ -114034,12 +102034,13 @@ Zipped mgf file from FAIMS-ETD analysis of synthetic phosphopeptides, Analytical
 
 <https://bio.tools/biospytial> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3707" ;
-            sc:name "Biodiversity data" ;
-            sc:sameAs "http://edamontology.org/data_3707" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3707" ;
+            sc:encodingFormat "http://edamontology.org/format_3591" ;
+            sc:name "Biodiversity data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0610,
+        edam:topic_3050,
         edam:topic_3307 ;
     sc:description "Biospytial is a modular open source knowledge engine designed to import, organise, analyse and visualise big spatial ecological datasets using the power of graph theory. It handles species occurrences and their taxonomic classification for performing ecological analysis on biodiversity and species distributions. The engine uses a hybrid graph-relational approach to store and access information. The data are linked with relationships that are stored in a graph database, while tabular and geospatial (vector and raster) data are stored in a relational database management system (RDBMS). The graph data structure provides a scalable design that eases the problem of merging datasets from different sources. The linkage relationships use semantic structures (objects and predicates) to answer scientific questions represented as complex data structures stored in the graph database." ;
     sc:featureList edam:operation_0224,
@@ -114057,30 +102058,30 @@ Zipped mgf file from FAIMS-ETD analysis of synthetic phosphopeptides, Analytical
 
 <https://bio.tools/biostrings> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3115" ;
-            sc:name "Microarray metadata" ;
-            sc:sameAs "http://edamontology.org/data_3115" ],
+            sc:additionalType "http://edamontology.org/data_3115" ;
+            sc:encodingFormat "http://edamontology.org/format_1919" ;
+            sc:name "Microarray metadata" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1919" ;
+            sc:name "Sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:encodingFormat "http://edamontology.org/format_1919" ;
+            sc:name "Sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3115" ;
-            sc:name "Microarray metadata" ;
-            sc:sameAs "http://edamontology.org/data_3115" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ],
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Sequence record" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3115" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Microarray metadata" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -114101,7 +102102,7 @@ Zipped mgf file from FAIMS-ETD analysis of synthetic phosphopeptides, Analytical
     biotools:primaryContact "H. Pagès" .
 
 <https://bio.tools/biostructurem> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_2814,
@@ -114120,7 +102121,7 @@ Zipped mgf file from FAIMS-ETD analysis of synthetic phosphopeptides, Analytical
     biotools:primaryContact "Yuan-Yu Chang" .
 
 <https://bio.tools/biostudies> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_3678 ;
     sc:citation <https://doi.org/10.1093/nar/gkx965> ;
@@ -114131,7 +102132,7 @@ Zipped mgf file from FAIMS-ETD analysis of synthetic phosphopeptides, Analytical
     biotools:primaryContact "Ugis Sarkans" .
 
 <https://bio.tools/biosunms> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0121 ;
     sc:citation <https://doi.org/10.1186/1472-6947-9-13> ;
@@ -114144,7 +102145,7 @@ Zipped mgf file from FAIMS-ETD analysis of synthetic phosphopeptides, Analytical
     sc:url "http://biosunms.sourceforge.net/" .
 
 <https://bio.tools/biosuper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_2814,
@@ -114164,7 +102165,7 @@ Zipped mgf file from FAIMS-ETD analysis of synthetic phosphopeptides, Analytical
     biotools:primaryContact "Ruben Abagyan" .
 
 <https://bio.tools/biosvd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -114186,7 +102187,7 @@ Zipped mgf file from FAIMS-ETD analysis of synthetic phosphopeptides, Analytical
         "Matthew Brauer" .
 
 <https://bio.tools/bioswitch-grn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0204,
@@ -114205,7 +102206,7 @@ Zipped mgf file from FAIMS-ETD analysis of synthetic phosphopeptides, Analytical
     sc:url "https://github.com/CBigOxf/BioSWITCH" .
 
 <https://bio.tools/biosyntax> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3053,
@@ -114224,7 +102225,7 @@ Zipped mgf file from FAIMS-ETD analysis of synthetic phosphopeptides, Analytical
     sc:url "https://biosyntax.org/" .
 
 <https://bio.tools/biosystems> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0602,
@@ -114246,8 +102247,30 @@ Zipped mgf file from FAIMS-ETD analysis of synthetic phosphopeptides, Analytical
     sc:url "http://www.ncbi.nlm.nih.gov/biosystems" ;
     biotools:primaryContact "Lewis Y. Geer" .
 
+<https://bio.tools/biotagme> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application",
+        "Workbench" ;
+    sc:applicationSubCategory edam:topic_0218,
+        edam:topic_0602,
+        edam:topic_3306,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.3389/FGENE.2022.855739>,
+        "pmcid:PMC9096447",
+        "pubmed:35571058" ;
+    sc:description "BioTAGME framework which combinesTAGME annotation framework based on Wikipedia corpus, with DT-Hybrid methodology." ;
+    sc:featureList edam:operation_0306,
+        edam:operation_3778,
+        edam:operation_3927 ;
+    sc:license "Proprietary" ;
+    sc:name "BioTAGME" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://biotagme.eu/" .
+
 <https://bio.tools/biotapestry> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0602,
@@ -114263,7 +102286,7 @@ Zipped mgf file from FAIMS-ETD analysis of synthetic phosphopeptides, Analytical
     sc:url "http://www.biotapestry.org/" .
 
 <https://bio.tools/biotext> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Library" ;
     sc:applicationSubCategory edam:topic_0091,
@@ -114281,7 +102304,7 @@ Zipped mgf file from FAIMS-ETD analysis of synthetic phosphopeptides, Analytical
     biotools:primaryContact <https://orcid.org/0000-0002-5271-991X> .
 
 <https://bio.tools/biotextquest> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3307 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btu524>,
@@ -114296,8 +102319,63 @@ Zipped mgf file from FAIMS-ETD analysis of synthetic phosphopeptides, Analytical
     sc:url "http://bioinformatics.med.uoc.gr/biotextquest" ;
     biotools:primaryContact "IOANNIS ILIOPOULOS" .
 
+<https://bio.tools/biotherapi> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:description """BioTherapi : Bioinformatics for Therapeutic Peptides and Proteins.
+This include all the relevant information about the use of Peptides/Proteins in drug and synthesis of new peptides. It also cover problems, in their formulation, synthesis and delivery process.""" ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "BioTherapi" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/biotherapi/index.html> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/biotherapi/index.html" .
+
+<https://bio.tools/biothings> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library",
+        "Suite",
+        "Workbench" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_0769,
+        edam:topic_3303 ;
+    sc:citation <https://doi.org/10.1093/bioinformatics/btac017> ;
+    sc:description "BioThings is a toolkit for building high-performance data APIs in biomedical research. BioThings SDK provides a Python-based toolkit to build high-performance data APIs (or web services) from a single data source or multiple data sources. It has the particular focus on building data APIs for biomedical-related entities, a.k.a \"BioThings\" (such as genes, genetic variants, drugs, chemicals, diseases, etc.).." ;
+    sc:featureList edam:operation_1812,
+        edam:operation_2422,
+        edam:operation_3436 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Apache-2.0" ;
+    sc:name "BioThings" ;
+    sc:softwareHelp <https://docs.biothings.io/en/latest/> ;
+    sc:url "https://biothings.io/" ;
+    biotools:primaryContact <https://orcid.org/0000-0002-2629-6124> .
+
+<https://bio.tools/biotip> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0625,
+        edam:topic_3170,
+        edam:topic_3360,
+        edam:topic_3452 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAC452>,
+        "pubmed:35640613" ;
+    sc:description "BioTIP: an R-package for Characterization of Biological Tipping Points." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_1781,
+        edam:operation_3463 ;
+    sc:license "Not licensed" ;
+    sc:name "BioTIP" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/xyang2uchicago/BioTIP" .
+
 <https://bio.tools/biotite> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -114315,7 +102393,7 @@ Zipped mgf file from FAIMS-ETD analysis of synthetic phosphopeptides, Analytical
     sc:url "https://www.biotite-python.org/" .
 
 <https://bio.tools/biotmle> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3168,
@@ -114336,7 +102414,7 @@ Zipped mgf file from FAIMS-ETD analysis of synthetic phosphopeptides, Analytical
     biotools:primaryContact "Nima Hejazi" .
 
 <https://bio.tools/biotracs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0593,
         edam:topic_0769,
@@ -114351,8 +102429,53 @@ Zipped mgf file from FAIMS-ETD analysis of synthetic phosphopeptides, Analytical
     sc:name "BioTracs" ;
     sc:url "https://bioaster.github.io/biotracs/" .
 
+<https://bio.tools/biotradis> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0769,
+        edam:topic_0798 ;
+    sc:citation <https://doi.org/10.1093/bioinformatics/btw022>,
+        "pmcid:PMC4896371",
+        "pubmed:26794317" ;
+    sc:description "The Bio::TraDIS pipeline provides software utilities for the processing, mapping, and analysis of transposon insertion sequencing data. The pipeline was designed with the data from the TraDIS sequencing protocol in mind, but should work with a variety of transposon insertion sequencing protocols as long as they produce data in the expected format." ;
+    sc:featureList edam:operation_2403 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "biotradis" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://sanger-pathogens.github.io/Bio-Tradis/> ;
+    sc:url "https://github.com/sanger-pathogens/Bio-Tradis" .
+
+<https://bio.tools/biotransformer> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Desktop application",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0152,
+        edam:topic_0154,
+        edam:topic_0593,
+        edam:topic_3172,
+        edam:topic_3407 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAC313>,
+        "pmcid:PMC9252798",
+        "pubmed:35536252" ;
+    sc:description "BioTransformer is a freely available web server that supports accurate, rapid and comprehensive in silico metabolism prediction." ;
+    sc:featureList edam:operation_0417,
+        edam:operation_3803,
+        edam:operation_3929 ;
+    sc:isAccessibleForFree true ;
+    sc:license "LGPL-3.0" ;
+    sc:name "BioTransformer" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareVersion "3.1.0" ;
+    sc:url "https://biotransformer.ca" .
+
 <https://bio.tools/biotranslator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0085,
         edam:topic_0602,
@@ -114384,7 +102507,7 @@ http://motherbox.chemeng.ntua.gr/anastasia_dev/""" ;
         "Olga Papadodima" .
 
 <https://bio.tools/biouml> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0219,
         edam:topic_2259,
@@ -114399,14 +102522,30 @@ http://motherbox.chemeng.ntua.gr/anastasia_dev/""" ;
     sc:softwareHelp <http://wiki.biouml.org/index.php/BioUML> ;
     sc:url "http://www.biouml.org/" .
 
+<https://bio.tools/biovae> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0218,
+        edam:topic_3344 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAB702>,
+        "pmcid:PMC8756089",
+        "pubmed:34636886" ;
+    sc:description "BioVAE is a pre-trained latent variable language model for biomedical text mining. Large scale pre-trained language models (PLMs) have advanced state-of-the-art (SOTA) performance on various biomedical text mining tasks. The power of such PLMs can be combined with the advantages of deep generative models. These are examples of these combinations. However, they are trained only on general domain text, and biomedical models are still missing. In this work, we describe BioVAE, the first large scale pre-trained latent variable language model for the biomedical domain, which uses the OPTIMUS framework to train on large volumes of biomedical text. The model shows SOTA performance on several biomedical text mining tasks when compared to existing publicly available biomedical PLMs." ;
+    sc:featureList edam:operation_0306 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Apache-2.0" ;
+    sc:name "BioVAE" ;
+    sc:url "https://github.com/aistairc/BioVAE" ;
+    biotools:primaryContact <https://orcid.org/0000-0002-2472-6370> .
+
 <https://bio.tools/biovalidator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "JSON payloads and ontologies become widely adopted in the life science community, validation of ontologies described in JSON documents becomes ever more important. ELIXIR biovalidator is a custom extension to existing JSON Schema syntax to include ontology validation and an implementation based on the Ajv javascript library" ;
     sc:name "biovalidator" ;
     sc:url "https://github.com/elixir-europe/biovalidator" .
 
 <https://bio.tools/biovenn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0092,
@@ -114425,7 +102564,7 @@ http://motherbox.chemeng.ntua.gr/anastasia_dev/""" ;
     biotools:primaryContact "Tim Hulsen" .
 
 <https://bio.tools/bioverse> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0602 ;
@@ -114439,8 +102578,29 @@ http://motherbox.chemeng.ntua.gr/anastasia_dev/""" ;
     sc:name "Bioverse" ;
     sc:url "http://bioverse.compbio.washington.edu/" .
 
+<https://bio.tools/biovisreport> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0749,
+        edam:topic_2640,
+        edam:topic_3372 ;
+    sc:citation <https://doi.org/10.1016/J.CSBJ.2022.06.009>,
+        "pmcid:PMC9233186",
+        "pubmed:35782729" ;
+    sc:description "A Markdown-based lightweight website builder for reproducible and interactive visualization of results from peer-reviewed publications." ;
+    sc:featureList edam:operation_0337 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "BioVisReport" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://biovis.report/docs/faqs/>,
+        <https://biovis.report/docs/getting-started/> ;
+    sc:url "https://biovis.report/" .
+
 <https://bio.tools/bioviz-connect> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0632,
         edam:topic_0780,
@@ -114457,7 +102617,7 @@ http://motherbox.chemeng.ntua.gr/anastasia_dev/""" ;
     sc:url "https://bioviz.org" .
 
 <https://bio.tools/biovizbase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0622,
@@ -114477,7 +102637,7 @@ http://motherbox.chemeng.ntua.gr/anastasia_dev/""" ;
     biotools:primaryContact "Michael Lawrence" .
 
 <https://bio.tools/biovlab-cancer-pharmacogenomics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0208,
         edam:topic_2640,
@@ -114498,7 +102658,7 @@ http://motherbox.chemeng.ntua.gr/anastasia_dev/""" ;
     sc:url "http://biohealth.snu.ac.kr/software/biovlab_cancer_pharmacogenomics" .
 
 <https://bio.tools/biovnn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0602,
@@ -114515,7 +102675,7 @@ http://motherbox.chemeng.ntua.gr/anastasia_dev/""" ;
     sc:url "https://github.com/LichtargeLab/BioVNN" .
 
 <https://bio.tools/bioword> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0097,
@@ -114533,10 +102693,10 @@ http://motherbox.chemeng.ntua.gr/anastasia_dev/""" ;
 
 <https://bio.tools/bip> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1964" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3298 ;
@@ -114556,7 +102716,7 @@ http://motherbox.chemeng.ntua.gr/anastasia_dev/""" ;
     sc:url "https://bip.earlham.ac.uk/" .
 
 <https://bio.tools/bip_finder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0092 ;
     sc:description "Search engine for popular or influential open access papers in Life Sciences that supports visualization of publication analytics." ;
@@ -114570,22 +102730,20 @@ http://motherbox.chemeng.ntua.gr/anastasia_dev/""" ;
 
 <https://bio.tools/bipa> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1127" ;
-            sc:name "PDB ID" ;
-            sc:sameAs "http://edamontology.org/data_1127" ],
+            sc:additionalType "http://edamontology.org/data_1127" ;
+            sc:name "PDB ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1042" ;
-            sc:name "SCOP sunid" ;
-            sc:sameAs "http://edamontology.org/data_1042" ] ;
+            sc:additionalType "http://edamontology.org/data_1042" ;
+            sc:name "SCOP sunid" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0906" ;
-            sc:name "Protein interaction data" ;
-            sc:sameAs "http://edamontology.org/data_0906" ],
+            sc:additionalType "http://edamontology.org/data_0906" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Protein interaction data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0906" ;
-            sc:name "Protein interaction data" ;
-            sc:sameAs "http://edamontology.org/data_0906" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0906" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Protein interaction data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0128 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btp243> ;
@@ -114597,7 +102755,7 @@ http://motherbox.chemeng.ntua.gr/anastasia_dev/""" ;
     biotools:primaryContact "Semin Lee" .
 
 <https://bio.tools/bipad> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654 ;
@@ -114612,7 +102770,7 @@ http://motherbox.chemeng.ntua.gr/anastasia_dev/""" ;
     sc:url "http://bipad.cmh.edu/" .
 
 <https://bio.tools/bipom> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Ontology" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0821,
@@ -114632,14 +102790,13 @@ http://motherbox.chemeng.ntua.gr/anastasia_dev/""" ;
 
 <https://bio.tools/bips> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2974" ;
-            sc:name "Protein sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_2974" ] ;
+            sc:additionalType "http://edamontology.org/data_2974" ;
+            sc:encodingFormat "http://edamontology.org/format_1218" ;
+            sc:name "Protein sequence (raw)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:name "Pathway or network" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API" ;
     sc:applicationSubCategory edam:topic_2259 ;
     sc:author <http://orcid.org/0000-0001-9539-2606> ;
@@ -114657,8 +102814,31 @@ http://motherbox.chemeng.ntua.gr/anastasia_dev/""" ;
     sc:softwareVersion "1" ;
     sc:url "http://sbi.imim.es/BIPS.php" .
 
+<https://bio.tools/bipspi> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0128,
+        edam:topic_0196,
+        edam:topic_2275,
+        edam:topic_3474,
+        edam:topic_3534 ;
+    sc:citation <https://doi.org/10.1016/J.JMB.2022.167556>,
+        "pubmed:35662471" ;
+    sc:description "BIPSPI (xgBoost Interface Prediction of Specific Partner Interactions) is a partner specific binding site predictor that employs the XGBoost algorithm" ;
+    sc:featureList edam:operation_2492,
+        edam:operation_2575,
+        edam:operation_3350,
+        edam:operation_3899 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Apache-2.0" ;
+    sc:name "BIPSPI+" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://bipspi.cnb.csic.es" .
+
 <https://bio.tools/biq_analyzer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_3173,
@@ -114679,7 +102859,7 @@ http://motherbox.chemeng.ntua.gr/anastasia_dev/""" ;
     biotools:primaryContact "BiQ Analyzer team" .
 
 <https://bio.tools/biq_analyzer_himod> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0654,
@@ -114702,7 +102882,7 @@ http://motherbox.chemeng.ntua.gr/anastasia_dev/""" ;
         "Web-site problems" .
 
 <https://bio.tools/biq_analyzer_ht> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_3168,
@@ -114722,7 +102902,7 @@ http://motherbox.chemeng.ntua.gr/anastasia_dev/""" ;
     biotools:primaryContact "Pavlo Lutsik" .
 
 <https://bio.tools/birds> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_3304,
         edam:topic_3382,
@@ -114739,7 +102919,7 @@ http://motherbox.chemeng.ntua.gr/anastasia_dev/""" ;
     sc:url "https://github.com/bleach1by1/BIRDS_plugin" .
 
 <https://bio.tools/birewire> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0602 ;
@@ -114758,8 +102938,28 @@ http://motherbox.chemeng.ntua.gr/anastasia_dev/""" ;
     sc:url "http://bioconductor.org/packages/release/bioc/html/BiRewire.html" ;
     biotools:primaryContact "Andrea Gobbi" .
 
+<https://bio.tools/birgrn> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Desktop application" ;
+    sc:applicationSubCategory edam:topic_0602,
+        edam:topic_3170,
+        edam:topic_3308,
+        edam:topic_3315,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.3389/FONC.2022.899825>,
+        "pmcid:PMC9178250",
+        "pubmed:35692809" ;
+    sc:description "A computational method BiRGRN to infer GRNs from time-series scRNA-seq data." ;
+    sc:featureList edam:operation_1781,
+        edam:operation_3625,
+        edam:operation_3659 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Other" ;
+    sc:name "BiRGRN" ;
+    sc:url "https://gitee.com/DHUDBLab/bi-rgrn" .
+
 <https://bio.tools/birta> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0099,
@@ -114780,18 +102980,18 @@ http://motherbox.chemeng.ntua.gr/anastasia_dev/""" ;
 
 <https://bio.tools/birte> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ],
+            sc:additionalType "http://edamontology.org/data_1234" ;
+            sc:encodingFormat "http://edamontology.org/format_1919" ;
+            sc:name "Sequence set (nucleic acid)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1234" ;
-            sc:name "Sequence set (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1234" ] ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:encodingFormat "http://edamontology.org/format_1919" ;
+            sc:name "Pathway or network" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:encodingFormat "http://edamontology.org/format_2013" ;
+            sc:name "Pathway or network" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0602,
@@ -114811,7 +103011,7 @@ http://motherbox.chemeng.ntua.gr/anastasia_dev/""" ;
     biotools:primaryContact "Holger Froehlich" .
 
 <https://bio.tools/bis-snp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3168,
@@ -114830,7 +103030,7 @@ http://motherbox.chemeng.ntua.gr/anastasia_dev/""" ;
     biotools:primaryContact "Benjamin P Berman" .
 
 <https://bio.tools/bis2analyzer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0130,
         edam:topic_0623 ;
@@ -114847,7 +103047,7 @@ http://motherbox.chemeng.ntua.gr/anastasia_dev/""" ;
         "Francesco Oteri" .
 
 <https://bio.tools/bisa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3125 ;
@@ -114862,7 +103062,7 @@ http://motherbox.chemeng.ntua.gr/anastasia_dev/""" ;
     sc:url "http://bisa.sourceforge.net/" .
 
 <https://bio.tools/bisbee> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3170,
@@ -114883,7 +103083,7 @@ http://motherbox.chemeng.ntua.gr/anastasia_dev/""" ;
     sc:url "https://github.com/tgen/bisbee" .
 
 <https://bio.tools/bisc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0128,
@@ -114904,8 +103104,26 @@ http://motherbox.chemeng.ntua.gr/anastasia_dev/""" ;
     sc:url "https://bisc.soe.ucsc.edu/" ;
     biotools:primaryContact "Dietlind L. Gerloff" .
 
+<https://bio.tools/biscap> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Desktop application" ;
+    sc:applicationSubCategory edam:topic_0091,
+        edam:topic_3068,
+        edam:topic_3452 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC002>,
+        "pubmed:34986264" ;
+    sc:description "BISCAP (Biofilm Imaging and Structure Classification Automatic Processor) a high-fidelity strategy for the automatic processing of 2D OCT biofilm." ;
+    sc:featureList edam:operation_3443 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "BISCAP" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/diogonarciso/BISCAP" .
+
 <https://bio.tools/biscap_and_cfdr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_2269,
@@ -114920,7 +103138,7 @@ http://motherbox.chemeng.ntua.gr/anastasia_dev/""" ;
     sc:url "http://cfdr.sourceforge.net/" .
 
 <https://bio.tools/biscot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
@@ -114940,7 +103158,7 @@ http://motherbox.chemeng.ntua.gr/anastasia_dev/""" ;
     sc:url "https://github.com/institut-de-genomique/biscot" .
 
 <https://bio.tools/bisen> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2259,
         edam:topic_3292 ;
@@ -114955,7 +103173,7 @@ http://motherbox.chemeng.ntua.gr/anastasia_dev/""" ;
     sc:url "http://virtualrat.org/software/bisen/" .
 
 <https://bio.tools/biseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3168,
@@ -114974,7 +103192,7 @@ http://motherbox.chemeng.ntua.gr/anastasia_dev/""" ;
     biotools:primaryContact "Katja Hebestreit" .
 
 <https://bio.tools/bisg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0659,
         edam:topic_2640,
@@ -114991,7 +103209,7 @@ http://motherbox.chemeng.ntua.gr/anastasia_dev/""" ;
     sc:url "https://github.com/LingtaoSu/BISG" .
 
 <https://bio.tools/bismark> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3173,
@@ -115011,7 +103229,7 @@ http://motherbox.chemeng.ntua.gr/anastasia_dev/""" ;
     biotools:primaryContact "Simon Andrews" .
 
 <https://bio.tools/bison> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3168,
         edam:topic_3295 ;
@@ -115028,7 +103246,7 @@ http://motherbox.chemeng.ntua.gr/anastasia_dev/""" ;
     biotools:primaryContact "Devon Patrick Ryan" .
 
 <https://bio.tools/bisque> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0219,
         edam:topic_3512 ;
@@ -115041,7 +103259,7 @@ http://motherbox.chemeng.ntua.gr/anastasia_dev/""" ;
     sc:url "http://bisque.yulab.org/" .
 
 <https://bio.tools/bissap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:description "BiSSAP is a computer program designed to facilitate the creation of sequence listings for patent applications containing biological sequences (see Rule 30 EPC, Rule 5.2 PCT, and the Decision of the President and Notice from the EPO dated 28 April 2011 (OJ EPO 6/2011, 372 ff.))." ;
@@ -115056,7 +103274,7 @@ http://motherbox.chemeng.ntua.gr/anastasia_dev/""" ;
     sc:url "http://www.epo.org/applying/online-services/online-filing/auxiliary/bissap.html" .
 
 <https://bio.tools/bisulfighter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3168,
@@ -115070,7 +103288,7 @@ http://motherbox.chemeng.ntua.gr/anastasia_dev/""" ;
     sc:url "http://epigenome.cbrc.jp/bisulfighter" .
 
 <https://bio.tools/bit-table-biclustering-closed-itemset-mining-high-dimensional-binary-data> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:description "Bit-Table Based Biclustering and Frequent Closed Itemset Mining in High-Dimensional Binary Data. Method to find both frequent closed itemsets and biclusters in high-dimensional binary data." ;
     sc:isAccessibleForFree true ;
@@ -115083,7 +103301,7 @@ http://motherbox.chemeng.ntua.gr/anastasia_dev/""" ;
     biotools:primaryContact "Janos Abonyi" .
 
 <https://bio.tools/bitenet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Script" ;
     sc:applicationSubCategory edam:topic_0736,
@@ -115102,8 +103320,28 @@ http://motherbox.chemeng.ntua.gr/anastasia_dev/""" ;
     sc:name "BiteNet" ;
     sc:url "https://github.com/i-Molecule/bitenet" .
 
+<https://bio.tools/bites> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_2269,
+        edam:topic_2640,
+        edam:topic_3421,
+        edam:topic_3474,
+        edam:topic_3577 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC221>,
+        "pmcid:PMC9235492",
+        "pubmed:35758796" ;
+    sc:description "BITES: Balanced Individual Treatment Effect for Survival data is a package for counterfactual survival analysis with the aim to predict the individual treatment effect of patients based on right-censored data." ;
+    sc:featureList edam:operation_2422,
+        edam:operation_3435,
+        edam:operation_3503 ;
+    sc:isAccessibleForFree true ;
+    sc:license "BSD-2-Clause" ;
+    sc:name "BITES" ;
+    sc:url "https://github.com/sschrod/BITES" .
+
 <https://bio.tools/bitmapper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3053,
@@ -115120,14 +103358,13 @@ http://motherbox.chemeng.ntua.gr/anastasia_dev/""" ;
 
 <https://bio.tools/bitmapperbs> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3494" ;
-            sc:name "DNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3494" ] ;
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:name "DNA sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1916" ;
-            sc:name "Alignment" ;
-            sc:sameAs "http://edamontology.org/data_1916" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1916" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:citation <https://doi.org/10.1101/442798v1.full> ;
     sc:description "BitMapperBS is an ultra-fast and memory-efficient aligner that is designed for WGBS reads from directional protocol." ;
     sc:featureList edam:operation_3186 ;
@@ -115135,7 +103372,7 @@ http://motherbox.chemeng.ntua.gr/anastasia_dev/""" ;
     sc:url "https://github.com/chhylp123/BitMapperBS" .
 
 <https://bio.tools/bitpai> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0102 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btu507>,
@@ -115152,7 +103389,7 @@ http://motherbox.chemeng.ntua.gr/anastasia_dev/""" ;
     biotools:primaryContact "Joshua Loving" .
 
 <https://bio.tools/bitqt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0176,
         edam:topic_0203,
@@ -115169,20 +103406,60 @@ http://motherbox.chemeng.ntua.gr/anastasia_dev/""" ;
     sc:softwareHelp <https://bitqt.readthedocs.io/en/latest/> ;
     sc:url "https://github.com/LQCT/BitQT.git" .
 
+<https://bio.tools/bitr-unet> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_3384,
+        edam:topic_3444,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1007/978-3-031-09002-8_1>,
+        "pmcid:PMC9396958",
+        "pubmed:36005929" ;
+    sc:description "A CNN-Transformer combined model, called BiTr-Unet, with specific modifications for brain tumor segmentation on multi-modal MRI scans" ;
+    sc:featureList edam:operation_2422,
+        edam:operation_2428,
+        edam:operation_3435 ;
+    sc:license "Apache-2.0" ;
+    sc:name "BiTr-Unet" ;
+    sc:url "https://github.com/JustaTinyDot/BiTr-Unet" .
+
+<https://bio.tools/bitsc2> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workbench" ;
+    sc:applicationSubCategory edam:topic_0084,
+        edam:topic_0625,
+        edam:topic_2640,
+        edam:topic_3676,
+        edam:topic_3974 ;
+    sc:citation <https://doi.org/10.1093/BIB/BBAC092>,
+        "pmcid:PMC9116244",
+        "pubmed:35368055" ;
+    sc:description "Bayesian inference of Tumor clonal Tree by joint analysis of Single-Cell SNV and CNA data" ;
+    sc:featureList edam:operation_0323,
+        edam:operation_2238,
+        edam:operation_3196 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "BiTSC2" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/ucasdp/BiTSC2" .
+
 <https://bio.tools/bitseq> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
+            sc:name "Sequence alignment" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ],
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Plot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -115204,7 +103481,7 @@ http://motherbox.chemeng.ntua.gr/anastasia_dev/""" ;
         "Panagiotis Papastamoulis" .
 
 <https://bio.tools/bitterpredict> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_2815,
         edam:topic_3292,
@@ -115221,7 +103498,7 @@ http://motherbox.chemeng.ntua.gr/anastasia_dev/""" ;
     biotools:primaryContact "Support" .
 
 <https://bio.tools/bivartect> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0199,
@@ -115238,29 +103515,29 @@ http://motherbox.chemeng.ntua.gr/anastasia_dev/""" ;
     sc:name "Bivartect" ;
     sc:url "https://github.com/ykat0/bivartect" .
 
-<https://bio.tools/bkbxxmrhfh> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3361,
-        edam:topic_3379,
-        edam:topic_3421,
-        edam:topic_3571 ;
-    sc:citation <https://doi.org/10.1016/J.DIB.2019.104536>,
-        "pmcid:PMC6811965",
-        "pubmed:31667297" ;
-    sc:description """Survey data on the quality of life of consumers fitted with osseointegrated fixation and bone-anchored limb prostheses provided by government organization.
-
-Survey on the quality of life of consumers fitted with osseointegrated fixation and bone-anchored limb prostheses provided by government organization.
-
-This specifically-designed survey data on the quality of life was administered by Queensland Artificial Limb Services (QALS) as an integrated part of its continuous quality improvement procedure for assessing the provision of bone-anchored prosthesis.
-
-Published: 19 Jul 2019 : Version 1 : DOI: 10.17632/bkbxxmrhfh.1.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'QALS', 'bone-anchored prosthesis', 'bone-anchored', 'prosthesis'""" ;
-    sc:featureList edam:operation_3435 ;
-    sc:name "bkbxxmrhfh" ;
-    sc:url "https://data.mendeley.com/datasets/bkbxxmrhfh/1" .
+<https://bio.tools/bivrec> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0634,
+        edam:topic_2269,
+        edam:topic_2815 ;
+    sc:citation <https://doi.org/10.1186/S12874-022-01558-0>,
+        "pmcid:PMC8978432",
+        "pubmed:35369863" ;
+    sc:description "An R package for the nonparametric and semiparametric analysis of bivariate alternating recurrent events." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3435,
+        edam:operation_3659 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "BivRec" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://cran.r-project.org/package=BivRec" .
 
 <https://bio.tools/bktree> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0602,
@@ -115275,7 +103552,7 @@ Published: 19 Jul 2019 : Version 1 : DOI: 10.17632/bkbxxmrhfh.1.
     biotools:primaryContact "Liming Cai" .
 
 <https://bio.tools/blacasurv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3305,
@@ -115291,14 +103568,13 @@ Published: 19 Jul 2019 : Version 1 : DOI: 10.17632/bkbxxmrhfh.1.
 
 <https://bio.tools/blackfan_anemia> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1026" ;
-            sc:name "Gene symbol" ;
-            sc:sameAs "http://edamontology.org/data_1026" ] ;
+            sc:additionalType "http://edamontology.org/data_1026" ;
+            sc:name "Gene symbol" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0916" ;
-            sc:name "Gene report" ;
-            sc:sameAs "http://edamontology.org/data_0916" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0916" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Gene report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0634 ;
     sc:citation <https://doi.org/10.1002/humu.21383>,
@@ -115315,7 +103591,7 @@ Published: 19 Jul 2019 : Version 1 : DOI: 10.17632/bkbxxmrhfh.1.
     sc:url "http://www.dbagenes.unito.it" .
 
 <https://bio.tools/blamm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_3316,
@@ -115332,7 +103608,7 @@ Published: 19 Jul 2019 : Version 1 : DOI: 10.17632/bkbxxmrhfh.1.
     sc:url "https://github.com/biointec/blamm" .
 
 <https://bio.tools/bland-altman-plot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269 ;
     sc:description "Generates bland Altman plot" ;
@@ -115347,7 +103623,7 @@ Published: 19 Jul 2019 : Version 1 : DOI: 10.17632/bkbxxmrhfh.1.
     biotools:primaryContact "Barry Greene" .
 
 <https://bio.tools/blannotator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0121,
@@ -115369,8 +103645,31 @@ Published: 19 Jul 2019 : Version 1 : DOI: 10.17632/bkbxxmrhfh.1.
     sc:url "http://ekhidna.biocenter.helsinki.fi/poxo/blannotator" ;
     biotools:primaryContact "BLANNOTATOR Webmaster" .
 
+<https://bio.tools/blantyreesbl> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0084,
+        edam:topic_2830,
+        edam:topic_3305,
+        edam:topic_3575,
+        edam:topic_3673 ;
+    sc:citation <https://doi.org/10.1101/2021.10.07.463515>,
+        <https://doi.org/10.1101/2021.10.07.463523> ;
+    sc:description "The blantyreESBL R package is a repository for data generated as part of a study into carriage of resistant bacteria in Blantyre, Malawi" ;
+    sc:featureList edam:operation_0323,
+        edam:operation_0337,
+        edam:operation_3431,
+        edam:operation_3840 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Other" ;
+    sc:name "blantyreESBL" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://doi.org/10.5281/zenodo.5554082" .
+
 <https://bio.tools/blasr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0622,
@@ -115386,30 +103685,29 @@ Published: 19 Jul 2019 : Version 1 : DOI: 10.17632/bkbxxmrhfh.1.
 
 <https://bio.tools/blast> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ],
-        [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0857" ;
-            sc:name "Sequence search results" ;
-            sc:sameAs "http://edamontology.org/data_0857" ],
-        [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0857" ;
-            sc:name "Sequence search results" ;
-            sc:sameAs "http://edamontology.org/data_0857" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0857" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Sequence search results" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web API",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
-        edam:topic_0622 ;
+        edam:topic_0091 ;
     sc:citation <https://doi.org/10.1016/S0022-2836(05)80360-2>,
         <https://doi.org/10.1093/bioinformatics/btw305>,
+        <https://doi.org/10.1093/nar/gkn201>,
+        <https://doi.org/10.1093/nar/gkt282>,
+        "pmcid:PMC2447716",
+        "pmcid:PMC3692093",
         "pmcid:PMC5013910",
+        "pubmed:18440982",
+        "pubmed:2231712",
+        "pubmed:23609542",
         "pubmed:27256311" ;
     sc:description "A tool that finds regions of similarity between biological sequences. The program compares nucleotide or protein sequences to sequence databases and calculates the statistical significance." ;
     sc:featureList edam:operation_0292,
@@ -115419,12 +103717,13 @@ Published: 19 Jul 2019 : Version 1 : DOI: 10.17632/bkbxxmrhfh.1.
     sc:operatingSystem "Linux",
         "Mac",
         "Windows" ;
-    sc:softwareHelp <https://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&PAGE_TYPE=BlastDocs> ;
+    sc:softwareHelp <https://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&PAGE_TYPE=BlastDocs>,
+        <https://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&PAGE_TYPE=BlastDocs&DOC_TYPE=References> ;
     sc:url "https://blast.ncbi.nlm.nih.gov/Blast.cgi" ;
     biotools:primaryContact "BLAST Support" .
 
 <https://bio.tools/blast-filter-tool> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0080 ;
@@ -115446,7 +103745,7 @@ Published: 19 Jul 2019 : Version 1 : DOI: 10.17632/bkbxxmrhfh.1.
     biotools:primaryContact "Patrick Durand" .
 
 <https://bio.tools/blast-qc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0769,
@@ -115463,7 +103762,7 @@ Published: 19 Jul 2019 : Version 1 : DOI: 10.17632/bkbxxmrhfh.1.
     sc:url "https://github.com/torkian/blast-QC" .
 
 <https://bio.tools/blast2fish> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0621,
@@ -115484,18 +103783,20 @@ Published: 19 Jul 2019 : Version 1 : DOI: 10.17632/bkbxxmrhfh.1.
 
 <https://bio.tools/blast2go> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1383" ;
-            sc:name "Sequence alignment (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1383" ] ;
+            sc:additionalType "http://edamontology.org/data_1383" ;
+            sc:name "Sequence alignment (nucleic acid)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3753" ;
-            sc:name "Over-representation data" ;
-            sc:sameAs "http://edamontology.org/data_3753" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3753" ;
+            sc:name "Over-representation data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_3511 ;
-    sc:citation <https://doi.org/10.1093/bioinformatics/bti610> ;
+    sc:citation <https://doi.org/10.1093/bioinformatics/bti610>,
+        <https://doi.org/10.1093/nar/gkn176>,
+        "pmcid:PMC2425479",
+        "pubmed:16081474",
+        "pubmed:18445632" ;
     sc:description "Bioinformatics platform for high-quality functional annotation and analysis of genomic datasets. It allows analyzing and visualizing newly sequenced genomes by combining state-of-the-art methodologies, standard resources and algorithms. It allows to gain biological insights fast and easy even for completely novel genomes. Perform out-of-the-box the entire workflow of functional annotation of your transcriptomic datasets including its analysis and biological interpretation." ;
     sc:featureList edam:operation_3672 ;
     sc:name "Blast2GO" ;
@@ -115507,18 +103808,15 @@ Published: 19 Jul 2019 : Version 1 : DOI: 10.17632/bkbxxmrhfh.1.
 
 <https://bio.tools/blast2srs> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0968" ;
-            sc:name "Keyword" ;
-            sc:sameAs "http://edamontology.org/data_0968" ],
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:name "Sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_0968" ;
+            sc:name "Keyword" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0857" ;
-            sc:name "Sequence search results" ;
-            sc:sameAs "http://edamontology.org/data_0857" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0857" ;
+            sc:name "Sequence search results" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -115532,14 +103830,12 @@ Published: 19 Jul 2019 : Version 1 : DOI: 10.17632/bkbxxmrhfh.1.
 
 <https://bio.tools/blast_api_ebi> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0857" ;
-            sc:name "Sequence search results" ;
-            sc:sameAs "http://edamontology.org/data_0857" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0857" ;
+            sc:name "Sequence search results" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1016/S0022-2836(05)80360-2> ;
@@ -115556,14 +103852,14 @@ Published: 19 Jul 2019 : Version 1 : DOI: 10.17632/bkbxxmrhfh.1.
 
 <https://bio.tools/blast_best_score> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0857" ;
-            sc:name "Sequence search results" ;
-            sc:sameAs "http://edamontology.org/data_0857" ] ;
+            sc:additionalType "http://edamontology.org/data_0857" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Sequence search results" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0078,
@@ -115584,14 +103880,12 @@ Published: 19 Jul 2019 : Version 1 : DOI: 10.17632/bkbxxmrhfh.1.
 
 <https://bio.tools/blast_betacoronavirus> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0857" ;
-            sc:name "Sequence search results" ;
-            sc:sameAs "http://edamontology.org/data_0857" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0857" ;
+            sc:name "Sequence search results" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0781,
@@ -115604,21 +103898,20 @@ Published: 19 Jul 2019 : Version 1 : DOI: 10.17632/bkbxxmrhfh.1.
 
 <https://bio.tools/blast_ebi> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0857" ;
-            sc:name "Sequence search results" ;
-            sc:sameAs "http://edamontology.org/data_0857" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0857" ;
+            sc:name "Sequence search results" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API",
         "Web application",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0622 ;
-    sc:author "Web Production" ;
+    sc:author "Job Dispatcher" ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btw305>,
+        <https://doi.org/10.1093/nar/gkac240>,
         <https://doi.org/10.1186/1471-2105-10-421>,
         "pmcid:PMC2803857",
         "pmcid:PMC5013910",
@@ -115637,18 +103930,16 @@ Published: 19 Jul 2019 : Version 1 : DOI: 10.17632/bkbxxmrhfh.1.
         <http://www.ebi.ac.uk/about/terms-of-use>,
         <https://www.ebi.ac.uk/seqdb/confluence/pages/viewpage.action?pageId=68167377> ;
     sc:url "http://www.ebi.ac.uk/Tools/sss/ncbiblast/" ;
-    biotools:primaryContact "Web Production" .
+    biotools:primaryContact "Job Dispatcher Team" .
 
 <https://bio.tools/blast_sib> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0857" ;
-            sc:name "Sequence search results" ;
-            sc:sameAs "http://edamontology.org/data_0857" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0857" ;
+            sc:name "Sequence search results" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -115665,7 +103956,7 @@ Published: 19 Jul 2019 : Version 1 : DOI: 10.17632/bkbxxmrhfh.1.
     biotools:primaryContact "ExPASy helpdesk" .
 
 <https://bio.tools/blast_viewer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0092,
@@ -115688,7 +103979,7 @@ Published: 19 Jul 2019 : Version 1 : DOI: 10.17632/bkbxxmrhfh.1.
     sc:url "https://github.com/pgdurand/BlastViewer" .
 
 <https://bio.tools/blastalign> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/bth459> ;
@@ -115703,7 +103994,7 @@ Published: 19 Jul 2019 : Version 1 : DOI: 10.17632/bkbxxmrhfh.1.
     sc:url "http://evolve.zoo.ox.ac.uk/Evolve/Blastalign.html" .
 
 <https://bio.tools/blastfrost> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0622,
@@ -115721,7 +104012,7 @@ Published: 19 Jul 2019 : Version 1 : DOI: 10.17632/bkbxxmrhfh.1.
     sc:url "https://github.com/nluhmann/BlastFrost" .
 
 <https://bio.tools/blastgraph> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3316 ;
@@ -115734,7 +104025,7 @@ Published: 19 Jul 2019 : Version 1 : DOI: 10.17632/bkbxxmrhfh.1.
     sc:url "https://github.com/GuillaumeHolley/BlastGraph" .
 
 <https://bio.tools/blastgui> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0081,
@@ -115751,7 +104042,7 @@ Users can build databases and perform sequence filtering and sequence alignment
     sc:url "https://github.com/byemaxx/BlastGUI" .
 
 <https://bio.tools/blastkoala> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3174 ;
@@ -115767,7 +104058,7 @@ Users can build databases and perform sequence filtering and sequence alignment
     biotools:primaryContact "Minoru Kanehisa" .
 
 <https://bio.tools/blasto> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation "pubmed:17483516" ;
@@ -115779,14 +104070,12 @@ Users can build databases and perform sequence filtering and sequence alignment
 
 <https://bio.tools/blastprodom> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0857" ;
-            sc:name "Sequence search results" ;
-            sc:sameAs "http://edamontology.org/data_0857" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0857" ;
+            sc:name "Sequence search results" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btg111> ;
@@ -115799,7 +104088,7 @@ Users can build databases and perform sequence filtering and sequence alignment
     sc:url "http://prodom.prabi.fr/prodom/current/documentation/blastProDom.html" .
 
 <https://bio.tools/blastr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0659,
@@ -115813,8 +104102,22 @@ Users can build databases and perform sequence filtering and sequence alignment
     sc:softwareVersion "2.2" ;
     sc:url "http://www.tcoffee.org/Projects/blastr/" .
 
+<https://bio.tools/blastxml_to_gapped_gff3> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3068 ;
+    sc:description "Convert BlastXML results into GFF3 format." ;
+    sc:featureList edam:operation_3434 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "blastxml to gapped gff3" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://usegalaxy.org.au/root?tool_id=toolshed.g2.bx.psu.edu/repos/iuc/blastxml_to_gapped_gff3/blastxml_to_gapped_gff3/1.1" .
+
 <https://bio.tools/blat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation "pubmed:11932250" ;
@@ -115831,7 +104134,7 @@ Users can build databases and perform sequence filtering and sequence alignment
         "Website and data questions" .
 
 <https://bio.tools/bless> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3168 ;
@@ -115845,7 +104148,7 @@ Users can build databases and perform sequence filtering and sequence alignment
     biotools:primaryContact "Anand Ramachandran" .
 
 <https://bio.tools/bleties> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0157,
         edam:topic_0196,
@@ -115862,8 +104165,29 @@ Users can build databases and perform sequence filtering and sequence alignment
     sc:url "https://github.com/Swart-lab/bleties" ;
     biotools:primaryContact <https://orcid.org/0000-0002-1878-4363> .
 
+<https://bio.tools/bletl> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0625,
+        edam:topic_0769,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1002/ELSC.202100108>,
+        "pmcid:PMC8961055",
+        "pubmed:35382539" ;
+    sc:description "A Python package for integrating BioLector microcultivation devices in the Design-Build-Test-Learn cycle." ;
+    sc:featureList edam:operation_1812,
+        edam:operation_3799,
+        edam:operation_3937 ;
+    sc:isAccessibleForFree true ;
+    sc:license "AGPL-3.0" ;
+    sc:name "bletl" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/JuBiotech/bletl" .
+
 <https://bio.tools/blight> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3168,
         edam:topic_3174,
@@ -115881,7 +104205,7 @@ Users can build databases and perform sequence filtering and sequence alignment
         <https://orcid.org/0000-0002-7235-7346> .
 
 <https://bio.tools/blima> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3518 ;
@@ -115899,7 +104223,7 @@ Users can build databases and perform sequence filtering and sequence alignment
     biotools:primaryContact "Vojtech Kulvait" .
 
 <https://bio.tools/blimp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0199 ;
@@ -115915,7 +104239,7 @@ Users can build databases and perform sequence filtering and sequence alignment
     biotools:primaryContact <https://orcid.org/0000-0001-8990-2737> .
 
 <https://bio.tools/blind_docking_server> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:citation <https://doi.org/10.1038/s41589-019-0278-6> ;
     sc:description """Server for performing blind docking calculations. Unique approach where user only inputs ligand and protein, and where the whole protein surface area is processed in order to find potential ligand interaction spots. Main application case can be found at:
 
@@ -115925,7 +104249,7 @@ https://www.nature.com/articles/s41589-019-0278-6""" ;
     sc:url "https://bio-hpc.ucam.edu/achilles" .
 
 <https://bio.tools/blixem> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3293 ;
@@ -115940,7 +104264,7 @@ https://www.nature.com/articles/s41589-019-0278-6""" ;
     biotools:primaryContact "Erik Sonnhammer" .
 
 <https://bio.tools/blma> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Suite" ;
     sc:applicationSubCategory edam:topic_1775,
@@ -115961,7 +104285,7 @@ https://www.nature.com/articles/s41589-019-0278-6""" ;
     biotools:primaryContact "Tin Nguyen" .
 
 <https://bio.tools/blobdetection-bloodflow-estimation> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3318,
@@ -115981,7 +104305,7 @@ https://www.nature.com/articles/s41589-019-0278-6""" ;
     biotools:primaryContact "Julie" .
 
 <https://bio.tools/blobtools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0622,
@@ -115998,16 +104322,34 @@ https://www.nature.com/articles/s41589-019-0278-6""" ;
     sc:operatingSystem "Linux" ;
     sc:url "https://github.com/DRL/blobtools" .
 
+<https://bio.tools/block_aligner> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0080,
+        edam:topic_3518,
+        edam:topic_3520 ;
+    sc:citation <https://doi.org/10.1101/2021.11.08.467651> ;
+    sc:description "SIMD-accelerated library for computing global and X-drop affine gap penalty sequence-to-sequence or sequence-to-profile alignments using an adaptive block-based algorithm." ;
+    sc:featureList edam:operation_0300,
+        edam:operation_0491,
+        edam:operation_0496 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "block aligner" ;
+    sc:operatingSystem "Linux",
+        "Mac" ;
+    sc:url "https://github.com/Daniel-Liu-c0deb0t/block-aligner" .
+
 <https://bio.tools/blockbuster> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2012" ;
-            sc:name "Sequence coordinates" ;
-            sc:sameAs "http://edamontology.org/data_2012" ] ;
+            sc:additionalType "http://edamontology.org/data_2012" ;
+            sc:encodingFormat "http://edamontology.org/format_3003" ;
+            sc:name "Sequence coordinates" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2012" ;
-            sc:name "Sequence coordinates" ;
-            sc:sameAs "http://edamontology.org/data_2012" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2012" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Sequence coordinates" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btp419>,
@@ -116019,7 +104361,7 @@ https://www.nature.com/articles/s41589-019-0278-6""" ;
     sc:url "http://hoffmann.bioinf.uni-leipzig.de/LIFE/blockbuster.html" .
 
 <https://bio.tools/blocklogo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0160,
@@ -116035,8 +104377,29 @@ https://www.nature.com/articles/s41589-019-0278-6""" ;
     sc:url "http://research4.dfci.harvard.edu/cvc/blocklogo/index.php" ;
     biotools:primaryContact "Lars Rønn Olsen" .
 
+<https://bio.tools/blockpolish> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workflow" ;
+    sc:applicationSubCategory edam:topic_0196,
+        edam:topic_3474,
+        edam:topic_3673 ;
+    sc:citation <https://doi.org/10.1093/BIB/BBAB405>,
+        "pubmed:34619757" ;
+    sc:description "Tool for accurate polishing of long-read assembly via block divide-and-conquer" ;
+    sc:featureList edam:operation_0310,
+        edam:operation_0491,
+        edam:operation_0492,
+        edam:operation_3195 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "BlockPolish" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/huangnengCSU/BlockPolish" .
+
 <https://bio.tools/blocks_www_server> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -116058,7 +104421,7 @@ https://www.nature.com/articles/s41589-019-0278-6""" ;
     biotools:primaryContact "Contact form" .
 
 <https://bio.tools/blomaps> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0097 ;
@@ -116071,7 +104434,7 @@ https://www.nature.com/articles/s41589-019-0278-6""" ;
     sc:url "https://code.google.com/p/backbone-advance/" .
 
 <https://bio.tools/blood-cells-tracking-measurement> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3344,
@@ -116087,7 +104450,7 @@ https://www.nature.com/articles/s41589-019-0278-6""" ;
     biotools:primaryContact "Chen yuan" .
 
 <https://bio.tools/blood-exposome-db> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0218,
         edam:topic_2840,
@@ -116103,7 +104466,7 @@ https://www.nature.com/articles/s41589-019-0278-6""" ;
     sc:url "http://bloodexposome.org" .
 
 <https://bio.tools/blood-glucose-model-insulin-control> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -116119,7 +104482,7 @@ https://www.nature.com/articles/s41589-019-0278-6""" ;
     biotools:primaryContact "John Hedengren" .
 
 <https://bio.tools/blood-glucose-regulation-type-i-diabetic-simulink> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:description "Control blood sugar levels by adjusting insulin injection pump rate" ;
     sc:isAccessibleForFree true ;
@@ -116132,7 +104495,7 @@ https://www.nature.com/articles/s41589-019-0278-6""" ;
     biotools:primaryContact "John Hedengren" .
 
 <https://bio.tools/blood-vessel-segmentation-retinal-images> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3315,
@@ -116151,7 +104514,7 @@ https://www.nature.com/articles/s41589-019-0278-6""" ;
     biotools:primaryContact "Ashkan Abbasi" .
 
 <https://bio.tools/bloodgen3> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0804,
@@ -116174,7 +104537,7 @@ https://www.nature.com/articles/s41589-019-0278-6""" ;
     sc:url "https://github.com/Drinchai/BloodGen3Module" .
 
 <https://bio.tools/bloodgen3module> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0634,
@@ -116193,7 +104556,7 @@ https://www.nature.com/articles/s41589-019-0278-6""" ;
     sc:url "https://github.com/Drinchai/BloodGen3Module" .
 
 <https://bio.tools/bloodvessels-tracking-diameter-estimation> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3070,
@@ -116212,18 +104575,15 @@ https://www.nature.com/articles/s41589-019-0278-6""" ;
 
 <https://bio.tools/blossoc> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2012" ;
-            sc:name "Sequence coordinates" ;
-            sc:sameAs "http://edamontology.org/data_2012" ],
+            sc:additionalType "http://edamontology.org/data_2012" ;
+            sc:name "Sequence coordinates" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1863" ;
-            sc:name "Haplotype map" ;
-            sc:sameAs "http://edamontology.org/data_1863" ] ;
+            sc:additionalType "http://edamontology.org/data_1863" ;
+            sc:name "Haplotype map" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:name "Image" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102 ;
     sc:citation <https://doi.org/10.1186/1471-2105-7-454>,
@@ -116240,7 +104600,7 @@ https://www.nature.com/articles/s41589-019-0278-6""" ;
     biotools:primaryContact "Thomas Mailund" .
 
 <https://bio.tools/bloutminer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654,
@@ -116257,7 +104617,7 @@ https://www.nature.com/articles/s41589-019-0278-6""" ;
     sc:url "http://microbiology.se/software/" .
 
 <https://bio.tools/blox> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0593,
         edam:topic_3047,
@@ -116275,14 +104635,12 @@ https://www.nature.com/articles/s41589-019-0278-6""" ;
 
 <https://bio.tools/blsspeller> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3148" ;
-            sc:name "Gene family report" ;
-            sc:sameAs "http://edamontology.org/data_3148" ] ;
+            sc:additionalType "http://edamontology.org/data_3148" ;
+            sc:name "Gene family report" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1353" ;
-            sc:name "Sequence motif" ;
-            sc:sameAs "http://edamontology.org/data_1353" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1353" ;
+            sc:name "Sequence motif" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0797 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btv466> ;
@@ -116297,7 +104655,7 @@ https://www.nature.com/articles/s41589-019-0278-6""" ;
     sc:url "http://bioinformatics.intec.ugent.be/blsspeller/index.html" .
 
 <https://bio.tools/blue> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0654,
@@ -116312,7 +104670,7 @@ https://www.nature.com/articles/s41589-019-0278-6""" ;
     sc:url "http://www.bioinformatics.csiro.au/blue/" .
 
 <https://bio.tools/blupadc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0780,
@@ -116332,7 +104690,7 @@ https://www.nature.com/articles/s41589-019-0278-6""" ;
     sc:url "https://github.com/TXiang-lab/blupADC" .
 
 <https://bio.tools/blupf90> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3056 ;
     sc:citation <https://doi.org/10.1016/j.livsci.2014.04.029>,
@@ -116348,7 +104706,7 @@ https://www.nature.com/articles/s41589-019-0278-6""" ;
     sc:url "http://nce.ads.uga.edu/html/projects/programs/" .
 
 <https://bio.tools/blur> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0128,
         edam:topic_0160,
@@ -116364,7 +104722,7 @@ https://www.nature.com/articles/s41589-019-0278-6""" ;
     sc:url "http://lbgi.fr/blur/" .
 
 <https://bio.tools/bluues> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3332 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/bts343> ;
@@ -116381,7 +104739,7 @@ https://www.nature.com/articles/s41589-019-0278-6""" ;
     biotools:primaryContact "Silvio C.E. Tosatto" .
 
 <https://bio.tools/blvector> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0154,
@@ -116398,7 +104756,7 @@ https://www.nature.com/articles/s41589-019-0278-6""" ;
     sc:url "https://github.com/galvezuma/BLVector" .
 
 <https://bio.tools/bm-bc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3168 ;
@@ -116414,7 +104772,7 @@ https://www.nature.com/articles/s41589-019-0278-6""" ;
     sc:url "http://health.bsd.uchicago.edu/yji/soft.html" .
 
 <https://bio.tools/bm-de> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0203,
@@ -116431,7 +104789,7 @@ https://www.nature.com/articles/s41589-019-0278-6""" ;
     biotools:primaryContact "Juhee Lee" .
 
 <https://bio.tools/bmap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0654,
@@ -116444,8 +104802,32 @@ https://www.nature.com/articles/s41589-019-0278-6""" ;
     sc:softwareHelp <http://bioputer.mimuw.edu.pl/papers/bmap/bmapsup.pdf> ;
     sc:url "http://bioputer.mimuw.edu.pl/papers/bmap/" .
 
+<https://bio.tools/bmc_caller> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0160,
+        edam:topic_0821,
+        edam:topic_2229,
+        edam:topic_3293,
+        edam:topic_3944 ;
+    sc:citation <https://doi.org/10.1186/S13062-022-00323-Z>,
+        "pmcid:PMC9052549",
+        "pubmed:35484563" ;
+    sc:description "A webtool to identify and analyze bacterial microcompartment types in sequence data." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_0477,
+        edam:operation_3929 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "BMC Caller" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://bmc-caller.prl.msu.edu" .
+
 <https://bio.tools/bmcm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269 ;
     sc:description "Probability results are informed plus recall, precision, F factor, G factor, correlation and kappa." ;
@@ -116460,7 +104842,7 @@ https://www.nature.com/articles/s41589-019-0278-6""" ;
     biotools:primaryContact "David Powers" .
 
 <https://bio.tools/bmdx> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0625,
@@ -116475,7 +104857,7 @@ https://www.nature.com/articles/s41589-019-0278-6""" ;
     sc:url "https://github.com/Greco-Lab/BMDx/" .
 
 <https://bio.tools/bmf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0128,
@@ -116492,18 +104874,18 @@ https://www.nature.com/articles/s41589-019-0278-6""" ;
 
 <https://bio.tools/bmge> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1998" ;
+            sc:name "Sequence alignment" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1973" ;
+            sc:name "Sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0084 ;
     sc:author "Alexis Criscuolo" ;
@@ -116527,7 +104909,7 @@ https://www.nature.com/articles/s41589-019-0278-6""" ;
     biotools:primaryContact "Alexis Criscuolo" .
 
 <https://bio.tools/bmipt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0078 ;
     sc:description "B-MIPT is a tool using Image Processing and Genetic Algorithm to study the rate of expression of both the proteins in the placenta." ;
@@ -116540,7 +104922,7 @@ https://www.nature.com/articles/s41589-019-0278-6""" ;
     sc:url "http://www.juit.ac.in/attachments/Bmipt/Home%20Page.htm" .
 
 <https://bio.tools/bml> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0160,
@@ -116558,7 +104940,7 @@ https://www.nature.com/articles/s41589-019-0278-6""" ;
     sc:url "http://motif.t-ridership.com/" .
 
 <https://bio.tools/bmltux> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in",
         "Suite" ;
     sc:applicationSubCategory edam:topic_3361,
@@ -116573,7 +104955,7 @@ https://www.nature.com/articles/s41589-019-0278-6""" ;
     sc:url "https://biomotionlab.github.io/TUX/" .
 
 <https://bio.tools/bmodeltest> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3293,
@@ -116593,7 +104975,7 @@ https://www.nature.com/articles/s41589-019-0278-6""" ;
     biotools:primaryContact "Remco R. Bouckaert" .
 
 <https://bio.tools/bmrb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0593,
@@ -116613,7 +104995,7 @@ https://www.nature.com/articles/s41589-019-0278-6""" ;
     sc:url "http://www.bmrb.wisc.edu" .
 
 <https://bio.tools/bmrf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0203,
@@ -116628,7 +105010,7 @@ https://www.nature.com/articles/s41589-019-0278-6""" ;
     sc:url "http://www.cbil.ece.vt.edu/software.htm" .
 
 <https://bio.tools/bms_standards_registry> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API",
         "Web application" ;
     sc:applicationSubCategory edam:topic_3071 ;
@@ -116645,7 +105027,7 @@ https://www.nature.com/articles/s41589-019-0278-6""" ;
     biotools:primaryContact "M.A.Swertz" .
 
 <https://bio.tools/bmss2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Library" ;
     sc:applicationSubCategory edam:topic_0769,
@@ -116660,7 +105042,7 @@ https://www.nature.com/articles/s41589-019-0278-6""" ;
     sc:url "https://github.com/EngBioNUS/BMSS2" .
 
 <https://bio.tools/bmt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0632,
@@ -116681,7 +105063,7 @@ https://www.nature.com/articles/s41589-019-0278-6""" ;
     sc:url "https://github.com/nasiriqbal012/BMT_SETUP" .
 
 <https://bio.tools/bmtk> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3304,
@@ -116698,7 +105080,7 @@ https://www.nature.com/articles/s41589-019-0278-6""" ;
     sc:url "https://alleninstitute.github.io/bmtk/" .
 
 <https://bio.tools/bna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0602,
@@ -116713,7 +105095,7 @@ https://www.nature.com/articles/s41589-019-0278-6""" ;
     sc:url "http://www.bioinformatics.org/bna/wiki/" .
 
 <https://bio.tools/bnbc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0199 ;
     sc:citation <https://doi.org/10.1101/214361> ;
@@ -116730,7 +105112,7 @@ https://www.nature.com/articles/s41589-019-0278-6""" ;
     biotools:primaryContact "Kipper Fletez-Brant" .
 
 <https://bio.tools/bnbr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2269,
@@ -116750,7 +105132,7 @@ https://www.nature.com/articles/s41589-019-0278-6""" ;
         "Xiaoning Qian" .
 
 <https://bio.tools/bnd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2269,
@@ -116765,7 +105147,7 @@ https://www.nature.com/articles/s41589-019-0278-6""" ;
     sc:url "http://www.csbio.sjtu.edu.cn/bioinf/BND/" .
 
 <https://bio.tools/bnpc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0199,
@@ -116780,8 +105162,18 @@ https://www.nature.com/articles/s41589-019-0278-6""" ;
     sc:name "BnpC" ;
     sc:url "https://github.com/cbg-ethz/BnpC" .
 
+<https://bio.tools/bnreduction> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:citation <https://doi.org/10.1186/1471-2105-15-221> ;
+    sc:description "Steady-state analysis of Boolean molecular network models via model reduction and computational algebra" ;
+    sc:isAccessibleForFree true ;
+    sc:license "Freeware" ;
+    sc:name "BNReduction" ;
+    sc:softwareHelp <https://github.com/alanavc/BNReduction> ;
+    sc:url "https://github.com/alanavc/BNReduction" .
+
 <https://bio.tools/bns_framework> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_2815,
@@ -116802,7 +105194,7 @@ https://www.nature.com/articles/s41589-019-0278-6""" ;
     sc:url "https://github.com/midiacom/BNS-Framework" .
 
 <https://bio.tools/boag> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0154,
         edam:topic_0194,
@@ -116817,7 +105209,7 @@ https://www.nature.com/articles/s41589-019-0278-6""" ;
     sc:url "http://boa.cs.iastate.edu/boag" .
 
 <https://bio.tools/boardion> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3168,
         edam:topic_3382 ;
@@ -116827,7 +105219,7 @@ https://www.nature.com/articles/s41589-019-0278-6""" ;
     sc:url "http://www.genoscope.cns.fr/boardion/" .
 
 <https://bio.tools/boassembler> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0203,
@@ -116843,7 +105235,7 @@ https://www.nature.com/articles/s41589-019-0278-6""" ;
     sc:url "https://github.com/shunfumao/boassembler" .
 
 <https://bio.tools/bober> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0209,
@@ -116863,7 +105255,7 @@ https://www.nature.com/articles/s41589-019-0278-6""" ;
     biotools:primaryContact "Dušanka Janežič" .
 
 <https://bio.tools/bobro> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -116879,7 +105271,7 @@ https://www.nature.com/articles/s41589-019-0278-6""" ;
     biotools:primaryContact "Qin Ma, Ph.D" .
 
 <https://bio.tools/boctopus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0820,
@@ -116896,7 +105288,7 @@ https://www.nature.com/articles/s41589-019-0278-6""" ;
     biotools:primaryContact "Arne Elofsson" .
 
 <https://bio.tools/bodil> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0166,
@@ -116912,8 +105304,28 @@ https://www.nature.com/articles/s41589-019-0278-6""" ;
     sc:softwareHelp <http://users.abo.fi/bodil/about.php> ;
     sc:url "http://users.abo.fi/bodil/about.php" .
 
+<https://bio.tools/bodymapr> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0092,
+        edam:topic_2640,
+        edam:topic_3063,
+        edam:topic_3382 ;
+    sc:citation <https://doi.org/10.1093/JAMIAOPEN/OOAC013>,
+        "pmcid:PMC8903180",
+        "pubmed:35274087" ;
+    sc:description "R package and Shiny application designed to generate anatomical visualizations of cancer lesions." ;
+    sc:featureList edam:operation_0337 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "BodyMapR" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/TheMillerLab/BodyMapR" .
+
 <https://bio.tools/boiler> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_3071,
@@ -116932,8 +105344,55 @@ https://www.nature.com/articles/s41589-019-0278-6""" ;
     sc:url "https://github.com/jpritt/boiler" ;
     biotools:primaryContact "Langmead B" .
 
+<https://bio.tools/boin> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library",
+        "Suite",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_2269,
+        edam:topic_2640,
+        edam:topic_3379 ;
+    sc:citation <https://doi.org/10.1093/NOP/NPAB035>,
+        <https://doi.org/10.1200/CCI.20.00122>,
+        <https://doi.org/10.18637/jss.v094.i13>,
+        "pmcid:PMC8462603",
+        "pmcid:PMC8579094",
+        "pubmed:33439726",
+        "pubmed:34777832" ;
+    sc:description "The Bayesian optimal interval (BOIN) design is a novel phase I clinical trial design for finding the maximum tolerated dose (MTD). It can be used to design both single-agent and drug-combination trials." ;
+    sc:featureList edam:operation_0479,
+        edam:operation_3454,
+        edam:operation_4009 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-2.0" ;
+    sc:name "BOIN" ;
+    sc:operatingSystem "Mac",
+        "Windows" ;
+    sc:url "https://www.trialdesign.org/" .
+
+<https://bio.tools/bollito> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workflow" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0769,
+        edam:topic_3170 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAB758>,
+        "pubmed:34788788" ;
+    sc:description "Bollito is a Snakemake pipeline that performs a comprehensive single-cell RNA-seq analysis, covering both the basic steps (QC, alignment, quantification and cell specific QC) and more advanced downstream analyses (clustering, diferential expresion, trajectory inference, functional analysis and RNA velocity)." ;
+    sc:featureList edam:operation_0244,
+        edam:operation_3223,
+        edam:operation_3680 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "bollito" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://gitlab.com/bu_cnio/bollito/-/tree/master/tutorials> ;
+    sc:url "https://gitlab.com/bu_cnio/bollito" .
+
 <https://bio.tools/bolotie> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_3127,
@@ -116953,7 +105412,7 @@ https://www.nature.com/articles/s41589-019-0278-6""" ;
     sc:url "https://github.com/salzberg-lab/bolotie" .
 
 <https://bio.tools/boltzmatch> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -116971,23 +105430,40 @@ Authors: Anastasia Voronkova, Pavel Sulimov, and Attila Kertesz-Farkas National
     sc:url "https://github.com/kfattila/BoltzMatch" .
 
 <https://bio.tools/bomiprot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
-    sc:applicationSubCategory edam:topic_0080,
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0078,
+        edam:topic_0080,
         edam:topic_0121,
+        edam:topic_0152,
+        edam:topic_0153,
         edam:topic_0601,
         edam:topic_0749,
         edam:topic_3390 ;
     sc:citation <https://doi.org/10.1016/J.JPROT.2020.103648>,
-        "pubmed:31958638" ;
-    sc:description "BoMiProt is a manually curated, comprehensive repository of published information of bovine milk proteins. It provides a bird’s eye view of the on-going research on bovine milk and possible information gaps that needs attention for maximizing health promoting effects of milk and different dairy products. It is a focused effort to consolidate the existing information of different milk proteins with focus on functions, biochemical properties, post translational modifications and significance of the protein in milk." ;
-    sc:featureList edam:operation_0477,
+        <https://doi.org/10.1016/J.JPROT.2022.104696>,
+        "pubmed:31958638",
+        "pubmed:35995382" ;
+    sc:description "BoMiProt is a manually curated, comprehensive repository of published information of bovine milk proteins." ;
+    sc:featureList edam:operation_0269,
+        edam:operation_0303,
+        edam:operation_0477,
         edam:operation_0570,
-        edam:operation_2422 ;
+        edam:operation_2422,
+        edam:operation_3904 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Other" ;
     sc:name "BoMiProt" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <http://bomiprot.org/help.php> ;
+    sc:softwareVersion "2.0" ;
     sc:url "http://bomiprot.org" .
 
 <https://bio.tools/bomp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0736,
@@ -117006,7 +105482,7 @@ Authors: Anastasia Voronkova, Pavel Sulimov, and Attila Kertesz-Farkas National
     biotools:primaryContact "BOMP Support" .
 
 <https://bio.tools/bonb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3360 ;
@@ -117024,7 +105500,7 @@ Authors: Anastasia Voronkova, Pavel Sulimov, and Attila Kertesz-Farkas National
     biotools:primaryContact "Francesco Sambo" .
 
 <https://bio.tools/bonej2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3315,
@@ -117043,8 +105519,19 @@ Authors: Anastasia Voronkova, Pavel Sulimov, and Attila Kertesz-Farkas National
     sc:url "http://bonej.org" ;
     biotools:primaryContact <https://orcid.org/0000-0002-8021-8127> .
 
+<https://bio.tools/bonesis> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:citation <https://doi.org/10.1007/978-3-030-60327-4_11> ;
+    sc:description "Synthesis of Most Permissive Boolean Networks from network architecture and dynamical properties" ;
+    sc:isAccessibleForFree true ;
+    sc:name "BoNesis" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/bioasp/bonesis" .
+
 <https://bio.tools/bonsai> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0625,
@@ -117060,7 +105547,7 @@ Authors: Anastasia Voronkova, Pavel Sulimov, and Attila Kertesz-Farkas National
     biotools:primaryContact "Ethan M. Jewett" .
 
 <https://bio.tools/bonzeb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3304,
@@ -117078,7 +105565,7 @@ Behavioural Tracking and Analysis.""" ;
     biotools:primaryContact "Tod R. Thiele" .
 
 <https://bio.tools/boogie> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3063 ;
     sc:description "A framework for blood type prediction from genotype data." ;
@@ -117093,8 +105580,40 @@ Behavioural Tracking and Analysis.""" ;
     sc:url "http://protein.bio.unipd.it/download/" ;
     biotools:primaryContact "Silvio C.E. Tosatto" .
 
+<https://bio.tools/bookend> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workbench" ;
+    sc:applicationSubCategory edam:topic_0196,
+        edam:topic_0749,
+        edam:topic_3170,
+        edam:topic_3308,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.1186/S13059-022-02700-3>,
+        "pmcid:PMC9245221",
+        "pubmed:35768836" ;
+    sc:description "Bookend is a comprehensive framework for end-guided assembly of short-read, long-read, and end-capture RNA-seq data." ;
+    sc:featureList edam:operation_0523,
+        edam:operation_3192,
+        edam:operation_3258 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "Bookend" ;
+    sc:url "https://github.com/Gregor-Mendel-Institute/bookend" .
+
+<https://bio.tools/booleannet> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:citation <https://doi.org/10.1186/1751-0473-3-16> ;
+    sc:description "Intuitive and accessible tools for simulating biological regulatory networks in a boolean formalism" ;
+    sc:isAccessibleForFree true ;
+    sc:license "gnuplot" ;
+    sc:name "BooleanNet" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/ialbert/booleannet" .
+
 <https://bio.tools/boolink> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0780,
@@ -117107,8 +105626,18 @@ Behavioural Tracking and Analysis.""" ;
     sc:url "https://github.com/dyhe-2000/Boolink-GUI" ;
     biotools:primaryContact <https://orcid.org/0000-0003-3833-7197> .
 
+<https://bio.tools/boolnet> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:citation <https://doi.org/10.1093/bioinformatics/btq124> ;
+    sc:description "Provides methods to reconstruct and generate synchronous, asynchronous, probabilistic and temporal Boolean networks, and to analyze and visualize attractors in Boolean networks." ;
+    sc:isAccessibleForFree true ;
+    sc:name "BoolNet" ;
+    sc:softwareHelp <https://cran.r-project.org/web/packages/BoolNet/BoolNet.pdf> ;
+    sc:softwareVersion "2.1.5" ;
+    sc:url "https://cran.r-project.org/web/packages/BoolNet/index.html" .
+
 <https://bio.tools/boolspace> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_3307 ;
     sc:citation "pubmed:24166654" ;
@@ -117120,7 +105649,7 @@ Behavioural Tracking and Analysis.""" ;
     sc:url "https://sites.google.com/site/boolspace/" .
 
 <https://bio.tools/boost> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:description "Boost is a set of libraries for the C++ programming language that provides support for tasks and structures such as linear algebra, pseudorandom number generation, multithreading, image processing, regular expressions, and unit testing." ;
     sc:license "Other" ;
@@ -117131,16 +105660,34 @@ Behavioural Tracking and Analysis.""" ;
         <https://www.boost.org/doc/libs/1_76_0/more/getting_started/windows.html> ;
     sc:url "https://www.boost.org/" .
 
+<https://bio.tools/boost-rs> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workbench" ;
+    sc:applicationSubCategory edam:topic_0602,
+        edam:topic_0821,
+        edam:topic_3407,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC201>,
+        "pubmed:35412599" ;
+    sc:description "Boost-RS is an innovative general RS framework that enhances RS performance by “boosting” embedding vectors based on auxiliary data." ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "Boost-RS" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/HassounLab/Boost-RS" .
+
 <https://bio.tools/boostdm> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ] ;
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence variations" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1270" ;
-            sc:name "Feature table" ;
-            sc:sameAs "http://edamontology.org/data_1270" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1270" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Feature table" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0091,
@@ -117163,7 +105710,7 @@ Behavioural Tracking and Analysis.""" ;
     biotools:primaryContact <https://orcid.org/0000-0002-4651-4168> .
 
 <https://bio.tools/boosting-heritability> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0199,
@@ -117181,7 +105728,7 @@ Behavioural Tracking and Analysis.""" ;
     biotools:primaryContact "The Tien Mai" .
 
 <https://bio.tools/bootcomb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3575 ;
     sc:citation <https://doi.org/10.1101/2020.12.01.20241919> ;
@@ -117193,7 +105740,7 @@ Behavioural Tracking and Analysis.""" ;
     sc:url "https://CRAN.R-project.org/package=bootComb" .
 
 <https://bio.tools/bootfam> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0102,
@@ -117209,7 +105756,7 @@ Behavioural Tracking and Analysis.""" ;
     sc:url "http://www.csc.kth.se/~arve/code/bootfam/" .
 
 <https://bio.tools/bops> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script",
         "Suite" ;
     sc:applicationSubCategory edam:topic_3416 ;
@@ -117224,7 +105771,7 @@ Behavioural Tracking and Analysis.""" ;
     biotools:primaryContact <https://orcid.org/0000-0002-5029-1892> .
 
 <https://bio.tools/borf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0749,
@@ -117242,7 +105789,7 @@ Behavioural Tracking and Analysis.""" ;
     sc:url "https://github.com/betsig/borf" .
 
 <https://bio.tools/bosniak-calculator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3444,
         edam:topic_3452,
@@ -117253,8 +105800,88 @@ Behavioural Tracking and Analysis.""" ;
     sc:name "Bosniak Calculator" ;
     sc:url "https://bosniak-calculator.herokuapp.com/" .
 
+<https://bio.tools/boso> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_2640,
+        edam:topic_3375,
+        edam:topic_3407,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1371/JOURNAL.PCBI.1010180>,
+        "pmcid:PMC9187084",
+        "pubmed:35639775" ;
+    sc:description "BOSO, an R package to perform feature selection in a linear regression problem." ;
+    sc:featureList edam:operation_3435,
+        edam:operation_3659,
+        edam:operation_3936 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "BOSO" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://cran.r-project.org/web/packages/BOSO/index.html" .
+
+<https://bio.tools/boss> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_3382,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.3389/FRAI.2022.880729>,
+        "pmcid:PMC9200967",
+        "pubmed:35719691" ;
+    sc:description "Building one-shot semi-supervised (BOSS) learning on CIFAR-10 and SVHN up to attain test accuracies that are comparable to fully supervised learning." ;
+    sc:isAccessibleForFree true ;
+    sc:license "Other" ;
+    sc:name "BOSS" ;
+    sc:url "https://github.com/lnsmith54/BOSS" .
+
+<https://bio.tools/bossdb> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0611,
+        edam:topic_3071,
+        edam:topic_3304,
+        edam:topic_3384,
+        edam:topic_3452 ;
+    sc:citation <https://doi.org/10.3389/FNINF.2022.828787>,
+        "pmcid:PMC8885591",
+        "pubmed:35242021" ;
+    sc:description "Scalable volumetric 3D and 4D database for the cloud." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3431,
+        edam:operation_3761 ;
+    sc:isAccessibleForFree true ;
+    sc:name "BossDB" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://bossdb.org/" .
+
+<https://bio.tools/botryosphaeriales> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0621,
+        edam:topic_0637,
+        edam:topic_0780,
+        edam:topic_3068,
+        edam:topic_3305 ;
+    sc:citation <https://doi.org/10.1093/DATABASE/BAAB061>,
+        "pmcid:PMC8517499",
+        "pubmed:34651182" ;
+    sc:description "Is an online platform focuses on providing an up-to-date account of Botryosphaeriales with notes on orders, families and genera and species, keeping abreast of the current literature." ;
+    sc:isAccessibleForFree true ;
+    sc:name "Botryosphaeriales" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://botryosphaeriales.org/" .
+
 <https://bio.tools/bottled_saft> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2275,
@@ -117272,7 +105899,7 @@ Behavioural Tracking and Analysis.""" ;
     biotools:primaryContact "E. A. Müller" .
 
 <https://bio.tools/botxminer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3068 ;
@@ -117289,7 +105916,7 @@ Behavioural Tracking and Analysis.""" ;
     biotools:primaryContact "BotDB team" .
 
 <https://bio.tools/bound2learn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0593,
         edam:topic_0654,
@@ -117306,7 +105933,7 @@ Behavioural Tracking and Analysis.""" ;
     biotools:primaryContact <https://orcid.org/0000-0002-5330-3481> .
 
 <https://bio.tools/boutiques> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0605,
@@ -117323,8 +105950,28 @@ Behavioural Tracking and Analysis.""" ;
     sc:url "http://boutiques.github.io/" ;
     biotools:primaryContact "Tristan Glatard" .
 
+<https://bio.tools/bovids> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workbench",
+        "Workflow" ;
+    sc:applicationSubCategory edam:topic_3382,
+        edam:topic_3500,
+        edam:topic_3810 ;
+    sc:citation <https://doi.org/10.1002/ece3.8701>,
+        "pmcid:PMC8928879",
+        "pubmed:35342615" ;
+    sc:description "A deep learning-based software for pose estimation to evaluate nightly behavior and its application to Common Elands (Tragelaphus oryx) in zoos." ;
+    sc:featureList edam:operation_3454 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "BOVIDS" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/Klimroth/BOVIDS" .
+
 <https://bio.tools/bow> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_3071 ;
@@ -117339,7 +105986,7 @@ Behavioural Tracking and Analysis.""" ;
     biotools:primaryContact "Dong Xie's contact form" .
 
 <https://bio.tools/bow-gbdt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0820,
@@ -117357,14 +106004,13 @@ Behavioural Tracking and Analysis.""" ;
 
 <https://bio.tools/bowhead> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3449" ;
-            sc:name "Cell migration track image" ;
-            sc:sameAs "http://edamontology.org/data_3449" ] ;
+            sc:additionalType "http://edamontology.org/data_3449" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Cell migration track image" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_2269,
@@ -117385,26 +106031,26 @@ Behavioural Tracking and Analysis.""" ;
 
 <https://bio.tools/bowtie> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1933" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
+            sc:name "Sequence trace" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
@@ -117431,14 +106077,14 @@ Behavioural Tracking and Analysis.""" ;
 
 <https://bio.tools/bowtie2> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ] ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Nucleic acid sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1383" ;
-            sc:name "Sequence alignment (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1383" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1383" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
+            sc:name "Sequence alignment (nucleic acid)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0622 ;
@@ -117469,7 +106115,7 @@ Behavioural Tracking and Analysis.""" ;
     biotools:primaryContact "Ben Langmead" .
 
 <https://bio.tools/boxshade> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -117493,7 +106139,7 @@ Behavioural Tracking and Analysis.""" ;
     biotools:primaryContact "Support form" .
 
 <https://bio.tools/bp4rnaseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -117512,7 +106158,7 @@ Behavioural Tracking and Analysis.""" ;
     sc:url "https://github.com/sunshanwen/BP4RNAseq" .
 
 <https://bio.tools/bp_annotate> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3335,
@@ -117528,7 +106174,7 @@ Behavioural Tracking and Analysis.""" ;
     biotools:primaryContact "Alexandre Laurin" .
 
 <https://bio.tools/bpa_data_portal> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1186/s13742-016-0126-5> ;
@@ -117541,7 +106187,7 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
     sc:url "https://data.bioplatforms.com/organization/pages/bioplatforms-australia/api-access" .
 
 <https://bio.tools/bpac> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3474 ;
@@ -117557,7 +106203,7 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
     biotools:primaryContact "Jiang Qian" .
 
 <https://bio.tools/bpbaac> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0130,
         edam:topic_0154,
@@ -117574,8 +106220,28 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
     sc:url "http://biocomputer.bio.cuhk.edu.hk/T3DB/BPBAac.php" ;
     biotools:primaryContact "Yejun Wang" .
 
+<https://bio.tools/bpcs> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_2269,
+        edam:topic_3382,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.3758/S13428-021-01714-2>,
+        "pubmed:34846675" ;
+    sc:description "A package for Bayesian Paired Comparison analysis with Stan." ;
+    sc:featureList edam:operation_3435,
+        edam:operation_3659,
+        edam:operation_3664 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "bpcs" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://davidissamattos.github.io/bpcs/" .
+
 <https://bio.tools/bpdrtdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0749,
@@ -117592,7 +106258,7 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
     sc:url "http://webtom.cabgrid.res.in/bpdrtdb/" .
 
 <https://bio.tools/bpe_toolkit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2814 ;
@@ -117607,10 +106273,10 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
 
 <https://bio.tools/bpforms> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library",
         "Web API",
@@ -117643,7 +106309,7 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
     sc:url "https://www.bpforms.org" .
 
 <https://bio.tools/bpipe> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0605,
@@ -117657,7 +106323,7 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
     sc:url "http://docs.bpipe.org/" .
 
 <https://bio.tools/bpla_kernel> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_3168,
@@ -117673,7 +106339,7 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
     biotools:primaryContact "Kengo SATO" .
 
 <https://bio.tools/bpm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0091 ;
     sc:citation <https://doi.org/10.7490/f1000research.1110127.1> ;
@@ -117689,7 +106355,7 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
     biotools:primaryContact <https://orcid.org/0000-0002-0222-4273> .
 
 <https://bio.tools/bpm-matlab> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_3452 ;
     sc:citation <https://doi.org/10.1364/OE.420493>,
@@ -117702,7 +106368,7 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
     biotools:primaryContact <https://orcid.org/0000-0002-3134-5453> .
 
 <https://bio.tools/bpms> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0602,
@@ -117718,8 +106384,27 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
     sc:url "http://bcb.cs.tufts.edu/validatedBPM/index.html" ;
     biotools:primaryContact "Ben Hescott" .
 
+<https://bio.tools/bpnet> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0097,
+        edam:topic_0099,
+        edam:topic_0154,
+        edam:topic_3382 ;
+    sc:citation <https://doi.org/10.1007/S10822-021-00438-X>,
+        "pubmed:35059942" ;
+    sc:description "This software is for computing base pair networks found in DNA/RNA. The software also calculates the overlap based network computations." ;
+    sc:featureList edam:operation_0394,
+        edam:operation_0570,
+        edam:operation_3925 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "BPNet" ;
+    sc:operatingSystem "Linux" ;
+    sc:url "https://github.com/computational-biology/bpnet" .
+
 <https://bio.tools/bpositive> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_3299 ;
     sc:author <https://orcid.org/0000-0001-8749-2703>,
@@ -117737,7 +106422,7 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
     biotools:primaryContact <https://orcid.org/0000-0001-7032-5220> .
 
 <https://bio.tools/bpp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3293 ;
@@ -117755,8 +106440,33 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
         <http://abacus.gene.ucl.ac.uk/software/CommandLine.Windows.pdf> ;
     sc:url "http://abacus.gene.ucl.ac.uk/software.html" .
 
+<https://bio.tools/bpprc> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Bioinformatics portal",
+        "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0078,
+        edam:topic_0089,
+        edam:topic_0780,
+        edam:topic_3297,
+        edam:topic_3810 ;
+    sc:citation <https://doi.org/10.1093/DATABASE/BAAC022>,
+        "pmcid:PMC9216523",
+        "pubmed:35396594" ;
+    sc:description "A web-based tool to access and analyse bacterial pesticidal proteins." ;
+    sc:featureList edam:operation_0474,
+        edam:operation_2421,
+        edam:operation_2997 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "BPPRC" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://www.bpprc.org" .
+
 <https://bio.tools/bprimm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3053 ;
@@ -117773,7 +106483,7 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
     sc:url "http://www.bios.unc.edu/~weisun/software/BPrimm.htm" .
 
 <https://bio.tools/bprmeth> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3518 ;
@@ -117791,7 +106501,7 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
     biotools:primaryContact "Chantriolnt-Andreas Kapourani" .
 
 <https://bio.tools/bprompt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0602,
@@ -117812,7 +106522,7 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
     biotools:primaryContact "Support" .
 
 <https://bio.tools/bquant> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0593,
         edam:topic_3071,
@@ -117830,7 +106540,7 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
         "Olga Vitek" .
 
 <https://bio.tools/bracken> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3174,
         edam:topic_3697 ;
@@ -117843,20 +106553,44 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
     sc:softwareHelp <https://ccb.jhu.edu/software/bracken/index.shtml?t=manual> ;
     sc:url "https://ccb.jhu.edu/software/bracken/" .
 
+<https://bio.tools/bracoli> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0209,
+        edam:topic_2258,
+        edam:topic_3343,
+        edam:topic_3375 ;
+    sc:citation <https://doi.org/10.1007/S11030-022-10386-9>,
+        "pubmed:35089481" ;
+    sc:description "The Brazilian Compound Library (BraCoLi) a repository of chemical and biological information for drug design." ;
+    sc:featureList edam:operation_2939,
+        edam:operation_3216,
+        edam:operation_3431,
+        edam:operation_3891,
+        edam:operation_4009 ;
+    sc:isAccessibleForFree true ;
+    sc:name "BraCoLi" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareVersion "1.0" ;
+    sc:url "https://www.farmacia.ufmg.br/qf/downloads/" .
+
 <https://bio.tools/brain> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ],
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_3554" ;
+            sc:name "Protein sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1857" ;
-            sc:name "Atomic occupancy" ;
-            sc:sameAs "http://edamontology.org/data_1857" ] ;
+            sc:additionalType "http://edamontology.org/data_1857" ;
+            sc:encodingFormat "http://edamontology.org/format_3554" ;
+            sc:name "Atomic occupancy" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3603" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -117881,7 +106615,7 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
     biotools:primaryContact "Piotr Dittwald" .
 
 <https://bio.tools/brain-extraction-ct-cta-images> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -117898,7 +106632,7 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
     biotools:primaryContact "Wu Qiu" .
 
 <https://bio.tools/brain-mri-age-classification> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3304,
@@ -117915,7 +106649,7 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
     biotools:primaryContact "Vijay Iyer" .
 
 <https://bio.tools/brain-mri-tumor-detection-classification> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3304,
@@ -117935,7 +106669,7 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
     biotools:primaryContact "Manu BN" .
 
 <https://bio.tools/brain2mesh> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0593,
         edam:topic_3067,
@@ -117952,7 +106686,7 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
     sc:url "http://mcx.space/brain2mesh" .
 
 <https://bio.tools/brain_uk> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0634,
@@ -117968,8 +106702,31 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
         "Windows" ;
     sc:url "http://www.brain-uk.org" .
 
+<https://bio.tools/brainbase> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Bioinformatics portal",
+        "Database portal" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0634,
+        edam:topic_3173,
+        edam:topic_3304,
+        edam:topic_3374 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAB987>,
+        "pmcid:PMC8728122",
+        "pubmed:34718720" ;
+    sc:description "BrainBase is a curated knowledgebase for brain diseases." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_2422,
+        edam:operation_2436 ;
+    sc:isAccessibleForFree true ;
+    sc:name "BrainBase" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://ngdc.cncb.ac.cn/brainbase/faq" .
+
 <https://bio.tools/braincloud> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2885,
@@ -117983,7 +106740,7 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
     sc:url "http://braincloud.jhmi.edu/" .
 
 <https://bio.tools/brainexp-npd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3170,
@@ -118001,8 +106758,27 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
         "Windows" ;
     sc:url "http://brainexpnpd.org:8088/BrainEXPNPD/" .
 
+<https://bio.tools/brainfd> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Desktop application" ;
+    sc:applicationSubCategory edam:topic_3315,
+        edam:topic_3360,
+        edam:topic_3384,
+        edam:topic_3444 ;
+    sc:citation <https://doi.org/10.3389/FNAGI.2021.765185>,
+        "pmcid:PMC8662626",
+        "pubmed:34899274" ;
+    sc:description "Measuring the Intracranial Brain Volume With Fractal Dimension. The validation of the BrainFD software is based on T1-weighted MRI images from the Open Access Series of Imaging Studies (OASIS)-3 brain database, where each participant has multiple MRI scan sessions." ;
+    sc:featureList edam:operation_3443,
+        edam:operation_3659,
+        edam:operation_3799 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "BrainFD" ;
+    sc:url "https://github.com/BrainLabVol/BrainFD" .
+
 <https://bio.tools/braingenie> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0625,
@@ -118019,7 +106795,7 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
     sc:url "https://github.com/hessJ/BrainGENIE" .
 
 <https://bio.tools/brainiak> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3304,
         edam:topic_3372,
@@ -118040,7 +106816,7 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
     sc:url "http://brainiak.org" .
 
 <https://bio.tools/brainlit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3304,
@@ -118063,7 +106839,7 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
     sc:url "http://brainlit.neurodata.io/" .
 
 <https://bio.tools/brainnetclass> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3304,
@@ -118080,7 +106856,7 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
     sc:url "https://github.com/zzstefan/BrainNetClass" .
 
 <https://bio.tools/brainpainter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3304,
@@ -118097,8 +106873,51 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
     sc:name "BrainPainter" ;
     sc:url "http://brainpainter.csail.mit.edu" .
 
+<https://bio.tools/brainpalmseq> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0601,
+        edam:topic_0821,
+        edam:topic_3170,
+        edam:topic_3334 ;
+    sc:citation <https://doi.org/10.1101/2021.11.23.468539> ;
+    sc:description "A curated RNA-seq database of palmitoylating and de-palmitoylating enzyme expression in the mouse brain." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_0337,
+        edam:operation_0417,
+        edam:operation_3463 ;
+    sc:isAccessibleForFree true ;
+    sc:name "BrainPalmSeq" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://brainpalmseq.med.ubc.ca/" .
+
+<https://bio.tools/brainquake> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Suite" ;
+    sc:applicationSubCategory edam:topic_0769,
+        edam:topic_3304,
+        edam:topic_3421,
+        edam:topic_3444,
+        edam:topic_3452 ;
+    sc:citation <https://doi.org/10.3389/FNINF.2021.773890>,
+        "pmcid:PMC8782204",
+        "pubmed:35069168" ;
+    sc:description "A multi-modal neurodata processing software for intracranial stereo-encephalography (SEEG) electrode localization, ictal & inter-ictal data analysis, and cortical surface reconstruction." ;
+    sc:featureList edam:operation_3435 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Apache-2.0" ;
+    sc:name "BrainQuake" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/HongLabTHU/Brainquake" .
+
 <https://bio.tools/brainrender> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3304,
@@ -118114,7 +106933,7 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
     sc:url "https://github.com/brainglobe/brainrender" .
 
 <https://bio.tools/brainscope> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3308,
         edam:topic_3334,
@@ -118137,7 +106956,7 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
         "Sjoerd M.H. Huisman" .
 
 <https://bio.tools/brainstars> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203 ;
@@ -118155,7 +106974,7 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
     biotools:primaryContact "Itoshi NIKAIDO" .
 
 <https://bio.tools/braintown> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3383,
@@ -118173,7 +106992,7 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
     biotools:primaryContact "Michael S. Smirnov" .
 
 <https://bio.tools/brainwiki> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3067,
         edam:topic_3295,
@@ -118188,7 +107007,7 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
     sc:url "http://Brainwiki.org" .
 
 <https://bio.tools/braker1> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0769,
@@ -118202,7 +107021,7 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
     sc:url "http://bioinf.uni-greifswald.de/bioinf/braker/index.html" .
 
 <https://bio.tools/branching-process-simulator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344 ;
@@ -118217,7 +107036,7 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
     biotools:primaryContact "Plamen Trayanov" .
 
 <https://bio.tools/branchpointer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0199,
@@ -118239,7 +107058,7 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
     biotools:primaryContact "Beth Signal" .
 
 <https://bio.tools/braneart> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0130,
@@ -118260,7 +107079,7 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
     sc:url "http://babylone.3bio.ulb.ac.be/BRANEart" .
 
 <https://bio.tools/brass> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0780,
         edam:topic_3070,
@@ -118274,7 +107093,7 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
     sc:url "http://millar.bio.ed.ac.uk/PEBrown/BRASS/BrassPage.htm" .
 
 <https://bio.tools/brassica_genome> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_3070 ;
     sc:citation <https://doi.org/10.1038/ng.919> ;
@@ -118290,7 +107109,7 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
     biotools:primaryContact "Australia" .
 
 <https://bio.tools/brassicaedb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0625,
         edam:topic_0780,
@@ -118309,7 +107128,7 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
     sc:url "https://biodb.swu.edu.cn/brassica/" .
 
 <https://bio.tools/brat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3173,
         edam:topic_3295 ;
@@ -118329,7 +107148,7 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
         "Sampo Pyysalo" .
 
 <https://bio.tools/brat-biomarker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3172,
@@ -118347,7 +107166,7 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
     sc:url "https://www.magnoliasci.com/brat" .
 
 <https://bio.tools/brats-toolkit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_3304,
@@ -118365,7 +107184,7 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
     sc:url "https://neuronflow.github.io/BraTS-Toolkit/" .
 
 <https://bio.tools/braviz> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_3334,
@@ -118383,7 +107202,7 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
     biotools:primaryContact "Diego A. Angulo" .
 
 <https://bio.tools/brb-arraytools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0654,
@@ -118397,7 +107216,7 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
     sc:url "http://linus.nci.nih.gov/BRB-ArrayTools.html" .
 
 <https://bio.tools/brca-diagnostic> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0199,
@@ -118418,7 +107237,7 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
     biotools:primaryContact "Support" .
 
 <https://bio.tools/brca_share> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0199,
@@ -118440,7 +107259,7 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
     biotools:primaryContact "BRCAShare Support" .
 
 <https://bio.tools/brcaseg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_2640,
@@ -118456,7 +107275,7 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
     sc:url "https://github.com/Serian1992/ImgBio" .
 
 <https://bio.tools/brea> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3379 ;
     sc:citation <https://doi.org/10.1093/BIOSTATISTICS/KXZ029>,
@@ -118465,8 +107284,29 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
     sc:name "brea" ;
     sc:url "https://cran.r-project.org/web/packages/brea/index.html" .
 
+<https://bio.tools/breakalign> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_0622,
+        edam:topic_0654,
+        edam:topic_3168 ;
+    sc:citation <https://doi.org/10.1186/S12859-022-04621-1>,
+        "pmcid:PMC9013057",
+        "pubmed:35428171" ;
+    sc:description "A Perl program to align chimaeric (split) genomic NGS reads and allow visual confirmation of novel retroviral integrations." ;
+    sc:featureList edam:operation_0492,
+        edam:operation_3198,
+        edam:operation_3359 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-1.0" ;
+    sc:name "BreakAlign" ;
+    sc:operatingSystem "Linux",
+        "Mac" ;
+    sc:url "https://github.com/marchiem/breakalign" .
+
 <https://bio.tools/breakdancer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3175 ;
@@ -118480,7 +107320,7 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
     biotools:primaryContact "K. Chen" .
 
 <https://bio.tools/breakfusion> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0196,
@@ -118497,8 +107337,29 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
     sc:softwareVersion "1.0.1" ;
     sc:url "http://bioinformatics.mdanderson.org/main/BreakFusion#" .
 
+<https://bio.tools/breaknet> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Desktop application" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_0199,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1186/S12859-021-04499-5>,
+        "pmcid:PMC8641175",
+        "pubmed:34856923" ;
+    sc:description "A deep learning method to detect deletion from long reads alignment." ;
+    sc:featureList edam:operation_0487,
+        edam:operation_3198,
+        edam:operation_3962 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "BreakNet" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/luojunwei/BreakNet" .
+
 <https://bio.tools/breakpointR> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3168 ;
     sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTZ681>,
@@ -118509,7 +107370,7 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
     sc:url "https://bioconductor.org/packages/breakpointR" .
 
 <https://bio.tools/breakpointer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_3168 ;
@@ -118523,7 +107384,7 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
     biotools:primaryContact "Ruping Sun" .
 
 <https://bio.tools/breakseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3175 ;
     sc:citation "pubmed:20037582" ;
@@ -118537,7 +107398,7 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
     biotools:primaryContact "Mark B. Gerstein" .
 
 <https://bio.tools/breaktrans> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0102,
@@ -118555,7 +107416,7 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
     biotools:primaryContact "Ken Chen" .
 
 <https://bio.tools/breakway> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0622,
@@ -118574,20 +107435,8 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
     sc:url "https://sourceforge.net/projects/breakway/" ;
     biotools:primaryContact "Admin" .
 
-<https://bio.tools/breast> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0749,
-        edam:topic_2229,
-        edam:topic_2640 ;
-    sc:citation <https://doi.org/10.1007/S10585-019-09988-9>,
-        "pubmed:31463796" ;
-    sc:description "> VERY_LOW CONFIDENCE! | > CORRECT NAME OF TOOL COULD ALSO BE 'CUL3', 'overexpression CUL3', 'lung adenocarcinoma', 'immunohistochemistry' | Cullin 3 overexpression inhibits lung cancer metastasis and is associated with survival of lung adenocarcinoma | Kaplan Meier-plotter [Breast cancer] | Our aim was to develop an online Kaplan-Meier plotter which can be used to assess the effect of the genes on breast cancer prognosis" ;
-    sc:featureList edam:operation_3216,
-        edam:operation_3446 ;
-    sc:name "breast" ;
-    sc:url "http://kmplot.com/analysis/index.php?p=service&cancer=breast" .
-
 <https://bio.tools/breast-body-fusion> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:description "Functions to resize, place, and fuse breast phantoms to a whole-body voxel model" ;
     sc:isAccessibleForFree true ;
@@ -118601,7 +107450,7 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
     biotools:primaryContact "Joseph Rispoli" .
 
 <https://bio.tools/breast-cancer-visualiser> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3070,
@@ -118619,7 +107468,7 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
     biotools:primaryContact "Ahmed raafat" .
 
 <https://bio.tools/breastimplantanalyzer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3384,
         edam:topic_3421,
@@ -118636,7 +107485,7 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
     biotools:primaryContact "Lance Levine" .
 
 <https://bio.tools/breathe_easy_eda> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3303 ;
     sc:citation <https://doi.org/10.12688/f1000research.13849.1> ;
@@ -118651,7 +107500,7 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
     sc:url "https://github.com/johnksander/BreatheEasyEDA" .
 
 <https://bio.tools/brec> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
@@ -118668,8 +107517,27 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
     sc:name "BREC" ;
     sc:url "https://github.com/ymansour21/BREC" .
 
+<https://bio.tools/brecansurvpred> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_2640,
+        edam:topic_3305,
+        edam:topic_3577 ;
+    sc:citation <https://doi.org/10.1038/S41598-022-12228-Y>,
+        "pmcid:PMC9110408",
+        "pubmed:35577853" ;
+    sc:description "Using population-based data to evaluate the impact of adherence to endocrine therapy on survival in breast cancer through the web-application BreCanSurvPred." ;
+    sc:featureList edam:operation_3503,
+        edam:operation_3659 ;
+    sc:license "Not licensed" ;
+    sc:name "BreCanSurvPred" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://pdocomputation.snpstats.net/BreCanSurvPred" .
+
 <https://bio.tools/breedb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0085 ;
     sc:description "Relational database which aims to support breeding for quantitative agronomical traits. The database can be explored through a web-based interface, which offers tools to present basic statistical overviews such as box plots, histograms, but also multivariate tools. The tool is designed to store data from both inbreeding and out-breeding crop species and the analysis and visualization methods adapt automatically to the type of population on hand." ;
@@ -118684,7 +107552,7 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
     sc:url "https://www.wageningenur.nl/en/show/BreeDB.htm" .
 
 <https://bio.tools/breedbase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Bioinformatics portal" ;
     sc:applicationSubCategory edam:topic_0593,
         edam:topic_0625,
@@ -118700,7 +107568,7 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
     sc:url "https://breedbase.org" .
 
 <https://bio.tools/breeze> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3343,
@@ -118717,7 +107585,7 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
     sc:url "https://breeze.fimm.fi/" .
 
 <https://bio.tools/brem-sc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0121,
@@ -118736,126 +107604,96 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
 
 <https://bio.tools/brenda> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0990" ;
-            sc:name "Compound name" ;
-            sc:sameAs "http://edamontology.org/data_0990" ],
+            sc:additionalType "http://edamontology.org/data_2342" ;
+            sc:name "Pathway or network name" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3021" ;
-            sc:name "UniProt accession" ;
-            sc:sameAs "http://edamontology.org/data_3021" ],
+            sc:additionalType "http://edamontology.org/data_1179" ;
+            sc:name "NCBI taxonomy ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1011" ;
-            sc:name "EC number" ;
-            sc:sameAs "http://edamontology.org/data_1011" ],
+            sc:additionalType "http://edamontology.org/data_1051" ;
+            sc:name "Ontology name" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2342" ;
-            sc:name "Pathway or network name" ;
-            sc:sameAs "http://edamontology.org/data_2342" ],
+            sc:additionalType "http://edamontology.org/data_0990" ;
+            sc:name "Compound name" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1046" ;
-            sc:name "Strain name" ;
-            sc:sameAs "http://edamontology.org/data_1046" ],
+            sc:additionalType "http://edamontology.org/data_1012" ;
+            sc:name "Enzyme name" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2299" ;
-            sc:name "Gene name" ;
-            sc:sameAs "http://edamontology.org/data_2299" ],
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+            sc:name "Reaction ID" ],
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-            sc:identifier "http://edamontology.org/data_1179" ;
-            sc:name "NCBI taxonomy ID" ;
-            sc:sameAs "http://edamontology.org/data_1179" ],
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+            sc:name "PubMed ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2365" ;
-            sc:name "Pathway or network accession" ;
-            sc:sameAs "http://edamontology.org/data_2365" ],
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+            sc:name "UniProt ID" ],
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-            sc:identifier "http://edamontology.org/data_1051" ;
-            sc:name "Ontology name" ;
-            sc:sameAs "http://edamontology.org/data_1051" ],
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-            sc:identifier "http://edamontology.org/data_1187" ;
-            sc:name "PubMed ID" ;
-            sc:sameAs "http://edamontology.org/data_1187" ],
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-            sc:identifier "http://edamontology.org/data_2024" ;
-            sc:name "Enzyme kinetics data" ;
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-            sc:identifier "http://edamontology.org/data_2108" ;
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-            sc:sameAs "http://edamontology.org/data_2108" ],
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-            sc:identifier "http://edamontology.org/data_1012" ;
-            sc:name "Enzyme name" ;
-            sc:sameAs "http://edamontology.org/data_1012" ],
+            sc:additionalType "http://edamontology.org/data_1127" ;
+            sc:name "PDB ID" ],
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-            sc:identifier "http://edamontology.org/data_1127" ;
-            sc:name "PDB ID" ;
-            sc:sameAs "http://edamontology.org/data_1127" ],
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+            sc:name "Pathway or network accession" ],
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-            sc:identifier "http://edamontology.org/data_2291" ;
-            sc:name "UniProt ID" ;
-            sc:sameAs "http://edamontology.org/data_2291" ],
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+            sc:name "Strain name" ],
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-            sc:identifier "http://edamontology.org/data_2909" ;
-            sc:name "Organism name" ;
-            sc:sameAs "http://edamontology.org/data_2909" ] ;
+            sc:additionalType "http://edamontology.org/data_2909" ;
+            sc:name "Organism name" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2365" ;
-            sc:name "Pathway or network accession" ;
-            sc:sameAs "http://edamontology.org/data_2365" ],
+            sc:additionalType "http://edamontology.org/data_2291" ;
+            sc:name "UniProt ID" ],
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-            sc:identifier "http://edamontology.org/data_1179" ;
-            sc:name "NCBI taxonomy ID" ;
-            sc:sameAs "http://edamontology.org/data_1179" ],
+            sc:additionalType "http://edamontology.org/data_1046" ;
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-            sc:identifier "http://edamontology.org/data_2291" ;
-            sc:name "UniProt ID" ;
-            sc:sameAs "http://edamontology.org/data_2291" ],
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+            sc:name "UniProt accession" ],
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-            sc:identifier "http://edamontology.org/data_3021" ;
-            sc:name "UniProt accession" ;
-            sc:sameAs "http://edamontology.org/data_3021" ],
+            sc:additionalType "http://edamontology.org/data_2700" ;
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-            sc:identifier "http://edamontology.org/data_2700" ;
-            sc:name "CATH identifier" ;
-            sc:sameAs "http://edamontology.org/data_2700" ],
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-            sc:identifier "http://edamontology.org/data_2342" ;
-            sc:name "Pathway or network name" ;
-            sc:sameAs "http://edamontology.org/data_2342" ],
+            sc:additionalType "http://edamontology.org/data_2024" ;
+            sc:name "Enzyme kinetics data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2909" ;
-            sc:name "Organism name" ;
-            sc:sameAs "http://edamontology.org/data_2909" ],
+            sc:additionalType "http://edamontology.org/data_2108" ;
+            sc:name "Reaction ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1012" ;
-            sc:name "Enzyme name" ;
-            sc:sameAs "http://edamontology.org/data_1012" ],
+            sc:additionalType "http://edamontology.org/data_2342" ;
+            sc:name "Pathway or network name" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1011" ;
-            sc:name "EC number" ;
-            sc:sameAs "http://edamontology.org/data_1011" ],
+            sc:additionalType "http://edamontology.org/data_2365" ;
+            sc:name "Pathway or network accession" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1046" ;
-            sc:name "Strain name" ;
-            sc:sameAs "http://edamontology.org/data_1046" ],
+            sc:additionalType "http://edamontology.org/data_2909" ;
+            sc:name "Organism name" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2108" ;
-            sc:name "Reaction ID" ;
-            sc:sameAs "http://edamontology.org/data_2108" ],
+            sc:additionalType "http://edamontology.org/data_1039" ;
+            sc:name "SCOP domain identifier" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1127" ;
-            sc:name "PDB ID" ;
-            sc:sameAs "http://edamontology.org/data_1127" ],
+            sc:additionalType "http://edamontology.org/data_1012" ;
+            sc:name "Enzyme name" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2024" ;
-            sc:name "Enzyme kinetics data" ;
-            sc:sameAs "http://edamontology.org/data_2024" ],
+            sc:additionalType "http://edamontology.org/data_1127" ;
+            sc:name "PDB ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1039" ;
-            sc:name "SCOP domain identifier" ;
-            sc:sameAs "http://edamontology.org/data_1039" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1179" ;
+            sc:name "NCBI taxonomy ID" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0821,
@@ -118903,22 +107741,22 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
 
 <https://bio.tools/breseq> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ] ;
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
+            sc:name "Sequence trace" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_2533,
@@ -118939,22 +107777,22 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
 
 <https://bio.tools/breseq_bam2aln> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ] ;
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Sequence trace" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0102,
@@ -118975,26 +107813,26 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
 
 <https://bio.tools/breseq_bam2cov> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Sequence trace" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3508" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Image" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0092,
@@ -119014,7 +107852,7 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
     biotools:primaryContact "Galaxy Support Team" .
 
 <https://bio.tools/brewery> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0082,
@@ -119033,8 +107871,54 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
     sc:name "Brewery" ;
     sc:url "http://distilldeep.ucd.ie/brewery/" .
 
+<https://bio.tools/brh> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0625,
+        edam:topic_0769,
+        edam:topic_3303,
+        edam:topic_3379,
+        edam:topic_3571 ;
+    sc:citation <https://doi.org/10.1101/2021.10.08.21264768> ;
+    sc:description "The Biomedical Research Hub (BRH) is a cloud-based and multifunctional web interface that provides a secure environment for discovery and analysis of scientific results and data." ;
+    sc:featureList edam:operation_0224,
+        edam:operation_3436,
+        edam:operation_3761 ;
+    sc:isAccessibleForFree true ;
+    sc:name "BRH" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://brh.data-commons.org/dashboard/Public/index.html> ;
+    sc:url "https://brh.data-commons.org" .
+
+<https://bio.tools/brhd> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0218,
+        edam:topic_0634,
+        edam:topic_3067,
+        edam:topic_3304,
+        edam:topic_3697 ;
+    sc:citation <https://doi.org/10.3390/BRAINSCI12050638>,
+        "pmcid:PMC9139690",
+        "pubmed:35625024" ;
+    sc:description "Brain Research Hotspot Database (BRHD) a A comprehensive platform for the latest advances in brain research" ;
+    sc:featureList edam:operation_2421,
+        edam:operation_2422,
+        edam:operation_3435 ;
+    sc:isAccessibleForFree true ;
+    sc:license "CC-BY-SA-3.0" ;
+    sc:name "BRHD" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://www.brainresearch.cn/" .
+
 <https://bio.tools/brian2genn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3068,
         edam:topic_3304,
         edam:topic_3474 ;
@@ -119050,7 +107934,7 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
     sc:url "https://github.com/brian-team/brian2genn" .
 
 <https://bio.tools/brick-cfcmc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0176,
@@ -119070,7 +107954,7 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
     sc:url "https://gitlab.com/ETh_TU_Delft/Brick-CFCMC" .
 
 <https://bio.tools/brick-plots> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0804,
         edam:topic_2640,
@@ -119087,7 +107971,7 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
     sc:url "https://github.com/NortonS1/BrickPlots" .
 
 <https://bio.tools/bridge> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203 ;
@@ -119105,7 +107989,7 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
     biotools:primaryContact "Raphael Gottardo" .
 
 <https://bio.tools/bridge-galaxy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0154,
@@ -119123,7 +108007,7 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
     sc:url "https://github.com/scientificomputing/BRIDGE" .
 
 <https://bio.tools/bridge-membrane> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0153,
@@ -119144,37 +108028,30 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
 
 <https://bio.tools/bridgedb> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1086" ;
-            sc:name "Compound identifier" ;
-            sc:sameAs "http://edamontology.org/data_1086" ],
+            sc:additionalType "http://edamontology.org/data_0989" ;
+            sc:name "Protein identifier" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0989" ;
-            sc:name "Protein identifier" ;
-            sc:sameAs "http://edamontology.org/data_0989" ],
+            sc:additionalType "http://edamontology.org/data_1025" ;
+            sc:name "Gene identifier" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1025" ;
-            sc:name "Gene identifier" ;
-            sc:sameAs "http://edamontology.org/data_1025" ] ;
+            sc:additionalType "http://edamontology.org/data_1086" ;
+            sc:name "Compound identifier" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1086" ;
-            sc:name "Compound identifier" ;
-            sc:sameAs "http://edamontology.org/data_1086" ],
+            sc:additionalType "http://edamontology.org/data_0989" ;
+            sc:name "Protein identifier" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0989" ;
-            sc:name "Protein identifier" ;
-            sc:sameAs "http://edamontology.org/data_0989" ],
+            sc:additionalType "http://edamontology.org/data_1086" ;
+            sc:name "Compound identifier" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1025" ;
-            sc:name "Gene identifier" ;
-            sc:sameAs "http://edamontology.org/data_1025" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1025" ;
+            sc:name "Gene identifier" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0622,
         edam:topic_3172,
         edam:topic_3325 ;
     sc:citation <https://doi.org/10.1007/978-3-319-11964-9_7>,
-        <https://doi.org/10.1186/1471-2105-11-5>,
         "pubmed:20047655" ;
     sc:description "BridgeDb is a framework to map identifiers between various databases.  It includes a Java library that provides an API to work with identifier-identifier mapping databases and resources." ;
     sc:featureList edam:operation_0224 ;
@@ -119189,44 +108066,36 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
         "Maastricht University",
         "Manchester University",
         "maastrichtuniversity.nl" ;
-    sc:softwareHelp <https://www.bridgedb.org/bridgedb-framework/> ;
-    sc:softwareVersion "1" ;
+    sc:softwareHelp <https://bridgedb.github.io/pages/docs.html> ;
+    sc:softwareVersion "3.0.13" ;
     sc:url "http://www.bridgedb.org/" .
 
 <https://bio.tools/bridgedb_api> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0842" ;
-            sc:name "Identifier" ;
-            sc:sameAs "http://edamontology.org/data_0842" ],
+            sc:additionalType "http://edamontology.org/data_0842" ;
+            sc:name "Identifier" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0842" ;
-            sc:name "Identifier" ;
-            sc:sameAs "http://edamontology.org/data_0842" ],
+            sc:additionalType "http://edamontology.org/data_0842" ;
+            sc:name "Identifier" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_1045" ;
+            sc:name "Species name" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1045" ;
-            sc:name "Species name" ;
-            sc:sameAs "http://edamontology.org/data_1045" ],
+            sc:additionalType "http://edamontology.org/data_0842" ;
+            sc:name "Identifier" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0842" ;
-            sc:name "Identifier" ;
-            sc:sameAs "http://edamontology.org/data_0842" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0842" ;
-            sc:name "Identifier" ;
-            sc:sameAs "http://edamontology.org/data_0842" ] ;
+            sc:additionalType "http://edamontology.org/data_0842" ;
+            sc:name "Identifier" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API" ;
     sc:applicationSubCategory edam:topic_3325,
         edam:topic_3345 ;
@@ -119242,38 +108111,38 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
 
 <https://bio.tools/bridgedbr> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1086" ;
-            sc:name "Compound identifier" ;
-            sc:sameAs "http://edamontology.org/data_1086" ],
+            sc:additionalType "http://edamontology.org/data_1025" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Gene identifier" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2108" ;
-            sc:name "Reaction ID" ;
-            sc:sameAs "http://edamontology.org/data_2108" ],
+            sc:additionalType "http://edamontology.org/data_2108" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Reaction ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1025" ;
-            sc:name "Gene identifier" ;
-            sc:sameAs "http://edamontology.org/data_1025" ],
+            sc:additionalType "http://edamontology.org/data_1086" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Compound identifier" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0989" ;
-            sc:name "Protein identifier" ;
-            sc:sameAs "http://edamontology.org/data_0989" ] ;
+            sc:additionalType "http://edamontology.org/data_0989" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Protein identifier" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0989" ;
-            sc:name "Protein identifier" ;
-            sc:sameAs "http://edamontology.org/data_0989" ],
+            sc:additionalType "http://edamontology.org/data_1086" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Compound identifier" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1025" ;
-            sc:name "Gene identifier" ;
-            sc:sameAs "http://edamontology.org/data_1025" ],
+            sc:additionalType "http://edamontology.org/data_2108" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Reaction ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2108" ;
-            sc:name "Reaction ID" ;
-            sc:sameAs "http://edamontology.org/data_2108" ],
+            sc:additionalType "http://edamontology.org/data_1025" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Gene identifier" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1086" ;
-            sc:name "Compound identifier" ;
-            sc:sameAs "http://edamontology.org/data_1086" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0989" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Protein identifier" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3325,
@@ -119288,12 +108157,33 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
         "Mac",
         "Windows" ;
     sc:softwareHelp <http://bioconductor.org/packages/release/bioc/html/BridgeDbR.html> ;
-    sc:softwareVersion "1.8.0" ;
+    sc:softwareVersion "1.8.0",
+        "2.4.0" ;
     sc:url "http://bioconductor.org/packages/release/bioc/html/BridgeDbR.html" ;
     biotools:primaryContact "Egon Willighagen" .
 
+<https://bio.tools/bridgedpi> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workbench" ;
+    sc:applicationSubCategory edam:topic_0128,
+        edam:topic_0154,
+        edam:topic_3336,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC155>,
+        "pubmed:35274672" ;
+    sc:description "A Novel Graph Neural Network for Predicting Drug-Protein Interactions." ;
+    sc:featureList edam:operation_2492,
+        edam:operation_3927,
+        edam:operation_3938 ;
+    sc:license "Apache-2.0" ;
+    sc:name "BridgeDPI" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/SenseTime-Knowledge-Mining/BridgeDPI" .
+
 <https://bio.tools/bridger> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3308 ;
@@ -119309,7 +108199,7 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
     sc:url "https://sourceforge.net/projects/rnaseqassembly/files/?source=navbar" .
 
 <https://bio.tools/bridging-age-gap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3421,
@@ -119323,7 +108213,7 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
     sc:url "https://agegap.shef.ac.uk/" .
 
 <https://bio.tools/brig> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0797 ;
     sc:citation <https://doi.org/10.1186/1471-2164-12-402> ;
@@ -119339,7 +108229,7 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
     biotools:primaryContact "Scott A Beatson" .
 
 <https://bio.tools/brio> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0160,
@@ -119358,7 +108248,7 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
     biotools:primaryContact <https://orcid.org/0000-0001-9530-7504> .
 
 <https://bio.tools/brisskit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Database portal",
         "Web API",
@@ -119396,7 +108286,7 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
         "Shajid Issa" .
 
 <https://bio.tools/brix> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0130,
@@ -119418,7 +108308,7 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
     biotools:primaryContact "Luis Serrano" .
 
 <https://bio.tools/broadpeak> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3169 ;
@@ -119432,7 +108322,7 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
     sc:url "http://jordan.biology.gatech.edu/page/software/broadpeak/index.html" .
 
 <https://bio.tools/brockman> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Suite" ;
     sc:applicationSubCategory edam:topic_0749,
@@ -119450,7 +108340,7 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
         "Carl G. de Boer" .
 
 <https://bio.tools/bronco> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0218,
@@ -119470,7 +108360,7 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
     biotools:primaryContact "Kyubum Lee" .
 
 <https://bio.tools/bronco-corpus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Ontology" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0218,
@@ -119487,7 +108377,7 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
     biotools:primaryContact "Ulf Leser" .
 
 <https://bio.tools/brop> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0634,
@@ -119507,7 +108397,7 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
     biotools:primaryContact "T. Chen" .
 
 <https://bio.tools/brownian_motion_simulator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3307,
         edam:topic_3361,
@@ -119520,7 +108410,7 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
     sc:url "http://pitgroup.org/brownian/" .
 
 <https://bio.tools/browserviz> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0092 ;
@@ -119537,7 +108427,7 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
     biotools:primaryContact "Paul Shannon" .
 
 <https://bio.tools/browservizdemo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -119556,21 +108446,8 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
     sc:url "http://bioconductor.org/packages/release/bioc/html/BrowserVizDemo.html" ;
     biotools:primaryContact "Paul Shannon" .
 
-<https://bio.tools/browsing_downloading> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0780,
-        edam:topic_3517,
-        edam:topic_3810 ;
-    sc:citation <https://doi.org/10.1093/NAR/GKZ828>,
-        "pubmed:31566222" ;
-    sc:description "> LOW CONFIDENCE! | > COMMON LINK WITH (PUB. & NAME DIFFERENT) bio.tools/3CDB (BIG.AC.CN) | > CORRECT NAME OF TOOL COULD ALSO BE 'GWAS Atlas' | a curated resource of genome-wide variant-trait associations in plants and animals | a curated resource of genome-wide variant-trait associations | e.g. plant; plant height; Zm00001d021954; chr1:14702150-37601000 | GWAS Atlas: a curated resource of genome-wide variant-trait associations in plants and animals. Nucleic Acids Res 2019. [PMID=31566222]" ;
-    sc:featureList edam:operation_0279,
-        edam:operation_3095,
-        edam:operation_3559 ;
-    sc:name "browsing downloading" ;
-    sc:url "https://bigd.big.ac.cn/gwas/" .
-
 <https://bio.tools/brs-nonint> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0128,
@@ -119586,7 +108463,7 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
     sc:url "http://www.bioinformatics.leeds.ac.uk/BRS-nonint/" .
 
 <https://bio.tools/brumir> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_0780,
@@ -119603,7 +108480,7 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
     sc:url "https://github.com/camoragaq/BrumiR" .
 
 <https://bio.tools/bs-seeker2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0102,
@@ -119623,7 +108500,7 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
     biotools:primaryContact "Weilong Guo" .
 
 <https://bio.tools/bs-snper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_2269,
@@ -119637,7 +108514,7 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
     sc:url "https://github.com/hellbelly/BS-Snper" .
 
 <https://bio.tools/bs-virus-finder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0781,
         edam:topic_3295,
@@ -119653,7 +108530,7 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
     biotools:primaryContact "Bolund Christian N S Pedersen" .
 
 <https://bio.tools/bs_seeker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_3173 ;
     sc:citation "pubmed:20416082" ;
@@ -119667,7 +108544,7 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
     biotools:primaryContact "Matteo Pellegrini Lab" .
 
 <https://bio.tools/bsaseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0102,
@@ -119685,7 +108562,7 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
     sc:url "https://www.sciapps.org/page/bsa" .
 
 <https://bio.tools/bsbolt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0654,
@@ -119702,8 +108579,33 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
     sc:name "BSBolt" ;
     sc:url "https://github.com/NuttyLogic/BSBolt" .
 
+<https://bio.tools/bscm2tdb> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0659,
+        edam:topic_3295,
+        edam:topic_3512,
+        edam:topic_3674 ;
+    sc:citation <https://doi.org/10.3389/FGENE.2022.828292>,
+        "pmcid:PMC8965078",
+        "pubmed:35368672" ;
+    sc:description "Buffalo Subclinical Mastitis Methylome–Transcriptome database (BSCM2TDb) is a three-tier architecture-based relational database in Water Buffalo." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_3196,
+        edam:operation_3207,
+        edam:operation_3222,
+        edam:operation_3809 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Apache-2.0" ;
+    sc:name "BSCM2TDb" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://webtom.cabgrid.res.in/BSCM2TDb" .
+
 <https://bio.tools/bsdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -119726,7 +108628,7 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
     biotools:primaryContact "Marek Cieplak" .
 
 <https://bio.tools/bsdd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -119747,8 +108649,32 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
     sc:url "http://iris.physics.iisc.ernet.in/bsdd/" ;
     biotools:primaryContact "K. Sekar" .
 
+<https://bio.tools/bsde> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library",
+        "Web application",
+        "Workflow" ;
+    sc:applicationSubCategory edam:topic_0121,
+        edam:topic_0203,
+        edam:topic_0625,
+        edam:topic_3170,
+        edam:topic_3517 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC171>,
+        "pubmed:35333298" ;
+    sc:description "A single-cell RNAseq differential expression analysis approach in case-control study" ;
+    sc:featureList edam:operation_3223,
+        edam:operation_3435,
+        edam:operation_3436 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "BSDE" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://github.com/mqzhanglab/BSDE" .
+
 <https://bio.tools/bseqc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3168,
@@ -119762,7 +108688,7 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
     sc:url "https://github.com/hutuqiu/bseqc" .
 
 <https://bio.tools/bsf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3473 ;
     sc:citation <https://doi.org/10.1186/s12859-018-2210-6> ;
@@ -119780,7 +108706,7 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
     biotools:primaryContact "Samuel H. Payne" .
 
 <https://bio.tools/bsf-skeleton> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_0769,
         edam:topic_3382 ;
@@ -119794,7 +108720,7 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
     sc:url "https://github.com/leonid-sokolinsky/BSF-skeleton" .
 
 <https://bio.tools/bsfinder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0121,
@@ -119812,18 +108738,18 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
 
 <https://bio.tools/bsgenome> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Sequence record" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -119844,7 +108770,7 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
     biotools:primaryContact "H. Pagès" .
 
 <https://bio.tools/bshmm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3295 ;
@@ -119856,7 +108782,7 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
     sc:url "http://madbessoul.github.io/bshmm/" .
 
 <https://bio.tools/bsm-arc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0176,
@@ -119875,7 +108801,7 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
     sc:url "https://bsma.pdbj.org" .
 
 <https://bio.tools/bsmap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3295 ;
     sc:citation "pubmed:19635165" ;
@@ -119889,7 +108815,7 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
     biotools:primaryContact "Y. Xi" .
 
 <https://bio.tools/bsnet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3382,
@@ -119900,8 +108826,30 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
     sc:name "BSNet" ;
     sc:url "https://github.com/PRIS-CV/BSNet" .
 
+<https://bio.tools/bsoft> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0611,
+        edam:topic_2229,
+        edam:topic_3047 ;
+    sc:citation <https://doi.org/10.21769/BIOPROTOC.4393>,
+        "pmcid:PMC9081485",
+        "pubmed:35800093" ;
+    sc:description "Bsoft is a collection of programs and a platform for development of software for image and molecular processing in structural biology." ;
+    sc:featureList edam:operation_2480,
+        edam:operation_3443,
+        edam:operation_3695 ;
+    sc:license "Not licensed" ;
+    sc:name "Bsoft" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <http://bsoftwebsite.s3-website-us-east-1.amazonaws.com/> ;
+    sc:url "http://bsoft.ws" .
+
 <https://bio.tools/bsp-slim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_2275 ;
@@ -119917,7 +108865,7 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
     biotools:primaryContact "Yang Zhang" .
 
 <https://bio.tools/bspred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -119934,7 +108882,7 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
     biotools:primaryContact "Yang Zhang" .
 
 <https://bio.tools/bsqa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0218,
         edam:topic_0602,
@@ -119948,7 +108896,7 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
     sc:url "http://www.beespace.uiuc.edu/QuestionAnswer" .
 
 <https://bio.tools/bsrd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0659,
@@ -119969,7 +108917,7 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
         "Lei LI" .
 
 <https://bio.tools/bsseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3168,
@@ -119990,7 +108938,7 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
     biotools:primaryContact <http://orcid.org/0000-0003-0086-0687> .
 
 <https://bio.tools/bstools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3168,
@@ -120008,7 +108956,7 @@ The Data Portal API allows programmatic access via the standard CKAN API. The AP
     biotools:primaryContact "Zheng Wang" .
 
 <https://bio.tools/bsviewer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0625,
@@ -120024,7 +108972,7 @@ visualizer for bisulfite sequencing data.""" ;
     biotools:primaryContact "Hao Sun" .
 
 <https://bio.tools/bteval> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078 ;
     sc:citation "pubmed:15290767" ;
@@ -120034,10 +108982,10 @@ visualizer for bisulfite sequencing data.""" ;
     sc:name "BTEVAL" ;
     sc:operatingSystem "Linux" ;
     sc:softwareHelp <http://crdd.osdd.net/raghava/bteval/help.html> ;
-    sc:url "http://www.imtech.res.in/raghava/bteval" .
+    sc:url "https://webs.iiitd.edu.in/raghava/bteval" .
 
 <https://bio.tools/bto> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0621,
@@ -120059,26 +109007,26 @@ visualizer for bisulfite sequencing data.""" ;
 
 <https://bio.tools/btod_blast> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ],
+            sc:additionalType "http://edamontology.org/data_1056" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Database name" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1056" ;
-            sc:name "Database name" ;
-            sc:sameAs "http://edamontology.org/data_1056" ],
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1381" ;
-            sc:name "Sequence alignment (pair)" ;
-            sc:sameAs "http://edamontology.org/data_1381" ],
+            sc:additionalType "http://edamontology.org/data_0857" ;
+            sc:encodingFormat "http://edamontology.org/format_2066" ;
+            sc:name "Sequence search results" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0857" ;
-            sc:name "Sequence search results" ;
-            sc:sameAs "http://edamontology.org/data_0857" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1381" ;
+            sc:encodingFormat "http://edamontology.org/format_1333" ;
+            sc:name "Sequence alignment (pair)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -120095,7 +109043,7 @@ visualizer for bisulfite sequencing data.""" ;
     sc:url "https://blast.ncbi.nlm.nih.gov/Blast.cgi" .
 
 <https://bio.tools/btrim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation "pubmed:21651976" ;
@@ -120108,7 +109056,7 @@ visualizer for bisulfite sequencing data.""" ;
     biotools:primaryContact "Yong Kong" .
 
 <https://bio.tools/bttoxin_digger> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application",
         "Workflow" ;
@@ -120129,7 +109077,7 @@ visualizer for bisulfite sequencing data.""" ;
     sc:url "http://bcam.hzau.edu.cn/BtToxin_Digger" .
 
 <https://bio.tools/btw> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2269 ;
@@ -120151,22 +109099,18 @@ visualizer for bisulfite sequencing data.""" ;
 
 <https://bio.tools/btwisted> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1588" ;
-            sc:name "DNA base pair stacking energies data" ;
-            sc:sameAs "http://edamontology.org/data_1588" ],
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ],
+            sc:additionalType "http://edamontology.org/data_1588" ;
+            sc:name "DNA base pair stacking energies data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1589" ;
-            sc:name "DNA base pair twist angle data" ;
-            sc:sameAs "http://edamontology.org/data_1589" ] ;
+            sc:additionalType "http://edamontology.org/data_1589" ;
+            sc:name "DNA base pair twist angle data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0912" ;
-            sc:name "Nucleic acid property" ;
-            sc:sameAs "http://edamontology.org/data_0912" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0912" ;
+            sc:name "Nucleic acid property" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0097 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -120195,8 +109139,22 @@ visualizer for bisulfite sequencing data.""" ;
     sc:softwareVersion "r6" ;
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/btwisted.html" .
 
+<https://bio.tools/btxpred> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:citation "pubmed:18391233" ;
+    sc:description "The aim of BTXpred server is to predict bacterial toxins and its function from primary amino acid sequence using SVM, HMM and PSI-Blast" ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "BTXpred" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/btxpred/index.html> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/btxpred/index.html" .
+
 <https://bio.tools/btyper3> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0154,
@@ -120214,7 +109172,7 @@ visualizer for bisulfite sequencing data.""" ;
     sc:url "https://github.com/lmc297/BTyper3" .
 
 <https://bio.tools/buan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2269,
@@ -120233,14 +109191,12 @@ visualizer for bisulfite sequencing data.""" ;
 
 <https://bio.tools/bubastis> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0582" ;
-            sc:name "Ontology" ;
-            sc:sameAs "http://edamontology.org/data_0582" ] ;
+            sc:additionalType "http://edamontology.org/data_0582" ;
+            sc:name "Ontology" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2223" ;
-            sc:name "Ontology metadata" ;
-            sc:sameAs "http://edamontology.org/data_2223" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2223" ;
+            sc:name "Ontology metadata" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0203,
@@ -120265,7 +109221,7 @@ visualizer for bisulfite sequencing data.""" ;
     biotools:primaryContact "James Malone" .
 
 <https://bio.tools/bubble_gum> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0625,
@@ -120282,7 +109238,7 @@ visualizer for bisulfite sequencing data.""" ;
     biotools:primaryContact "Spinelli L" .
 
 <https://bio.tools/bubblegun> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0199,
@@ -120298,7 +109254,7 @@ visualizer for bisulfite sequencing data.""" ;
     biotools:primaryContact <https://orcid.org/0000-0002-6195-1884> .
 
 <https://bio.tools/bubbleparse> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0199,
@@ -120315,18 +109271,18 @@ visualizer for bisulfite sequencing data.""" ;
 
 <https://bio.tools/bubbletree> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ] ;
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_2921" ;
+            sc:name "Sequence variations" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3567" ;
-            sc:name "Reference sample report" ;
-            sc:sameAs "http://edamontology.org/data_3567" ],
+            sc:additionalType "http://edamontology.org/data_3567" ;
+            sc:encodingFormat "http://edamontology.org/format_3468" ;
+            sc:name "Reference sample report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1622" ;
-            sc:name "Disease report" ;
-            sc:sameAs "http://edamontology.org/data_1622" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1622" ;
+            sc:encodingFormat "http://edamontology.org/format_3468" ;
+            sc:name "Disease report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2640,
@@ -120348,7 +109304,7 @@ visualizer for bisulfite sequencing data.""" ;
         "Wei Zhu" .
 
 <https://bio.tools/buccaneer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0166,
         edam:topic_2269,
@@ -120364,7 +109320,7 @@ visualizer for bisulfite sequencing data.""" ;
     biotools:primaryContact "Kevin Cowtan" .
 
 <https://bio.tools/buddysuite> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0097,
@@ -120386,7 +109342,7 @@ visualizer for bisulfite sequencing data.""" ;
     biotools:primaryContact "Andreas D. Baxevanis" .
 
 <https://bio.tools/bufboss> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3068,
@@ -120402,10 +109358,10 @@ visualizer for bisulfite sequencing data.""" ;
 
 <https://bio.tools/bufet> a sc:SoftwareApplication ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2526" ;
-            sc:name "Text data" ;
-            sc:sameAs "http://edamontology.org/data_2526" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2526" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Text data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0091 ;
     sc:citation <https://doi.org/10.1186/s12859-017-1812-8>,
@@ -120422,7 +109378,7 @@ visualizer for bisulfite sequencing data.""" ;
     sc:url "https://github.com/diwis/BUFET/" .
 
 <https://bio.tools/bufferedmatrix> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3365 ;
@@ -120440,7 +109396,7 @@ visualizer for bisulfite sequencing data.""" ;
     biotools:primaryContact "Benjamin Milo Bolstad" .
 
 <https://bio.tools/bufferedmatrixmethods> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3518 ;
@@ -120458,7 +109414,7 @@ visualizer for bisulfite sequencing data.""" ;
     biotools:primaryContact "B. M. Bolstad" .
 
 <https://bio.tools/bugasbase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3170,
@@ -120479,7 +109435,7 @@ visualizer for bisulfite sequencing data.""" ;
     biotools:primaryContact "Adam A. Witney" .
 
 <https://bio.tools/bugbuilder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196 ;
     sc:citation <https://doi.org/10.1101/148783> ;
@@ -120494,7 +109450,7 @@ visualizer for bisulfite sequencing data.""" ;
     sc:url "http://www.imperial.ac.uk/bioinformatics-data-science-group/resources/software/bugbuilder/" .
 
 <https://bio.tools/bugseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3174,
         edam:topic_3301,
@@ -120505,16 +109461,36 @@ visualizer for bisulfite sequencing data.""" ;
     sc:name "BugSeq" ;
     sc:url "https://bugseq.com/free" .
 
+<https://bio.tools/bugsplit> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application",
+        "Workflow" ;
+    sc:applicationSubCategory edam:topic_0196,
+        edam:topic_0769,
+        edam:topic_3168,
+        edam:topic_3174 ;
+    sc:citation <https://doi.org/10.1101/2021.10.16.464647> ;
+    sc:description "Taxonomic binning of metagenomic assemblies enables genome-resolved metagenomics." ;
+    sc:featureList edam:operation_0310,
+        edam:operation_3460,
+        edam:operation_3482 ;
+    sc:isAccessibleForFree true ;
+    sc:name "BugSplit" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://bugseq.com/academic" .
+
 <https://bio.tools/buildh> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2850" ;
-            sc:name "Lipid structure" ;
-            sc:sameAs "http://edamontology.org/data_2850" ] ;
+            sc:additionalType "http://edamontology.org/data_2850" ;
+            sc:encodingFormat "http://edamontology.org/format_3866" ;
+            sc:name "Lipid structure" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2850" ;
-            sc:name "Lipid structure" ;
-            sc:sameAs "http://edamontology.org/data_2850" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2850" ;
+            sc:encodingFormat "http://edamontology.org/format_3866" ;
+            sc:name "Lipid structure" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0081 ;
@@ -120536,7 +109512,7 @@ visualizer for bisulfite sequencing data.""" ;
     biotools:primaryContact <http://orcid.org/0000-0001-7117-994X> .
 
 <https://bio.tools/bujnicki_lab_tools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0736 ;
@@ -120553,7 +109529,7 @@ visualizer for bisulfite sequencing data.""" ;
     sc:url "http://www.genesilico.pl/" .
 
 <https://bio.tools/bumhmm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0199,
@@ -120578,7 +109554,7 @@ visualizer for bisulfite sequencing data.""" ;
     biotools:primaryContact "Alina Selega" .
 
 <https://bio.tools/bumphunter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -120598,26 +109574,8 @@ visualizer for bisulfite sequencing data.""" ;
     sc:url "http://bioconductor.org/packages/release/bioc/html/bumphunter.html" ;
     biotools:primaryContact "Rafael A. Irizarry" .
 
-<https://bio.tools/burden_HAIs> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_2269,
-        edam:topic_3324 ;
-    sc:citation <https://doi.org/10.2807/1560-7917.ES.2019.24.46.1900135>,
-        "pmcid:PMC6864977",
-        "pubmed:31771703" ;
-    sc:description """Application of a new methodology and R package reveals a high burden of healthcare-associated infections (HAI) in Germany compared to the average in the European Union/European Economic Area, 2011 to 2012.
-
-Estimate the Burden of Healthcare-Associated Infections.
-
-Provides an approach which is based on the methodology of the Burden of Communicable Diseases in Europe (BCoDE) and can be used for large and small samples such as individual countries. The Burden of Healthcare-Associated Infections (BHAI) is estimated in disability-adjusted life years, number of infections as well as number of deaths per year. Results can be visualized with various plotting functions and exported into tables.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'HAI', 'burden healthcare-associated infections', 'HAIs DALYs', 'DALYs'""" ;
-    sc:featureList edam:operation_0337 ;
-    sc:license "GPL-3.0" ;
-    sc:name "burden HAIs" ;
-    sc:url "https://CRAN.R-project.org/package=BHAI" .
-
 <https://bio.tools/burrito> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0622,
@@ -120639,7 +109597,7 @@ Provides an approach which is based on the methodology of the Burden of Communic
     biotools:primaryContact "Elhanan Borenstein" .
 
 <https://bio.tools/bus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0622,
@@ -120659,7 +109617,7 @@ Provides an approach which is based on the methodology of the Burden of Communic
     biotools:primaryContact "Yuanhua Liu" .
 
 <https://bio.tools/bus-gan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3954 ;
     sc:citation <https://doi.org/10.1016/J.CMPB.2019.105275>,
         "pubmed:31978805" ;
@@ -120672,18 +109630,18 @@ Provides an approach which is based on the methodology of the Burden of Communic
 
 <https://bio.tools/busca> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3028" ;
-            sc:name "Taxonomy" ;
-            sc:sameAs "http://edamontology.org/data_3028" ],
+            sc:additionalType "http://edamontology.org/data_2974" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence (raw)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2974" ;
-            sc:name "Protein sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_2974" ] ;
+            sc:additionalType "http://edamontology.org/data_3028" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Taxonomy" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Protein features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0123,
         edam:topic_3307,
@@ -120709,22 +109667,32 @@ Provides an approach which is based on the methodology of the Burden of Communic
 
 <https://bio.tools/busco> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1234" ;
-            sc:name "Sequence set (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1234" ] ;
+            sc:additionalType "http://edamontology.org/data_1234" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence set (nucleic acid)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2955" ;
-            sc:name "Sequence report" ;
-            sc:sameAs "http://edamontology.org/data_2955" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2955" ;
+            sc:name "Sequence report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0196,
         edam:topic_0622,
         edam:topic_3308 ;
-    sc:citation <https://doi.org/10.1093/bioinformatics/btv351> ;
+    sc:citation <https://doi.org/10.1002/CPZ1.323>,
+        <https://doi.org/10.1093/bioinformatics/btv351>,
+        <https://doi.org/10.1093/molbev/msab199>,
+        <https://doi.org/10.1093/molbev/msx319>,
+        "pmcid:PMC5850278",
+        "pmcid:PMC8476166",
+        "pubmed:29220515",
+        "pubmed:34320186",
+        "pubmed:34936221" ;
     sc:description "Provides measures for quantitative assessment of genome assembly, gene set, and transcriptome completeness based on evolutionarily informed expectations of gene content from near-universal single-copy orthologs." ;
-    sc:featureList edam:operation_3180 ;
+    sc:featureList edam:operation_0525,
+        edam:operation_3180,
+        edam:operation_3216,
+        edam:operation_3258 ;
     sc:name "BUSCO" ;
     sc:operatingSystem "Linux" ;
     sc:provider "SIB Swiss Institute of Bioinformatics" ;
@@ -120733,7 +109701,7 @@ Provides an approach which is based on the methodology of the Burden of Communic
     sc:url "http://busco.ezlab.org/" .
 
 <https://bio.tools/busybee> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3174,
         edam:topic_3297,
@@ -120749,7 +109717,7 @@ Provides an approach which is based on the methodology of the Burden of Communic
     biotools:primaryContact "Prof. Dr. Andreas Keller" .
 
 <https://bio.tools/butler> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0769 ;
     sc:description "Collection of tools whose goal is to aid researchers in carrying out scientific analyses on a multitude of cloud computing platforms. It concerns itself with providing functionality in four broad areas: Provisioning; Configuration Management; Workflow Management; Operations Management." ;
@@ -120765,82 +109733,75 @@ Provides an approach which is based on the methodology of the Burden of Communic
 
 <https://bio.tools/bwa> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ],
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3210" ;
-            sc:name "Genome index" ;
-            sc:sameAs "http://edamontology.org/data_3210" ],
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ],
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:name "Sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ],
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ],
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ],
+            sc:additionalType "http://edamontology.org/data_3210" ;
+            sc:name "Genome index" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ],
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ],
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:name "Sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ],
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ],
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ],
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1332" ;
+            sc:name "Sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ],
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2012" ;
-            sc:name "Sequence coordinates" ;
-            sc:sameAs "http://edamontology.org/data_2012" ],
+            sc:additionalType "http://edamontology.org/data_2012" ;
+            sc:name "Sequence coordinates" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1916" ;
-            sc:name "Alignment" ;
-            sc:sameAs "http://edamontology.org/data_1916" ],
+            sc:additionalType "http://edamontology.org/data_1916" ;
+            sc:name "Alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
+            sc:name "Sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3210" ;
-            sc:name "Genome index" ;
-            sc:sameAs "http://edamontology.org/data_3210" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:name "Sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
+            sc:name "Sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3210" ;
+            sc:name "Genome index" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Workbench" ;
     sc:applicationSubCategory edam:topic_0102 ;
@@ -120875,10 +109836,10 @@ Provides an approach which is based on the methodology of the Burden of Communic
 
 <https://bio.tools/bwa-mem2> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1383" ;
-            sc:name "Nucleic acid sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_1383" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1383" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Nucleic acid sequence alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102 ;
     sc:citation <https://doi.org/10.1109/IPDPS.2019.00041> ;
@@ -120891,7 +109852,7 @@ Provides an approach which is based on the methodology of the Burden of Communic
     sc:url "https://github.com/bwa-mem2/bwa-mem2" .
 
 <https://bio.tools/bwa-meme> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3168,
@@ -120907,7 +109868,7 @@ Provides an approach which is based on the methodology of the Burden of Communic
     sc:url "https://github.com/kaist-ina/BWA-MEME/" .
 
 <https://bio.tools/bwa-pssm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0102 ;
@@ -120924,7 +109885,7 @@ Provides an approach which is based on the methodology of the Burden of Communic
     sc:url "http://bwa-pssm.binf.ku.dk/" .
 
 <https://bio.tools/bwa-sw> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btp698>,
@@ -120946,7 +109907,7 @@ Provides an approach which is based on the methodology of the Burden of Communic
     biotools:primaryContact "bwa team" .
 
 <https://bio.tools/bwasp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_0769,
@@ -120964,7 +109925,7 @@ Provides an approach which is based on the methodology of the Burden of Communic
     sc:url "https://BrendelGroup.org/SingularityHub/bwasp.sif" .
 
 <https://bio.tools/bwdat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3068,
         edam:topic_3077,
@@ -120977,7 +109938,7 @@ Provides an approach which is based on the methodology of the Burden of Communic
     sc:url "https://github.com/JoseDAssisCordeiro/BWDAT" .
 
 <https://bio.tools/bwimage> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3068,
         edam:topic_3382 ;
     sc:citation <https://doi.org/10.12688/F1000RESEARCH.19801.2> ;
@@ -120999,7 +109960,7 @@ A computational tool to describe patterns from black and white images""" ;
     sc:url "https://cran.r-project.org/web/packages/bwimage/index.html" .
 
 <https://bio.tools/bwm-transform> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0091 ;
     sc:description "Illustrates the Burrows-Wheeler Matrix (BWM) Transform." ;
@@ -121016,14 +109977,12 @@ A computational tool to describe patterns from black and white images""" ;
 
 <https://bio.tools/bwt-sw> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0857" ;
-            sc:name "Sequence search results" ;
-            sc:sameAs "http://edamontology.org/data_0857" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0857" ;
+            sc:name "Sequence search results" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0654,
@@ -121040,7 +109999,7 @@ A computational tool to describe patterns from black and white images""" ;
     biotools:primaryContact "GitHub Issues" .
 
 <https://bio.tools/bwtool> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3168,
         edam:topic_3169,
@@ -121053,7 +110012,7 @@ A computational tool to describe patterns from black and white images""" ;
     sc:url "https://github.com/CRG-Barcelona/bwtool/wiki" .
 
 <https://bio.tools/bx-python> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Script" ;
     sc:applicationSubCategory edam:topic_0080 ;
@@ -121069,7 +110028,7 @@ A computational tool to describe patterns from black and white images""" ;
     biotools:primaryContact "Taylor Lab at Johns Hopkins University" .
 
 <https://bio.tools/byase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -121088,7 +110047,7 @@ A computational tool to describe patterns from black and white images""" ;
     sc:url "https://github.com/ncjllld/byase" .
 
 <https://bio.tools/bykdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -121108,7 +110067,7 @@ A computational tool to describe patterns from black and white images""" ;
     biotools:primaryContact "Contact form" .
 
 <https://bio.tools/bypassr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654,
@@ -121125,7 +110084,7 @@ A computational tool to describe patterns from black and white images""" ;
     biotools:primaryContact "Ligia M. Mateiu MD PhD" .
 
 <https://bio.tools/bystro> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0218,
@@ -121143,7 +110102,7 @@ A computational tool to describe patterns from black and white images""" ;
     biotools:primaryContact "Suppoer" .
 
 <https://bio.tools/bz-rates> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_2269,
@@ -121160,7 +110119,7 @@ A computational tool to describe patterns from black and white images""" ;
     biotools:primaryContact "Alexandre Gillet" .
 
 <https://bio.tools/bzscan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0654,
@@ -121177,7 +110136,7 @@ A computational tool to describe patterns from black and white images""" ;
     sc:url "http://tagc.univ-mrs.fr/welcome/spip.php?rubrique7" .
 
 <https://bio.tools/c-big> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3053,
@@ -121194,7 +110153,7 @@ A computational tool to describe patterns from black and white images""" ;
     biotools:primaryContact <http://orcid.org/0000-0003-2018-8760> .
 
 <https://bio.tools/c-csn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0203,
@@ -121211,7 +110170,7 @@ A computational tool to describe patterns from black and white images""" ;
         <https://orcid.org/0000-0002-3960-0068> .
 
 <https://bio.tools/c-hmm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0160,
@@ -121227,7 +110186,7 @@ A computational tool to describe patterns from black and white images""" ;
     biotools:primaryContact "Swati Kaushik, PhD" .
 
 <https://bio.tools/c-rnncrispr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3168,
         edam:topic_3295,
         edam:topic_3474 ;
@@ -121242,7 +110201,7 @@ A computational tool to describe patterns from black and white images""" ;
     sc:url "https://github.com/Peppags/C-RNNCrispr" .
 
 <https://bio.tools/c-state> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0092,
@@ -121262,8 +110221,26 @@ A computational tool to describe patterns from black and white images""" ;
         "Rakesh K Mishra",
         "Surabhi Srivastava" .
 
+<https://bio.tools/c-time> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0749,
+        edam:topic_3068,
+        edam:topic_3303 ;
+    sc:citation <https://doi.org/10.1101/2022.01.09.22268977> ;
+    sc:description "A System for Predicting Mortality of Patients with COVID-19 Pneumonia at the Time They Require Mechanical Ventilation." ;
+    sc:featureList edam:operation_0252,
+        edam:operation_3503,
+        edam:operation_3659 ;
+    sc:isAccessibleForFree true ;
+    sc:name "C-TIME" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://phoenixmed.arizona.edu/ctime" .
+
 <https://bio.tools/c2analyzer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_3307,
@@ -121276,24 +110253,8 @@ A computational tool to describe patterns from black and white images""" ;
     sc:url "http://www.bioinformatics.org/c2analyzer/" ;
     biotools:primaryContact "Arindam Deb" .
 
-<https://bio.tools/cAMP_PKA> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0602,
-        edam:topic_3068 ;
-    sc:citation <https://doi.org/10.1016/J.BPJ.2019.10.003>,
-        "pubmed:31668749" ;
-    sc:description """Computational Modeling Reveals Frequency Modulation of Calcium-cAMP/PKA Pathway in Dendritic Spines.
-
-Dendritic spines are the primary excitatory postsynaptic sites that act as subcompartments of signaling. Ca2+ is often the first and most rapid signal in spines. Downstream of calcium, the cyclic adenosine monophosphate (cAMP) protein kinase A (PKA) pathway plays a critical role in the regulation of spine formation, morphological modifications, and ultimately, learning and memory. Although the dynamics of calcium are reasonably well-studied, calcium-induced cAMP PKA dynamics, particularly with respect to frequency modulation, are not fully explored. In this study, we present a well-mixed model for the dynamics of calcium-induced cAMP PKA dynamics in dendritic spines. The model is constrained using experimental observations in the literature.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'dendritic spines', 'spines', 'well-mixed', 'calcium-induced'""" ;
-    sc:featureList edam:operation_3439,
-        edam:operation_3450,
-        edam:operation_3891 ;
-    sc:name "cAMP PKA" ;
-    sc:url "https://github.com/donya26/cAMP-PKA-temporal.git" .
-
 <https://bio.tools/cAb-Rep> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0219,
         edam:topic_2830 ;
@@ -121305,7 +110266,7 @@ Dendritic spines are the primary excitatory postsynaptic sites that act as subco
     sc:url "https://cab-rep.c2b2.columbia.edu" .
 
 <https://bio.tools/cBioportal> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Bioinformatics portal" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0625,
@@ -121323,7 +110284,7 @@ Dendritic spines are the primary excitatory postsynaptic sites that act as subco
     sc:url "http://www.cBioportal.org/index.do" .
 
 <https://bio.tools/cLoops> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3169 ;
@@ -121337,7 +110298,7 @@ Dendritic spines are the primary excitatory postsynaptic sites that act as subco
     sc:url "https://github.com/YaqiangCao/cLoops" .
 
 <https://bio.tools/cNMTF> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0625,
@@ -121359,7 +110320,7 @@ Dendritic spines are the primary excitatory postsynaptic sites that act as subco
     biotools:primaryContact "Luis G. Leal" .
 
 <https://bio.tools/cRacle> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0780,
         edam:topic_3050 ;
@@ -121376,7 +110337,7 @@ Dendritic spines are the primary excitatory postsynaptic sites that act as subco
     biotools:primaryContact "R. Harbert" .
 
 <https://bio.tools/cRegulome> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_0749,
@@ -121397,7 +110358,7 @@ Dendritic spines are the primary excitatory postsynaptic sites that act as subco
     sc:url "https://cran.r-project.org/package=cRegulome" .
 
 <https://bio.tools/ca-net> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_3384,
@@ -121413,7 +110374,7 @@ Dendritic spines are the primary excitatory postsynaptic sites that act as subco
     sc:url "https://github.com/HiLab-git/CA-Net" .
 
 <https://bio.tools/cab-align> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0130,
@@ -121428,7 +110389,7 @@ Dendritic spines are the primary excitatory postsynaptic sites that act as subco
     biotools:primaryContact "Mayuko Takeda-Shitaka" .
 
 <https://bio.tools/cabean> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0749,
         edam:topic_3303,
@@ -121443,7 +110404,7 @@ Dendritic spines are the primary excitatory postsynaptic sites that act as subco
     sc:url "https://satoss.uni.lu/software/CABEAN/" .
 
 <https://bio.tools/cabernet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2259,
@@ -121461,8 +110422,32 @@ Dendritic spines are the primary excitatory postsynaptic sites that act as subco
     sc:url "http://bimib.disco.unimib.it/index.php/CABERNET" ;
     biotools:primaryContact "marco antoniotti" .
 
+<https://bio.tools/cabgen> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0091,
+        edam:topic_0196,
+        edam:topic_0199,
+        edam:topic_0769,
+        edam:topic_3168 ;
+    sc:citation <https://doi.org/10.3389/FMICB.2022.893474>,
+        "pmcid:PMC9196194",
+        "pubmed:35711759" ;
+    sc:description "A Web Application for the Bioinformatic Analysis of Bacterial Genomes." ;
+    sc:featureList edam:operation_0524,
+        edam:operation_0525,
+        edam:operation_3227,
+        edam:operation_3840 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "CABGen" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://aureus.procc.fiocruz.br/index.html" .
+
 <https://bio.tools/cabnet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_3382,
         edam:topic_3474 ;
@@ -121475,7 +110460,7 @@ Dendritic spines are the primary excitatory postsynaptic sites that act as subco
     sc:url "https://github.com/he2016012996/CABnet" .
 
 <https://bio.tools/cabog> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0196 ;
     sc:citation "pubmed:18952627" ;
@@ -121490,18 +110475,16 @@ Dendritic spines are the primary excitatory postsynaptic sites that act as subco
 
 <https://bio.tools/cabri> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2597" ;
-            sc:name "CABRI catalogue name" ;
-            sc:sameAs "http://edamontology.org/data_2597" ],
+            sc:additionalType "http://edamontology.org/data_2380" ;
+            sc:name "CABRI accession" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2380" ;
-            sc:name "CABRI accession" ;
-            sc:sameAs "http://edamontology.org/data_2380" ] ;
+            sc:additionalType "http://edamontology.org/data_2597" ;
+            sc:name "CABRI catalogue name" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0963" ;
-            sc:name "Cell line report" ;
-            sc:sameAs "http://edamontology.org/data_0963" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0963" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Cell line report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_3301,
         edam:topic_3339,
@@ -121530,7 +110513,7 @@ Dendritic spines are the primary excitatory postsynaptic sites that act as subco
     biotools:primaryContact "Paolo Romano" .
 
 <https://bio.tools/cabs-flex> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_2275,
@@ -121548,7 +110531,7 @@ Dendritic spines are the primary excitatory postsynaptic sites that act as subco
         "Laboratory of Theory of Biopolymers" .
 
 <https://bio.tools/cabs-fold> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -121572,7 +110555,7 @@ Dendritic spines are the primary excitatory postsynaptic sites that act as subco
         "Laboratory of Theory of Biopolymers" .
 
 <https://bio.tools/cac_score> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0153,
         edam:topic_3305,
@@ -121593,10 +110576,9 @@ Dendritic spines are the primary excitatory postsynaptic sites that act as subco
 
 <https://bio.tools/cachedas> a sc:SoftwareApplication ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -121627,10 +110609,9 @@ Dendritic spines are the primary excitatory postsynaptic sites that act as subco
 
 <https://bio.tools/cachedbfetch> a sc:SoftwareApplication ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -121661,10 +110642,9 @@ Dendritic spines are the primary excitatory postsynaptic sites that act as subco
 
 <https://bio.tools/cacheebeyesearch> a sc:SoftwareApplication ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -121695,10 +110675,9 @@ Dendritic spines are the primary excitatory postsynaptic sites that act as subco
 
 <https://bio.tools/cacheensembl> a sc:SoftwareApplication ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -121727,8 +110706,24 @@ Dendritic spines are the primary excitatory postsynaptic sites that act as subco
     sc:softwareVersion "r6" ;
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/cacheensembl.html" .
 
+<https://bio.tools/cachet-cadb> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Script" ;
+    sc:applicationSubCategory edam:topic_3068,
+        edam:topic_3489 ;
+    sc:citation <https://doi.org/10.3389/FCVM.2022.893090>,
+        "pmcid:PMC9283915",
+        "pubmed:35845039" ;
+    sc:description "CACHET-CADB is 259 days long contextualised single-channel ECG arrhythmia database from 24 patients recording under a free-living ambulatory setting" ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "CACHET-CADB" ;
+    sc:operatingSystem "Windows" ;
+    sc:url "https://github.com/cph-cachet/cachet-ecg-db" .
+
 <https://bio.tools/cactus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0084,
@@ -121759,7 +110754,7 @@ Dendritic spines are the primary excitatory postsynaptic sites that act as subco
         "David Haussler" .
 
 <https://bio.tools/cactus-tumor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0625,
@@ -121779,8 +110774,32 @@ Dendritic spines are the primary excitatory postsynaptic sites that act as subco
     sc:url "https://github.com/LUMC/CACTUS" ;
     biotools:primaryContact "Ewa Szczurek" .
 
+<https://bio.tools/cad> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_2640,
+        edam:topic_2830,
+        edam:topic_3379,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.3389/FBIOE.2022.819583>,
+        "pmcid:PMC9133807",
+        "pubmed:35646870" ;
+    sc:description "Cancer Antigens Database (CAD) designed to facilitate users to perform a complete exploration of cancer antigens online." ;
+    sc:featureList edam:operation_0252,
+        edam:operation_0416,
+        edam:operation_3695 ;
+    sc:license "Not licensed" ;
+    sc:name "CAD" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <http://cad.bio-it.cn/#/FAQ> ;
+    sc:url "http://cad.bio-it.cn/" .
+
 <https://bio.tools/cad-score> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_2275,
@@ -121800,7 +110819,7 @@ Dendritic spines are the primary excitatory postsynaptic sites that act as subco
     sc:url "http://bioinformatics.lt/software/cad-score" .
 
 <https://bio.tools/cada> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0625,
@@ -121824,24 +110843,8 @@ Web site created using create-react-app.
     sc:url "https://cada.gene-talk.de/webservice/" ;
     biotools:primaryContact <https://orcid.org/0000-0002-3194-8625> .
 
-<https://bio.tools/cadastral> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0102,
-        edam:topic_3372,
-        edam:topic_3382 ;
-    sc:citation <https://doi.org/10.7287/PEERJ.PREPRINTS.2222V3> ;
-    sc:description """An open-source based toolchain for the georeferencing of old cadastral maps.
-
-More and more historical data are available on the web. In France, old cadastral maps are regularly published by the “départements”. Such material is relevant to various applications (on-the-field search of specific objects such as old boundary stakes, historical studies of demography, human activities, land cover…). The GeF laboratory is working on the development of a complete methodological toolchain to vectorise, correct and analyse cadastral parcels and their evolution, using open source software and programming language only (QGIS, GDAL, Python). This article details the use of a part of this toolchain - georeferencing old cadastral data - on parcels located near the Loir river, in two villages of southern Sarthe: Vaas and Aubigné-Racan.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'QGIS', 'GDAL', 'toolchain', 'georeferencing'""" ;
-    sc:featureList edam:operation_2429 ;
-    sc:name "cadastral" ;
-    sc:url "https://doi.org/10.7287/PEERJ.PREPRINTS.2222V3" .
-
 <https://bio.tools/cadbure> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0099,
@@ -121856,7 +110859,7 @@ More and more historical data are available on the web. In France, old cadastral
     biotools:primaryContact "Praveen K. Raj Kumar" .
 
 <https://bio.tools/cadd_phred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0622,
@@ -121865,8 +110868,14 @@ More and more historical data are available on the web. In France, old cadastral
         edam:topic_3325,
         edam:topic_3574 ;
     sc:citation <https://doi.org/10.1038/ng.2892>,
+        <https://doi.org/10.1093/nar/gky1016>,
+        <https://doi.org/10.1186/s13073-021-00835-9>,
         "pmcid:PMC3992975",
-        "pubmed:24487276" ;
+        "pmcid:PMC6323892",
+        "pmcid:PMC7901104",
+        "pubmed:24487276",
+        "pubmed:30371827",
+        "pubmed:33618777" ;
     sc:description "Combined Annotation Dependent Depletion (CADD) - tool for scoring the deleteriousness of single nucleotide variants as well as insertion/deletions variants in the human genome." ;
     sc:featureList edam:operation_2238,
         edam:operation_2436,
@@ -121881,8 +110890,33 @@ More and more historical data are available on the web. In France, old cadastral
     sc:url "http://cadd.gs.washington.edu/" ;
     biotools:primaryContact "CADD support" .
 
+<https://bio.tools/caddie> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library",
+        "Web application",
+        "Workflow" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_2640,
+        edam:topic_3336,
+        edam:topic_3373,
+        edam:topic_3577 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAC384>,
+        "pmcid:PMC9252786",
+        "pubmed:35580047" ;
+    sc:description "Cancer Driver Drug Interaction Explorer (CADDIE) It provides an interface for a variety of CADDIEs functionalities, giving the user the possibility to execute tasks on CADDIE programmatically without using the website." ;
+    sc:featureList edam:operation_3925,
+        edam:operation_4009 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "CADDIE" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://exbio.wzw.tum.de/caddie/documentation> ;
+    sc:url "https://exbio.wzw.tum.de/caddie/" .
+
 <https://bio.tools/cadgene> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0634,
@@ -121904,7 +110938,7 @@ More and more historical data are available on the web. In France, old cadastral
     biotools:primaryContact "Qing Kenneth Wang" .
 
 <https://bio.tools/cadnano> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0654,
@@ -121920,7 +110954,7 @@ More and more historical data are available on the web. In France, old cadastral
     biotools:primaryContact "Shawn Douglas" .
 
 <https://bio.tools/cadre_genomes_browser> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0622,
@@ -121940,8 +110974,31 @@ More and more historical data are available on the web. In France, old cadastral
     sc:url "http://www.cadre-genomes.org.uk/index.html" ;
     biotools:primaryContact "Jane Mabey Gilsenan" .
 
+<https://bio.tools/cadrressc> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0208,
+        edam:topic_2640,
+        edam:topic_3170,
+        edam:topic_3308,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1186/S13073-021-01000-Y>,
+        "pmcid:PMC8680165",
+        "pubmed:34915921" ;
+    sc:description "Predicting heterogeneity in clone-specific therapeutic vulnerabilities using single-cell transcriptomic signatures." ;
+    sc:featureList edam:operation_3436,
+        edam:operation_3891,
+        edam:operation_4009 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "CaDRReS-Sc" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/CSB5/CaDRReS-Sc" .
+
 <https://bio.tools/caen> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3170,
@@ -121958,7 +111015,7 @@ More and more historical data are available on the web. In France, old cadastral
     sc:url "https://bioconductor.org/packages/devel/bioc/html/CAEN.html" .
 
 <https://bio.tools/caentropy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_3315 ;
@@ -121973,7 +111030,7 @@ More and more historical data are available on the web. In France, old cadastral
     biotools:primaryContact "Ehsan Tahami" .
 
 <https://bio.tools/cafa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0097,
@@ -121990,7 +111047,7 @@ More and more historical data are available on the web. In France, old cadastral
     sc:url "https://simtk.org/home/cafa" .
 
 <https://bio.tools/cafe> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3053,
@@ -122010,7 +111067,7 @@ More and more historical data are available on the web. In France, old cadastral
     biotools:primaryContact "Sander Bollen" .
 
 <https://bio.tools/cafe-r> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0091,
@@ -122030,8 +111087,30 @@ The R package part of CAFE can be installed in R using the devtools package and:
     sc:name "CAFE-R" ;
     sc:url "http://microbiology.se/software/cafe/" .
 
+<https://bio.tools/cafe5> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0084,
+        edam:topic_0623 ;
+    sc:citation <https://doi.org/10.1093/bioinformatics/btaa1022>,
+        <https://doi.org/10.1093/bioinformatics/btl097>,
+        <https://doi.org/10.1101/gr.3567505>,
+        "pmcid:PMC1182228",
+        "pubmed:16077014",
+        "pubmed:16543274",
+        "pubmed:33325502" ;
+    sc:description "The purpose of CAFE is to analyze changes in gene family size in a way that accounts for phylogenetic history and provides a statistical foundation for evolutionary inferences. The program uses a birth and death process to model gene gain and loss across a user-specified phylogenetic tree. The distribution of family sizes generated under this model can provide a basis for assessing the significance of the observed family size differences among taxa." ;
+    sc:featureList edam:operation_3947 ;
+    sc:isAccessibleForFree true ;
+    sc:license "ECL-2.0" ;
+    sc:name "cafe5" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/hahnlab/CAFE5" .
+
 <https://bio.tools/cafe_sequence_analysis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0196,
@@ -122053,8 +111132,52 @@ The R package part of CAFE can be installed in R using the devtools package and:
     biotools:primaryContact "Prof. Fengzhu Sun",
         "Yang Lu" .
 
+<https://bio.tools/cafeh> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_0203,
+        edam:topic_0625,
+        edam:topic_0634,
+        edam:topic_3517 ;
+    sc:citation <https://doi.org/10.1016/J.AJHG.2022.01.002>,
+        "pmcid:PMC8874223",
+        "pubmed:35085493" ;
+    sc:description "CAFEH is a method that performs finemapping and colocalization jointly over multiple phenotypes. CAFEH can be run with 10s of phenotypes and 1000s of variants in a few minutes." ;
+    sc:featureList edam:operation_0282,
+        edam:operation_0314,
+        edam:operation_3226,
+        edam:operation_3232,
+        edam:operation_3791 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "CAFEH" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/karltayeb/cafeh" .
+
+<https://bio.tools/cafes> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3299,
+        edam:topic_3314,
+        edam:topic_3520,
+        edam:topic_3524 ;
+    sc:citation <https://doi.org/10.1021/ACS.ANALCHEM.1C03925>,
+        "pubmed:34788021" ;
+    sc:description "Client-based Application for Fast Electrophoresis Simulation (CAFES) a client-side web-based simulator for complex electrophoresis phenomena, including isotachophoresis." ;
+    sc:featureList edam:operation_2426 ;
+    sc:isAccessibleForFree true ;
+    sc:name "CAFES" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://microfluidics.stanford.edu/download/cafes_tutorial.pdf> ;
+    sc:url "https://microfluidics.stanford.edu/cafes" .
+
 <https://bio.tools/cafew> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3170,
         edam:topic_3512 ;
@@ -122069,7 +111192,7 @@ The R package part of CAFE can be installed in R using the devtools package and:
     sc:url "https://github.com/LiRuiyi-raptor/CaFew_Project" .
 
 <https://bio.tools/caffsim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0780,
         edam:topic_3300,
         edam:topic_3375 ;
@@ -122085,7 +111208,7 @@ The R package part of CAFE can be installed in R using the devtools package and:
     sc:url "https://asancpt.github.io/caffsim" .
 
 <https://bio.tools/caftools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0654 ;
@@ -122100,7 +111223,7 @@ The R package part of CAFE can be installed in R using the devtools package and:
     sc:url "http://www.sanger.ac.uk/science/tools/caf" .
 
 <https://bio.tools/cagedb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0634,
@@ -122117,7 +111240,7 @@ The R package part of CAFE can be installed in R using the devtools package and:
     biotools:primaryContact "Per Uhlén" .
 
 <https://bio.tools/cagefightr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0204,
@@ -122141,7 +111264,7 @@ The R package part of CAFE can be installed in R using the devtools package and:
     biotools:primaryContact "Malte Thodberg" .
 
 <https://bio.tools/cageminer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -122162,7 +111285,7 @@ The R package part of CAFE can be installed in R using the devtools package and:
     sc:url "http://bioconductor.org/packages/cageminer" .
 
 <https://bio.tools/cager> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -122184,7 +111307,7 @@ The R package part of CAFE can be installed in R using the devtools package and:
     biotools:primaryContact <http://orcid.org/0000-0003-4191-3714> .
 
 <https://bio.tools/cagexplorer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3053,
@@ -122201,18 +111324,15 @@ The R package part of CAFE can be installed in R using the devtools package and:
 
 <https://bio.tools/cai> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1597" ;
-            sc:name "Codon usage table" ;
-            sc:sameAs "http://edamontology.org/data_1597" ],
+            sc:additionalType "http://edamontology.org/data_1597" ;
+            sc:name "Codon usage table" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2887" ;
-            sc:name "Nucleic acid sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2887" ] ;
+            sc:additionalType "http://edamontology.org/data_2887" ;
+            sc:name "Nucleic acid sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2865" ;
-            sc:name "Codon usage bias" ;
-            sc:sameAs "http://edamontology.org/data_2865" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2865" ;
+            sc:name "Codon usage bias" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -122242,7 +111362,7 @@ The R package part of CAFE can be installed in R using the devtools package and:
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/cai.html" .
 
 <https://bio.tools/caic> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3293,
@@ -122256,8 +111376,51 @@ The R package part of CAFE can be installed in R using the devtools package and:
     sc:url "http://www.bio.ic.ac.uk/evolve/software/caic/index.html" ;
     biotools:primaryContact "Andy Purvis" .
 
+<https://bio.tools/cainet> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workbench" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0602,
+        edam:topic_0821,
+        edam:topic_3474,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.1186/S12859-021-04541-6>,
+        "pmcid:PMC8729106",
+        "pubmed:34986805" ;
+    sc:description "Stochastic simulation tool for gene regulatory networks" ;
+    sc:featureList edam:operation_2426,
+        edam:operation_3927,
+        edam:operation_3928 ;
+    sc:isAccessibleForFree true ;
+    sc:license "AGPL-3.0" ;
+    sc:name "CaiNet" ;
+    sc:url "https://gitlab.com/GebhardtLab/CaiNet" .
+
+<https://bio.tools/caisc> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0625,
+        edam:topic_0769,
+        edam:topic_2885,
+        edam:topic_3170,
+        edam:topic_3958 ;
+    sc:citation <https://doi.org/10.1186/S12859-022-04625-X>,
+        "pmcid:PMC8939069",
+        "pubmed:35313800" ;
+    sc:description "A software to integrate copy number variations and single nucleotide mutations for genetic heterogeneity profiling and subclone detection by single-cell RNA sequencing-" ;
+    sc:featureList edam:operation_3196,
+        edam:operation_3227,
+        edam:operation_3961 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "CAISC" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/lizamathews/CAISC" .
+
 <https://bio.tools/cake> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0654 ;
@@ -122271,7 +111434,7 @@ The R package part of CAFE can be installed in R using the devtools package and:
     sc:url "http://cakesomatic.sourceforge.net/" .
 
 <https://bio.tools/calango> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Workbench" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -122293,7 +111456,7 @@ The R package part of CAFE can be installed in R using the devtools package and:
     sc:url "https://fcampelo.github.io/CALANGO/" .
 
 <https://bio.tools/calcen> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -122313,14 +111476,14 @@ The R package part of CAFE can be installed in R using the devtools package and:
 
 <https://bio.tools/calchas> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2526" ;
-            sc:name "Text data" ;
-            sc:sameAs "http://edamontology.org/data_2526" ] ;
+            sc:additionalType "http://edamontology.org/data_2526" ;
+            sc:encodingFormat "http://edamontology.org/format_1964" ;
+            sc:name "Text data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0977" ;
-            sc:name "Tool identifier" ;
-            sc:sameAs "http://edamontology.org/data_0977" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0977" ;
+            sc:encodingFormat "http://edamontology.org/format_1964" ;
+            sc:name "Tool identifier" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0091,
@@ -122346,7 +111509,7 @@ The R package part of CAFE can be installed in R using the devtools package and:
     biotools:primaryContact "Lefteris Koumakis" .
 
 <https://bio.tools/calcifications-attenuation-left-coronary-artery-ct-images> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3344,
@@ -122365,7 +111528,7 @@ The R package part of CAFE can be installed in R using the devtools package and:
     biotools:primaryContact "Mithun Kumar PK." .
 
 <https://bio.tools/calcium-signals-parametrizer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3304,
         edam:topic_3318,
@@ -122382,7 +111545,7 @@ The R package part of CAFE can be installed in R using the devtools package and:
     biotools:primaryContact "Laurent MacKay" .
 
 <https://bio.tools/calculate-cycle-numbers-genetic-2-break-distance-problem> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3053 ;
     sc:description "Given two genomes, find the shortest sequence of 2-Breaks transforming one genome into another" ;
@@ -122396,7 +111559,7 @@ The R package part of CAFE can be installed in R using the devtools package and:
     biotools:primaryContact "Shuang Wang" .
 
 <https://bio.tools/calculation-ct-mtf-nps> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3306,
         edam:topic_3344,
@@ -122414,8 +111577,39 @@ The R package part of CAFE can be installed in R using the devtools package and:
     sc:url "https://www.mathworks.com/matlabcentral/fileexchange/41401-calculation-of-ct-mtf-and-nps-using-the-acr-accreditation-phantom" ;
     biotools:primaryContact "Saul N. Friedman" .
 
+<https://bio.tools/calcus> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workflow" ;
+    sc:applicationSubCategory edam:topic_0749,
+        edam:topic_3314 ;
+    sc:citation <https://doi.org/10.1021/ACS.JCIM.1C01502>,
+        "pubmed:35226807" ;
+    sc:description "CalcUS is a quantum chemistry plateform. It strives for simplicity, clarity and efficiency. It brings all the necessary tools to perform quantum chemistry in a user-friendly web interface." ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "CalcUS" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://calcus.readthedocs.io/en/latest/> ;
+    sc:url "https://github.com/cyllab/CalcUS" .
+
+<https://bio.tools/caldera> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0621,
+        edam:topic_0625,
+        edam:topic_2885,
+        edam:topic_3517 ;
+    sc:citation <https://doi.org/10.1101/2021.11.05.467462> ;
+    sc:description "A tool for finding all significant de Bruijn subgraphs for bacterial GWAS." ;
+    sc:featureList edam:operation_0524 ;
+    sc:isAccessibleForFree true ;
+    sc:name "CALDERA" ;
+    sc:url "https://github.com/HectorRDB/Caldera_Recomb" .
+
 <https://bio.tools/calecpred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0623 ;
@@ -122428,7 +111622,7 @@ The R package part of CAFE can be installed in R using the devtools package and:
     biotools:primaryContact "Hao Lin" .
 
 <https://bio.tools/caleydo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -122445,14 +111639,14 @@ The R package part of CAFE can be installed in R using the devtools package and:
 
 <https://bio.tools/calfitter> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3108" ;
-            sc:name "Experimental measurement" ;
-            sc:sameAs "http://edamontology.org/data_3108" ] ;
+            sc:additionalType "http://edamontology.org/data_3108" ;
+            sc:encodingFormat "http://edamontology.org/format_3620" ;
+            sc:name "Experimental measurement" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0950" ;
-            sc:name "Mathematical model" ;
-            sc:sameAs "http://edamontology.org/data_0950" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0950" ;
+            sc:encodingFormat "http://edamontology.org/format_3620" ;
+            sc:name "Mathematical model" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0121,
@@ -122461,7 +111655,8 @@ The R package part of CAFE can be installed in R using the devtools package and:
     sc:author <https://orcid.org/0000-0003-3139-3700>,
         <https://orcid.org/0000-0003-3659-4819>,
         "Sava Nedeljkovic" ;
-    sc:citation <https://doi.org/10.1093/nar/gky358> ;
+    sc:citation <https://doi.org/10.1093/nar/gkac378>,
+        <https://doi.org/10.1093/nar/gky358> ;
     sc:contributor <https://orcid.org/0000-0001-9358-4081>,
         <https://orcid.org/0000-0002-6803-0340>,
         <https://orcid.org/0000-0002-7848-8216>,
@@ -122490,12 +111685,12 @@ The R package part of CAFE can be installed in R using the devtools package and:
     sc:softwareHelp <https://loschmidt.chemi.muni.cz/calfitter/?action=example&>,
         <https://loschmidt.chemi.muni.cz/calfitter/?action=help&>,
         <https://loschmidt.chemi.muni.cz/calfitter/?action=terms&> ;
-    sc:softwareVersion "1.3" ;
+    sc:softwareVersion "2.0" ;
     sc:url "https://loschmidt.chemi.muni.cz/calfitter/" ;
     biotools:primaryContact "CalFitter team" .
 
 <https://bio.tools/calib> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -122515,18 +111710,18 @@ The R package part of CAFE can be installed in R using the devtools package and:
 
 <https://bio.tools/calibracurve> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2526" ;
-            sc:name "Text data" ;
-            sc:sameAs "http://edamontology.org/data_2526" ] ;
+            sc:additionalType "http://edamontology.org/data_2526" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Text data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ],
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3591" ;
+            sc:name "Image" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2526" ;
-            sc:name "Text data" ;
-            sc:sameAs "http://edamontology.org/data_2526" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2526" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Text data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Plug-in",
         "Script",
@@ -122553,7 +111748,7 @@ The R package part of CAFE can be installed in R using the devtools package and:
     biotools:primaryContact "PD Dr. Martin Eisenacher" .
 
 <https://bio.tools/califorest> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0605,
         edam:topic_3577 ;
@@ -122573,7 +111768,7 @@ The R package part of CAFE can be installed in R using the devtools package and:
     sc:url "https://github.com/yubin-park/califorest" .
 
 <https://bio.tools/calis-p> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3301,
         edam:topic_3520 ;
@@ -122590,7 +111785,7 @@ The R package part of CAFE can be installed in R using the devtools package and:
     biotools:primaryContact "Manuel Kleiner" .
 
 <https://bio.tools/calista> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Suite" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -122609,7 +111804,7 @@ The R package part of CAFE can be installed in R using the devtools package and:
     sc:url "https://www.cabselab.com/calista" .
 
 <https://bio.tools/callr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_2229,
@@ -122631,7 +111826,7 @@ The R package part of CAFE can be installed in R using the devtools package and:
     sc:url "https://github.com/MathSZhang/CALLR" .
 
 <https://bio.tools/calmate> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2885,
         edam:topic_3518 ;
@@ -122647,8 +111842,32 @@ The R package part of CAFE can be installed in R using the devtools package and:
     sc:softwareVersion "0.12.0" ;
     sc:url "http://cran.r-project.org/web/packages/calmate/index.html" .
 
+<https://bio.tools/calmbelt> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application",
+        "Workbench" ;
+    sc:applicationSubCategory edam:topic_0605,
+        edam:topic_0622,
+        edam:topic_3305,
+        edam:topic_3324,
+        edam:topic_3673 ;
+    sc:citation <https://doi.org/10.3389/FMED.2021.790662>,
+        "pmcid:PMC8712659",
+        "pubmed:34970567" ;
+    sc:description "CalmBelt, an integrated framework for on-site whole genome characterization and outbreak tracking." ;
+    sc:featureList edam:operation_2938,
+        edam:operation_3227,
+        edam:operation_3432 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "CalmBelt" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://calmbelt-demo.mtms.dev" .
+
 <https://bio.tools/calmorph> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3383 ;
@@ -122664,7 +111883,7 @@ The R package part of CAFE can be installed in R using the devtools package and:
     biotools:primaryContact "Yoshikazu Ohya" .
 
 <https://bio.tools/calr-etdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3175,
@@ -122680,7 +111899,7 @@ The R package part of CAFE can be installed in R using the devtools package and:
     biotools:primaryContact <https://orcid.org/0000-0001-7112-5626> .
 
 <https://bio.tools/caltrack> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0202,
         edam:topic_0625,
@@ -122695,7 +111914,7 @@ The R package part of CAFE can be installed in R using the devtools package and:
         <https://orcid.org/0000-0003-4671-2030> .
 
 <https://bio.tools/camamed> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3170,
@@ -122718,8 +111937,53 @@ The R package part of CAFE can be installed in R using the devtools package and:
     sc:name "CAMAMED" ;
     sc:url "https://github.com/mhnb/camamed" .
 
+<https://bio.tools/camap> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0749,
+        edam:topic_3308,
+        edam:topic_3474,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.1371/JOURNAL.PCBI.1009482>,
+        "pmcid:PMC8577786",
+        "pubmed:34679099" ;
+    sc:description "Codon Arrangement MAP Predictor, predicting MHC-I Associated Peptides presentation form mRNA" ;
+    sc:featureList edam:operation_0284,
+        edam:operation_2429,
+        edam:operation_2962 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "CAMAP" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/tariqdaouda/CAMAP" .
+
+<https://bio.tools/camcops> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Desktop application" ;
+    sc:applicationSubCategory edam:topic_3063,
+        edam:topic_3304,
+        edam:topic_3400,
+        edam:topic_3419,
+        edam:topic_3421 ;
+    sc:citation <https://doi.org/10.3389/FPSYT.2021.578298>,
+        "pmcid:PMC8635805",
+        "pubmed:34867492" ;
+    sc:description "Cambridge Cognitive and Psychiatric Test Kit (CamCOPS) an open-source application for capturing information relevant for cognitive and psychiatric assessment, on tablets, laptops, and desktops. It offers simple questionnaires and more complex tasks, and sends its data securely to your server." ;
+    sc:featureList edam:operation_2422,
+        edam:operation_3283,
+        edam:operation_3435 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "CamCOPS" ;
+    sc:operatingSystem "Windows" ;
+    sc:softwareHelp <https://camcops.readthedocs.io/> ;
+    sc:url "https://github.com/RudolfCardinal/camcops" .
+
 <https://bio.tools/camelia> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3295 ;
@@ -122735,7 +111999,7 @@ The R package part of CAFE can be installed in R using the devtools package and:
     sc:url "https://github.com/JxTang-bioinformatics/CaMelia" .
 
 <https://bio.tools/camels> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0128,
@@ -122754,14 +112018,14 @@ The R package part of CAFE can be installed in R using the devtools package and:
 
 <https://bio.tools/cameo> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ] ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein structure" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1539" ;
-            sc:name "Protein structural quality report" ;
-            sc:sameAs "http://edamontology.org/data_1539" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1539" ;
+            sc:encodingFormat "http://edamontology.org/format_1999" ;
+            sc:name "Protein structural quality report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0081 ;
@@ -122781,7 +112045,7 @@ The R package part of CAFE can be installed in R using the devtools package and:
     biotools:primaryContact <https://orcid.org/0000-0003-2715-335X> .
 
 <https://bio.tools/camera> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3172 ;
@@ -122801,7 +112065,7 @@ The R package part of CAFE can be installed in R using the devtools package and:
     biotools:primaryContact "Steffen Neumann" .
 
 <https://bio.tools/cameratransform> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_3315,
@@ -122819,7 +112083,7 @@ The R package part of CAFE can be installed in R using the devtools package and:
     sc:url "https://github.com/rgerum/cameratransform" .
 
 <https://bio.tools/camere> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0602,
         edam:topic_0821,
@@ -122836,7 +112100,7 @@ The R package part of CAFE can be installed in R using the devtools package and:
     sc:url "http://csbl.bmb.uga.edu/CaMeRe/" .
 
 <https://bio.tools/camitax> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0637,
         edam:topic_0769,
         edam:topic_2229,
@@ -122855,7 +112119,7 @@ The R package part of CAFE can be installed in R using the devtools package and:
     sc:url "https://github.com/CAMI-challenge/CAMITAX" .
 
 <https://bio.tools/cammiq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3174,
@@ -122870,7 +112134,7 @@ The R package part of CAFE can be installed in R using the devtools package and:
     sc:url "https://github.com/algo-cancer/CAMMiQ" .
 
 <https://bio.tools/camoip> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_2640,
@@ -122890,7 +112154,7 @@ The R package part of CAFE can be installed in R using the devtools package and:
     sc:url "https://www.camoip.net" .
 
 <https://bio.tools/camp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0621,
@@ -122910,7 +112174,7 @@ The R package part of CAFE can be installed in R using the devtools package and:
     biotools:primaryContact "Biomedical Informatics Centre" .
 
 <https://bio.tools/camp-peptide> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0123,
         edam:topic_0128,
@@ -122928,7 +112192,7 @@ The R package part of CAFE can be installed in R using the devtools package and:
     sc:url "https://github.com/twopin/CAMP" .
 
 <https://bio.tools/camparee> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -122953,7 +112217,7 @@ The R package part of CAFE can be installed in R using the devtools package and:
     sc:url "https://github.com/itmat/CAMPAREE" .
 
 <https://bio.tools/campo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0130,
@@ -122975,7 +112239,7 @@ The R package part of CAFE can be installed in R using the devtools package and:
     biotools:primaryContact "Alessandro Paiardin" .
 
 <https://bio.tools/campp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_0769,
@@ -122996,7 +112260,7 @@ The R package part of CAFE can be installed in R using the devtools package and:
     sc:url "https://github.com/ELELAB/CAncer-bioMarker-Prediction-Pipeline-CAMPP" .
 
 <https://bio.tools/camregbase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0153,
         edam:topic_0204,
         edam:topic_0749,
@@ -123013,7 +112277,7 @@ The R package part of CAFE can be installed in R using the devtools package and:
     sc:url "https://camregbase.org/" .
 
 <https://bio.tools/camsa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0654 ;
@@ -123029,7 +112293,7 @@ The R package part of CAFE can be installed in R using the devtools package and:
     biotools:primaryContact "Sergey S. Aganezov" .
 
 <https://bio.tools/camur> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_3168,
@@ -123046,7 +112310,7 @@ The R package part of CAFE can be installed in R using the devtools package and:
     biotools:primaryContact "Paola Bertolazzi" .
 
 <https://bio.tools/can_naming> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0176,
@@ -123067,7 +112331,7 @@ The R package part of CAFE can be installed in R using the devtools package and:
     sc:url "https://sourceforge.net/projects/canmd/" .
 
 <https://bio.tools/canary> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_2885 ;
@@ -123082,8 +112346,31 @@ The R package part of CAFE can be installed in R using the devtools package and:
     sc:url "https://github.com/PapenfussLab/Canary" ;
     biotools:primaryContact "Kenneth D. Doig" .
 
+<https://bio.tools/canary_conversion> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Suite" ;
+    sc:applicationSubCategory edam:topic_0625,
+        edam:topic_2885,
+        edam:topic_3316,
+        edam:topic_3379,
+        edam:topic_3517 ;
+    sc:citation <https://doi.org/10.1186/S12859-022-04822-8>,
+        "pmcid:PMC9327220",
+        "pubmed:35896971" ;
+    sc:description "Canary is a bioinformatics tool that allows for the automatic conversion of MaCH dosage files (mlinfo and mldose) into PLINK1 and PLINK2 compatible files." ;
+    sc:featureList edam:operation_0335,
+        edam:operation_3196,
+        edam:operation_3557,
+        edam:operation_3891 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "Canary" ;
+    sc:operatingSystem "Linux" ;
+    sc:url "https://github.com/anb94/Canary" .
+
 <https://bio.tools/canbind> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3534 ;
@@ -123097,30 +112384,30 @@ The R package part of CAFE can be installed in R using the devtools package and:
 
 <https://bio.tools/cancer> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Gene expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ],
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_1920" ;
+            sc:name "Sequence variations" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ],
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:encodingFormat "http://edamontology.org/format_1920" ;
+            sc:name "Sequence features" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ] ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_1920" ;
+            sc:name "Gene expression data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ],
+            sc:additionalType "http://edamontology.org/data_0920" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Genotype/phenotype report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2984" ;
-            sc:name "Pathway or network report" ;
-            sc:sameAs "http://edamontology.org/data_2984" ],
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Plot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0920" ;
-            sc:name "Genotype/phenotype report" ;
-            sc:sameAs "http://edamontology.org/data_0920" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2984" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Pathway or network report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -123142,7 +112429,7 @@ The R package part of CAFE can be installed in R using the devtools package and:
     biotools:primaryContact "Karim Mezhoud" .
 
 <https://bio.tools/cancer-sigvar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0622,
@@ -123157,31 +112444,93 @@ The R package part of CAFE can be installed in R using the devtools package and:
     sc:name "Cancer SIGVAR" ;
     sc:url "http://cancersigvar.bgi.com/" .
 
-<https://bio.tools/cancer_autogenerated> a sc:SoftwareApplication ;
+<https://bio.tools/cancer_crc> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Bioinformatics portal",
+        "Database portal" ;
+    sc:applicationSubCategory edam:topic_0602,
+        edam:topic_0749,
+        edam:topic_2640,
+        edam:topic_3169,
+        edam:topic_3940 ;
+    sc:citation <https://doi.org/10.3389/FONC.2021.761700>,
+        "pmcid:PMC8546348",
+        "pubmed:34712617" ;
+    sc:description "CancerCRCdb is a comprehensive database of human core regulatory circuitry." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_3222,
+        edam:operation_3501 ;
+    sc:isAccessibleForFree true ;
+    sc:name "Cancer CRC" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://bio.liclab.net/Cancer_crc/index.html" .
+
+<https://bio.tools/cancer_deiso> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0203,
-        edam:topic_0602,
         edam:topic_2640,
+        edam:topic_3170,
         edam:topic_3360,
         edam:topic_3512 ;
-    sc:citation <https://doi.org/10.3892/OL.2019.10698>,
-        "pmcid:PMC6757265",
-        "pubmed:31579079" ;
-    sc:description """Identification of key pathways and genes in colorectal cancer to predict the prognosis based on mRNA interaction network.
-
-The Cancer Genome Atlas (TCGA) is a landmark cancer genomics program that sequenced and molecularly characterized over 11,000 cases of primary cancer samples. Learn more about how the program transformed the cancer research community and beyond.
-
-||| NAME (cancer) SIMILAR TO (PUB. DIFFERENT) bio.tools/cancer (canceR).
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'limma' (bio.tools/limma), 'CRC' (bio.tools/CRC), 'KEGG', 'CDKN1A'""" ;
-    sc:featureList edam:operation_2495,
-        edam:operation_3083,
+    sc:citation <https://doi.org/10.1016/J.CSBJ.2021.09.005>,
+        "pmcid:PMC8463781",
+        "pubmed:34589189" ;
+    sc:description "An integrative analysis platform for investigating differentially expressed gene-level and isoform-level human cancer markers" ;
+    sc:featureList edam:operation_0264,
+        edam:operation_0315,
         edam:operation_3223,
-        edam:operation_3439 ;
-    sc:name "cancer_autogenerated" ;
-    sc:url "https://www.cancer.gov/tcga" .
+        edam:operation_3431 ;
+    sc:isAccessibleForFree true ;
+    sc:name "Cancer DEIso" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://cosbi4.ee.ncku.edu.tw/DEIso/" .
+
+<https://bio.tools/cancer_predisposition_sequencing_reporter> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence variations" ] ;
+    bsc:output [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_3620" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Workflow" ;
+    sc:applicationSubCategory edam:topic_0091,
+        edam:topic_0622,
+        edam:topic_2640,
+        edam:topic_3063,
+        edam:topic_3577 ;
+    sc:citation <https://doi.org/10.1002/ijc.33749>,
+        "pubmed:34310709" ;
+    sc:contributor <https://orcid.org/0000-0002-7502-7545> ;
+    sc:description "The Cancer Predisposition Sequencing Reporter (CPSR) is a computational workflow that interprets and classifies germline DNA variants identified from next-generation sequencing in the context of cancer predisposition and inherited cancer syndromes. The workflow can also report incidental findings (ACMG v3.0) as well as the genotypes of common germline variants associated with cancer risk, as reported in the NHGRI-EBI GWAS catalog." ;
+    sc:featureList edam:operation_0331,
+        edam:operation_3225,
+        edam:operation_3226,
+        edam:operation_3661,
+        edam:operation_3672 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "Cancer Predisposition Sequencing Reporter (CPSR)" ;
+    sc:operatingSystem "Linux",
+        "Mac" ;
+    sc:softwareHelp <https://sigven.github.io/cpsr/articles/installation.html>,
+        <https://sigven.github.io/cpsr/articles/running.html#all-options>,
+        <https://sigven.github.io/cpsr/authors.html#citation>,
+        <https://sigven.github.io/cpsr/index.html#getting-started> ;
+    sc:softwareVersion "1.0.0" ;
+    sc:url "https://github.com/sigven/cpsr" ;
+    biotools:primaryContact <https://orcid.org/0000-0001-8468-2050> .
 
 <https://bio.tools/cancer_subtyping> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_2640,
@@ -123200,8 +112549,21 @@ The purpose of the project is to stratify the cancer patients into clinical asso
     sc:name "cancer_subtyping" ;
     sc:url "https://github.com/tjgu/cancer_subtyping" .
 
+<https://bio.tools/cancerabc> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:description "CancerABC is a manually curated comprehensive database containing information of the cell-free Nucleic Acid biomarkers against cancer" ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "CancerABC" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/cancerabcd/> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/cancerabcd/" .
+
 <https://bio.tools/canceralign> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0199,
@@ -123216,7 +112578,7 @@ The purpose of the project is to stratify the cancer patients into clinical asso
     sc:url "https://github.com/bowen-gao/cancerAlign" .
 
 <https://bio.tools/cancercellnet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -123235,8 +112597,24 @@ The purpose of the project is to stratify the cancer patients into clinical asso
     sc:name "CancerCellNet" ;
     sc:url "http://www.cahanlab.org/resources/cancerCellNet_web" .
 
+<https://bio.tools/cancercelltracker> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workbench",
+        "Workflow" ;
+    sc:applicationSubCategory edam:topic_2229,
+        edam:topic_2640,
+        edam:topic_3382 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC417>,
+        "pubmed:35751591" ;
+    sc:description "A framework, CancerCellTracker to process the time-lapse microscopy images and track the behavior of thousands of MM cells simultaneously for drug response prediction of patients" ;
+    sc:featureList edam:operation_3443 ;
+    sc:license "Not licensed" ;
+    sc:name "CancerCellTracker" ;
+    sc:operatingSystem "Linux" ;
+    sc:url "https://github.com/compbiolabucf/CancerCellTracker" .
+
 <https://bio.tools/cancerclass> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2640,
@@ -123255,7 +112633,7 @@ The purpose of the project is to stratify the cancer patients into clinical asso
     biotools:primaryContact "Daniel Kosztyla" .
 
 <https://bio.tools/cancercocoputs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0659,
@@ -123277,8 +112655,50 @@ The purpose of the project is to stratify the cancer patients into clinical asso
         "Windows" ;
     sc:url "https://dnahive.fda.gov/review/cancercocoputs/" .
 
+<https://bio.tools/cancercsp> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:citation <https://doi.org/10.1038/srep44997>,
+        "pubmed:28349958" ;
+    sc:description "CancerCSP (clear cell renal cancer stage prediction) is a web-bench developed for predicting Early and Late stage of clear cell renal cell carcinoma (ccRCC) patients using gene expression data derived from RNA-seq experiments in the form of RNA-Seq by Expectation Maximization (RSEM) values." ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "CancerCSP" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/cancercsp/index.php> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/cancercsp/index.php" .
+
+<https://bio.tools/cancerdp> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:citation <https://doi.org/10.1038/srep23857>,
+        "pubmed:27030518" ;
+    sc:description "cancerdp: Prioritization of anticancer drugs" ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "cancerdp" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/cancerdp/about.php> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/cancerdp/about.php" .
+
+<https://bio.tools/cancerdr> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:citation <https://doi.org/10.1038/srep01445>,
+        "pubmed:23486013" ;
+    sc:description "CancerDR is the compilation of mutation data and pharmacological drug profiles from Catalogue Of Somatic Mutations (COSMIC)and Cancer Cell Line Encyclopedia (CCLE)" ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "CancerDR" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/cancerdr/general.php> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/cancerdr/general.php" .
+
 <https://bio.tools/canceremc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_2640,
@@ -123295,7 +112715,7 @@ The purpose of the project is to stratify the cancer patients into clinical asso
     sc:url "https://github.com/saifurcubd/Cancer-Detection" .
 
 <https://bio.tools/cancerend> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0203,
@@ -123313,8 +112733,21 @@ CancerEnD Genome-wide association studies have successfully identified thousands
     sc:name "CancerEnD" ;
     sc:url "https://webs.iiitd.edu.in/raghava/cancerend/" .
 
+<https://bio.tools/canceres> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:description "One stop portal for cancer resources" ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "canceres" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/canceres/db.php> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/canceres/db.php" .
+
 <https://bio.tools/cancergram> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2229,
@@ -123328,8 +112761,21 @@ Antimicrobial peptides (AMPs) constitute a diverse group of bioactive molecules
     sc:name "CancerGram" ;
     sc:url "http://biongram.biotech.uni.wroc.pl/CancerGram/" .
 
+<https://bio.tools/cancerhla1> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:description "Class-I HLA alleles Database" ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "cancerhla1" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/cancerhla1/index.php> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/cancerhla1/index.php" .
+
 <https://bio.tools/cancerimmunityqtl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0625,
         edam:topic_2640,
@@ -123347,7 +112793,7 @@ Tumor-infiltrating immune cells, as the component of tumor microenvironment, cou
     sc:url "http://www.cancerimmunityqtl-hust.com/" .
 
 <https://bio.tools/cancerinsilico> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2640 ;
@@ -123366,7 +112812,7 @@ Tumor-infiltrating immune cells, as the component of tumor microenvironment, cou
         "Thomas D. Sherman" .
 
 <https://bio.tools/cancerliver> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -123385,7 +112831,7 @@ Tumor-infiltrating immune cells, as the component of tumor microenvironment, cou
     sc:url "https://webs.iiitd.edu.in/raghava/cancerliver" .
 
 <https://bio.tools/cancermirnome> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_2640,
@@ -123404,22 +112850,22 @@ Tumor-infiltrating immune cells, as the component of tumor microenvironment, cou
 
 <https://bio.tools/cancermutationanalysis> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1025" ;
-            sc:name "Gene identifier" ;
-            sc:sameAs "http://edamontology.org/data_1025" ],
+            sc:additionalType "http://edamontology.org/data_3273" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Sample ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3273" ;
-            sc:name "Sample ID" ;
-            sc:sameAs "http://edamontology.org/data_3273" ] ;
+            sc:additionalType "http://edamontology.org/data_1025" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Gene identifier" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1772" ;
-            sc:name "Score" ;
-            sc:sameAs "http://edamontology.org/data_1772" ],
+            sc:additionalType "http://edamontology.org/data_1669" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "P-value" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1669" ;
-            sc:name "P-value" ;
-            sc:sameAs "http://edamontology.org/data_1669" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1772" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Score" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0199,
@@ -123438,8 +112884,46 @@ Tumor-infiltrating immune cells, as the component of tumor microenvironment, cou
     sc:url "http://bioconductor.org/packages/release/bioc/html/CancerMutationAnalysis.html" ;
     biotools:primaryContact "Simina M. Boca" .
 
+<https://bio.tools/cancernet> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Desktop application",
+        "Workbench" ;
+    sc:applicationSubCategory edam:topic_2640,
+        edam:topic_3173,
+        edam:topic_3360,
+        edam:topic_3474,
+        edam:topic_3518 ;
+    sc:citation <https://doi.org/10.1186/S12859-022-04783-Y>,
+        "pmcid:PMC9195411",
+        "pubmed:35698059" ;
+    sc:description "A VAE based deep learning approach to cancer tissue of origin classification." ;
+    sc:featureList edam:operation_3935 ;
+    sc:license "Not licensed" ;
+    sc:name "CancerNet" ;
+    sc:url "https://www.cancer.gov/tcga" .
+
+<https://bio.tools/canceromicsnet> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_0203,
+        edam:topic_0602,
+        edam:topic_2640,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.18632/ONCOTARGET.28234>,
+        "pmcid:PMC9119687",
+        "pubmed:35601606" ;
+    sc:description "A Graph Neural Network Model for prediction of the effectiveness of a drug on a given cancer cell lines" ;
+    sc:featureList edam:operation_3223,
+        edam:operation_3927,
+        edam:operation_3938 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "CancerOmicsNet" ;
+    sc:url "https://github.com/pulimeng/CancerOmicsNet" .
+
 <https://bio.tools/cancerouspdomains> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0199,
@@ -123455,8 +112939,25 @@ Tumor-infiltrating immune cells, as the component of tumor microenvironment, cou
     sc:url "http://www.cancerouspdomains.ir/" ;
     biotools:primaryContact "Zahra Razaghi-Moghadam" .
 
+<https://bio.tools/cancerpdf> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:citation <https://doi.org/10.1038/s41598-017-01633-3>,
+        "pmcid:PMC5431423",
+        "pubmed:28473704" ;
+    sc:description "CancerPDF is a manually curated database of cancer-associated peptides found in different human bodyfluids (e.g., serum, urine, plasma and saliva)." ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "CancerPDF" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/cancerpdf/index.php> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/cancerpdf/index.php" .
+
 <https://bio.tools/cancerppd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0219,
@@ -123471,11 +112972,11 @@ Tumor-infiltrating immune cells, as the component of tumor microenvironment, cou
         "Mac",
         "Windows" ;
     sc:softwareHelp <http://crdd.osdd.net/raghava/cancerppd/info.php> ;
-    sc:url "http://crdd.osdd.net/raghava/cancerppd/" ;
+    sc:url "https://webs.iiitd.edu.in/raghava/cancerppd/" ;
     biotools:primaryContact "Gajendra P. S. Raghava" .
 
 <https://bio.tools/cancerpred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2640 ;
@@ -123488,10 +112989,10 @@ Tumor-infiltrating immune cells, as the component of tumor microenvironment, cou
         "Mac",
         "Windows" ;
     sc:softwareHelp <http://crdd.osdd.net/raghava/cancer_pred/help.html> ;
-    sc:url "http://www.imtech.res.in/raghava/cancer_pred/" .
+    sc:url "https://webs.iiitd.edu.in/raghava/cancer_pred/" .
 
 <https://bio.tools/cancerresource> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0208,
@@ -123510,8 +113011,31 @@ Tumor-infiltrating immune cells, as the component of tumor microenvironment, cou
     biotools:primaryContact "Bjoern Gohlke",
         "Robert Preissner" .
 
+<https://bio.tools/cancerscem> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0099,
+        edam:topic_0203,
+        edam:topic_2229,
+        edam:topic_2640,
+        edam:topic_3170 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAB905>,
+        "pmcid:PMC8728207",
+        "pubmed:34643725" ;
+    sc:description "Database of single-cell expression map across various human cancers." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_0337,
+        edam:operation_3463,
+        edam:operation_3891 ;
+    sc:isAccessibleForFree true ;
+    sc:name "CancerSCEM" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://ngdc.cncb.ac.cn/cancerscem" .
+
 <https://bio.tools/cancersiamese> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2640,
         edam:topic_3170,
@@ -123531,7 +113055,7 @@ Tumor-infiltrating immune cells, as the component of tumor microenvironment, cou
         "Yidong Chen" .
 
 <https://bio.tools/cancersign> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0622,
         edam:topic_2640,
@@ -123548,8 +113072,21 @@ Tumor-infiltrating immune cells, as the component of tumor microenvironment, cou
     sc:name "CANCERSIGN" ;
     sc:url "https://github.com/bcb-sut/CANCERSIGN" .
 
+<https://bio.tools/cancersp> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:description "CancerSP is a web bench developed for analyzing genomics data and for predicting Early and Late stage of cancer using genomics data." ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "CancerSP" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/cancersp/index.php> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/cancersp/index.php" .
+
 <https://bio.tools/cancersubtypes> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -123568,8 +113105,23 @@ Tumor-infiltrating immune cells, as the component of tumor microenvironment, cou
     sc:url "http://bioconductor.org/packages/release/bioc/html/CancerSubtypes.html" ;
     biotools:primaryContact "Taosheng Xu" .
 
+<https://bio.tools/cancertope> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:citation <https://doi.org/10.1371/journal.pone.0166372> ;
+    sc:description """In silico Platform for designing genome-based
+Personalized immunotherapy or Vaccine against Cancer.""" ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "cancertope" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/cancertope/index.php> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/cancertope/index.php" .
+
 <https://bio.tools/cancertsp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2640,
         edam:topic_3170,
@@ -123585,8 +113137,44 @@ Tumor-infiltrating immune cells, as the component of tumor microenvironment, cou
     sc:name "CancerTSP" ;
     sc:url "http://webs.iiitd.edu.in/raghava/cancertsp/" .
 
+<https://bio.tools/cancerubm> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:description "CancerUBM is a web bench developed for analyzing proteomics data and for predicting cancer status of a urine sample from its proteomics data." ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "cancerubm" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/cancerubm/index.php> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/cancerubm/index.php" .
+
+<https://bio.tools/cancervaccine> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_2640,
+        edam:topic_3379,
+        edam:topic_3474,
+        edam:topic_3966 ;
+    sc:citation <https://doi.org/10.3389/FIMMU.2022.931612>,
+        "pmcid:PMC9364268",
+        "pubmed:35967400" ;
+    sc:description "A library of peptide-based cancer vaccines and their clinical attributes, named CancerVaccine" ;
+    sc:featureList edam:operation_0252,
+        edam:operation_0416,
+        edam:operation_0560 ;
+    sc:license "Not licensed" ;
+    sc:name "CancerVaccine" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://peptidecancervaccine.weebly.com/" .
+
 <https://bio.tools/cancervar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0634,
@@ -123602,7 +113190,7 @@ Tumor-infiltrating immune cells, as the component of tumor microenvironment, cou
     sc:url "http://cancervar.wglab.org" .
 
 <https://bio.tools/cand> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0084 ;
@@ -123619,8 +113207,31 @@ Tumor-infiltrating immune cells, as the component of tumor microenvironment, cou
     sc:url "http://bioconductor.org/packages/release/bioc/html/CAnD.html" ;
     biotools:primaryContact "Caitlin McHugh" .
 
+<https://bio.tools/candi_integrator> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0622,
+        edam:topic_2229,
+        edam:topic_2640,
+        edam:topic_3170,
+        edam:topic_3572 ;
+    sc:citation <https://doi.org/10.1186/S13073-021-00987-8>,
+        "pmcid:PMC8524992",
+        "pubmed:34663427" ;
+    sc:description "CanDI - A global cancer data integrator." ;
+    sc:featureList edam:operation_1812,
+        edam:operation_2422,
+        edam:operation_3223 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "CanDI" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/GilbertLabUCSF/CanDI" .
+
 <https://bio.tools/candihap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0780,
@@ -123639,7 +113250,7 @@ Tumor-infiltrating immune cells, as the component of tumor microenvironment, cou
     sc:url "https://github.com/xukaili/CandiHap" .
 
 <https://bio.tools/candis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0602,
@@ -123655,7 +113266,7 @@ Tumor-infiltrating immune cells, as the component of tumor microenvironment, cou
     sc:url "http://candis.ijs.si" .
 
 <https://bio.tools/candissr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654,
@@ -123670,7 +113281,7 @@ Tumor-infiltrating immune cells, as the component of tumor microenvironment, cou
     biotools:primaryContact "Li-Zhi Gao" .
 
 <https://bio.tools/candock> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0196,
         edam:topic_0209,
@@ -123688,7 +113299,7 @@ Tumor-infiltrating immune cells, as the component of tumor microenvironment, cou
     sc:url "https://github.com/chopralab/candock" .
 
 <https://bio.tools/candris> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Bioinformatics portal",
         "Script" ;
     sc:applicationSubCategory edam:topic_0199,
@@ -123707,7 +113318,7 @@ Tumor-infiltrating immune cells, as the component of tumor microenvironment, cou
         "Zhan Zhou" .
 
 <https://bio.tools/candycodes> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_3303,
         edam:topic_3318,
@@ -123722,7 +113333,7 @@ Tumor-infiltrating immune cells, as the component of tumor microenvironment, cou
     biotools:primaryContact <https://orcid.org/0000-0001-6854-8951> .
 
 <https://bio.tools/caneapp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3168,
@@ -123742,7 +113353,7 @@ Tumor-infiltrating immune cells, as the component of tumor microenvironment, cou
     biotools:primaryContact "Dmitry Velmeshev" .
 
 <https://bio.tools/canevolve> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0108,
@@ -123766,7 +113377,7 @@ Tumor-infiltrating immune cells, as the component of tumor microenvironment, cou
     biotools:primaryContact "Support" .
 
 <https://bio.tools/cangs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3174,
         edam:topic_3293 ;
@@ -123782,7 +113393,7 @@ Tumor-infiltrating immune cells, as the component of tumor microenvironment, cou
     biotools:primaryContact "Schlötterer C." .
 
 <https://bio.tools/canimmunother> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0219,
         edam:topic_2640,
@@ -123803,7 +113414,7 @@ Tumor-infiltrating immune cells, as the component of tumor microenvironment, cou
     sc:url "http://www.biomedical-web.com/cancerit/" .
 
 <https://bio.tools/cannuse> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0637,
         edam:topic_0780,
@@ -123821,7 +113432,7 @@ Tumor-infiltrating immune cells, as the component of tumor microenvironment, cou
     biotools:primaryContact <https://orcid.org/0000-0002-4316-8511> .
 
 <https://bio.tools/cano-wgMLST_BacCompare> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3293,
         edam:topic_3305 ;
@@ -123836,7 +113447,7 @@ Tumor-infiltrating immune cells, as the component of tumor microenvironment, cou
     sc:url "http://baccompare.imst.nsysu.edu.tw" .
 
 <https://bio.tools/canopus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0780,
@@ -123855,8 +113466,22 @@ Tumor-infiltrating immune cells, as the component of tumor microenvironment, cou
     sc:name "CANOPUS" ;
     sc:url "https://bio.informatik.uni-jena.de/software/canopus/" .
 
+<https://bio.tools/canopy> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_2269 ;
+    sc:description "Our variation of canopy clustering focuses on efficient clustering of points in multi-dimensional pearson correlation space. The basic notion of the heuristic is choosing a point(seed point) at random, and upon establishing it's distance to all the other points, single out those that are within a specified canopy distance. A median profile of those points is then calculated creating a canopy centroid. The canopy creation process is then repeated perpetually(canopy walk) from the previously created centroid until the distance between previous centroid is small enough. All points from the last canopy are then marked, and will not become seed points again. The above will be repeated for all possible seed points." ;
+    sc:featureList edam:operation_3432 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "canopy" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://bitbucket.org/HeyHo/mgs-canopy-algorithm/wiki/Home" .
+
 <https://bio.tools/canpredict> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -123871,8 +113496,14 @@ Tumor-infiltrating immune cells, as the component of tumor microenvironment, cou
     sc:name "CanPredict" ;
     sc:url "http://www.cgl.ucsf.edu/Research/genentech/canpredict/" .
 
+<https://bio.tools/canprosite> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:description "CanProSite is developed in IIT Madras from Protein Bioinformatics Lab. It is useful for the identification of disease prone sites in lung cancer using deep neural network" ;
+    sc:name "CanProSite" ;
+    sc:url "https://web.iitm.ac.in/bioinfo2/CanProSite/" .
+
 <https://bio.tools/canrisk> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_2640,
@@ -123888,7 +113519,7 @@ Tumor-infiltrating immune cells, as the component of tumor microenvironment, cou
     sc:url "http://CanRisk.org" .
 
 <https://bio.tools/cansar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0209,
@@ -123907,8 +113538,29 @@ Tumor-infiltrating immune cells, as the component of tumor microenvironment, cou
     sc:url "https://cansar.icr.ac.uk/" ;
     biotools:primaryContact "The Institute of Cancer Research" .
 
+<https://bio.tools/cansarchem> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application",
+        "Workflow" ;
+    sc:applicationSubCategory edam:topic_0202,
+        edam:topic_0769,
+        edam:topic_2640,
+        edam:topic_3336,
+        edam:topic_3371 ;
+    sc:citation <https://doi.org/10.1186/S13321-022-00606-7>,
+        "pmcid:PMC9148294",
+        "pubmed:35643512" ;
+    sc:description "canSAR is a chemistry registration and standardization pipeline." ;
+    sc:featureList edam:operation_3435,
+        edam:operation_4009 ;
+    sc:isAccessibleForFree true ;
+    sc:license "CC-BY-SA-4.0" ;
+    sc:name "canSARchem" ;
+    sc:softwareHelp <https://www.knime.com/terms-forum-hub> ;
+    sc:url "http://cansar.icr.ac.uk" .
+
 <https://bio.tools/cansnper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_2885,
@@ -123923,8 +113575,31 @@ Tumor-infiltrating immune cells, as the component of tumor microenvironment, cou
     sc:softwareHelp <https://github.com/adrlar/CanSNPer> ;
     sc:url "https://github.com/adrlar/CanSNPer" .
 
+<https://bio.tools/cant-hyd> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0160,
+        edam:topic_0219,
+        edam:topic_0602,
+        edam:topic_3168,
+        edam:topic_3174 ;
+    sc:citation <https://doi.org/10.3389/FMICB.2021.764058>,
+        "pmcid:PMC8767102",
+        "pubmed:35069469" ;
+    sc:description "Calgary approach to ANnoTating HYDrocarbon degradation genes (CANT-HYD), a database of 37 HMMs of marker genes involved in anaerobic and aerobic degradation pathways of aliphatic and aromatic hydrocarbons." ;
+    sc:featureList edam:operation_0224,
+        edam:operation_0362,
+        edam:operation_3928 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "CANT-HYD" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/dgittins/CANT-HYD-HydrocarbonBiodegradation" .
+
 <https://bio.tools/cantare> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0769,
@@ -123942,7 +113617,7 @@ Tumor-infiltrating immune cells, as the component of tumor microenvironment, cou
     sc:url "https://sourceforge.net/projects/cytomelodics/files/CANTARE/" .
 
 <https://bio.tools/canu> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622 ;
     sc:citation <https://doi.org/10.1101/gr.215087.116> ;
@@ -123955,7 +113630,7 @@ Tumor-infiltrating immune cells, as the component of tumor microenvironment, cou
     sc:url "https://github.com/marbl/canu" .
 
 <https://bio.tools/canvar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
@@ -123976,7 +113651,7 @@ Tumor-infiltrating immune cells, as the component of tumor microenvironment, cou
     sc:url "https://canvar.icr.ac.uk" .
 
 <https://bio.tools/canvas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0625,
@@ -123992,8 +113667,49 @@ Tumor-infiltrating immune cells, as the component of tumor microenvironment, cou
     sc:url "http://ithaka.rrp.demokritos.gr/CanVaS/genes" ;
     biotools:primaryContact <https://orcid.org/0000-0002-3369-2360> .
 
+<https://bio.tools/canvas1> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1915" ;
+            sc:name "Sequence" ] ;
+    bsc:output [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2523" ;
+            sc:encodingFormat "http://edamontology.org/format_1915" ;
+            sc:name "Phylogenetic data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:applicationSubCategory edam:topic_3070,
+        edam:topic_3316,
+        edam:topic_3391 ;
+    sc:description "Complexity Analysis Viral Sequences" ;
+    sc:featureList edam:operation_2945,
+        edam:operation_2990 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "CANVAS" ;
+    sc:operatingSystem "Linux" ;
+    sc:softwareHelp <https://github.com/jorgeMFS/canvas/blob/main/README.md> ;
+    sc:softwareVersion "1.0" ;
+    sc:url "https://github.com/jorgeMFS/canvas" ;
+    biotools:primaryContact "Jorge Miguel Ferreira da Silva" .
+
+<https://bio.tools/canvs> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0089,
+        edam:topic_0121,
+        edam:topic_0128,
+        edam:topic_0769 ;
+    sc:citation <https://doi.org/10.1091/MBC.E21-05-0257>,
+        "pubmed:34432510" ;
+    sc:description "CANVS is an easy-to-use application for the analysis and visualization of mass spectrometry-based protein-protein interaction/association data. The elucidation of a protein's interaction association network is important for defining its biological function. Mass spectrometry-based proteomic approaches have emerged as powerful tools for identifying protein-protein interactions (PPIs) and protein-protein associations (PPAs). However, interactome association experiments are difficult to interpret, considering the complexity and abundance of data that are generated. Although tools have been developed to identify protein interactions associations quantitatively, there is still a pressing need for easy-to-use tools that allow users to contextualize their results. To address this, we developed CANVS, a computational pipeline that cleans, analyzes, and visualizes mass spectrometry-based interactome association data" ;
+    sc:featureList edam:operation_2949,
+        edam:operation_3799,
+        edam:operation_3925 ;
+    sc:name "CANVS" ;
+    sc:url "https://sourceforge.net/projects/canvs/files/" .
+
 <https://bio.tools/caomicsv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -124012,8 +113728,14 @@ Tumor-infiltrating immune cells, as the component of tumor microenvironment, cou
     sc:url "http://bioconductor.org/packages/release/bioc/html/caOmicsV.html" ;
     biotools:primaryContact "Henry Zhang" .
 
+<https://bio.tools/caosdb> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:description "CaosDB is a software toolbox for data management. Its focus lies on managing data in dynamic environments of research and development where changes are too frequent or projects are too small to bear the great cost of implementing a traditional specialized and but inflexible data management system. The research data management system (RDMS) CaosDB uses a semantic data model that allows to grow and change in those dynamic environments!" ;
+    sc:name "CaosDB" ;
+    sc:url "https://caosdb.org/" .
+
 <https://bio.tools/cap3> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0196,
@@ -124034,7 +113756,7 @@ Tumor-infiltrating immune cells, as the component of tumor microenvironment, cou
     biotools:primaryContact "X. Huang" .
 
 <https://bio.tools/capC-MAP> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0632,
         edam:topic_3068,
@@ -124053,7 +113775,7 @@ Tumor-infiltrating immune cells, as the component of tumor microenvironment, cou
     biotools:primaryContact "Chris A. Brackley" .
 
 <https://bio.tools/capdsd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0602,
@@ -124070,7 +113792,7 @@ Tumor-infiltrating immune cells, as the component of tumor microenvironment, cou
     biotools:primaryContact "Ben Hescott" .
 
 <https://bio.tools/cape> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0625,
@@ -124090,7 +113812,7 @@ Tumor-infiltrating immune cells, as the component of tumor microenvironment, cou
     biotools:primaryContact "Anna L. Tyler" .
 
 <https://bio.tools/capipy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Library" ;
     sc:applicationSubCategory edam:topic_0078,
@@ -124106,7 +113828,7 @@ Tumor-infiltrating immune cells, as the component of tumor microenvironment, cou
     sc:url "https://github.com/drou0302/CapiPy" .
 
 <https://bio.tools/capiu> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3277,
         edam:topic_3518 ;
@@ -124122,7 +113844,7 @@ Tumor-infiltrating immune cells, as the component of tumor microenvironment, cou
     biotools:primaryContact "Henning Redestig" .
 
 <https://bio.tools/capl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_3077,
         edam:topic_3318 ;
@@ -124135,7 +113857,7 @@ Tumor-infiltrating immune cells, as the component of tumor microenvironment, cou
     sc:url "http://www.github.com/barnzilla/capl" .
 
 <https://bio.tools/capr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0097,
@@ -124150,7 +113872,7 @@ Tumor-infiltrating immune cells, as the component of tumor microenvironment, cou
     biotools:primaryContact "Tsukasa Fukunaga" .
 
 <https://bio.tools/caprib> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0154,
@@ -124168,7 +113890,7 @@ Tumor-infiltrating immune cells, as the component of tumor microenvironment, cou
     sc:url "https://github.com/BactSymEvol/Caprib" .
 
 <https://bio.tools/caps-db> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0154,
@@ -124189,7 +113911,7 @@ Tumor-infiltrating immune cells, as the component of tumor microenvironment, cou
     biotools:primaryContact "Narcis Fernandez-Fuentes" .
 
 <https://bio.tools/capsim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3168,
         edam:topic_3379,
@@ -124206,7 +113928,7 @@ Tumor-infiltrating immune cells, as the component of tumor microenvironment, cou
     biotools:primaryContact "Lachlan J M Coin" .
 
 <https://bio.tools/capsnet-ssp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -124224,7 +113946,7 @@ Tumor-infiltrating immune cells, as the component of tumor microenvironment, cou
     sc:url "http://www.csbg-jlu.info/CapsNet-SSP/" .
 
 <https://bio.tools/capsule-lpi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0160,
@@ -124242,8 +113964,52 @@ Tumor-infiltrating immune cells, as the component of tumor microenvironment, cou
     sc:softwareHelp <http://csbg-jlu.site/lpc/help/> ;
     sc:url "http://csbg-jlu.site/lpc/predict" .
 
+<https://bio.tools/capt> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0637,
+        edam:topic_0780,
+        edam:topic_3293,
+        edam:topic_3794,
+        edam:topic_3944 ;
+    sc:citation <https://doi.org/10.3389/FGENE.2022.891240>,
+        "pmcid:PMC9158481",
+        "pubmed:35664339" ;
+    sc:description "An interactive web tool to provide taxonomic context for a given phylogenetic tree." ;
+    sc:featureList edam:operation_0323,
+        edam:operation_0325,
+        edam:operation_0326,
+        edam:operation_0551,
+        edam:operation_0567 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "CAPT" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/ghattab/CAPT" .
+
+<https://bio.tools/captor> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0091,
+        edam:topic_0601,
+        edam:topic_0634,
+        edam:topic_3300,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1142/S0219720021500293>,
+        "pubmed:34806952" ;
+    sc:description "Captor is a tool for O-glycosylation site prediction in Homo sapiens. It works by combining properties and sequence features with support vector machine." ;
+    sc:featureList edam:operation_0253,
+        edam:operation_0417,
+        edam:operation_3645 ;
+    sc:name "Captor" ;
+    sc:url "https://github.com/YanZhu06/Captor/" ;
+    biotools:primaryContact "Cangzhi Jia",
+        "Jia Zheng" .
+
 <https://bio.tools/capture> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0102,
@@ -124264,7 +114030,7 @@ Tumor-infiltrating immune cells, as the component of tumor microenvironment, cou
     sc:url "https://github.com/LieberInstitute/CaPTure" .
 
 <https://bio.tools/capturecompendium> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0632,
         edam:topic_0654,
@@ -124280,7 +114046,7 @@ Tumor-infiltrating immune cells, as the component of tumor microenvironment, cou
     sc:url "http://userweb.molbiol.ox.ac.uk/public/telenius/CaptureCompendium/" .
 
 <https://bio.tools/capweb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0654,
@@ -124297,7 +114063,7 @@ Tumor-infiltrating immune cells, as the component of tumor microenvironment, cou
     sc:url "http://bioinfo.curie.fr/CAPweb/" .
 
 <https://bio.tools/capybara> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0625,
@@ -124314,7 +114080,7 @@ Tumor-infiltrating immune cells, as the component of tumor microenvironment, cou
     sc:url "https://github.com/morris-lab/Capybara" .
 
 <https://bio.tools/car> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0622,
@@ -124332,8 +114098,42 @@ Tumor-infiltrating immune cells, as the component of tumor microenvironment, cou
     sc:url "http://genome.cs.nthu.edu.tw/CAR/" ;
     biotools:primaryContact "Dr. Chin Lung Lu" .
 
+<https://bio.tools/carbarrayart> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Desktop application" ;
+    sc:applicationSubCategory edam:topic_0152,
+        edam:topic_0203,
+        edam:topic_3292,
+        edam:topic_3489,
+        edam:topic_3518 ;
+    sc:citation <https://doi.org/10.1093/GLYCOB/CWAC018>,
+        "pubmed:35352122" ;
+    sc:description "Carbohydrate microArray Analysis and Reporting Tool (CarbArrayART) is a software tool for glycan microarray experimental design, data storage, processing, presentation and reporting." ;
+    sc:featureList edam:operation_2428,
+        edam:operation_2495,
+        edam:operation_3802 ;
+    sc:isAccessibleForFree true ;
+    sc:license "CC-BY-4.0" ;
+    sc:name "CarbArrayART" ;
+    sc:operatingSystem "Mac",
+        "Windows" ;
+    sc:url "https://glycosciences.med.ic.ac.uk/carbarrayart.html" .
+
+<https://bio.tools/carbotope> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:description "Carbohydrate epitope prediction server" ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "CARBOTOPE" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/carbotope/index.php> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/carbotope/index.php" .
+
 <https://bio.tools/carboxylator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0602,
@@ -124350,7 +114150,7 @@ Tumor-infiltrating immune cells, as the component of tumor microenvironment, cou
     biotools:primaryContact "Tzong-Yi Lee" .
 
 <https://bio.tools/cardec> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3170,
@@ -124371,7 +114171,7 @@ Tumor-infiltrating immune cells, as the component of tumor microenvironment, cou
         "Xiangjie Li" .
 
 <https://bio.tools/cardelino> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0625,
         edam:topic_3170,
@@ -124388,7 +114188,7 @@ Tumor-infiltrating immune cells, as the component of tumor microenvironment, cou
     sc:url "https://github.com/single-cell-genetics/cardelino" .
 
 <https://bio.tools/cardiac> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3068,
         edam:topic_3335,
@@ -124406,7 +114206,7 @@ Tumor-infiltrating immune cells, as the component of tumor microenvironment, cou
     biotools:primaryContact <https://orcid.org/0000-0003-3102-4374> .
 
 <https://bio.tools/cardiac-ischemia> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -124423,7 +114223,7 @@ Tumor-infiltrating immune cells, as the component of tumor microenvironment, cou
     biotools:primaryContact "Jiri Chmelik" .
 
 <https://bio.tools/cardiap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0632,
@@ -124442,14 +114242,14 @@ Tumor-infiltrating immune cells, as the component of tumor microenvironment, cou
 
 <https://bio.tools/cardinal> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ] ;
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:encodingFormat "http://edamontology.org/format_3682" ;
+            sc:name "Mass spectrometry data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -124470,7 +114270,7 @@ Tumor-infiltrating immune cells, as the component of tumor microenvironment, cou
     biotools:primaryContact "Kylie A. Bemis" .
 
 <https://bio.tools/cardioboost> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0634,
@@ -124487,7 +114287,7 @@ Tumor-infiltrating immune cells, as the component of tumor microenvironment, cou
     sc:url "https://www.cardiodb.org/cardioboost/" .
 
 <https://bio.tools/cardiopy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3063,
@@ -124502,8 +114302,25 @@ Tumor-infiltrating immune cells, as the component of tumor microenvironment, cou
     sc:name "CardioPy" ;
     sc:url "http://github.com/CardioPy/CardioPy" .
 
+<https://bio.tools/cardisort> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workflow" ;
+    sc:applicationSubCategory edam:topic_0769,
+        edam:topic_3384,
+        edam:topic_3444,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1007/S00330-022-08724-4>,
+        "pubmed:35368227" ;
+    sc:description "A convolutional neural network for cross vendor automated sorting of cardiac MR images." ;
+    sc:featureList edam:operation_3443,
+        edam:operation_3695,
+        edam:operation_3802 ;
+    sc:license "CC-BY-1.0" ;
+    sc:name "CardiSort" ;
+    sc:url "https://github.com/cianmscannell/cardisort" .
+
 <https://bio.tools/care> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3168,
@@ -124519,7 +114336,7 @@ Tumor-infiltrating immune cells, as the component of tumor microenvironment, cou
     sc:url "https://github.com/fkallen/CARE" .
 
 <https://bio.tools/caretta> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -124540,7 +114357,7 @@ Tumor-infiltrating immune cells, as the component of tumor microenvironment, cou
     sc:url "http://www.bioinformatics.nl/caretta" .
 
 <https://bio.tools/cargo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0218,
         edam:topic_0602,
@@ -124561,26 +114378,8 @@ Tumor-infiltrating immune cells, as the component of tumor microenvironment, cou
     sc:url "http://cargo2.bioinfo.cnio.es/docs/aboutCargo.html" ;
     biotools:primaryContact "José Manuel Rodríguez" .
 
-<https://bio.tools/carlet> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0084,
-        edam:topic_0199,
-        edam:topic_2229,
-        edam:topic_3676 ;
-    sc:citation <https://doi.org/10.1101/840355> ;
-    sc:description """Single-cell tumor phylogeny inference with copy-number constrained mutation losses.
-
-SCARLET (Single-cell Algorithm for Reconstructing Loss-supported Evolution of Tumors) is an algorithm that reconstructs tumor phylogenies from single-cell DNA sequencing data. SCARLET uses a loss-supported model that constrains mutation losses based on observed copy-number data.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'S carlet', 'loss-supported'""" ;
-    sc:featureList edam:operation_0323,
-        edam:operation_3196,
-        edam:operation_3799 ;
-    sc:license "BSD-3-Clause" ;
-    sc:name "carlet" ;
-    sc:url "http://github.com/raphael-group/scarlet" .
-
 <https://bio.tools/carmaweb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_1775,
@@ -124599,7 +114398,7 @@ SCARLET (Single-cell Algorithm for Reconstructing Loss-supported Evolution of Tu
     biotools:primaryContact "Johannes Rainer" .
 
 <https://bio.tools/carmen> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0622,
@@ -124613,7 +114412,7 @@ SCARLET (Single-cell Algorithm for Reconstructing Loss-supported Evolution of Tu
     sc:url "http://carmen.cebitec.uni-bielefeld.de" .
 
 <https://bio.tools/carmen-variant> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0625,
         edam:topic_2885,
@@ -124629,7 +114428,7 @@ Large-scale genome-wide association and expression quantitative trait loci studi
     sc:url "http://carmen.gao-lab.org" .
 
 <https://bio.tools/carmo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3168,
         edam:topic_3379,
@@ -124646,26 +114445,26 @@ Large-scale genome-wide association and expression quantitative trait loci studi
 
 <https://bio.tools/carna> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3495" ;
-            sc:name "RNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3495" ] ;
+            sc:additionalType "http://edamontology.org/data_3495" ;
+            sc:encodingFormat "http://edamontology.org/format_2200" ;
+            sc:name "RNA sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ],
+            sc:additionalType "http://edamontology.org/data_1916" ;
+            sc:encodingFormat "http://edamontology.org/format_1982" ;
+            sc:name "Alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0872" ;
-            sc:name "Phylogenetic tree" ;
-            sc:sameAs "http://edamontology.org/data_0872" ],
+            sc:additionalType "http://edamontology.org/data_0872" ;
+            sc:encodingFormat "http://edamontology.org/format_1910" ;
+            sc:name "Phylogenetic tree" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ],
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3508" ;
+            sc:name "Image" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1916" ;
-            sc:name "Alignment" ;
-            sc:sameAs "http://edamontology.org/data_1916" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0097 ;
@@ -124690,7 +114489,7 @@ Large-scale genome-wide association and expression quantitative trait loci studi
         "Sebastian Will" .
 
 <https://bio.tools/carnac> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0097,
@@ -124713,7 +114512,7 @@ Large-scale genome-wide association and expression quantitative trait loci studi
     biotools:primaryContact "Carnac team" .
 
 <https://bio.tools/carpools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3168,
@@ -124729,7 +114528,7 @@ Large-scale genome-wide association and expression quantitative trait loci studi
     sc:url "https://github.com/boutroslab/caRpools" .
 
 <https://bio.tools/carrie> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0204,
@@ -124751,7 +114550,7 @@ Large-scale genome-wide association and expression quantitative trait loci studi
     biotools:primaryContact "P. M. Haverty" .
 
 <https://bio.tools/carrot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3053 ;
@@ -124764,8 +114563,33 @@ Large-scale genome-wide association and expression quantitative trait loci studi
         "Windows" ;
     sc:url "http://carrot.stanford.edu/" .
 
+<https://bio.tools/cars-db> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0128,
+        edam:topic_0154,
+        edam:topic_0634,
+        edam:topic_0749,
+        edam:topic_3071 ;
+    sc:citation <https://doi.org/10.3389/FMOLB.2022.882160>,
+        "pmcid:PMC9309178",
+        "pubmed:35898309" ;
+    sc:description "A database of polar amylodogenic peptides from disordered proteins." ;
+    sc:featureList edam:operation_0470,
+        edam:operation_3431,
+        edam:operation_3436,
+        edam:operation_3904 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "CARs-DB" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://carsdb.ppmclab.com" .
+
 <https://bio.tools/carsite-ii> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0601,
@@ -124783,7 +114607,7 @@ Large-scale genome-wide association and expression quantitative trait loci studi
         "Xiangxiang Zeng" .
 
 <https://bio.tools/cartaj> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0082,
@@ -124800,7 +114624,7 @@ Large-scale genome-wide association and expression quantitative trait loci studi
     sc:url "http://cartaj.lri.fr/" .
 
 <https://bio.tools/carthagene> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3053 ;
@@ -124815,7 +114639,7 @@ Large-scale genome-wide association and expression quantitative trait loci studi
     biotools:primaryContact "Patrick Chabrier" .
 
 <https://bio.tools/cartmath> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0749,
@@ -124831,7 +114655,7 @@ Large-scale genome-wide association and expression quantitative trait loci studi
     biotools:primaryContact <https://orcid.org/0000-0002-8633-716X> .
 
 <https://bio.tools/cartogratree> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_3293,
@@ -124848,7 +114672,7 @@ Large-scale genome-wide association and expression quantitative trait loci studi
     sc:url "http://dendrome.ucdavis.edu/cartogratree/" .
 
 <https://bio.tools/carveme> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2259,
         edam:topic_3307,
@@ -124863,7 +114687,7 @@ Large-scale genome-wide association and expression quantitative trait loci studi
     sc:url "https://github.com/cdanielmachado/carveme" .
 
 <https://bio.tools/caryoscope> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0097,
@@ -124879,7 +114703,7 @@ Large-scale genome-wide association and expression quantitative trait loci studi
     sc:url "http://www.stanford.edu/group/sherlocklab/software.shtml" .
 
 <https://bio.tools/cas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2229,
@@ -124896,7 +114720,7 @@ Large-scale genome-wide association and expression quantitative trait loci studi
     biotools:primaryContact "Ray Sachs" .
 
 <https://bio.tools/cas-designer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0154,
@@ -124912,14 +114736,14 @@ Large-scale genome-wide association and expression quantitative trait loci studi
     sc:url "http://rgenome.net/cas-designer/" .
 
 <https://bio.tools/cas-offinder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "Cas-OFFinder is OpenCL based, ultrafast and versatile program that searches for potential off-target sites of CRISPR/Cas-derived RNA-guided endonucleases (RGEN)." ;
     sc:featureList edam:operation_3938 ;
     sc:name "Cas-OFFinder" ;
     sc:url "https://github.com/snugel/cas-offinder" .
 
 <https://bio.tools/cas-seed> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
         edam:topic_3168 ;
@@ -124931,8 +114755,30 @@ Large-scale genome-wide association and expression quantitative trait loci studi
     sc:name "CAS" ;
     sc:url "https://github.com/Kingsford-Group/CAS_code" .
 
+<https://bio.tools/cas_common_chemistry> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_2258,
+        edam:topic_2840,
+        edam:topic_3068,
+        edam:topic_3314 ;
+    sc:citation <https://doi.org/10.1021/ACS.JCIM.2C00268>,
+        "pmcid:PMC9199008",
+        "pubmed:35559614" ;
+    sc:description "CAS Common Chemistry is an open web resource that provides access to reliable chemical substance information for the scientific community." ;
+    sc:featureList edam:operation_2421,
+        edam:operation_2422 ;
+    sc:isAccessibleForFree true ;
+    sc:license "CC-BY-NC-4.0" ;
+    sc:name "CAS Common Chemistry" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://commonchemistry.cas.org/" .
+
 <https://bio.tools/cas_image_analysis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3382,
@@ -124951,7 +114797,7 @@ Large-scale genome-wide association and expression quantitative trait loci studi
     biotools:primaryContact "Karolina Nurzynska" .
 
 <https://bio.tools/casas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite",
         "Web application" ;
     sc:applicationSubCategory edam:topic_3678 ;
@@ -124966,8 +114812,30 @@ Large-scale genome-wide association and expression quantitative trait loci studi
     sc:url "http://bbisr.shinyapps.winship.emory.edu/CASAS/" ;
     biotools:primaryContact "Maintainer- Manali Rupji" .
 
+<https://bio.tools/casava> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application",
+        "Workbench" ;
+    sc:applicationSubCategory edam:topic_0634,
+        edam:topic_3173,
+        edam:topic_3390,
+        edam:topic_3474,
+        edam:topic_3517 ;
+    sc:citation <https://doi.org/10.1093/BIB/BBAB438>,
+        "pubmed:34643213" ;
+    sc:description "CASAVA provides a comprehensive annotation of disease risk in 24 disease categories for any non-coding variant in the genome." ;
+    sc:featureList edam:operation_2422,
+        edam:operation_3225,
+        edam:operation_3226 ;
+    sc:name "CASAVA" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <http://zhanglabtools.org/CASAVA/tutorial> ;
+    sc:url "http://zhanglabtools.org/CASAVA" .
+
 <https://bio.tools/casboundary> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0798,
@@ -124984,7 +114852,7 @@ Large-scale genome-wide association and expression quantitative trait loci studi
     sc:url "https://github.com/BackofenLab/Casboundary" .
 
 <https://bio.tools/cascade> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2259 ;
@@ -124999,7 +114867,7 @@ Large-scale genome-wide association and expression quantitative trait loci studi
     sc:url "http://www-math.u-strasbg.fr/genpred/spip.php?article3" .
 
 <https://bio.tools/cascade_visualization> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_2640,
@@ -125019,7 +114887,7 @@ Large-scale genome-wide association and expression quantitative trait loci studi
     biotools:primaryContact <http://orcid.org/0000-0003-2140-7590> .
 
 <https://bio.tools/cascollect> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0114,
@@ -125040,7 +114908,7 @@ Large-scale genome-wide association and expression quantitative trait loci studi
     sc:url "https://github.com/sandialabs/CasCollect" .
 
 <https://bio.tools/caserel> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_3344,
         edam:topic_3452 ;
@@ -125054,7 +114922,7 @@ Large-scale genome-wide association and expression quantitative trait loci studi
     biotools:primaryContact "Pangyu Teng" .
 
 <https://bio.tools/casnp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_2640,
@@ -125074,8 +114942,31 @@ Large-scale genome-wide association and expression quantitative trait loci studi
     sc:url "http://cistrome.dfci.harvard.edu/CaSNP/" ;
     biotools:primaryContact "X. Shirley Liu" .
 
+<https://bio.tools/casowary> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0128,
+        edam:topic_0203,
+        edam:topic_0659,
+        edam:topic_3474,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.1186/S12864-022-08366-2>,
+        "pmcid:PMC8889671",
+        "pubmed:35236300" ;
+    sc:description "CASowary is a command line machine learning tool written in Python 3.6.8 for predicting the efficacy of sgRNAs for CRISPR Cas13 and other transcript targeting systems." ;
+    sc:featureList edam:operation_3096,
+        edam:operation_3222,
+        edam:operation_3901 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "CASowary" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/Janga-Lab/CASowary" .
+
 <https://bio.tools/casp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3382,
@@ -125090,7 +114981,7 @@ Large-scale genome-wide association and expression quantitative trait loci studi
     sc:url "http://casplab.com/" .
 
 <https://bio.tools/caspar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3053,
@@ -125105,7 +114996,7 @@ Large-scale genome-wide association and expression quantitative trait loci studi
     biotools:primaryContact "Richa Agarwala" .
 
 <https://bio.tools/casper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3320 ;
@@ -125125,7 +115016,7 @@ Large-scale genome-wide association and expression quantitative trait loci studi
     biotools:primaryContact "David Rossell" .
 
 <https://bio.tools/casper_merging> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0102,
@@ -125141,7 +115032,7 @@ Large-scale genome-wide association and expression quantitative trait loci studi
     sc:url "http://best.snu.ac.kr/casper" .
 
 <https://bio.tools/caspr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0621,
@@ -125158,7 +115049,7 @@ Large-scale genome-wide association and expression quantitative trait loci studi
     sc:url "http://igs-server.cnrs-mrs.fr/Caspr/index.cgi" .
 
 <https://bio.tools/caspr-rna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0625,
         edam:topic_0659,
@@ -125172,7 +115063,7 @@ Large-scale genome-wide association and expression quantitative trait loci studi
     sc:url "https://judithbergada.github.io/CASPR/" .
 
 <https://bio.tools/caspredict> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0121,
@@ -125196,7 +115087,7 @@ Large-scale genome-wide association and expression quantitative trait loci studi
     sc:url "http://i.uestc.edu.cn/caspredict/cgi-bin/CASPredict.pl" .
 
 <https://bio.tools/casq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0602,
@@ -125214,7 +115105,7 @@ Large-scale genome-wide association and expression quantitative trait loci studi
     sc:url "https://github.com/soli/casq" .
 
 <https://bio.tools/cass> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3524 ;
@@ -125228,7 +115119,7 @@ Large-scale genome-wide association and expression quantitative trait loci studi
     sc:url "https://liberles.cst.temple.edu/Software/CASS/index.html" .
 
 <https://bio.tools/cassis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0654,
@@ -125244,7 +115135,7 @@ Large-scale genome-wide association and expression quantitative trait loci studi
     biotools:primaryContact "Dr. Ekaterina Shelest" .
 
 <https://bio.tools/cassys> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0602,
@@ -125261,7 +115152,7 @@ Large-scale genome-wide association and expression quantitative trait loci studi
     sc:url "http://www.zbh.uni-hamburg.de/en/research/application-oriented-bioinformatics/researchprojects/cassys.html" .
 
 <https://bio.tools/cast-hsroc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2269 ;
     sc:citation <https://doi.org/10.7759/CUREUS.13257>,
@@ -125274,8 +115165,27 @@ Large-scale genome-wide association and expression quantitative trait loci studi
     sc:url "https://youkiti.shinyapps.io/CAST-HSROC/" ;
     biotools:primaryContact <http://orcid.org/0000-0002-2539-1031> .
 
+<https://bio.tools/cast-r> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0780,
+        edam:topic_3169 ;
+    sc:citation <https://doi.org/10.1093/PLPHYS/KIAC121>,
+        "pubmed:35294034" ;
+    sc:description "An application to visualize circadian and heat stress-responsive genes in plants." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_0531,
+        edam:operation_3925 ;
+    sc:license "Not licensed" ;
+    sc:name "CAST-R" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://nagellab.shinyapps.io/CASTR-v1/" .
+
 <https://bio.tools/castle> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0625,
@@ -125292,7 +115202,7 @@ Large-scale genome-wide association and expression quantitative trait loci studi
     sc:url "https://gitlab.bham.ac.uk/spillf-leukocytes-image-analysis/castle" .
 
 <https://bio.tools/castle-lethals> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0621,
@@ -125306,7 +115216,7 @@ Large-scale genome-wide association and expression quantitative trait loci studi
     sc:url "https://ramanlab.github.io/CASTLE/" .
 
 <https://bio.tools/castor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0637,
@@ -125325,7 +115235,7 @@ Large-scale genome-wide association and expression quantitative trait loci studi
     biotools:primaryContact "Stilianos Louca" .
 
 <https://bio.tools/castp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -125350,8 +115260,20 @@ Large-scale genome-wide association and expression quantitative trait loci studi
     sc:url "http://sts.bioe.uic.edu/castp/" ;
     biotools:primaryContact "Support" .
 
+<https://bio.tools/casualpath> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:description "a tool for pathway analysis of proteomic and phosphoproteomic datasets" ;
+    sc:isAccessibleForFree true ;
+    sc:license "LGPL-3.0" ;
+    sc:name "CausalPath" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareVersion "1.2.0" ;
+    sc:url "https://github.com/PathwayAndDataAnalysis/causalpath" .
+
 <https://bio.tools/cat_bins> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0637,
@@ -125371,7 +115293,7 @@ Large-scale genome-wide association and expression quantitative trait loci studi
     biotools:primaryContact "Bas E. Dutilh" .
 
 <https://bio.tools/cata> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_2640,
@@ -125387,7 +115309,7 @@ Large-scale genome-wide association and expression quantitative trait loci studi
     sc:url "http://bio.licpathway.net/cata/" .
 
 <https://bio.tools/catalysis-hub> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_2258,
         edam:topic_3314,
@@ -125404,7 +115326,7 @@ Large-scale genome-wide association and expression quantitative trait loci studi
     sc:url "https://www.catalysis-hub.org" .
 
 <https://bio.tools/catalyst> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269 ;
     sc:description "Mass cytometry uses heavy metal isotopes rather than fluorescent tags as reporters to label antibodies, thereby substantially decreasing spectral overlap and allowing for examination of over 50 parameters at the single cell level. Cytometry dATa anALYSis Tools is designed to provide a pipeline for preprocessing of cytometry data, including i) normalization using bead standards, ii) single-cell deconvolution, and iii) bead-based compensation." ;
@@ -125421,7 +115343,7 @@ Large-scale genome-wide association and expression quantitative trait loci studi
     biotools:primaryContact "Helena L. Crowell" .
 
 <https://bio.tools/catalytic_site_identification> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
@@ -125443,8 +115365,34 @@ Large-scale genome-wide association and expression quantitative trait loci studi
         "Mac" ;
     sc:url "https://catsid.llnl.gov/" .
 
+<https://bio.tools/catana_visualization> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0077,
+        edam:topic_0130,
+        edam:topic_0154,
+        edam:topic_0176,
+        edam:topic_3297 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAC350>,
+        "pmcid:PMC9252799",
+        "pubmed:35544315" ;
+    sc:description "A user-friendly, web-based modelling tool to design and manipulate proteins, DNA and DNA nanostructures. State-of-the-art features from standalone tools for modelling, manipulation, and visualization of complex molecular systems" ;
+    sc:featureList edam:operation_0244,
+        edam:operation_0337,
+        edam:operation_0477,
+        edam:operation_2476,
+        edam:operation_4008 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "Catana" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <http://catana.ait.ac.at/manual/> ;
+    sc:url "http://catana.ait.ac.at/" .
+
 <https://bio.tools/catapult> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2259,
@@ -125459,7 +115407,7 @@ Large-scale genome-wide association and expression quantitative trait loci studi
     biotools:primaryContact "Edward Marcotte" .
 
 <https://bio.tools/catastrophy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0621,
@@ -125479,7 +115427,7 @@ Large-scale genome-wide association and expression quantitative trait loci studi
     sc:url "https://github.com/ccdmb/catastrophy" .
 
 <https://bio.tools/catch> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3169,
         edam:topic_3179 ;
@@ -125496,7 +115444,7 @@ Large-scale genome-wide association and expression quantitative trait loci studi
     biotools:primaryContact "Fiona Nielsen" .
 
 <https://bio.tools/catchall> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_2269,
@@ -125517,54 +115465,48 @@ Large-scale genome-wide association and expression quantitative trait loci studi
 
 <https://bio.tools/catdb> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2388" ;
-            sc:name "TAIR accession (At gene)" ;
-            sc:sameAs "http://edamontology.org/data_2388" ],
+            sc:additionalType "http://edamontology.org/data_0842" ;
+            sc:name "Identifier" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2388" ;
-            sc:name "TAIR accession (At gene)" ;
-            sc:sameAs "http://edamontology.org/data_2388" ],
+            sc:additionalType "http://edamontology.org/data_2388" ;
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-            sc:identifier "http://edamontology.org/data_2388" ;
-            sc:name "TAIR accession (At gene)" ;
-            sc:sameAs "http://edamontology.org/data_2388" ],
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-            sc:identifier "http://edamontology.org/data_0842" ;
-            sc:name "Identifier" ;
-            sc:sameAs "http://edamontology.org/data_0842" ],
+            sc:additionalType "http://edamontology.org/data_2388" ;
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         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0842" ;
-            sc:name "Identifier" ;
-            sc:sameAs "http://edamontology.org/data_0842" ],
+            sc:additionalType "http://edamontology.org/data_2388" ;
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-            sc:name "TAIR accession (At gene)" ;
-            sc:sameAs "http://edamontology.org/data_2388" ] ;
+            sc:additionalType "http://edamontology.org/data_2388" ;
+            sc:name "TAIR accession (At gene)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2093" ;
-            sc:name "Data reference" ;
-            sc:sameAs "http://edamontology.org/data_2093" ],
+            sc:additionalType "http://edamontology.org/data_0916" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Gene report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0916" ;
-            sc:name "Gene report" ;
-            sc:sameAs "http://edamontology.org/data_0916" ],
+            sc:additionalType "http://edamontology.org/data_0916" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Gene report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2093" ;
-            sc:name "Data reference" ;
-            sc:sameAs "http://edamontology.org/data_2093" ],
+            sc:additionalType "http://edamontology.org/data_0916" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Gene report" ],
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-            sc:identifier "http://edamontology.org/data_0916" ;
-            sc:name "Gene report" ;
-            sc:sameAs "http://edamontology.org/data_0916" ],
+            sc:additionalType "http://edamontology.org/data_2093" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Data reference" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0916" ;
-            sc:name "Gene report" ;
-            sc:sameAs "http://edamontology.org/data_0916" ],
+            sc:additionalType "http://edamontology.org/data_0916" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Gene report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0916" ;
-            sc:name "Gene report" ;
-            sc:sameAs "http://edamontology.org/data_0916" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2093" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Data reference" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0623,
         edam:topic_0780 ;
@@ -125581,33 +115523,20 @@ Large-scale genome-wide association and expression quantitative trait loci studi
     sc:softwareHelp <http://urgv.evry.inra.fr/cgi-bin/projects/CATdb/catdb_help.pl?docInfo=CATdb_explore.txt&title=Consult> ;
     sc:url "http://urgv.evry.inra.fr/CATdb" .
 
-<https://bio.tools/categorical_kernel> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0154,
-        edam:topic_0199,
-        edam:topic_3474 ;
-    sc:citation <https://doi.org/10.1186/S12859-019-2991-2>,
-        "pmcid:PMC6668108",
-        "pubmed:31362714" ;
-    sc:description "> LOW CONFIDENCE! | HIV drug resistance prediction with weighted categorical kernel functions | BACKGROUND:Antiretroviral drugs are a very effective therapy against HIV infection. However, the high mutation rate of HIV permits the emergence of variants that can be resistant to the drug treatment. Predicting drug resistance to previously unobserved variants is therefore very important for an optimum medical treatment. In this paper, we propose the use of weighted categorical kernel functions to predict drug resistance from virus sequence data. These kernel functions are very simple to implement and are able to take into account HIV data particularities, such as allele mixtures, and to weigh the different importance of each protein residue, as it is known that not all positions contribute equally to the resistance" ;
-    sc:featureList edam:operation_3482,
-        edam:operation_3891 ;
-    sc:name "categorical kernel" ;
-    sc:url "https://bitbucket.org/elies_ramon/catkern" .
-
 <https://bio.tools/category> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Gene expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ] ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_2058" ;
+            sc:name "Gene expression data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ],
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Plot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1636" ;
-            sc:name "Heat map" ;
-            sc:sameAs "http://edamontology.org/data_1636" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1636" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Heat map" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0091,
@@ -125627,18 +115556,18 @@ Large-scale genome-wide association and expression quantitative trait loci studi
 
 <https://bio.tools/categorycompare> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Gene expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ] ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_2058" ;
+            sc:name "Gene expression data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1669" ;
-            sc:name "P-value" ;
-            sc:sameAs "http://edamontology.org/data_1669" ],
+            sc:additionalType "http://edamontology.org/data_1669" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "P-value" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Pathway or network" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -125659,7 +115588,7 @@ Large-scale genome-wide association and expression quantitative trait loci studi
     biotools:primaryContact <http://orcid.org/0000-0001-8141-7788> .
 
 <https://bio.tools/cath> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -125680,7 +115609,7 @@ Large-scale genome-wide association and expression quantitative trait loci studi
     biotools:primaryContact "I. Sillitoe" .
 
 <https://bio.tools/catkern> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0199,
         edam:topic_3474 ;
@@ -125694,7 +115623,7 @@ Large-scale genome-wide association and expression quantitative trait loci studi
     sc:url "https://bitbucket.org/elies_ramon/catkern" .
 
 <https://bio.tools/catkinas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0769,
@@ -125708,7 +115637,7 @@ Large-scale genome-wide association and expression quantitative trait loci studi
     sc:url "https://www.catkinas.com/" .
 
 <https://bio.tools/catkls> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0821,
@@ -125727,7 +115656,7 @@ Enzymes are catalysts in biochemical reactions that, by definition, increase rat
     sc:url "https://plattlab.shinyapps.io/catKLS/" .
 
 <https://bio.tools/catnip> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0634,
@@ -125750,7 +115679,7 @@ The CATNIP repurposing network can be searched either by specifying one or more
     sc:url "http://www.github.com/coryandar/CATNIP" .
 
 <https://bio.tools/cato> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0199,
@@ -125768,7 +115697,7 @@ The CATNIP repurposing network can be searched either by specifying one or more
     biotools:primaryContact "Peter LaPan" .
 
 <https://bio.tools/cato_Connectivity> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3304,
@@ -125787,7 +115716,7 @@ The CATNIP repurposing network can be searched either by specifying one or more
     sc:url "http://www.dutchconnectomelab.nl/CATO" .
 
 <https://bio.tools/catrapid> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0099,
@@ -125806,7 +115735,7 @@ The CATNIP repurposing network can be searched either by specifying one or more
     biotools:primaryContact "Gian Gaetano Tartaglia" .
 
 <https://bio.tools/catrapid_signature> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0099,
@@ -125820,7 +115749,7 @@ The CATNIP repurposing network can be searched either by specifying one or more
     biotools:primaryContact "Gian Gaetano Tartaglia" .
 
 <https://bio.tools/cats> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite",
         "Web application" ;
     sc:applicationSubCategory edam:topic_3053 ;
@@ -125836,14 +115765,14 @@ The CATNIP repurposing network can be searched either by specifying one or more
 
 <https://bio.tools/causal-extractor> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ] ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:encodingFormat "http://edamontology.org/format_3617" ;
+            sc:name "Pathway or network" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:encodingFormat "http://edamontology.org/format_3619" ;
+            sc:name "Pathway or network" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "Extraction of causal molecular interactions from the Reactome database." ;
     sc:featureList edam:operation_2423,
         edam:operation_3928 ;
@@ -125854,14 +115783,13 @@ The CATNIP repurposing network can be searched either by specifying one or more
 
 <https://bio.tools/causalbuilder> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3671" ;
-            sc:name "Text" ;
-            sc:sameAs "http://edamontology.org/data_3671" ] ;
+            sc:additionalType "http://edamontology.org/data_3671" ;
+            sc:name "Text" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3779" ;
-            sc:name "Annotated text" ;
-            sc:sameAs "http://edamontology.org/data_3779" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3779" ;
+            sc:encodingFormat "http://edamontology.org/format_3242" ;
+            sc:name "Annotated text" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602 ;
     sc:description "The causalBuilder is a prototype web application for the curation of molecular interaction causal statements. This interface takes advantage of the VSM framework (https://github.com/vsmjs/) to generate customized VSM-templates for the annotation of specific causal statements. The causal statements generated are compatible with the MI2CAST (Minimum Information about a Molecular Interaction Causal Statement) checklist that is available at https://github.com/MI2CAST/MI2CAST." ;
@@ -125877,7 +115805,7 @@ The CATNIP repurposing network can be searched either by specifying one or more
     sc:url "https://mi2cast.github.io/causalBuilder/" .
 
 <https://bio.tools/causaldag> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0602,
@@ -125893,7 +115821,7 @@ The CATNIP repurposing network can be searched either by specifying one or more
     sc:url "http://uhlerlab.github.io/causaldag" .
 
 <https://bio.tools/causalizer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0218,
         edam:topic_0602 ;
@@ -125912,7 +115840,7 @@ The CATNIP repurposing network can be searched either by specifying one or more
     sc:url "https://github.com/fjmurguzur/causalizeR" .
 
 <https://bio.tools/causalmgm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3053,
@@ -125930,7 +115858,7 @@ The CATNIP repurposing network can be searched either by specifying one or more
     sc:url "http://causalmgm.org/" .
 
 <https://bio.tools/causalr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0602 ;
@@ -125950,10 +115878,10 @@ The CATNIP repurposing network can be searched either by specifying one or more
 
 <https://bio.tools/causaltrail> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:encodingFormat "http://edamontology.org/format_3619" ;
+            sc:name "Pathway or network" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0602 ;
@@ -125970,14 +115898,14 @@ The CATNIP repurposing network can be searched either by specifying one or more
 
 <https://bio.tools/caver> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ] ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein structure" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1537" ;
-            sc:name "Protein structure report" ;
-            sc:sameAs "http://edamontology.org/data_1537" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1537" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Protein structure report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_2814 ;
@@ -126029,18 +115957,18 @@ The CATNIP repurposing network can be searched either by specifying one or more
 
 <https://bio.tools/caver_analyst> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3870" ;
-            sc:name "Trajectory data" ;
-            sc:sameAs "http://edamontology.org/data_3870" ],
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein structure" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ] ;
+            sc:additionalType "http://edamontology.org/data_3870" ;
+            sc:encodingFormat "http://edamontology.org/format_3910" ;
+            sc:name "Trajectory data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1537" ;
-            sc:name "Protein structure report" ;
-            sc:sameAs "http://edamontology.org/data_1537" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1537" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Protein structure report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_2814 ;
@@ -126089,10 +116017,10 @@ The CATNIP repurposing network can be searched either by specifying one or more
 
 <https://bio.tools/caver_pymol_plugin> a sc:SoftwareApplication ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1537" ;
-            sc:name "Protein structure report" ;
-            sc:sameAs "http://edamontology.org/data_1537" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1537" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Protein structure report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Plug-in" ;
     sc:applicationSubCategory edam:topic_0078,
@@ -126146,14 +116074,14 @@ The CATNIP repurposing network can be searched either by specifying one or more
 
 <https://bio.tools/caver_web> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ] ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein structure" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1537" ;
-            sc:name "Protein structure report" ;
-            sc:sameAs "http://edamontology.org/data_1537" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1537" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Protein structure report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_2814 ;
@@ -126194,18 +116122,18 @@ The CATNIP repurposing network can be searched either by specifying one or more
 
 <https://bio.tools/caverdock> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ],
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein structure" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1463" ;
-            sc:name "Small molecule structure" ;
-            sc:sameAs "http://edamontology.org/data_1463" ] ;
+            sc:additionalType "http://edamontology.org/data_1463" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Small molecule structure" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1537" ;
-            sc:name "Protein structure report" ;
-            sc:sameAs "http://edamontology.org/data_1537" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1537" ;
+            sc:encodingFormat "http://edamontology.org/format_1957" ;
+            sc:name "Protein structure report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0154,
@@ -126246,8 +116174,30 @@ The CATNIP repurposing network can be searched either by specifying one or more
     sc:url "https://loschmidt.chemi.muni.cz/caverdock/" ;
     biotools:primaryContact "CaverDock team" .
 
+<https://bio.tools/caves> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Desktop application" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_2830,
+        edam:topic_3068,
+        edam:topic_3299,
+        edam:topic_3966 ;
+    sc:citation <https://doi.org/10.3390/V14061152>,
+        "pmcid:PMC9227564",
+        "pubmed:35746624" ;
+    sc:description "CAVES (Comparative Analysis of Variant Epitope Sequences) is an tool created to automate comparative epitope analyses." ;
+    sc:featureList edam:operation_0416,
+        edam:operation_2421,
+        edam:operation_3197,
+        edam:operation_3431 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Apache-2.0" ;
+    sc:name "CAVES" ;
+    sc:operatingSystem "Windows" ;
+    sc:url "https://github.com/connor-lowey/CAVES" .
+
 <https://bio.tools/caviar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_2269,
@@ -126263,7 +116213,7 @@ The CATNIP repurposing network can be searched either by specifying one or more
     biotools:primaryContact "Farhad Hormozdiari" .
 
 <https://bio.tools/caviar-cavity> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0166,
@@ -126286,7 +116236,7 @@ The CATNIP repurposing network can be searched either by specifying one or more
         <http://orcid.org/0000-0003-2536-7485> .
 
 <https://bio.tools/cavityplus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
@@ -126301,16 +116251,48 @@ The CATNIP repurposing network can be searched either by specifying one or more
     sc:softwareHelp <http://162.105.160.28:2017/cavityplus/tutorial.php> ;
     sc:url "http://repharma.pku.edu.cn/cavityplus" .
 
+<https://bio.tools/cavityspace> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1009" ;
+            sc:name "Protein name" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2299" ;
+            sc:name "Gene name" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2764" ;
+            sc:name "Protein name (UniProt)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0080,
+        edam:topic_0082,
+        edam:topic_0121,
+        edam:topic_0154,
+        edam:topic_3534 ;
+    sc:citation <https://doi.org/10.3390/biom12070967>,
+        "pmcid:PMC9312471",
+        "pubmed:35883523" ;
+    sc:description "A database of potential ligand binding sites in the human proteome." ;
+    sc:featureList edam:operation_0474,
+        edam:operation_3897,
+        edam:operation_4009 ;
+    sc:isAccessibleForFree true ;
+    sc:name "CavitySpace" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://www.pkumdl.cn:8000/cavityspace/" .
+
 <https://bio.tools/caw> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3497" ;
-            sc:name "DNA sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_3497" ] ;
+            sc:additionalType "http://edamontology.org/data_3497" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "DNA sequence (raw)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence variations" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0622,
@@ -126334,7 +116316,7 @@ The CATNIP repurposing network can be searched either by specifying one or more
     biotools:primaryContact <https://orcid.org/0000-0003-2827-9261> .
 
 <https://bio.tools/cayenne> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2259,
         edam:topic_3307,
@@ -126349,14 +116331,13 @@ The CATNIP repurposing network can be searched either by specifying one or more
 
 <https://bio.tools/cazy> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2702" ;
-            sc:name "Enzyme ID (CAZy)" ;
-            sc:sameAs "http://edamontology.org/data_2702" ] ;
+            sc:additionalType "http://edamontology.org/data_2702" ;
+            sc:name "Enzyme ID (CAZy)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0896" ;
-            sc:name "Protein report" ;
-            sc:sameAs "http://edamontology.org/data_0896" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0896" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Protein report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0821 ;
     sc:citation <https://doi.org/10.1093/nar/gkt1178>,
@@ -126373,8 +116354,32 @@ The CATNIP repurposing network can be searched either by specifying one or more
     sc:url "http://www.cazy.org/" ;
     biotools:primaryContact "CAZy Support" .
 
+<https://bio.tools/cb-dock2> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0209,
+        edam:topic_0769,
+        edam:topic_2258,
+        edam:topic_2275 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAC394>,
+        "pmcid:PMC9252749",
+        "pubmed:35609983" ;
+    sc:description "CB-Dock2  is an improved version of the CB-Dock server for protein-ligand blind docking, integrating cavity detection, docking and homologous template fitting." ;
+    sc:featureList edam:operation_0482,
+        edam:operation_2575,
+        edam:operation_3899,
+        edam:operation_4009 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "CB-Dock2" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://cadd.labshare.cn/cb-dock2/php/manual.php> ;
+    sc:url "https://cadd.labshare.cn/cb-dock2/" .
+
 <https://bio.tools/cba> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078 ;
     sc:description "CBA (Consistency Based Alignment) builds multiple structure alignments from pairwise superpositions using consistency as a driving force.The software harnesses the information contained within regions that are consistently aligned among a set of pairwise superpositions in order to realign pairs of proteins through both global and local refinement methods. It then constructs a multiple alignment that is maximally consistent with the improved pairwise alignments." ;
@@ -126386,7 +116391,7 @@ The CATNIP repurposing network can be searched either by specifying one or more
     sc:url "http://motif.stanford.edu/distributions/cba/" .
 
 <https://bio.tools/cbaf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3053,
         edam:topic_3170,
@@ -126406,7 +116411,7 @@ The CATNIP repurposing network can be searched either by specifying one or more
     biotools:primaryContact "Arman Shahrisa" .
 
 <https://bio.tools/cbarbel> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0621,
@@ -126429,7 +116434,7 @@ The CATNIP repurposing network can be searched either by specifying one or more
     biotools:primaryContact "Zhanjiang Liu" .
 
 <https://bio.tools/cbcanalyzer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3293 ;
@@ -126444,7 +116449,7 @@ The CATNIP repurposing network can be searched either by specifying one or more
     sc:url "http://cbcanalyzer.bioapps.biozentrum.uni-wuerzburg.de/cgi-bin/index.php" .
 
 <https://bio.tools/cbcr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0654,
@@ -126464,7 +116469,7 @@ The CATNIP repurposing network can be searched either by specifying one or more
     biotools:primaryContact "Oluwatosin Oluwadare" .
 
 <https://bio.tools/cbct-backprojection> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3306,
         edam:topic_3344,
@@ -126481,8 +116486,31 @@ The CATNIP repurposing network can be searched either by specifying one or more
     sc:url "https://www.mathworks.com/matlabcentral/fileexchange/35548-3d-cone-beam-ct-cbct-projection-backprojection-fdk-iterative-reconstruction-matlab-examples" ;
     biotools:primaryContact "Kyungsang Kim" .
 
+<https://bio.tools/cbea> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_3068,
+        edam:topic_3170,
+        edam:topic_3673,
+        edam:topic_3697 ;
+    sc:citation <https://doi.org/10.1371/JOURNAL.PCBI.1010091>,
+        "pmcid:PMC9154102",
+        "pubmed:35584140" ;
+    sc:description "R package for performing enrichment analysis for microbiome relative abundance data using the CBEA approach." ;
+    sc:featureList edam:operation_2238,
+        edam:operation_2436,
+        edam:operation_3436,
+        edam:operation_3935 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "CBEA" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://www.github.com/qpmnguyen/CBEA" .
+
 <https://bio.tools/cblaster> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0769,
@@ -126498,8 +116526,26 @@ The CATNIP repurposing network can be searched either by specifying one or more
     sc:name "cblaster" ;
     sc:url "http://github.com/gamcil/cblaster" .
 
+<https://bio.tools/cblrr> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Script" ;
+    sc:applicationSubCategory edam:topic_0099,
+        edam:topic_2229,
+        edam:topic_3170,
+        edam:topic_3308 ;
+    sc:citation <https://doi.org/10.1093/BIB/BBAC300>,
+        "pubmed:35870203" ;
+    sc:description "Cauchy-based bounded constraint low-rank representation (CBLRR), is a low-rank representation-based method by introducing bounded nuclear norm regulation and cauchy loss function (CLF) to achieve better clustering in single-cell RNA-seq data." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_3432,
+        edam:operation_3435 ;
+    sc:license "Not licensed" ;
+    sc:name "CBLRR" ;
+    sc:url "https://github.com/Ginnay/CBLRR" .
+
 <https://bio.tools/cbmos> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Workbench" ;
     sc:applicationSubCategory edam:topic_2229,
@@ -126514,8 +116560,29 @@ The CATNIP repurposing network can be searched either by specifying one or more
     sc:softwareHelp <https://somathias.github.io/cbmos/> ;
     sc:url "https://github.com/somathias/cbmos" .
 
+<https://bio.tools/cbnplot> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library",
+        "Workflow" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0602,
+        edam:topic_3068,
+        edam:topic_3170 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC175>,
+        "pubmed:35333314" ;
+    sc:description "CBNplot: Bayesian network plot for the enrichment analysis results." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_1781,
+        edam:operation_3223,
+        edam:operation_3501 ;
+    sc:name "CBNplot" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://cbnplot.com" .
+
 <https://bio.tools/cbo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_2229,
@@ -126531,7 +116598,7 @@ The CATNIP repurposing network can be searched either by specifying one or more
     sc:url "http://cbo.biocomplexity.indiana.edu/" .
 
 <https://bio.tools/cbp-jmf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0634,
@@ -126548,8 +116615,33 @@ The CATNIP repurposing network can be searched either by specifying one or more
     sc:name "CBP-JMF" ;
     sc:url "https://github.com/wangbingbo2019/CBP-JMF" .
 
+<https://bio.tools/cbpmanager> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0769,
+        edam:topic_2640,
+        edam:topic_3063,
+        edam:topic_3263,
+        edam:topic_3421 ;
+    sc:citation <https://doi.org/10.1186/S12911-021-01719-Z>,
+        "pmcid:PMC8686377",
+        "pubmed:34930224" ;
+    sc:description "This R package provides an R Shiny application that enables the user to generate, manage, and edit data and metadata files suitable for the import in cBioPortal for Cancer Genomics." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_2422,
+        edam:operation_3096 ;
+    sc:isAccessibleForFree true ;
+    sc:license "AGPL-3.0" ;
+    sc:name "cbpManager" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://arsenij-ust.github.io/cbpManager/> ;
+    sc:url "https://bioconductor.org/packages/cbpManager/" .
+
 <https://bio.tools/cbptools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0749,
@@ -126567,7 +116659,7 @@ The CATNIP repurposing network can be searched either by specifying one or more
     sc:url "https://github.com/inm7/cbptools" .
 
 <https://bio.tools/cbs_das_protein_viewer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0157,
@@ -126590,7 +116682,7 @@ The CATNIP repurposing network can be searched either by specifying one or more
     biotools:primaryContact "Pall Olason" .
 
 <https://bio.tools/cbspredict> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2814 ;
     sc:citation <https://doi.org/10.1186/1472-6807-10-23> ;
@@ -126603,8 +116695,24 @@ The CATNIP repurposing network can be searched either by specifying one or more
         "Windows" ;
     sc:url "http://doxey.uwaterloo.ca/cgi-bin/cbsPredict.cgi" .
 
+<https://bio.tools/cbtope> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:citation <https://doi.org/10.1186/1745-7580-6-6>,
+        "pmcid:PMC2974664",
+        "pubmed:20961417" ;
+    sc:description "Conformational B cell epitope prediction" ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "cbtope" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/cbtope/index.php> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/cbtope/index.php" .
+
 <https://bio.tools/ccancer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -126626,14 +116734,13 @@ The CATNIP repurposing network can be searched either by specifying one or more
 
 <https://bio.tools/ccap> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2778" ;
-            sc:name "CCAP strain number" ;
-            sc:sameAs "http://edamontology.org/data_2778" ] ;
+            sc:additionalType "http://edamontology.org/data_2778" ;
+            sc:name "CCAP strain number" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0963" ;
-            sc:name "Cell line report" ;
-            sc:sameAs "http://edamontology.org/data_0963" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0963" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Cell line report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_2229 ;
     sc:citation <https://doi.org/10.1016/j.gene.2007.05.018> ;
@@ -126646,8 +116753,32 @@ The CATNIP repurposing network can be searched either by specifying one or more
     sc:softwareHelp <https://www.ccap.ac.uk/index.htm> ;
     sc:url "http://www.ccap.ac.uk/index.htm" .
 
+<https://bio.tools/ccas> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0602,
+        edam:topic_2640,
+        edam:topic_3379,
+        edam:topic_3958 ;
+    sc:citation <https://doi.org/10.3389/FGENE.2022.956781>,
+        "pmcid:PMC9403316",
+        "pubmed:36035123" ;
+    sc:description "One-stop and comprehensive annotation system for individual cancer genome at multi-omics level." ;
+    sc:featureList edam:operation_0362,
+        edam:operation_1812,
+        edam:operation_2422,
+        edam:operation_2436 ;
+    sc:license "CC-BY-NC-3.0" ;
+    sc:name "CCAS" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://ngdc.cncb.ac.cn/ccas/#/home" .
+
 <https://bio.tools/ccat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3169,
         edam:topic_3176 ;
@@ -126663,7 +116794,7 @@ The CATNIP repurposing network can be searched either by specifying one or more
     sc:url "http://cmb.gis.a-star.edu.sg/ChIPSeq/paperCCAT.htm" .
 
 <https://bio.tools/ccb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3047 ;
@@ -126681,7 +116812,7 @@ The CATNIP repurposing network can be searched either by specifying one or more
     biotools:primaryContact "Jeremy E. Purvis" .
 
 <https://bio.tools/ccbmlib> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3047 ;
@@ -126697,7 +116828,7 @@ The CATNIP repurposing network can be searched either by specifying one or more
     sc:url "https://github.com/vogt-m/ccbmlib" .
 
 <https://bio.tools/cccp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_2814 ;
@@ -126713,7 +116844,7 @@ The CATNIP repurposing network can be searched either by specifying one or more
     biotools:primaryContact "G. Grigoryan" .
 
 <https://bio.tools/cccpp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_2814,
@@ -126729,7 +116860,7 @@ The CATNIP repurposing network can be searched either by specifying one or more
     biotools:primaryContact "Michel Petitjean" .
 
 <https://bio.tools/ccd2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0601,
@@ -126756,7 +116887,7 @@ The CATNIP repurposing network can be searched either by specifying one or more
     sc:url "https://ccd.rhpc.nki.nl" .
 
 <https://bio.tools/ccdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0659,
@@ -126771,19 +116902,42 @@ The CATNIP repurposing network can be searched either by specifying one or more
         edam:operation_2436 ;
     sc:name "CCDB" ;
     sc:softwareHelp <http://crdd.osdd.net/raghava/ccdb/CCDB_Help.ppt> ;
-    sc:url "http://crdd.osdd.net/raghava/ccdb" ;
+    sc:url "https://webs.iiitd.edu.in/raghava/ccdb" ;
     biotools:primaryContact "Dr. Subhash M. Agarwal" .
 
+<https://bio.tools/ccdb_chemical> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0602,
+        edam:topic_3172,
+        edam:topic_3390,
+        edam:topic_3407 ;
+    sc:citation <https://doi.org/10.1016/J.ENVINT.2022.107240>,
+        "pmcid:PMC9195052",
+        "pubmed:35461097" ;
+    sc:description "A database for exploring inter-chemical correlations in metabolomics and exposomics datasets." ;
+    sc:featureList edam:operation_3463,
+        edam:operation_3502,
+        edam:operation_3766,
+        edam:operation_3929 ;
+    sc:license "Not licensed" ;
+    sc:name "CCDB" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://www.ccdb.idsl.me" .
+
 <https://bio.tools/ccdigest> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1957" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -126792,20 +116946,8 @@ The CATNIP repurposing network can be searched either by specifying one or more
     sc:name "CCdigest" ;
     sc:url "https://www.massenspektrometrie.uni-osnabrueck.de/SoftwareTools/CC%3A%3Ain%20silico%20digestion.html" .
 
-<https://bio.tools/ccfDNA> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0625,
-        edam:topic_2640,
-        edam:topic_3168 ;
-    sc:citation <https://doi.org/10.1016/J.CANCERGEN.2019.06.004>,
-        "pubmed:31447070" ;
-    sc:description "> LOW CONFIDENCE! | > HOMEPAGE MISSING! | Non-invasive genotyping of metastatic colorectal cancer using circulating cell free DNA | Circulating cell-free DNA (ccfDNA) in plasma provides an easily accessible source of circulating tumor DNA (ctDNA) for detecting actionable genomic alterations that can be used to guide colorectal cancer (CRC) treatment and surveillance. The goal of this study was to test the feasibility of using a traditional amplicon-based next-generation sequencing (NGS) on Ion Torrent platform to detect low-frequency alleles in ctDNA and compare it with a digital NGS assay specifically designed to detect low-frequency variants (as low as 0.1%) to provide evidence for the standard care of CRC. The study cohort consisted of 48 CRC patients for whom matched samples of formalin-fixed, paraffin-embedded tumor tissue, plasma, and peripheral blood mononuclear cells were available" ;
-    sc:featureList edam:operation_3196,
-        edam:operation_3227 ;
-    sc:name "ccfDNA" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31447070" .
-
 <https://bio.tools/ccfind> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -126815,7 +116957,7 @@ The CATNIP repurposing network can be searched either by specifying one or more
     sc:url "https://www.massenspektrometrie.uni-osnabrueck.de/SoftwareTools/CC%3A%3Aintroduction.html" .
 
 <https://bio.tools/ccfindr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0114,
         edam:topic_3308 ;
@@ -126834,7 +116976,7 @@ The CATNIP repurposing network can be searched either by specifying one or more
     biotools:primaryContact "Jun Woo" .
 
 <https://bio.tools/ccfold> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
@@ -126854,14 +116996,14 @@ The CATNIP repurposing network can be searched either by specifying one or more
 
 <https://bio.tools/ccharppi> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2877" ;
-            sc:name "Protein complex" ;
-            sc:sameAs "http://edamontology.org/data_2877" ] ;
+            sc:additionalType "http://edamontology.org/data_2877" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein complex" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1772" ;
-            sc:name "Score" ;
-            sc:sameAs "http://edamontology.org/data_1772" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1772" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Score" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3332 ;
     sc:author <http://orcid.org/0000-0001-7786-2109>,
@@ -126884,14 +117026,14 @@ The CATNIP repurposing network can be searched either by specifying one or more
 
 <https://bio.tools/cchmmprof> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2974" ;
-            sc:name "Protein sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_2974" ] ;
+            sc:additionalType "http://edamontology.org/data_2974" ;
+            sc:encodingFormat "http://edamontology.org/format_1957" ;
+            sc:name "Protein sequence (raw)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0736,
@@ -126911,7 +117053,7 @@ The CATNIP repurposing network can be searched either by specifying one or more
     biotools:primaryContact "Piero Fariselli" .
 
 <https://bio.tools/cchsflow> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3063,
         edam:topic_3068,
@@ -126933,7 +117075,7 @@ The CATNIP repurposing network can be searched either by specifying one or more
     biotools:primaryContact <https://orcid.org/0000-0001-5571-8122> .
 
 <https://bio.tools/cci> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_2640,
@@ -126949,8 +117091,29 @@ The CATNIP repurposing network can be searched either by specifying one or more
     sc:softwareVersion "1.0" ;
     sc:url "https://github.com/pengfeeei/cci" .
 
+<https://bio.tools/ccimpute> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_2229,
+        edam:topic_3170,
+        edam:topic_3308,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.1186/S12859-022-04814-8>,
+        "pmcid:PMC9306045",
+        "pubmed:35869420" ;
+    sc:description "the ccImpute R package is an effective algorithm to correct for dropout events and improve downstream analysis of scRNA-seq data" ;
+    sc:featureList edam:operation_3432,
+        edam:operation_3436,
+        edam:operation_3557 ;
+    sc:license "Not licensed" ;
+    sc:name "ccImpute" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/khazum/ccImpute" .
+
 <https://bio.tools/ccip> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3169,
@@ -126963,7 +117126,7 @@ The CATNIP repurposing network can be searched either by specifying one or more
     sc:url "https://github.com/GaoLabXDU/CCIP" .
 
 <https://bio.tools/cclasso> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_2269,
@@ -126979,7 +117142,7 @@ The CATNIP repurposing network can be searched either by specifying one or more
     biotools:primaryContact "Minghua Deng" .
 
 <https://bio.tools/ccle_gdsc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -126995,7 +117158,7 @@ The CATNIP repurposing network can be searched either by specifying one or more
     biotools:primaryContact "Jason Roszik" .
 
 <https://bio.tools/ccmap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -127013,7 +117176,7 @@ The CATNIP repurposing network can be searched either by specifying one or more
     biotools:primaryContact "Alex Pickering" .
 
 <https://bio.tools/ccmdr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3063,
@@ -127030,7 +117193,7 @@ The CATNIP repurposing network can be searched either by specifying one or more
     sc:url "https://github.com/HoytWen/CCMDR" .
 
 <https://bio.tools/ccmed> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0625,
@@ -127048,7 +117211,7 @@ The CATNIP repurposing network can be searched either by specifying one or more
         "Fan Yang" .
 
 <https://bio.tools/ccmrd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0152,
         edam:topic_0593,
@@ -127064,8 +117227,27 @@ The CATNIP repurposing network can be searched either by specifying one or more
     sc:name "CCMRD" ;
     sc:url "http://www.ccmrd.org" .
 
+<https://bio.tools/ccne> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Library" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0625,
+        edam:topic_3519 ;
+    sc:citation <https://doi.org/10.1128/SPECTRUM.01000-22>,
+        "pubmed:35863018" ;
+    sc:description "Carbapenemase-encoding gene Copy Number Estimator (ccne) is a tool to estimate the copy number of AMR genes. It uses housekeeping gene as the reference and compares the count of reads that mapped to AMR genes with the count of reads that mapped to the reference gene." ;
+    sc:featureList edam:operation_3196,
+        edam:operation_3233,
+        edam:operation_3799 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "CCNE" ;
+    sc:operatingSystem "Linux" ;
+    sc:url "https://github.com/biojiang/ccne" .
+
 <https://bio.tools/ccnet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_3382,
         edam:topic_3474 ;
@@ -127080,7 +117262,7 @@ The CATNIP repurposing network can be searched either by specifying one or more
     sc:url "https://github.com/speedinghzl/CCNet" .
 
 <https://bio.tools/ccnetviz> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3315,
@@ -127096,7 +117278,7 @@ The CATNIP repurposing network can be searched either by specifying one or more
     sc:url "http://helikarlab.github.io/ccNetViz/" .
 
 <https://bio.tools/ccnmf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3170,
@@ -127110,8 +117292,39 @@ The CATNIP repurposing network can be searched either by specifying one or more
     sc:name "CCNMF" ;
     sc:url "https://github.com/XQBai/CCNMF" .
 
+<https://bio.tools/ccnwheat> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1176" ;
+            sc:name "GO concept ID" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1893" ;
+            sc:name "Locus ID" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2757" ;
+            sc:name "Pfam domain name" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0602,
+        edam:topic_0659,
+        edam:topic_0749,
+        edam:topic_3173,
+        edam:topic_3308 ;
+    sc:citation <https://doi.org/10.1016/j.gpb.2022.04.007>,
+        "pubmed:35660007" ;
+    sc:description "A Database for Comparing Co-expression Networks Analysis of Allohexaploid Wheat and Its Progenitors." ;
+    sc:featureList edam:operation_2436,
+        edam:operation_3463,
+        edam:operation_3792 ;
+    sc:isAccessibleForFree true ;
+    sc:name "ccnWheat" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://bioinformatics.cau.edu.cn/ccnWheat" .
+
 <https://bio.tools/ccomp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0128,
@@ -127127,14 +117340,13 @@ The CATNIP repurposing network can be searched either by specifying one or more
 
 <https://bio.tools/ccp4> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2537" ;
-            sc:name "Protein structure raw data" ;
-            sc:sameAs "http://edamontology.org/data_2537" ] ;
+            sc:additionalType "http://edamontology.org/data_2537" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein structure raw data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0883" ;
-            sc:name "Structure" ;
-            sc:sameAs "http://edamontology.org/data_0883" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0883" ;
+            sc:name "Structure" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_1317,
         edam:topic_2828 ;
@@ -127153,7 +117365,7 @@ The CATNIP repurposing network can be searched either by specifying one or more
     sc:url "http://www.ccp4.ac.uk" .
 
 <https://bio.tools/ccp4_wiki> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_1317 ;
     sc:citation <https://doi.org/10.3989/arbor.2015.772n2006> ;
@@ -127170,10 +117382,10 @@ The CATNIP repurposing network can be searched either by specifying one or more
 
 <https://bio.tools/ccp4mg> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0883" ;
-            sc:name "Structure" ;
-            sc:sameAs "http://edamontology.org/data_0883" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0883" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Structure" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0611,
         edam:topic_1317 ;
@@ -127192,7 +117404,7 @@ The CATNIP repurposing network can be searched either by specifying one or more
     sc:url "http://www.ccp4.ac.uk/MG/" .
 
 <https://bio.tools/ccpdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0130,
@@ -127210,19 +117422,40 @@ The CATNIP repurposing network can be searched either by specifying one or more
         "Mac",
         "Windows" ;
     sc:softwareHelp <http://crdd.osdd.net/raghava/ccpdb/help.html> ;
-    sc:url "http://crdd.osdd.net/raghava/ccpdb/" ;
+    sc:url "https://webs.iiitd.edu.in/raghava/ccpdb/" ;
     biotools:primaryContact "Dr. Gajendra P. S. Raghava" .
 
+<https://bio.tools/ccpe> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0099,
+        edam:topic_0203,
+        edam:topic_0602,
+        edam:topic_2229,
+        edam:topic_3170 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAB1236>,
+        "pmcid:PMC8789092",
+        "pubmed:34931240" ;
+    sc:description "CCPE is a cell cycle pseudotime estimation method characterizing cell cycle timing from single-cell RNA-seq data." ;
+    sc:featureList edam:operation_3223,
+        edam:operation_3454,
+        edam:operation_3935 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "CCPE" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/LiuJJ0327/CCPE" .
+
 <https://bio.tools/ccpem> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0940" ;
-            sc:name "Electron microscopy volume map" ;
-            sc:sameAs "http://edamontology.org/data_0940" ] ;
+            sc:additionalType "http://edamontology.org/data_0940" ;
+            sc:name "Electron microscopy volume map" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0883" ;
-            sc:name "Structure" ;
-            sc:sameAs "http://edamontology.org/data_0883" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0883" ;
+            sc:name "Structure" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0611 ;
     sc:citation <https://doi.org/10.1107/S1399004714018070>,
@@ -127238,8 +117471,27 @@ The CATNIP repurposing network can be searched either by specifying one or more
     sc:url "http://www.ccpem.ac.uk" ;
     biotools:primaryContact "CCP-EM Support" .
 
+<https://bio.tools/ccpls> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0204,
+        edam:topic_2229,
+        edam:topic_3308 ;
+    sc:citation <https://doi.org/10.1101/2022.01.12.476034> ;
+    sc:description "CCPLS reveals cell-type-specific spatial dependence of transcriptomes in single cells." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_3659,
+        edam:operation_3799 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "CCPLS" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/bioinfo-tsukuba/CCPLS" .
+
 <https://bio.tools/ccpn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0593,
         edam:topic_1317 ;
@@ -127257,7 +117509,7 @@ The CATNIP repurposing network can be searched either by specifying one or more
     sc:url "http://www.ccpn.ac.uk/v3-software" .
 
 <https://bio.tools/ccprd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -127278,7 +117530,7 @@ The CATNIP repurposing network can be searched either by specifying one or more
     sc:url "https://github.com/qingxiangguo/CCPRD" .
 
 <https://bio.tools/ccpromise> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -127297,7 +117549,7 @@ The CATNIP repurposing network can be searched either by specifying one or more
     biotools:primaryContact "Xueyuan Cao" .
 
 <https://bio.tools/ccrel> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_2885,
@@ -127314,18 +117566,18 @@ The CATNIP repurposing network can be searched either by specifying one or more
 
 <https://bio.tools/ccrepe> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3108" ;
-            sc:name "Experimental measurement" ;
-            sc:sameAs "http://edamontology.org/data_3108" ] ;
+            sc:additionalType "http://edamontology.org/data_3108" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Experimental measurement" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ],
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Plot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0951" ;
-            sc:name "Statistical estimate score" ;
-            sc:sameAs "http://edamontology.org/data_0951" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0951" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Statistical estimate score" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0091,
@@ -127348,7 +117600,7 @@ The CATNIP repurposing network can be searched either by specifying one or more
         "George Weingart" .
 
 <https://bio.tools/ccrxp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0166,
@@ -127369,7 +117621,7 @@ The CATNIP repurposing network can be searched either by specifying one or more
     biotools:primaryContact "Shandar Ahmad" .
 
 <https://bio.tools/ccsbase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3071,
@@ -127386,7 +117638,7 @@ The CATNIP repurposing network can be searched either by specifying one or more
     sc:url "https://CCSbase.net" .
 
 <https://bio.tools/ccsol> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0123,
@@ -127400,7 +117652,7 @@ The CATNIP repurposing network can be searched either by specifying one or more
     biotools:primaryContact "Gian Gaetano Tartaglia" .
 
 <https://bio.tools/cct> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_3307,
@@ -127416,7 +117668,7 @@ The CATNIP repurposing network can be searched either by specifying one or more
     biotools:primaryContact "Benjamin Landsteiner" .
 
 <https://bio.tools/cctop> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0736,
         edam:topic_0820,
@@ -127437,27 +117689,36 @@ The CATNIP repurposing network can be searched either by specifying one or more
 
 <https://bio.tools/cd-hit> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3168 ;
-    sc:citation <https://doi.org/10.1093/bioinformatics/bts565>,
-        <https://doi.org/10.1093/nar/gkw343>,
-        <https://doi.org/10.7490/f1000research.1114334.1> ;
+    sc:citation <https://doi.org/10.1093/bioinformatics/17.3.282>,
+        <https://doi.org/10.1093/bioinformatics/18.1.77>,
+        <https://doi.org/10.1093/bioinformatics/btl158>,
+        <https://doi.org/10.1093/bioinformatics/btq003>,
+        <https://doi.org/10.1093/bioinformatics/bts565>,
+        "pmcid:PMC2828112",
+        "pmcid:PMC3516142",
+        "pubmed:11294794",
+        "pubmed:11836214",
+        "pubmed:16731699",
+        "pubmed:20053844",
+        "pubmed:23060610" ;
     sc:description "Cluster a nucleotide dataset into representative sequences." ;
     sc:featureList edam:operation_0291 ;
     sc:name "cd-hit" ;
@@ -127469,8 +117730,30 @@ The CATNIP repurposing network can be searched either by specifying one or more
     sc:url "https://github.com/weizhongli/cdhit" ;
     biotools:primaryContact "Galaxy Support Team" .
 
+<https://bio.tools/cd-mvgnn> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Workbench" ;
+    sc:applicationSubCategory edam:topic_0081,
+        edam:topic_3047,
+        edam:topic_3314,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC039>,
+        "pubmed:35094072" ;
+    sc:description "Cross-Dependent Graph Neural Networks for Molecular Property Prediction." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3927,
+        edam:operation_3929 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "CD-MVGNN" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/uta-smile/CD-MVGNN" .
+
 <https://bio.tools/cd-nuss> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0082,
@@ -127489,7 +117772,7 @@ The CATNIP repurposing network can be searched either by specifying one or more
     sc:url "https://project.iith.ac.in/cdnuss/" .
 
 <https://bio.tools/cd-search> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0102,
@@ -127512,7 +117795,7 @@ The CATNIP repurposing network can be searched either by specifying one or more
     biotools:primaryContact "Help Desk" .
 
 <https://bio.tools/cd2sbgnml> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0203,
         edam:topic_0602,
@@ -127528,8 +117811,31 @@ The CATNIP repurposing network can be searched either by specifying one or more
     sc:softwareHelp <https://sbgn.github.io/cd2sbgnml/> ;
     sc:url "https://github.com/sbgn/cd2sbgnml" .
 
+<https://bio.tools/cd8tcei-eukpath> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0621,
+        edam:topic_0804,
+        edam:topic_3324,
+        edam:topic_3474,
+        edam:topic_3966 ;
+    sc:citation <https://doi.org/10.3389/FGENE.2022.935989>,
+        "pmcid:PMC9354802",
+        "pubmed:35937988" ;
+    sc:description "An effective sequence-based predictor named CD8TCEI-EukPath, capable of rapidly identifying eukaryotic pathogen-derived antigen epitopes for host CD8+ T cells from large peptide-coding datasets." ;
+    sc:featureList edam:operation_0252,
+        edam:operation_0416,
+        edam:operation_3936 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "CD8TCEI-EukPath" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://lab.malab.cn/~hrs/CD8TCEI-EukPath/" .
+
 <https://bio.tools/cdasor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0634,
@@ -127549,7 +117855,7 @@ License either MIT, or GPLv3 or later""" ;
     sc:url "https://github.com/BioinformaticsCSU/CDASOR" .
 
 <https://bio.tools/cdbest> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080 ;
@@ -127567,7 +117873,7 @@ License either MIT, or GPLv3 or later""" ;
     biotools:primaryContact "Support" .
 
 <https://bio.tools/cdbg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0654,
@@ -127581,89 +117887,137 @@ License either MIT, or GPLv3 or later""" ;
     sc:url "https://www.uni-ulm.de/en/in/institute-of-theoretical-computer-science/research/seqana.html" ;
     biotools:primaryContact "Dr. Enno Ohlebusch" .
 
+<https://bio.tools/cdc> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3063,
+        edam:topic_3305,
+        edam:topic_3324,
+        edam:topic_3325,
+        edam:topic_3390 ;
+    sc:citation <https://doi.org/10.5888/PCD19.210459>,
+        "pmcid:PMC9258452",
+        "pubmed:35709356" ;
+    sc:description "Population Level Analysis and Community EStimates (PLACES)  that provides model-based estimates for 29 measures among all counties and most incorporated and census-designated places, census tracts, and ZIP Code tabulation areas across the US." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3659 ;
+    sc:license "Not licensed" ;
+    sc:name "CDC" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://www.cdc.gov/places/about/index.html> ;
+    sc:url "http://www.cdc.gov/places/" .
+
+<https://bio.tools/cdcdb> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0202,
+        edam:topic_0218,
+        edam:topic_3336,
+        edam:topic_3375 ;
+    sc:citation <https://doi.org/10.1038/S41597-022-01360-Z>,
+        "pmcid:PMC9163158",
+        "pubmed:35654801" ;
+    sc:description "A large and continuously updated drug combination database." ;
+    sc:featureList edam:operation_3436,
+        edam:operation_3938 ;
+    sc:license "Not licensed" ;
+    sc:name "CDCDB" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://icc.ise.bgu.ac.il/medical_ai/CDCDB/" .
+
 <https://bio.tools/cdd> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2327" ;
-            sc:name "GI number (protein)" ;
-            sc:sameAs "http://edamontology.org/data_2327" ],
+            sc:additionalType "http://edamontology.org/data_2666" ;
+            sc:name "CDD ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2666" ;
-            sc:name "CDD ID" ;
-            sc:sameAs "http://edamontology.org/data_2666" ],
+            sc:additionalType "http://edamontology.org/data_2327" ;
+            sc:name "GI number (protein)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2714" ;
-            sc:name "CDD PSSM-ID" ;
-            sc:sameAs "http://edamontology.org/data_2714" ],
+            sc:additionalType "http://edamontology.org/data_2714" ;
+            sc:name "CDD PSSM-ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2714" ;
-            sc:name "CDD PSSM-ID" ;
-            sc:sameAs "http://edamontology.org/data_2714" ],
+            sc:additionalType "http://edamontology.org/data_2714" ;
+            sc:name "CDD PSSM-ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2666" ;
-            sc:name "CDD ID" ;
-            sc:sameAs "http://edamontology.org/data_2666" ],
+            sc:additionalType "http://edamontology.org/data_2327" ;
+            sc:name "GI number (protein)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1096" ;
-            sc:name "Sequence accession (protein)" ;
-            sc:sameAs "http://edamontology.org/data_1096" ],
+            sc:additionalType "http://edamontology.org/data_2714" ;
+            sc:name "CDD PSSM-ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1096" ;
-            sc:name "Sequence accession (protein)" ;
-            sc:sameAs "http://edamontology.org/data_1096" ],
+            sc:additionalType "http://edamontology.org/data_2666" ;
+            sc:name "CDD ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2714" ;
-            sc:name "CDD PSSM-ID" ;
-            sc:sameAs "http://edamontology.org/data_2714" ],
+            sc:additionalType "http://edamontology.org/data_1096" ;
+            sc:name "Sequence accession (protein)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2327" ;
-            sc:name "GI number (protein)" ;
-            sc:sameAs "http://edamontology.org/data_2327" ] ;
+            sc:additionalType "http://edamontology.org/data_1096" ;
+            sc:name "Sequence accession (protein)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0907" ;
-            sc:name "Protein family report" ;
-            sc:sameAs "http://edamontology.org/data_0907" ],
+            sc:additionalType "http://edamontology.org/data_0907" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Protein family report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ],
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Protein features" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1384" ;
-            sc:name "Sequence alignment (protein)" ;
-            sc:sameAs "http://edamontology.org/data_1384" ],
+            sc:additionalType "http://edamontology.org/data_0907" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Protein family report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ],
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Protein features" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0907" ;
-            sc:name "Protein family report" ;
-            sc:sameAs "http://edamontology.org/data_0907" ],
+            sc:additionalType "http://edamontology.org/data_1384" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Sequence alignment (protein)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ],
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Protein features" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ],
+            sc:additionalType "http://edamontology.org/data_0907" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Protein family report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0907" ;
-            sc:name "Protein family report" ;
-            sc:sameAs "http://edamontology.org/data_0907" ],
+            sc:additionalType "http://edamontology.org/data_1384" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Sequence alignment (protein)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1384" ;
-            sc:name "Sequence alignment (protein)" ;
-            sc:sameAs "http://edamontology.org/data_1384" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Protein features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0166,
         edam:topic_0623,
         edam:topic_0736 ;
-    sc:citation <https://doi.org/10.1093/nar/gkq1189>,
+    sc:citation <https://doi.org/10.1093/nar/30.1.281>,
+        <https://doi.org/10.1093/nar/gki069>,
+        <https://doi.org/10.1093/nar/gkl951>,
+        <https://doi.org/10.1093/nar/gkn845>,
+        <https://doi.org/10.1093/nar/gkq1189>,
+        <https://doi.org/10.1093/nar/gks1243>,
+        <https://doi.org/10.1093/nar/gkz991>,
         "pmcid:PMC3013737",
+        "pmcid:PMC6943070",
+        "pubmed:11752315",
+        "pubmed:15608175",
+        "pubmed:17135202",
+        "pubmed:18984618",
         "pubmed:21109532",
-        "pubmed:25414356" ;
+        "pubmed:23197659",
+        "pubmed:25414356",
+        "pubmed:31777944" ;
     sc:description "Resource for the annotation of protein sequences with the location of conserved domain footprints, and functional sites inferred from these footprints. It includes manually curated domain models that make use of protein 3D structure to refine domain models and provide insights into sequence/structure/function relationships." ;
     sc:featureList edam:operation_0224 ;
     sc:name "Conserved domain database CDD" ;
@@ -127676,7 +118030,7 @@ License either MIT, or GPLv3 or later""" ;
     biotools:primaryContact <http://orcid.org/0000-0003-1516-0712> .
 
 <https://bio.tools/cddapp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0602,
@@ -127692,7 +118046,7 @@ License either MIT, or GPLv3 or later""" ;
     sc:url "http://apps.cytoscape.org/apps/cddapp" .
 
 <https://bio.tools/cddb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0176,
@@ -127714,7 +118068,7 @@ License either MIT, or GPLv3 or later""" ;
     biotools:primaryContact "Mark Bathe" .
 
 <https://bio.tools/cdeep3m> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_3382,
         edam:topic_3474 ;
@@ -127727,7 +118081,7 @@ License either MIT, or GPLv3 or later""" ;
     sc:url "https://cdeep3m-stage.crbs.ucsd.edu/cdeep3m" .
 
 <https://bio.tools/cderd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0602,
@@ -127745,14 +118099,14 @@ License either MIT, or GPLv3 or later""" ;
 
 <https://bio.tools/cdfread> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3650" ;
+            sc:name "Mass spectrometry spectra" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3650" ;
+            sc:name "Mass spectrometry spectra" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3520 ;
     sc:description "A simple reader of mass spectra in netCDF." ;
@@ -127768,7 +118122,7 @@ License either MIT, or GPLv3 or later""" ;
     sc:url "http://cdfread.sourceforge.net/" .
 
 <https://bio.tools/cdh> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0194,
         edam:topic_3293 ;
@@ -127787,7 +118141,7 @@ License either MIT, or GPLv3 or later""" ;
     sc:url "https://github.com/ElsevierSoftwareX/SOFTX-D-17-00024" .
 
 <https://bio.tools/cdk> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_2258 ;
@@ -127809,8 +118163,25 @@ License either MIT, or GPLv3 or later""" ;
     sc:softwareVersion "1" ;
     sc:url "http://github.com/cdk/cdk/" .
 
+<https://bio.tools/cdk_depict> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2301" ;
+            sc:name "SMILES string" ] ;
+    bsc:output [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1712" ;
+            sc:encodingFormat "http://edamontology.org/format_3604" ;
+            sc:name "Chemical structure image" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:applicationSubCategory edam:topic_3314 ;
+    sc:description "Tool to visualize chemical structures in the SMILES line notation as 2D chemical structures." ;
+    sc:featureList edam:operation_0570 ;
+    sc:isAccessibleForFree true ;
+    sc:name "CDK Depict" ;
+    sc:softwareVersion "1.9.2" ;
+    sc:url "https://www.simolecule.com/cdkdepict/depict.html" .
+
 <https://bio.tools/cdkam> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0637,
         edam:topic_2269,
@@ -127828,7 +118199,7 @@ License either MIT, or GPLv3 or later""" ;
     sc:url "https://github.com/SJTU-CGM/CDKAM" .
 
 <https://bio.tools/cdna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0654,
@@ -127849,7 +118220,7 @@ License either MIT, or GPLv3 or later""" ;
     biotools:primaryContact "Kosuke Fujishima" .
 
 <https://bio.tools/cdna-detector> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0654,
@@ -127869,8 +118240,21 @@ License either MIT, or GPLv3 or later""" ;
         "Windows" ;
     sc:url "https://github.com/rheinbaylab/cDNA-detector" .
 
+<https://bio.tools/cdpred> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:description "CDpred is a web based approach used to predict the celiac disease associated peptides and motifs." ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "CDpred" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/cdpred/index.php> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/cdpred/index.php" .
+
 <https://bio.tools/cdrom> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3055,
@@ -127890,7 +118274,7 @@ License either MIT, or GPLv3 or later""" ;
     biotools:primaryContact "Raquel Assis" .
 
 <https://bio.tools/cdsbank> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0078,
@@ -127909,8 +118293,28 @@ License either MIT, or GPLv3 or later""" ;
     sc:url "http://hazeslab.med.ualberta.ca/CDSbank/" ;
     biotools:primaryContact "Bart Hazes" .
 
+<https://bio.tools/cdsimpute> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0099,
+        edam:topic_3170,
+        edam:topic_3308 ;
+    sc:citation <https://doi.org/10.1016/J.COMPBIOMED.2022.105658>,
+        "pubmed:35751187" ;
+    sc:description "CDSImpute is a novel effective method to impute the dropout events of a scRNA-seq expression matrix." ;
+    sc:featureList edam:operation_3223,
+        edam:operation_3463,
+        edam:operation_3557 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "CDSImpute" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/riasatazim/CDSImpute" .
+
 <https://bio.tools/cdsnake> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3174,
@@ -127926,7 +118330,7 @@ License either MIT, or GPLv3 or later""" ;
     sc:url "https://github.com/ydkondratenko/cdsnake" .
 
 <https://bio.tools/ce-mc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -127943,7 +118347,7 @@ License either MIT, or GPLv3 or later""" ;
     sc:url "http://bioinformatics.albany.edu/~cemc/" .
 
 <https://bio.tools/ceRNA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_3170,
         edam:topic_3512 ;
@@ -127958,7 +118362,7 @@ License either MIT, or GPLv3 or later""" ;
     sc:url "https://github.com/ChaowangLan/ceRNA" .
 
 <https://bio.tools/ceaid> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0769,
         edam:topic_3500 ;
@@ -127972,7 +118376,7 @@ License either MIT, or GPLv3 or later""" ;
     biotools:primaryContact <https://orcid.org/0000-0002-8257-984X> .
 
 <https://bio.tools/ceas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0203,
@@ -127994,8 +118398,50 @@ License either MIT, or GPLv3 or later""" ;
     biotools:primaryContact "Liping Wei",
         "X. Shirley Liu" .
 
+<https://bio.tools/cebs> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0089,
+        edam:topic_0219,
+        edam:topic_2840,
+        edam:topic_3360,
+        edam:topic_3366 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAB981>,
+        "pmcid:PMC8728139",
+        "pubmed:34751388" ;
+    sc:description "A curated toxicology database with enhanced tools for data integration." ;
+    sc:featureList edam:operation_2421,
+        edam:operation_2422,
+        edam:operation_3431,
+        edam:operation_3436 ;
+    sc:isAccessibleForFree true ;
+    sc:name "CEBS" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://cebs.niehs.nih.gov/cebs/" .
+
+<https://bio.tools/cecaflux> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3407,
+        edam:topic_3955 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC341>,
+        "pubmed:35595250" ;
+    sc:description "Web server for standardized and visual instationary 13C metabolic flux analysis." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3435,
+        edam:operation_3715 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "CeCaFLUX" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://www.cecaflux.net" .
+
 <https://bio.tools/cedar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web API" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -128010,7 +118456,7 @@ License either MIT, or GPLv3 or later""" ;
     sc:url "http://www3.cmbi.umcn.nl/cedar/" .
 
 <https://bio.tools/cedar_ondemand> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0089 ;
     sc:citation <https://doi.org/10.1186/s12859-018-2247-6> ;
@@ -128025,8 +118471,31 @@ License either MIT, or GPLv3 or later""" ;
     sc:url "https://chrome.google.com/webstore/search/CEDAROnDemand" ;
     biotools:primaryContact "Syed Ahmad Chan Bukhari" .
 
+<https://bio.tools/cedr_atlas> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0625,
+        edam:topic_2229,
+        edam:topic_2640,
+        edam:topic_3170 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAB897>,
+        "pmcid:PMC8728137",
+        "pubmed:34634794" ;
+    sc:description "A knowledgebase of cellular drug response." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_2429,
+        edam:operation_2436,
+        edam:operation_4009 ;
+    sc:isAccessibleForFree true ;
+    sc:name "CeDR Atlas" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://ngdc.cncb.ac.cn/cedr" .
+
 <https://bio.tools/ceeder-evidence> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3068,
         edam:topic_3390,
@@ -128041,7 +118510,7 @@ License either MIT, or GPLv3 or later""" ;
     sc:url "https://environmentalevidence.shinyapps.io/CEEDER/" .
 
 <https://bio.tools/ceg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0621,
         edam:topic_2229,
@@ -128059,7 +118528,7 @@ License either MIT, or GPLv3 or later""" ;
     sc:url "http://cefg.uestc.cn/ceg" .
 
 <https://bio.tools/cega> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0797 ;
     sc:citation <https://doi.org/10.1093/nar/gkv1163> ;
@@ -128073,7 +118542,7 @@ License either MIT, or GPLv3 or later""" ;
     sc:url "http://cega.ezlab.org/" .
 
 <https://bio.tools/cegma> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0654 ;
@@ -128090,7 +118559,7 @@ License either MIT, or GPLv3 or later""" ;
     sc:url "http://korflab.ucdavis.edu/Datasets/cegma/" .
 
 <https://bio.tools/cel-id> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_2640,
@@ -128109,7 +118578,7 @@ License either MIT, or GPLv3 or later""" ;
     sc:url "https://github.com/chenlabgccri/CeL-ID" .
 
 <https://bio.tools/celavi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2229,
         edam:topic_3382 ;
@@ -128122,8 +118591,28 @@ License either MIT, or GPLv3 or later""" ;
     sc:softwareHelp <http://www.celavi.pro/tutorial.html> ;
     sc:url "http://www.celavi.pro" .
 
+<https://bio.tools/cell-acdc> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workbench" ;
+    sc:applicationSubCategory edam:topic_0621,
+        edam:topic_2229,
+        edam:topic_3382,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1101/2021.09.28.462199> ;
+    sc:description "A GUI-based Python framework for segmentation, tracking and cell cycle annotations of microscopy data." ;
+    sc:featureList edam:operation_3443,
+        edam:operation_3553,
+        edam:operation_3799 ;
+    sc:isAccessibleForFree true ;
+    sc:license "BSD-3-Clause" ;
+    sc:name "Cell-ACDC" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/SchmollerLab/Cell_ACDC" .
+
 <https://bio.tools/cell-cycle-analysis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_2229,
@@ -128140,7 +118629,7 @@ License either MIT, or GPLv3 or later""" ;
     biotools:primaryContact "Brian DuChez" .
 
 <https://bio.tools/cell-dock> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2275 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/bts454> ;
@@ -128150,7 +118639,7 @@ License either MIT, or GPLv3 or later""" ;
     sc:url "http://mmb.pcb.ub.es/~cpons/Cell-Dock/" .
 
 <https://bio.tools/cell-id> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2229,
         edam:topic_2269,
@@ -128167,14 +118656,12 @@ License either MIT, or GPLv3 or later""" ;
 
 <https://bio.tools/cell-motility> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3449" ;
-            sc:name "Cell migration track image" ;
-            sc:sameAs "http://edamontology.org/data_3449" ] ;
+            sc:additionalType "http://edamontology.org/data_3449" ;
+            sc:name "Cell migration track image" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3449" ;
-            sc:name "Cell migration track image" ;
-            sc:sameAs "http://edamontology.org/data_3449" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3449" ;
+            sc:name "Cell migration track image" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_2229 ;
     sc:citation <https://doi.org/10.1186/1471-2105-7-289>,
@@ -128193,7 +118680,7 @@ License either MIT, or GPLv3 or later""" ;
     biotools:primaryContact "Lennart Martens" .
 
 <https://bio.tools/cell-segmentation-methods-comparison> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3344,
@@ -128210,7 +118697,7 @@ License either MIT, or GPLv3 or later""" ;
     biotools:primaryContact "Tomas Vicar" .
 
 <https://bio.tools/cell-segmentation-ramework> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_2229,
@@ -128229,7 +118716,7 @@ License either MIT, or GPLv3 or later""" ;
     biotools:primaryContact "zhenzhou wang" .
 
 <https://bio.tools/cell-segmentation-seg-self> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3344,
@@ -128247,7 +118734,7 @@ License either MIT, or GPLv3 or later""" ;
     biotools:primaryContact "Costas Panagiotakis" .
 
 <https://bio.tools/cell-shape-classifier> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3344,
@@ -128265,7 +118752,7 @@ License either MIT, or GPLv3 or later""" ;
     biotools:primaryContact "Christof Seiler" .
 
 <https://bio.tools/cell-viability-estimator-3d-scaffolds> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3344,
@@ -128283,7 +118770,7 @@ License either MIT, or GPLv3 or later""" ;
     biotools:primaryContact "Benjamin Gantenbein" .
 
 <https://bio.tools/cell2chem> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0821,
         edam:topic_2258,
@@ -128299,7 +118786,7 @@ License either MIT, or GPLv3 or later""" ;
     sc:url "http://www.rxnfinder.org/cell2chem/" .
 
 <https://bio.tools/cellHarmony> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3170,
         edam:topic_3308 ;
@@ -128311,8 +118798,29 @@ License either MIT, or GPLv3 or later""" ;
     sc:softwareHelp <http://www.altanalyze.org/cellHarmony/> ;
     sc:url "https://github.com/AltAnalyze/cellHarmony-Align" .
 
+<https://bio.tools/cell_layers> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_2229,
+        edam:topic_3308,
+        edam:topic_3395 ;
+    sc:citation <https://doi.org/10.1093/BIOADV/VBAC051>,
+        "pmcid:PMC9362878",
+        "pubmed:35967929" ;
+    sc:description "Cell Layers is an interactive Sankey tool for the quantitative investigation of gene expression, coexpression, biological processes, and cluster integrity across clustering resolutions." ;
+    sc:featureList edam:operation_0313,
+        edam:operation_2844,
+        edam:operation_3799,
+        edam:operation_3891 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "Cell Layers" ;
+    sc:softwareHelp <https://celllayers.readthedocs.io/en/latest/index.html>,
+        <https://github.com/apblair/CellLayers/tree/master/notebooks> ;
+    sc:url "https://github.com/apblair/CellLayers" .
+
 <https://bio.tools/cell_pp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0621,
@@ -128333,18 +118841,18 @@ License either MIT, or GPLv3 or later""" ;
 
 <https://bio.tools/cellalign> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2337" ;
-            sc:name "Resource metadata" ;
-            sc:sameAs "http://edamontology.org/data_2337" ],
+            sc:additionalType "http://edamontology.org/data_3112" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "Gene expression matrix" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3112" ;
-            sc:name "Gene expression matrix" ;
-            sc:sameAs "http://edamontology.org/data_3112" ] ;
+            sc:additionalType "http://edamontology.org/data_2337" ;
+            sc:encodingFormat "http://edamontology.org/format_3326" ;
+            sc:name "Resource metadata" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0867" ;
-            sc:name "Sequence alignment report" ;
-            sc:sameAs "http://edamontology.org/data_0867" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0867" ;
+            sc:encodingFormat "http://edamontology.org/format_2032" ;
+            sc:name "Sequence alignment report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2229,
@@ -128363,7 +118871,7 @@ License either MIT, or GPLv3 or later""" ;
     biotools:primaryContact "Ayelet Alpert" .
 
 <https://bio.tools/cellar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -128379,7 +118887,7 @@ License either MIT, or GPLv3 or later""" ;
     sc:url "https://data.test.hubmapconsortium.org/app/cellar" .
 
 <https://bio.tools/cellbase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web API" ;
     sc:applicationSubCategory edam:topic_2259 ;
@@ -128398,7 +118906,7 @@ License either MIT, or GPLv3 or later""" ;
     biotools:primaryContact "babelomics@cipf.es  (Francisco García)" .
 
 <https://bio.tools/cellbaser> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3489 ;
     sc:description "This package makes use of the exhaustive RESTful Web service API that has been implemented for the Cellabase database. It enable researchers to query and obtain a wealth of biological information from a single database saving a lot of time. Another benefit is that researchers can easily make queries about different biological topics and link all this information together as all information is integrated." ;
@@ -128417,7 +118925,7 @@ License either MIT, or GPLv3 or later""" ;
     biotools:primaryContact "Mohammed OE Abdallah" .
 
 <https://bio.tools/cellcall> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0602,
@@ -128439,7 +118947,7 @@ License either MIT, or GPLv3 or later""" ;
     sc:url "https://github.com/ShellyCoder/cellcall" .
 
 <https://bio.tools/cellchat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3170,
@@ -128455,7 +118963,7 @@ License either MIT, or GPLv3 or later""" ;
     sc:url "https://github.com/sqjin/CellChat" .
 
 <https://bio.tools/cellcoal> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0625,
@@ -128473,24 +118981,29 @@ License either MIT, or GPLv3 or later""" ;
     sc:softwareHelp <https://dapogon.github.io/cellcoal/cellcoal.manual.v1.1.pdf> ;
     sc:url "https://github.com/dapogon/cellcoal" .
 
+<https://bio.tools/cellcollective> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:citation <https://doi.org/10.1186/1752-0509-6-96> ;
+    sc:description "The Cell Collective is a platform that allows the world-wide scientific community to create these models collectively. Its interface enables users to build and use models without specifying any mathematical equations or computer code - addressing one of the major hurdles with computational research. In addition, this platform allows scientists to simulate and analyze the models in real-time on the web, including the ability to simulate loss/gain of function and test what-if scenarios in real time." ;
+    sc:name "CellCollective" ;
+    sc:url "https://cellcollective.org/" .
+
 <https://bio.tools/cellcycledb> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2764" ;
-            sc:name "Protein name (UniProt)" ;
-            sc:sameAs "http://edamontology.org/data_2764" ],
+            sc:additionalType "http://edamontology.org/data_2764" ;
+            sc:name "Protein name (UniProt)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1026" ;
-            sc:name "Gene symbol" ;
-            sc:sameAs "http://edamontology.org/data_1026" ] ;
+            sc:additionalType "http://edamontology.org/data_1026" ;
+            sc:name "Gene symbol" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0896" ;
-            sc:name "Protein report" ;
-            sc:sameAs "http://edamontology.org/data_0896" ],
+            sc:additionalType "http://edamontology.org/data_0896" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Protein report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0916" ;
-            sc:name "Gene report" ;
-            sc:sameAs "http://edamontology.org/data_0916" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0916" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Gene report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0623,
@@ -128507,8 +119020,28 @@ License either MIT, or GPLv3 or later""" ;
     sc:url "http://www.itb.cnr.it/cellcycle/index.html" ;
     biotools:primaryContact "Roberta Alfieri" .
 
+<https://bio.tools/celldepot> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_2229,
+        edam:topic_3170,
+        edam:topic_3489 ;
+    sc:citation <https://doi.org/10.1101/2021.09.30.462602> ;
+    sc:description "A unified repository for scRNA-seq data and visual exploration." ;
+    sc:featureList edam:operation_0224,
+        edam:operation_0337,
+        edam:operation_3223 ;
+    sc:isAccessibleForFree true ;
+    sc:name "CellDepot" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://interactivereport.github.io/CellDepot/bookdown/docs/SITutorial.html> ;
+    sc:url "http://celldepot.bxgenomics.com" .
+
 <https://bio.tools/cellector> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0108,
@@ -128527,8 +119060,33 @@ License either MIT, or GPLv3 or later""" ;
     sc:softwareHelp <https://github.com/francescojm/CELLector/blob/master/CELLector.pdf> ;
     sc:url "https://ot-cellector.shinyapps.io/CELLector_App/" .
 
+<https://bio.tools/cellenics> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Bioinformatics portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0091,
+        edam:topic_3170,
+        edam:topic_3308,
+        edam:topic_3512 ;
+    sc:description """Cellenics® is an open source, cloud-based analytics tool for single cell RNA sequencing data. It allows you to explore and analyze single cell datasets without the need to develop bioinformatics skills. Cellenics® has a user-friendly interface with a clear workflow. Offers a variety of pre-loaded publication-ready plots.
+
+Cellenics® software was developed by © 2020-2022 President and Fellows of Harvard College.
+Biomage is an open source software company that provided services to Harvard Medical School for the design and development of Cellenics®.""" ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3432,
+        edam:operation_3935 ;
+    sc:isAccessibleForFree true ;
+    sc:name "Cellenics" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://github.com/hms-dbmi-cellenics/developer-docs>,
+        <https://github.com/hms-dbmi-cellenics/releases>,
+        <https://www.biomage.net/user-guide> ;
+    sc:url "https://scp.biomage.net" .
+
 <https://bio.tools/cellexplorer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0769,
@@ -128546,14 +119104,14 @@ License either MIT, or GPLv3 or later""" ;
 
 <https://bio.tools/cellgrowth> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0963" ;
-            sc:name "Cell line report" ;
-            sc:sameAs "http://edamontology.org/data_0963" ] ;
+            sc:additionalType "http://edamontology.org/data_0963" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Cell line report" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2269,
@@ -128573,16 +119131,37 @@ License either MIT, or GPLv3 or later""" ;
     sc:url "http://bioconductor.org/packages/release/bioc/html/cellGrowth.html" ;
     biotools:primaryContact "Julien Gagneur" .
 
+<https://bio.tools/cellhashr> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_2229,
+        edam:topic_3168,
+        edam:topic_3308 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC213>,
+        "pubmed:35394016" ;
+    sc:description "An R package designed to demultiplex cell hashing data" ;
+    sc:featureList edam:operation_0314,
+        edam:operation_3200,
+        edam:operation_3933 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "cellhashR" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://bimberlab.github.io/cellhashR/> ;
+    sc:url "https://github.com/BimberLab/cellhashR" .
+
 <https://bio.tools/cellhts2> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3108" ;
-            sc:name "Experimental measurement" ;
-            sc:sameAs "http://edamontology.org/data_3108" ] ;
+            sc:additionalType "http://edamontology.org/data_3108" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Experimental measurement" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3523 ;
@@ -128605,7 +119184,7 @@ License either MIT, or GPLv3 or later""" ;
     biotools:primaryContact "Joseph Barry" .
 
 <https://bio.tools/cellimagelibrary> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0611,
         edam:topic_3382,
@@ -128629,7 +119208,7 @@ License either MIT, or GPLv3 or later""" ;
     biotools:primaryContact "David Orloff, Manager of the Library" .
 
 <https://bio.tools/cellinker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0154 ;
@@ -128645,7 +119224,7 @@ License either MIT, or GPLv3 or later""" ;
     sc:url "http://www.rna-society.org/cellinker/" .
 
 <https://bio.tools/cellity> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2229,
@@ -128665,7 +119244,7 @@ License either MIT, or GPLv3 or later""" ;
     biotools:primaryContact "Tomislav Ilicic" .
 
 <https://bio.tools/cellkb-immune> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0634,
         edam:topic_2229,
@@ -128680,7 +119259,7 @@ License either MIT, or GPLv3 or later""" ;
     sc:url "https://www.cellkb.com/immune" .
 
 <https://bio.tools/cellmap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0128 ;
     sc:citation <https://doi.org/10.12688/f1000research.12707.2> ;
@@ -128692,7 +119271,7 @@ License either MIT, or GPLv3 or later""" ;
     sc:url "https://github.com/sacdallago/cellmap" .
 
 <https://bio.tools/cellmapper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203 ;
@@ -128711,7 +119290,7 @@ License either MIT, or GPLv3 or later""" ;
     biotools:primaryContact <http://orcid.org/0000-0002-2381-2170> .
 
 <https://bio.tools/cellmaptracer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_2229,
@@ -128729,7 +119308,7 @@ License either MIT, or GPLv3 or later""" ;
     sc:url "https://github.com/ocbe-uio/CellMAPtracer" .
 
 <https://bio.tools/cellmesh> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Web application" ;
     sc:applicationSubCategory edam:topic_2229,
@@ -128748,14 +119327,12 @@ License either MIT, or GPLv3 or later""" ;
 
 <https://bio.tools/cellmissy> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3449" ;
-            sc:name "Cell migration track image" ;
-            sc:sameAs "http://edamontology.org/data_3449" ] ;
+            sc:additionalType "http://edamontology.org/data_3449" ;
+            sc:name "Cell migration track image" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3449" ;
-            sc:name "Cell migration track image" ;
-            sc:sameAs "http://edamontology.org/data_3449" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3449" ;
+            sc:name "Cell migration track image" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_2229 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btt437>,
@@ -128772,7 +119349,7 @@ License either MIT, or GPLv3 or later""" ;
     sc:url "https://github.com/compomics/cellmissy" .
 
 <https://bio.tools/cellmix> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3277 ;
@@ -128788,7 +119365,7 @@ License either MIT, or GPLv3 or later""" ;
     sc:url "http://web.cbio.uct.ac.za/~renaud/CRAN/web/CellMix/" .
 
 <https://bio.tools/cellml> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_3300,
         edam:topic_3315 ;
@@ -128803,16 +119380,25 @@ License either MIT, or GPLv3 or later""" ;
     sc:softwareVersion "2.0" ;
     sc:url "https://cellml.org/specifications/cellml_2.0/" .
 
+<https://bio.tools/cellmodeller> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:citation <https://doi.org/10.1021/sb300031n> ;
+    sc:description "CellModeller is a Python-based framework for modelling large-scale multi-cellular systems, such as biofilms, plant and animal tissue." ;
+    sc:isAccessibleForFree true ;
+    sc:name "CellModeller" ;
+    sc:softwareHelp <https://github.com/HaseloffLab/CellModeller/wiki> ;
+    sc:url "https://haselofflab.github.io/CellModeller/" .
+
 <https://bio.tools/cellnetanalyzer> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0950" ;
-            sc:name "Mathematical model" ;
-            sc:sameAs "http://edamontology.org/data_0950" ] ;
+            sc:additionalType "http://edamontology.org/data_0950" ;
+            sc:encodingFormat "http://edamontology.org/format_2585" ;
+            sc:name "Mathematical model" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0950" ;
-            sc:name "Mathematical model" ;
-            sc:sameAs "http://edamontology.org/data_0950" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0950" ;
+            sc:encodingFormat "http://edamontology.org/format_2585" ;
+            sc:name "Mathematical model" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_3307 ;
@@ -128839,7 +119425,7 @@ Metabolic networks can be analyzed by means of stoichiometric and constraint-bas
     biotools:primaryContact <http://orcid.org/0000-0003-2563-7561> .
 
 <https://bio.tools/cellnetvis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2229 ;
@@ -128857,14 +119443,14 @@ Metabolic networks can be analyzed by means of stoichiometric and constraint-bas
 
 <https://bio.tools/cellnoptr> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ] ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:encodingFormat "http://edamontology.org/format_3619" ;
+            sc:name "Pathway or network" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2984" ;
-            sc:name "Pathway or network report" ;
-            sc:sameAs "http://edamontology.org/data_2984" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2984" ;
+            sc:encodingFormat "http://edamontology.org/format_3619" ;
+            sc:name "Pathway or network report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0602,
@@ -128884,7 +119470,7 @@ Metabolic networks can be analyzed by means of stoichiometric and constraint-bas
     biotools:primaryContact "T.Cokelaer" .
 
 <https://bio.tools/cello> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Ontology",
         "Web application" ;
@@ -128906,18 +119492,15 @@ Metabolic networks can be analyzed by means of stoichiometric and constraint-bas
 
 <https://bio.tools/cellosaurus> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3671" ;
-            sc:name "Text" ;
-            sc:sameAs "http://edamontology.org/data_3671" ],
+            sc:additionalType "http://edamontology.org/data_3671" ;
+            sc:name "Text" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0842" ;
-            sc:name "Identifier" ;
-            sc:sameAs "http://edamontology.org/data_0842" ] ;
+            sc:additionalType "http://edamontology.org/data_0842" ;
+            sc:name "Identifier" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0963" ;
-            sc:name "Cell line report" ;
-            sc:sameAs "http://edamontology.org/data_0963" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0963" ;
+            sc:name "Cell line report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0634,
@@ -128936,7 +119519,7 @@ Metabolic networks can be analyzed by means of stoichiometric and constraint-bas
     sc:url "http://web.expasy.org/cellosaurus/" .
 
 <https://bio.tools/cellpack> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_2229,
@@ -128954,8 +119537,33 @@ Metabolic networks can be analyzed by means of stoichiometric and constraint-bas
     sc:url "http://www.cellpack.org/" ;
     biotools:primaryContact "Support forum" .
 
+<https://bio.tools/cellpaint> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Bioinformatics portal",
+        "Desktop application" ;
+    sc:applicationSubCategory edam:topic_0593,
+        edam:topic_0611,
+        edam:topic_2229,
+        edam:topic_2828,
+        edam:topic_3452 ;
+    sc:citation <https://doi.org/10.3389/FBINF.2021.660936>,
+        "pmcid:PMC8594902",
+        "pubmed:34790910" ;
+    sc:description "CellPAINT is a free-form painting app that allows users to create their own living illustrations of cellular landscapes." ;
+    sc:featureList edam:operation_0310,
+        edam:operation_0337,
+        edam:operation_1812 ;
+    sc:isAccessibleForFree true ;
+    sc:name "CellPAINT" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://ccsb.scripps.edu/cellpaint/cellpaint2-documentation/> ;
+    sc:softwareVersion "2.0" ;
+    sc:url "http://ccsb.scripps.edu/cellpaint" .
+
 <https://bio.tools/cellpd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2229,
@@ -128973,7 +119581,7 @@ Metabolic networks can be analyzed by means of stoichiometric and constraint-bas
     biotools:primaryContact "Paul Macklin" .
 
 <https://bio.tools/cellphonedb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2830,
@@ -128990,8 +119598,35 @@ Metabolic networks can be analyzed by means of stoichiometric and constraint-bas
     sc:name "CellPhoneDB" ;
     sc:url "http://www.CellPhoneDB.org" .
 
+<https://bio.tools/cellphy> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Workbench",
+        "Workflow" ;
+    sc:applicationSubCategory edam:topic_0084,
+        edam:topic_0199,
+        edam:topic_0610,
+        edam:topic_0625,
+        edam:topic_3676 ;
+    sc:citation <https://doi.org/10.1186/S13059-021-02583-W>,
+        "pmcid:PMC8790911",
+        "pubmed:35081992" ;
+    sc:description "CellPhy: accurate and fast probabilistic inference of single-cell phylogenies." ;
+    sc:featureList edam:operation_0323,
+        edam:operation_0567,
+        edam:operation_3196,
+        edam:operation_3227,
+        edam:operation_3431 ;
+    sc:isAccessibleForFree true ;
+    sc:license "AGPL-3.0" ;
+    sc:name "CellPhy" ;
+    sc:operatingSystem "Linux",
+        "Mac" ;
+    sc:softwareHelp <https://github.com/amkozlov/cellphy/blob/master/doc/CellPhy-Tutorial.pdf> ;
+    sc:url "https://github.com/amkozlov/cellphy" .
+
 <https://bio.tools/cellpose> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0749,
@@ -129008,8 +119643,45 @@ Metabolic networks can be analyzed by means of stoichiometric and constraint-bas
     sc:softwareHelp <https://cellpose.readthedocs.io/en/latest/> ;
     sc:url "http://www.cellpose.org" .
 
+<https://bio.tools/cellppd> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:citation <https://doi.org/10.1186/1479-5876-11-74>,
+        "pmcid:PMC3615965",
+        "pubmed:23517638" ;
+    sc:description "CellPPD is an in silico method, which is developed to predict and design efficient cell penetrating peptides (CPPs). The main dataset used in this method consists of 708 experimentally validated CPPs." ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "cellppd" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/cellppd/> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/cellppd/" .
+
+<https://bio.tools/cellppdmod> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_3374,
+        edam:topic_3375,
+        edam:topic_3474,
+        edam:topic_3930 ;
+    sc:citation <https://doi.org/10.1007/978-1-0716-1752-6_4>,
+        "pubmed:34766282" ;
+    sc:description "CellPPD-Mod is an in silico method, which is developed to predict efficient modified cell penetrating peptides (CellPPD-Mods)." ;
+    sc:featureList edam:operation_0252,
+        edam:operation_0418,
+        edam:operation_4009 ;
+    sc:isAccessibleForFree true ;
+    sc:name "CellPPDMod" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://webs.iiitd.edu.in/raghava/cellppdmod/" .
+
 <https://bio.tools/cellprofiler_analyst> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Library" ;
     sc:applicationSubCategory edam:topic_0625,
@@ -129031,7 +119703,7 @@ Metabolic networks can be analyzed by means of stoichiometric and constraint-bas
     sc:url "https://cellprofileranalyst.org/" .
 
 <https://bio.tools/cellrank> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0749,
@@ -129051,7 +119723,7 @@ Metabolic networks can be analyzed by means of stoichiometric and constraint-bas
     sc:url "https://github.com/theislab/cellrank" .
 
 <https://bio.tools/cellrouter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0625,
@@ -129076,18 +119748,15 @@ Perform quality control on genes and cells.""" ;
 
 <https://bio.tools/cellscape> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2523" ;
-            sc:name "Phylogenetic data" ;
-            sc:sameAs "http://edamontology.org/data_2523" ],
+            sc:additionalType "http://edamontology.org/data_2914" ;
+            sc:name "Sequence features metadata" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2914" ;
-            sc:name "Sequence features metadata" ;
-            sc:sameAs "http://edamontology.org/data_2914" ] ;
+            sc:additionalType "http://edamontology.org/data_2523" ;
+            sc:name "Phylogenetic data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1636" ;
-            sc:name "Heat map" ;
-            sc:sameAs "http://edamontology.org/data_1636" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1636" ;
+            sc:name "Heat map" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_2229,
@@ -129109,7 +119778,7 @@ Perform quality control on genes and cells.""" ;
     biotools:primaryContact "Maia Smith" .
 
 <https://bio.tools/cellscore> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0203,
@@ -129128,8 +119797,30 @@ Perform quality control on genes and cells.""" ;
     sc:url "http://bioconductor.org/packages/release/bioc/html/CellScore.html" ;
     biotools:primaryContact "Nancy Mah" .
 
+<https://bio.tools/cellseg> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Desktop application" ;
+    sc:applicationSubCategory edam:topic_0769,
+        edam:topic_3382,
+        edam:topic_3474,
+        edam:topic_3934 ;
+    sc:citation <https://doi.org/10.1186/S12859-022-04570-9>,
+        "pmcid:PMC8767664",
+        "pubmed:35042474" ;
+    sc:description "A robust, pre-trained nucleus segmentation and pixel quantification software for highly multiplexed fluorescence images." ;
+    sc:featureList edam:operation_3435,
+        edam:operation_3443,
+        edam:operation_3799 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "CellSeg" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://michaellee1.github.io/CellSegSite/index.html" .
+
 <https://bio.tools/cellsnp-lite> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2885 ;
     sc:citation <https://doi.org/10.1101/2020.12.31.424913> ;
@@ -129141,8 +119832,17 @@ Perform quality control on genes and cells.""" ;
     sc:softwareHelp <https://cellsnp-lite.readthedocs.io/> ;
     sc:url "https://github.com/single-cell-genetics/cellsnp-lite" .
 
+<https://bio.tools/cellsys> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:citation <https://doi.org/10.1093/bioinformatics/btq437> ;
+    sc:description "CellSys is a modular software tool for efficient off-lattice simulation of growth and organization processes in multicellular systems in two and three dimensions. It implements an agent-based model that approximates cells as isotropic, elastic and adhesive objects. Cell migration is modeled by an equation of motion for each cell. The software includes many modules specifically tailored to support the simulation and analysis of virtual tissues including real-time 3D visualization and VRML 2.0 support. All cell and environment parameters can be independently varied which facilitates species specific simulations and allows for detailed analyses of growth dynamics and links between cellular and multicellular phenotypes." ;
+    sc:name "CellSys" ;
+    sc:softwareHelp <https://www.hoehme.com/images/Software/cellsys_user_guide.pdf> ;
+    sc:softwareVersion "5.0" ;
+    sc:url "https://www.hoehme.com/software/tisim" .
+
 <https://bio.tools/celltalkdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0219,
@@ -129160,7 +119860,7 @@ Perform quality control on genes and cells.""" ;
     sc:url "http://tcm.zju.edu.cn/celltalkdb" .
 
 <https://bio.tools/celltracer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3385 ;
@@ -129176,7 +119876,7 @@ Perform quality control on genes and cells.""" ;
     sc:url "http://www.stat.duke.edu/research/software/west/celltracer/" .
 
 <https://bio.tools/celltracker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Suite" ;
     sc:applicationSubCategory edam:topic_2269,
@@ -129193,7 +119893,7 @@ Perform quality control on genes and cells.""" ;
     sc:url "https://github.com/WangLabTHU/CellTracker" .
 
 <https://bio.tools/celltrans> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3299,
@@ -129213,7 +119913,7 @@ Perform quality control on genes and cells.""" ;
     biotools:primaryContact "Thomas Buder" .
 
 <https://bio.tools/celltree> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -129235,7 +119935,7 @@ Perform quality control on genes and cells.""" ;
     biotools:primaryContact "David duVerle" .
 
 <https://bio.tools/celluloid> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0199,
@@ -129251,7 +119951,7 @@ Perform quality control on genes and cells.""" ;
     sc:url "https://github.com/AlgoLab/celluloid/" .
 
 <https://bio.tools/cellvgae> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -129268,7 +119968,7 @@ Perform quality control on genes and cells.""" ;
     sc:url "https://github.com/davidbuterez/CellVGAE" .
 
 <https://bio.tools/cellwalker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3170,
@@ -129284,7 +119984,7 @@ Perform quality control on genes and cells.""" ;
     sc:url "https://github.com/PollardLab/CellWalker" .
 
 <https://bio.tools/cellwalkr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_2229,
@@ -129296,7 +119996,7 @@ Perform quality control on genes and cells.""" ;
     sc:url "https://github.com/PFPrzytycki/CellWalkR" .
 
 <https://bio.tools/cellxgene> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3308 ;
@@ -129311,7 +120011,7 @@ Perform quality control on genes and cells.""" ;
     sc:url "https://github.com/chanzuckerberg/cellxgene" .
 
 <https://bio.tools/cellxpress> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2229,
@@ -129330,7 +120030,7 @@ Perform quality control on genes and cells.""" ;
     biotools:primaryContact "Lit-Hsin Loo" .
 
 <https://bio.tools/celseq2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3308 ;
@@ -129346,7 +120046,7 @@ Perform quality control on genes and cells.""" ;
     biotools:primaryContact "Itai Yanai" .
 
 <https://bio.tools/cem> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0196,
@@ -129363,7 +120063,7 @@ Perform quality control on genes and cells.""" ;
     sc:url "http://alumni.cs.ucr.edu/~liw/cem.html" .
 
 <https://bio.tools/cemda> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_2640,
@@ -129381,7 +120081,7 @@ Perform quality control on genes and cells.""" ;
     sc:url "https://github.com/liubailong/CEMDA" .
 
 <https://bio.tools/cemitool> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3308,
@@ -129401,7 +120101,7 @@ Perform quality control on genes and cells.""" ;
     biotools:primaryContact "Helder Nakaya" .
 
 <https://bio.tools/cemrgapp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3335,
         edam:topic_3384,
@@ -129422,7 +120122,7 @@ Perform quality control on genes and cells.""" ;
     sc:url "http://www.cemrgapp.com" .
 
 <https://bio.tools/cen-tools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0203,
@@ -129439,7 +120139,7 @@ Perform quality control on genes and cells.""" ;
     sc:url "https://gitlab.ebi.ac.uk/cansu/centools_pycen" .
 
 <https://bio.tools/cena> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0625,
@@ -129453,7 +120153,7 @@ Perform quality control on genes and cells.""" ;
     sc:url "https://github.com/mayalevy/CENA" .
 
 <https://bio.tools/cenet-omnibus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_3360,
@@ -129471,7 +120171,7 @@ Perform quality control on genes and cells.""" ;
     sc:url "https://github.com/GaoLabXDU/CeNetOmnibus" .
 
 <https://bio.tools/censcyt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3379,
@@ -129487,14 +120187,12 @@ Perform quality control on genes and cells.""" ;
 
 <https://bio.tools/censor> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1276" ;
-            sc:name "Nucleic acid features" ;
-            sc:sameAs "http://edamontology.org/data_1276" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1276" ;
+            sc:name "Nucleic acid features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0157 ;
     sc:author "Oleksiy Kohany",
@@ -129516,7 +120214,7 @@ Perform quality control on genes and cells.""" ;
     biotools:primaryContact "Web Production" .
 
 <https://bio.tools/centdist> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3169,
@@ -129533,7 +120231,7 @@ Perform quality control on genes and cells.""" ;
     biotools:primaryContact "Centdist webmaster" .
 
 <https://bio.tools/centiscape> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0602 ;
@@ -129554,7 +120252,7 @@ Perform quality control on genes and cells.""" ;
     biotools:primaryContact "Giacomina Bruttomesso" .
 
 <https://bio.tools/centiserver> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library",
         "Web application" ;
@@ -129575,7 +120273,7 @@ Perform quality control on genes and cells.""" ;
     biotools:primaryContact "Mahdi Jalili" .
 
 <https://bio.tools/centomd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
@@ -129600,7 +120298,7 @@ Perform quality control on genes and cells.""" ;
     sc:url "https://www.centogene.com/mutation-database-centomd.html" .
 
 <https://bio.tools/centrifuge> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3174,
         edam:topic_3301 ;
@@ -129615,7 +120313,7 @@ Perform quality control on genes and cells.""" ;
     sc:url "https://ccb.jhu.edu/software/centrifuge/" .
 
 <https://bio.tools/centroFlye> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0196 ;
     sc:citation <https://doi.org/10.1101/772103> ;
     sc:description "Assembling Centromeres with Long Error-Prone Reads | An algorithm for centromere assembly using long error-prone reads | Scripts for analyses and figures for centroFlye manuscript | centroFlye is an algorithm for centromere assembly using long error-prone reads. Currently it supports assembly of a human centromere X. Here we show how to apply it for the centromere X of the CHM13hTERT human cell line | Results_and_several_Appendices.ipynb replicates Results and Appendices: Analysis of centromeric reads that do not map to centroFlye assembly, Hanging index test, and Breakpoint test" ;
@@ -129625,7 +120323,7 @@ Perform quality control on genes and cells.""" ;
     sc:url "https://github.com/seryrzu/centroFlye" .
 
 <https://bio.tools/centroidfold> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0097,
@@ -129647,7 +120345,7 @@ Perform quality control on genes and cells.""" ;
     biotools:primaryContact "Sato K." .
 
 <https://bio.tools/centroidhomfold-last> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0082,
@@ -129669,7 +120367,7 @@ Perform quality control on genes and cells.""" ;
     biotools:primaryContact "Hamada M" .
 
 <https://bio.tools/centromerearchitect> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_2815,
@@ -129686,14 +120384,12 @@ Perform quality control on genes and cells.""" ;
 
 <https://bio.tools/centrosomedb> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1026" ;
-            sc:name "Gene symbol" ;
-            sc:sameAs "http://edamontology.org/data_1026" ],
+            sc:additionalType "http://edamontology.org/data_1026" ;
+            sc:name "Gene symbol" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1033" ;
-            sc:name "Ensembl gene ID" ;
-            sc:sameAs "http://edamontology.org/data_1033" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1033" ;
+            sc:name "Ensembl gene ID" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_3047 ;
     sc:citation <https://doi.org/10.1093/nar/gkt1126>,
@@ -129711,7 +120407,7 @@ Perform quality control on genes and cells.""" ;
     biotools:primaryContact "Joan Segura" .
 
 <https://bio.tools/cepa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2269,
@@ -129733,7 +120429,7 @@ Perform quality control on genes and cells.""" ;
     biotools:primaryContact "Zuguang Gu" .
 
 <https://bio.tools/ceps> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_3068,
@@ -129752,7 +120448,7 @@ Perform quality control on genes and cells.""" ;
     biotools:primaryContact <https://orcid.org/0000-0002-2199-2091> .
 
 <https://bio.tools/cepz> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0769 ;
@@ -129765,7 +120461,7 @@ Perform quality control on genes and cells.""" ;
     sc:url "https://github.com/YanZheng-16/CEPZ_DHS/" .
 
 <https://bio.tools/ceqer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0622,
@@ -129784,7 +120480,7 @@ Perform quality control on genes and cells.""" ;
     biotools:primaryContact "Rocco Piazza" .
 
 <https://bio.tools/cerc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0218,
         edam:topic_3334,
@@ -129802,7 +120498,7 @@ Perform quality control on genes and cells.""" ;
     sc:url "https://newton.isye.gatech.edu/CERC1/" .
 
 <https://bio.tools/cerc2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3379,
         edam:topic_3384,
@@ -129819,8 +120515,32 @@ Perform quality control on genes and cells.""" ;
     sc:softwareVersion "2.0" ;
     sc:url "https://www.welcome.alviss.ai/#/cvecalculator" .
 
+<https://bio.tools/cerealestdb> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Workflow" ;
+    sc:applicationSubCategory edam:topic_0089,
+        edam:topic_0602,
+        edam:topic_3170,
+        edam:topic_3512,
+        edam:topic_3810 ;
+    sc:citation <https://doi.org/10.3389/FGENE.2022.842868>,
+        "pmcid:PMC8907976",
+        "pubmed:35281847" ;
+    sc:description "The CerealESTdb, a user-friendly, searchable, and interactive database has been developed with a primary goal to provide information on assembled and annotated ESTs from four major crop plants, namely wheat, rice, maize, and sorghum under multiple environmental stresses including cold, heat, drought, and salt stress as well as on the application of ABA." ;
+    sc:featureList edam:operation_0526,
+        edam:operation_0533,
+        edam:operation_3929 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "CerealESTdb" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://cabgrid.res.in/CerealESTDb" .
+
 <https://bio.tools/cerebroviz> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3334 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btw726>,
@@ -129838,7 +120558,7 @@ Perform quality control on genes and cells.""" ;
     biotools:primaryContact "Ethan Bahl" .
 
 <https://bio.tools/cerec> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3303,
         edam:topic_3384,
@@ -129856,7 +120576,7 @@ Perform quality control on genes and cells.""" ;
     sc:url "https://my.cerec.com/en/products/cerec-sw-4-6.html" .
 
 <https://bio.tools/cerena> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3332,
@@ -129875,7 +120595,7 @@ Perform quality control on genes and cells.""" ;
     biotools:primaryContact "Support" .
 
 <https://bio.tools/ceres> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0611,
         edam:topic_2275 ;
@@ -129893,30 +120613,29 @@ Perform quality control on genes and cells.""" ;
 
 <https://bio.tools/cermit> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2042" ;
-            sc:name "Evidence" ;
-            sc:sameAs "http://edamontology.org/data_2042" ],
+            sc:additionalType "http://edamontology.org/data_1050" ;
+            sc:encodingFormat "http://edamontology.org/format_3751" ;
+            sc:name "File name" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2854" ;
-            sc:name "Position-specific scoring matrix" ;
-            sc:sameAs "http://edamontology.org/data_2854" ],
+            sc:additionalType "http://edamontology.org/data_2975" ;
+            sc:encodingFormat "http://edamontology.org/format_3751" ;
+            sc:name "Nucleic acid sequence (raw)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1050" ;
-            sc:name "File name" ;
-            sc:sameAs "http://edamontology.org/data_1050" ],
+            sc:additionalType "http://edamontology.org/data_2854" ;
+            sc:name "Position-specific scoring matrix" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1050" ;
-            sc:name "File name" ;
-            sc:sameAs "http://edamontology.org/data_1050" ],
+            sc:additionalType "http://edamontology.org/data_2042" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Evidence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2975" ;
-            sc:name "Nucleic acid sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_2975" ] ;
+            sc:additionalType "http://edamontology.org/data_1050" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "File name" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2762" ;
-            sc:name "Sequence signature report" ;
-            sc:sameAs "http://edamontology.org/data_2762" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2762" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Sequence signature report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3511 ;
     sc:citation <https://doi.org/10.1186/gb-2010-11-2-r19> ;
@@ -129931,7 +120650,7 @@ Perform quality control on genes and cells.""" ;
     sc:url "https://ohlerlab.mdc-berlin.de/software/cERMIT_82/" .
 
 <https://bio.tools/cernanetsim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -129952,7 +120671,7 @@ Perform quality control on genes and cells.""" ;
     biotools:primaryContact <https://orcid.org/0000-0002-0028-2453> .
 
 <https://bio.tools/cernaseek> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0634,
@@ -129970,8 +120689,46 @@ Perform quality control on genes and cells.""" ;
     sc:name "CeRNASeek" ;
     sc:url "https://CRAN.R-project.org/package=CeRNASeek" .
 
+<https://bio.tools/cernashiny> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0634,
+        edam:topic_0659,
+        edam:topic_3300,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.3389/FMOLB.2022.865408>,
+        "pmcid:PMC9136144",
+        "pubmed:35647026" ;
+    sc:description "ceRNAshiny, an interactive R/Shiny application, which integrates widely used computational methods and databases to provide and visualize the construction and analysis of ceRNA network, including differential gene analysis and functional annotation." ;
+    sc:featureList edam:operation_3223,
+        edam:operation_3792,
+        edam:operation_3925 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "ceRNAshiny" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://cerna.shinyapps.io/cerna_shiny/" .
+
+<https://bio.tools/certificatechain> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3063,
+        edam:topic_3071 ;
+    sc:citation <https://doi.org/10.1093/JAMIAOPEN/OOAC019>,
+        "pmcid:PMC9097703",
+        "pubmed:35571362" ;
+    sc:description "Decentralized healthcare training certificate management system using blockchain and smart contracts." ;
+    sc:featureList edam:operation_2422 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "CertificateChain" ;
+    sc:url "https://doi.org/10.5281/zenodo.6257094" .
+
 <https://bio.tools/cerulean> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196 ;
     sc:citation <https://doi.org/10.1007/978-3-642-40453-5_27> ;
@@ -129984,7 +120741,7 @@ Perform quality control on genes and cells.""" ;
     sc:url "http://sourceforge.net/projects/ceruleanassembler/" .
 
 <https://bio.tools/cesam> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0204 ;
     sc:author "Joachim Weischenfeldt" ;
@@ -130003,7 +120760,7 @@ Perform quality control on genes and cells.""" ;
     biotools:primaryContact "Support" .
 
 <https://bio.tools/cetf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0749,
@@ -130020,7 +120777,7 @@ Perform quality control on genes and cells.""" ;
     sc:url "https://bioconductor.org/packages/CeTF" .
 
 <https://bio.tools/cetoolbox> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3047,
         edam:topic_3068,
         edam:topic_3520 ;
@@ -130035,26 +120792,26 @@ Perform quality control on genes and cells.""" ;
 
 <https://bio.tools/ceu_mass_mediator> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0844" ;
-            sc:name "Molecular mass" ;
-            sc:sameAs "http://edamontology.org/data_0844" ],
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Mass spectrometry spectra" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
+            sc:additionalType "http://edamontology.org/data_0844" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Molecular mass" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1772" ;
-            sc:name "Score" ;
-            sc:sameAs "http://edamontology.org/data_1772" ],
+            sc:additionalType "http://edamontology.org/data_1772" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Score" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2639" ;
-            sc:name "PubChem ID" ;
-            sc:sameAs "http://edamontology.org/data_2639" ],
+            sc:additionalType "http://edamontology.org/data_2639" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "PubChem ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2622" ;
-            sc:name "Compound ID (HMDB)" ;
-            sc:sameAs "http://edamontology.org/data_2622" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2622" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Compound ID (HMDB)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3172 ;
     sc:citation <https://doi.org/10.1016/j.jpba.2018.02.046>,
@@ -130073,7 +120830,7 @@ Perform quality control on genes and cells.""" ;
     sc:url "http://ceumass.eps.uspceu.es/" .
 
 <https://bio.tools/cexor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0128,
@@ -130093,7 +120850,7 @@ Perform quality control on genes and cells.""" ;
     biotools:primaryContact "Pedro Madrigal" .
 
 <https://bio.tools/cfDNA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_2640,
@@ -130110,18 +120867,18 @@ Perform quality control on genes and cells.""" ;
 
 <https://bio.tools/cfassay> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2082" ;
-            sc:name "Matrix" ;
-            sc:sameAs "http://edamontology.org/data_2082" ] ;
+            sc:additionalType "http://edamontology.org/data_2082" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Matrix" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ],
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Plot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1772" ;
-            sc:name "Score" ;
-            sc:sameAs "http://edamontology.org/data_1772" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1772" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Score" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2229,
@@ -130140,7 +120897,7 @@ Perform quality control on genes and cells.""" ;
     biotools:primaryContact "Herbert Braselmann" .
 
 <https://bio.tools/cfbi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3520 ;
@@ -130152,7 +120909,7 @@ Perform quality control on genes and cells.""" ;
     sc:url "https://github.com/z-x-yang/CFBI" .
 
 <https://bio.tools/cfdnapipe> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library",
         "Workflow" ;
@@ -130174,7 +120931,7 @@ Perform quality control on genes and cells.""" ;
         "Lei Wei" .
 
 <https://bio.tools/cfinder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3168,
@@ -130192,7 +120949,7 @@ Perform quality control on genes and cells.""" ;
     biotools:primaryContact "Norbert Niklas" .
 
 <https://bio.tools/cfm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2229,
@@ -130210,7 +120967,7 @@ Perform quality control on genes and cells.""" ;
     biotools:primaryContact "Yulia A. Medvedeva" .
 
 <https://bio.tools/cfm-id> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0154,
@@ -130231,7 +120988,7 @@ Perform quality control on genes and cells.""" ;
     biotools:primaryContact "Contact form" .
 
 <https://bio.tools/cfsp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0199,
         edam:topic_0623,
@@ -130250,32 +121007,52 @@ Perform quality control on genes and cells.""" ;
     sc:name "CFSP" ;
     sc:url "https://github.com/HePeng2016/CFSP" .
 
+<https://bio.tools/cfvisual> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0623,
+        edam:topic_0749,
+        edam:topic_3293,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.1186/S12859-022-04707-W>,
+        "pmcid:PMC9102596",
+        "pubmed:35562653" ;
+    sc:description "An interactive desktop platform for drawing gene structure and protein architecture" ;
+    sc:featureList edam:operation_0326,
+        edam:operation_0551,
+        edam:operation_2475 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "CFVisual" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/ChenHuilong1223/CFVisual/" .
+
 <https://bio.tools/cg-cat> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2975" ;
-            sc:name "Nucleic acid sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_2975" ],
+            sc:additionalType "http://edamontology.org/data_2975" ;
+            sc:encodingFormat "http://edamontology.org/format_1954" ;
+            sc:name "Nucleic acid sequence (raw)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2975" ;
-            sc:name "Nucleic acid sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_2975" ],
+            sc:additionalType "http://edamontology.org/data_2975" ;
+            sc:encodingFormat "http://edamontology.org/format_1954" ;
+            sc:name "Nucleic acid sequence (raw)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0872" ;
-            sc:name "Phylogenetic tree" ;
-            sc:sameAs "http://edamontology.org/data_0872" ] ;
+            sc:additionalType "http://edamontology.org/data_0872" ;
+            sc:encodingFormat "http://edamontology.org/format_1910" ;
+            sc:name "Phylogenetic tree" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3181" ;
-            sc:name "Sequence assembly report" ;
-            sc:sameAs "http://edamontology.org/data_3181" ],
+            sc:additionalType "http://edamontology.org/data_3181" ;
+            sc:name "Sequence assembly report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0862" ;
-            sc:name "Dotplot" ;
-            sc:sameAs "http://edamontology.org/data_0862" ],
+            sc:additionalType "http://edamontology.org/data_3181" ;
+            sc:name "Sequence assembly report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3181" ;
-            sc:name "Sequence assembly report" ;
-            sc:sameAs "http://edamontology.org/data_3181" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0862" ;
+            sc:name "Dotplot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0196 ;
     sc:author "Peter Husemann" ;
@@ -130299,7 +121076,7 @@ Perform quality control on genes and cells.""" ;
     sc:url "http://bibiserv.cebitec.uni-bielefeld.de/cgcat" .
 
 <https://bio.tools/cg-target> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0602,
@@ -130320,7 +121097,7 @@ CG-TARGET is a collection of R scripts to be used for the purpose of predicting
     sc:url "https://github.com/csbio/CG-TARGET" .
 
 <https://bio.tools/cga-bni> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0203,
@@ -130343,7 +121120,7 @@ CG-TARGET is a collection of R scripts to be used for the purpose of predicting
     sc:url "https://github.com/csclab/CGA-BNI" .
 
 <https://bio.tools/cga_tools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0622,
@@ -130362,7 +121139,7 @@ CG-TARGET is a collection of R scripts to be used for the purpose of predicting
     sc:url "http://cgatools.sourceforge.net/docs/1.8.0/" .
 
 <https://bio.tools/cgap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2640,
@@ -130383,7 +121160,7 @@ CG-TARGET is a collection of R scripts to be used for the purpose of predicting
     biotools:primaryContact "NCICB Application Support" .
 
 <https://bio.tools/cgatcpred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0202,
         edam:topic_0209,
         edam:topic_2840,
@@ -130399,8 +121176,30 @@ CG-TARGET is a collection of R scripts to be used for the purpose of predicting
     sc:url "https://github.com/zhc940702/CGATCPred" ;
     biotools:primaryContact <https://orcid.org/0000-0003-1516-0480> .
 
+<https://bio.tools/cgb> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0089,
+        edam:topic_0199,
+        edam:topic_3168,
+        edam:topic_3299,
+        edam:topic_3305 ;
+    sc:citation <https://doi.org/10.1093/BIB/BBAB583>,
+        "pmcid:PMC8921643",
+        "pubmed:35043153" ;
+    sc:description "Coronavirus GenBrowser for monitoring the transmission and evolution of SARS-CoV-2." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3431,
+        edam:operation_3695 ;
+    sc:isAccessibleForFree true ;
+    sc:name "CGB" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://www.biosino.org/cgb/" .
+
 <https://bio.tools/cgbayesnets> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3569 ;
@@ -130418,7 +121217,7 @@ CG-TARGET is a collection of R scripts to be used for the purpose of predicting
     biotools:primaryContact "Contact form" .
 
 <https://bio.tools/cgbind> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0176 ;
     sc:citation <https://doi.org/10.26434/CHEMRXIV.9576644.V1> ;
@@ -130432,7 +121231,7 @@ CG-TARGET is a collection of R scripts to be used for the purpose of predicting
     sc:url "https://github.com/duartegroup/cgbind" .
 
 <https://bio.tools/cgd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0621,
@@ -130455,7 +121254,7 @@ CG-TARGET is a collection of R scripts to be used for the purpose of predicting
     biotools:primaryContact "Contact form" .
 
 <https://bio.tools/cgd-crispr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_3315,
@@ -130473,10 +121272,10 @@ CG-TARGET is a collection of R scripts to be used for the purpose of predicting
 
 <https://bio.tools/cgdnaweb> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2526" ;
-            sc:name "Text data" ;
-            sc:sameAs "http://edamontology.org/data_2526" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2526" ;
+            sc:encodingFormat "http://edamontology.org/format_1207" ;
+            sc:name "Text data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0097 ;
@@ -130491,7 +121290,7 @@ CG-TARGET is a collection of R scripts to be used for the purpose of predicting
     biotools:primaryContact "Prof. John H. Maddocks" .
 
 <https://bio.tools/cgds-cancer-genomics-toolbox> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0622,
@@ -130508,7 +121307,7 @@ CG-TARGET is a collection of R scripts to be used for the purpose of predicting
     biotools:primaryContact "Benjamin Gross" .
 
 <https://bio.tools/cgen> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3053,
@@ -130527,7 +121326,7 @@ CG-TARGET is a collection of R scripts to be used for the purpose of predicting
     biotools:primaryContact "William Wheeler" .
 
 <https://bio.tools/cgga> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_3170,
@@ -130543,7 +121342,7 @@ CG-TARGET is a collection of R scripts to be used for the purpose of predicting
     sc:url "http://www.cgga.org.cn" .
 
 <https://bio.tools/cghbase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3518 ;
@@ -130560,7 +121359,7 @@ CG-TARGET is a collection of R scripts to be used for the purpose of predicting
     biotools:primaryContact "Mark van de Wiel" .
 
 <https://bio.tools/cghcall> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2640 ;
@@ -130578,7 +121377,7 @@ CG-TARGET is a collection of R scripts to be used for the purpose of predicting
     biotools:primaryContact "Mark van de Wiel" .
 
 <https://bio.tools/cgheliparm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0654,
@@ -130595,7 +121394,7 @@ CG-TARGET is a collection of R scripts to be used for the purpose of predicting
     biotools:primaryContact "I. Faustino" .
 
 <https://bio.tools/cghmcr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -130615,7 +121414,7 @@ CG-TARGET is a collection of R scripts to be used for the purpose of predicting
     biotools:primaryContact "J. Zhang" .
 
 <https://bio.tools/cghnormaliter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3518 ;
@@ -130634,7 +121433,7 @@ CG-TARGET is a collection of R scripts to be used for the purpose of predicting
     biotools:primaryContact "Bart P.P. van Houte" .
 
 <https://bio.tools/cghra> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0634,
@@ -130654,7 +121453,7 @@ CG-TARGET is a collection of R scripts to be used for the purpose of predicting
         "Sylvain Marescha" .
 
 <https://bio.tools/cghregions> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3518 ;
@@ -130673,30 +121472,30 @@ CG-TARGET is a collection of R scripts to be used for the purpose of predicting
 
 <https://bio.tools/cgi> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ],
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence variations" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3275" ;
-            sc:name "Phenotype name" ;
-            sc:sameAs "http://edamontology.org/data_3275" ],
+            sc:additionalType "http://edamontology.org/data_3275" ;
+            sc:encodingFormat "http://edamontology.org/format_1964" ;
+            sc:name "Phenotype name" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ],
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence variations" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3275" ;
-            sc:name "Phenotype name" ;
-            sc:sameAs "http://edamontology.org/data_3275" ] ;
+            sc:additionalType "http://edamontology.org/data_3275" ;
+            sc:encodingFormat "http://edamontology.org/format_1964" ;
+            sc:name "Phenotype name" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1270" ;
-            sc:name "Feature table" ;
-            sc:sameAs "http://edamontology.org/data_1270" ],
+            sc:additionalType "http://edamontology.org/data_1270" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Feature table" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2080" ;
-            sc:name "Database search results" ;
-            sc:sameAs "http://edamontology.org/data_2080" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2080" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Database search results" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web API",
         "Web application" ;
@@ -130723,7 +121522,7 @@ CG-TARGET is a collection of R scripts to be used for the purpose of predicting
     sc:url "https://www.cancergenomeinterpreter.org/" .
 
 <https://bio.tools/cginet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0602,
         edam:topic_2275,
@@ -130739,7 +121538,7 @@ CG-TARGET is a collection of R scripts to be used for the purpose of predicting
     sc:url "https://github.com/WebyGit/CGINet" .
 
 <https://bio.tools/cglmm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3315,
@@ -130755,7 +121554,7 @@ CG-TARGET is a collection of R scripts to be used for the purpose of predicting
     sc:url "https://github.com/huthvincent/cGLMM" .
 
 <https://bio.tools/cgmanalysis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3379,
         edam:topic_3407 ;
@@ -130773,7 +121572,7 @@ CG-TARGET is a collection of R scripts to be used for the purpose of predicting
     biotools:primaryContact "Tim Vigers" .
 
 <https://bio.tools/cgmaptools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0199,
@@ -130791,7 +121590,7 @@ CG-TARGET is a collection of R scripts to be used for the purpose of predicting
     biotools:primaryContact "Weilong Guo" .
 
 <https://bio.tools/cgmlstattaiwan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_3305,
@@ -130805,8 +121604,27 @@ CG-TARGET is a collection of R scripts to be used for the purpose of predicting
     sc:name "cgMLSTatTaiwan" ;
     sc:url "http://rdvd.cdc.gov.tw/cgMLST" .
 
+<https://bio.tools/cgmquantify> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0769,
+        edam:topic_3068,
+        edam:topic_3303,
+        edam:topic_3360 ;
+    sc:citation <https://doi.org/10.1109/OJEMB.2021.3105816>,
+        "pmcid:PMC8901031",
+        "pubmed:35402978" ;
+    sc:description "The cgmquantify software resource enables comprehensive analysis of continuous glucose monitor data with clinically validated metrics and easy to implement visualizations." ;
+    sc:featureList edam:operation_0337 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "cgmquantify" ;
+    sc:operatingSystem "Mac",
+        "Windows" ;
+    sc:url "https://pypi.org/project/cgmquantify/" .
+
 <https://bio.tools/cgmtsa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:citation <https://doi.org/10.1101/2020.07.06.174748> ;
     sc:description "Continuous Glucose Monitoring Time Series Data Analysis (CGMTSA)  is an R package for continuous glucose monitoring time series data analysis." ;
     sc:featureList edam:operation_0337,
@@ -130816,8 +121634,21 @@ CG-TARGET is a collection of R scripts to be used for the purpose of predicting
     sc:name "CGMTSA" ;
     sc:url "https://github.com/RyanJ-Shao/CGMTSA" .
 
+<https://bio.tools/cgnet> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workbench" ;
+    sc:applicationSubCategory edam:topic_0634,
+        edam:topic_3452,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1002/JBIO.202200067>,
+        "pubmed:35704010" ;
+    sc:description "A novel end-to-end three-stage channel and position attention (CPA) module integrated graph reasoning convolutional neural network (CGNet) for retinal OCTA vessel segmentation." ;
+    sc:license "Not licensed" ;
+    sc:name "CGNet" ;
+    sc:url "https://github.com/GE-123-cpu/CGnet-for-vessel-segmentation" .
+
 <https://bio.tools/cgpe> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -130834,7 +121665,7 @@ CG-TARGET is a collection of R scripts to be used for the purpose of predicting
     sc:url "https://cgpe.soic.iupui.edu" .
 
 <https://bio.tools/cgqtl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0625 ;
     sc:citation <https://doi.org/10.1186/1471-2164-8-183>,
@@ -130849,8 +121680,31 @@ CG-TARGET is a collection of R scripts to be used for the purpose of predicting
         "Windows" ;
     sc:url "http://cowry.agri.huji.ac.il/QTLMAP/qtlmap.htm" .
 
+<https://bio.tools/cgrdb2> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0593,
+        edam:topic_3047,
+        edam:topic_3314,
+        edam:topic_3489 ;
+    sc:citation <https://doi.org/10.1021/ACS.JCIM.1C01105>,
+        "pubmed:34843251" ;
+    sc:description "CGRdb2 is a Python package connecting to a PostgreSQL database that enables native searches for molecules and reactions without complicated SQL syntax." ;
+    sc:featureList edam:operation_1812,
+        edam:operation_2421,
+        edam:operation_2422,
+        edam:operation_3938 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "CGRdb2" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/icredd-cheminfo/CGRdb2" .
+
 <https://bio.tools/cgrnb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0204,
@@ -130869,7 +121723,7 @@ CG-TARGET is a collection of R scripts to be used for the purpose of predicting
     biotools:primaryContact "Webmaster" .
 
 <https://bio.tools/cgrs-gastric-cancer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2640,
@@ -130885,7 +121739,7 @@ CG-TARGET is a collection of R scripts to be used for the purpose of predicting
     sc:url "http://39.100.117.92/CGRS/" .
 
 <https://bio.tools/cgsea> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0634,
         edam:topic_2640,
@@ -130901,7 +121755,7 @@ CG-TARGET is a collection of R scripts to be used for the purpose of predicting
     sc:url "https://github.com/ChengSQXJTU/CGSEA" .
 
 <https://bio.tools/cgview> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0102,
@@ -130924,8 +121778,26 @@ CG-TARGET is a collection of R scripts to be used for the purpose of predicting
     biotools:primaryContact "Jason Grant",
         "Paul Stothard" .
 
+<https://bio.tools/ch-bin> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0196,
+        edam:topic_0769,
+        edam:topic_3174 ;
+    sc:citation <https://doi.org/10.1016/J.COMPBIOLCHEM.2022.107734>,
+        "pubmed:35964419" ;
+    sc:description "CH-Bin - metagenomic binning using convex-hull distance metric" ;
+    sc:featureList edam:operation_0310,
+        edam:operation_3432,
+        edam:operation_3798 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "CH-Bin" ;
+    sc:operatingSystem "Linux" ;
+    sc:url "https://github.com/kdsuneraavinash/CH-Bin" .
+
 <https://bio.tools/chainchecker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3071,
         edam:topic_3305,
@@ -130940,7 +121812,7 @@ CG-TARGET is a collection of R scripts to be used for the purpose of predicting
     sc:url "https://shiny.dide.imperial.ac.uk/chainchecker" .
 
 <https://bio.tools/chaincleaner> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0622,
@@ -130955,7 +121827,7 @@ CG-TARGET is a collection of R scripts to be used for the purpose of predicting
     biotools:primaryContact "Michael Hiller" .
 
 <https://bio.tools/chainy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3519,
@@ -130972,7 +121844,7 @@ CG-TARGET is a collection of R scripts to be used for the purpose of predicting
     biotools:primaryContact "Izaskun Mallona" .
 
 <https://bio.tools/chalpred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0209,
@@ -130989,7 +121861,7 @@ CG-TARGET is a collection of R scripts to be used for the purpose of predicting
     biotools:primaryContact <https://orcid.org/0000-0002-8902-2876> .
 
 <https://bio.tools/chamaeleo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0654,
@@ -131005,7 +121877,7 @@ CG-TARGET is a collection of R scripts to be used for the purpose of predicting
     sc:url "https://github.com/ntpz870817/Chamaeleo" .
 
 <https://bio.tools/champ> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3169,
@@ -131028,14 +121900,14 @@ CG-TARGET is a collection of R scripts to be used for the purpose of predicting
 
 <https://bio.tools/changegfffeatures> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1975" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1975" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_3168 ;
@@ -131054,30 +121926,30 @@ CG-TARGET is a collection of R scripts to be used for the purpose of predicting
 
 <https://bio.tools/changename> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
+            sc:name "Sequence trace" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2305" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2305" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
+            sc:name "Sequence trace" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:citation <https://doi.org/10.1093/nar/gkw343>,
@@ -131095,26 +121967,26 @@ CG-TARGET is a collection of R scripts to be used for the purpose of predicting
 
 <https://bio.tools/changetagname> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1975" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_3003" ;
+            sc:name "Annotation track" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2305" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1975" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:citation <https://doi.org/10.1093/nar/gkw343>,
@@ -131131,7 +122003,7 @@ CG-TARGET is a collection of R scripts to be used for the purpose of predicting
     biotools:primaryContact "Galaxy Support Team" .
 
 <https://bio.tools/chanjo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0622,
@@ -131148,22 +122020,22 @@ CG-TARGET is a collection of R scripts to be used for the purpose of predicting
 
 <https://bio.tools/channelsdb> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0968" ;
-            sc:name "Keyword" ;
-            sc:sameAs "http://edamontology.org/data_0968" ],
+            sc:additionalType "http://edamontology.org/data_1127" ;
+            sc:encodingFormat "http://edamontology.org/format_1477" ;
+            sc:name "PDB ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1127" ;
-            sc:name "PDB ID" ;
-            sc:sameAs "http://edamontology.org/data_1127" ] ;
+            sc:additionalType "http://edamontology.org/data_0968" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Keyword" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2878" ;
-            sc:name "Protein structural motif" ;
-            sc:sameAs "http://edamontology.org/data_2878" ],
+            sc:additionalType "http://edamontology.org/data_2878" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Protein structural motif" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2080" ;
-            sc:name "Database search results" ;
-            sc:sameAs "http://edamontology.org/data_2080" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2080" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Database search results" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0123,
         edam:topic_0128,
@@ -131202,14 +122074,12 @@ CG-TARGET is a collection of R scripts to be used for the purpose of predicting
 
 <https://bio.tools/chaos> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2887" ;
-            sc:name "Nucleic acid sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2887" ] ;
+            sc:additionalType "http://edamontology.org/data_2887" ;
+            sc:name "Nucleic acid sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2166" ;
-            sc:name "Sequence composition plot" ;
-            sc:sameAs "http://edamontology.org/data_2166" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2166" ;
+            sc:name "Sequence composition plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0157 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -131239,7 +122109,7 @@ CG-TARGET is a collection of R scripts to be used for the purpose of predicting
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/chaos.html" .
 
 <https://bio.tools/chaos_dialign> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0602,
@@ -131261,8 +122131,29 @@ CG-TARGET is a collection of R scripts to be used for the purpose of predicting
     sc:url "http://dialign.gobics.de/chaos-dialign-submission" ;
     biotools:primaryContact "Prof. Dr. Burkhard Morgenstern" .
 
+<https://bio.tools/chapao> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workflow" ;
+    sc:applicationSubCategory edam:topic_0194,
+        edam:topic_0659,
+        edam:topic_0780,
+        edam:topic_3293,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.1371/JOURNAL.PONE.0265360>,
+        "pmcid:PMC9015123",
+        "pubmed:35436292" ;
+    sc:description "CHAPAO (Compressing Alignments using Hierarchical and Probabilistic Approach) is a novel reference-based technique for compressing MSA files." ;
+    sc:featureList edam:operation_0492,
+        edam:operation_3198,
+        edam:operation_3211 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "CHAPAO" ;
+    sc:operatingSystem "Windows" ;
+    sc:url "https://github.com/ashiq24/CHAPAO" .
+
 <https://bio.tools/chaplin> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3053 ;
@@ -131275,7 +122166,7 @@ CG-TARGET is a collection of R scripts to be used for the purpose of predicting
     sc:url "http://genetics.emory.edu/labs/epstein/software/chaplin/index.html" .
 
 <https://bio.tools/characteristic_direction_method> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0749,
@@ -131295,18 +122186,15 @@ CG-TARGET is a collection of R scripts to be used for the purpose of predicting
 
 <https://bio.tools/charge> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1502" ;
-            sc:name "Amino acid index (chemical classes)" ;
-            sc:sameAs "http://edamontology.org/data_1502" ],
+            sc:additionalType "http://edamontology.org/data_1502" ;
+            sc:name "Amino acid index (chemical classes)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2886" ;
-            sc:name "Protein sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2886" ] ;
+            sc:additionalType "http://edamontology.org/data_2886" ;
+            sc:name "Protein sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1523" ;
-            sc:name "Protein charge plot" ;
-            sc:sameAs "http://edamontology.org/data_1523" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1523" ;
+            sc:name "Protein charge plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0123 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -131336,7 +122224,7 @@ CG-TARGET is a collection of R scripts to be used for the purpose of predicting
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/charge.html" .
 
 <https://bio.tools/charge_bioconductor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203 ;
     sc:description "Identifies genomic duplications or deletions from gene expression data." ;
@@ -131351,8 +122239,29 @@ CG-TARGET is a collection of R scripts to be used for the purpose of predicting
     sc:url "http://bioconductor.org/packages/release/bioc/html/CHARGE.html" ;
     biotools:primaryContact "Benjamin Mayne" .
 
+<https://bio.tools/charid> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0749,
+        edam:topic_2885,
+        edam:topic_3169,
+        edam:topic_3474,
+        edam:topic_3940 ;
+    sc:citation <https://doi.org/10.1093/BIB/BBAB602>,
+        "pubmed:35077535" ;
+    sc:description "CharID (Chromatin Accessible Region Interaction Detector), a two-step model that combines neural network and ensemble learning to predict OCR-mediated loops." ;
+    sc:featureList edam:operation_0445,
+        edam:operation_0481,
+        edam:operation_2437 ;
+    sc:isAccessibleForFree true ;
+    sc:name "CharID" ;
+    sc:operatingSystem "Linux",
+        "Mac" ;
+    sc:url "https://github.com/Yin-Shen/CharID" .
+
 <https://bio.tools/charm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3518,
@@ -131372,28 +122281,8 @@ CG-TARGET is a collection of R scripts to be used for the purpose of predicting
     sc:url "http://bioconductor.org/packages/release/bioc/html/charm.html" ;
     biotools:primaryContact "Peter Murakami" .
 
-<https://bio.tools/charm_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0199,
-        edam:topic_3315,
-        edam:topic_3372 ;
-    sc:citation <https://doi.org/10.7287/PEERJ.PREPRINTS.1138V2> ;
-    sc:description """The charming code that error messages are talking about.
-
-The intent of high test coverage is to ensure that the dark nooks and crannies of code are exercised and tested. In a language like Python this is especially important as syntax errors can lurk in unevaluated blocks, only to be discovered once they are finally executed. Bugs that present themselves as error messages mentioning a line of code which is unrelated to the cause of the bug can be difficult and time-consuming to fix when a developer must first determine the actual location of the fault. A new code metric, charm, is presented.
-
-||| HOMEPAGE MISSING!.
-
-||| NAME EQUAL TO (PUB. DIFFERENT) bio.tools/charm.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'charm cyclomatic', 'release-quality', 'cyclomatic', 'Python'""" ;
-    sc:featureList edam:operation_3435,
-        edam:operation_3659,
-        edam:operation_3799 ;
-    sc:name "charm_autogenerated" ;
-    sc:url "https://doi.org/10.7287/PEERJ.PREPRINTS.1138V2" .
-
 <https://bio.tools/charplant> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0780,
         edam:topic_3168,
@@ -131410,7 +122299,7 @@ The result of OCR (Open Chromatin Region) assay technologies such as DNase-seq a
     sc:url "https://github.com/Yin-Shen/CharPlant" .
 
 <https://bio.tools/charprotdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0089,
@@ -131431,7 +122320,7 @@ The result of OCR (Open Chromatin Region) assay technologies such as DNase-seq a
     biotools:primaryContact "Ramana Madupu" .
 
 <https://bio.tools/charts> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -131447,8 +122336,43 @@ The result of OCR (Open Chromatin Region) assay technologies such as DNase-seq a
     sc:name "CHARTS" ;
     sc:url "http://charts.morgridge.org" .
 
+<https://bio.tools/chaste> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:applicationSubCategory edam:topic_0602,
+        edam:topic_3316 ;
+    sc:citation <https://doi.org/10.21105/joss.01848> ;
+    sc:description "Chaste (Cooper et al., 2020) is an open-source, general-purpose simulation package for modelling soft tissues and discrete cell populations that can be used with MPI. This tool allows using different modelling frameworks on a given problem, enabling users to select the most appropriate one for their research and to better understand the limitations of each one of them. Chaste has been used for a wide range of projects, such as intestinal (Dunn et al., 2013) or colonic crypt (Dunn et al., 2012) studies." ;
+    sc:isAccessibleForFree true ;
+    sc:license "BSD-3-Clause" ;
+    sc:name "Chaste" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <http://www.cs.ox.ac.uk/chaste/documentation.html> ;
+    sc:softwareVersion "2021.1" ;
+    sc:url "http://www.cs.ox.ac.uk/chaste/" .
+
+<https://bio.tools/chaste_codegen> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0108,
+        edam:topic_3300,
+        edam:topic_3315 ;
+    sc:citation <https://doi.org/10.12688/WELLCOMEOPENRES.17206.1> ;
+    sc:description "The chaste_codegen module takes CellML models as input, via cellmlmanip to read and manipulate them, then uses templating to generate C++ code." ;
+    sc:featureList edam:operation_2426,
+        edam:operation_3435 ;
+    sc:isAccessibleForFree true ;
+    sc:license "BSD-3-Clause" ;
+    sc:name "chaste_codegen" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://chaste-codegen.readthedocs.io/en/latest/> ;
+    sc:url "https://pypi.org/project/chaste-codegen/" .
+
 <https://bio.tools/chat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0218,
         edam:topic_2640,
@@ -131468,7 +122392,7 @@ The result of OCR (Open Chromatin Region) assay technologies such as DNase-seq a
     biotools:primaryContact "Simon Baker" .
 
 <https://bio.tools/chc_find> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0082,
@@ -131484,8 +122408,41 @@ The result of OCR (Open Chromatin Region) assay technologies such as DNase-seq a
     sc:name "CHC_FIND" ;
     sc:url "http://schubert.bio.uniroma1.it/CHC_FIND/index.html" .
 
+<https://bio.tools/chdbase> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1026" ;
+            sc:name "Gene symbol" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1904" ;
+            sc:name "Locus ID (EntrezGene)" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1033" ;
+            sc:name "Ensembl gene ID" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1106" ;
+            sc:name "dbSNP ID" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_0602,
+        edam:topic_0625,
+        edam:topic_0634,
+        edam:topic_3335 ;
+    sc:citation <https://doi.org/10.1016/j.gpb.2022.08.001>,
+        "pubmed:35961607" ;
+    sc:description "A Comprehensive Knowledgebase for Congenital Heart Disease-related Genes and Clinical Manifestations." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_1812,
+        edam:operation_2422 ;
+    sc:isAccessibleForFree true ;
+    sc:name "CHDbase" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://chddb.fwgenetics.org/" .
+
 <https://bio.tools/chdgkb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0203,
@@ -131504,14 +122461,13 @@ The result of OCR (Open Chromatin Region) assay technologies such as DNase-seq a
 
 <https://bio.tools/chebi> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1174" ;
-            sc:name "ChEBI ID" ;
-            sc:sameAs "http://edamontology.org/data_1174" ] ;
+            sc:additionalType "http://edamontology.org/data_1174" ;
+            sc:name "ChEBI ID" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0962" ;
-            sc:name "Small molecule report" ;
-            sc:sameAs "http://edamontology.org/data_0962" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0962" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Small molecule report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3369 ;
@@ -131530,14 +122486,13 @@ The result of OCR (Open Chromatin Region) assay technologies such as DNase-seq a
 
 <https://bio.tools/chebi_ws> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1174" ;
-            sc:name "ChEBI ID" ;
-            sc:sameAs "http://edamontology.org/data_1174" ] ;
+            sc:additionalType "http://edamontology.org/data_1174" ;
+            sc:name "ChEBI ID" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0962" ;
-            sc:name "Small molecule report" ;
-            sc:sameAs "http://edamontology.org/data_0962" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0962" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Small molecule report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0154,
@@ -131555,7 +122510,7 @@ The result of OCR (Open Chromatin Region) assay technologies such as DNase-seq a
     sc:url "http://www.ebi.ac.uk/chebi/webServices.do" .
 
 <https://bio.tools/checkcif> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2828 ;
@@ -131570,7 +122525,7 @@ The result of OCR (Open Chromatin Region) assay technologies such as DNase-seq a
     sc:url "https://checkcif.iucr.org" .
 
 <https://bio.tools/checker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3297 ;
     sc:description "A Microsoft Windows-based software application for checking biotechnology Sequence Listings for compliance with 37 Code of Federal Regulations (CFR) 1.821 – 1.825 for both ‘old rules’ (October 1990) and ‘new rules’ (July 1998)." ;
@@ -131582,7 +122537,7 @@ The result of OCR (Open Chromatin Region) assay technologies such as DNase-seq a
     sc:url "http://www.uspto.gov/patents-getting-started/patent-basics/types-patent-applications/utility-patent/checker-version-446" .
 
 <https://bio.tools/checkm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0194,
         edam:topic_0622,
         edam:topic_0637,
@@ -131598,7 +122553,7 @@ The result of OCR (Open Chromatin Region) assay technologies such as DNase-seq a
     sc:url "https://ecogenomics.github.io/CheckM" .
 
 <https://bio.tools/checkmyblob> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0209,
@@ -131617,7 +122572,7 @@ The result of OCR (Open Chromatin Region) assay technologies such as DNase-seq a
         <https://orcid.org/0000-0001-9723-525X> .
 
 <https://bio.tools/checkmyindex> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_3071 ;
@@ -131635,8 +122590,29 @@ The result of OCR (Open Chromatin Region) assay technologies such as DNase-seq a
     sc:url "https://checkmyindex.pasteur.fr" ;
     biotools:primaryContact "Hugo Varet" .
 
+<https://bio.tools/checkmysequence> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_3382,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1107/S2059798322005009>,
+        "pmcid:PMC9248842",
+        "pubmed:35775980" ;
+    sc:description "CheckMySequence is a Python package for the automated detection of register-shift errors in cryo-EM models." ;
+    sc:featureList edam:operation_0479,
+        edam:operation_2428,
+        edam:operation_3460 ;
+    sc:isAccessibleForFree true ;
+    sc:license "BSD-3-Clause" ;
+    sc:name "checkMySequence" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://gitlab.com/gchojnowski/checkmysequence" .
+
 <https://bio.tools/checksumstats> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0769,
@@ -131658,22 +122634,18 @@ The result of OCR (Open Chromatin Region) assay technologies such as DNase-seq a
 
 <https://bio.tools/checktrans> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2886" ;
-            sc:name "Protein sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2886" ] ;
+            sc:additionalType "http://edamontology.org/data_2886" ;
+            sc:name "Protein sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1276" ;
-            sc:name "Nucleic acid features" ;
-            sc:sameAs "http://edamontology.org/data_1276" ],
+            sc:additionalType "http://edamontology.org/data_1276" ;
+            sc:name "Nucleic acid features" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ],
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:name "Protein features" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0623 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -131703,7 +122675,7 @@ The result of OCR (Open Chromatin Region) assay technologies such as DNase-seq a
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/checktrans.html" .
 
 <https://bio.tools/checkv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
@@ -131718,7 +122690,7 @@ The result of OCR (Open Chromatin Region) assay technologies such as DNase-seq a
     sc:url "http://bitbucket.org/berkeleylab/CheckV" .
 
 <https://bio.tools/cheer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0637,
@@ -131733,7 +122705,7 @@ The result of OCR (Open Chromatin Region) assay technologies such as DNase-seq a
     sc:url "https://github.com/KennthShang/CHEER" .
 
 <https://bio.tools/cheetah> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2229,
@@ -131750,7 +122722,7 @@ The result of OCR (Open Chromatin Region) assay technologies such as DNase-seq a
     sc:url "https://www.github.com/BiocomputeLab/cheetah" .
 
 <https://bio.tools/cheetah-ms> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_2275,
@@ -131769,7 +122741,7 @@ The result of OCR (Open Chromatin Region) assay technologies such as DNase-seq a
     sc:url "https://www.txms.org" .
 
 <https://bio.tools/chem4word> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3314 ;
@@ -131782,7 +122754,7 @@ The result of OCR (Open Chromatin Region) assay technologies such as DNase-seq a
     sc:url "http://chem4word.codeplex.com/" .
 
 <https://bio.tools/chemalot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_2258,
@@ -131800,7 +122772,7 @@ The result of OCR (Open Chromatin Region) assay technologies such as DNase-seq a
     biotools:primaryContact "Man-ling Lee" .
 
 <https://bio.tools/chembench> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Bioinformatics portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0209,
@@ -131820,7 +122792,7 @@ The result of OCR (Open Chromatin Region) assay technologies such as DNase-seq a
     sc:url "https://chembench.mml.unc.edu/" .
 
 <https://bio.tools/chembioserver> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0154,
@@ -131839,14 +122811,13 @@ The result of OCR (Open Chromatin Region) assay technologies such as DNase-seq a
 
 <https://bio.tools/chembl> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2646" ;
-            sc:name "Compound ID (ChEMBL)" ;
-            sc:sameAs "http://edamontology.org/data_2646" ] ;
+            sc:additionalType "http://edamontology.org/data_2646" ;
+            sc:name "Compound ID (ChEMBL)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0962" ;
-            sc:name "Small molecule report" ;
-            sc:sameAs "http://edamontology.org/data_0962" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0962" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Small molecule report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web API" ;
     sc:applicationSubCategory edam:topic_0154,
@@ -131870,14 +122841,13 @@ The result of OCR (Open Chromatin Region) assay technologies such as DNase-seq a
 
 <https://bio.tools/chembl_biologicals_blast_search> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0962" ;
-            sc:name "Small molecule report" ;
-            sc:sameAs "http://edamontology.org/data_0962" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0962" ;
+            sc:name "Small molecule report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0154 ;
@@ -131898,14 +122868,13 @@ The result of OCR (Open Chromatin Region) assay technologies such as DNase-seq a
 
 <https://bio.tools/chembl_blast_search> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0962" ;
-            sc:name "Small molecule report" ;
-            sc:sameAs "http://edamontology.org/data_0962" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0962" ;
+            sc:name "Small molecule report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0154,
@@ -131927,14 +122896,12 @@ The result of OCR (Open Chromatin Region) assay technologies such as DNase-seq a
 
 <https://bio.tools/chembl_ntd_small_molecule_search> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3490" ;
-            sc:name "Chemical structure sketch" ;
-            sc:sameAs "http://edamontology.org/data_3490" ] ;
+            sc:additionalType "http://edamontology.org/data_3490" ;
+            sc:name "Chemical structure sketch" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0962" ;
-            sc:name "Small molecule report" ;
-            sc:sameAs "http://edamontology.org/data_0962" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0962" ;
+            sc:name "Small molecule report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3324 ;
@@ -131955,14 +122922,12 @@ The result of OCR (Open Chromatin Region) assay technologies such as DNase-seq a
 
 <https://bio.tools/chembl_small_molecule_search> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3490" ;
-            sc:name "Chemical structure sketch" ;
-            sc:sameAs "http://edamontology.org/data_3490" ] ;
+            sc:additionalType "http://edamontology.org/data_3490" ;
+            sc:name "Chemical structure sketch" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0962" ;
-            sc:name "Small molecule report" ;
-            sc:sameAs "http://edamontology.org/data_0962" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0962" ;
+            sc:name "Small molecule report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2258 ;
@@ -131981,8 +122946,19 @@ The result of OCR (Open Chromatin Region) assay technologies such as DNase-seq a
     sc:url "https://www.ebi.ac.uk/chembl/compound" ;
     biotools:primaryContact "Mark Davies" .
 
+<https://bio.tools/chemchain> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:citation <https://doi.org/10.1186/1752-0509-3-58> ;
+    sc:description "ChemChains is a logical network simulation and analysis suite." ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-2.0" ;
+    sc:name "Chemchain" ;
+    sc:softwareHelp <http://www.bioinformatics.org/chemchains/wiki/doc/> ;
+    sc:softwareVersion "1.20" ;
+    sc:url "https://www.bioinformatics.org/chemchains/wiki/" .
+
 <https://bio.tools/chemchains> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2259 ;
@@ -131997,8 +122973,32 @@ The result of OCR (Open Chromatin Region) assay technologies such as DNase-seq a
     sc:softwareVersion "1.22" ;
     sc:url "http://www.bioinformatics.org/chemchains/wiki/" .
 
+<https://bio.tools/chemchaste> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0821,
+        edam:topic_3172,
+        edam:topic_3292,
+        edam:topic_3407,
+        edam:topic_3955 ;
+    sc:citation <https://doi.org/10.1101/2021.10.21.465304> ;
+    sc:description """Simulating spatially inhomogenous biochemical reaction-diffusion systems for modelling cell-environment feedbacks.
+
+Instructions for installation and explanation of the ChemChaste package may be found in ChemChaste_Documentation.pdf.""" ;
+    sc:featureList edam:operation_0334,
+        edam:operation_2426,
+        edam:operation_3660 ;
+    sc:isAccessibleForFree true ;
+    sc:license "BSD-3-Clause" ;
+    sc:name "ChemChaste" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://github.com/OSS-Lab/ChemChaste/blob/main/ChemChaste_Documentation.pdf> ;
+    sc:url "https://github.com/OSS-Lab/ChemChaste" .
+
 <https://bio.tools/chemdis-mixture> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0202,
@@ -132015,7 +123015,7 @@ The result of OCR (Open Chromatin Region) assay technologies such as DNase-seq a
     biotools:primaryContact "Chun-Wei Tung" .
 
 <https://bio.tools/chemdistiller> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3172,
@@ -132035,7 +123035,7 @@ The result of OCR (Open Chromatin Region) assay technologies such as DNase-seq a
     biotools:primaryContact "Kirill A Veselkov" .
 
 <https://bio.tools/chemdraw_ultra> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0154 ;
     sc:description "Used for drawing accurate, chemically-aware structures for use in database queries, preparation of publication-quality graphics, and entry for modeling and other programs that require an electronic description of molecules and reactions." ;
@@ -132046,7 +123046,7 @@ The result of OCR (Open Chromatin Region) assay technologies such as DNase-seq a
     sc:url "http://www.cambridgesoft.com/software/overview.aspx" .
 
 <https://bio.tools/chemfate> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_0621,
@@ -132062,7 +123062,7 @@ The result of OCR (Open Chromatin Region) assay technologies such as DNase-seq a
     sc:url "https://github.com/klaris-ak/ChemFate" .
 
 <https://bio.tools/chemfluc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3047,
@@ -132078,7 +123078,7 @@ The result of OCR (Open Chromatin Region) assay technologies such as DNase-seq a
     sc:url "http://admet.scbdd.com/chemfluc/index/" .
 
 <https://bio.tools/chemfluo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3047,
         edam:topic_3336,
         edam:topic_3369,
@@ -132094,7 +123094,7 @@ The result of OCR (Open Chromatin Region) assay technologies such as DNase-seq a
     sc:url "http://admet.scbdd.com/chemfluo/index/" .
 
 <https://bio.tools/chemfp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_2258,
         edam:topic_3068,
@@ -132113,25 +123113,8 @@ There are two ways to try out chemfp. From the download page page you can reques
     sc:name "chemfp" ;
     sc:url "http://www.chemfp.com/" .
 
-<https://bio.tools/chemfp_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0749,
-        edam:topic_2258,
-        edam:topic_3314 ;
-    sc:citation <https://doi.org/10.1186/S13321-019-0398-8>,
-        "pmcid:PMC6896769" ;
-    sc:description """Fast cheminformatics fingerprint search, at your fingertips.
-
-Chemfp is a set of command-line tools and a Python library for fingerprint generation and high-performance similarity search.
-
-There are two ways to try out chemfp. From the download page page you can request an evaluation copy of the most recent version of chemfp, or you can download an earlier version for no cost under the MIT license""" ;
-    sc:featureList edam:operation_0335,
-        edam:operation_2421,
-        edam:operation_3802 ;
-    sc:name "chemfp_autogenerated" ;
-    sc:url "http://www.chemfp.com/" .
-
 <https://bio.tools/chemgenerator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2275,
@@ -132147,14 +123130,12 @@ There are two ways to try out chemfp. From the download page page you can reques
 
 <https://bio.tools/chemgps-np> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2087" ;
-            sc:name "Molecular property" ;
-            sc:sameAs "http://edamontology.org/data_2087" ] ;
+            sc:additionalType "http://edamontology.org/data_2087" ;
+            sc:name "Molecular property" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2087" ;
-            sc:name "Molecular property" ;
-            sc:sameAs "http://edamontology.org/data_2087" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2087" ;
+            sc:name "Molecular property" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API",
         "Web application",
         "Web service" ;
@@ -132173,10 +123154,9 @@ There are two ways to try out chemfp. From the download page page you can reques
 
 <https://bio.tools/chemhits> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2050" ;
-            sc:name "Molecular property (general)" ;
-            sc:sameAs "http://edamontology.org/data_2050" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2050" ;
+            sc:name "Molecular property (general)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3314 ;
     sc:citation <https://doi.org/10.1038/npre.2009.3322.1> ;
@@ -132192,7 +123172,7 @@ There are two ways to try out chemfp. From the download page page you can reques
     sc:url "http://sabio.h-its.org/chemHits/" .
 
 <https://bio.tools/chemhub> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3047,
@@ -132206,7 +123186,7 @@ There are two ways to try out chemfp. From the download page page you can reques
     sc:url "http://www.rxnfinder.org/chemhub/" .
 
 <https://bio.tools/chemical_checker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:citation <https://doi.org/10.1038/s41587-020-0564-6>,
         "pubmed:32440008" ;
     sc:description "The Chemical Checker (CC) is a resource that provides processed, harmonized and integrated bioactivity data on 800,000 small molecules. The CC divides data into five levels of increasing complexity, ranging from the chemical properties of compounds to their clinical outcomes. In between, it considers targets, off-targets, perturbed biological networks and several cell-based assays such as gene expression, growth inhibition and morphological profilings. In the CC, bioactivity data are expressed in a vector format, which naturally extends the notion of chemical similarity between compounds to similarities between bioactivity signatures of different kinds." ;
@@ -132214,7 +123194,7 @@ There are two ways to try out chemfp. From the download page page you can reques
     sc:url "https://chemicalchecker.org" .
 
 <https://bio.tools/chemical_identifier_resolver> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API" ;
     sc:applicationSubCategory edam:topic_2258,
         edam:topic_3071 ;
@@ -132229,7 +123209,7 @@ There are two ways to try out chemfp. From the download page page you can reques
     sc:url "http://cactus.nci.nih.gov/chemical/structure/documentation" .
 
 <https://bio.tools/chemicaltoolbox> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Workbench",
         "Workflow" ;
@@ -132248,7 +123228,7 @@ There are two ways to try out chemfp. From the download page page you can reques
     sc:url "https://cheminformatics.usegalaxy.eu/" .
 
 <https://bio.tools/chemmaps> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_3077,
@@ -132267,7 +123247,7 @@ There are two ways to try out chemfp. From the download page page you can reques
     biotools:primaryContact "Contact form" .
 
 <https://bio.tools/chemmine_tools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0154,
@@ -132289,22 +123269,22 @@ There are two ways to try out chemfp. From the download page page you can reques
 
 <https://bio.tools/chemmineob> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2050" ;
-            sc:name "Molecular property (general)" ;
-            sc:sameAs "http://edamontology.org/data_2050" ],
+            sc:additionalType "http://edamontology.org/data_2050" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Molecular property (general)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1463" ;
-            sc:name "Small molecule structure" ;
-            sc:sameAs "http://edamontology.org/data_1463" ] ;
+            sc:additionalType "http://edamontology.org/data_1463" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Small molecule structure" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1463" ;
-            sc:name "Small molecule structure" ;
-            sc:sameAs "http://edamontology.org/data_1463" ],
+            sc:additionalType "http://edamontology.org/data_2050" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Molecular property (general)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2050" ;
-            sc:name "Molecular property (general)" ;
-            sc:sameAs "http://edamontology.org/data_2050" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1463" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Small molecule structure" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2258 ;
@@ -132326,22 +123306,22 @@ There are two ways to try out chemfp. From the download page page you can reques
 
 <https://bio.tools/chemminer> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2050" ;
-            sc:name "Molecular property (general)" ;
-            sc:sameAs "http://edamontology.org/data_2050" ],
+            sc:additionalType "http://edamontology.org/data_1463" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Small molecule structure" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1463" ;
-            sc:name "Small molecule structure" ;
-            sc:sameAs "http://edamontology.org/data_1463" ] ;
+            sc:additionalType "http://edamontology.org/data_2050" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Molecular property (general)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1463" ;
-            sc:name "Small molecule structure" ;
-            sc:sameAs "http://edamontology.org/data_1463" ],
+            sc:additionalType "http://edamontology.org/data_1463" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Small molecule structure" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2050" ;
-            sc:name "Molecular property (general)" ;
-            sc:sameAs "http://edamontology.org/data_2050" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2050" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Molecular property (general)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2258 ;
@@ -132369,8 +123349,23 @@ There are two ways to try out chemfp. From the download page page you can reques
     sc:url "http://bioconductor.org/packages/release/bioc/html/ChemmineR.html" ;
     biotools:primaryContact "Thomas Girke" .
 
+<https://bio.tools/chemopred> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:citation <https://doi.org/10.1093/protein/gzp016>,
+        "pubmed:19491216" ;
+    sc:description "A server to predict chemokines and their receptors." ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "chemopred" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/chemopred/index.html> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/chemopred/index.html" .
+
 <https://bio.tools/chemos> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_3314,
         edam:topic_3474,
@@ -132385,7 +123380,7 @@ There are two ways to try out chemfp. From the download page page you can reques
     sc:url "https://github.com/aspuru-guzik-group/ChemOS" .
 
 <https://bio.tools/chemotion> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0219,
         edam:topic_0769,
@@ -132399,7 +123394,7 @@ There are two ways to try out chemfp. From the download page page you can reques
     sc:url "http://chemotion-repository.net/home/welcome" .
 
 <https://bio.tools/chemotion_eln> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_2258,
@@ -132418,7 +123413,7 @@ There are two ways to try out chemfp. From the download page page you can reques
     biotools:primaryContact "Stefan Bräse" .
 
 <https://bio.tools/chempix> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3047,
         edam:topic_3314,
@@ -132436,7 +123431,7 @@ There are two ways to try out chemfp. From the download page page you can reques
     sc:url "https://github.com/mtzgroup/ChemPixCH" .
 
 <https://bio.tools/chemprops> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web API" ;
     sc:applicationSubCategory edam:topic_0108,
@@ -132453,14 +123448,14 @@ There are two ways to try out chemfp. From the download page page you can reques
 
 <https://bio.tools/chemprot> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0990" ;
-            sc:name "Compound name" ;
-            sc:sameAs "http://edamontology.org/data_0990" ] ;
+            sc:additionalType "http://edamontology.org/data_0990" ;
+            sc:encodingFormat "http://edamontology.org/format_1196" ;
+            sc:name "Compound name" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0906" ;
-            sc:name "Protein interaction data" ;
-            sc:sameAs "http://edamontology.org/data_0906" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0906" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Protein interaction data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0602 ;
@@ -132482,7 +123477,7 @@ There are two ways to try out chemfp. From the download page page you can reques
     sc:url "http://cbs.dtu.dk/services/ChemProt-2.0/" .
 
 <https://bio.tools/chemsar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2258,
@@ -132499,7 +123494,7 @@ There are two ways to try out chemfp. From the download page page you can reques
     biotools:primaryContact "Dongsheng Cao" .
 
 <https://bio.tools/chemscanner> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2258,
@@ -132517,7 +123512,7 @@ There are two ways to try out chemfp. From the download page page you can reques
     sc:url "https://github.com/complat/chem_scanner" .
 
 <https://bio.tools/chemschematicresolver> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
@@ -132535,7 +123530,7 @@ There are two ways to try out chemfp. From the download page page you can reques
     sc:url "http://www.chemschematicresolver.org" .
 
 <https://bio.tools/chemspectra> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0593,
@@ -132552,7 +123547,7 @@ There are two ways to try out chemfp. From the download page page you can reques
     sc:url "https://eln.chemotion.net/chemspectra-editor" .
 
 <https://bio.tools/chemspider> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_2258,
         edam:topic_3071 ;
@@ -132568,7 +123563,7 @@ There are two ways to try out chemfp. From the download page page you can reques
     sc:url "http://www.chemspider.com/" .
 
 <https://bio.tools/chemspotlight> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_3314 ;
     sc:description "ChemSpotlight is a Spotlight metadata importer plugin for Mac OS X, which reads common chemical file formats using the Open Babel chemistry library. Spotlight can then index and search chemical data: molecular weights, formulas, SMILES, InChI, fingerprints, etc." ;
@@ -132580,7 +123575,7 @@ There are two ways to try out chemfp. From the download page page you can reques
     sc:url "http://chemspotlight.openmolecules.net/" .
 
 <https://bio.tools/chemstor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3314,
@@ -132592,7 +123587,7 @@ There are two ways to try out chemfp. From the download page page you can reques
     sc:url "https://github.com/lilott8/BioScript" .
 
 <https://bio.tools/chemt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2275 ;
     sc:citation <https://doi.org/10.1080/1062936X.2011.604097> ;
@@ -132604,7 +123599,7 @@ There are two ways to try out chemfp. From the download page page you can reques
     sc:url "http://www.esa.ipb.pt/biochemcore/index.php/ds/c" .
 
 <https://bio.tools/chemtables> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0202,
         edam:topic_0218,
@@ -132619,8 +123614,31 @@ There are two ways to try out chemfp. From the download page page you can reques
     sc:url "https://github.com/zenanz/ChemTables" ;
     biotools:primaryContact <https://orcid.org/0000-0002-8661-1544> .
 
+<https://bio.tools/chemtastesdb> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0219,
+        edam:topic_2258,
+        edam:topic_3067,
+        edam:topic_3292 ;
+    sc:citation <https://doi.org/10.1016/J.FOCHMS.2022.100090>,
+        "pmcid:PMC8991844",
+        "pubmed:35415670" ;
+    sc:description "A curated database of molecular tastants." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_2422,
+        edam:operation_3891 ;
+    sc:isAccessibleForFree true ;
+    sc:license "CC-BY-4.0" ;
+    sc:name "ChemTastesDB" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://doi.org/10.5281/zenodo.5747393" .
+
 <https://bio.tools/chemtb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0209,
         edam:topic_3047,
@@ -132640,7 +123658,7 @@ There are two ways to try out chemfp. From the download page page you can reques
         "Dan Li" .
 
 <https://bio.tools/chemvox> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_3314,
         edam:topic_3474 ;
@@ -132650,7 +123668,7 @@ There are two ways to try out chemfp. From the download page page you can reques
     sc:url "https://bitbucket.org/mtzcloud/chemvox_tutorial/src/master" .
 
 <https://bio.tools/chesca-chespa-sparky> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0593,
@@ -132664,7 +123682,7 @@ There are two ways to try out chemfp. From the download page page you can reques
     sc:url "https://sites.google.com/view/chescachespa-sparky" .
 
 <https://bio.tools/chespi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0154,
         edam:topic_0593,
@@ -132680,7 +123698,7 @@ There are two ways to try out chemfp. From the download page page you can reques
     sc:url "https://st-protein.chem.au.dk/chespi" .
 
 <https://bio.tools/chewie-ns> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0622,
         edam:topic_3382,
@@ -132698,7 +123716,7 @@ There are two ways to try out chemfp. From the download page page you can reques
     sc:url "https://github.com/B-UMMI/Chewie-NS" .
 
 <https://bio.tools/chfinder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_3293,
@@ -132713,7 +123731,7 @@ There are two ways to try out chemfp. From the download page page you can reques
     sc:url "https://github.com/compimmuno/CHfinder" .
 
 <https://bio.tools/chg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0602,
@@ -132731,7 +123749,7 @@ There are two ways to try out chemfp. From the download page page you can reques
     sc:url "http://www.bio-bigdata.com/CHG/index.html" .
 
 <https://bio.tools/chia-pet2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3168,
         edam:topic_3169,
@@ -132752,7 +123770,7 @@ There are two ways to try out chemfp. From the download page page you can reques
     biotools:primaryContact "Guipeng Li" .
 
 <https://bio.tools/chia-pipe> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0769,
@@ -132771,7 +123789,7 @@ There are two ways to try out chemfp. From the download page page you can reques
     sc:url "https://github.com/TheJacksonLaboratory/ChIA-PIPE" .
 
 <https://bio.tools/chic> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3169,
         edam:topic_3393 ;
@@ -132789,7 +123807,7 @@ There are two ways to try out chemfp. From the download page page you can reques
     biotools:primaryContact "Carmen Maria Livi" .
 
 <https://bio.tools/chicag> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0602,
@@ -132806,7 +123824,7 @@ There are two ways to try out chemfp. From the download page page you can reques
     biotools:primaryContact "Mikhail Spivakov" .
 
 <https://bio.tools/chicago> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0622 ;
@@ -132826,7 +123844,7 @@ There are two ways to try out chemfp. From the download page page you can reques
     biotools:primaryContact <http://orcid.org/0000-0002-0383-3943> .
 
 <https://bio.tools/chicane> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Suite" ;
     sc:applicationSubCategory edam:topic_0204,
@@ -132847,7 +123865,7 @@ There are two ways to try out chemfp. From the download page page you can reques
     sc:url "https://cran.r-project.org/web/packages/chicane" .
 
 <https://bio.tools/chilibot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0218,
@@ -132867,7 +123885,7 @@ There are two ways to try out chemfp. From the download page page you can reques
     biotools:primaryContact "Hao Chen" .
 
 <https://bio.tools/chilin> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3169,
@@ -132887,11 +123905,25 @@ There are two ways to try out chemfp. From the download page page you can reques
     biotools:primaryContact "Support" .
 
 <https://bio.tools/chimera> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0611,
-        edam:topic_1317 ;
-    sc:citation <https://doi.org/10.1002/jcc.20084> ;
+        edam:topic_1317,
+        edam:topic_2275 ;
+    sc:citation <https://doi.org/10.1002/jcc.20084>,
+        <https://doi.org/10.1016/j.jsb.2006.06.010>,
+        <https://doi.org/10.1016/j.str.2005.01.006>,
+        <https://doi.org/10.1093/nar/gku377>,
+        <https://doi.org/10.1093/nar/gnj031>,
+        <https://doi.org/10.1186/1471-2105-7-339>,
+        "pmcid:PMC1368656",
+        "pmcid:PMC4086125",
+        "pubmed:15264254",
+        "pubmed:15766548",
+        "pubmed:16478715",
+        "pubmed:16836757",
+        "pubmed:16963278",
+        "pubmed:24861624" ;
     sc:description "Highly extensible program for interactive visualization and analysis of molecular structures and related data, including density maps, supramolecular assemblies, sequence alignments, docking results, trajectories, and conformational ensembles. High-quality images and animations can be generated." ;
     sc:featureList edam:operation_0570,
         edam:operation_2480 ;
@@ -132906,7 +123938,7 @@ There are two ways to try out chemfp. From the download page page you can reques
     sc:url "http://www.cgl.ucsf.edu/chimera/" .
 
 <https://bio.tools/chimera-visualizer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0130,
         edam:topic_3382,
         edam:topic_3474 ;
@@ -132921,7 +123953,7 @@ There are two ways to try out chemfp. From the download page page you can reques
     sc:url "https://github.com/lin-chen-VA/chimeraplugin" .
 
 <https://bio.tools/chimera_fusion> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0114 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btu662> ;
@@ -132941,7 +123973,7 @@ There are two ways to try out chemfp. From the download page page you can reques
     biotools:primaryContact "Raffaele A Calogero" .
 
 <https://bio.tools/chimerascan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3170,
@@ -132960,7 +123992,7 @@ There are two ways to try out chemfp. From the download page page you can reques
     biotools:primaryContact "Christopher A. Maher" .
 
 <https://bio.tools/chimeraslayer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654 ;
@@ -132976,7 +124008,7 @@ There are two ways to try out chemfp. From the download page page you can reques
     sc:url "http://microbiomeutil.sourceforge.net/#A_CS" .
 
 <https://bio.tools/chimeraviz> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_3053,
@@ -132996,14 +124028,16 @@ There are two ways to try out chemfp. From the download page page you can reques
     biotools:primaryContact "Rolf I. Skotheim" .
 
 <https://bio.tools/chimerax> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0605,
         edam:topic_2275,
         edam:topic_3382,
         edam:topic_3794 ;
     sc:citation <https://doi.org/10.1002/PRO.3943>,
+        <https://doi.org/10.1002/pro.3235>,
         "pmcid:PMC7737788",
+        "pubmed:28710774",
         "pubmed:32881101" ;
     sc:description """Structure visualization for researchers, educators, and developers.
 
@@ -133020,7 +124054,7 @@ UCSF ChimeraX is the next-generation molecular visualization program from the Re
     sc:url "https://www.rbvi.ucsf.edu/chimerax" .
 
 <https://bio.tools/chimerdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0114,
         edam:topic_0203,
@@ -133045,8 +124079,28 @@ UCSF ChimeraX is the next-generation molecular visualization program from the Re
     biotools:primaryContact "J. Kang",
         "S. Lee" .
 
+<https://bio.tools/chimerdriver> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0089,
+        edam:topic_0659,
+        edam:topic_0749,
+        edam:topic_3474,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.1016/J.JBI.2022.104057>,
+        "pubmed:35339665" ;
+    sc:description "Identifying the oncogenic potential of gene fusions exploiting miRNAs" ;
+    sc:featureList edam:operation_0463 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "ChimerDriver" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/martalovino/ChimerDriver" .
+
 <https://bio.tools/chinn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3169,
@@ -133067,7 +124121,7 @@ UCSF ChimeraX is the next-generation molecular visualization program from the Re
     sc:url "https://github.com/mjflab/chinn" .
 
 <https://bio.tools/chinook> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0091,
@@ -133088,7 +124142,7 @@ UCSF ChimeraX is the next-generation molecular visualization program from the Re
     biotools:primaryContact "Stephen B Montgomery" .
 
 <https://bio.tools/chip-ap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application",
         "Workflow" ;
@@ -133109,7 +124163,7 @@ UCSF ChimeraX is the next-generation molecular visualization program from the Re
         "Daniel G. Tenen" .
 
 <https://bio.tools/chip-array> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0204,
@@ -133131,8 +124185,32 @@ UCSF ChimeraX is the next-generation molecular visualization program from the Re
     sc:url "http://jjwanglab.org/chip-array/" ;
     biotools:primaryContact "Junwen Wang" .
 
+<https://bio.tools/chip-atlas> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Suite",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0621,
+        edam:topic_2885,
+        edam:topic_3169,
+        edam:topic_3173,
+        edam:topic_3940 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAC199>,
+        "pubmed:35325188" ;
+    sc:description "ChIP-Atlas is a web service providing both GUI- and API-based data-mining tools to reveal the architecture of the transcription regulatory landscape." ;
+    sc:featureList edam:operation_0224,
+        edam:operation_0525,
+        edam:operation_3208 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "ChIP-Atlas" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://chip-atlas.org" .
+
 <https://bio.tools/chip-bit2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3169,
@@ -133153,7 +124231,7 @@ UCSF ChimeraX is the next-generation molecular visualization program from the Re
     biotools:primaryContact <https://orcid.org/0000-0001-7256-1374> .
 
 <https://bio.tools/chip-gsm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0749,
@@ -133170,8 +124248,32 @@ UCSF ChimeraX is the next-generation molecular visualization program from the Re
     sc:name "ChIP-GSM" ;
     sc:url "https://sourceforge.net/projects/chipgsm/" .
 
+<https://bio.tools/chip-hub> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Desktop application" ;
+    sc:applicationSubCategory edam:topic_0749,
+        edam:topic_0780,
+        edam:topic_3169,
+        edam:topic_3173,
+        edam:topic_3179 ;
+    sc:citation <https://doi.org/10.1038/S41467-022-30770-1>,
+        "pmcid:PMC9197862",
+        "pubmed:35701419" ;
+    sc:description "ChIP-Hub is an integrative web-based/Shiny application for exploring plant regulome." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_0438,
+        edam:operation_2942,
+        edam:operation_3211,
+        edam:operation_3222 ;
+    sc:license "Not licensed" ;
+    sc:name "ChIP-Hub" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://biobigdata.nju.edu.cn/ChIPHub/" .
+
 <https://bio.tools/chip-rna-seqpro> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_3168,
@@ -133186,7 +124288,7 @@ UCSF ChimeraX is the next-generation molecular visualization program from the Re
     sc:url "http://bioinformaticstools.mayo.edu/research/chip-rna-seqpro/" .
 
 <https://bio.tools/chip-seq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_3169 ;
     sc:citation <https://doi.org/10.1186/s12864-016-3288-8> ;
@@ -133203,7 +124305,7 @@ UCSF ChimeraX is the next-generation molecular visualization program from the Re
     biotools:primaryContact "Contact form" .
 
 <https://bio.tools/chip-seq-analysis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0749,
         edam:topic_3169 ;
@@ -133218,7 +124320,7 @@ UCSF ChimeraX is the next-generation molecular visualization program from the Re
     sc:url "https://ict.biouml.org/bioumlweb/chipseq_analysis.html" .
 
 <https://bio.tools/chipanalyser> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3168,
@@ -133242,7 +124344,7 @@ UCSF ChimeraX is the next-generation molecular visualization program from the Re
     biotools:primaryContact "Patrick C.N. Martin" .
 
 <https://bio.tools/chipchipnorm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3179,
         edam:topic_3656 ;
@@ -133257,7 +124359,7 @@ UCSF ChimeraX is the next-generation molecular visualization program from the Re
     sc:url "http://compbio.med.harvard.edu/software.html" .
 
 <https://bio.tools/chipcomp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3169 ;
@@ -133277,7 +124379,7 @@ UCSF ChimeraX is the next-generation molecular visualization program from the Re
     biotools:primaryContact "Li Chen" .
 
 <https://bio.tools/chipd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0621,
@@ -133294,18 +124396,18 @@ UCSF ChimeraX is the next-generation molecular visualization program from the Re
 
 <https://bio.tools/chipenrich> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2012" ;
-            sc:name "Sequence coordinates" ;
-            sc:sameAs "http://edamontology.org/data_2012" ] ;
+            sc:additionalType "http://edamontology.org/data_2012" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Sequence coordinates" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ],
+            sc:additionalType "http://edamontology.org/data_1276" ;
+            sc:encodingFormat "http://edamontology.org/format_3508" ;
+            sc:name "Nucleic acid features" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1276" ;
-            sc:name "Nucleic acid features" ;
-            sc:sameAs "http://edamontology.org/data_1276" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3508" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3169,
@@ -133327,7 +124429,7 @@ UCSF ChimeraX is the next-generation molecular visualization program from the Re
     biotools:primaryContact "Raymond G. Cavalcante" .
 
 <https://bio.tools/chipexoqual> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3168,
@@ -133347,7 +124449,7 @@ UCSF ChimeraX is the next-generation molecular visualization program from the Re
     biotools:primaryContact "Rene Welch" .
 
 <https://bio.tools/chipin> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3169,
@@ -133370,7 +124472,7 @@ UCSF ChimeraX is the next-generation molecular visualization program from the Re
     sc:url "https://github.com/BoevaLab/CHIPIN" .
 
 <https://bio.tools/chipinfo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0203,
@@ -133384,7 +124486,7 @@ UCSF ChimeraX is the next-generation molecular visualization program from the Re
     sc:url "http://genomics.bioen.illinois.edu/chipinfo/" .
 
 <https://bio.tools/chipmeta> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3169,
@@ -133400,7 +124502,7 @@ UCSF ChimeraX is the next-generation molecular visualization program from the Re
         "Zhaohui S. Qin" .
 
 <https://bio.tools/chipmunk> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_3169 ;
@@ -133418,22 +124520,22 @@ UCSF ChimeraX is the next-generation molecular visualization program from the Re
 
 <https://bio.tools/chipmunk_chiphorde> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Image" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3168,
         edam:topic_3169,
@@ -133455,18 +124557,18 @@ UCSF ChimeraX is the next-generation molecular visualization program from the Re
 
 <https://bio.tools/chippeakanno> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2012" ;
-            sc:name "Sequence coordinates" ;
-            sc:sameAs "http://edamontology.org/data_2012" ] ;
+            sc:additionalType "http://edamontology.org/data_2012" ;
+            sc:encodingFormat "http://edamontology.org/format_2078" ;
+            sc:name "Sequence coordinates" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1276" ;
-            sc:name "Nucleic acid features" ;
-            sc:sameAs "http://edamontology.org/data_1276" ],
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Plot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1276" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Nucleic acid features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3169,
@@ -133488,7 +124590,7 @@ UCSF ChimeraX is the next-generation molecular visualization program from the Re
         "Lihua Julie Zhu" .
 
 <https://bio.tools/chipqc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3169 ;
@@ -133510,14 +124612,12 @@ UCSF ChimeraX is the next-generation molecular visualization program from the Re
 
 <https://bio.tools/chips> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2887" ;
-            sc:name "Nucleic acid sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2887" ] ;
+            sc:additionalType "http://edamontology.org/data_2887" ;
+            sc:name "Nucleic acid sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2865" ;
-            sc:name "Codon usage bias" ;
-            sc:sameAs "http://edamontology.org/data_2865" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2865" ;
+            sc:name "Codon usage bias" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -133547,7 +124647,7 @@ UCSF ChimeraX is the next-generation molecular visualization program from the Re
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/chips.html" .
 
 <https://bio.tools/chips-seq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0769,
@@ -133568,18 +124668,18 @@ UCSF ChimeraX is the next-generation molecular visualization program from the Re
 
 <https://bio.tools/chipseeker> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2012" ;
-            sc:name "Sequence coordinates" ;
-            sc:sameAs "http://edamontology.org/data_2012" ] ;
+            sc:additionalType "http://edamontology.org/data_2012" ;
+            sc:encodingFormat "http://edamontology.org/format_2078" ;
+            sc:name "Sequence coordinates" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1276" ;
-            sc:name "Nucleic acid features" ;
-            sc:sameAs "http://edamontology.org/data_1276" ],
+            sc:additionalType "http://edamontology.org/data_1276" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Nucleic acid features" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -133603,7 +124703,7 @@ UCSF ChimeraX is the next-generation molecular visualization program from the Re
     biotools:primaryContact <http://orcid.org/0000-0002-6485-8781> .
 
 <https://bio.tools/chipseg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3068,
@@ -133616,7 +124716,7 @@ UCSF ChimeraX is the next-generation molecular visualization program from the Re
     sc:url "https://github.com/LM-group/ChipSeg" .
 
 <https://bio.tools/chipseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3169 ;
@@ -133634,7 +124734,7 @@ UCSF ChimeraX is the next-generation molecular visualization program from the Re
     biotools:primaryContact "BioConductor Package Maintainer" .
 
 <https://bio.tools/chipseqr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3169,
@@ -133655,7 +124755,7 @@ UCSF ChimeraX is the next-generation molecular visualization program from the Re
     biotools:primaryContact <http://orcid.org/0000-0002-3331-6496> .
 
 <https://bio.tools/chipseqspike> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3168,
@@ -133675,7 +124775,7 @@ UCSF ChimeraX is the next-generation molecular visualization program from the Re
     biotools:primaryContact "Nicolas Descostes" .
 
 <https://bio.tools/chipsim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3169,
@@ -133694,7 +124794,7 @@ UCSF ChimeraX is the next-generation molecular visualization program from the Re
     biotools:primaryContact "Peter Humburg" .
 
 <https://bio.tools/chipskipper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0654 ;
     sc:description "Combine all  tasks required for analysis and quantitation of micro-array data – both DNA or protein arrays. It’s image processing routines may be also applied to automated evaluation and quantiation of microscopic images." ;
@@ -133709,7 +124809,7 @@ UCSF ChimeraX is the next-generation molecular visualization program from the Re
     sc:url "http://angiogenesis.dkfz.de/oncoexpress/software/chipskipper/" .
 
 <https://bio.tools/chipster> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application",
         "Workbench" ;
@@ -133729,7 +124829,7 @@ UCSF ChimeraX is the next-generation molecular visualization program from the Re
     sc:url "http://chipster.csc.fi/" .
 
 <https://bio.tools/chipuana> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_0769,
@@ -133748,7 +124848,7 @@ UCSF ChimeraX is the next-generation molecular visualization program from the Re
     sc:url "https://gitlab.pasteur.fr/hub/chipuana" .
 
 <https://bio.tools/chipwig> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0607,
         edam:topic_3169,
@@ -133766,7 +124866,7 @@ UCSF ChimeraX is the next-generation molecular visualization program from the Re
     biotools:primaryContact "Olgica Milenković" .
 
 <https://bio.tools/chipxpress> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -133786,7 +124886,7 @@ UCSF ChimeraX is the next-generation molecular visualization program from the Re
     biotools:primaryContact "George Wu" .
 
 <https://bio.tools/chira> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0602,
         edam:topic_0659 ;
@@ -133800,7 +124900,7 @@ UCSF ChimeraX is the next-generation molecular visualization program from the Re
     biotools:primaryContact "Pavankumar Videm" .
 
 <https://bio.tools/chiron> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3168,
@@ -133815,8 +124915,28 @@ UCSF ChimeraX is the next-generation molecular visualization program from the Re
     biotools:primaryContact "Haotian Teng",
         "Lachlan J M Coin" .
 
+<https://bio.tools/chirovox> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0637,
+        edam:topic_3050,
+        edam:topic_3071,
+        edam:topic_3810 ;
+    sc:citation <https://doi.org/10.7717/PEERJ.12445>,
+        "pmcid:PMC8761365",
+        "pubmed:35070499" ;
+    sc:description "A public library of bat calls" ;
+    sc:featureList edam:operation_3431 ;
+    sc:isAccessibleForFree true ;
+    sc:name "ChiroVox" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://www.chirovox.org" .
+
 <https://bio.tools/chit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0625,
@@ -133831,8 +124951,28 @@ UCSF ChimeraX is the next-generation molecular visualization program from the Re
     sc:name "CHIT" ;
     sc:url "https://github.com/QiYanPitt/CHIT" .
 
+<https://bio.tools/chitah> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Workflow" ;
+    sc:applicationSubCategory edam:topic_0114,
+        edam:topic_0203,
+        edam:topic_2640,
+        edam:topic_3170 ;
+    sc:citation <https://doi.org/10.1093/NARGAB/LQAB112>,
+        "pmcid:PMC8633610",
+        "pubmed:34859212" ;
+    sc:description "ChiTaH, a fast and accurate method for the discovery of known human chimeras or fusion genes using DNA-Seq or RNA-Seq data generated using NGS technologies" ;
+    sc:featureList edam:operation_0450,
+        edam:operation_3799,
+        edam:operation_3918 ;
+    sc:isAccessibleForFree true ;
+    sc:name "ChiTaH" ;
+    sc:operatingSystem "Windows" ;
+    sc:url "https://github.com/Rajesh-Detroja/ChiTaH" .
+
 <https://bio.tools/chitars> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0621,
@@ -133852,14 +124992,14 @@ UCSF ChimeraX is the next-generation molecular visualization program from the Re
 
 <https://bio.tools/chlorop> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Protein features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_3510 ;
@@ -133881,7 +125021,7 @@ UCSF ChimeraX is the next-generation molecular visualization program from the Re
     sc:url "http://cbs.dtu.dk/services/ChloroP/" .
 
 <https://bio.tools/chloroplot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0122,
         edam:topic_0203,
@@ -133899,14 +125039,14 @@ UCSF ChimeraX is the next-generation molecular visualization program from the Re
     sc:url "https://irscope.shinyapps.io/chloroplot/" .
 
 <https://bio.tools/chm-eval> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "CHM-eval, aka Syndip, is a benchmark dataset for evaluating the accuracy of small variant callers. It is constructed from the PacBio assemblies of two independent CHM cell lines using procedures largely orthogonal to the methodology used for short-read variant calling, which makes it more comprehensive and less biased in comparison to existing benchmark datasets." ;
     sc:name "chm-eval" ;
     sc:softwareVersion "20180222" ;
     sc:url "https://github.com/lh3/CHM-eval" .
 
 <https://bio.tools/chngpt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0781,
         edam:topic_3360,
@@ -133927,7 +125067,7 @@ UCSF ChimeraX is the next-generation molecular visualization program from the Re
     biotools:primaryContact "Youyi Fong" .
 
 <https://bio.tools/chomics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0625,
@@ -133946,7 +125086,7 @@ UCSF ChimeraX is the next-generation molecular visualization program from the Re
     sc:url "http://www.chomics.org" .
 
 <https://bio.tools/chooch> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_1317 ;
     sc:citation <https://doi.org/10.1107/s0021889800014655> ;
@@ -133959,7 +125099,7 @@ UCSF ChimeraX is the next-generation molecular visualization program from the Re
     sc:url "http://www.gwyndafevans.co.uk/chooch.html" .
 
 <https://bio.tools/chop> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0157,
@@ -133981,10 +125121,10 @@ UCSF ChimeraX is the next-generation molecular visualization program from the Re
 
 <https://bio.tools/chopchop> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3497" ;
-            sc:name "DNA sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_3497" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3497" ;
+            sc:encodingFormat "http://edamontology.org/format_2078" ;
+            sc:name "DNA sequence (raw)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Workbench" ;
     sc:applicationSubCategory edam:topic_0080 ;
@@ -134002,7 +125142,7 @@ UCSF ChimeraX is the next-generation molecular visualization program from the Re
     biotools:primaryContact "Tessa Montague" .
 
 <https://bio.tools/chopsticks> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2885 ;
@@ -134020,7 +125160,7 @@ UCSF ChimeraX is the next-generation molecular visualization program from the Re
     biotools:primaryContact "Hin-Tak Leung" .
 
 <https://bio.tools/chopstitch> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3308,
         edam:topic_3320,
@@ -134040,7 +125180,7 @@ UCSF ChimeraX is the next-generation molecular visualization program from the Re
         "Inanc Birol" .
 
 <https://bio.tools/chord> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_3170,
@@ -134055,7 +125195,7 @@ UCSF ChimeraX is the next-generation molecular visualization program from the Re
     sc:url "https://github.com/13308204545/Chord" .
 
 <https://bio.tools/choroidsegmentation> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3300,
@@ -134078,7 +125218,7 @@ UCSF ChimeraX is the next-generation molecular visualization program from the Re
     biotools:primaryContact "javimazzaf" .
 
 <https://bio.tools/chorus2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0621,
@@ -134102,7 +125242,7 @@ UCSF ChimeraX is the next-generation molecular visualization program from the Re
         "Jiming Jiang" .
 
 <https://bio.tools/chpredict> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0128,
@@ -134121,12 +125261,12 @@ UCSF ChimeraX is the next-generation molecular visualization program from the Re
         "Mac",
         "Windows" ;
     sc:softwareHelp <http://crdd.osdd.net/raghava/chpredict/> ;
-    sc:url "http://www.imtech.res.in/raghava/chpredict" ;
+    sc:url "https://webs.iiitd.edu.in/raghava/chpredict" ;
     biotools:primaryContact "Dr. G.P.S. Raghava",
         "Harpreet Kaur" .
 
 <https://bio.tools/chr7> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0634,
@@ -134147,7 +125287,7 @@ UCSF ChimeraX is the next-generation molecular visualization program from the Re
     biotools:primaryContact "Comments or Questions" .
 
 <https://bio.tools/chrnet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_2229,
@@ -134164,7 +125304,7 @@ UCSF ChimeraX is the next-generation molecular visualization program from the Re
     biotools:primaryContact "Pingzhao Hu" .
 
 <https://bio.tools/chrogps> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -134183,7 +125323,7 @@ UCSF ChimeraX is the next-generation molecular visualization program from the Re
     biotools:primaryContact "Oscar Reina" .
 
 <https://bio.tools/chromagnon> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3382,
@@ -134203,7 +125343,7 @@ UCSF ChimeraX is the next-generation molecular visualization program from the Re
     biotools:primaryContact "Atsushi Matsuda" .
 
 <https://bio.tools/chromas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0654 ;
     sc:description "Chromas is a low-cost chromatogram file editor with search, vector sequence detection and multi-format sequence export functions, plus powerful batch processing." ;
@@ -134217,7 +125357,7 @@ UCSF ChimeraX is the next-generation molecular visualization program from the Re
     sc:url "http://technelysium.com.au/?page_id=13" .
 
 <https://bio.tools/chromasig> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3179,
         edam:topic_3656 ;
@@ -134229,14 +125369,14 @@ UCSF ChimeraX is the next-generation molecular visualization program from the Re
 
 <https://bio.tools/chromatin_dynamics> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ] ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:encodingFormat "http://edamontology.org/format_1212" ;
+            sc:name "Nucleic acid sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_2033" ;
+            sc:name "Sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0097,
@@ -134250,7 +125390,7 @@ Multiscale Complex Genomics (MuG) VM""" ;
     sc:url "http://mmb.irbbarcelona.org/www/" .
 
 <https://bio.tools/chromcontact> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0622,
@@ -134272,18 +125412,18 @@ Multiscale Complex Genomics (MuG) VM""" ;
 
 <https://bio.tools/chromdraw> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1276" ;
-            sc:name "Nucleic acid features" ;
-            sc:sameAs "http://edamontology.org/data_1276" ],
+            sc:additionalType "http://edamontology.org/data_3236" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Cytoband position" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3236" ;
-            sc:name "Cytoband position" ;
-            sc:sameAs "http://edamontology.org/data_3236" ] ;
+            sc:additionalType "http://edamontology.org/data_1276" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Nucleic acid features" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1283" ;
-            sc:name "Cytogenetic map" ;
-            sc:sameAs "http://edamontology.org/data_1283" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1283" ;
+            sc:encodingFormat "http://edamontology.org/format_3604" ;
+            sc:name "Cytogenetic map" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0092 ;
@@ -134303,7 +125443,7 @@ Multiscale Complex Genomics (MuG) VM""" ;
     biotools:primaryContact "Jan Janecka" .
 
 <https://bio.tools/chromebat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0654,
@@ -134319,7 +125459,7 @@ Multiscale Complex Genomics (MuG) VM""" ;
     biotools:primaryContact "Oluwatosin Oluwadare" .
 
 <https://bio.tools/chromegcn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3169,
@@ -134333,8 +125473,20 @@ Multiscale Complex Genomics (MuG) VM""" ;
     sc:name "ChromeGCN" ;
     sc:url "https://github.com/QData/ChromeGCN" .
 
+<https://bio.tools/chromeister> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:applicationSubCategory edam:topic_0080,
+        edam:topic_0797 ;
+    sc:citation <https://doi.org/10.1038/s41598-019-46773-w> ;
+    sc:description "An ultra fast, heuristic approach to detect conserved signals in extremely large pairwise genome comparisons (dotplot)." ;
+    sc:featureList edam:operation_0490 ;
+    sc:license "GPL-3.0" ;
+    sc:name "Chromeister" ;
+    sc:softwareVersion "1.5.a" ;
+    sc:url "https://github.com/estebanpw/chromeister" .
+
 <https://bio.tools/chromheatmap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -134353,7 +125505,7 @@ Multiscale Complex Genomics (MuG) VM""" ;
     biotools:primaryContact "Tim F. Rayner" .
 
 <https://bio.tools/chromhmm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3173 ;
     sc:citation "pubmed:22373907" ;
@@ -134369,7 +125521,7 @@ Multiscale Complex Genomics (MuG) VM""" ;
     biotools:primaryContact "Jason Ernst" .
 
 <https://bio.tools/chromnet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0602,
@@ -134386,8 +125538,31 @@ Multiscale Complex Genomics (MuG) VM""" ;
     sc:url "http://chromnet.cs.washington.edu/" ;
     biotools:primaryContact "Su-In Lee" .
 
+<https://bio.tools/chromomap> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_0621,
+        edam:topic_0625,
+        edam:topic_2885,
+        edam:topic_3173 ;
+    sc:citation <https://doi.org/10.1186/S12859-021-04556-Z>,
+        "pmcid:PMC8753883",
+        "pubmed:35016614" ;
+    sc:description "R package for interactive visualization of multi-omics data and annotation of chromosomes." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_0525,
+        edam:operation_3196 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "chromoMap" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://lakshay-anand.github.io/chromoMap/index.html" .
+
 <https://bio.tools/chromonomer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
@@ -134407,7 +125582,7 @@ Multiscale Complex Genomics (MuG) VM""" ;
     sc:url "http://catchenlab.life.illinois.edu/chromonomer" .
 
 <https://bio.tools/chromopainter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -134427,17 +125602,27 @@ Multiscale Complex Genomics (MuG) VM""" ;
     sc:url "https://people.maths.bris.ac.uk/~madjl/finestructure-old/chromopainter_info.html" .
 
 <https://bio.tools/chromosight> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2856" ;
+            sc:encodingFormat "http://edamontology.org/format_3590" ;
+            sc:name "Structural distance matrix" ] ;
+    bsc:output [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_0951" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Statistical estimate score" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0621,
         edam:topic_0654,
         edam:topic_3473 ;
+    sc:author <https://orcid.org/0000-0002-1126-1535> ;
     sc:citation <https://doi.org/10.1038/s41467-020-19562-7>,
         <https://doi.org/10.1101/2020.03.08.981910> ;
     sc:description "Chromosight is an algorithm inspired from computer vision that can detect patterns in Hi-C maps. Chromosight has greater sensitivity than existing methods, while being faster and applicable to any type of genomes, including bacteria, viruses, yeasts and mammals." ;
     sc:featureList edam:operation_2429,
+        edam:operation_3222,
         edam:operation_3435,
         edam:operation_3501 ;
     sc:name "Chromosight" ;
@@ -134445,7 +125630,7 @@ Multiscale Complex Genomics (MuG) VM""" ;
     sc:url "https://github.com/koszullab/chromosight" .
 
 <https://bio.tools/chromoviz> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0203,
@@ -134462,7 +125647,7 @@ Multiscale Complex Genomics (MuG) VM""" ;
     sc:url "http://www.snubi.org/software/ChromoViz/" .
 
 <https://bio.tools/chromozoom> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0654 ;
@@ -134476,7 +125661,7 @@ Multiscale Complex Genomics (MuG) VM""" ;
     sc:url "http://chromozoom.org" .
 
 <https://bio.tools/chromplot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -134495,7 +125680,7 @@ Multiscale Complex Genomics (MuG) VM""" ;
     biotools:primaryContact "Karen Y. Orostica" .
 
 <https://bio.tools/chromscape> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0204,
@@ -134518,7 +125703,7 @@ Multiscale Complex Genomics (MuG) VM""" ;
     sc:url "https://vallotlab.shinyapps.io/ChromSCape/" .
 
 <https://bio.tools/chromstar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3169 ;
@@ -134536,7 +125721,7 @@ Multiscale Complex Genomics (MuG) VM""" ;
     biotools:primaryContact "Aaron Taudt" .
 
 <https://bio.tools/chromswitch> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0085,
         edam:topic_0203,
@@ -134557,7 +125742,7 @@ Multiscale Complex Genomics (MuG) VM""" ;
     biotools:primaryContact "Selin Jessa" .
 
 <https://bio.tools/chromvar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0749,
@@ -134576,7 +125761,7 @@ Multiscale Complex Genomics (MuG) VM""" ;
     biotools:primaryContact "GreenleafLab" .
 
 <https://bio.tools/chronic_vs_clinic> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_3305,
         edam:topic_3382,
@@ -134595,7 +125780,7 @@ Multiscale Complex Genomics (MuG) VM""" ;
     biotools:primaryContact "Pavel Skums" .
 
 <https://bio.tools/chronoroot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0780,
@@ -134617,18 +125802,15 @@ Multiscale Complex Genomics (MuG) VM""" ;
 
 <https://bio.tools/chronos> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3112" ;
-            sc:name "Gene expression matrix" ;
-            sc:sameAs "http://edamontology.org/data_3112" ] ;
+            sc:additionalType "http://edamontology.org/data_3112" ;
+            sc:name "Gene expression matrix" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ],
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:name "Plot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:name "Pathway or network" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0602,
@@ -134653,7 +125835,7 @@ Multiscale Complex Genomics (MuG) VM""" ;
         "Panos Balomenos" .
 
 <https://bio.tools/chronos-crispr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2640 ;
     sc:citation <https://doi.org/10.1101/2021.02.25.432728> ;
@@ -134664,8 +125846,26 @@ Multiscale Complex Genomics (MuG) VM""" ;
     sc:name "Chronos" ;
     sc:url "https://github.com/broadinstitute/chronos" .
 
+<https://bio.tools/chronumental> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0084,
+        edam:topic_0199,
+        edam:topic_0621 ;
+    sc:citation <https://doi.org/10.1101/2021.10.27.465994> ;
+    sc:description "Chronumental is a tool for creating a \"time-tree\" (where distance on the tree represents time) from a phylogenetic divergence-tree (where distance on the tree reflects a number of genetic substitutions)." ;
+    sc:featureList edam:operation_0323,
+        edam:operation_0326,
+        edam:operation_0567,
+        edam:operation_3942 ;
+    sc:name "Chronumental" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://github.com/theosanderson/chronumental" .
+
 <https://bio.tools/chsalign> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0099,
@@ -134685,14 +125885,14 @@ Multiscale Complex Genomics (MuG) VM""" ;
     biotools:primaryContact "Jason T.L. Wang" .
 
 <https://bio.tools/chunkchromosome> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:description "ChunkChromosome is a helper utility for minimac and MaCH. It can be used to facilitate analyses of very large datasets in overlapping slices." ;
     sc:name "ChunkChromosome" ;
     sc:url "https://genome.sph.umich.edu/wiki/ChunkChromosome" .
 
 <https://bio.tools/cibex> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3070,
@@ -134713,7 +125913,7 @@ Multiscale Complex Genomics (MuG) VM""" ;
     sc:url "http://cibex.nig.ac.jp/" .
 
 <https://bio.tools/cicero> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Script" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -134731,8 +125931,55 @@ Multiscale Complex Genomics (MuG) VM""" ;
     sc:name "CICERO" ;
     sc:url "https://github.com/stjude/Cicero" .
 
+<https://bio.tools/cicersptedb> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0196,
+        edam:topic_0625,
+        edam:topic_0780,
+        edam:topic_0798,
+        edam:topic_2885 ;
+    sc:citation <https://doi.org/10.1371/JOURNAL.PONE.0259540>,
+        "pmcid:PMC8584679",
+        "pubmed:34762703" ;
+    sc:description "A web-based database for high-resolution genome-wide identification of transposable elements in Cicer species." ;
+    sc:featureList edam:operation_0525,
+        edam:operation_2421,
+        edam:operation_3196 ;
+    sc:isAccessibleForFree true ;
+    sc:name "CicerSpTEdb" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://cicersptedb.easyomics.org/index.php" .
+
+<https://bio.tools/ciclops> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library",
+        "Workflow" ;
+    sc:applicationSubCategory edam:topic_2259,
+        edam:topic_3170,
+        edam:topic_3308,
+        edam:topic_3360,
+        edam:topic_3518 ;
+    sc:citation <https://doi.org/10.1016/J.XPRO.2022.101583>,
+        "pmcid:PMC9307566",
+        "pubmed:35880126" ;
+    sc:description "Cross-platform training In CLinical Outcome PredictionS (ciclops) is a pipeline for building clinical outcome prediction models on training dataset and transfer learning on validation datasets." ;
+    sc:featureList edam:operation_2428,
+        edam:operation_3435,
+        edam:operation_3659 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "Ciclops" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://pypi.org/project/ciclops/" .
+
 <https://bio.tools/cidacs-rl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3393 ;
     sc:citation <https://doi.org/10.1186/S12911-020-01285-W>,
@@ -134747,7 +125994,7 @@ Multiscale Complex Genomics (MuG) VM""" ;
     sc:url "https://github.com/gcgbarbosa/cidacs-rl-v1" .
 
 <https://bio.tools/cidane> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3320,
@@ -134769,7 +126016,7 @@ Multiscale Complex Genomics (MuG) VM""" ;
         "Knut Reinert" .
 
 <https://bio.tools/cider> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -134788,7 +126035,7 @@ Multiscale Complex Genomics (MuG) VM""" ;
     biotools:primaryContact "Alex S. Holehouse" .
 
 <https://bio.tools/cider-p> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -134807,8 +126054,29 @@ Multiscale Complex Genomics (MuG) VM""" ;
         "Windows" ;
     sc:url "https://github.com/dbwilburn/cider" .
 
+<https://bio.tools/cider_r> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0769,
+        edam:topic_2229,
+        edam:topic_3170 ;
+    sc:citation <https://doi.org/10.1186/S13059-021-02561-2>,
+        "pmcid:PMC8667531",
+        "pubmed:34903266" ;
+    sc:description "R package CIDER: Meta-Clustering for Single-Cell Data Integration and Evaluation" ;
+    sc:featureList edam:operation_3223,
+        edam:operation_3432,
+        edam:operation_3891 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "CIDER" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/zhiyhu/CIDER" .
+
 <https://bio.tools/cif> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0621,
@@ -134828,8 +126096,29 @@ Multiscale Complex Genomics (MuG) VM""" ;
     biotools:primaryContact "David M. Geiser",
         "Kerry O'Donnell" .
 
+<https://bio.tools/ciftitools> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_2269,
+        edam:topic_3304,
+        edam:topic_3384,
+        edam:topic_3444 ;
+    sc:citation <https://doi.org/10.1016/J.NEUROIMAGE.2022.118877>,
+        "pmcid:PMC9119143",
+        "pubmed:35051581" ;
+    sc:description "A package for reading, writing, visualizing, and manipulating CIFTI files in R." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3435,
+        edam:operation_3659 ;
+    sc:isAccessibleForFree true ;
+    sc:name "ciftiTools" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/mandymejia/ciftiTools/" .
+
 <https://bio.tools/ciliaq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0621,
@@ -134847,18 +126136,17 @@ Multiscale Complex Genomics (MuG) VM""" ;
 
 <https://bio.tools/ciliquant> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3210" ;
-            sc:name "Genome index" ;
-            sc:sameAs "http://edamontology.org/data_3210" ],
+            sc:additionalType "http://edamontology.org/data_3112" ;
+            sc:encodingFormat "http://edamontology.org/format_3003" ;
+            sc:name "Gene expression matrix" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3112" ;
-            sc:name "Gene expression matrix" ;
-            sc:sameAs "http://edamontology.org/data_3112" ] ;
+            sc:additionalType "http://edamontology.org/data_3210" ;
+            sc:encodingFormat "http://edamontology.org/format_3003" ;
+            sc:name "Genome index" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1270" ;
-            sc:name "Feature table" ;
-            sc:sameAs "http://edamontology.org/data_1270" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1270" ;
+            sc:name "Feature table" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_3320 ;
@@ -134882,7 +126170,7 @@ Together with the circ fraction (circ/(circ+lin)), a 95% confidence interval is
     sc:url "https://github.com/OncoRNALab/CiLiQuant" .
 
 <https://bio.tools/cimbinator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0202,
         edam:topic_3336,
@@ -134899,8 +126187,31 @@ Together with the circ fraction (circ/(circ+lin)), a 95% confidence interval is
     biotools:primaryContact "Miguel Vazquez",
         "Åsmund Flobak" .
 
+<https://bio.tools/cime> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Desktop application" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_2258,
+        edam:topic_3047,
+        edam:topic_3375,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1186/S13321-022-00600-Z>,
+        "pmcid:PMC8981840",
+        "pubmed:35379315" ;
+    sc:description "CIME (ChemInformatics Model Explorer), an interactive web-based system that allows users to inspect chemical data sets, visualize model explanations, compare interpretability techniques, and explore subgroups of compounds." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3935,
+        edam:operation_3938 ;
+    sc:isAccessibleForFree true ;
+    sc:license "BSD-3-Clause" ;
+    sc:name "CIME" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://github.com/jku-vds-lab/cime" .
+
 <https://bio.tools/cimti> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3335,
         edam:topic_3360,
         edam:topic_3474 ;
@@ -134916,7 +126227,7 @@ Click on the different areas to enter strain values.""" ;
     sc:url "https://cimti.usj.edu.lb/strain/index.html" .
 
 <https://bio.tools/cimtools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0821,
@@ -134935,7 +126246,7 @@ Click on the different areas to enter strain values.""" ;
     biotools:primaryContact <https://orcid.org/0000-0002-3834-6985> .
 
 <https://bio.tools/cindex> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0622,
@@ -134955,7 +126266,7 @@ Click on the different areas to enter strain values.""" ;
     biotools:primaryContact "Yuriy Gusev" .
 
 <https://bio.tools/cindex_FASTQ> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_3168 ;
@@ -134970,8 +126281,46 @@ Click on the different areas to enter strain values.""" ;
     sc:operatingSystem "Linux" ;
     sc:url "https://github.com/Hongweihuo-Lab/CIndex" .
 
+<https://bio.tools/cinema_snap> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workflow" ;
+    sc:applicationSubCategory edam:topic_0769,
+        edam:topic_2828,
+        edam:topic_3520 ;
+    sc:citation <https://doi.org/10.1063/5.0057878>,
+        "pubmed:34717419" ;
+    sc:description "Real-time tools for analysis of dynamic diamond anvil cell experiment data." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3453,
+        edam:operation_3454 ;
+    sc:isAccessibleForFree true ;
+    sc:license "BSD-3-Clause" ;
+    sc:name "Cinema Snap" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/cinemascience/cinema_snap" .
+
+<https://bio.tools/cinmetrics> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0625,
+        edam:topic_0634,
+        edam:topic_0654,
+        edam:topic_2640,
+        edam:topic_3068 ;
+    sc:citation <https://doi.org/10.1101/2021.11.15.467294> ;
+    sc:description "An R package for chromosomal instability analysis." ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "CINmetrics" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://cran.r-project.org/package=CINmetrics" .
+
 <https://bio.tools/cipher> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_3169,
@@ -134989,7 +126338,7 @@ Click on the different areas to enter strain values.""" ;
         "Iván D’Orso" .
 
 <https://bio.tools/cipher-sc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3308 ;
     sc:citation <https://doi.org/10.1109/TCBB.2020.3017547>,
@@ -135000,7 +126349,7 @@ Click on the different areas to enter strain values.""" ;
     sc:url "http://github.com/YidingZhang117/CIPHER-SC" .
 
 <https://bio.tools/cipr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -135021,7 +126370,7 @@ Click on the different areas to enter strain values.""" ;
     sc:url "https://aekiz.shinyapps.io/CIPR/" .
 
 <https://bio.tools/cipres> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3293,
         edam:topic_3307,
@@ -135048,7 +126397,7 @@ Click on the different areas to enter strain values.""" ;
         "Wayne Pfeiffer" .
 
 <https://bio.tools/cir-net> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3384,
@@ -135062,7 +126411,7 @@ Click on the different areas to enter strain values.""" ;
     sc:url "https://github.com/CloudDataLab/CIR-Net" .
 
 <https://bio.tools/circ2go> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0203,
@@ -135082,7 +126431,7 @@ Click on the different areas to enter strain values.""" ;
     sc:url "https://circ2GO.dkfz.de" .
 
 <https://bio.tools/circMeta> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_3170,
         edam:topic_3512 ;
@@ -135096,7 +126445,7 @@ Click on the different areas to enter strain values.""" ;
     sc:url "https://github.com/lichen-lab/circMeta" .
 
 <https://bio.tools/circR2Disease> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0634,
@@ -135118,7 +126467,7 @@ Circular RNAs (circRNAs) are widely expressed in diverse eukaryotic species and
     sc:url "http://bioinfo.snnu.edu.cn/CircR2Disease/" .
 
 <https://bio.tools/circRNA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0749,
         edam:topic_3474 ;
@@ -135133,54 +126482,8 @@ Circular RNAs (circRNAs) are widely expressed in diverse eukaryotic species and
     sc:name "circRNA" ;
     sc:url "https://github.com/chl556/Contextual_Regression_for_CircRNA" .
 
-<https://bio.tools/circRNA-disease> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0602,
-        edam:topic_0634,
-        edam:topic_3360,
-        edam:topic_3474,
-        edam:topic_3512 ;
-    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTZ825>,
-        "pubmed:31793982" ;
-    sc:description """An Efficient Approach based on Multi-sources Information to Predict CircRNA-disease Associations Using Deep Convoltional Neural Network.
-
-In this project, we propose a novel computational method based on multi-source information combined with deep convolutional neural network to predict circRNA-disease associations. The method first fuses multi-source information including disease semantic similarity, disease Gaussian interaction profile kernel similarity, and circRNA Gaussian interaction profile kernel similarity, and then extracts its hidden deep feature through the convolutional neural network, and finally sends them to the extreme learning machine classifier for prediction.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'CircRNA-disease Associations Using Deep Convoltional', 'CircRNA-disease Associations Using', 'CircRNA-disease Associations Using Deep', 'circRNA-disease associations'""" ;
-    sc:featureList edam:operation_0306,
-        edam:operation_2492,
-        edam:operation_3439 ;
-    sc:name "circRNA-disease" ;
-    sc:url "https://github.com/look0012/circRNA-Disease-association" .
-
-<https://bio.tools/circRNA_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0108,
-        edam:topic_0659,
-        edam:topic_3308,
-        edam:topic_3419,
-        edam:topic_3512 ;
-    sc:citation <https://doi.org/10.1016/J.BIOPSYCH.2019.07.029>,
-        "pubmed:31570194" ;
-    sc:description """The Landscape of Circular RNA Expression in the Human Brain.
-
-The landscape of circRNA expression in the human brain.
-
-Gokool et al. Biological Psychiatry (2019).
-
-Circular RNAs (circRNAs) are enriched in the mammalian brain and are upregulated in response to neuronal differentiation and depolarisation. These RNA molecules, formed by non-canonical back-splicing, have both regulatory and translational potential. Here, we carried out an extensive characterisation of circRNA expression in the human brain, in nearly two hundred human brain samples, from both healthy individuals and autism cases.
-
-||| NAME EQUAL TO (PUB. DIFFERENT) bio.tools/circRNA.
-
-||| COMMON LINK WITH (PUB. & NAME DIFFERENT) bio.tools/genomics_virtual_lab (EDU.AU).
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'Circular RNA'""" ;
-    sc:featureList edam:operation_3463,
-        edam:operation_3792,
-        edam:operation_3800 ;
-    sc:name "circRNA_autogenerated" ;
-    sc:url "http://www.voineagulab.unsw.edu.au/circ_rna" .
-
 <https://bio.tools/circRNAwrap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3170,
@@ -135202,7 +126505,7 @@ Circular RNAs (circRNAs) are enriched in the mammalian brain and are upregulated
     biotools:primaryContact "Yi Zhao" .
 
 <https://bio.tools/circad> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0632,
         edam:topic_0634,
@@ -135219,19 +126522,68 @@ Circular RNAs (circRNAs) are enriched in the mammalian brain and are upregulated
     sc:url "http://clingen.igib.res.in/circad/" .
 
 <https://bio.tools/circadiomics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web service" ;
-    sc:applicationSubCategory edam:topic_3391 ;
-    sc:citation <https://doi.org/10.1093/nar/gky441> ;
+    sc:applicationSubCategory edam:topic_3391,
+        edam:topic_3407 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAC419>,
+        <https://doi.org/10.1093/nar/gky441>,
+        "pmcid:PMC9252794",
+        "pubmed:35657089" ;
     sc:description "Integrating circadian genomics, transcriptomics, proteomics and metabolomics." ;
-    sc:featureList edam:operation_2409 ;
+    sc:featureList edam:operation_2409,
+        edam:operation_3435,
+        edam:operation_3436,
+        edam:operation_3454 ;
     sc:name "CircadiOmics" ;
     sc:softwareHelp <http://circadiomics.ics.uci.edu/help#trouble> ;
     sc:url "http://circadiomics.ics.uci.edu" .
 
+<https://bio.tools/circall> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0659,
+        edam:topic_3170,
+        edam:topic_3308,
+        edam:topic_3320,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.1186/S12859-021-04418-8>,
+        "pmcid:PMC8513298",
+        "pubmed:34645386" ;
+    sc:description "A fast and accurate methodology for discovery of circular RNAs from paired-end RNA-sequencing data." ;
+    sc:featureList edam:operation_1812,
+        edam:operation_3198,
+        edam:operation_3431 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "Circall" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://www.meb.ki.se/sites/biostatwiki/circall" .
+
+<https://bio.tools/circapower> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0121,
+        edam:topic_3172,
+        edam:topic_3308,
+        edam:topic_3518,
+        edam:topic_3678 ;
+    sc:citation <https://doi.org/10.1101/2022.01.19.476930> ;
+    sc:description "Experimental Design and Power Calculation in Omics Circadian Rhythmicity Detection." ;
+    sc:featureList edam:operation_3659 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "CircaPower" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/circaPower/circaPower" .
+
 <https://bio.tools/circast> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3170,
@@ -135251,7 +126603,7 @@ Circular RNAs (circRNAs) are enriched in the mammalian brain and are upregulated
     sc:url "https://github.com/xiaofengsong/CircAST" .
 
 <https://bio.tools/circatlas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0659,
@@ -135270,26 +126622,22 @@ Circular RNAs (circRNAs) are enriched in the mammalian brain and are upregulated
 
 <https://bio.tools/circbase> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0916" ;
-            sc:name "Gene report" ;
-            sc:sameAs "http://edamontology.org/data_0916" ],
+            sc:additionalType "http://edamontology.org/data_0916" ;
+            sc:name "Gene report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0842" ;
-            sc:name "Identifier" ;
-            sc:sameAs "http://edamontology.org/data_0842" ],
+            sc:additionalType "http://edamontology.org/data_0842" ;
+            sc:name "Identifier" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2012" ;
-            sc:name "Sequence coordinates" ;
-            sc:sameAs "http://edamontology.org/data_2012" ] ;
+            sc:additionalType "http://edamontology.org/data_2012" ;
+            sc:name "Sequence coordinates" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3496" ;
-            sc:name "RNA sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_3496" ],
+            sc:additionalType "http://edamontology.org/data_3496" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "RNA sequence (raw)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1270" ;
-            sc:name "Feature table" ;
-            sc:sameAs "http://edamontology.org/data_1270" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1270" ;
+            sc:name "Feature table" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0099 ;
     sc:citation <https://doi.org/10.1261/rna.043687.113> ;
@@ -135302,8 +126650,28 @@ Circular RNAs (circRNAs) are enriched in the mammalian brain and are upregulated
     sc:softwareHelp <http://www.circbase.org/doc/help_mod.html> ;
     sc:url "http://www.circbase.org/" .
 
+<https://bio.tools/circcnn> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0160,
+        edam:topic_0659,
+        edam:topic_3320,
+        edam:topic_3474,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.1186/S12864-022-08820-1>,
+        "pmcid:PMC9373444",
+        "pubmed:35962324" ;
+    sc:description "Python code for Predicting the Back-Splicing Sites for Circular RNA Formation by Cross-Validation and Convolutional Neural Networks" ;
+    sc:featureList edam:operation_0253,
+        edam:operation_3435,
+        edam:operation_3927 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "CircCNN" ;
+    sc:url "https://github.com/szhh521/CircCNN" .
+
 <https://bio.tools/circdbg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_3170,
@@ -135321,7 +126689,7 @@ Circular RNAs (circRNAs) are enriched in the mammalian brain and are upregulated
     sc:url "https://github.com/lxwgcool/CircDBG" .
 
 <https://bio.tools/circexp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0659,
@@ -135340,7 +126708,7 @@ Circular RNAs (circRNAs) are enriched in the mammalian brain and are upregulated
     sc:url "http://soft.bioinfo-minzhao.org/circexp" .
 
 <https://bio.tools/circexplorer3> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -135359,7 +126727,7 @@ Circular RNAs (circRNAs) are enriched in the mammalian brain and are upregulated
     sc:url "https://github.com/YangLab/CLEAR" .
 
 <https://bio.tools/circhic> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0654,
@@ -135373,7 +126741,7 @@ Circular RNAs (circRNAs) are enriched in the mammalian brain and are upregulated
     sc:url "https://tree-timc.github.io/circhic/" .
 
 <https://bio.tools/circimpact> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -135398,14 +126766,14 @@ Circular RNAs (circRNAs) are enriched in the mammalian brain and are upregulated
 
 <https://bio.tools/circle-seq> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0848" ;
-            sc:name "Raw sequence" ;
-            sc:sameAs "http://edamontology.org/data_0848" ] ;
+            sc:additionalType "http://edamontology.org/data_0848" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Raw sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3047 ;
@@ -135420,8 +126788,31 @@ Circular RNAs (circRNAs) are enriched in the mammalian brain and are upregulated
     sc:url "https://github.com/tsailabSJ/circleseq" ;
     biotools:primaryContact "Shengdar Q. Tsai" .
 
+<https://bio.tools/circlebase> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Bioinformatics portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0602,
+        edam:topic_0654,
+        edam:topic_2640,
+        edam:topic_3169,
+        edam:topic_3295 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAB1104>,
+        "pmcid:PMC8728191",
+        "pubmed:34792166" ;
+    sc:description "An integrated resource and analysis platform for human eccDNAs." ;
+    sc:featureList edam:operation_2437,
+        edam:operation_3435,
+        edam:operation_3501 ;
+    sc:isAccessibleForFree true ;
+    sc:name "CircleBase" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://circlebase.maolab.org/" .
+
 <https://bio.tools/circlgb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -135439,7 +126830,7 @@ Circular RNAs (circRNAs) are enriched in the mammalian brain and are upregulated
     sc:url "https://github.com/Peppags/circLGB-circMRT" .
 
 <https://bio.tools/circlize> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3391 ;
     sc:author "Zuguang Gu" ;
@@ -135455,7 +126846,7 @@ Circular RNAs (circRNAs) are enriched in the mammalian brain and are upregulated
     sc:url "https://CRAN.R-project.org/package=circlize" .
 
 <https://bio.tools/circlncrnanet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0602,
@@ -135470,8 +126861,32 @@ Circular RNAs (circRNAs) are enriched in the mammalian brain and are upregulated
     sc:url "https://github.com/smw1414/circlncRNAnet" ;
     biotools:primaryContact "Bertrand Chin-Ming Tan" .
 
+<https://bio.tools/circmimi> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0659,
+        edam:topic_0780,
+        edam:topic_3500,
+        edam:topic_3512,
+        edam:topic_3794 ;
+    sc:citation <https://doi.org/10.1186/S12859-022-04692-0>,
+        "pmcid:PMC9074202",
+        "pubmed:35524165" ;
+    sc:description "CircMiMi (circRNA-miRNA-mRNA interactions), a modular, Python-based software to identify circRNA-miRNA-mRNA interactions across 18 species (including 16 animals and 2 plants) with the given coordinates of circRNA junctions." ;
+    sc:featureList edam:operation_0463,
+        edam:operation_3216,
+        edam:operation_3792 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "CircMiMi" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://circmimi.genomics.sinica.edu.tw/" .
+
 <https://bio.tools/circmine> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0108,
@@ -135493,7 +126908,7 @@ Circular RNAs (circRNAs) are enriched in the mammalian brain and are upregulated
     sc:url "http://hpcc.siat.ac.cn/circmine" .
 
 <https://bio.tools/circminer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3320,
@@ -135510,20 +126925,67 @@ Circular RNAs (circRNAs) are enriched in the mammalian brain and are upregulated
     sc:name "CircMiner" ;
     sc:url "https://github.com/vpc-ccg/circminer" .
 
+<https://bio.tools/circnet> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0634,
+        edam:topic_0659,
+        edam:topic_0749,
+        edam:topic_2640,
+        edam:topic_3360 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAB1036>,
+        "pmcid:PMC8728223",
+        "pubmed:34850139" ;
+    sc:description "CircNet 2.0 provides a practical and user-friendly platform on which researchers can explore novel cancer biomarkers and circRNAs related to the pathogenesis, diagnosis, and therapy of malignant and other diseases." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_0337,
+        edam:operation_0463,
+        edam:operation_3792 ;
+    sc:isAccessibleForFree true ;
+    sc:name "CircNet" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareVersion "2.0" ;
+    sc:url "https://awi.cuhk.edu.cn/~CircNet" .
+
+<https://bio.tools/circompara2> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workbench" ;
+    sc:applicationSubCategory edam:topic_0091,
+        edam:topic_0659,
+        edam:topic_3170,
+        edam:topic_3308,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.1093/BIB/BBAB418>,
+        "pmcid:PMC8769706",
+        "pubmed:34698333" ;
+    sc:description "CirComPara2 is a computational pipeline to detect, quantify, and correlate expression of linear and circular RNAs from RNA-seq data that combines multiple circRNA-detection methods." ;
+    sc:featureList edam:operation_3192,
+        edam:operation_3216,
+        edam:operation_3219,
+        edam:operation_3799 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "CirComPara2" ;
+    sc:url "https://github.com/egaffo/CirComPara2" ;
+    biotools:primaryContact <https://orcid.org/0000-0001-6338-7677>,
+        <https://orcid.org/0000-0001-8240-3070> .
+
 <https://bio.tools/circos> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Image" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0797 ;
@@ -135539,7 +127001,7 @@ Circular RNAs (circRNAs) are enriched in the mammalian brain and are upregulated
     biotools:primaryContact "Martin Krzywinski" .
 
 <https://bio.tools/circosvcf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0199,
@@ -135556,7 +127018,7 @@ Circular RNAs (circRNAs) are enriched in the mammalian brain and are upregulated
     biotools:primaryContact "M. Salmon-Divon" .
 
 <https://bio.tools/circparser> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -135578,7 +127040,7 @@ Circular RNAs (circRNAs) are enriched in the mammalian brain and are upregulated
     sc:url "https://github.com/SharkoTools/CircParser" .
 
 <https://bio.tools/circplant> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0659,
@@ -135594,7 +127056,7 @@ Circular RNAs (circRNAs) are enriched in the mammalian brain and are upregulated
     sc:url "http://bis.zju.edu.cn/circplant" .
 
 <https://bio.tools/circr2cancer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0219,
         edam:topic_0659,
@@ -135612,7 +127074,7 @@ Circular RNAs (circRNAs) are enriched in the mammalian brain and are upregulated
     sc:url "http://gyanxet-beta.com/circdb/" .
 
 <https://bio.tools/circrb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0128,
@@ -135629,8 +127091,27 @@ Circular RNAs (circRNAs) are enriched in the mammalian brain and are upregulated
     sc:name "circRB" ;
     sc:url "https://github.com/wzf171/circRB" .
 
+<https://bio.tools/circrip> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Workbench" ;
+    sc:applicationSubCategory edam:topic_0659,
+        edam:topic_0749,
+        edam:topic_3320,
+        edam:topic_3512,
+        edam:topic_3794 ;
+    sc:citation <https://doi.org/10.1093/BIB/BBAC186>,
+        "pubmed:35641157" ;
+    sc:description "circRIP: An accurate tool for identifying circRNA-RBP interaction." ;
+    sc:featureList edam:operation_3198,
+        edam:operation_3357,
+        edam:operation_3901 ;
+    sc:license "Not licensed" ;
+    sc:name "circRIP" ;
+    sc:url "https://github.com/bioinfolabwhu/circRIP" .
+
 <https://bio.tools/circrnaprofiler> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0659,
         edam:topic_0769,
@@ -135647,7 +127128,7 @@ Circular RNAs (circRNAs) are enriched in the mammalian brain and are upregulated
     sc:url "https://github.com/Aufiero/circRNAprofiler" .
 
 <https://bio.tools/circrnas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_2640,
         edam:topic_3308,
@@ -135662,7 +127143,7 @@ Circular RNAs (circRNAs) are enriched in the mammalian brain and are upregulated
     sc:url "https://mulongdu.shinyapps.io/circrnas_in_fluids/" .
 
 <https://bio.tools/circscan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -135681,7 +127162,7 @@ Circular RNAs (circRNAs) are enriched in the mammalian brain and are upregulated
     sc:url "https://github.com/johnlcd/CIRCScan" .
 
 <https://bio.tools/circtools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0632,
         edam:topic_0659,
@@ -135700,7 +127181,7 @@ Circular RNAs (circRNAs) are enriched in the mammalian brain and are upregulated
         "Tobias Jakobi" .
 
 <https://bio.tools/circulant-embedding-generating-stationary-gaussian-field> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269 ;
     sc:citation <https://doi.org/10.1007/978-3-319-10064-7_12> ;
@@ -135717,7 +127198,7 @@ Circular RNAs (circRNAs) are enriched in the mammalian brain and are upregulated
     biotools:primaryContact "Zdravko Botev" .
 
 <https://bio.tools/circular-statistics-toolbox> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3070,
@@ -135734,7 +127215,7 @@ Circular RNAs (circRNAs) are enriched in the mammalian brain and are upregulated
     biotools:primaryContact "Philipp Berens" .
 
 <https://bio.tools/circularlogo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0654,
@@ -135753,7 +127234,7 @@ Circular RNAs (circRNAs) are enriched in the mammalian brain and are upregulated
         "Zhenqing Ye" .
 
 <https://bio.tools/circvar-db> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0659,
@@ -135774,10 +127255,9 @@ Circular RNAs (circRNAs), the 3' and 5' ends of which are covalently linked, are
 
 <https://bio.tools/cirdna> a sc:SoftwareApplication ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1278" ;
-            sc:name "Genetic map" ;
-            sc:sameAs "http://edamontology.org/data_1278" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1278" ;
+            sc:name "Genetic map" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0092 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -135807,7 +127287,7 @@ Circular RNAs (circRNAs), the 3' and 5' ends of which are covalently linked, are
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/cirdna.html" .
 
 <https://bio.tools/ciri-vis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_3170,
@@ -135823,8 +127303,30 @@ Circular RNAs (circRNAs), the 3' and 5' ends of which are covalently linked, are
     sc:name "CIRI-vis" ;
     sc:url "https://sourceforge.net/projects/ciri/files/CIRI-vis" .
 
+<https://bio.tools/cirpred> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0082,
+        edam:topic_2814,
+        edam:topic_3398,
+        edam:topic_3520 ;
+    sc:citation <https://doi.org/10.1186/S12859-021-04403-1>,
+        "pmcid:PMC8513176",
+        "pubmed:34641789" ;
+    sc:description "CirPred is a structure modeling and linker design system for circularly permuted proteins. It is a protein engineering techniques based on a structural rearrangement phenomenon called circular permutation (CP), equivalent to connecting the native termini of a protein followed by creating new termini at another site. Although CP has been applied in many fields, its implementation is still costly because of inevitable trials and errors. Compared with state-of-the-art protein structure modeling methods, CirPred is the only one fully capable of both circularly-permuted modeling and traditional co-linear modeling." ;
+    sc:featureList edam:operation_0303,
+        edam:operation_0477,
+        edam:operation_2476,
+        edam:operation_4008 ;
+    sc:name "CirPred" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://140.113.120.231/~lab/CirPred/srv/" ;
+    biotools:primaryContact <https://orcid.org/0000-0001-8865-5113> .
+
 <https://bio.tools/cirrnapl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0659,
@@ -135842,7 +127344,7 @@ Circular RNAs (circRNAs), the 3' and 5' ends of which are covalently linked, are
     sc:url "http://server.malab.cn/CirRNAPL/" .
 
 <https://bio.tools/cisa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196 ;
     sc:description "CISA has been developed to integrate the assemblies into a hybrid set of contigs, resulting in assemblies of superior contiguity and accuracy, compared with the assemblies generated by the state-of-the-art assemblers and the hybrid assemblies merged by existing tools." ;
@@ -135854,7 +127356,7 @@ Circular RNAs (circRNAs), the 3' and 5' ends of which are covalently linked, are
     sc:url "http://sb.nhri.org.tw/CISA/en/CISA" .
 
 <https://bio.tools/cisgenome> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_3169,
@@ -135875,7 +127377,7 @@ Circular RNAs (circRNAs), the 3' and 5' ends of which are covalently linked, are
         "Wing Hung Wong" .
 
 <https://bio.tools/cisminer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0749,
@@ -135894,7 +127396,7 @@ Circular RNAs (circRNAs), the 3' and 5' ends of which are covalently linked, are
     biotools:primaryContact "Support" .
 
 <https://bio.tools/cismols> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0204,
@@ -135915,7 +127417,7 @@ Circular RNAs (circRNAs), the 3' and 5' ends of which are covalently linked, are
     biotools:primaryContact "Webmaster" .
 
 <https://bio.tools/cispath> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -135935,7 +127437,7 @@ Circular RNAs (circRNAs), the 3' and 5' ends of which are covalently linked, are
     biotools:primaryContact "Likun Wang" .
 
 <https://bio.tools/cisred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0621,
@@ -135954,7 +127456,7 @@ Circular RNAs (circRNAs), the 3' and 5' ends of which are covalently linked, are
     biotools:primaryContact "Questions or comments" .
 
 <https://bio.tools/cisregtest> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0749,
@@ -135975,7 +127477,7 @@ Circular RNAs (circRNAs), the 3' and 5' ends of which are covalently linked, are
     biotools:primaryContact "Alan Moses" .
 
 <https://bio.tools/cist> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203 ;
     sc:description "CIST (Confidence Intervals for SAGE Tags )is a Windows program for the analysis of gene expression data generated using SAGE (Serial Analysis of Gene Expression)." ;
@@ -135986,14 +127488,14 @@ Circular RNAs (circRNAs), the 3' and 5' ends of which are covalently linked, are
 
 <https://bio.tools/cistem> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3424" ;
-            sc:name "Raw image" ;
-            sc:sameAs "http://edamontology.org/data_3424" ] ;
+            sc:additionalType "http://edamontology.org/data_3424" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Raw image" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1710" ;
-            sc:name "Structure image" ;
-            sc:sameAs "http://edamontology.org/data_1710" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1710" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Structure image" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0092,
@@ -136013,7 +127515,7 @@ Circular RNAs (circRNAs), the 3' and 5' ends of which are covalently linked, are
     biotools:primaryContact "Timothy Grant" .
 
 <https://bio.tools/cistopic> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_0769,
         edam:topic_2229,
@@ -136031,7 +127533,7 @@ cisTopic v3: Faster topic modelling based on WarpLDA (see vignettes for details)
     sc:url "http://github.com/aertslab/cistopic" .
 
 <https://bio.tools/cistrome> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0769,
@@ -136052,7 +127554,7 @@ cisTopic v3: Faster topic modelling based on WarpLDA (see vignettes for details)
     biotools:primaryContact "Myles Brown Lab" .
 
 <https://bio.tools/cit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3298,
@@ -136072,7 +127574,7 @@ cisTopic v3: Faster topic modelling based on WarpLDA (see vignettes for details)
     biotools:primaryContact "Joshua Millstein" .
 
 <https://bio.tools/citation-js> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3068,
@@ -136089,7 +127591,7 @@ cisTopic v3: Faster topic modelling based on WarpLDA (see vignettes for details)
     sc:url "https://citation.js.org/" .
 
 <https://bio.tools/citdbase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -136108,7 +127610,7 @@ cisTopic v3: Faster topic modelling based on WarpLDA (see vignettes for details)
     sc:url "https://www.citdbase.org" .
 
 <https://bio.tools/cite-sort> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0625,
@@ -136127,22 +127629,20 @@ cisTopic v3: Faster topic modelling based on WarpLDA (see vignettes for details)
 
 <https://bio.tools/citexplore> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1187" ;
-            sc:name "PubMed ID" ;
-            sc:sameAs "http://edamontology.org/data_1187" ],
+            sc:additionalType "http://edamontology.org/data_1187" ;
+            sc:name "PubMed ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1187" ;
-            sc:name "PubMed ID" ;
-            sc:sameAs "http://edamontology.org/data_1187" ] ;
+            sc:additionalType "http://edamontology.org/data_1187" ;
+            sc:name "PubMed ID" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3505" ;
-            sc:name "Bibliography" ;
-            sc:sameAs "http://edamontology.org/data_3505" ],
+            sc:additionalType "http://edamontology.org/data_3505" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Bibliography" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3505" ;
-            sc:name "Bibliography" ;
-            sc:sameAs "http://edamontology.org/data_3505" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3505" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Bibliography" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_3068 ;
     sc:citation <https://doi.org/10.1093/nar/gkn741> ;
@@ -136156,24 +127656,46 @@ cisTopic v3: Faster topic modelling based on WarpLDA (see vignettes for details)
     sc:url "http://www.ebi.ac.uk/web_guidelines/html/mitigation/frontier_test_02.html" ;
     biotools:primaryContact "Help desk" .
 
+<https://bio.tools/citl> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Library" ;
+    sc:applicationSubCategory edam:topic_0099,
+        edam:topic_0203,
+        edam:topic_0602,
+        edam:topic_3068 ;
+    sc:citation <https://doi.org/10.3390/IJMS23063348>,
+        "pmcid:PMC8948830",
+        "pubmed:35328768" ;
+    sc:description "CITL (Causal inference with time-lagged information)  that  infer the time-lagged causality of genes using scRNA-seq data" ;
+    sc:featureList edam:operation_1781,
+        edam:operation_2437,
+        edam:operation_3625 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "CITL" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/wJDKnight/CITL-Rpackage" .
+
 <https://bio.tools/citrullia> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ],
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:name "Mass spectrometry data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3756" ;
-            sc:name "Localisation score" ;
-            sc:sameAs "http://edamontology.org/data_3756" ],
+            sc:additionalType "http://edamontology.org/data_3756" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Localisation score" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrum" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3591" ;
+            sc:name "Mass spectrum" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -136198,31 +127720,8 @@ cisTopic v3: Faster topic modelling based on WarpLDA (see vignettes for details)
     sc:url "https://github.com/Citrullia-SDU/Citrullia" ;
     biotools:primaryContact <https://orcid.org/0000-0002-7838-6180> .
 
-<https://bio.tools/citrus_greening> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0196,
-        edam:topic_0602,
-        edam:topic_0780,
-        edam:topic_3512,
-        edam:topic_3810 ;
-    sc:citation <https://doi.org/10.1101/869685> ;
-    sc:description """Chromosomal length reference assembly for Diaphorina citri using single-molecule sequencing and Hi-C proximity ligation with manually curated genes in developmental, structural and immune pathways.
-
-This site uses cookies to provide logins and other features. Please accept the use of cookies by clicking Accept.
-
-The citrus hosts infected by Huanglongbing or yellow dragon disease.
-
-The citrus greening disease (also called huanglongbing) has devastated the Florida citrus industry, and is now in CA and TX. Fruit from infected trees is safe to eat, but production is reduced so much that citrus may cease to be inexpensive and broadly available. If you are a citrus lover you should know that massive research efforts, including this project, are underway to keep citrus affordable and plentiful. See impact on US production..
-
-The Asian citrus psyllid is a sap-sucking, hemipteran bug in the family Psyllidae. The new v2.0 genome is online!""" ;
-    sc:featureList edam:operation_0524,
-        edam:operation_0525,
-        edam:operation_3192,
-        edam:operation_3216 ;
-    sc:name "citrus greening" ;
-    sc:url "https://citrusgreening.org/" .
-
 <https://bio.tools/citrusgreening> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0203,
@@ -136254,7 +127753,7 @@ Having trouble viewing events on the calendar?""" ;
     sc:url "https://citrusgreening.org/" .
 
 <https://bio.tools/citruskb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0625,
         edam:topic_2885,
@@ -136271,7 +127770,7 @@ Having trouble viewing events on the calendar?""" ;
     sc:url "http://bioinfo.deinfo.uepg.br/citrus" .
 
 <https://bio.tools/ckat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0208,
         edam:topic_0625,
@@ -136289,7 +127788,7 @@ Having trouble viewing events on the calendar?""" ;
     sc:url "https://cran.r-project.org/package=CKAT" .
 
 <https://bio.tools/ckd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_2640,
@@ -136312,7 +127811,7 @@ Having trouble viewing events on the calendar?""" ;
         "Yanxia Jiang" .
 
 <https://bio.tools/ckg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
         edam:topic_0769,
@@ -136329,7 +127828,7 @@ Having trouble viewing events on the calendar?""" ;
     sc:url "https://github.com/MannLabs/CKG" .
 
 <https://bio.tools/cki> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0634,
         edam:topic_2640,
@@ -136350,7 +127849,7 @@ CKI - Dark Kinase Knaowledgebase App.""" ;
     sc:url "http://cki.ccs.miami.edu" .
 
 <https://bio.tools/ckttd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0659,
@@ -136368,7 +127867,7 @@ CKI - Dark Kinase Knaowledgebase App.""" ;
     sc:url "http://www.ckttdb.org/" .
 
 <https://bio.tools/cladeoscope> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0602,
@@ -136388,8 +127887,47 @@ CKI - Dark Kinase Knaowledgebase App.""" ;
     sc:url "http://cladeoscope.cs.huji.ac.il" ;
     biotools:primaryContact <https://orcid.org/0000-0001-9521-3217> .
 
+<https://bio.tools/claffinity> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_2830,
+        edam:topic_3343 ;
+    sc:citation <https://doi.org/10.1021/ACS.JCIM.2C00285>,
+        "pmcid:PMC9131445",
+        "pubmed:35442032" ;
+    sc:description "A tool for investigating the impact of labelled ligand affinity in competition experiments." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3938 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "CLAffinity" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/stevenshave/competition-label-affinity" .
+
+<https://bio.tools/claire> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Workbench" ;
+    sc:applicationSubCategory edam:topic_3382,
+        edam:topic_3570 ;
+    sc:citation <https://doi.org/10.21105/JOSS.03038>,
+        "pmcid:PMC8923611",
+        "pubmed:35295546" ;
+    sc:description "CLAIRE stands for Constrained Large Deformation Diffeomorphic Image Registration. It is a C/C++ software package for velocity-based diffeomorphic image registration in three dimensions." ;
+    sc:featureList edam:operation_3443 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "CLAIRE" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/andreasmang/claire" .
+
 <https://bio.tools/clamsa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0621,
@@ -136406,8 +127944,24 @@ CKI - Dark Kinase Knaowledgebase App.""" ;
     sc:url "https://github.com/Gaius-Augustus/clamsa" ;
     biotools:primaryContact <https://orcid.org/0000-0001-8696-0384> .
 
+<https://bio.tools/clann> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0194 ;
+    sc:citation <https://doi.org/10.1093/bioinformatics/bti020>,
+        "pubmed:15374874" ;
+    sc:description "Constructing consensus trees and supertrees from multiple source trees" ;
+    sc:featureList edam:operation_3947 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-2.0" ;
+    sc:name "Clann" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/ChrisCreevey/clann" .
+
 <https://bio.tools/clantox> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -136426,7 +127980,7 @@ CKI - Dark Kinase Knaowledgebase App.""" ;
     biotools:primaryContact "Michal Linial" .
 
 <https://bio.tools/clap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0623,
         edam:topic_0736,
@@ -136445,7 +127999,7 @@ CKI - Dark Kinase Knaowledgebase App.""" ;
     biotools:primaryContact "N. Srinivasan" .
 
 <https://bio.tools/clara> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_2229,
@@ -136462,7 +128016,7 @@ CKI - Dark Kinase Knaowledgebase App.""" ;
     sc:url "https://clara.baker.edu.au" .
 
 <https://bio.tools/clarite> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0769,
@@ -136481,16 +128035,37 @@ CKI - Dark Kinase Knaowledgebase App.""" ;
     sc:softwareHelp <https://clarite-python.readthedocs.io/en/stable/> ;
     sc:url "https://github.com/HallLab/clarite-python" .
 
+<https://bio.tools/clarity> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_3295,
+        edam:topic_3299 ;
+    sc:citation <https://doi.org/10.1098/RSOS.202182>,
+        "pmcid:PMC8652278",
+        "pubmed:34909208" ;
+    sc:description "Clarity: An R package for Comparing SimiLARITY Matrices and comparing heterogeneous data using dissimilarity." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3432,
+        edam:operation_3891 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "CLARITY" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://github.com/danjlawson/CLARITY" .
+
 <https://bio.tools/clark> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3494" ;
-            sc:name "DNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3494" ] ;
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:encodingFormat "http://edamontology.org/format_2546" ;
+            sc:name "DNA sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3028" ;
-            sc:name "Taxonomy" ;
-            sc:sameAs "http://edamontology.org/data_3028" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3028" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Taxonomy" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1186/s12864-015-1419-2> ;
@@ -136507,7 +128082,7 @@ CKI - Dark Kinase Knaowledgebase App.""" ;
     biotools:primaryContact "Stefano Lonardi" .
 
 <https://bio.tools/clarke-ega> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3301 ;
     sc:description "Clarke EGA quantifies the accuracy of glucose estimates generated by meters as compared to reference" ;
@@ -136520,8 +128095,30 @@ CKI - Dark Kinase Knaowledgebase App.""" ;
     sc:url "https://www.mathworks.com/matlabcentral/fileexchange/20545-clarke-error-grid-analysis" ;
     biotools:primaryContact "Edgar Guevara" .
 
+<https://bio.tools/clash_analyst> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0128,
+        edam:topic_0659,
+        edam:topic_3170,
+        edam:topic_3512,
+        edam:topic_3794 ;
+    sc:citation <https://doi.org/10.3390/NCRNA8010006>,
+        "pmcid:PMC8788457",
+        "pubmed:35076587" ;
+    sc:description "A Web Server to Identify In Vivo RNA-RNA Interactions from CLASH Data." ;
+    sc:featureList edam:operation_0322,
+        edam:operation_3192,
+        edam:operation_3219 ;
+    sc:isAccessibleForFree true ;
+    sc:name "CLASH Analyst" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://cosbi7.ee.ncku.edu.tw/CLASHanalyst/" .
+
 <https://bio.tools/clasp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0102,
@@ -136536,7 +128133,7 @@ CKI - Dark Kinase Knaowledgebase App.""" ;
     sc:url "http://www.bioinf.uni-leipzig.de/Software/clasp/" .
 
 <https://bio.tools/classification_noise> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3305,
         edam:topic_3379,
@@ -136554,8 +128151,31 @@ CKI - Dark Kinase Knaowledgebase App.""" ;
     sc:url "https://imperfect-gold-standard.shinyapps.io/classification-noise/" ;
     biotools:primaryContact "Leo C. McHugh" .
 
+<https://bio.tools/classifierc> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application",
+        "Workbench" ;
+    sc:applicationSubCategory edam:topic_0749,
+        edam:topic_2640,
+        edam:topic_3170,
+        edam:topic_3308 ;
+    sc:citation <https://doi.org/10.1186/S12859-022-04641-X>,
+        "pmcid:PMC8974006",
+        "pubmed:35361119" ;
+    sc:description "classifieR a flexible interactive cloud-application for functional annotation of cancer transcriptomes." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_0337,
+        edam:operation_2436 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "classifieRc" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://generatr.qub.ac.uk/app/classifieRc" .
+
 <https://bio.tools/classifyber> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3068,
         edam:topic_3304,
@@ -136569,7 +128189,7 @@ CKI - Dark Kinase Knaowledgebase App.""" ;
     sc:url "https://brainlife.io/app/5d6fcae439867216d8496442" .
 
 <https://bio.tools/classifycnv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0769,
@@ -136585,7 +128205,7 @@ CKI - Dark Kinase Knaowledgebase App.""" ;
     sc:url "https://github.com/Genotek/ClassifyCNV" .
 
 <https://bio.tools/classifyr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0080 ;
@@ -136604,7 +128224,7 @@ CKI - Dark Kinase Knaowledgebase App.""" ;
     biotools:primaryContact "Dario Strbenac" .
 
 <https://bio.tools/classifyte> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0637,
@@ -136621,44 +128241,57 @@ CKI - Dark Kinase Knaowledgebase App.""" ;
     biotools:primaryContact <https://orcid.org/0000-0002-0110-2194>,
         <https://orcid.org/0000-0003-2425-2395> .
 
+<https://bio.tools/clbtope> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:description "CLBTope: Conformational and linear B-cell epitope prediction" ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "clbtope" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/clbtope/> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/clbtope/" .
+
 <https://bio.tools/clc_assembler> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3284" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0925" ;
+            sc:encodingFormat "http://edamontology.org/format_3693" ;
+            sc:name "Sequence assembly" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0925" ;
-            sc:name "Sequence assembly" ;
-            sc:sameAs "http://edamontology.org/data_0925" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2305" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3168 ;
@@ -136678,18 +128311,18 @@ CKI - Dark Kinase Knaowledgebase App.""" ;
 
 <https://bio.tools/clc_cas_to_sam> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2333" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ],
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Sequence trace" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
+            sc:name "Sequence trace" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:citation <https://doi.org/10.1093/nar/gkw343>,
@@ -136707,18 +128340,18 @@ CKI - Dark Kinase Knaowledgebase App.""" ;
 
 <https://bio.tools/clc_extract_consensus> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2333" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:citation <https://doi.org/10.1093/nar/gkw343>,
@@ -136736,18 +128369,18 @@ CKI - Dark Kinase Knaowledgebase App.""" ;
 
 <https://bio.tools/clc_find_variations> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2333" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_3168 ;
@@ -136767,14 +128400,14 @@ CKI - Dark Kinase Knaowledgebase App.""" ;
 
 <https://bio.tools/clc_find_variations_tab_convertor> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:citation <https://doi.org/10.1093/nar/gkw343>,
@@ -136791,26 +128424,26 @@ CKI - Dark Kinase Knaowledgebase App.""" ;
 
 <https://bio.tools/clc_mapper> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2333" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3168 ;
@@ -136830,26 +128463,26 @@ CKI - Dark Kinase Knaowledgebase App.""" ;
 
 <https://bio.tools/clc_mapper_legacy> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2333" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3168 ;
@@ -136869,22 +128502,22 @@ CKI - Dark Kinase Knaowledgebase App.""" ;
 
 <https://bio.tools/clc_mapping_info> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2333" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3168 ;
@@ -136905,14 +128538,14 @@ CKI - Dark Kinase Knaowledgebase App.""" ;
 
 <https://bio.tools/clc_sequence_info> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:citation <https://doi.org/10.1093/nar/gkw343>,
@@ -136930,18 +128563,18 @@ CKI - Dark Kinase Knaowledgebase App.""" ;
 
 <https://bio.tools/clc_unmapped_reads> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2333" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:citation <https://doi.org/10.1093/nar/gkw343>,
@@ -136958,7 +128591,7 @@ CKI - Dark Kinase Knaowledgebase App.""" ;
     biotools:primaryContact "Galaxy Support Team" .
 
 <https://bio.tools/clcbio_genomics_workbench> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
@@ -136989,7 +128622,7 @@ CKI - Dark Kinase Knaowledgebase App.""" ;
     biotools:primaryContact "Support" .
 
 <https://bio.tools/clcl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0659,
@@ -137003,7 +128636,7 @@ CKI - Dark Kinase Knaowledgebase App.""" ;
     sc:url "http://genome.ucf.edu/fly3UTRcluster/" .
 
 <https://bio.tools/cld> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0114,
@@ -137021,7 +128654,7 @@ CKI - Dark Kinase Knaowledgebase App.""" ;
     biotools:primaryContact "Michael Boutros" .
 
 <https://bio.tools/clean> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622 ;
     sc:citation <https://doi.org/10.1186/1471-2105-10-234> ;
@@ -137037,38 +128670,38 @@ CKI - Dark Kinase Knaowledgebase App.""" ;
 
 <https://bio.tools/clean_ngs> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3071,
@@ -137087,7 +128720,7 @@ CKI - Dark Kinase Knaowledgebase App.""" ;
     biotools:primaryContact "Galaxy Support Team" .
 
 <https://bio.tools/clean_reads> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3168,
@@ -137103,7 +128736,7 @@ CKI - Dark Kinase Knaowledgebase App.""" ;
     biotools:primaryContact "Clean_reads team" .
 
 <https://bio.tools/cleanbsequences> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0632,
@@ -137120,7 +128753,7 @@ CKI - Dark Kinase Knaowledgebase App.""" ;
     sc:url "https://cran.r-project.org/web/packages/CleanBSequences/index.html" .
 
 <https://bio.tools/cleaner> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3518 ;
@@ -137138,22 +128771,20 @@ CKI - Dark Kinase Knaowledgebase App.""" ;
 
 <https://bio.tools/cleanex> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2710" ;
-            sc:name "CleanEx dataset code" ;
-            sc:sameAs "http://edamontology.org/data_2710" ],
+            sc:additionalType "http://edamontology.org/data_2709" ;
+            sc:name "CleanEx entry name" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2709" ;
-            sc:name "CleanEx entry name" ;
-            sc:sameAs "http://edamontology.org/data_2709" ] ;
+            sc:additionalType "http://edamontology.org/data_2710" ;
+            sc:name "CleanEx dataset code" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0928" ;
-            sc:name "Gene expression profile" ;
-            sc:sameAs "http://edamontology.org/data_0928" ],
+            sc:additionalType "http://edamontology.org/data_2531" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Experiment report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2531" ;
-            sc:name "Experiment report" ;
-            sc:sameAs "http://edamontology.org/data_2531" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0928" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Gene expression profile" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0623,
         edam:topic_3308 ;
@@ -137170,18 +128801,18 @@ CKI - Dark Kinase Knaowledgebase App.""" ;
 
 <https://bio.tools/cleantranscriptfile> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2305" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2306" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2306" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:citation <https://doi.org/10.1093/nar/gkw343>,
@@ -137198,7 +128829,7 @@ CKI - Dark Kinase Knaowledgebase App.""" ;
     biotools:primaryContact "Galaxy Support Team" .
 
 <https://bio.tools/cleanupdtseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0080 ;
@@ -137219,8 +128850,28 @@ CKI - Dark Kinase Knaowledgebase App.""" ;
         "Lihua Julie Zhu",
         "Sarah Sheppard" .
 
+<https://bio.tools/clearcnv> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Desktop application" ;
+    sc:applicationSubCategory edam:topic_3168,
+        edam:topic_3512,
+        edam:topic_3958 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC418>,
+        "pubmed:35751599" ;
+    sc:description "ClearCNV - CNV analysis in the presence of ambiguity and noise" ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3960,
+        edam:operation_3961 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "clearCNV" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/bihealth/clear-cnv" .
+
 <https://bio.tools/cleaveland4> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0659 ;
@@ -137234,7 +128885,7 @@ CKI - Dark Kinase Knaowledgebase App.""" ;
     biotools:primaryContact "Mike Axtell" .
 
 <https://bio.tools/cleaver> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3510 ;
@@ -137252,7 +128903,7 @@ CKI - Dark Kinase Knaowledgebase App.""" ;
     biotools:primaryContact "Sebastian Gibb" .
 
 <https://bio.tools/cleavpredict> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0821,
         edam:topic_3510,
@@ -137271,7 +128922,7 @@ CKI - Dark Kinase Knaowledgebase App.""" ;
     biotools:primaryContact "Support" .
 
 <https://bio.tools/clep> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3308,
         edam:topic_3474,
@@ -137287,7 +128938,7 @@ CKI - Dark Kinase Knaowledgebase App.""" ;
     sc:url "https://github.com/hybrid-kg/clep" .
 
 <https://bio.tools/clic> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0623,
@@ -137310,7 +128961,7 @@ CKI - Dark Kinase Knaowledgebase App.""" ;
     biotools:primaryContact "Taegyun Yun" .
 
 <https://bio.tools/clic_pathway> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0099,
@@ -137331,7 +128982,7 @@ CKI - Dark Kinase Knaowledgebase App.""" ;
         "Sarah E. Calvo" .
 
 <https://bio.tools/click> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0097,
@@ -137352,7 +129003,7 @@ CKI - Dark Kinase Knaowledgebase App.""" ;
     biotools:primaryContact "Click Support" .
 
 <https://bio.tools/click-exm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0153,
         edam:topic_0154,
@@ -137369,7 +129020,7 @@ CKI - Dark Kinase Knaowledgebase App.""" ;
     sc:url "https://github.com/Yujie-S/Click-ExM_data_process_and_example" .
 
 <https://bio.tools/click2drug> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0121,
@@ -137387,7 +129038,7 @@ CKI - Dark Kinase Knaowledgebase App.""" ;
     biotools:primaryContact "Vincent Zoete" .
 
 <https://bio.tools/clij-assistant> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3383,
@@ -137403,38 +129054,34 @@ CKI - Dark Kinase Knaowledgebase App.""" ;
 
 <https://bio.tools/clima> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2319" ;
-            sc:name "Cell line name (no punctuation)" ;
-            sc:sameAs "http://edamontology.org/data_2319" ],
+            sc:additionalType "http://edamontology.org/data_2317" ;
+            sc:name "Cell line name (exact)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2320" ;
-            sc:name "Cell line name (assonant)" ;
-            sc:sameAs "http://edamontology.org/data_2320" ],
+            sc:additionalType "http://edamontology.org/data_2319" ;
+            sc:name "Cell line name (no punctuation)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2318" ;
-            sc:name "Cell line name (truncated)" ;
-            sc:sameAs "http://edamontology.org/data_2318" ],
+            sc:additionalType "http://edamontology.org/data_2320" ;
+            sc:name "Cell line name (assonant)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2317" ;
-            sc:name "Cell line name (exact)" ;
-            sc:sameAs "http://edamontology.org/data_2317" ] ;
+            sc:additionalType "http://edamontology.org/data_2318" ;
+            sc:name "Cell line name (truncated)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0963" ;
-            sc:name "Cell line report" ;
-            sc:sameAs "http://edamontology.org/data_0963" ],
+            sc:additionalType "http://edamontology.org/data_0963" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Cell line report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0963" ;
-            sc:name "Cell line report" ;
-            sc:sameAs "http://edamontology.org/data_0963" ],
+            sc:additionalType "http://edamontology.org/data_0963" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Cell line report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0963" ;
-            sc:name "Cell line report" ;
-            sc:sameAs "http://edamontology.org/data_0963" ],
+            sc:additionalType "http://edamontology.org/data_0963" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Cell line report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0963" ;
-            sc:name "Cell line report" ;
-            sc:sameAs "http://edamontology.org/data_0963" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0963" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Cell line report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_2229 ;
     sc:citation <https://doi.org/10.1093/nar/gkn730> ;
@@ -137451,18 +129098,16 @@ CKI - Dark Kinase Knaowledgebase App.""" ;
 
 <https://bio.tools/clima_2> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1691" ;
-            sc:name "Email address" ;
-            sc:sameAs "http://edamontology.org/data_1691" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_2892" ;
+            sc:name "Cell type name" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2892" ;
-            sc:name "Cell type name" ;
-            sc:sameAs "http://edamontology.org/data_2892" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1691" ;
+            sc:name "Email address" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_2815,
@@ -137487,7 +129132,7 @@ CKI - Dark Kinase Knaowledgebase App.""" ;
         "Barbara Parodi" .
 
 <https://bio.tools/clin-ik-links> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0102,
@@ -137498,8 +129143,29 @@ CKI - Dark Kinase Knaowledgebase App.""" ;
     sc:name "CLIN-IK-LINKS" ;
     sc:url "http://keg.act.uji.es/demoCLINIKLINKS/home.html" .
 
+<https://bio.tools/clinehelpr> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_0749,
+        edam:topic_0769,
+        edam:topic_3050,
+        edam:topic_3056 ;
+    sc:citation <https://doi.org/10.1186/S12859-021-04423-X>,
+        "pmcid:PMC8520269",
+        "pubmed:34656096" ;
+    sc:description "ClineHelpR is an R package for genomic cline outlier detection and visualization. ClineHelpR allows you to plot BGC (Bayesian Genomic Cline) output." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_1812,
+        edam:operation_3799,
+        edam:operation_3946 ;
+    sc:license "GPL-3.0" ;
+    sc:name "ClineHelpR" ;
+    sc:softwareHelp <https://github.com/btmartin721/ClineHelpR/blob/master/tutorials/ClineHelpR_tutorial_bgc.ipynb> ;
+    sc:url "https://github.com/btmartin721/ClineHelpR" .
+
 <https://bio.tools/clineplotr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0749,
@@ -137517,7 +129183,7 @@ CKI - Dark Kinase Knaowledgebase App.""" ;
     sc:url "http://github.com/btmartin721/ClinePlotR" .
 
 <https://bio.tools/cling> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
         edam:topic_0659,
@@ -137535,7 +129201,7 @@ Identification and characterization of lncRNAs in cancer with a view to their ap
     sc:url "http://bio-bigdata.hrbmu.edu.cn/cling/" .
 
 <https://bio.tools/clingen-variant-curation-interface> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0219,
@@ -137551,7 +129217,7 @@ Identification and characterization of lncRNAs in cancer with a view to their ap
     biotools:primaryContact "Helio Costa" .
 
 <https://bio.tools/clingen_pathogenicity_calculator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0199,
@@ -137576,7 +129242,7 @@ Identification and characterization of lncRNAs in cancer with a view to their ap
     sc:url "http://calculator.clinicalgenome.org/site/cg-calculator" .
 
 <https://bio.tools/clinica> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application",
         "Workbench" ;
@@ -137605,7 +129271,7 @@ Clinica is command-line driven and written in Python. It uses the Nipype system
     sc:url "http://www.clinica.run" .
 
 <https://bio.tools/clinical-sentences> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0218,
         edam:topic_0602,
@@ -137618,7 +129284,7 @@ Clinica is command-line driven and written in Python. It uses the Nipype system
     sc:url "https://github.com/NLPIE/clinical-sentences" .
 
 <https://bio.tools/clinical_ngs_db> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_3168,
@@ -137639,14 +129305,12 @@ Clinica is command-line driven and written in Python. It uses the Nipype system
 
 <https://bio.tools/clinical_trials_information_mediator> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0968" ;
-            sc:name "Keyword" ;
-            sc:sameAs "http://edamontology.org/data_0968" ] ;
+            sc:additionalType "http://edamontology.org/data_0968" ;
+            sc:name "Keyword" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3558" ;
-            sc:name "Clinical trial report" ;
-            sc:sameAs "http://edamontology.org/data_3558" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3558" ;
+            sc:name "Clinical trial report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_3077 ;
     sc:citation <https://doi.org/10.1016/j.jbi.2016.08.012> ;
@@ -137658,7 +129322,7 @@ Clinica is command-line driven and written in Python. It uses the Nipype system
     biotools:primaryContact "Benjamin Braasch" .
 
 <https://bio.tools/clinicallaboratory> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3374,
@@ -137678,7 +129342,7 @@ Clinica is command-line driven and written in Python. It uses the Nipype system
     biotools:primaryContact "Christopher Naugler" .
 
 <https://bio.tools/clinker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0602,
         edam:topic_0769,
@@ -137703,7 +129367,7 @@ clustermap.js is an interactive, reusable d3 chart designed to visualise homolog
     sc:url "http://github.com/gamcil/clinker" .
 
 <https://bio.tools/clinlabgeneticist> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_3379,
@@ -137721,18 +129385,18 @@ clustermap.js is an interactive, reusable d3 chart designed to visualise homolog
 
 <https://bio.tools/clinotator> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ],
+            sc:additionalType "http://edamontology.org/data_1063" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence identifier" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1063" ;
-            sc:name "Sequence identifier" ;
-            sc:sameAs "http://edamontology.org/data_1063" ] ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Report" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1772" ;
-            sc:name "Score" ;
-            sc:sameAs "http://edamontology.org/data_1772" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1772" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Score" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_3063 ;
@@ -137749,7 +129413,7 @@ clustermap.js is an interactive, reusable d3 chart designed to visualise homolog
     sc:url "https://github.com/rbutleriii/Clinotator" .
 
 <https://bio.tools/clinqc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3168,
         edam:topic_3393 ;
@@ -137767,7 +129431,7 @@ clustermap.js is an interactive, reusable d3 chart designed to visualise homolog
     biotools:primaryContact "Ram Vinay Pandey" .
 
 <https://bio.tools/clinsv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0769,
@@ -137789,7 +129453,7 @@ clustermap.js is an interactive, reusable d3 chart designed to visualise homolog
     sc:url "https://github.com/KCCG/ClinSV" .
 
 <https://bio.tools/clintrajan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:description "Python package for the analysis of trajectories in clinical data" ;
     sc:license "LGPL-2.1" ;
@@ -137797,7 +129461,7 @@ clustermap.js is an interactive, reusable d3 chart designed to visualise homolog
     sc:url "https://github.com/auranic/ClinTrajan" .
 
 <https://bio.tools/clinvar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
@@ -137806,8 +129470,11 @@ clustermap.js is an interactive, reusable d3 chart designed to visualise homolog
         edam:topic_3063,
         edam:topic_3325 ;
     sc:citation <https://doi.org/10.1093/nar/gkt1113>,
+        <https://doi.org/10.1093/nar/gkx1153>,
         "pmcid:PMC3965032",
-        "pubmed:24234437" ;
+        "pmcid:PMC5753237",
+        "pubmed:24234437",
+        "pubmed:29165669" ;
     sc:description "A freely accessible, public archive of reports of relationships among medically important variants and phenotypes hosted by the NCBI. It integrates and cross-references data from multiple databases at NCBI. In addition to dbSNP and dbVar, it depends on MedGen to represent phenotype, Gene to represent genes, and on human RefSeqs to represent the location of sequence variation. Each record represents the submitter, the variation and the phenotype." ;
     sc:featureList edam:operation_0224,
         edam:operation_3197,
@@ -137823,7 +129490,7 @@ clustermap.js is an interactive, reusable d3 chart designed to visualise homolog
     biotools:primaryContact "Donna R. Maglott" .
 
 <https://bio.tools/clip> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0199,
@@ -137849,7 +129516,7 @@ clustermap.js is an interactive, reusable d3 chart designed to visualise homolog
     biotools:primaryContact "Mohamed Uduman" .
 
 <https://bio.tools/clip-cancer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_2640,
@@ -137866,7 +129533,7 @@ clustermap.js is an interactive, reusable d3 chart designed to visualise homolog
     sc:url "https://github.com/wwylab/CliP" .
 
 <https://bio.tools/clipcrop> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199 ;
     sc:citation <https://doi.org/10.1186/1471-2105-12-s14-s7> ;
@@ -137877,7 +129544,7 @@ clustermap.js is an interactive, reusable d3 chart designed to visualise homolog
     biotools:primaryContact "Masao Nagasaki" .
 
 <https://bio.tools/clippda> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0121 ;
@@ -137896,7 +129563,7 @@ clustermap.js is an interactive, reusable d3 chart designed to visualise homolog
     biotools:primaryContact "Stephen Nyangoma" .
 
 <https://bio.tools/clipper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0085 ;
     sc:citation <https://doi.org/10.1093/nar/gks866>,
@@ -137916,7 +129583,7 @@ clustermap.js is an interactive, reusable d3 chart designed to visualise homolog
     biotools:primaryContact "Chiara Romualdi" .
 
 <https://bio.tools/clipper-fdr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
         edam:topic_3169,
@@ -137933,7 +129600,7 @@ A p-value-free method for controlling false discovery rates in high-throughput b
     sc:url "https://github.com/JSB-UCLA/Clipper/" .
 
 <https://bio.tools/clipplotr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0769,
@@ -137953,7 +129620,7 @@ A p-value-free method for controlling false discovery rates in high-throughput b
     sc:url "https://github.com/ulelab/clipplotr" .
 
 <https://bio.tools/clipsms> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0601,
@@ -137973,7 +129640,7 @@ A p-value-free method for controlling false discovery rates in high-throughput b
     sc:url "https://github.com/loolab2020/ClipsMS-Version-1.0.0" .
 
 <https://bio.tools/clipsv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3168,
         edam:topic_3175 ;
@@ -137988,7 +129655,7 @@ A p-value-free method for controlling false discovery rates in high-throughput b
     sc:url "https://github.com/ChongLab/ClipSV" .
 
 <https://bio.tools/clipz> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0659,
@@ -138009,8 +129676,30 @@ A p-value-free method for controlling false discovery rates in high-throughput b
     sc:url "http://www.clipz.unibas.ch" ;
     biotools:primaryContact "Mihaela Zavolan" .
 
+<https://bio.tools/cliquely> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Desktop application",
+        "Workflow" ;
+    sc:applicationSubCategory edam:topic_0602,
+        edam:topic_0623,
+        edam:topic_0820,
+        edam:topic_2229,
+        edam:topic_3293 ;
+    sc:citation <https://doi.org/10.1371/JOURNAL.PONE.0264765>,
+        "pmcid:PMC8893610",
+        "pubmed:35239724" ;
+    sc:description "“Cliquely” is a tool that discovers protein-protein interaction networks by identifying proteins that are functionally linked to each other." ;
+    sc:featureList edam:operation_3094,
+        edam:operation_3432,
+        edam:operation_3900 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "Cliquely" ;
+    sc:operatingSystem "Windows" ;
+    sc:url "https://github.com/NoamAndRoy/Cliquely" .
+
 <https://bio.tools/clir> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0634,
         edam:topic_0769,
@@ -138030,7 +129719,7 @@ CLIR - Collaborative Laboratory Integrated Reports.""" ;
     sc:url "https://clir.mayo.edu/" .
 
 <https://bio.tools/cll-cell-segmentation> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3344,
@@ -138047,7 +129736,7 @@ CLIR - Collaborative Laboratory Integrated Reports.""" ;
     biotools:primaryContact "Emad Mohammed" .
 
 <https://bio.tools/clmDCA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_2269,
@@ -138065,8 +129754,27 @@ COLORS is more effcient than PSICOV, mfDCA and plmDCA.""" ;
     sc:name "clmDCA" ;
     sc:url "http://protein.ict.ac.cn/clmDCA/" .
 
+<https://bio.tools/clmb> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workbench" ;
+    sc:applicationSubCategory edam:topic_0196,
+        edam:topic_0769,
+        edam:topic_3174,
+        edam:topic_3474,
+        edam:topic_3697 ;
+    sc:citation <https://doi.org/10.1101/2021.11.15.468566> ;
+    sc:description "Contrastive Learning framework for Metagenome Binning (CLMB) is a framework for metagenomic binning. The basic idea of the CLMB module is that, since the noise of real dataset is hard to calculate, we add simulated noise to the data and force the training to be robustto them. By effectively tacking the noise in the metagenomics data using the contrastive deep learning framework, it is possible to group pairs of contigs that originate from the same type of bacterial together while dividing contigs from different species to different bins." ;
+    sc:featureList edam:operation_0310,
+        edam:operation_3432,
+        edam:operation_3798,
+        edam:operation_3935 ;
+    sc:license "MIT" ;
+    sc:name "CLMB" ;
+    sc:url "https://github.com/zpf0117b/CLMB/" ;
+    biotools:primaryContact <https://orcid.org/0000-0002-3664-6722> .
+
 <https://bio.tools/clme> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3068,
         edam:topic_3386 ;
@@ -138087,26 +129795,28 @@ Estimation and inference for linear models where some or all of the fixed-effect
     sc:name "CLME" ;
     sc:url "https://CRAN.R-project.org/package=CLME" .
 
-<https://bio.tools/clock> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0654,
-        edam:topic_3295,
-        edam:topic_3518 ;
-    sc:citation <https://doi.org/10.1101/821009> ;
-    sc:description """An epigenetic clock for human skeletal muscle.
-
-Abstract Background Ageing is associated with DNA methylation changes in all human tissues, and epigenetic markers can estimate chronological age based on DNA methylation patterns across tissues. However, the construction of the original pan-tissue epigenetic clock did not include skeletal muscle samples, and hence exhibited a strong deviation between DNA methylation and chronological age in this tissue. Methods To address this, we developed a more accurate, muscle-specific epigenetic clock based on the genome-wide DNA methylation data of 682 skeletal muscle samples from 12 independent datasets (18-89 years old, 22% women, 99% Caucasian), all generated with Illumina HumanMethylation arrays (HM27, HM450 or HMEPIC).
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'MEAT', 'pan-tissue clock', 'muscle clock', 'muscle'""" ;
-    sc:featureList edam:operation_0417,
-        edam:operation_2436,
-        edam:operation_3207 ;
-    sc:name "clock" ;
-    sc:url "https://doi.org/10.1101/821009" .
+<https://bio.tools/clnn-loop> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0204,
+        edam:topic_0621,
+        edam:topic_0634 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC575>,
+        "pubmed:35997565" ;
+    sc:description "A deep learning model to predict CTCF-mediated chromatin loops in the different cell lines and CTCF-binding sites (CBS) pair types." ;
+    sc:featureList edam:operation_0481 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "CLNN-loop" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <http://hwclnn.sdu.edu.cn/CLNN/help/> ;
+    sc:url "http://hwclnn.sdu.edu.cn/" .
 
 <https://bio.tools/clogitrv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3305,
@@ -138121,14 +129831,14 @@ Abstract Background Ageing is associated with DNA methylation changes in all hum
 
 <https://bio.tools/clomial> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ] ;
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Sequence variations" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1622" ;
-            sc:name "Disease report" ;
-            sc:sameAs "http://edamontology.org/data_1622" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1622" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Disease report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2269,
@@ -138151,7 +129861,7 @@ Abstract Background Ageing is associated with DNA methylation changes in all hum
     biotools:primaryContact <http://orcid.org/0000-0001-5902-6238> .
 
 <https://bio.tools/clonalframeml> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0080,
         edam:topic_0084,
@@ -138169,18 +129879,18 @@ Abstract Background Ageing is associated with DNA methylation changes in all hum
 
 <https://bio.tools/clonality> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ] ;
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Sequence variations" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ],
+            sc:additionalType "http://edamontology.org/data_1622" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Disease report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1622" ;
-            sc:name "Disease report" ;
-            sc:sameAs "http://edamontology.org/data_1622" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2269,
@@ -138200,7 +129910,7 @@ Abstract Background Ageing is associated with DNA methylation changes in all hum
     biotools:primaryContact "Irina Ostrovnaya" .
 
 <https://bio.tools/clonalorigin> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654 ;
@@ -138217,7 +129927,7 @@ Abstract Background Ageing is associated with DNA methylation changes in all hum
     sc:url "http://code.google.com/p/clonalorigin/" .
 
 <https://bio.tools/clonarch> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0199,
         edam:topic_2640,
@@ -138231,7 +129941,7 @@ Abstract Background Ageing is associated with DNA methylation changes in all hum
     sc:url "https://github.com/elkebir-group/ClonArch" .
 
 <https://bio.tools/clone> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0749,
         edam:topic_3341,
@@ -138252,7 +129962,7 @@ CLoNe is a clustering algorithm with highly general applicability. Based on the
     sc:url "http://www.epfl.ch/labs/lbm/resources" .
 
 <https://bio.tools/clone_mapper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0102 ;
@@ -138268,7 +129978,7 @@ CLoNe is a clustering algorithm with highly general applicability. Based on the
     sc:url "http://bioinformatics.lif.univ-mrs.fr/RNAiMap/" .
 
 <https://bio.tools/clonocalc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0804,
@@ -138288,7 +129998,7 @@ CLoNe is a clustering algorithm with highly general applicability. Based on the
     biotools:primaryContact "Anke Fähnrich" .
 
 <https://bio.tools/clonomatch> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2229,
         edam:topic_2830,
@@ -138312,7 +130022,7 @@ Single Clonotype Search Search Multiple Clonotypes From File.""" ;
     sc:url "https://github.com/crowelab/clonomatch" .
 
 <https://bio.tools/clonotyper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -138330,26 +130040,31 @@ Single Clonotype Search Search Multiple Clonotypes From File.""" ;
     sc:url "http://bioconductor.org/packages/release/bioc/html/clonotypeR.html" ;
     biotools:primaryContact "Charles Plessy" .
 
-<https://bio.tools/closed-loop> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0749,
-        edam:topic_3304,
-        edam:topic_3384 ;
-    sc:citation <https://doi.org/10.1101/834713> ;
-    sc:description """A framework for closed-loop neurofeedback for real-time EEG decoding.
-
-Framework for building a closed loop neurofeedback system.
-
-Closed-Loop EEG Neurofeedback System.
-
-The system requires images for the visual paradigm (see Stimuli). The recorded EEG data will be saved in the \\ClosedLoop\\subjectsData folder (see “Saving data”).
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'neurofeedback', 'EEG', 'scalp', 'decoding'""" ;
-    sc:featureList edam:operation_3799 ;
-    sc:name "closed-loop" ;
-    sc:url "https://github.com/gretatuckute/ClosedLoop/" .
+<https://bio.tools/cloops2> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_0204,
+        edam:topic_0749,
+        edam:topic_3169,
+        edam:topic_3315 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAB1233>,
+        "pmcid:PMC8754654",
+        "pubmed:34928392" ;
+    sc:description "cLoops2: full stack analysis tool for chromatin interactions." ;
+    sc:featureList edam:operation_2939,
+        edam:operation_3436,
+        edam:operation_3799 ;
+    sc:isAccessibleForFree true ;
+    sc:license "BSD-3-Clause" ;
+    sc:name "cLoops2" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/KejiZhaoLab/cLoops2" .
 
 <https://bio.tools/closedloop> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0749,
@@ -138362,7 +130077,7 @@ The system requires images for the visual paradigm (see Stimuli). The recorded E
     sc:url "https://github.com/gretatuckute/ClosedLoop/" .
 
 <https://bio.tools/closes> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3304,
         edam:topic_3334,
         edam:topic_3360,
@@ -138376,7 +130091,7 @@ Targeted interrogation of brain networks through invasive brain stimulation has
     sc:url "https://github.com/Center-For-Neurotechnology/CLoSES-SEM" .
 
 <https://bio.tools/clotbase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0199,
@@ -138397,7 +130112,7 @@ Targeted interrogation of brain networks through invasive brain stimulation has
     biotools:primaryContact "ClotBase Support" .
 
 <https://bio.tools/cloud3dqsar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0202,
         edam:topic_3336,
@@ -138414,7 +130129,7 @@ The Cloud 3D-QSAR Server is developed to help running 3D-QSAR jobs by submitting
     sc:url "http://chemyang.ccnu.edu.cn/ccb/server/cloud3dQSAR/" .
 
 <https://bio.tools/cloudSPAdes> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3168,
@@ -138430,7 +130145,7 @@ The Cloud 3D-QSAR Server is developed to help running 3D-QSAR jobs by submitting
     sc:url "http://cab.spbu.ru/software/spades/" .
 
 <https://bio.tools/cloudaligner> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102 ;
     sc:citation "pubmed:21645377" ;
@@ -138444,7 +130159,7 @@ The Cloud 3D-QSAR Server is developed to help running 3D-QSAR jobs by submitting
     biotools:primaryContact "Nguyen T" .
 
 <https://bio.tools/cloudasm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_0769,
         edam:topic_2885,
@@ -138471,7 +130186,7 @@ To be able use CloudASM, you need to create an account on https://cloud.google.c
     sc:url "https://console.cloud.google.com/storage/browser/cloudasm" .
 
 <https://bio.tools/cloudbridge> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3316,
@@ -138490,7 +130205,7 @@ To be able use CloudASM, you need to create an account on https://cloud.google.c
     sc:url "https://github.com/gvlproject/cloudbridge" .
 
 <https://bio.tools/cloudburst> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3577 ;
@@ -138506,7 +130221,7 @@ To be able use CloudASM, you need to create an account on https://cloud.google.c
     biotools:primaryContact "Schatz MC" .
 
 <https://bio.tools/cloudreg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_3304,
         edam:topic_3444,
@@ -138522,7 +130237,7 @@ To be able use CloudASM, you need to create an account on https://cloud.google.c
     sc:url "https://cloudreg.neurodata.io" .
 
 <https://bio.tools/clover> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0654,
         edam:topic_3168 ;
@@ -138539,8 +130254,23 @@ Clover is a clustering-oriented de novo assembler for Illumina sequences, which
     sc:name "Clover" ;
     sc:url "https://oz.nthu.edu.tw/~d9562563/src.html" .
 
+<https://bio.tools/clover_cluster> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Library" ;
+    sc:applicationSubCategory edam:topic_0654 ;
+    sc:citation <https://doi.org/10.1093/BIB/BBAC336>,
+        "pubmed:35975958" ;
+    sc:description "An Efficient DNA Clustering algorithm based on Tree Structure." ;
+    sc:featureList edam:operation_2422,
+        edam:operation_3432 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "Clover" ;
+    sc:url "https://github.com/Guanjinqu/Clover" .
+
 <https://bio.tools/clpred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2828,
@@ -138552,8 +130282,20 @@ Clover is a clustering-oriented de novo assembler for Illumina sequences, which
     sc:name "CLPred" ;
     sc:url "https://github.com/xuanwenjing/CLPred" .
 
+<https://bio.tools/clr-rnf> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_3382 ;
+    sc:citation <https://doi.org/10.1109/TNNLS.2022.3156047>,
+        "pubmed:35294359" ;
+    sc:description "Pruning Networks With Cross-Layer Ranking & k-Reciprocal Nearest Filters." ;
+    sc:featureList edam:operation_3695 ;
+    sc:license "Not licensed" ;
+    sc:name "CLR-RNF" ;
+    sc:url "https://github.com/lmbxmu/CLR-RNF" .
+
 <https://bio.tools/clrs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3382,
         edam:topic_3474,
         edam:topic_3810 ;
@@ -138571,7 +130313,7 @@ The proposed CLRS data set consists of 15,000 remote sensing images divided into
     sc:url "https://github.com/lehaifeng/CLRS" .
 
 <https://bio.tools/clst> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0080 ;
@@ -138590,7 +130332,7 @@ The proposed CLRS data set consists of 15,000 remote sensing images divided into
     biotools:primaryContact "Noah Hoffman" .
 
 <https://bio.tools/clstutils> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0637 ;
@@ -138608,7 +130350,7 @@ The proposed CLRS data set consists of 15,000 remote sensing images divided into
     biotools:primaryContact "Noah Hoffman" .
 
 <https://bio.tools/clue> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0632,
         edam:topic_0769,
         edam:topic_3168,
@@ -138625,7 +130367,7 @@ Choose the library format of your file.""" ;
     sc:url "http://www.crispr-clue.de" .
 
 <https://bio.tools/clue-kinetics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3068,
         edam:topic_3570 ;
@@ -138638,7 +130380,7 @@ Choose the library format of your file.""" ;
     sc:url "https://github.com/pogudingleb/CLUE" .
 
 <https://bio.tools/clumpak> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3056 ;
     sc:citation <https://doi.org/10.1111/1755-0998.12387> ;
@@ -138653,7 +130395,7 @@ Choose the library format of your file.""" ;
     sc:url "http://clumpak.tau.ac.il/" .
 
 <https://bio.tools/clusem> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3398,
         edam:topic_3474,
@@ -138666,7 +130408,7 @@ Choose the library format of your file.""" ;
     sc:url "https://github.com/MdOchiuddinMiah/MI-BCI_ML" .
 
 <https://bio.tools/cluspro> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0123,
@@ -138692,7 +130434,7 @@ Choose the library format of your file.""" ;
     biotools:primaryContact "Contact form" .
 
 <https://bio.tools/clustage> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0622,
@@ -138711,14 +130453,14 @@ Choose the library format of your file.""" ;
 
 <https://bio.tools/clustal2> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -138746,14 +130488,14 @@ Names occassionally spelled also as Clustal W2, ClustalW2, ClustalW, ClustalX, C
 
 <https://bio.tools/clustal_ws_jabaws> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btr304> ;
@@ -138770,14 +130512,14 @@ Names occassionally spelled also as Clustal W2, ClustalW2, ClustalW, ClustalX, C
 
 <https://bio.tools/clustalo> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0080 ;
@@ -138804,19 +130546,20 @@ Names occassionally spelled also as Clustal W2, ClustalW2, ClustalW, ClustalX, C
 
 <https://bio.tools/clustalo_ebi> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:author "Des Higgins",
-        "Web Production" ;
-    sc:citation <https://doi.org/10.1002/0471250953.bi0313s48> ;
+        "Job Dispatcher" ;
+    sc:citation <https://doi.org/10.1002/0471250953.bi0313s48>,
+        <https://doi.org/10.1093/nar/gkac240> ;
     sc:description "Multiple sequence alignment using guide trees and HMM profile-profile techniques." ;
     sc:featureList edam:operation_0492 ;
     sc:name "Clustal Omega (EBI)" ;
@@ -138829,18 +130572,18 @@ Names occassionally spelled also as Clustal W2, ClustalW2, ClustalW, ClustalX, C
         <http://www.ebi.ac.uk/about/terms-of-use> ;
     sc:softwareVersion "1" ;
     sc:url "http://www.ebi.ac.uk/Tools/msa/clustalo/" ;
-    biotools:primaryContact "Web Production" .
+    biotools:primaryContact "Job Dispatcher Team" .
 
 <https://bio.tools/clustalo_uniprot> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:description "Align two or more protein sequences on the UniProt web site using ClustalOmega." ;
@@ -138854,14 +130597,14 @@ Names occassionally spelled also as Clustal W2, ClustalW2, ClustalW, ClustalX, C
 
 <https://bio.tools/clustalo_ws_jabaws> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btr304> ;
@@ -138878,14 +130621,14 @@ Names occassionally spelled also as Clustal W2, ClustalW2, ClustalW, ClustalX, C
 
 <https://bio.tools/clustalw> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080 ;
@@ -138909,14 +130652,12 @@ Names occassionally spelled also as Clustal W2, ClustalW2, ClustalW, ClustalX, C
 
 <https://bio.tools/clustalw2_ebi> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:name "Sequence alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:author "Des Higgins",
@@ -138938,14 +130679,12 @@ Names occassionally spelled also as Clustal W2, ClustalW2, ClustalW, ClustalX, C
 
 <https://bio.tools/clustalw2_phylogeny_ebi> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:name "Sequence alignment" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0872" ;
-            sc:name "Phylogenetic tree" ;
-            sc:sameAs "http://edamontology.org/data_0872" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0872" ;
+            sc:name "Phylogenetic tree" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3293 ;
     sc:author "Des Higgins",
@@ -138967,14 +130706,14 @@ Names occassionally spelled also as Clustal W2, ClustalW2, ClustalW, ClustalX, C
 
 <https://bio.tools/clustalw_biolib> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1949" ;
+            sc:name "Sequence alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Bioinformatics portal",
         "Command-line tool",
         "Web API",
@@ -138996,14 +130735,14 @@ Names occassionally spelled also as Clustal W2, ClustalW2, ClustalW, ClustalX, C
 
 <https://bio.tools/clustalw_pbil> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:description "ClustalW is a general purpose multiple sequence alignment program for DNA or proteins" ;
@@ -139016,30 +130755,8 @@ Names occassionally spelled also as Clustal W2, ClustalW2, ClustalW, ClustalX, C
     sc:url "http://npsa-pbil.ibcp.fr/cgi-bin/npsa_automat.pl?page=npsa_clustalw.html" ;
     biotools:primaryContact "Gilbert Deleage" .
 
-<https://bio.tools/clustalw_sib> a sc:SoftwareApplication ;
-    bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
-    bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
-    sc:additionalType "Web application" ;
-    sc:applicationSubCategory edam:topic_0080 ;
-    sc:description "Multiple alignment of nucleic acid and protein sequences." ;
-    sc:featureList edam:operation_0492 ;
-    sc:name "ClustalW (SIB)" ;
-    sc:operatingSystem "Linux",
-        "Mac",
-        "Windows" ;
-    sc:softwareHelp <https://embnet.vital-it.ch/software/ClustalW_help.html> ;
-    sc:url "http://embnet.vital-it.ch/software/ClustalW.html" ;
-    biotools:primaryContact "Vital-IT Support" .
-
 <https://bio.tools/clustcomp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3321 ;
@@ -139057,7 +130774,7 @@ Names occassionally spelled also as Clustal W2, ClustalW2, ClustalW, ClustalX, C
     biotools:primaryContact "Aurora Torrente" .
 
 <https://bio.tools/clustcr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0154,
@@ -139072,38 +130789,28 @@ Names occassionally spelled also as Clustal W2, ClustalW2, ClustalW, ClustalX, C
     sc:url "https://github.com/svalkiers/clustcr" ;
     biotools:primaryContact <https://orcid.org/0000-0001-5903-633X> .
 
-<https://bio.tools/clusterProfile> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0203,
-        edam:topic_0602,
-        edam:topic_0659 ;
-    sc:citation <https://doi.org/10.3892/MMR.2019.10538>,
-        "pmcid:PMC6755151",
-        "pubmed:31432119" ;
-    sc:description "> LOW CONFIDENCE! | > COMMON LINK WITH (PUB. & NAME DIFFERENT) bio.tools/clusterprofiler (BIOCONDUCTOR.ORG/packages/release/bioc/html/clusterProfiler.html) | > CORRECT NAME OF TOOL COULD ALSO BE 'pheatmap' (bio.tools/pheatmap), 'limma' (bio.tools/limma), 'injury treadmill', 'treadmill' | MAP‑1B, PACS‑2 and AHCYL1 are regulated by miR‑34A/B/C and miR‑449 in neuroplasticity following traumatic spinal cord injury in rats | statistical analysis and visualization of functional profiles for genes and gene clusters | This package implements methods to analyze and visualize functional profiles (GO and KEGG) of gene and gene clusters | Annotation, Clustering, GO, GeneSetEnrichment, KEGG, MultipleComparison, Pathways, Reactome, Software, Visualization" ;
-    sc:featureList edam:operation_0277,
-        edam:operation_0313,
-        edam:operation_3439 ;
-    sc:license "Artistic-2.0" ;
-    sc:name "clusterProfile" ;
-    sc:url "http://bioconductor.org/packages/release/bioc/html/clusterProfiler.html" .
-
-<https://bio.tools/clusterProfiler_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0203,
-        edam:topic_0602,
-        edam:topic_2830 ;
-    sc:citation <https://doi.org/10.3892/OL.2019.10545>,
-        "pmcid:PMC6676656",
-        "pubmed:31452735" ;
-    sc:description "> VERY_LOW CONFIDENCE! | > NAME EQUAL TO (PUB. DIFFERENT) bio.tools/clusterprofiler | > COMMON LINK WITH (PUB. & NAME DIFFERENT) bio.tools/clusterprofiler (BIOCONDUCTOR.ORG/packages/release/bioc/html/clusterProfiler.html) | > CORRECT NAME OF TOOL COULD ALSO BE 'HTR1D TIMP1 SERPINE1 MMP3 CNR2', 'TIMP1 SERPINE1 MMP3 CNR2', 'HTR1D TIMP1 SERPINE1 MMP3', 'HTR1D TIMP1 SERPINE1' | HTR1D, TIMP1, SERPINE1, MMP3 and CNR2 affect the survival of patients with colon adenocarcinoma | statistical analysis and visualization of functional profiles for genes and gene clusters | This package implements methods to analyze and visualize functional profiles (GO and KEGG) of gene and gene clusters | Annotation, Clustering, GO, GeneSetEnrichment, KEGG, MultipleComparison, Pathways, Reactome, Software, Visualization" ;
-    sc:featureList edam:operation_0313,
-        edam:operation_0533,
-        edam:operation_3501 ;
-    sc:license "Artistic-2.0" ;
-    sc:name "clusterProfiler_autogenerated" ;
-    sc:url "http://www.bioconductor.org/packages/release/bioc/html/clusterProfiler.html" .
+<https://bio.tools/cluster-tracker> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_3293,
+        edam:topic_3305 ;
+    sc:citation <https://doi.org/10.1093/VE/VEAC048>,
+        "pmcid:PMC9214145",
+        "pubmed:35769891" ;
+    sc:description "A interactive web-based tool to facilitate effective and intuitive SARS-CoV-2 geographic data exploration and visualization across the USA." ;
+    sc:featureList edam:operation_3431,
+        edam:operation_3432,
+        edam:operation_3478 ;
+    sc:license "Not licensed" ;
+    sc:name "Cluster-Tracker" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://clustertracker.gi.ucsc.edu/" .
 
 <https://bio.tools/cluster_buster> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0160,
@@ -139126,7 +130833,7 @@ Names occassionally spelled also as Clustal W2, ClustalW2, ClustalW, ClustalX, C
     biotools:primaryContact "Martin Frith" .
 
 <https://bio.tools/cluster_flow> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0769,
@@ -139144,7 +130851,7 @@ Names occassionally spelled also as Clustal W2, ClustalW2, ClustalW, ClustalX, C
     biotools:primaryContact "PHIL EWELS Contact Form" .
 
 <https://bio.tools/clusterdna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0654,
@@ -139165,7 +130872,7 @@ Names occassionally spelled also as Clustal W2, ClustalW2, ClustalW, ClustalX, C
     biotools:primaryContact "Tung Hoang" .
 
 <https://bio.tools/clusterexperiment> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3168 ;
@@ -139184,7 +130891,7 @@ Names occassionally spelled also as Clustal W2, ClustalW2, ClustalW, ClustalX, C
     biotools:primaryContact "Elizabeth Purdom" .
 
 <https://bio.tools/clusterflow> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0091,
@@ -139203,7 +130910,7 @@ Names occassionally spelled also as Clustal W2, ClustalW2, ClustalW, ClustalX, C
     biotools:primaryContact "Phil Ewels" .
 
 <https://bio.tools/clustergrammer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0099,
@@ -139221,7 +130928,7 @@ Names occassionally spelled also as Clustal W2, ClustalW2, ClustalW, ClustalX, C
     biotools:primaryContact "Avi Ma’ayan" .
 
 <https://bio.tools/clustering-matlab-ga-toolbox> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3315,
         edam:topic_3520 ;
@@ -139238,14 +130945,14 @@ Names occassionally spelled also as Clustal W2, ClustalW2, ClustalW, ClustalX, C
 
 <https://bio.tools/clustering_resume> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:citation <https://doi.org/10.1093/nar/gkw343>,
@@ -139261,7 +130968,7 @@ Names occassionally spelled also as Clustal W2, ClustalW2, ClustalW, ClustalX, C
     biotools:primaryContact "Galaxy Support Team" .
 
 <https://bio.tools/clusteringsuite> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_2269 ;
     sc:description "The ClusteringSuite is the software package that includes the cluster analysis tool." ;
@@ -139272,42 +130979,42 @@ Names occassionally spelled also as Clustal W2, ClustalW2, ClustalW, ClustalX, C
 
 <https://bio.tools/clusterizebyslidingwindows> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
+            sc:name "Sequence trace" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1975" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_3003" ;
+            sc:name "Annotation track" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2306" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2305" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1975" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Image" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3168 ;
@@ -139325,7 +131032,7 @@ Names occassionally spelled also as Clustal W2, ClustalW2, ClustalW, ClustalX, C
     biotools:primaryContact "Galaxy Support Team" .
 
 <https://bio.tools/clusterjudge> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2269 ;
@@ -139343,7 +131050,7 @@ Names occassionally spelled also as Clustal W2, ClustalW2, ClustalW, ClustalX, C
     biotools:primaryContact "Adrian Pasculescu" .
 
 <https://bio.tools/clusterm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0128,
         edam:topic_0160,
@@ -139363,7 +131070,7 @@ Source Code and Supplementary Materials for ClusterM.
     sc:url "http://www.ece.tamu.edu/~xqian/ClusterM/" .
 
 <https://bio.tools/clustermine> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2229,
         edam:topic_3277 ;
@@ -139379,7 +131086,7 @@ ClusterMine is a knowledge-integrated clustering approach to cluster samples bas
     sc:url "http://www.genemine.org/clustermine.php" .
 
 <https://bio.tools/clustermq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3068,
         edam:topic_3173,
@@ -139400,22 +131107,22 @@ ClusterMine is a knowledge-integrated clustering approach to cluster samples bas
 
 <https://bio.tools/clusterprofiler> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1027" ;
-            sc:name "Gene ID (NCBI)" ;
-            sc:sameAs "http://edamontology.org/data_1027" ] ;
+            sc:additionalType "http://edamontology.org/data_1027" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Gene ID (NCBI)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ],
+            sc:additionalType "http://edamontology.org/data_0862" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Dotplot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1669" ;
-            sc:name "P-value" ;
-            sc:sameAs "http://edamontology.org/data_1669" ],
+            sc:additionalType "http://edamontology.org/data_1669" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "P-value" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0862" ;
-            sc:name "Dotplot" ;
-            sc:sameAs "http://edamontology.org/data_0862" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -139438,7 +131145,7 @@ ClusterMine is a knowledge-integrated clustering approach to cluster samples bas
     biotools:primaryContact <http://orcid.org/0000-0002-6485-8781> .
 
 <https://bio.tools/clusterseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3168 ;
@@ -139458,8 +131165,29 @@ ClusterMine is a knowledge-integrated clustering approach to cluster samples bas
     sc:url "http://bioconductor.org/packages/release/bioc/html/clusterSeq.html" ;
     biotools:primaryContact "Thomas J. Hardcastle" .
 
+<https://bio.tools/clustersheep> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0080,
+        edam:topic_0121,
+        edam:topic_0154,
+        edam:topic_3520 ;
+    sc:author "Paul Ka Po To" ;
+    sc:citation <https://doi.org/10.1021/ACS.JPROTEOME.1C00485>,
+        <https://doi.org/10.14711/thesis-991012551465103412>,
+        "pubmed:34734728" ;
+    sc:description "ClusterSheep is a GPU/CUDA-accelerated software tool for large-scale clustering of tandem mass spectra from shotgun proteomics." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3432,
+        edam:operation_3801 ;
+    sc:isAccessibleForFree true ;
+    sc:license "LGPL-3.0" ;
+    sc:name "ClusterSheep" ;
+    sc:url "https://github.com/kpto/ClusterSheep" ;
+    biotools:primaryContact <https://orcid.org/0000-0001-7928-0364> .
+
 <https://bio.tools/clustersignificance> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0623 ;
@@ -139478,7 +131206,7 @@ ClusterMine is a knowledge-integrated clustering approach to cluster samples bas
     biotools:primaryContact "Jason T Serviss" .
 
 <https://bio.tools/clusterstab> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3518 ;
@@ -139496,7 +131224,7 @@ ClusterMine is a knowledge-integrated clustering approach to cluster samples bas
     biotools:primaryContact "James W. MacDonald" .
 
 <https://bio.tools/clusterv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3372 ;
@@ -139514,22 +131242,20 @@ ClusterMine is a knowledge-integrated clustering approach to cluster samples bas
 
 <https://bio.tools/clusteval> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2730" ;
-            sc:name "COGEME unisequence ID" ;
-            sc:sameAs "http://edamontology.org/data_2730" ],
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:name "Gene expression data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1413" ;
-            sc:name "Sequence similarity" ;
-            sc:sameAs "http://edamontology.org/data_1413" ],
+            sc:additionalType "http://edamontology.org/data_2730" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "COGEME unisequence ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Gene expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ] ;
+            sc:additionalType "http://edamontology.org/data_1413" ;
+            sc:name "Sequence similarity" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1772" ;
-            sc:name "Score" ;
-            sc:sameAs "http://edamontology.org/data_1772" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1772" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Score" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_2259,
@@ -139554,7 +131280,7 @@ ClusterMine is a knowledge-integrated clustering approach to cluster samples bas
         <http://orcid.org/0000-0002-0282-0462> .
 
 <https://bio.tools/clustifyr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0099,
@@ -139576,7 +131302,7 @@ clustifyr classifies cells and clusters in single-cell RNA sequencing experiment
     sc:url "https://rnabioco.github.io/clustifyr/" .
 
 <https://bio.tools/clustlasso> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:description "An R package to build predictive genomic signatures of microbial phenotypes" ;
     sc:featureList edam:operation_3482 ;
@@ -139586,7 +131312,7 @@ clustifyr classifies cells and clusters in single-cell RNA sequencing experiment
     sc:url "https://gitlab.com/biomerieux-data-science/clustlasso" .
 
 <https://bio.tools/clustom-cloud> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0219,
@@ -139607,7 +131333,7 @@ clustifyr classifies cells and clusters in single-cell RNA sequencing experiment
         "Kyung Mo Kim" .
 
 <https://bio.tools/clustomics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_0659,
         edam:topic_0769,
@@ -139623,7 +131349,7 @@ clustifyr classifies cells and clusters in single-cell RNA sequencing experiment
     sc:url "https://github.com/galadrielbriere/ClustOmics" .
 
 <https://bio.tools/clustperturb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0602,
         edam:topic_3168 ;
@@ -139638,8 +131364,30 @@ clust.perturb is an R package designed to test the robustness of graph-based clu
     sc:name "clust.perturb" ;
     sc:url "https://rstacey.shinyapps.io/clust-perturb-tool/" .
 
+<https://bio.tools/clustrast> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0196,
+        edam:topic_0621,
+        edam:topic_3170,
+        edam:topic_3308,
+        edam:topic_3320 ;
+    sc:citation <https://doi.org/10.1101/2022.01.02.473666> ;
+    sc:description "A cluster-guided short read de novo transcriptome assembly pipeline." ;
+    sc:featureList edam:operation_0524,
+        edam:operation_3198,
+        edam:operation_3258,
+        edam:operation_3472 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "ClusTrast" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/karljohanw/clustrast" .
+
 <https://bio.tools/clustrat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0625,
         edam:topic_2885,
@@ -139660,7 +131408,7 @@ Genome-wide association studies (GWAS) have been extensively used to estimate th
     sc:url "https://github.com/aritra90/CluStrat" .
 
 <https://bio.tools/clustrviz> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3315,
         edam:topic_3382 ;
     sc:citation <https://doi.org/10.1080/10618600.2019.1629943>,
@@ -139680,26 +131428,26 @@ Note that RcppEigen (which clustRviz internally) triggers many compiler warnings
 
 <https://bio.tools/clustvis> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3113" ;
-            sc:name "Sample annotation" ;
-            sc:sameAs "http://edamontology.org/data_3113" ],
+            sc:additionalType "http://edamontology.org/data_0928" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Gene expression profile" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0928" ;
-            sc:name "Gene expression profile" ;
-            sc:sameAs "http://edamontology.org/data_0928" ],
+            sc:additionalType "http://edamontology.org/data_3111" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Processed microarray data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3111" ;
-            sc:name "Processed microarray data" ;
-            sc:sameAs "http://edamontology.org/data_3111" ] ;
+            sc:additionalType "http://edamontology.org/data_3113" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Sample annotation" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ],
+            sc:additionalType "http://edamontology.org/data_1636" ;
+            sc:encodingFormat "http://edamontology.org/format_3604" ;
+            sc:name "Heat map" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1636" ;
-            sc:name "Heat map" ;
-            sc:sameAs "http://edamontology.org/data_1636" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3604" ;
+            sc:name "Image" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_2269 ;
@@ -139723,7 +131471,7 @@ Note that RcppEigen (which clustRviz internally) triggers many compiler warnings
     biotools:primaryContact "Tauno Metsalu" .
 
 <https://bio.tools/cma> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3518 ;
@@ -139741,8 +131489,32 @@ Note that RcppEigen (which clustRviz internally) triggers many compiler warnings
     sc:url "http://bioconductor.org/packages/release/bioc/html/CMA.html" ;
     biotools:primaryContact "Christoph Bernau" .
 
+<https://bio.tools/cmatch> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0196,
+        edam:topic_0602,
+        edam:topic_3168,
+        edam:topic_3474,
+        edam:topic_3895 ;
+    sc:citation <https://doi.org/10.3389/FBIOE.2021.785131>,
+        "pmcid:PMC8784771",
+        "pubmed:35083201" ;
+    sc:description "cMatch is a simple, lightweight tool to perform quality control of modular synthetic constructs at speed and scale" ;
+    sc:featureList edam:operation_0310,
+        edam:operation_0495,
+        edam:operation_3180,
+        edam:operation_3196 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "cMatch" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/kitneylab/cmatch" .
+
 <https://bio.tools/cmbd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2640,
@@ -139761,7 +131533,7 @@ Note that RcppEigen (which clustRviz internally) triggers many compiler warnings
     biotools:primaryContact <https://orcid.org/0000-0003-2899-1531> .
 
 <https://bio.tools/cmc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0099,
@@ -139782,7 +131554,7 @@ Note that RcppEigen (which clustRviz internally) triggers many compiler warnings
     sc:url "http://fantom.gsc.riken.jp/software/" .
 
 <https://bio.tools/cmcompare> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0602,
@@ -139805,7 +131577,7 @@ Note that RcppEigen (which clustRviz internally) triggers many compiler warnings
     biotools:primaryContact "CMCompare Support" .
 
 <https://bio.tools/cmcrpred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0203,
         edam:topic_0602,
@@ -139825,14 +131597,13 @@ CMcrpred:Risk prediction in cutaneous melanoma patients using clinical featurs""
 
 <https://bio.tools/cmd> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0957" ;
-            sc:name "Database metadata" ;
-            sc:sameAs "http://edamontology.org/data_0957" ] ;
+            sc:additionalType "http://edamontology.org/data_0957" ;
+            sc:name "Database metadata" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Sequence variations" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0634 ;
     sc:citation <https://doi.org/10.1002/humu.21438> ;
@@ -139843,8 +131614,47 @@ CMcrpred:Risk prediction in cutaneous melanoma patients using clinical featurs""
     sc:softwareHelp <https://eds.gene.le.ac.uk/docs/index.php> ;
     sc:url "https://eds.gene.le.ac.uk" .
 
+<https://bio.tools/cmdb> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0199,
+        edam:topic_3342,
+        edam:topic_3577,
+        edam:topic_3673,
+        edam:topic_3796 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAC638>,
+        "pubmed:35871305" ;
+    sc:description "Chinese Millionome Database (CMDB), a database that contains 9.04 million single nucleotide variants (SNV) with allele frequency information derived from low-coverage (0.06×–0.1×) whole-genome sequencing (WGS) data of 141 431 unrelated healthy Chinese individuals." ;
+    sc:featureList edam:operation_2421,
+        edam:operation_3196,
+        edam:operation_3227 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Other" ;
+    sc:name "CMDB" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://db.cngb.org/cmdb/" .
+
+<https://bio.tools/cmdsr> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workbench" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_3382,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1109/TIP.2022.3176526>,
+        "pubmed:35635814" ;
+    sc:description "CMDSR is a novel conditional meta-network framework which helps the SR framework learn how to adapt to changes in the degradation distribution of input." ;
+    sc:featureList edam:operation_3443,
+        edam:operation_3937 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "CMDSR" ;
+    sc:url "https://github.com/guanghaoyin/CMDSR" .
+
 <https://bio.tools/cmeias_color_segmentation> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3277 ;
     sc:citation <https://doi.org/10.1007/s00248-14-0495-1> ;
@@ -139857,7 +131667,7 @@ CMcrpred:Risk prediction in cutaneous melanoma patients using clinical featurs""
     sc:url "http://www.cme.msu.edu/cmeias/color.shtml" .
 
 <https://bio.tools/cmf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654,
@@ -139871,7 +131681,7 @@ CMcrpred:Risk prediction in cutaneous melanoma patients using clinical featurs""
     sc:url "http://www.stat.ucla.edu/~zhou/CMF/index.html" .
 
 <https://bio.tools/cmf-impute> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2229,
         edam:topic_3170,
@@ -139886,8 +131696,25 @@ CMcrpred:Risk prediction in cutaneous melanoma patients using clinical featurs""
     sc:name "CMF-Impute" ;
     sc:url "https://github.com/xujunlin123/CMFImpute.git" .
 
+<https://bio.tools/cmfinder> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0099 ;
+    sc:citation <https://doi.org/10.1093/bioinformatics/btk008>,
+        "pubmed:16357030" ;
+    sc:description "The cmfinder program infers an alignment and consensus secondary structure of an RNA, using unaligned sequences as input." ;
+    sc:featureList edam:operation_0502 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "cmfinder" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://sourceforge.net/projects/weinberg-cmfinder/files/cmfinder-0.4.1.18-user-manual.pdf/download> ;
+    sc:url "https://sourceforge.net/projects/weinberg-cmfinder/" .
+
 <https://bio.tools/cmfmtl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0602,
@@ -139903,7 +131730,7 @@ CMcrpred:Risk prediction in cutaneous melanoma patients using clinical featurs""
     sc:url "https://github.com/LoseHair/CMFMTL" .
 
 <https://bio.tools/cmfsm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3336 ;
     sc:citation <https://doi.org/10.1186/s12859-018-2071-z> ;
@@ -139916,8 +131743,26 @@ CMcrpred:Risk prediction in cutaneous melanoma patients using clinical featurs""
         "Quan Zou",
         "Shaoliang PengEmail author" .
 
+<https://bio.tools/cmic> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_3068,
+        edam:topic_3168 ;
+    sc:citation <https://doi.org/10.1186/S12859-022-04837-1>,
+        "pmcid:PMC9308261",
+        "pubmed:35870880" ;
+    sc:description "An efficient quality score compressor with random access functionality." ;
+    sc:featureList edam:operation_2421,
+        edam:operation_2422,
+        edam:operation_3435 ;
+    sc:license "Apache-2.0" ;
+    sc:name "CMIC" ;
+    sc:operatingSystem "Linux" ;
+    sc:url "https://github.com/Humonex/Cmic" .
+
 <https://bio.tools/cmm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2885,
@@ -139940,7 +131785,7 @@ CMcrpred:Risk prediction in cutaneous melanoma patients using clinical featurs""
     sc:url "https://github.com/HaohanWang/CMM" .
 
 <https://bio.tools/cmnpd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_0780,
         edam:topic_3336,
@@ -139956,8 +131801,31 @@ CMcrpred:Risk prediction in cutaneous melanoma patients using clinical featurs""
     sc:name "CMNPD" ;
     sc:url "https://www.cmnpd.org" .
 
+<https://bio.tools/cmore> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0602,
+        edam:topic_0625,
+        edam:topic_2229,
+        edam:topic_3335,
+        edam:topic_3577 ;
+    sc:citation <https://doi.org/10.1016/J.XCRM.2021.100436>,
+        "pmcid:PMC8606902",
+        "pubmed:34841289" ;
+    sc:description "C-MORE (cellular morphology recognition) is a workflow from bench to data analysis tailored for heterogeneous primary cells using the R package cmoRe." ;
+    sc:featureList edam:operation_3435,
+        edam:operation_3629,
+        edam:operation_3937 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "cmoRe" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/mknoll/cmoRe" .
+
 <https://bio.tools/cmorph> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -139975,14 +131843,13 @@ CMcrpred:Risk prediction in cutaneous melanoma patients using clinical featurs""
 
 <https://bio.tools/cmpi> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2299" ;
-            sc:name "Gene name" ;
-            sc:sameAs "http://edamontology.org/data_2299" ] ;
+            sc:additionalType "http://edamontology.org/data_2299" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Gene name" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1710" ;
-            sc:name "Structure image" ;
-            sc:sameAs "http://edamontology.org/data_1710" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1710" ;
+            sc:name "Structure image" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0602 ;
     sc:citation <https://doi.org/10.1515/jib-2010-148> ;
@@ -139999,7 +131866,7 @@ CMcrpred:Risk prediction in cutaneous melanoma patients using clinical featurs""
     biotools:primaryContact "Bjorn Sommer" .
 
 <https://bio.tools/cmr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0797,
@@ -140016,7 +131883,7 @@ CMcrpred:Risk prediction in cutaneous melanoma patients using clinical featurs""
     biotools:primaryContact "Contact form" .
 
 <https://bio.tools/cms> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3304,
@@ -140034,7 +131901,7 @@ CMcrpred:Risk prediction in cutaneous melanoma patients using clinical featurs""
     sc:url "https://github.com/mytalbot/cms" .
 
 <https://bio.tools/cmsa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0099,
@@ -140051,7 +131918,7 @@ CMcrpred:Risk prediction in cutaneous melanoma patients using clinical featurs""
     biotools:primaryContact "Ce Yu" .
 
 <https://bio.tools/cmscaller> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0203,
@@ -140068,7 +131935,7 @@ CMcrpred:Risk prediction in cutaneous melanoma patients using clinical featurs""
     biotools:primaryContact "Lothe Lab" .
 
 <https://bio.tools/cmttdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3068,
@@ -140083,7 +131950,7 @@ CMcrpred:Risk prediction in cutaneous melanoma patients using clinical featurs""
     sc:url "http://www.biosino.org/CMTTdb" .
 
 <https://bio.tools/cmvdrg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0199,
         edam:topic_0625,
@@ -140099,7 +131966,7 @@ CMcrpred:Risk prediction in cutaneous melanoma patients using clinical featurs""
     sc:url "https://github.com/ucl-pathgenomics/cmvdrg" .
 
 <https://bio.tools/cmweb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0102,
@@ -140123,7 +131990,7 @@ CMcrpred:Risk prediction in cutaneous melanoma patients using clinical featurs""
     biotools:primaryContact "CMWeb support" .
 
 <https://bio.tools/cn3d> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0082,
@@ -140146,7 +132013,7 @@ CMcrpred:Risk prediction in cutaneous melanoma patients using clinical featurs""
     biotools:primaryContact "Stephen H. Bryant" .
 
 <https://bio.tools/cna2subpathway> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -140164,7 +132031,7 @@ CMcrpred:Risk prediction in cutaneous melanoma patients using clinical featurs""
     sc:url "https://github.com/hanjunwei-lab/CNA2Subpathway" .
 
 <https://bio.tools/cna_origin> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3360,
@@ -140180,7 +132047,7 @@ CMcrpred:Risk prediction in cutaneous melanoma patients using clinical featurs""
     sc:url "https://github.com/YingLianghnu/CNA_origin" .
 
 <https://bio.tools/cnadbcc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0203,
@@ -140197,7 +132064,7 @@ CMcrpred:Risk prediction in cutaneous melanoma patients using clinical featurs""
     sc:url "http://cailab.labshare.cn/CNAdbCC/" .
 
 <https://bio.tools/cnahap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_2885,
@@ -140214,7 +132081,7 @@ CMcrpred:Risk prediction in cutaneous melanoma patients using clinical featurs""
     biotools:primaryContact <https://orcid.org/0000-0001-6246-6349> .
 
 <https://bio.tools/cnanalysis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0130,
@@ -140238,7 +132105,7 @@ CMcrpred:Risk prediction in cutaneous melanoma patients using clinical featurs""
     biotools:primaryContact "Support" .
 
 <https://bio.tools/cnanorm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2640,
@@ -140258,7 +132125,7 @@ CMcrpred:Risk prediction in cutaneous melanoma patients using clinical featurs""
     biotools:primaryContact <http://orcid.org/0000-0001-7530-7611> .
 
 <https://bio.tools/cnanova> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2885 ;
     sc:description "CNAnova is a stand-alone software package for identifying recurrent regions of copy number aberrations (CNAs) using SNP microarray data. It runs from the command line on the Linux platforms and is composed of several modules written in the R programming language." ;
@@ -140272,7 +132139,7 @@ CMcrpred:Risk prediction in cutaneous melanoma patients using clinical featurs""
     sc:url "http://www.compbio.group.cam.ac.uk/software/cnanova" .
 
 <https://bio.tools/cnapp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2259,
         edam:topic_2640,
@@ -140288,8 +132155,28 @@ CMcrpred:Risk prediction in cutaneous melanoma patients using clinical featurs""
     sc:name "CNApp" ;
     sc:url "https://tools.idibaps.org/CNApp/" .
 
+<https://bio.tools/cnapy> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Desktop application" ;
+    sc:applicationSubCategory edam:topic_0602,
+        edam:topic_3407,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAB828>,
+        "pmcid:PMC8826044",
+        "pubmed:34878104" ;
+    sc:description "An integrated environment for metabolic network analysis." ;
+    sc:featureList edam:operation_3660,
+        edam:operation_3925 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Apache-2.0" ;
+    sc:name "CNApy" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/cnapy-org/CNApy" .
+
 <https://bio.tools/cnaseg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3053,
@@ -140305,8 +132192,35 @@ CMcrpred:Risk prediction in cutaneous melanoma patients using clinical featurs""
     sc:softwareVersion "1.0" ;
     sc:url "http://www.compbio.group.cam.ac.uk/software/cnaseg" .
 
+<https://bio.tools/cnaviz> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_3112" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Gene expression matrix" ] ;
+    bsc:output [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_3768" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Clustered expression profiles" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0199,
+        edam:topic_0654,
+        edam:topic_2640 ;
+    sc:citation <https://doi.org/10.1101/2022.01.15.476457> ;
+    sc:description "User-guided local and global copy-number segmentation for tumor sequencing data." ;
+    sc:featureList edam:operation_3227,
+        edam:operation_3432 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "CNAViz" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://github.com/elkebir-group/cnaviz/blob/master/docs/Tutorial.md> ;
+    sc:url "https://elkebir-group.github.io/cnaviz/" .
+
 <https://bio.tools/cncdatabase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_0659,
@@ -140322,7 +132236,7 @@ CMcrpred:Risk prediction in cutaneous melanoma patients using clinical featurs""
     sc:url "https://cncdatabase.med.cornell.edu/" .
 
 <https://bio.tools/cncrnadb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web API" ;
     sc:applicationSubCategory edam:topic_0108,
@@ -140340,7 +132254,7 @@ CMcrpred:Risk prediction in cutaneous melanoma patients using clinical featurs""
     sc:url "http://www.rna-society.org/cncrnadb/" .
 
 <https://bio.tools/cncv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3263,
@@ -140355,7 +132269,7 @@ CMcrpred:Risk prediction in cutaneous melanoma patients using clinical featurs""
     sc:url "https://github.com/insilico/cncv" .
 
 <https://bio.tools/cnd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199 ;
     sc:citation "pubmed:20022973" ;
@@ -140366,7 +132280,7 @@ CMcrpred:Risk prediction in cutaneous melanoma patients using clinical featurs""
     biotools:primaryContact "Webmaster of CnD" .
 
 <https://bio.tools/cner> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0659 ;
@@ -140385,7 +132299,7 @@ CMcrpred:Risk prediction in cutaneous melanoma patients using clinical featurs""
     biotools:primaryContact "Ge Tan" .
 
 <https://bio.tools/cnest> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0625,
@@ -140404,7 +132318,7 @@ CMcrpred:Risk prediction in cutaneous melanoma patients using clinical featurs""
     sc:url "https://github.com/tf2/CNest.git" .
 
 <https://bio.tools/cngbdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Bioinformatics portal" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0749,
@@ -140421,7 +132335,7 @@ CMcrpred:Risk prediction in cutaneous melanoma patients using clinical featurs""
     sc:url "https://db.cngb.org/" .
 
 <https://bio.tools/cnn-blpred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0123,
         edam:topic_3474 ;
@@ -140435,8 +132349,25 @@ CMcrpred:Risk prediction in cutaneous melanoma patients using clinical featurs""
     sc:url "https://github.com/whiteclarence/CNN-BLPred" ;
     biotools:primaryContact "KC Dukka" .
 
+<https://bio.tools/cnn-cox> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_2640,
+        edam:topic_3170,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1038/S41374-022-00801-Y>,
+        "pubmed:35810236" ;
+    sc:description "CNN-based survial prediction model combining with prognosis-related cascaded Wx feature selection." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_3927,
+        edam:operation_3936 ;
+    sc:license "Not licensed" ;
+    sc:name "CNN-Cox" ;
+    sc:url "https://github.com/wangwangCCChen/CNN-Cox" .
+
 <https://bio.tools/cnn-peaks> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3047,
         edam:topic_3169,
@@ -140453,8 +132384,26 @@ CMcrpred:Risk prediction in cutaneous melanoma patients using clinical featurs""
     sc:name "CNN-Peaks" ;
     sc:url "http://github.com/odb9402/CNNPeaks" .
 
+<https://bio.tools/cnn-peppred> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:applicationSubCategory edam:topic_0121,
+        edam:topic_0154,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAB687>,
+        "pmcid:PMC8652105",
+        "pubmed:34601583" ;
+    sc:description "CNN-PepPred is an open-source tool to create convolutional NN models for the discovery of patterns in peptide sets. Application to peptide-MHC class II binding prediction." ;
+    sc:featureList edam:operation_0252,
+        edam:operation_0416,
+        edam:operation_3927 ;
+    sc:license "Apache-2.0" ;
+    sc:name "CNN-PepPred" ;
+    sc:softwareHelp <https://github.com/ComputBiol-IBB/CNN-PepPred/blob/main/users_guide.pdf> ;
+    sc:url "https://github.com/ComputBiol-IBB/CNN-PepPred" ;
+    biotools:primaryContact <https://orcid.org/0000-0001-9235-6730> .
+
 <https://bio.tools/cnn-svr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_3168,
@@ -140471,7 +132420,7 @@ CMcrpred:Risk prediction in cutaneous melanoma patients using clinical featurs""
     sc:url "https://github.com/Peppags/CNN-SVR" .
 
 <https://bio.tools/cnnathubi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -140485,7 +132434,7 @@ CMcrpred:Risk prediction in cutaneous melanoma patients using clinical featurs""
     sc:url "http://github.com/nongdaxiaofeng/CNNAthUbi" .
 
 <https://bio.tools/cnncrispr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0203,
@@ -140503,7 +132452,7 @@ CMcrpred:Risk prediction in cutaneous melanoma patients using clinical featurs""
     sc:url "https://github.com/LQYoLH/CnnCrispr" .
 
 <https://bio.tools/cnngeno> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3175,
@@ -140520,7 +132469,7 @@ CMcrpred:Risk prediction in cutaneous melanoma patients using clinical featurs""
         "Lei Cai" .
 
 <https://bio.tools/cnnh_pss> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Web service" ;
     sc:applicationSubCategory edam:topic_3474,
@@ -140534,8 +132483,43 @@ CMcrpred:Risk prediction in cutaneous melanoma patients using clinical featurs""
     sc:url "http://hlt.hitsz.edu.cn/CNNH_PSS/" ;
     biotools:primaryContact "Ruifeng Xu" .
 
+<https://bio.tools/cnnpogtp> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0621,
+        edam:topic_3174,
+        edam:topic_3301 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC289>,
+        "pubmed:35460223" ;
+    sc:description "A CNN-based predictor website for identifying the optimal growth temperatures of prokaryotes using only genomic k-mers distribution." ;
+    sc:featureList edam:operation_2495 ;
+    sc:license "Not licensed" ;
+    sc:name "CnnPOGTP" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://www.orgene.net/CnnPOGTP" .
+
+<https://bio.tools/cnntrees> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0084,
+        edam:topic_0114,
+        edam:topic_0194,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1142/S0219720022500123>,
+        "pubmed:35798684" ;
+    sc:description "A CNN approach for multiple tree classification. It returns a number of clusters of the input phylogenetic trees for different-size sets of trees." ;
+    sc:featureList edam:operation_0326,
+        edam:operation_0553,
+        edam:operation_0555,
+        edam:operation_0556 ;
+    sc:license "Not licensed" ;
+    sc:name "CNNTrees" ;
+    sc:url "https://tahirinadia.github.io/" .
+
 <https://bio.tools/cnogpro> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0621 ;
@@ -140562,14 +132546,14 @@ CMcrpred:Risk prediction in cutaneous melanoma patients using clinical featurs""
 
 <https://bio.tools/cnordt> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ] ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:encodingFormat "http://edamontology.org/format_3619" ;
+            sc:name "Pathway or network" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2984" ;
-            sc:name "Pathway or network report" ;
-            sc:sameAs "http://edamontology.org/data_2984" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2984" ;
+            sc:encodingFormat "http://edamontology.org/format_3619" ;
+            sc:name "Pathway or network report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0602,
@@ -140590,18 +132574,18 @@ CMcrpred:Risk prediction in cutaneous melanoma patients using clinical featurs""
 
 <https://bio.tools/cnorfeeder> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0905" ;
-            sc:name "Protein interaction raw data" ;
-            sc:sameAs "http://edamontology.org/data_0905" ],
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Pathway or network" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ] ;
+            sc:additionalType "http://edamontology.org/data_0905" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Protein interaction raw data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2984" ;
-            sc:name "Pathway or network report" ;
-            sc:sameAs "http://edamontology.org/data_2984" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2984" ;
+            sc:encodingFormat "http://edamontology.org/format_3617" ;
+            sc:name "Pathway or network report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0602 ;
@@ -140620,7 +132604,7 @@ CMcrpred:Risk prediction in cutaneous melanoma patients using clinical featurs""
     biotools:primaryContact "F.Eduati" .
 
 <https://bio.tools/cnorfuzzy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3474 ;
@@ -140639,14 +132623,14 @@ CMcrpred:Risk prediction in cutaneous melanoma patients using clinical featurs""
 
 <https://bio.tools/cnorode> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ] ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:encodingFormat "http://edamontology.org/format_3619" ;
+            sc:name "Pathway or network" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2984" ;
-            sc:name "Pathway or network report" ;
-            sc:sameAs "http://edamontology.org/data_2984" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2984" ;
+            sc:encodingFormat "http://edamontology.org/format_3619" ;
+            sc:name "Pathway or network report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0602,
@@ -140665,20 +132649,43 @@ CMcrpred:Risk prediction in cutaneous melanoma patients using clinical featurs""
     sc:url "http://bioconductor.org/packages/release/bioc/html/CNORode.html" ;
     biotools:primaryContact "David Henriques" .
 
+<https://bio.tools/cnpare> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0654,
+        edam:topic_2229,
+        edam:topic_2640,
+        edam:topic_3295 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC371>,
+        "pmcid:PMC9272807",
+        "pubmed:35640971" ;
+    sc:description "CNpare is designed to compare and contrast genome-wide tumour copy number profiles." ;
+    sc:featureList edam:operation_3233,
+        edam:operation_3463,
+        edam:operation_3894 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "CNpare" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/macintyrelab/CNpare" .
+
 <https://bio.tools/cnpbayes> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2012" ;
-            sc:name "Sequence coordinates" ;
-            sc:sameAs "http://edamontology.org/data_2012" ] ;
+            sc:additionalType "http://edamontology.org/data_2012" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Sequence coordinates" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ],
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Plot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -140700,7 +132707,7 @@ CMcrpred:Risk prediction in cutaneous melanoma patients using clinical featurs""
     biotools:primaryContact "Jacob Carey" .
 
 <https://bio.tools/cnsa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0219,
         edam:topic_3070,
@@ -140716,7 +132723,7 @@ CMcrpred:Risk prediction in cutaneous melanoma patients using clinical featurs""
     sc:url "https://db.cngb.org/cnsa/" .
 
 <https://bio.tools/cnssolve> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0593,
         edam:topic_2275,
@@ -140734,7 +132741,7 @@ CMcrpred:Risk prediction in cutaneous melanoma patients using clinical featurs""
     sc:url "http://cns-online.org" .
 
 <https://bio.tools/cntools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0080 ;
@@ -140751,8 +132758,27 @@ CMcrpred:Risk prediction in cutaneous melanoma patients using clinical featurs""
     sc:url "http://bioconductor.org/packages/release/bioc/html/CNTools.html" ;
     biotools:primaryContact "J. Zhang" .
 
+<https://bio.tools/cnv-etlai> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0218,
+        edam:topic_3474,
+        edam:topic_3518,
+        edam:topic_3958 ;
+    sc:citation <https://doi.org/10.1016/J.COMPBIOMED.2022.105332>,
+        "pubmed:35240378" ;
+    sc:description "A scalable artificial intelligence platform that automatically finds copy number variations (CNVs) in journal articles and transforms them into a database." ;
+    sc:featureList edam:operation_3961 ;
+    sc:name "CNV-ETLAI" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://lmic.mgh.harvard.edu/CNV-ETLAI" .
+
 <https://bio.tools/cnv-jacg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Script" ;
     sc:applicationSubCategory edam:topic_0625,
@@ -140772,7 +132798,7 @@ CMcrpred:Risk prediction in cutaneous melanoma patients using clinical featurs""
     sc:url "https://github.com/sunnyzxh/CNV-JACG" .
 
 <https://bio.tools/cnv-pg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3474,
@@ -140785,7 +132811,7 @@ CMcrpred:Risk prediction in cutaneous melanoma patients using clinical featurs""
     sc:url "https://github.com/wonderful1/CNV-PG" .
 
 <https://bio.tools/cnv-seq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation "pubmed:19267900" ;
@@ -140798,8 +132824,29 @@ CMcrpred:Risk prediction in cutaneous melanoma patients using clinical featurs""
     sc:url "http://tiger.dbs.nus.edu.sg/cnv-seq/" ;
     biotools:primaryContact "Xie Chao" .
 
+<https://bio.tools/cnv_p> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workbench" ;
+    sc:applicationSubCategory edam:topic_3474,
+        edam:topic_3673,
+        edam:topic_3958 ;
+    sc:citation <https://doi.org/10.7717/PEERJ.12564>,
+        "pmcid:PMC8645205",
+        "pubmed:34917425" ;
+    sc:description "CNV-P: A machine-learning framework for filtering copy number variations." ;
+    sc:featureList edam:operation_3359,
+        edam:operation_3695,
+        edam:operation_3961 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "CNV-P" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/wonderful1/CNV-P" .
+
 <https://bio.tools/cnvcaller> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_3056,
@@ -140817,7 +132864,7 @@ CMcrpred:Risk prediction in cutaneous melanoma patients using clinical featurs""
     biotools:primaryContact "Yu Jiang" .
 
 <https://bio.tools/cnver> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0199,
@@ -140837,7 +132884,7 @@ CMcrpred:Risk prediction in cutaneous melanoma patients using clinical featurs""
     biotools:primaryContact "CNVer support" .
 
 <https://bio.tools/cnvfilter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3168,
@@ -140857,7 +132904,7 @@ CMcrpred:Risk prediction in cutaneous melanoma patients using clinical featurs""
         "Conxi Lázaro" .
 
 <https://bio.tools/cnvgsa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0199 ;
@@ -140875,7 +132922,7 @@ CMcrpred:Risk prediction in cutaneous melanoma patients using clinical featurs""
     biotools:primaryContact "Joseph Lugo" .
 
 <https://bio.tools/cnvhap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3053 ;
@@ -140890,8 +132937,31 @@ CMcrpred:Risk prediction in cutaneous melanoma patients using clinical featurs""
     sc:url "http://www.imperial.ac.uk/people/l.coin" ;
     biotools:primaryContact "LACHLAN COIN" .
 
+<https://bio.tools/cnvind> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Workflow" ;
+    sc:applicationSubCategory edam:topic_0622,
+        edam:topic_3316,
+        edam:topic_3673,
+        edam:topic_3676,
+        edam:topic_3958 ;
+    sc:citation <https://doi.org/10.1186/S12859-022-04617-X>,
+        "pmcid:PMC8897915",
+        "pubmed:35247967" ;
+    sc:description "An open source cloud-based pipeline for rare CNVs detection in whole exome sequencing data based on the depth of coverage." ;
+    sc:featureList edam:operation_3435,
+        edam:operation_3961 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "CNVind" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/wkusmirek/CNVind" .
+
 <https://bio.tools/cnvintegrate> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_2640,
@@ -140909,7 +132979,7 @@ CMcrpred:Risk prediction in cutaneous melanoma patients using clinical featurs""
     sc:url "http://cnvintegrate.cgm.ntu.edu.tw/" .
 
 <https://bio.tools/cnvkit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3175 ;
     sc:citation <https://doi.org/10.1371/journal.pcbi.1004873> ;
@@ -140923,7 +132993,7 @@ CMcrpred:Risk prediction in cutaneous melanoma patients using clinical featurs""
     biotools:primaryContact "Boris C. Bastian" .
 
 <https://bio.tools/cnvnator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0625,
@@ -140939,7 +133009,7 @@ CMcrpred:Risk prediction in cutaneous melanoma patients using clinical featurs""
     biotools:primaryContact "Alexej Abyzov" .
 
 <https://bio.tools/cnvoffseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_3175,
@@ -140957,7 +133027,7 @@ CMcrpred:Risk prediction in cutaneous melanoma patients using clinical featurs""
     biotools:primaryContact "Support" .
 
 <https://bio.tools/cnvpanelizer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3168 ;
@@ -140975,7 +133045,7 @@ CMcrpred:Risk prediction in cutaneous melanoma patients using clinical featurs""
     biotools:primaryContact "Thomas Wolf" .
 
 <https://bio.tools/cnvpytor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2885,
         edam:topic_3673,
@@ -140994,18 +133064,18 @@ CMcrpred:Risk prediction in cutaneous melanoma patients using clinical featurs""
 
 <https://bio.tools/cnvrd2> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ] ;
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence variations" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ],
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Plot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1772" ;
-            sc:name "Score" ;
-            sc:sameAs "http://edamontology.org/data_1772" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1772" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Score" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2885,
@@ -141025,7 +133095,7 @@ CMcrpred:Risk prediction in cutaneous melanoma patients using clinical featurs""
     biotools:primaryContact "Hoang Tan Nguyen" .
 
 <https://bio.tools/cnvtools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0199,
@@ -141044,7 +133114,7 @@ CMcrpred:Risk prediction in cutaneous melanoma patients using clinical featurs""
     biotools:primaryContact "Chris Barnes" .
 
 <https://bio.tools/cnvxplorer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -141061,7 +133131,7 @@ CMcrpred:Risk prediction in cutaneous melanoma patients using clinical featurs""
     sc:url "http://cnvxplorer.com" .
 
 <https://bio.tools/co-amppred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0769,
@@ -141078,7 +133148,7 @@ CMcrpred:Risk prediction in cutaneous melanoma patients using clinical featurs""
     sc:url "https://github.com/onkarS23/CoAMPpred" .
 
 <https://bio.tools/co-correcting> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3384 ;
@@ -141093,7 +133163,7 @@ CMcrpred:Risk prediction in cutaneous melanoma patients using clinical featurs""
     sc:url "https://github.com/JiarunLiu/Co-Correcting" .
 
 <https://bio.tools/co-var> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Bioinformatics portal",
         "Suite" ;
     sc:applicationSubCategory edam:topic_0128,
@@ -141115,7 +133185,7 @@ CMcrpred:Risk prediction in cutaneous melanoma patients using clinical featurs""
     sc:url "http://www.hpppi.iicb.res.in/ishi/covar/index.html" .
 
 <https://bio.tools/coabind> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_3510,
@@ -141133,7 +133203,7 @@ CMcrpred:Risk prediction in cutaneous melanoma patients using clinical featurs""
         "Zhenling Peng" .
 
 <https://bio.tools/coach-d> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_2275,
@@ -141149,7 +133219,7 @@ CMcrpred:Risk prediction in cutaneous melanoma patients using clinical featurs""
     sc:url "http://yanglab.nankai.edu.cn/COACH-D/" .
 
 <https://bio.tools/coai> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3403,
         edam:topic_3474,
@@ -141163,10 +133233,9 @@ CMcrpred:Risk prediction in cutaneous melanoma patients using clinical featurs""
 
 <https://bio.tools/coannealing> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:name "Sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0091 ;
     sc:description "Simulated Annealing Search for Coalescent Trees." ;
@@ -141183,10 +133252,9 @@ CMcrpred:Risk prediction in cutaneous melanoma patients using clinical featurs""
 
 <https://bio.tools/coasim> a sc:SoftwareApplication ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:name "Sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3053 ;
     sc:citation <https://doi.org/10.1186/1471-2105-6-252> ;
@@ -141203,7 +133271,7 @@ CMcrpred:Risk prediction in cutaneous melanoma patients using clinical featurs""
     biotools:primaryContact "Thomas Mailund" .
 
 <https://bio.tools/coatran> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0781,
         edam:topic_3305,
@@ -141217,7 +133285,7 @@ CMcrpred:Risk prediction in cutaneous melanoma patients using clinical featurs""
     sc:url "https://github.com/niemasd/CoaTran" .
 
 <https://bio.tools/cobia> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -141233,7 +133301,7 @@ CMcrpred:Risk prediction in cutaneous melanoma patients using clinical featurs""
     sc:url "https://github.com/bertrand-lab/cobia" .
 
 <https://bio.tools/cobindr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0749,
@@ -141253,7 +133321,7 @@ CMcrpred:Risk prediction in cutaneous melanoma patients using clinical featurs""
     biotools:primaryContact "Manuela Benary" .
 
 <https://bio.tools/cobolt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2229,
@@ -141271,7 +133339,7 @@ CMcrpred:Risk prediction in cutaneous melanoma patients using clinical featurs""
     biotools:primaryContact <https://orcid.org/0000-0001-9455-7990> .
 
 <https://bio.tools/cobra> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0769,
         edam:topic_3169,
@@ -141289,7 +133357,7 @@ CoBRA combines the use of several dozen ChIP/ATAC‐seq tools, suites, and packa
     sc:url "https://bitbucket.org/cfce/cobra" .
 
 <https://bio.tools/cobrac> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3382 ;
@@ -141305,7 +133373,7 @@ CoBRA combines the use of several dozen ChIP/ATAC‐seq tools, suites, and packa
         "Eric C Chi" .
 
 <https://bio.tools/cobrapy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -141324,7 +133392,7 @@ CoBRA combines the use of several dozen ChIP/ATAC‐seq tools, suites, and packa
     biotools:primaryContact "openCOBRA" .
 
 <https://bio.tools/cocas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3179,
         edam:topic_3518,
@@ -141342,7 +133410,7 @@ CoBRA combines the use of several dozen ChIP/ATAC‐seq tools, suites, and packa
     sc:url "http://www.ciml.univ-mrs.fr/software/cocas/index.html" .
 
 <https://bio.tools/cocin> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_3307 ;
     sc:citation "pubmed:24564762" ;
@@ -141354,18 +133422,18 @@ CoBRA combines the use of several dozen ChIP/ATAC‐seq tools, suites, and packa
 
 <https://bio.tools/cocitestats> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1904" ;
-            sc:name "Locus ID (EntrezGene)" ;
-            sc:sameAs "http://edamontology.org/data_1904" ] ;
+            sc:additionalType "http://edamontology.org/data_1904" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Locus ID (EntrezGene)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1772" ;
-            sc:name "Score" ;
-            sc:sameAs "http://edamontology.org/data_1772" ],
+            sc:additionalType "http://edamontology.org/data_0972" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Text mining report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0972" ;
-            sc:name "Text mining report" ;
-            sc:sameAs "http://edamontology.org/data_0972" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1772" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Score" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0218 ;
@@ -141384,7 +133452,7 @@ CoBRA combines the use of several dozen ChIP/ATAC‐seq tools, suites, and packa
     biotools:primaryContact "BioConductor Package Maintainer" .
 
 <https://bio.tools/cocoa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3168,
@@ -141401,7 +133469,7 @@ CoBRA combines the use of several dozen ChIP/ATAC‐seq tools, suites, and packa
     sc:url "http://bioconductor.org/packages/COCOA" .
 
 <https://bio.tools/cococonet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0621,
@@ -141418,7 +133486,7 @@ CoBRA combines the use of several dozen ChIP/ATAC‐seq tools, suites, and packa
     sc:url "ftp://milton.cshl.edu/data/scripts/cococonetLite.R" .
 
 <https://bio.tools/cocomaps> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3307 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btr484>,
@@ -141437,7 +133505,7 @@ CoBRA combines the use of several dozen ChIP/ATAC‐seq tools, suites, and packa
     biotools:primaryContact "Luigi Cavallo" .
 
 <https://bio.tools/cocomorp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3063,
         edam:topic_3360,
@@ -141450,7 +133518,7 @@ CoBRA combines the use of several dozen ChIP/ATAC‐seq tools, suites, and packa
     sc:url "https://ashis-das.shinyapps.io/CoCoMoRP/" .
 
 <https://bio.tools/coconet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0097,
@@ -141467,7 +133535,7 @@ CoBRA combines the use of several dozen ChIP/ATAC‐seq tools, suites, and packa
     sc:url "https://github.com/KIT-MBS/coconet" .
 
 <https://bio.tools/coconet-viral> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0654,
@@ -141486,7 +133554,7 @@ CoBRA combines the use of several dozen ChIP/ATAC‐seq tools, suites, and packa
     sc:url "https://github.com/Puumanamana/CoCoNet" .
 
 <https://bio.tools/coconut> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web API" ;
     sc:applicationSubCategory edam:topic_0154,
@@ -141503,8 +133571,30 @@ CoBRA combines the use of several dozen ChIP/ATAC‐seq tools, suites, and packa
     sc:softwareHelp <https://coconut.naturalproducts.net/documentation> ;
     sc:url "https://coconut.naturalproducts.net" .
 
+<https://bio.tools/cocopred> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0082,
+        edam:topic_0154,
+        edam:topic_0166,
+        edam:topic_0736,
+        edam:topic_0820 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAB744>,
+        "pubmed:34718416" ;
+    sc:description "Coiled-coil protein structural feature prediction from amino acid sequence using deep neural networks." ;
+    sc:featureList edam:operation_0253,
+        edam:operation_0272,
+        edam:operation_0474,
+        edam:operation_3092 ;
+    sc:isAccessibleForFree true ;
+    sc:name "CoCoPRED" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://www.csbio.sjtu.edu.cn/bioinf/CoCoPRED" .
+
 <https://bio.tools/cod> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_3382 ;
     sc:citation <https://doi.org/10.1109/TPAMI.2021.3085766>,
@@ -141514,8 +133604,33 @@ CoBRA combines the use of several dozen ChIP/ATAC‐seq tools, suites, and packa
     sc:name "COD" ;
     sc:url "http://mmcheng.net/cod" .
 
+<https://bio.tools/cod-dipp> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2299" ;
+            sc:name "Gene name" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_2640,
+        edam:topic_2830,
+        edam:topic_3930,
+        edam:topic_3966 ;
+    sc:citation <https://doi.org/10.1101/2022.01.13.475872> ;
+    sc:description "Establishing immune-relevant regions for cancer vaccine design." ;
+    sc:featureList edam:operation_0252,
+        edam:operation_0416,
+        edam:operation_3227,
+        edam:operation_3629,
+        edam:operation_3755 ;
+    sc:isAccessibleForFree true ;
+    sc:name "COD-dipp" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://www.proteogenomics.ca/COD-dipp" .
+
 <https://bio.tools/codabc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0099,
@@ -141532,8 +133647,27 @@ CoBRA combines the use of several dozen ChIP/ATAC‐seq tools, suites, and packa
     sc:url "https://code.google.com/archive/p/codabc/" ;
     biotools:primaryContact "Miguel Arenas" .
 
+<https://bio.tools/codabench> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0605,
+        edam:topic_2640,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1016/J.PATTER.2022.100543>,
+        "pmcid:PMC9278500",
+        "pubmed:35845844" ;
+    sc:description "Codabench, a meta-benchmark platform that is open sourced and community driven for benchmarking algorithms or software agents versus datasets or tasks." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_2422 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Apache-2.0" ;
+    sc:name "Codabench" ;
+    sc:operatingSystem "Linux" ;
+    sc:softwareHelp <https://github.com/codalab/codabench/wiki> ;
+    sc:url "https://github.com/codalab/codabench/" .
+
 <https://bio.tools/codacore> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3168,
         edam:topic_3174,
@@ -141554,7 +133688,7 @@ CoBRA combines the use of several dozen ChIP/ATAC‐seq tools, suites, and packa
     sc:url "https://github.com/egr95/R-codacore" .
 
 <https://bio.tools/codak> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_2229,
@@ -141568,7 +133702,7 @@ CoBRA combines the use of several dozen ChIP/ATAC‐seq tools, suites, and packa
     sc:url "http://github.com/GhoshLab/CODAK/" .
 
 <https://bio.tools/codaloss> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0659,
@@ -141583,18 +133717,15 @@ CoBRA combines the use of several dozen ChIP/ATAC‐seq tools, suites, and packa
 
 <https://bio.tools/codcmp> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1597" ;
-            sc:name "Codon usage table" ;
-            sc:sameAs "http://edamontology.org/data_1597" ],
+            sc:additionalType "http://edamontology.org/data_1597" ;
+            sc:name "Codon usage table" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1597" ;
-            sc:name "Codon usage table" ;
-            sc:sameAs "http://edamontology.org/data_1597" ] ;
+            sc:additionalType "http://edamontology.org/data_1597" ;
+            sc:name "Codon usage table" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1602" ;
-            sc:name "Codon usage fraction difference" ;
-            sc:sameAs "http://edamontology.org/data_1602" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1602" ;
+            sc:name "Codon usage fraction difference" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -141625,14 +133756,12 @@ CoBRA combines the use of several dozen ChIP/ATAC‐seq tools, suites, and packa
 
 <https://bio.tools/codcopy> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1597" ;
-            sc:name "Codon usage table" ;
-            sc:sameAs "http://edamontology.org/data_1597" ] ;
+            sc:additionalType "http://edamontology.org/data_1597" ;
+            sc:name "Codon usage table" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1597" ;
-            sc:name "Codon usage table" ;
-            sc:sameAs "http://edamontology.org/data_1597" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1597" ;
+            sc:name "Codon usage table" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -141663,7 +133792,7 @@ CoBRA combines the use of several dozen ChIP/ATAC‐seq tools, suites, and packa
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/codcopy.html" .
 
 <https://bio.tools/codecheck> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3050,
@@ -141680,7 +133809,7 @@ CoBRA combines the use of several dozen ChIP/ATAC‐seq tools, suites, and packa
     biotools:primaryContact <https://orcid.org/0000-0002-0024-5046> .
 
 <https://bio.tools/codehop> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0632,
         edam:topic_0634,
@@ -141702,7 +133831,7 @@ CoBRA combines the use of several dozen ChIP/ATAC‐seq tools, suites, and packa
     biotools:primaryContact "Contact form" .
 
 <https://bio.tools/codelink> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3518 ;
@@ -141720,20 +133849,34 @@ CoBRA combines the use of several dozen ChIP/ATAC‐seq tools, suites, and packa
     sc:url "http://bioconductor.org/packages/release/bioc/html/codelink.html" ;
     biotools:primaryContact <http://orcid.org/0000-0002-2325-4893> .
 
+<https://bio.tools/coder> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0218,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1016/J.JBI.2021.103983>,
+        "pubmed:34990838" ;
+    sc:description "CODER embeddings excellently reflect semantic similarity and relatedness of medical concepts. One can use CODER for embedding-based medical term normalization or to provide features for machine learning. Similar to other pretrained language models, CODER can also be fine-tuned for specific tasks." ;
+    sc:featureList edam:operation_3432,
+        edam:operation_3435 ;
+    sc:isAccessibleForFree true ;
+    sc:name "CODER" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/GanjinZero/CODER" .
+
 <https://bio.tools/coderet> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2887" ;
-            sc:name "Nucleic acid sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2887" ] ;
+            sc:additionalType "http://edamontology.org/data_2887" ;
+            sc:name "Nucleic acid sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2886" ;
-            sc:name "Protein sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2886" ],
+            sc:additionalType "http://edamontology.org/data_2887" ;
+            sc:name "Nucleic acid sequence record" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2887" ;
-            sc:name "Nucleic acid sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2887" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2886" ;
+            sc:name "Protein sequence record" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3077 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -141765,7 +133908,7 @@ CoBRA combines the use of several dozen ChIP/ATAC‐seq tools, suites, and packa
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/coderet.html" .
 
 <https://bio.tools/codex> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3676 ;
@@ -141783,7 +133926,7 @@ CoBRA combines the use of several dozen ChIP/ATAC‐seq tools, suites, and packa
     biotools:primaryContact "Yuchao Jiang" .
 
 <https://bio.tools/codex_ngs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_3168,
         edam:topic_3169,
@@ -141803,7 +133946,7 @@ CoBRA combines the use of several dozen ChIP/ATAC‐seq tools, suites, and packa
     biotools:primaryContact "Bertie Gottgens" .
 
 <https://bio.tools/codifold> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0621,
         edam:topic_2814 ;
@@ -141817,7 +133960,7 @@ CoBRA combines the use of several dozen ChIP/ATAC‐seq tools, suites, and packa
     sc:url "http://github.com/iobio-zjut/CoDiFold" .
 
 <https://bio.tools/codina> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0610,
@@ -141836,7 +133979,7 @@ CoBRA combines the use of several dozen ChIP/ATAC‐seq tools, suites, and packa
     sc:url "https://CRAN.R-project.org/package=CoDiNA" .
 
 <https://bio.tools/codis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3512 ;
     sc:description "Combined DNA Index System (CODIS) is a GUI tool for forensic paternity lawsuit." ;
@@ -141850,7 +133993,7 @@ CoBRA combines the use of several dozen ChIP/ATAC‐seq tools, suites, and packa
     biotools:primaryContact "Giuseppe Cardillo" .
 
 <https://bio.tools/codnas-rna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0099,
@@ -141865,7 +134008,7 @@ CoBRA combines the use of several dozen ChIP/ATAC‐seq tools, suites, and packa
     sc:url "http://ufq.unq.edu.ar/codnasrna" .
 
 <https://bio.tools/codon_congruence> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Script" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -141887,7 +134030,7 @@ CoBRA combines the use of several dozen ChIP/ATAC‐seq tools, suites, and packa
     biotools:primaryContact "Justin Miller" .
 
 <https://bio.tools/codon_usage_database> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0203,
@@ -141908,7 +134051,7 @@ CoBRA combines the use of several dozen ChIP/ATAC‐seq tools, suites, and packa
     sc:url "http://www.kazusa.or.jp/codon/" .
 
 <https://bio.tools/codonadjust> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0203,
@@ -141924,7 +134067,7 @@ CoBRA combines the use of several dozen ChIP/ATAC‐seq tools, suites, and packa
     sc:url "https://github.com/tiffany-nguyen/CodonAdjust" .
 
 <https://bio.tools/codono> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0622 ;
@@ -141945,7 +134088,7 @@ CoBRA combines the use of several dozen ChIP/ATAC‐seq tools, suites, and packa
     biotools:primaryContact "Ginger Han" .
 
 <https://bio.tools/codonw> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "Simplify the Multivariate analysis (correspondence analysis) of codon and amino acid usage" ;
     sc:featureList edam:operation_0236 ;
     sc:license "GPL-2.0" ;
@@ -141954,7 +134097,7 @@ CoBRA combines the use of several dozen ChIP/ATAC‐seq tools, suites, and packa
     sc:url "http://codonw.sourceforge.net" .
 
 <https://bio.tools/codp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0199,
@@ -141972,7 +134115,7 @@ CoBRA combines the use of several dozen ChIP/ATAC‐seq tools, suites, and packa
     biotools:primaryContact "Support" .
 
 <https://bio.tools/codysan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3325,
         edam:topic_3382,
@@ -141997,7 +134140,7 @@ CoDysAn collaborates with various Associations.""" ;
     sc:url "http://www.codysan.eu" .
 
 <https://bio.tools/coeus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0089,
@@ -142024,7 +134167,7 @@ CoDysAn collaborates with various Associations.""" ;
         "Pedro Sernadela" .
 
 <https://bio.tools/coev-web> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3299 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btu012> ;
@@ -142039,7 +134182,7 @@ CoDysAn collaborates with various Associations.""" ;
     biotools:primaryContact "Coev Support" .
 
 <https://bio.tools/coexnet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2259,
@@ -142059,7 +134202,7 @@ CoDysAn collaborates with various Associations.""" ;
     biotools:primaryContact "Juan David Henao" .
 
 <https://bio.tools/coexp-web> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_2229,
@@ -142077,18 +134220,17 @@ CoDysAn collaborates with various Associations.""" ;
 
 <https://bio.tools/coexpnetviz> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Gene expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ] ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Gene expression data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ],
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3477" ;
+            sc:name "Image" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:name "Pathway or network" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -142105,7 +134247,7 @@ CoDysAn collaborates with various Associations.""" ;
     sc:url "http://bioinformatics.psb.ugent.be/webtools/coexpr/" .
 
 <https://bio.tools/cofactor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0160,
@@ -142128,14 +134270,14 @@ CoDysAn collaborates with various Associations.""" ;
 
 <https://bio.tools/cofactory> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Protein features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3510 ;
     sc:citation <https://doi.org/10.1002/prot.24536> ;
@@ -142152,7 +134294,7 @@ CoDysAn collaborates with various Associations.""" ;
     biotools:primaryContact "Thomas Nordahl Petersen" .
 
 <https://bio.tools/coffeeprot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -142172,7 +134314,7 @@ CoDysAn collaborates with various Associations.""" ;
     sc:url "http://www.coffeeprot.com" .
 
 <https://bio.tools/cofly> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0625,
@@ -142191,18 +134333,18 @@ CoDysAn collaborates with various Associations.""" ;
 
 <https://bio.tools/cogaps> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Gene expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ] ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_2058" ;
+            sc:name "Gene expression data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ],
+            sc:additionalType "http://edamontology.org/data_1772" ;
+            sc:encodingFormat "http://edamontology.org/format_3508" ;
+            sc:name "Score" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1772" ;
-            sc:name "Score" ;
-            sc:sameAs "http://edamontology.org/data_1772" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3508" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203 ;
@@ -142221,22 +134363,20 @@ CoDysAn collaborates with various Associations.""" ;
 
 <https://bio.tools/cogeme> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2730" ;
-            sc:name "COGEME unisequence ID" ;
-            sc:sameAs "http://edamontology.org/data_2730" ],
+            sc:additionalType "http://edamontology.org/data_2729" ;
+            sc:name "COGEME EST ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2729" ;
-            sc:name "COGEME EST ID" ;
-            sc:sameAs "http://edamontology.org/data_2729" ] ;
+            sc:additionalType "http://edamontology.org/data_2730" ;
+            sc:name "COGEME unisequence ID" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ],
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Sequence record" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Sequence record" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_3512 ;
@@ -142252,7 +134392,7 @@ CoDysAn collaborates with various Associations.""" ;
     sc:url "http://cogeme.ex.ac.uk/" .
 
 <https://bio.tools/cogena> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -142271,7 +134411,7 @@ CoDysAn collaborates with various Associations.""" ;
     biotools:primaryContact "Zhilong Jia" .
 
 <https://bio.tools/cogent> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0203,
@@ -142284,8 +134424,30 @@ CoDysAn collaborates with various Associations.""" ;
     sc:name "COGENT" ;
     sc:url "https://github.com/lbozhilova/COGENT" .
 
+<https://bio.tools/cogito> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_3169,
+        edam:topic_3170,
+        edam:topic_3173,
+        edam:topic_3518 ;
+    sc:citation <https://doi.org/10.1186/S12859-022-04853-1>,
+        "pmcid:PMC9351259",
+        "pubmed:35927614" ;
+    sc:description "Cogito “COmpare annotated Genomic Intervals TOol” provides a workflow for an unbiased, structured overview and systematic analysis of complex genomic datasets consisting of different data types (e.g. RNA-seq, ChIP-seq) and conditions." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_0362,
+        edam:operation_3436 ;
+    sc:isAccessibleForFree true ;
+    sc:license "LGPL-3.0" ;
+    sc:name "Cogito" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://bioconductor.org/packages/release/bioc/html/Cogito.html" .
+
 <https://bio.tools/cognac> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0097,
@@ -142309,7 +134471,7 @@ CoDysAn collaborates with various Associations.""" ;
     biotools:primaryContact "COGNAC Support" .
 
 <https://bio.tools/cognac-align> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0102,
@@ -142324,8 +134486,27 @@ CoDysAn collaborates with various Associations.""" ;
     sc:name "cognac" ;
     sc:url "https://github.com/rdcrawford/cognac" .
 
+<https://bio.tools/cogo> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0089,
+        edam:topic_0602,
+        edam:topic_0634,
+        edam:topic_3322,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC520>,
+        "pubmed:35900147" ;
+    sc:description "A contrastive learning framework to predict disease similarity based on gene network and ontology structure." ;
+    sc:featureList edam:operation_0303,
+        edam:operation_3927,
+        edam:operation_3937 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "CoGO" ;
+    sc:url "https://github.com/yhchen1123/CoGO" .
+
 <https://bio.tools/cogps> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2640,
@@ -142344,7 +134525,7 @@ CoDysAn collaborates with various Associations.""" ;
     biotools:primaryContact "Yingying Wei" .
 
 <https://bio.tools/cogrim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3179 ;
@@ -142362,7 +134543,7 @@ CoDysAn collaborates with various Associations.""" ;
     sc:url "http://www.cbil.upenn.edu/COGRIM/" .
 
 <https://bio.tools/cogs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0219,
@@ -142381,7 +134562,7 @@ CoDysAn collaborates with various Associations.""" ;
     sc:url "http://www.ncbi.nlm.nih.gov/COG/" .
 
 <https://bio.tools/cogstack> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0154,
         edam:topic_0218,
@@ -142403,7 +134584,7 @@ CogStack is a lightweight distributed, fault tolerant database processing archit
     sc:url "https://github.com/RichJackson/cogstack/" .
 
 <https://bio.tools/cogtale> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_3399,
         edam:topic_3401,
@@ -142415,8 +134596,33 @@ CogStack is a lightweight distributed, fault tolerant database processing archit
     sc:name "CogTale" ;
     sc:url "https://cogtale.org" .
 
+<https://bio.tools/cogvic> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_2640,
+        edam:topic_2885,
+        edam:topic_3170,
+        edam:topic_3512,
+        edam:topic_3676 ;
+    sc:citation <https://doi.org/10.1093/DATABASE/BAAB075>,
+        "pmcid:PMC8730286",
+        "pubmed:34964846" ;
+    sc:description "COGVIC(Catalogue Of Germline Variants In Cancer). A comprehensive database of germline pathogenic variants in East Asian pan-cancer patients." ;
+    sc:featureList edam:operation_2421,
+        edam:operation_2422,
+        edam:operation_3225,
+        edam:operation_3227,
+        edam:operation_3431 ;
+    sc:isAccessibleForFree true ;
+    sc:name "COGVIC" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://www.cogvic.vip/" .
+
 <https://bio.tools/cohcap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -142438,7 +134644,7 @@ CogStack is a lightweight distributed, fault tolerant database processing archit
     biotools:primaryContact "Charles Warden" .
 
 <https://bio.tools/cohorts> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3303,
@@ -142458,7 +134664,7 @@ CogStack is a lightweight distributed, fault tolerant database processing archit
     biotools:primaryContact "Nicholas P. Tatonetti" .
 
 <https://bio.tools/coil> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0154,
@@ -142480,8 +134686,22 @@ Designed for the cleaning, contextualization and assessment of cytochrome c oxid
     sc:name "coil" ;
     sc:url "https://cran.r-project.org/web/packages/coil/index.html" .
 
+<https://bio.tools/coilgen> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Desktop application" ;
+    sc:applicationSubCategory edam:topic_0593,
+        edam:topic_3444 ;
+    sc:citation <https://doi.org/10.1002/MRM.29294>,
+        "pubmed:35526237" ;
+    sc:description "The CoilGen Project is a community-based tool for the generation of coil Layouts within the MRI/NMR environment." ;
+    sc:featureList edam:operation_0268 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "CoilGen" ;
+    sc:url "https://github.com/Philipp-MR/CoilGen" .
+
 <https://bio.tools/coils> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_2269,
@@ -142498,7 +134718,7 @@ Designed for the cleaning, contextualization and assessment of cytochrome c oxid
     biotools:primaryContact "Grégoire Rossier" .
 
 <https://bio.tools/coinstac> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3304 ;
     sc:citation <https://doi.org/10.12688/f1000research.12353.1> ;
@@ -142508,8 +134728,17 @@ Designed for the cleaning, contextualization and assessment of cytochrome c oxid
     sc:name "COINSTAC" ;
     sc:url "https://github.com/MRN-code/coinstac" .
 
+<https://bio.tools/cojac> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:citation <https://doi.org/10.1101/2021.01.08.21249379> ;
+    sc:description "CoOccurrence adJusted Analysis and Calling - The cojac package comprises a set of command-line tools to analyse co-occurrence of mutations on amplicons. It is useful, for example, for early detection of viral variants of concern (e.g. Alpha, Delta, Omicron) in environmental samples, and has been designed to scan for multiple SARS-CoV-2 variants in wastewater samples, as analyzed jointly by ETH Zurich, EPFL and Eawag." ;
+    sc:license "GPL-3.0" ;
+    sc:name "COJAC" ;
+    sc:url "https://github.com/cbg-ethz/cojac" .
+
 <https://bio.tools/coke> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Script" ;
     sc:applicationSubCategory edam:topic_0089,
@@ -142524,7 +134753,7 @@ Designed for the cleaning, contextualization and assessment of cytochrome c oxid
     sc:url "https://coke.mml.unc.edu/" .
 
 <https://bio.tools/cola> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2885,
@@ -142542,7 +134771,7 @@ Designed for the cleaning, contextualization and assessment of cytochrome c oxid
     sc:url "https://jokergoo.github.io/cola_collection/" .
 
 <https://bio.tools/colabfold> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0082,
@@ -142564,7 +134793,7 @@ Designed for the cleaning, contextualization and assessment of cytochrome c oxid
     sc:url "http://colabfold.mmseqs.com" .
 
 <https://bio.tools/colauc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269 ;
     sc:description "Calculates Area under ROC curve (AUC) for a vector or for each column of a matrix." ;
@@ -142579,7 +134808,7 @@ Designed for the cleaning, contextualization and assessment of cytochrome c oxid
     biotools:primaryContact "Jaroslaw Tuszynski" .
 
 <https://bio.tools/colbuilder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2828,
@@ -142592,7 +134821,7 @@ Designed for the cleaning, contextualization and assessment of cytochrome c oxid
     sc:url "https://colbuilder.h-its.org" .
 
 <https://bio.tools/colfeatures> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_3301,
         edam:topic_3474,
@@ -142608,7 +134837,7 @@ Designed for the cleaning, contextualization and assessment of cytochrome c oxid
     biotools:primaryContact <http://orcid.org/0000-0001-5257-2121> .
 
 <https://bio.tools/colib_read> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0091,
@@ -142628,7 +134857,7 @@ Designed for the cleaning, contextualization and assessment of cytochrome c oxid
     biotools:primaryContact "Pierre Peterlongo" .
 
 <https://bio.tools/colide> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Library" ;
     sc:applicationSubCategory edam:topic_0108,
@@ -142648,10 +134877,9 @@ Designed for the cleaning, contextualization and assessment of cytochrome c oxid
 
 <https://bio.tools/colims> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:name "Mass spectrometry data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0121 ;
@@ -142665,7 +134893,7 @@ Designed for the cleaning, contextualization and assessment of cytochrome c oxid
     sc:url "https://github.com/compomics/colims" .
 
 <https://bio.tools/collBook> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0780,
         edam:topic_3050,
@@ -142681,7 +134909,7 @@ Designed for the cleaning, contextualization and assessment of cytochrome c oxid
     sc:url "https://github.com/CapPow/collBook" .
 
 <https://bio.tools/collapsabel> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3053 ;
@@ -142699,34 +134927,34 @@ Designed for the cleaning, contextualization and assessment of cytochrome c oxid
 
 <https://bio.tools/collapsereads> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1975" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ],
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_3003" ;
+            sc:name "Annotation track" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2306" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
+            sc:name "Sequence trace" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2305" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1975" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3168 ;
@@ -142744,7 +134972,7 @@ Designed for the cleaning, contextualization and assessment of cytochrome c oxid
     biotools:primaryContact "Galaxy Support Team" .
 
 <https://bio.tools/collateral-missing-value-estimation> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3070,
@@ -142764,14 +134992,14 @@ Designed for the cleaning, contextualization and assessment of cytochrome c oxid
 
 <https://bio.tools/collect_mgf> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3651" ;
+            sc:name "Mass spectrometry spectra" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3651" ;
+            sc:name "Mass spectrometry spectra" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -142788,7 +135016,7 @@ Designed for the cleaning, contextualization and assessment of cytochrome c oxid
     sc:url "http://www.ms-utils.org/collect_mgf.c" .
 
 <https://bio.tools/coloc3d> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -142804,8 +135032,26 @@ Designed for the cleaning, contextualization and assessment of cytochrome c oxid
     sc:url "https://www.mathworks.com/matlabcentral/fileexchange/5694-coloc3d" ;
     biotools:primaryContact "W. Bryan Smith" .
 
+<https://bio.tools/colocquial> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workflow" ;
+    sc:applicationSubCategory edam:topic_0769,
+        edam:topic_2885,
+        edam:topic_3517 ;
+    sc:citation <https://doi.org/10.1101/2021.11.05.21265991> ;
+    sc:description "Pipeline for running colocalization tests between GTEx version 8 single-tissue eQTLs or sQTLs and GWAS signals using COLOC." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3232,
+        edam:operation_3799 ;
+    sc:isAccessibleForFree true ;
+    sc:name "ColocQuiaL" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/bychen9/eQTL_colocalizer" .
+
 <https://bio.tools/colocr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3168,
         edam:topic_3382 ;
@@ -142825,7 +135071,7 @@ Designed for the cleaning, contextualization and assessment of cytochrome c oxid
     sc:url "https://github.com/ropensci/colocr" .
 
 <https://bio.tools/colombo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0622,
@@ -142843,7 +135089,7 @@ Designed for the cleaning, contextualization and assessment of cytochrome c oxid
     sc:url "https://www.uni-goettingen.de/en/research/185810.html" .
 
 <https://bio.tools/colombos> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0085,
         edam:topic_0621,
@@ -142865,7 +135111,7 @@ Designed for the cleaning, contextualization and assessment of cytochrome c oxid
     sc:url "http://colombos.net/" .
 
 <https://bio.tools/color-data> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0634,
@@ -142883,7 +135129,7 @@ Designed for the cleaning, contextualization and assessment of cytochrome c oxid
     sc:url "https://data.color.com/" .
 
 <https://bio.tools/colorado-3d> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0166,
@@ -142906,7 +135152,7 @@ Designed for the cleaning, contextualization and assessment of cytochrome c oxid
     biotools:primaryContact "Support" .
 
 <https://bio.tools/colorcells> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0659,
@@ -142923,8 +135169,28 @@ Designed for the cleaning, contextualization and assessment of cytochrome c oxid
     sc:name "ColorCells" ;
     sc:url "http://rna.sysu.edu.cn/colorcells/" .
 
+<https://bio.tools/colord> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library",
+        "Workflow" ;
+    sc:applicationSubCategory edam:topic_0196,
+        edam:topic_0605,
+        edam:topic_3673 ;
+    sc:citation <https://doi.org/10.1038/S41592-022-01432-3>,
+        "pubmed:35347321" ;
+    sc:description "A versatile compressor of third generation sequencing reads." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3436,
+        edam:operation_3472 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "CoLoRd" ;
+    sc:operatingSystem "Linux",
+        "Mac" ;
+    sc:url "https://github.com/refresh-bio/colord" .
+
 <https://bio.tools/colordecontmas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3518 ;
     sc:description "ColorDecontmas is a collection of ImageJ macros (scripts) for performing color deconvolution and analysis of immunohistochemistry (IHC) staining on tissue microarray (TMA) images" ;
@@ -142938,7 +135204,7 @@ Designed for the cleaning, contextualization and assessment of cytochrome c oxid
     sc:url "http://colordecontmas.sourceforge.net/" .
 
 <https://bio.tools/colordistance> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3293,
         edam:topic_3382 ;
@@ -142960,44 +135226,16 @@ Designed for the cleaning, contextualization and assessment of cytochrome c oxid
     sc:url "https://cran.r-project.org/package=colordistance" ;
     biotools:primaryContact "Hannah Weller" .
 
-<https://bio.tools/colordistance_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0621,
-        edam:topic_3293,
-        edam:topic_3382 ;
-    sc:citation <https://doi.org/10.7287/PEERJ.PREPRINTS.26487V2> ;
-    sc:description """Quantitative color profiling of digital images with earth mover's distance using the R package colordistance.
-
-Distance metrics for image color similarity.
-
-Websites for you and your projects, hosted directly from your GitHub repository. Just edit, push, and your changes are live.
-
-Websites for you and your projects.
-
-February 6, 2019: Our methods paper for colordistance is out in PeerJ! Find it here: https://peerj.com/articles/6398/.
-
-An R package with functions for quantifying the differences between colorful objects.
-
-July 10, 2018: Added scatter3dclusters function to plot clusters in color space, scaled according to their size and colored according to their color.
-
-Hosted directly from your GitHub repository.
-
-||| NAME EQUAL TO (PUB. DIFFERENT) bio.tools/colordistance""" ;
-    sc:featureList edam:operation_3096,
-        edam:operation_3443,
-        edam:operation_3799 ;
-    sc:name "colordistance_autogenerated" ;
-    sc:url "http://github.io/colordistance/" .
-
 <https://bio.tools/colorgff> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2305" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1975" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1093/nar/gkw343>,
@@ -143014,7 +135252,7 @@ Hosted directly from your GitHub repository.
     biotools:primaryContact "Galaxy Support Team" .
 
 <https://bio.tools/colosseum> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Script" ;
     sc:applicationSubCategory edam:topic_3277 ;
@@ -143028,7 +135266,7 @@ Hosted directly from your GitHub repository.
     sc:url "https://github.com/pachterlab/colosseum" .
 
 <https://bio.tools/colour-deconvolution> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_2830,
         edam:topic_3382,
@@ -143043,7 +135281,7 @@ Hosted directly from your GitHub repository.
     sc:url "https://blog.bham.ac.uk/intellimic/g-landini-software/colour-deconvolution-2/" .
 
 <https://bio.tools/colour-normalisation-pca> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -143063,7 +135301,7 @@ Hosted directly from your GitHub repository.
     biotools:primaryContact "DC" .
 
 <https://bio.tools/colour-normalization> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -143081,7 +135319,7 @@ Hosted directly from your GitHub repository.
     biotools:primaryContact "Niels Schurink" .
 
 <https://bio.tools/coloweb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0622,
@@ -143100,7 +135338,7 @@ Hosted directly from your GitHub repository.
     biotools:primaryContact "Support" .
 
 <https://bio.tools/colt-cancer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0607,
@@ -143120,7 +135358,7 @@ Hosted directly from your GitHub repository.
     biotools:primaryContact "Jason Moffat" .
 
 <https://bio.tools/coltapp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3318,
@@ -143138,7 +135376,7 @@ Hosted directly from your GitHub repository.
     sc:url "https://coltapp.github.io/" .
 
 <https://bio.tools/columba> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0102,
@@ -143161,7 +135399,7 @@ Hosted directly from your GitHub repository.
     sc:url "https://github.com/biointec/columba" .
 
 <https://bio.tools/coma> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0160,
@@ -143185,7 +135423,7 @@ Hosted directly from your GitHub repository.
     biotools:primaryContact "Česlovas Venclovas" .
 
 <https://bio.tools/coman> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3174,
@@ -143205,7 +135443,7 @@ Hosted directly from your GitHub repository.
     biotools:primaryContact "Yueqiong Ni" .
 
 <https://bio.tools/combat-harmonization> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3384,
@@ -143221,7 +135459,7 @@ Hosted directly from your GitHub repository.
     sc:url "https://github.com/Jfortin1/ComBatHarmonization" .
 
 <https://bio.tools/combat-tb_workbench> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0769,
@@ -143236,7 +135474,7 @@ Hosted directly from your GitHub repository.
     sc:url "https://github.com/COMBAT-TB/irida-galaxy-deploy" .
 
 <https://bio.tools/combenefit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0202,
         edam:topic_3375,
@@ -143255,7 +135493,7 @@ Hosted directly from your GitHub repository.
     biotools:primaryContact "Giovanni Y. Di Verloi" .
 
 <https://bio.tools/combfunc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0121,
@@ -143271,26 +135509,54 @@ Hosted directly from your GitHub repository.
     sc:url "http://www.sbg.bio.ic.ac.uk/~mwass/combfunc/" ;
     biotools:primaryContact "Mark Wass" .
 
+<https://bio.tools/combind> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0749,
+        edam:topic_3169,
+        edam:topic_3534 ;
+    sc:citation <https://doi.org/10.1186/S12859-022-04734-7>,
+        "pmcid:PMC9166390",
+        "pubmed:35659235" ;
+    sc:description "Modeling binding specificities of transcription factor pairs with random forests." ;
+    sc:featureList edam:operation_0363,
+        edam:operation_0445,
+        edam:operation_0452,
+        edam:operation_2575 ;
+    sc:license "Not licensed" ;
+    sc:name "ComBind" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/AnniAleksandra/ComBind" .
+
 <https://bio.tools/combiroc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
-    sc:additionalType "Web application" ;
-    sc:applicationSubCategory edam:topic_0121,
-        edam:topic_0622,
-        edam:topic_3308,
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_2229,
+        edam:topic_3170,
         edam:topic_3360 ;
-    sc:citation <https://doi.org/10.1038/srep45477> ;
-    sc:description "Interactive web tool for selecting accurate marker combinations of omics data." ;
-    sc:featureList edam:operation_0282 ;
-    sc:name "CombiROC" ;
+    sc:citation <https://doi.org/10.1038/srep45477>,
+        <https://doi.org/10.1101/2022.01.17.476603>,
+        "pmcid:PMC5371980",
+        "pubmed:28358118" ;
+    sc:description "Combinatorial selection of biomarkers to optimize gene signatures in diagnostics and single cell applications." ;
+    sc:featureList edam:operation_0335,
+        edam:operation_0337,
+        edam:operation_3223 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "combiROC" ;
     sc:operatingSystem "Linux",
         "Mac",
         "Windows" ;
-    sc:softwareHelp <http://combiroc.eu/> ;
-    sc:url "http://combiroc.eu/" ;
-    biotools:primaryContact "Saveria Mazzara" .
+    sc:softwareHelp <https://cloud.r-project.org/web/packages/combiroc/combiroc.pdf>,
+        <https://cloud.r-project.org/web/packages/combiroc/vignettes/combiroc_standard.html> ;
+    sc:url "http://combiroc.eu/" .
 
 <https://bio.tools/comboltr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2640,
@@ -143305,8 +135571,29 @@ Hosted directly from your GitHub repository.
     sc:softwareHelp <https://github.com/aalto-ics-kepaco/ComboLTR/blob/main/readme.pdf> ;
     sc:url "https://github.com/aalto-ics-kepaco/ComboLTR" .
 
+<https://bio.tools/combpdx> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application",
+        "Workbench" ;
+    sc:applicationSubCategory edam:topic_0202,
+        edam:topic_2269,
+        edam:topic_2640,
+        edam:topic_3360,
+        edam:topic_3379 ;
+    sc:citation <https://doi.org/10.1101/2021.10.19.464994> ;
+    sc:description "A statistical framework for evaluating drug synergism in patient-derived xenografts." ;
+    sc:featureList edam:operation_3435,
+        edam:operation_3658,
+        edam:operation_4009 ;
+    sc:isAccessibleForFree true ;
+    sc:name "combPDX" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://licaih.shinyapps.io/CombPDX/" .
+
 <https://bio.tools/combrex> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0085,
@@ -143321,8 +135608,32 @@ Hosted directly from your GitHub repository.
     sc:url "http://combrex.bu.edu" ;
     biotools:primaryContact "COMBREX Support" .
 
+<https://bio.tools/combsafe> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workflow" ;
+    sc:applicationSubCategory edam:topic_0218,
+        edam:topic_0622,
+        edam:topic_0749,
+        edam:topic_3169,
+        edam:topic_3295 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAB815>,
+        "pubmed:34864898" ;
+    sc:description "Combinatorial and Semantic Analysis of Functional Elements (CombSAFE). It is a flexible computational method to identify combinations of static and dynamic functional elements genome-wide, or in a specific genomic region, and how they change across semantically annotated biological conditions." ;
+    sc:featureList edam:operation_2421,
+        edam:operation_2422,
+        edam:operation_3222,
+        edam:operation_3501,
+        edam:operation_3891 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "CombSAFE" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/DEIB-GECO/CombSAFE" .
+
 <https://bio.tools/combsecretomics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0202,
@@ -143345,7 +135656,7 @@ Hosted directly from your GitHub repository.
     sc:url "https://github.com/EffieChantzi/COMBSecretomics" .
 
 <https://bio.tools/come> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1093/nar/gkw798>,
@@ -143362,7 +135673,7 @@ Hosted directly from your GitHub repository.
     biotools:primaryContact "Long Hu" .
 
 <https://bio.tools/comeback> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0632,
@@ -143378,8 +135689,30 @@ Hosted directly from your GitHub repository.
     sc:name "CoMeBack" ;
     sc:url "https://bitbucket.org/flopflip/comeback" .
 
+<https://bio.tools/coment> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0089,
+        edam:topic_0625,
+        edam:topic_0634,
+        edam:topic_2259,
+        edam:topic_3068 ;
+    sc:citation <https://doi.org/10.1016/J.JMB.2022.167568>,
+        "pubmed:35662459" ;
+    sc:description "Significant co-mentions in the scientific literature between diseases, biological functions and clinical signs." ;
+    sc:featureList edam:operation_2422,
+        edam:operation_3349,
+        edam:operation_3625 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "CoMent" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://sysbiol.cnb.csic.es/CoMent" .
+
 <https://bio.tools/comer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -143395,7 +135728,7 @@ Hosted directly from your GitHub repository.
     biotools:primaryContact "Mindaugas Margelevicius" .
 
 <https://bio.tools/comer2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -143418,14 +135751,14 @@ COMER2, a cross-platform software package for protein remote homology search and
 
 <https://bio.tools/comet> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3654" ;
+            sc:name "Mass spectrometry spectra" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_3655" ;
+            sc:name "Peptide identification" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -143447,7 +135780,7 @@ COMER2, a cross-platform software package for protein remote homology search and
     biotools:primaryContact "Comet's Google group" .
 
 <https://bio.tools/comet-cell> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3295,
@@ -143464,7 +135797,7 @@ COMER2, a cross-platform software package for protein remote homology search and
     sc:url "https://github.com/leonardlab/COMET" .
 
 <https://bio.tools/comet-universe> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0623,
@@ -143487,7 +135820,7 @@ COMER2, a cross-platform software package for protein remote homology search and
     biotools:primaryContact "CoMet Support" .
 
 <https://bio.tools/comet_visualisation> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_3173,
@@ -143507,7 +135840,7 @@ COMER2, a cross-platform software package for protein remote homology search and
     biotools:primaryContact "Support" .
 
 <https://bio.tools/cometa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0623,
@@ -143526,7 +135859,7 @@ COMER2, a cross-platform software package for protein remote homology search and
     biotools:primaryContact "Jolanta Kawulok" .
 
 <https://bio.tools/comethyl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3063,
         edam:topic_3173,
@@ -143546,7 +135879,7 @@ COMER2, a cross-platform software package for protein remote homology search and
     sc:url "http://github.com/cemordaunt/comethyl" .
 
 <https://bio.tools/comets-analytics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0091,
@@ -143564,7 +135897,7 @@ COMER2, a cross-platform software package for protein remote homology search and
     sc:url "https://www.comets-analytics.org" .
 
 <https://bio.tools/comir> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0659,
@@ -143584,8 +135917,30 @@ COMER2, a cross-platform software package for protein remote homology search and
     sc:url "http://www.benoslab.pitt.edu/comir/" ;
     biotools:primaryContact "ComiR Support" .
 
+<https://bio.tools/comm-ssup4_sup> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_0625,
+        edam:topic_3308,
+        edam:topic_3337,
+        edam:topic_3517 ;
+    sc:citation <https://doi.org/10.3389/FGENE.2021.704538>,
+        "pmcid:PMC8488198",
+        "pubmed:34616426" ;
+    sc:description "Collaborative mixed model to dissecting genetic contributions to complex traits by leveraging regulatory information." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3196,
+        edam:operation_3791 ;
+    sc:isAccessibleForFree true ;
+    sc:name "CoMM-Ssup4 sup" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/gordonliu810822/CoMM" .
+
 <https://bio.tools/comma> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0102,
@@ -143605,14 +135960,14 @@ COMER2, a cross-platform software package for protein remote homology search and
 
 <https://bio.tools/commet> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0848" ;
-            sc:name "Raw sequence" ;
-            sc:sameAs "http://edamontology.org/data_0848" ] ;
+            sc:additionalType "http://edamontology.org/data_0848" ;
+            sc:encodingFormat "http://edamontology.org/format_2182" ;
+            sc:name "Raw sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1636" ;
-            sc:name "Heat map" ;
-            sc:sameAs "http://edamontology.org/data_1636" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1636" ;
+            sc:encodingFormat "http://edamontology.org/format_2333" ;
+            sc:name "Heat map" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1109/BIBM.2014.6999135> ;
@@ -143628,7 +135983,7 @@ COMER2, a cross-platform software package for protein remote homology search and
     biotools:primaryContact "Pierre Peterlongo" .
 
 <https://bio.tools/commet-metabolic> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0602,
@@ -143646,7 +136001,7 @@ COMER2, a cross-platform software package for protein remote homology search and
     sc:url "https://github.com/macsbio/commet" .
 
 <https://bio.tools/commodar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0218,
@@ -143663,7 +136018,7 @@ COMER2, a cross-platform software package for protein remote homology search and
     sc:url "https://github.com/jae-hyun-lee/commodar" .
 
 <https://bio.tools/community-simulator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3050,
@@ -143682,18 +136037,16 @@ COMER2, a cross-platform software package for protein remote homology search and
 
 <https://bio.tools/comodo> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3148" ;
-            sc:name "Gene family report" ;
-            sc:sameAs "http://edamontology.org/data_3148" ],
+            sc:additionalType "http://edamontology.org/data_3148" ;
+            sc:name "Gene family report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3111" ;
-            sc:name "Processed microarray data" ;
-            sc:sameAs "http://edamontology.org/data_3111" ] ;
+            sc:additionalType "http://edamontology.org/data_3111" ;
+            sc:name "Processed microarray data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3148" ;
-            sc:name "Gene family report" ;
-            sc:sameAs "http://edamontology.org/data_3148" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3148" ;
+            sc:encodingFormat "http://edamontology.org/format_3468" ;
+            sc:name "Gene family report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0797 ;
     sc:citation <https://doi.org/10.1093/nar/gkq1275> ;
@@ -143707,7 +136060,7 @@ COMER2, a cross-platform software package for protein remote homology search and
     sc:url "http://bioinformatics.intec.ugent.be/kmarchal/Supplementary_Information_Zarrineh_2010/comodo/index.html" .
 
 <https://bio.tools/comorbidity> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3376,
@@ -143724,7 +136077,7 @@ COMER2, a cross-platform software package for protein remote homology search and
     biotools:primaryContact "Laura Furlong" .
 
 <https://bio.tools/compacta> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0780,
@@ -143742,24 +136095,39 @@ COMER2, a cross-platform software package for protein remote homology search and
     sc:name "Compacta" ;
     sc:url "https://github.com/bioCompU/Compacta" .
 
+<https://bio.tools/compairr> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_3168,
+        edam:topic_3382,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1101/2021.10.30.466600> ;
+    sc:description "CompAIRR is a command line tool to compare two sets of adaptive immune receptor repertoires and compute their overlap. It can also identify which sequences are present in which repertoires." ;
+    sc:featureList edam:operation_0291 ;
+    sc:isAccessibleForFree true ;
+    sc:license "AGPL-3.0" ;
+    sc:name "CompAIRR" ;
+    sc:operatingSystem "Linux",
+        "Mac" ;
+    sc:url "https://github.com/uio-bmi/compairr" .
+
 <https://bio.tools/comparative_genometrics> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2787" ;
-            sc:name "NCBI genome accession" ;
-            sc:sameAs "http://edamontology.org/data_2787" ],
+            sc:additionalType "http://edamontology.org/data_2787" ;
+            sc:name "NCBI genome accession" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2787" ;
-            sc:name "NCBI genome accession" ;
-            sc:sameAs "http://edamontology.org/data_2787" ] ;
+            sc:additionalType "http://edamontology.org/data_2787" ;
+            sc:name "NCBI genome accession" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3128" ;
-            sc:name "Nucleic acid structure report" ;
-            sc:sameAs "http://edamontology.org/data_3128" ],
+            sc:additionalType "http://edamontology.org/data_3128" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Nucleic acid structure report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3128" ;
-            sc:name "Nucleic acid structure report" ;
-            sc:sameAs "http://edamontology.org/data_3128" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3128" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Nucleic acid structure report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0654,
@@ -143774,10 +136142,10 @@ COMER2, a cross-platform software package for protein remote homology search and
 
 <https://bio.tools/compare_taxofile> a sc:SoftwareApplication ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0637 ;
     sc:citation <https://doi.org/10.1093/nar/gkw343>,
@@ -143794,7 +136162,7 @@ COMER2, a cross-platform software package for protein remote homology search and
     biotools:primaryContact "Galaxy Support Team" .
 
 <https://bio.tools/comparem> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:description "CompareM i a toolbox for comparative genomics." ;
     sc:license "GPL-3.0" ;
@@ -143805,14 +136173,14 @@ COMER2, a cross-platform software package for protein remote homology search and
 
 <https://bio.tools/comparems2> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0953" ;
-            sc:name "Version information" ;
-            sc:sameAs "http://edamontology.org/data_0953" ] ;
+            sc:additionalType "http://edamontology.org/data_0953" ;
+            sc:encodingFormat "http://edamontology.org/format_3651" ;
+            sc:name "Version information" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0953" ;
-            sc:name "Version information" ;
-            sc:sameAs "http://edamontology.org/data_0953" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0953" ;
+            sc:encodingFormat "http://edamontology.org/format_3651" ;
+            sc:name "Version information" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0121,
@@ -143836,58 +136204,58 @@ COMER2, a cross-platform software package for protein remote homology search and
 
 <https://bio.tools/compareoverlapping> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2306" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2306" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1975" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_3003" ;
+            sc:name "Annotation track" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2305" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1975" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2305" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
+            sc:name "Sequence trace" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_3003" ;
+            sc:name "Annotation track" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ] ;
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
+            sc:name "Sequence trace" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1975" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0749 ;
     sc:citation <https://doi.org/10.1093/nar/gkw343>,
@@ -143905,42 +136273,42 @@ COMER2, a cross-platform software package for protein remote homology search and
 
 <https://bio.tools/compareoverlapping_parallel> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2305" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2306" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1975" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_3003" ;
+            sc:name "Annotation track" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ] ;
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
+            sc:name "Sequence trace" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0622 ;
@@ -143959,58 +136327,58 @@ COMER2, a cross-platform software package for protein remote homology search and
 
 <https://bio.tools/compareoverlappingsmallquery> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
+            sc:name "Sequence trace" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
+            sc:name "Sequence trace" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2306" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_3003" ;
+            sc:name "Annotation track" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1975" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ],
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_3003" ;
+            sc:name "Annotation track" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1975" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2305" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2306" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2305" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1975" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1093/nar/gkw343>,
@@ -144028,58 +136396,58 @@ COMER2, a cross-platform software package for protein remote homology search and
 
 <https://bio.tools/compareoverlappingsmallref> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_3003" ;
+            sc:name "Annotation track" ],
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-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2306" ;
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-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1975" ;
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-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1975" ;
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-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
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-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
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+            sc:additionalType "http://edamontology.org/data_3002" ;
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-            sc:name "Annotation track" ;
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+            sc:additionalType "http://edamontology.org/data_0006" ;
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+            sc:additionalType "http://edamontology.org/data_0924" ;
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-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
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+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
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         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1975" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1093/nar/gkw343>,
@@ -144096,7 +136464,7 @@ COMER2, a cross-platform software package for protein remote homology search and
     biotools:primaryContact "Galaxy Support Team" .
 
 <https://bio.tools/compareprospector> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0203,
@@ -144117,14 +136485,12 @@ COMER2, a cross-platform software package for protein remote homology search and
 
 <https://bio.tools/compartments> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1025" ;
-            sc:name "Gene identifier" ;
-            sc:sameAs "http://edamontology.org/data_1025" ] ;
+            sc:additionalType "http://edamontology.org/data_1025" ;
+            sc:name "Gene identifier" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1176" ;
-            sc:name "GO concept ID" ;
-            sc:sameAs "http://edamontology.org/data_1176" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1176" ;
+            sc:name "GO concept ID" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0140,
@@ -144144,7 +136510,7 @@ COMER2, a cross-platform software package for protein remote homology search and
     biotools:primaryContact "Lars Juhl Jensen" .
 
 <https://bio.tools/compartor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3292 ;
     sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAB058>,
@@ -144157,7 +136523,7 @@ COMER2, a cross-platform software package for protein remote homology search and
     sc:url "https://pypi.org/project/compartor/" .
 
 <https://bio.tools/compass> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0804,
@@ -144176,7 +136542,7 @@ COMER2, a cross-platform software package for protein remote homology search and
     biotools:primaryContact "Greg Finak" .
 
 <https://bio.tools/compass_sim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3056,
         edam:topic_3168,
@@ -144194,14 +136560,14 @@ COMER2, a cross-platform software package for protein remote homology search and
 
 <https://bio.tools/compassxport> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3245" ;
+            sc:name "Mass spectrometry spectra" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3654" ;
+            sc:name "Mass spectrometry spectra" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -144211,7 +136577,7 @@ COMER2, a cross-platform software package for protein remote homology search and
     sc:url "https://www.bruker.com/service/support-upgrades/software-downloads/mass-spectrometry.html" .
 
 <https://bio.tools/compcoder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -144230,27 +136596,8 @@ COMER2, a cross-platform software package for protein remote homology search and
     sc:url "http://bioconductor.org/packages/release/bioc/html/compcodeR.html" ;
     biotools:primaryContact <http://orcid.org/0000-0003-3833-2169> .
 
-<https://bio.tools/compendia> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0610,
-        edam:topic_2269,
-        edam:topic_3303,
-        edam:topic_3372,
-        edam:topic_3810 ;
-    sc:citation <https://doi.org/10.7287/PEERJ.PREPRINTS.3192V2> ;
-    sc:description """Packaging data analytical work reproducibly using R (and friends).
-
-Computers are a central tool in the research process, enabling complex and large scale data analysis. As computer-based research has increased in complexity, so have the challenges of ensuring that this research is reproducible. To address this challenge, we review the concept of the research compendium as a solution for providing a standard and easily recognisable way for organising the digital materials of a research project to enable other researchers to inspect, reproduce, and extend the research. We investigate how the structure and tooling of software packages of the R programming language are being used to produce research compendia in a variety of disciplines. We also describe how software engineering tools and services are being used by researchers to streamline working with research compendia.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'reproducibly', 'tooling', 'recognisable', 'friends'""" ;
-    sc:featureList edam:operation_3435,
-        edam:operation_3891 ;
-    sc:name "compendia" ;
-    sc:url "https://doi.org/10.7287/PEERJ.PREPRINTS.3192V2" .
-
 <https://bio.tools/compendiumdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0219,
         edam:topic_0622,
@@ -144268,7 +136615,7 @@ Computers are a central tool in the research process, enabling complex and large
     biotools:primaryContact "Umesh Nandal" .
 
 <https://bio.tools/compepitools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3173 ;
@@ -144289,7 +136636,7 @@ Computers are a central tool in the research process, enabling complex and large
     biotools:primaryContact <http://orcid.org/0000-0002-4650-8745> .
 
 <https://bio.tools/compgo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203 ;
@@ -144308,7 +136655,7 @@ Computers are a central tool in the research process, enabling complex and large
     biotools:primaryContact "Ashley J. Waardenberg" .
 
 <https://bio.tools/compi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3372,
@@ -144327,14 +136674,14 @@ Computers are a central tool in the research process, enabling complex and large
 
 <https://bio.tools/compil> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Mass spectrometry spectra" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Peptide identification" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121 ;
     sc:citation <https://doi.org/10.1021/acs.jproteome.8b00722>,
@@ -144350,8 +136697,29 @@ Computers are a central tool in the research process, enabling complex and large
     sc:softwareVersion "2.0" ;
     sc:url "https://github.com/robinparky/prolucidComPIL" .
 
+<https://bio.tools/compile> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script",
+        "Workflow" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0625,
+        edam:topic_0659,
+        edam:topic_0769,
+        edam:topic_3517 ;
+    sc:citation <https://doi.org/10.1186/S12870-022-03668-9>,
+        "pmcid:PMC9250234",
+        "pubmed:35778686" ;
+    sc:description "A computational pipeline \"COMPILE\" to accelerate identification and annotation of candidate genes in Genome-Wide Association Studies." ;
+    sc:featureList edam:operation_0282,
+        edam:operation_0314,
+        edam:operation_3196,
+        edam:operation_3232 ;
+    sc:license "Not licensed" ;
+    sc:name "COMPILE" ;
+    sc:url "https://github.com/mjacksonhill/COMPILE_Hill_et_al._2022_BMC_Plant_Biology" .
+
 <https://bio.tools/complexcontact> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0128 ;
@@ -144363,7 +136731,7 @@ Computers are a central tool in the research process, enabling complex and large
     sc:url "http://raptorx2.uchicago.edu/ComplexContact/" .
 
 <https://bio.tools/complexfinder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0154,
@@ -144383,14 +136751,14 @@ Computers are a central tool in the research process, enabling complex and large
 
 <https://bio.tools/complexheatmap> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2082" ;
-            sc:name "Matrix" ;
-            sc:sameAs "http://edamontology.org/data_2082" ] ;
+            sc:additionalType "http://edamontology.org/data_2082" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Matrix" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1636" ;
-            sc:name "Heat map" ;
-            sc:sameAs "http://edamontology.org/data_1636" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1636" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Heat map" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0092 ;
@@ -144414,7 +136782,7 @@ multiple heatmaps and supports various annotation graphics.""" ;
     biotools:primaryContact <http://orcid.org/0000-0002-7395-8709> .
 
 <https://bio.tools/complexplus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0605,
@@ -144429,22 +136797,20 @@ multiple heatmaps and supports various annotation graphics.""" ;
 
 <https://bio.tools/compluyeast2dpage> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3021" ;
-            sc:name "UniProt accession" ;
-            sc:sameAs "http://edamontology.org/data_3021" ],
+            sc:additionalType "http://edamontology.org/data_3021" ;
+            sc:name "UniProt accession" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0989" ;
-            sc:name "Protein identifier" ;
-            sc:sameAs "http://edamontology.org/data_0989" ] ;
+            sc:additionalType "http://edamontology.org/data_0989" ;
+            sc:name "Protein identifier" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2531" ;
-            sc:name "Experiment report" ;
-            sc:sameAs "http://edamontology.org/data_2531" ],
+            sc:additionalType "http://edamontology.org/data_2531" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Experiment report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2531" ;
-            sc:name "Experiment report" ;
-            sc:sameAs "http://edamontology.org/data_2531" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2531" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Experiment report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0121 ;
     sc:description "A two-dimensional polyacrilamide gel electrophoresis federated database." ;
@@ -144454,7 +136820,7 @@ multiple heatmaps and supports various annotation graphics.""" ;
     sc:url "http://compluyeast2dpage.dacya.ucm.es/" .
 
 <https://bio.tools/compmap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0203,
@@ -144473,10 +136839,10 @@ multiple heatmaps and supports various annotation graphics.""" ;
 
 <https://bio.tools/compmerge> a sc:SoftwareApplication ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:encodingFormat "http://edamontology.org/format_2306" ;
+            sc:name "Sequence features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:author "Sarah Djebali" ;
@@ -144492,7 +136858,7 @@ multiple heatmaps and supports various annotation graphics.""" ;
     biotools:primaryContact "Sarah Djebali" .
 
 <https://bio.tools/compo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654 ;
     sc:description "Compo is a software for composite motif discovery using discrete models." ;
@@ -144503,16 +136869,41 @@ multiple heatmaps and supports various annotation graphics.""" ;
         "Windows" ;
     sc:url "http://tare.medisin.ntnu.no/compo/index.php" .
 
+<https://bio.tools/compodynamics> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Bioinformatics portal",
+        "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0099,
+        edam:topic_0154,
+        edam:topic_0157,
+        edam:topic_0203,
+        edam:topic_0621 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAB979>,
+        "pmcid:PMC8728180",
+        "pubmed:34718745" ;
+    sc:description "Sequence composition dynamics of genes and genomes." ;
+    sc:featureList edam:operation_0284,
+        edam:operation_0310,
+        edam:operation_2421,
+        edam:operation_2962,
+        edam:operation_3454 ;
+    sc:isAccessibleForFree true ;
+    sc:name "CompoDynamics" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://ngdc.cncb.ac.cn/compodynamics/help/> ;
+    sc:url "https://ngdc.cncb.ac.cn/compodynamics/" .
+
 <https://bio.tools/compomics-rover> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ] ;
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:name "Mass spectrometry data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:name "Image" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121 ;
     sc:citation <https://doi.org/10.1002/pmic.200900379> ;
@@ -144528,14 +136919,12 @@ multiple heatmaps and supports various annotation graphics.""" ;
 
 <https://bio.tools/compomics-sigpep> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ] ;
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:name "Mass spectrometry data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1355" ;
-            sc:name "Protein signature" ;
-            sc:sameAs "http://edamontology.org/data_1355" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1355" ;
+            sc:name "Protein signature" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0121 ;
     sc:citation <https://doi.org/10.1002/pmic.201100566> ;
@@ -144553,18 +136942,15 @@ multiple heatmaps and supports various annotation graphics.""" ;
 
 <https://bio.tools/compomics-utilities> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ] ;
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:name "Mass spectrometry data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ],
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:name "Image" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:name "Mass spectrometry data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0121 ;
@@ -144583,8 +136969,29 @@ multiple heatmaps and supports various annotation graphics.""" ;
     sc:url "http://compomics.github.io/projects/compomics-utilities.html" ;
     biotools:primaryContact "Martens Lennart" .
 
+<https://bio.tools/compositeview> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Script" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0602,
+        edam:topic_3315,
+        edam:topic_3382,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.3390/BDCC6020066>,
+        "pmcid:PMC9281616",
+        "pubmed:35847767" ;
+    sc:description "This software is designed to visualize data, specifically combined scores data, utilizing graph theory and network analysis concepts." ;
+    sc:featureList edam:operation_1812,
+        edam:operation_3216,
+        edam:operation_3436,
+        edam:operation_3925 ;
+    sc:license "Not licensed" ;
+    sc:name "CompositeView" ;
+    sc:url "https://github.com/pathology-dynamics/composite_view" .
+
 <https://bio.tools/composition_profiler> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154 ;
     sc:citation <https://doi.org/10.1186/1471-2105-8-211>,
@@ -144603,7 +137010,7 @@ multiple heatmaps and supports various annotation graphics.""" ;
     sc:url "http://www.cprofiler.org/" .
 
 <https://bio.tools/compounddb4j> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2258,
@@ -144620,7 +137027,7 @@ multiple heatmaps and supports various annotation graphics.""" ;
     sc:url "https://github.com/ambf0632/CompoundDB4j" .
 
 <https://bio.tools/compoundhetvip> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0625,
@@ -144638,7 +137045,7 @@ multiple heatmaps and supports various annotation graphics.""" ;
     sc:url "https://github.com/dmiller903/CompoundHetVIP" .
 
 <https://bio.tools/compphy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0797,
         edam:topic_3056,
@@ -144657,7 +137064,7 @@ multiple heatmaps and supports various annotation graphics.""" ;
     biotools:primaryContact "Contact form" .
 
 <https://bio.tools/comprehengsive> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:description "compreheNGSive is an interactive visualization of the end results of the next-generation sequencing pipeline." ;
@@ -144670,7 +137077,7 @@ multiple heatmaps and supports various annotation graphics.""" ;
     biotools:primaryContact "Alex Bigelow" .
 
 <https://bio.tools/compret> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0209,
         edam:topic_0749,
@@ -144684,7 +137091,7 @@ multiple heatmaps and supports various annotation graphics.""" ;
     sc:url "https://github.com/fullswing/CompRet" .
 
 <https://bio.tools/comprior> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -144709,14 +137116,12 @@ multiple heatmaps and supports various annotation graphics.""" ;
 
 <https://bio.tools/compseq> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ],
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1261" ;
-            sc:name "Sequence composition report" ;
-            sc:sameAs "http://edamontology.org/data_1261" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1261" ;
+            sc:name "Sequence composition report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0157 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -144746,7 +137151,7 @@ multiple heatmaps and supports various annotation graphics.""" ;
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/compseq.html" .
 
 <https://bio.tools/compsra> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0659,
@@ -144768,10 +137173,9 @@ multiple heatmaps and supports various annotation graphics.""" ;
 
 <https://bio.tools/compss> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0949" ;
-            sc:name "Workflow metadata" ;
-            sc:sameAs "http://edamontology.org/data_0949" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0949" ;
+            sc:name "Workflow metadata" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_3372 ;
     sc:citation <https://doi.org/10.1007/s10723-013-9272-5>,
@@ -144797,7 +137201,7 @@ COMPSs workflows portable to HPC and Cloud without change""" ;
         "Rosa M. Badia  - Barcelona Supercomputing Center" .
 
 <https://bio.tools/comptox_chemistry_dashboard> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2258,
         edam:topic_3071,
@@ -144814,7 +137218,7 @@ COMPSs workflows portable to HPC and Cloud without change""" ;
     biotools:primaryContact "Antony J. Williams" .
 
 <https://bio.tools/compugut> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3407,
         edam:topic_3524 ;
@@ -144830,7 +137234,7 @@ COMPSs workflows portable to HPC and Cloud without change""" ;
     biotools:primaryContact "Arun S. Moorthy" .
 
 <https://bio.tools/compute-pwm-display-sequencelogo-frequency> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_3070,
@@ -144848,7 +137252,7 @@ COMPSs workflows portable to HPC and Cloud without change""" ;
     biotools:primaryContact "Michael Chan" .
 
 <https://bio.tools/compute_pi_mw> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -144866,14 +137270,14 @@ COMPSs workflows portable to HPC and Cloud without change""" ;
 
 <https://bio.tools/compute_sequence_length> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0080,
@@ -144893,58 +137297,58 @@ COMPSs workflows portable to HPC and Cloud without change""" ;
 
 <https://bio.tools/computecoverage> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1975" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2305" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_3003" ;
+            sc:name "Annotation track" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1975" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
+            sc:name "Sequence trace" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2306" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2306" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2305" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ],
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_3003" ;
+            sc:name "Annotation track" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ] ;
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
+            sc:name "Sequence trace" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1975" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1093/nar/gkw343>,
@@ -144961,7 +137365,7 @@ COMPSs workflows portable to HPC and Cloud without change""" ;
     biotools:primaryContact "Galaxy Support Team" .
 
 <https://bio.tools/computel> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0160,
@@ -144979,7 +137383,7 @@ COMPSs workflows portable to HPC and Cloud without change""" ;
     biotools:primaryContact "Arsen Arakelyan" .
 
 <https://bio.tools/comsin> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0157,
@@ -145002,7 +137406,7 @@ COMPSs workflows portable to HPC and Cloud without change""" ;
     biotools:primaryContact "Michail Yu. Lobanov" .
 
 <https://bio.tools/comsol-simplifier> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3382 ;
     sc:description "This small GUI program can simplify repeated COMSOL simulations." ;
@@ -145018,22 +137422,22 @@ COMPSs workflows portable to HPC and Cloud without change""" ;
 
 <https://bio.tools/comspari> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ],
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Mass spectrometry spectra" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3650" ;
+            sc:name "Mass spectrometry spectra" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ],
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Mass spectrometry spectra" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Mass spectrometry spectra" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3172,
@@ -145053,7 +137457,7 @@ COMPSs workflows portable to HPC and Cloud without change""" ;
     sc:url "http://www.biomechanic.org/comspari" .
 
 <https://bio.tools/comsuc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_2885,
@@ -145070,7 +137474,7 @@ COMPSs workflows portable to HPC and Cloud without change""" ;
     biotools:primaryContact <https://orcid.org/0000-0003-1911-7922> .
 
 <https://bio.tools/comut> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0625 ;
@@ -145082,7 +137486,7 @@ COMPSs workflows portable to HPC and Cloud without change""" ;
     sc:url "https://github.com/vanallenlab/comut" .
 
 <https://bio.tools/conan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0176 ;
@@ -145100,7 +137504,7 @@ COMPSs workflows portable to HPC and Cloud without change""" ;
     biotools:primaryContact "Csaba Daday" .
 
 <https://bio.tools/conan-snv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_2885,
@@ -145123,7 +137527,7 @@ COMPSs workflows portable to HPC and Cloud without change""" ;
         "Sohrab P. Shah" .
 
 <https://bio.tools/conan-specificity> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0160,
@@ -145139,7 +137543,7 @@ COMPSs workflows portable to HPC and Cloud without change""" ;
     sc:url "http://bioinfo.icb.ufmg.br/conan" .
 
 <https://bio.tools/condel> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
@@ -145164,7 +137568,7 @@ COMPSs workflows portable to HPC and Cloud without change""" ;
     biotools:primaryContact "Abel González-Pérez" .
 
 <https://bio.tools/condetri> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3168,
@@ -145180,8 +137584,27 @@ COMPSs workflows portable to HPC and Cloud without change""" ;
     sc:url "http://code.google.com/p/condetri/" ;
     biotools:primaryContact "ConDeTri team" .
 
+<https://bio.tools/condis> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3068,
+        edam:topic_3303,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC461>,
+        "pubmed:35801895" ;
+    sc:description "CondiS is a web tool with user-friendly GUI to address the censoring problem in machine learning-based survival analysis." ;
+    sc:featureList edam:operation_3503,
+        edam:operation_3557 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "CondiS" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://biostatistics.mdanderson.org/shinyapps/CondiS/" .
+
 <https://bio.tools/conditional_colocalization> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0602,
@@ -145200,7 +137623,7 @@ COMPSs workflows portable to HPC and Cloud without change""" ;
     sc:url "https://github.com/kjaqaman/conditionalColoc" .
 
 <https://bio.tools/conditional_molecule_generator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2258,
         edam:topic_3373,
@@ -145219,14 +137642,13 @@ COMPSs workflows portable to HPC and Cloud without change""" ;
 
 <https://bio.tools/conditional_quantile_normalization> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3112" ;
-            sc:name "Gene expression matrix" ;
-            sc:sameAs "http://edamontology.org/data_3112" ] ;
+            sc:additionalType "http://edamontology.org/data_3112" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Gene expression matrix" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3112" ;
-            sc:name "Gene expression matrix" ;
-            sc:sameAs "http://edamontology.org/data_3112" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3112" ;
+            sc:name "Gene expression matrix" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0085 ;
     sc:author "Kasper Daniel Hansen",
@@ -145247,10 +137669,10 @@ COMPSs workflows portable to HPC and Cloud without change""" ;
 
 <https://bio.tools/condop> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Gene expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Gene expression data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3070 ;
     sc:citation <https://doi.org/10.1186/1471-2105-15-145>,
@@ -145271,7 +137693,7 @@ COMPSs workflows portable to HPC and Cloud without change""" ;
         "Roberto Tagliaferri" .
 
 <https://bio.tools/condor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_2828,
@@ -145292,7 +137714,7 @@ COMPSs workflows portable to HPC and Cloud without change""" ;
     biotools:primaryContact "Max F. Hantke" .
 
 <https://bio.tools/cone-beam-ct-simulation> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3306,
         edam:topic_3344,
@@ -145308,7 +137730,7 @@ COMPSs workflows portable to HPC and Cloud without change""" ;
     biotools:primaryContact "Deshan Yang" .
 
 <https://bio.tools/conekt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -145330,7 +137752,7 @@ COMPSs workflows portable to HPC and Cloud without change""" ;
         "Sebastian Proost" .
 
 <https://bio.tools/conet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2259 ;
     sc:author "Karoline Faust" ;
@@ -145356,7 +137778,7 @@ COMPSs workflows portable to HPC and Cloud without change""" ;
     biotools:primaryContact "Karoline Faust" .
 
 <https://bio.tools/conet_app> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_3172,
         edam:topic_3174,
@@ -145387,7 +137809,7 @@ CoNet detects significant non-random patterns of co-occurrence (copresence and m
     sc:url "http://apps.cytoscape.org/apps/conet" .
 
 <https://bio.tools/confac> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0749,
@@ -145409,7 +137831,7 @@ CoNet detects significant non-random patterns of co-occurrence (copresence and m
     biotools:primaryContact "C. S. Moreno" .
 
 <https://bio.tools/confess> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2229 ;
@@ -145427,7 +137849,7 @@ CoNet detects significant non-random patterns of co-occurrence (copresence and m
     biotools:primaryContact "Diana LOW" .
 
 <https://bio.tools/confid> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0176,
@@ -145450,7 +137872,7 @@ CoNet detects significant non-random patterns of co-occurrence (copresence and m
     sc:url "http://sbcb.inf.ufrgs.br/confid" .
 
 <https://bio.tools/confidence-intervals-auroc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:description "Various methods for estimating parametric and non-parametric confidence intervals for the AUC." ;
     sc:isAccessibleForFree true ;
@@ -145464,7 +137886,7 @@ CoNet detects significant non-random patterns of co-occurrence (copresence and m
     biotools:primaryContact "Brian Lau" .
 
 <https://bio.tools/confocalgn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3385 ;
     sc:citation <https://doi.org/10.1016/j.softx.2017.09.002> ;
@@ -145480,8 +137902,25 @@ CoNet detects significant non-random patterns of co-occurrence (copresence and m
     sc:url "https://github.com/ElsevierSoftwareX/SOFTX-D-17-00018" ;
     biotools:primaryContact "Serge Dmitrieff" .
 
+<https://bio.tools/conformer-rl> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0081,
+        edam:topic_3047,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1002/JCC.26984>,
+        "pubmed:36000759" ;
+    sc:description "Conformer-RL is an open-source Python package for applying deep reinforcement learning (RL) to the task of generating a diverse set of low-energy conformations for a single molecule. The library features a simple interface to train a deep RL conformer generation model on any covalently bonded molecule or polymer, including most drug-like molecules." ;
+    sc:featureList edam:operation_0337 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "Conformer-RL" ;
+    sc:softwareHelp <https://conformer-rl.readthedocs.io/en/latest/>,
+        <https://conformer-rl.readthedocs.io/en/latest/tutorial/install.html> ;
+    sc:url "https://github.com/ZimmermanGroup/conformer-rl" .
+
 <https://bio.tools/confortho> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3318,
@@ -145498,8 +137937,51 @@ CoNet detects significant non-random patterns of co-occurrence (copresence and m
     sc:url "https://www.mathworks.com/matlabcentral/fileexchange/24358-confortho" ;
     biotools:primaryContact "Peter Nagy" .
 
+<https://bio.tools/congas> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0099,
+        edam:topic_0625,
+        edam:topic_2269,
+        edam:topic_3295,
+        edam:topic_3308 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC143>,
+        "pubmed:35298589" ;
+    sc:description "A Bayesian method to cluster single-cell RNA sequencing data using Copy Number Alterations." ;
+    sc:featureList edam:operation_3196,
+        edam:operation_3432,
+        edam:operation_3454 ;
+    sc:license "GPL-3.0" ;
+    sc:name "CONGAS" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/caravagnalab/congas" .
+
+<https://bio.tools/congri> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0602,
+        edam:topic_3382,
+        edam:topic_3474,
+        edam:topic_3518 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAB718>,
+        "pubmed:34664632" ;
+    sc:description "ConGRI is a contrastive learning scheme based on deep Siamese CNN architecture, which identifies gene regulatory interactions from gene expression images." ;
+    sc:featureList edam:operation_1781,
+        edam:operation_2437,
+        edam:operation_3436,
+        edam:operation_3937 ;
+    sc:isAccessibleForFree true ;
+    sc:name "ConGRI" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/lugimzheng/ConGRI" .
+
 <https://bio.tools/conics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_3170,
@@ -145516,7 +137998,7 @@ CoNet detects significant non-random patterns of co-occurrence (copresence and m
     biotools:primaryContact "Aaron Diaz" .
 
 <https://bio.tools/conifer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0199,
@@ -145534,7 +138016,7 @@ CoNet detects significant non-random patterns of co-occurrence (copresence and m
     sc:url "https://github.com/LeilaBagha/Conifer" .
 
 <https://bio.tools/conjupepdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0202,
@@ -145551,7 +138033,7 @@ CoNet detects significant non-random patterns of co-occurrence (copresence and m
     sc:url "https://conjupepdb.ttk.hu/" .
 
 <https://bio.tools/conkit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -145568,7 +138050,7 @@ CoNet detects significant non-random patterns of co-occurrence (copresence and m
         "Felix Simkovic" .
 
 <https://bio.tools/connectf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -145584,7 +138066,7 @@ CoNet detects significant non-random patterns of co-occurrence (copresence and m
     sc:url "https://ConnecTF.org" .
 
 <https://bio.tools/connectome> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0602,
@@ -145602,7 +138084,7 @@ CoNet detects significant non-random patterns of co-occurrence (copresence and m
     biotools:primaryContact <https://orcid.org/0000-0002-5156-504X> .
 
 <https://bio.tools/conodictor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0160,
@@ -145623,14 +138105,14 @@ CoNet detects significant non-random patterns of co-occurrence (copresence and m
 
 <https://bio.tools/conodictor2> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3494" ;
-            sc:name "DNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3494" ] ;
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:encodingFormat "http://edamontology.org/format_2200" ;
+            sc:name "DNA sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0857" ;
-            sc:name "Sequence search results" ;
-            sc:sameAs "http://edamontology.org/data_0857" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0857" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Sequence search results" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0623 ;
     sc:author <https://orcid.org/0000-0003-4005-177X> ;
@@ -145649,7 +138131,7 @@ CoNet detects significant non-random patterns of co-occurrence (copresence and m
     biotools:primaryContact <https://orcid.org/0000-0002-9078-8844> .
 
 <https://bio.tools/conomode> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0593,
@@ -145668,14 +138150,13 @@ CoNet detects significant non-random patterns of co-occurrence (copresence and m
 
 <https://bio.tools/conoserver> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2804" ;
-            sc:name "Protein ID (ConoServer)" ;
-            sc:sameAs "http://edamontology.org/data_2804" ] ;
+            sc:additionalType "http://edamontology.org/data_2804" ;
+            sc:name "Protein ID (ConoServer)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0896" ;
-            sc:name "Protein report" ;
-            sc:sameAs "http://edamontology.org/data_0896" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0896" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Protein report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btm596>,
@@ -145694,7 +138175,7 @@ CoNet detects significant non-random patterns of co-occurrence (copresence and m
     biotools:primaryContact <http://orcid.org/0000-0003-0007-6796> .
 
 <https://bio.tools/conplex> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0128,
@@ -145718,7 +138199,7 @@ CoNet detects significant non-random patterns of co-occurrence (copresence and m
     sc:url "http://sbi.postech.ac.kr/ConPlex/" .
 
 <https://bio.tools/conplot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0128 ;
@@ -145733,7 +138214,7 @@ CoNet detects significant non-random patterns of co-occurrence (copresence and m
     sc:url "http://www.conplot.org" .
 
 <https://bio.tools/conquass> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_1317,
         edam:topic_2275 ;
@@ -145750,7 +138231,7 @@ CoNet detects significant non-random patterns of co-occurrence (copresence and m
     sc:url "http://bental.tau.ac.il/ConQuass/" .
 
 <https://bio.tools/conquer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -145768,7 +138249,7 @@ CoNet detects significant non-random patterns of co-occurrence (copresence and m
     sc:url "https://github.com/roderickslieker/CONQUER" .
 
 <https://bio.tools/conr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_3050,
@@ -145791,7 +138272,7 @@ CoNet detects significant non-random patterns of co-occurrence (copresence and m
     biotools:primaryContact "Gilles Dauby" .
 
 <https://bio.tools/conreal> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0749,
@@ -145813,7 +138294,7 @@ CoNet detects significant non-random patterns of co-occurrence (copresence and m
     biotools:primaryContact "Eigene Berezikov" .
 
 <https://bio.tools/conrel> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0625,
@@ -145833,22 +138314,18 @@ CoNet detects significant non-random patterns of co-occurrence (copresence and m
 
 <https://bio.tools/cons> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0874" ;
-            sc:name "Comparison matrix" ;
-            sc:sameAs "http://edamontology.org/data_0874" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:name "Sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
+            sc:additionalType "http://edamontology.org/data_0874" ;
+            sc:name "Comparison matrix" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0848" ;
-            sc:name "Raw sequence" ;
-            sc:sameAs "http://edamontology.org/data_0848" ],
+            sc:additionalType "http://edamontology.org/data_0848" ;
+            sc:name "Raw sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0097 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -145878,7 +138355,7 @@ CoNet detects significant non-random patterns of co-occurrence (copresence and m
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/cons.html" .
 
 <https://bio.tools/cons_ws_husar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:description "Creates a consensus from multiple alignments." ;
@@ -145889,16 +138366,38 @@ CoNet detects significant non-random patterns of co-occurrence (copresence and m
     sc:softwareVersion "1" ;
     sc:url "http://genius.embnet.dkfz-heidelberg.de/menu/hobit/embdoc/cons.html" .
 
+<https://bio.tools/consalifold> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0080,
+        edam:topic_0082,
+        edam:topic_0097,
+        edam:topic_0099,
+        edam:topic_3170 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAB738>,
+        "pubmed:34694364" ;
+    sc:description "ConsAlifold, a dynamic programming-based method that predicts the consensus secondary structure of an RNA sequence alignment." ;
+    sc:featureList edam:operation_0278,
+        edam:operation_0295,
+        edam:operation_0502,
+        edam:operation_2441,
+        edam:operation_3663 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "ConsAlifold" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/heartsh/consalifold" .
+
 <https://bio.tools/consambig> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:name "Sequence alignment" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0097 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -145927,8 +138426,38 @@ CoNet detects significant non-random patterns of co-occurrence (copresence and m
     sc:softwareVersion "r6" ;
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/consambig.html" .
 
+<https://bio.tools/conscapra07> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1384" ;
+            sc:encodingFormat "http://edamontology.org/format_1984" ;
+            sc:name "Protein sequence alignment" ] ;
+    bsc:output [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1772" ;
+            sc:name "Score" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0091,
+        edam:topic_0821,
+        edam:topic_3534 ;
+    sc:citation <https://doi.org/10.1093/bioinformatics/btm270>,
+        "pubmed:17519246" ;
+    sc:description "An online WEB application that scores residue conservation a site on a Multiple Sequence Alignment based on Jensen-Shannon Divergence, introduced by Capra and Singh." ;
+    sc:featureList edam:operation_0448,
+        edam:operation_0492,
+        edam:operation_3896,
+        edam:operation_3897 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "ConsCapra07" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://github.com/shin-kinos/cons-capra07-wasm/blob/main/README.md> ;
+    sc:softwareVersion "v1.1.0" ;
+    sc:url "https://shin-kinos.github.io/cons-capra07-wasm/" .
+
 <https://bio.tools/consemble> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0196,
@@ -145947,7 +138476,7 @@ CoNet detects significant non-random patterns of co-occurrence (copresence and m
     sc:url "http://bioinfolab.unl.edu/emlab/consemble/" .
 
 <https://bio.tools/consensus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0082,
@@ -145967,7 +138496,7 @@ CoNet detects significant non-random patterns of co-occurrence (copresence and m
     biotools:primaryContact "Stormo Laboratory" .
 
 <https://bio.tools/consensusDE> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3170,
@@ -145995,22 +138524,22 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
 
 <https://bio.tools/consensusclusterplus> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3108" ;
-            sc:name "Experimental measurement" ;
-            sc:sameAs "http://edamontology.org/data_3108" ] ;
+            sc:additionalType "http://edamontology.org/data_3108" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Experimental measurement" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ],
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_3603" ;
+            sc:name "Report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ],
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3603" ;
+            sc:name "Plot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1636" ;
-            sc:name "Heat map" ;
-            sc:sameAs "http://edamontology.org/data_1636" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1636" ;
+            sc:encodingFormat "http://edamontology.org/format_3603" ;
+            sc:name "Heat map" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -146031,7 +138560,7 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
     biotools:primaryContact "Matt Wilkerson" .
 
 <https://bio.tools/consensusov> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3308,
@@ -146054,62 +138583,58 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
 
 <https://bio.tools/consensuspathdb> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2776" ;
-            sc:name "ConsensusPathDB entity ID" ;
-            sc:sameAs "http://edamontology.org/data_2776" ],
+            sc:additionalType "http://edamontology.org/data_2776" ;
+            sc:name "ConsensusPathDB entity ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2777" ;
-            sc:name "ConsensusPathDB entity name" ;
-            sc:sameAs "http://edamontology.org/data_2777" ],
+            sc:additionalType "http://edamontology.org/data_2776" ;
+            sc:name "ConsensusPathDB entity ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2091" ;
-            sc:name "Accession" ;
-            sc:sameAs "http://edamontology.org/data_2091" ],
+            sc:additionalType "http://edamontology.org/data_2777" ;
+            sc:name "ConsensusPathDB entity name" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2776" ;
-            sc:name "ConsensusPathDB entity ID" ;
-            sc:sameAs "http://edamontology.org/data_2776" ],
+            sc:additionalType "http://edamontology.org/data_2345" ;
+            sc:name "Pathway ID (ConsensusPathDB)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2776" ;
-            sc:name "ConsensusPathDB entity ID" ;
-            sc:sameAs "http://edamontology.org/data_2776" ],
+            sc:additionalType "http://edamontology.org/data_2342" ;
+            sc:name "Pathway or network name" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2342" ;
-            sc:name "Pathway or network name" ;
-            sc:sameAs "http://edamontology.org/data_2342" ],
+            sc:additionalType "http://edamontology.org/data_2091" ;
+            sc:name "Accession" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2345" ;
-            sc:name "Pathway ID (ConsensusPathDB)" ;
-            sc:sameAs "http://edamontology.org/data_2345" ] ;
+            sc:additionalType "http://edamontology.org/data_2776" ;
+            sc:name "ConsensusPathDB entity ID" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0906" ;
-            sc:name "Protein interaction data" ;
-            sc:sameAs "http://edamontology.org/data_0906" ],
+            sc:additionalType "http://edamontology.org/data_0842" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Identifier" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0842" ;
-            sc:name "Identifier" ;
-            sc:sameAs "http://edamontology.org/data_0842" ],
+            sc:additionalType "http://edamontology.org/data_0906" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Protein interaction data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0906" ;
-            sc:name "Protein interaction data" ;
-            sc:sameAs "http://edamontology.org/data_0906" ],
+            sc:additionalType "http://edamontology.org/data_0906" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Protein interaction data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0905" ;
-            sc:name "Protein interaction raw data" ;
-            sc:sameAs "http://edamontology.org/data_0905" ],
+            sc:additionalType "http://edamontology.org/data_0906" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Protein interaction data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0906" ;
-            sc:name "Protein interaction data" ;
-            sc:sameAs "http://edamontology.org/data_0906" ],
+            sc:additionalType "http://edamontology.org/data_0842" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Identifier" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0842" ;
-            sc:name "Identifier" ;
-            sc:sameAs "http://edamontology.org/data_0842" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0905" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Protein interaction raw data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0602 ;
-    sc:citation <https://doi.org/10.1093/nar/gks1055> ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAB1128>,
+        <https://doi.org/10.1093/nar/gks1055>,
+        "pmcid:PMC8728246",
+        "pubmed:34850110" ;
     sc:description "Information on physical molecular interactions, biochemical pathways, and gene regulatory networks in human." ;
     sc:featureList edam:operation_0224 ;
     sc:name "ConsensusPathDB" ;
@@ -146121,8 +138646,28 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
     sc:url "http://cPDB.molgen.mpg.de/" ;
     biotools:primaryContact "Dr. Atanas Kamburov" .
 
+<https://bio.tools/consensusprime> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Workflow" ;
+    sc:applicationSubCategory edam:topic_0081,
+        edam:topic_0632,
+        edam:topic_0769 ;
+    sc:citation <https://doi.org/10.21203/RS.3.RS-1030641/V1> ;
+    sc:description "Pipeline to identify ideal consensus regions from homologue sequences for primer design." ;
+    sc:featureList edam:operation_0292,
+        edam:operation_0308,
+        edam:operation_0564,
+        edam:operation_3237,
+        edam:operation_3965 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "ConsensusPrime" ;
+    sc:operatingSystem "Linux" ;
+    sc:url "https://github.com/mcollatz/ConsensusPrime" .
+
 <https://bio.tools/consensusseeker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0622 ;
@@ -146141,7 +138686,7 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
     biotools:primaryContact "Astrid Louise Deschenes" .
 
 <https://bio.tools/consensx> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0176,
         edam:topic_0593,
@@ -146159,7 +138704,7 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
     sc:url "http://consensx.itk.ppke.hu" .
 
 <https://bio.tools/consent> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_2258,
@@ -146175,7 +138720,7 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
     biotools:primaryContact "Francois Berenger" .
 
 <https://bio.tools/consent-correct> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0196,
@@ -146192,7 +138737,7 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
     sc:url "https://github.com/morispi/CONSENT" .
 
 <https://bio.tools/consept> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3173,
@@ -146209,7 +138754,7 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
     sc:url "https://github.com/PayamDiba/CoNSEPT" .
 
 <https://bio.tools/conseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0128,
@@ -146231,20 +138776,30 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
     sc:url "http://conseq.bioinfo.tau.ac.il/" ;
     biotools:primaryContact "ConSeq Support" .
 
-<https://bio.tools/conservation_genetics> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0602,
-        edam:topic_3053,
-        edam:topic_3810 ;
-    sc:citation <https://doi.org/10.1111/MEC.15202>,
-        "pubmed:31392753" ;
-    sc:description "> LOW CONFIDENCE! | Linking science with practice | 3rd Annual Meeting in Conservation Genetics 2018 – at the Natural History Museum Vienna | 3rd Annual Meeting in Conservation Genetics 2018 | at the Natural History Museum Vienna | on behalf of the scientific committee we invite you to the 3rd Annual Meeting in Conservation Genetics which will be held from 26-28 February 2018 at the Natural History Museum Vienna. Your contributions will inform on exciting conservation genetic research and emerging new developments. Our objectives are to provide a platform for personal exchange for scientists, practitioners and stakeholders interested in conservation genetics and to establish a network in conservation genetics in Central Europe and beyond. Keynotes will be given by renowned scientists from within the European conservation genetic community" ;
-    sc:featureList edam:operation_3196,
-        edam:operation_3435 ;
-    sc:name "conservation genetics" ;
-    sc:url "https://consgen18.nhm-wien.ac.at/" .
+<https://bio.tools/consig> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0080,
+        edam:topic_0121,
+        edam:topic_3172,
+        edam:topic_3308,
+        edam:topic_3360 ;
+    sc:citation <https://doi.org/10.1093/BIB/BBAC253>,
+        "pubmed:35758241" ;
+    sc:description "ConSIG is a web page which can discovery of molecular signature from OMIC data." ;
+    sc:featureList edam:operation_2422,
+        edam:operation_3501,
+        edam:operation_3936 ;
+    sc:isAccessibleForFree true ;
+    sc:name "ConSIG" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <http://idrblab.cn/consig/> ;
+    sc:url "https://idrblab.org/consig/" .
 
 <https://bio.tools/consite> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0749,
@@ -146266,7 +138821,7 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
     biotools:primaryContact "Annika Sandelin" .
 
 <https://bio.tools/console> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0166,
         edam:topic_0623,
@@ -146284,7 +138839,7 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
     biotools:primaryContact "Godzik Lab" .
 
 <https://bio.tools/consort-nlp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0218,
         edam:topic_2640,
@@ -146302,7 +138857,7 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
     sc:url "http://www.consort-nlp.org" .
 
 <https://bio.tools/consort-tm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Ontology" ;
     sc:applicationSubCategory edam:topic_0218,
         edam:topic_3379,
@@ -146317,14 +138872,12 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
 
 <https://bio.tools/conspred> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1270" ;
-            sc:name "Feature table" ;
-            sc:sameAs "http://edamontology.org/data_1270" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1270" ;
+            sc:name "Feature table" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2259 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btw393> ;
@@ -146339,7 +138892,7 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
     biotools:primaryContact "Thomas Rattei" .
 
 <https://bio.tools/consreg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0749,
         edam:topic_0780,
@@ -146357,7 +138910,7 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
     sc:url "https://github.com/LiLabAtVT/ConSReg" .
 
 <https://bio.tools/consrm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0160,
@@ -146376,7 +138929,7 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
     biotools:primaryContact "Jia Meng" .
 
 <https://bio.tools/constand> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -146395,7 +138948,7 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
     sc:url "https://bioconductor.org/packages/devel/bioc/html/CONSTANd.html" .
 
 <https://bio.tools/constax> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0637 ;
     sc:citation <https://doi.org/10.1186/s12859-017-1952-x> ;
@@ -146410,7 +138963,7 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
     biotools:primaryContact "Gian Maria Niccolò Benucci" .
 
 <https://bio.tools/constax2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0637,
         edam:topic_3174,
@@ -146427,7 +138980,7 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
     biotools:primaryContact <https://orcid.org/0000-0002-9941-8268> .
 
 <https://bio.tools/constclust> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2229,
@@ -146444,7 +138997,7 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
     sc:url "https://github.com/ivirshup/constclust" .
 
 <https://bio.tools/consult> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_2229,
@@ -146461,7 +139014,7 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
     biotools:primaryContact <https://orcid.org/0000-0001-5410-1518> .
 
 <https://bio.tools/consurf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0166 ;
     sc:author "Guy Yachdav, Gershon Celniker" ;
@@ -146477,7 +139030,7 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
     biotools:primaryContact "Rostlab" .
 
 <https://bio.tools/consurf-db> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_1317,
         edam:topic_2275 ;
@@ -146493,8 +139046,26 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
     sc:softwareHelp <http://bental.tau.ac.il/new_ConSurfDB/> ;
     sc:url "https://consurfdb.tau.ac.il/" .
 
+<https://bio.tools/consurf_server> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0078,
+        edam:topic_0099,
+        edam:topic_3170 ;
+    sc:citation <https://doi.org/10.1002/CPZ1.270>,
+        "pubmed:34619810" ;
+    sc:description "Server for the Identification of Functional Regions in Proteins." ;
+    sc:featureList edam:operation_0292,
+        edam:operation_2421 ;
+    sc:isAccessibleForFree true ;
+    sc:name "ConSurf" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://consurf.tau.ac.il/" .
+
 <https://bio.tools/contactgan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0108,
@@ -146513,7 +139084,7 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
     biotools:primaryContact "Daisuke Kihara" .
 
 <https://bio.tools/contamde-lm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -146530,7 +139101,7 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
     sc:url "https://github.com/zhanghfd/contamDE" .
 
 <https://bio.tools/contaminationX> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0654 ;
     sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTZ660>,
@@ -146541,7 +139112,7 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
     sc:url "http://github.com/sapfo/contaminationX" .
 
 <https://bio.tools/contamld> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0625,
@@ -146557,7 +139128,7 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
     sc:url "https://github.com/nathan-nakatsuka/ContamLD" .
 
 <https://bio.tools/contest> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:citation "pubmed:21803805" ;
@@ -146571,8 +139142,25 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
     sc:url "http://archive.broadinstitute.org/cancer/cga/contest" ;
     biotools:primaryContact "ContEst team" .
 
+<https://bio.tools/contextmap> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0102 ;
+    sc:citation <https://doi.org/10.1186/s12859-015-0557-5>,
+        "pmcid:PMC4411664",
+        "pubmed:25928589" ;
+    sc:description "ContextMap is a very accurate read mapping tool for data from RNA-seq experiments. It can be used to refine mapping provided by other tools or as a standalone program." ;
+    sc:featureList edam:operation_3198 ;
+    sc:isAccessibleForFree true ;
+    sc:name "contextmap" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://www.bio.ifi.lmu.de//files/Software/ContextMap/manual/ContextMap-manual.html> ;
+    sc:url "https://www.bio.ifi.lmu.de/software/contextmap/" .
+
 <https://bio.tools/contibait> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0622 ;
@@ -146592,7 +139180,7 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
     biotools:primaryContact <https://orcid.org/0000-0001-7609-5905> .
 
 <https://bio.tools/contigextender> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0749,
@@ -146611,16 +139199,32 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
     sc:name "ContigExtender" ;
     sc:url "https://github.com/dengzac/contig-extender" .
 
+<https://bio.tools/contignet> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0798,
+        edam:topic_3168,
+        edam:topic_3174,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC239>,
+        "pmcid:PMC9235506",
+        "pubmed:35758806" ;
+    sc:description "Phage-bacterial contig association prediction with a convolutional neural network." ;
+    sc:featureList edam:operation_0310,
+        edam:operation_3731,
+        edam:operation_3927 ;
+    sc:license "Other" ;
+    sc:name "ContigNet" ;
+    sc:url "https://github.com/tianqitang1/ContigNet" .
+
 <https://bio.tools/contigtax> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0925" ;
-            sc:name "Sequence assembly" ;
-            sc:sameAs "http://edamontology.org/data_0925" ] ;
+            sc:additionalType "http://edamontology.org/data_0925" ;
+            sc:name "Sequence assembly" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2526" ;
-            sc:name "Text data" ;
-            sc:sameAs "http://edamontology.org/data_2526" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2526" ;
+            sc:name "Text data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3174 ;
     sc:description "Assigns taxonomy to metagenomic contigs." ;
@@ -146638,14 +139242,13 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
 
 <https://bio.tools/contiguator> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1234" ;
-            sc:name "Sequence set (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1234" ] ;
+            sc:additionalType "http://edamontology.org/data_1234" ;
+            sc:name "Sequence set (nucleic acid)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1711" ;
-            sc:name "Sequence alignment image" ;
-            sc:sameAs "http://edamontology.org/data_1711" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1711" ;
+            sc:encodingFormat "http://edamontology.org/format_1333" ;
+            sc:name "Sequence alignment image" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
@@ -146659,7 +139262,7 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
     sc:url "http://contiguator.sourceforge.net/" .
 
 <https://bio.tools/contiguity> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196 ;
     sc:citation <https://doi.org/10.7287/peerj.preprints.1037v1> ;
@@ -146674,8 +139277,55 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
     sc:softwareVersion "1.0.4" ;
     sc:url "http://mjsull.github.io/Contiguity/" .
 
+<https://bio.tools/continuity> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0602,
+        edam:topic_0769,
+        edam:topic_3382 ;
+    sc:citation <https://doi.org/10.1117/12.2613201>,
+        "pmcid:PMC9205324",
+        "pubmed:35720672" ;
+    sc:description "A novel, open-source interactive computation and visualization tool for brain connectome data." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_2428 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "CONTINUITY" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/NIRALUser/CONTINUITY" .
+
+<https://bio.tools/contnext> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2299" ;
+            sc:name "Gene name" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0602,
+        edam:topic_2229,
+        edam:topic_3068,
+        edam:topic_3170,
+        edam:topic_3308 ;
+    sc:citation <https://doi.org/10.1186/s12859-022-04765-0>,
+        "pmcid:PMC9202106",
+        "pubmed:35705903" ;
+    sc:description "Elucidating gene expression patterns across multiple biological contexts through a large-scale investigation of transcriptomic datasets." ;
+    sc:featureList edam:operation_3463,
+        edam:operation_3766,
+        edam:operation_3925 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "ContNeXt" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://contnext.scai.fraunhofer.de/" .
+
 <https://bio.tools/contort> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_3169,
@@ -146694,7 +139344,7 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
     sc:url "https://github.com/GLBRC/contort" .
 
 <https://bio.tools/contours-gaussian> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3299,
@@ -146713,7 +139363,7 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
     biotools:primaryContact "Li Wang" .
 
 <https://bio.tools/contourv1> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_3307 ;
     sc:citation "pubmed:23613489" ;
@@ -146725,7 +139375,7 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
     sc:url "https://sites.google.com/site/contourv1/" .
 
 <https://bio.tools/contourv2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_3307 ;
     sc:citation "pubmed:25521701" ;
@@ -146737,7 +139387,7 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
     sc:url "https://sites.google.com/site/contourv2/" .
 
 <https://bio.tools/contra> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_2640,
@@ -146759,14 +139409,12 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
 
 <https://bio.tools/contra_v2> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ] ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:name "Nucleic acid sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2070" ;
-            sc:name "Sequence motif (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_2070" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2070" ;
+            sc:name "Sequence motif (nucleic acid)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3511 ;
     sc:citation <https://doi.org/10.1093/nar/gkr355>,
@@ -146784,7 +139432,7 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
     sc:url "http://bioit.irc.ugent.be/contrav2/index.php?v2" .
 
 <https://bio.tools/contra_v3> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0749,
@@ -146801,7 +139449,7 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
     sc:url "http://bioit2.irc.ugent.be/contra/v3" .
 
 <https://bio.tools/contrafold> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0099,
@@ -146818,7 +139466,7 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
     sc:url "http://contra.stanford.edu/contrafold/" .
 
 <https://bio.tools/contrail> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196 ;
     sc:citation <https://doi.org/10.1101/gr.101360.109> ;
@@ -146832,7 +139480,7 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
     biotools:primaryContact "Steven L. Salzberg" .
 
 <https://bio.tools/contralign> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:description "CONTRAlign (CONditional TRAining for Protein Sequence Alignment)is an extensible and fully automatic parameter learning framework for protein pairwise sequence alignment based on pair conditional random fields. The CONTRAlign framework enables the development of feature-rich alignment models which generalize well to previously unseen sequences and avoid overfitting by controlling model complexity through regularization." ;
@@ -146844,8 +139492,26 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
     sc:softwareVersion "2.01" ;
     sc:url "http://contra.stanford.edu/contralign/" .
 
+<https://bio.tools/contreedp> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0199,
+        edam:topic_2640,
+        edam:topic_3293 ;
+    sc:citation <https://doi.org/10.1101/2021.10.13.463978> ;
+    sc:description "A consensus method of tumor trees based on maximum directed partition support problem." ;
+    sc:featureList edam:operation_0323,
+        edam:operation_0325 ;
+    sc:isAccessibleForFree true ;
+    sc:license "CC0-1.0" ;
+    sc:name "ConTreeDP" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/CMUSchwartzLab/ConTreeDP" .
+
 <https://bio.tools/control-freec> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btr670> ;
     sc:description "Control-FREEC is a tool for detection of copy-number changes and allelic imbalances (including LOH) using deep-sequencing data" ;
     sc:featureList edam:operation_3964 ;
@@ -146853,7 +139519,7 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
     sc:url "http://boevalab.inf.ethz.ch/FREEC/" .
 
 <https://bio.tools/control-zenblue-microscope> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -146872,22 +139538,22 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
 
 <https://bio.tools/conumee> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3117" ;
-            sc:name "Microarray hybridisation data" ;
-            sc:sameAs "http://edamontology.org/data_3117" ],
+            sc:additionalType "http://edamontology.org/data_3117" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Microarray hybridisation data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2012" ;
-            sc:name "Sequence coordinates" ;
-            sc:sameAs "http://edamontology.org/data_2012" ] ;
+            sc:additionalType "http://edamontology.org/data_2012" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Sequence coordinates" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1276" ;
-            sc:name "Nucleic acid features" ;
-            sc:sameAs "http://edamontology.org/data_1276" ],
+            sc:additionalType "http://edamontology.org/data_1276" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Nucleic acid features" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -146907,7 +139573,7 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
     biotools:primaryContact "Volker Hovestadt" .
 
 <https://bio.tools/conus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0099 ;
@@ -146924,7 +139590,7 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
     sc:url "http://eddylab.org/software/conus/" .
 
 <https://bio.tools/convaq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
@@ -146946,7 +139612,7 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
         "Simon Larsen" .
 
 <https://bio.tools/convart> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0625,
@@ -146965,30 +139631,30 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
 
 <https://bio.tools/convert> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2854" ;
-            sc:name "Position-specific scoring matrix" ;
-            sc:sameAs "http://edamontology.org/data_2854" ],
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Sequence record" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
+            sc:additionalType "http://edamontology.org/data_2854" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Position-specific scoring matrix" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ],
+            sc:additionalType "http://edamontology.org/data_2854" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Position-specific scoring matrix" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1669" ;
-            sc:name "P-value" ;
-            sc:sameAs "http://edamontology.org/data_1669" ],
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2854" ;
-            sc:name "Position-specific scoring matrix" ;
-            sc:sameAs "http://edamontology.org/data_2854" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1669" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "P-value" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3071,
@@ -147010,14 +139676,14 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
 
 <https://bio.tools/convert-matrix> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2070" ;
-            sc:name "Sequence motif (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_2070" ] ;
+            sc:additionalType "http://edamontology.org/data_2070" ;
+            sc:encodingFormat "http://edamontology.org/format_2068" ;
+            sc:name "Sequence motif (nucleic acid)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2070" ;
-            sc:name "Sequence motif (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_2070" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2070" ;
+            sc:encodingFormat "http://edamontology.org/format_2068" ;
+            sc:name "Sequence motif (nucleic acid)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application",
         "Web service" ;
@@ -147041,22 +139707,22 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
 
 <https://bio.tools/convert2annovar> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ],
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence variations" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3063,
@@ -147076,14 +139742,14 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
 
 <https://bio.tools/converter_genbank_to_fasta> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1093/nar/gkw343>,
@@ -147097,34 +139763,34 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
 
 <https://bio.tools/converttranscriptfile> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
+            sc:name "Sequence trace" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1975" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ],
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_3003" ;
+            sc:name "Annotation track" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Sequence trace" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1975" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:citation <https://doi.org/10.1093/nar/gkw343>,
@@ -147142,18 +139808,18 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
 
 <https://bio.tools/converttranscriptfile_fastqtofasta> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:citation <https://doi.org/10.1093/nar/gkw343>,
@@ -147170,7 +139836,7 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
     biotools:primaryContact "Galaxy Support Team" .
 
 <https://bio.tools/convex-pl-r> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0209,
@@ -147186,7 +139852,7 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
     sc:url "https://team.inria.fr/nano-d/convex-pl/" .
 
 <https://bio.tools/convida> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3168,
@@ -147202,7 +139868,7 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
     sc:url "https://convida.inf.um.es" .
 
 <https://bio.tools/convmhc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2830,
         edam:topic_3376,
@@ -147218,7 +139884,7 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
     biotools:primaryContact "Dongsup Kim" .
 
 <https://bio.tools/conway-gameoflife> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344 ;
@@ -147234,7 +139900,7 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
     biotools:primaryContact "Ibraheem Al-Dhamari" .
 
 <https://bio.tools/cony> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0622,
@@ -147250,8 +139916,32 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
     sc:name "CONY" ;
     sc:url "https://github.com/weiyuchung/CONY" .
 
+<https://bio.tools/cookie> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_2229,
+        edam:topic_2830,
+        edam:topic_3277,
+        edam:topic_3305 ;
+    sc:citation <https://doi.org/10.3389/FGENE.2022.954024>,
+        "pmcid:PMC9335369",
+        "pubmed:35910222" ;
+    sc:description "Selecting Representative Samples From Complex Biological Datasets Using K-Medoids Clustering." ;
+    sc:featureList edam:operation_0480,
+        edam:operation_3432,
+        edam:operation_3799 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "Cookie" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://wilsonimmunologylab.github.io/Cookie/install.html>,
+        <https://wilsonimmunologylab.github.io/Cookie/tutorial.html> ;
+    sc:url "https://wilsonimmunologylab.github.io/Cookie/" .
+
 <https://bio.tools/coolbox> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0622,
@@ -147267,7 +139957,7 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
     sc:url "https://github.com/GangCaoLab/CoolBox" .
 
 <https://bio.tools/coolpuppy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0749,
@@ -147287,14 +139977,12 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
 
 <https://bio.tools/coordinateserver> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3786" ;
-            sc:name "Query script" ;
-            sc:sameAs "http://edamontology.org/data_3786" ] ;
+            sc:additionalType "http://edamontology.org/data_3786" ;
+            sc:name "Query script" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:name "Protein structure" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0092 ;
     sc:author "David Sehnal" ;
@@ -147313,38 +140001,38 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
 
 <https://bio.tools/coordinatestosequence> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2306" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2305" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1975" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_3003" ;
+            sc:name "Annotation track" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
+            sc:name "Sequence trace" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:citation <https://doi.org/10.1093/nar/gkw343>,
@@ -147362,13 +140050,15 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
 
 <https://bio.tools/coot> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:name "Protein structure" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_1317 ;
-    sc:citation <https://doi.org/10.1107/S0907444904019158> ;
+    sc:citation <https://doi.org/10.1107/S0907444904019158>,
+        <https://doi.org/10.1107/S0907444910007493>,
+        "pmcid:PMC2852313",
+        "pubmed:20383002" ;
     sc:description "(Crystallographic Object)-Oriented Toolkit." ;
     sc:featureList edam:operation_0570 ;
     sc:isAccessibleForFree true ;
@@ -147381,7 +140071,7 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
     sc:url "http://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/" .
 
 <https://bio.tools/copa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2640 ;
@@ -147400,7 +140090,7 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
     biotools:primaryContact "James W. MacDonald" .
 
 <https://bio.tools/copap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0602,
@@ -147424,14 +140114,14 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
 
 <https://bio.tools/copasi> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ] ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:encodingFormat "http://edamontology.org/format_3685" ;
+            sc:name "Pathway or network" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:encodingFormat "http://edamontology.org/format_3685" ;
+            sc:name "Pathway or network" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application",
         "Library" ;
@@ -147452,7 +140142,7 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
     sc:url "http://copasi.org/" .
 
 <https://bio.tools/cope> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3322,
         edam:topic_3360,
@@ -147465,7 +140155,7 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
     biotools:primaryContact "David van Klaveren" .
 
 <https://bio.tools/copheism> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Script" ;
     sc:applicationSubCategory edam:topic_3298,
@@ -147482,8 +140172,22 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
     sc:softwareVersion "1.4.1" ;
     sc:url "https://bitbucket.org/izhbannikov/cophesim" .
 
+<https://bio.tools/copid> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:citation "pubmed:18928200" ;
+    sc:description "Composition based  Protein Identification" ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "copid" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/copid/index.html> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/copid/index.html" .
+
 <https://bio.tools/copla> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0196,
@@ -147508,34 +140212,34 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
 
 <https://bio.tools/coprarna> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3495" ;
-            sc:name "RNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3495" ] ;
+            sc:additionalType "http://edamontology.org/data_3495" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "RNA sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0872" ;
-            sc:name "Phylogenetic tree" ;
-            sc:sameAs "http://edamontology.org/data_0872" ],
+            sc:additionalType "http://edamontology.org/data_1270" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Feature table" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1270" ;
-            sc:name "Feature table" ;
-            sc:sameAs "http://edamontology.org/data_1270" ],
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3508" ;
+            sc:name "Image" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1270" ;
-            sc:name "Feature table" ;
-            sc:sameAs "http://edamontology.org/data_1270" ],
+            sc:additionalType "http://edamontology.org/data_1270" ;
+            sc:encodingFormat "http://edamontology.org/format_3508" ;
+            sc:name "Feature table" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ],
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3508" ;
+            sc:name "Image" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1270" ;
-            sc:name "Feature table" ;
-            sc:sameAs "http://edamontology.org/data_1270" ],
+            sc:additionalType "http://edamontology.org/data_0872" ;
+            sc:encodingFormat "http://edamontology.org/format_1910" ;
+            sc:name "Phylogenetic tree" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1270" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Feature table" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:author <http://orcid.org/0000-0001-8231-3323>,
@@ -147559,7 +140263,7 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
         "Patrick Wright" .
 
 <https://bio.tools/cops> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -147581,7 +140285,7 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
     biotools:primaryContact "TopSearch Support" .
 
 <https://bio.tools/coptr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3172,
         edam:topic_3174,
@@ -147598,7 +140302,7 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
     sc:url "https://github.com/tyjo/coptr" .
 
 <https://bio.tools/copub> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -147612,8 +140316,31 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
     sc:name "CoPub" ;
     sc:url "http://www.copub.org" .
 
+<https://bio.tools/copy-scat> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0625,
+        edam:topic_2640,
+        edam:topic_3173,
+        edam:topic_3940 ;
+    sc:citation <https://doi.org/10.1126/SCIADV.ABG6045>,
+        "pmcid:PMC8514091",
+        "pubmed:34644115" ;
+    sc:description "Deconvoluting single-cell chromatin accessibility of genetic subclones in cancer." ;
+    sc:featureList edam:operation_3196,
+        edam:operation_3233,
+        edam:operation_3629 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "Copy-scAT" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/spcdot/CopyscAT" .
+
 <https://bio.tools/copycatlayout> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0602 ;
     sc:citation <https://doi.org/10.12688/f1000research.15144.2> ;
@@ -147629,7 +140356,7 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
     sc:url "http://apps.cytoscape.org/apps/copycatLayout" .
 
 <https://bio.tools/copydetective> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0091 ;
     sc:author "Sarah Sandmann" ;
@@ -147648,26 +140375,26 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
 
 <https://bio.tools/copynumber> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2012" ;
-            sc:name "Sequence coordinates" ;
-            sc:sameAs "http://edamontology.org/data_2012" ],
+            sc:additionalType "http://edamontology.org/data_2012" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Sequence coordinates" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ] ;
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Sequence variations" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1636" ;
-            sc:name "Heat map" ;
-            sc:sameAs "http://edamontology.org/data_1636" ],
+            sc:additionalType "http://edamontology.org/data_1622" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Disease report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ],
+            sc:additionalType "http://edamontology.org/data_1636" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Heat map" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1622" ;
-            sc:name "Disease report" ;
-            sc:sameAs "http://edamontology.org/data_1622" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2269,
@@ -147689,8 +140416,28 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
     sc:url "http://bioconductor.org/packages/release/bioc/html/copynumber.html" ;
     biotools:primaryContact "Gro Nilsen" .
 
+<https://bio.tools/copyrighter> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0099,
+        edam:topic_3301,
+        edam:topic_3697,
+        edam:topic_3941 ;
+    sc:citation <https://doi.org/10.1186/2049-2618-2-11>,
+        "pmcid:PMC4021573",
+        "pubmed:24708850" ;
+    sc:description "Correct trait bias in microbial profiles" ;
+    sc:featureList edam:operation_3799 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "copyrighter" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/fangly/AmpliCopyrighter" .
+
 <https://bio.tools/copyseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0625,
@@ -147708,7 +140455,7 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
     sc:url "http://www.embl.de/%7Ekorbel/CopySeq/" .
 
 <https://bio.tools/copywriter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0080 ;
@@ -147728,7 +140475,7 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
     biotools:primaryContact "Thomas Kuilman" .
 
 <https://bio.tools/coral> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0622 ;
@@ -147744,7 +140491,7 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
     biotools:primaryContact "Kevin Teague" .
 
 <https://bio.tools/coral-bridge> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0203,
@@ -147760,7 +140507,7 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
     sc:url "https://github.com/Shao-Group/coral" .
 
 <https://bio.tools/coral-cohort> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3299,
@@ -147776,7 +140523,7 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
     biotools:primaryContact <http://orcid.org/0000-0001-9848-7598> .
 
 <https://bio.tools/coralp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0623,
         edam:topic_0634,
@@ -147793,7 +140540,7 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
     sc:url "http://phanstiel-lab.med.unc.edu/coralp" .
 
 <https://bio.tools/corazon> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0659,
@@ -147813,7 +140560,7 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
     sc:url "http://corazon.integrativebioinformatics.me" .
 
 <https://bio.tools/corbi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0602 ;
@@ -147831,7 +140578,7 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
     biotools:primaryContact "Ling-Yun Wu" .
 
 <https://bio.tools/corc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0769,
@@ -147847,8 +140594,29 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
     biotools:primaryContact <https://orcid.org/0000-0002-7637-7547>,
         "Jonas Förster" .
 
+<https://bio.tools/cord> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0196,
+        edam:topic_0621,
+        edam:topic_3673 ;
+    sc:citation <https://doi.org/10.1007/S11427-021-2081-6>,
+        "pubmed:35696018" ;
+    sc:description "The Chordata Olfactory Receptor Database (CORD) build from the annotation data from the command line tool Genome2OR" ;
+    sc:featureList edam:operation_0269,
+        edam:operation_0310,
+        edam:operation_0362 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Other" ;
+    sc:name "CORD" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://cord.ihuman.shanghaitech.edu.cn" .
+
 <https://bio.tools/cordax> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:citation <https://doi.org/10.1038/s41467-020-17207-3>,
         "pmcid:PMC7335209",
         "pubmed:32620861" ;
@@ -147858,8 +140626,29 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
     sc:url "https://cordax.switchlab.org" ;
     biotools:primaryContact "Joost Schymkowitz" .
 
+<https://bio.tools/cordiffviz> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0602,
+        edam:topic_3170 ;
+    sc:citation <https://doi.org/10.1186/S12859-021-04383-2>,
+        "pmcid:PMC8501646",
+        "pubmed:34627139" ;
+    sc:description "R package for visualizing multi-omics differential correlation networks." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3435,
+        edam:operation_3802 ;
+    sc:isAccessibleForFree true ;
+    sc:name "CorDiffViz" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://diffcornet.github.io/CorDiffViz/demo.html> ;
+    sc:url "https://github.com/sqyu/CorDiffViz" .
+
 <https://bio.tools/cordite> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0209,
         edam:topic_0781,
@@ -147875,7 +140664,7 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
     sc:url "https://cordite.mathematik.uni-marburg.de" .
 
 <https://bio.tools/core-crispr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0634,
@@ -147891,7 +140680,7 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
     sc:url "https://rpubs.com/AleVin1995/CoRe" .
 
 <https://bio.tools/coreMRI> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0593,
         edam:topic_3316,
@@ -147913,7 +140702,7 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
     biotools:primaryContact <https://orcid.org/0000-0002-3786-3817> .
 
 <https://bio.tools/core_hunter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Library" ;
     sc:applicationSubCategory edam:topic_0625 ;
@@ -147931,8 +140720,33 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
     sc:url "http://www.corehunter.org" ;
     biotools:primaryContact "Herman De Beukelaer" .
 
+<https://bio.tools/coreatac> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workbench" ;
+    sc:applicationSubCategory edam:topic_0204,
+        edam:topic_0625,
+        edam:topic_0749,
+        edam:topic_3169,
+        edam:topic_3173 ;
+    sc:citation <https://doi.org/10.1371/JOURNAL.PCBI.1009670>,
+        "pmcid:PMC8699717",
+        "pubmed:34898596" ;
+    sc:description "A deep learning model for the functional classification of regulatory elements from single cell and bulk ATAC-seq data." ;
+    sc:featureList edam:operation_0440,
+        edam:operation_3192,
+        edam:operation_3196,
+        edam:operation_3222,
+        edam:operation_3436 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "CoRE-ATAC" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/UcarLab/CoRE-ATAC" .
+
 <https://bio.tools/corecruncher> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0622 ;
     sc:citation <https://doi.org/10.1093/MOLBEV/MSAA224>,
@@ -147944,7 +140758,7 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
     sc:url "https://github.com/lbobay/CoreCruncher" .
 
 <https://bio.tools/coregenes> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0781,
@@ -147962,7 +140776,7 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
     biotools:primaryContact "Support" .
 
 <https://bio.tools/coregnet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0602 ;
@@ -147982,7 +140796,7 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
     biotools:primaryContact <http://orcid.org/0000-0001-8084-1173> .
 
 <https://bio.tools/coremic> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3293,
         edam:topic_3301,
@@ -148004,22 +140818,20 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
 
 <https://bio.tools/coremine_medical> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0968" ;
-            sc:name "Keyword" ;
-            sc:sameAs "http://edamontology.org/data_0968" ] ;
+            sc:additionalType "http://edamontology.org/data_0968" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Keyword" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2093" ;
-            sc:name "Data reference" ;
-            sc:sameAs "http://edamontology.org/data_2093" ],
+            sc:additionalType "http://edamontology.org/data_2353" ;
+            sc:name "Ontology data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2526" ;
-            sc:name "Text data" ;
-            sc:sameAs "http://edamontology.org/data_2526" ],
+            sc:additionalType "http://edamontology.org/data_2093" ;
+            sc:name "Data reference" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2353" ;
-            sc:name "Ontology data" ;
-            sc:sameAs "http://edamontology.org/data_2353" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2526" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Text data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3303 ;
@@ -148041,7 +140853,7 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
     sc:url "http://www.coremine.com/medical" .
 
 <https://bio.tools/corenup> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3176,
@@ -148059,7 +140871,7 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
     sc:url "https://github.com/DeepLearningForSequence/CORENup-A-Combination-of-Convolutional-and-Recurrent-Deep-Neural-Networks-for-NucleosomePositioning" .
 
 <https://bio.tools/coresimul> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0621,
@@ -148077,7 +140889,7 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
     sc:url "https://github.com/lbobay/CoreSimul" .
 
 <https://bio.tools/coretracker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0622,
@@ -148092,8 +140904,30 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
     sc:url "https://github.com/UdeM-LBIT/CoreTracker" ;
     biotools:primaryContact "Nadia El-Mabrouk" .
 
+<https://bio.tools/corex_covid> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0602,
+        edam:topic_3303,
+        edam:topic_3375,
+        edam:topic_3379,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1016/J.PATTER.2021.100396>,
+        "pmcid:PMC8576113",
+        "pubmed:34778851" ;
+    sc:description "The COVID-19 Repositioning Explorer (CoREx) is a web resource to allow the visualisation of FDA approved drugs in context of their protein targets, several available interactomes, and protein function." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3223,
+        edam:operation_3501 ;
+    sc:isAccessibleForFree true ;
+    sc:name "CoREx" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://paccanarolab.org/corex/" .
+
 <https://bio.tools/corgat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Workbench",
         "Workflow" ;
@@ -148112,7 +140946,7 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
     sc:url "http://corgat.cloud.ba.infn.it/galaxy" .
 
 <https://bio.tools/corgen> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0157,
@@ -148133,7 +140967,7 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
     biotools:primaryContact "Philipp W. Messer" .
 
 <https://bio.tools/coriander-genomics-database> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0780,
         edam:topic_3170,
@@ -148153,7 +140987,7 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
     sc:url "http://cgdb.bio2db.com/" .
 
 <https://bio.tools/corins> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0130,
@@ -148168,7 +141002,7 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
     sc:url "https://github.com/LasisUFRN/CoRINs" .
 
 <https://bio.tools/corkoakdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0780 ;
@@ -148186,7 +141020,7 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
     biotools:primaryContact "Daniel Sobral" .
 
 <https://bio.tools/cormotif> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3511 ;
@@ -148205,7 +141039,7 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
     biotools:primaryContact "Yingying Wei" .
 
 <https://bio.tools/cormut> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0199 ;
@@ -148223,7 +141057,7 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
     biotools:primaryContact "Zhenpeng Li" .
 
 <https://bio.tools/corna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0769,
@@ -148239,26 +141073,26 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
 
 <https://bio.tools/cornai> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3108" ;
-            sc:name "Experimental measurement" ;
-            sc:sameAs "http://edamontology.org/data_3108" ] ;
+            sc:additionalType "http://edamontology.org/data_3108" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Experimental measurement" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ],
+            sc:additionalType "http://edamontology.org/data_1669" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "P-value" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1636" ;
-            sc:name "Heat map" ;
-            sc:sameAs "http://edamontology.org/data_1636" ],
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Plot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1669" ;
-            sc:name "P-value" ;
-            sc:sameAs "http://edamontology.org/data_1669" ],
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1636" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Heat map" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0602,
@@ -148282,7 +141116,7 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
     biotools:primaryContact "Elin Axelsson" .
 
 <https://bio.tools/cornas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3170,
@@ -148298,47 +141132,16 @@ Clustering, MultipleComparison, Sequencing, Software, Transcriptomics""" ;
     sc:url "https://github.com/joel-lzb/CORNAS" ;
     biotools:primaryContact "Tsung Fei Khang" .
 
-<https://bio.tools/corneal> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0634,
-        edam:topic_3360,
-        edam:topic_3382,
-        edam:topic_3421,
-        edam:topic_3474 ;
-    sc:citation <https://doi.org/10.1007/S00125-019-05023-4>,
-        "pubmed:31720728" ;
-    sc:description """An artificial intelligence-based deep learning algorithm for the diagnosis of diabetic neuropathy using corneal confocal microscopy.
-
-Laboratory of Biomedical Imaging.
-
-The Laboratory of Biomedical Imaging (BioImLab) is part of the Department of Information Engineering (DEI) of the University of Padova, Italy. BioImLab is involved in the research of novel techniques for biomedical image processing and analysis and in the development of diagnostic tools related to this field.
-
-Corneal Nerve Tortuosity Data Set.
-
-Corneal Nerve Images [.zip] [size: 3.59MB].
-
-Department of Information Engineering , University of Padova - Italy.
-
-Acquisition instrument: Heidelberg Retina Tomograph II with Rostock Corneal Module (HRTII32-RCM) confocal laser microscope (Heidelberg Engineering GmbH, Heidelberg, Germany).
-
-F Scarpa, E.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'HYPOTHESIS:Corneal', 'ACCMetrics', 'corneal nerve', 'INTERPRETATION:These'""" ;
-    sc:featureList edam:operation_3443,
-        edam:operation_3553,
-        edam:operation_3799 ;
-    sc:name "corneal" ;
-    sc:url "http://bioimlab.dei.unipd.it/Corneal%20Nerve%20Tortuosity%20Data%20Set.htm" .
-
 <https://bio.tools/cornet> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2974" ;
-            sc:name "Protein sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_2974" ] ;
+            sc:additionalType "http://edamontology.org/data_2974" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence (raw)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_3542 ;
@@ -148357,18 +141160,15 @@ F Scarpa, E.
 
 <https://bio.tools/cornet_arabidopsis> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1025" ;
-            sc:name "Gene identifier" ;
-            sc:sameAs "http://edamontology.org/data_1025" ] ;
+            sc:additionalType "http://edamontology.org/data_1025" ;
+            sc:name "Gene identifier" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ],
+            sc:additionalType "http://edamontology.org/data_1669" ;
+            sc:name "P-value" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1669" ;
-            sc:name "P-value" ;
-            sc:sameAs "http://edamontology.org/data_1669" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:name "Pathway or network" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0602 ;
@@ -148388,18 +141188,15 @@ F Scarpa, E.
 
 <https://bio.tools/cornet_maize> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1025" ;
-            sc:name "Gene identifier" ;
-            sc:sameAs "http://edamontology.org/data_1025" ] ;
+            sc:additionalType "http://edamontology.org/data_1025" ;
+            sc:name "Gene identifier" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ],
+            sc:additionalType "http://edamontology.org/data_1669" ;
+            sc:name "P-value" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1669" ;
-            sc:name "P-value" ;
-            sc:sameAs "http://edamontology.org/data_1669" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:name "Pathway or network" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0602 ;
@@ -148417,7 +141214,7 @@ F Scarpa, E.
     sc:url "https://bioinformatics.psb.ugent.be/cornet_maize/" .
 
 <https://bio.tools/corona-Infections-usa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344 ;
@@ -148433,7 +141230,7 @@ F Scarpa, E.
     biotools:primaryContact "Shahab" .
 
 <https://bio.tools/corona-exponential-fit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344 ;
@@ -148448,7 +141245,7 @@ F Scarpa, E.
     biotools:primaryContact "Tom Viering" .
 
 <https://bio.tools/corona-virus-modelling> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344 ;
@@ -148464,7 +141261,7 @@ F Scarpa, E.
     biotools:primaryContact "aasim Azooz" .
 
 <https://bio.tools/corona_health> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_0625,
         edam:topic_3318,
@@ -148479,7 +141276,7 @@ F Scarpa, E.
     sc:url "https://www.corona-health.net" .
 
 <https://bio.tools/coronacentral> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3068,
         edam:topic_3474,
@@ -148494,7 +141291,7 @@ F Scarpa, E.
     biotools:primaryContact <https://orcid.org/0000-0001-8198-2939> .
 
 <https://bio.tools/coronapp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0130,
         edam:topic_0199,
@@ -148512,7 +141309,7 @@ F Scarpa, E.
     sc:url "http://giorgilab.unibo.it/coronannotator/" .
 
 <https://bio.tools/coronaspades> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0196,
@@ -148535,7 +141332,7 @@ F Scarpa, E.
     sc:url "http://cab.spbu.ru/software/spades" .
 
 <https://bio.tools/coronavir> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0209,
@@ -148554,7 +141351,7 @@ F Scarpa, E.
     sc:url "https://webs.iiitd.edu.in/raghava/coronavir/" .
 
 <https://bio.tools/coronavirus-network-explorer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0602,
@@ -148573,7 +141370,7 @@ F Scarpa, E.
     biotools:primaryContact <https://orcid.org/0000-0003-1352-7242> .
 
 <https://bio.tools/coronavirus-tracker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3305,
@@ -148591,7 +141388,7 @@ F Scarpa, E.
     biotools:primaryContact "JM2" .
 
 <https://bio.tools/coronavirus_update_live> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0781,
@@ -148602,7 +141399,7 @@ F Scarpa, E.
     sc:url "https://www.worldometers.info/coronavirus" .
 
 <https://bio.tools/coronavr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0632,
         edam:topic_0659,
@@ -148620,7 +141417,7 @@ F Scarpa, E.
     sc:url "http://bioinfo.imtech.res.in/manojk/coronavr/" .
 
 <https://bio.tools/coronet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_3384,
         edam:topic_3452,
@@ -148635,8 +141432,27 @@ F Scarpa, E.
     sc:name "CoroNet" ;
     sc:url "https://github.com/drkhan107/CoroNet" .
 
+<https://bio.tools/corral> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0769,
+        edam:topic_2269,
+        edam:topic_3170 ;
+    sc:citation <https://doi.org/10.1101/2021.11.24.469874> ;
+    sc:description "Single-cell RNA-seq dimension reduction, batch integration, and visualization with correspondence analysis." ;
+    sc:featureList edam:operation_2939,
+        edam:operation_3891,
+        edam:operation_3935 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "corral" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/laurenhsu1/corral" .
+
 <https://bio.tools/corrdrugtumormsi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:description "A R pipeline to correlate drug distribution with tumor tissue-types in mass spectrometry imaging (MSI) data." ;
     sc:isAccessibleForFree true ;
@@ -148645,7 +141461,7 @@ F Scarpa, E.
     sc:url "https://github.com/mridulaprasad/CorrDrugTumorMSI" .
 
 <https://bio.tools/correct_bacode> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3168,
@@ -148662,7 +141478,7 @@ F Scarpa, E.
     biotools:primaryContact "Itoshi Nikaido" .
 
 <https://bio.tools/correlation-analyzer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -148685,22 +141501,21 @@ F Scarpa, E.
 
 <https://bio.tools/correlationplus> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ],
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein structure" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2082" ;
-            sc:name "Matrix" ;
-            sc:sameAs "http://edamontology.org/data_2082" ] ;
+            sc:additionalType "http://edamontology.org/data_2082" ;
+            sc:name "Matrix" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ],
+            sc:additionalType "http://edamontology.org/data_2082" ;
+            sc:encodingFormat "http://edamontology.org/format_3603" ;
+            sc:name "Matrix" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2082" ;
-            sc:name "Matrix" ;
-            sc:sameAs "http://edamontology.org/data_2082" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein structure" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0166,
         edam:topic_3510 ;
@@ -148717,7 +141532,7 @@ correlationplus contains three main scripts that you can use to calculate, visua
     sc:url "https://github.com/tekpinar/correlationplus" .
 
 <https://bio.tools/correlator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0611,
         edam:topic_0769,
@@ -148733,7 +141548,7 @@ correlationplus contains three main scripts that you can use to calculate, visua
     sc:url "https://github.com/wright-cemrc-projects/corr" .
 
 <https://bio.tools/correlia> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3301,
@@ -148751,7 +141566,7 @@ correlationplus contains three main scripts that you can use to calculate, visua
     sc:url "http://www.ufz.de/correlia" .
 
 <https://bio.tools/correlogo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0097,
@@ -148772,7 +141587,7 @@ correlationplus contains three main scripts that you can use to calculate, visua
     biotools:primaryContact "Eckart Bindewald" .
 
 <https://bio.tools/correp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0080 ;
@@ -148790,7 +141605,7 @@ correlationplus contains three main scripts that you can use to calculate, visua
     biotools:primaryContact "Dongxiao Zhu" .
 
 <https://bio.tools/corrna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0097,
@@ -148811,7 +141626,7 @@ correlationplus contains three main scripts that you can use to calculate, visua
         "Jerome Waldispuhl" .
 
 <https://bio.tools/corset> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3391 ;
     sc:citation <https://doi.org/10.1186/s13059-014-0410-6> ;
@@ -148827,7 +141642,7 @@ correlationplus contains three main scripts that you can use to calculate, visua
     biotools:primaryContact "Australia" .
 
 <https://bio.tools/cortex> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0622 ;
     sc:citation <https://doi.org/10.1038/ng.1028> ;
@@ -148842,7 +141657,7 @@ correlationplus contains three main scripts that you can use to calculate, visua
         "Zamin Iqbal" .
 
 <https://bio.tools/corto> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -148859,14 +141674,13 @@ correlationplus contains three main scripts that you can use to calculate, visua
 
 <https://bio.tools/corum> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2713" ;
-            sc:name "Protein ID (CORUM)" ;
-            sc:sameAs "http://edamontology.org/data_2713" ] ;
+            sc:additionalType "http://edamontology.org/data_2713" ;
+            sc:name "Protein ID (CORUM)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1537" ;
-            sc:name "Protein structure report" ;
-            sc:sameAs "http://edamontology.org/data_1537" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1537" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Protein structure report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0140 ;
@@ -148886,14 +141700,12 @@ correlationplus contains three main scripts that you can use to calculate, visua
 
 <https://bio.tools/coryneregnet> a sc:SoftwareApplication ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ],
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:name "Sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0842" ;
-            sc:name "Identifier" ;
-            sc:sameAs "http://edamontology.org/data_0842" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0842" ;
+            sc:name "Identifier" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0602 ;
@@ -148914,7 +141726,7 @@ correlationplus contains three main scripts that you can use to calculate, visua
     biotools:primaryContact <http://orcid.org/0000-0002-0282-0462> .
 
 <https://bio.tools/coseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3168,
@@ -148935,7 +141747,7 @@ correlationplus contains three main scripts that you can use to calculate, visua
     biotools:primaryContact "Andrea Rau" .
 
 <https://bio.tools/cosifer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -148953,7 +141765,7 @@ correlationplus contains three main scripts that you can use to calculate, visua
     sc:url "https://ibm.biz/cosifer-aas" .
 
 <https://bio.tools/cosinor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3300,
@@ -148978,8 +141790,28 @@ Cosinor Online, cosinor on the web, is a simple web-based application evaluating
     sc:name "cosinor" ;
     sc:url "https://cosinor.online" .
 
+<https://bio.tools/cosinormixedeffects> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_3300,
+        edam:topic_3410,
+        edam:topic_3520 ;
+    sc:citation <https://doi.org/10.1186/S12859-021-04463-3>,
+        "pmcid:PMC8590130",
+        "pubmed:34773978" ;
+    sc:description "R package for mixed-effects cosinor models. The cosinoRmixedeffects package can be implemented for the estimation and prediction of the a mixed-effects cosinor model for longitudinal periodic data." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_2238 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "cosinoRmixedeffects" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/maytesuarezfarinas/cosinoRmixedeffects" .
+
 <https://bio.tools/cosinorpy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_2815,
@@ -148996,7 +141828,7 @@ Cosinor Online, cosinor on the web, is a simple web-based application evaluating
     sc:url "https://github.com/mmoskon/CosinorPy" .
 
 <https://bio.tools/cosmas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0749,
@@ -149014,7 +141846,7 @@ Cosinor Online, cosinor on the web, is a simple web-based application evaluating
     sc:url "https://github.com/jtmff/cosmas" .
 
 <https://bio.tools/cosmed> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_0659,
@@ -149035,7 +141867,7 @@ Cosinor Online, cosinor on the web, is a simple web-based application evaluating
     sc:url "https://mulongdu.shinyapps.io/cosmed" .
 
 <https://bio.tools/cosmed-fitmate-data-importer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3407 ;
     sc:description "Import Cosmed FitMate metabolic data text files into MATLAB." ;
@@ -149049,7 +141881,7 @@ Cosinor Online, cosinor on the web, is a simple web-based application evaluating
     biotools:primaryContact "John Rogers" .
 
 <https://bio.tools/cosmic> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
@@ -149081,7 +141913,7 @@ Cosinor Online, cosinor on the web, is a simple web-based application evaluating
     biotools:primaryContact "Cosmic Support" .
 
 <https://bio.tools/cosmiq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3172 ;
@@ -149102,7 +141934,7 @@ Cosinor Online, cosinor on the web, is a simple web-based application evaluating
         "David Fischer" .
 
 <https://bio.tools/cosmos> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0593,
         edam:topic_2275,
@@ -149115,7 +141947,7 @@ Cosinor Online, cosinor on the web, is a simple web-based application evaluating
     sc:url "http://www.cosmos-software.de/ce_intro.html" .
 
 <https://bio.tools/cosmos-omics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -149134,7 +141966,7 @@ Cosinor Online, cosinor on the web, is a simple web-based application evaluating
     sc:url "https://saezlab.github.io/cosmosR/" .
 
 <https://bio.tools/cosnet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3510 ;
@@ -149152,7 +141984,7 @@ Cosinor Online, cosinor on the web, is a simple web-based application evaluating
     biotools:primaryContact "Marco Frasca" .
 
 <https://bio.tools/cosore> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3071,
@@ -149170,7 +142002,7 @@ Cosinor Online, cosinor on the web, is a simple web-based application evaluating
     sc:url "https://github.com/bpbond/cosore" .
 
 <https://bio.tools/cosrank> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_2275 ;
@@ -149189,7 +142021,7 @@ Cosinor Online, cosinor on the web, is a simple web-based application evaluating
     biotools:primaryContact "Luigi Cavallo" .
 
 <https://bio.tools/costa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_3308,
         edam:topic_3474 ;
@@ -149207,7 +142039,7 @@ Cosinor Online, cosinor on the web, is a simple web-based application evaluating
     sc:url "https://github.com/rpmccordlab/CoSTA" .
 
 <https://bio.tools/costat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_2269 ;
     sc:description "CoStat is an easy-to-use program for data manipulation and statistical analysis." ;
@@ -149221,7 +142053,7 @@ Cosinor Online, cosinor on the web, is a simple web-based application evaluating
     sc:url "http://www.cohort.com/costat.html" .
 
 <https://bio.tools/cotan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3170,
@@ -149244,7 +142076,7 @@ Cosinor Online, cosinor on the web, is a simple web-based application evaluating
     sc:url "https://github.com/seriph78/COTAN" .
 
 <https://bio.tools/cotrex> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2885,
@@ -149266,8 +142098,26 @@ Cosinor Online, cosinor on the web, is a simple web-based application evaluating
     sc:softwareVersion "2.0" ;
     sc:url "https://barcuvaseq.org/cotrex/" .
 
+<https://bio.tools/cots> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0625,
+        edam:topic_0804,
+        edam:topic_3068,
+        edam:topic_3384,
+        edam:topic_3400 ;
+    sc:citation <https://doi.org/10.1038/S41433-022-02147-7>,
+        "pubmed:35764876" ;
+    sc:description "A consensus-based decision tool for initiating antitubercular therapy in ocular tuberculosis." ;
+    sc:isAccessibleForFree true ;
+    sc:name "COTS" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://www.oculartb.net/cots-calc" .
+
 <https://bio.tools/couger> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0654,
@@ -149289,7 +142139,7 @@ Cosinor Online, cosinor on the web, is a simple web-based application evaluating
         "RALUCA GORDÂN" .
 
 <https://bio.tools/count> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3299 ;
     sc:citation <https://doi.org/10.1007/11732990> ;
     sc:description "Count is a software package for the evolutionary analysis of homolog family sizes (phylogenetic profiles), or other numerical census-type characters along a phylogeny." ;
@@ -149299,7 +142149,7 @@ Cosinor Online, cosinor on the web, is a simple web-based application evaluating
     sc:url "http://www.iro.umontreal.ca/~csuros/gene_content/count.html" .
 
 <https://bio.tools/countclust> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3170 ;
@@ -149318,7 +142168,7 @@ Cosinor Online, cosinor on the web, is a simple web-based application evaluating
     biotools:primaryContact "Kushal Dey" .
 
 <https://bio.tools/countfitter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0202,
@@ -149338,7 +142188,7 @@ Cosinor Online, cosinor on the web, is a simple web-based application evaluating
         "Michał Burdukiewicz" .
 
 <https://bio.tools/counting-colors-in-skin-lesion> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3382,
@@ -149354,7 +142204,7 @@ Cosinor Online, cosinor on the web, is a simple web-based application evaluating
     biotools:primaryContact "Tyler Coye" .
 
 <https://bio.tools/counting-spanning-trees-flacets-graph> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_3070,
@@ -149374,14 +142224,14 @@ Cosinor Online, cosinor on the web, is a simple web-based application evaluating
 
 <https://bio.tools/countnumber> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1975" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1093/nar/gkw343>,
@@ -149399,18 +142249,18 @@ Cosinor Online, cosinor on the web, is a simple web-based application evaluating
 
 <https://bio.tools/countnumber_parallel> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1093/nar/gkw343>,
@@ -149428,18 +142278,18 @@ Cosinor Online, cosinor on the web, is a simple web-based application evaluating
 
 <https://bio.tools/countreadgcpercent> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1975" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1975" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1093/nar/gkw343>,
@@ -149456,7 +142306,7 @@ Cosinor Online, cosinor on the web, is a simple web-based application evaluating
     biotools:primaryContact "Galaxy Support Team" .
 
 <https://bio.tools/countsimqc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3068,
@@ -149477,7 +142327,7 @@ Cosinor Online, cosinor on the web, is a simple web-based application evaluating
         "Mark Robinson" .
 
 <https://bio.tools/couplecoc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3308,
         edam:topic_3474 ;
@@ -149491,7 +142341,7 @@ Cosinor Online, cosinor on the web, is a simple web-based application evaluating
     sc:url "https://github.com/cuhklinlab/coupleCoC" .
 
 <https://bio.tools/cov-abdab> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_2830,
@@ -149506,7 +142356,7 @@ Cosinor Online, cosinor on the web, is a simple web-based application evaluating
     sc:url "http://opig.stats.ox.ac.uk/webapps/covabdab/" .
 
 <https://bio.tools/cov-genome-tracker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0199,
@@ -149525,7 +142375,7 @@ Cosinor Online, cosinor on the web, is a simple web-based application evaluating
     sc:url "http://cov.genometracker.org" .
 
 <https://bio.tools/cov-glue> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0199,
@@ -149538,8 +142388,32 @@ Cosinor Online, cosinor on the web, is a simple web-based application evaluating
     sc:name "CoV-GLUE" ;
     sc:url "http://cov-glue.cvr.gla.ac.uk" .
 
+<https://bio.tools/cov-hipathia> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0602,
+        edam:topic_0634 ;
+    sc:citation <https://doi.org/10.1038/s41597-020-0477-8>,
+        <https://doi.org/10.1186/s13040-021-00234-1>,
+        <https://doi.org/10.15252/msb.202110387>,
+        "pmcid:PMC7200764",
+        "pmcid:PMC7817765",
+        "pmcid:PMC8524328",
+        "pubmed:32371892",
+        "pubmed:33478554",
+        "pubmed:34664389" ;
+    sc:description "A web tool implements a mechanistic model of human signaling for the interpretation of the consequences of the combined changes of gene expression levels and/or genomic mutations in the context of signalling pathways known to be involved in the infection by SARS-CoV-2, which are updated with the curated versions released by the COVID-19 Disease Map curation project ." ;
+    sc:isAccessibleForFree true ;
+    sc:name "CoV-Hipathia" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <http://hipathia.babelomics.org/covid19/doc/doku.php> ;
+    sc:softwareVersion "1.0.0" ;
+    sc:url "http://hipathia.babelomics.org/covid19/" .
+
 <https://bio.tools/cov-seq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0622,
@@ -149555,44 +142429,67 @@ Cosinor Online, cosinor on the web, is a simple web-based application evaluating
     sc:name "CoV-Seq" ;
     sc:url "http://covseq.baidu.com/" .
 
+<https://bio.tools/cov19vaxkb> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0089,
+        edam:topic_0091,
+        edam:topic_3379,
+        edam:topic_3966 ;
+    sc:citation <https://doi.org/10.1016/J.JVACX.2021.100139>,
+        "pmcid:PMC8716025",
+        "pubmed:34981039" ;
+    sc:description "Cov19VaxKB: COVID-19 Vaccine Knowledge Base." ;
+    sc:featureList edam:operation_0416,
+        edam:operation_0560,
+        edam:operation_2422,
+        edam:operation_3454,
+        edam:operation_3968 ;
+    sc:isAccessibleForFree true ;
+    sc:name "Cov19VaxKB" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://www.violinet.org/cov19vaxkb/" .
+
 <https://bio.tools/cov2html> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3005" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1975" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0102,
@@ -149616,7 +142513,7 @@ Cosinor Online, cosinor on the web, is a simple web-based application evaluating
     sc:url "https://mmonot.eu/COV2HTML" .
 
 <https://bio.tools/cov2id> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0781 ;
     sc:description "CoV2ID provides a complete, quality checked and regularly updated list of oligonucleotides for SARS-CoV-2. The database evaluates available therapeutic and detection protocols according to the virus genetic diversity." ;
@@ -149624,8 +142521,30 @@ Cosinor Online, cosinor on the web, is a simple web-based application evaluating
     sc:url "http://covid.portugene.com/cgi-bin/COVid_home.cgi" ;
     biotools:primaryContact "João Carneiro" .
 
+<https://bio.tools/cov2k> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0199,
+        edam:topic_0781,
+        edam:topic_3305,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1038/S41597-022-01348-9>,
+        "pmcid:PMC9160032",
+        "pubmed:35650205" ;
+    sc:description "CoV2K is available for exploration as a graph that can be queried through a RESTful API addressing single entities or paths through their relationships" ;
+    sc:featureList edam:operation_0224,
+        edam:operation_3280,
+        edam:operation_3431,
+        edam:operation_3432,
+        edam:operation_3436 ;
+    sc:license "Apache-2.0" ;
+    sc:name "CoV2K" ;
+    sc:softwareHelp <http://gmql.eu/cov2k/api/> ;
+    sc:url "https://github.com/DEIB-GECO/cov2k_data_collector/" .
+
 <https://bio.tools/cov3d> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0154,
@@ -149641,10 +142560,9 @@ Cosinor Online, cosinor on the web, is a simple web-based application evaluating
 
 <https://bio.tools/covacs> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1234" ;
-            sc:name "Sequence set (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1234" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1234" ;
+            sc:name "Sequence set (nucleic acid)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2885 ;
     sc:citation "pubmed:29402227" ;
@@ -149659,7 +142577,7 @@ Cosinor Online, cosinor on the web, is a simple web-based application evaluating
     sc:url "https://bioinformatics.cineca.it/covacs/" .
 
 <https://bio.tools/covain> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_2259,
         edam:topic_2269,
@@ -149674,7 +142592,7 @@ Cosinor Online, cosinor on the web, is a simple web-based application evaluating
     sc:url "http://www.univie.ac.at/mosys/software.html" .
 
 <https://bio.tools/coval> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2885 ;
     sc:citation <https://doi.org/10.1371/journal.pone.0075402>,
@@ -149689,8 +142607,15 @@ Cosinor Online, cosinor on the web, is a simple web-based application evaluating
     sc:softwareVersion "1.5" ;
     sc:url "http://sourceforge.net/projects/coval105/" .
 
+<https://bio.tools/covalentdock> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:description "CovalentDocking" ;
+    sc:name "CovalentDock" ;
+    sc:softwareVersion "2.0-beta-04" ;
+    sc:url "http://docking.sce.ntu.edu.sg/." .
+
 <https://bio.tools/covalentdock_cloud> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2275,
@@ -149710,7 +142635,7 @@ Cosinor Online, cosinor on the web, is a simple web-based application evaluating
     biotools:primaryContact "CovalentDock Support" .
 
 <https://bio.tools/covalentindb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0154,
@@ -149727,7 +142652,7 @@ Cosinor Online, cosinor on the web, is a simple web-based application evaluating
     sc:url "http://cadd.zju.edu.cn/cidb/" .
 
 <https://bio.tools/covam> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3322,
@@ -149743,7 +142668,7 @@ Cosinor Online, cosinor on the web, is a simple web-based application evaluating
         "Vishwas Sharma" .
 
 <https://bio.tools/covariance-nmr-toolbox> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0593,
         edam:topic_3314,
@@ -149759,7 +142684,7 @@ Cosinor Online, cosinor on the web, is a simple web-based application evaluating
     biotools:primaryContact "David Snyder" .
 
 <https://bio.tools/covasim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0781,
         edam:topic_3305,
@@ -149775,18 +142700,18 @@ Cosinor Online, cosinor on the web, is a simple web-based application evaluating
 
 <https://bio.tools/covd> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3720" ;
-            sc:name "Geographic location" ;
-            sc:sameAs "http://edamontology.org/data_3720" ] ;
+            sc:additionalType "http://edamontology.org/data_3720" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Geographic location" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2887" ;
-            sc:name "Nucleic acid sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2887" ],
+            sc:additionalType "http://edamontology.org/data_3720" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Geographic location" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3720" ;
-            sc:name "Geographic location" ;
-            sc:sameAs "http://edamontology.org/data_3720" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2887" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Nucleic acid sequence record" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Bioinformatics portal" ;
     sc:applicationSubCategory edam:topic_0781 ;
     sc:description "Czech COVID-19 genomics portal" ;
@@ -149797,7 +142722,7 @@ Cosinor Online, cosinor on the web, is a simple web-based application evaluating
     sc:url "https://virus.img.cas.cz/" .
 
 <https://bio.tools/covdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0199,
@@ -149813,7 +142738,7 @@ Cosinor Online, cosinor on the web, is a simple web-based application evaluating
     sc:url "http://covdb.popgenetics.net" .
 
 <https://bio.tools/coveb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3569 ;
@@ -149832,18 +142757,18 @@ Cosinor Online, cosinor on the web, is a simple web-based application evaluating
 
 <https://bio.tools/covenntree> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3028" ;
-            sc:name "Taxonomy" ;
-            sc:sameAs "http://edamontology.org/data_3028" ] ;
+            sc:additionalType "http://edamontology.org/data_3028" ;
+            sc:encodingFormat "http://edamontology.org/format_3751" ;
+            sc:name "Taxonomy" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ],
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Pathway or network" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2526" ;
-            sc:name "Text data" ;
-            sc:sameAs "http://edamontology.org/data_2526" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2526" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Text data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -149865,14 +142790,14 @@ Cosinor Online, cosinor on the web, is a simple web-based application evaluating
 
 <https://bio.tools/coveragegff> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2305" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1975" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1093/nar/gkw343>,
@@ -149890,26 +142815,26 @@ Cosinor Online, cosinor on the web, is a simple web-based application evaluating
 
 <https://bio.tools/coverageview> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2012" ;
-            sc:name "Sequence coordinates" ;
-            sc:sameAs "http://edamontology.org/data_2012" ],
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_3006" ;
+            sc:name "Annotation track" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_3006" ;
+            sc:name "Sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ] ;
+            sc:additionalType "http://edamontology.org/data_2012" ;
+            sc:encodingFormat "http://edamontology.org/format_3006" ;
+            sc:name "Sequence coordinates" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ],
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Plot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1636" ;
-            sc:name "Heat map" ;
-            sc:sameAs "http://edamontology.org/data_1636" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1636" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Heat map" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -149931,7 +142856,7 @@ Cosinor Online, cosinor on the web, is a simple web-based application evaluating
     biotools:primaryContact "Ernesto Lowy" .
 
 <https://bio.tools/coverifi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3474 ;
@@ -149948,22 +142873,21 @@ Cosinor Online, cosinor on the web, is a simple web-based application evaluating
 
 <https://bio.tools/coverm> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1383" ;
-            sc:name "Nucleic acid sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_1383" ],
+            sc:additionalType "http://edamontology.org/data_1383" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Nucleic acid sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3494" ;
-            sc:name "DNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3494" ],
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:encodingFormat "http://edamontology.org/format_2200" ;
+            sc:name "DNA sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3494" ;
-            sc:name "DNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3494" ] ;
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "DNA sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0951" ;
-            sc:name "Statistical estimate score" ;
-            sc:sameAs "http://edamontology.org/data_0951" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0951" ;
+            sc:name "Statistical estimate score" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0091 ;
     sc:description "Read coverage calculator for metagenomics" ;
@@ -149977,7 +142901,7 @@ Cosinor Online, cosinor on the web, is a simple web-based application evaluating
     sc:url "https://github.com/wwood/CoverM" .
 
 <https://bio.tools/covex> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0202,
@@ -149994,7 +142918,7 @@ Cosinor Online, cosinor on the web, is a simple web-based application evaluating
     sc:url "https://exbio.wzw.tum.de/covex/" .
 
 <https://bio.tools/covid-19-antibody-therapeutics-tracker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_2830,
         edam:topic_3374,
@@ -150011,7 +142935,7 @@ Cosinor Online, cosinor on the web, is a simple web-based application evaluating
     sc:url "https://chineseantibody.org/covid-19-track/" .
 
 <https://bio.tools/covid-19-biomarkers-oncomx> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0634,
@@ -150026,7 +142950,7 @@ Cosinor Online, cosinor on the web, is a simple web-based application evaluating
     sc:url "https://data.oncomx.org/covid19" .
 
 <https://bio.tools/covid-19-bioreproducibility> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0154,
         edam:topic_0209,
@@ -150045,7 +142969,7 @@ Cosinor Online, cosinor on the web, is a simple web-based application evaluating
     sc:url "http://Covid-19.bioreproducibility.org" .
 
 <https://bio.tools/covid-19-cg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0632,
@@ -150064,7 +142988,7 @@ Cosinor Online, cosinor on the web, is a simple web-based application evaluating
     sc:url "http://covidcg.org" .
 
 <https://bio.tools/covid-19-ct-cxr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0218,
         edam:topic_3303,
@@ -150086,7 +143010,7 @@ Cosinor Online, cosinor on the web, is a simple web-based application evaluating
     biotools:primaryContact "Zhiyong Lu" .
 
 <https://bio.tools/covid-19-data-analysis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3305,
@@ -150104,7 +143028,7 @@ Cosinor Online, cosinor on the web, is a simple web-based application evaluating
     biotools:primaryContact "Andrea Augello" .
 
 <https://bio.tools/covid-19-data-portal> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3068,
@@ -150120,7 +143044,7 @@ Cosinor Online, cosinor on the web, is a simple web-based application evaluating
         <https://orcid.org/0000-0003-1256-7306> .
 
 <https://bio.tools/covid-19-knowledge-graph> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0621,
@@ -150134,7 +143058,7 @@ Cosinor Online, cosinor on the web, is a simple web-based application evaluating
     sc:url "https://github.com/covid19kg" .
 
 <https://bio.tools/covid-19-mutation-browser> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0622,
@@ -150151,7 +143075,7 @@ Cosinor Online, cosinor on the web, is a simple web-based application evaluating
     sc:url "http://covid-19.dnageography.com" .
 
 <https://bio.tools/covid-19-ontology> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Ontology" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0218,
@@ -150170,7 +143094,7 @@ Cosinor Online, cosinor on the web, is a simple web-based application evaluating
     sc:url "https://bioportal.bioontology.org/ontologies/COVID-19" .
 
 <https://bio.tools/covid-19-preview> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0218,
@@ -150183,12 +143107,16 @@ Cosinor Online, cosinor on the web, is a simple web-based application evaluating
     sc:featureList edam:operation_2421,
         edam:operation_2422,
         edam:operation_3778 ;
+    sc:isAccessibleForFree true ;
     sc:name "COVID-19 preVIEW" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
     sc:softwareHelp <https://preview.zbmed.de/tutorial> ;
     sc:url "https://preview.zbmed.de" .
 
 <https://bio.tools/covid-19-scenarios> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3305,
         edam:topic_3315,
@@ -150204,7 +143132,7 @@ The primary purpose of the tool is to explore the dynamics of COVID19 cases and
     sc:url "http://covid19-scenarios.org" .
 
 <https://bio.tools/covid-19-signsym> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0218,
         edam:topic_0769,
@@ -150223,7 +143151,7 @@ The primary purpose of the tool is to explore the dynamics of COVID19 cases and
         "Masoud Rouhizadeh" .
 
 <https://bio.tools/covid-19-testnorm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0218,
@@ -150243,7 +143171,7 @@ Large observational data networks that leverage routine clinical practice data i
     sc:url "https://clamp.uth.edu/covid/loinc.php" .
 
 <https://bio.tools/covid-19_dashboard> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0781,
@@ -150256,8 +143184,30 @@ Large observational data networks that leverage routine clinical practice data i
     sc:url "https://chschoenenberger.shinyapps.io/covid19_dashboard/" ;
     biotools:primaryContact "Christoph Schönenberger" .
 
+<https://bio.tools/covid-19_gph> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_3301,
+        edam:topic_3305,
+        edam:topic_3418,
+        edam:topic_3474,
+        edam:topic_3577 ;
+    sc:citation <https://doi.org/10.1186/S12879-022-07219-3>,
+        "pmcid:PMC9035978",
+        "pubmed:35468755" ;
+    sc:description "A database for tracking the contribution of genomics and precision health to the COVID-19 pandemic response." ;
+    sc:featureList edam:operation_0306,
+        edam:operation_2421 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "COVID-19 GPH" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://phgkb.cdc.gov/PHGKB/coVInfoStartPage.action" .
+
 <https://bio.tools/covid-19_knetminer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_3336 ;
@@ -150272,7 +143222,7 @@ Large observational data networks that leverage routine clinical practice data i
     biotools:primaryContact <https://orcid.org/0000-0002-0438-9266> .
 
 <https://bio.tools/covid-19_l_ove> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0621,
@@ -150287,7 +143237,7 @@ Large observational data networks that leverage routine clinical practice data i
     sc:url "https://app.iloveevidence.com/covid19" .
 
 <https://bio.tools/covid-19riskprediction> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3305,
@@ -150304,7 +143254,7 @@ Large observational data networks that leverage routine clinical practice data i
     biotools:primaryContact "Amburose Sekar" .
 
 <https://bio.tools/covid-abs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3305,
@@ -150319,7 +143269,7 @@ Large observational data networks that leverage routine clinical practice data i
     sc:url "https://github.com/petroniocandido/COVID19_AgentBasedSimulation" .
 
 <https://bio.tools/covid-align> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0160,
@@ -150336,7 +143286,7 @@ Large observational data networks that leverage routine clinical practice data i
     sc:url "https://covalign.pasteur.cloud" .
 
 <https://bio.tools/covid-ct-mask-net> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3452,
@@ -150352,7 +143302,7 @@ Large observational data networks that leverage routine clinical practice data i
     sc:url "https://github.com/AlexTS1980/COVID-CT-Mask-Net" .
 
 <https://bio.tools/covid-deeppredictor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0634,
@@ -150371,7 +143321,7 @@ Large observational data networks that leverage routine clinical practice data i
     biotools:primaryContact "Indrajit Saha" .
 
 <https://bio.tools/covid-gui> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3305,
@@ -150389,7 +143339,7 @@ Large observational data networks that leverage routine clinical practice data i
     biotools:primaryContact "Peter Seibold" .
 
 <https://bio.tools/covid-kop> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3068,
         edam:topic_3071 ;
@@ -150399,7 +143349,7 @@ Large observational data networks that leverage routine clinical practice data i
     sc:url "https://covidkop.renci.org/" .
 
 <https://bio.tools/covid-net> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Bioinformatics portal" ;
     sc:applicationSubCategory edam:topic_3303,
         edam:topic_3384,
@@ -150416,8 +143366,49 @@ Large observational data networks that leverage routine clinical practice data i
         "Windows" ;
     sc:url "http://covid-net.ml" .
 
+<https://bio.tools/covid-one-hi> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0121,
+        edam:topic_0154,
+        edam:topic_0203,
+        edam:topic_3303,
+        edam:topic_3518 ;
+    sc:citation <https://doi.org/10.1016/J.GPB.2021.09.006>,
+        "pmcid:PMC8570443",
+        "pubmed:34748989" ;
+    sc:description "The One-stop Database for COVID-19 Specific Humoral Immunity and Clinical Parameters." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_3659 ;
+    sc:isAccessibleForFree true ;
+    sc:name "COVID-ONE-hi" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://www.covid-one.cn" .
+
+<https://bio.tools/covid-opt-ainet> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workbench",
+        "Workflow" ;
+    sc:applicationSubCategory edam:topic_3305,
+        edam:topic_3384,
+        edam:topic_3452,
+        edam:topic_3474,
+        edam:topic_3520 ;
+    sc:citation <https://doi.org/10.1002/IMA.22695>,
+        "pmcid:PMC9015255",
+        "pubmed:35465215" ;
+    sc:description "A clinical decision support system for COVID-19 detection." ;
+    sc:featureList edam:operation_3443,
+        edam:operation_3659,
+        edam:operation_3936 ;
+    sc:license "Not licensed" ;
+    sc:name "COVID-opt-aiNet" ;
+    sc:url "https://github.com/faizakhan1925/COVID-opt-aiNet" .
+
 <https://bio.tools/covid-predictor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0781,
@@ -150432,8 +143423,32 @@ Large observational data networks that leverage routine clinical practice data i
     sc:name "COVID-Predictor" ;
     sc:url "http://www.nitttrkol.ac.in/indrajit/projects/COVID-Predictor/" .
 
+<https://bio.tools/covid-profiler> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application",
+        "Workflow" ;
+    sc:applicationSubCategory edam:topic_0196,
+        edam:topic_0199,
+        edam:topic_0769,
+        edam:topic_3168,
+        edam:topic_3293 ;
+    sc:citation <https://doi.org/10.1186/S12859-022-04632-Y>,
+        "pmcid:PMC9012066",
+        "pubmed:35428185" ;
+    sc:description "A webserver for the analysis of SARS-CoV-2 sequencing data." ;
+    sc:featureList edam:operation_0323,
+        edam:operation_0326,
+        edam:operation_0567 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "COVID-Profiler" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://genomics.lshtm.ac.uk/" .
+
 <https://bio.tools/covid-sgis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3063,
         edam:topic_3474 ;
@@ -150445,7 +143460,7 @@ Large observational data networks that leverage routine clinical practice data i
     sc:url "https://github.com/Biomedical-Computing-UFPE/Covid-SGIS" .
 
 <https://bio.tools/covid-term> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_3063,
@@ -150459,7 +143474,7 @@ Large observational data networks that leverage routine clinical practice data i
     sc:url "http://covidterm.imicams.ac.cn" .
 
 <https://bio.tools/covid-track> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API",
         "Web application" ;
     sc:applicationSubCategory edam:topic_3063,
@@ -150477,7 +143492,7 @@ Large observational data networks that leverage routine clinical practice data i
     sc:url "https://covidtracking.com" .
 
 <https://bio.tools/covid19-analysis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344 ;
@@ -150492,7 +143507,7 @@ Large observational data networks that leverage routine clinical practice data i
     biotools:primaryContact "Carlos Tapia" .
 
 <https://bio.tools/covid19-data-fitting> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3305,
@@ -150510,7 +143525,7 @@ Large observational data networks that leverage routine clinical practice data i
     biotools:primaryContact "Lorand Gabriel Parajdi" .
 
 <https://bio.tools/covid19-drug-interactions> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0202,
         edam:topic_2640,
@@ -150528,7 +143543,7 @@ Large observational data networks that leverage routine clinical practice data i
     sc:url "http://www.covid19-druginteractions.org" .
 
 <https://bio.tools/covid19-drug-repurposing> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3377,
@@ -150547,7 +143562,7 @@ Large observational data networks that leverage routine clinical practice data i
     sc:url "https://github.com/muntisa/immuno-drug-repurposing-COVID-19" .
 
 <https://bio.tools/covid19-forecasting-ml> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3305,
@@ -150564,7 +143579,7 @@ Large observational data networks that leverage routine clinical practice data i
     biotools:primaryContact "Akhilesh  Kumar" .
 
 <https://bio.tools/covid19-india-spread-animation> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3305,
         edam:topic_3344,
@@ -150581,7 +143596,7 @@ Large observational data networks that leverage routine clinical practice data i
     biotools:primaryContact "Siddharth Kumar" .
 
 <https://bio.tools/covid19-infections> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344 ;
@@ -150597,7 +143612,7 @@ Large observational data networks that leverage routine clinical practice data i
     biotools:primaryContact "ThomasV" .
 
 <https://bio.tools/covid19-infections-eu> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3344,
         edam:topic_3512 ;
@@ -150612,7 +143627,7 @@ Large observational data networks that leverage routine clinical practice data i
     biotools:primaryContact "Emmanuel Olivar" .
 
 <https://bio.tools/covid19-modeling> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3070,
@@ -150630,7 +143645,7 @@ Large observational data networks that leverage routine clinical practice data i
     biotools:primaryContact "JM2" .
 
 <https://bio.tools/covid19-propagation-simulator-simulink> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3305,
@@ -150646,7 +143661,7 @@ Large observational data networks that leverage routine clinical practice data i
     biotools:primaryContact "Pavel Roslovets" .
 
 <https://bio.tools/covid19-realtime-tracking-simulation-indian-states> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344 ;
@@ -150661,7 +143676,7 @@ Large observational data networks that leverage routine clinical practice data i
     biotools:primaryContact "Siddharth Kumar" .
 
 <https://bio.tools/covid19-spread-visualizer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3305,
@@ -150678,7 +143693,7 @@ Large observational data networks that leverage routine clinical practice data i
     biotools:primaryContact "Lateef Adewale Kareem" .
 
 <https://bio.tools/covid19-textanalytics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0218,
         edam:topic_3070,
@@ -150696,7 +143711,7 @@ Large observational data networks that leverage routine clinical practice data i
     biotools:primaryContact "Sohini Sarkar" .
 
 <https://bio.tools/covid19-transmission-model> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3305,
@@ -150715,7 +143730,7 @@ Large observational data networks that leverage routine clinical practice data i
     biotools:primaryContact "Erik Cuevas" .
 
 <https://bio.tools/covid19-world-spread-animation> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3305,
         edam:topic_3344,
@@ -150733,7 +143748,7 @@ Large observational data networks that leverage routine clinical practice data i
     biotools:primaryContact "JM2" .
 
 <https://bio.tools/covid19census> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_2640,
@@ -150751,7 +143766,7 @@ Large observational data networks that leverage routine clinical practice data i
     biotools:primaryContact "Luigi Marchionni" .
 
 <https://bio.tools/covid19data> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3305,
@@ -150768,7 +143783,7 @@ Large observational data networks that leverage routine clinical practice data i
     biotools:primaryContact "Matthias Chung" .
 
 <https://bio.tools/covid19db> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -150790,7 +143805,7 @@ Large observational data networks that leverage routine clinical practice data i
     sc:url "http://hpcc.siat.ac.cn/covid19db" .
 
 <https://bio.tools/covid19riskai> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Bioinformatics portal" ;
     sc:applicationSubCategory edam:topic_3379,
         edam:topic_3577 ;
@@ -150802,7 +143817,7 @@ Large observational data networks that leverage routine clinical practice data i
     sc:url "https://covid19risk.ai/" .
 
 <https://bio.tools/covid19spread-model> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3305,
@@ -150820,7 +143835,7 @@ Large observational data networks that leverage routine clinical practice data i
     biotools:primaryContact "Deepesh B" .
 
 <https://bio.tools/covidc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0605,
         edam:topic_3384,
@@ -150840,7 +143855,7 @@ Large observational data networks that leverage routine clinical practice data i
     biotools:primaryContact <https://orcid.org/0000-0001-7691-5715> .
 
 <https://bio.tools/covidctnet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_3384,
         edam:topic_3452,
@@ -150854,7 +143869,7 @@ Large observational data networks that leverage routine clinical practice data i
     sc:url "https://github.com/mohofar/covidctnet" .
 
 <https://bio.tools/covidep> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0092,
@@ -150881,7 +143896,7 @@ Large observational data networks that leverage routine clinical practice data i
     sc:url "https://covidep.ust.hk" .
 
 <https://bio.tools/covidex> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3299,
@@ -150897,7 +143912,7 @@ Large observational data networks that leverage routine clinical practice data i
     sc:url "http://covidex.unlu.edu.ar/" .
 
 <https://bio.tools/covidexpress> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0625,
@@ -150915,8 +143930,31 @@ Large observational data networks that leverage routine clinical practice data i
     sc:url "http://143.244.212.58/" ;
     biotools:primaryContact <https://orcid.org/0000-0003-0099-858X> .
 
+<https://bio.tools/covidgraph> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0089,
+        edam:topic_0781,
+        edam:topic_3305,
+        edam:topic_3324,
+        edam:topic_3379 ;
+    sc:citation <https://doi.org/10.3233/SHTI220565>,
+        "pubmed:35612186" ;
+    sc:description "CovidGraph, developed by the HealthECCO community, is a platform designed to foster research and data exploration to fight COVID-19." ;
+    sc:featureList edam:operation_0224,
+        edam:operation_0337,
+        edam:operation_3431 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "CovidGraph" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://github.com/covidgraph/documentation> ;
+    sc:url "https://healthecco.org/covidgraph/" .
+
 <https://bio.tools/covidhunter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_3305,
         edam:topic_3324 ;
@@ -150930,7 +143968,7 @@ Large observational data networks that leverage routine clinical practice data i
     biotools:primaryContact <https://orcid.org/0000-0002-6117-3701> .
 
 <https://bio.tools/covidium> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0128,
@@ -150951,7 +143989,7 @@ Large observational data networks that leverage routine clinical practice data i
     sc:url "http://kraza.in/covidium/" .
 
 <https://bio.tools/covidmine> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application",
         "Web service" ;
@@ -150974,7 +144012,7 @@ and nucleotide sequences from isolates deposited in Genbank""" ;
     sc:url "http://covid.apps.intermine.org/" .
 
 <https://bio.tools/covidmulti-net> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_3322,
         edam:topic_3324,
@@ -150989,7 +144027,7 @@ and nucleotide sequences from isolates deposited in Genbank""" ;
         "Shahab S. Band" .
 
 <https://bio.tools/covidnlp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0218,
         edam:topic_0634,
@@ -151004,7 +144042,7 @@ and nucleotide sequences from isolates deposited in Genbank""" ;
     sc:url "http://covidnlp.tavlab.iiitd.edu.in/" .
 
 <https://bio.tools/covidomic> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3292,
@@ -151025,7 +144063,7 @@ and nucleotide sequences from isolates deposited in Genbank""" ;
     sc:url "http://covidomic.com/" .
 
 <https://bio.tools/covidphy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0084,
@@ -151045,7 +144083,7 @@ and nucleotide sequences from isolates deposited in Genbank""" ;
     sc:url "http://covidphy.eu" .
 
 <https://bio.tools/covidprognosis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -151067,7 +144105,7 @@ and nucleotide sequences from isolates deposited in Genbank""" ;
     sc:url "http://14.139.62.220/covidprognosis/" .
 
 <https://bio.tools/covidrugnet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0202,
         edam:topic_3305,
@@ -151085,8 +144123,28 @@ and nucleotide sequences from isolates deposited in Genbank""" ;
     sc:name "COVIDrugNet" ;
     sc:url "http://compmedchem.unibo.it/covidrugnet" .
 
+<https://bio.tools/covidscreen> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0621,
+        edam:topic_2640,
+        edam:topic_3305 ;
+    sc:citation <https://doi.org/10.1186/S12889-022-13718-4>,
+        "pmcid:PMC9284969",
+        "pubmed:35840948" ;
+    sc:description "A web app and R Package for assessing asymptomatic COVID-19 testing strategies." ;
+    sc:featureList edam:operation_0337 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "covidscreen" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://sjbiostat.shinyapps.io/covidscreen/" .
+
 <https://bio.tools/covidsim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0781,
         edam:topic_3305,
@@ -151101,8 +144159,27 @@ and nucleotide sequences from isolates deposited in Genbank""" ;
     sc:url "http://covidsim.eu/" ;
     biotools:primaryContact "Nick Wilson" .
 
+<https://bio.tools/covidspread> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_2269,
+        edam:topic_3324 ;
+    sc:citation <https://doi.org/10.12688/F1000RESEARCH.73969.1> ;
+    sc:description "Real-time prediction of COVID-19 spread based on time-series modelling." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_2426,
+        edam:operation_3927 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "COVIDSpread" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/VafaeeLab/COVIDSpread" .
+
 <https://bio.tools/covidstrategycalculator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3063,
         edam:topic_3305,
@@ -151117,7 +144194,7 @@ and nucleotide sequences from isolates deposited in Genbank""" ;
     sc:url "https://covidstrategycalculator.github.io/index.html" .
 
 <https://bio.tools/covidxraynet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_3303,
         edam:topic_3384,
@@ -151135,7 +144212,7 @@ CovidXrayNet model improves the detection rate of coronavirus 2019 (COVID-19), f
     biotools:primaryContact <https://orcid.org/0000-0001-5622-1601> .
 
 <https://bio.tools/coviedb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0154,
@@ -151149,7 +144226,7 @@ CovidXrayNet model improves the detection rate of coronavirus 2019 (COVID-19), f
     sc:url "http://biopharm.zju.edu.cn/coviedb/" .
 
 <https://bio.tools/covision> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0621,
@@ -151161,7 +144238,7 @@ CovidXrayNet model improves the detection rate of coronavirus 2019 (COVID-19), f
     sc:url "http://covision.tavlab.iiitd.edu.in" .
 
 <https://bio.tools/covizu> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0622,
@@ -151179,8 +144256,26 @@ CovidXrayNet model improves the detection rate of coronavirus 2019 (COVID-19), f
         "Windows" ;
     sc:url "https://github.com/PoonLab/covizu" .
 
+<https://bio.tools/covnet> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workbench" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_3322,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.3389/FDGTH.2021.799067>,
+        "pmcid:PMC8761863",
+        "pubmed:35047869" ;
+    sc:description "A Transfer Learning Framework for Automatic COVID-19 Detection From Crowd-Sourced Cough Sounds." ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "CovNet" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/ychang74/CovNet" .
+
 <https://bio.tools/covnorm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3169,
@@ -151203,7 +144298,7 @@ CovidXrayNet model improves the detection rate of coronavirus 2019 (COVID-19), f
     sc:url "https://github.com/kaistcbfg/covNormRpkg" .
 
 <https://bio.tools/covpdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0130,
@@ -151225,7 +144320,7 @@ CovidXrayNet model improves the detection rate of coronavirus 2019 (COVID-19), f
     sc:url "http://www.pharmbioinf.uni-freiburg.de/covpdb/" .
 
 <https://bio.tools/covpepdock> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
         edam:topic_0632,
@@ -151242,7 +144337,7 @@ CovidXrayNet model improves the detection rate of coronavirus 2019 (COVID-19), f
     biotools:primaryContact "Nir London" .
 
 <https://bio.tools/covradar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0769,
@@ -151260,7 +144355,7 @@ CovidXrayNet model improves the detection rate of coronavirus 2019 (COVID-19), f
         <https://orcid.org/0000-0003-4589-9809> .
 
 <https://bio.tools/covrna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3308 ;
@@ -151280,16 +144375,53 @@ CovidXrayNet model improves the detection rate of coronavirus 2019 (COVID-19), f
     sc:url "http://bioconductor.org/packages/release/bioc/html/covRNA.html" ;
     biotools:primaryContact "Lara Urban" .
 
+<https://bio.tools/covsampler> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0602,
+        edam:topic_3053,
+        edam:topic_3293 ;
+    sc:citation <https://doi.org/10.1093/VE/VEAC071>,
+        "pmcid:PMC9384632" ;
+    sc:description "A Subsampling Method with Balanced Genetic Diversity for Large-Scale SARS-CoV-2 Genome Data Sets." ;
+    sc:featureList edam:operation_0323 ;
+    sc:license "Other" ;
+    sc:name "covSampler" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://www.covsampler.net" .
+
+<https://bio.tools/covspectrum> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0089,
+        edam:topic_0154,
+        edam:topic_0199 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAB856>,
+        "pubmed:34954792" ;
+    sc:description "CoV-Spectrum is an interactive tool to analyze and discover variants of SARS-CoV-2." ;
+    sc:featureList edam:operation_0224,
+        edam:operation_0337,
+        edam:operation_3197 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "CoV-Spectrum" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://cov-spectrum.org/explore/Denmark/AllSamples/Past6M" .
+
 <https://bio.tools/covtobed> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1383" ;
-            sc:name "Nucleic acid sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_1383" ] ;
+            sc:additionalType "http://edamontology.org/data_1383" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Nucleic acid sequence alignment" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_3003" ;
+            sc:name "Annotation track" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.21105/joss.02119> ;
@@ -151303,13 +144435,13 @@ CovidXrayNet model improves the detection rate of coronavirus 2019 (COVID-19), f
     sc:url "https://github.com/telatin/covtobed" .
 
 <https://bio.tools/covtools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "Coverage analysis from BAM files supporting target regions in BED or GFF formats" ;
     sc:name "covtools" ;
     sc:url "https://telatin.github.io/covtools" .
 
 <https://bio.tools/covxnet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0605,
         edam:topic_3382,
@@ -151328,7 +144460,7 @@ With the recent outbreak of COVID-19, fast diagnostic testing has become one of
     sc:url "https://github.com/Perceptron21/CovXNet" .
 
 <https://bio.tools/cowpi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3174,
@@ -151348,7 +144480,7 @@ With the recent outbreak of COVID-19, fast diagnostic testing has become one of
     biotools:primaryContact "Toby J. Wilkinson" .
 
 <https://bio.tools/cox-nnet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3303,
         edam:topic_3474 ;
@@ -151362,7 +144494,7 @@ With the recent outbreak of COVID-19, fast diagnostic testing has become one of
     biotools:primaryContact <https://orcid.org/0000-0003-1672-6917> .
 
 <https://bio.tools/coxbase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0625,
@@ -151379,7 +144511,7 @@ With the recent outbreak of COVID-19, fast diagnostic testing has become one of
     sc:url "https://coxbase.q-gaps.de" .
 
 <https://bio.tools/coxphlb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_2269 ;
@@ -151395,7 +144527,7 @@ With the recent outbreak of COVID-19, fast diagnostic testing has become one of
     sc:url "http://CRAN.R-project.org/package=CoxPhLb" .
 
 <https://bio.tools/coxpresdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0780,
@@ -151415,7 +144547,7 @@ With the recent outbreak of COVID-19, fast diagnostic testing has become one of
     biotools:primaryContact "COXPRESSdb Support" .
 
 <https://bio.tools/cozine> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0659,
@@ -151433,7 +144565,7 @@ With the recent outbreak of COVID-19, fast diagnostic testing has become one of
     sc:url "https://github.com/MinJinHa/COZINE" .
 
 <https://bio.tools/cpa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0602,
@@ -151450,7 +144582,7 @@ With the recent outbreak of COVID-19, fast diagnostic testing has become one of
     sc:url "https://www.cebitec.uni-bielefeld.de/groups/brf/software/cpa/index.html" .
 
 <https://bio.tools/cpa-consensus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -151468,7 +144600,7 @@ With the recent outbreak of COVID-19, fast diagnostic testing has become one of
     sc:url "http://cpa.tinnguyen-lab.com" .
 
 <https://bio.tools/cpacpp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -151489,7 +144621,7 @@ With the recent outbreak of COVID-19, fast diagnostic testing has become one of
     sc:url "http://cbb1.ut.ac.ir/CpACpP/Index" .
 
 <https://bio.tools/cpad> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0121,
@@ -151507,7 +144639,7 @@ With the recent outbreak of COVID-19, fast diagnostic testing has become one of
     sc:url "https://web.iitm.ac.in/bioinfo2/cpad2/index.html" .
 
 <https://bio.tools/cpafold> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0130,
         edam:topic_0153,
@@ -151530,7 +144662,7 @@ With the recent outbreak of COVID-19, fast diagnostic testing has become one of
     sc:url "http://cpafold.bioinfo.se" .
 
 <https://bio.tools/cpag> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0634,
@@ -151546,7 +144678,7 @@ With the recent outbreak of COVID-19, fast diagnostic testing has become one of
     sc:url "http://sourceforge.net/projects/cpag/" .
 
 <https://bio.tools/cpat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0659,
@@ -151564,7 +144696,7 @@ With the recent outbreak of COVID-19, fast diagnostic testing has become one of
     sc:url "http://lilab.research.bcm.edu/cpat/" .
 
 <https://bio.tools/cpbayes> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3517,
@@ -151582,7 +144714,7 @@ With the recent outbreak of COVID-19, fast diagnostic testing has become one of
     biotools:primaryContact "Arunabha Majumdar" .
 
 <https://bio.tools/cpc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0160,
@@ -151612,10 +144744,10 @@ With the recent outbreak of COVID-19, fast diagnostic testing has become one of
 
 <https://bio.tools/cpc2> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3496" ;
-            sc:name "RNA sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_3496" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3496" ;
+            sc:encodingFormat "http://edamontology.org/format_2306" ;
+            sc:name "RNA sequence (raw)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0099,
@@ -151636,7 +144768,7 @@ With the recent outbreak of COVID-19, fast diagnostic testing has become one of
     sc:url "http://cpc2.cbi.pku.edu.cn/" .
 
 <https://bio.tools/cpdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0128,
@@ -151652,8 +144784,31 @@ With the recent outbreak of COVID-19, fast diagnostic testing has become one of
     sc:softwareVersion "1" ;
     sc:url "http://cpdb.molgen.mpg.de/" .
 
+<https://bio.tools/cpdr> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0208,
+        edam:topic_0634,
+        edam:topic_2640,
+        edam:topic_3170,
+        edam:topic_3577 ;
+    sc:citation <https://doi.org/10.3389/FPHAR.2022.904909>,
+        "pmcid:PMC9252520",
+        "pubmed:35795573" ;
+    sc:description "Cancer Personalized Drug Recommendation (CPDR). A R Package of personalized drugs for patients with cancer by reversing individual disease signatures." ;
+    sc:featureList edam:operation_0313,
+        edam:operation_3223,
+        edam:operation_4009 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "CPDR" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/AllenSpike/CPDR" .
+
 <https://bio.tools/cpdseqer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Script" ;
     sc:applicationSubCategory edam:topic_0622,
@@ -151673,7 +144828,7 @@ With the recent outbreak of COVID-19, fast diagnostic testing has become one of
     sc:url "https://github.com/shengqh/cpdseqer" .
 
 <https://bio.tools/cpe-sldi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_3170,
@@ -151685,7 +144840,7 @@ With the recent outbreak of COVID-19, fast diagnostic testing has become one of
     sc:url "https://github.com/chenxgscuec/CPESLDI" .
 
 <https://bio.tools/cpeltdm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_2269,
         edam:topic_3295,
@@ -151701,10 +144856,10 @@ With the recent outbreak of COVID-19, fast diagnostic testing has become one of
 
 <https://bio.tools/cpfp> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3654" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -151724,7 +144879,7 @@ With the recent outbreak of COVID-19, fast diagnostic testing has become one of
     sc:url "http://cpfp.sourceforge.net" .
 
 <https://bio.tools/cpg_transformer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0749,
@@ -151747,7 +144902,7 @@ With the recent outbreak of COVID-19, fast diagnostic testing has become one of
     sc:url "https://github.com/gdewael/cpg-transformer" .
 
 <https://bio.tools/cpgavas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654 ;
     sc:citation <https://doi.org/10.1186/1471-2164-13-715>,
@@ -151765,7 +144920,7 @@ With the recent outbreak of COVID-19, fast diagnostic testing has become one of
     sc:url "http://www.herbalgenomics.org/0506/cpgavas/analyzer/home" .
 
 <https://bio.tools/cpgdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0623,
@@ -151783,7 +144938,7 @@ With the recent outbreak of COVID-19, fast diagnostic testing has become one of
     sc:url "http://www.gndu.ac.in/CpGDB" .
 
 <https://bio.tools/cpgmotifs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3169,
@@ -151805,22 +144960,18 @@ With the recent outbreak of COVID-19, fast diagnostic testing has become one of
 
 <https://bio.tools/cpgplot> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2887" ;
-            sc:name "Nucleic acid sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2887" ] ;
+            sc:additionalType "http://edamontology.org/data_2887" ;
+            sc:name "Nucleic acid sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1276" ;
-            sc:name "Nucleic acid features" ;
-            sc:sameAs "http://edamontology.org/data_1276" ],
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:name "Image" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ],
+            sc:additionalType "http://edamontology.org/data_1276" ;
+            sc:name "Nucleic acid features" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1276" ;
-            sc:name "Nucleic acid features" ;
-            sc:sameAs "http://edamontology.org/data_1276" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1276" ;
+            sc:name "Nucleic acid features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0157 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -151851,14 +145002,12 @@ With the recent outbreak of COVID-19, fast diagnostic testing has become one of
 
 <https://bio.tools/cpgplot-ebi> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ] ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:name "Nucleic acid sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1276" ;
-            sc:name "Nucleic acid features" ;
-            sc:sameAs "http://edamontology.org/data_1276" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1276" ;
+            sc:name "Nucleic acid features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0157,
         edam:topic_3512 ;
@@ -151880,14 +145029,12 @@ With the recent outbreak of COVID-19, fast diagnostic testing has become one of
 
 <https://bio.tools/cpgreport> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2887" ;
-            sc:name "Nucleic acid sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2887" ] ;
+            sc:additionalType "http://edamontology.org/data_2887" ;
+            sc:name "Nucleic acid sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1276" ;
-            sc:name "Nucleic acid features" ;
-            sc:sameAs "http://edamontology.org/data_1276" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1276" ;
+            sc:name "Nucleic acid features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0157 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -151918,18 +145065,18 @@ With the recent outbreak of COVID-19, fast diagnostic testing has become one of
 
 <https://bio.tools/cphmodels> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ],
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Protein features" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2085" ;
-            sc:name "Structure report" ;
-            sc:sameAs "http://edamontology.org/data_2085" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2085" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Structure report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_2814 ;
@@ -151948,8 +145095,26 @@ With the recent outbreak of COVID-19, fast diagnostic testing has become one of
     sc:url "http://cbs.dtu.dk/services/CPHmodels/" ;
     biotools:primaryContact <http://orcid.org/0000-0001-7885-4311> .
 
+<https://bio.tools/cpi-igae> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workbench",
+        "Workflow" ;
+    sc:applicationSubCategory edam:topic_0209,
+        edam:topic_2275,
+        edam:topic_3373,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1093/BIB/BBAC073>,
+        "pubmed:35275993" ;
+    sc:description "An inductive graph neural network model for compound-protein interaction prediction based on a homogeneous graph." ;
+    sc:featureList edam:operation_2492,
+        edam:operation_3927,
+        edam:operation_3938 ;
+    sc:license "Not licensed" ;
+    sc:name "CPI-IGAE" ;
+    sc:url "https://github.com/wanxiaozhe/CPI-IGAE" .
+
 <https://bio.tools/cpla> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
@@ -151976,7 +145141,7 @@ With the recent outbreak of COVID-19, fast diagnostic testing has become one of
         "Dr. Zexian Liu" .
 
 <https://bio.tools/cplexa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0203,
@@ -152001,22 +145166,22 @@ With the recent outbreak of COVID-19, fast diagnostic testing has become one of
 
 <https://bio.tools/cpm> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0944" ;
-            sc:name "Peptide mass fingerprint" ;
-            sc:sameAs "http://edamontology.org/data_0944" ],
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Mass spectrometry data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ] ;
+            sc:additionalType "http://edamontology.org/data_0944" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Peptide mass fingerprint" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0944" ;
-            sc:name "Peptide mass fingerprint" ;
-            sc:sameAs "http://edamontology.org/data_0944" ],
+            sc:additionalType "http://edamontology.org/data_0944" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Peptide mass fingerprint" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Mass spectrometry data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_3071,
@@ -152033,22 +145198,18 @@ With the recent outbreak of COVID-19, fast diagnostic testing has become one of
 
 <https://bio.tools/cpmd> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1463" ;
-            sc:name "Small molecule structure" ;
-            sc:sameAs "http://edamontology.org/data_1463" ],
+            sc:additionalType "http://edamontology.org/data_0883" ;
+            sc:name "Structure" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0883" ;
-            sc:name "Structure" ;
-            sc:sameAs "http://edamontology.org/data_0883" ] ;
+            sc:additionalType "http://edamontology.org/data_1463" ;
+            sc:name "Small molecule structure" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1463" ;
-            sc:name "Small molecule structure" ;
-            sc:sameAs "http://edamontology.org/data_1463" ],
+            sc:additionalType "http://edamontology.org/data_0883" ;
+            sc:name "Structure" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0883" ;
-            sc:name "Structure" ;
-            sc:sameAs "http://edamontology.org/data_0883" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1463" ;
+            sc:name "Small molecule structure" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0176,
@@ -152069,14 +145230,12 @@ With the recent outbreak of COVID-19, fast diagnostic testing has become one of
 
 <https://bio.tools/cpmodule> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0850" ;
-            sc:name "Sequence set" ;
-            sc:sameAs "http://edamontology.org/data_0850" ] ;
+            sc:additionalType "http://edamontology.org/data_0850" ;
+            sc:name "Sequence set" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1353" ;
-            sc:name "Sequence motif" ;
-            sc:sameAs "http://edamontology.org/data_1353" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1353" ;
+            sc:name "Sequence motif" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0204 ;
     sc:citation <https://doi.org/10.1093/nar/gks237> ;
@@ -152090,7 +145249,7 @@ With the recent outbreak of COVID-19, fast diagnostic testing has become one of
     sc:url "http://bioinformatics.intec.ugent.be/kmarchal/Supplementary_Information_Sun_2011/Index.html" .
 
 <https://bio.tools/cpndb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0610,
@@ -152112,14 +145271,13 @@ With the recent outbreak of COVID-19, fast diagnostic testing has become one of
 
 <https://bio.tools/cppp> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1427" ;
-            sc:name "Phylogenetic discrete data" ;
-            sc:sameAs "http://edamontology.org/data_1427" ] ;
+            sc:additionalType "http://edamontology.org/data_1427" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Phylogenetic discrete data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0872" ;
-            sc:name "Phylogenetic tree" ;
-            sc:sameAs "http://edamontology.org/data_0872" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0872" ;
+            sc:name "Phylogenetic tree" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3293 ;
     sc:citation <https://doi.org/10.1186/1471-2164-15-S6-S10> ;
@@ -152138,22 +145296,22 @@ With the recent outbreak of COVID-19, fast diagnostic testing has become one of
 
 <https://bio.tools/cppredictor> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3495" ;
-            sc:name "RNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3495" ],
+            sc:additionalType "http://edamontology.org/data_0880" ;
+            sc:encodingFormat "http://edamontology.org/format_1457" ;
+            sc:name "RNA secondary structure" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0880" ;
-            sc:name "RNA secondary structure" ;
-            sc:sameAs "http://edamontology.org/data_0880" ] ;
+            sc:additionalType "http://edamontology.org/data_3495" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "RNA sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0951" ;
-            sc:name "Statistical estimate score" ;
-            sc:sameAs "http://edamontology.org/data_0951" ],
+            sc:additionalType "http://edamontology.org/data_0880" ;
+            sc:encodingFormat "http://edamontology.org/format_3604" ;
+            sc:name "RNA secondary structure" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0880" ;
-            sc:name "RNA secondary structure" ;
-            sc:sameAs "http://edamontology.org/data_0880" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0951" ;
+            sc:encodingFormat "http://edamontology.org/format_3464" ;
+            sc:name "Statistical estimate score" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0099 ;
@@ -152185,7 +145343,7 @@ With the recent outbreak of COVID-19, fast diagnostic testing has become one of
         "Josef Pánek" .
 
 <https://bio.tools/cppsite> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0082,
@@ -152201,8 +145359,24 @@ With the recent outbreak of COVID-19, fast diagnostic testing has become one of
     sc:softwareVersion "2.0" ;
     sc:url "https://webs.iiitd.edu.in/raghava/cppsite" .
 
+<https://bio.tools/cppsite1> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:citation <https://doi.org/10.1093/database/bas015>,
+        "pmcid:PMC3296953",
+        "pubmed:22403286" ;
+    sc:description "CPPsite is a database of experimentally validated Cell Penetrating Peptides (10-30 amino acids)." ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "CPPsite1" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/cppsite1/index.php> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/cppsite1/index.php" .
+
 <https://bio.tools/cpr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_2640,
@@ -152219,7 +145393,7 @@ With the recent outbreak of COVID-19, fast diagnostic testing has become one of
     biotools:primaryContact "Jaegyoon Ahn" .
 
 <https://bio.tools/cpred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -152240,8 +145414,26 @@ With the recent outbreak of COVID-19, fast diagnostic testing has become one of
     biotools:primaryContact "Jenn-Kang Hwang",
         "Wei-Cheng Lo" .
 
+<https://bio.tools/cpril> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_3047,
+        edam:topic_3068,
+        edam:topic_3172 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC539>,
+        "pubmed:35920772" ;
+    sc:description "CPRiL is a webserver for exploring functional compound-protein relationships that are extracted automatically from PubMed literature." ;
+    sc:isAccessibleForFree true ;
+    sc:license "Other" ;
+    sc:name "CPRiL" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://www.pharmbioinf.uni-freiburg.de/cpril" .
+
 <https://bio.tools/cpss> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_3168,
@@ -152260,7 +145452,7 @@ With the recent outbreak of COVID-19, fast diagnostic testing has become one of
         "Yuanwei Zhang" .
 
 <https://bio.tools/cpssm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0160,
@@ -152275,7 +145467,7 @@ With the recent outbreak of COVID-19, fast diagnostic testing has become one of
     sc:url "http://app.foroughmand.ir/cpssm/" .
 
 <https://bio.tools/cptac> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_2640,
@@ -152296,7 +145488,7 @@ With the recent outbreak of COVID-19, fast diagnostic testing has become one of
     sc:url "https://paynelab.github.io/cptac/" .
 
 <https://bio.tools/cptra> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3308,
@@ -152313,7 +145505,7 @@ With the recent outbreak of COVID-19, fast diagnostic testing has become one of
     sc:url "https://www.mybiosoftware.com/cptra-20090207-cross-platform-transcriptome-analysis.html" .
 
 <https://bio.tools/cpvsnp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0199,
@@ -152331,8 +145523,31 @@ With the recent outbreak of COVID-19, fast diagnostic testing has become one of
     sc:url "http://bioconductor.org/packages/release/bioc/html/cpvSNP.html" ;
     biotools:primaryContact "Caitlin McHugh" .
 
+<https://bio.tools/cpxdeepmsa> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Desktop application",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0084,
+        edam:topic_0128,
+        edam:topic_0623,
+        edam:topic_3957 ;
+    sc:citation <https://doi.org/10.3390/IJMS23158459>,
+        "pmcid:PMC9369210",
+        "pubmed:35955594" ;
+    sc:description "cpxDeepMSA is a deep cascade algorithm to generate high-quality protein complex multiple sequence alignment with high quality, significant depth, a wide range of sequence sources, and strong generalization ability." ;
+    sc:featureList edam:operation_0272,
+        edam:operation_0492,
+        edam:operation_2492 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "cpxDeepMSA" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://zhanggroup.org/cpxDeepMSA/" .
+
 <https://bio.tools/cqn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3170 ;
@@ -152353,7 +145568,7 @@ With the recent outbreak of COVID-19, fast diagnostic testing has become one of
     biotools:primaryContact <http://orcid.org/0000-0003-0086-0687> .
 
 <https://bio.tools/cqnr-epp3d> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0166 ;
     sc:citation <https://doi.org/10.1016/J.COMPBIOMED.2019.103374>,
@@ -152365,7 +145580,7 @@ Effector protein predictor based on 3D structure (EPP3D) is based on the CQNR an
     sc:url "http://projectphd.droppages.com/CQNR.html" .
 
 <https://bio.tools/cr-est> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0780 ;
@@ -152384,8 +145599,26 @@ Effector protein predictor based on 3D structure (EPP3D) is based on the CQNR an
     sc:softwareHelp <http://apex.ipk-gatersleben.de/apex/f?p=CREST:21:16614540896573::NO:::> ;
     sc:url "http://apex.ipk-gatersleben.de/apex/f?p=CREST" .
 
+<https://bio.tools/crabnet> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0605,
+        edam:topic_3314,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.26434/CHEMRXIV.11869026.V3> ;
+    sc:description "Compositionally-Restricted Attention-Based Network for Materials Property Prediction." ;
+    sc:featureList edam:operation_3659,
+        edam:operation_3927 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "CrabNet" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://github.com/anthony-wang/CrabNet" .
+
 <https://bio.tools/crac> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0114,
         edam:topic_3170,
@@ -152410,7 +145643,7 @@ Effector protein predictor based on 3D structure (EPP3D) is based on the CQNR an
         "For questions, comments, remarks on the algorithm or the article" .
 
 <https://bio.tools/cractools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0769,
@@ -152426,7 +145659,7 @@ Effector protein predictor based on 3D structure (EPP3D) is based on the CQNR an
     sc:url "http://cractools.gforge.inria.fr/" .
 
 <https://bio.tools/craft-genome> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0621,
@@ -152446,7 +145679,7 @@ Effector protein predictor based on 3D structure (EPP3D) is based on the CQNR an
     sc:url "https://github.com/jiaxingbai/CRAFT" .
 
 <https://bio.tools/craig> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0114,
         edam:topic_0654,
@@ -152460,7 +145693,7 @@ Effector protein predictor based on 3D structure (EPP3D) is based on the CQNR an
     sc:url "http://www.seas.upenn.edu/~strctlrn/craig.html" .
 
 <https://bio.tools/craig-plot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0209,
         edam:topic_2258,
@@ -152478,7 +145711,7 @@ Effector protein predictor based on 3D structure (EPP3D) is based on the CQNR an
     sc:url "https://peter-ertl.com/molecular/substituents/craigplot.html" .
 
 <https://bio.tools/crambled> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Web application" ;
     sc:applicationSubCategory edam:topic_2229,
@@ -152496,7 +145729,7 @@ Effector protein predictor based on 3D structure (EPP3D) is based on the CQNR an
     biotools:primaryContact <http://orcid.org/0000-0002-7876-7338> .
 
 <https://bio.tools/cramer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0621,
@@ -152514,7 +145747,7 @@ Effector protein predictor based on 3D structure (EPP3D) is based on the CQNR an
     sc:url "https://github.com/FadyMohareb/cramer" .
 
 <https://bio.tools/cramtools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3365 ;
     sc:description "Framework technology comprising file format and toolkit in which highly efficient and tunable reference-based compression of sequence data with a data format that is directly available for computational use are combined." ;
@@ -152526,7 +145759,7 @@ Effector protein predictor based on 3D structure (EPP3D) is based on the CQNR an
     sc:url "http://www.ebi.ac.uk/ena/software/cram-toolkit" .
 
 <https://bio.tools/crasp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0130,
@@ -152547,7 +145780,7 @@ Effector protein predictor based on 3D structure (EPP3D) is based on the CQNR an
     biotools:primaryContact "Dmitry A. Afonnikov" .
 
 <https://bio.tools/cravat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0622,
@@ -152565,7 +145798,7 @@ Effector protein predictor based on 3D structure (EPP3D) is based on the CQNR an
     biotools:primaryContact "Contact Form" .
 
 <https://bio.tools/crazyquant> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3512 ;
     sc:description "CrazyQuant is a spot-finding tool. This JAVA-based applet allows the loading and quantitation of your cDNA microarray images and membranes." ;
@@ -152578,8 +145811,32 @@ Effector protein predictor based on 3D structure (EPP3D) is based on the CQNR an
     sc:softwareHelp <http://www-bioeng.ucsd.edu/faculty/area/ideker_lab/scripts/crazy.tar.gz> ;
     sc:url "http://healthsciences.ucsd.edu/som/medicine/research/labs/ideker/software/Pages/Crazy-Quant.aspx" .
 
+<https://bio.tools/crbpdl> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0659,
+        edam:topic_0749,
+        edam:topic_3320,
+        edam:topic_3474,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.1371/JOURNAL.PCBI.1009798>,
+        "pmcid:PMC8806072",
+        "pubmed:35051187" ;
+    sc:description "Identification of circRNA-RBP interaction sites using an ensemble neural network approach." ;
+    sc:featureList edam:operation_0267,
+        edam:operation_3216,
+        edam:operation_3901,
+        edam:operation_3902 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "CRBPDL" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/nmt315320/CRBPDL.git" .
+
 <https://bio.tools/crc64> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:description "CRC64 is the source code for an improved CRC-64 routine for hashing protein sequences. This CRC function has been extensively tested on real sequences and articially generated sequences." ;
@@ -152593,7 +145850,7 @@ Effector protein predictor based on 3D structure (EPP3D) is based on the CQNR an
     sc:url "http://bioinfadmin.cs.ucl.ac.uk/downloads/crc64/" .
 
 <https://bio.tools/crcview> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3518 ;
@@ -152610,7 +145867,7 @@ Effector protein predictor based on 3D structure (EPP3D) is based on the CQNR an
     sc:url "http://crcview.hegroup.org/" .
 
 <https://bio.tools/create_specimen_data_object> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "Creates a FAIR digital object in the openDS format" ;
     sc:featureList edam:operation_1812 ;
     sc:license "Apache-2.0" ;
@@ -152620,62 +145877,62 @@ Effector protein predictor based on 3D structure (EPP3D) is based on the CQNR an
 
 <https://bio.tools/createcontrolsubset> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ],
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Sequence trace" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ],
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
+            sc:name "Sequence trace" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
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         [ a bsct:FormalParameter ;
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-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ],
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Sequence trace" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
+            sc:name "Sequence trace" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ],
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
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         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
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         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ],
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Sequence trace" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Sequence trace" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ],
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
+            sc:name "Sequence trace" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ],
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
+            sc:name "Sequence trace" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
+            sc:name "Sequence trace" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3168,
         edam:topic_3169 ;
@@ -152692,7 +145949,7 @@ Effector protein predictor based on 3D structure (EPP3D) is based on the CQNR an
     biotools:primaryContact "Galaxy Support Team" .
 
 <https://bio.tools/created-metal-artifact-computed-tomography> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -152709,7 +145966,7 @@ Effector protein predictor based on 3D structure (EPP3D) is based on the CQNR an
     biotools:primaryContact "Titipong Kaewlek" .
 
 <https://bio.tools/creme> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0204,
@@ -152728,7 +145985,7 @@ Effector protein predictor based on 3D structure (EPP3D) is based on the CQNR an
     biotools:primaryContact "CREME Support" .
 
 <https://bio.tools/crescent> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -152747,8 +146004,23 @@ Effector protein predictor based on 3D structure (EPP3D) is based on the CQNR an
     sc:name "CReSCENT" ;
     sc:url "https://crescent.cloud" .
 
+<https://bio.tools/crgnet> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_3382,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1109/TIP.2022.3189825>,
+        "pubmed:35877807" ;
+    sc:description "Consistency-regularized region-growing network (CRGNet) for semantic segmentation of VHR remote sensing images using point-level annotations. The key idea of CRGNet is to iteratively select unlabeled pixels with high confidence to expand the annotated area from the original sparse points" ;
+    sc:featureList edam:operation_3443,
+        edam:operation_3553 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "CRGNet" ;
+    sc:url "https://github.com/YonghaoXu/CRGNet" .
+
 <https://bio.tools/crhp-finder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0625,
@@ -152764,7 +146036,7 @@ Effector protein predictor based on 3D structure (EPP3D) is based on the CQNR an
     sc:url "https://cge.cbs.dtu.dk/services/CRHP-Finder/" .
 
 <https://bio.tools/cri-iatlas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Bioinformatics portal" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_0804,
@@ -152782,7 +146054,7 @@ Effector protein predictor based on 3D structure (EPP3D) is based on the CQNR an
     sc:url "https://www.cri-iatlas.org" .
 
 <https://bio.tools/cri-map> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102 ;
     sc:description "Used for genetic linkage analysis of diploid species. This version has been upgraded to handle large pedigrees with large numbers of markers on modern hardware." ;
@@ -152798,7 +146070,7 @@ Effector protein predictor based on 3D structure (EPP3D) is based on the CQNR an
     sc:url "http://www.animalgenome.org/tools/share/crimap/" .
 
 <https://bio.tools/crimage> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2229,
@@ -152819,7 +146091,7 @@ Effector protein predictor based on 3D structure (EPP3D) is based on the CQNR an
         "Yinyin Yuan" .
 
 <https://bio.tools/crimson> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Library" ;
     sc:applicationSubCategory edam:topic_0769,
@@ -152837,7 +146109,7 @@ Effector protein predictor based on 3D structure (EPP3D) is based on the CQNR an
     sc:url "http://www.crimson.software" .
 
 <https://bio.tools/crinet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0204,
@@ -152854,8 +146126,44 @@ Effector protein predictor based on 3D structure (EPP3D) is based on the CQNR an
     sc:name "Crinet" ;
     sc:url "https://github.com/bozdaglab/crinet" .
 
+<https://bio.tools/crip> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:description "Computational Resources for predicting protein-macromolecular interactions" ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "CRIP" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/crip/index.html> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/crip/index.html" .
+
+<https://bio.tools/cris> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0196,
+        edam:topic_0199,
+        edam:topic_0203,
+        edam:topic_2830,
+        edam:topic_3170 ;
+    sc:citation <https://doi.org/10.1093/BIOADV/VBAB021>,
+        "pmcid:PMC8600631",
+        "pubmed:34806017" ;
+    sc:description "Complete Reconstruction of Immunoglobulin V-D-J Sequences from RNA-seq" ;
+    sc:featureList edam:operation_0310,
+        edam:operation_3198,
+        edam:operation_3802 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "CRIS" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/Rashedul/CRIS" .
+
 <https://bio.tools/crisp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_3053,
@@ -152869,7 +146177,7 @@ Effector protein predictor based on 3D structure (EPP3D) is based on the CQNR an
     biotools:primaryContact "Vikas Bansal" .
 
 <https://bio.tools/crisp-cystine> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0154,
@@ -152886,7 +146194,7 @@ Effector protein predictor based on 3D structure (EPP3D) is based on the CQNR an
     sc:url "http://wulab.com.cn/CRISP" .
 
 <https://bio.tools/crisp-view> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0625,
@@ -152903,7 +146211,7 @@ Effector protein predictor based on 3D structure (EPP3D) is based on the CQNR an
     sc:url "http://crispview.weililab.org" .
 
 <https://bio.tools/crispRdesignR> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_2885,
@@ -152929,8 +146237,31 @@ The DAK1.fasta and DAK1_short.txt file contains a DNA sequence native to the DAK
     sc:name "crispRdesignR" ;
     sc:url "https://github.com/dylanbeeber/crispRdesignR" .
 
+<https://bio.tools/crisp_metabolomics> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Desktop application" ;
+    sc:applicationSubCategory edam:topic_3172,
+        edam:topic_3382,
+        edam:topic_3422,
+        edam:topic_3474,
+        edam:topic_3520 ;
+    sc:citation <https://doi.org/10.1093/BIB/BBAB550>,
+        "pmcid:PMC8921635",
+        "pubmed:35022651" ;
+    sc:description "CRISP: a deep learning architecture for GC × GC–TOFMS contour ROI identification, simulation and analysis in imaging metabolomics" ;
+    sc:featureList edam:operation_3436,
+        edam:operation_3443,
+        edam:operation_3891 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "CRISP" ;
+    sc:operatingSystem "Linux",
+        "Windows" ;
+    sc:url "https://github.com/vivekmathema/GCxGC-CRISP" .
+
 <https://bio.tools/crispam> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_2885,
@@ -152945,14 +146276,14 @@ The DAK1.fasta and DAK1_short.txt file contains a DNA sequence native to the DAK
 
 <https://bio.tools/crispi> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Sequence alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0160 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btp586> ;
@@ -152969,7 +146300,7 @@ The DAK1.fasta and DAK1_short.txt file contains a DNA sequence native to the DAK
     biotools:primaryContact "GenOuest platform" .
 
 <https://bio.tools/crispor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0622,
@@ -152987,7 +146318,7 @@ The DAK1.fasta and DAK1_short.txt file contains a DNA sequence native to the DAK
     biotools:primaryContact "Support" .
 
 <https://bio.tools/crispr-cbei> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0203,
@@ -153006,7 +146337,7 @@ The DAK1.fasta and DAK1_short.txt file contains a DNA sequence native to the DAK
     sc:url "https://taolab.nwafu.edu.cn/crisprcbei/" .
 
 <https://bio.tools/crispr-focus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3053,
@@ -153023,7 +146354,7 @@ The DAK1.fasta and DAK1_short.txt file contains a DNA sequence native to the DAK
     biotools:primaryContact "X. Shirley Liu" .
 
 <https://bio.tools/crispr-ge> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0622 ;
     sc:citation <https://doi.org/10.1016/j.molp.2017.06.004>,
@@ -153038,8 +146369,31 @@ The DAK1.fasta and DAK1_short.txt file contains a DNA sequence native to the DAK
     sc:softwareHelp <http://skl.scau.edu.cn/help/> ;
     sc:url "http://skl.scau.edu.cn/home/" .
 
+<https://bio.tools/crispr-surfaceome> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0166,
+        edam:topic_2229,
+        edam:topic_3173,
+        edam:topic_3912 ;
+    sc:citation <https://doi.org/10.1016/J.CSBJ.2022.07.026>,
+        "pmcid:PMC9307495",
+        "pubmed:35891797" ;
+    sc:description "An online tool for designing highly efficient sgRNAs targeting cell surface proteins" ;
+    sc:featureList edam:operation_0314,
+        edam:operation_3096,
+        edam:operation_3767 ;
+    sc:name "CRISPR-Surfaceome" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://crispr-surfaceome.siais.shanghaitech.edu.cn/aboutus> ;
+    sc:url "https://crispr-surfaceome.siais.shanghaitech.edu.cn/home" .
+
 <https://bio.tools/crispr-tape> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -153059,13 +146413,8 @@ Hello, welcome to CRISPR-TAPE, a protein-centric gRNA design tool.""" ;
     sc:name "CRISPR-TAPE" ;
     sc:url "http://www.laboratorychild.com/crispr-tape" .
 
-<https://bio.tools/crispr_sequencing> a sc:SoftwareApplication ;
-    sc:description "CD Genomics provides CRISPR-Cas9 knockout validation and potential off-target detection in a high-throughput and cost-effective manner by harnessing advanced next generation sequencing (NGS). Our team members have experience in both genome editing and NGS, enabling extensive support to your research. CD Genomics is able to help you to detect the potential off-target effects via targets enrichment and deep sequencing at fairly inexpensive prices." ;
-    sc:name "CRISPR Sequencing" ;
-    sc:url "https://www.cd-genomics.com/crispr-mutation-sequencing.html" .
-
 <https://bio.tools/crisprbuilder-tb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_2885,
@@ -153087,10 +146436,10 @@ Hello, welcome to CRISPR-TAPE, a protein-centric gRNA design tool.""" ;
 
 <https://bio.tools/crisprcasidentifier> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_2200" ;
+            sc:name "Protein sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_3474 ;
@@ -153109,8 +146458,26 @@ Hello, welcome to CRISPR-TAPE, a protein-centric gRNA design tool.""" ;
     sc:url "https://github.com/BackofenLab/CRISPRcasIdentifier" ;
     biotools:primaryContact <https://orcid.org/0000-0002-8060-0350> .
 
+<https://bio.tools/crisprcasstack> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Suite" ;
+    sc:applicationSubCategory edam:topic_0080,
+        edam:topic_0114,
+        edam:topic_0121,
+        edam:topic_3174,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1093/BIB/BBAC335>,
+        "pubmed:35998924" ;
+    sc:description "CRISPRCasStack is a toolkit capable of accurately identifying Cas proteins and comprehensively predicting CRISPR-Cas-related components, with the goal of accurately identifying potential Cas proteins that cannot currently be identified based on homology through a machine learning-based approach." ;
+    sc:featureList edam:operation_3096,
+        edam:operation_3767 ;
+    sc:license "Not licensed" ;
+    sc:name "CRISPRCasStack" ;
+    sc:operatingSystem "Linux" ;
+    sc:url "https://github.com/yrjia1015/CRISPRCasStack" .
+
 <https://bio.tools/crisprcastyper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0114,
@@ -153128,7 +146495,7 @@ Hello, welcome to CRISPR-TAPE, a protein-centric gRNA design tool.""" ;
     sc:url "http://cctyper.crispr.dk" .
 
 <https://bio.tools/crisprcompar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0157,
         edam:topic_0199,
@@ -153145,7 +146512,7 @@ Hello, welcome to CRISPR-TAPE, a protein-centric gRNA design tool.""" ;
     sc:url "http://crispr.u-psud.fr/CRISPRcompar/" .
 
 <https://bio.tools/crisprfinder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0157,
@@ -153169,7 +146536,7 @@ Hello, welcome to CRISPR-TAPE, a protein-centric gRNA design tool.""" ;
     biotools:primaryContact "Marie Touchon" .
 
 <https://bio.tools/crispridentify> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0160,
@@ -153186,7 +146553,7 @@ Hello, welcome to CRISPR-TAPE, a protein-centric gRNA design tool.""" ;
     sc:url "https://github.com/BackofenLab/CRISPRidentify" .
 
 <https://bio.tools/crisprland> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0199,
@@ -153199,7 +146566,7 @@ Hello, welcome to CRISPR-TAPE, a protein-centric gRNA design tool.""" ;
     sc:url "https://github.com/UCBASiCS/CRISPRLand" .
 
 <https://bio.tools/crisprloci> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0160,
@@ -153221,18 +146588,18 @@ Hello, welcome to CRISPR-TAPE, a protein-centric gRNA design tool.""" ;
 
 <https://bio.tools/crisprmap> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3495" ;
-            sc:name "RNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3495" ] ;
+            sc:additionalType "http://edamontology.org/data_3495" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "RNA sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0872" ;
-            sc:name "Phylogenetic tree" ;
-            sc:sameAs "http://edamontology.org/data_0872" ],
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Image" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0872" ;
+            sc:encodingFormat "http://edamontology.org/format_1910" ;
+            sc:name "Phylogenetic tree" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0099 ;
@@ -153257,8 +146624,33 @@ Hello, welcome to CRISPR-TAPE, a protein-centric gRNA design tool.""" ;
     biotools:primaryContact <http://orcid.org/0000-0001-8231-3323>,
         "Sita Saunders" .
 
+<https://bio.tools/crisprnano> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0625,
+        edam:topic_0769,
+        edam:topic_2229,
+        edam:topic_3168,
+        edam:topic_3912 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAC440>,
+        "pmcid:PMC9252781",
+        "pubmed:35640601" ;
+    sc:description "CRISPRnano is a javascript-based program that was developed for rapid deep sequencing based genotyping of nuclease edited cell clones." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3096,
+        edam:operation_3196,
+        edam:operation_3227,
+        edam:operation_3799 ;
+    sc:license "GPL-2.0" ;
+    sc:name "CRISPRnano" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://www.crisprnano.de/> ;
+    sc:url "http://www.CRISPRnano.de" .
+
 <https://bio.tools/crispron> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0798,
@@ -153278,7 +146670,7 @@ Hello, welcome to CRISPR-TAPE, a protein-centric gRNA design tool.""" ;
     sc:url "https://rth.dk/resources/crispr/" .
 
 <https://bio.tools/crisprpred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0099,
@@ -153295,7 +146687,7 @@ Hello, welcome to CRISPR-TAPE, a protein-centric gRNA design tool.""" ;
         "Md. Khaledur Rahman" .
 
 <https://bio.tools/crisprpredseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3474,
@@ -153309,8 +146701,32 @@ Hello, welcome to CRISPR-TAPE, a protein-centric gRNA design tool.""" ;
     sc:name "CRISPRpred(SEQ)" ;
     sc:url "https://github.com/Rafid013/CRISPRpredSEQ" .
 
+<https://bio.tools/crisprroots> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workflow" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_3170,
+        edam:topic_3308,
+        edam:topic_3512,
+        edam:topic_3912 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAB1131>,
+        "pmcid:PMC8887420",
+        "pubmed:34850137" ;
+    sc:description "CRISPRroots: CRISPR–Cas9-mediated edits with accompanying RNA-seq data assessed for on-target and off-target sites." ;
+    sc:featureList edam:operation_3096,
+        edam:operation_3196,
+        edam:operation_3223,
+        edam:operation_3227 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "CRISPRroots" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://rth.dk/resources/crispr" .
+
 <https://bio.tools/crisprseek> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0099,
@@ -153332,7 +146748,7 @@ Hello, welcome to CRISPR-TAPE, a protein-centric gRNA design tool.""" ;
     biotools:primaryContact "Lihua Julie Zhu" .
 
 <https://bio.tools/crisprseekplus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -153351,7 +146767,7 @@ Hello, welcome to CRISPR-TAPE, a protein-centric gRNA design tool.""" ;
     biotools:primaryContact "Alper Kucukural" .
 
 <https://bio.tools/crisprsql> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_2830,
         edam:topic_3170,
@@ -153367,7 +146783,7 @@ Hello, welcome to CRISPR-TAPE, a protein-centric gRNA design tool.""" ;
     sc:url "http://www.crisprsql.com" .
 
 <https://bio.tools/crisprvariants> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0199,
@@ -153387,8 +146803,28 @@ Hello, welcome to CRISPR-TAPE, a protein-centric gRNA design tool.""" ;
     sc:url "http://bioconductor.org/packages/release/bioc/html/CrispRVariants.html" ;
     biotools:primaryContact "Helen Lindsay" .
 
+<https://bio.tools/crisprvi> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0080,
+        edam:topic_2269,
+        edam:topic_3168 ;
+    sc:citation <https://doi.org/10.1186/S12859-022-04716-9>,
+        "pmcid:PMC9128103",
+        "pubmed:35610585" ;
+    sc:description "A Python package for visualizing and analyzing CRISPR sequences." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_0491,
+        edam:operation_1812 ;
+    sc:license "GPL-3.0" ;
+    sc:name "CrisprVi" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://sourceforge.net/projects/crisprvi" .
+
 <https://bio.tools/crispulator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0085,
         edam:topic_3524 ;
@@ -153404,7 +146840,7 @@ Hello, welcome to CRISPR-TAPE, a protein-centric gRNA design tool.""" ;
     biotools:primaryContact "Martin Kampmann" .
 
 <https://bio.tools/crispy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0202,
@@ -153419,7 +146855,7 @@ Hello, welcome to CRISPR-TAPE, a protein-centric gRNA design tool.""" ;
     sc:url "https://crispy.secondarymetabolites.org" .
 
 <https://bio.tools/crispy-pop> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0621,
@@ -153435,7 +146871,7 @@ Hello, welcome to CRISPR-TAPE, a protein-centric gRNA design tool.""" ;
     sc:url "https://crispy-pop.glbrc.org/" .
 
 <https://bio.tools/crisscrosslinker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0154,
@@ -153451,8 +146887,33 @@ Hello, welcome to CRISPR-TAPE, a protein-centric gRNA design tool.""" ;
     sc:name "crisscrosslinkeR" ;
     sc:url "https://egmg726.github.io/crisscrosslinker/" .
 
+<https://bio.tools/critterbase> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Desktop application",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0621,
+        edam:topic_3050,
+        edam:topic_3068,
+        edam:topic_3366,
+        edam:topic_3810 ;
+    sc:citation <https://doi.org/10.1038/S41597-022-01590-1>,
+        "pmcid:PMC9357058",
+        "pubmed:35933490" ;
+    sc:description "CRITTERBASE, a publicly accessible data warehouse and interactive portal that currently hosts quality-controlled and taxonomically standardized presence/absence, abundance, and biomass data for 18,644 samples and 3,664 benthic taxa (2,824 of which at species level)." ;
+    sc:featureList edam:operation_2422,
+        edam:operation_2428,
+        edam:operation_3435 ;
+    sc:isAccessibleForFree true ;
+    sc:license "BSD-3-Clause" ;
+    sc:name "CRITTERBASE" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://critterbase.awi.de" .
+
 <https://bio.tools/crlmm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0625,
@@ -153475,7 +146936,7 @@ Hello, welcome to CRISPR-TAPE, a protein-centric gRNA design tool.""" ;
         "Robert Scharpf" .
 
 <https://bio.tools/crmarker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0659,
@@ -153495,7 +146956,7 @@ Hello, welcome to CRISPR-TAPE, a protein-centric gRNA design tool.""" ;
     biotools:primaryContact "Weidong Tian" .
 
 <https://bio.tools/crmb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0209,
         edam:topic_3373,
@@ -153515,7 +146976,7 @@ Hello, welcome to CRISPR-TAPE, a protein-centric gRNA design tool.""" ;
     biotools:primaryContact "Nolan A. Wages" .
 
 <https://bio.tools/crnpred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2814 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/bti330>,
@@ -153531,7 +146992,7 @@ Hello, welcome to CRISPR-TAPE, a protein-centric gRNA design tool.""" ;
     sc:url "http://www.bioinformatics.org/crnpred/wiki/" .
 
 <https://bio.tools/crnt4sbml> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0821,
@@ -153548,7 +147009,7 @@ Hello, welcome to CRISPR-TAPE, a protein-centric gRNA design tool.""" ;
     sc:url "https://github.com/PNNL-Comp-Mass-Spec/CRNT4SBML" .
 
 <https://bio.tools/croco> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0622,
@@ -153567,7 +147028,7 @@ Hello, welcome to CRISPR-TAPE, a protein-centric gRNA design tool.""" ;
         "Paul Simion" .
 
 <https://bio.tools/croco-xlink> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Library" ;
     sc:applicationSubCategory edam:topic_0154,
@@ -153584,7 +147045,7 @@ Hello, welcome to CRISPR-TAPE, a protein-centric gRNA design tool.""" ;
     sc:url "https://cschmidtlab.github.io/CroCo" .
 
 <https://bio.tools/crocs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3169,
@@ -153606,22 +147067,22 @@ Hello, welcome to CRISPR-TAPE, a protein-centric gRNA design tool.""" ;
 
 <https://bio.tools/crop> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0637,
         edam:topic_3168,
@@ -153641,7 +147102,7 @@ Hello, welcome to CRISPR-TAPE, a protein-centric gRNA design tool.""" ;
     biotools:primaryContact "Galaxy Support Team" .
 
 <https://bio.tools/crop-correlation> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_3172,
@@ -153656,7 +147117,7 @@ Hello, welcome to CRISPR-TAPE, a protein-centric gRNA design tool.""" ;
     sc:url "http://www.github.com/rendju/CROP" .
 
 <https://bio.tools/crop-crispr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3512 ;
@@ -153672,7 +147133,7 @@ Hello, welcome to CRISPR-TAPE, a protein-centric gRNA design tool.""" ;
     sc:url "https://github.com/vaprilyanto/crop" .
 
 <https://bio.tools/crop-network> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0602 ;
     sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTZ688>,
@@ -153685,7 +147146,7 @@ Hello, welcome to CRISPR-TAPE, a protein-centric gRNA design tool.""" ;
     sc:url "https://cdv.dei.uc.pt/crop/" .
 
 <https://bio.tools/cropcsm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3047,
@@ -153697,7 +147158,7 @@ Hello, welcome to CRISPR-TAPE, a protein-centric gRNA design tool.""" ;
     sc:url "http://biosig.unimelb.edu.au/crop_csm" .
 
 <https://bio.tools/croppal> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0780 ;
@@ -153721,16 +147182,33 @@ Hello, welcome to CRISPR-TAPE, a protein-centric gRNA design tool.""" ;
     sc:url "http://crop-pal.org/" ;
     biotools:primaryContact "Australia" .
 
+<https://bio.tools/croppol> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0621,
+        edam:topic_3050,
+        edam:topic_3810 ;
+    sc:citation <https://doi.org/10.1002/ECY.3614>,
+        "pubmed:34921678" ;
+    sc:description "A dynamic, open and global database on crop pollination" ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "CropPol" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://www.beeproject.science/croppollination.html" .
+
 <https://bio.tools/cross-id> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2526" ;
-            sc:name "Text data" ;
-            sc:sameAs "http://edamontology.org/data_2526" ] ;
+            sc:additionalType "http://edamontology.org/data_2526" ;
+            sc:name "Text data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0905" ;
-            sc:name "Protein interaction raw data" ;
-            sc:sameAs "http://edamontology.org/data_0905" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0905" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Protein interaction raw data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_2814 ;
     sc:citation <https://doi.org/10.1021/acs.jproteome.8b00725>,
@@ -153743,7 +147221,7 @@ Hello, welcome to CRISPR-TAPE, a protein-centric gRNA design tool.""" ;
     sc:url "https://www.hecklab.com/software/xlinkx/" .
 
 <https://bio.tools/cross_checker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_3382 ;
@@ -153757,7 +147235,7 @@ Hello, welcome to CRISPR-TAPE, a protein-centric gRNA design tool.""" ;
     biotools:primaryContact "Support" .
 
 <https://bio.tools/crossbar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0602,
@@ -153774,7 +147252,7 @@ Hello, welcome to CRISPR-TAPE, a protein-centric gRNA design tool.""" ;
     sc:url "https://crossbar.kansil.org" .
 
 <https://bio.tools/crossbow> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0199,
@@ -153792,7 +147270,7 @@ Hello, welcome to CRISPR-TAPE, a protein-centric gRNA design tool.""" ;
     biotools:primaryContact "Ben Langmead" .
 
 <https://bio.tools/crosscheck> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0219,
@@ -153809,7 +147287,7 @@ Hello, welcome to CRISPR-TAPE, a protein-centric gRNA design tool.""" ;
     biotools:primaryContact "Support" .
 
 <https://bio.tools/crosshub> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0622,
@@ -153828,7 +147306,7 @@ Hello, welcome to CRISPR-TAPE, a protein-centric gRNA design tool.""" ;
     biotools:primaryContact "Dmitriev AA" .
 
 <https://bio.tools/crossicc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0203,
@@ -153846,7 +147324,7 @@ Hello, welcome to CRISPR-TAPE, a protein-centric gRNA design tool.""" ;
     sc:url "https://github.com/bioinformatist/CrossICC" .
 
 <https://bio.tools/crosslink> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0602,
@@ -153866,7 +147344,7 @@ Hello, welcome to CRISPR-TAPE, a protein-centric gRNA design tool.""" ;
     biotools:primaryContact "Tobias Dezulian" .
 
 <https://bio.tools/crosslink_nodes> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0602,
@@ -153889,7 +147367,7 @@ Hello, welcome to CRISPR-TAPE, a protein-centric gRNA design tool.""" ;
     sc:url "https://zzwch.github.io/crosslink/" .
 
 <https://bio.tools/crosslinkwgcna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_3307 ;
@@ -153903,7 +147381,7 @@ Hello, welcome to CRISPR-TAPE, a protein-centric gRNA design tool.""" ;
     sc:url "https://github.com/LUMC-BioSemantics/crosslinkWGCNA" .
 
 <https://bio.tools/crossmap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btt730> ;
     sc:description "An efficient tool for converting genome coordinates between assemblies. CrossMap supports most of the commonly used file formats, including BAM, sequence alignment map, Wiggle, BigWig, browser extensible data, general feature format, gene transfer format and variant call format." ;
     sc:featureList edam:operation_3267 ;
@@ -153911,7 +147389,7 @@ Hello, welcome to CRISPR-TAPE, a protein-centric gRNA design tool.""" ;
     sc:url "http://crossmap.sourceforge.net/" .
 
 <https://bio.tools/crossmeta> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3518 ;
@@ -153929,7 +147407,7 @@ Hello, welcome to CRISPR-TAPE, a protein-centric gRNA design tool.""" ;
     biotools:primaryContact "Alex Pickering" .
 
 <https://bio.tools/crossrun> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269 ;
     sc:citation <https://doi.org/10.1371/JOURNAL.PONE.0223233>,
@@ -153945,26 +147423,26 @@ The R package crossrun computes the joint distribution of the number of crossing
 
 <https://bio.tools/crosstalkdb> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ] ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Expression data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ],
+            sc:additionalType "http://edamontology.org/data_0906" ;
+            sc:encodingFormat "http://edamontology.org/format_3620" ;
+            sc:name "Protein interaction data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2969" ;
-            sc:name "Sequence image" ;
-            sc:sameAs "http://edamontology.org/data_2969" ],
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_3620" ;
+            sc:name "Expression data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0906" ;
-            sc:name "Protein interaction data" ;
-            sc:sameAs "http://edamontology.org/data_0906" ],
+            sc:additionalType "http://edamontology.org/data_0906" ;
+            sc:encodingFormat "http://edamontology.org/format_3604" ;
+            sc:name "Protein interaction data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0906" ;
-            sc:name "Protein interaction data" ;
-            sc:sameAs "http://edamontology.org/data_0906" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2969" ;
+            sc:encodingFormat "http://edamontology.org/format_3604" ;
+            sc:name "Sequence image" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web API",
         "Web application" ;
@@ -153991,7 +147469,7 @@ The R package crossrun computes the joint distribution of the number of crossing
         "Veit Schwämmle" .
 
 <https://bio.tools/crosstalker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0602,
@@ -154009,7 +147487,7 @@ The R package crossrun computes the joint distribution of the number of crossing
     sc:url "https://github.com/CostaLab/CrossTalkeR" .
 
 <https://bio.tools/crosswork> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121 ;
     sc:citation <https://doi.org/10.1016/j.jprot.2011.04.019> ;
@@ -154020,7 +147498,7 @@ The R package crossrun computes the joint distribution of the number of crossing
     biotools:primaryContact "Morten Rasmussen" .
 
 <https://bio.tools/croton> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_2885,
         edam:topic_3303,
@@ -154042,7 +147520,7 @@ The R package crossrun computes the joint distribution of the number of crossing
     sc:url "https://github.com/vli31/CROTON" .
 
 <https://bio.tools/crp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_3510,
@@ -154058,18 +147536,52 @@ The R package crossrun computes the joint distribution of the number of crossing
     sc:url "http://fasta.bioch.virginia.edu/crp/" ;
     biotools:primaryContact "CRP Support" .
 
-<https://bio.tools/crrmh> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3305,
-        edam:topic_3376,
-        edam:topic_3419 ;
-    sc:citation <https://doi.org/10.1111/AJR.12560>,
-        "pubmed:31515882" ;
-    sc:description "> LOW CONFIDENCE! | > COMMON LINK WITH (PUB. & NAME DIFFERENT) bio.tools/Ribopeaks (COM.), bio.tools/NeOGen (COM.AU), bio.tools/chromas (COM.AU) | > CORRECT NAME OF TOOL COULD ALSO BE 'rural', 'mental', 'declaration' | The Orange Declaration on rural and remote mental health | Centre for Rural and Remote Mental Health | Providing leadership in rural and remote mental health research, working closely with rural communities and our valued partners" ;
-    sc:name "crrmh" ;
-    sc:url "https://www.crrmh.com.au/" .
+<https://bio.tools/crpgcn> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0634,
+        edam:topic_3360,
+        edam:topic_3361,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1186/S12859-021-04467-Z>,
+        "pmcid:PMC8588735",
+        "pubmed:34772332" ;
+    sc:description "Predicting circRNA-disease associations using graph convolutional network based on heterogeneous network." ;
+    sc:featureList edam:operation_3891,
+        edam:operation_3935,
+        edam:operation_3960 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Apache-2.0" ;
+    sc:name "CRPGCN" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/KajiMaCN/CRPGCN/" .
+
+<https://bio.tools/crpmkb> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Bioinformatics portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0602,
+        edam:topic_2640,
+        edam:topic_3400,
+        edam:topic_3407,
+        edam:topic_3577 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAB850>,
+        "pubmed:34927675" ;
+    sc:description "Knowledge base of cancer risk prediction models for systematic comparison and personalized applications." ;
+    sc:featureList edam:operation_3659,
+        edam:operation_3927,
+        edam:operation_3928 ;
+    sc:isAccessibleForFree true ;
+    sc:name "CRPMKB" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://www.sysbio.org.cn/CRPMKB/" .
 
 <https://bio.tools/crrnn2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0123,
         edam:topic_0166,
@@ -154085,7 +147597,7 @@ The R package crossrun computes the joint distribution of the number of crossing
     sc:url "http://qianglab.scst.suda.edu.cn/crrnn2/" .
 
 <https://bio.tools/crsd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0204,
@@ -154101,7 +147613,7 @@ The R package crossrun computes the joint distribution of the number of crossing
     sc:url "http://140.120.213.10:8080/crsd/main/home.jsp" .
 
 <https://bio.tools/crso> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0602,
@@ -154115,8 +147627,25 @@ The R package crossrun computes the joint distribution of the number of crossing
     sc:name "CRSO" ;
     sc:url "https://github.com/mikekleinsgit/CRSO/" .
 
+<https://bio.tools/crt> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0157 ;
+    sc:citation <https://doi.org/10.1186/1471-2105-8-209>,
+        "pmcid:PMC1924867",
+        "pubmed:17577412" ;
+    sc:description "CRISPR Recognition Tool" ;
+    sc:featureList edam:operation_3228 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "crt" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://www.room220.com/crt/" .
+
 <https://bio.tools/crtpowerdist> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2815,
         edam:topic_3379 ;
@@ -154133,7 +147662,7 @@ The R package crossrun computes the joint distribution of the number of crossing
     sc:url "https://github.com/douyangyd/CRTpowerdist" .
 
 <https://bio.tools/crunch> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_2259,
@@ -154150,7 +147679,7 @@ The R package crossrun computes the joint distribution of the number of crossing
     sc:url "https://crunch.unibas.ch" .
 
 <https://bio.tools/crustybase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0154,
@@ -154168,7 +147697,7 @@ The R package crossrun computes the joint distribution of the number of crossing
     sc:url "https://crustybase.org" .
 
 <https://bio.tools/crusview> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0780,
@@ -154188,10 +147717,9 @@ The R package crossrun computes the joint distribution of the number of crossing
 
 <https://bio.tools/crux> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:name "Mass spectrometry data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0121 ;
     sc:citation <https://doi.org/10.1021/pr500741y>,
@@ -154202,7 +147730,7 @@ The R package crossrun computes the joint distribution of the number of crossing
     sc:url "http://crux.ms/" .
 
 <https://bio.tools/cruxome> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0218,
         edam:topic_0622,
@@ -154223,32 +147751,30 @@ The R package crossrun computes the joint distribution of the number of crossing
         "Windows" ;
     sc:url "http://114.251.61.49:10024/cruxome/" .
 
-<https://bio.tools/cryo-EM> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0153,
-        edam:topic_0154,
-        edam:topic_2275,
-        edam:topic_3382 ;
-    sc:citation <https://doi.org/10.1002/PROT.25817>,
-        "pubmed:31576602" ;
-    sc:description """Cryo-electron microscopy targets in CASP13.
-
-13th Community Wide Experiment on the.
-
-Critical Assessment of Techniques for Protein Structure Prediction.
-
-Estimate of Model Accuracy Results.
-
-Target: T0984 T0984o T0995 T0995o T1020 T1020o.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'CASP13', 'Cryo-electron microscopy targets CASP13', 'CASP-style'""" ;
-    sc:featureList edam:operation_0474,
-        edam:operation_3350,
-        edam:operation_3456 ;
-    sc:name "cryo-EM" ;
-    sc:url "http://predictioncenter.org/casp13/cryoem_results.cgi" .
+<https://bio.tools/crws> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0099,
+        edam:topic_3474,
+        edam:topic_3534 ;
+    sc:citation <https://doi.org/10.1016/J.YMETH.2022.06.014>,
+        "pubmed:35810958" ;
+    sc:description "A web server for identifying circRNA-RBP variable-length binding sites based on stacked generalization ensemble deep learning network." ;
+    sc:featureList edam:operation_2464,
+        edam:operation_3436,
+        edam:operation_3901,
+        edam:operation_3902 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "CRWS" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <http://www.bioinformatics.team/circRNA-rbp-report/help> ;
+    sc:url "http://www.bioinformatics.team" .
 
 <https://bio.tools/cryo-em-image-simulator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -154265,7 +147791,7 @@ Target: T0984 T0984o T0995 T0995o T1020 T1020o.
     biotools:primaryContact "Fred Sigworth" .
 
 <https://bio.tools/cryoID> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0611,
@@ -154286,7 +147812,7 @@ Target: T0984 T0984o T0995 T0995o T1020 T1020o.
     sc:url "https://github.com/EICN-UCLA/cryoID" .
 
 <https://bio.tools/cryodrgn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0176,
         edam:topic_0611,
@@ -154306,7 +147832,7 @@ Target: T0984 T0984o T0995 T0995o T1020 T1020o.
     sc:url "https://github.com/zhonge/cryodrgn" .
 
 <https://bio.tools/cryoem_ontology> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Ontology" ;
     sc:applicationSubCategory edam:topic_0611 ;
     sc:description "Ontology to describe data and workflows in Cryo Electron Microscopy" ;
@@ -154316,14 +147842,14 @@ Target: T0984 T0984o T0995 T0995o T1020 T1020o.
 
 <https://bio.tools/cryosparc> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3424" ;
-            sc:name "Raw image" ;
-            sc:sameAs "http://edamontology.org/data_3424" ] ;
+            sc:additionalType "http://edamontology.org/data_3424" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Raw image" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_2065" ;
+            sc:name "Protein structure" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0611,
@@ -154340,8 +147866,26 @@ Target: T0984 T0984o T0995 T0995o T1020 T1020o.
     sc:softwareHelp <https://guide.cryosparc.com/?ref=cryosparc> ;
     sc:url "https://www.cryosparc.com/" .
 
+<https://bio.tools/cryovr> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Desktop application" ;
+    sc:applicationSubCategory edam:topic_0611,
+        edam:topic_3068,
+        edam:topic_3452 ;
+    sc:citation <https://doi.org/10.1107/S2059798322005654>,
+        "pmcid:PMC9248840",
+        "pubmed:35775989" ;
+    sc:description "CryoVR is a virtual reality training tool designed at Purdue University to familiarize users with cryoEM equipment, such as microscopes and sample preparation equipment, through a safe and accessible, virtual environment." ;
+    sc:featureList edam:operation_0307,
+        edam:operation_0337 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Other" ;
+    sc:name "CryoVR" ;
+    sc:operatingSystem "Windows" ;
+    sc:url "https://www.purdue.edu/cryoVR" .
+
 <https://bio.tools/cryprocessor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application",
         "Workflow" ;
@@ -154363,14 +147907,13 @@ Target: T0984 T0984o T0995 T0995o T1020 T1020o.
 
 <https://bio.tools/cryptodb> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2295" ;
-            sc:name "Gene ID" ;
-            sc:sameAs "http://edamontology.org/data_2295" ] ;
+            sc:additionalType "http://edamontology.org/data_2295" ;
+            sc:name "Gene ID" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0916" ;
-            sc:name "Gene report" ;
-            sc:sameAs "http://edamontology.org/data_0916" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0916" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Gene report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0621 ;
     sc:citation <https://doi.org/10.1093/nar/gkj078>,
@@ -154387,7 +147930,7 @@ Target: T0984 T0984o T0995 T0995o T1020 T1020o.
     sc:url "http://cryptodb.org/cryptodb/" .
 
 <https://bio.tools/cryptogenotyper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0632,
@@ -154407,10 +147950,10 @@ Target: T0984 T0984o T0995 T0995o T1020 T1020o.
 
 <https://bio.tools/crysalis> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence record" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3474 ;
@@ -154432,7 +147975,7 @@ Target: T0984 T0984o T0995 T0995o T1020 T1020o.
     biotools:primaryContact "Huilin Wang" .
 
 <https://bio.tools/crysol> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_1317,
@@ -154454,7 +147997,7 @@ Target: T0984 T0984o T0995 T0995o T1020 T1020o.
     sc:url "http://www.embl-hamburg.de/ExternalInfo/Research/Sax/crysol.html" .
 
 <https://bio.tools/crystalexplorer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3047 ;
     sc:citation <https://doi.org/10.1107/S1600576721002910>,
@@ -154472,7 +148015,7 @@ Target: T0984 T0984o T0995 T0995o T1020 T1020o.
     sc:url "https://crystalexplorer.net" .
 
 <https://bio.tools/crystals_MoS2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_1317,
@@ -154488,7 +148031,7 @@ Target: T0984 T0984o T0995 T0995o T1020 T1020o.
     sc:url "http://www.cryst.ehu.es" .
 
 <https://bio.tools/crystit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0605,
         edam:topic_3315 ;
@@ -154501,8 +148044,23 @@ Target: T0984 T0984o T0995 T0995o T1020 T1020o.
     sc:name "crystIT" ;
     sc:url "http://github.com/GKieslich/crystIT" .
 
+<https://bio.tools/cs-co> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Script" ;
+    sc:applicationSubCategory edam:topic_2640,
+        edam:topic_3382 ;
+    sc:citation <https://doi.org/10.1016/J.MEDIA.2022.102539>,
+        "pubmed:35926337" ;
+    sc:description "CS-CO is a hybrid self-supervised visual representation learning method tailored for H&E-stained histopathological images." ;
+    sc:featureList edam:operation_0337 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "CS-CO" ;
+    sc:url "https://github.com/easonyang1996/CS-CO" .
+
 <https://bio.tools/cs-pseq-gen> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0084 ;
@@ -154517,7 +148075,7 @@ Target: T0984 T0984o T0995 T0995o T1020 T1020o.
     sc:url "http://bioserv.rpbs.univ-paris-diderot.fr/software.html#cspseqgen" .
 
 <https://bio.tools/cs-rosetta3> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2275 ;
     sc:citation <https://doi.org/10.1007/s10723-012-9246-z> ;
@@ -154532,7 +148090,7 @@ Target: T0984 T0984o T0995 T0995o T1020 T1020o.
     biotools:primaryContact "WeNMR Center" .
 
 <https://bio.tools/cs23d> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0593,
         edam:topic_2275,
@@ -154549,7 +148107,7 @@ Target: T0984 T0984o T0995 T0995o T1020 T1020o.
     biotools:primaryContact "Feedback Form" .
 
 <https://bio.tools/csDMA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3474,
         edam:topic_3512,
@@ -154562,7 +148120,7 @@ Target: T0984 T0984o T0995 T0995o T1020 T1020o.
     sc:url "https://github.com/liuze-nwafu/csDMA" .
 
 <https://bio.tools/csRNA-seq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_0749,
@@ -154584,7 +148142,7 @@ Sequencing the 5' end of cap-protected RNAs enables the identification of Transc
     sc:url "http://homer.ucsd.edu/homer/ngs/csRNAseq/" .
 
 <https://bio.tools/csa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0097,
@@ -154606,7 +148164,7 @@ Sequencing the 5' end of cap-protected RNAs enables the identification of Transc
     biotools:primaryContact "I. Wohlers" .
 
 <https://bio.tools/csa-chip> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0102,
@@ -154627,7 +148185,7 @@ BACKGROUND:Chromatin immunoprecipitation sequencing (ChIP-seq) is a technology t
     sc:url "http://compubio.csu.edu.cn" .
 
 <https://bio.tools/csa-qbi-hough-tractography-diffusion-mri> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3304,
@@ -154644,7 +148202,7 @@ BACKGROUND:Chromatin immunoprecipitation sequencing (ChIP-seq) is a technology t
     biotools:primaryContact "Iman Aganj" .
 
 <https://bio.tools/csar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3169 ;
@@ -154664,7 +148222,7 @@ BACKGROUND:Chromatin immunoprecipitation sequencing (ChIP-seq) is a technology t
     biotools:primaryContact <http://orcid.org/0000-0002-6403-7262> .
 
 <https://bio.tools/csar_scaffolding> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0654,
@@ -154683,22 +148241,22 @@ BACKGROUND:Chromatin immunoprecipitation sequencing (ChIP-seq) is a technology t
 
 <https://bio.tools/csaw> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Sequence alignment" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ],
+            sc:additionalType "http://edamontology.org/data_0867" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Sequence alignment report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2012" ;
-            sc:name "Sequence coordinates" ;
-            sc:sameAs "http://edamontology.org/data_2012" ],
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Plot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0867" ;
-            sc:name "Sequence alignment report" ;
-            sc:sameAs "http://edamontology.org/data_0867" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2012" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Sequence coordinates" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -154721,7 +148279,7 @@ BACKGROUND:Chromatin immunoprecipitation sequencing (ChIP-seq) is a technology t
     biotools:primaryContact <http://orcid.org/0000-0002-3564-4813> .
 
 <https://bio.tools/csbfinder-s> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0102,
@@ -154740,7 +148298,7 @@ BACKGROUND:Chromatin immunoprecipitation sequencing (ChIP-seq) is a technology t
     sc:url "https://github.com/dinasv/CSBFinder" .
 
 <https://bio.tools/cscan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0160 ;
     sc:citation <https://doi.org/10.1093/nar/gks483> ;
@@ -154760,7 +148318,7 @@ BACKGROUND:Chromatin immunoprecipitation sequencing (ChIP-seq) is a technology t
         "Giulio Pavesi" .
 
 <https://bio.tools/cscape> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0622,
@@ -154779,7 +148337,7 @@ BACKGROUND:Chromatin immunoprecipitation sequencing (ChIP-seq) is a technology t
     biotools:primaryContact "Mark F. Rogers" .
 
 <https://bio.tools/cscape-somatic> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0622,
         edam:topic_0749,
@@ -154793,7 +148351,7 @@ BACKGROUND:Chromatin immunoprecipitation sequencing (ChIP-seq) is a technology t
     sc:url "http://CScape-somatic.biocompute.org.uk/" .
 
 <https://bio.tools/csccp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_2258,
@@ -154811,7 +148369,7 @@ BACKGROUND:Chromatin immunoprecipitation sequencing (ChIP-seq) is a technology t
     biotools:primaryContact "Yufeng J. Tseng" .
 
 <https://bio.tools/cscd2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0659,
@@ -154834,7 +148392,7 @@ BACKGROUND:Chromatin immunoprecipitation sequencing (ChIP-seq) is a technology t
     sc:url "http://geneyun.net/CSCD2" .
 
 <https://bio.tools/csd-ism> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3382 ;
@@ -154848,8 +148406,30 @@ BACKGROUND:Chromatin immunoprecipitation sequencing (ChIP-seq) is a technology t
     sc:name "CSD-ISM" ;
     sc:url "https://projects.gwdg.de/projects/csdism-2020" .
 
+<https://bio.tools/csdb> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0128,
+        edam:topic_0152,
+        edam:topic_0593,
+        edam:topic_0780 ;
+    sc:citation <https://doi.org/10.1038/S41597-022-01186-9>,
+        "pmcid:PMC8968703",
+        "pubmed:35354826" ;
+    sc:description "The Carbohydrate Structure Database is a free curated repository storing various data on glycans of bacterial, fungal and plant origins." ;
+    sc:featureList edam:operation_2421,
+        edam:operation_2422,
+        edam:operation_3431 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "CSDB" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://csdb.glycoscience.ru/" .
+
 <https://bio.tools/csdb_gt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0152,
         edam:topic_0219,
@@ -154865,7 +148445,7 @@ BACKGROUND:Chromatin immunoprecipitation sequencing (ChIP-seq) is a technology t
     sc:url "http://csdb.glycoscience.ru/gt.html" .
 
 <https://bio.tools/csdeconv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0654,
@@ -154883,7 +148463,7 @@ BACKGROUND:Chromatin immunoprecipitation sequencing (ChIP-seq) is a technology t
     sc:url "http://crab.rutgers.edu/~dslun/csdeconv/index.html" .
 
 <https://bio.tools/csea-db> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2229,
@@ -154903,14 +148483,14 @@ BACKGROUND:Chromatin immunoprecipitation sequencing (ChIP-seq) is a technology t
 
 <https://bio.tools/cshl_fastx_artifacts_filter> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1933" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:citation <https://doi.org/10.1093/nar/gkw343>,
@@ -154928,14 +148508,14 @@ BACKGROUND:Chromatin immunoprecipitation sequencing (ChIP-seq) is a technology t
 
 <https://bio.tools/cshl_fastx_clipper> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1933" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:citation <https://doi.org/10.1093/nar/gkw343>,
@@ -154953,14 +148533,14 @@ BACKGROUND:Chromatin immunoprecipitation sequencing (ChIP-seq) is a technology t
 
 <https://bio.tools/cshl_fastx_collapser> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1933" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:citation <https://doi.org/10.1093/nar/gkw343>,
@@ -154978,14 +148558,14 @@ BACKGROUND:Chromatin immunoprecipitation sequencing (ChIP-seq) is a technology t
 
 <https://bio.tools/cshl_fastx_nucleotides_distribution> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Image" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:citation <https://doi.org/10.1093/nar/gkw343>,
@@ -155003,14 +148583,14 @@ BACKGROUND:Chromatin immunoprecipitation sequencing (ChIP-seq) is a technology t
 
 <https://bio.tools/cshl_fastx_quality_statistics> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1932" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:citation <https://doi.org/10.1093/nar/gkw343>,
@@ -155028,14 +148608,14 @@ BACKGROUND:Chromatin immunoprecipitation sequencing (ChIP-seq) is a technology t
 
 <https://bio.tools/cshl_fastx_renamer> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1933" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:citation <https://doi.org/10.1093/nar/gkw343>,
@@ -155053,14 +148633,14 @@ BACKGROUND:Chromatin immunoprecipitation sequencing (ChIP-seq) is a technology t
 
 <https://bio.tools/cshl_fastx_reverse_complement> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1933" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:citation <https://doi.org/10.1093/nar/gkw343>,
@@ -155079,14 +148659,14 @@ BACKGROUND:Chromatin immunoprecipitation sequencing (ChIP-seq) is a technology t
 
 <https://bio.tools/cshl_fastx_trimmer> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1933" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:citation <https://doi.org/10.1093/nar/gkw343>,
@@ -155104,22 +148684,22 @@ BACKGROUND:Chromatin immunoprecipitation sequencing (ChIP-seq) is a technology t
 
 <https://bio.tools/cshl_princeton_fastx_barcode_splitter> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1933" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1932" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:citation <https://doi.org/10.1016/j.ymeth.2015.04.030>,
@@ -155137,7 +148717,7 @@ BACKGROUND:Chromatin immunoprecipitation sequencing (ChIP-seq) is a technology t
     biotools:primaryContact "Galaxy Support Team" .
 
 <https://bio.tools/cshmm-tf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0749,
@@ -155156,7 +148736,7 @@ BACKGROUND:Chromatin immunoprecipitation sequencing (ChIP-seq) is a technology t
     sc:url "https://github.com/jessica1338/CSHMM-TF-for-time-series-scRNA-Seq.git" .
 
 <https://bio.tools/csi-lstm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0154,
@@ -155177,7 +148757,7 @@ BACKGROUND:Chromatin immunoprecipitation sequencing (ChIP-seq) is a technology t
     sc:url "http://csi.wishartlab.com/cgi-bin/index.py" .
 
 <https://bio.tools/csm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_1775 ;
     sc:citation <https://doi.org/10.1186/1471-2164-12-S4-S12> ;
@@ -155192,8 +148772,32 @@ BACKGROUND:Chromatin immunoprecipitation sequencing (ChIP-seq) is a technology t
         "Windows" ;
     sc:url "http://homepages.dcc.ufmg.br/~dpires/csm/index.html" .
 
+<https://bio.tools/csm-ab> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1463" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Small molecule structure" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0199,
+        edam:topic_2275,
+        edam:topic_2830 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAB762>,
+        "pubmed:34734992" ;
+    sc:description "Graph-based antibody-antigen binding affinity prediction and docking scoring function." ;
+    sc:featureList edam:operation_0252,
+        edam:operation_0478,
+        edam:operation_0480 ;
+    sc:isAccessibleForFree true ;
+    sc:name "CSM-AB" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://biosig.unimelb.edu.au/csm_ab" .
+
 <https://bio.tools/csm-lig> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0154,
@@ -155210,8 +148814,52 @@ BACKGROUND:Chromatin immunoprecipitation sequencing (ChIP-seq) is a technology t
     sc:url "http://biosig.unimelb.edu.au/csm_lig/" ;
     biotools:primaryContact "Douglas Eduardo Valente Pires" .
 
+<https://bio.tools/csm-potential> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0121,
+        edam:topic_0128,
+        edam:topic_0130,
+        edam:topic_0166,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAC381>,
+        "pmcid:PMC9252741",
+        "pubmed:35609999" ;
+    sc:description "CSM-Potential is a resource for the study areas of a protein surface that are likely to mediate protein-protein and protein-ligand interactions." ;
+    sc:featureList edam:operation_0474,
+        edam:operation_2464,
+        edam:operation_2492 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "CSM-Potential" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <http://biosig.unimelb.edu.au/csm_potential/help> ;
+    sc:url "http://biosig.unimelb.edu.au/csm_potential" .
+
+<https://bio.tools/csmcarbohydrate> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Desktop application",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0152,
+        edam:topic_2275,
+        edam:topic_3306,
+        edam:topic_3314 ;
+    sc:citation <https://doi.org/10.1093/BIB/BBAB512>,
+        "pmcid:PMC8769910",
+        "pubmed:34882232" ;
+    sc:description "CSM-carbohydrate, using machine learning algorithms to accurately predict their binding affinity and rank docking poses as a scoring function." ;
+    sc:featureList edam:operation_0478 ;
+    sc:isAccessibleForFree true ;
+    sc:name "CSM-carbohydrate" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://biosig.unimelb.edu.au/csm_carbohydrate/" .
+
 <https://bio.tools/csmetapred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3510 ;
     sc:citation <https://doi.org/10.1186/s12859-017-1987-z> ;
@@ -155226,8 +148874,28 @@ BACKGROUND:Chromatin immunoprecipitation sequencing (ChIP-seq) is a technology t
     sc:url "http://14.139.227.206/csmetapred/" ;
     biotools:primaryContact "CSmetaPred Support" .
 
+<https://bio.tools/csmm> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_3382,
+        edam:topic_3520 ;
+    sc:citation <https://doi.org/10.12688/F1000RESEARCH.76828.1> ;
+    sc:description "The software for interactive evaluation of mass spectrometric imaging heterogeneity." ;
+    sc:featureList edam:operation_3214,
+        edam:operation_3432,
+        edam:operation_3694 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "CSMM" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://github.com/EvgenyZhvansky/Interactive_CSMM/wiki/Manual> ;
+    sc:url "https://github.com/EvgenyZhvansky/Interactive_CSMM" .
+
 <https://bio.tools/csmr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0634,
@@ -155250,7 +148918,7 @@ BACKGROUND:Chromatin immunoprecipitation sequencing (ChIP-seq) is a technology t
     sc:url "https://github.com/zcslab/CSMR" .
 
 <https://bio.tools/csn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -155269,7 +148937,7 @@ BACKGROUND:Chromatin immunoprecipitation sequencing (ChIP-seq) is a technology t
     sc:url "https://www.cs.tau.ac.il/~tamirtul/CSN-Autogen" .
 
 <https://bio.tools/csnap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154 ;
     sc:citation <https://doi.org/10.1371/journal.pcbi.1004153>,
@@ -155288,7 +148956,7 @@ BACKGROUND:Chromatin immunoprecipitation sequencing (ChIP-seq) is a technology t
     sc:url "http://services.mbi.ucla.edu/CSNAP/" .
 
 <https://bio.tools/csp-analyzer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0593,
         edam:topic_3336,
@@ -155307,7 +148975,7 @@ A fast and efficient multi-spectrum anlayzer for 2-D NMR Fragment Screening base
     sc:url "https://github.com/rubbs14/CSP-Analyzer/releases/tag/v1.0" .
 
 <https://bio.tools/cspritz> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2814 ;
     sc:citation <https://doi.org/10.1093/nar/gkr411> ;
@@ -155324,7 +148992,7 @@ A fast and efficient multi-spectrum anlayzer for 2-D NMR Fragment Screening base
     biotools:primaryContact "Silvio C.E. Tosatto" .
 
 <https://bio.tools/csq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0622,
@@ -155339,24 +149007,39 @@ A fast and efficient multi-spectrum anlayzer for 2-D NMR Fragment Screening base
     sc:url "http://samtools.github.io/bcftools/" ;
     biotools:primaryContact "Petr Danecek" .
 
+<https://bio.tools/csrira> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0108,
+        edam:topic_3053,
+        edam:topic_3068,
+        edam:topic_3325,
+        edam:topic_3577 ;
+    sc:citation <https://doi.org/10.1038/S41598-021-03379-5>,
+        "pmcid:PMC8668911",
+        "pubmed:34903789" ;
+    sc:description "Client Service Receipt Inventory as a standardised tool for measurement of socio-economic costs in the rare genetic disease population (CSRI-Ra)." ;
+    sc:featureList edam:operation_2428,
+        edam:operation_3435 ;
+    sc:isAccessibleForFree true ;
+    sc:name "CSRI-Ra" ;
+    sc:url "https://paed.hku.hk/e-form/csri-ra-registration-form.asp" .
+
 <https://bio.tools/css> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ] ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein structure" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ],
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:name "Protein features" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1537" ;
-            sc:name "Protein structure report" ;
-            sc:sameAs "http://edamontology.org/data_1537" ],
+            sc:additionalType "http://edamontology.org/data_1537" ;
+            sc:name "Protein structure report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2992" ;
-            sc:name "Protein structure image" ;
-            sc:sameAs "http://edamontology.org/data_2992" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2992" ;
+            sc:name "Protein structure image" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_1775,
         edam:topic_2814 ;
@@ -155377,30 +149060,30 @@ A fast and efficient multi-spectrum anlayzer for 2-D NMR Fragment Screening base
 
 <https://bio.tools/cssp> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1772" ;
-            sc:name "Score" ;
-            sc:sameAs "http://edamontology.org/data_1772" ],
+            sc:additionalType "http://edamontology.org/data_0867" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
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         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0867" ;
-            sc:name "Sequence alignment report" ;
-            sc:sameAs "http://edamontology.org/data_0867" ] ;
+            sc:additionalType "http://edamontology.org/data_1772" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Score" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0950" ;
-            sc:name "Mathematical model" ;
-            sc:sameAs "http://edamontology.org/data_0950" ],
+            sc:additionalType "http://edamontology.org/data_0950" ;
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+            sc:name "Mathematical model" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ],
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
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-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ],
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Plot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1669" ;
-            sc:name "P-value" ;
-            sc:sameAs "http://edamontology.org/data_1669" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1669" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "P-value" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2269,
@@ -155420,8 +149103,31 @@ A fast and efficient multi-spectrum anlayzer for 2-D NMR Fragment Screening base
     sc:url "http://bioconductor.org/packages/release/bioc/html/CSSP.html" ;
     biotools:primaryContact "Chandler Zuo" .
 
+<https://bio.tools/cssr> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Desktop application" ;
+    sc:applicationSubCategory edam:topic_0082,
+        edam:topic_0097,
+        edam:topic_0099,
+        edam:topic_2814 ;
+    sc:citation <https://doi.org/10.1107/S2059798322001292>,
+        "pmcid:PMC8972804",
+        "pubmed:35362469" ;
+    sc:description "Assignment of secondary structure to coarse-grained RNA tertiary structures." ;
+    sc:featureList edam:operation_0295,
+        edam:operation_0502,
+        edam:operation_2441,
+        edam:operation_3469 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-2.0" ;
+    sc:name "CSSR" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/pylelab/CSSR" .
+
 <https://bio.tools/cstea> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -155443,7 +149149,7 @@ A fast and efficient multi-spectrum anlayzer for 2-D NMR Fragment Screening base
         "Prof. Xing-Ming Zhao" .
 
 <https://bio.tools/cstminer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3511,
@@ -155459,8 +149165,32 @@ A fast and efficient multi-spectrum anlayzer for 2-D NMR Fragment Screening base
     sc:url "https://github.com/Luca0208/CST-Miner" ;
     biotools:primaryContact "GitHub Issues" .
 
+<https://bio.tools/cstone> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0196,
+        edam:topic_0749,
+        edam:topic_3170,
+        edam:topic_3308,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.1371/JOURNAL.PCBI.1009631>,
+        "pmcid:PMC8651127",
+        "pubmed:34813594" ;
+    sc:description "A de novo transcriptome assembler for short-read data that identifies non-chimeric contigs based on underlying graph structure." ;
+    sc:featureList edam:operation_0524,
+        edam:operation_3258,
+        edam:operation_3472,
+        edam:operation_3644,
+        edam:operation_3800 ;
+    sc:isAccessibleForFree true ;
+    sc:name "CStone" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://sourceforge.net/projects/cstone/" .
+
 <https://bio.tools/cstreet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0099,
@@ -155483,7 +149213,7 @@ A fast and efficient multi-spectrum anlayzer for 2-D NMR Fragment Screening base
     sc:url "https://doi.org/10.5281/zenodo.4483205" .
 
 <https://bio.tools/csupb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0621,
@@ -155500,8 +149230,34 @@ A fast and efficient multi-spectrum anlayzer for 2-D NMR Fragment Screening base
     sc:url "https://github.com/eggleader/cSupB" ;
     biotools:primaryContact <https://orcid.org/0000-0002-5993-1972> .
 
+<https://bio.tools/csurvival> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2654" ;
+            sc:name "Target ID (TTD)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_2640,
+        edam:topic_3360,
+        edam:topic_3379,
+        edam:topic_3418 ;
+    sc:citation <https://doi.org/10.1093/bib/bbac090>,
+        "pubmed:35368077" ;
+    sc:description "A web resource for biomarker interactions in cancer outcomes." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_2495,
+        edam:operation_3454 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "cSurvival" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://tau.cmmt.ubc.ca/cSurvival/help.html> ;
+    sc:url "https://tau.cmmt.ubc.ca/cSurvival" .
+
 <https://bio.tools/csvs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0208,
         edam:topic_0625,
@@ -155521,7 +149277,7 @@ A fast and efficient multi-spectrum anlayzer for 2-D NMR Fragment Screening base
     sc:url "http://csvs.babelomics.org/" .
 
 <https://bio.tools/csynth> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_3169,
@@ -155538,7 +149294,7 @@ A fast and efficient multi-spectrum anlayzer for 2-D NMR Fragment Screening base
     sc:url "https://csynth.org" .
 
 <https://bio.tools/ct-based-pseudo-ct-generation> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3306,
         edam:topic_3344,
@@ -155556,7 +149312,7 @@ A fast and efficient multi-spectrum anlayzer for 2-D NMR Fragment Screening base
     biotools:primaryContact "Matteo Maspero" .
 
 <https://bio.tools/ct-org> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0625,
@@ -155572,7 +149328,7 @@ A fast and efficient multi-spectrum anlayzer for 2-D NMR Fragment Screening base
     sc:url "https://github.com/bbrister/ctOrganSegmentation" .
 
 <https://bio.tools/ct-projection-simulator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_3306,
         edam:topic_3315,
@@ -155590,7 +149346,7 @@ A fast and efficient multi-spectrum anlayzer for 2-D NMR Fragment Screening base
     biotools:primaryContact "Robert Alvarez" .
 
 <https://bio.tools/ct-reconstruction> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -155608,7 +149364,7 @@ A fast and efficient multi-spectrum anlayzer for 2-D NMR Fragment Screening base
     biotools:primaryContact "Mark Bangert" .
 
 <https://bio.tools/ct-ring-removal> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -155624,8 +149380,30 @@ A fast and efficient multi-spectrum anlayzer for 2-D NMR Fragment Screening base
     sc:url "https://www.mathworks.com/matlabcentral/fileexchange/64189-ct-ring-removal-brun-et-al-2009" ;
     biotools:primaryContact "franzpx125" .
 
+<https://bio.tools/ctag> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workflow" ;
+    sc:applicationSubCategory edam:topic_0199,
+        edam:topic_0203,
+        edam:topic_2640,
+        edam:topic_3474,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.1038/S41598-021-04015-Y>,
+        "pmcid:PMC8741763",
+        "pubmed:34997044" ;
+    sc:description "cTaG (classify TSG and OG) is a tool used to identify tumour suppressor genes (TSGs) and oncogenes (OGs) using somatic mutation data." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_0337,
+        edam:operation_2454 ;
+    sc:isAccessibleForFree true ;
+    sc:name "cTaG" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/RamanLab/cTaG" .
+
 <https://bio.tools/ctc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0607 ;
@@ -155643,7 +149421,7 @@ A fast and efficient multi-spectrum anlayzer for 2-D NMR Fragment Screening base
     biotools:primaryContact "Antoine Lucas" .
 
 <https://bio.tools/ctcrbase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0659,
@@ -155662,7 +149440,7 @@ A fast and efficient multi-spectrum anlayzer for 2-D NMR Fragment Screening base
     sc:url "http://www.origin-gene.cn/database/ctcRbase/" .
 
 <https://bio.tools/ctd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0602,
@@ -155689,7 +149467,7 @@ A fast and efficient multi-spectrum anlayzer for 2-D NMR Fragment Screening base
     biotools:primaryContact "Contact form" .
 
 <https://bio.tools/ctdnatools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0654,
@@ -155706,7 +149484,7 @@ A fast and efficient multi-spectrum anlayzer for 2-D NMR Fragment Screening base
     sc:url "https://github.com/alkodsi/ctDNAtools" .
 
 <https://bio.tools/ctdpathsim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0208,
@@ -155724,7 +149502,7 @@ A fast and efficient multi-spectrum anlayzer for 2-D NMR Fragment Screening base
     sc:url "https://github.com/bozdaglab/CTDPathSim" .
 
 <https://bio.tools/ctdquerier> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2840,
         edam:topic_3077 ;
@@ -155740,7 +149518,7 @@ A fast and efficient multi-spectrum anlayzer for 2-D NMR Fragment Screening base
     biotools:primaryContact "Juan R Gonzalez" .
 
 <https://bio.tools/ctk> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0622,
@@ -155759,7 +149537,7 @@ A fast and efficient multi-spectrum anlayzer for 2-D NMR Fragment Screening base
         "Clever Toolkit Support" .
 
 <https://bio.tools/ctk_clip> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3656 ;
@@ -155778,10 +149556,9 @@ A fast and efficient multi-spectrum anlayzer for 2-D NMR Fragment Screening base
     biotools:primaryContact "Chaolin Zhang" .
 
 <https://bio.tools/ctlpred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
-    sc:applicationSubCategory edam:topic_2830,
-        edam:topic_3474 ;
+    sc:applicationSubCategory edam:topic_3474 ;
     sc:citation "pubmed:15297074" ;
     sc:description "Direct method for prediction of CTL epitopes crucial in subunit vaccine design.In direct methods the information or patterns of T cell epitopes instead of MHC binders were used for the development o f methods. The methods is based on elegant machine learning techniques like a Artificial Neural network and support vector machine ." ;
     sc:featureList edam:operation_0252,
@@ -155791,10 +149568,10 @@ A fast and efficient multi-spectrum anlayzer for 2-D NMR Fragment Screening base
         "Mac",
         "Windows" ;
     sc:softwareHelp <http://www.imtech.res.in/raghava/ctlpred/> ;
-    sc:url "http://www.imtech.res.in/raghava/ctlpred" .
+    sc:url "http://webs.iiitd.edu.in/raghava/ctlpred" .
 
 <https://bio.tools/ctmmweb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Web application" ;
     sc:applicationSubCategory edam:topic_2269,
@@ -155810,8 +149587,41 @@ A fast and efficient multi-spectrum anlayzer for 2-D NMR Fragment Screening base
     sc:name "ctmmweb" ;
     sc:url "http://ctmm.shinyapps.io/ctmmweb/" .
 
+<https://bio.tools/ctnet> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workbench" ;
+    sc:applicationSubCategory edam:topic_3361 ;
+    sc:citation <https://doi.org/10.1109/TPAMI.2021.3132068>,
+        "pubmed:34855586" ;
+    sc:description "Context-based Tandem Network for Semantic Segmentation." ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "CTNet" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/syp2ysy/CTNet" .
+
+<https://bio.tools/cto> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Ontology" ;
+    sc:applicationSubCategory edam:topic_0089,
+        edam:topic_0218,
+        edam:topic_3063,
+        edam:topic_3379 ;
+    sc:citation "pmcid:PMC9389640",
+        "pubmed:35992013" ;
+    sc:description "The core Ontology of Clinical Trials (CTO) a structured resource integrating basic terms and concepts in the context of clinical trials." ;
+    sc:featureList edam:operation_0306,
+        edam:operation_3352,
+        edam:operation_3435 ;
+    sc:isAccessibleForFree true ;
+    sc:license "CC-BY-4.0" ;
+    sc:name "CTO" ;
+    sc:url "https://github.com/ClinicalTrialOntology/CTO" .
+
 <https://bio.tools/ctpic> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0152,
         edam:topic_0154,
@@ -155830,7 +149640,7 @@ A fast and efficient multi-spectrum anlayzer for 2-D NMR Fragment Screening base
     sc:url "http://ctpic.nmrfam.wisc.edu" .
 
 <https://bio.tools/ctqi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3306,
         edam:topic_3384,
@@ -155849,7 +149659,7 @@ A fast and efficient multi-spectrum anlayzer for 2-D NMR Fragment Screening base
     biotools:primaryContact "Rik Nezich" .
 
 <https://bio.tools/ctr-db> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0208,
         edam:topic_2640,
@@ -155869,7 +149679,7 @@ A fast and efficient multi-spectrum anlayzer for 2-D NMR Fragment Screening base
     sc:url "http://ctrdb.ncpsb.org.cn/" .
 
 <https://bio.tools/ctsge> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -155888,7 +149698,7 @@ A fast and efficient multi-spectrum anlayzer for 2-D NMR Fragment Screening base
     biotools:primaryContact "Michal Sharabi-Schwager" .
 
 <https://bio.tools/ctsnd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_3063,
@@ -155906,7 +149716,7 @@ A fast and efficient multi-spectrum anlayzer for 2-D NMR Fragment Screening base
     biotools:primaryContact "S Scott Graham" .
 
 <https://bio.tools/cuDNN> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3474 ;
     sc:description "The NVIDIA CUDA® Deep Neural Network library (cuDNN) is a GPU-accelerated library of primitives for deep neural networks. cuDNN provides highly tuned implementations for standard routines such as forward and backward convolution, pooling, normalization, and activation layers." ;
@@ -155915,7 +149725,7 @@ A fast and efficient multi-spectrum anlayzer for 2-D NMR Fragment Screening base
     sc:url "https://developer.nvidia.com/cudnn" .
 
 <https://bio.tools/cuas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0780,
@@ -155933,7 +149743,7 @@ A fast and efficient multi-spectrum anlayzer for 2-D NMR Fragment Screening base
     sc:url "http://cmb.bnu.edu.cn/alt_iso/index.php" .
 
 <https://bio.tools/cubap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0194,
@@ -155954,7 +149764,7 @@ A fast and efficient multi-spectrum anlayzer for 2-D NMR Fragment Screening base
     sc:url "https://cubap.byu.edu" .
 
 <https://bio.tools/cubdl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_3954 ;
     sc:citation <https://doi.org/10.1109/TUFFC.2021.3094849>,
@@ -155968,7 +149778,7 @@ A fast and efficient multi-spectrum anlayzer for 2-D NMR Fragment Screening base
     sc:url "https://cubdl.jhu.edu" .
 
 <https://bio.tools/cube-db> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0621,
@@ -155987,7 +149797,7 @@ A fast and efficient multi-spectrum anlayzer for 2-D NMR Fragment Screening base
         "Ms. Zhang Zong Hong" .
 
 <https://bio.tools/cubic-cloud> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Workbench" ;
     sc:applicationSubCategory edam:topic_0102,
@@ -156004,7 +149814,7 @@ A fast and efficient multi-spectrum anlayzer for 2-D NMR Fragment Screening base
     sc:url "https://cubic-cloud.com" .
 
 <https://bio.tools/cublock> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3170,
@@ -156022,7 +149832,7 @@ A fast and efficient multi-spectrum anlayzer for 2-D NMR Fragment Screening base
     sc:url "https://www.mathworks.com/matlabcentral/fileexchange/77882-cublock" .
 
 <https://bio.tools/cuda-ec> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0654,
@@ -156039,7 +149849,7 @@ A fast and efficient multi-spectrum anlayzer for 2-D NMR Fragment Screening base
     biotools:primaryContact "Nvidia support" .
 
 <https://bio.tools/cuda-meme> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0160 ;
@@ -156053,7 +149863,7 @@ A fast and efficient multi-spectrum anlayzer for 2-D NMR Fragment Screening base
     sc:url "https://sites.google.com/site/yongchaosoftware/Home/cuda-meme" .
 
 <https://bio.tools/cuda-sim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2259,
@@ -156069,7 +149879,7 @@ A fast and efficient multi-spectrum anlayzer for 2-D NMR Fragment Screening base
     sc:url "http://www.theosysbio.bio.ic.ac.uk/resources/cuda-sim" .
 
 <https://bio.tools/cudasw> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1186/1471-2105-14-117> ;
@@ -156084,7 +149894,7 @@ A fast and efficient multi-spectrum anlayzer for 2-D NMR Fragment Screening base
     sc:url "http://cudasw.sourceforge.net/" .
 
 <https://bio.tools/cue> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0632,
         edam:topic_0654,
@@ -156102,46 +149912,46 @@ A fast and efficient multi-spectrum anlayzer for 2-D NMR Fragment Screening base
 
 <https://bio.tools/cuffcompare> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2306" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2306" ;
+            sc:name "Data" ] ;
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@@ -156160,114 +149970,114 @@ A fast and efficient multi-spectrum anlayzer for 2-D NMR Fragment Screening base
 
 <https://bio.tools/cuffdiff> a sc:SoftwareApplication ;
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-            sc:name "Data" ;
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+            sc:additionalType "http://edamontology.org/data_0006" ;
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@@ -156289,102 +150099,90 @@ A fast and efficient multi-spectrum anlayzer for 2-D NMR Fragment Screening base
 
 <https://bio.tools/cufflinks> a sc:SoftwareApplication ;
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-            sc:sameAs "http://edamontology.org/data_3134" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0951" ;
+            sc:name "Statistical estimate score" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Suite" ;
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@@ -156416,7 +150214,7 @@ A fast and efficient multi-spectrum anlayzer for 2-D NMR Fragment Screening base
     biotools:primaryContact "Cole Trapnell Lab" .
 
 <https://bio.tools/cufflinks-support-package-bioinformatics-toolbox> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3170,
@@ -156436,7 +150234,7 @@ A fast and efficient multi-spectrum anlayzer for 2-D NMR Fragment Screening base
     biotools:primaryContact "MathWorks Bioinformatics Team" .
 
 <https://bio.tools/cui2vec> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0218,
         edam:topic_3063,
@@ -156452,7 +150250,7 @@ A fast and efficient multi-spectrum anlayzer for 2-D NMR Fragment Screening base
     sc:url "https://github.com/beamandrew/cui2vec" .
 
 <https://bio.tools/culebront> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0621,
@@ -156465,7 +150263,7 @@ A fast and efficient multi-spectrum anlayzer for 2-D NMR Fragment Screening base
     sc:url "https://github.com/SouthGreenPlatform/CulebrONT_pipeline" .
 
 <https://bio.tools/cummerbund> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3168 ;
@@ -156484,7 +150282,7 @@ A fast and efficient multi-spectrum anlayzer for 2-D NMR Fragment Screening base
     biotools:primaryContact "Loyal A. Goff" .
 
 <https://bio.tools/cumulativ-mann-kendall-trend-test> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0621,
@@ -156507,14 +150305,13 @@ A fast and efficient multi-spectrum anlayzer for 2-D NMR Fragment Screening base
 
 <https://bio.tools/cuneiform> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0949" ;
-            sc:name "Workflow metadata" ;
-            sc:sameAs "http://edamontology.org/data_0949" ] ;
+            sc:additionalType "http://edamontology.org/data_0949" ;
+            sc:encodingFormat "http://edamontology.org/format_2032" ;
+            sc:name "Workflow metadata" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1050" ;
-            sc:name "File name" ;
-            sc:sameAs "http://edamontology.org/data_1050" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1050" ;
+            sc:name "File name" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0769,
@@ -156540,7 +150337,7 @@ A fast and efficient multi-spectrum anlayzer for 2-D NMR Fragment Screening base
     biotools:primaryContact "Jörgen Brandt" .
 
 <https://bio.tools/cupp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0152,
         edam:topic_0154,
@@ -156559,7 +150356,7 @@ A fast and efficient multi-spectrum anlayzer for 2-D NMR Fragment Screening base
     sc:url "https://cupp.info" .
 
 <https://bio.tools/cupsat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0130,
@@ -156581,31 +150378,8 @@ A fast and efficient multi-spectrum anlayzer for 2-D NMR Fragment Screening base
     sc:url "http://cupsat.tu-bs.de/" ;
     biotools:primaryContact "Prof. Dr. Dietmar Schomburg" .
 
-<https://bio.tools/curatedAdipoRNA> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0203,
-        edam:topic_3068,
-        edam:topic_3169,
-        edam:topic_3170,
-        edam:topic_3382 ;
-    sc:citation <https://doi.org/10.1080/21623945.2019.1697563>,
-        "pubmed:31809632" ;
-    sc:description """Modelling the gene expression and the DNA-binding in the 3T3-L1 differentiating adipocytes.
-
-A Curated RNA-Seq Dataset of MDI-induced Differentiated Adipocytes (3T3-L1).
-
-In this document, we introduce the purpose of the curatedAdipoRNA package, its contents and its potential use cases. This package is a curated dataset of RNA-Seq samples. The samples are MDI-induced pre-phagocytes (3T3-L1) at different time points/stage of differentiation. The package document the data collection, pre-processing and processing. In addition to the documentation, the package contains the scripts that was used to generated the data in inst/scripts/ and the final RangedSummarizedExperiment object in data/.
-
-DOI: 10.18129/B9.bioc.curatedAdipoRNA.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'curatedAdipoChIP', 'curatedAdipoRNA curatedAdipoChIP'""" ;
-    sc:featureList edam:operation_3563,
-        edam:operation_3900,
-        edam:operation_3901 ;
-    sc:name "curatedAdipoRNA" ;
-    sc:url "https://github.com/MahShaaban/curatedAdipoRNA" .
-
 <https://bio.tools/curatedMetagenomicData> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2815,
         edam:topic_3301 ;
@@ -156616,7 +150390,7 @@ DOI: 10.18129/B9.bioc.curatedAdipoRNA.
     sc:url "https://waldronlab.io/curatedMetagenomicData/" .
 
 <https://bio.tools/curatedadipoarray> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0202,
         edam:topic_0203,
@@ -156636,8 +150410,43 @@ DOI: 10.18129/B9.bioc.curatedAdipoRNA.
     sc:name "curatedAdipoArray" ;
     sc:url "https://bioconductor.org/packages/curatedAdipoArray" .
 
+<https://bio.tools/curc> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_0654,
+        edam:topic_3168 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC333>,
+        "pubmed:35579371" ;
+    sc:description "A GPU-accelerated reference-free compressor for high-throughput sequencing reads of FASTQ files." ;
+    sc:featureList edam:operation_0232,
+        edam:operation_3198 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "CURC" ;
+    sc:operatingSystem "Linux" ;
+    sc:url "https://github.com/BioinfoSZU/CURC" .
+
+<https://bio.tools/currmg> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Workbench" ;
+    sc:applicationSubCategory edam:topic_0602,
+        edam:topic_0605,
+        edam:topic_3336,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1093/BIB/BBAC099>,
+        "pubmed:35368074" ;
+    sc:description "An efficient curriculum learning-based strategy for molecular graph learning." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3802,
+        edam:operation_4009 ;
+    sc:license "Not licensed" ;
+    sc:name "CurrMG" ;
+    sc:url "https://github.com/gu-yaowen/CurrMG" .
+
 <https://bio.tools/curtain> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196 ;
     sc:citation <https://doi.org/10.1186/2047-217X-2-10> ;
@@ -156648,17 +150457,8 @@ DOI: 10.18129/B9.bioc.curatedAdipoRNA.
     sc:softwareHelp <https://code.google.com/archive/p/curtain/wikis> ;
     sc:url "http://code.google.com/p/curtain/" .
 
-<https://bio.tools/curve-fitting> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0202,
-        edam:topic_0602,
-        edam:topic_0749 ;
-    sc:citation <https://doi.org/10.1101/772293> ;
-    sc:description "> VERY_LOW CONFIDENCE! | > HOMEPAGE BROKEN! | > CORRECT NAME OF TOOL COULD ALSO BE 'arrestin', 'agonism', 'arrestin recruitment', 'kinetic' | A new kinetic method for measuring agonist efficacy and ligand bias using high resolution biosensors and a kinetic data analysis framework | ABSTRACT The kinetics dynamics of signaling are of increasing value for G-protein-coupled receptor therapeutic development, including spatiotemporal signaling and the kinetic context of biased agonism. Effective application of signaling kinetics to developing new therapeutics requires reliable kinetic assays and an analysis framework to extract kinetic pharmacological parameters. Here we describe a platform for measuring arrestin recruitment kinetics to GPCRs using a high quantum yield, genetically encoded fluorescent biosensor, and a new analysis framework to quantify the recruitment kinetics" ;
-    sc:name "curve-fitting" ;
-    sc:url "http://www.graphpad.com/guides/prism/8/curvefitting/index.htm?reg_exponential_associat" .
-
 <https://bio.tools/curves> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0082,
@@ -156682,7 +150482,7 @@ DOI: 10.18129/B9.bioc.curatedAdipoRNA.
     biotools:primaryContact "R. Lavery" .
 
 <https://bio.tools/cushaw3> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0622,
@@ -156702,14 +150502,12 @@ DOI: 10.18129/B9.bioc.curatedAdipoRNA.
 
 <https://bio.tools/cusp> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2887" ;
-            sc:name "Nucleic acid sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2887" ] ;
+            sc:additionalType "http://edamontology.org/data_2887" ;
+            sc:name "Nucleic acid sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1597" ;
-            sc:name "Codon usage table" ;
-            sc:sameAs "http://edamontology.org/data_1597" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1597" ;
+            sc:name "Codon usage table" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -156739,7 +150537,7 @@ DOI: 10.18129/B9.bioc.curatedAdipoRNA.
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/cusp.html" .
 
 <https://bio.tools/custommune> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0781,
@@ -156757,30 +150555,30 @@ DOI: 10.18129/B9.bioc.curatedAdipoRNA.
 
 <https://bio.tools/customprodb> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ],
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence variations" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1106" ;
-            sc:name "dbSNP ID" ;
-            sc:sameAs "http://edamontology.org/data_1106" ],
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Annotation track" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3264" ;
-            sc:name "COSMIC ID" ;
-            sc:sameAs "http://edamontology.org/data_3264" ],
+            sc:additionalType "http://edamontology.org/data_3264" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "COSMIC ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ],
+            sc:additionalType "http://edamontology.org/data_1106" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "dbSNP ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ] ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence alignment" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2886" ;
-            sc:name "Protein sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2886" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2886" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence record" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3168,
@@ -156801,7 +150599,7 @@ DOI: 10.18129/B9.bioc.curatedAdipoRNA.
     biotools:primaryContact "xiaojing wang" .
 
 <https://bio.tools/cusvardb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0769,
@@ -156822,14 +150620,14 @@ DOI: 10.18129/B9.bioc.curatedAdipoRNA.
 
 <https://bio.tools/cutadapt> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3495" ;
-            sc:name "RNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3495" ] ;
+            sc:additionalType "http://edamontology.org/data_3495" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "RNA sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3495" ;
-            sc:name "RNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3495" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3495" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "RNA sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0632,
@@ -156848,7 +150646,7 @@ DOI: 10.18129/B9.bioc.curatedAdipoRNA.
     biotools:primaryContact "Marcel Martin" .
 
 <https://bio.tools/cuteSV> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3168,
         edam:topic_3175,
@@ -156866,7 +150664,7 @@ DOI: 10.18129/B9.bioc.curatedAdipoRNA.
     sc:url "https://github.com/tjiangHIT/cuteSV" .
 
 <https://bio.tools/cutevariant> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0622,
@@ -156884,10 +150682,9 @@ DOI: 10.18129/B9.bioc.curatedAdipoRNA.
 
 <https://bio.tools/cutgextract> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1597" ;
-            sc:name "Codon usage table" ;
-            sc:sameAs "http://edamontology.org/data_1597" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1597" ;
+            sc:name "Codon usage table" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -156918,14 +150715,13 @@ DOI: 10.18129/B9.bioc.curatedAdipoRNA.
 
 <https://bio.tools/cuticledb> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2715" ;
-            sc:name "Protein ID (CuticleDB)" ;
-            sc:sameAs "http://edamontology.org/data_2715" ] ;
+            sc:additionalType "http://edamontology.org/data_2715" ;
+            sc:name "Protein ID (CuticleDB)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0896" ;
-            sc:name "Protein report" ;
-            sc:sameAs "http://edamontology.org/data_0896" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0896" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Protein report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0623 ;
     sc:citation <https://doi.org/10.1186/1471-2105-5-138>,
@@ -156944,7 +150740,7 @@ DOI: 10.18129/B9.bioc.curatedAdipoRNA.
     biotools:primaryContact "Biophysics and Bioinformatics Laboratory,  University of Athens" .
 
 <https://bio.tools/cutlang> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3315,
         edam:topic_3318,
@@ -156964,7 +150760,7 @@ DOI: 10.18129/B9.bioc.curatedAdipoRNA.
     sc:url "https://github.com/unelg/CutLang" .
 
 <https://bio.tools/cutruntools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3169,
@@ -156983,14 +150779,12 @@ DOI: 10.18129/B9.bioc.curatedAdipoRNA.
 
 <https://bio.tools/cutseq> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -157020,7 +150814,7 @@ DOI: 10.18129/B9.bioc.curatedAdipoRNA.
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/cutseq.html" .
 
 <https://bio.tools/cuttlefish> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0780,
@@ -157035,7 +150829,7 @@ DOI: 10.18129/B9.bioc.curatedAdipoRNA.
     sc:url "https://github.com/COMBINE-lab/Cuttlefish" .
 
 <https://bio.tools/cv1000-bacteria-quantifier> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -157054,7 +150848,7 @@ DOI: 10.18129/B9.bioc.curatedAdipoRNA.
     biotools:primaryContact "Abigail Reens" .
 
 <https://bio.tools/cv_event_predict> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3335,
         edam:topic_3399,
         edam:topic_3422 ;
@@ -157068,7 +150862,7 @@ DOI: 10.18129/B9.bioc.curatedAdipoRNA.
     sc:url "https://statacademy.shinyapps.io/App_inaguma_20190717/" .
 
 <https://bio.tools/cvae> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2258,
         edam:topic_2275,
@@ -157086,7 +150880,7 @@ DOI: 10.18129/B9.bioc.curatedAdipoRNA.
     biotools:primaryContact "Woo Youn Kim" .
 
 <https://bio.tools/cvcdap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Bioinformatics portal" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0199,
@@ -157103,8 +150897,28 @@ DOI: 10.18129/B9.bioc.curatedAdipoRNA.
     sc:name "CVCDAP" ;
     sc:url "https://omics.bjcancer.org/cvcdap/" .
 
+<https://bio.tools/cvd> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0634,
+        edam:topic_3063,
+        edam:topic_3335,
+        edam:topic_3360,
+        edam:topic_3422 ;
+    sc:citation <https://doi.org/10.1186/s12967-021-03210-9>,
+        "pmcid:PMC8722174",
+        "pubmed:34980174" ;
+    sc:description "Incidence and risk of CVD in people with liver disease" ;
+    sc:featureList edam:operation_2422 ;
+    sc:isAccessibleForFree true ;
+    sc:name "CVD" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://lailab.shinyapps.io/cvd_in_liver_disease/" .
+
 <https://bio.tools/cve> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0199,
@@ -157123,7 +150937,7 @@ DOI: 10.18129/B9.bioc.curatedAdipoRNA.
     biotools:primaryContact "Andreas Mock" .
 
 <https://bio.tools/cvid> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0769,
         edam:topic_3400,
@@ -157140,7 +150954,7 @@ Computational_Pipeline_CVID.""" ;
     sc:url "https://github.com/saeyslab/Computational_Pipeline_CVID" .
 
 <https://bio.tools/cvid-image> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_3382,
         edam:topic_3474 ;
@@ -157151,8 +150965,32 @@ Computational_Pipeline_CVID.""" ;
     sc:name "CVID" ;
     sc:url "https://github.com/Yingjun-Du/VID" .
 
+<https://bio.tools/cview> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Desktop application" ;
+    sc:applicationSubCategory edam:topic_0080,
+        edam:topic_0154,
+        edam:topic_0199,
+        edam:topic_3168 ;
+    sc:citation <https://doi.org/10.1371/journal.pone.0259726>,
+        "pmcid:PMC9191720",
+        "pubmed:35696379" ;
+    sc:description "CView is an alignment visualizer that expands on the per-site representation of residues through the incorporation of a dynamic network that is based on the summarization of diversity present across different regions of the alignment. The relationship that sequence regions that are currently on screen have to other regions of diversity within the alignment can be observed, thus increasing intuitive insight." ;
+    sc:featureList edam:operation_0291,
+        edam:operation_0292,
+        edam:operation_3196,
+        edam:operation_3925 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Other" ;
+    sc:name "CView" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://sourceforge.net/p/cview/wiki/Help/> ;
+    sc:url "https://sourceforge.net/projects/cview/" .
+
 <https://bio.tools/cvtree> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Web application",
         "Workflow" ;
@@ -157179,7 +151017,7 @@ Computational_Pipeline_CVID.""" ;
     sc:url "https://github.com/ghzuo/cvtree" .
 
 <https://bio.tools/cvxb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -157199,7 +151037,7 @@ Computational_Pipeline_CVID.""" ;
     biotools:primaryContact "Dominique Zosso" .
 
 <https://bio.tools/cwSDTWnano> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_2885,
@@ -157216,7 +151054,7 @@ Here we proposed two novel algorithms, the Direct Subsequence Dynamic Time Warpi
     sc:url "https://github.com/icthrm/cwSDTWnano" .
 
 <https://bio.tools/cwdprnp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0634,
@@ -157233,14 +151071,14 @@ Here we proposed two novel algorithms, the Direct Subsequence Dynamic Time Warpi
     biotools:primaryContact "William L. Miller" .
 
 <https://bio.tools/cwl_training> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "Automatically built VM used for a remote CWL training" ;
     sc:name "CWL Training" ;
     sc:softwareVersion "2.0" ;
     sc:url "https://github.com/EMBL-EBI-TSI/cpa-bioexcel-cwl" .
 
 <https://bio.tools/cwly-pred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0821,
@@ -157254,7 +151092,7 @@ Here we proposed two novel algorithms, the Direct Subsequence Dynamic Time Warpi
     sc:url "http://server.malab.cn/CWLy-pred/index.jsp" .
 
 <https://bio.tools/cwly-svm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0821,
@@ -157271,7 +151109,7 @@ Here we proposed two novel algorithms, the Direct Subsequence Dynamic Time Warpi
     sc:url "http://server.malab.cn/CWLy-SVM/index.jsp" .
 
 <https://bio.tools/cwords> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
@@ -157292,7 +151130,7 @@ Here we proposed two novel algorithms, the Direct Subsequence Dynamic Time Warpi
     biotools:primaryContact "Simon Horskjær Rasmussen" .
 
 <https://bio.tools/cyana> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0593,
@@ -157314,7 +151152,7 @@ Here we proposed two novel algorithms, the Direct Subsequence Dynamic Time Warpi
     sc:url "http://www.cyana.org/wiki/index.php/Main_Page" .
 
 <https://bio.tools/cyanimator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0602 ;
@@ -157333,7 +151171,7 @@ Here we proposed two novel algorithms, the Direct Subsequence Dynamic Time Warpi
     biotools:primaryContact <http://orcid.org/0000-0003-0290-7979> .
 
 <https://bio.tools/cyanno> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0804,
@@ -157351,7 +151189,7 @@ Here we proposed two novel algorithms, the Direct Subsequence Dynamic Time Warpi
     biotools:primaryContact <https://orcid.org/0000-0002-3093-2568> .
 
 <https://bio.tools/cyanobase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0621,
@@ -157371,22 +151209,22 @@ Here we proposed two novel algorithms, the Direct Subsequence Dynamic Time Warpi
 
 <https://bio.tools/cyanolyase> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ],
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0858" ;
-            sc:name "Sequence signature matches" ;
-            sc:sameAs "http://edamontology.org/data_0858" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1333" ;
+            sc:name "Sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0858" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Sequence signature matches" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0623 ;
     sc:citation <https://doi.org/10.1093/nar/gks1091> ;
@@ -157403,8 +151241,34 @@ Here we proposed two novel algorithms, the Direct Subsequence Dynamic Time Warpi
     sc:url "http://cyanolyase.genouest.org/" ;
     biotools:primaryContact "GenOuest" .
 
+<https://bio.tools/cyanoomicsdb> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1900" ;
+            sc:name "NCBI locus tag" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0121,
+        edam:topic_0154,
+        edam:topic_0203,
+        edam:topic_0601,
+        edam:topic_0622 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAB891>,
+        "pmcid:PMC8728175",
+        "pubmed:34614159" ;
+    sc:description "An integrated omics database for functional genomic analysis of cyanobacteria." ;
+    sc:featureList edam:operation_0303,
+        edam:operation_0314,
+        edam:operation_2422,
+        edam:operation_3663 ;
+    sc:isAccessibleForFree true ;
+    sc:name "CyanoOmicsDB" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://www.cyanoomics.cn/" .
+
 <https://bio.tools/cyanopath> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3174,
@@ -157422,7 +151286,7 @@ Here we proposed two novel algorithms, the Direct Subsequence Dynamic Time Warpi
     sc:url "http://www.csbg-jlu.info/CyanoPATH" .
 
 <https://bio.tools/cyanorak> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0114,
         edam:topic_0610,
         edam:topic_0625,
@@ -157439,7 +151303,7 @@ Here we proposed two novel algorithms, the Direct Subsequence Dynamic Time Warpi
     sc:url "http://www.sb-roscoff.fr/cyanorak" .
 
 <https://bio.tools/cyanus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0804,
         edam:topic_3170,
@@ -157461,7 +151325,7 @@ Here we proposed two novel algorithms, the Direct Subsequence Dynamic Time Warpi
     sc:url "https://exbio.wzw.tum.de/cyanus/" .
 
 <https://bio.tools/cyber-t> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0632,
         edam:topic_3168,
@@ -157483,8 +151347,26 @@ Here we proposed two novel algorithms, the Direct Subsequence Dynamic Time Warpi
     biotools:primaryContact "For bugs and general help (Subject=CyberT)",
         "For commercial licenses (Subject=CyberT)" .
 
+<https://bio.tools/cybersco> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Desktop application" ;
+    sc:applicationSubCategory edam:topic_2229,
+        edam:topic_3306,
+        edam:topic_3382,
+        edam:topic_3474,
+        edam:topic_3520 ;
+    sc:citation <https://doi.org/10.1038/S41598-022-15207-5>,
+        "pmcid:PMC9270370",
+        "pubmed:35803978" ;
+    sc:description "CyberSco.py is a software written in Python for performing Conditional Microscopy. It was conceived to be available to none expert users with a simple intuitive GUI interface and easy syntax for predefined experiments." ;
+    sc:featureList edam:operation_3443,
+        edam:operation_3799 ;
+    sc:license "CC-BY-NC-SA-4.0" ;
+    sc:name "CyberSco" ;
+    sc:url "https://github.com/Lab513/CyberSco.Py" .
+
 <https://bio.tools/cyby2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0209,
         edam:topic_2258,
@@ -157500,8 +151382,27 @@ Here we proposed two novel algorithms, the Direct Subsequence Dynamic Time Warpi
     sc:name "CyBy2" ;
     sc:url "https://github.com/stefan-hoeck/cyby2" .
 
+<https://bio.tools/cycflowdec> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0602,
+        edam:topic_2269 ;
+    sc:citation <https://doi.org/10.1016/J.SOFTX.2021.100676>,
+        "pmcid:PMC8545271",
+        "pubmed:34703873" ;
+    sc:description "A Python module for decomposing flow networks using simple cycles." ;
+    sc:featureList edam:operation_3799,
+        edam:operation_3927 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "CycFlowDec" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/austenb28/CycFlowDec" .
+
 <https://bio.tools/cycle> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203 ;
@@ -157520,7 +151421,7 @@ Here we proposed two novel algorithms, the Direct Subsequence Dynamic Time Warpi
     biotools:primaryContact <http://orcid.org/0000-0002-6245-8071> .
 
 <https://bio.tools/cyclebase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0621,
@@ -157543,7 +151444,7 @@ Here we proposed two novel algorithms, the Direct Subsequence Dynamic Time Warpi
         "Rasmus Wernersson" .
 
 <https://bio.tools/cyclobranch> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -157568,7 +151469,7 @@ Here we proposed two novel algorithms, the Direct Subsequence Dynamic Time Warpi
     sc:url "https://ms.biomed.cas.cz/cyclobranch/" .
 
 <https://bio.tools/cyclops> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154 ;
     sc:citation <https://doi.org/10.1021/ci100431r> ;
@@ -157584,14 +151485,13 @@ Here we proposed two novel algorithms, the Direct Subsequence Dynamic Time Warpi
 
 <https://bio.tools/cyclus3d> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ] ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:encodingFormat "http://edamontology.org/format_3477" ;
+            sc:name "Pathway or network" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:name "Image" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0602 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btr182> ;
@@ -157606,16 +151506,39 @@ Here we proposed two novel algorithms, the Direct Subsequence Dynamic Time Warpi
     sc:softwareVersion "1" ;
     sc:url "http://bioinformatics.psb.ugent.be/software/details/CyClus3D" .
 
+<https://bio.tools/cycpeptppb> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Desktop application" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0202,
+        edam:topic_3336,
+        edam:topic_3375 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAB726>,
+        "pmcid:PMC8796384",
+        "pubmed:34849593" ;
+    sc:description "CycPeptPPB is a predictor of Plasma Protein Binding rate for cyclic peptide with high performance focusing on residue-level features and circularity." ;
+    sc:featureList edam:operation_0480,
+        edam:operation_3092,
+        edam:operation_3891,
+        edam:operation_4009 ;
+    sc:isAccessibleForFree true ;
+    sc:license "BSD-3-Clause" ;
+    sc:name "CycPeptPPB" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/akiyamalab/cycpeptppb" .
+
 <https://bio.tools/cydar> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3483" ;
-            sc:name "Spectrum" ;
-            sc:sameAs "http://edamontology.org/data_3483" ] ;
+            sc:additionalType "http://edamontology.org/data_3483" ;
+            sc:encodingFormat "http://edamontology.org/format_3245" ;
+            sc:name "Spectrum" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3360 ;
@@ -157634,7 +151557,7 @@ Here we proposed two novel algorithms, the Direct Subsequence Dynamic Time Warpi
     biotools:primaryContact "Aaron Lun" .
 
 <https://bio.tools/cydataseries> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_2259 ;
     sc:description "a plugin for importing and handling time series and other forms of repeated measurements data in Cytoscape" ;
@@ -157642,16 +151565,38 @@ Here we proposed two novel algorithms, the Direct Subsequence Dynamic Time Warpi
     sc:name "cyDataSeries" ;
     sc:url "https://apps.cytoscape.org/apps/cydataseries" .
 
+<https://bio.tools/cyfi-map> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0602,
+        edam:topic_0634,
+        edam:topic_2259,
+        edam:topic_3388,
+        edam:topic_3407 ;
+    sc:citation <https://doi.org/10.1038/S41598-021-01618-3>,
+        "pmcid:PMC8592983",
+        "pubmed:34782688" ;
+    sc:description "An interactive pathway-based resource for cystic fibrosis." ;
+    sc:featureList edam:operation_0533,
+        edam:operation_3196,
+        edam:operation_3925 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "CyFi-MAP" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://cysticfibrosismap.github.io/" .
+
 <https://bio.tools/cygd> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1026" ;
-            sc:name "Gene symbol" ;
-            sc:sameAs "http://edamontology.org/data_1026" ] ;
+            sc:additionalType "http://edamontology.org/data_1026" ;
+            sc:name "Gene symbol" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0916" ;
-            sc:name "Gene report" ;
-            sc:sameAs "http://edamontology.org/data_0916" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0916" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Gene report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0621,
@@ -157665,7 +151610,7 @@ Here we proposed two novel algorithms, the Direct Subsequence Dynamic Time Warpi
     biotools:primaryContact "Dr. Ulrich Güldener" .
 
 <https://bio.tools/cylofold> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0097,
@@ -157688,7 +151633,7 @@ Here we proposed two novel algorithms, the Direct Subsequence Dynamic Time Warpi
         "Wojciech Kasprzak" .
 
 <https://bio.tools/cynetsvm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3360 ;
@@ -157706,14 +151651,12 @@ Here we proposed two novel algorithms, the Direct Subsequence Dynamic Time Warpi
 
 <https://bio.tools/cyp11b1> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:name "Protein features" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:name "Protein features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_3510 ;
     sc:description "CYP11B1 mutation browser." ;
@@ -157724,14 +151667,12 @@ Here we proposed two novel algorithms, the Direct Subsequence Dynamic Time Warpi
 
 <https://bio.tools/cyp21> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:name "Protein features" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:name "Protein features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_3510 ;
     sc:description "CYP21 mutation browser." ;
@@ -157740,8 +151681,43 @@ Here we proposed two novel algorithms, the Direct Subsequence Dynamic Time Warpi
     sc:provider "bils.se" ;
     sc:url "http://www.bioinfo.ifm.liu.se/services/cyp21/" .
 
+<https://bio.tools/cypathia> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_3110" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Raw microarray data" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_0928" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Gene expression profile" ] ;
+    bsc:output [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:encodingFormat "http://edamontology.org/format_2013" ;
+            sc:name "Pathway or network" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2984" ;
+            sc:encodingFormat "http://edamontology.org/format_3166" ;
+            sc:name "Pathway or network report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Plug-in" ;
+    sc:applicationSubCategory edam:topic_0602,
+        edam:topic_0634 ;
+    sc:citation <https://doi.org/10.1016/j.csbj.2021.05.022>,
+        "pmcid:PMC8170118",
+        "pubmed:34136096" ;
+    sc:description "CyPathia is a cytoscape app, that provides a user friendly and straightforward interface. The CyPathia app is based on Hipathia Bioconductor package, allowing the Cytoscape community the possibility of using mechanistic models." ;
+    sc:featureList edam:operation_3927,
+        edam:operation_3928 ;
+    sc:isAccessibleForFree true ;
+    sc:name "CyPathia" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareVersion "1.0.0" ;
+    sc:url "https://apps.cytoscape.org/apps/cypathia" .
+
 <https://bio.tools/cypminer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0621,
@@ -157760,7 +151736,7 @@ Here we proposed two novel algorithms, the Direct Subsequence Dynamic Time Warpi
     sc:url "https://github.com/Okweon/CYPminer" .
 
 <https://bio.tools/cyproduct> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0821,
@@ -157778,7 +151754,7 @@ Here we proposed two novel algorithms, the Direct Subsequence Dynamic Time Warpi
     biotools:primaryContact <https://orcid.org/0000-0002-3207-2434> .
 
 <https://bio.tools/cyrest> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0769 ;
@@ -157797,7 +151773,7 @@ Here we proposed two novel algorithms, the Direct Subsequence Dynamic Time Warpi
     sc:url "http://apps.cytoscape.org/apps/cyrest" .
 
 <https://bio.tools/cyrface> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Plug-in" ;
     sc:applicationSubCategory edam:topic_0091,
@@ -157815,7 +151791,7 @@ Here we proposed two novel algorithms, the Direct Subsequence Dynamic Time Warpi
     sc:url "http://www.ebi.ac.uk/saezrodriguez/cyrface/" .
 
 <https://bio.tools/cyspanningtree> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3518 ;
@@ -157831,7 +151807,7 @@ Here we proposed two novel algorithms, the Direct Subsequence Dynamic Time Warpi
     sc:url "http://apps.cytoscape.org/apps/cyspanningtree" .
 
 <https://bio.tools/cystanalyser> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3300,
@@ -157849,7 +151825,7 @@ Here we proposed two novel algorithms, the Direct Subsequence Dynamic Time Warpi
     sc:url "https://citius.usc.es/transferencia/software/cystanalyser" .
 
 <https://bio.tools/cyto> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Script" ;
     sc:applicationSubCategory edam:topic_0108,
@@ -157867,7 +151843,7 @@ Here we proposed two novel algorithms, the Direct Subsequence Dynamic Time Warpi
     sc:url "https://bitbucket.org/anduril-dev/cyto/src" .
 
 <https://bio.tools/cyto-feature-engineering> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0804,
@@ -157885,7 +151861,7 @@ Here we proposed two novel algorithms, the Direct Subsequence Dynamic Time Warpi
     sc:url "https://github.com/aef1004/cyto-feature_engineering" .
 
 <https://bio.tools/cytoasp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0602,
@@ -157901,7 +151877,7 @@ Here we proposed two novel algorithms, the Direct Subsequence Dynamic Time Warpi
     biotools:primaryContact "Aristotelis Kittas" .
 
 <https://bio.tools/cytobrowser> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0605,
         edam:topic_2640,
@@ -157917,7 +151893,7 @@ Here we proposed two novel algorithms, the Direct Subsequence Dynamic Time Warpi
     biotools:primaryContact <https://orcid.org/0000-0001-7312-8222> .
 
 <https://bio.tools/cytocensus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2229,
         edam:topic_3064,
@@ -157935,7 +151911,7 @@ Here we proposed two novel algorithms, the Direct Subsequence Dynamic Time Warpi
     sc:url "http://github.com/hailstonem/CTC_CytoCensus" .
 
 <https://bio.tools/cytodx> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_2269,
@@ -157955,7 +151931,7 @@ Here we proposed two novel algorithms, the Direct Subsequence Dynamic Time Warpi
     biotools:primaryContact "Zicheng Hu" .
 
 <https://bio.tools/cytof> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0804,
         edam:topic_3325,
@@ -157979,18 +151955,18 @@ This GitHub repository contains a tutorial for creating deep learning models tai
 
 <https://bio.tools/cytofkit> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ] ;
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:encodingFormat "http://edamontology.org/format_2333" ;
+            sc:name "Mass spectrometry data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ],
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -158015,7 +151991,7 @@ This GitHub repository contains a tutorial for creating deep learning models tai
         "Jinmiao Chen" .
 
 <https://bio.tools/cytoglmm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0804,
@@ -158030,7 +152006,7 @@ This GitHub repository contains a tutorial for creating deep learning models tai
     sc:url "https://christofseiler.github.io/CytoGLMM/" .
 
 <https://bio.tools/cytokinelink> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0154,
         edam:topic_0804,
@@ -158045,7 +152021,7 @@ This GitHub repository contains a tutorial for creating deep learning models tai
     sc:url "https://github.com/korcsmarosgroup/CytokineLink" .
 
 <https://bio.tools/cytolib> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3307 ;
     sc:description "Core data structure and API to represent and interact with the gated cytometry data." ;
@@ -158062,7 +152038,7 @@ This GitHub repository contains a tutorial for creating deep learning models tai
     biotools:primaryContact "Mike Jiang" .
 
 <https://bio.tools/cytomap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_2229,
@@ -158082,7 +152058,7 @@ This GitHub repository contains a tutorial for creating deep learning models tai
     sc:url "https://gitlab.com/gernerlab/cytomap" .
 
 <https://bio.tools/cytomapper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3168,
@@ -158101,7 +152077,7 @@ This GitHub repository contains a tutorial for creating deep learning models tai
     sc:url "https://bodenmillergroup.github.io/cytomapper/" .
 
 <https://bio.tools/cytomegalovirusdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -158121,7 +152097,7 @@ This GitHub repository contains a tutorial for creating deep learning models tai
     sc:url "http://www.cmvdb.dqweilab-sjtu.com/index.php" .
 
 <https://bio.tools/cytoml> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0622 ;
@@ -158139,8 +152115,46 @@ This GitHub repository contains a tutorial for creating deep learning models tai
     sc:url "http://bioconductor.org/packages/release/bioc/html/CytoML.html" ;
     biotools:primaryContact "Mike Jiang" .
 
+<https://bio.tools/cytonet> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0625,
+        edam:topic_2229,
+        edam:topic_3315,
+        edam:topic_3382,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1371/JOURNAL.PCBI.1009846>,
+        "pmcid:PMC9191702",
+        "pubmed:35696439" ;
+    sc:description "cytoNet is a cloud-based image analysis software designed to quantify the structure of cell communities from microscope images using principles of graph theory." ;
+    sc:featureList edam:operation_3443,
+        edam:operation_3799,
+        edam:operation_3927 ;
+    sc:license "Not licensed" ;
+    sc:name "cytoNet" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://www.braininitiative.org/toolmakers/resources/cytonet/> ;
+    sc:url "http://sample-env-1.myiusswm4v.us-west-2.elasticbeanstalk.com/index2.html" .
+
+<https://bio.tools/cytopred> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:citation <https://doi.org/10.1093/protein/gzn006>,
+        "pubmed:18287174" ;
+    sc:description "A server to predict and classify cytokines." ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "Cytopred" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/cytopred/> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/cytopred/" .
+
 <https://bio.tools/cytopy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0769,
@@ -158158,7 +152172,7 @@ This GitHub repository contains a tutorial for creating deep learning models tai
     sc:url "https://github.com/burtonrj/CytoPy" .
 
 <https://bio.tools/cytosaddlesum> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_2259 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/bts041> ;
@@ -158173,7 +152187,7 @@ This GitHub repository contains a tutorial for creating deep learning models tai
     sc:url "http://www.ncbi.nlm.nih.gov/CBBresearch/Yu/mn/enrich/index.html" .
 
 <https://bio.tools/cytoscape> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0092,
@@ -158194,7 +152208,7 @@ This GitHub repository contains a tutorial for creating deep learning models tai
     sc:url "http://www.cytoscape.org/" .
 
 <https://bio.tools/cytoscape_web> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0128,
@@ -158216,7 +152230,7 @@ This GitHub repository contains a tutorial for creating deep learning models tai
     biotools:primaryContact "Gary D. Bader" .
 
 <https://bio.tools/cytoseg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0769,
@@ -158233,8 +152247,32 @@ This GitHub repository contains a tutorial for creating deep learning models tai
     sc:softwareVersion "2.0" ;
     sc:url "https://github.com/jnowak90/CytoSeg2.0" .
 
+<https://bio.tools/cytoself> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Script" ;
+    sc:applicationSubCategory edam:topic_0140,
+        edam:topic_2229,
+        edam:topic_3382,
+        edam:topic_3473,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1038/S41592-022-01541-Z>,
+        "pmcid:PMC9349041",
+        "pubmed:35879608" ;
+    sc:description "Self-supervised models for encoding protein localization patterns from microscopy images." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_2489,
+        edam:operation_3630,
+        edam:operation_3935 ;
+    sc:license "BSD-3-Clause" ;
+    sc:name "cytoself" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/royerlab/cytoself" .
+
 <https://bio.tools/cytoset> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3337,
         edam:topic_3379,
@@ -158247,8 +152285,32 @@ This GitHub repository contains a tutorial for creating deep learning models tai
     sc:url "https://github.com/CompCy-lab/cytoset" ;
     biotools:primaryContact "Natalie Stanley" .
 
+<https://bio.tools/cytosig> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0749,
+        edam:topic_3170,
+        edam:topic_3308,
+        edam:topic_3324,
+        edam:topic_3518 ;
+    sc:citation <https://doi.org/10.1038/S41592-021-01274-5>,
+        "pmcid:PMC8493809",
+        "pubmed:34594031" ;
+    sc:description "Systematic investigation of cytokine signaling activity at the tissue and single-cell levels." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_2436,
+        edam:operation_3431,
+        edam:operation_3659 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Other" ;
+    sc:name "CytoSig" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://cytosig.ccr.cancer.gov/" .
+
 <https://bio.tools/cytospill> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3168,
@@ -158263,7 +152325,7 @@ This GitHub repository contains a tutorial for creating deep learning models tai
     sc:url "https://github.com/KChen-lab/CytoSpill" .
 
 <https://bio.tools/cytotree> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_2229,
@@ -158285,7 +152347,7 @@ This GitHub repository contains a tutorial for creating deep learning models tai
     sc:url "https://ytdai.github.io/CytoTree/index.html" .
 
 <https://bio.tools/cyvcf2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -158303,7 +152365,7 @@ This GitHub repository contains a tutorial for creating deep learning models tai
         "Brent S Pedersen" .
 
 <https://bio.tools/czeum> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0114,
@@ -158320,8 +152382,23 @@ This GitHub repository contains a tutorial for creating deep learning models tai
     sc:name "CZEUM" ;
     sc:url "http://czeum.herb.lsa.umich.edu" .
 
+<https://bio.tools/d-bfa> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_2815,
+        edam:topic_3304 ;
+    sc:citation <https://doi.org/10.1093/CERCOR/BHAC293>,
+        "pubmed:35965076" ;
+    sc:description "A functional human brain atlas termed D-BFA (DFC-based Brain Functional Atlas)" ;
+    sc:featureList edam:operation_2429,
+        edam:operation_3432 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "D-BFA" ;
+    sc:url "https://github.com/sliderplm/D-BFA-618" .
+
 <https://bio.tools/d-cellerate> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3047 ;
     sc:description "D-cellerate is a web application that provides a graphical interface for Seurat version 2, a popular single-cell RNA-seq (scRNA-seq) package for R. It provides an easy-to-use UI and the ability to export results as an HTML file." ;
@@ -158334,14 +152411,14 @@ This GitHub repository contains a tutorial for creating deep learning models tai
 
 <https://bio.tools/d-ee> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3112" ;
-            sc:name "Gene expression matrix" ;
-            sc:sameAs "http://edamontology.org/data_3112" ] ;
+            sc:additionalType "http://edamontology.org/data_3112" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Gene expression matrix" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2012" ;
-            sc:name "Sequence coordinates" ;
-            sc:sameAs "http://edamontology.org/data_2012" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2012" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Sequence coordinates" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0091,
@@ -158357,7 +152434,7 @@ This GitHub repository contains a tutorial for creating deep learning models tai
     sc:url "https://github.com/ShaokunAn/D-EE" .
 
 <https://bio.tools/d-genies> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0092,
@@ -158375,7 +152452,7 @@ This GitHub repository contains a tutorial for creating deep learning models tai
     biotools:primaryContact "Christophe Klopp" .
 
 <https://bio.tools/d-mirt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0659,
@@ -158396,7 +152473,7 @@ This GitHub repository contains a tutorial for creating deep learning models tai
         "Xiaoman Li" .
 
 <https://bio.tools/d-omix> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0121,
@@ -158419,7 +152496,7 @@ This GitHub repository contains a tutorial for creating deep learning models tai
     sc:url "http://www.biotec.or.th/isl/Domix" .
 
 <https://bio.tools/d-pbwt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0625,
         edam:topic_3168 ;
@@ -158433,7 +152510,7 @@ This GitHub repository contains a tutorial for creating deep learning models tai
     sc:url "http://genome.ucf.edu/d-PBWT" .
 
 <https://bio.tools/d-peptide-builder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -158450,7 +152527,7 @@ Peptide-based drug discovery is re-gaining attention in drug discovery. Similarl
     sc:url "http://dpeptidebuilder.quimica.unam.mx:4000/" .
 
 <https://bio.tools/d-script> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0128,
@@ -158469,7 +152546,7 @@ Peptide-based drug discovery is re-gaining attention in drug discovery. Similarl
         <https://orcid.org/0000-0002-2724-7228> .
 
 <https://bio.tools/d-seams> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0176,
         edam:topic_3316,
@@ -158483,8 +152560,49 @@ Peptide-based drug discovery is re-gaining attention in drug discovery. Similarl
     sc:name "d-SEAMS" ;
     sc:url "https://dseams.info" .
 
+<https://bio.tools/d-structman> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:description "d-StructMAn is a new improved implementation of our earlier tool StructMAn, shipped in a convenient and easily installable container form and extended to annotation of short in-frame indels and alterations arising as a consequence of alternative splicing events. d-StructMAn produces a wide range of structural features by combining information from experimentally resolved structures of many related proteins, which is a unique feature of the StructMAn family tools. Additionally to information from experimentally resolved protein structures, d-StructMAn can also harness all protein structure models stored in the AlphaFold Protein Structure Database." ;
+    sc:name "d-StructMAn" ;
+    sc:url "https://github.com/kalininalab/d-StructMAn" .
+
+<https://bio.tools/d2-net> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_3444,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1109/TMI.2022.3175478>,
+        "pubmed:35576425" ;
+    sc:description "Dual Disentanglement Network (D2-Net) for brain tumor segmentation with missing modalities, which consists of a modality disentanglement stage (MD-Stage) and a tumor-region disentanglement stage (TDStage)." ;
+    sc:featureList edam:operation_3791 ;
+    sc:license "Apache-2.0" ;
+    sc:name "D2-Net" ;
+    sc:url "https://github.com/CityU-AIM-Group/D2Net" .
+
+<https://bio.tools/d3ai-cov> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0202,
+        edam:topic_0209,
+        edam:topic_2275,
+        edam:topic_3373 ;
+    sc:citation <https://doi.org/10.1093/BIB/BBAC147>,
+        "pubmed:35443040" ;
+    sc:description "A deep learning platform for predicting drug targets and for virtual screening against COVID-19." ;
+    sc:featureList edam:operation_2476,
+        edam:operation_2489,
+        edam:operation_3938 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "D3AI-CoV" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://www.d3pharma.com/D3Targets-2019-nCoV/D3AI-CoV/index.php" .
+
 <https://bio.tools/d3distalmutation> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0821,
@@ -158500,7 +152618,7 @@ In general, D3DistalMutation describes the effect of distal mutation (mutations
     sc:url "http://www.d3pharma.com/D3DistalMutation/index.php" .
 
 <https://bio.tools/d3pm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0154,
@@ -158517,7 +152635,7 @@ In general, D3DistalMutation describes the effect of distal mutation (mutations
     sc:url "http://www.d3pharma.com/D3PM/index.php" .
 
 <https://bio.tools/d3similarity> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0209,
@@ -158532,7 +152650,7 @@ In general, D3DistalMutation describes the effect of distal mutation (mutations
     sc:url "https://www.d3pharma.com/D3Targets-2019-nCoV/D3Similarity/index.php" .
 
 <https://bio.tools/d3targets-2019-ncov> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0209,
@@ -158551,7 +152669,7 @@ In general, D3DistalMutation describes the effect of distal mutation (mutations
     sc:url "https://www.d3pharma.com/D3Targets-2019-nCoV/index.php" .
 
 <https://bio.tools/d4> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0208,
@@ -158567,7 +152685,7 @@ In general, D3DistalMutation describes the effect of distal mutation (mutations
     sc:url "https://github.com/bio-ontology-research-group/D4" .
 
 <https://bio.tools/dHCP> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_3304,
         edam:topic_3384,
@@ -158581,49 +152699,8 @@ In general, D3DistalMutation describes the effect of distal mutation (mutations
     sc:name "dHCP" ;
     sc:url "https://git.fmrib.ox.ac.uk/seanf/dhcp-fmri-pipeline-release" .
 
-<https://bio.tools/dLight1> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0632,
-        edam:topic_3168,
-        edam:topic_3172,
-        edam:topic_3304,
-        edam:topic_3382 ;
-    sc:citation <https://doi.org/10.1038/S41596-019-0239-2>,
-        "pubmed:31732722" ;
-    sc:description """Imaging neuromodulators with high spatiotemporal resolution using genetically encoded indicators.
-
-Data/code file for Figure 3 and 4 (and relevant Supplementary Figures) in Patriarchi et al. Science 2018.
-
-FP_Session_Processing2.m: MATLAB code to load raw photometry data (recorded by TDT rigs, see methods in Patriarchi et al., Science 2018 and Cho et al., Neuron 2017) and process to calculate dF/F values.
-
-To download data and code to generate figures in MATLAB, please click the link below: https://www.dropbox.com/sh/ghpzchf1jmragrh/AADbFcWRtARsWrD-DbTJYQrZa?dl=0""" ;
-    sc:featureList edam:operation_0337,
-        edam:operation_3431,
-        edam:operation_3435 ;
-    sc:name "dLight1" ;
-    sc:url "http://github.com/GradinaruLab/dLight1" .
-
-<https://bio.tools/dLsd1> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0659,
-        edam:topic_0749,
-        edam:topic_0798,
-        edam:topic_3308,
-        edam:topic_3512 ;
-    sc:citation <https://doi.org/10.1093/NAR/GKZ1142>,
-        "pubmed:31799607" ;
-    sc:description """regulating developmental genes and repressing transposons.
-
-The histone demethylase LSD1 is a key chromatin regulator that is often deregulated in cancer. Its ortholog, dLsd1 plays a crucial role in Drosophila oogenesis; however, our knowledge of dLsd1 function is insufficient to explain its role in the ovary. Here, we have performed genome-wide analysis of dLsd1 binding in the ovary, and we document that dLsd1 is preferentially associated to the transcription start site of developmental genes. We uncovered an unanticipated interplay between dLsd1 and the GATA transcription factor Serpent and we report an unexpected role for Serpent in oogenesis. Besides, our transcriptomic data show that reducing dLsd1 levels results in ectopic transposable elements (TE) expression correlated with changes in H3K4me2 and H3K9me2 at TE loci.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'dual role dLsd1 oogenesis', 'oogenesis'""" ;
-    sc:featureList edam:operation_2495,
-        edam:operation_3222 ;
-    sc:name "dLsd1" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31799607" .
-
 <https://bio.tools/dNEMO> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3382,
         edam:topic_3512 ;
@@ -158642,51 +152719,8 @@ ABSTRACT Many biological processes are regulated by single molecules and molecul
         "Windows" ;
     sc:url "https://github.com/recleelab/dNEMO-0.9.0" .
 
-<https://bio.tools/dREG_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0621,
-        edam:topic_0749,
-        edam:topic_3316 ;
-    sc:citation <https://doi.org/10.1145/3219104.3219141>,
-        "pmcid:PMC6785190",
-        "pubmed:31598610" ;
-    sc:description """Building a Science Gateway For Processing and Modeling Sequencing Data Via Apache Airavata.
-
-Welcome to dREG and dTOX gateway!.
-
-The dREG model in the gateway predicts the location of enhancers and promoters using PRO-seq, GRO-seq, or ChRO-seq data. The server takes as input bigWig files provided by the user, which represent PRO-seq signal on the plus and minus strand. The gateway uses a pre-trained dREG model to identify divergent transcript start sites and impute the predicted DNase-I hypersensitivity signal across the genome. The current dREG model works in any mammalian organism.
-
-||| NAME (dREG) SIMILAR TO (PUB. DIFFERENT) bio.tools/dreg (dreg).
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'dREG gateway'""" ;
-    sc:featureList edam:operation_0440,
-        edam:operation_3222,
-        edam:operation_3557 ;
-    sc:name "dREG_autogenerated" ;
-    sc:url "https://dREG.dnasequence.org/" .
-
-<https://bio.tools/dSNE> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0102,
-        edam:topic_3304,
-        edam:topic_3325,
-        edam:topic_3384,
-        edam:topic_3474 ;
-    sc:citation <https://doi.org/10.1101/826974> ;
-    sc:description """a visualization approach for use with decentralized data.
-
-Abstract Visualization of high dimensional large-scale datasets via an embedding into a 2D map is a powerful exploration tool for assessing latent structure in the data and detecting outliers. It plays a vital role in neuroimaging field because sometimes it is the only way to perform quality control of large dataset. There are many methods developed to perform this task but most of them rely on the assumption that all samples are locally available for the computation. Specifically, one needs access to all the samples in order to compute the distance directly between all pairs of points to measure the similarity. But all pairs of samples may not be available locally always from local sites for various reasons (e.g. privacy concerns for rare disease data, institutional or IRB policies).
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'COIL-20'""" ;
-    sc:featureList edam:operation_0337,
-        edam:operation_2428,
-        edam:operation_3283,
-        edam:operation_3436 ;
-    sc:name "dSNE" ;
-    sc:url "https://doi.org/10.1101/826974" .
-
 <https://bio.tools/dSreg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0634,
@@ -158705,7 +152739,7 @@ MOTIVATION:Alternative splicing (AS) is an important mechanism in the generation
     sc:url "https://bitbucket.org/cmartiga/dsreg" .
 
 <https://bio.tools/dStruct> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0097,
@@ -158727,8 +152761,49 @@ MOTIVATION:Alternative splicing (AS) is an important mechanism in the generation
     biotools:primaryContact "Krishna Choudhary",
         "Sharon Aviran" .
 
+<https://bio.tools/dab-quant> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_2229,
+        edam:topic_3337,
+        edam:topic_3382 ;
+    sc:citation <https://doi.org/10.1371/JOURNAL.PONE.0271593>,
+        "pmcid:PMC9299305",
+        "pubmed:35857792" ;
+    sc:description "An open-source digital system for quantifying immunohistochemical staining with 3,3'-diaminobenzidine (DAB)." ;
+    sc:featureList edam:operation_3435,
+        edam:operation_3799 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "DAB-quant" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/sarafridov/DAB-quant" .
+
+<https://bio.tools/dacpgtn> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0202,
+        edam:topic_3067,
+        edam:topic_3336,
+        edam:topic_3373 ;
+    sc:citation <https://doi.org/10.3389/FPHAR.2022.907676>,
+        "pmcid:PMC9198367",
+        "pubmed:35721178" ;
+    sc:description "An end-to-end model DACPGTN for predicting ATC code for a given drug." ;
+    sc:featureList edam:operation_3891,
+        edam:operation_3927,
+        edam:operation_3935,
+        edam:operation_3938 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "DACPGTN" ;
+    sc:url "https://github.com/Szhgege/DACPGTN" .
+
 <https://bio.tools/dacsim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121 ;
     sc:citation <https://doi.org/10.1021/ac0491206> ;
@@ -158739,7 +152814,7 @@ MOTIVATION:Alternative splicing (AS) is an important mechanism in the generation
     biotools:primaryContact "Zhongqi Zhang" .
 
 <https://bio.tools/dact> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_2269,
@@ -158755,7 +152830,7 @@ MOTIVATION:Alternative splicing (AS) is an important mechanism in the generation
     sc:url "https://github.com/zhonghualiu/DACT" .
 
 <https://bio.tools/dad-is> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0625 ;
@@ -158770,16 +152845,19 @@ MOTIVATION:Alternative splicing (AS) is an important mechanism in the generation
     sc:url "http://www.fao.org/dad-is/en/" .
 
 <https://bio.tools/dada2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0199,
-        edam:topic_3168 ;
+        edam:topic_3168,
+        edam:topic_3174,
+        edam:topic_3697 ;
     sc:citation <https://doi.org/10.1038/nmeth.3869>,
         "pmcid:PMC4927377",
         "pubmed:27214047" ;
     sc:description "This package infers exact sequence variants (SVs) from amplicon data, replacing the commonly used and coarser OTU clustering approach. This pipeline inputs demultiplexed fastq files, and outputs the sequence variants and their sample-wise abundances after removing substitution and chimera errors. Taxonomic classification is available via a native implementation of the RDP naive Bayesian classifier." ;
-    sc:featureList edam:operation_3227 ;
+    sc:featureList edam:operation_3200,
+        edam:operation_3227 ;
     sc:license "GPL-3.0" ;
     sc:name "dada2" ;
     sc:operatingSystem "Linux",
@@ -158792,7 +152870,7 @@ MOTIVATION:Alternative splicing (AS) is an important mechanism in the generation
     biotools:primaryContact "Benjamin Callahan" .
 
 <https://bio.tools/dadaist2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:citation <https://doi.org/10.3390/ijms22105309>,
         "pmcid:PMC8157834",
         "pubmed:34069990" ;
@@ -158807,7 +152885,7 @@ MOTIVATION:Alternative splicing (AS) is an important mechanism in the generation
     sc:url "https://github.com/quadram-institute-bioscience/dadaist2" .
 
 <https://bio.tools/dadia> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_3172 ;
     sc:citation <https://doi.org/10.1021/ACS.ANALCHEM.0C05022>,
@@ -158822,8 +152900,21 @@ MOTIVATION:Alternative splicing (AS) is an important mechanism in the generation
     sc:url "https://github.com/HuanLab/DaDIA.git" ;
     biotools:primaryContact <https://orcid.org/0000-0001-6295-2435> .
 
+<https://bio.tools/dadpred> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:description "Prediction of drugs against aspartate semialdehyde dehydrogenase of dad pathways" ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "Dadpred" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/dadpred/home.html> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/dadpred/home.html" .
+
 <https://bio.tools/daei> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0602,
@@ -158839,7 +152930,7 @@ MOTIVATION:Alternative splicing (AS) is an important mechanism in the generation
     sc:url "https://github.com/XiuzeZhou/DAEi" .
 
 <https://bio.tools/dag> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_3384 ;
     sc:citation <https://doi.org/10.1109/TIP.2021.3049346>,
@@ -158850,7 +152941,7 @@ MOTIVATION:Alternative splicing (AS) is an important mechanism in the generation
     sc:url "https://github.com/sutd-visual-computing-group/dag-gans" .
 
 <https://bio.tools/dagbagm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0602,
@@ -158866,7 +152957,7 @@ MOTIVATION:Alternative splicing (AS) is an important mechanism in the generation
     sc:url "https://github.com/jie108/dagbagM" .
 
 <https://bio.tools/dagitty> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
@@ -158882,7 +152973,7 @@ MOTIVATION:Alternative splicing (AS) is an important mechanism in the generation
     sc:url "http://dagitty.net" .
 
 <https://bio.tools/daglogo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0080 ;
@@ -158900,17 +152991,53 @@ MOTIVATION:Alternative splicing (AS) is an important mechanism in the generation
     sc:url "https://bioconductor.org/packages/release/bioc/html/dagLogo.html" ;
     biotools:primaryContact "Jianhong Ou" .
 
+<https://bio.tools/daicee> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_0990" ;
+            sc:name "Compound name" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2301" ;
+            sc:name "SMILES string" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0091,
+        edam:topic_0154,
+        edam:topic_3336,
+        edam:topic_3375,
+        edam:topic_3379 ;
+    sc:citation <https://doi.org/10.6026/97320630016843>,
+        "pmcid:PMC8573451",
+        "pubmed:34803258" ;
+    sc:description "A database for anti-cancer compounds with targets and side effect profiles." ;
+    sc:featureList edam:operation_2421,
+        edam:operation_3938 ;
+    sc:isAccessibleForFree true ;
+    sc:name "DaiCee" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://www.hccbif.org/usersearch.php" .
+
 <https://bio.tools/dali> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
+        edam:topic_0084,
         edam:topic_0097,
+        edam:topic_0121,
+        edam:topic_0160,
+        edam:topic_0623,
         edam:topic_2814 ;
-    sc:citation "pubmed:20457744" ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAC387>,
+        "pmcid:PMC9252788",
+        "pubmed:20457744",
+        "pubmed:35610055" ;
     sc:description "The Dali server compares newly solved structures against structures in the PDB, allows browsing of pre-computed structural neighborhoods and generates suboptimal alignments from pairwise structure comparisons." ;
     sc:featureList edam:operation_0503,
         edam:operation_2483,
         edam:operation_2487 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
     sc:name "Dali" ;
     sc:operatingSystem "Linux",
         "Mac",
@@ -158921,14 +153048,12 @@ MOTIVATION:Alternative splicing (AS) is an important mechanism in the generation
 
 <https://bio.tools/dalilite> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ] ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:name "Protein structure" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1481" ;
-            sc:name "Structure alignment (protein)" ;
-            sc:sameAs "http://edamontology.org/data_1481" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1481" ;
+            sc:name "Structure alignment (protein)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_2814 ;
@@ -158950,7 +153075,7 @@ MOTIVATION:Alternative splicing (AS) is an important mechanism in the generation
     biotools:primaryContact "Web Production" .
 
 <https://bio.tools/dalton-project> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0593,
         edam:topic_3314,
@@ -158967,7 +153092,7 @@ MOTIVATION:Alternative splicing (AS) is an important mechanism in the generation
     sc:url "https://gitlab.com/daltonproject/daltonproject" .
 
 <https://bio.tools/dama> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3518 ;
@@ -158986,7 +153111,7 @@ MOTIVATION:Alternative splicing (AS) is an important mechanism in the generation
     biotools:primaryContact "Jobst Landgrebe" .
 
 <https://bio.tools/damage-net> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -159008,7 +153133,7 @@ MOTIVATION:Alternative splicing (AS) is an important mechanism in the generation
     sc:url "http://www.damage-net.co.uk" .
 
 <https://bio.tools/damageprofiler> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0654,
@@ -159025,7 +153150,7 @@ MOTIVATION:Alternative splicing (AS) is an important mechanism in the generation
     sc:url "https://github.com/Integrative-Transcriptomics/DamageProfiler" .
 
 <https://bio.tools/dambe> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0622,
@@ -159046,14 +153171,14 @@ MOTIVATION:Alternative splicing (AS) is an important mechanism in the generation
 
 <https://bio.tools/damidseq_pipeline> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0842" ;
-            sc:name "Identifier" ;
-            sc:sameAs "http://edamontology.org/data_0842" ] ;
+            sc:additionalType "http://edamontology.org/data_0842" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Identifier" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_3583" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0769,
@@ -159075,7 +153200,7 @@ MOTIVATION:Alternative splicing (AS) is an important mechanism in the generation
     biotools:primaryContact "Owen Marshall" .
 
 <https://bio.tools/damirseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3168,
@@ -159100,7 +153225,7 @@ them for both binary and multi-class classification purposes.""" ;
         "Mattia Chiesa" .
 
 <https://bio.tools/dammit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0625,
@@ -159121,7 +153246,7 @@ them for both binary and multi-class classification purposes.""" ;
     biotools:primaryContact "Camille Scott" .
 
 <https://bio.tools/dampd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0219,
@@ -159142,20 +153267,30 @@ them for both binary and multi-class classification purposes.""" ;
     sc:url "http://apps.sanbi.ac.za/dampd/" ;
     biotools:primaryContact "Vladimir B. Bajic" .
 
+<https://bio.tools/dampro> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:description "DAMpro is an in silico method, which is developed to predict Disease Associated Mutations." ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "DAMpro" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/dampro/index.php> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/dampro/index.php" .
+
 <https://bio.tools/dan> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2887" ;
-            sc:name "Nucleic acid sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2887" ] ;
+            sc:additionalType "http://edamontology.org/data_2887" ;
+            sc:name "Nucleic acid sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1583" ;
-            sc:name "Nucleic acid melting profile" ;
-            sc:sameAs "http://edamontology.org/data_1583" ],
+            sc:additionalType "http://edamontology.org/data_1583" ;
+            sc:name "Nucleic acid melting profile" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:name "Image" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0097 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -159185,7 +153320,7 @@ them for both binary and multi-class classification purposes.""" ;
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/dan.html" .
 
 <https://bio.tools/dancer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3067 ;
@@ -159198,7 +153333,7 @@ them for both binary and multi-class classification purposes.""" ;
     sc:url "http://ekhidna.biocenter.helsinki.fi/poxo/dancer" .
 
 <https://bio.tools/dangertrack> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
@@ -159212,8 +153347,33 @@ them for both binary and multi-class classification purposes.""" ;
     sc:name "DangerTrack" ;
     sc:url "https://github.com/DCGenomics/DangerTrack" .
 
+<https://bio.tools/danio-code> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0634,
+        edam:topic_0749,
+        edam:topic_3064,
+        edam:topic_3295,
+        edam:topic_3308 ;
+    sc:citation <https://doi.org/10.1038/S41588-022-01089-W>,
+        "pmcid:PMC9279159",
+        "pubmed:35789323" ;
+    sc:description "This Data Coordination Center web page allows DANIO-CODE consortium members to submit and view their data sets annotated with standard metadata nomenclatures." ;
+    sc:featureList edam:operation_0438,
+        edam:operation_2421,
+        edam:operation_3802,
+        edam:operation_3933 ;
+    sc:license "Other" ;
+    sc:name "DANIO-CODE" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://danio-code.zfin.org/help/#trackhub> ;
+    sc:url "https://danio-code.zfin.org" .
+
 <https://bio.tools/danpos> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654,
@@ -159232,7 +153392,7 @@ them for both binary and multi-class classification purposes.""" ;
     sc:url "https://sites.google.com/site/danposdoc/" .
 
 <https://bio.tools/dante> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -159247,7 +153407,7 @@ them for both binary and multi-class classification purposes.""" ;
     sc:url "http://omics.pnl.gov/software/DAnTE.php" .
 
 <https://bio.tools/dante_annotation> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0080 ;
@@ -159259,7 +153419,7 @@ them for both binary and multi-class classification purposes.""" ;
     sc:url "http://repeatexplorer.org/?page_id=832" .
 
 <https://bio.tools/dapar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0121 ;
@@ -159279,7 +153439,7 @@ them for both binary and multi-class classification purposes.""" ;
     biotools:primaryContact "Samuel Wieczorek" .
 
 <https://bio.tools/daphnia-stressor-database> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0625,
@@ -159295,7 +153455,7 @@ them for both binary and multi-class classification purposes.""" ;
     sc:url "http://www.daphnia-stressordb.uni-hamburg.de/dsdbstart.php" .
 
 <https://bio.tools/dapt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "A library enabling teams to distributed parameter sets between computational resources for faster parameter testing." ;
     sc:isAccessibleForFree true ;
     sc:license "BSD-3-Clause" ;
@@ -159307,7 +153467,7 @@ them for both binary and multi-class classification purposes.""" ;
     sc:url "https://github.com/BenSDuggan/DAPT" .
 
 <https://bio.tools/darc_site> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0611,
@@ -159328,7 +153488,7 @@ them for both binary and multi-class classification purposes.""" ;
     biotools:primaryContact "DARC site Support" .
 
 <https://bio.tools/dario> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_3168,
@@ -159350,15 +153510,35 @@ them for both binary and multi-class classification purposes.""" ;
     biotools:primaryContact "DARIO Support" .
 
 <https://bio.tools/dark_proteome_database> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:description "Mapping Darkness in the Protein Universe" ;
     sc:name "Dark Proteome Database" ;
     sc:softwareVersion "1.1" ;
     sc:url "http://no.url" .
 
+<https://bio.tools/darkcides> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_3050,
+        edam:topic_3071,
+        edam:topic_3500 ;
+    sc:citation <https://doi.org/10.1038/S41597-022-01234-4>,
+        "pmcid:PMC8983664",
+        "pubmed:35383183" ;
+    sc:description "A global database for bats in karsts and caves." ;
+    sc:featureList edam:operation_2421 ;
+    sc:isAccessibleForFree true ;
+    sc:license "CC-BY-4.0" ;
+    sc:name "DarkCideS" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://darkcides.org/" .
+
 <https://bio.tools/darkq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0622,
@@ -159372,8 +153552,30 @@ them for both binary and multi-class classification purposes.""" ;
     sc:name "DarkQ" ;
     sc:url "http://github.com/phiweger/darkq" .
 
+<https://bio.tools/darling> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0089,
+        edam:topic_0218,
+        edam:topic_0625,
+        edam:topic_0634,
+        edam:topic_3335 ;
+    sc:citation <https://doi.org/10.3390/BIOM12040520>,
+        "pmcid:PMC9028073",
+        "pubmed:35454109" ;
+    sc:description "Darling is a web application, which utilizes Name Entity Recognition to identify human-related biomedical terms in PubMed articles, mentioned in OMIM, DisGeNET and Human Phenotype Ontology (HPO) disease records, and generates an interactive biomedical entity association network." ;
+    sc:featureList edam:operation_2422,
+        edam:operation_3280,
+        edam:operation_3778 ;
+    sc:license "Not licensed" ;
+    sc:name "Darling" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://darling.pavlopouloslab.info" .
+
 <https://bio.tools/darn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0659,
@@ -159389,7 +153591,7 @@ them for both binary and multi-class classification purposes.""" ;
     sc:url "http://carlit.toulouse.inra.fr/Darn/" .
 
 <https://bio.tools/darq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3337,
         edam:topic_3384,
@@ -159405,7 +153607,7 @@ them for both binary and multi-class classification purposes.""" ;
     sc:url "https://github.com/vfonov/DARQ" .
 
 <https://bio.tools/dart> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203 ;
@@ -159425,7 +153627,7 @@ them for both binary and multi-class classification purposes.""" ;
     biotools:primaryContact "Charles Shijie Zheng" .
 
 <https://bio.tools/dart-ms> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0209,
@@ -159444,7 +153646,7 @@ them for both binary and multi-class classification purposes.""" ;
     sc:url "https://github.com/asm3-nist/DART-MS-DST" .
 
 <https://bio.tools/dart_mapper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0749,
@@ -159457,16 +153659,36 @@ them for both binary and multi-class classification purposes.""" ;
     sc:url "https://github.com/hsinnan75/DART" ;
     biotools:primaryContact "Wen-Lian Hsu" .
 
+<https://bio.tools/darts> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Workflow" ;
+    sc:applicationSubCategory edam:topic_0196,
+        edam:topic_0621,
+        edam:topic_0749,
+        edam:topic_0780,
+        edam:topic_3299 ;
+    sc:citation <https://doi.org/10.3390/GENES13010009>,
+        "pmcid:PMC8775202",
+        "pubmed:35052350" ;
+    sc:description "DARTS, Domain-Associated RetroTransposon Search, is a pipeline developed for searching, mining and annotation of LTR retrotransposons." ;
+    sc:featureList edam:operation_0303,
+        edam:operation_0525,
+        edam:operation_2421 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "DARTS" ;
+    sc:operatingSystem "Linux" ;
+    sc:url "https://github.com/Mikkey-the-turtle/DARTS_v0.1" .
+
 <https://bio.tools/das> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:name "Protein sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:name "Protein features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0736 ;
     sc:citation <https://doi.org/10.1093/protein/10.6.673> ;
@@ -159484,7 +153706,7 @@ them for both binary and multi-class classification purposes.""" ;
     sc:url "https://tmdas.bioinfo.se/DAS/index.html" .
 
 <https://bio.tools/das-tmfilter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0601,
@@ -159505,22 +153727,20 @@ them for both binary and multi-class classification purposes.""" ;
 
 <https://bio.tools/dasir> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2093" ;
-            sc:name "Data reference" ;
-            sc:sameAs "http://edamontology.org/data_2093" ],
+            sc:additionalType "http://edamontology.org/data_2093" ;
+            sc:name "Data reference" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0842" ;
-            sc:name "Identifier" ;
-            sc:sameAs "http://edamontology.org/data_0842" ] ;
+            sc:additionalType "http://edamontology.org/data_0842" ;
+            sc:name "Identifier" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2353" ;
-            sc:name "Ontology data" ;
-            sc:sameAs "http://edamontology.org/data_2353" ],
+            sc:additionalType "http://edamontology.org/data_2353" ;
+            sc:encodingFormat "http://edamontology.org/format_3617" ;
+            sc:name "Ontology data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2080" ;
-            sc:name "Database search results" ;
-            sc:sameAs "http://edamontology.org/data_2080" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2080" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Database search results" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Plug-in" ;
     sc:applicationSubCategory edam:topic_3316 ;
@@ -159543,7 +153763,7 @@ them for both binary and multi-class classification purposes.""" ;
     biotools:primaryContact "Ricard Illa" .
 
 <https://bio.tools/dasmiweb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0128,
@@ -159563,8 +153783,25 @@ them for both binary and multi-class classification purposes.""" ;
     sc:url "http://www.dasmiweb.de" ;
     biotools:primaryContact "DASMI" .
 
+<https://bio.tools/dastool> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_3174 ;
+    sc:citation <https://doi.org/10.1038/s41564-018-0171-1>,
+        "pmcid:PMC6786971",
+        "pubmed:29807988" ;
+    sc:description "DAS Tool is an automated method that integrates the results of a flexible number of binning algorithms to calculate an optimized, non-redundant set of bins from a single assembly." ;
+    sc:featureList edam:operation_3798 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "dastool" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/cmks/DAS_Tool" .
+
 <https://bio.tools/dasty> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0160 ;
@@ -159588,14 +153825,14 @@ them for both binary and multi-class classification purposes.""" ;
 
 <https://bio.tools/dat2mgf> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ] ;
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_3713" ;
+            sc:name "Peptide identification" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_3651" ;
+            sc:name "Peptide identification" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -159608,7 +153845,7 @@ them for both binary and multi-class classification purposes.""" ;
     sc:url "http://www.ce4csb.org/software.shtml" .
 
 <https://bio.tools/data-Mining-pubmed> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0218,
         edam:topic_2640,
@@ -159628,32 +153865,8 @@ them for both binary and multi-class classification purposes.""" ;
     sc:url "https://www.mathworks.com/matlabcentral/fileexchange/67939-data-mining-and-visualisation-of-pubmed" ;
     biotools:primaryContact <https://orcid.org/0000-0002-9466-2018> .
 
-<https://bio.tools/data-driven_materials_science> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0593,
-        edam:topic_3314,
-        edam:topic_3318,
-        edam:topic_3474,
-        edam:topic_3489 ;
-    sc:citation <https://doi.org/10.1002/ADVS.201900808>,
-        "pmcid:PMC6839624",
-        "pubmed:31728276" ;
-    sc:description """Status, Challenges, and Perspectives.
-
-SpringerMaterials – properties of materials.
-
-SpringerMaterials: search, manipulate, and export data in materials science, physics, chemistry, and engineering.
-
-We use cookies to ensure the functionality of our website, to personalize content and advertising, to provide social media features, and to analyze our traffic. If you allow us to do so, we also inform our social media, advertising and analysis partners about your use of our website. You can decide for yourself which categories you want to deny or allow. Please note that based on your settings not all functionalities of the site are available. Further information can be found in our Privacy Policy .
-
-SpringerMaterials celebrates the 2019 Nobel Prize in Chemistry winners""" ;
-    sc:featureList edam:operation_3096,
-        edam:operation_3431,
-        edam:operation_3454 ;
-    sc:name "data-driven materials science" ;
-    sc:url "http://materials.springer.com" .
-
 <https://bio.tools/data-processing-modeling-nir-data> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:description "A guide of data processing in NIR application for modeling" ;
     sc:featureList edam:operation_3936 ;
@@ -159666,57 +153879,16 @@ SpringerMaterials celebrates the 2019 Nobel Prize in Chemistry winners""" ;
     sc:url "https://www.mathworks.com/matlabcentral/fileexchange/48493-data-processing-for-modeling-with-the-nir-data" ;
     biotools:primaryContact "Yonghuan Yun" .
 
-<https://bio.tools/data_algorithm> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0203,
-        edam:topic_0632,
-        edam:topic_3314,
-        edam:topic_3382,
-        edam:topic_3512 ;
-    sc:citation <https://doi.org/10.1101/825869> ;
-    sc:description """Stochastic simulation platform for visualization and estimation of transcriptional kinetics.
-
-Gorin, Gennady Caltech 0000-0001-6097-2029 ORCID.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'data'""" ;
-    sc:featureList edam:operation_0337,
-        edam:operation_2426,
-        edam:operation_3799 ;
-    sc:name "data algorithm" ;
-    sc:url "https://data.caltech.edu/records/1287" .
-
-<https://bio.tools/data_article> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3050,
-        edam:topic_3390,
-        edam:topic_3810 ;
-    sc:citation <https://doi.org/10.1016/J.DIB.2019.104204>,
-        "pmcid:PMC6685674",
-        "pubmed:31406900" ;
-    sc:description "> LOW CONFIDENCE! | > COMMON LINK WITH (PUB. & NAME DIFFERENT) bio.tools/pappso (INRA.FR), bio.tools/phyleasprog (INRA.FR), bio.tools/lepidodb (INRA.FR), bio.tools/the_genetic_map_comparator (INRA.FR) | > CORRECT NAME OF TOOL COULD ALSO BE 'data', 'institut' | Annotation data about multi criteria assessment methods used in the agri-food research | L'actuelle version du portail Data Inra est basée sur la version 4.10.1 de Dataverse. Découvrez les nouvelles fonctionnalités proposées dans Data Inra | Share this dataverse on your favorite social media networks" ;
-    sc:featureList edam:operation_0305,
-        edam:operation_3436 ;
-    sc:name "data article" ;
-    sc:url "https://data.inra.fr/" .
-
-<https://bio.tools/data_self-injurious> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3399,
-        edam:topic_3418,
-        edam:topic_3419 ;
-    sc:citation <https://doi.org/10.1590/1516-4446-2018-0355>,
-        "pubmed:31389497" ;
-    sc:description "> LOW CONFIDENCE! | Self-injurious behavior and related mortality in children under 10 years of age | The requested URL was rejected. Please consult with your administrator | Your support ID is: 15055451159810011898 | Plano Diretor de Tecnologia da Informação do Ministério da Saúde, biênio 2017-2018, foi publicada no Diário Oficial da União | Software de gestão hospitalar completo, desenvolvido em tecnologia web que substitui o sistema HOSPUB" ;
-    sc:name "data self-injurious" ;
-    sc:url "http://datasus.saude.gov.br/" .
-
 <https://bio.tools/dataanalysis2tpp> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ] ;
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_3651" ;
+            sc:name "Peptide identification" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_3651" ;
+            sc:name "Peptide identification" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -159731,7 +153903,7 @@ Gorin, Gennady Caltech 0000-0001-6097-2029 ORCID.
     sc:url "http://www.ms-utils.org/DataAnalysis2TPP.html" .
 
 <https://bio.tools/database_for_bacterial_group_2_introns> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0623,
@@ -159753,34 +153925,34 @@ Gorin, Gennady Caltech 0000-0001-6097-2029 ORCID.
 
 <https://bio.tools/database_manager> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0957" ;
-            sc:name "Database metadata" ;
-            sc:sameAs "http://edamontology.org/data_0957" ],
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "DNA sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3494" ;
-            sc:name "DNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3494" ],
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "DNA sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3494" ;
-            sc:name "DNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3494" ] ;
+            sc:additionalType "http://edamontology.org/data_0957" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Database metadata" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1674" ;
-            sc:name "Sequence database cross-references" ;
-            sc:sameAs "http://edamontology.org/data_1674" ],
+            sc:additionalType "http://edamontology.org/data_1057" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence database name" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0957" ;
-            sc:name "Database metadata" ;
-            sc:sameAs "http://edamontology.org/data_0957" ],
+            sc:additionalType "http://edamontology.org/data_0957" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Database metadata" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1057" ;
-            sc:name "Sequence database name" ;
-            sc:sameAs "http://edamontology.org/data_1057" ],
+            sc:additionalType "http://edamontology.org/data_1674" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence database cross-references" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0581" ;
-            sc:name "Database" ;
-            sc:sameAs "http://edamontology.org/data_0581" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0581" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Database" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -159797,8 +153969,58 @@ Gorin, Gennady Caltech 0000-0001-6097-2029 ORCID.
     sc:softwareHelp <http://pappso.inra.fr/bioinfo/pdm/> ;
     sc:url "http://pappso.inra.fr/bioinfo/pdm/" .
 
+<https://bio.tools/datac> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2337" ;
+            sc:name "Resource metadata" ] ;
+    bsc:output [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_0950" ;
+            sc:name "Mathematical model" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_3905" ;
+            sc:name "Histogram" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_3305 ;
+    sc:citation <https://doi.org/10.1016/j.scitotenv.2020.141424>,
+        "pmcid:PMC7399783",
+        "pubmed:32853931" ;
+    sc:description "DatAC (Data Against COVID-19), a data fusion project with an interactive web frontend that integrates COVID-19 and environmental data in Spain. DatAC is provided with powerful data analysis and statistical capabilities that allow users to explore and analyze individual trends and associations among the provided data." ;
+    sc:featureList edam:operation_3436,
+        edam:operation_3659 ;
+    sc:isAccessibleForFree true ;
+    sc:name "DatAC" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://covid19.genyo.es" .
+
+<https://bio.tools/datacleanr> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0610,
+        edam:topic_0769,
+        edam:topic_3372,
+        edam:topic_3572 ;
+    sc:citation <https://doi.org/10.1371/JOURNAL.PONE.0268426>,
+        "pmcid:PMC9098071",
+        "pubmed:35551557" ;
+    sc:description "datacleanr is a flexible and efficient tool for interactive data cleaning, and is inherently interoperable, as it seamlessly integrates into reproducible data analyses pipelines in R." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_2428,
+        edam:operation_3695 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "datacleanr" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://github.com/the-Hull/datacleanr/blob/master/.github/CODE_OF_CONDUCT.md> ;
+    sc:url "http://www.github.com/the-hull/datacleanr" .
+
 <https://bio.tools/datacube_explorer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3383,
@@ -159815,7 +154037,7 @@ Gorin, Gennady Caltech 0000-0001-6097-2029 ORCID.
     sc:url "http://www.amolf.nl/download/datacubeexplorer/" .
 
 <https://bio.tools/datajoint> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0769,
@@ -159834,7 +154056,7 @@ This resource ("Resource") provides an efficient approach for neuroscience labs
     biotools:primaryContact <https://orcid.org/0000-0002-1844-641X> .
 
 <https://bio.tools/dataman> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3489,
         edam:topic_3810 ;
@@ -159847,7 +154069,7 @@ This resource ("Resource") provides an efficient approach for neuroscience labs
     sc:url "http://www.dataman.co.nz" .
 
 <https://bio.tools/datanator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web API" ;
     sc:applicationSubCategory edam:topic_0091,
@@ -159873,26 +154095,8 @@ This resource ("Resource") provides an efficient approach for neuroscience labs
     sc:url "https://www.datanator.info" ;
     biotools:primaryContact <https://orcid.org/0000-0002-2605-5080> .
 
-<https://bio.tools/dataportal> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_2640,
-        edam:topic_3077,
-        edam:topic_3678 ;
-    sc:citation <https://doi.org/10.1016/J.DIB.2019.104452>,
-        "pmcid:PMC6811878",
-        "pubmed:31667224" ;
-    sc:description """Dataset on discarded cigarette packs in Mongolia.
-
-Mongolia Illicit Cigarette Data 2017-2018.
-
-Research on the Economics of Excisable Products - University of Cape Town.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'Tobacco Control'""" ;
-    sc:featureList edam:operation_3096 ;
-    sc:name "dataportal" ;
-    sc:url "https://www.datafirst.uct.ac.za/dataportal/index.php/catalog/772" .
-
 <https://bio.tools/dataremix> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -159909,7 +154113,7 @@ Research on the Economics of Excisable Products - University of Cape Town.
     sc:url "https://github.com/wgmao/DataRemix" .
 
 <https://bio.tools/datasets2tools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web API" ;
     sc:applicationSubCategory edam:topic_0091,
@@ -159929,7 +154133,7 @@ Research on the Economics of Excisable Products - University of Cape Town.
     biotools:primaryContact "Avi Ma’ayan" .
 
 <https://bio.tools/datashield> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3263,
         edam:topic_3305,
@@ -159952,7 +154156,7 @@ A place for DataSHIELD contributors and users to have discussions.
     sc:url "https://datashield.discourse.group/" .
 
 <https://bio.tools/datasplitind> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -159969,7 +154173,7 @@ A place for DataSHIELD contributors and users to have discussions.
     biotools:primaryContact "Vahe Tshitoyan" .
 
 <https://bio.tools/dataup> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in",
         "Web application" ;
     sc:applicationSubCategory edam:topic_3071 ;
@@ -159988,7 +154192,7 @@ A place for DataSHIELD contributors and users to have discussions.
     sc:url "https://zenodo.org/record/7639#.W45ZrC0rzfZ" .
 
 <https://bio.tools/datelife> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0194,
@@ -160016,7 +154220,7 @@ Code coverage done right""" ;
     sc:url "http://www.datelife.org/" .
 
 <https://bio.tools/datf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0623,
@@ -160037,7 +154241,7 @@ Code coverage done right""" ;
     biotools:primaryContact "ATRM Support" .
 
 <https://bio.tools/datma> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0196,
@@ -160057,7 +154261,7 @@ Code coverage done right""" ;
     sc:url "https://github.com/andvides/DATMA" .
 
 <https://bio.tools/datumkb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0602,
@@ -160076,7 +154280,7 @@ Code coverage done right""" ;
     sc:url "https://datum.csl.sri.com" .
 
 <https://bio.tools/davi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0736,
@@ -160093,7 +154297,7 @@ Code coverage done right""" ;
     sc:url "http://genome.lcqb.upmc.fr/Domain-Architecture-Viewer" .
 
 <https://bio.tools/david_bioinformatics_resources> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0602,
@@ -160115,7 +154319,7 @@ Code coverage done right""" ;
     biotools:primaryContact "DAVID Bioinformatic Team" .
 
 <https://bio.tools/david_ws> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/bts251> ;
@@ -160131,26 +154335,21 @@ Code coverage done right""" ;
 
 <https://bio.tools/davidquery> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0842" ;
-            sc:name "Identifier" ;
-            sc:sameAs "http://edamontology.org/data_0842" ],
+            sc:additionalType "http://edamontology.org/data_0842" ;
+            sc:name "Identifier" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2093" ;
-            sc:name "Data reference" ;
-            sc:sameAs "http://edamontology.org/data_2093" ] ;
+            sc:additionalType "http://edamontology.org/data_2093" ;
+            sc:name "Data reference" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2353" ;
-            sc:name "Ontology data" ;
-            sc:sameAs "http://edamontology.org/data_2353" ],
+            sc:additionalType "http://edamontology.org/data_0950" ;
+            sc:name "Mathematical model" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0950" ;
-            sc:name "Mathematical model" ;
-            sc:sameAs "http://edamontology.org/data_0950" ],
+            sc:additionalType "http://edamontology.org/data_2353" ;
+            sc:name "Ontology data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2080" ;
-            sc:name "Database search results" ;
-            sc:sameAs "http://edamontology.org/data_2080" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2080" ;
+            sc:name "Database search results" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Plug-in" ;
     sc:applicationSubCategory edam:topic_3071,
@@ -160173,8 +154372,29 @@ Code coverage done right""" ;
     sc:url "http://www.bioconductor.org/packages//2.13/bioc/html/DAVIDQuery.html" ;
     biotools:primaryContact "Roger Day" .
 
+<https://bio.tools/dax> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Library" ;
+    sc:applicationSubCategory edam:topic_0769,
+        edam:topic_3316,
+        edam:topic_3384,
+        edam:topic_3398 ;
+    sc:citation <https://doi.org/10.1007/S10278-022-00679-8>,
+        "pubmed:35922700" ;
+    sc:description "Distributed automation for XNAT toolkit (DAX) provides large-scale image storage and analysis pipelines with an optimized job management tool for neuroimaging data" ;
+    sc:featureList edam:operation_3443 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "DAX" ;
+    sc:operatingSystem "Linux",
+        "Mac" ;
+    sc:softwareHelp <https://dax.readthedocs.io/en/latest/?badge=latest>,
+        <https://github.com/VUIIS/dax_yaml_processor_examples> ;
+    sc:url "https://github.com/VUIIS/dax" .
+
 <https://bio.tools/dbInDel> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_2640,
@@ -160193,22 +154413,8 @@ Cancer hallmarks rely on its specific transcriptional programs, which are dysreg
     sc:name "dbInDel" ;
     sc:url "http://enhancer-indel.cam-su.org/" .
 
-<https://bio.tools/dbMDEGA> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0602,
-        edam:topic_2885,
-        edam:topic_3517 ;
-    sc:citation <https://doi.org/10.3389/FGENE.2019.00733>,
-        "pmcid:PMC6696953",
-        "pubmed:31447886" ;
-    sc:description "> LOW CONFIDENCE! | > CORRECT NAME OF TOOL COULD ALSO BE 'GBA', 'PASCAL', 'Novel Gene-Based Analysis ASD GWAS', 'ASD-associated' | Insight Into the Biological Role of Associated Genes | Background: Autism spectrum disorder (ASD) is a neurodevelopmental disorder characterized by its significant social impact and high heritability. The latest meta-analysis of ASD GWAS (genome-wide association studies) has revealed the association of several SNPs that were replicated in additional sets of independent samples. However, summary statistics from GWAS can be used to perform a gene-based analysis (GBA). GBA allows to combine all genetic information across the gene to create a single statistic (p-value for each gene). Thus, PASCAL (Pathway scoring algorithm), a novel GBA tool, has been applied to the summary statistics from the latest meta-analysis of ASD. GBA approach (testing the gene as a unit) provides an advantage to perform an accurate insight into the biological ASD mechanisms" ;
-    sc:featureList edam:operation_3196,
-        edam:operation_3501,
-        edam:operation_3557 ;
-    sc:name "dbMDEGA" ;
-    sc:url "https://dbmdega.shinyapps.io/dbMDEGA/" .
-
 <https://bio.tools/dbMMR-Chinese> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0634,
@@ -160229,7 +154435,7 @@ DNA mismatch repair (MMR) genes play an important role in maintaining genomic st
     biotools:primaryContact <https://orcid.org/0000-0002-2172-1320> .
 
 <https://bio.tools/dbaasp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0621,
@@ -160246,8 +154452,35 @@ DNA mismatch repair (MMR) genes play an important role in maintaining genomic st
     sc:softwareVersion "3" ;
     sc:url "http://dbaasp.org" .
 
+<https://bio.tools/dbamp> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Bioinformatics portal",
+        "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0080,
+        edam:topic_0121,
+        edam:topic_0154,
+        edam:topic_3168,
+        edam:topic_3301 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAB1080>,
+        "pmcid:PMC8690246",
+        "pubmed:34850155" ;
+    sc:description "DBAMP 2.0: updated resource for antimicrobial peptides with an enhanced scanning method on genomic and proteomic data." ;
+    sc:featureList edam:operation_0418,
+        edam:operation_0476,
+        edam:operation_2421,
+        edam:operation_3461,
+        edam:operation_4009 ;
+    sc:isAccessibleForFree true ;
+    sc:name "dbAMP" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareVersion "2.0" ;
+    sc:url "http://awi.cuhk.edu.cn/dbAMP" .
+
 <https://bio.tools/dbass> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0621,
@@ -160269,8 +154502,32 @@ DNA mismatch repair (MMR) genes play an important role in maintaining genomic st
     biotools:primaryContact "DBASS3 Support",
         "DBASS5 Support" .
 
+<https://bio.tools/dbbip> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_2885,
+        edam:topic_3419,
+        edam:topic_3473,
+        edam:topic_3517 ;
+    sc:citation <https://doi.org/10.1093/DATABASE/BAAC049>,
+        "pmcid:PMC9250320",
+        "pubmed:35779245" ;
+    sc:description "A comprehensive bipolar disorder database for genetic research." ;
+    sc:featureList edam:operation_2421,
+        edam:operation_3227,
+        edam:operation_3791 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "dbBIP" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://dbbip.xialab.info" .
+
 <https://bio.tools/dbbqs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_3071,
         edam:topic_3339,
@@ -160287,7 +154544,7 @@ DNA mismatch repair (MMR) genes play an important role in maintaining genomic st
     biotools:primaryContact "Visanu Wanchai" .
 
 <https://bio.tools/dbcan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0152,
         edam:topic_0160,
@@ -160310,7 +154567,7 @@ DNA mismatch repair (MMR) genes play an important role in maintaining genomic st
     biotools:primaryContact "Ying Xu" .
 
 <https://bio.tools/dbcan-pul> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0152,
         edam:topic_0154,
@@ -160327,7 +154584,7 @@ DNA mismatch repair (MMR) genes play an important role in maintaining genomic st
     sc:url "http://bcb.unl.edu/dbCAN_PUL/" .
 
 <https://bio.tools/dbcan2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0152,
         edam:topic_0160,
@@ -160342,7 +154599,7 @@ DNA mismatch repair (MMR) genes play an important role in maintaining genomic st
     biotools:primaryContact "Yanbin Yin" .
 
 <https://bio.tools/dbchip> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0749,
@@ -160361,7 +154618,7 @@ DNA mismatch repair (MMR) genes play an important role in maintaining genomic st
     biotools:primaryContact "Kun Liang" .
 
 <https://bio.tools/dbcns> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0621,
@@ -160378,7 +154635,7 @@ DNA mismatch repair (MMR) genes play an important role in maintaining genomic st
     sc:url "http://yamasati.nig.ac.jp/dbcns" .
 
 <https://bio.tools/dbcovp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_2275,
         edam:topic_2830,
@@ -160397,7 +154654,7 @@ DNA mismatch repair (MMR) genes play an important role in maintaining genomic st
     sc:url "http://covp.immt.res.in/" .
 
 <https://bio.tools/dbcp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0130,
@@ -160413,7 +154670,7 @@ DNA mismatch repair (MMR) genes play an important role in maintaining genomic st
     sc:url "http://120.107.8.16/dbcp" .
 
 <https://bio.tools/dbcrid> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0634,
@@ -160430,14 +154687,13 @@ DNA mismatch repair (MMR) genes play an important role in maintaining genomic st
 
 <https://bio.tools/dbd> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2716" ;
-            sc:name "DBD ID" ;
-            sc:sameAs "http://edamontology.org/data_2716" ] ;
+            sc:additionalType "http://edamontology.org/data_2716" ;
+            sc:name "DBD ID" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0896" ;
-            sc:name "Protein report" ;
-            sc:sameAs "http://edamontology.org/data_0896" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0896" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Protein report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0749 ;
     sc:citation <https://doi.org/10.1093/nar/gkm964> ;
@@ -160452,7 +154708,7 @@ DNA mismatch repair (MMR) genes play an important role in maintaining genomic st
     biotools:primaryContact "Sarah A. Teichmann" .
 
 <https://bio.tools/dbd2bs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0654,
@@ -160467,7 +154723,7 @@ DNA mismatch repair (MMR) genes play an important role in maintaining genomic st
     biotools:primaryContact "Support Forum" .
 
 <https://bio.tools/dbdepc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0203,
@@ -160486,7 +154742,7 @@ DNA mismatch repair (MMR) genes play an important role in maintaining genomic st
     biotools:primaryContact "dbdepc Support" .
 
 <https://bio.tools/dbdnv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0749,
@@ -160507,88 +154763,128 @@ DNA mismatch repair (MMR) genes play an important role in maintaining genomic st
     biotools:primaryContact "Mirrian Meng-Ru Ho",
         "Wen-chang Lin" .
 
+<https://bio.tools/dbembryo> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0204,
+        edam:topic_0749,
+        edam:topic_3169,
+        edam:topic_3295,
+        edam:topic_3940 ;
+    sc:citation <https://doi.org/10.1101/GR.276744.122>,
+        "pmcid:PMC9435744",
+        "pubmed:35977841" ;
+    sc:description "A dbEmbryo multi-omics database for analyses of synergistic regulation in early mammalian embryo development." ;
+    sc:featureList edam:operation_0313,
+        edam:operation_0314,
+        edam:operation_2422 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "dbEmbryo" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://sysomics.com/dbEmbryo/basicspace/about> ;
+    sc:url "https://sysomics.com/dbEmbryo/" .
+
+<https://bio.tools/dbesslnc> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0219,
+        edam:topic_0659,
+        edam:topic_2640,
+        edam:topic_3068 ;
+    sc:citation <https://doi.org/10.1016/J.CSBJ.2022.05.043>,
+        "pmcid:PMC9162909",
+        "pubmed:35685362" ;
+    sc:description "A manually curated database of human and mouse essential lncRNA genes." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_2421,
+        edam:operation_3431,
+        edam:operation_3891 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "dbEssLnc" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://esslnc.pufengdu.org" .
+
 <https://bio.tools/dbest> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1105" ;
-            sc:name "dbEST accession" ;
-            sc:sameAs "http://edamontology.org/data_1105" ],
+            sc:additionalType "http://edamontology.org/data_1105" ;
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-            sc:identifier "http://edamontology.org/data_2314" ;
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-            sc:sameAs "http://edamontology.org/data_2314" ],
+            sc:additionalType "http://edamontology.org/data_1105" ;
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-            sc:identifier "http://edamontology.org/data_2314" ;
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+            sc:name "dbEST accession" ],
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-            sc:name "dbEST accession" ;
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-            sc:identifier "http://edamontology.org/data_2314" ;
-            sc:name "GI number" ;
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+            sc:additionalType "http://edamontology.org/data_2314" ;
+            sc:name "GI number" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ],
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
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+            sc:additionalType "http://edamontology.org/data_0849" ;
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         [ a bsct:FormalParameter ;
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+            sc:additionalType "http://edamontology.org/data_0849" ;
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-            sc:name "Sequence record" ;
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+            sc:additionalType "http://edamontology.org/data_0849" ;
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-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
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+            sc:additionalType "http://edamontology.org/data_0849" ;
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         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
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-            sc:sameAs "http://edamontology.org/data_0849" ],
+            sc:additionalType "http://edamontology.org/data_0849" ;
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-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ],
+            sc:additionalType "http://edamontology.org/data_0849" ;
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-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ],
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:encodingFormat "http://edamontology.org/format_2532" ;
+            sc:name "Sequence record" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Sequence record" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_3512 ;
     sc:citation "pubmed:8401577" ;
@@ -160603,7 +154899,7 @@ DNA mismatch repair (MMR) genes play an important role in maintaining genomic st
     sc:url "http://www.ncbi.nlm.nih.gov/dbEST/" .
 
 <https://bio.tools/dbeth> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0602,
@@ -160625,8 +154921,26 @@ DNA mismatch repair (MMR) genes play an important role in maintaining genomic st
     sc:url "http://www.hpppi.iicb.res.in/btox/" ;
     biotools:primaryContact "Saikat Chakrabarti" .
 
+<https://bio.tools/dbfe> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library",
+        "Script" ;
+    sc:applicationSubCategory edam:topic_2640,
+        edam:topic_3360,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC513>,
+        "pubmed:35929780" ;
+    sc:description "DBFE is a Python library with feature extraction methods that facilitate classifier learning from distributions of genomic variants." ;
+    sc:featureList edam:operation_3937 ;
+    sc:license "BSD-3-Clause" ;
+    sc:name "DBFE" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/MNMdiagnostics/dbfe" .
+
 <https://bio.tools/dbfetch> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1093/nar/gki491> ;
@@ -160641,7 +154955,7 @@ DNA mismatch repair (MMR) genes play an important role in maintaining genomic st
     sc:url "http://www.ebi.ac.uk/Tools/dbfetch/" .
 
 <https://bio.tools/dbgap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0625,
@@ -160665,7 +154979,7 @@ DNA mismatch repair (MMR) genes play an important role in maintaining genomic st
     biotools:primaryContact "Michael Feolo" .
 
 <https://bio.tools/dbgap2x> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3335,
@@ -160679,7 +154993,7 @@ DNA mismatch repair (MMR) genes play an important role in maintaining genomic st
     sc:url "https://github.com/gversmee/dbgap2x" .
 
 <https://bio.tools/dbgenvoc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0622,
@@ -160701,7 +155015,7 @@ DNA mismatch repair (MMR) genes play an important role in maintaining genomic st
     biotools:primaryContact <https://orcid.org/0000-0001-7960-3290> .
 
 <https://bio.tools/dbiblast> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -160731,7 +155045,7 @@ DNA mismatch repair (MMR) genes play an important role in maintaining genomic st
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/dbiblast.html" .
 
 <https://bio.tools/dbifasta> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -160761,7 +155075,7 @@ DNA mismatch repair (MMR) genes play an important role in maintaining genomic st
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/dbifasta.html" .
 
 <https://bio.tools/dbiflat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -160791,7 +155105,7 @@ DNA mismatch repair (MMR) genes play an important role in maintaining genomic st
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/dbiflat.html" .
 
 <https://bio.tools/dbigcg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -160821,7 +155135,7 @@ DNA mismatch repair (MMR) genes play an important role in maintaining genomic st
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/dbigcg.html" .
 
 <https://bio.tools/dbindr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -160837,7 +155151,7 @@ DNA mismatch repair (MMR) genes play an important role in maintaining genomic st
     sc:url "http://www.cbi.seu.edu.cn/DBindR/DBindR.htm" .
 
 <https://bio.tools/dbmae> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
@@ -160860,7 +155174,7 @@ DNA mismatch repair (MMR) genes play an important role in maintaining genomic st
     sc:url "https://mae.hms.harvard.edu/aboutmae.php" .
 
 <https://bio.tools/dbmcs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0208,
@@ -160878,7 +155192,7 @@ DNA mismatch repair (MMR) genes play an important role in maintaining genomic st
     sc:url "http://bioinfo.aielab.cc/dbMCS/" .
 
 <https://bio.tools/dbmhcc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -160898,7 +155212,7 @@ DNA mismatch repair (MMR) genes play an important role in maintaining genomic st
     sc:url "http://predictor.nchu.edu.tw/dBMHCC" .
 
 <https://bio.tools/dbmts> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0203,
@@ -160916,7 +155230,7 @@ DNA mismatch repair (MMR) genes play an important role in maintaining genomic st
     sc:url "http://database.liulab.science/dbMTS" .
 
 <https://bio.tools/dbnp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3071,
         edam:topic_3390 ;
@@ -160933,7 +155247,7 @@ DNA mismatch repair (MMR) genes play an important role in maintaining genomic st
     sc:url "http://dbnp.org/" .
 
 <https://bio.tools/dbnsfp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
@@ -160963,7 +155277,7 @@ DNA mismatch repair (MMR) genes play an important role in maintaining genomic st
     biotools:primaryContact "Xiaoming Liu" .
 
 <https://bio.tools/dbpepneo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
@@ -160982,7 +155296,7 @@ DNA mismatch repair (MMR) genes play an important role in maintaining genomic st
     sc:url "http://www.biostatistics.online/dbPepNeo/" .
 
 <https://bio.tools/dbpom> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3336,
@@ -160997,7 +155311,7 @@ DNA mismatch repair (MMR) genes play an important role in maintaining genomic st
     sc:url "http://www.dbpom.net/" .
 
 <https://bio.tools/dbpr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0203,
@@ -161015,7 +155329,7 @@ Databases of plants have been an integral part of modern biology.""" ;
     sc:url "https://www.habdsk.org/dbpr.php" .
 
 <https://bio.tools/dbpred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0130,
@@ -161035,7 +155349,7 @@ Databases of plants have been an integral part of modern biology.""" ;
     sc:url "https://webs.iiitd.edu.in/raghava/dbpred" .
 
 <https://bio.tools/dbpsp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0601,
@@ -161058,7 +155372,7 @@ Databases of plants have been an integral part of modern biology.""" ;
     sc:url "http://dbpsp.biocuckoo.cn" .
 
 <https://bio.tools/dbptm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0601 ;
@@ -161076,8 +155390,63 @@ Databases of plants have been an integral part of modern biology.""" ;
     sc:url "http://dbptm.mbc.nctu.edu.tw" ;
     biotools:primaryContact "Support" .
 
+<https://bio.tools/dbptm_database> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_0968" ;
+            sc:name "Keyword" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2291" ;
+            sc:name "UniProt ID" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0080,
+        edam:topic_0121,
+        edam:topic_0128,
+        edam:topic_0601,
+        edam:topic_3520 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAB1017>,
+        "pmcid:PMC8728263",
+        "pubmed:34788852" ;
+    sc:description "An updated database for exploring regulatory networks and functional associations of protein post-translational modifications." ;
+    sc:featureList edam:operation_0417,
+        edam:operation_2421,
+        edam:operation_3755 ;
+    sc:isAccessibleForFree true ;
+    sc:name "dbPTM" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://awi.cuhk.edu.cn/dbPTM/" .
+
+<https://bio.tools/dbpup> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0623,
+        edam:topic_3172,
+        edam:topic_3174,
+        edam:topic_3407,
+        edam:topic_3697 ;
+    sc:citation <https://doi.org/10.1128/AEM.01851-21>,
+        "pmcid:PMC8824206",
+        "pubmed:34851722" ;
+    sc:description "dbPUP is a database of polyphenol utilization proteins (PUPs) that have been experimentally characterized to metabolize polyphenol substrates." ;
+    sc:featureList edam:operation_0303,
+        edam:operation_2422,
+        edam:operation_3501 ;
+    sc:isAccessibleForFree true ;
+    sc:name "dbPUP" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://bcb.unl.edu/dbpup/" .
+
 <https://bio.tools/dbsav-database> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -161096,7 +155465,7 @@ Databases of plants have been an integral part of modern biology.""" ;
     biotools:primaryContact "Nick V. Grishin" .
 
 <https://bio.tools/dbscan-swa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_0654,
@@ -161113,16 +155482,36 @@ Bacteriophages are viruses that specifically infect bacteria and the infected ba
     sc:name "DBSCAN-SWA" ;
     sc:url "https://github.com/HIT-ImmunologyLab/DBSCAN-SWA/" .
 
+<https://bio.tools/dbscorer> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_3304,
+        edam:topic_3500 ;
+    sc:citation <https://doi.org/10.1523/ENEURO.0305-21.2021>,
+        "pmcid:PMC8570685",
+        "pubmed:34625460" ;
+    sc:description "An Open-Source Software for Automated Accurate Analysis of Rodent Behavior in Forced Swim Test and Tail Suspension Test." ;
+    sc:featureList edam:operation_2940,
+        edam:operation_3659,
+        edam:operation_3799 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "DBscorer" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://github.com/swanandlab/DBscorer" .
+
 <https://bio.tools/dbsnp> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1106" ;
-            sc:name "dbSNP ID" ;
-            sc:sameAs "http://edamontology.org/data_1106" ] ;
+            sc:additionalType "http://edamontology.org/data_1106" ;
+            sc:name "dbSNP ID" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Sequence variations" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -161143,7 +155532,7 @@ Bacteriophages are viruses that specifically infect bacteria and the infected ba
     sc:url "http://www.ncbi.nlm.nih.gov/SNP/" .
 
 <https://bio.tools/dbsnp-gui> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_2885,
@@ -161162,7 +155551,7 @@ Bacteriophages are viruses that specifically infect bacteria and the infected ba
     biotools:primaryContact "Colin Clarke" .
 
 <https://bio.tools/dbsnp-q> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0199,
@@ -161183,7 +155572,7 @@ Bacteriophages are viruses that specifically infect bacteria and the infected ba
     biotools:primaryContact "dbSNP-Q Support" .
 
 <https://bio.tools/dbsolve_optimum> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0202,
         edam:topic_0602,
@@ -161200,7 +155589,7 @@ Bacteriophages are viruses that specifically infect bacteria and the infected ba
     biotools:primaryContact "Nail M Gizzatkulov" .
 
 <https://bio.tools/dbstrips> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0157,
@@ -161224,14 +155613,13 @@ Bacteriophages are viruses that specifically infect bacteria and the infected ba
 
 <https://bio.tools/dbsts> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2389" ;
-            sc:name "UniSTS accession" ;
-            sc:sameAs "http://edamontology.org/data_2389" ] ;
+            sc:additionalType "http://edamontology.org/data_2389" ;
+            sc:name "UniSTS accession" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0916" ;
-            sc:name "Gene report" ;
-            sc:sameAs "http://edamontology.org/data_0916" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0916" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Gene report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0102 ;
     sc:citation <https://doi.org/10.1126/science.2781285>,
@@ -161246,7 +155634,7 @@ Bacteriophages are viruses that specifically infect bacteria and the infected ba
     sc:url "http://www.ncbi.nlm.nih.gov/dbSTS/" .
 
 <https://bio.tools/dbsuper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_2815,
@@ -161267,10 +155655,9 @@ Bacteriophages are viruses that specifically infect bacteria and the infected ba
 
 <https://bio.tools/dbtell> a sc:SoftwareApplication ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0957" ;
-            sc:name "Database metadata" ;
-            sc:sameAs "http://edamontology.org/data_0957" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0957" ;
+            sc:name "Database metadata" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -161301,14 +155688,13 @@ Bacteriophages are viruses that specifically infect bacteria and the infected ba
 
 <https://bio.tools/dbtoolkit> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2080" ;
-            sc:name "Database search results" ;
-            sc:sameAs "http://edamontology.org/data_2080" ] ;
+            sc:additionalType "http://edamontology.org/data_2080" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Database search results" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2080" ;
-            sc:name "Database search results" ;
-            sc:sameAs "http://edamontology.org/data_2080" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2080" ;
+            sc:name "Database search results" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_3071 ;
@@ -161326,7 +155712,7 @@ Bacteriophages are viruses that specifically infect bacteria and the infected ba
     biotools:primaryContact "Lennart Martens" .
 
 <https://bio.tools/dbtools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:description "Collection of programs to manipulate sequence databanks files." ;
@@ -161334,7 +155720,7 @@ Bacteriophages are viruses that specifically infect bacteria and the infected ba
     sc:url "https://bioweb.pasteur.fr/packages/pack@dbtools@0.99c" .
 
 <https://bio.tools/dbtpred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2269,
@@ -161353,8 +155739,30 @@ Bacteriophages are viruses that specifically infect bacteria and the infected ba
         "Windows" ;
     sc:url "https://github.com/fpy94/DBT" .
 
+<https://bio.tools/dbtrend> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0108,
+        edam:topic_0203,
+        edam:topic_0659,
+        edam:topic_3170,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.3390/GENES12101576>,
+        "pmcid:PMC8535304",
+        "pubmed:34680971" ;
+    sc:description "A Web-Server of tRNA Expression Profiles from Small RNA Sequencing Data in Humans." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_0464,
+        edam:operation_3792 ;
+    sc:isAccessibleForFree true ;
+    sc:name "DBtRend" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://trend.pmrc.re.kr/" .
+
 <https://bio.tools/dbtss> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0749,
@@ -161378,7 +155786,7 @@ Bacteriophages are viruses that specifically infect bacteria and the infected ba
     biotools:primaryContact "Y. Suzuki" .
 
 <https://bio.tools/dbvar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0199 ;
     sc:description "NCBI's database of genomic structural variation – it contains insertions, deletions, duplications, inversions, multinucleotide substitutions, mobile element insertions, translocations, and complex chromosomal rearrangements" ;
@@ -161393,10 +155801,9 @@ Bacteriophages are viruses that specifically infect bacteria and the infected ba
 
 <https://bio.tools/dbxcompress> a sc:SoftwareApplication ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -161426,7 +155833,7 @@ Bacteriophages are viruses that specifically infect bacteria and the infected ba
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/dbxcompress.html" .
 
 <https://bio.tools/dbxedam> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -161456,7 +155863,7 @@ Bacteriophages are viruses that specifically infect bacteria and the infected ba
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/dbxedam.html" .
 
 <https://bio.tools/dbxfasta> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -161487,10 +155894,9 @@ Bacteriophages are viruses that specifically infect bacteria and the infected ba
 
 <https://bio.tools/dbxflat> a sc:SoftwareApplication ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0958" ;
-            sc:name "Tool metadata" ;
-            sc:sameAs "http://edamontology.org/data_0958" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0958" ;
+            sc:name "Tool metadata" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -161520,7 +155926,7 @@ Bacteriophages are viruses that specifically infect bacteria and the infected ba
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/dbxflat.html" .
 
 <https://bio.tools/dbxgcg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -161550,7 +155956,7 @@ Bacteriophages are viruses that specifically infect bacteria and the infected ba
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/dbxgcg.html" .
 
 <https://bio.tools/dbxobo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -161581,10 +155987,9 @@ Bacteriophages are viruses that specifically infect bacteria and the infected ba
 
 <https://bio.tools/dbxreport> a sc:SoftwareApplication ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -161614,7 +156019,7 @@ Bacteriophages are viruses that specifically infect bacteria and the infected ba
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/dbxreport.html" .
 
 <https://bio.tools/dbxresource> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -161645,10 +156050,9 @@ Bacteriophages are viruses that specifically infect bacteria and the infected ba
 
 <https://bio.tools/dbxstat> a sc:SoftwareApplication ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -161678,7 +156082,7 @@ Bacteriophages are viruses that specifically infect bacteria and the infected ba
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/dbxstat.html" .
 
 <https://bio.tools/dbxtax> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -161709,10 +156113,9 @@ Bacteriophages are viruses that specifically infect bacteria and the infected ba
 
 <https://bio.tools/dbxuncompress> a sc:SoftwareApplication ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -161742,7 +156145,7 @@ Bacteriophages are viruses that specifically infect bacteria and the infected ba
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/dbxuncompress.html" .
 
 <https://bio.tools/dcabm-tcm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0202,
@@ -161757,16 +156160,62 @@ Bacteriophages are viruses that specifically infect bacteria and the infected ba
     sc:name "DCABM-TCM" ;
     sc:url "http://bionet.ncpsb.org.cn/dcabm-tcm/" .
 
+<https://bio.tools/dccov> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0602,
+        edam:topic_0781,
+        edam:topic_3375,
+        edam:topic_3407 ;
+    sc:citation <https://doi.org/10.1016/J.ISCI.2021.103331>,
+        "pmcid:PMC8536485",
+        "pubmed:34723158" ;
+    sc:description "Drug repositioning of single and drug combinations using Flux Balance Analysis" ;
+    sc:featureList edam:operation_3223,
+        edam:operation_3660,
+        edam:operation_3891,
+        edam:operation_3929 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "DCcov" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/sysbiolux/DCcov" .
+
+<https://bio.tools/dce> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0602,
+        edam:topic_0769,
+        edam:topic_2229,
+        edam:topic_2640 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAB847>,
+        "pubmed:34927666" ;
+    sc:description "Identifying cancer pathway dysregulations using differential causal effects." ;
+    sc:featureList edam:operation_2428,
+        edam:operation_3435,
+        edam:operation_3659 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "dce" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://bioconductor.org/packages/release/bioc/html/dce.html" .
+
 <https://bio.tools/dcell> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0976" ;
-            sc:name "Identifier (by type of data)" ;
-            sc:sameAs "http://edamontology.org/data_0976" ] ;
+            sc:additionalType "http://edamontology.org/data_0976" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Identifier (by type of data)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Pathway or network" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3473,
@@ -161786,7 +156235,7 @@ Bacteriophages are viruses that specifically infect bacteria and the infected ba
     biotools:primaryContact "Keiichiro Ono" .
 
 <https://bio.tools/dcgl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0204,
@@ -161806,7 +156255,7 @@ Bacteriophages are viruses that specifically infect bacteria and the infected ba
     biotools:primaryContact "Bao-Hong Liu" .
 
 <https://bio.tools/dcgor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0160,
@@ -161826,7 +156275,7 @@ Bacteriophages are viruses that specifically infect bacteria and the infected ba
     biotools:primaryContact "Hai Fang" .
 
 <https://bio.tools/dcgsa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203 ;
@@ -161845,7 +156294,7 @@ Bacteriophages are viruses that specifically infect bacteria and the infected ba
     biotools:primaryContact "Jiehuan sun" .
 
 <https://bio.tools/dchap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0634,
@@ -161860,7 +156309,7 @@ Bacteriophages are viruses that specifically infect bacteria and the infected ba
     sc:url "https://github.com/yanboANU/Haplotype-phasing" .
 
 <https://bio.tools/dchiprep> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3169 ;
@@ -161880,7 +156329,7 @@ Bacteriophages are viruses that specifically infect bacteria and the infected ba
     biotools:primaryContact "Bernd Klaus" .
 
 <https://bio.tools/dci> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0602,
@@ -161897,8 +156346,29 @@ Bacteriophages are viruses that specifically infect bacteria and the infected ba
     sc:softwareHelp <https://uhlerlab.github.io/causaldag/dci_tutorial.html> ;
     sc:url "http://uhlerlab.github.io/causaldag/dci" .
 
+<https://bio.tools/dclear> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0084,
+        edam:topic_2229,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1186/S12859-022-04633-X>,
+        "pmcid:PMC8944039",
+        "pubmed:35331133" ;
+    sc:description "Single cell lineage reconstruction using distance-based algorithms and the R package, DCLEAR" ;
+    sc:featureList edam:operation_0289,
+        edam:operation_0323,
+        edam:operation_3096 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "DCLEAR" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/ikwak2/DCLEAR" .
+
 <https://bio.tools/dclip> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation "pubmed:24398258" ;
@@ -161913,20 +156383,8 @@ Bacteriophages are viruses that specifically infect bacteria and the infected ba
         "Guanghua Xiao",
         "Yang Xie" .
 
-<https://bio.tools/dcm2niix> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3384,
-        edam:topic_3444,
-        edam:topic_3452 ;
-    sc:citation <https://doi.org/10.3389/FNINF.2019.00061>,
-        "pmcid:PMC6738271",
-        "pubmed:31551745" ;
-    sc:description "> LOW CONFIDENCE! | > CORRECT NAME OF TOOL COULD ALSO BE 'DICOM', 'MRI', 'BET', 'imaging' | Recommendations for Processing Head CT Data | dcm2nii DICOM to NIfTI converter: compiled versions available from NITRC | dcm2niix is a designed to convert neuroimaging data from the DICOM format to the NIfTI format. This web page hosts the developmental source code - a compiled version for Linux, MacOS, and Windows of the most recent stable release is included with MRIcroGL. A full manual for this software is available in the form of a NITRC wiki" ;
-    sc:featureList edam:operation_3443 ;
-    sc:name "dcm2niix" ;
-    sc:url "https://github.com/rordenlab/dcm2niix" .
-
 <https://bio.tools/dcmd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Script" ;
     sc:applicationSubCategory edam:topic_2640,
@@ -161945,7 +156403,7 @@ Bacteriophages are viruses that specifically infect bacteria and the infected ba
     biotools:primaryContact "Wei Xu" .
 
 <https://bio.tools/dcmqi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0605,
         edam:topic_3360,
         edam:topic_3384,
@@ -161965,7 +156423,7 @@ Bacteriophages are viruses that specifically infect bacteria and the infected ba
     sc:url "https://github.com/QIICR/dcmqi" .
 
 <https://bio.tools/dcn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3068,
@@ -161981,16 +156439,38 @@ Bacteriophages are viruses that specifically infect bacteria and the infected ba
     sc:name "DCN" ;
     sc:url "https://github.com/qunfengdong/DCN" .
 
+<https://bio.tools/dcnet> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0602,
+        edam:topic_2229,
+        edam:topic_3170,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1080/2162402X.2022.2043662>,
+        "pmcid:PMC8890395",
+        "pubmed:35251771" ;
+    sc:description "Deconvolution network (DCNet), an \"explainable\" artificial neural network model was created to infer cell content from bulk RNA-Seq samples." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_3629,
+        edam:operation_3927 ;
+    sc:license "Not licensed" ;
+    sc:name "DCNet" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/xindd/DCNet" .
+
 <https://bio.tools/dcon> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0897" ;
-            sc:name "Protein property" ;
-            sc:sameAs "http://edamontology.org/data_0897" ] ;
+            sc:additionalType "http://edamontology.org/data_0897" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Protein property" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
@@ -162009,7 +156489,7 @@ Bacteriophages are viruses that specifically infect bacteria and the infected ba
     biotools:primaryContact "Piero Fariselli" .
 
 <https://bio.tools/dconstruct> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0130,
         edam:topic_0593,
@@ -162027,7 +156507,7 @@ Bacteriophages are viruses that specifically infect bacteria and the infected ba
     sc:url "https://github.com/Bhattacharya-Lab/DConStruct" .
 
 <https://bio.tools/dcp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3304,
@@ -162041,7 +156521,7 @@ Bacteriophages are viruses that specifically infect bacteria and the infected ba
     sc:url "https://www.nitrc.org/projects/dcp" .
 
 <https://bio.tools/dcs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2229,
         edam:topic_3170,
@@ -162057,7 +156537,7 @@ Bacteriophages are viruses that specifically infect bacteria and the infected ba
     sc:url "https://github.com/sdomanskyi/DigitalCellSorter/" .
 
 <https://bio.tools/dctl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3302,
@@ -162073,8 +156553,28 @@ Parasitologist-level classification of apicomplexan parasites and host cell with
     sc:name "DCTL" ;
     sc:url "https://github.com/senli2018/DCTL" .
 
+<https://bio.tools/dd-gui> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_2275,
+        edam:topic_3343 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAB771>,
+        "pubmed:34788802" ;
+    sc:description "A Graphical User Interface for Deep Learning-Accelerated Virtual Screening of Large Chemical Libraries (Deep Docking)." ;
+    sc:featureList edam:operation_3216,
+        edam:operation_3454,
+        edam:operation_3938 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "DD-GUI" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/jamesgleave/DeepDockingGUI" .
+
 <https://bio.tools/ddSeeker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3170,
@@ -162095,7 +156595,7 @@ Parasitologist-level classification of apicomplexan parasites and host cell with
     sc:url "https://github.com/cgplab/ddSeeker" .
 
 <https://bio.tools/ddapred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3336,
@@ -162111,7 +156611,7 @@ Parasitologist-level classification of apicomplexan parasites and host cell with
     sc:url "https://github.com/nongdaxiaofeng/DDAPRED" .
 
 <https://bio.tools/ddbj> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_3168,
         edam:topic_3489,
@@ -162134,7 +156634,7 @@ Parasitologist-level classification of apicomplexan parasites and host cell with
     sc:url "http://www.ddbj.nig.ac.jp" .
 
 <https://bio.tools/ddbrna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0099 ;
@@ -162153,7 +156653,7 @@ Parasitologist-level classification of apicomplexan parasites and host cell with
     biotools:primaryContact <http://orcid.org/0000-0002-1911-7407> .
 
 <https://bio.tools/ddccnn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0108,
@@ -162174,7 +156674,7 @@ Parasitologist-level classification of apicomplexan parasites and host cell with
     sc:url "http://www.ddccnn.wang" .
 
 <https://bio.tools/ddcmd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0153,
         edam:topic_0176,
@@ -162192,7 +156692,7 @@ ddcMDconverter should be used to convert GROMACS inputs to ddcMD inputs""" ;
     sc:url "https://github.com/LLNL/ddcMD" .
 
 <https://bio.tools/ddct> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3519 ;
@@ -162210,7 +156710,7 @@ ddcMDconverter should be used to convert GROMACS inputs to ddcMD inputs""" ;
     biotools:primaryContact "Jitao David Zhang" .
 
 <https://bio.tools/ddecon> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3383,
@@ -162230,7 +156730,7 @@ ddcMDconverter should be used to convert GROMACS inputs to ddcMD inputs""" ;
     biotools:primaryContact <http://orcid.org/0000-0002-3161-8802> .
 
 <https://bio.tools/ddeep3m> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0611,
         edam:topic_3303,
         edam:topic_3444 ;
@@ -162242,7 +156742,7 @@ ddcMDconverter should be used to convert GROMACS inputs to ddcMD inputs""" ;
     sc:url "https://github.com/cakuba/DDeep3m" .
 
 <https://bio.tools/ddgraph> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -162265,14 +156765,14 @@ ddcMDconverter should be used to convert GROMACS inputs to ddcMD inputs""" ;
 
 <https://bio.tools/ddgun> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ],
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein structure" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:citation <https://doi.org/10.1186/s12859-019-2923-1>,
         "pmcid:PMC6606456",
@@ -162288,7 +156788,7 @@ ddcMDconverter should be used to convert GROMACS inputs to ddcMD inputs""" ;
     sc:url "https://github.com/biofold/ddgun" .
 
 <https://bio.tools/ddi-cpi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0154,
@@ -162312,7 +156812,7 @@ ddcMDconverter should be used to convert GROMACS inputs to ddcMD inputs""" ;
     biotools:primaryContact "DDI-CPI Support" .
 
 <https://bio.tools/ddiem> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "SPARQL endpoint" ;
     sc:applicationSubCategory edam:topic_0089,
@@ -162328,7 +156828,7 @@ ddcMDconverter should be used to convert GROMACS inputs to ddcMD inputs""" ;
     sc:url "http://ddiem.phenomebrowser.net" .
 
 <https://bio.tools/ddimdl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0602,
@@ -162344,8 +156844,51 @@ ddcMDconverter should be used to convert GROMACS inputs to ddcMD inputs""" ;
     sc:name "DDIMDL" ;
     sc:url "https://github.com/YifanDengWHU/DDIMDL" .
 
+<https://bio.tools/ddinter> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2899" ;
+            sc:name "Drug name" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0202,
+        edam:topic_3375,
+        edam:topic_3378,
+        edam:topic_3400,
+        edam:topic_3407 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAB880>,
+        "pmcid:PMC8728114",
+        "pubmed:34634800" ;
+    sc:description "An online drug-drug interaction database towards improving clinical decision-making and patient safety." ;
+    sc:featureList edam:operation_0224 ;
+    sc:isAccessibleForFree true ;
+    sc:name "DDInter" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://ddinter.scbdd.com/" .
+
+<https://bio.tools/ddipf> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_2269,
+        edam:topic_3377,
+        edam:topic_3379 ;
+    sc:citation <https://doi.org/10.1155/2022/7818480>,
+        "pmcid:PMC9110191",
+        "pubmed:35586666" ;
+    sc:description "Drug-drug interaction prediction with fingerprint (DDIPF): A web-server for predicting the probability that two drugs can interact." ;
+    sc:featureList edam:operation_0224,
+        edam:operation_4009 ;
+    sc:license "Not licensed" ;
+    sc:name "DDIPF" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://106.14.164.77:5004/DDIPF/" .
+
 <https://bio.tools/ddna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btq295> ;
@@ -162358,7 +156901,7 @@ ddcMDconverter should be used to convert GROMACS inputs to ddcMD inputs""" ;
     sc:url "http://sparks-lab.org/yueyang/DFIRE/ddna3-DB-service.php" .
 
 <https://bio.tools/ddpc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -162381,7 +156924,7 @@ DDPC provides gene-associated data such as protein annotation, molecular pathway
     biotools:primaryContact "Vlad Bajic" .
 
 <https://bio.tools/ddpcr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_2269,
@@ -162402,7 +156945,7 @@ DDPC provides gene-associated data such as protein annotation, molecular pathway
     biotools:primaryContact <http://orcid.org/0000-0002-6983-2759> .
 
 <https://bio.tools/ddpcrclust> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -162423,7 +156966,7 @@ DDPC provides gene-associated data such as protein annotation, molecular pathway
     biotools:primaryContact "Benedikt G Brink" .
 
 <https://bio.tools/ddrp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3390,
@@ -162439,26 +156982,26 @@ A final production version of the DDRP platform that includes cohorts, parallel
 
 <https://bio.tools/de-sim> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ],
+            sc:additionalType "http://edamontology.org/data_3869" ;
+            sc:encodingFormat "http://edamontology.org/format_3996" ;
+            sc:name "Simulation" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0950" ;
-            sc:name "Mathematical model" ;
-            sc:sameAs "http://edamontology.org/data_0950" ],
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:encodingFormat "http://edamontology.org/format_3996" ;
+            sc:name "Pathway or network" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3869" ;
-            sc:name "Simulation" ;
-            sc:sameAs "http://edamontology.org/data_3869" ] ;
+            sc:additionalType "http://edamontology.org/data_0950" ;
+            sc:encodingFormat "http://edamontology.org/format_3996" ;
+            sc:name "Mathematical model" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ],
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3603" ;
+            sc:name "Plot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3870" ;
-            sc:name "Trajectory data" ;
-            sc:sameAs "http://edamontology.org/data_3870" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3870" ;
+            sc:encodingFormat "http://edamontology.org/format_3590" ;
+            sc:name "Trajectory data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0605,
         edam:topic_3316,
@@ -162478,7 +157021,7 @@ A final production version of the DDRP platform that includes cohorts, parallel
     biotools:primaryContact <https://orcid.org/0000-0002-2605-5080> .
 
 <https://bio.tools/de-stress> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0130,
         edam:topic_3068,
@@ -162494,7 +157037,7 @@ A final production version of the DDRP platform that includes cohorts, parallel
     biotools:primaryContact <https://orcid.org/0000-0003-1243-3105> .
 
 <https://bio.tools/deBGA-VARA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0102,
@@ -162514,7 +157057,7 @@ deBGA-VARA is a novel variation-aware high-throughput sequencing read aligner. V
     sc:url "https://github.com/hitbc/deBGA-VARA" .
 
 <https://bio.tools/deGSM> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3168 ;
@@ -162534,7 +157077,7 @@ deBGA-VARA is a novel variation-aware high-throughput sequencing read aligner. V
         "Yadong Wang" .
 
 <https://bio.tools/deML> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btu719>,
@@ -162547,7 +157090,7 @@ deBGA-VARA is a novel variation-aware high-throughput sequencing read aligner. V
     sc:url "http://grenaud.github.io/deML/" .
 
 <https://bio.tools/deSALT> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3170,
@@ -162570,7 +157113,7 @@ deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads""" ;
     sc:url "https://github.com/ydLiu-HIT/deSALT" .
 
 <https://bio.tools/deSAMBA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0637,
         edam:topic_3168,
@@ -162584,8 +157127,39 @@ deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads""" ;
     sc:name "deSAMBA" ;
     sc:url "https://github.com/hitbc/deSAMBA" .
 
+<https://bio.tools/deap> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:citation <https://doi.org/10.1371/journal.pcbi.1002967>,
+        "pubmed:23516350" ;
+    sc:description "DEAP, Differential Expression Analysis for Pathways, which capitalizes on information about biological pathways to identify important regulatory patterns from differential expression data. DEAP makes significant improvements over existing approaches by including information about pathway structure and discovering the most differentially expressed portion of the pathway. On simulated data, DEAP significantly outperformed traditional methods: with high differential expression, DEAP increased power by two orders of magnitude; with very low differential expression, DEAP doubled the power. DEAP performance was illustrated on two different gene and protein expression studies. DEAP discovered fourteen important pathways related to chronic obstructive pulmonary disease and interferon treatment that existing approaches omitted. On the interferon study, DEAP guided focus towards a four protein path within the 26 protein Notch signalling pathway." ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "DEAP" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://doi.org/10.1371/journal.pcbi.1002967.s010" .
+
+<https://bio.tools/deathdaily> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:citation <https://doi.org/10.1007/S13721-022-00359-1>,
+        "pmcid:PMC8934376",
+        "pubmed:35342683" ;
+    sc:description "A Python Package Index for predicting the number of daily COVID-19 deaths." ;
+    sc:featureList edam:operation_0416,
+        edam:operation_0560 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "deathdaily" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://pepy.tech/project/deathdaily" .
+
 <https://bio.tools/deathdomain> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0128,
@@ -162607,7 +157181,7 @@ deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads""" ;
     biotools:primaryContact "Support" .
 
 <https://bio.tools/debar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0632,
@@ -162622,7 +157196,7 @@ deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads""" ;
     sc:url "https://CRAN.R-project.org/package=debar" .
 
 <https://bio.tools/debay> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -162640,7 +157214,7 @@ deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads""" ;
     sc:url "https://sourceforge.net/projects/debay" .
 
 <https://bio.tools/debcam> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -162658,7 +157232,7 @@ deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads""" ;
     sc:url "http://bioconductor.org/packages/debCAM" .
 
 <https://bio.tools/debks> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0203,
@@ -162675,7 +157249,7 @@ deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads""" ;
     sc:url "https://github.com/yangence/DEBKS" .
 
 <https://bio.tools/deboost> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3474 ;
@@ -162688,8 +157262,29 @@ deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads""" ;
     sc:name "deboost" ;
     sc:url "https://pypi.org/project/deboost" .
 
+<https://bio.tools/debreak> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0196,
+        edam:topic_3168,
+        edam:topic_3175,
+        edam:topic_3794 ;
+    sc:citation <https://doi.org/10.21203/RS.3.RS-1261915/V1> ;
+    sc:description "Deciphering the exact breakpoints of structural variations using long sequencing reads." ;
+    sc:featureList edam:operation_0308,
+        edam:operation_0524,
+        edam:operation_3196,
+        edam:operation_3802 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "DeBreak" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/Maggi-Chen/DeBreak" .
+
 <https://bio.tools/debrowser> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203 ;
@@ -162707,7 +157302,7 @@ deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads""" ;
     biotools:primaryContact "Alper Kucukural" .
 
 <https://bio.tools/deca> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0218,
@@ -162728,7 +157323,7 @@ deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads""" ;
     biotools:primaryContact "Xinglong Wang" .
 
 <https://bio.tools/deca-hdx> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3306,
@@ -162746,7 +157341,7 @@ deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads""" ;
     sc:url "http://github.com/komiveslab/DECA" .
 
 <https://bio.tools/deca-xhmm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3676 ;
     sc:citation <https://doi.org/10.1186/s12859-019-3108-7>,
@@ -162759,8 +157354,27 @@ deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads""" ;
         "Windows" ;
     sc:url "https://github.com/bigdatagenomics/deca" .
 
+<https://bio.tools/decaf> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_0203,
+        edam:topic_2640,
+        edam:topic_3170,
+        edam:topic_3517 ;
+    sc:citation <https://doi.org/10.1186/S13059-022-02708-9>,
+        "pmcid:PMC9264694",
+        "pubmed:35804456" ;
+    sc:description "DeCAF (DEconvoluted cell type Allele specific Function): Identify cell-type specific QTL effects in tumors by leveraging both allelic and total expression information" ;
+    sc:featureList edam:operation_3232,
+        edam:operation_3629,
+        edam:operation_3799 ;
+    sc:license "GPL-3.0" ;
+    sc:name "DeCAF" ;
+    sc:url "https://github.com/cakalita/stratAS/tree/DeCAF" .
+
 <https://bio.tools/decban> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0602,
@@ -162777,7 +157391,7 @@ deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads""" ;
     sc:url "https://github.com/AaronYll/DECban" .
 
 <https://bio.tools/decgpu> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196 ;
     sc:citation "pubmed:21447171" ;
@@ -162791,7 +157405,7 @@ deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads""" ;
     biotools:primaryContact "Dr. Yongchao Liu" .
 
 <https://bio.tools/decifer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0625,
@@ -162809,7 +157423,7 @@ deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads""" ;
         <https://orcid.org/0000-0003-1274-048X> .
 
 <https://bio.tools/decimer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2258,
@@ -162827,22 +157441,22 @@ deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads""" ;
 
 <https://bio.tools/decipher> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3494" ;
-            sc:name "DNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3494" ],
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:encodingFormat "http://edamontology.org/format_1936" ;
+            sc:name "DNA sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3495" ;
-            sc:name "RNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3495" ] ;
+            sc:additionalType "http://edamontology.org/data_3495" ;
+            sc:encodingFormat "http://edamontology.org/format_1936" ;
+            sc:name "RNA sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ],
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Plot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -162861,7 +157475,7 @@ deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads""" ;
     biotools:primaryContact "Erik Wright" .
 
 <https://bio.tools/decision-tree> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3474 ;
     sc:citation <https://doi.org/10.1016/J.CMPB.2019.06.014>,
         "pubmed:31416565" ;
@@ -162870,7 +157484,7 @@ deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads""" ;
     sc:url "https://codeocean.com/2018/03/08/a-decision-tree-approach-for-the-differential-diagnosis-of-chronic-lymphoid-leukemias-and-peripheral-b-cell-lymphomas/" .
 
 <https://bio.tools/decision-trees-predictive-models-validation> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3473,
@@ -162888,7 +157502,7 @@ deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads""" ;
     biotools:primaryContact "Andrea Padoan" .
 
 <https://bio.tools/deco> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0203,
@@ -162907,7 +157521,7 @@ deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads""" ;
     biotools:primaryContact <https://orcid.org/0000-0001-6910-7269> .
 
 <https://bio.tools/decoad> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0208,
@@ -162928,7 +157542,7 @@ deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads""" ;
     biotools:primaryContact "Mehdi Bagheri Hamaneh" .
 
 <https://bio.tools/decode> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1038/ng917> ;
@@ -162946,7 +157560,7 @@ deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads""" ;
     biotools:primaryContact "Training" .
 
 <https://bio.tools/decode-codon> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0130,
         edam:topic_0154,
@@ -162968,7 +157582,7 @@ To run DeCoDe, you will need a local installation of Gurobi with an appropriate
     sc:url "http://github.com/OrensteinLab/DeCoDe" .
 
 <https://bio.tools/decode-framework> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0749,
@@ -162981,8 +157595,27 @@ To run DeCoDe, you will need a local installation of Gurobi with an appropriate
     sc:name "DECODE" ;
     sc:url "http://decode.gersteinlab.org" .
 
+<https://bio.tools/decode_python_lib> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0160,
+        edam:topic_0769,
+        edam:topic_2830,
+        edam:topic_3400 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC257>,
+        "pmcid:PMC9235487",
+        "pubmed:35758821" ;
+    sc:description "DECODE is a python package that allows the user to generate explanations for a TCR binding model." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_0416,
+        edam:operation_3432 ;
+    sc:license "Not licensed" ;
+    sc:name "DECODE" ;
+    sc:operatingSystem "Linux" ;
+    sc:url "https://github.com/phineasng/DECODE" .
+
 <https://bio.tools/decombinator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_1317,
         edam:topic_2830,
@@ -162998,7 +157631,7 @@ To run DeCoDe, you will need a local installation of Gurobi with an appropriate
     biotools:primaryContact "Benjamin Chain" .
 
 <https://bio.tools/decompTumor2Sig> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_2640,
@@ -163022,7 +157655,7 @@ To run DeCoDe, you will need a local installation of Gurobi with an appropriate
     biotools:primaryContact "Prof. Dr. Rosario M. Piro" .
 
 <https://bio.tools/decomplexdisease> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0085,
         edam:topic_0203,
@@ -163042,7 +157675,7 @@ To run DeCoDe, you will need a local installation of Gurobi with an appropriate
     biotools:primaryContact "Guofeng Meng" .
 
 <https://bio.tools/decomppipeline> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:citation <https://doi.org/10.1038/s41596-020-0369-6> ;
     sc:description "DecompPipeline provides a comprehensive list of preprocessing functions for performing reference-free deconvolution of complex DNA methylation data." ;
     sc:name "DecompPipeline" ;
@@ -163050,7 +157683,7 @@ To run DeCoDe, you will need a local installation of Gurobi with an appropriate
     sc:url "https://github.com/CompEpigen/DecompPipeline" .
 
 <https://bio.tools/decompress> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2640,
@@ -163066,7 +157699,7 @@ To run DeCoDe, you will need a local installation of Gurobi with an appropriate
     sc:url "https://github.com/bhattacharya-a-bt/DeCompress" .
 
 <https://bio.tools/decon2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0625,
         edam:topic_2229,
@@ -163085,7 +157718,7 @@ To run DeCoDe, you will need a local installation of Gurobi with an appropriate
     sc:url "https://github.com/molgenis/systemsgenetics/tree/master/Decon2" .
 
 <https://bio.tools/deconbench> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3295,
@@ -163100,26 +157733,26 @@ To run DeCoDe, you will need a local installation of Gurobi with an appropriate
 
 <https://bio.tools/deconmsn> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ],
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:encodingFormat "http://edamontology.org/format_3654" ;
+            sc:name "Mass spectrometry data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ] ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3654" ;
+            sc:name "Mass spectrometry spectra" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0944" ;
-            sc:name "Peptide mass fingerprint" ;
-            sc:sameAs "http://edamontology.org/data_0944" ],
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:encodingFormat "http://edamontology.org/format_3652" ;
+            sc:name "Mass spectrometry data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ],
+            sc:additionalType "http://edamontology.org/data_0944" ;
+            sc:encodingFormat "http://edamontology.org/format_3652" ;
+            sc:name "Peptide mass fingerprint" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3652" ;
+            sc:name "Mass spectrometry spectra" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -163135,7 +157768,7 @@ To run DeCoDe, you will need a local installation of Gurobi with an appropriate
     sc:url "http://omics.pnl.gov/software/DeconMSn.php" .
 
 <https://bio.tools/deconpeaker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2229,
@@ -163153,7 +157786,7 @@ To run DeCoDe, you will need a local installation of Gurobi with an appropriate
     sc:url "https://github.com/lihuamei/DeconPeaker" .
 
 <https://bio.tools/deconrnaseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0099 ;
@@ -163171,7 +157804,7 @@ To run DeCoDe, you will need a local installation of Gurobi with an appropriate
     biotools:primaryContact "Ting Gong" .
 
 <https://bio.tools/deconseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3174,
@@ -163188,7 +157821,7 @@ To run DeCoDe, you will need a local installation of Gurobi with an appropriate
         "Rob Edwards" .
 
 <https://bio.tools/deconstruct> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0166 ;
@@ -163207,7 +157840,7 @@ To run DeCoDe, you will need a local installation of Gurobi with an appropriate
     biotools:primaryContact "DEJAN VINKOVIĆ" .
 
 <https://bio.tools/deconstructsigs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0654,
@@ -163227,7 +157860,7 @@ To run DeCoDe, you will need a local installation of Gurobi with an appropriate
     biotools:primaryContact "Rachel Rosenthal" .
 
 <https://bio.tools/decont> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0622,
@@ -163243,7 +157876,7 @@ To run DeCoDe, you will need a local installation of Gurobi with an appropriate
     sc:url "https://github.com/ciceklab/DECoNT" .
 
 <https://bio.tools/decontam> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3168,
         edam:topic_3174,
@@ -163264,14 +157897,14 @@ To run DeCoDe, you will need a local installation of Gurobi with an appropriate
 
 <https://bio.tools/decontools> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3654" ;
+            sc:name "Mass spectrometry spectra" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0944" ;
-            sc:name "Peptide mass fingerprint" ;
-            sc:sameAs "http://edamontology.org/data_0944" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0944" ;
+            sc:encodingFormat "http://edamontology.org/format_1637" ;
+            sc:name "Peptide mass fingerprint" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -163294,7 +157927,7 @@ To run DeCoDe, you will need a local installation of Gurobi with an appropriate
     sc:url "http://omics.pnl.gov/software/DeconTools.php" .
 
 <https://bio.tools/deconvolution-ultrasound-imaging> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -163312,7 +157945,7 @@ To run DeCoDe, you will need a local installation of Gurobi with an appropriate
     biotools:primaryContact <https://orcid.org/0000-0001-7170-3772> .
 
 <https://bio.tools/deconvolution_estimate_immune_cell_subsets> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0625,
@@ -163336,7 +157969,7 @@ The tool is designed to estimate the fractions of immune cells from the expressi
     sc:url "https://github.com/holiday01/deconvolution-to-estimate-immune-cell-subsets" .
 
 <https://bio.tools/deconvtest> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3168,
@@ -163353,7 +157986,7 @@ The tool is designed to estimate the fractions of immune cells from the expressi
     sc:url "https://applied-systems-biology.github.io/DeconvTest/" .
 
 <https://bio.tools/decopath> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -163370,7 +158003,7 @@ The tool is designed to estimate the fractions of immune cells from the expressi
         <https://orcid.org/0000-0002-9858-3755> .
 
 <https://bio.tools/decorate> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3169,
@@ -163387,7 +158020,7 @@ The tool is designed to estimate the fractions of immune cells from the expressi
     sc:url "https://github.com/GabrielHoffman/decorate" .
 
 <https://bio.tools/decostar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0622,
@@ -163404,8 +158037,50 @@ The tool is designed to estimate the fractions of immune cells from the expressi
     sc:url "http://pbil.univ-lyon1.fr/software/DeCoSTAR/" ;
     biotools:primaryContact "Eric Tannier" .
 
+<https://bio.tools/decosus> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0625,
+        edam:topic_2229,
+        edam:topic_3170,
+        edam:topic_3934 ;
+    sc:citation <https://doi.org/10.3389/FGENE.2022.802838>,
+        "pmcid:PMC9011041",
+        "pubmed:35432466" ;
+    sc:description "Decosus, an R package that integrates seven methods and signatures for deconvoluting cell types from gene expression profiles (GEP)" ;
+    sc:featureList edam:operation_0314,
+        edam:operation_3435,
+        edam:operation_3629 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "Decosus" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://github.com/caanene1/Decosus" .
+
+<https://bio.tools/decoupler> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_2269,
+        edam:topic_3308,
+        edam:topic_3361 ;
+    sc:citation <https://doi.org/10.1093/bioadv/vbac016> ;
+    sc:description "Ensemble of computational methods to infer biological activities from omics data." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_2422 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "decoupleR" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://www.bioconductor.org/packages/release/bioc/manuals/decoupleR/man/decoupleR.pdf> ;
+    sc:url "https://github.com/saezlab/decoupleR_manuscript" .
+
 <https://bio.tools/decrease_redundancy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -163423,7 +158098,7 @@ The tool is designed to estimate the fractions of immune cells from the expressi
     biotools:primaryContact "Cedric Notredame" .
 
 <https://bio.tools/decres> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Script" ;
     sc:applicationSubCategory edam:topic_0749 ;
@@ -163439,7 +158114,7 @@ The tool is designed to estimate the fractions of immune cells from the expressi
     biotools:primaryContact "Wyeth W. WassermanEmail author" .
 
 <https://bio.tools/decrippter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0114,
         edam:topic_0154,
@@ -163467,14 +158142,12 @@ Nr of operons with known RiPP domains.""" ;
 
 <https://bio.tools/decryptor> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:name "Mass spectrometry spectra" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2762" ;
-            sc:name "Sequence signature report" ;
-            sc:sameAs "http://edamontology.org/data_2762" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2762" ;
+            sc:name "Sequence signature report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3325,
@@ -163493,8 +158166,30 @@ Nr of operons with known RiPP domains.""" ;
     biotools:primaryContact "Decryptor support",
         "Jana Vrbková" .
 
+<https://bio.tools/decs> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0099,
+        edam:topic_0203,
+        edam:topic_2229,
+        edam:topic_3170,
+        edam:topic_3517 ;
+    sc:citation <https://doi.org/10.1016/J.GPB.2022.04.001>,
+        "pubmed:35470070" ;
+    sc:description "A tool for systematic cell type annotations of single-cell RNA sequencing data among human tissues." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_3435,
+        edam:operation_3501 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "deCS" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/bsml320/deCS" .
+
 <https://bio.tools/dedal> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0602,
@@ -163512,7 +158207,7 @@ Nr of operons with known RiPP domains.""" ;
     biotools:primaryContact "Andrei Zinovyev" .
 
 <https://bio.tools/deds> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3518 ;
@@ -163529,8 +158224,23 @@ Nr of operons with known RiPP domains.""" ;
     sc:url "http://bioconductor.org/packages/release/bioc/html/DEDS.html" ;
     biotools:primaryContact "Yuanyuan Xiao" .
 
+<https://bio.tools/deemd> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workflow" ;
+    sc:applicationSubCategory edam:topic_0602,
+        edam:topic_2229,
+        edam:topic_3383,
+        edam:topic_3384,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1109/TMI.2022.3178523>,
+        "pubmed:35622798" ;
+    sc:description "DEEMD: a computational pipeline using deep neural network models within a multiple instance learning framework, to identify putative treatments effective against SARS-CoV-2 based on morphological analysis of the publicly available RxRx19a dataset." ;
+    sc:license "Not licensed" ;
+    sc:name "DEEMD" ;
+    sc:url "http://www.github.com/Sadegh-Saberian/DEEMD" .
+
 <https://bio.tools/deep> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0203,
@@ -163551,7 +158261,7 @@ Nr of operons with known RiPP domains.""" ;
     biotools:primaryContact "Martin Haubrock" .
 
 <https://bio.tools/deep-4mcw2v> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3474,
         edam:topic_3512 ;
@@ -163565,7 +158275,7 @@ Nr of operons with known RiPP domains.""" ;
     sc:url "https://github.com/linDing-groups/Deep-4mCW2V" .
 
 <https://bio.tools/deep-abppred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -163581,8 +158291,47 @@ Nr of operons with known RiPP domains.""" ;
     biotools:primaryContact "Sameer Shrivastava",
         "Sanjay Kumar Singh" .
 
+<https://bio.tools/deep-afppred> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0621,
+        edam:topic_0634,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1093/BIB/BBAB422>,
+        "pubmed:34670278" ;
+    sc:description "Identifying novel antifungal peptides using pretrained embeddings from seq2vec with 1DCNN-BiLSTM" ;
+    sc:featureList edam:operation_0239,
+        edam:operation_0303,
+        edam:operation_0407 ;
+    sc:isAccessibleForFree true ;
+    sc:name "Deep-AFPpred" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://afppred.anvil.app/" .
+
+<https://bio.tools/deep-b3> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_3336,
+        edam:topic_3373,
+        edam:topic_3382 ;
+    sc:citation <https://doi.org/10.1093/BIB/BBAC357>,
+        "pubmed:36002937" ;
+    sc:description "A deep learning–based multi-model framework model, called Deep-B3, to predict the BBB permeability of candidate compounds." ;
+    sc:isAccessibleForFree true ;
+    sc:license "Other" ;
+    sc:name "Deep-B3" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <http://cbcb.cdutcm.edu.cn/deepb3/document/> ;
+    sc:url "http://cbcb.cdutcm.edu.cn/deepb3/" .
+
 <https://bio.tools/deep-covid> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3384,
         edam:topic_3452,
@@ -163597,7 +158346,7 @@ Nr of operons with known RiPP domains.""" ;
     sc:url "https://github.com/shervinmin/DeepCovid" .
 
 <https://bio.tools/deep-drm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0634,
@@ -163614,7 +158363,7 @@ Nr of operons with known RiPP domains.""" ;
     sc:url "https://github.com/zty2009/GPDNN-for-Identify-ing-Disease-related-Metabolites" .
 
 <https://bio.tools/deep-framework> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3382,
@@ -163633,7 +158382,7 @@ Nr of operons with known RiPP domains.""" ;
     sc:url "https://github.com/crs4/deep_framework" .
 
 <https://bio.tools/deep-kcr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0601,
         edam:topic_0621,
@@ -163649,7 +158398,7 @@ Nr of operons with known RiPP domains.""" ;
     sc:url "http://lin-group.cn/server/Deep-Kcr" .
 
 <https://bio.tools/deep-loop> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_0749,
@@ -163664,7 +158413,7 @@ Nr of operons with known RiPP domains.""" ;
     sc:url "https://github.com/linDing-group/Deep-loop" .
 
 <https://bio.tools/deep-pla> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0634,
@@ -163681,7 +158430,7 @@ Nr of operons with known RiPP domains.""" ;
     sc:url "http://deeppla.cancerbio.info" .
 
 <https://bio.tools/deep-retinal-classification> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -163698,7 +158447,7 @@ Nr of operons with known RiPP domains.""" ;
     biotools:primaryContact "Mohamed Elsayed Elawady" .
 
 <https://bio.tools/deep-vessel-tracking> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -163714,7 +158463,7 @@ Nr of operons with known RiPP domains.""" ;
     biotools:primaryContact "Aaron Wu" .
 
 <https://bio.tools/deep4mc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3295,
@@ -163729,7 +158478,7 @@ Nr of operons with known RiPP domains.""" ;
     sc:url "https://bioinfo.uth.edu/Deep4mC" .
 
 <https://bio.tools/deep4mcpred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3295,
@@ -163743,8 +158492,27 @@ Nr of operons with known RiPP domains.""" ;
     sc:name "Deep4mcPred" ;
     sc:url "http://server.malab.cn/Deep4mcPred" .
 
+<https://bio.tools/deep6mapred> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0621,
+        edam:topic_0654,
+        edam:topic_0780,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1016/J.YMETH.2022.04.011>,
+        "pubmed:35477057" ;
+    sc:description "A CNN and Bi-LSTM-based deep learning method for predicting DNA N6-methyladenosine sites across plant species." ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "Deep6mAPred" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://106.13.196.152:7001/" .
+
 <https://bio.tools/deepDR> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3336,
         edam:topic_3373,
@@ -163763,7 +158531,7 @@ Nr of operons with known RiPP domains.""" ;
     biotools:primaryContact "Feixiong Cheng" .
 
 <https://bio.tools/deepRAM> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3169,
         edam:topic_3474,
@@ -163777,7 +158545,7 @@ Nr of operons with known RiPP domains.""" ;
     sc:url "https://github.com/MedChaabane/deepRAM" .
 
 <https://bio.tools/deep_gonet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Workbench" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -163798,15 +158566,33 @@ Nr of operons with known RiPP domains.""" ;
     sc:operatingSystem "Linux" ;
     sc:url "https://forge.ibisc.univ-evry.fr/vbourgeais/DeepGONet.git" .
 
+<https://bio.tools/deep_hyperscanning> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workflow" ;
+    sc:applicationSubCategory edam:topic_0769,
+        edam:topic_2815,
+        edam:topic_3304 ;
+    sc:citation <https://doi.org/10.1016/J.DCN.2022.101104>,
+        "pmcid:PMC8980555",
+        "pubmed:35367895" ;
+    sc:description "A dual EEG pipeline for developmental hyperscanning studies." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_2428,
+        edam:operation_3454 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "DEEP" ;
+    sc:url "https://github.com/dmatthes1982/MPI_CBS-DEEP" .
+
 <https://bio.tools/deep_transfer_graph_convolutional_network> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "We develop a novel deep learning approach for multi-stage malaria parasites recognition in blood smear images using Deep Transfer Graph Convolutional Network (DTGCN). And this work is the first application of GCN on multi-stage malaria parasites recognition in blood smear images. The proposed DTGCN model is based on unsupervised learning by transferring knowledge learnt from source images that contain the discriminative morphology character-istics of multi-stage malaria parasites. These transferred information guarantees the effectiveness on the target parasites recognition." ;
     sc:name "Deep Transfer Graph Convolutional Network" ;
     sc:softwareHelp <https://github.com/senli2018/DTGCN> ;
     sc:url "https://github.com/senli2018/DTGCN" .
 
 <https://bio.tools/deepac-live> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Plug-in" ;
     sc:applicationSubCategory edam:topic_0102,
@@ -163822,7 +158608,7 @@ Nr of operons with known RiPP domains.""" ;
     sc:url "https://gitlab.com/dacs-hpi/deepac-live" .
 
 <https://bio.tools/deepac4c> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_3382,
         edam:topic_3474,
@@ -163836,8 +158622,28 @@ Nr of operons with known RiPP domains.""" ;
     sc:name "DeepAc4C" ;
     sc:url "http://lab.malab.cn/~wangchao/softs/DeepAc4C/" .
 
+<https://bio.tools/deepacsa> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0611,
+        edam:topic_3068,
+        edam:topic_3444,
+        edam:topic_3452,
+        edam:topic_3954 ;
+    sc:citation <https://doi.org/10.1101/2021.12.27.21268258> ;
+    sc:description "Automatic segmentation of anatomical cross-sectional area in ultrasound images of human lower limb muscles using deep learning." ;
+    sc:featureList edam:operation_2422,
+        edam:operation_3283,
+        edam:operation_3443 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "DeepACSA" ;
+    sc:operatingSystem "Mac",
+        "Windows" ;
+    sc:url "https://github.com/PaulRitsche/DeepACSA.git" .
+
 <https://bio.tools/deepae> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0634,
@@ -163856,7 +158662,7 @@ Nr of operons with known RiPP domains.""" ;
     sc:url "https://github.com/sourcescodes/DeepAE" .
 
 <https://bio.tools/deepanis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0160,
@@ -163876,7 +158682,7 @@ Nr of operons with known RiPP domains.""" ;
     sc:url "https://biomed.nscc-gz.cn:9094/apps/DeepANIS" .
 
 <https://bio.tools/deepantigen> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0199,
@@ -163890,7 +158696,7 @@ Nr of operons with known RiPP domains.""" ;
     sc:url "http://yishi.sjtu.edu.cn/deepAntigen" .
 
 <https://bio.tools/deepaps> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_3298,
@@ -163908,7 +158714,7 @@ Nr of operons with known RiPP domains.""" ;
     sc:url "https://github.com/lauzingaretti/deepaps" .
 
 <https://bio.tools/deepark> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0621,
@@ -163926,8 +158732,25 @@ Nr of operons with known RiPP domains.""" ;
     sc:url "https://DeepArk.princeton.edu" ;
     biotools:primaryContact "Olga G Troyanskaya" .
 
+<https://bio.tools/deepavppred> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_3336,
+        edam:topic_3397,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1109/JBHI.2021.3130825>,
+        "pubmed:34822333" ;
+    sc:description "Artificial intelligence driven discovery of peptide drugs for viral infections." ;
+    sc:isAccessibleForFree true ;
+    sc:name "Deep-AVPpred" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://deep-avppred.anvil.app" .
+
 <https://bio.tools/deepbase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0102,
@@ -163947,8 +158770,46 @@ Nr of operons with known RiPP domains.""" ;
     sc:softwareHelp <http://rna.sysu.edu.cn/deepBase/index.php> ;
     sc:url "http://rna.sysu.edu.cn/deepBase/" .
 
+<https://bio.tools/deepbhvtracking> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_3300,
+        edam:topic_3304,
+        edam:topic_3382,
+        edam:topic_3474,
+        edam:topic_3500 ;
+    sc:citation <https://doi.org/10.3389/FNBEH.2021.750894>,
+        "pmcid:PMC8581673",
+        "pubmed:34776893" ;
+    sc:description "A Novel Behavior Tracking Method for Laboratory Animals Based on Deep Learning." ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-2.0" ;
+    sc:name "DeepBhvTracking" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/SunGL001/DeepBhvTracking" .
+
+<https://bio.tools/deepbindbc> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_2275,
+        edam:topic_2830,
+        edam:topic_3336 ;
+    sc:citation <https://doi.org/10.1016/J.YMETH.2022.07.009>,
+        "pubmed:35878751" ;
+    sc:description "DeepBindBC is a deep learning based binary classifier for identifying native-like protein-ligand complexes." ;
+    sc:featureList edam:operation_2476,
+        edam:operation_3938 ;
+    sc:license "Other" ;
+    sc:name "DeepBindBC" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://cbblab.siat.ac.cn/DeepBindBC/index.php" .
+
 <https://bio.tools/deepbindpoc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0209,
@@ -163966,7 +158827,7 @@ Nr of operons with known RiPP domains.""" ;
     sc:url "http://cbblab.siat.ac.cn/DeepBindPoc/index.php" .
 
 <https://bio.tools/deepbiome> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0637,
         edam:topic_3293,
@@ -163984,7 +158845,7 @@ Nr of operons with known RiPP domains.""" ;
     sc:url "https://github.com/Young-won/DeepBiome" .
 
 <https://bio.tools/deepbl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0623,
@@ -164000,7 +158861,7 @@ Nr of operons with known RiPP domains.""" ;
     sc:url "http://deepbl.erc.monash.edu.au/" .
 
 <https://bio.tools/deepblink> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3315,
         edam:topic_3382,
@@ -164016,7 +158877,7 @@ Nr of operons with known RiPP domains.""" ;
     sc:url "https://github.com/BBQuercus/deepBlink" .
 
 <https://bio.tools/deepblue> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web API",
         "Web application" ;
@@ -164043,7 +158904,7 @@ Nr of operons with known RiPP domains.""" ;
     biotools:primaryContact "Felipe Albrecht" .
 
 <https://bio.tools/deepbluer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3295 ;
@@ -164064,7 +158925,7 @@ Nr of operons with known RiPP domains.""" ;
         "Felipe Albrecht" .
 
 <https://bio.tools/deepbound> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3170,
@@ -164080,7 +158941,7 @@ Nr of operons with known RiPP domains.""" ;
     biotools:primaryContact "Support" .
 
 <https://bio.tools/deepbrainnet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3304,
         edam:topic_3384,
@@ -164096,8 +158957,28 @@ Nr of operons with known RiPP domains.""" ;
     sc:name "DeepBrainNet" ;
     sc:url "https://github.com/vishnubashyam/DeepBrainNet" .
 
+<https://bio.tools/deepbsa> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Desktop application",
+        "Workflow" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_0780,
+        edam:topic_3500 ;
+    sc:citation <https://doi.org/10.1016/J.MOLP.2022.08.004>,
+        "pubmed:35996754" ;
+    sc:description "DeepBSA is a bulked segregant analysis (BSA) software for the dissection of complex traits. Two algorithms are developed in DeepBSA named deep learning (DL) and k-value (K), which can be applied on different number (at least 2) of bulked pools." ;
+    sc:featureList edam:operation_0282,
+        edam:operation_3799 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "DeepBSA" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/lizhao007/DeepBSA" .
+
 <https://bio.tools/deepc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0654,
@@ -164116,8 +158997,68 @@ Nr of operons with known RiPP domains.""" ;
     sc:name "deepC" ;
     sc:url "https://github.com/rschwess/deepC" .
 
+<https://bio.tools/deepcage> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workbench" ;
+    sc:applicationSubCategory edam:topic_0749,
+        edam:topic_3168,
+        edam:topic_3474,
+        edam:topic_3940 ;
+    sc:citation <https://doi.org/10.1016/J.GPB.2021.08.015>,
+        "pubmed:35293310" ;
+    sc:description "Incorporating transcription factors in genome-wide prediction of chromatin accessibility." ;
+    sc:featureList edam:operation_0438,
+        edam:operation_3226,
+        edam:operation_3659 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "DeepCAGE" ;
+    sc:operatingSystem "Linux",
+        "Mac" ;
+    sc:url "https://github.com/kimmo1019/DeepCAGE" .
+
+<https://bio.tools/deepcapkcr> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Desktop application" ;
+    sc:applicationSubCategory edam:topic_0121,
+        edam:topic_0160,
+        edam:topic_0601,
+        edam:topic_3295,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1093/BIB/BBAB492>,
+        "pubmed:34882222" ;
+    sc:description "Accurate identification and investigation of protein lysine crotonylation sites based on capsule network." ;
+    sc:featureList edam:operation_0417,
+        edam:operation_0564,
+        edam:operation_3767 ;
+    sc:isAccessibleForFree true ;
+    sc:name "DeepCap-Kcr" ;
+    sc:url "https://github.com/Jhabindra-bioinfo/DeepCap-Kcr" .
+
+<https://bio.tools/deepcarc> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workbench" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_2840,
+        edam:topic_3314,
+        edam:topic_3373,
+        edam:topic_3500 ;
+    sc:citation <https://doi.org/10.3389/FRAI.2021.757780>,
+        "pmcid:PMC8636933",
+        "pubmed:34870186" ;
+    sc:description "Deep Learning-Powered Carcinogenicity Prediction Using Model-Level Representation." ;
+    sc:featureList edam:operation_3799,
+        edam:operation_3935,
+        edam:operation_3938 ;
+    sc:isAccessibleForFree true ;
+    sc:name "DeepCarc" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/TingLi2016/DeepCarc" .
+
 <https://bio.tools/deepcda> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3336,
@@ -164132,7 +159073,7 @@ Nr of operons with known RiPP domains.""" ;
     sc:url "https://github.com/LBBSoft/DeepCDA" .
 
 <https://bio.tools/deepcdr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0208,
@@ -164152,8 +159093,25 @@ This work has been accepted to ECCB2020 and was also published in the journal Bi
     sc:name "DeepCDR" ;
     sc:url "https://github.com/kimmo1019/DeepCDR" .
 
+<https://bio.tools/deepcel0> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_3047,
+        edam:topic_3382 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAB808>,
+        "pubmed:34864887" ;
+    sc:description "DeepCEL0 for 2D Single Molecule Localization in Fluorescence Microscopy." ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "DeepCEL0" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/sedaboni/DeepCEL0" .
+
 <https://bio.tools/deepcell> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0625,
@@ -164178,7 +159136,7 @@ Free document hosting provided by Read the Docs""" ;
     sc:url "https://www.deepcell.org" .
 
 <https://bio.tools/deepcervix> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_2640,
@@ -164191,7 +159149,7 @@ Free document hosting provided by Read the Docs""" ;
     sc:url "https://github.com/Mamunur-20/DeepCervix" .
 
 <https://bio.tools/deepcirgo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0128,
@@ -164209,7 +159167,7 @@ Free document hosting provided by Read the Docs""" ;
     sc:url "http://denglab.org/DeepciRGO/" .
 
 <https://bio.tools/deepcla> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_0749,
@@ -164224,8 +159182,29 @@ Free document hosting provided by Read the Docs""" ;
     sc:name "DeepCLA" ;
     sc:url "https://github.com/ZhangZhang89/DeepCLA" .
 
+<https://bio.tools/deepcme> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workbench" ;
+    sc:applicationSubCategory edam:topic_2269,
+        edam:topic_3299,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1371/JOURNAL.PCBI.1009623>,
+        "pmcid:PMC8687598",
+        "pubmed:34879062" ;
+    sc:description "A deep learning framework for computing solution statistics of the chemical master equation." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_2426,
+        edam:operation_3927 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "DeepCME" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/ankitgupta83/DeepCME" .
+
 <https://bio.tools/deepcnv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2885,
         edam:topic_3474,
@@ -164239,7 +159218,7 @@ Free document hosting provided by Read the Docs""" ;
     sc:url "https://github.com/CAG-CNV/DeepCNV" .
 
 <https://bio.tools/deepcob> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0780,
         edam:topic_3298,
         edam:topic_3382,
@@ -164255,7 +159234,7 @@ Free document hosting provided by Read the Docs""" ;
     biotools:primaryContact <https://orcid.org/0000-0001-5129-895X> .
 
 <https://bio.tools/deepcomplex> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
@@ -164279,7 +159258,7 @@ Free document hosting provided by Read the Docs""" ;
     sc:url "http://tulip.rnet.missouri.edu/deepcomplex/web_index.html" .
 
 <https://bio.tools/deepcoy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2275,
@@ -164297,7 +159276,7 @@ Free document hosting provided by Read the Docs""" ;
     sc:url "https://github.com/oxpig/DeepCoy" .
 
 <https://bio.tools/deepcpi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0202,
@@ -164315,7 +159294,7 @@ Free document hosting provided by Read the Docs""" ;
     sc:url "https://github.com/FangpingWan/DeepCPI" .
 
 <https://bio.tools/deepcso> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -164331,7 +159310,7 @@ Free document hosting provided by Read the Docs""" ;
     sc:url "http://www.bioinfogo.org/DeepCSO" .
 
 <https://bio.tools/deepcys> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0166,
         edam:topic_3474,
@@ -164347,7 +159326,7 @@ Free document hosting provided by Read the Docs""" ;
     sc:url "https://deepcys.herokuapp.com/" .
 
 <https://bio.tools/deepd2v> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0749,
@@ -164368,7 +159347,7 @@ Free document hosting provided by Read the Docs""" ;
     sc:url "https://github.com/Sparkleiii/DeepD2V" .
 
 <https://bio.tools/deepdds> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2640,
@@ -164384,7 +159363,7 @@ Free document hosting provided by Read the Docs""" ;
     sc:url "https://github.com/Sinwang404/DeepDDS/tree/master" .
 
 <https://bio.tools/deepdigest> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -164404,7 +159383,7 @@ Free document hosting provided by Read the Docs""" ;
     sc:url "http://fugroup.amss.ac.cn/software/DeepDigest/DeepDigest.html" .
 
 <https://bio.tools/deepdili> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0202,
         edam:topic_3373,
@@ -164418,8 +159397,32 @@ Free document hosting provided by Read the Docs""" ;
     sc:name "DeepDILI" ;
     sc:url "https://github.com/TingLi2016/DeepDILI" .
 
+<https://bio.tools/deepdisobind> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0077,
+        edam:topic_0121,
+        edam:topic_0128,
+        edam:topic_0621,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1093/BIB/BBAB521>,
+        "pubmed:34905768" ;
+    sc:description "Accurate prediction of RNA-, DNA- and protein-binding intrinsically disordered residues with deep multi-task learning." ;
+    sc:featureList edam:operation_0272,
+        edam:operation_0470,
+        edam:operation_2492,
+        edam:operation_3901,
+        edam:operation_3904 ;
+    sc:isAccessibleForFree true ;
+    sc:name "DeepDISOBind" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://www.csuligroup.com/DeepDISOBind/" .
+
 <https://bio.tools/deepdist> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_2814,
@@ -164435,7 +159438,7 @@ Free document hosting provided by Read the Docs""" ;
     sc:url "https://github.com/multicom-toolbox/deepdist" .
 
 <https://bio.tools/deepdrk> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0208,
         edam:topic_2640,
@@ -164451,8 +159454,17 @@ Free document hosting provided by Read the Docs""" ;
     sc:name "DeepDRK" ;
     sc:url "https://github.com/wangyc82/DeepDRK" .
 
+<https://bio.tools/deepdrpbind> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:description "DeepDRPBind is developed to predict DNA, RNA and protein binding residues in intrinsically disordered protein sequence." ;
+    sc:isAccessibleForFree true ;
+    sc:name "DeepDRPBind" ;
+    sc:operatingSystem "Linux" ;
+    sc:url "https://github.com/roneshsharma/DNA-RNA-Protein-Binding/wiki" .
+
 <https://bio.tools/deepdrug> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0154,
         edam:topic_0202,
@@ -164467,7 +159479,7 @@ Free document hosting provided by Read the Docs""" ;
     sc:url "https://github.com/wanwenzeng/deepdrug" .
 
 <https://bio.tools/deepdtaf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2275,
@@ -164486,7 +159498,7 @@ Free document hosting provided by Read the Docs""" ;
     biotools:primaryContact <https://orcid.org/0000-0002-0188-1394> .
 
 <https://bio.tools/deepeca> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0082,
@@ -164507,7 +159519,7 @@ Free document hosting provided by Read the Docs""" ;
     sc:url "https://github.com/tomiilab/DeepECA" .
 
 <https://bio.tools/deepefflux> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0140,
@@ -164527,7 +159539,7 @@ Free document hosting provided by Read the Docs""" ;
     biotools:primaryContact "Yu-Yen Ou" .
 
 <https://bio.tools/deepem> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0611,
         edam:topic_3474 ;
@@ -164542,7 +159554,7 @@ Free document hosting provided by Read the Docs""" ;
     biotools:primaryContact "Youdong Mao" .
 
 <https://bio.tools/deepethogram> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0202,
@@ -164558,7 +159570,7 @@ Free document hosting provided by Read the Docs""" ;
     sc:url "https://github.com/jbohnslav/deepethogram" .
 
 <https://bio.tools/deepeventmine> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0218,
         edam:topic_0602,
@@ -164576,7 +159588,7 @@ Free document hosting provided by Read the Docs""" ;
     sc:url "https://github.com/aistairc/DeepEventMine" .
 
 <https://bio.tools/deepfeature> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0749,
@@ -164596,7 +159608,7 @@ Free document hosting provided by Read the Docs""" ;
     sc:url "https://alok-ai-lab.github.io/deepfeature/" .
 
 <https://bio.tools/deepfilter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -164615,8 +159627,46 @@ Free document hosting provided by Read the Docs""" ;
     sc:operatingSystem "Linux" ;
     sc:url "https://github.com/Biocomputing-Research-Group/DeepFilter" .
 
+<https://bio.tools/deepflu> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_3360,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1016/J.CMPB.2021.106495>,
+        "pubmed:34798406" ;
+    sc:description "A deep learning approach for forecasting symptomatic influenza A infection based on pre-exposure gene expression." ;
+    sc:featureList edam:operation_0252 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "DeepFlu" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/ntou-compbio/DeepFlu" .
+
+<https://bio.tools/deepfoci> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Desktop application" ;
+    sc:applicationSubCategory edam:topic_0654,
+        edam:topic_3295,
+        edam:topic_3382,
+        edam:topic_3474,
+        edam:topic_3934 ;
+    sc:citation <https://doi.org/10.1016/J.CSBJ.2021.11.019>,
+        "pmcid:PMC8668444",
+        "pubmed:34976305" ;
+    sc:description "Deep learning-based algorithm for fast automatic analysis of DNA double-strand break ionizing radiation-induced foci." ;
+    sc:featureList edam:operation_3443,
+        edam:operation_3799,
+        edam:operation_3891 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "DeepFoci" ;
+    sc:url "https://github.com/tomasvicar/DeepFoci" .
+
 <https://bio.tools/deepforest> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_3382,
@@ -164633,7 +159683,7 @@ Free document hosting provided by Read the Docs""" ;
     sc:url "https://pypi.org/project/deepforest/" .
 
 <https://bio.tools/deepfplearn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2840,
@@ -164654,7 +159704,7 @@ Free document hosting provided by Read the Docs""" ;
     sc:url "https://github.com/yigbt/deepFPlearn" .
 
 <https://bio.tools/deepfrag> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3336,
         edam:topic_3474 ;
@@ -164666,7 +159716,7 @@ Free document hosting provided by Read the Docs""" ;
     sc:url "http://durrantlab.com/deepfragmodel" .
 
 <https://bio.tools/deepfrag-k> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0130,
@@ -164685,7 +159735,7 @@ Free document hosting provided by Read the Docs""" ;
     sc:url "https://github.com/yaohangli/DeepFragK" .
 
 <https://bio.tools/deepfri> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0821,
@@ -164708,7 +159758,7 @@ Free document hosting provided by Read the Docs""" ;
         <https://orcid.org/0000-0003-4354-7906> .
 
 <https://bio.tools/deepfun> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0749,
@@ -164728,7 +159778,7 @@ Free document hosting provided by Read the Docs""" ;
         <https://orcid.org/0000-0003-4523-4153> .
 
 <https://bio.tools/deepg4> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_0769,
@@ -164743,8 +159793,31 @@ Free document hosting provided by Read the Docs""" ;
     sc:name "DeepG4" ;
     sc:url "https://github.com/morphos30/DeepG4" .
 
+<https://bio.tools/deepgengrep> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script",
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+    sc:applicationSubCategory edam:topic_0621,
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+        edam:topic_3320,
+        edam:topic_3474,
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+    sc:license "Other" ;
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+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://bigdata.biocie.cn/deepgengrep/home" .
+
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-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
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     sc:applicationSubCategory edam:topic_0602,
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 <https://bio.tools/deepgoa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
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 <https://bio.tools/deepgoweb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "SPARQL endpoint",
         "Web API",
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     sc:url "https://deepgo.cbrc.kaust.edu.sa/" ;
     biotools:primaryContact <https://orcid.org/0000-0003-1710-1820> .
 
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+    sc:additionalType "Script" ;
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+        edam:topic_3474 ;
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+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://github.com/bio-ontology-research-group/deepgozero" .
+
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+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
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     sc:name "DeepGraphGO" ;
     sc:url "https://github.com/yourh/DeepGraphGO" .
 
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+    sc:additionalType "Web application" ;
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+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://deepgraphh.ahujalab.iiitd.edu.in/" .
+
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+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
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     sc:applicationSubCategory edam:topic_0602,
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 <https://bio.tools/deepgrp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
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 <https://bio.tools/deeph3> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
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     sc:applicationSubCategory edam:topic_0082,
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 <https://bio.tools/deephage> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
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 <https://bio.tools/deephagetp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
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 <https://bio.tools/deephase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script",
         "Web application" ;
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     biotools:primaryContact "Tuomas P. J. Knowles" .
 
 <https://bio.tools/deephe> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
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     sc:url "https://github.com/xzhang2016/DeepHE" .
 
 <https://bio.tools/deephic> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
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@@ -164962,8 +160076,26 @@ Free document hosting provided by Read the Docs""" ;
     sc:name "DeepHiC" ;
     sc:url "http://sysomics.com/deephic" .
 
+<https://bio.tools/deephiscom> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
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+        edam:operation_3661,
+        edam:operation_3928 ;
+    sc:license "Not licensed" ;
+    sc:name "DeepHisCoM" ;
+    sc:url "https://github.com/chanwoo-park-official/DeepHisCoM" .
+
 <https://bio.tools/deephistoclass> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
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 <https://bio.tools/deephit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
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     sc:url "https://bitbucket.org/krictai/deephit" .
 
 <https://bio.tools/deephomo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0128,
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     sc:name "DeepHomo" ;
     sc:url "http://huanglab.phys.hust.edu.cn/DeepHomo/" .
 
+<https://bio.tools/deephos> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Desktop application" ;
+    sc:applicationSubCategory edam:topic_0601,
+        edam:topic_3520,
+        edam:topic_3922 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC280>,
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+        edam:operation_3649,
+        edam:operation_3799,
+        edam:operation_3801 ;
+    sc:license "Not licensed" ;
+    sc:name "Deephos" ;
+    sc:url "https://github.com/seungjinna/deephos" .
+
 <https://bio.tools/deephost> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
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     sc:operatingSystem "Linux" ;
     sc:url "https://github.com/deepomicslab/DeepHost" .
 
+<https://bio.tools/deephpi> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0128,
+        edam:topic_0154,
+        edam:topic_3324,
+        edam:topic_3474,
+        edam:topic_3500 ;
+    sc:citation <https://doi.org/10.1093/BIB/BBAC125>,
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+    sc:description "Adeep learning platform for accurate prediction and visualization of host-pathogen protein-protein interactions." ;
+    sc:featureList edam:operation_2492,
+        edam:operation_3461,
+        edam:operation_3925 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "deepHPI" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://bioinfo.usu.edu/deepHPI/" .
+
 <https://bio.tools/deephpv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_2640,
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     sc:name "DeepHPV" ;
     sc:url "https://github.com/JiuxingLiang/DeepHPV.git" .
 
+<https://bio.tools/deepidp-2l> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0082,
+        edam:topic_0102,
+        edam:topic_2828,
+        edam:topic_3538 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAB810>,
+        "pubmed:34864847" ;
+    sc:description "Tool for protein intrinsically disordered region prediction by combining convolutional attention network and hierarchical attention network." ;
+    sc:featureList edam:operation_0470,
+        edam:operation_3904,
+        edam:operation_3927 ;
+    sc:isAccessibleForFree true ;
+    sc:name "DeepIDP-2L" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://bliulab.net/DeepIDP-2L/" .
+
 <https://bio.tools/deepimagetranslator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0108,
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     sc:url "https://sourceforge.net/projects/deepimagetranslator/" .
 
 <https://bio.tools/deepimmuno> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2229,
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     sc:url "https://deepimmuno.herokuapp.com" .
 
 <https://bio.tools/deepip> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3474 ;
     sc:citation <https://doi.org/10.1109/TPAMI.2021.3088846>,
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     sc:url "https://github.com/kamwoh/DeepIPR" .
 
 <https://bio.tools/deepips> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0601,
@@ -165111,8 +160302,26 @@ Free document hosting provided by Read the Docs""" ;
         "Windows" ;
     sc:url "http://lin-group.cn/server/DeepIPs" .
 
+<https://bio.tools/deepkg> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0218,
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+        edam:topic_3474 ;
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+        "pubmed:34788369" ;
+    sc:description "An End-to-End Deep Learning-Based Workflow for Biomedical Knowledge Graph Extraction, Optimization and Applications." ;
+    sc:featureList edam:operation_0306 ;
+    sc:isAccessibleForFree true ;
+    sc:name "DeepKG" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://covidkg.ai" .
+
 <https://bio.tools/deepkhib> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0601,
         edam:topic_3474,
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 <https://bio.tools/deepkinzero> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
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     sc:name "DeepKinZero" ;
     sc:url "https://github.com/Tastanlab/DeepKinZero" .
 
+<https://bio.tools/deepkme> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
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+        edam:topic_0601,
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+        edam:operation_0417,
+        edam:operation_3755 ;
+    sc:isAccessibleForFree true ;
+    sc:name "DeepKme" ;
+    sc:url "https://github.com/guoyangzou/DeepKme" .
+
 <https://bio.tools/deeplc> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Protein sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
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-            sc:name "Peptide property" ;
-            sc:sameAs "http://edamontology.org/data_2979" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2979" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Peptide property" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -165171,8 +160399,28 @@ Free document hosting provided by Read the Docs""" ;
     sc:url "http://compomics.github.io/projects/DeepLC" ;
     biotools:primaryContact "CompOmics" .
 
+<https://bio.tools/deeplensnet> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workbench" ;
+    sc:applicationSubCategory edam:topic_3303,
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+        edam:topic_3474 ;
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+        edam:operation_3799 ;
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+    sc:license "Not licensed" ;
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+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/ncbi/deeplensnet" .
+
 <https://bio.tools/deepliif> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0108,
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     biotools:primaryContact <https://orcid.org/0000-0001-5030-9792> .
 
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+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workflow" ;
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+        "pubmed:35601486" ;
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+    sc:featureList edam:operation_0252,
+        edam:operation_3695,
+        edam:operation_3891 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Other" ;
+    sc:name "DeepLION" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/Bioinformatics7181/DeepLION" .
+
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-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library",
         "Web application" ;
@@ -165208,18 +160479,18 @@ Free document hosting provided by Read the Docs""" ;
 
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     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1233" ;
-            sc:name "Sequence set (protein)" ;
-            sc:sameAs "http://edamontology.org/data_1233" ] ;
+            sc:additionalType "http://edamontology.org/data_1233" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence set (protein)" ] ;
     bsc:output [ a bsct:FormalParameter ;
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-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ],
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
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         [ a bsct:FormalParameter ;
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-            sc:sameAs "http://edamontology.org/data_1277" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3603" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0080,
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     biotools:primaryContact "Henrik Nielsen" .
 
 <https://bio.tools/deeplpi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0128,
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@@ -165254,8 +160525,29 @@ Free document hosting provided by Read the Docs""" ;
     sc:name "DeepLPI" ;
     sc:url "https://github.com/dls03/DeepLPI" .
 
+<https://bio.tools/deeplucia> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0204,
+        edam:topic_0749,
+        edam:topic_2885,
+        edam:topic_3169,
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+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC373>,
+        "pubmed:35640981" ;
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+        edam:operation_0481,
+        edam:operation_2437 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "DeepLUCIA" ;
+    sc:operatingSystem "Linux",
+        "Mac" ;
+    sc:url "https://github.com/bcbl-kaist/DeepLUCIA" .
+
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-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0621,
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     sc:url "https://github.com/ucrbioinfo/DeeplyEssential" .
 
 <https://bio.tools/deeplytough> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
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     sc:applicationSubCategory edam:topic_2814,
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@@ -165286,8 +160578,25 @@ Free document hosting provided by Read the Docs""" ;
     sc:name "DeeplyTough" ;
     sc:url "https://github.com/BenevolentAI/DeeplyTough" .
 
+<https://bio.tools/deepm5c> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workbench" ;
+    sc:applicationSubCategory edam:topic_0091,
+        edam:topic_0099,
+        edam:topic_3295,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1016/J.YMTHE.2022.05.001>,
+        "pubmed:35526094" ;
+    sc:description "A deep-learning-based hybrid framework for identifying human RNA N5-methylcytosine sites using a stacking strategy." ;
+    sc:license "Not licensed" ;
+    sc:name "Deepm5C" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=35526094" .
+
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-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
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     sc:applicationSubCategory edam:topic_0154,
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     sc:url "https://transilico.com/" .
 
 <https://bio.tools/deepmanreg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
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     sc:applicationSubCategory edam:topic_0625,
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 <https://bio.tools/deepmel> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
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     sc:applicationSubCategory edam:topic_0199,
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@@ -165337,8 +160646,25 @@ Free document hosting provided by Read the Docs""" ;
     sc:name "DeepMEL" ;
     sc:url "http://kipoi.org/models/DeepMEL/" .
 
+<https://bio.tools/deepmgt-dti> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Desktop application" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_3336,
+        edam:topic_3373,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1016/J.COMPBIOMED.2022.105214>,
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+    sc:description "Transformer network incorporating multilayer graph information for Drug-Target interaction prediction." ;
+    sc:featureList edam:operation_3927,
+        edam:operation_3938 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "DeepMGT-DTI" ;
+    sc:url "https://github.com/zhangpl109/DeepMGT-DTI" .
+
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-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0769,
@@ -165354,7 +160680,7 @@ Free document hosting provided by Read the Docs""" ;
     sc:url "http://mib.helsinki.fi" .
 
 <https://bio.tools/deepmicrobes> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
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@@ -165372,7 +160698,7 @@ Free document hosting provided by Read the Docs""" ;
     sc:url "https://github.com/MicrobeLab/DeepMicrobes" .
 
 <https://bio.tools/deepmitodb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0140,
@@ -165390,7 +160716,7 @@ Free document hosting provided by Read the Docs""" ;
     sc:url "http://busca.biocomp.unibo.it/deepmitodb" .
 
 <https://bio.tools/deepmm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0082,
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@@ -165406,7 +160732,7 @@ Free document hosting provided by Read the Docs""" ;
     sc:url "https://github.com/JiahuaHe/DeepMM" .
 
 <https://bio.tools/deepmotifsyn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0203,
@@ -165422,7 +160748,7 @@ Free document hosting provided by Read the Docs""" ;
     biotools:primaryContact "Ka-Chun Wong" .
 
 <https://bio.tools/deepmp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0654,
@@ -165445,7 +160771,7 @@ Free document hosting provided by Read the Docs""" ;
     sc:url "http://github.com/pepebonet/DeepMP" .
 
 <https://bio.tools/deepn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0821,
         edam:topic_3168,
@@ -165460,7 +160786,7 @@ Free document hosting provided by Read the Docs""" ;
     sc:url "https://bioserver.iiita.ac.in/DeEPn/" .
 
 <https://bio.tools/deepnano-blitz> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
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@@ -165475,7 +160801,7 @@ Free document hosting provided by Read the Docs""" ;
     sc:url "https://github.com/fmfi-compbio/deepnano-blitz" .
 
 <https://bio.tools/deepnc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2269,
@@ -165489,8 +160815,30 @@ Free document hosting provided by Read the Docs""" ;
     sc:name "DeepNC" ;
     sc:url "https://github.com/congasix/DeepNC" .
 
+<https://bio.tools/deepnc_GNN_algorithms> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workbench" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_2258,
+        edam:topic_3336,
+        edam:topic_3400,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.7717/PEERJ.13163>,
+        "pmcid:PMC9107302",
+        "pubmed:35578674" ;
+    sc:description "A framework for drug-target interaction prediction with graph neural networks." ;
+    sc:featureList edam:operation_2428,
+        edam:operation_3436,
+        edam:operation_3927 ;
+    sc:license "Not licensed" ;
+    sc:name "DeepNC" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/thntran/DeepNC" .
+
 <https://bio.tools/deepncca> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3334,
@@ -165506,8 +160854,27 @@ Free document hosting provided by Read the Docs""" ;
     sc:url "https://github.com/plattenmichael/DeepnCCA/" ;
     biotools:primaryContact <https://orcid.org/0000-0001-6297-487X> .
 
+<https://bio.tools/deepnci> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Desktop application" ;
+    sc:applicationSubCategory edam:topic_0749,
+        edam:topic_3332,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1021/ACS.JCIM.1C01305>,
+        "pubmed:34958566" ;
+    sc:description "A multimodal deep learning model, DeepNCI, is proposed for improving noncovalent interactions (NCIs) calculated via density functional theory (DFT)." ;
+    sc:featureList edam:operation_0321,
+        edam:operation_0337,
+        edam:operation_3927 ;
+    sc:isAccessibleForFree true ;
+    sc:name "DeepNCI" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/wenzelee/DeepNCI" .
+
 <https://bio.tools/deepnd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -165522,8 +160889,31 @@ Free document hosting provided by Read the Docs""" ;
     sc:name "DeepND" ;
     sc:url "http://github.com/ciceklab/deepnd" .
 
+<https://bio.tools/deepnec> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Desktop application",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0821,
+        edam:topic_3174,
+        edam:topic_3474,
+        edam:topic_3810 ;
+    sc:citation <https://doi.org/10.1093/BIB/BBAC071>,
+        "pubmed:35325031" ;
+    sc:description "A novel alignment-free tool for the identification and classification of nitrogen biochemical network-related enzymes using deep learning." ;
+    sc:featureList edam:operation_0253,
+        edam:operation_3092,
+        edam:operation_3454 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "deepNEC" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://bioinfo.usu.edu/deepNEC/" .
+
 <https://bio.tools/deepnetbim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
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@@ -165542,7 +160932,7 @@ Free document hosting provided by Read the Docs""" ;
     biotools:primaryContact <https://orcid.org/0000-0003-4602-3227> .
 
 <https://bio.tools/deepneuro> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0605,
         edam:topic_3384,
@@ -165558,7 +160948,7 @@ A deep learning python package for neuroimaging data.""" ;
     sc:url "https://github.com/QTIM-Lab/DeepNeuro" .
 
 <https://bio.tools/deepnog> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
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@@ -165575,7 +160965,7 @@ A deep learning python package for neuroimaging data.""" ;
     sc:url "https://github.com/univieCUBE/deepnog" .
 
 <https://bio.tools/deepolf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3318,
@@ -165588,7 +160978,7 @@ A deep learning python package for neuroimaging data.""" ;
     sc:url "https://bioserver.iiita.ac.in/DeepOlf/" .
 
 <https://bio.tools/deepome> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0659,
@@ -165607,8 +160997,30 @@ A deep learning python package for neuroimaging data.""" ;
     biotools:primaryContact "Jian Ren",
         "Yubin Xie" .
 
+<https://bio.tools/deeppfp-co> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application",
+        "Workbench" ;
+    sc:applicationSubCategory edam:topic_0078,
+        edam:topic_0080,
+        edam:topic_0089,
+        edam:topic_1775,
+        edam:topic_3303 ;
+    sc:citation <https://doi.org/10.1109/TCBB.2022.3170719>,
+        "pubmed:35476573" ;
+    sc:description "A deep learning framework for predicting protein functions with co-occurrence of GO terms." ;
+    sc:featureList edam:operation_0477,
+        edam:operation_1777,
+        edam:operation_3927 ;
+    sc:license "Not licensed" ;
+    sc:name "DeepPFP-CO" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://csuligroup.com/DeepPFP/" .
+
 <https://bio.tools/deepphospho> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application",
         "Web application" ;
@@ -165630,7 +161042,7 @@ A deep learning python package for neuroimaging data.""" ;
     biotools:primaryContact <https://orcid.org/0000-0002-5245-2477> .
 
 <https://bio.tools/deeppocket> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0166,
         edam:topic_0209,
@@ -165653,7 +161065,7 @@ A deep learning python package for neuroimaging data.""" ;
     sc:url "https://github.com/devalab/DeepPocket" .
 
 <https://bio.tools/deeppod> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0780,
@@ -165672,7 +161084,7 @@ A deep learning python package for neuroimaging data.""" ;
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 <https://bio.tools/deepprog> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2640,
@@ -165688,8 +161100,21 @@ A deep learning python package for neuroimaging data.""" ;
     sc:name "DeepProg" ;
     sc:url "https://hub.docker.com/repository/docker/opoirion/deepprog_docker" .
 
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+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0154,
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+        edam:topic_3474 ;
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+        "pubmed:35994933" ;
+    sc:description "A deep learning-based method, DeepPSE, to predict polypharmacy side effects in an end-to-end way." ;
+    sc:license "Not licensed" ;
+    sc:name "DeepPSE" ;
+    sc:url "https://github.com/ShenggengLin/DeepPSE" .
+
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@@ -165707,7 +161132,7 @@ A deep learning python package for neuroimaging data.""" ;
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 <https://bio.tools/deepr2cov> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
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     sc:applicationSubCategory edam:topic_0202,
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@@ -165728,7 +161153,7 @@ A deep learning python package for neuroimaging data.""" ;
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 <https://bio.tools/deeprc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
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@@ -165741,8 +161166,54 @@ A deep learning python package for neuroimaging data.""" ;
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     sc:url "https://github.com/ml-jku/DeepRC" .
 
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+    sc:license "Apache-2.0" ;
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+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/bm2-lab/DeepReac" .
+
+<https://bio.tools/deepreal> a sc:SoftwareApplication ;
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+        edam:topic_3336,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC154>,
+        "pmcid:PMC9048666",
+        "pubmed:35274689" ;
+    sc:description "A Deep Learning Powered Multi-scale Modeling Framework for Predicting Out-of-distribution Ligand-induced GPCR Activity." ;
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+        edam:operation_0479,
+        edam:operation_2995 ;
+    sc:isAccessibleForFree true ;
+    sc:license "CC-BY-NC-4.0" ;
+    sc:name "DeepREAL" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/XieResearchGroup/DeepREAL" .
+
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-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0099,
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@@ -165764,7 +161235,7 @@ A deep learning python package for neuroimaging data.""" ;
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-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
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     sc:applicationSubCategory edam:topic_0077,
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@@ -165781,7 +161252,7 @@ A deep learning python package for neuroimaging data.""" ;
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 <https://bio.tools/deepregfinder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
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@@ -165798,7 +161269,7 @@ A deep learning python package for neuroimaging data.""" ;
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 <https://bio.tools/deeprei> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
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     sc:applicationSubCategory edam:topic_3474 ;
     sc:citation <https://doi.org/10.1016/J.ACA.2020.12.043>,
@@ -165808,8 +161279,32 @@ A deep learning python package for neuroimaging data.""" ;
     sc:name "DeepReI" ;
     sc:url "https://github.com/TomasVrzal/DeepReI" .
 
+<https://bio.tools/deeprepeat> a sc:SoftwareApplication ;
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+    sc:additionalType "Workbench",
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+    sc:citation <https://doi.org/10.1186/S13059-022-02670-6>,
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+    sc:description "DeepRepeat is a computational method to detect STRs from nanopore sequencing data through direct analysis of electric signals rather than basecalled reads" ;
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+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "DeepRepeat" ;
+    sc:operatingSystem "Linux" ;
+    sc:url "https://github.com/WGLab/DeepRepeat" .
+
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+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
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@@ -165827,8 +161322,36 @@ A deep learning python package for neuroimaging data.""" ;
     sc:name "DeepRescore" ;
     sc:url "https://github.com/bzhanglab/DeepRescore" .
 
+<https://bio.tools/deeprex> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
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+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence" ] ;
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+    sc:additionalType "Command-line tool",
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+        edam:topic_0160,
+        edam:topic_0166,
+        edam:topic_3297,
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+    sc:citation <https://doi.org/10.1016/J.CSBJ.2021.10.016>,
+        "pmcid:PMC8566768",
+        "pubmed:34765094" ;
+    sc:description "A web server for characterising protein-solvent interaction starting from sequence." ;
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+        edam:operation_3904 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "DeepREx" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://deeprex.biocomp.unibo.it" .
+
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-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0114,
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@@ -165845,7 +161368,7 @@ A deep learning python package for neuroimaging data.""" ;
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 <https://bio.tools/deeprke> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3320,
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@@ -165865,7 +161388,7 @@ A deep learning python package for neuroimaging data.""" ;
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 <https://bio.tools/deeps> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
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     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3304,
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@@ -165883,7 +161406,7 @@ A deep learning python package for neuroimaging data.""" ;
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 <https://bio.tools/deepsacon> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3474,
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@@ -165896,7 +161419,7 @@ A deep learning python package for neuroimaging data.""" ;
     biotools:primaryContact "Zhiwen Zeng" .
 
 <https://bio.tools/deepsc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
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@@ -165915,7 +161438,7 @@ A deep learning python package for neuroimaging data.""" ;
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 <https://bio.tools/deepscreen> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
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     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
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@@ -165932,8 +161455,26 @@ A deep learning python package for neuroimaging data.""" ;
     sc:name "DEEPScreen" ;
     sc:url "https://github.com/cansyl/DEEPscreen" .
 
+<https://bio.tools/deepse> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0749,
+        edam:topic_3169,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1016/J.YGENO.2021.10.007>,
+        "pubmed:34666191" ;
+    sc:description "Detecting super-enhancers among typical enhancers using only sequence feature embeddings." ;
+    sc:featureList edam:operation_0253 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "DeepSE" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/QiaoyingJi/DeepSE" .
+
 <https://bio.tools/deepsec> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Workbench" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -165955,7 +161496,7 @@ A deep learning python package for neuroimaging data.""" ;
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 <https://bio.tools/deepseg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
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@@ -165973,7 +161514,7 @@ A deep learning python package for neuroimaging data.""" ;
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 <https://bio.tools/deepselex> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
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@@ -165987,20 +161528,33 @@ A deep learning python package for neuroimaging data.""" ;
     sc:name "DeepSELEX" ;
     sc:url "http://github.com/OrensteinLab/DeepSELEX/" .
 
+<https://bio.tools/deepseparator> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workbench" ;
+    sc:applicationSubCategory edam:topic_3474,
+        edam:topic_3520 ;
+    sc:citation <https://doi.org/10.1088/1741-2552/AC63EB>,
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+    sc:description "An deep learning framework to separate neural signal and artifacts in the embedding space and reconstruct the denoised signal" ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "DeepSeparator" ;
+    sc:url "https://github.com/ncclabsustech/DeepSeparator" .
+
 <https://bio.tools/deepsig> a sc:SoftwareApplication ;
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-            sc:name "Taxonomy" ;
-            sc:sameAs "http://edamontology.org/data_3028" ],
+            sc:additionalType "http://edamontology.org/data_2974" ;
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-            sc:name "Protein sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_2974" ] ;
+            sc:additionalType "http://edamontology.org/data_3028" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Taxonomy" ] ;
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-            sc:sameAs "http://edamontology.org/data_0896" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
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+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Protein report" ] ;
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     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0123,
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@@ -166020,8 +161574,30 @@ A deep learning python package for neuroimaging data.""" ;
     biotools:primaryContact "Castrense Savojardo",
         "Pier Luigi Martelli" .
 
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+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0089,
+        edam:topic_0203,
+        edam:topic_0621,
+        edam:topic_0659,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC304>,
+        "pmcid:PMC9154256",
+        "pubmed:35536192" ;
+    sc:description "SeepSimDEF offers single- and multi-channel deep learning models for functional analysis of genes using Gene Ontology annotations of gene products (RNAs, proteins, etc)." ;
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+        edam:operation_2492,
+        edam:operation_3463,
+        edam:operation_3663,
+        edam:operation_3672 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "deepSimDEF" ;
+    sc:url "https://github.com/ahmadpgh/deepSimDEF" .
+
 <https://bio.tools/deepsimulator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
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 <https://bio.tools/deepsinse> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
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         edam:topic_3382,
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@@ -166053,8 +161629,24 @@ A deep learning python package for neuroimaging data.""" ;
     sc:url "http://www.github.com/jdanial/DeepSinse" ;
     biotools:primaryContact <https://orcid.org/0000-0002-9882-8441> .
 
+<https://bio.tools/deepsmote> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workbench" ;
+    sc:applicationSubCategory edam:topic_3382,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1109/TNNLS.2021.3136503>,
+        "pubmed:35085094" ;
+    sc:description "Fusing Deep Learning and SMOTE for Imbalanced Data." ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "DeepSMOTE" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/dd1github/DeepSMOTE" .
+
 <https://bio.tools/deepsmp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_0820,
@@ -166069,7 +161661,7 @@ A deep learning python package for neuroimaging data.""" ;
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 <https://bio.tools/deepsnv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3168 ;
@@ -166088,8 +161680,28 @@ A deep learning python package for neuroimaging data.""" ;
     sc:url "http://bioconductor.org/packages/release/bioc/html/deepSNV.html" ;
     biotools:primaryContact "Moritz Gerstung" .
 
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+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Suite",
+        "Workbench",
+        "Workflow" ;
+    sc:applicationSubCategory edam:topic_3382,
+        edam:topic_3474,
+        edam:topic_3520 ;
+    sc:citation <https://doi.org/10.3389/FRAI.2022.856232>,
+        "pmcid:PMC8969434",
+        "pubmed:35372830" ;
+    sc:description "DeepSpectrumLite is a Python toolkit to design and train light-weight Deep Neural Networks (DNNs) for classification tasks from raw audio data." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3359,
+        edam:operation_3659 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "DeepSpectrumLite" ;
+    sc:url "https://github.com/DeepSpectrum/DeepSpectrumLite" .
+
 <https://bio.tools/deepstorm3d> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
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     sc:applicationSubCategory edam:topic_2229,
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@@ -166106,7 +161718,7 @@ A deep learning python package for neuroimaging data.""" ;
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 <https://bio.tools/deepsuccinylsite> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
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     sc:applicationSubCategory edam:topic_0601,
         edam:topic_3300,
@@ -166123,7 +161735,7 @@ A deep learning python package for neuroimaging data.""" ;
     sc:url "https://github.com/dukkakc/DeepSuccinylSite" .
 
 <https://bio.tools/deepsurf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0166,
         edam:topic_3336,
@@ -166139,7 +161751,7 @@ A deep learning python package for neuroimaging data.""" ;
     sc:url "https://github.com/stemylonas/DeepSurf" .
 
 <https://bio.tools/deepsvfilter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3382,
@@ -166158,7 +161770,7 @@ A deep learning python package for neuroimaging data.""" ;
     sc:url "https://github.com/yongzhuang/DeepSVFilter" .
 
 <https://bio.tools/deepsvp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0203,
@@ -166175,7 +161787,7 @@ A deep learning python package for neuroimaging data.""" ;
     sc:url "https://github.com/bio-ontology-research-group/DeepSVP" .
 
 <https://bio.tools/deepsweep> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_2885,
@@ -166196,7 +161808,7 @@ A deep learning python package for neuroimaging data.""" ;
     sc:url "https://github.com/WDee/Deepsweep" .
 
 <https://bio.tools/deepsynergy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0622,
@@ -166215,7 +161827,7 @@ A deep learning python package for neuroimaging data.""" ;
     biotools:primaryContact "Günter Klambauer" .
 
 <https://bio.tools/deeptag> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3305,
@@ -166235,7 +161847,7 @@ This contains the source code for the DeepTag Project.""" ;
     sc:url "https://github.com/windweller/DeepTag" .
 
 <https://bio.tools/deepte> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0659,
@@ -166251,8 +161863,29 @@ This contains the source code for the DeepTag Project.""" ;
     sc:name "DeepTE" ;
     sc:url "https://github.com/LiLabAtVT/DeepTE" .
 
+<https://bio.tools/deeptesr> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script",
+        "Workbench" ;
+    sc:applicationSubCategory edam:topic_0108,
+        edam:topic_0203,
+        edam:topic_2229,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.1021/ACSSYNBIO.2C00202>,
+        "pubmed:35502843" ;
+    sc:description "DeepTESR can be used to predict the degree of TESR for gene expression control and to decipher the mechanism of translational control with ribosome profiling." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_2428,
+        edam:operation_3663 ;
+    sc:license "Not licensed" ;
+    sc:name "DeepTESR" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/fmblab/DeepTESR" .
+
 <https://bio.tools/deeptfactor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0749,
@@ -166270,7 +161903,7 @@ This contains the source code for the DeepTag Project.""" ;
     sc:url "https://bitbucket.org/kaistsystemsbiology/deeptfactor" .
 
 <https://bio.tools/deeptl-ubi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0601,
         edam:topic_3063,
@@ -166285,7 +161918,7 @@ This contains the source code for the DeepTag Project.""" ;
     sc:url "https://github.com/USTC-HIlab/DeepTL-Ubi" .
 
 <https://bio.tools/deeptminter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0154,
         edam:topic_0736,
@@ -166304,8 +161937,31 @@ This contains the source code for the DeepTag Project.""" ;
     sc:url "https://github.com/2003100127/deeptminter" ;
     biotools:primaryContact "Dmitrij Frishman" .
 
+<https://bio.tools/deeptmpred> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Desktop application" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0209,
+        edam:topic_0820,
+        edam:topic_3474,
+        edam:topic_3510 ;
+    sc:citation <https://doi.org/10.1016/J.CSBJ.2022.04.024>,
+        "pmcid:PMC9062415",
+        "pubmed:35521551" ;
+    sc:description "Ttopology prediction of alpha-helical transmembrane proteins" ;
+    sc:featureList edam:operation_0269,
+        edam:operation_0272,
+        edam:operation_2241,
+        edam:operation_3927,
+        edam:operation_4009 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "DeepTMpred" ;
+    sc:softwareHelp <https://colab.research.google.com/github/ISYSLAB-HUST/DeepTMpred/blob/master/notebook/test.ipynb> ;
+    sc:url "https://github.com/ISYSLAB-HUST/DeepTMpred" .
+
 <https://bio.tools/deeptools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3169 ;
@@ -166322,7 +161978,7 @@ This contains the source code for the DeepTag Project.""" ;
     biotools:primaryContact "deepToops Support" .
 
 <https://bio.tools/deeptracer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2814,
@@ -166336,8 +161992,56 @@ This contains the source code for the DeepTag Project.""" ;
     sc:name "DeepTracer" ;
     sc:url "https://deeptracer.uw.edu" .
 
+<https://bio.tools/deeptrio> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:name "Protein sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0128,
+        edam:topic_0130,
+        edam:topic_2275,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAB737>,
+        "pmcid:PMC8756175",
+        "pubmed:34694333" ;
+    sc:description "A ternary prediction system for protein-protein interaction using mask multiple parallel convolutional neural networks." ;
+    sc:featureList edam:operation_0272,
+        edam:operation_0478,
+        edam:operation_2492,
+        edam:operation_3094,
+        edam:operation_3431 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "DeepTrio" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://bis.zju.edu.cn/deeptrio" .
+
+<https://bio.tools/deepumqa> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0078,
+        edam:topic_0082,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1093/bioinformatics/btac056>,
+        "pubmed:35134108" ;
+    sc:description "Ultrafast Shape Recognition-based Protein Model Quality Assessment using Deep Learning." ;
+    sc:featureList edam:operation_0320,
+        edam:operation_0477,
+        edam:operation_2950,
+        edam:operation_3937 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "DeepUMQA" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/iobio-zjut/DeepUMQA" .
+
 <https://bio.tools/deepvariant> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0625,
         edam:topic_2885,
@@ -166353,7 +162057,7 @@ This contains the source code for the DeepTag Project.""" ;
     sc:url "https://github.com/google/deepvariant" .
 
 <https://bio.tools/deepvariant-on-spark> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0769,
@@ -166372,7 +162076,7 @@ This contains the source code for the DeepTag Project.""" ;
     sc:url "https://github.com/atgenomix/deepvariant-on-spark" .
 
 <https://bio.tools/deepvf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0602,
@@ -166389,7 +162093,7 @@ This contains the source code for the DeepTag Project.""" ;
     sc:url "http://deepvf.erc.monash.edu/" .
 
 <https://bio.tools/deepviral> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0128,
@@ -166406,7 +162110,7 @@ This contains the source code for the DeepTag Project.""" ;
     sc:url "https://github.com/bio-ontology-research-group/DeepViral" .
 
 <https://bio.tools/deepvisp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_2640,
@@ -166424,8 +162128,14 @@ This contains the source code for the DeepTag Project.""" ;
     sc:url "https://bioinfo.uth.edu/DeepVISP" ;
     biotools:primaryContact "Zhongming Zhao" .
 
+<https://bio.tools/deepvp> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:description "Identification and classification of phage virion proteins using deep learning" ;
+    sc:name "DeePVP" ;
+    sc:url "https://github.com/fangzcbio/DeePVP" .
+
 <https://bio.tools/deepwas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2885,
@@ -166445,7 +162155,7 @@ This contains the source code for the DeepTag Project.""" ;
     sc:url "https://github.com/cellmapslab/DeepWAS" .
 
 <https://bio.tools/deepyy1> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_2229,
@@ -166460,7 +162170,7 @@ This contains the source code for the DeepTag Project.""" ;
     sc:url "http://lin-group.cn/server/DeepYY1" .
 
 <https://bio.tools/deer-predict> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0176,
         edam:topic_0593,
@@ -166476,7 +162186,7 @@ This contains the source code for the DeepTag Project.""" ;
     sc:url "http://github.com/KULL-Centre/DEERpredict" .
 
 <https://bio.tools/deerect-apa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_2885,
@@ -166494,7 +162204,7 @@ This contains the source code for the DeepTag Project.""" ;
     sc:url "https://github.com/lzx325/DeeReCT-APA-repo" .
 
 <https://bio.tools/deerect-tss> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3169,
@@ -166513,7 +162223,7 @@ This contains the source code for the DeepTag Project.""" ;
     sc:url "https://github.com/JoshuaChou2018/DeeReCT-TSS_release" .
 
 <https://bio.tools/deez> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0654 ;
@@ -166527,7 +162237,7 @@ This contains the source code for the DeepTag Project.""" ;
     sc:url "http://sfu-compbio.github.io/deez/" .
 
 <https://bio.tools/defcom> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3168,
         edam:topic_3511 ;
@@ -166547,21 +162257,8 @@ This contains the source code for the DeepTag Project.""" ;
     biotools:primaryContact "Bryan Quach",
         "Terry Furey" .
 
-<https://bio.tools/defence_adaptation> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0625,
-        edam:topic_0780,
-        edam:topic_2885 ;
-    sc:citation <https://doi.org/10.1002/ECE3.5275>,
-        "pmcid:PMC6662289",
-        "pubmed:31380062" ;
-    sc:description "> VERY_LOW CONFIDENCE! | > CORRECT NAME OF TOOL COULD ALSO BE 'defence-related', 'enemies', 'budgets', 'invasives' | Rapid growth and defence evolution following multiple introductions | Rscripts for growth and defence analyses | Data available on: https://doi.org/10.6084/m9.figshare.8028875.v1 | Citation: Lotte A. van Boheemen, Sarah Bou-Assi, Akane Uesugi, Kathryn A. Hodgins (2019). Rapid growth and defence evolution following multiple introductions bioRxiv https://doi.org/10.1101/435271" ;
-    sc:featureList edam:operation_3196 ;
-    sc:license "MIT" ;
-    sc:name "defence_adaptation" ;
-    sc:url "https://github.com/lotteanna/defence_adaptation" .
-
 <https://bio.tools/deform-nu> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3125,
         edam:topic_3127,
@@ -166577,7 +162274,7 @@ This contains the source code for the DeepTag Project.""" ;
     sc:url "http://lin-group.cn/server/deform-nu/" .
 
 <https://bio.tools/deformats> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203 ;
@@ -166594,8 +162291,29 @@ This contains the source code for the DeepTag Project.""" ;
     sc:url "http://bioconductor.org/packages/release/bioc/html/DEFormats.html" ;
     biotools:primaryContact "Andrzej Oleś" .
 
+<https://bio.tools/defpred> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0621,
+        edam:topic_0780,
+        edam:topic_3474,
+        edam:topic_3500 ;
+    sc:citation <https://doi.org/10.3389/FIMMU.2021.780610>,
+        "pmcid:PMC8645896",
+        "pubmed:34880873" ;
+    sc:description "Defpred is a web server that predicts the presence of Defensins in given query protein sequqnces." ;
+    sc:featureList edam:operation_0417,
+        edam:operation_2428 ;
+    sc:isAccessibleForFree true ;
+    sc:name "DefPred" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://webs.iiitd.edu.in/raghava/defpred" .
+
 <https://bio.tools/defume> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3168 ;
@@ -166617,7 +162335,7 @@ This contains the source code for the DeepTag Project.""" ;
         "Henrik Marcus Geertz-Hansen" .
 
 <https://bio.tools/defuse> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0114,
         edam:topic_2640,
@@ -166637,14 +162355,12 @@ This contains the source code for the DeepTag Project.""" ;
 
 <https://bio.tools/degapseq> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -166673,8 +162389,29 @@ This contains the source code for the DeepTag Project.""" ;
     sc:softwareVersion "r6" ;
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/degapseq.html" .
 
+<https://bio.tools/degnext> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workflow" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_2640,
+        edam:topic_3170,
+        edam:topic_3360,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1186/S12859-021-04527-4>,
+        "pmcid:PMC8734099",
+        "pubmed:34991439" ;
+    sc:description "The DEGnext is a CNN model proposed to predict UR and DR genes from RNA-seq cancer datasets." ;
+    sc:featureList edam:operation_0533,
+        edam:operation_3223,
+        edam:operation_3937 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "DEGnext" ;
+    sc:operatingSystem "Windows" ;
+    sc:url "https://github.com/tulikakakati/DEGnext" .
+
 <https://bio.tools/degps> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0099,
@@ -166694,7 +162431,7 @@ This contains the source code for the DeepTag Project.""" ;
     biotools:primaryContact "Yan Lu" .
 
 <https://bio.tools/degraph> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2269 ;
@@ -166712,7 +162449,7 @@ This contains the source code for the DeepTag Project.""" ;
     biotools:primaryContact "Laurent Jacob" .
 
 <https://bio.tools/degreport> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203 ;
@@ -166730,8 +162467,32 @@ This contains the source code for the DeepTag Project.""" ;
     sc:url "http://bioconductor.org/packages/release/bioc/html/DEGreport.html" ;
     biotools:primaryContact "Lorena Pantano" .
 
+<https://bio.tools/degron-related> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0128,
+        edam:topic_0154,
+        edam:topic_0160,
+        edam:topic_0634,
+        edam:topic_3957 ;
+    sc:citation <https://doi.org/10.1186/S12915-022-01364-6>,
+        "pmcid:PMC9281121",
+        "pubmed:35836176" ;
+    sc:description "A deep learning model to predict E3 binding sites (degrons) on protein substrates." ;
+    sc:featureList edam:operation_0417,
+        edam:operation_2492,
+        edam:operation_4009 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "degron-related" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <http://degron.phasep.pro/data_summary/> ;
+    sc:url "http://degron.phasep.pro/" .
+
 <https://bio.tools/degseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -166750,8 +162511,49 @@ This contains the source code for the DeepTag Project.""" ;
     sc:url "http://bioconductor.org/packages/release/bioc/html/DEGseq.html" ;
     biotools:primaryContact "Likun Wang" .
 
+<https://bio.tools/deimos> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0593,
+        edam:topic_0769,
+        edam:topic_3172,
+        edam:topic_3520 ;
+    sc:citation <https://doi.org/10.1021/ACS.ANALCHEM.1C05017>,
+        "pmcid:PMC9047447",
+        "pubmed:35430813" ;
+    sc:description "DEIMoS: Data Extraction for Integrated Multidimensional Spectrometry, a Python application programming interface (API) and command-line tool for high-dimensional mass spectrometry data analysis workflows that offers ease of development and access to efficient algorithmic implementations." ;
+    sc:featureList edam:operation_3215,
+        edam:operation_3431,
+        edam:operation_3627,
+        edam:operation_3629,
+        edam:operation_3860 ;
+    sc:isAccessibleForFree true ;
+    sc:license "BSD-3-Clause" ;
+    sc:name "DEIMoS" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://github.com/pnnl/deimos" .
+
+<https://bio.tools/dela-drug> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0634,
+        edam:topic_2828,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1021/ACS.JCIM.2C00205>,
+        "pubmed:35294184" ;
+    sc:description "DeLA-Drug is an artificial intelligence-based platform able to generate drug-like analogues starting from a single user-defined query compound." ;
+    sc:featureList edam:operation_3938 ;
+    sc:isAccessibleForFree true ;
+    sc:name "DeLA-Drug" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://www.ba.ic.cnr.it/softwareic/deladrugportal/" .
+
 <https://bio.tools/delayedarray> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:description "Wrapping an array-like object in a DelayedArray object allows one to perform common array operations on it without loading the object in memory. In order to reduce memory usage and optimize performance, operations on the object are either delayed or executed using a block processing mechanism. Note that this also works on in-memory array-like objects like DataFrame objects, Matrix objects, and ordinary arrays and data frames." ;
@@ -166768,7 +162570,7 @@ This contains the source code for the DeepTag Project.""" ;
     biotools:primaryContact "Hervé Pagès" .
 
 <https://bio.tools/delayedmatrixstats> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3473 ;
     sc:description "A port of the 'matrixStats' API for use with DelayedMatrix objects from the 'DelayedArray' package. High-performing functions operating on rows and columns of DelayedMatrix objects, e.g. col / rowMedians(), col / rowRanks(), and col / rowSds(). Functions optimized per data type and for subsetted calculations such that both memory usage and processing time is minimized." ;
@@ -166784,7 +162586,7 @@ This contains the source code for the DeepTag Project.""" ;
     biotools:primaryContact "Peter Hickey" .
 
 <https://bio.tools/deleat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0622,
@@ -166805,8 +162607,29 @@ This contains the source code for the DeepTag Project.""" ;
     sc:softwareVersion "0.1" ;
     sc:url "https://github.com/jime-sg/deleat" .
 
+<https://bio.tools/delfta> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Suite" ;
+    sc:applicationSubCategory edam:topic_0209,
+        edam:topic_3303,
+        edam:topic_3332,
+        edam:topic_3474,
+        edam:topic_3892 ;
+    sc:citation <https://doi.org/10.1039/D2CP00834C>,
+        "pmcid:PMC9093086",
+        "pubmed:35470831" ;
+    sc:description "DelFTa, an open-source toolbox for the prediction of electronic properties of drug-like molecules at the density functional (DFT) level of theory, using Δ-machine-learning" ;
+    sc:featureList edam:operation_0337,
+        edam:operation_0394,
+        edam:operation_2476 ;
+    sc:isAccessibleForFree true ;
+    sc:license "AGPL-3.0" ;
+    sc:name "DelFTa" ;
+    sc:operatingSystem "Mac" ;
+    sc:url "https://github.com/josejimenezluna/delfta" .
+
 <https://bio.tools/delia> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0154,
@@ -166823,7 +162646,7 @@ This contains the source code for the DeepTag Project.""" ;
     sc:url "http://www.csbio.sjtu.edu.cn/bioinf/delia/" .
 
 <https://bio.tools/delila-py> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0203,
@@ -166842,7 +162665,7 @@ This contains the source code for the DeepTag Project.""" ;
     biotools:primaryContact <https://orcid.org/0000-0001-8738-2467> .
 
 <https://bio.tools/delimitR> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2885,
         edam:topic_3050,
@@ -166859,18 +162682,18 @@ This contains the source code for the DeepTag Project.""" ;
 
 <https://bio.tools/delly2> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ],
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Nucleic acid sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1383" ;
-            sc:name "Nucleic acid sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_1383" ] ;
+            sc:additionalType "http://edamontology.org/data_1383" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Nucleic acid sequence alignment" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3020" ;
+            sc:name "Sequence variations" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0091,
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@@ -166898,7 +162721,7 @@ This contains the source code for the DeepTag Project.""" ;
     sc:url "https://github.com/dellytools/delly" .
 
 <https://bio.tools/delphi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0166,
@@ -166914,7 +162737,7 @@ This contains the source code for the DeepTag Project.""" ;
     sc:url "http://www.csd.uwo.ca/~ilie/DELPHI/" .
 
 <https://bio.tools/delphi_force> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0097,
@@ -166932,7 +162755,7 @@ This contains the source code for the DeepTag Project.""" ;
     biotools:primaryContact "Support" .
 
 <https://bio.tools/delphiforce> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0153,
@@ -166956,7 +162779,7 @@ This contains the source code for the DeepTag Project.""" ;
     biotools:primaryContact "Emil Alexov" .
 
 <https://bio.tools/deltaRpkm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0199,
@@ -166985,14 +162808,14 @@ An R package for a rapid differential gene presence analysis between large datas
 
 <https://bio.tools/delta_mass> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2618" ;
-            sc:name "Protein modification ID" ;
-            sc:sameAs "http://edamontology.org/data_2618" ] ;
+            sc:additionalType "http://edamontology.org/data_2618" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Protein modification ID" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0844" ;
-            sc:name "Molecular mass" ;
-            sc:sameAs "http://edamontology.org/data_0844" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0844" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Molecular mass" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0601,
@@ -167008,14 +162831,12 @@ An R package for a rapid differential gene presence analysis between large datas
 
 <https://bio.tools/deltag_prediction> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:name "Protein sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:name "Protein features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0736 ;
     sc:citation <https://doi.org/10.1038/nature06387> ;
@@ -167031,7 +162852,7 @@ An R package for a rapid differential gene presence analysis between large datas
     sc:url "http://dgpred.cbr.su.se/" .
 
 <https://bio.tools/deltagseg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0176,
@@ -167051,18 +162872,17 @@ An R package for a rapid differential gene presence analysis between large datas
 
 <https://bio.tools/deltamass> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ],
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3654" ;
+            sc:name "Mass spectrometry spectra" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_3655" ;
+            sc:name "Peptide identification" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0844" ;
-            sc:name "Molecular mass" ;
-            sc:sameAs "http://edamontology.org/data_0844" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0844" ;
+            sc:name "Molecular mass" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121 ;
@@ -167083,7 +162903,7 @@ An R package for a rapid differential gene presence analysis between large datas
     biotools:primaryContact "Dmitry Avtonomov" .
 
 <https://bio.tools/deltanet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2259 ;
@@ -167100,7 +162920,7 @@ An R package for a rapid differential gene presence analysis between large datas
     sc:url "http://www.cabsel.ethz.ch/tools/DeltaNet" .
 
 <https://bio.tools/deltaprot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0797,
@@ -167117,7 +162937,7 @@ An R package for a rapid differential gene presence analysis between large datas
     biotools:primaryContact "Steinar Thorvaldsen" .
 
 <https://bio.tools/deltascope> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3382 ;
     sc:citation <https://doi.org/10.1016/J.YDBIO.2019.11.014>,
@@ -167131,8 +162951,30 @@ Research in the life sciences has traditionally relied on the analysis of clear
     sc:name "SCOPE" ;
     sc:url "https://github.com/msschwartz21/deltascope" .
 
+<https://bio.tools/dema> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Plug-in" ;
+    sc:applicationSubCategory edam:topic_0128,
+        edam:topic_0203,
+        edam:topic_0634 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC261>,
+        "pmcid:PMC9235497",
+        "pubmed:35758816" ;
+    sc:description "DEMA (Distance-bounded Energy-field Minimization Algorithm) an algorithm to model and layout biomolecular networks with quantitative properties." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_2436,
+        edam:operation_3799,
+        edam:operation_3927 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "DEMA" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://discovery.informatics.uab.edu/dema" .
+
 <https://bio.tools/demand> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0202,
@@ -167152,7 +162994,7 @@ Research in the life sciences has traditionally relied on the analysis of clear
         "Mariano Alvarez" .
 
 <https://bio.tools/demask> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
@@ -167172,7 +163014,7 @@ Research in the life sciences has traditionally relied on the analysis of clear
     sc:url "https://demask.princeton.edu" .
 
 <https://bio.tools/dembf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0153,
@@ -167191,7 +163033,7 @@ Research in the life sciences has traditionally relied on the analysis of clear
     sc:url "http://bbprof.immt.res.in/embf/" .
 
 <https://bio.tools/demeta> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2885,
         edam:topic_3337,
@@ -167202,47 +163044,29 @@ Research in the life sciences has traditionally relied on the analysis of clear
     sc:name "deMeta" ;
     sc:url "https://github.com/Computational-NeuroGenetics/deMeta-beta" .
 
-<https://bio.tools/demineralized_enamel_demineralized_enamel> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3407 ;
-    sc:citation <https://doi.org/10.12688/F1000RESEARCH.20523.1>,
-        "pmcid:PMC6833993",
-        "pubmed:31723426" ;
-    sc:description """Adhesive systems effect over bond strength of resin-infiltrated and de/remineralized enamel.
-
-Background: The purpose of this study was to evaluate the effect of different bonding agents on bond-strength to demineralized enamel after remineralizing treatments and resin infiltration. Methods: Buccal enamel of 120 bovine incisors was polished and then were divided into five experimental groups: SE (sound enamel); DE (demineralized enamel); AS (demineralized enamel immersed in artificial saliva for eight weeks); NaF (demineralized enamel treated with 0.05% sodium fluoride solution (one minute) for eight weeks); Ic (demineralized enamel infiltrated with a low-viscosity resin (Icon-DGM).
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'demineralized enamel demineralized enamel immersed', 'enamel demineralized enamel', 'demineralized enamel', 'demineralized enamel demineralized'""" ;
-    sc:name "demineralized enamel demineralized enamel" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31723426" .
-
-<https://bio.tools/demo_m> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0091,
-        edam:topic_3303,
-        edam:topic_3321,
-        edam:topic_3379,
-        edam:topic_3676 ;
-    sc:citation <https://doi.org/10.1186/S12909-019-1817-2>,
-        "pmcid:PMC6813102",
-        "pubmed:31651301" ;
-    sc:description """development and evaluation of an e-learning application for medical molecular genetics.
-
-PRACTICAL "GENOMICS AND BIOINFORMATICS - SINGLE-GENE ANALYSIS".
-
-Authors: Kamila Procházková, Zdeněk Sedláček.
-
-Department of Biology and Medical Genetics,.
-
-Charles University 2nd Faculty of Medicine, Prague.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'Teaching difficult topic using problem-based concept resembling computer game'""" ;
-    sc:featureList edam:operation_3283 ;
-    sc:name "demo_m" ;
-    sc:url "https://medbio.lf2.cuni.cz/demo_m/" .
+<https://bio.tools/demo2> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0082,
+        edam:topic_0196,
+        edam:topic_0736 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAC340>,
+        "pmcid:PMC9252800",
+        "pubmed:35536281" ;
+    sc:description "DEMO (Domain Enhanced MOdeling, version 2) is an significantly improved version for automated assembly of full-length structural models of multi-domain proteins by integrating analogous template alignments with deep-learning predicted inter-domain spatial restraints." ;
+    sc:featureList edam:operation_0295,
+        edam:operation_0303,
+        edam:operation_0474 ;
+    sc:license "Not licensed" ;
+    sc:name "DEMO2" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://zhanggroup.org/DEMO/example/> ;
+    sc:url "https://zhanggroup.org/DEMO/" .
 
 <https://bio.tools/demos> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0634,
@@ -167261,18 +163085,18 @@ Charles University 2nd Faculty of Medicine, Prague.
 
 <https://bio.tools/demuxlet> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1383" ;
-            sc:name "Sequence alignment (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1383" ],
+            sc:additionalType "http://edamontology.org/data_1383" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
+            sc:name "Sequence alignment (nucleic acid)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ] ;
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence variations" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3308 ;
@@ -167292,8 +163116,31 @@ Charles University 2nd Faculty of Medicine, Prague.
     sc:softwareHelp <https://github.com/statgen/demuxlet/tree/master/tutorial> ;
     sc:url "https://github.com/statgen/demuxlet" .
 
+<https://bio.tools/dena> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workbench" ;
+    sc:applicationSubCategory edam:topic_0780,
+        edam:topic_3170,
+        edam:topic_3308,
+        edam:topic_3474,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.1186/S13059-021-02598-3>,
+        "pmcid:PMC8762864",
+        "pubmed:35039061" ;
+    sc:description "DENA (Deeplearning Explore Nanopore m6A). Deep learning model used to detect RNA m6a with read level based on the Nanopore direct RNA data." ;
+    sc:featureList edam:operation_0428,
+        edam:operation_3799,
+        edam:operation_3927 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "DENA" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/weir12/DENA" .
+
 <https://bio.tools/dendPoint> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
@@ -167313,7 +163160,7 @@ Abstract: The development of nanomedicines currently suffers from a lack of effi
     sc:url "http://biosig.unimelb.edu.au/dendpoint" .
 
 <https://bio.tools/dendrix> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Plug-in" ;
     sc:applicationSubCategory edam:topic_2533,
@@ -167330,7 +163177,7 @@ Abstract: The development of nanomedicines currently suffers from a lack of effi
     sc:url "http://compbio.cs.brown.edu/projects/dendrix/" .
 
 <https://bio.tools/dendro> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0099,
@@ -167350,7 +163197,7 @@ Abstract: The development of nanomedicines currently suffers from a lack of effi
     sc:url "https://github.com/zhouzilu/DENDRO" .
 
 <https://bio.tools/dendronet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3293,
@@ -167365,7 +163212,7 @@ Abstract: The development of nanomedicines currently suffers from a lack of effi
     sc:url "https://github.com/BlanchetteLab/DendroNet" .
 
 <https://bio.tools/dendropy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0194,
         edam:topic_3293 ;
@@ -167385,7 +163232,7 @@ Abstract: The development of nanomedicines currently suffers from a lack of effi
     biotools:primaryContact "Jeet Sukumaran" .
 
 <https://bio.tools/dendroscan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_2269 ;
     sc:citation <https://doi.org/10.1038/S41598-020-78698-0>,
@@ -167403,7 +163250,7 @@ Abstract: The development of nanomedicines currently suffers from a lack of effi
     sc:url "https://github.com/lsschmidt/DendroScan" .
 
 <https://bio.tools/dendroscope3> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0092 ;
@@ -167421,7 +163268,7 @@ Abstract: The development of nanomedicines currently suffers from a lack of effi
     sc:url "http://dendroscope.org" .
 
 <https://bio.tools/dendrosplit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0160,
@@ -167440,7 +163287,7 @@ Abstract: The development of nanomedicines currently suffers from a lack of effi
     biotools:primaryContact "Jesse M. Zhang" .
 
 <https://bio.tools/denoisem> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0611,
         edam:topic_3384,
@@ -167467,7 +163314,7 @@ Apache/2.4.7 (Ubuntu) Server at bioimagingcore.be Port 443.""" ;
     sc:url "http://bioimagingcore.be/DenoisEM" .
 
 <https://bio.tools/denovo_pipeline> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:description "DeNovo Pipeline performes protein identification by de novo interpretation by coupling the PepNovo software for sequencing and the Fasta tool for homology searching." ;
@@ -167482,7 +163329,7 @@ Apache/2.4.7 (Ubuntu) Server at bioimagingcore.be Port 443.""" ;
     sc:url "http://pappso.inra.fr/bioinfo/denovopipeline/" .
 
 <https://bio.tools/denovocnn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0622,
@@ -167504,7 +163351,7 @@ Apache/2.4.7 (Ubuntu) Server at bioimagingcore.be Port 443.""" ;
     biotools:primaryContact <https://orcid.org/0000-0003-1693-9699> .
 
 <https://bio.tools/denovogear> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:citation <https://doi.org/10.1038/nmeth.2611> ;
     sc:description "DeNovoGear is a tool to detect denovo mutations using sequencing data of related individuals. DeNovoGear calls denovo SNP's and INDEL's in trios. DeNovoGear can also be used to phase denovo mutations using genotype information at neighboring SNP sites. In addition, DeNovoGear can also be used to analyze a pair of samples and call SNP's and INDEL's present in one sample but not the other." ;
     sc:featureList edam:operation_3227 ;
@@ -167513,14 +163360,14 @@ Apache/2.4.7 (Ubuntu) Server at bioimagingcore.be Port 443.""" ;
 
 <https://bio.tools/denovogui> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3651" ;
+            sc:name "Mass spectrometry spectra" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Peptide identification" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0078,
@@ -167543,7 +163390,7 @@ Apache/2.4.7 (Ubuntu) Server at bioimagingcore.be Port 443.""" ;
     sc:url "http://compomics.github.io/projects/denovogui.html" .
 
 <https://bio.tools/denovoid> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0121,
@@ -167566,7 +163413,7 @@ Apache/2.4.7 (Ubuntu) Server at bioimagingcore.be Port 443.""" ;
     biotools:primaryContact "DeNovoID Support" .
 
 <https://bio.tools/denovoprofiling> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0209,
@@ -167581,7 +163428,7 @@ Apache/2.4.7 (Ubuntu) Server at bioimagingcore.be Port 443.""" ;
     sc:url "http://denovoprofiling.xielab.net" .
 
 <https://bio.tools/denr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0659,
         edam:topic_3170,
@@ -167603,7 +163450,7 @@ Package can be installed with the following line of code:.""" ;
     biotools:primaryContact <https://orcid.org/0000-0002-3557-7219> .
 
 <https://bio.tools/densecpd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0130,
         edam:topic_0154,
@@ -167615,14 +163462,12 @@ Package can be installed with the following line of code:.""" ;
 
 <https://bio.tools/density> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2887" ;
-            sc:name "Nucleic acid sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2887" ] ;
+            sc:additionalType "http://edamontology.org/data_2887" ;
+            sc:name "Nucleic acid sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2167" ;
-            sc:name "Nucleic acid density plot" ;
-            sc:sameAs "http://edamontology.org/data_2167" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2167" ;
+            sc:name "Nucleic acid density plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0157 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -167652,7 +163497,7 @@ Package can be installed with the following line of code:.""" ;
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/density.html" .
 
 <https://bio.tools/density-estimator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3170,
@@ -167671,14 +163516,12 @@ Package can be installed with the following line of code:.""" ;
 
 <https://bio.tools/densityserver> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3786" ;
-            sc:name "Query script" ;
-            sc:sameAs "http://edamontology.org/data_3786" ] ;
+            sc:additionalType "http://edamontology.org/data_3786" ;
+            sc:name "Query script" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1710" ;
-            sc:name "Structure image" ;
-            sc:sameAs "http://edamontology.org/data_1710" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1710" ;
+            sc:name "Structure image" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0092 ;
     sc:author "David Sehnal" ;
@@ -167698,22 +163541,22 @@ Package can be installed with the following line of code:.""" ;
 
 <https://bio.tools/dentist> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1234" ;
-            sc:name "Sequence set (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1234" ],
+            sc:additionalType "http://edamontology.org/data_0925" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence assembly" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0925" ;
-            sc:name "Sequence assembly" ;
-            sc:sameAs "http://edamontology.org/data_0925" ] ;
+            sc:additionalType "http://edamontology.org/data_1234" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence set (nucleic acid)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2955" ;
-            sc:name "Sequence report" ;
-            sc:sameAs "http://edamontology.org/data_2955" ],
+            sc:additionalType "http://edamontology.org/data_2955" ;
+            sc:encodingFormat "http://edamontology.org/format_3003" ;
+            sc:name "Sequence report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0925" ;
-            sc:name "Sequence assembly" ;
-            sc:sameAs "http://edamontology.org/data_0925" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0925" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence assembly" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0769 ;
@@ -167734,7 +163577,7 @@ Package can be installed with the following line of code:.""" ;
     biotools:primaryContact <https://orcid.org/0000-0003-3024-1449> .
 
 <https://bio.tools/denvax> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3305,
         edam:topic_3379,
         edam:topic_3399 ;
@@ -167747,7 +163590,7 @@ Package can be installed with the following line of code:.""" ;
     sc:url "https://cran.r-project.org/web/packages/denvax/index.html" .
 
 <https://bio.tools/denvind> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0781,
@@ -167764,7 +163607,7 @@ Package can be installed with the following line of code:.""" ;
     sc:url "https://webs.iiitd.edu.in/raghava/denvind/" .
 
 <https://bio.tools/dep> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -167781,8 +163624,32 @@ Package can be installed with the following line of code:.""" ;
     sc:url "http://bioconductor.org/packages/release/bioc/html/DEP.html" ;
     biotools:primaryContact "Arne Smits" .
 
+<https://bio.tools/depcod> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0602,
+        edam:topic_0736,
+        edam:topic_3293,
+        edam:topic_3512,
+        edam:topic_3944 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAC349>,
+        "pmcid:PMC9252791",
+        "pubmed:35536332" ;
+    sc:description "A tool to detect and visualize co-evolution of protein domains" ;
+    sc:featureList edam:operation_0224,
+        edam:operation_0303,
+        edam:operation_3435 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "DEPCOD" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <http://genetics.mgh.harvard.edu/DEPCOD/help.php> ;
+    sc:url "http://genetics.mgh.harvard.edu/DEPCOD" .
+
 <https://bio.tools/dependency> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0128,
@@ -167798,8 +163665,30 @@ Package can be installed with the following line of code:.""" ;
     sc:softwareVersion "2.1" ;
     sc:url "http://www.uhnresearch.ca/labs/tillier/software.htm#2" .
 
+<https://bio.tools/depht> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0114,
+        edam:topic_0160,
+        edam:topic_0196,
+        edam:topic_3407,
+        edam:topic_3673 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAC273>,
+        "pubmed:35451479" ;
+    sc:description "Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences" ;
+    sc:featureList edam:operation_0362,
+        edam:operation_2422,
+        edam:operation_3192 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "DEPhT" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/chg60/DEPhT.git" .
+
 <https://bio.tools/depicter-promotor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0749,
@@ -167817,7 +163706,7 @@ Package can be installed with the following line of code:.""" ;
     sc:url "https://depicter.erc.monash.edu/" .
 
 <https://bio.tools/depie> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0130,
@@ -167834,7 +163723,7 @@ Package can be installed with the following line of code:.""" ;
     sc:url "http://biocore.unl.edu/primer/primerPI.html" .
 
 <https://bio.tools/deploid> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0625,
@@ -167853,7 +163742,7 @@ Package can be installed with the following line of code:.""" ;
         "Sha Joe Zhu" .
 
 <https://bio.tools/depmap-library> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0769,
@@ -167870,7 +163759,7 @@ Package can be installed with the following line of code:.""" ;
     biotools:primaryContact "Laurent Gatto" .
 
 <https://bio.tools/deproj> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_3383 ;
     sc:citation <https://doi.org/10.1101/2021.01.15.426809v3> ;
@@ -167885,7 +163774,7 @@ Package can be installed with the following line of code:.""" ;
     biotools:primaryContact <https://orcid.org/0000-0002-0998-4718> .
 
 <https://bio.tools/depth> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0130,
         edam:topic_0154,
@@ -167909,7 +163798,7 @@ Package can be installed with the following line of code:.""" ;
     biotools:primaryContact "COSPI Support" .
 
 <https://bio.tools/depthsizer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
@@ -167930,7 +163819,7 @@ Package can be installed with the following line of code:.""" ;
     sc:url "https://github.com/slimsuite/depthsizer" .
 
 <https://bio.tools/deqms> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0108,
@@ -167951,7 +163840,7 @@ Package can be installed with the following line of code:.""" ;
     sc:url "https://bioconductor.org/packages/release/bioc/html/DEqMS.html" .
 
 <https://bio.tools/deqor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0659,
@@ -167975,7 +163864,7 @@ Package can be installed with the following line of code:.""" ;
     sc:url "http://144.76.155.9/deqor_new/input.html" .
 
 <https://bio.tools/deregnet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0602,
@@ -167994,14 +163883,14 @@ Package can be installed with the following line of code:.""" ;
 
 <https://bio.tools/derfinder> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3496" ;
-            sc:name "RNA sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_3496" ] ;
+            sc:additionalType "http://edamontology.org/data_3496" ;
+            sc:encodingFormat "http://edamontology.org/format_3006" ;
+            sc:name "RNA sequence (raw)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3170 ;
@@ -168024,14 +163913,14 @@ Package can be installed with the following line of code:.""" ;
 
 <https://bio.tools/derfinderhelper> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2082" ;
-            sc:name "Matrix" ;
-            sc:sameAs "http://edamontology.org/data_2082" ] ;
+            sc:additionalType "http://edamontology.org/data_2082" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "Matrix" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0951" ;
-            sc:name "Statistical estimate score" ;
-            sc:sameAs "http://edamontology.org/data_0951" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0951" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Statistical estimate score" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3372 ;
@@ -168052,14 +163941,14 @@ Package can be installed with the following line of code:.""" ;
 
 <https://bio.tools/derfinderplot> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ] ;
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_2919" ;
+            sc:name "Annotation track" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0092 ;
@@ -168079,7 +163968,7 @@ Package can be installed with the following line of code:.""" ;
     biotools:primaryContact "Leonardo Collado-Torres" .
 
 <https://bio.tools/deriver> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0209,
@@ -168096,7 +163985,7 @@ Package can be installed with the following line of code:.""" ;
     sc:url "https://github.com/cyclica/deriver" .
 
 <https://bio.tools/descan2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3168,
         edam:topic_3295 ;
@@ -168113,7 +164002,7 @@ Package can be installed with the following line of code:.""" ;
     biotools:primaryContact "Dario Righelli" .
 
 <https://bio.tools/descfold> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0082 ;
     sc:citation <https://doi.org/10.1186/1471-2105-10-416> ;
@@ -168129,7 +164018,7 @@ Package can be installed with the following line of code:.""" ;
     sc:url "http://protein.cau.edu.cn/DescFold/" .
 
 <https://bio.tools/describeprot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -168149,14 +164038,12 @@ Package can be installed with the following line of code:.""" ;
 
 <https://bio.tools/descseq> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -168187,18 +164074,18 @@ Package can be installed with the following line of code:.""" ;
 
 <https://bio.tools/deseq> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3508" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203 ;
@@ -168220,7 +164107,7 @@ Package can be installed with the following line of code:.""" ;
     biotools:primaryContact <http://orcid.org/0000-0003-4868-1805> .
 
 <https://bio.tools/deseq2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3308 ;
     sc:author "Michael Love",
@@ -168240,21 +164127,31 @@ Package can be installed with the following line of code:.""" ;
     sc:softwareVersion "1" ;
     sc:url "http://bioconductor.org/packages/DESeq2/" .
 
-<https://bio.tools/design_metabolic_RNA_labeling> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0099,
-        edam:topic_3170,
-        edam:topic_3407 ;
-    sc:citation <https://doi.org/10.1371/JOURNAL.PCBI.1007252>,
-        "pmcid:PMC6699717",
-        "pubmed:31390362" ;
-    sc:description "> LOW CONFIDENCE! | On the optimal design of metabolic RNA labeling experiments | Alexey Uvarovskii, Isabel Naarmann-de Vries, Christoph Dieterich" ;
-    sc:featureList edam:operation_3501,
-        edam:operation_3715 ;
-    sc:name "design metabolic RNA labeling" ;
-    sc:url "https://github.com/dieterich-lab/DesignMetabolicRNAlabeling" .
+<https://bio.tools/deside-ddi> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workbench" ;
+    sc:applicationSubCategory edam:topic_0108,
+        edam:topic_0203,
+        edam:topic_0602,
+        edam:topic_3336,
+        edam:topic_3374 ;
+    sc:citation <https://doi.org/10.1186/S13321-022-00589-5>,
+        "pmcid:PMC8895921",
+        "pubmed:35246258" ;
+    sc:description "Interpretable prediction of drug-drug interactions using drug-induced gene expressions." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_2454,
+        edam:operation_4009 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "DeSIDE-DDI" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/GIST-CSBL/DeSIDE-DDI" .
 
 <https://bio.tools/designate> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0089,
@@ -168274,7 +164171,7 @@ Package can be installed with the following line of code:.""" ;
     sc:url "https://designate.dbresearch.uni-salzburg.at/" .
 
 <https://bio.tools/desingle> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3168,
@@ -168293,8 +164190,21 @@ Package can be installed with the following line of code:.""" ;
     sc:url "http://bioconductor.org/packages/release/bioc/html/DEsingle.html" ;
     biotools:primaryContact "Zhun Miao" .
 
+<https://bio.tools/desirm> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:description "The main aim of this server is to make more efficient siRNA against a target site using nucleotide mismatch approach." ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "desirm" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/desirm/index.html> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/desirm/team.html" .
+
 <https://bio.tools/desmond> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0176,
         edam:topic_2275 ;
@@ -168308,16 +164218,63 @@ Package can be installed with the following line of code:.""" ;
     sc:softwareVersion "2.4" ;
     sc:url "http://www.deshawresearch.com/resources_desmond.html" .
 
+<https://bio.tools/desp> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application",
+        "Workbench",
+        "Workflow" ;
+    sc:applicationSubCategory edam:topic_0632,
+        edam:topic_0654,
+        edam:topic_0769,
+        edam:topic_3168 ;
+    sc:citation <https://doi.org/10.1186/S12859-022-04723-W>,
+        "pmcid:PMC9116035",
+        "pubmed:35581548" ;
+    sc:description "A flexible framework for systematic error simulation in DNA storage and can be adapted to a wide range of experiment pipelines." ;
+    sc:featureList edam:operation_2422,
+        edam:operation_2426,
+        edam:operation_3195 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "DeSP" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/WangLabTHU/DeSP" .
+
+<https://bio.tools/desso-db> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0160,
+        edam:topic_2229,
+        edam:topic_3169,
+        edam:topic_3794 ;
+    sc:citation <https://doi.org/10.1016/J.CSBJ.2022.06.031>,
+        "pmcid:PMC9233226",
+        "pubmed:35782725" ;
+    sc:description "A web database for sequence and shape motif analyses and identification." ;
+    sc:featureList edam:operation_0238,
+        edam:operation_0239,
+        edam:operation_0438 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Other" ;
+    sc:name "DESSO-DB" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://cloud.osubmi.com/DESSO/" .
+
 <https://bio.tools/destiny> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0928" ;
-            sc:name "Gene expression profile" ;
-            sc:sameAs "http://edamontology.org/data_0928" ] ;
+            sc:additionalType "http://edamontology.org/data_0928" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Gene expression profile" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -168339,7 +164296,7 @@ Package can be installed with the following line of code:.""" ;
     biotools:primaryContact "Philipp Angerer" .
 
 <https://bio.tools/destvi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3170,
@@ -168359,18 +164316,15 @@ Package can be installed with the following line of code:.""" ;
 
 <https://bio.tools/desubs> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3112" ;
-            sc:name "Gene expression matrix" ;
-            sc:sameAs "http://edamontology.org/data_3112" ] ;
+            sc:additionalType "http://edamontology.org/data_3112" ;
+            sc:name "Gene expression matrix" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ],
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:name "Pathway or network" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0602,
@@ -168393,7 +164347,7 @@ Package can be installed with the following line of code:.""" ;
         "Panos Balomenos" .
 
 <https://bio.tools/detect> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0623,
@@ -168413,7 +164367,7 @@ Package can be installed with the following line of code:.""" ;
     biotools:primaryContact "The Parkinson Lab" .
 
 <https://bio.tools/detection-brain-tumor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3304,
@@ -168430,7 +164384,7 @@ Package can be installed with the following line of code:.""" ;
     biotools:primaryContact "pugalenthi R" .
 
 <https://bio.tools/detectir> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0157,
         edam:topic_3175 ;
@@ -168448,7 +164402,7 @@ Package can be installed with the following line of code:.""" ;
     biotools:primaryContact "Dr. Chun Liang" .
 
 <https://bio.tools/detectis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3170,
@@ -168466,8 +164420,31 @@ Package can be installed with the following line of code:.""" ;
     sc:url "https://github.com/AstraZeneca/detectIS" ;
     biotools:primaryContact <https://orcid.org/0000-0002-6308-7540> .
 
+<https://bio.tools/detective-qsar> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_2840,
+        edam:topic_3314,
+        edam:topic_3474,
+        edam:topic_3520 ;
+    sc:citation <https://doi.org/10.1021/ACS.ANALCHEM.2C01667>,
+        "pmcid:PMC9246259",
+        "pubmed:35700270" ;
+    sc:description "Detective-QSAR is a web applications to evaluate the known/unknown spectra aquired by MS" ;
+    sc:featureList edam:operation_3629,
+        edam:operation_3799,
+        edam:operation_3860 ;
+    sc:isAccessibleForFree true ;
+    sc:license "CC-BY-4.0" ;
+    sc:name "Detective-QSAR" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://www.mixture-platform.net/Detective_QSAR_Med_Open/" .
+
 <https://bio.tools/detector> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203 ;
     sc:description "Diagnostic tool which return the propensity of a given mRNA to be translated into peptide." ;
@@ -168484,7 +164461,7 @@ Package can be installed with the following line of code:.""" ;
         "Massimiliano Orsini" .
 
 <https://bio.tools/detedit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0621,
@@ -168501,7 +164478,7 @@ Package can be installed with the following line of code:.""" ;
     sc:url "https://github.com/MarineBioAcousticsRC/DetEdit" .
 
 <https://bio.tools/detonate> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0099,
@@ -168518,7 +164495,7 @@ Package can be installed with the following line of code:.""" ;
     sc:url "http://deweylab.biostat.wisc.edu/detonate/" .
 
 <https://bio.tools/detr-db> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0637,
         edam:topic_3297,
@@ -168533,7 +164510,7 @@ Package can be installed with the following line of code:.""" ;
     sc:url "http://extremebiolab.com/detr-db/" .
 
 <https://bio.tools/deuterater> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0121,
@@ -168551,26 +164528,26 @@ Package can be installed with the following line of code:.""" ;
 
 <https://bio.tools/deuterator> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ],
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Peptide identification" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ],
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein structure" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ] ;
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:encodingFormat "http://edamontology.org/format_3712" ;
+            sc:name "Mass spectrometry data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2992" ;
-            sc:name "Protein structure image" ;
-            sc:sameAs "http://edamontology.org/data_2992" ],
+            sc:additionalType "http://edamontology.org/data_1537" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Protein structure report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1537" ;
-            sc:name "Protein structure report" ;
-            sc:sameAs "http://edamontology.org/data_1537" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2992" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Protein structure image" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -168584,8 +164561,25 @@ Package can be installed with the following line of code:.""" ;
     sc:softwareHelp <http://hdx.florida.scripps.edu/hdx_workbench/tutorials/tutorials.html> ;
     sc:url "http://hdx.florida.scripps.edu/hdx_workbench/Home.html" .
 
+<https://bio.tools/devfold> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Suite" ;
+    sc:applicationSubCategory edam:topic_0593,
+        edam:topic_3304,
+        edam:topic_3384,
+        edam:topic_3418,
+        edam:topic_3444 ;
+    sc:citation <https://doi.org/10.1117/1.NPH.8.4.045003>,
+        "pmcid:PMC8647945",
+        "pubmed:34881349" ;
+    sc:description "devfOLD: A toolbox for designing age-specific fNIRS channel placement." ;
+    sc:featureList edam:operation_3435 ;
+    sc:isAccessibleForFree true ;
+    sc:name "devfOLD" ;
+    sc:url "https://github.com/nirx/devfOLD" .
+
 <https://bio.tools/devils> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3382,
@@ -168603,7 +164597,7 @@ Package can be installed with the following line of code:.""" ;
     biotools:primaryContact <https://orcid.org/0000-0002-5013-1557> .
 
 <https://bio.tools/devomics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3170,
@@ -168623,8 +164617,39 @@ Package can be installed with the following line of code:.""" ;
         "Windows" ;
     sc:url "http://devomics.cn/#/" .
 
+<https://bio.tools/dexma> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1147" ;
+            sc:name "GEO accession number" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_3112" ;
+            sc:name "Gene expression matrix" ] ;
+    bsc:output [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_3112" ;
+            sc:name "Gene expression matrix" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1636" ;
+            sc:name "Heat map" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0091,
+        edam:topic_3308 ;
+    sc:author "Juan Antonio Villatoro-García" ;
+    sc:description "Performing all the steps of gene expression meta-analysis considering the possible existence of missing genes. It provides the necessary functions to be able to perform the different methods of gene expression meta-analysis. In addition, it contains functions to apply quality controls, download GEO datasets and show graphical representations of the results." ;
+    sc:featureList edam:operation_0531,
+        edam:operation_3223,
+        edam:operation_3436 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-2.0" ;
+    sc:name "DExMA" ;
+    sc:softwareHelp <https://bioconductor.org/packages/release/bioc/manuals/DExMA/man/DExMA.pdf>,
+        <https://bioconductor.org/packages/release/bioc/vignettes/DExMA/inst/doc/DExMA.pdf> ;
+    sc:softwareVersion "1.4.2" ;
+    sc:url "https://bioconductor.org/packages/release/bioc/html/DExMA.html" ;
+    biotools:primaryContact "Juan Antonio Villatoro-García" .
+
 <https://bio.tools/dexom> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -168641,7 +164666,7 @@ Package can be installed with the following line of code:.""" ;
     sc:url "https://github.com/MetExplore/dexom" .
 
 <https://bio.tools/dexseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3170 ;
@@ -168663,14 +164688,14 @@ Package can be installed with the following line of code:.""" ;
 
 <https://bio.tools/dexsi> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ] ;
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:encodingFormat "http://edamontology.org/format_3650" ;
+            sc:name "Mass spectrometry data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1636" ;
-            sc:name "Heat map" ;
-            sc:sameAs "http://edamontology.org/data_1636" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1636" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Heat map" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3172 ;
     sc:author "Michael Dagley" ;
@@ -168691,7 +164716,7 @@ As it is designed to detect metabolites irrespective of the extent of isotopic l
     sc:url "https://github.com/DExSI/DExSI" .
 
 <https://bio.tools/dexter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0621,
@@ -168708,7 +164733,7 @@ As it is designed to detect metabolites irrespective of the extent of isotopic l
     sc:url "https://gite.lirmm.fr/menichelli/DExTER" .
 
 <https://bio.tools/dextmp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0622,
@@ -168727,7 +164752,7 @@ As it is designed to detect metabolites irrespective of the extent of isotopic l
     biotools:primaryContact "Support" .
 
 <https://bio.tools/dexus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -168748,7 +164773,7 @@ As it is designed to detect metabolites irrespective of the extent of isotopic l
     biotools:primaryContact <http://orcid.org/0000-0003-2861-5552> .
 
 <https://bio.tools/dfam> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0196,
@@ -168764,7 +164789,7 @@ As it is designed to detect metabolites irrespective of the extent of isotopic l
     sc:url "https://dfam.org" .
 
 <https://bio.tools/dfast> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -168782,8 +164807,51 @@ As it is designed to detect metabolites irrespective of the extent of isotopic l
     sc:url "https://dfast.nig.ac.jp/" ;
     biotools:primaryContact "Yasukazu Nakamura" .
 
+<https://bio.tools/dfbp> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0209,
+        edam:topic_0610,
+        edam:topic_3068,
+        edam:topic_3335 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC323>,
+        "pubmed:35552640" ;
+    sc:description "A database of food-derived bioactive peptides (DFBP), containing a total of 6276 peptide entries in 31 types from different sources." ;
+    sc:featureList edam:operation_2422,
+        edam:operation_3646,
+        edam:operation_4009 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Other" ;
+    sc:name "DFBP" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://www.cqudfbp.net/" .
+
+<https://bio.tools/dfcnn> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_2275,
+        edam:topic_3336,
+        edam:topic_3373 ;
+    sc:citation <https://doi.org/10.3389/FMOLB.2022.872086>,
+        "pmcid:PMC9200220",
+        "pubmed:35720125" ;
+    sc:description "DFCNN is a deep learning based model for fast identify protein-ligand interaction, and suitable for larget scale drug virtual screening." ;
+    sc:featureList edam:operation_2476,
+        edam:operation_3899,
+        edam:operation_3938 ;
+    sc:license "Other" ;
+    sc:name "DFCNN" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://cbblab.siat.ac.cn/DFCNN/index.php" .
+
 <https://bio.tools/dfdl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -168800,8 +164868,24 @@ As it is designed to detect metabolites irrespective of the extent of isotopic l
     sc:url "https://www.mathworks.com/matlabcentral/fileexchange/57181-tiepvupsu-dfdl" ;
     biotools:primaryContact "Tiep Vu" .
 
+<https://bio.tools/dflpred> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Web application" ;
+    sc:citation <https://doi.org/10.1093/bioinformatics/btw280>,
+        "pmcid:PMC4908364",
+        "pubmed:2730763" ;
+    sc:description "DFLpred webserver is designed for the prediction of disordered flexible linker (DFL). The server generates numeric score for each residue in the input protein sequence that quantifies putative propensity to form a DFL." ;
+    sc:isAccessibleForFree true ;
+    sc:name "DFLpred" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://fanchi.github.io/DFLpred/> ;
+    sc:url "http://biomine.cs.vcu.edu/servers/DFLpred/" .
+
 <https://bio.tools/dfp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203 ;
@@ -168819,7 +164903,7 @@ As it is designed to detect metabolites irrespective of the extent of isotopic l
     biotools:primaryContact "Rodrigo Alvarez-Glez" .
 
 <https://bio.tools/dftbplus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0176,
         edam:topic_2269,
@@ -168833,8 +164917,29 @@ As it is designed to detect metabolites irrespective of the extent of isotopic l
     sc:name "DFTB+" ;
     sc:url "https://dftbplus.org/" .
 
+<https://bio.tools/dg-mapping> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Desktop application" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_3382,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1007/S11517-022-02550-Y>,
+        "pubmed:35525879" ;
+    sc:description "A software package for the analysis of any type of reentry and focal activation of simulated, experimental or clinical data of cardiac arrhythmia." ;
+    sc:featureList edam:operation_0244,
+        edam:operation_0337,
+        edam:operation_1812 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Other" ;
+    sc:name "DG-Mapping" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://dgmapping.ugent.be/examples> ;
+    sc:url "http://www.dgmapping.com" .
+
 <https://bio.tools/dgat-onco> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0203,
@@ -168850,7 +164955,7 @@ As it is designed to detect metabolites irrespective of the extent of isotopic l
     sc:url "https://github.com/zhanghaoyang0/DGAT-onco" .
 
 <https://bio.tools/dgca> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0623,
@@ -168868,7 +164973,7 @@ As it is designed to detect metabolites irrespective of the extent of isotopic l
     biotools:primaryContact "Andrew McKenzie" .
 
 <https://bio.tools/dgcytof> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0121,
         edam:topic_2229,
@@ -168887,14 +164992,12 @@ As it is designed to detect metabolites irrespective of the extent of isotopic l
 
 <https://bio.tools/dgd> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2012" ;
-            sc:name "Sequence coordinates" ;
-            sc:sameAs "http://edamontology.org/data_2012" ] ;
+            sc:additionalType "http://edamontology.org/data_2012" ;
+            sc:name "Sequence coordinates" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:name "Annotation track" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1371/journal.pone.0050653> ;
@@ -168911,7 +165014,7 @@ As it is designed to detect metabolites irrespective of the extent of isotopic l
     biotools:primaryContact "GenOuest platform" .
 
 <https://bio.tools/dgidb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0202,
         edam:topic_0602,
@@ -168928,7 +165031,7 @@ As it is designed to detect metabolites irrespective of the extent of isotopic l
     sc:url "http://www.dgidb.org" .
 
 <https://bio.tools/dginn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0769,
         edam:topic_3053,
@@ -168944,8 +165047,30 @@ As it is designed to detect metabolites irrespective of the extent of isotopic l
     sc:name "DGINN" ;
     sc:url "https://rna-seq.shinyapps.io/DGINN_Pipeline_Visualization/" .
 
+<https://bio.tools/dgl-lifesci> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0602,
+        edam:topic_2258,
+        edam:topic_3070,
+        edam:topic_3314,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1021/ACSOMEGA.1C04017>,
+        "pmcid:PMC8529678",
+        "pubmed:34693143" ;
+    sc:description "Python package for graph neural networks in chemistry and biology" ;
+    sc:featureList edam:operation_3927 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Apache-2.0" ;
+    sc:name "DGL-LifeSci" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://github.com/awslabs/dgl-lifesci/blob/master/CODE_OF_CONDUCT.md> ;
+    sc:url "https://github.com/awslabs/dgl-lifesci" .
+
 <https://bio.tools/dglinker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -168972,7 +165097,7 @@ As it is designed to detect metabolites irrespective of the extent of isotopic l
     sc:url "https://dglinker.rosalind.kcl.ac.uk/" .
 
 <https://bio.tools/dgpredictor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0602,
         edam:topic_0821,
@@ -168989,7 +165114,7 @@ As it is designed to detect metabolites irrespective of the extent of isotopic l
     biotools:primaryContact <https://orcid.org/0000-0002-1508-1398> .
 
 <https://bio.tools/dgraph> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0634,
@@ -169005,7 +165130,7 @@ As it is designed to detect metabolites irrespective of the extent of isotopic l
     sc:url "https://github.com/bjmnbraun/DGraph" .
 
 <https://bio.tools/dgsea> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2640,
@@ -169022,7 +165147,7 @@ As it is designed to detect metabolites irrespective of the extent of isotopic l
     sc:url "https://jamesjoly.github.io/DGSEA/" .
 
 <https://bio.tools/dgt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -169039,7 +165164,7 @@ As it is designed to detect metabolites irrespective of the extent of isotopic l
     biotools:primaryContact "Liangjian Deng" .
 
 <https://bio.tools/dgva> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0622,
@@ -169063,7 +165188,7 @@ As it is designed to detect metabolites irrespective of the extent of isotopic l
     biotools:primaryContact "DGVa Helpdesk" .
 
 <https://bio.tools/dgw> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0623,
         edam:topic_3169,
@@ -169084,7 +165209,7 @@ As it is designed to detect metabolites irrespective of the extent of isotopic l
     biotools:primaryContact "Saulius Lukauskas" .
 
 <https://bio.tools/dhcl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -169107,7 +165232,7 @@ As it is designed to detect metabolites irrespective of the extent of isotopic l
     sc:url "http://cropnet.pl/dhcl/" .
 
 <https://bio.tools/dhga> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -169123,8 +165248,22 @@ As it is designed to detect metabolites irrespective of the extent of isotopic l
     sc:url "https://cran.r-project.org/web/packages/dhga/" ;
     biotools:primaryContact "Samarendra Das" .
 
+<https://bio.tools/dhi-gan> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workbench" ;
+    sc:applicationSubCategory edam:topic_2815,
+        edam:topic_3384,
+        edam:topic_3954 ;
+    sc:citation <https://doi.org/10.1109/TNNLS.2022.3159781>,
+        "pubmed:35333725" ;
+    sc:description "Improving Dental-Based Human Identification Using Generative Adversarial Networks" ;
+    sc:featureList edam:operation_2409,
+        edam:operation_3443 ;
+    sc:name "DHI-GAN" ;
+    sc:url "https://github.com/sculyi/MedicalImages/" .
+
 <https://bio.tools/dhrls> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0634,
         edam:topic_3053,
@@ -169140,7 +165279,7 @@ As it is designed to detect metabolites irrespective of the extent of isotopic l
     sc:url "https://github.com/guofei-tju/DHRLS" .
 
 <https://bio.tools/dhsmap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3053 ;
@@ -169158,7 +165297,7 @@ As it is designed to detect metabolites irrespective of the extent of isotopic l
     sc:url "http://www.stat.uchicago.edu/~mcpeek/software/dhsmap/" .
 
 <https://bio.tools/di2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0637,
         edam:topic_2269,
@@ -169176,8 +165315,28 @@ As it is designed to detect metabolites irrespective of the extent of isotopic l
     sc:operatingSystem "Linux" ;
     sc:url "https://github.com/JupitersMight/DI2" .
 
+<https://bio.tools/diagaf> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0080,
+        edam:topic_0081,
+        edam:topic_0749 ;
+    sc:citation <https://doi.org/10.1109/TCBB.2021.3127879>,
+        "pubmed:34780330" ;
+    sc:description "A More Accurate and Efficient Pre-Alignment Filter for Sequence Alignment." ;
+    sc:featureList edam:operation_0292,
+        edam:operation_3096,
+        edam:operation_3695 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "DiagAF" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/BioLab-cz/DiagAF" .
+
 <https://bio.tools/diagnotop> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -169198,7 +165357,7 @@ As it is designed to detect metabolites irrespective of the extent of isotopic l
         <https://orcid.org/0000-0002-9427-543X> .
 
 <https://bio.tools/dial> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0797,
@@ -169219,7 +165378,7 @@ As it is designed to detect metabolites irrespective of the extent of isotopic l
     biotools:primaryContact "Clote Structural Biology Lab" .
 
 <https://bio.tools/dialib> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -169237,7 +165396,7 @@ As it is designed to detect metabolites irrespective of the extent of isotopic l
     sc:url "https://github.com/bschulzlab/DIALib" .
 
 <https://bio.tools/dialign> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0196 ;
@@ -169256,7 +165415,7 @@ As it is designed to detect metabolites irrespective of the extent of isotopic l
     biotools:primaryContact "layal@gobics.de" .
 
 <https://bio.tools/dialign-tx> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2814,
         edam:topic_3542 ;
@@ -169274,7 +165433,7 @@ As it is designed to detect metabolites irrespective of the extent of isotopic l
     biotools:primaryContact "Amarendran R. Subramanian" .
 
 <https://bio.tools/dials> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_2814,
@@ -169292,7 +165451,7 @@ As it is designed to detect metabolites irrespective of the extent of isotopic l
     biotools:primaryContact "Support" .
 
 <https://bio.tools/diamond> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080 ;
@@ -169306,7 +165465,7 @@ As it is designed to detect metabolites irrespective of the extent of isotopic l
     sc:url "https://github.com/bbuchfink/diamond" .
 
 <https://bio.tools/diamund> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_2533 ;
@@ -169320,8 +165479,32 @@ As it is designed to detect metabolites irrespective of the extent of isotopic l
     sc:softwareHelp <https://ccb.jhu.edu/software/diamund/index.shtml#params> ;
     sc:url "https://ccb.jhu.edu/software/diamund/index.shtml" .
 
+<https://bio.tools/diana> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_3063,
+        edam:topic_3303,
+        edam:topic_3384,
+        edam:topic_3452,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1007/S10278-021-00488-5>,
+        "pmcid:PMC8669082",
+        "pubmed:34727303" ;
+    sc:description "DIANA is a DICOM imaging informatics platform that can be attached to the clinical systems with a very small footprint, and then tuned to support a range of tasks from high-resolution image archival to cohort discovery to radiation dose monitoring. It provides DICOM services, image data indexing, REST endpoints for scripting, and user access control through an amalgamation of free and free and open source (FOSS) systems." ;
+    sc:featureList edam:operation_2422,
+        edam:operation_3283,
+        edam:operation_3443,
+        edam:operation_3760 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "DIANA" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/derekmerck/diana2" .
+
 <https://bio.tools/diana-lncbase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0204 ;
     sc:citation <https://doi.org/10.1093/nar/gks1246>,
@@ -169340,7 +165523,7 @@ As it is designed to detect metabolites irrespective of the extent of isotopic l
     sc:url "http://www.microrna.gr/LncBase/" .
 
 <https://bio.tools/diana-map> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0659,
@@ -169359,7 +165542,7 @@ As it is designed to detect metabolites irrespective of the extent of isotopic l
     sc:url "https://github.com/athalexiou/DIANA-mAP" .
 
 <https://bio.tools/diana-microt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0154,
@@ -169391,7 +165574,7 @@ It predicts targets for miRNAs and provides functional information on the predic
     biotools:primaryContact "Contact Form" .
 
 <https://bio.tools/diana-mirextra> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0203 ;
     sc:citation <https://doi.org/10.1093/nar/gkw455>,
@@ -169413,7 +165596,7 @@ It predicts targets for miRNAs and provides functional information on the predic
     sc:url "http://www.microrna.gr/mirextrav2" .
 
 <https://bio.tools/diana-mirgen> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0114,
         edam:topic_0203 ;
@@ -169437,10 +165620,9 @@ It predicts targets for miRNAs and provides functional information on the predic
 
 <https://bio.tools/diana-mirpath> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0842" ;
-            sc:name "Identifier" ;
-            sc:sameAs "http://edamontology.org/data_0842" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0842" ;
+            sc:name "Identifier" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0204 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btp299>,
@@ -169462,7 +165644,7 @@ It predicts targets for miRNAs and provides functional information on the predic
     biotools:primaryContact "Ioannis S Vlachos" .
 
 <https://bio.tools/diana-mited> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0203,
@@ -169483,7 +165665,7 @@ It predicts targets for miRNAs and provides functional information on the predic
     sc:url "http://www.microrna.gr/mited" .
 
 <https://bio.tools/diana_mirpath> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0602,
@@ -169506,7 +165688,7 @@ It predicts targets for miRNAs and provides functional information on the predic
     biotools:primaryContact "Contact form" .
 
 <https://bio.tools/diane> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -169529,7 +165711,7 @@ It predicts targets for miRNAs and provides functional information on the predic
     biotools:primaryContact <https://orcid.org/0000-0002-4595-2457> .
 
 <https://bio.tools/dianna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0154,
@@ -169555,7 +165737,7 @@ It predicts targets for miRNAs and provides functional information on the predic
         "Peter Clote" .
 
 <https://bio.tools/diapasef> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -169572,7 +165754,7 @@ It predicts targets for miRNAs and provides functional information on the predic
     sc:url "https://github.com/Roestlab/dia-pasef" .
 
 <https://bio.tools/diaproteomics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -169588,7 +165770,7 @@ It predicts targets for miRNAs and provides functional information on the predic
     sc:url "https://www.openms.de/diaproteomics/" .
 
 <https://bio.tools/diark> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0621,
@@ -169610,7 +165792,7 @@ It predicts targets for miRNAs and provides functional information on the predic
     biotools:primaryContact "Contact Form" .
 
 <https://bio.tools/diathor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0610,
@@ -169626,8 +165808,30 @@ It predicts targets for miRNAs and provides functional information on the predic
     sc:url "https://limnolab.shinyapps.io/diathor-shiny/" ;
     biotools:primaryContact <https://orcid.org/0000-0001-6324-7930> .
 
+<https://bio.tools/diatoms_org> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0089,
+        edam:topic_0610,
+        edam:topic_0637,
+        edam:topic_3068 ;
+    sc:citation <https://doi.org/10.1080/0269249X.2021.2006790>,
+        "pmcid:PMC9359083",
+        "pubmed:35958044" ;
+    sc:description "Diatoms.org represents such a content curation community, providing open, online access to a vast amount of recent and historical information on North American diatom taxonomy and ecology." ;
+    sc:featureList edam:operation_3436,
+        edam:operation_3946 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "diatoms.org" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://Diatoms.org" .
+
 <https://bio.tools/diatools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -169646,7 +165850,7 @@ It predicts targets for miRNAs and provides functional information on the predic
     sc:url "https://github.com/elolab/diatools" .
 
 <https://bio.tools/dical> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3056 ;
     sc:citation <https://doi.org/10.1101/026591> ;
@@ -169658,7 +165862,7 @@ It predicts targets for miRNAs and provides functional information on the predic
     sc:url "https://dical2.sourceforge.io/" .
 
 <https://bio.tools/dice> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0176,
@@ -169674,7 +165878,7 @@ It predicts targets for miRNAs and provides functional information on the predic
     sc:url "https://portal.if.usp.br/dice" .
 
 <https://bio.tools/dice-xmbd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3382,
@@ -169693,7 +165897,7 @@ Dice-XMBD1 is marker agnostic and can perform cell segmentation for multiplexed
     sc:url "https://github.com/xmuyulab/Dice-XMBD" .
 
 <https://bio.tools/dicer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3379,
@@ -169714,7 +165918,7 @@ Dice-XMBD1 is marker agnostic and can perform cell segmentation for multiplexed
     biotools:primaryContact "Derek Chiu" .
 
 <https://bio.tools/dicer-mri> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_3384,
         edam:topic_3444 ;
@@ -169729,7 +165933,7 @@ Dice-XMBD1 is marker agnostic and can perform cell segmentation for multiplexed
     sc:url "https://github.com/BMHLab/DiCER" .
 
 <https://bio.tools/dichromatch> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0593,
@@ -169751,7 +165955,7 @@ Dice-XMBD1 is marker agnostic and can perform cell segmentation for multiplexed
     biotools:primaryContact "PCDDB Support" .
 
 <https://bio.tools/dichroweb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_1317,
@@ -169772,8 +165976,28 @@ Dice-XMBD1 is marker agnostic and can perform cell segmentation for multiplexed
     sc:url "http://dichroweb.cryst.bbk.ac.uk/html/home.shtml" ;
     biotools:primaryContact "Contact Form" .
 
+<https://bio.tools/dicoderma> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Plug-in" ;
+    sc:applicationSubCategory edam:topic_3384,
+        edam:topic_3404,
+        edam:topic_3444,
+        edam:topic_3452,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1007/S10278-022-00636-5>,
+        "pmcid:PMC9054111",
+        "pubmed:35488074" ;
+    sc:description "DICODerma is a tool and a preliminary standard to reconcile the best of both worlds - the simplicity of consumer image tools and the DICOM and PACS-based enterprise imaging infrastructure." ;
+    sc:featureList edam:operation_2422,
+        edam:operation_3435,
+        edam:operation_3443 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Other" ;
+    sc:name "DICODerma" ;
+    sc:url "https://github.com/dermatologist/dicom-dermatology" .
+
 <https://bio.tools/dicoexpress> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0203,
         edam:topic_0780,
@@ -169790,7 +166014,7 @@ Dice-XMBD1 is marker agnostic and can perform cell segmentation for multiplexed
     sc:url "https://forgemia.inra.fr/GNet/dicoexpress" .
 
 <https://bio.tools/dicom-rt-3d-semantic-segmentation-medical-images> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3306,
         edam:topic_3384,
@@ -169808,7 +166032,7 @@ Dice-XMBD1 is marker agnostic and can perform cell segmentation for multiplexed
     biotools:primaryContact "Takuji Fukumoto" .
 
 <https://bio.tools/dicom-series-reader> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -169824,7 +166048,7 @@ Dice-XMBD1 is marker agnostic and can perform cell segmentation for multiplexed
     biotools:primaryContact "Frank Zijlstra" .
 
 <https://bio.tools/dicom_wsi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0605,
         edam:topic_3303,
@@ -169843,7 +166067,7 @@ Dice-XMBD1 is marker agnostic and can perform cell segmentation for multiplexed
     sc:url "https://dev.bio.tools/pub2tools2021__dicom_wsi/edit" .
 
 <https://bio.tools/dicomannotator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3382,
         edam:topic_3416,
@@ -169861,14 +166085,14 @@ Dice-XMBD1 is marker agnostic and can perform cell segmentation for multiplexed
 
 <https://bio.tools/dicomtypetranslation> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3442" ;
-            sc:name "MRI image" ;
-            sc:sameAs "http://edamontology.org/data_3442" ] ;
+            sc:additionalType "http://edamontology.org/data_3442" ;
+            sc:encodingFormat "http://edamontology.org/format_3548" ;
+            sc:name "MRI image" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2526" ;
-            sc:name "Text data" ;
-            sc:sameAs "http://edamontology.org/data_2526" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2526" ;
+            sc:encodingFormat "http://edamontology.org/format_3788" ;
+            sc:name "Text data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:description "Library for extracting and converting DICOM file metadata for persistence and indexing in a SQL database" ;
     sc:featureList edam:operation_2422 ;
@@ -169879,14 +166103,13 @@ Dice-XMBD1 is marker agnostic and can perform cell segmentation for multiplexed
 
 <https://bio.tools/dictybase> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2295" ;
-            sc:name "Gene ID" ;
-            sc:sameAs "http://edamontology.org/data_2295" ] ;
+            sc:additionalType "http://edamontology.org/data_2295" ;
+            sc:name "Gene ID" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0916" ;
-            sc:name "Gene report" ;
-            sc:sameAs "http://edamontology.org/data_0916" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0916" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Gene report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0621 ;
     sc:citation <https://doi.org/10.1007/978-1-62703-302-2_4> ;
@@ -169902,14 +166125,13 @@ Dice-XMBD1 is marker agnostic and can perform cell segmentation for multiplexed
 
 <https://bio.tools/dictybase_update_2011> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2295" ;
-            sc:name "Gene ID" ;
-            sc:sameAs "http://edamontology.org/data_2295" ] ;
+            sc:additionalType "http://edamontology.org/data_2295" ;
+            sc:name "Gene ID" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0916" ;
-            sc:name "Gene report" ;
-            sc:sameAs "http://edamontology.org/data_0916" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0916" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Gene report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0622,
@@ -169935,7 +166157,7 @@ Dice-XMBD1 is marker agnostic and can perform cell segmentation for multiplexed
     sc:url "http://www.dictybase.org" .
 
 <https://bio.tools/dictyexpress> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0203,
@@ -169956,18 +166178,18 @@ Dice-XMBD1 is marker agnostic and can perform cell segmentation for multiplexed
 
 <https://bio.tools/dictyoglyc> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2955" ;
-            sc:name "Sequence report" ;
-            sc:sameAs "http://edamontology.org/data_2955" ],
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Protein features" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2955" ;
+            sc:encodingFormat "http://edamontology.org/format_2333" ;
+            sc:name "Sequence report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_3510 ;
@@ -169985,8 +166207,27 @@ Dice-XMBD1 is marker agnostic and can perform cell segmentation for multiplexed
     sc:url "http://cbs.dtu.dk/services/DictyOGlyc/" ;
     biotools:primaryContact "Ramneek Gupta" .
 
+<https://bio.tools/did-anet> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_3382,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1109/TIP.2021.3127850>,
+        "pubmed:34793301" ;
+    sc:description "Defocus Image Deblurring Network With Defocus Map Estimation as Auxiliary Task." ;
+    sc:featureList edam:operation_2429,
+        edam:operation_3799 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "DID-ANet" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/xytmhy/DID-ANet-Defocus-Deblurring" .
+
 <https://bio.tools/dida> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
@@ -170013,7 +166254,7 @@ Dice-XMBD1 is marker agnostic and can perform cell segmentation for multiplexed
     biotools:primaryContact <https://orcid.org/0000-0003-3645-1455> .
 
 <https://bio.tools/diffGrad> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3315,
         edam:topic_3382,
         edam:topic_3474 ;
@@ -170028,18 +166269,16 @@ Abstract Stochastic Gradient Decent (SGD) is one of the core techniques behind t
 
 <https://bio.tools/diffany> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ] ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:name "Pathway or network" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ],
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:name "Pathway or network" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3477" ;
+            sc:name "Image" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0602 ;
@@ -170057,7 +166296,7 @@ Abstract Stochastic Gradient Decent (SGD) is one of the core techniques behind t
     sc:url "http://bioinformatics.psb.ugent.be/supplementary_data/solan/diffany/" .
 
 <https://bio.tools/diffbind> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3169 ;
@@ -170077,7 +166316,7 @@ Abstract Stochastic Gradient Decent (SGD) is one of the core techniques behind t
     biotools:primaryContact "Rory Stark" .
 
 <https://bio.tools/diffbum-hmm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0632,
         edam:topic_0659,
@@ -170098,8 +166337,29 @@ Abstract Stochastic Gradient Decent (SGD) is one of the core techniques behind t
     biotools:primaryContact <https://orcid.org/0000-0003-4387-1271>,
         "Guido Sanguinetti" .
 
+<https://bio.tools/diffchipl> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0128,
+        edam:topic_0769,
+        edam:topic_3169,
+        edam:topic_3170,
+        edam:topic_3295 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC498>,
+        "pubmed:35809062" ;
+    sc:description "A differential peak analysis method for high throughput sequencing data with biological replicates based on limma." ;
+    sc:featureList edam:operation_3215,
+        edam:operation_3222,
+        edam:operation_3435 ;
+    sc:license "Apache-2.0" ;
+    sc:name "DiffChIPL" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/yancychy/DiffChIPL" .
+
 <https://bio.tools/diffcoexp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3168,
@@ -170119,7 +166379,7 @@ Abstract Stochastic Gradient Decent (SGD) is one of the core techniques behind t
     biotools:primaryContact "Wenbin Wei" .
 
 <https://bio.tools/diffcyt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_2229 ;
@@ -170138,7 +166398,7 @@ Abstract Stochastic Gradient Decent (SGD) is one of the core techniques behind t
     biotools:primaryContact "Lukas M. Weber" .
 
 <https://bio.tools/differential-feature> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -170158,14 +166418,14 @@ Abstract Stochastic Gradient Decent (SGD) is one of the core techniques behind t
 
 <https://bio.tools/differential_rna-seq_pipeline> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3495" ;
-            sc:name "RNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3495" ] ;
+            sc:additionalType "http://edamontology.org/data_3495" ;
+            sc:encodingFormat "http://edamontology.org/format_1932" ;
+            sc:name "RNA sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3134" ;
-            sc:name "Gene transcript report" ;
-            sc:sameAs "http://edamontology.org/data_3134" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3134" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Gene transcript report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3308 ;
     sc:citation <https://doi.org/10.1038/nprot.2012.016> ;
@@ -170181,7 +166441,7 @@ Abstract Stochastic Gradient Decent (SGD) is one of the core techniques behind t
     biotools:primaryContact "The Norwegian Bioinformatics Platform (ELIXIR-Norway) Helpdesk" .
 
 <https://bio.tools/diffgeneanalysis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203 ;
@@ -170199,7 +166459,7 @@ Abstract Stochastic Gradient Decent (SGD) is one of the core techniques behind t
     biotools:primaryContact "Choudary Jagarlamudi" .
 
 <https://bio.tools/diffgr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3169,
@@ -170214,18 +166474,18 @@ Abstract Stochastic Gradient Decent (SGD) is one of the core techniques behind t
 
 <https://bio.tools/diffhic> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ],
+            sc:additionalType "http://edamontology.org/data_2589" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Hierarchy" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2589" ;
-            sc:name "Hierarchy" ;
-            sc:sameAs "http://edamontology.org/data_2589" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3168,
@@ -170248,26 +166508,26 @@ Abstract Stochastic Gradient Decent (SGD) is one of the core techniques behind t
 
 <https://bio.tools/difflogo> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3495" ;
-            sc:name "RNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3495" ],
+            sc:additionalType "http://edamontology.org/data_2082" ;
+            sc:encodingFormat "http://edamontology.org/format_1919" ;
+            sc:name "Matrix" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ],
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:encodingFormat "http://edamontology.org/format_1919" ;
+            sc:name "DNA sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2082" ;
-            sc:name "Matrix" ;
-            sc:sameAs "http://edamontology.org/data_2082" ],
+            sc:additionalType "http://edamontology.org/data_3495" ;
+            sc:encodingFormat "http://edamontology.org/format_1919" ;
+            sc:name "RNA sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3494" ;
-            sc:name "DNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3494" ] ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_1919" ;
+            sc:name "Protein sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3603" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0622 ;
@@ -170287,7 +166547,7 @@ Abstract Stochastic Gradient Decent (SGD) is one of the core techniques behind t
     biotools:primaryContact <http://orcid.org/0000-0001-8032-9890> .
 
 <https://bio.tools/diffloop> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0097 ;
@@ -170305,7 +166565,7 @@ Abstract Stochastic Gradient Decent (SGD) is one of the core techniques behind t
     biotools:primaryContact "Caleb Lareau" .
 
 <https://bio.tools/diffmeanvar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3295 ;
     sc:citation <https://doi.org/10.1186/s12859-018-2185-3> ;
@@ -170322,7 +166582,7 @@ Abstract Stochastic Gradient Decent (SGD) is one of the core techniques behind t
     biotools:primaryContact "Weiliang Qiu" .
 
 <https://bio.tools/diffreps> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Script" ;
     sc:applicationSubCategory edam:topic_0622,
@@ -170340,18 +166600,15 @@ Abstract Stochastic Gradient Decent (SGD) is one of the core techniques behind t
 
 <https://bio.tools/diffseq> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ],
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:name "Sequence features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0097 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -170381,7 +166638,7 @@ Abstract Stochastic Gradient Decent (SGD) is one of the core techniques behind t
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/diffseq.html" .
 
 <https://bio.tools/diffseq_ws_husar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:description "Find differences between nearly identical sequences." ;
@@ -170392,7 +166649,7 @@ Abstract Stochastic Gradient Decent (SGD) is one of the core techniques behind t
     sc:url "http://genius.embnet.dkfz-heidelberg.de/menu/hobit/embdoc/diffseq.html" .
 
 <https://bio.tools/diffslc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0203,
@@ -170411,14 +166668,14 @@ Abstract Stochastic Gradient Decent (SGD) is one of the core techniques behind t
 
 <https://bio.tools/diffusion> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1025" ;
-            sc:name "Gene identifier" ;
-            sc:sameAs "http://edamontology.org/data_1025" ] ;
+            sc:additionalType "http://edamontology.org/data_1025" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Gene identifier" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:encodingFormat "http://edamontology.org/format_3617" ;
+            sc:name "Pathway or network" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0625,
@@ -170439,16 +166696,34 @@ Abstract Stochastic Gradient Decent (SGD) is one of the core techniques behind t
     sc:url "http://apps.cytoscape.org/apps/Diffusion" ;
     biotools:primaryContact "Daniel E. Carlin" .
 
+<https://bio.tools/diffusionlab> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Desktop application",
+        "Library" ;
+    sc:applicationSubCategory edam:topic_0176,
+        edam:topic_3370,
+        edam:topic_3382 ;
+    sc:citation <https://doi.org/10.1038/S41598-022-13446-0>,
+        "pmcid:PMC9187757",
+        "pubmed:35689015" ;
+    sc:description "DiffusionLab is software designed to extract valuable information about the motion from single-molecule or particle trajectories obtained with e.g. super-resolution localization microscopy." ;
+    sc:featureList edam:operation_0244,
+        edam:operation_3457,
+        edam:operation_3890 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "DiffusionLab" ;
+    sc:softwareHelp <https://diffusionlab.readthedocs.io/en/latest/> ;
+    sc:url "https://github.com/ErikMaris/DiffusionLab" .
+
 <https://bio.tools/diffustats> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1772" ;
-            sc:name "Score" ;
-            sc:sameAs "http://edamontology.org/data_1772" ] ;
+            sc:additionalType "http://edamontology.org/data_1772" ;
+            sc:name "Score" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1772" ;
-            sc:name "Score" ;
-            sc:sameAs "http://edamontology.org/data_1772" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1772" ;
+            sc:name "Score" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3307,
         edam:topic_3391 ;
@@ -170462,7 +166737,7 @@ Abstract Stochastic Gradient Decent (SGD) is one of the core techniques behind t
     biotools:primaryContact <https://orcid.org/0000-0002-6426-8204> .
 
 <https://bio.tools/diffutr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0769,
@@ -170479,14 +166754,14 @@ Abstract Stochastic Gradient Decent (SGD) is one of the core techniques behind t
 
 <https://bio.tools/dig> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -170501,14 +166776,14 @@ Abstract Stochastic Gradient Decent (SGD) is one of the core techniques behind t
 
 <https://bio.tools/dig2> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1193" ;
-            sc:name "Tool name (FASTA)" ;
-            sc:sameAs "http://edamontology.org/data_1193" ] ;
+            sc:additionalType "http://edamontology.org/data_1193" ;
+            sc:encodingFormat "http://edamontology.org/format_1332" ;
+            sc:name "Tool name (FASTA)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1238" ;
-            sc:name "Proteolytic digest" ;
-            sc:sameAs "http://edamontology.org/data_1238" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1238" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Proteolytic digest" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121 ;
     sc:description "Simple but flexible in silico digester of protein sequences in the FASTA format. It allows for almost any enzyme to be simulated, including \"MS/MS\" enzymes to generate CID or ECD/ETD fragments." ;
@@ -170524,14 +166799,14 @@ Abstract Stochastic Gradient Decent (SGD) is one of the core techniques behind t
 
 <https://bio.tools/digenome-seq> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0848" ;
-            sc:name "Raw sequence" ;
-            sc:sameAs "http://edamontology.org/data_0848" ] ;
+            sc:additionalType "http://edamontology.org/data_0848" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Raw sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:encodingFormat "http://edamontology.org/format_3617" ;
+            sc:name "Sequence features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3047,
@@ -170550,7 +166825,7 @@ Abstract Stochastic Gradient Decent (SGD) is one of the core techniques behind t
     sc:url "http://www.rgenome.net/digenome-js/#!" .
 
 <https://bio.tools/digepred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0625,
@@ -170565,8 +166840,34 @@ Abstract Stochastic Gradient Decent (SGD) is one of the core techniques behind t
     biotools:primaryContact "Jens Meiler",
         "John A. Capra" .
 
+<https://bio.tools/digest> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library",
+        "Web API",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0602,
+        edam:topic_0634,
+        edam:topic_3053,
+        edam:topic_3396,
+        edam:topic_3407 ;
+    sc:citation <https://doi.org/10.1093/BIB/BBAC247>,
+        "pubmed:35753693" ;
+    sc:description "DIGEST is a (“validation of disease and gene sets, clusterings or subnetworks”), is a Python-based validation tool available as a webinterface, as a standalone package, or over a REST API." ;
+    sc:featureList edam:operation_2428,
+        edam:operation_2436,
+        edam:operation_3432 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "DIGEST" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://digest-validation.net/documentation>,
+        <https://github.com/bionetslab/digest-tutorial> ;
+    sc:url "https://digest-validation.net" .
+
 <https://bio.tools/digger> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -170584,7 +166885,7 @@ Abstract Stochastic Gradient Decent (SGD) is one of the core techniques behind t
     sc:url "https://exbio.wzw.tum.de/digger" .
 
 <https://bio.tools/diggit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0199,
@@ -170602,7 +166903,7 @@ Abstract Stochastic Gradient Decent (SGD) is one of the core techniques behind t
     biotools:primaryContact "Mariano J Alvarez" .
 
 <https://bio.tools/digilogger> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_0820,
@@ -170622,7 +166923,7 @@ digilogger is available as the latest development version of the code by using t
     sc:url "https://github.com/michbur/digilogger" .
 
 <https://bio.tools/digis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0160,
@@ -170645,14 +166946,12 @@ As an input, digIS accepts contigs in FASTA format. Optionally, the user can pro
 
 <https://bio.tools/digit> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:name "Protein sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0896" ;
-            sc:name "Protein report" ;
-            sc:sameAs "http://edamontology.org/data_0896" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0896" ;
+            sc:name "Protein report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0082 ;
@@ -170670,7 +166969,7 @@ As an input, digIS accepts contigs in FASTA format. Optionally, the user can pro
     biotools:primaryContact "Paolo Marcatili" .
 
 <https://bio.tools/digital-encoding-decoding-dna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0654 ;
@@ -170685,7 +166984,7 @@ As an input, digIS accepts contigs in FASTA format. Optionally, the user can pro
     biotools:primaryContact "Adithya Popuri" .
 
 <https://bio.tools/digital-mammography-image-enhancement> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3382 ;
     sc:description "MATLAB script for enhancement of digital mammography images." ;
@@ -170700,7 +166999,7 @@ As an input, digIS accepts contigs in FASTA format. Optionally, the user can pro
     biotools:primaryContact "Akshay Gore" .
 
 <https://bio.tools/digsee> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -170722,7 +167021,7 @@ As an input, digIS accepts contigs in FASTA format. Optionally, the user can pro
     sc:url "http://gcancer.org/digsee" .
 
 <https://bio.tools/dilimot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0154,
@@ -170741,7 +167040,7 @@ As an input, digIS accepts contigs in FASTA format. Optionally, the user can pro
         "Rob Russell (questions, comments or bug reports)" .
 
 <https://bio.tools/dils> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0199,
@@ -170759,14 +167058,13 @@ As an input, digIS accepts contigs in FASTA format. Optionally, the user can pro
 
 <https://bio.tools/dima> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1138" ;
-            sc:name "Pfam accession number" ;
-            sc:sameAs "http://edamontology.org/data_1138" ] ;
+            sc:additionalType "http://edamontology.org/data_1138" ;
+            sc:name "Pfam accession number" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0906" ;
-            sc:name "Protein interaction data" ;
-            sc:sameAs "http://edamontology.org/data_0906" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0906" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Protein interaction data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0128 ;
     sc:citation <https://doi.org/10.1093/nar/gkm996> ;
@@ -170782,7 +167080,7 @@ As an input, digIS accepts contigs in FASTA format. Optionally, the user can pro
     sc:url "http://webclu.bio.wzw.tum.de/dima2/" .
 
 <https://bio.tools/dima_imputation> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -170802,7 +167100,7 @@ As an input, digIS accepts contigs in FASTA format. Optionally, the user can pro
     sc:url "http://github.com/kreutz-lab/DIMAR" .
 
 <https://bio.tools/dimedr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
         edam:topic_3172,
@@ -170816,8 +167114,27 @@ As an input, digIS accepts contigs in FASTA format. Optionally, the user can pro
     sc:name "DIMEDR" ;
     sc:url "https://chemdata.nist.gov/dokuwiki/doku.php?id=chemdata:dimedr" .
 
+<https://bio.tools/dimelo-seq> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workflow" ;
+    sc:applicationSubCategory edam:topic_0128,
+        edam:topic_2885,
+        edam:topic_3125,
+        edam:topic_3169,
+        edam:topic_3173 ;
+    sc:citation <https://doi.org/10.1038/S41592-022-01475-6>,
+        "pubmed:35396487" ;
+    sc:description "A long-read, single-molecule method for mapping protein-DNA interactions genome wide." ;
+    sc:featureList edam:operation_3185,
+        edam:operation_3186,
+        edam:operation_3222 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "DiMeLo-seq" ;
+    sc:url "https://github.com/amaslan/dimelo-seq/" .
+
 <https://bio.tools/dimm-sc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0623,
         edam:topic_3170,
@@ -170835,7 +167152,7 @@ As an input, digIS accepts contigs in FASTA format. Optionally, the user can pro
         "Wei Chen" .
 
 <https://bio.tools/dimont> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3169,
@@ -170851,7 +167168,7 @@ As an input, digIS accepts contigs in FASTA format. Optionally, the user can pro
     sc:url "http://www.jstacs.de/index.php/Dimont" .
 
 <https://bio.tools/dimpl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0659,
@@ -170869,7 +167186,7 @@ As an input, digIS accepts contigs in FASTA format. Optionally, the user can pro
     sc:url "https://github.com/breakerlab/dimpl" .
 
 <https://bio.tools/dimsum> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0634,
@@ -170886,7 +167203,7 @@ As an input, digIS accepts contigs in FASTA format. Optionally, the user can pro
     sc:url "https://github.com/lehner-lab/DiMSum" .
 
 <https://bio.tools/dinamelt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0097,
@@ -170906,7 +167223,7 @@ As an input, digIS accepts contigs in FASTA format. Optionally, the user can pro
     biotools:primaryContact "Contact Form" .
 
 <https://bio.tools/dinamo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0160,
@@ -170926,30 +167243,24 @@ As an input, digIS accepts contigs in FASTA format. Optionally, the user can pro
 
 <https://bio.tools/dinar> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ],
+            sc:additionalType "http://edamontology.org/data_3108" ;
+            sc:name "Experimental measurement" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3108" ;
-            sc:name "Experimental measurement" ;
-            sc:sameAs "http://edamontology.org/data_3108" ] ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:name "Pathway or network" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2984" ;
-            sc:name "Pathway or network report" ;
-            sc:sameAs "http://edamontology.org/data_2984" ],
+            sc:additionalType "http://edamontology.org/data_2082" ;
+            sc:name "Matrix" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2082" ;
-            sc:name "Matrix" ;
-            sc:sameAs "http://edamontology.org/data_2082" ],
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:name "Pathway or network" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ],
+            sc:additionalType "http://edamontology.org/data_2984" ;
+            sc:name "Pathway or network report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:name "Image" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0091,
@@ -170984,7 +167295,7 @@ As an input, digIS accepts contigs in FASTA format. Optionally, the user can pro
     biotools:primaryContact <http://orcid.org/0000-0002-1669-6482> .
 
 <https://bio.tools/dinax> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -171000,7 +167311,7 @@ As an input, digIS accepts contigs in FASTA format. Optionally, the user can pro
     sc:url "http://slsdb.manipal.edu/dinax" .
 
 <https://bio.tools/dinc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_2275,
@@ -171018,8 +167329,36 @@ As an input, digIS accepts contigs in FASTA format. Optionally, the user can pro
     sc:url "http://dinc.kavrakilab.org/" ;
     biotools:primaryContact "Contact form" .
 
+<https://bio.tools/dinc-covid> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1463" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Small molecule structure" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0176,
+        edam:topic_0209,
+        edam:topic_2275,
+        edam:topic_2828 ;
+    sc:citation <https://doi.org/10.1016/J.COMPBIOMED.2021.104943>,
+        "pmcid:PMC8518241",
+        "pubmed:34717233" ;
+    sc:description "A webserver for ensemble docking with flexible SARS-CoV-2 proteins." ;
+    sc:featureList edam:operation_0478,
+        edam:operation_2476,
+        edam:operation_3454,
+        edam:operation_3891,
+        edam:operation_4009 ;
+    sc:isAccessibleForFree true ;
+    sc:name "DINC-COVID" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://dinc-covid.kavrakilab.org" .
+
 <https://bio.tools/dindel> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_2885 ;
     sc:citation "pubmed:20980555" ;
@@ -171034,7 +167373,7 @@ As an input, digIS accepts contigs in FASTA format. Optionally, the user can pro
     biotools:primaryContact "Dinsel Support" .
 
 <https://bio.tools/dinies> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0154,
@@ -171059,7 +167398,7 @@ As an input, digIS accepts contigs in FASTA format. Optionally, the user can pro
     biotools:primaryContact "Feedback Form" .
 
 <https://bio.tools/dino> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0203,
@@ -171076,14 +167415,14 @@ As an input, digIS accepts contigs in FASTA format. Optionally, the user can pro
 
 <https://bio.tools/dinosaur> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3244" ;
+            sc:name "Mass spectrometry spectra" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121 ;
     sc:citation <https://doi.org/10.1021/acs.jproteome.6b00016>,
@@ -171102,7 +167441,7 @@ As an input, digIS accepts contigs in FASTA format. Optionally, the user can pro
     sc:url "https://github.com/fickludd/dinosaur/" .
 
 <https://bio.tools/dintd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_2640,
@@ -171118,7 +167457,7 @@ As an input, digIS accepts contigs in FASTA format. Optionally, the user can pro
     sc:url "https://github.com/SVanalysis/DINTD" .
 
 <https://bio.tools/dintor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -171139,7 +167478,7 @@ As an input, digIS accepts contigs in FASTA format. Optionally, the user can pro
     biotools:primaryContact "Christian Weichenberger" .
 
 <https://bio.tools/dip> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0128,
@@ -171161,12 +167500,25 @@ As an input, digIS accepts contigs in FASTA format. Optionally, the user can pro
     sc:url "http://dip.doe-mbi.ucla.edu/" ;
     biotools:primaryContact "David Eisemberg" .
 
+<https://bio.tools/dipcell> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:citation <https://doi.org/10.1038/srep04668> ;
+    sc:description "DiPCell is a webserver for the predicting inhibitory activity of unknown molecules and designing their analogs against pancreatic cancer cell lines." ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "dipcell" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/dipcell/index.html> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/dipcell/index.html" .
+
 <https://bio.tools/dipcheck> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:name "Protein structure" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_1317 ;
     sc:citation "pubmed:28989721" ;
@@ -171178,8 +167530,51 @@ The tool uses a Euclidian 3D space (DipSpace) of the orthogonal descriptors of t
     sc:name "Dipcheck" ;
     sc:url "http://cluster.embl-hamburg.de/cgi-bin/dipcheck/dipcheck.cgi" .
 
+<https://bio.tools/dipend> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0176,
+        edam:topic_0593,
+        edam:topic_0749,
+        edam:topic_0769 ;
+    sc:citation <https://doi.org/10.3390/BIOM11101505>,
+        "pmcid:PMC8534045",
+        "pubmed:34680137" ;
+    sc:description "An Open-Source Pipeline to Generate Ensembles of Disordered Segments Using Neighbor-Dependent Backbone Preferences." ;
+    sc:featureList edam:operation_2476,
+        edam:operation_2939,
+        edam:operation_3891,
+        edam:operation_3960 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "DIPEND" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/PPKE-Bioinf/DIPEND" .
+
+<https://bio.tools/dipm> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_2269,
+        edam:topic_3577 ;
+    sc:citation <https://doi.org/10.1093/BIOADV/VBAC041>,
+        "pmcid:PMC9245626",
+        "pubmed:35785020" ;
+    sc:description "R package for implementing the Depth Importance in Precision Medicine (DIPM) tree and forest based method" ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3359 ;
+    sc:license "GPL-2.0" ;
+    sc:name "DIPM" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://ysph.yale.edu/c2s2/software/dipm" .
+
 <https://bio.tools/dipole> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -171201,7 +167596,7 @@ The tool uses a Euclidian 3D space (DipSpace) of the orthogonal descriptors of t
     biotools:primaryContact "Clifford Felder" .
 
 <https://bio.tools/dipper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -171218,22 +167613,20 @@ The tool uses a Euclidian 3D space (DipSpace) of the orthogonal descriptors of t
 
 <https://bio.tools/diprodb> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2721" ;
-            sc:name "DiProDB ID" ;
-            sc:sameAs "http://edamontology.org/data_2721" ],
+            sc:additionalType "http://edamontology.org/data_2721" ;
+            sc:name "DiProDB ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:name "Report" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3128" ;
-            sc:name "Nucleic acid structure report" ;
-            sc:sameAs "http://edamontology.org/data_3128" ],
+            sc:additionalType "http://edamontology.org/data_2720" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Dinucleotide property" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2720" ;
-            sc:name "Dinucleotide property" ;
-            sc:sameAs "http://edamontology.org/data_2720" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3128" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Nucleic acid structure report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0097 ;
     sc:citation <https://doi.org/10.1093/nar/gkn597> ;
@@ -171249,7 +167642,7 @@ The tool uses a Euclidian 3D space (DipSpace) of the orthogonal descriptors of t
     biotools:primaryContact "Maik Friedel" .
 
 <https://bio.tools/diprogb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0654 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btp436> ;
@@ -171262,8 +167655,26 @@ The tool uses a Euclidian 3D space (DipSpace) of the orthogonal descriptors of t
     sc:softwareVersion "20100209" ;
     sc:url "http://diprogb.fli-leibniz.de/" .
 
+<https://bio.tools/diproperm> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0092 ;
+    sc:citation <https://doi.org/10.32614/RJ-2021-072>,
+        "pmcid:PMC9202909",
+        "pubmed:35721233" ;
+    sc:description "Direction-projection-permutation (DiProPerm) is an R Package for two-sample hypothesis test for comparing two high-dimensional distributions." ;
+    sc:featureList edam:operation_2238,
+        edam:operation_3891 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "DiProPerm" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://CRAN.R-project.org/package=diproperm" .
+
 <https://bio.tools/dire> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0204,
@@ -171283,7 +167694,7 @@ The tool uses a Euclidian 3D space (DipSpace) of the orthogonal descriptors of t
     biotools:primaryContact "DiRE Support" .
 
 <https://bio.tools/director> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -171301,20 +167712,8 @@ The tool uses a Euclidian 3D space (DipSpace) of the orthogonal descriptors of t
     sc:url "http://bioconductor.org/packages/release/bioc/html/Director.html" ;
     biotools:primaryContact "Katherine Icay" .
 
-<https://bio.tools/directors> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3421 ;
-    sc:citation <https://doi.org/10.1097/SAP.0000000000002074>,
-        "pubmed:31688121" ;
-    sc:description """Plastic Surgery Training and the Problematic Resident.
-
-INTRODUCTION:Plastic surgery resident education is a significant commitment by both programs and residents. Unfortunately, problematic resident behavior may occur and be difficult to manage. This study was designed to survey plastic surgery program directors to elucidate their experience with problematic resident behavior. METHODS:A electronic survey was prepared using the online platform, qualtrics. The survey was distributed by email to all plastic surgery program directors. Questions were designed to evaluate frequency of problematic behavior and methods to manage the behaviors. A reminder was sent 3 weeks after initial distribution. Responses were collected for an additional 3 weeks. Responses were pooled separately for integrated and independent program directors. RESULTS:Thirty-eight program directors responded including 10 independent and 28 integrated program directors.
-
-||| HOMEPAGE MISSING!""" ;
-    sc:name "directors" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31688121" .
-
 <https://bio.tools/dirichletmultinomial> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3174,
@@ -171334,23 +167733,8 @@ INTRODUCTION:Plastic surgery resident education is a significant commitment by b
     sc:url "http://bioconductor.org/packages/release/bioc/html/DirichletMultinomial.html" ;
     biotools:primaryContact "Martin Morgan" .
 
-<https://bio.tools/disaggregate_targets> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3068,
-        edam:topic_3305 ;
-    sc:citation <https://doi.org/10.1002/JIA2.25424>,
-        "pmcid:PMC6921083",
-        "pubmed:31854504" ;
-    sc:description """Pepfar 3.0's HIV testing policy in Côte d'Ivoire (2014 to 2018).
-
-PEPFAR Panorama Spotlight.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'data'""" ;
-    sc:featureList edam:operation_3454 ;
-    sc:name "disaggregate targets" ;
-    sc:url "https://data.pepfar.gov" .
-
 <https://bio.tools/disambiguate> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0102,
@@ -171368,7 +167752,7 @@ PEPFAR Panorama Spotlight.
     sc:url "https://github.com/AstraZeneca-NGS/disambiguate" .
 
 <https://bio.tools/disbalance> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3174,
@@ -171383,7 +167767,7 @@ PEPFAR Panorama Spotlight.
     biotools:primaryContact "Quan Zou" .
 
 <https://bio.tools/disc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_2229,
@@ -171402,7 +167786,7 @@ PEPFAR Panorama Spotlight.
     sc:url "https://github.com/xie-lab/DISC" .
 
 <https://bio.tools/discbio> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0769,
@@ -171421,7 +167805,7 @@ PEPFAR Panorama Spotlight.
     sc:url "https://github.com/ocbe-uio/DIscBIO" .
 
 <https://bio.tools/disco> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_1317 ;
     sc:citation <https://doi.org/10.1002/pro.620>,
@@ -171436,7 +167820,7 @@ PEPFAR Panorama Spotlight.
     sc:url "http://www.cs.duke.edu/donaldlab/software/DISCO/index.php" .
 
 <https://bio.tools/disco-crossdocking> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2275,
@@ -171452,37 +167836,8 @@ PEPFAR Panorama Spotlight.
     sc:name "Disco" ;
     sc:url "http://disco.csb.pitt.edu" .
 
-<https://bio.tools/disco_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0154,
-        edam:topic_2275,
-        edam:topic_3047,
-        edam:topic_3336 ;
-    sc:citation <https://doi.org/10.1002/PRO.3784>,
-        "pmcid:PMC6933848",
-        "pubmed:31721338" ;
-    sc:description """Cross-docking benchmark for automated pose and ranking prediction of ligand binding.
-
-Directory of Structures for Crossdocking.
-
-Welcome to the Cross Docking Benchmark server. This server has been created as a useful benchmark for crossdocking using the Targets listed in DUD-E as a reference. The completed benchmark contains:.
-
-To generate a benchmark for your desired targets, use our free on-line system below. To begin...
-
-4,399 ligand and receptor structures homologous to one of 95 targets, an average of 46 ligands per target.
-
-Submit the email address to which the results should be sent. This is done only for the purpose of validation and providing results. None of your information will be retained.
-
-||| NAME (disco) SIMILAR TO (PUB. DIFFERENT) bio.tools/disco_segmentation (DISCO), bio.tools/disco (DISCO).
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'cross-docking'""" ;
-    sc:featureList edam:operation_0482,
-        edam:operation_2489,
-        edam:operation_3899 ;
-    sc:name "disco_autogenerated" ;
-    sc:url "http://disco.csb.pitt.edu" .
-
 <https://bio.tools/disco_dsr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0821,
@@ -171503,7 +167858,7 @@ Submit the email address to which the results should be sent. This is done only
     sc:url "https://github.com/Genome-Evolution-and-Ecology-Group-GEEG/DiSCo" .
 
 <https://bio.tools/disco_segmentation> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2229,
@@ -171520,7 +167875,7 @@ Submit the email address to which the results should be sent. This is done only
     biotools:primaryContact "Matthew M Crane" .
 
 <https://bio.tools/discop> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0108,
@@ -171536,7 +167891,7 @@ Submit the email address to which the results should be sent. This is done only
     sc:url "http://biomine.cs.vcu.edu/servers/disCoP/" .
 
 <https://bio.tools/discordant> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3053,
@@ -171560,14 +167915,14 @@ Submit the email address to which the results should be sent. This is done only
 
 <https://bio.tools/discosnp> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2975" ;
-            sc:name "Nucleic acid sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_2975" ] ;
+            sc:additionalType "http://edamontology.org/data_2975" ;
+            sc:encodingFormat "http://edamontology.org/format_2182" ;
+            sc:name "Nucleic acid sequence (raw)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence variations" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_2885,
@@ -171588,14 +167943,14 @@ Submit the email address to which the results should be sent. This is done only
 
 <https://bio.tools/discotope> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0883" ;
-            sc:name "Structure" ;
-            sc:sameAs "http://edamontology.org/data_0883" ] ;
+            sc:additionalType "http://edamontology.org/data_0883" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Structure" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Protein features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_2830,
@@ -171614,7 +167969,7 @@ Submit the email address to which the results should be sent. This is done only
     biotools:primaryContact "Ole Lund" .
 
 <https://bio.tools/discount> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_3343,
         edam:topic_3382,
@@ -171631,7 +167986,7 @@ Submit the email address to which the results should be sent. This is done only
     sc:url "https://gitlab.com/lodewijk-track32/discount_paper" .
 
 <https://bio.tools/discount-kmer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Script" ;
     sc:applicationSubCategory edam:topic_0196,
@@ -171649,7 +168004,7 @@ Submit the email address to which the results should be sent. This is done only
     biotools:primaryContact "Johan Nyström-Persson" .
 
 <https://bio.tools/discovar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199 ;
     sc:citation <https://doi.org/10.1038/ng.3121> ;
@@ -171663,7 +168018,7 @@ Submit the email address to which the results should be sent. This is done only
     sc:url "http://www.broadinstitute.org/software/discovar/blog/" .
 
 <https://bio.tools/discovar_de_novo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196 ;
     sc:citation <https://doi.org/10.1038/ng.3121> ;
@@ -171677,7 +168032,7 @@ Submit the email address to which the results should be sent. This is done only
     sc:url "http://www.broadinstitute.org/software/discovar/blog/" .
 
 <https://bio.tools/discover> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btp230> ;
@@ -171688,7 +168043,7 @@ Submit the email address to which the results should be sent. This is done only
     sc:url "http://www.sailing.cs.cmu.edu/main/?page_id=387" .
 
 <https://bio.tools/discover-homologus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -171704,7 +168059,7 @@ Submit the email address to which the results should be sent. This is done only
     sc:url "https://github.com/Bhattacharya-Lab/DisCovER" .
 
 <https://bio.tools/discovering-shortest-path-between-points-cerebrovascular-system> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3421,
         edam:topic_3444,
@@ -171722,7 +168077,7 @@ Submit the email address to which the results should be sent. This is done only
     biotools:primaryContact "Vishwajeet Pattanaik" .
 
 <https://bio.tools/discovery_environment> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3293,
@@ -171741,7 +168096,7 @@ Submit the email address to which the results should be sent. This is done only
     biotools:primaryContact "Support" .
 
 <https://bio.tools/discoveryspace> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -171764,7 +168119,7 @@ Submit the email address to which the results should be sent. This is done only
     biotools:primaryContact "Neil Robertson" .
 
 <https://bio.tools/discrete_dmd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0176 ;
     sc:citation <https://doi.org/10.1021/acs.jctc.6b01153> ;
@@ -171775,7 +168130,7 @@ Submit the email address to which the results should be sent. This is done only
     biotools:primaryContact "Institute for Research in Biomedicine Barcelona" .
 
 <https://bio.tools/discretization_algorithms-cacc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -171791,7 +168146,7 @@ Submit the email address to which the results should be sent. This is done only
     biotools:primaryContact "Guangdi Li" .
 
 <https://bio.tools/discriminative_hmms> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0140,
         edam:topic_0160 ;
@@ -171803,7 +168158,7 @@ Submit the email address to which the results should be sent. This is done only
     sc:url "http://murphylab.cbi.cmu.edu/software/2009_TCBB_motif/" .
 
 <https://bio.tools/discromark> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0632,
@@ -171823,8 +168178,25 @@ Submit the email address to which the results should be sent. This is done only
     sc:url "https://github.com/hdetering/discomark" ;
     biotools:primaryContact "Sereina Rutschmann" .
 
+<https://bio.tools/discrover> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_3511 ;
+    sc:citation <https://doi.org/10.1093/nar/gku1083>,
+        "pmcid:PMC4245949",
+        "pubmed:25389269" ;
+    sc:description "Discover discriminative sequence motifs." ;
+    sc:featureList edam:operation_0415 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "discrover" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/maaskola/discrover" .
+
 <https://bio.tools/disease-detection-animals> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3344,
@@ -171842,7 +168214,7 @@ Submit the email address to which the results should be sent. This is done only
     biotools:primaryContact "muhammad bilal" .
 
 <https://bio.tools/disease-ontology> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0634,
@@ -171873,7 +168245,7 @@ Name Synonym Definition Subset DOID Alternate ID Xrefs DO_AGR_slim DO_cancer_sli
     sc:url "http://www.disease-ontology.org" .
 
 <https://bio.tools/disease_ontology> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0089,
@@ -171901,7 +168273,7 @@ Name Synonym Definition Subset DOID Alternate ID Xrefs DO_AGR_slim DO_cancer_sli
     biotools:primaryContact "Contact Form" .
 
 <https://bio.tools/diseasecard> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web API",
         "Web application" ;
@@ -171928,7 +168300,7 @@ Name Synonym Definition Subset DOID Alternate ID Xrefs DO_AGR_slim DO_cancer_sli
         "Pedro Lopes" .
 
 <https://bio.tools/diseaseconnect> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0634,
@@ -171954,43 +168326,53 @@ Name Synonym Definition Subset DOID Alternate ID Xrefs DO_AGR_slim DO_cancer_sli
         "Zhou Lab, University of Southern California" .
 
 <https://bio.tools/diseasemeth> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
-    sc:additionalType "Database portal" ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2769" ;
+            sc:name "Transcript ID" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1026" ;
+            sc:name "Gene symbol" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_0654,
         edam:topic_3295,
         edam:topic_3674 ;
-    sc:citation "pubmed:22135302" ;
-    sc:description "A web based resource focused on the aberrant methylomes of human diseases." ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAB1088>,
+        <https://doi.org/10.1093/nar/gkr1169>,
+        "pmcid:PMC3245164",
+        "pmcid:PMC8728278",
+        "pubmed:22135302",
+        "pubmed:34792145" ;
+    sc:description "The Human Disease Methylation Database Version 3.0 is a web-based resource that focuses on the abnormal methylome of human diseases." ;
     sc:featureList edam:operation_0308,
         edam:operation_3204,
         edam:operation_3206,
         edam:operation_3207 ;
+    sc:isAccessibleForFree true ;
     sc:name "DiseaseMeth" ;
     sc:operatingSystem "Linux",
         "Mac",
         "Windows" ;
-    sc:url "http://bioinfo.hrbmu.edu.cn/diseasemeth" ;
-    biotools:primaryContact "Lv Jie" .
+    sc:softwareVersion "3.0" ;
+    sc:url "http://218.8.241.243:8080/DiseaseMeth3.0/index.html" ;
+    biotools:primaryContact <https://orcid.org/0000-0002-5307-2484> .
 
 <https://bio.tools/diseases> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3667" ;
-            sc:name "Disease identifier" ;
-            sc:sameAs "http://edamontology.org/data_3667" ],
+            sc:additionalType "http://edamontology.org/data_1025" ;
+            sc:name "Gene identifier" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1025" ;
-            sc:name "Gene identifier" ;
-            sc:sameAs "http://edamontology.org/data_1025" ] ;
+            sc:additionalType "http://edamontology.org/data_3667" ;
+            sc:name "Disease identifier" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3667" ;
-            sc:name "Disease identifier" ;
-            sc:sameAs "http://edamontology.org/data_3667" ],
+            sc:additionalType "http://edamontology.org/data_3667" ;
+            sc:name "Disease identifier" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1025" ;
-            sc:name "Gene identifier" ;
-            sc:sameAs "http://edamontology.org/data_1025" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1025" ;
+            sc:name "Gene identifier" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0218,
         edam:topic_3517 ;
@@ -172008,7 +168390,7 @@ Name Synonym Definition Subset DOID Alternate ID Xrefs DO_AGR_slim DO_cancer_sli
     biotools:primaryContact "Lars Juhl Jensen" .
 
 <https://bio.tools/disembl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -172022,16 +168404,19 @@ Name Synonym Definition Subset DOID Alternate ID Xrefs DO_AGR_slim DO_cancer_sli
         edam:operation_1777,
         edam:operation_2423,
         edam:operation_3092 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
     sc:name "DisEMBL" ;
     sc:operatingSystem "Linux",
         "Mac",
         "Windows" ;
     sc:softwareHelp <http://dis.embl.de/html/help.html> ;
+    sc:softwareVersion "1.5" ;
     sc:url "http://dis.embl.de/" ;
     biotools:primaryContact "Dr Rune Linding" .
 
 <https://bio.tools/disembl_ws_jabaws> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btr304> ;
@@ -172046,8 +168431,31 @@ Name Synonym Definition Subset DOID Alternate ID Xrefs DO_AGR_slim DO_cancer_sli
     sc:softwareVersion "1" ;
     sc:url "http://www.compbio.dundee.ac.uk/jabaws/" .
 
+<https://bio.tools/disenrich> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0080,
+        edam:topic_0121,
+        edam:topic_0154,
+        edam:topic_3306,
+        edam:topic_3407 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC051>,
+        "pmcid:PMC8963327",
+        "pubmed:35094056" ;
+    sc:description "DisEnrich—the database of human proteome IDRs that are significantly enriched in particular amino acids." ;
+    sc:featureList edam:operation_2949,
+        edam:operation_3501,
+        edam:operation_3904 ;
+    sc:isAccessibleForFree true ;
+    sc:name "DisEnrich" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://prodata.swmed.edu/DisEnrichDB/" .
+
 <https://bio.tools/disentangler> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3053 ;
@@ -172065,22 +168473,20 @@ Name Synonym Definition Subset DOID Alternate ID Xrefs DO_AGR_slim DO_cancer_sli
 
 <https://bio.tools/disgenet> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3021" ;
-            sc:name "UniProt accession" ;
-            sc:sameAs "http://edamontology.org/data_3021" ],
+            sc:additionalType "http://edamontology.org/data_1106" ;
+            sc:name "dbSNP ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1027" ;
-            sc:name "Gene ID (NCBI)" ;
-            sc:sameAs "http://edamontology.org/data_1027" ],
+            sc:additionalType "http://edamontology.org/data_3021" ;
+            sc:name "UniProt accession" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1106" ;
-            sc:name "dbSNP ID" ;
-            sc:sameAs "http://edamontology.org/data_1106" ] ;
+            sc:additionalType "http://edamontology.org/data_1027" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Gene ID (NCBI)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2080" ;
-            sc:name "Database search results" ;
-            sc:sameAs "http://edamontology.org/data_2080" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2080" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Database search results" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Plug-in",
         "SPARQL endpoint",
@@ -172138,14 +168544,14 @@ The current version of DisGeNET (v7.0) contains 1,134,942 gene-disease associati
 
 <https://bio.tools/dislocate> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2974" ;
-            sc:name "Protein sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_2974" ] ;
+            sc:additionalType "http://edamontology.org/data_2974" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence (raw)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_3542 ;
@@ -172166,8 +168572,18 @@ The current version of DisGeNET (v7.0) contains 1,134,942 gene-disease associati
     sc:url "http://dislocate.biocomp.unibo.it/dislocate/default/index" ;
     biotools:primaryContact "Castrense Savojardo" .
 
+<https://bio.tools/dismed> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0605 ;
+    sc:citation <https://doi.org/10.1186/s13326-021-00236-2> ;
+    sc:description "DiSMed is a de-identification methodology for Spanish medical texts based on Named Entity Recognition (NER). It is based on spaCy and partially based on the networks designed by Gillaume Genthial implemented on Tensorflow 1. DiSMed includes both the Python code and the curated dataset, available under request under a research use agreement." ;
+    sc:isAccessibleForFree true ;
+    sc:name "DiSMed" ;
+    sc:url "https://github.com/BIMCV-CSUSP/DiSMed" .
+
 <https://bio.tools/dismiss> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Plug-in" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -172188,7 +168604,7 @@ The current version of DisGeNET (v7.0) contains 1,134,942 gene-disease associati
     biotools:primaryContact "Martin T. Swain" .
 
 <https://bio.tools/disnep> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -172205,7 +168621,7 @@ The current version of DisGeNET (v7.0) contains 1,134,942 gene-disease associati
     sc:url "https://github.com/pfruan/DiSNEP" .
 
 <https://bio.tools/disnet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0218,
@@ -172224,7 +168640,7 @@ The current version of DisGeNET (v7.0) contains 1,134,942 gene-disease associati
     sc:url "http://disnet.ctb.upm.es/" .
 
 <https://bio.tools/disofun> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0634,
@@ -172243,7 +168659,7 @@ Description :This page includes the codes of DisoFun which are implemented and t
     sc:url "http://mlda.swu.edu.cn/codes.php?name=DisoFun" .
 
 <https://bio.tools/disolippred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0121,
@@ -172264,24 +168680,47 @@ Description :This page includes the codes of DisoFun which are implemented and t
     sc:url "http://biomine.cs.vcu.edu/servers/DisoLipPred/" .
 
 <https://bio.tools/disomine> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0176,
         edam:topic_0736,
         edam:topic_3306,
         edam:topic_3474,
-        edam:topic_3538 ;
-    sc:citation <https://doi.org/10.1101/2020.05.25.115253> ;
-    sc:description "DisoMine is a tool that predicts protein disorder with recurrent neural networks not directly from the amino acid sequence, but instead from more generic predictions of key biophysical properties, here protein dynamics, secondary structure and early folding. The tool is fast and requires only a single sequence, making it applicable for large-scale screening, including poorly studied and orphan proteins. DisoMine compares well to 10 state of the art predictors, also if these use evolutionary information." ;
+        edam:topic_3538,
+        edam:topic_3542 ;
+    sc:citation <https://doi.org/10.1016/J.JMB.2022.167579>,
+        "pubmed:35469832" ;
+    sc:description "DisoMine is a tool that predicts protein disorder with recurrent neural networks not directly from the amino acid sequence, but instead from more generic predictions of key biophysical properties, here protein dynamics, secondary structure and early folding." ;
     sc:featureList edam:operation_0267,
         edam:operation_0303,
         edam:operation_2476,
         edam:operation_3904 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
     sc:name "DisoMine" ;
-    sc:url "http://bio2byte.com/disomine/" .
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://bio2byte.be/b2btools/documentation/disomine/> ;
+    sc:url "https://bio2byte.be/disomine/" .
+
+<https://bio.tools/disopred3> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Web application" ;
+    sc:citation <https://doi.org/10.1093/bioinformatics/btu744>,
+        "pmcid:PMC4380029",
+        "pubmed:25391399" ;
+    sc:description "DISOPRED3 represents the latest release of our successful machine-learning based approach to the detection of intrinsically disordered regions." ;
+    sc:isAccessibleForFree true ;
+    sc:license "Freeware" ;
+    sc:name "DISOPRED3" ;
+    sc:operatingSystem "Linux" ;
+    sc:softwareVersion "3.1" ;
+    sc:url "http://bioinf.cs.ucl.ac.uk/disopred" .
 
 <https://bio.tools/disordpbind> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0099,
@@ -172296,11 +168735,15 @@ Description :This page includes the codes of DisoFun which are implemented and t
         edam:operation_2492,
         edam:operation_3901,
         edam:operation_3904 ;
+    sc:isAccessibleForFree true ;
     sc:name "DisoRDPbind" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
     sc:url "http://biomine.cs.vcu.edu/servers/DisoRDPbind/" .
 
 <https://bio.tools/disp-r-cnn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_3382 ;
     sc:citation <https://doi.org/10.1109/TPAMI.2021.3076678>,
@@ -172311,8 +168754,32 @@ Description :This page includes the codes of DisoFun which are implemented and t
     sc:url "https://github.com/zju3dv/disprcnn" ;
     biotools:primaryContact "Xiaowei Zhou" .
 
+<https://bio.tools/disphasedb> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0593,
+        edam:topic_0601,
+        edam:topic_0634,
+        edam:topic_2229 ;
+    sc:citation <https://doi.org/10.1016/J.CSBJ.2022.05.004>,
+        "pmcid:PMC9156858",
+        "pubmed:35685370" ;
+    sc:description "An integrative database of diseases related variations in liquid-liquid phase separation proteins." ;
+    sc:featureList edam:operation_0417,
+        edam:operation_3227,
+        edam:operation_3454 ;
+    sc:isAccessibleForFree true ;
+    sc:license "CC-BY-4.0" ;
+    sc:name "DisPhaseDB" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareVersion "0.1.8" ;
+    sc:url "http://disphasedb.leloir.org.ar" .
+
 <https://bio.tools/disphred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0123,
         edam:topic_0154,
@@ -172330,8 +168797,30 @@ Description :This page includes the codes of DisoFun which are implemented and t
     sc:name "DispHred" ;
     sc:url "https://ppmclab.pythonanywhere.com/DispHred" .
 
+<https://bio.tools/disphscan> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0121,
+        edam:topic_0634,
+        edam:topic_3297,
+        edam:topic_3300,
+        edam:topic_3538 ;
+    sc:citation <https://doi.org/10.3390/BIOM11111596>,
+        "pmcid:PMC8616002",
+        "pubmed:34827596" ;
+    sc:description "DispHScan is a multi-sequence web tool for predicting protein disorder as a function of pH and spot folding transitions in large datasets." ;
+    sc:featureList edam:operation_0470,
+        edam:operation_1777,
+        edam:operation_3904 ;
+    sc:isAccessibleForFree true ;
+    sc:name "DispHScan" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://disphscan.ppmclab.com" .
+
 <https://bio.tools/displayfam> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0623 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/15.12.1020> ;
@@ -172342,28 +168831,48 @@ Description :This page includes the codes of DisoFun which are implemented and t
     sc:softwareVersion "1999" ;
     sc:url "http://multalin.toulouse.inra.fr/DisplayFam/" .
 
+<https://bio.tools/dispredict2> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:citation <https://doi.org/10.1371/journal.pone.0161452>,
+        "pmcid:PMC5010294",
+        "pubmed:27588752" ;
+    sc:description "DisPredict is a predictor of disorder residues in protein. It takes protein sequence (standard FASTA format) as input and outputs per residue binary annotation (disorder or order) along with two real values corresponding to probability of that residue being disorder and order." ;
+    sc:isAccessibleForFree true ;
+    sc:name "DisPredict2" ;
+    sc:operatingSystem "Linux" ;
+    sc:softwareVersion "2.0" ;
+    sc:url "https://cs.uno.edu/~tamjid/Software.html" .
+
+<https://bio.tools/dispredict3> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:description "Dispredict3.0 allows the prediction of intrinsically disordered proteins with protein language model." ;
+    sc:isAccessibleForFree true ;
+    sc:name "DisPredict3" ;
+    sc:operatingSystem "Linux" ;
+    sc:softwareHelp <https://cs.uno.edu/~tamjid/TechReport/Dispredict3.0_TR2022_1.pdf> ;
+    sc:url "https://cs.uno.edu/~tamjid/Software.html" .
+
 <https://bio.tools/disprot> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1009" ;
-            sc:name "Protein name" ;
-            sc:sameAs "http://edamontology.org/data_1009" ],
+            sc:additionalType "http://edamontology.org/data_3021" ;
+            sc:name "UniProt accession" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2723" ;
-            sc:name "Protein ID (DisProt)" ;
-            sc:sameAs "http://edamontology.org/data_2723" ],
+            sc:additionalType "http://edamontology.org/data_2723" ;
+            sc:name "Protein ID (DisProt)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3021" ;
-            sc:name "UniProt accession" ;
-            sc:sameAs "http://edamontology.org/data_3021" ] ;
+            sc:additionalType "http://edamontology.org/data_1009" ;
+            sc:name "Protein name" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1537" ;
-            sc:name "Protein structure report" ;
-            sc:sameAs "http://edamontology.org/data_1537" ],
+            sc:additionalType "http://edamontology.org/data_1537" ;
+            sc:encodingFormat "http://edamontology.org/format_3464" ;
+            sc:name "Protein structure report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:encodingFormat "http://edamontology.org/format_3464" ;
+            sc:name "Protein features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web API",
         "Web application" ;
@@ -172386,7 +168895,7 @@ Description :This page includes the codes of DisoFun which are implemented and t
     biotools:primaryContact <https://orcid.org/0000-0003-4525-7793> .
 
 <https://bio.tools/disqover> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web API",
         "Web application" ;
@@ -172415,7 +168924,7 @@ Description :This page includes the codes of DisoFun which are implemented and t
     sc:url "http://www.disqover.com" .
 
 <https://bio.tools/dissco> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3055,
         edam:topic_3056 ;
@@ -172429,7 +168938,7 @@ Description :This page includes the codes of DisoFun which are implemented and t
     sc:url "https://yunliweb.its.unc.edu/DISSCO" .
 
 <https://bio.tools/dissect> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3175,
         edam:topic_3308 ;
@@ -172445,7 +168954,7 @@ Description :This page includes the codes of DisoFun which are implemented and t
     sc:url "http://dissect-trans.sourceforge.net/Home" .
 
 <https://bio.tools/distanced> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0632,
         edam:topic_3512,
         edam:topic_3697 ;
@@ -172460,14 +168969,14 @@ Description :This page includes the codes of DisoFun which are implemented and t
 
 <https://bio.tools/distancep> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1537" ;
-            sc:name "Protein structure report" ;
-            sc:sameAs "http://edamontology.org/data_1537" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1537" ;
+            sc:encodingFormat "http://edamontology.org/format_2333" ;
+            sc:name "Protein structure report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0082 ;
@@ -172485,8 +168994,47 @@ Description :This page includes the codes of DisoFun which are implemented and t
     sc:url "http://cbs.dtu.dk/services/DistanceP" ;
     biotools:primaryContact "Ole Lund" .
 
+<https://bio.tools/distangsd> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Desktop application" ;
+    sc:applicationSubCategory edam:topic_0084,
+        edam:topic_0199,
+        edam:topic_0625,
+        edam:topic_3168 ;
+    sc:citation <https://doi.org/10.1093/MOLBEV/MSAC119>,
+        "pmcid:PMC9234764",
+        "pubmed:35647675" ;
+    sc:description "distAngsd is a software to simulate and infer phylogenetic relationships between two individuals, in which two novel methods (i.e., geno and nuc) are proposed." ;
+    sc:featureList edam:operation_0323,
+        edam:operation_2238,
+        edam:operation_3196 ;
+    sc:license "GPL-1.0" ;
+    sc:name "distAngsd" ;
+    sc:url "https://github.com/lz398/distAngsd" .
+
+<https://bio.tools/distema> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Desktop application" ;
+    sc:applicationSubCategory edam:topic_0082,
+        edam:topic_2814,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1186/S12859-022-04683-1>,
+        "pmcid:PMC9019949",
+        "pubmed:35439931" ;
+    sc:description "Prediction of the quality of single protein model using deep learning and residue-residue distance maps" ;
+    sc:featureList edam:operation_0477,
+        edam:operation_3092,
+        edam:operation_3927 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "DISTEMA" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/jianlin-cheng/DISTEMA" .
+
 <https://bio.tools/disteval> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -172504,7 +169052,7 @@ Description :This page includes the codes of DisoFun which are implemented and t
     sc:url "http://deep.cs.umsl.edu/disteval/" .
 
 <https://bio.tools/distild> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0634,
@@ -172528,22 +169076,18 @@ Description :This page includes the codes of DisoFun which are implemented and t
 
 <https://bio.tools/distiller> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3110" ;
-            sc:name "Raw microarray data" ;
-            sc:sameAs "http://edamontology.org/data_3110" ],
+            sc:additionalType "http://edamontology.org/data_3110" ;
+            sc:name "Raw microarray data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2070" ;
-            sc:name "Sequence motif (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_2070" ] ;
+            sc:additionalType "http://edamontology.org/data_2070" ;
+            sc:name "Sequence motif (nucleic acid)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ],
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:name "Image" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Gene expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:name "Gene expression data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_3308 ;
@@ -172560,7 +169104,7 @@ Description :This page includes the codes of DisoFun which are implemented and t
     sc:url "http://bioinformatics.intec.ugent.be/kmarchal/Supplementary_Information_Lemmens_2008/Index.html" .
 
 <https://bio.tools/distinct> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0621,
@@ -172575,7 +169119,7 @@ Description :This page includes the codes of DisoFun which are implemented and t
     sc:url "https://github.com/SimoneTiberi/distinct" .
 
 <https://bio.tools/distmap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0102,
@@ -172595,14 +169139,12 @@ Description :This page includes the codes of DisoFun which are implemented and t
 
 <https://bio.tools/distmat> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:name "Sequence alignment" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0870" ;
-            sc:name "Sequence distance matrix" ;
-            sc:sameAs "http://edamontology.org/data_0870" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0870" ;
+            sc:name "Sequence distance matrix" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -172632,7 +169174,7 @@ Description :This page includes the codes of DisoFun which are implemented and t
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/distmat.html" .
 
 <https://bio.tools/distnet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3303,
@@ -172654,7 +169196,7 @@ Description :This page includes the codes of DisoFun which are implemented and t
     biotools:primaryContact "Simon Anders" .
 
 <https://bio.tools/disulfind> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -172679,7 +169221,7 @@ Description :This page includes the codes of DisoFun which are implemented and t
     biotools:primaryContact "DISULFIND Support" .
 
 <https://bio.tools/disvis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_1317 ;
     sc:author "Bonvin Lab" ;
@@ -172719,7 +169261,7 @@ Description :This page includes the codes of DisoFun which are implemented and t
     sc:url "http://milou.science.uu.nl/services/DISVIS" .
 
 <https://bio.tools/ditasic> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0637,
@@ -172735,7 +169277,7 @@ Description :This page includes the codes of DisoFun which are implemented and t
     biotools:primaryContact "Bernhard Y. Renard" .
 
 <https://bio.tools/dither> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0625,
@@ -172753,7 +169295,7 @@ Description :This page includes the codes of DisoFun which are implemented and t
     sc:url "https://github.com/XS-Wang-Lab/DITHER" .
 
 <https://bio.tools/diting> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0769,
@@ -172776,7 +169318,7 @@ Description :This page includes the codes of DisoFun which are implemented and t
     sc:url "https://github.com/xuechunxu/DiTing" .
 
 <https://bio.tools/dittoseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_3170,
@@ -172793,7 +169335,7 @@ Description :This page includes the codes of DisoFun which are implemented and t
     sc:url "https://bioconductor.org/packages/dittoSeq/" .
 
 <https://bio.tools/diurnal-tools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Bioinformatics portal" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -172808,7 +169350,7 @@ Description :This page includes the codes of DisoFun which are implemented and t
     sc:url "http://Diurnal.plant.tools" .
 
 <https://bio.tools/diva> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_3318,
         edam:topic_3382 ;
@@ -172823,7 +169365,7 @@ Description :This page includes the codes of DisoFun which are implemented and t
     sc:url "https://diva.pasteur.fr" .
 
 <https://bio.tools/divbiclust> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3170,
@@ -172837,8 +169379,71 @@ Description :This page includes the codes of DisoFun which are implemented and t
     sc:name "DivBiclust" ;
     sc:url "https://www.github.com/Qiong-Fang/DivBiclust" .
 
+<https://bio.tools/divbrowse> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence variations" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:encodingFormat "http://edamontology.org/format_1975" ;
+            sc:name "Sequence features" ] ;
+    bsc:output [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence variations" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:encodingFormat "http://edamontology.org/format_1975" ;
+            sc:name "Sequence features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Plug-in",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0091,
+        edam:topic_0092,
+        edam:topic_0199,
+        edam:topic_0622,
+        edam:topic_3056 ;
+    sc:author <https://orcid.org/0000-0002-8948-6793> ;
+    sc:description "DivBrowse is a web application for interactive visualization and exploratory analysis of genomic diversity data stored in Variant Call Format (VCF) files of any size. By seamlessly combining BLAST as an entry point together with interactive data analysis features such as principal component analysis in one graphical user interface, DivBrowse provides a novel and unique set of exploratory data analysis capabilities for genomic biodiversity datasets. The capability to integrate DivBrowse into existing web applications supports interoperability between different web applications. Built-in interactive computation of principal component analysis allows users to perform ad-hoc analysis of the population structure based on specific genetic elements such as genes and exons. Data interoperability is supported by the ability to export genomic diversity data in VCF and General Feature Format (GFF3) files." ;
+    sc:featureList edam:operation_0361,
+        edam:operation_2939 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "DivBrowse" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:provider <https://orcid.org/0000-0001-6113-3518> ;
+    sc:softwareHelp <https://divbrowse.readthedocs.io/> ;
+    sc:softwareVersion "1.0.0" ;
+    sc:url "https://divbrowse.ipk-gatersleben.de" ;
+    biotools:primaryContact <https://orcid.org/0000-0001-6113-3518>,
+        <https://orcid.org/0000-0002-8948-6793> .
+
+<https://bio.tools/divil> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_2259,
+        edam:topic_3299,
+        edam:topic_3382 ;
+    sc:citation <https://doi.org/10.1371/JOURNAL.PONE.0265735>,
+        "pmcid:PMC8936491",
+        "pubmed:35312734" ;
+    sc:description "DiVil is a javascript based tool that produces interactive graphs" ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3435,
+        edam:operation_3927 ;
+    sc:license "Apache-2.0" ;
+    sc:name "DiVil" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://divil.bio.informatik.uni-rostock.de" .
+
 <https://bio.tools/divis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0622,
@@ -172865,7 +169470,7 @@ DIVIS, an easy-to-use, extensible, and customisable cancer genome sequencing ana
     sc:url "https://github.com/niu-lab/DIVIS" .
 
 <https://bio.tools/diyabc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0769,
@@ -172888,8 +169493,30 @@ DIVIS, an easy-to-use, extensible, and customisable cancer genome sequencing ana
     sc:url "https://diyabc.github.io" ;
     biotools:primaryContact <https://orcid.org/0000-0002-4357-6144> .
 
+<https://bio.tools/dizyme> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Bioinformatics portal",
+        "Database portal" ;
+    sc:applicationSubCategory edam:topic_0821,
+        edam:topic_3068,
+        edam:topic_3314,
+        edam:topic_3474,
+        edam:topic_3510 ;
+    sc:citation <https://doi.org/10.1002/SMLL.202105673>,
+        "pubmed:35032097" ;
+    sc:description "DiZyme open access resource for quantitative prediction of nanozyme catalytic activity" ;
+    sc:featureList edam:operation_2575,
+        edam:operation_3659,
+        edam:operation_3799 ;
+    sc:isAccessibleForFree true ;
+    sc:name "DiZyme" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://dizyme.net" .
+
 <https://bio.tools/djmol> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_2275,
         edam:topic_3314,
@@ -172907,7 +169534,7 @@ DIVIS, an easy-to-use, extensible, and customisable cancer genome sequencing ana
     sc:url "https://djmolprogram.github.io" .
 
 <https://bio.tools/dks> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3474 ;
@@ -172925,7 +169552,7 @@ DIVIS, an easy-to-use, extensible, and customisable cancer genome sequencing ana
     biotools:primaryContact "Jeffrey T. Leek" .
 
 <https://bio.tools/dkt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3360,
@@ -172941,8 +169568,49 @@ DIVIS, an easy-to-use, extensible, and customisable cancer genome sequencing ana
     sc:name "DKT" ;
     sc:url "https://github.com/mrazvan22/dkt" .
 
+<https://bio.tools/dl-m6a> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0621,
+        edam:topic_3170,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1109/TCBB.2022.3192572>,
+        "pubmed:35857733" ;
+    sc:description "DL-m6A: Identification of N6-methyladenosine Sites in Mammals using deep learning based on different encoding schemes" ;
+    sc:featureList edam:operation_3937 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Other" ;
+    sc:name "DL-m6A" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://nsclbio.jbnu.ac.kr/tools/DL-m6A/" .
+
+<https://bio.tools/dl-ml-hybrid> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Desktop application" ;
+    sc:applicationSubCategory edam:topic_0654,
+        edam:topic_3295,
+        edam:topic_3390,
+        edam:topic_3474,
+        edam:topic_3674 ;
+    sc:citation <https://doi.org/10.1186/S12859-021-04491-Z>,
+        "pmcid:PMC8630850",
+        "pubmed:34847877" ;
+    sc:description "A hybrid DL-ML approach that uses a deep neural network for extracting features and a non-DL classifier for classification tasks." ;
+    sc:featureList edam:operation_0417,
+        edam:operation_3809,
+        edam:operation_3937 ;
+    sc:isAccessibleForFree true ;
+    sc:name "DL-ML-Hybrid" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://github.com/skinnerlab/DL-ML-Hybrid" .
+
 <https://bio.tools/dl4papers> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3068,
@@ -172959,7 +169627,7 @@ DIVIS, an easy-to-use, extensible, and customisable cancer genome sequencing ana
     sc:url "http://sinc.unl.edu.ar/web-demo/dl4papers/" .
 
 <https://bio.tools/dlab> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_2275,
         edam:topic_2830,
@@ -172979,7 +169647,7 @@ DIVIS, an easy-to-use, extensible, and customisable cancer genome sequencing ana
     sc:url "https://github.com/oxpig/dlab-public" .
 
 <https://bio.tools/dlae> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3384,
@@ -173002,7 +169670,7 @@ DIVIS, an easy-to-use, extensible, and customisable cancer genome sequencing ana
     sc:url "https://github.com/jeremiahws/dlae" .
 
 <https://bio.tools/dlagm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3474 ;
     sc:citation <https://doi.org/10.1371/JOURNAL.PONE.0228812>,
@@ -173016,7 +169684,7 @@ DIVIS, an easy-to-use, extensible, and customisable cancer genome sequencing ana
     sc:url "https://cran.r-project.org/package=dLagM" .
 
 <https://bio.tools/dlbepitope> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2830,
@@ -173032,7 +169700,7 @@ DIVIS, an easy-to-use, extensible, and customisable cancer genome sequencing ana
     sc:url "http://ccb1.bmi.ac.cn:81/dlbepitope/" .
 
 <https://bio.tools/dleamse> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
         edam:topic_3520,
@@ -173047,8 +169715,43 @@ DIVIS, an easy-to-use, extensible, and customisable cancer genome sequencing ana
     sc:name "DLEAMSE" ;
     sc:url "https://github.com/bigbio/DLEAMSE/" .
 
+<https://bio.tools/dleb> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0602,
+        edam:topic_2269,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAC369>,
+        "pmcid:PMC9252827",
+        "pubmed:35552439" ;
+    sc:description "A web application for building deep learning models in biological research." ;
+    sc:featureList edam:operation_3927,
+        edam:operation_3937 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "DLEB" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://dleb.konkuk.ac.kr/" .
+
+<https://bio.tools/dlf-sul> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0601,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1093/BIB/BBAC323>,
+        "pubmed:35945138" ;
+    sc:description "A multi-module deep learning framework for prediction of S-sulfinylation sites in proteins." ;
+    sc:featureList edam:operation_0417,
+        edam:operation_3937 ;
+    sc:license "Not licensed" ;
+    sc:name "DLF-Sul" ;
+    sc:url "https://github.com/ningq669/DLF-Sul" .
+
 <https://bio.tools/dlff-acp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3318,
         edam:topic_3474 ;
@@ -173064,7 +169767,7 @@ DIVIS, an easy-to-use, extensible, and customisable cancer genome sequencing ana
     sc:url "https://github.com/wame-ng/DLFF-ACP" .
 
 <https://bio.tools/dlocalmotif> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/bts654> ;
@@ -173078,7 +169781,7 @@ DIVIS, an easy-to-use, extensible, and customisable cancer genome sequencing ana
     sc:url "http://bioinf.scmb.uq.edu.au/dlocalmotif/" .
 
 <https://bio.tools/dlpalign> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0081,
@@ -173094,7 +169797,7 @@ DIVIS, an easy-to-use, extensible, and customisable cancer genome sequencing ana
     sc:url "https://github.com/kuangmeng/DLPAlign" .
 
 <https://bio.tools/dlptcr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Web application",
         "Workbench" ;
@@ -173118,8 +169821,21 @@ DIVIS, an easy-to-use, extensible, and customisable cancer genome sequencing ana
         "Windows" ;
     sc:url "http://jianglab.org.cn/DLpTCR/" .
 
+<https://bio.tools/dltta> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_3384,
+        edam:topic_3444,
+        edam:topic_3452 ;
+    sc:citation <https://doi.org/10.1109/TMI.2022.3191535>,
+        "pubmed:35839185" ;
+    sc:description "Dynamic Learning Rate for Test-time Adaptation on Cross-domain Medical Images." ;
+    sc:license "Not licensed" ;
+    sc:name "DLTTA" ;
+    sc:url "https://github.com/med-air/DLTTA" .
+
 <https://bio.tools/dm3-import-gatan-digital-micrograph> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0593,
         edam:topic_0611,
@@ -173136,7 +169852,7 @@ DIVIS, an easy-to-use, extensible, and customisable cancer genome sequencing ana
     biotools:primaryContact "Robert McLeod" .
 
 <https://bio.tools/dm3loc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0749,
         edam:topic_3512 ;
@@ -173151,7 +169867,7 @@ DIVIS, an easy-to-use, extensible, and customisable cancer genome sequencing ana
     sc:url "http://dm3loc.lin-group.cn" .
 
 <https://bio.tools/dmatch> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0102,
@@ -173168,7 +169884,7 @@ DIVIS, an easy-to-use, extensible, and customisable cancer genome sequencing ana
     sc:url "https://qzhan321.github.io/dmatch/" .
 
 <https://bio.tools/dmchmm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3168 ;
@@ -173185,7 +169901,7 @@ DIVIS, an easy-to-use, extensible, and customisable cancer genome sequencing ana
     biotools:primaryContact "Farhad Shokoohi" .
 
 <https://bio.tools/dmdscheme> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Ontology" ;
     sc:applicationSubCategory edam:topic_0610 ;
@@ -173197,7 +169913,7 @@ DIVIS, an easy-to-use, extensible, and customisable cancer genome sequencing ana
     sc:url "https://CRAN.R-project.org/package=dmdScheme" .
 
 <https://bio.tools/dmdtoolkit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0199,
@@ -173218,7 +169934,7 @@ DIVIS, an easy-to-use, extensible, and customisable cancer genome sequencing ana
     biotools:primaryContact "Shiwen Wu" .
 
 <https://bio.tools/dmeas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3295 ;
@@ -173234,7 +169950,7 @@ DIVIS, an easy-to-use, extensible, and customisable cancer genome sequencing ana
     sc:url "http://sourceforge.net/projects/dmeas" .
 
 <https://bio.tools/dmf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654 ;
     sc:description "DMF (Dragon Motif Finder) is a simple ab-initio motif finding tool that allows the processing of relatively large sequence sets in a relatively short amount of time on the web." ;
@@ -173245,7 +169961,7 @@ DIVIS, an easy-to-use, extensible, and customisable cancer genome sequencing ana
     sc:url "http://www.cbrc.kaust.edu.sa/dmf/" .
 
 <https://bio.tools/dmil-isofun> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -173263,7 +169979,7 @@ DIVIS, an easy-to-use, extensible, and customisable cancer genome sequencing ana
     sc:url "http://www.sdu-idea.cn/codes.php?name=DMIL-Isofun" .
 
 <https://bio.tools/dminda> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0160,
@@ -173288,8 +170004,21 @@ DIVIS, an easy-to-use, extensible, and customisable cancer genome sequencing ana
     sc:url "http://csbl.bmb.uga.edu/DMINDA/" ;
     biotools:primaryContact "Contact Form" .
 
+<https://bio.tools/dmkpred> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:description "DMKPred is a SVM based webserver for the prediction of binding of chemical molecules with specific kinases. Here user can paste or upload the molecular descriptors off chemical molecules and our prediction method calculate the binding of these chemical with protein kinases." ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "dmkpred" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/dmkpred/index.html> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/dmkpred/index.html" .
+
 <https://bio.tools/dmlda-loclift> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0140,
@@ -173305,8 +170034,56 @@ DIVIS, an easy-to-use, extensible, and customisable cancer genome sequencing ana
     sc:name "DMLDA-LocLIFT" ;
     sc:url "https://github.com/QUST-AIBBDRC/DMLDA-LocLIFT/" .
 
+<https://bio.tools/dmnet> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application",
+        "Workbench",
+        "Workflow" ;
+    sc:applicationSubCategory edam:topic_2229,
+        edam:topic_3303,
+        edam:topic_3382 ;
+    sc:citation <https://doi.org/10.1109/ICCVW54120.2021.00375>,
+        "pmcid:PMC8982054",
+        "pubmed:35386855" ;
+    sc:description "A dual-stream marker-guided network (DMNet) for segmentation of touching cells in microscopy videos of many cell types." ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "DMNet" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://celltrackingchallenge.net/participants/MU-Ba-US/" .
+
+<https://bio.tools/dmpnet> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_3382,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.7717/PEERJ-CS.902>,
+        "pmcid:PMC9044264",
+        "pubmed:35494810" ;
+    sc:description "Densely Connected Multi-scale Pyramid Network (DMPNet) for count estimation and the generation of high-quality density maps." ;
+    sc:featureList edam:operation_3937 ;
+    sc:license "Not licensed" ;
+    sc:name "DMPNet" ;
+    sc:url "https://github.com/lpfworld/DMPNet" .
+
+<https://bio.tools/dmppred> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:description "Dmppred: Prediction of T1DM associated peptides" ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "dmppred" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/dmppred/index.php> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/dmppred/index.php" .
+
 <https://bio.tools/dmpy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2259,
@@ -173324,18 +170101,18 @@ DIVIS, an easy-to-use, extensible, and customisable cancer genome sequencing ana
 
 <https://bio.tools/dmrcaller> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1276" ;
-            sc:name "Nucleic acid features" ;
-            sc:sameAs "http://edamontology.org/data_1276" ] ;
+            sc:additionalType "http://edamontology.org/data_1276" ;
+            sc:encodingFormat "http://edamontology.org/format_1920" ;
+            sc:name "Nucleic acid features" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1017" ;
-            sc:name "Sequence range" ;
-            sc:sameAs "http://edamontology.org/data_1017" ],
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_2078" ;
+            sc:name "Plot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1017" ;
+            sc:encodingFormat "http://edamontology.org/format_2078" ;
+            sc:name "Sequence range" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0160,
@@ -173354,7 +170131,7 @@ DIVIS, an easy-to-use, extensible, and customisable cancer genome sequencing ana
     biotools:primaryContact "Nicolae Radu Zabet" .
 
 <https://bio.tools/dmrcate> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0654,
@@ -173374,7 +170151,7 @@ DIVIS, an easy-to-use, extensible, and customisable cancer genome sequencing ana
     biotools:primaryContact "Tim Peters" .
 
 <https://bio.tools/dmrfinder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3295,
@@ -173394,18 +170171,18 @@ DIVIS, an easy-to-use, extensible, and customisable cancer genome sequencing ana
 
 <https://bio.tools/dmrforpairs> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1276" ;
-            sc:name "Nucleic acid features" ;
-            sc:sameAs "http://edamontology.org/data_1276" ] ;
+            sc:additionalType "http://edamontology.org/data_1276" ;
+            sc:encodingFormat "http://edamontology.org/format_1920" ;
+            sc:name "Nucleic acid features" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ],
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:encodingFormat "http://edamontology.org/format_3603" ;
+            sc:name "Sequence features" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3603" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0160,
@@ -173428,7 +170205,7 @@ DIVIS, an easy-to-use, extensible, and customisable cancer genome sequencing ana
     biotools:primaryContact <http://orcid.org/0000-0002-2528-8077> .
 
 <https://bio.tools/dmrscan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3168,
         edam:topic_3673 ;
@@ -173445,7 +170222,7 @@ DIVIS, an easy-to-use, extensible, and customisable cancer genome sequencing ana
     biotools:primaryContact "Christian M Page" .
 
 <https://bio.tools/dmrseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0085,
         edam:topic_3168,
@@ -173468,7 +170245,7 @@ DIVIS, an easy-to-use, extensible, and customisable cancer genome sequencing ana
     biotools:primaryContact "Keegan Korthauer" .
 
 <https://bio.tools/dms-view> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0199,
@@ -173482,7 +170259,7 @@ DIVIS, an easy-to-use, extensible, and customisable cancer genome sequencing ana
     sc:url "https://dms-view.github.io/" .
 
 <https://bio.tools/dms_tools2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0199 ;
     sc:citation <https://doi.org/10.1186/s12859-015-0590-4> ;
@@ -173496,7 +170273,7 @@ DIVIS, an easy-to-use, extensible, and customisable cancer genome sequencing ana
     biotools:primaryContact <https://orcid.org/0000-0003-1267-3408> .
 
 <https://bio.tools/dmu> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3056,
         edam:topic_3517 ;
@@ -173512,7 +170289,7 @@ DIVIS, an easy-to-use, extensible, and customisable cancer genome sequencing ana
     sc:url "http://dmu.agrsci.dk/" .
 
 <https://bio.tools/dmvfl-rsa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Workbench" ;
     sc:applicationSubCategory edam:topic_0078,
@@ -173530,7 +170307,7 @@ DIVIS, an easy-to-use, extensible, and customisable cancer genome sequencing ana
     sc:url "https://jun-csbio.github.io/DMVFL-RSA/" .
 
 <https://bio.tools/dn3> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3304,
         edam:topic_3382,
@@ -173546,7 +170323,7 @@ DIVIS, an easy-to-use, extensible, and customisable cancer genome sequencing ana
     sc:url "https://github.com/SPOClab-ca/dn3" .
 
 <https://bio.tools/dnAQET> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3316,
         edam:topic_3673 ;
@@ -173563,7 +170340,7 @@ DIVIS, an easy-to-use, extensible, and customisable cancer genome sequencing ana
     sc:url "https://www.fda.gov/science-research/bioinformatics-tools/de-novo-assembly-quality-evaluation-tool-dnaqet" .
 
 <https://bio.tools/dna-bar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0632,
@@ -173577,7 +170354,7 @@ DIVIS, an easy-to-use, extensible, and customisable cancer genome sequencing ana
     sc:url "http://dna.engr.uconn.edu/?page_id=23" .
 
 <https://bio.tools/dna-encoding-chaos-game-representation> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3293,
@@ -173597,7 +170374,7 @@ DIVIS, an easy-to-use, extensible, and customisable cancer genome sequencing ana
     biotools:primaryContact "Tung Hoang" .
 
 <https://bio.tools/dna-features-viewer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0749,
@@ -173613,7 +170390,7 @@ DIVIS, an easy-to-use, extensible, and customisable cancer genome sequencing ana
     sc:url "https://github.com/Edinburgh-Genome-Foundry/DnaFeaturesViewer" .
 
 <https://bio.tools/dna-microarray-image-processing> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3344,
@@ -173631,7 +170408,7 @@ DIVIS, an easy-to-use, extensible, and customisable cancer genome sequencing ana
     biotools:primaryContact "Robert Bemis" .
 
 <https://bio.tools/dna-reed-solomon> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0632,
         edam:topic_0654,
@@ -173649,7 +170426,7 @@ For the inner code we decide on a symbol size mi of 6 bit, for the outer code th
     sc:url "https://github.com/reinhardh/dna_rs_coding" .
 
 <https://bio.tools/dna-scanner> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0632,
@@ -173664,7 +170441,7 @@ For the inner code we decide on a symbol size mi of 6 bit, for the outer code th
     sc:url "https://github.com/Global-Biofoundries-Alliance/DNA-scanner" .
 
 <https://bio.tools/dna4mc-lip> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3295,
@@ -173679,7 +170456,7 @@ For the inner code we decide on a symbol size mi of 6 bit, for the outer code th
     sc:url "http://i.uestc.edu.cn/DNA4mC-LIP/" .
 
 <https://bio.tools/dna6ma-mint> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0780,
         edam:topic_3295,
@@ -173696,7 +170473,7 @@ For the inner code we decide on a symbol size mi of 6 bit, for the outer code th
     sc:url "http://home.jbnu.ac.kr/NSCL/DNA6mA-MINT.htm" .
 
 <https://bio.tools/dna_baser> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3175 ;
     sc:description "Tool for manual and automatic sequence assembly, analysis, editing, sample processing, metadata integration, file format conversion and mutation detection." ;
@@ -173709,7 +170486,7 @@ For the inner code we decide on a symbol size mi of 6 bit, for the outer code th
     biotools:primaryContact "DnaBaser Support" .
 
 <https://bio.tools/dna_chromatogram_explorer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:description "Windows Explorer clone dedicated to DNA sequence analysis and manipulation." ;
@@ -173721,7 +170498,7 @@ For the inner code we decide on a symbol size mi of 6 bit, for the outer code th
     biotools:primaryContact "DNA Chromatogram explorer support" .
 
 <https://bio.tools/dna_for_windows> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0654,
@@ -173737,7 +170514,7 @@ For the inner code we decide on a symbol size mi of 6 bit, for the outer code th
     sc:url "http://www.dna-software.co.uk/" .
 
 <https://bio.tools/dnaa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3175,
         edam:topic_3295 ;
@@ -173755,7 +170532,7 @@ For the inner code we decide on a symbol size mi of 6 bit, for the outer code th
     biotools:primaryContact "Nils Homer" .
 
 <https://bio.tools/dnaasm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2885,
         edam:topic_3168 ;
@@ -173770,7 +170547,7 @@ For the inner code we decide on a symbol size mi of 6 bit, for the outer code th
     biotools:primaryContact "Wiktor Kuśmirek" .
 
 <https://bio.tools/dnaasm-link> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3382,
@@ -173792,7 +170569,7 @@ For the inner code we decide on a symbol size mi of 6 bit, for the outer code th
     sc:url "http://dnaasm.sourceforge.net" .
 
 <https://bio.tools/dnabarcodes> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3168 ;
@@ -173812,7 +170589,7 @@ For the inner code we decide on a symbol size mi of 6 bit, for the outer code th
     biotools:primaryContact "Tilo Buschmann" .
 
 <https://bio.tools/dnabert> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0749,
@@ -173832,8 +170609,24 @@ For the inner code we decide on a symbol size mi of 6 bit, for the outer code th
     sc:name "DNABERT" ;
     sc:url "https://github.com/jerryji1993/DNABERT" .
 
+<https://bio.tools/dnabinder> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:citation <https://doi.org/10.1186/1471-2105-8-463>,
+        "pmcid:PMC2216048",
+        "pubmed:18042272" ;
+    sc:description "DNAbinder is a webserver developed for predicting DNA-binding proteins from their amino acid sequence using various compositional features of proteins. The SVM models have been developed on following datasets using following protein features." ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "dnabinder" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/dnabinder/developers.html> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/dnabinder/developers.html" .
+
 <https://bio.tools/dnabindprot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0654,
@@ -173850,7 +170643,7 @@ For the inner code we decide on a symbol size mi of 6 bit, for the outer code th
     biotools:primaryContact "DNABINDPROT Support" .
 
 <https://bio.tools/dnaclust> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654 ;
@@ -173864,7 +170657,7 @@ For the inner code we decide on a symbol size mi of 6 bit, for the outer code th
     sc:url "http://dnaclust.sourceforge.net/" .
 
 <https://bio.tools/dnacopy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0080 ;
@@ -173881,8 +170674,50 @@ For the inner code we decide on a symbol size mi of 6 bit, for the outer code th
     sc:url "http://bioconductor.org/packages/release/bioc/html/DNAcopy.html" ;
     biotools:primaryContact "Venkatraman E. Seshan" .
 
+<https://bio.tools/dnacycp> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_0621,
+        edam:topic_0749,
+        edam:topic_3169,
+        edam:topic_3176 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAC162>,
+        "pmcid:PMC8989542",
+        "pubmed:35288750" ;
+    sc:description "A deep learning tool for DNA cyclizability prediction." ;
+    sc:featureList edam:operation_0432,
+        edam:operation_0445,
+        edam:operation_3795 ;
+    sc:isAccessibleForFree true ;
+    sc:name "DNAcycP" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://DNAcycP.stats.northwestern.edu" .
+
+<https://bio.tools/dnaffinity> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0621,
+        edam:topic_0749,
+        edam:topic_3169,
+        edam:topic_3295,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAC708>,
+        "pmcid:PMC9458447",
+        "pubmed:36018808" ;
+    sc:description "A machine-learning approach to predict DNA binding affinities of transcription factors" ;
+    sc:featureList edam:operation_0445,
+        edam:operation_2476,
+        edam:operation_2575 ;
+    sc:license "Not licensed" ;
+    sc:name "DNAffinity" ;
+    sc:url "https://github.com/Jalbiti/DNAffinity" .
+
 <https://bio.tools/dnagenie> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0128,
@@ -173904,8 +170739,21 @@ For the inner code we decide on a symbol size mi of 6 bit, for the outer code th
         "Windows" ;
     sc:url "http://biomine.cs.vcu.edu/servers/DNAgenie/" .
 
+<https://bio.tools/dnaint> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:description "Prediction of DNA Interacting Residues" ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "dnaint" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/dnaint/index.html> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/dnaint/index.html" .
+
 <https://bio.tools/dnamate> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0654 ;
@@ -173921,8 +170769,26 @@ For the inner code we decide on a symbol size mi of 6 bit, for the outer code th
     sc:url "http://melolab.org/dnaMATE/" ;
     biotools:primaryContact "Francisco Melo Ledermann" .
 
+<https://bio.tools/dnamclassmeta> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_3295,
+        edam:topic_3474 ;
+    sc:author <https://orcid.org/0000-0002-0540-9281> ;
+    sc:contributor <https://orcid.org/0000-0001-9277-502X> ;
+    sc:description "Source code for paper \"Disease classification for whole blood DNA methylation: meta-analysis, missing values imputation, and XAI\" by A. Kalyakulina, I. Yusipov, M.G. Bacalini, C. Franceschi, M. Vedunova, M. Ivanchenko." ;
+    sc:featureList edam:operation_3206,
+        edam:operation_3207 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "DNAmClassMeta" ;
+    sc:operatingSystem "Linux",
+        "Windows" ;
+    sc:softwareHelp <https://github.com/GillianGrayson/DNAmClassMeta/blob/main/README.md> ;
+    sc:url "https://github.com/GillianGrayson/DNAmClassMeta" .
+
 <https://bio.tools/dnamodannot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3168,
@@ -173942,7 +170808,7 @@ For the inner code we decide on a symbol size mi of 6 bit, for the outer code th
         <https://orcid.org/0000-0002-8913-8799> .
 
 <https://bio.tools/dnamoredb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0154,
@@ -173960,7 +170826,7 @@ For the inner code we decide on a symbol size mi of 6 bit, for the outer code th
     sc:url "https://www.genesilico.pl/DNAmoreDB/" .
 
 <https://bio.tools/dnannotator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_2885,
@@ -173977,7 +170843,7 @@ For the inner code we decide on a symbol size mi of 6 bit, for the outer code th
     sc:url "http://bioapp.psych.uic.edu/DNannotator.htm" .
 
 <https://bio.tools/dnaplotter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0654 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btn578> ;
@@ -173993,7 +170859,7 @@ For the inner code we decide on a symbol size mi of 6 bit, for the outer code th
     sc:url "http://www.sanger.ac.uk/science/tools/dnaplotter" .
 
 <https://bio.tools/dnar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_3068,
@@ -174011,14 +170877,12 @@ For the inner code we decide on a symbol size mi of 6 bit, for the outer code th
 
 <https://bio.tools/dnas> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1127" ;
-            sc:name "PDB ID" ;
-            sc:sameAs "http://edamontology.org/data_1127" ] ;
+            sc:additionalType "http://edamontology.org/data_1127" ;
+            sc:name "PDB ID" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1537" ;
-            sc:name "Protein structure report" ;
-            sc:sameAs "http://edamontology.org/data_1537" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1537" ;
+            sc:name "Protein structure report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0097 ;
     sc:citation <https://doi.org/10.1093/nar/gkw381> ;
@@ -174035,7 +170899,7 @@ For the inner code we decide on a symbol size mi of 6 bit, for the outer code th
     biotools:primaryContact "Bohdan Schneider" .
 
 <https://bio.tools/dnascent> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0749,
         edam:topic_3474 ;
@@ -174048,7 +170912,7 @@ For the inner code we decide on a symbol size mi of 6 bit, for the outer code th
     sc:url "https://github.com/MBoemo/DNAscent" .
 
 <https://bio.tools/dnaser> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation "pubmed:23118738" ;
@@ -174064,7 +170928,7 @@ For the inner code we decide on a symbol size mi of 6 bit, for the outer code th
     biotools:primaryContact "Pedro Madrigal" .
 
 <https://bio.tools/dnashape> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0654,
@@ -174081,10 +170945,9 @@ For the inner code we decide on a symbol size mi of 6 bit, for the outer code th
 
 <https://bio.tools/dnashapedtfbs> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3497" ;
-            sc:name "DNA sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_3497" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3497" ;
+            sc:name "DNA sequence (raw)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3125 ;
     sc:citation <https://doi.org/10.1016/j.cels.2016.07.001> ;
@@ -174100,7 +170963,7 @@ For the inner code we decide on a symbol size mi of 6 bit, for the outer code th
     biotools:primaryContact "Anthony Mathelier" .
 
 <https://bio.tools/dnashaper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0082,
@@ -174119,8 +170982,21 @@ For the inner code we decide on a symbol size mi of 6 bit, for the outer code th
     sc:url "http://bioconductor.org/packages/release/bioc/html/DNAshapeR.html" ;
     biotools:primaryContact "Tsu-Pei Chiu" .
 
+<https://bio.tools/dnasize> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:description "This web-server allow to compute the length of DNA or protein fragments from its electropheric mobility using a graphical method. It is based on computer program DNASIZE" ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "dnasize" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/dnasize/> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/dnasize/" .
+
 <https://bio.tools/dnasu> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0166,
@@ -174140,14 +171016,14 @@ For the inner code we decide on a symbol size mi of 6 bit, for the outer code th
 
 <https://bio.tools/dnatco> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1464" ;
-            sc:name "DNA structure" ;
-            sc:sameAs "http://edamontology.org/data_1464" ] ;
+            sc:additionalType "http://edamontology.org/data_1464" ;
+            sc:encodingFormat "http://edamontology.org/format_1477" ;
+            sc:name "DNA structure" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0889" ;
-            sc:name "Structural profile" ;
-            sc:sameAs "http://edamontology.org/data_0889" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0889" ;
+            sc:encodingFormat "http://edamontology.org/format_3464" ;
+            sc:name "Structural profile" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0097,
@@ -174178,7 +171054,7 @@ For the inner code we decide on a symbol size mi of 6 bit, for the outer code th
         "Jiří Černý" .
 
 <https://bio.tools/dnatools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0199,
@@ -174205,7 +171081,7 @@ For the inner code we decide on a symbol size mi of 6 bit, for the outer code th
     biotools:primaryContact "Sándor Pongor" .
 
 <https://bio.tools/dnatraffic> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0602,
@@ -174227,7 +171103,7 @@ For the inner code we decide on a symbol size mi of 6 bit, for the outer code th
     biotools:primaryContact "Joanna Krwawicz" .
 
 <https://bio.tools/dnatranslate> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0108,
@@ -174246,7 +171122,7 @@ For the inner code we decide on a symbol size mi of 6 bit, for the outer code th
     biotools:primaryContact "Alexander Wallar" .
 
 <https://bio.tools/dnatranslator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0654,
@@ -174263,7 +171139,7 @@ For the inner code we decide on a symbol size mi of 6 bit, for the outer code th
     biotools:primaryContact "Giuseppe Cardillo" .
 
 <https://bio.tools/dnazip> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3071 ;
@@ -174281,8 +171157,29 @@ For the inner code we decide on a symbol size mi of 6 bit, for the outer code th
     biotools:primaryContact "Chen Li",
         "Xiaohui Xie" .
 
+<https://bio.tools/dnazymebuilder> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0099,
+        edam:topic_0196,
+        edam:topic_0821,
+        edam:topic_3068 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAC269>,
+        "pubmed:35446426" ;
+    sc:description "DNAzymeBuilder is a web application enabling the in situ choice and assembly of DNA- and RNA-cleaving DNAzymes." ;
+    sc:featureList edam:operation_0310,
+        edam:operation_2421,
+        edam:operation_3795 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "DNAzymeBuilder" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://iimcb.genesilico.pl/DNAzymeBuilder" .
+
 <https://bio.tools/dnenrich> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0634,
@@ -174298,7 +171195,7 @@ For the inner code we decide on a symbol size mi of 6 bit, for the outer code th
     sc:url "https://psychgen.u.hpc.mssm.edu/dnenrich/" .
 
 <https://bio.tools/dnmf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3382,
@@ -174312,7 +171209,7 @@ For the inner code we decide on a symbol size mi of 6 bit, for the outer code th
     sc:url "https://github.com/amin-nejat/dNMF" .
 
 <https://bio.tools/dnmfilter_indel> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3474,
@@ -174329,7 +171226,7 @@ For the inner code we decide on a symbol size mi of 6 bit, for the outer code th
     sc:url "https://github.com/yongzhuang/DNMFilter_Indel" .
 
 <https://bio.tools/dnmso> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Ontology" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0121,
@@ -174348,7 +171245,7 @@ For the inner code we decide on a symbol size mi of 6 bit, for the outer code th
     sc:url "https://github.com/savastakan/dnmso" .
 
 <https://bio.tools/dnnbrain> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Suite" ;
     sc:applicationSubCategory edam:topic_0632,
@@ -174365,7 +171262,7 @@ For the inner code we decide on a symbol size mi of 6 bit, for the outer code th
     sc:url "https://github.com/BNUCNL/dnnbrain" .
 
 <https://bio.tools/dnnrmst> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0621,
@@ -174382,8 +171279,46 @@ A deep neural network model to predict restricted mean survival time.""" ;
     sc:name "DnnRMST" ;
     sc:url "http://github.com/lilizhaoUM/DnnRMST" .
 
+<https://bio.tools/dntppooldb> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0749,
+        edam:topic_2640,
+        edam:topic_3300,
+        edam:topic_3407,
+        edam:topic_3912 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAB910>,
+        "pmcid:PMC8728230",
+        "pubmed:34643700" ;
+    sc:description "A manually curated database of experimentally determined dNTP pools and pool changes in biological samples." ;
+    sc:featureList edam:operation_0362,
+        edam:operation_0558,
+        edam:operation_2422,
+        edam:operation_3799 ;
+    sc:isAccessibleForFree true ;
+    sc:name "dNTPpoolDB" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://dntppool.org/" .
+
+<https://bio.tools/do-conv> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_3382,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1109/TIP.2022.3175432>,
+        "pubmed:35594231" ;
+    sc:description "DO-Conv is a depthwise over-parameterized convolutional layer, which can be used as a replacement of conventional convolutional layer in CNNs in the training phase to achieve higher accuracies." ;
+    sc:featureList edam:operation_3443,
+        edam:operation_3454 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "DO-Conv" ;
+    sc:url "https://github.com/yangyanli/DO-Conv" .
+
 <https://bio.tools/do_x3dna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0176,
@@ -174404,7 +171339,7 @@ A deep neural network model to predict restricted mean survival time.""" ;
     biotools:primaryContact "Rajendra Kumar" .
 
 <https://bio.tools/dochap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_0736,
@@ -174425,7 +171360,7 @@ A deep neural network model to predict restricted mean survival time.""" ;
     biotools:primaryContact "Tal Shay" .
 
 <https://bio.tools/dockNmine> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0154,
         edam:topic_0196,
@@ -174447,7 +171382,7 @@ The dockNmine portal aims at gathering public and private data into a unique ser
     sc:url "http://www.ufip.univ-nantes.fr/tools/docknmine/" .
 
 <https://bio.tools/dockcov2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0821,
@@ -174465,7 +171400,7 @@ The dockNmine portal aims at gathering public and private data into a unique ser
     sc:url "https://covirus.cc/drugs/" .
 
 <https://bio.tools/dockecr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2275,
@@ -174485,7 +171420,7 @@ The dockNmine portal aims at gathering public and private data into a unique ser
     sc:url "https://github.com/rochoa85/dockECR" .
 
 <https://bio.tools/docker4seq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622 ;
     sc:author <https://orcid.org/0000-0001-6125-9460> ;
@@ -174503,8 +171438,28 @@ docker4seq R package contains all the R functions required to handle all the ste
     sc:url "https://github.com/kendomaniac/docker4seq" ;
     biotools:primaryContact "Raffaele Calogero" .
 
+<https://bio.tools/dockingpie> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Plug-in" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_2275,
+        edam:topic_3336 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC452>,
+        "pubmed:35792827" ;
+    sc:description "DockingPie is a plugin of the popular molecular graphics system PyMOL that offers a versatile and user-friendly graphical user interface for assisting molecular and consensus docking analyses." ;
+    sc:featureList edam:operation_0482,
+        edam:operation_3899,
+        edam:operation_4009 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "DockingPie" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/paiardin/DockingPie" .
+
 <https://bio.tools/dockonsurf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_2275,
         edam:topic_3047,
@@ -174529,7 +171484,7 @@ Automatization for adsorbing molecules on surfaces and screening the different a
     sc:url "https://gitlab.com/lch_interfaces/dockonsurf" .
 
 <https://bio.tools/dockscore> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0081,
@@ -174549,7 +171504,7 @@ Automatization for adsorbing molecules on surfaces and screening the different a
     biotools:primaryContact "Support" .
 
 <https://bio.tools/dockstore> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Database portal" ;
     sc:applicationSubCategory edam:topic_0091,
@@ -174569,8 +171524,30 @@ Automatization for adsorbing molecules on surfaces and screening the different a
     sc:softwareHelp <https://docs.dockstore.org> ;
     sc:url "https://dockstore.org" .
 
+<https://bio.tools/dockstream> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_2275,
+        edam:topic_3336,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1186/S13321-021-00563-7>,
+        "pmcid:PMC8596819",
+        "pubmed:34789335" ;
+    sc:description "A docking wrapper to enhance de novo molecular design." ;
+    sc:featureList edam:operation_0478,
+        edam:operation_3935,
+        edam:operation_4009 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Apache-2.0" ;
+    sc:name "DockStream" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/MolecularAI/DockStream" .
+
 <https://bio.tools/dockthor-vs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0199,
@@ -174585,20 +171562,8 @@ Automatization for adsorbing molecules on surfaces and screening the different a
     sc:name "DockThor-VS" ;
     sc:url "http://www.dockthor.lncc.br" .
 
-<https://bio.tools/docxtemplate> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0176,
-        edam:topic_3314,
-        edam:topic_3489 ;
-    sc:citation <https://doi.org/10.1101/724567> ;
-    sc:description "> VERY_LOW CONFIDENCE! | > CORRECT NAME OF TOOL COULD ALSO BE 'Phenix', 'restraints', 'Amber', 'refinement' | Improved chemistry restraints for crystallographic refinement by integrating the Amber force field into Phenix | Word templates and tools for Windows | The IUCr Word templates utilize the content management features and document styles of Word to format your manuscript and to store essential details for submission of your manuscript" ;
-    sc:featureList edam:operation_0249,
-        edam:operation_0322,
-        edam:operation_3431 ;
-    sc:name "docxtemplate" ;
-    sc:url "http://journals.iucr.org/services/docxtemplate/" .
-
 <https://bio.tools/dodo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Ontology" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0625,
@@ -174615,7 +171580,7 @@ Automatization for adsorbing molecules on surfaces and screening the different a
     sc:url "https://github.com/Elysheba/DO" .
 
 <https://bio.tools/dodona> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:description "Dodona is a free online exercise platform for learning to code. It wants to teach students how to program in the most meaningful and effective way possible, by using different techniques to apply the advantages of personalized coaching in contexts where students usually only have access to traditional coaching (e.g. lectures or exercise sessions) or even no coaching at all (e.g. independent learning or homework)." ;
     sc:name "Dodona" ;
@@ -174624,7 +171589,7 @@ Automatization for adsorbing molecules on surfaces and screening the different a
     sc:url "https://dodona.ugent.be" .
 
 <https://bio.tools/doe_joint_genome_institute_genome_portal> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0621,
@@ -174645,7 +171610,7 @@ Automatization for adsorbing molecules on surfaces and screening the different a
     biotools:primaryContact "I.V. Grigoriev" .
 
 <https://bio.tools/doelan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0654,
@@ -174666,7 +171631,7 @@ Automatization for adsorbing molecules on surfaces and screening the different a
     biotools:primaryContact "Doelan Support" .
 
 <https://bio.tools/doepipeline> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0769,
@@ -174687,7 +171652,7 @@ Optimize your data processing pipelines with doepipeline. The optimization strat
     sc:url "https://github.com/clicumu/doepipeline" .
 
 <https://bio.tools/doestrare> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3325,
@@ -174707,18 +171672,18 @@ Optimize your data processing pipelines with doepipeline. The optimization strat
 
 <https://bio.tools/dogsitescorer> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ] ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein structure" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2878" ;
-            sc:name "Protein structural motif" ;
-            sc:sameAs "http://edamontology.org/data_2878" ],
+            sc:additionalType "http://edamontology.org/data_0897" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Protein property" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0897" ;
-            sc:name "Protein property" ;
-            sc:sameAs "http://edamontology.org/data_0897" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2878" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein structural motif" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3474,
         edam:topic_3534 ;
@@ -174736,14 +171701,14 @@ Optimize your data processing pipelines with doepipeline. The optimization strat
 
 <https://bio.tools/dolce> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1070" ;
-            sc:name "Structure ID" ;
-            sc:sameAs "http://edamontology.org/data_1070" ] ;
+            sc:additionalType "http://edamontology.org/data_1070" ;
+            sc:encodingFormat "http://edamontology.org/format_1475" ;
+            sc:name "Structure ID" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3128" ;
-            sc:name "Nucleic acid structure report" ;
-            sc:sameAs "http://edamontology.org/data_3128" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3128" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Nucleic acid structure report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_1317 ;
@@ -174768,7 +171733,7 @@ Optimize your data processing pipelines with doepipeline. The optimization strat
         "Petr Cech" .
 
 <https://bio.tools/dolphinnext> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0769,
@@ -174780,7 +171745,7 @@ Optimize your data processing pipelines with doepipeline. The optimization strat
     sc:url "https://dolphinnext.umassmed.edu/" .
 
 <https://bio.tools/dom2vec> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0218,
@@ -174795,7 +171760,7 @@ Optimize your data processing pipelines with doepipeline. The optimization strat
     sc:url "https://github.com/damianosmel/dom2vec" .
 
 <https://bio.tools/domac> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -174813,7 +171778,7 @@ Optimize your data processing pipelines with doepipeline. The optimization strat
     sc:url "http://casp.rnet.missouri.edu/domac.html" .
 
 <https://bio.tools/domaination> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1002/prot.10175> ;
@@ -174829,7 +171794,7 @@ Optimize your data processing pipelines with doepipeline. The optimization strat
     sc:url "http://www.ibi.vu.nl/programs/domainationwww/" .
 
 <https://bio.tools/domainfinder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078 ;
     sc:description "DomainFinder is an interactive program for the determination and characterization of dynamical domains in proteins. Its key features are" ;
@@ -174843,7 +171808,7 @@ Optimize your data processing pipelines with doepipeline. The optimization strat
     sc:url "http://dirac.cnrs-orleans.fr/plone/Members/hinsen" .
 
 <https://bio.tools/domainparser> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2814 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/16.12.1091>,
@@ -174858,22 +171823,22 @@ Optimize your data processing pipelines with doepipeline. The optimization strat
 
 <https://bio.tools/domainsignatures> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1355" ;
-            sc:name "Protein signature" ;
-            sc:sameAs "http://edamontology.org/data_1355" ],
+            sc:additionalType "http://edamontology.org/data_1355" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Protein signature" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1904" ;
-            sc:name "Locus ID (EntrezGene)" ;
-            sc:sameAs "http://edamontology.org/data_1904" ] ;
+            sc:additionalType "http://edamontology.org/data_1904" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Locus ID (EntrezGene)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ],
+            sc:additionalType "http://edamontology.org/data_1669" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "P-value" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1669" ;
-            sc:name "P-value" ;
-            sc:sameAs "http://edamontology.org/data_1669" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0736,
@@ -174893,7 +171858,7 @@ Optimize your data processing pipelines with doepipeline. The optimization strat
     biotools:primaryContact "Florian Hahne" .
 
 <https://bio.tools/domainviz> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0601,
         edam:topic_0623,
@@ -174911,8 +171876,28 @@ Optimize your data processing pipelines with doepipeline. The optimization strat
     sc:url "https://uhrigprotools.biology.ualberta.ca/domainviz" ;
     biotools:primaryContact "R Glen Uhrig" .
 
+<https://bio.tools/domarchive> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0610,
+        edam:topic_0749,
+        edam:topic_3500 ;
+    sc:citation <https://doi.org/10.1098/RSTB.2020.0436>,
+        "pmcid:PMC8743893",
+        "pubmed:35000444" ;
+    sc:description "DomArchive is a data package compiling dominance interaction data published over a century of research. The goal of the package is to facilitate comparative research on the structure and function of dominance hierarchies." ;
+    sc:featureList edam:operation_0310,
+        edam:operation_3435 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "DomArchive" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/DomArchive/DomArchive" .
+
 <https://bio.tools/domfun> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0602,
@@ -174927,7 +171912,7 @@ Optimize your data processing pipelines with doepipeline. The optimization strat
     sc:url "https://rubygems.org/gems/DomFun" .
 
 <https://bio.tools/domine> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0128,
@@ -174947,7 +171932,7 @@ Optimize your data processing pipelines with doepipeline. The optimization strat
     biotools:primaryContact "Raja Jothi" .
 
 <https://bio.tools/domino> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3360 ;
@@ -174964,8 +171949,27 @@ Optimize your data processing pipelines with doepipeline. The optimization strat
     biotools:primaryContact <http://orcid.org/0000-0002-6839-9148>,
         "A. Sánchez-Gracia" .
 
+<https://bio.tools/domino_web-server> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0602,
+        edam:topic_3517 ;
+    sc:citation <https://doi.org/10.1093/bioinformatics/btac067>,
+        "pmcid:PMC9004647",
+        "pubmed:35139202" ;
+    sc:description "The DOMINO web-server for active module identification analysis." ;
+    sc:featureList edam:operation_1781,
+        edam:operation_3501 ;
+    sc:isAccessibleForFree true ;
+    sc:name "DOMINO" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://domino.cs.tau.ac.il" .
+
 <https://bio.tools/dominoeffect> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0199,
@@ -174986,7 +171990,7 @@ Optimize your data processing pipelines with doepipeline. The optimization strat
         "Peter Blattmann" .
 
 <https://bio.tools/dommino> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0130,
@@ -175008,8 +172012,47 @@ Optimize your data processing pipelines with doepipeline. The optimization strat
     sc:url "http://orion.rnet.missouri.edu/~nz953/DOMMINO/" ;
     biotools:primaryContact "Dmitry Korkin" .
 
+<https://bio.tools/domprint> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:description "DisOrdered Regions LOCation in proteins" ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "dorlok" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/dorlok/index.html> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/dorlok/index.html" .
+
+<https://bio.tools/domprint_gps> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:description "Domprint is a domain-domain interaction (DDI) prediction server. It runs on a support vector machine (SVM) model which has been trained on known domain-domain interaction data (positive dataset) from 3did database. All the DDI in 3did are curated from crystal structures available in Protein Data Bank (PDB). We used a highly curated negative dataset for model training." ;
+    sc:name "domprint" ;
+    sc:url "https://webs.iiitd.edu.in/raghava/domprint/" .
+
+<https://bio.tools/dopi> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0610,
+        edam:topic_0780,
+        edam:topic_3068,
+        edam:topic_3071,
+        edam:topic_3810 ;
+    sc:citation <https://doi.org/10.1002/ECY.3801>,
+        "pubmed:35754095" ;
+    sc:description "The Database of Pollinator Interactions (DoPI) documents British pollinator-plant associations." ;
+    sc:license "Not licensed" ;
+    sc:name "DoPI" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://www.dopi.org.uk/about> ;
+    sc:url "https://www.dopi.org.uk/" .
+
 <https://bio.tools/doppelgangr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0622 ;
@@ -175027,7 +172070,7 @@ Optimize your data processing pipelines with doepipeline. The optimization strat
     biotools:primaryContact "Levi Waldron" .
 
 <https://bio.tools/doqtl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0622,
@@ -175050,14 +172093,14 @@ Optimize your data processing pipelines with doepipeline. The optimization strat
 
 <https://bio.tools/dorina> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2099" ;
-            sc:name "Name" ;
-            sc:sameAs "http://edamontology.org/data_2099" ] ;
+            sc:additionalType "http://edamontology.org/data_2099" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Name" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2080" ;
-            sc:name "Database search results" ;
-            sc:sameAs "http://edamontology.org/data_2080" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2080" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Database search results" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0204 ;
@@ -175079,7 +172122,7 @@ Optimize your data processing pipelines with doepipeline. The optimization strat
     biotools:primaryContact <http://orcid.org/0000-0002-0468-0117> .
 
 <https://bio.tools/doscheda> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -175099,26 +172142,26 @@ Optimize your data processing pipelines with doepipeline. The optimization strat
 
 <https://bio.tools/dose> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Gene expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ],
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Gene expression data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2295" ;
-            sc:name "Gene ID" ;
-            sc:sameAs "http://edamontology.org/data_2295" ],
+            sc:additionalType "http://edamontology.org/data_2295" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Gene ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0582" ;
-            sc:name "Ontology" ;
-            sc:sameAs "http://edamontology.org/data_0582" ] ;
+            sc:additionalType "http://edamontology.org/data_0582" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Ontology" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ],
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Plot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3063,
@@ -175140,7 +172183,7 @@ Optimize your data processing pipelines with doepipeline. The optimization strat
     biotools:primaryContact <http://orcid.org/0000-0002-6485-8781> .
 
 <https://bio.tools/dose-response> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3374 ;
     sc:description "Function to fit a dose-response data to a 4 parameter dose-response curve." ;
@@ -175154,7 +172197,7 @@ Optimize your data processing pipelines with doepipeline. The optimization strat
     biotools:primaryContact "Carlos Evangelista" .
 
 <https://bio.tools/dosepredict> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0202,
         edam:topic_3336,
@@ -175171,7 +172214,7 @@ Optimize your data processing pipelines with doepipeline. The optimization strat
     sc:url "http://www.DosePredict.com" .
 
 <https://bio.tools/doseresponse> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0202,
         edam:topic_3070,
@@ -175189,14 +172232,14 @@ Optimize your data processing pipelines with doepipeline. The optimization strat
 
 <https://bio.tools/dosopt> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3108" ;
-            sc:name "Experimental measurement" ;
-            sc:sameAs "http://edamontology.org/data_3108" ] ;
+            sc:additionalType "http://edamontology.org/data_3108" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Experimental measurement" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_3508" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3063,
         edam:topic_3375,
@@ -175216,7 +172259,7 @@ Optimize your data processing pipelines with doepipeline. The optimization strat
     biotools:primaryContact "Tõnis Tasa" .
 
 <https://bio.tools/dotdotdot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3308,
         edam:topic_3382 ;
@@ -175231,7 +172274,7 @@ Optimize your data processing pipelines with doepipeline. The optimization strat
     sc:url "https://github.com/LieberInstitute/dotdotdot" .
 
 <https://bio.tools/dotlet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0203,
@@ -175252,22 +172295,18 @@ Optimize your data processing pipelines with doepipeline. The optimization strat
 
 <https://bio.tools/dotmatcher> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ],
+            sc:additionalType "http://edamontology.org/data_0874" ;
+            sc:name "Comparison matrix" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0874" ;
-            sc:name "Comparison matrix" ;
-            sc:sameAs "http://edamontology.org/data_0874" ],
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0862" ;
-            sc:name "Dotplot" ;
-            sc:sameAs "http://edamontology.org/data_0862" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0862" ;
+            sc:name "Dotplot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -175297,7 +172336,7 @@ Optimize your data processing pipelines with doepipeline. The optimization strat
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/dotmatcher.html" .
 
 <https://bio.tools/dotmatcher_ws_husar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0092 ;
     sc:citation <https://doi.org/10.1016/s0168-9525(00)02024-2> ;
@@ -175313,18 +172352,15 @@ Optimize your data processing pipelines with doepipeline. The optimization strat
 
 <https://bio.tools/dotpath> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ],
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0862" ;
-            sc:name "Dotplot" ;
-            sc:sameAs "http://edamontology.org/data_0862" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0862" ;
+            sc:name "Dotplot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -175356,14 +172392,12 @@ Optimize your data processing pipelines with doepipeline. The optimization strat
 
 <https://bio.tools/dotter> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:name "Protein sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2161" ;
-            sc:name "Sequence similarity plot" ;
-            sc:sameAs "http://edamontology.org/data_2161" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2161" ;
+            sc:name "Sequence similarity plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1016/0378-1119(95)00714-8> ;
@@ -175380,18 +172414,15 @@ Optimize your data processing pipelines with doepipeline. The optimization strat
 
 <https://bio.tools/dottup> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ],
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0862" ;
-            sc:name "Dotplot" ;
-            sc:sameAs "http://edamontology.org/data_0862" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0862" ;
+            sc:name "Dotplot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -175422,7 +172453,7 @@ Optimize your data processing pipelines with doepipeline. The optimization strat
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/dottup.html" .
 
 <https://bio.tools/dottup_ws_husar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:description "Displays a wordmatch dotplot of two sequences." ;
@@ -175436,7 +172467,7 @@ Optimize your data processing pipelines with doepipeline. The optimization strat
     sc:url "http://genius.embnet.dkfz-heidelberg.de/menu/hobit/embdoc/dottup.html" .
 
 <https://bio.tools/doubler> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0625,
@@ -175451,7 +172482,7 @@ Optimize your data processing pipelines with doepipeline. The optimization strat
     sc:url "https://github.com/nle-sztyler/research-doubler" .
 
 <https://bio.tools/doublerecviz> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3293,
@@ -175467,7 +172498,7 @@ Optimize your data processing pipelines with doepipeline. The optimization strat
     sc:url "https://doublerecviz.cobius.usherbrooke.ca" .
 
 <https://bio.tools/doubletd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0625,
@@ -175487,7 +172518,7 @@ Optimize your data processing pipelines with doepipeline. The optimization strat
     sc:url "https://github.com/elkebir-group/doubletD" .
 
 <https://bio.tools/doutfinder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0157,
@@ -175508,7 +172539,7 @@ Optimize your data processing pipelines with doepipeline. The optimization strat
     biotools:primaryContact "Support" .
 
 <https://bio.tools/dove-docking> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
@@ -175530,7 +172561,7 @@ Dove evaluates computational protein-protein docking models by 8 deep learning n
     sc:url "http://kiharalab.org/dove/" .
 
 <https://bio.tools/download_image_and_update_opends> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "Downloads an image and updates an openDS object with the filesystem location" ;
     sc:featureList edam:operation_1812 ;
     sc:license "Apache-2.0" ;
@@ -175539,7 +172570,7 @@ Dove evaluates computational protein-protein docking models by 8 deep learning n
     sc:url "http://sdr.nhm.ac.uk" .
 
 <https://bio.tools/dowser> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_2830,
@@ -175555,7 +172586,7 @@ Dove evaluates computational protein-protein docking models by 8 deep learning n
     sc:url "https://bitbucket.org/kleinstein/dowser" .
 
 <https://bio.tools/dp-glpca> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:citation <https://doi.org/10.1109/TNNLS.2020.3016397>,
         "pubmed:32853153" ;
@@ -175567,7 +172598,7 @@ Dove evaluates computational protein-protein docking models by 8 deep learning n
     sc:url "https://github.com/jyh-learning/DP-GLPCA" .
 
 <https://bio.tools/dp2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0611,
         edam:topic_3382 ;
@@ -175579,7 +172610,7 @@ Dove evaluates computational protein-protein docking models by 8 deep learning n
     sc:url "https://sites.google.com/site/imagecrowdseg/home" .
 
 <https://bio.tools/dp4-ai> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0593,
         edam:topic_0749,
@@ -175600,8 +172631,28 @@ Dove evaluates computational protein-protein docking models by 8 deep learning n
         "Windows" ;
     sc:url "https://github.com/KristapsE/DP4-AI" .
 
+<https://bio.tools/dp5> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workflow" ;
+    sc:applicationSubCategory edam:topic_0593,
+        edam:topic_2269,
+        edam:topic_3047,
+        edam:topic_3316 ;
+    sc:citation <https://doi.org/10.1039/D1SC04406K>,
+        "pmcid:PMC8943899",
+        "pubmed:35432857" ;
+    sc:description "The DP5 probability, quantification and visualisation of structural uncertainty in single molecules." ;
+    sc:featureList edam:operation_0320,
+        edam:operation_0337,
+        edam:operation_3799 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "DP5" ;
+    sc:operatingSystem "Linux" ;
+    sc:url "https://github.com/Goodman-lab/DP5" .
+
 <https://bio.tools/dpcfam> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0623,
         edam:topic_0736,
@@ -175616,7 +172667,7 @@ Dove evaluates computational protein-protein docking models by 8 deep learning n
     sc:url "https://gitlab.com/ETRu/dpcfam" .
 
 <https://bio.tools/dpcnv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3168,
@@ -175630,7 +172681,7 @@ Dove evaluates computational protein-protein docking models by 8 deep learning n
     sc:url "https://github.com/BDanalysis/dpCNV/" .
 
 <https://bio.tools/dpct> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0176,
@@ -175647,7 +172698,7 @@ Dove evaluates computational protein-protein docking models by 8 deep learning n
     sc:url "https://github.com/alisn72/DPCT" .
 
 <https://bio.tools/dpctf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_3382,
         edam:topic_3474 ;
@@ -175658,7 +172709,7 @@ Dove evaluates computational protein-protein docking models by 8 deep learning n
     sc:url "https://github.com/Deng-Y/DPCTF" .
 
 <https://bio.tools/dpddi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0202,
@@ -175676,7 +172727,7 @@ Dove evaluates computational protein-protein docking models by 8 deep learning n
     sc:url "https://github.com/NWPU-903PR/DPDDI" .
 
 <https://bio.tools/dpfact> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3263,
@@ -175692,7 +172743,7 @@ Tensor factorization has been demonstrated as an efficient approach for computat
     sc:url "https://github.com/jma78/DPFact" .
 
 <https://bio.tools/dpgsea> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3308,
@@ -175708,7 +172759,7 @@ Tensor factorization has been demonstrated as an efficient approach for computat
     sc:url "https://github.com/sxf296/drug_targeting" .
 
 <https://bio.tools/dpn-sa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_3063,
         edam:topic_3474 ;
@@ -175722,8 +172773,45 @@ Tensor factorization has been demonstrated as an efficient approach for computat
     sc:name "DPN-SA" ;
     sc:url "https://github.com/Shantanu48114860/DPN-SA" .
 
+<https://bio.tools/dpprom> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0204,
+        edam:topic_0749,
+        edam:topic_0769,
+        edam:topic_3474,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.1109/JBHI.2022.3193224>,
+        "pubmed:35867364" ;
+    sc:description "DPProm: A two-layer model combined DPProm-1L and DPProm-2L, named DPProm, for predicting promoters and their types on the whole genomes of phages." ;
+    sc:featureList edam:operation_0362,
+        edam:operation_0440,
+        edam:operation_3937 ;
+    sc:license "Other" ;
+    sc:name "DPProm" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <http://bioinfo.ahu.edu.cn/DPProm/Help> ;
+    sc:url "http://bioinfo.ahu.edu.cn/DPProm" .
+
+<https://bio.tools/dprot> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:citation <https://doi.org/10.1007/s00726-008-0085-y>,
+        "pubmed:18425404" ;
+    sc:description "DPROT is a PSSM based predictor for the prediction of disordered proteins. A simple two state prediction id done over the query protein." ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "dprot" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/dprot/home.html> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/dprot/home.html" .
+
 <https://bio.tools/dpsleep> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0769 ;
     sc:citation <https://doi.org/10.1101/2021.02.02.429455> ;
@@ -175735,7 +172823,7 @@ Tensor factorization has been demonstrated as an efficient approach for computat
     biotools:primaryContact "Habiballah Rahimi-Eichi" .
 
 <https://bio.tools/dpubchem> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0202,
         edam:topic_3336,
@@ -175754,30 +172842,27 @@ Tensor factorization has been demonstrated as an efficient approach for computat
 
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-            sc:identifier "http://edamontology.org/data_1870" ;
-            sc:name "Genus name" ;
-            sc:sameAs "http://edamontology.org/data_1870" ],
+            sc:additionalType "http://edamontology.org/data_2836" ;
+            sc:name "DPVweb ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2836" ;
-            sc:name "DPVweb ID" ;
-            sc:sameAs "http://edamontology.org/data_2836" ],
+            sc:additionalType "http://edamontology.org/data_1870" ;
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-            sc:identifier "http://edamontology.org/data_2732" ;
-            sc:name "Family name" ;
-            sc:sameAs "http://edamontology.org/data_2732" ] ;
+            sc:additionalType "http://edamontology.org/data_2732" ;
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     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2530" ;
-            sc:name "Organism report" ;
-            sc:sameAs "http://edamontology.org/data_2530" ],
+            sc:additionalType "http://edamontology.org/data_2530" ;
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-            sc:name "Organism report" ;
-            sc:sameAs "http://edamontology.org/data_2530" ],
+            sc:additionalType "http://edamontology.org/data_2530" ;
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-            sc:sameAs "http://edamontology.org/data_2530" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2530" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Organism report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
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         edam:topic_0781 ;
@@ -175793,8 +172878,30 @@ Tensor factorization has been demonstrated as an efficient approach for computat
     sc:url "http://www.dpvweb.net/" ;
     biotools:primaryContact "Mike Adams" .
 
+<https://bio.tools/dqagui> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_3063,
+        edam:topic_3068,
+        edam:topic_3372,
+        edam:topic_3489 ;
+    sc:citation <https://doi.org/10.1186/S12911-022-01961-Z>,
+        "pmcid:PMC9367129",
+        "pubmed:35953813" ;
+    sc:description "A graphical user interface for the MIRACUM data quality assessment tool." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_0479,
+        edam:operation_1812 ;
+    sc:license "GPL-3.0" ;
+    sc:name "DQAgui" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://github.com/miracum/dqa-dqastats/wiki/DQAgui_intro> ;
+    sc:url "https://github.com/miracum/dqa-dqagui" .
+
 <https://bio.tools/dqastats> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_3063,
@@ -175812,8 +172919,33 @@ Tensor factorization has been demonstrated as an efficient approach for computat
         "Windows" ;
     sc:url "https://github.com/miracum/dqa-dqastats" .
 
+<https://bio.tools/dqtg-seq> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_0625,
+        edam:topic_0780,
+        edam:topic_2885 ;
+    sc:citation <https://doi.org/10.1016/J.CSBJ.2022.05.009>,
+        <https://doi.org/10.1016/J.XPLC.2022.100319>,
+        "pmcid:PMC9120062",
+        "pmcid:PMC9251438",
+        "pubmed:35576159",
+        "pubmed:35615028" ;
+    sc:description "Bulked segregant analysis methods are used to identify various types of quantitative trait loci for complex traits via extreme phenotype individuals in bi-parental segregation populations (F2, backcross, doubled haploid and recombinant inbred line)." ;
+    sc:featureList edam:operation_0282,
+        edam:operation_3196,
+        edam:operation_3799 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-2.0" ;
+    sc:name "dQTG-seq" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://cran.r-project.org/web/packages/dQTG.seq/index.html" .
+
 <https://bio.tools/dr-afc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0209,
@@ -175829,8 +172961,22 @@ Tensor factorization has been demonstrated as an efficient approach for computat
     sc:name "Dr AFC" ;
     sc:url "https://www.biosino.org/drafc" .
 
+<https://bio.tools/dr-gan> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_3382 ;
+    sc:citation <https://doi.org/10.1109/TNNLS.2022.3165573>,
+        "pubmed:35442894" ;
+    sc:description "Distribution Regularization for Text-to-Image Generation." ;
+    sc:featureList edam:operation_3435 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "DR-GAN" ;
+    sc:operatingSystem "Linux" ;
+    sc:url "https://github.com/Tan-H-C/DR-GAN-Distribution-Regularization-for-Text-to-Image-Generation" .
+
 <https://bio.tools/dr2s> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
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@@ -175850,7 +172996,7 @@ Tensor factorization has been demonstrated as an efficient approach for computat
     biotools:primaryContact <https://orcid.org/0000-0002-1190-4000> .
 
 <https://bio.tools/dr_disco> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
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@@ -175861,7 +173007,7 @@ Tensor factorization has been demonstrated as an efficient approach for computat
     sc:url "https://github.com/yhoogstrate/dr-disco" .
 
 <https://bio.tools/dragom> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
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     sc:applicationSubCategory edam:topic_0196,
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@@ -175877,7 +173023,7 @@ Tensor factorization has been demonstrated as an efficient approach for computat
     sc:url "https://github.com/benliu5085/DRAGoM" .
 
 <https://bio.tools/dragonfly> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2828,
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@@ -175897,7 +173043,7 @@ Tensor factorization has been demonstrated as an efficient approach for computat
     biotools:primaryContact "N. Duane Loh" .
 
 <https://bio.tools/drap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
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@@ -175916,7 +173062,7 @@ Tensor factorization has been demonstrated as an efficient approach for computat
     biotools:primaryContact "Support" .
 
 <https://bio.tools/drar-cpi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3336,
@@ -175941,7 +173087,7 @@ Tensor factorization has been demonstrated as an efficient approach for computat
     biotools:primaryContact "DRAR-CPI Support" .
 
 <https://bio.tools/drawalignr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0080,
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@@ -175958,7 +173104,7 @@ Tensor factorization has been demonstrated as an efficient approach for computat
     sc:url "https://github.com/Roestlab/DrawAlignR" .
 
 <https://bio.tools/drawcell> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0091,
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@@ -175979,7 +173125,7 @@ Tensor factorization has been demonstrated as an efficient approach for computat
     biotools:primaryContact "Andrew Woodward" .
 
 <https://bio.tools/drawid> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3053,
@@ -175999,7 +173145,7 @@ Tensor factorization has been demonstrated as an efficient approach for computat
     biotools:primaryContact "Ilya Kirov" .
 
 <https://bio.tools/drawproteins> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_1775 ;
@@ -176018,46 +173164,44 @@ Tensor factorization has been demonstrated as an efficient approach for computat
 
 <https://bio.tools/drcancer> a sc:SoftwareApplication ;
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-            sc:identifier "http://edamontology.org/data_3021" ;
-            sc:name "UniProt accession" ;
-            sc:sameAs "http://edamontology.org/data_3021" ],
+            sc:additionalType "http://edamontology.org/data_1016" ;
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+            sc:additionalType "http://edamontology.org/data_2563" ;
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+            sc:name "Amino acid name (single letter)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2563" ;
-            sc:name "Amino acid name (single letter)" ;
-            sc:sameAs "http://edamontology.org/data_2563" ],
+            sc:additionalType "http://edamontology.org/data_1176" ;
+            sc:name "GO concept ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2563" ;
-            sc:name "Amino acid name (single letter)" ;
-            sc:sameAs "http://edamontology.org/data_2563" ],
+            sc:additionalType "http://edamontology.org/data_3021" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "UniProt accession" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1176" ;
-            sc:name "GO concept ID" ;
-            sc:sameAs "http://edamontology.org/data_1176" ],
+            sc:additionalType "http://edamontology.org/data_1016" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Sequence position" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1176" ;
-            sc:name "GO concept ID" ;
-            sc:sameAs "http://edamontology.org/data_1176" ],
+            sc:additionalType "http://edamontology.org/data_2563" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Amino acid name (single letter)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2974" ;
-            sc:name "Protein sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_2974" ] ;
+            sc:additionalType "http://edamontology.org/data_2974" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence (raw)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1622" ;
-            sc:name "Disease report" ;
-            sc:sameAs "http://edamontology.org/data_1622" ],
+            sc:additionalType "http://edamontology.org/data_1622" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Disease report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1622" ;
-            sc:name "Disease report" ;
-            sc:sameAs "http://edamontology.org/data_1622" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1622" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Disease report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0123,
         edam:topic_2640,
@@ -176077,8 +173221,28 @@ Tensor factorization has been demonstrated as an efficient approach for computat
     sc:url "http://snps.biofold.org/drcancer" ;
     biotools:primaryContact <http://orcid.org/0000-0002-2323-0963> .
 
+<https://bio.tools/drcon> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Desktop application" ;
+    sc:applicationSubCategory edam:topic_0082,
+        edam:topic_2814,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1101/2021.09.19.460941> ;
+    sc:description "A deep dilated convolutional residual network for predicting interchain contacts of protein homodimers." ;
+    sc:featureList edam:operation_0272,
+        edam:operation_0474,
+        edam:operation_2950,
+        edam:operation_3350,
+        edam:operation_3927 ;
+    sc:isAccessibleForFree true ;
+    sc:name "DRCon" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/jianlin-cheng/DRCon" .
+
 <https://bio.tools/drda> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0202,
         edam:topic_2840,
@@ -176095,8 +173259,33 @@ Tensor factorization has been demonstrated as an efficient approach for computat
         "Windows" ;
     sc:url "https://github.com/albertopessia/drda" .
 
+<https://bio.tools/drda-net> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application",
+        "Workbench" ;
+    sc:applicationSubCategory edam:topic_0769,
+        edam:topic_2640,
+        edam:topic_3382,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1016/J.COMPBIOMED.2022.105437>,
+        "pubmed:35339096" ;
+    sc:description "Dense Residual Dual-shuffle Attention Net (DRDA-Net) : an efficient framework for breast cancer detection. Overall workflow of the proposed framework is shown below-." ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "DRDA-Net" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/SohamChattopadhyayEE/DRDA-Net" .
+
+<https://bio.tools/drderma> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:description "Android app for skin disease prediction using deep learning" ;
+    sc:name "Drderma" ;
+    sc:url "https://github.com/raghavagps/drderma" .
+
 <https://bio.tools/drdock> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0209,
@@ -176114,7 +173303,7 @@ Tensor factorization has been demonstrated as an efficient approach for computat
     sc:url "https://dyn.life.nthu.edu.tw/drdock/" .
 
 <https://bio.tools/dream> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Library" ;
     sc:applicationSubCategory edam:topic_3300,
@@ -176126,8 +173315,53 @@ Tensor factorization has been demonstrated as an efficient approach for computat
     sc:softwareHelp <http://github.com/zuoxinian/CCS/blob/master/H3/DREAM/DREAM1_demo.pzfx> ;
     sc:url "http://ibraindata.com/tools/dream" .
 
+<https://bio.tools/dream_database> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_2640,
+        edam:topic_3336,
+        edam:topic_3512,
+        edam:topic_3518 ;
+    sc:citation <https://doi.org/10.1186/S12943-021-01436-1>,
+        "pmcid:PMC8590212",
+        "pubmed:34774049" ;
+    sc:description "A database of experimentally supported protein-coding RNAs and drug associations in human cancer." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_0337,
+        edam:operation_2436 ;
+    sc:isAccessibleForFree true ;
+    sc:name "DREAM" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://bio-big-data.cn:8080/DREAM" .
+
+<https://bio.tools/dreamdia> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0080,
+        edam:topic_0121,
+        edam:topic_0154,
+        edam:topic_0605,
+        edam:topic_3520 ;
+    sc:citation <https://doi.org/10.1038/S42003-021-02726-6>,
+        "pmcid:PMC8517002",
+        "pubmed:34650228" ;
+    sc:description "Software for data-independent acquisition (DIA) data analysis with deep representation features." ;
+    sc:featureList edam:operation_3629,
+        edam:operation_3631,
+        edam:operation_3799 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Apache-2.0" ;
+    sc:name "DreamDIA" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/xmuyulab/DreamDIA-XMBD" .
+
 <https://bio.tools/dreamdia-xmbd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -176146,7 +173380,7 @@ Tensor factorization has been demonstrated as an efficient approach for computat
         "Jiahuai Han" .
 
 <https://bio.tools/dreamtools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2259,
         edam:topic_3342,
@@ -176166,7 +173400,7 @@ Tensor factorization has been demonstrated as an efficient approach for computat
     biotools:primaryContact <http://orcid.org/0000-0001-6286-1138> .
 
 <https://bio.tools/dredge> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0203,
@@ -176183,18 +173417,15 @@ Tensor factorization has been demonstrated as an efficient approach for computat
 
 <https://bio.tools/dreg> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2887" ;
-            sc:name "Nucleic acid sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2887" ],
+            sc:additionalType "http://edamontology.org/data_1352" ;
+            sc:name "Regular expression" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1352" ;
-            sc:name "Regular expression" ;
-            sc:sameAs "http://edamontology.org/data_1352" ] ;
+            sc:additionalType "http://edamontology.org/data_2887" ;
+            sc:name "Nucleic acid sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1114" ;
-            sc:name "Sequence motif identifier" ;
-            sc:sameAs "http://edamontology.org/data_1114" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1114" ;
+            sc:name "Sequence motif identifier" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0160 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -176225,7 +173456,7 @@ Tensor factorization has been demonstrated as an efficient approach for computat
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/dreg.html" .
 
 <https://bio.tools/dreg-pathway> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0621,
@@ -176245,8 +173476,21 @@ Tensor factorization has been demonstrated as an efficient approach for computat
     sc:url "https://dREG.dnasequence.org/" .
 
 <https://bio.tools/dreimt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
-    sc:additionalType "Web application" ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_0928" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Gene expression profile" ] ;
+    bsc:output [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1621" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Pharmacogenomic test report" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_0928" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Gene expression profile" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web API",
+        "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0203,
         edam:topic_0634,
@@ -176255,11 +173499,20 @@ Tensor factorization has been demonstrated as an efficient approach for computat
     sc:description "DREIMT is a bioinformatics tool for hypothesis generation and prioritization of drugs capable of modulating immune cell activity from transcriptomics data." ;
     sc:featureList edam:operation_0337,
         edam:operation_2495 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
     sc:name "DREIMT" ;
-    sc:url "http://www.dreimt.org" .
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:provider "BU_CNIO",
+        "CNIO" ;
+    sc:softwareVersion "v20200914" ;
+    sc:url "http://www.dreimt.org" ;
+    biotools:primaryContact <https://orcid.org/0000-0002-4146-0551> .
 
 <https://bio.tools/drep> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0622,
@@ -176275,7 +173528,7 @@ Tensor factorization has been demonstrated as an efficient approach for computat
     biotools:primaryContact "Matt Olm" .
 
 <https://bio.tools/drexplorer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3855 ;
@@ -176292,7 +173545,7 @@ Tensor factorization has been demonstrated as an efficient approach for computat
     biotools:primaryContact "Jing Wang" .
 
 <https://bio.tools/drfast> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0622,
@@ -176308,10 +173561,9 @@ Tensor factorization has been demonstrated as an efficient approach for computat
 
 <https://bio.tools/drfinddata> a sc:SoftwareApplication ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0957" ;
-            sc:name "Database metadata" ;
-            sc:sameAs "http://edamontology.org/data_0957" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0957" ;
+            sc:name "Database metadata" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0219 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -176342,10 +173594,9 @@ Tensor factorization has been demonstrated as an efficient approach for computat
 
 <https://bio.tools/drfindformat> a sc:SoftwareApplication ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0957" ;
-            sc:name "Database metadata" ;
-            sc:sameAs "http://edamontology.org/data_0957" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0957" ;
+            sc:name "Database metadata" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0219 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -176376,10 +173627,9 @@ Tensor factorization has been demonstrated as an efficient approach for computat
 
 <https://bio.tools/drfindid> a sc:SoftwareApplication ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0957" ;
-            sc:name "Database metadata" ;
-            sc:sameAs "http://edamontology.org/data_0957" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0957" ;
+            sc:name "Database metadata" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0219 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -176410,10 +173660,9 @@ Tensor factorization has been demonstrated as an efficient approach for computat
 
 <https://bio.tools/drfindresource> a sc:SoftwareApplication ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0957" ;
-            sc:name "Database metadata" ;
-            sc:sameAs "http://edamontology.org/data_0957" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0957" ;
+            sc:name "Database metadata" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0219 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -176442,8 +173691,31 @@ Tensor factorization has been demonstrated as an efficient approach for computat
     sc:softwareVersion "r6" ;
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/drfindresource.html" .
 
+<https://bio.tools/drga> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0199,
+        edam:topic_0602,
+        edam:topic_0634,
+        edam:topic_2640,
+        edam:topic_3360 ;
+    sc:citation <https://doi.org/10.1186/S12859-022-04606-0>,
+        "pmcid:PMC8897886",
+        "pubmed:35247965" ;
+    sc:description "DrGA is a novel R package that has been developed based on the idea of our recent driver gene analysis scheme." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_3463,
+        edam:operation_3501 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "DrGA" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/huynguyen250896/DrGA" .
+
 <https://bio.tools/drgap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_2830,
@@ -176461,14 +173733,12 @@ Tensor factorization has been demonstrated as an efficient approach for computat
 
 <https://bio.tools/drget> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0957" ;
-            sc:name "Database metadata" ;
-            sc:sameAs "http://edamontology.org/data_0957" ] ;
+            sc:additionalType "http://edamontology.org/data_0957" ;
+            sc:name "Database metadata" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0957" ;
-            sc:name "Database metadata" ;
-            sc:sameAs "http://edamontology.org/data_0957" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0957" ;
+            sc:name "Database metadata" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -176498,7 +173768,7 @@ Tensor factorization has been demonstrated as an efficient approach for computat
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/drget.html" .
 
 <https://bio.tools/driftage> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_3473,
         edam:topic_3474 ;
@@ -176518,7 +173788,7 @@ Tensor factorization has been demonstrated as an efficient approach for computat
     sc:url "https://github.com/dmvieira/driftage" .
 
 <https://bio.tools/drim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0208,
         edam:topic_0602,
@@ -176537,7 +173807,7 @@ Tensor factorization has been demonstrated as an efficient approach for computat
     sc:url "http://biohealth.snu.ac.kr/software/DRIM/" .
 
 <https://bio.tools/drimc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0634,
         edam:topic_3336,
@@ -176551,7 +173821,7 @@ Tensor factorization has been demonstrated as an efficient approach for computat
     sc:url "https://github.com/linwang1982/DRIMC" .
 
 <https://bio.tools/drimpute> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3168,
         edam:topic_3170 ;
@@ -176568,7 +173838,7 @@ Tensor factorization has been demonstrated as an efficient approach for computat
     biotools:primaryContact "Wuming Gong" .
 
 <https://bio.tools/drimseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -176590,7 +173860,7 @@ Tensor factorization has been demonstrated as an efficient approach for computat
     biotools:primaryContact "Malgorzata Nowicka" .
 
 <https://bio.tools/drimust> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654 ;
     sc:citation <https://doi.org/10.1093/nar/gks206>,
@@ -176606,14 +173876,12 @@ Tensor factorization has been demonstrated as an efficient approach for computat
 
 <https://bio.tools/drip-pred> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:name "Protein sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:name "Protein features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1007/s10858-009-9386-z> ;
@@ -176624,8 +173892,30 @@ Tensor factorization has been demonstrated as an efficient approach for computat
     sc:softwareVersion "1" ;
     sc:url "http://www.sbc.su.se/%7Emaccallr/disorder/cgi-bin/submit.cgi" .
 
+<https://bio.tools/driparf> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0659,
+        edam:topic_2229,
+        edam:topic_3170,
+        edam:topic_3512,
+        edam:topic_3520 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAC484>,
+        "pubmed:35687114" ;
+    sc:description "R package for the Analysis of Ribosomal RNA Fragments, generally generated by Ribosome Profiling (Ribo-Seq) experiments." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_3435,
+        edam:operation_3501 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "dripARF" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/fallerlab/ARF" .
+
 <https://bio.tools/drivaer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3170 ;
     sc:description "DrivAER is a method for identification of Driving transcriptional programs based on AutoEncoder derived Relevance scores. DrivAER infers relevance scores for transcriptional programs with respect to specified outcomes of interest in single-cell RNA sequencing data, such as psuedotemporal ordering or disease status." ;
@@ -176635,7 +173925,7 @@ Tensor factorization has been demonstrated as an efficient approach for computat
     sc:url "https://github.com/lkmklsmn/DrivAER" .
 
 <https://bio.tools/driver> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0602,
@@ -176652,7 +173942,7 @@ Tensor factorization has been demonstrated as an efficient approach for computat
     sc:url "https://cran.r-project.org/package=driveR" .
 
 <https://bio.tools/drivergroup> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0605,
@@ -176669,7 +173959,7 @@ Tensor factorization has been demonstrated as an efficient approach for computat
     sc:url "https://github.com/pvvhoang/DriverGroup" .
 
 <https://bio.tools/drivernet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2533,
@@ -176689,7 +173979,7 @@ Tensor factorization has been demonstrated as an efficient approach for computat
     biotools:primaryContact "Jiarui Ding" .
 
 <https://bio.tools/driverpower> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0659,
@@ -176708,8 +173998,31 @@ Tensor factorization has been demonstrated as an efficient approach for computat
     sc:name "DriverPower" ;
     sc:url "https://github.com/smshuai/DriverPower" .
 
+<https://bio.tools/driverrwh> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0199,
+        edam:topic_0602,
+        edam:topic_0622,
+        edam:topic_2640,
+        edam:topic_3168 ;
+    sc:citation <https://doi.org/10.1186/S12859-022-04788-7>,
+        "pmcid:PMC9281118",
+        "pubmed:35831792" ;
+    sc:description "DriverRWH: discovering cancer driver genes by random walk on a gene mutation hypergraph" ;
+    sc:featureList edam:operation_0306,
+        edam:operation_2436,
+        edam:operation_2454 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "DriverRWH" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/ShandongUniversityZhanglab/DriverRWH" .
+
 <https://bio.tools/driveways> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0602,
@@ -176723,7 +174036,7 @@ Tensor factorization has been demonstrated as an efficient approach for computat
     sc:url "https://github.com/abu-compbio/DriveWays" .
 
 <https://bio.tools/drjcc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0121,
@@ -176740,7 +174053,7 @@ Tensor factorization has been demonstrated as an efficient approach for computat
     sc:url "https://github.com/xkmaxidian/DRjCC" .
 
 <https://bio.tools/drl4cellmovement> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3474,
@@ -176757,7 +174070,7 @@ Tensor factorization has been demonstrated as an efficient approach for computat
         "Zhirong Bao" .
 
 <https://bio.tools/drlumi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0804,
         edam:topic_3071,
@@ -176775,7 +174088,7 @@ Tensor factorization has been demonstrated as an efficient approach for computat
     biotools:primaryContact "Hector Sanz" .
 
 <https://bio.tools/droid> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0128,
@@ -176795,7 +174108,7 @@ Tensor factorization has been demonstrated as an efficient approach for computat
     biotools:primaryContact "DroID Support" .
 
 <https://bio.tools/droids> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0176,
         edam:topic_2814 ;
@@ -176815,26 +174128,25 @@ Tensor factorization has been demonstrated as an efficient approach for computat
 
 <https://bio.tools/dropClust> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0842" ;
-            sc:name "Identifier" ;
-            sc:sameAs "http://edamontology.org/data_0842" ],
+            sc:additionalType "http://edamontology.org/data_3112" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "Gene expression matrix" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0842" ;
-            sc:name "Identifier" ;
-            sc:sameAs "http://edamontology.org/data_0842" ],
+            sc:additionalType "http://edamontology.org/data_0842" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Identifier" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3112" ;
-            sc:name "Gene expression matrix" ;
-            sc:sameAs "http://edamontology.org/data_3112" ] ;
+            sc:additionalType "http://edamontology.org/data_0842" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Identifier" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ],
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:name "Image" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Web application" ;
     sc:applicationSubCategory edam:topic_3308 ;
@@ -176855,7 +174167,7 @@ Tensor factorization has been demonstrated as an efficient approach for computat
     sc:url "https://debsinha.shinyapps.io/dropClust/" .
 
 <https://bio.tools/dropkick> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0749,
@@ -176872,7 +174184,7 @@ dropkick works primarily with scanpy's AnnData objects, and accepts input files
     sc:url "http://pypi.org/project/dropkick/" .
 
 <https://bio.tools/dropletqc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3170,
@@ -176891,7 +174203,7 @@ dropkick works primarily with scanpy's AnnData objects, and accepts input files
     sc:url "https://github.com/powellgenomicslab/DropletQC" .
 
 <https://bio.tools/dropletutils> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3168,
@@ -176913,7 +174225,7 @@ dropkick works primarily with scanpy's AnnData objects, and accepts input files
     biotools:primaryContact "Aaron Lun" .
 
 <https://bio.tools/dropnet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0602,
@@ -176935,7 +174247,7 @@ dropkick works primarily with scanpy's AnnData objects, and accepts input files
     biotools:primaryContact "RENAUD Yoan" .
 
 <https://bio.tools/drosophila_dnase_i_footprint_database> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0749,
@@ -176951,8 +174263,17 @@ dropkick works primarily with scanpy's AnnData objects, and accepts input files
     sc:url "http://www.flyreg.org/" ;
     biotools:primaryContact "Casey Bergman" .
 
+<https://bio.tools/drpbind> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:description "DRPBind allows the prediction of DNA, RNA and Protein binding residues in intrinsically disordered proteins." ;
+    sc:isAccessibleForFree true ;
+    sc:name "DRPBind" ;
+    sc:operatingSystem "Linux" ;
+    sc:url "https://github.com/roneshsharma/DNA-RNA-Protein-Binding/wiki" .
+
 <https://bio.tools/drpl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_3382 ;
     sc:citation <https://doi.org/10.1109/TIP.2020.2976190>,
@@ -176963,7 +174284,7 @@ dropkick works primarily with scanpy's AnnData objects, and accepts input files
     sc:url "https://github.com/sasky1/DPRL" .
 
 <https://bio.tools/drpnet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0611,
         edam:topic_3474 ;
@@ -176978,8 +174299,29 @@ dropkick works primarily with scanpy's AnnData objects, and accepts input files
     sc:url "https://github.com/emcoregit/DRPnet" ;
     biotools:primaryContact <https://orcid.org/0000-0001-7283-3755> .
 
+<https://bio.tools/drr4covid> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_3384,
+        edam:topic_3452,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1109/ACCESS.2020.3038279>,
+        "pmcid:PMC8545269",
+        "pubmed:34812368" ;
+    sc:description "Learning Automated COVID-19 Infection Segmentation From Digitally Reconstructed Radiographs." ;
+    sc:featureList edam:operation_3435,
+        edam:operation_3553,
+        edam:operation_3799 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "DRR4Covid" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/PengyiZhang/DRR4Covid" .
+
 <https://bio.tools/drsasp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0081 ;
@@ -176994,7 +174336,7 @@ dropkick works primarily with scanpy's AnnData objects, and accepts input files
     biotools:primaryContact "Geoffrey J. Barton" .
 
 <https://bio.tools/drscdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3068,
@@ -177011,14 +174353,12 @@ dropkick works primarily with scanpy's AnnData objects, and accepts input files
 
 <https://bio.tools/drtext> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0957" ;
-            sc:name "Database metadata" ;
-            sc:sameAs "http://edamontology.org/data_0957" ] ;
+            sc:additionalType "http://edamontology.org/data_0957" ;
+            sc:name "Database metadata" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0957" ;
-            sc:name "Database metadata" ;
-            sc:sameAs "http://edamontology.org/data_0957" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0957" ;
+            sc:name "Database metadata" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -177048,7 +174388,7 @@ dropkick works primarily with scanpy's AnnData objects, and accepts input files
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/drtext.html" .
 
 <https://bio.tools/drug-herb-interaction> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_3068,
         edam:topic_3303,
@@ -177067,7 +174407,7 @@ dropkick works primarily with scanpy's AnnData objects, and accepts input files
     sc:url "https://drug-herb-interaction.netlify.com" .
 
 <https://bio.tools/drug-target_explorer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2258,
         edam:topic_3071,
@@ -177087,7 +174427,7 @@ dropkick works primarily with scanpy's AnnData objects, and accepts input files
     biotools:primaryContact "Sara Gosline" .
 
 <https://bio.tools/drug2gene> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0209,
@@ -177108,7 +174448,7 @@ dropkick works primarily with scanpy's AnnData objects, and accepts input files
     biotools:primaryContact "Bertram Weiss" .
 
 <https://bio.tools/drug2ways> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0202,
@@ -177126,7 +174466,7 @@ dropkick works primarily with scanpy's AnnData objects, and accepts input files
     sc:url "https://github.com/drug2ways/drug2ways" .
 
 <https://bio.tools/drugZ> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0749,
@@ -177141,7 +174481,7 @@ dropkick works primarily with scanpy's AnnData objects, and accepts input files
     sc:url "http://github.com/hart-lab/drugz" .
 
 <https://bio.tools/drugbank> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0202,
@@ -177164,7 +174504,7 @@ dropkick works primarily with scanpy's AnnData objects, and accepts input files
     biotools:primaryContact "David S. Wishart" .
 
 <https://bio.tools/drugcentral> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0202,
@@ -177183,16 +174523,34 @@ dropkick works primarily with scanpy's AnnData objects, and accepts input files
     sc:name "DrugCentral" ;
     sc:url "http://drugcentral.org" .
 
+<https://bio.tools/drugcvar> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0199,
+        edam:topic_2640,
+        edam:topic_3379,
+        edam:topic_3577 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC273>,
+        "pubmed:35426945" ;
+    sc:description "A platform for evidence-based drug annotation for genetic variants in cancer" ;
+    sc:featureList edam:operation_0224 ;
+    sc:license "Not licensed" ;
+    sc:name "DrugCVar" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://drugcvar.omicsbio.info" .
+
 <https://bio.tools/drugebility_blast_search> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1566" ;
-            sc:name "Protein-ligand interaction report" ;
-            sc:sameAs "http://edamontology.org/data_1566" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1566" ;
+            sc:name "Protein-ligand interaction report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0154,
@@ -177214,7 +174572,7 @@ dropkick works primarily with scanpy's AnnData objects, and accepts input files
     biotools:primaryContact "Mark Davies" .
 
 <https://bio.tools/drugevar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0202,
         edam:topic_0208 ;
@@ -177231,8 +174589,32 @@ dropkick works primarily with scanpy's AnnData objects, and accepts input files
     sc:url "http://www.genomicmedicinealliance.org/working-groups/pharmacogenomics/80-genomic-medicine-alliance/137-drugevar-database" ;
     biotools:primaryContact "George P Patrinos" .
 
+<https://bio.tools/drugex> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0209,
+        edam:topic_2258,
+        edam:topic_3047,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1186/S13321-021-00561-9>,
+        "pmcid:PMC8588612",
+        "pubmed:34772471" ;
+    sc:description "Deep learning toolkit for Drug Design with Pareto-based Multi-Objective optimization in Polypharmacology" ;
+    sc:featureList edam:operation_0269,
+        edam:operation_0479,
+        edam:operation_3216,
+        edam:operation_4009 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "DrugEx" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://github.com/XuhanLiu/DrugEx" .
+
 <https://bio.tools/druggable> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
         edam:topic_2640,
@@ -177249,7 +174631,7 @@ Machine Learning for druggable protein classifiers.""" ;
     sc:url "https://github.com/muntisa/machine-learning-for-druggable-proteins" .
 
 <https://bio.tools/drugmonizome> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0202,
@@ -177271,7 +174653,7 @@ Machine Learning for druggable protein classifiers.""" ;
     biotools:primaryContact "Avi Ma’ayan" .
 
 <https://bio.tools/drugmonizome-ml> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0202,
@@ -177293,7 +174675,7 @@ Machine Learning for druggable protein classifiers.""" ;
     biotools:primaryContact "Avi Ma’ayan" .
 
 <https://bio.tools/drugorchestra> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0208,
@@ -177308,7 +174690,7 @@ Machine Learning for druggable protein classifiers.""" ;
     sc:url "https://github.com/jiangdada1221/DrugOrchestra" .
 
 <https://bio.tools/drugpy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Script" ;
     sc:applicationSubCategory edam:topic_0140,
@@ -177330,7 +174712,7 @@ Machine Learning for druggable protein classifiers.""" ;
     sc:url "https://github.com/labimm/DRUGpy/" .
 
 <https://bio.tools/drugrepv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0781,
@@ -177347,7 +174729,7 @@ Machine Learning for druggable protein classifiers.""" ;
     biotools:primaryContact "Manoj Kumar" .
 
 <https://bio.tools/drugscoreppi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0602,
@@ -177364,7 +174746,7 @@ Machine Learning for druggable protein classifiers.""" ;
     biotools:primaryContact "DrugScore PPI Support" .
 
 <https://bio.tools/drugsimdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0202,
@@ -177381,7 +174763,7 @@ Machine Learning for druggable protein classifiers.""" ;
     sc:url "http://vafaeelab.com/drugSimDB.html" .
 
 <https://bio.tools/drugsniper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_2640,
@@ -177397,7 +174779,7 @@ Machine Learning for druggable protein classifiers.""" ;
     sc:url "http://biotecnun.unav.es/app/DrugSniper" .
 
 <https://bio.tools/drugspacex> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2258,
@@ -177415,7 +174797,7 @@ Machine Learning for druggable protein classifiers.""" ;
     sc:url "https://drugspacex.simm.ac.cn" .
 
 <https://bio.tools/drugvirus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3324,
         edam:topic_3336,
@@ -177435,8 +174817,33 @@ Machine Learning for druggable protein classifiers.""" ;
     sc:name "DrugVirus" ;
     sc:url "https://drugvirus.info/" .
 
+<https://bio.tools/drugvirus_info> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_3305,
+        edam:topic_3336,
+        edam:topic_3373 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAC348>,
+        "pmcid:PMC9252782",
+        "pubmed:35610052" ;
+    sc:description "An integrative data portal for broad-spectrum antivirals (BSA) and BSA-containing drug combinations (BCCs)." ;
+    sc:featureList edam:operation_0224,
+        edam:operation_3432,
+        edam:operation_4009 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Other" ;
+    sc:name "DrugVirus.info" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://drugvirus.info/tech_doc/> ;
+    sc:softwareVersion "2.0" ;
+    sc:url "http://DrugVirus.info" .
+
 <https://bio.tools/drugvsdisease> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0202,
@@ -177455,7 +174862,7 @@ Machine Learning for druggable protein classifiers.""" ;
     biotools:primaryContact "j. Saez-Rodriguez" .
 
 <https://bio.tools/druidom> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0154,
@@ -177477,8 +174884,30 @@ Machine Learning for druggable protein classifiers.""" ;
         "Windows" ;
     sc:url "https://github.com/cansyl/DRUIDom" .
 
+<https://bio.tools/drummer> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0099,
+        edam:topic_3170,
+        edam:topic_3308,
+        edam:topic_3676 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC274>,
+        "pmcid:PMC9154255",
+        "pubmed:35426900" ;
+    sc:description "DRUMMER is designed to identify RNA modifications at nucleotide-level resolution on distinct transcript isoforms through the comparative analysis of basecall errors in Nanopore direct RNA sequencing (DRS) datasets." ;
+    sc:featureList edam:operation_0264,
+        edam:operation_1812,
+        edam:operation_3185 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "DRUMMER" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/DepledgeLab/DRUMMER" .
+
 <https://bio.tools/drvm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0622,
@@ -177497,7 +174926,7 @@ Machine Learning for druggable protein classifiers.""" ;
         "Yu-Chieh Liao" .
 
 <https://bio.tools/dryclean> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_2640,
@@ -177524,7 +174953,7 @@ dryclean is a robust principal component analysis (rPCA) based method. dryclean
     sc:url "https://github.com/mskilab/dryclean" .
 
 <https://bio.tools/drygin> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0602,
@@ -177543,7 +174972,7 @@ dryclean is a robust principal component analysis (rPCA) based method. dryclean
     biotools:primaryContact "Charlie Boone" .
 
 <https://bio.tools/drymass> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_2229,
@@ -177560,8 +174989,26 @@ dryclean is a robust principal component analysis (rPCA) based method. dryclean
     sc:softwareHelp <https://drymass.readthedocs.io> ;
     sc:url "https://github.com/RI-imaging/DryMass" .
 
+<https://bio.tools/ds-ui> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_2269,
+        edam:topic_3382 ;
+    sc:citation <https://doi.org/10.1109/TIP.2021.3123555>,
+        "pubmed:34739376" ;
+    sc:description "Dual-Supervised Mixture of Gaussian Mixture Models for Uncertainty Inference in Image Recognition" ;
+    sc:featureList edam:operation_0337,
+        edam:operation_0479 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "DS-UI" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/PRIS-CV/DS-UI" .
+
 <https://bio.tools/dsaas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3421,
@@ -177576,7 +175023,7 @@ dryclean is a robust principal component analysis (rPCA) based method. dryclean
     sc:url "https://dsaas-demo.shinyapps.io/Server/" .
 
 <https://bio.tools/dsap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_3308 ;
@@ -177591,7 +175038,7 @@ dryclean is a robust principal component analysis (rPCA) based method. dryclean
     sc:url "http://dsap.cgu.edu.tw" .
 
 <https://bio.tools/dsb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_2229,
@@ -177610,7 +175057,7 @@ normalizing and denoising protein expression data from droplet-based single cell
     sc:url "https://cran.r-project.org/package=dsb" .
 
 <https://bio.tools/dsbs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_2885,
@@ -177631,8 +175078,27 @@ DSBS analyzer is a pipeline to analyzing Double Strand Bisulfite Sequencing data
         "Windows" ;
     sc:url "https://github.com/tianguolangzi/DSBS" .
 
+<https://bio.tools/dscellnet> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0634,
+        edam:topic_2229,
+        edam:topic_3170,
+        edam:topic_3304,
+        edam:topic_3957 ;
+    sc:citation <https://doi.org/10.1016/J.CSBJ.2022.07.047>,
+        "pmcid:PMC9364093",
+        "pubmed:35983234" ;
+    sc:description "A computational tool to infer cell-cell communication networks in the developing and aging brain." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_3432,
+        edam:operation_3925 ;
+    sc:license "Not licensed" ;
+    sc:name "dsCellNet" ;
+    sc:url "https://github.com/songzh523/dsCellNet" .
+
 <https://bio.tools/dscheck> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0659,
@@ -177651,7 +175117,7 @@ DSBS analyzer is a pipeline to analyzing Double Strand Bisulfite Sequencing data
     sc:url "http://dscheck.rnai.jp/" .
 
 <https://bio.tools/dscmf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_0659,
@@ -177668,8 +175134,23 @@ DSBS analyzer is a pipeline to analyzing Double Strand Bisulfite Sequencing data
     sc:url "https://github.com/Ming-0113/DSCMF" ;
     biotools:primaryContact "Ying-Lian Gao" .
 
+<https://bio.tools/dscn> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0128,
+        edam:topic_0154,
+        edam:topic_0634,
+        edam:topic_2640 ;
+    sc:citation <https://doi.org/10.1371/JOURNAL.PCBI.1009421>,
+        "pubmed:35984840" ;
+    sc:description "DSCN (double-target selection guided by CRISPR screening and network), a method that matches expression levels in patients and gene essentialities in cell lines through spectral-clustered protein-protein interaction (PPI) network." ;
+    sc:featureList edam:operation_3463 ;
+    sc:license "Not licensed" ;
+    sc:name "DSCN" ;
+    sc:url "https://github.com/tzcoolman/DSCN" .
+
 <https://bio.tools/dscope> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -177685,7 +175166,7 @@ DSBS analyzer is a pipeline to analyzing Double Strand Bisulfite Sequencing data
     sc:url "http://dscope.omicsbio.info" .
 
 <https://bio.tools/dscoreapp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3382 ;
@@ -177699,22 +175180,53 @@ DSBS analyzer is a pipeline to analyzing Double Strand Bisulfite Sequencing data
     sc:name "DscoreApp" ;
     sc:url "https://github.com/OttaviaE/DscoreApp" .
 
-<https://bio.tools/dsdbstart> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0203,
-        edam:topic_0625,
-        edam:topic_3174 ;
-    sc:citation <https://doi.org/10.1038/S41598-019-47226-0>,
-        "pmcid:PMC6668405",
-        "pubmed:31366898" ;
-    sc:description "> LOW CONFIDENCE! | > CORRECT NAME OF TOOL COULD ALSO BE 'stressor', 'Daphnia', 'Daphnia stressor database' | Taking advantage of a decade of Daphnia '-omics' data for gene annotation | Welcome to the Daphnia Stressor database" ;
-    sc:featureList edam:operation_2495,
+<https://bio.tools/dsdatlas> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0199,
+        edam:topic_0622,
+        edam:topic_0634,
+        edam:topic_3407,
+        edam:topic_3420 ;
+    sc:citation <https://doi.org/10.1016/J.XFSS.2022.02.007>,
+        "pubmed:35560008" ;
+    sc:description "A disorders of sex development atlas for reproductive endocrinology-related gene discovery in integrative omics platforms." ;
+    sc:featureList edam:operation_0571,
         edam:operation_3223,
-        edam:operation_3501 ;
-    sc:name "dsdbstart" ;
-    sc:url "http://www.daphnia-stressordb.uni-hamburg.de/dsdbstart.php" .
+        edam:operation_3431 ;
+    sc:license "Not licensed" ;
+    sc:name "DSDatlas" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://dsd.geneworks.cn" .
+
+<https://bio.tools/dsdbase> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0623,
+        edam:topic_0632,
+        edam:topic_0736,
+        edam:topic_3542 ;
+    sc:citation <https://doi.org/10.1093/DATABASE/BAAC005>,
+        "pubmed:35230424" ;
+    sc:description "DSDBASE is a database on disulphide bonds in proteins that provides information on native disulphides and those which are stereochemically possible between pairs of residues in a protein." ;
+    sc:featureList edam:operation_0224,
+        edam:operation_0479,
+        edam:operation_0481,
+        edam:operation_1850 ;
+    sc:isAccessibleForFree true ;
+    sc:name "DSDBASE" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareVersion "2.0" ;
+    sc:url "http://caps.ncbs.res.in/dsdbase2" .
 
 <https://bio.tools/dsfworld> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0130,
         edam:topic_0632,
@@ -177725,8 +175237,27 @@ DSBS analyzer is a pipeline to analyzing Double Strand Bisulfite Sequencing data
     sc:name "DSFworld" ;
     sc:url "https://gestwickilab.shinyapps.io/dsfworld/" .
 
+<https://bio.tools/dsgat> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workbench" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_3336,
+        edam:topic_3375 ;
+    sc:citation <https://doi.org/10.1093/BIB/BBAB586>,
+        "pubmed:35043189" ;
+    sc:description "A tool for predicting frequencies of drug side effects by graph attention networks." ;
+    sc:featureList edam:operation_2940,
+        edam:operation_3927 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "DSGAT" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/xxy45/DSGAT" .
+
 <https://bio.tools/dsgseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3170,
@@ -177743,7 +175274,7 @@ DSBS analyzer is a pipeline to analyzing Double Strand Bisulfite Sequencing data
     biotools:primaryContact "Zhiyi Qin" .
 
 <https://bio.tools/dshift> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0593,
@@ -177764,7 +175295,7 @@ DSBS analyzer is a pipeline to analyzing Double Strand Bisulfite Sequencing data
     biotools:primaryContact "Sik Lok LAM" .
 
 <https://bio.tools/dsimer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0634 ;
@@ -177784,14 +175315,13 @@ DSBS analyzer is a pipeline to analyzing Double Strand Bisulfite Sequencing data
 
 <https://bio.tools/dsk> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2975" ;
-            sc:name "Nucleic acid sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_2975" ] ;
+            sc:additionalType "http://edamontology.org/data_2975" ;
+            sc:encodingFormat "http://edamontology.org/format_2182" ;
+            sc:name "Nucleic acid sequence (raw)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1261" ;
-            sc:name "Sequence composition report" ;
-            sc:sameAs "http://edamontology.org/data_1261" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1261" ;
+            sc:name "Sequence composition report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btt020> ;
@@ -177810,7 +175340,7 @@ DSBS analyzer is a pipeline to analyzing Double Strand Bisulfite Sequencing data
         "Rayan Chikhi" .
 
 <https://bio.tools/dsm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3168,
         edam:topic_3174 ;
@@ -177826,7 +175356,7 @@ DSBS analyzer is a pipeline to analyzing Double Strand Bisulfite Sequencing data
     sc:url "https://github.com/HIITMetagenomics/dsm-framework" .
 
 <https://bio.tools/dsp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -177844,7 +175374,7 @@ DSBS analyzer is a pipeline to analyzing Double Strand Bisulfite Sequencing data
     sc:url "http://cheminfo.tongji.edu.cn/dsp/" .
 
 <https://bio.tools/dsplmf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0202,
@@ -177862,7 +175392,7 @@ DSBS analyzer is a pipeline to analyzing Double Strand Bisulfite Sequencing data
     sc:url "https://github.com/emdadi/DSPLMF" .
 
 <https://bio.tools/dsprint> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Workbench" ;
     sc:applicationSubCategory edam:topic_0099,
@@ -177880,8 +175410,32 @@ DSBS analyzer is a pipeline to analyzing Double Strand Bisulfite Sequencing data
     sc:url "http://protdomain.princeton.edu/dsprint" ;
     biotools:primaryContact <https://orcid.org/0000-0001-8271-6026> .
 
+<https://bio.tools/dsrbpbind> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0097,
+        edam:topic_0659,
+        edam:topic_3320,
+        edam:topic_3512,
+        edam:topic_3542 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAB724>,
+        "pubmed:34668517" ;
+    sc:description "Modeling the effect of RNA secondary structure on double stranded RNA-protein binding." ;
+    sc:featureList edam:operation_0278,
+        edam:operation_0502,
+        edam:operation_2488,
+        edam:operation_3799,
+        edam:operation_3901 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "dsRBPBind" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://bioserv.mps.ohio-state.edu/dsRBPBind" .
+
 <https://bio.tools/dsrc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation "pubmed:21252073" ;
@@ -177895,7 +175449,7 @@ DSBS analyzer is a pipeline to analyzing Double Strand Bisulfite Sequencing data
     biotools:primaryContact "Sebastian Deorowicz" .
 
 <https://bio.tools/dsressol> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0154,
@@ -177913,7 +175467,7 @@ DSBS analyzer is a pipeline to analyzing Double Strand Bisulfite Sequencing data
     sc:url "https://github.com/mahan-fcb/DSResSol" .
 
 <https://bio.tools/dss> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3168,
@@ -177935,14 +175489,14 @@ DSBS analyzer is a pipeline to analyzing Double Strand Bisulfite Sequencing data
 
 <https://bio.tools/dssp> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ] ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1477" ;
+            sc:name "Protein structure" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:encodingFormat "http://edamontology.org/format_1454" ;
+            sc:name "Protein features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_3542 ;
@@ -177962,7 +175516,7 @@ DSBS analyzer is a pipeline to analyzing Double Strand Bisulfite Sequencing data
     sc:url "http://swift.cmbi.ru.nl/gv/dssp/" .
 
 <https://bio.tools/dsspcont> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -177984,7 +175538,7 @@ DSBS analyzer is a pipeline to analyzing Double Strand Bisulfite Sequencing data
     biotools:primaryContact "Carter P." .
 
 <https://bio.tools/dssr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0099,
@@ -178004,8 +175558,31 @@ DSBS analyzer is a pipeline to analyzing Double Strand Bisulfite Sequencing data
     sc:url "http://x3dna.org/" ;
     biotools:primaryContact "Xiang-Jun Lu" .
 
+<https://bio.tools/dssurvival> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0769,
+        edam:topic_3263,
+        edam:topic_3303 ;
+    sc:citation <https://doi.org/10.1186/s13104-022-06085-1>,
+        "pmcid:PMC9166323",
+        "pubmed:35659747" ;
+    sc:description "Privacy preserving survival models for federated individual patient meta-analysis in DataSHIELD." ;
+    sc:featureList edam:operation_3283,
+        edam:operation_3436,
+        edam:operation_3503,
+        edam:operation_3659 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "dsSurvival" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://neelsoumya.github.io/dsSurvivalbookdown/> ;
+    sc:url "https://github.com/neelsoumya/dsSurvival/" .
+
 <https://bio.tools/dsswissknife> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3360 ;
     sc:citation <https://doi.org/10.1101/2020.11.17.386813> ;
@@ -178018,7 +175595,7 @@ DSBS analyzer is a pipeline to analyzing Double Strand Bisulfite Sequencing data
     sc:url "https://github.com/sib-swiss/dsSwissKnife" .
 
 <https://bio.tools/dstabilize> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0632,
@@ -178031,7 +175608,7 @@ DSBS analyzer is a pipeline to analyzing Double Strand Bisulfite Sequencing data
     sc:url "http://dstabilize.bii.a-star.edu.sg/" .
 
 <https://bio.tools/dstg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2229,
@@ -178048,13 +175625,13 @@ DSBS analyzer is a pipeline to analyzing Double Strand Bisulfite Sequencing data
     sc:url "https://github.com/Su-informatics-lab/DSTG" .
 
 <https://bio.tools/dsysmap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "Considering pathological genetic variants within the context of the human interactome network can help understanding the intricate genotype-to-phenotype relationships behind human diseases. It allows, for instance, to distinguish between changes that totally suppress a gene product (i.e. node removal) from the ones that might affect only one of its functions, modulating the way in which the protein interacts with its partners (i.e. edge-specific or edgetic1). dSysMap is a resource for the systematic mapping of disease-related missense mutations on the structurally annotated binary human interactome from Interactome3D." ;
     sc:name "dSysMap" ;
     sc:url "http://dsysmap.irbbarcelona.org" .
 
 <https://bio.tools/dta> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3308 ;
@@ -178073,14 +175650,14 @@ DSBS analyzer is a pipeline to analyzing Double Strand Bisulfite Sequencing data
 
 <https://bio.tools/dta_to_mgf_file_converter> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Mass spectrometry spectra" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3651" ;
+            sc:name "Mass spectrometry spectra" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -178092,7 +175669,7 @@ DSBS analyzer is a pipeline to analyzing Double Strand Bisulfite Sequencing data
     sc:url "http://omics.pnl.gov/software/concatenated-dta-mascot-generic-file-mgf-file-converter" .
 
 <https://bio.tools/dtc-qsar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0209,
         edam:topic_2258,
         edam:topic_2840 ;
@@ -178103,7 +175680,7 @@ DSBS analyzer is a pipeline to analyzing Double Strand Bisulfite Sequencing data
     sc:url "https://dtclab.webs.com/software-tools" .
 
 <https://bio.tools/dtf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_3298,
         edam:topic_3336,
@@ -178119,7 +175696,7 @@ DSBS analyzer is a pipeline to analyzing Double Strand Bisulfite Sequencing data
     sc:url "https://github.com/ZexuanSun/DTF-Drug-Synergy" .
 
 <https://bio.tools/dtflow> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_2269,
@@ -178134,7 +175711,7 @@ DSBS analyzer is a pipeline to analyzing Double Strand Bisulfite Sequencing data
     sc:url "https://github.com/statway/DTFLOW" .
 
 <https://bio.tools/dti-mlcd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3336,
@@ -178149,7 +175726,7 @@ DSBS analyzer is a pipeline to analyzing Double Strand Bisulfite Sequencing data
     sc:url "https://github.com/a96123155/DTI-MLCD" .
 
 <https://bio.tools/dti-voodoo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0154,
@@ -178167,8 +175744,26 @@ DSBS analyzer is a pipeline to analyzing Double Strand Bisulfite Sequencing data
     sc:url "https://github.com/THinnerichs/DTI-VOODOO" ;
     biotools:primaryContact <https://orcid.org/0000-0003-4155-0239> .
 
+<https://bio.tools/dtitr> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0202,
+        edam:topic_3336,
+        edam:topic_3373 ;
+    sc:citation <https://doi.org/10.1016/J.COMPBIOMED.2022.105772>,
+        "pubmed:35777085" ;
+    sc:description "End-to-end drug-target binding affinity prediction with transformers." ;
+    sc:featureList edam:operation_2428,
+        edam:operation_2492,
+        edam:operation_3436,
+        edam:operation_3938 ;
+    sc:license "Not licensed" ;
+    sc:name "DTITR" ;
+    sc:url "https://github.com/larngroup/DTITR" .
+
 <https://bio.tools/dtmm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_2275 ;
     sc:description "Desktop Molecular Modeller (DTMM) Version 4.2 is a simple-to-use molecular modelling program that enables you to perform powerful molecular synthesis, editing, energy minimizations, and display." ;
@@ -178180,7 +175775,7 @@ DSBS analyzer is a pipeline to analyzing Double Strand Bisulfite Sequencing data
     sc:url "http://www.polyhedron.com/dtmm-dtmm0html" .
 
 <https://bio.tools/dtoolai> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3474,
@@ -178198,7 +175793,7 @@ DSBS analyzer is a pipeline to analyzing Double Strand Bisulfite Sequencing data
     sc:url "https://github.com/jic-csb/dtoolai" .
 
 <https://bio.tools/dtranner> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0218,
         edam:topic_3473,
@@ -178212,7 +175807,7 @@ DSBS analyzer is a pipeline to analyzing Double Strand Bisulfite Sequencing data
     sc:url "https://github.com/kaist-dmlab/BioNER" .
 
 <https://bio.tools/dtsr-fmri-reconstruction> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3304,
@@ -178232,7 +175827,7 @@ DSBS analyzer is a pipeline to analyzing Double Strand Bisulfite Sequencing data
     biotools:primaryContact "Priya Aggarwal" .
 
 <https://bio.tools/dtu-dads-aqua> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0621,
@@ -178252,8 +175847,50 @@ DSBS analyzer is a pipeline to analyzing Double Strand Bisulfite Sequencing data
         "Windows" ;
     sc:url "https://github.com/upei-aqua/DTU-DADS-Aqua" .
 
+<https://bio.tools/dual-use_quickscan> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0621,
+        edam:topic_3297,
+        edam:topic_3301,
+        edam:topic_3810 ;
+    sc:citation <https://doi.org/10.3389/FBIOE.2021.797076>,
+        "pmcid:PMC8696162",
+        "pubmed:34957083" ;
+    sc:description "A web-based tool to assess the dual-use potential of life science research. The aim of the tool is to provide a clear and practical dual-use risk assessment of research concerned and to create dual-use awareness amongst life-science researchers, as explicitly stated in the WHO Benchmarks for International Health Regulations Capacities." ;
+    sc:featureList edam:operation_3283 ;
+    sc:isAccessibleForFree true ;
+    sc:name "Dual-Use Quickscan" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://www.dualusequickscan.com" .
+
+<https://bio.tools/dualgcn> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Desktop application" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0202,
+        edam:topic_0209,
+        edam:topic_2640,
+        edam:topic_3577 ;
+    sc:citation <https://doi.org/10.1186/S12859-022-04664-4>,
+        "pmcid:PMC9011932",
+        "pubmed:35428192" ;
+    sc:description "A dual graph convolutional network model to predict cancer drug response. It takes chemical structure information of a drug and gene features of a cancer sample as inputs and outputs IC50." ;
+    sc:featureList edam:operation_1812,
+        edam:operation_3891,
+        edam:operation_3927,
+        edam:operation_4009 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "DualGCN" ;
+    sc:operatingSystem "Linux",
+        "Mac" ;
+    sc:url "https://github.com/horsedayday/DualGCN" .
+
 <https://bio.tools/dualks> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3474 ;
@@ -178272,7 +175909,7 @@ DSBS analyzer is a pipeline to analyzing Double Strand Bisulfite Sequencing data
         "Yarong Yang" .
 
 <https://bio.tools/dualmarker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Suite" ;
     sc:applicationSubCategory edam:topic_0199,
@@ -178292,7 +175929,7 @@ DSBS analyzer is a pipeline to analyzing Double Strand Bisulfite Sequencing data
     biotools:primaryContact "Xiaopeng Ma" .
 
 <https://bio.tools/dualseqdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3047,
@@ -178309,7 +175946,7 @@ DSBS analyzer is a pipeline to analyzing Double Strand Bisulfite Sequencing data
     sc:url "http://www.tartaglialab.com/dualseq" .
 
 <https://bio.tools/dualvd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_3382 ;
     sc:citation <https://doi.org/10.1109/TIP.2020.3034494>,
@@ -178321,7 +175958,7 @@ DSBS analyzer is a pipeline to analyzing Double Strand Bisulfite Sequencing data
     sc:url "https://github.com/JXZe/Learning_DualVD" .
 
 <https://bio.tools/ductape> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0085,
         edam:topic_2259,
@@ -178342,7 +175979,7 @@ DSBS analyzer is a pipeline to analyzing Double Strand Bisulfite Sequencing data
     biotools:primaryContact "Marco Galardini" .
 
 <https://bio.tools/duet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0130,
@@ -178356,7 +175993,7 @@ DSBS analyzer is a pipeline to analyzing Double Strand Bisulfite Sequencing data
     biotools:primaryContact "Dr. Douglas E. V. Pires" .
 
 <https://bio.tools/dug> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0218,
@@ -178376,7 +176013,7 @@ DSBS analyzer is a pipeline to analyzing Double Strand Bisulfite Sequencing data
     sc:url "https://github.com/helxplatform/dug" .
 
 <https://bio.tools/dui> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0637,
         edam:topic_3305,
@@ -178391,8 +176028,29 @@ DSBS analyzer is a pipeline to analyzing Double Strand Bisulfite Sequencing data
         "Windows" ;
     sc:url "http://haddock9.sfsu.edu/insight/" .
 
+<https://bio.tools/duloc> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0140,
+        edam:topic_2229,
+        edam:topic_3382,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAB730>,
+        "pubmed:34694372" ;
+    sc:description "This is a deep-learning-based pattern unmixing pipeline for protein subcellular localization to quantitatively estimate the fractions of proteins localizing in different subcellular compartments from immunofluorescence images." ;
+    sc:featureList edam:operation_2489,
+        edam:operation_3553,
+        edam:operation_3630 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "DULoc" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/PRBioimages/DULoc" .
+
 <https://bio.tools/dune> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3304,
@@ -178404,7 +176062,7 @@ DSBS analyzer is a pipeline to analyzing Double Strand Bisulfite Sequencing data
     sc:url "https://github.com/HectorRDB/Dune" .
 
 <https://bio.tools/dunescan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3382,
@@ -178419,7 +176077,7 @@ DSBS analyzer is a pipeline to analyzing Double Strand Bisulfite Sequencing data
     sc:url "https://www.dunescan.org" .
 
 <https://bio.tools/duneuro> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3304,
@@ -178440,7 +176098,7 @@ DSBS analyzer is a pipeline to analyzing Double Strand Bisulfite Sequencing data
     sc:url "https://gitlab.dune-project.org/duneuro" .
 
 <https://bio.tools/dupchecker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0622,
@@ -178461,7 +176119,7 @@ DSBS analyzer is a pipeline to analyzing Double Strand Bisulfite Sequencing data
     biotools:primaryContact "\"Quanhu SHENG\"" .
 
 <https://bio.tools/duphmm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0199 ;
@@ -178475,7 +176133,7 @@ DSBS analyzer is a pipeline to analyzing Double Strand Bisulfite Sequencing data
     sc:url "https://github.com/KorfLab/DupHMM/wiki" .
 
 <https://bio.tools/dupradar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3170 ;
@@ -178495,7 +176153,7 @@ DSBS analyzer is a pipeline to analyzing Double Strand Bisulfite Sequencing data
         <http://orcid.org/0000-0002-6904-2319> .
 
 <https://bio.tools/dupre> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3168,
@@ -178508,8 +176166,28 @@ DSBS analyzer is a pipeline to analyzing Double Strand Bisulfite Sequencing data
     sc:name "Dupre" ;
     sc:url "http://bitbucket.org/genomeinformatics/dupre" .
 
+<https://bio.tools/dupscan> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_0621,
+        edam:topic_0622,
+        edam:topic_3299 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAC718>,
+        "pubmed:36018807" ;
+    sc:description "DupScan is a database for visualizing and predicting vertebrate synteny and genome duplication." ;
+    sc:featureList edam:operation_3208 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "DupScan" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://dupscan.sysumeg.com/" .
+
 <https://bio.tools/dv-trio> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0769,
@@ -178525,7 +176203,7 @@ DSBS analyzer is a pipeline to analyzing Double Strand Bisulfite Sequencing data
     sc:url "https://github.com/VCCRI/dv-trio/" .
 
 <https://bio.tools/dvd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_3325,
@@ -178546,7 +176224,7 @@ DSBS analyzer is a pipeline to analyzing Double Strand Bisulfite Sequencing data
     biotools:primaryContact "DVD Support" .
 
 <https://bio.tools/dvdeconv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Suite" ;
     sc:applicationSubCategory edam:topic_3303,
@@ -178564,7 +176242,7 @@ DSBS analyzer is a pipeline to analyzing Double Strand Bisulfite Sequencing data
     biotools:primaryContact "Boyoung Kim" .
 
 <https://bio.tools/dxm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0654,
@@ -178587,7 +176265,7 @@ DXM performs a local deconvolution of DNA methylation data for one or more regio
     sc:url "https://github.com/edwardslab-wustl/dxm" .
 
 <https://bio.tools/dxr-interact-profile> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0166,
@@ -178604,7 +176282,7 @@ DXM performs a local deconvolution of DNA methylation data for one or more regio
     sc:url "http://www.moreiralab.com/resources/dxr" .
 
 <https://bio.tools/dyconnmap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0602,
@@ -178627,7 +176305,7 @@ DXM performs a local deconvolution of DNA methylation data for one or more regio
     sc:url "https://github.com/makism/dyconnmap" .
 
 <https://bio.tools/dyebias> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3518 ;
@@ -178647,7 +176325,7 @@ DXM performs a local deconvolution of DNA methylation data for one or more regio
     biotools:primaryContact "Philip Lijnzaad" .
 
 <https://bio.tools/dyedb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_2258,
         edam:topic_3314,
@@ -178665,7 +176343,7 @@ DXM performs a local deconvolution of DNA methylation data for one or more regio
     biotools:primaryContact "Vishwesh Venkatraman" .
 
 <https://bio.tools/dynamic-nomogram-asthma> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3071,
@@ -178684,8 +176362,54 @@ DXM performs a local deconvolution of DNA methylation data for one or more regio
         "Windows" ;
     sc:url "https://yanglifen.shinyapps.io/Dynamic_Nomogram_for_Asthma/" .
 
+<https://bio.tools/dynamic_codon_biaser> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0196,
+        edam:topic_0199,
+        edam:topic_0203,
+        edam:topic_0621 ;
+    sc:citation <https://doi.org/10.1099/MGEN.0.000663>,
+        "pmcid:PMC8627211",
+        "pubmed:34699346" ;
+    sc:description "A web application for dynamically calculating the codon usage bias in bacterial genomes." ;
+    sc:featureList edam:operation_0284,
+        edam:operation_0285,
+        edam:operation_0489,
+        edam:operation_2962,
+        edam:operation_2964 ;
+    sc:isAccessibleForFree true ;
+    sc:license "BSD-3-Clause" ;
+    sc:name "Dynamic Codon Biaser" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://www.cbdb.info" .
+
+<https://bio.tools/dynamic_nomogram> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_2640,
+        edam:topic_3305,
+        edam:topic_3399,
+        edam:topic_3421 ;
+    sc:citation <https://doi.org/10.3389/FPUBH.2022.901680>,
+        "pmcid:PMC9279667",
+        "pubmed:35844853" ;
+    sc:description "A web-based nomogram for accurately predicting probabilities of overall survival in elderly patients with chondrosarcoma (CHS), which will contribute to personalized survival assessment and clinical management." ;
+    sc:featureList edam:operation_2428,
+        edam:operation_3503,
+        edam:operation_3659 ;
+    sc:license "Not licensed" ;
+    sc:name "Dynamic Nomogram" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://nomoresearch.shinyapps.io/elderlywithCHS/" .
+
 <https://bio.tools/dynamicproteomics_db> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0176,
@@ -178707,14 +176431,13 @@ DXM performs a local deconvolution of DNA methylation data for one or more regio
 
 <https://bio.tools/dynamine> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2974" ;
-            sc:name "Protein sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_2974" ] ;
+            sc:additionalType "http://edamontology.org/data_2974" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence (raw)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:name "Protein features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0123,
@@ -178735,7 +176458,7 @@ DXM performs a local deconvolution of DNA methylation data for one or more regio
     biotools:primaryContact "Wim Vranken" .
 
 <https://bio.tools/dynamite> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_3305,
@@ -178750,8 +176473,31 @@ DXM performs a local deconvolution of DNA methylation data for one or more regio
     sc:name "DYNAMITE" ;
     sc:url "http://github.com/ProsperiLab/DYNAMITE" .
 
+<https://bio.tools/dynamovis> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0092,
+        edam:topic_0610,
+        edam:topic_0749,
+        edam:topic_3382,
+        edam:topic_3500 ;
+    sc:citation <https://doi.org/10.1186/S40462-021-00291-5>,
+        "pmcid:PMC8567714",
+        "pubmed:34736518" ;
+    sc:description "An exploratory data visualization software for mapping movement in relation to internal and external factors." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_2429,
+        edam:operation_3431 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "DynamoVis" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://www.github.com/move-ucsb/DynamoVis" .
+
 <https://bio.tools/dynamut> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0130,
         edam:topic_0176,
@@ -178772,7 +176518,7 @@ DXM performs a local deconvolution of DNA methylation data for one or more regio
         "Dr. Douglas E. V. Pires" .
 
 <https://bio.tools/dynapho> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0821,
@@ -178790,7 +176536,7 @@ DXM performs a local deconvolution of DNA methylation data for one or more regio
         "Hsueh-Fen Juan" .
 
 <https://bio.tools/dynavacs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0108,
@@ -178807,7 +176553,7 @@ DXM performs a local deconvolution of DNA methylation data for one or more regio
     sc:url "http://miracle.igib.res.in/dynavac/" .
 
 <https://bio.tools/dynavenn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_3169,
@@ -178825,7 +176571,7 @@ DXM performs a local deconvolution of DNA methylation data for one or more regio
     sc:url "http://www.ccb.uni-saarland.de/dynavenn" .
 
 <https://bio.tools/dynbgp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2269,
@@ -178843,7 +176589,7 @@ DXM performs a local deconvolution of DNA methylation data for one or more regio
     biotools:primaryContact <https://orcid.org/0000-0003-2808-2768> .
 
 <https://bio.tools/dyndoc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0219 ;
@@ -178861,7 +176607,7 @@ DXM performs a local deconvolution of DNA methylation data for one or more regio
     biotools:primaryContact "BioConductor Package Maintainer" .
 
 <https://bio.tools/dynlib> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0593,
         edam:topic_0602,
@@ -178881,7 +176627,7 @@ DXM performs a local deconvolution of DNA methylation data for one or more regio
         <https://orcid.org/0000-0003-1495-510X> .
 
 <https://bio.tools/dynomics_emn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0176,
         edam:topic_0602 ;
@@ -178900,7 +176646,7 @@ DXM performs a local deconvolution of DNA methylation data for one or more regio
     biotools:primaryContact "Hongchun Li" .
 
 <https://bio.tools/dynr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3300,
         edam:topic_3360,
@@ -178916,7 +176662,7 @@ DXM performs a local deconvolution of DNA methylation data for one or more regio
     sc:url "https://rdrr.io/cran/dynr/man/dynr.mi.html" .
 
 <https://bio.tools/dynugene> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -178930,7 +176676,7 @@ DXM performs a local deconvolution of DNA methylation data for one or more regio
     sc:url "https://tianyulu.shinyapps.io/dynUGENE/" .
 
 <https://bio.tools/dyspia> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0204,
@@ -178953,7 +176699,7 @@ DXM performs a local deconvolution of DNA methylation data for one or more regio
     sc:url "https://github.com/lemonwang2020/DysPIA" .
 
 <https://bio.tools/dysregsig> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2640,
@@ -178969,7 +176715,7 @@ DXM performs a local deconvolution of DNA methylation data for one or more regio
     sc:url "https://github.com/SCBIT-YYLab/DysRegSig" .
 
 <https://bio.tools/e-Driver> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0128,
@@ -178995,7 +176741,7 @@ DXM performs a local deconvolution of DNA methylation data for one or more regio
     biotools:primaryContact <https://orcid.org/0000-0001-7900-4239> .
 
 <https://bio.tools/e-covig> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0202,
         edam:topic_0634 ;
@@ -179010,14 +176756,12 @@ DXM performs a local deconvolution of DNA methylation data for one or more regio
 
 <https://bio.tools/e-crisp> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3497" ;
-            sc:name "DNA sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_3497" ],
+            sc:additionalType "http://edamontology.org/data_1025" ;
+            sc:name "Gene identifier" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1025" ;
-            sc:name "Gene identifier" ;
-            sc:sameAs "http://edamontology.org/data_1025" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3497" ;
+            sc:name "DNA sequence (raw)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3307 ;
     sc:citation <https://doi.org/10.1038/nmeth.2812>,
@@ -179033,7 +176777,7 @@ DXM performs a local deconvolution of DNA methylation data for one or more regio
     sc:url "http://www.e-crisp.org" .
 
 <https://bio.tools/e-gp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0199,
@@ -179053,7 +176797,7 @@ DXM performs a local deconvolution of DNA methylation data for one or more regio
     sc:url "https://github.com/gcostaneto/EGP" .
 
 <https://bio.tools/e-hir-gan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3382,
@@ -179071,7 +176815,7 @@ Objectives:Human motion analysis can be applied to the diagnosis of musculoskele
     sc:url "https://github.com/isn350/e_hir_GAN" .
 
 <https://bio.tools/e-lea3d> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0209,
         edam:topic_3336 ;
@@ -179087,7 +176831,7 @@ Objectives:Human motion analysis can be applied to the diagnosis of musculoskele
     biotools:primaryContact "Dominique Douguet" .
 
 <https://bio.tools/e-magma> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0625,
@@ -179102,7 +176846,7 @@ Objectives:Human motion analysis can be applied to the diagnosis of musculoskele
     sc:url "https://github.com/eskederks/eMAGMA-tutorial" .
 
 <https://bio.tools/e-mutpath> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0203,
         edam:topic_0602,
@@ -179119,7 +176863,7 @@ Objectives:Human motion analysis can be applied to the diagnosis of musculoskele
     sc:url "https://github.com/lyshaerbin/eMutPath" .
 
 <https://bio.tools/e-pedigrees> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3263,
@@ -179136,7 +176880,7 @@ Objectives:Human motion analysis can be applied to the diagnosis of musculoskele
         "Scott J Hebbring" .
 
 <https://bio.tools/e-pix> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3263,
@@ -179154,7 +176898,7 @@ Objectives:Human motion analysis can be applied to the diagnosis of musculoskele
     sc:url "https://github.com/mosaic-hgw/E-PIX" .
 
 <https://bio.tools/e-predict> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3277 ;
     sc:citation <https://doi.org/10.1186/gb-2005-6-9-r78> ;
@@ -179167,7 +176911,7 @@ Objectives:Human motion analysis can be applied to the diagnosis of musculoskele
     sc:url "http://derisilab.ucsf.edu/software/epredict/index.html" .
 
 <https://bio.tools/e-rna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0092,
@@ -179190,7 +176934,7 @@ Objectives:Human motion analysis can be applied to the diagnosis of musculoskele
     biotools:primaryContact "e-RNA Support" .
 
 <https://bio.tools/e-rnai> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0659,
@@ -179210,7 +176954,7 @@ Objectives:Human motion analysis can be applied to the diagnosis of musculoskele
     biotools:primaryContact "E-RNAi Support" .
 
 <https://bio.tools/e-scape> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_2640 ;
@@ -179228,7 +176972,7 @@ Objectives:Human motion analysis can be applied to the diagnosis of musculoskele
     biotools:primaryContact "Maia Smith" .
 
 <https://bio.tools/e-talen> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0622,
@@ -179246,8 +176990,32 @@ Objectives:Human motion analysis can be applied to the diagnosis of musculoskele
     sc:url "http://www.e-talen.org/E-TALEN/" ;
     biotools:primaryContact "Support" .
 
+<https://bio.tools/e-volve> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_0128,
+        edam:topic_0199,
+        edam:topic_3120,
+        edam:topic_3305 ;
+    sc:citation <https://doi.org/10.7717/PEERJ.13099>,
+        "pmcid:PMC8953562",
+        "pubmed:35341044" ;
+    sc:description "Evolve is a Webtool designed to model mutations in the input protein complex using Modeller." ;
+    sc:featureList edam:operation_0244,
+        edam:operation_0331,
+        edam:operation_0478,
+        edam:operation_0480,
+        edam:operation_3227 ;
+    sc:license "Not licensed" ;
+    sc:name "E-Volve" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://bioinfo.dcc.ufmg.br/evolve" .
+
 <https://bio.tools/e1ds> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0160,
@@ -179269,7 +177037,7 @@ Objectives:Human motion analysis can be applied to the diagnosis of musculoskele
     biotools:primaryContact "E1DS Support" .
 
 <https://bio.tools/e2edna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0166,
         edam:topic_0176,
@@ -179291,7 +177059,7 @@ Objectives:Human motion analysis can be applied to the diagnosis of musculoskele
     sc:url "https://github.com/InfluenceFunctional/E2EDNA" .
 
 <https://bio.tools/e2g> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0102,
@@ -179313,7 +177081,7 @@ Objectives:Human motion analysis can be applied to the diagnosis of musculoskele
         "Jan Krüger" .
 
 <https://bio.tools/e3miner> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0218,
@@ -179324,26 +177092,8 @@ Objectives:Human motion analysis can be applied to the diagnosis of musculoskele
     sc:name "E3Miner" ;
     sc:url "http://e3miner.biopathway.org" .
 
-<https://bio.tools/eBird> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0610,
-        edam:topic_0780,
-        edam:topic_3474 ;
-    sc:citation <https://doi.org/10.1101/806547> ;
-    sc:description """Integrating citizen science data with expert surveys increases accuracy and spatial extent of species distribution models.
-
-Bird Academy, Birds of North America, Celebrate Urban Birds, eBird, Great Backyard Bird Count, Project FeederWatch, NestWatch, Macaulay Library.
-
-Sign in to your Cornell Lab Account.
-
-One account. Many ways to explore, learn, and contribute.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'citizen-science', 'shorebirds'""" ;
-    sc:featureList edam:operation_3695 ;
-    sc:name "eBird" ;
-    sc:url "https://ebird.org/data/download" .
-
 <https://bio.tools/eCAMI> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0160,
@@ -179364,7 +177114,7 @@ eCAMI: Simultaneous Classification and Motif Identification for enzyme/CAZyme an
     sc:url "https://github.com/yinlabniu/eCAMI" .
 
 <https://bio.tools/eContour> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3382 ;
@@ -179376,32 +177126,8 @@ eCAMI: Simultaneous Classification and Motif Identification for enzyme/CAZyme an
     sc:name "eContour" ;
     sc:url "http://econtour.org" .
 
-<https://bio.tools/eHOMD> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0637,
-        edam:topic_0659,
-        edam:topic_3174,
-        edam:topic_3305,
-        edam:topic_3697 ;
-    sc:citation <https://doi.org/10.1101/791574> ;
-    sc:description """Construction of habitat-specific training sets to achieve species-level assignment in 16S rRNA gene datasets.
-
-16S rRNA Refseq V15.2 Genomic RefSeq V9.03.
-
-The goal of creating the expanded Human Oral Microbiome Database (eHOMD) is to provide the scientific community with comprehensive curated information on the bacterial species present in the human aerodigestive tract (ADT), which encompasses the upper digestive and upper respiratory tracts, including the oral cavity, pharynx, nasal passages, sinuses and esophagus. eHOMD should also serve well for the lower respiratory tract.
-
-HOMD 16S rRNA Gene Sequence Download.
-
-HOMD provides two different sets of 16S rRNA Gene Reference Sequence (RefSeq) for download and BLAST search:.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'V1-V3', '16S rRNA', '16S rRNA gene-derived ASVs', 'habitat-specific'""" ;
-    sc:featureList edam:operation_2421,
-        edam:operation_3192,
-        edam:operation_3460 ;
-    sc:name "eHOMD" ;
-    sc:url "http://www.homd.org/?name=seqDownload&type=R" .
-
 <https://bio.tools/eNetXplorer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0659,
@@ -179424,7 +177150,7 @@ HOMD provides two different sets of 16S rRNA Gene Reference Sequence (RefSeq) fo
     biotools:primaryContact "Julian Candia" .
 
 <https://bio.tools/ePOSSUM> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0749 ;
@@ -179440,7 +177166,7 @@ HOMD provides two different sets of 16S rRNA Gene Reference Sequence (RefSeq) fo
     sc:url "https://www.mutationdistiller.org/ePOSSUM2/index.html" .
 
 <https://bio.tools/ePath> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0602,
@@ -179455,62 +177181,8 @@ HOMD provides two different sets of 16S rRNA Gene Reference Sequence (RefSeq) fo
     sc:name "ePath" ;
     sc:url "https://www.pubapps.vcu.edu/epath/" .
 
-<https://bio.tools/eQTL> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0203,
-        edam:topic_0625,
-        edam:topic_0659,
-        edam:topic_3512,
-        edam:topic_3518 ;
-    sc:citation <https://doi.org/10.1186/S12864-019-6110-6>,
-        "pmcid:PMC6854704",
-        "pubmed:31722663" ;
-    sc:description """Insight into genetic regulation of miRNA in mouse brain.
-
-This repository contains the code necessary to run the analyses in Insight Into Genetic Regulation of miRNA in Mouse Brain. The RMD files should be ran in the following order:.
-
-The order of eQTL_target_genes,hotspot_analysis, phenotype_analysis, and bayesian_network_analysis does not matter. Due to the file size, the mRNA expression data resides at PhenoGen.org. The data can be found on the "Available Data Downloads" page under the Publications tab and going to the Processed Data section designated for, "Predictive Modeling of miRNA-mediated Predisposition to Alcohol-related Phenotypes in Mouse." The file is titled, "mRNA_expression_data_full.csv.zip." Please use this data in place of the data titled, "Adjusted_rma.summary.txt.".
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'miRNA', 'miRNA eQTL'""" ;
-    sc:featureList edam:operation_0463,
-        edam:operation_0533,
-        edam:operation_3196,
-        edam:operation_3792,
-        edam:operation_3799 ;
-    sc:name "eQTL" ;
-    sc:url "https://github.com/gordonkordas/mirnabraineqtl" .
-
-<https://bio.tools/eQTL_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0102,
-        edam:topic_0199,
-        edam:topic_3170,
-        edam:topic_3372 ;
-    sc:citation <https://doi.org/10.1007/978-1-0716-0026-9_9>,
-        "pubmed:31849012" ;
-    sc:description """Exploring Bayesian Approaches to eQTL Mapping Through Probabilistic Programming.
-
-Book chapter on Bayesian eQTL mapping using Stan.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'black-box', 'Stan', 'bespoke'""" ;
-    sc:featureList edam:operation_2429,
-        edam:operation_3659,
-        edam:operation_3799 ;
-    sc:license "MIT" ;
-    sc:name "eQTL_autogenerated" ;
-    sc:url "https://github.com/dvav/eQTLBookChapter" .
-
-<https://bio.tools/eScreening> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3379,
-        edam:topic_3393,
-        edam:topic_3419 ;
-    sc:citation <https://doi.org/10.1186/S12913-019-4436-Z>,
-        "pmcid:PMC6712612",
-        "pubmed:31462280" ;
-    sc:description "> MEDIUM CONFIDENCE! | > HOMEPAGE MISSING! | Implementing eScreening technology in four VA clinics | BACKGROUND:Technology-based self-assessment (TB-SA) benefits patients and providers and has shown feasibility, ease of use, efficiency, and cost savings. A promising TB-SA, the VA eScreening program, has shown promise for the efficient and effective collection of mental and physical health information. To assist adoption of eScreening by healthcare providers, we assessed technology-related as well as individual- and system-level factors that might influence the implementation of eScreening in four diverse VA clinics. METHODS:This was a mixed-method, pre-post, quasi-experimental study originally designed as a quality improvement project. The clinics were selected to represent a range of environments that could potentially benefit from TB-SA and that made use of the variety eScreening functions" ;
-    sc:name "eScreening" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31462280" .
-
 <https://bio.tools/eTRIKS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3342,
@@ -179530,7 +177202,7 @@ Book chapter on Bayesian eQTL mapping using Stan.
     sc:url "https://www.etriks.org/" .
 
 <https://bio.tools/eVIDENCE> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_2885,
@@ -179558,7 +177230,7 @@ Mizuno K. et al. eVIDENCE: a practical variant filtering for low-frequency varia
     sc:url "https://github.com/mizunokei/eVIDENCE" .
 
 <https://bio.tools/eVIP2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0602,
@@ -179580,7 +177252,7 @@ Expression-based variant impact phenotyping (eVIP) is an approach to predict fun
     sc:url "https://github.com/BrooksLabUCSC/eVIP2" .
 
 <https://bio.tools/ea-utils> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3071,
@@ -179601,7 +177273,7 @@ Expression-based variant impact phenotyping (eVIP) is an approach to predict fun
     biotools:primaryContact "ExpressionAnalysis Support" .
 
 <https://bio.tools/eager> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3056,
@@ -179620,7 +177292,7 @@ Expression-based variant impact phenotyping (eVIP) is an approach to predict fun
     biotools:primaryContact "Alexander Peltzer" .
 
 <https://bio.tools/eagerer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0130,
         edam:topic_0166,
         edam:topic_3474,
@@ -179639,7 +177311,7 @@ Expression-based variant impact phenotyping (eVIP) is an approach to predict fun
     sc:url "https://github.com/cliffgao/EAGERER" .
 
 <https://bio.tools/eagle> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0781,
@@ -179655,7 +177327,7 @@ Expression-based variant impact phenotyping (eVIP) is an approach to predict fun
     sc:url "http://bioinformatics.ua.pt/software/eagle/" .
 
 <https://bio.tools/eagle-enhancer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0749,
         edam:topic_3295 ;
@@ -179669,20 +177341,42 @@ Expression-based variant impact phenotyping (eVIP) is an approach to predict fun
     sc:name "EAGLE" ;
     sc:url "https://github.com/EvansGao/EAGLE" .
 
+<https://bio.tools/eagle_R> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_0625,
+        edam:topic_2885,
+        edam:topic_3500,
+        edam:topic_3517 ;
+    sc:citation <https://doi.org/10.1093/G3JOURNAL/JKAB204>,
+        "pmcid:PMC8496271",
+        "pubmed:34544142" ;
+    sc:description "Eagle is an R package for multi-locus association mapping on a genome-wide scale." ;
+    sc:featureList edam:operation_0484,
+        edam:operation_2429,
+        edam:operation_3799 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "Eagle" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://eagle.r-forge.r-project.org/index.html" .
+
 <https://bio.tools/eagle_gxe> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2093" ;
-            sc:name "Data reference" ;
-            sc:sameAs "http://edamontology.org/data_2093" ],
+            sc:additionalType "http://edamontology.org/data_2093" ;
+            sc:name "Data reference" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Gene expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ] ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_1213" ;
+            sc:name "Gene expression data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2032" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0625,
@@ -179699,8 +177393,53 @@ Expression-based variant impact phenotyping (eVIP) is an approach to predict fun
     sc:url "https://github.com/davidaknowles/eagle" ;
     biotools:primaryContact "David A Knowles" .
 
+<https://bio.tools/eaglec> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Workbench" ;
+    sc:applicationSubCategory edam:topic_0114,
+        edam:topic_3170,
+        edam:topic_3175,
+        edam:topic_3474,
+        edam:topic_3673 ;
+    sc:citation <https://doi.org/10.1126/SCIADV.ABN9215>,
+        "pmcid:PMC9200291",
+        "pubmed:35704579" ;
+    sc:description "A deep-learning framework for predicting a full range of structural variations from bulk and single-cell contact maps" ;
+    sc:featureList edam:operation_0272,
+        edam:operation_2429,
+        edam:operation_3228 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Other" ;
+    sc:name "EagleC" ;
+    sc:operatingSystem "Linux",
+        "Mac" ;
+    sc:url "https://github.com/XiaoTaoWang/EagleC" .
+
+<https://bio.tools/eagleimp> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0625,
+        edam:topic_0654,
+        edam:topic_3168,
+        edam:topic_3316,
+        edam:topic_3517 ;
+    sc:citation <https://doi.org/10.1101/2022.01.11.475810> ;
+    sc:description "Fast and Accurate Genome-wide Phasing and Imputation in a Single Tool." ;
+    sc:featureList edam:operation_3196,
+        edam:operation_3211,
+        edam:operation_3454,
+        edam:operation_3557 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "EagleImp" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/ikmb/eagleimp" .
+
 <https://bio.tools/eagleview> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0196,
@@ -179719,7 +177458,7 @@ Expression-based variant impact phenotyping (eVIP) is an approach to predict fun
     biotools:primaryContact "Clarice R. Weinberg" .
 
 <https://bio.tools/earn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0622,
@@ -179735,7 +177474,7 @@ Expression-based variant impact phenotyping (eVIP) is an approach to predict fun
     sc:url "https://github.com/lmirsadeghi/EARN/" .
 
 <https://bio.tools/earrings> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3168,
@@ -179751,7 +177490,7 @@ Expression-based variant impact phenotyping (eVIP) is an approach to predict fun
     sc:url "https://github.com/jhhung/EARRINGS" .
 
 <https://bio.tools/easal> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0176,
         edam:topic_0196,
@@ -179769,7 +177508,7 @@ Expression-based variant impact phenotyping (eVIP) is an approach to predict fun
     sc:url "https://bitbucket.org/geoplexity/easal" .
 
 <https://bio.tools/easeq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3169 ;
     sc:citation "pubmed:26926434" ;
@@ -179794,7 +177533,7 @@ It also integrates more than 20 tools for analysis. Finally, it automatically ge
     biotools:primaryContact "Mads Lerdrup" .
 
 <https://bio.tools/easer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application",
         "Workflow" ;
@@ -179816,7 +177555,7 @@ It also integrates more than 20 tools for analysis. Finally, it automatically ge
     biotools:primaryContact <https://orcid.org/0000-0002-0084-6116> .
 
 <https://bio.tools/easy2hard> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_3382,
         edam:topic_3474 ;
@@ -179831,10 +177570,9 @@ It also integrates more than 20 tools for analysis. Finally, it automatically ge
 
 <https://bio.tools/easyFRAP-web> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3108" ;
-            sc:name "Experimental measurement" ;
-            sc:sameAs "http://edamontology.org/data_3108" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3108" ;
+            sc:name "Experimental measurement" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3070 ;
     sc:citation <https://doi.org/10.1093/nar/gky508>,
@@ -179857,7 +177595,7 @@ It also integrates more than 20 tools for analysis. Finally, it automatically ge
     sc:url "https://easyfrap.vmnet.upatras.gr/" .
 
 <https://bio.tools/easyamber> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script",
         "Suite" ;
     sc:applicationSubCategory edam:topic_0128,
@@ -179876,7 +177614,7 @@ It also integrates more than 20 tools for analysis. Finally, it automatically ge
     sc:url "https://biokinet.belozersky.msu.ru/easyAmber" .
 
 <https://bio.tools/easybuild> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_3316 ;
     sc:description "EasyBuild is a software build and installation framework that allows you to manage (scientific) software on High Performance Computing (HPC) systems in an efficient way." ;
@@ -179889,7 +177627,7 @@ It also integrates more than 20 tools for analysis. Finally, it automatically ge
     biotools:primaryContact "EasyBuild Community" .
 
 <https://bio.tools/easycluster> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3047,
         edam:topic_3308 ;
@@ -179907,7 +177645,7 @@ It also integrates more than 20 tools for analysis. Finally, it automatically ge
     biotools:primaryContact "Ernesto Picardi" .
 
 <https://bio.tools/easyfig> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0797 ;
     sc:citation "pubmed:21278367" ;
@@ -179923,7 +177661,7 @@ It also integrates more than 20 tools for analysis. Finally, it automatically ge
     biotools:primaryContact "Easyfig Support" .
 
 <https://bio.tools/easyfrap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3070 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/bts241>,
@@ -179941,7 +177679,7 @@ It also integrates more than 20 tools for analysis. Finally, it automatically ge
     biotools:primaryContact "Zoi Lygerou" .
 
 <https://bio.tools/easyfulcrum> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_0621,
@@ -179960,8 +177698,31 @@ It also integrates more than 20 tools for analysis. Finally, it automatically ge
         "Windows" ;
     sc:url "http://andersenlab.org/easyfulcrum/articles/easyFulcrum.html" .
 
+<https://bio.tools/easygdb> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workbench" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0621,
+        edam:topic_0622,
+        edam:topic_0780,
+        edam:topic_3489 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC412>,
+        "pubmed:35748710" ;
+    sc:description "EasyGDB is an easy-to-implement low-maintenance tool developed to create genomic data management web platforms." ;
+    sc:featureList edam:operation_0362,
+        edam:operation_2421,
+        edam:operation_2422,
+        edam:operation_3208 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "EasyGDB" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/noefp/easy_gdb" .
+
 <https://bio.tools/easygene> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/bti701>,
@@ -179979,7 +177740,7 @@ It also integrates more than 20 tools for analysis. Finally, it automatically ge
     biotools:primaryContact "Pernille Nielsen" .
 
 <https://bio.tools/easylinkage> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0625,
@@ -180003,7 +177764,7 @@ It also integrates more than 20 tools for analysis. Finally, it automatically ge
     biotools:primaryContact "Support" .
 
 <https://bio.tools/easymap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0199,
         edam:topic_0780,
@@ -180018,7 +177779,7 @@ It also integrates more than 20 tools for analysis. Finally, it automatically ge
     biotools:primaryContact <https://orcid.org/0000-0002-0396-1750> .
 
 <https://bio.tools/easymf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_3170,
@@ -180031,8 +177792,30 @@ It also integrates more than 20 tools for analysis. Finally, it automatically ge
     sc:name "easyMF" ;
     sc:url "https://github.com/cma2015/easyMF" .
 
+<https://bio.tools/easymicroplot> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_3168,
+        edam:topic_3174,
+        edam:topic_3277,
+        edam:topic_3379,
+        edam:topic_3697 ;
+    sc:citation <https://doi.org/10.3389/FGENE.2021.803627>,
+        "pmcid:PMC8764268",
+        "pubmed:35058973" ;
+    sc:description "EasyMicroPlot package for microbiome analysis tool on R platform that accomplishes the core tasks of metagenomic down-stream analysis from start to finish, specially designed by screening popular microbial analysis and visualization." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3431 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "EasyMicroPlot" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/xielab2017/EasyMicroPlot" .
+
 <https://bio.tools/easyparallel> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3056,
@@ -180052,7 +177835,7 @@ It also integrates more than 20 tools for analysis. Finally, it automatically ge
     sc:url "https://github.com/hzz0024/EasyParallel" .
 
 <https://bio.tools/easyprot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -180064,7 +177847,7 @@ It also integrates more than 20 tools for analysis. Finally, it automatically ge
     sc:url "http://easyprot.unige.ch/" .
 
 <https://bio.tools/easyqc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0622,
@@ -180080,7 +177863,7 @@ It also integrates more than 20 tools for analysis. Finally, it automatically ge
     sc:url "http://www.uni-regensburg.de/medizin/epidemiologie-praeventivmedizin/genetische-epidemiologie/software/index.html" .
 
 <https://bio.tools/easyqpcr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3519 ;
@@ -180098,7 +177881,7 @@ It also integrates more than 20 tools for analysis. Finally, it automatically ge
     biotools:primaryContact "Le Pape Sylvain" .
 
 <https://bio.tools/easyrnaseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -180119,7 +177902,7 @@ It also integrates more than 20 tools for analysis. Finally, it automatically ge
     biotools:primaryContact "Nicolas Delhomme" .
 
 <https://bio.tools/easyvs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2275,
@@ -180140,7 +177923,7 @@ EasyVS is a web-based platform built to simplify molecule library selection and
     sc:url "http://biosig.unimelb.edu.au/easyvs" .
 
 <https://bio.tools/easyxpress> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0769,
@@ -180159,7 +177942,7 @@ EasyVS is a web-based platform built to simplify molecule library selection and
     biotools:primaryContact "Erik C. Andersen" .
 
 <https://bio.tools/eat-uptf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0749,
@@ -180175,7 +177958,7 @@ EasyVS is a web-based platform built to simplify molecule library selection and
     sc:url "https://github.com/sangreashim/EAT-UpTF" .
 
 <https://bio.tools/eatomics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -180193,7 +177976,7 @@ EasyVS is a web-based platform built to simplify molecule library selection and
     sc:url "https://github.com/Millchmaedchen/Eatomics" .
 
 <https://bio.tools/eautils> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "Command-line tools for processing biological sequencing data. Barcode demultiplexing, adapter trimming, etc. Primarily written to support an Illumina based pipeline - but should work with any FASTQs." ;
     sc:featureList edam:operation_0232,
         edam:operation_3192 ;
@@ -180201,7 +177984,7 @@ EasyVS is a web-based platform built to simplify molecule library selection and
     sc:url "http://expressionanalysis.github.io/ea-utils/" .
 
 <https://bio.tools/eb-eye> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1093/bib/bbp065> ;
@@ -180216,7 +177999,7 @@ EasyVS is a web-based platform built to simplify molecule library selection and
     sc:url "http://www.ebi.ac.uk/Tools/webservices/services/eb-eye_rest#clients" .
 
 <https://bio.tools/ebarrays> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203 ;
@@ -180235,7 +178018,7 @@ EasyVS is a web-based platform built to simplify molecule library selection and
     biotools:primaryContact "Ming Yuan" .
 
 <https://bio.tools/ebas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -180253,7 +178036,7 @@ EasyVS is a web-based platform built to simplify molecule library selection and
     biotools:primaryContact "Jimmy Y. Huang" .
 
 <https://bio.tools/ebcall> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0199,
@@ -180269,22 +178052,22 @@ EasyVS is a web-based platform built to simplify molecule library selection and
 
 <https://bio.tools/ebcoexpress> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0928" ;
-            sc:name "Gene expression profile" ;
-            sc:sameAs "http://edamontology.org/data_0928" ] ;
+            sc:additionalType "http://edamontology.org/data_0928" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Gene expression profile" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2082" ;
-            sc:name "Matrix" ;
-            sc:sameAs "http://edamontology.org/data_2082" ],
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Plot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ],
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Pathway or network" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2082" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Matrix" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -180304,7 +178087,7 @@ EasyVS is a web-based platform built to simplify molecule library selection and
     biotools:primaryContact "John A. Dawson" .
 
 <https://bio.tools/ebi_metagenomics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_3174 ;
     sc:citation <https://doi.org/10.1093/nar/gkv1195> ;
@@ -180319,7 +178102,7 @@ EasyVS is a web-based platform built to simplify molecule library selection and
     sc:url "https://www.ebi.ac.uk/metagenomics/" .
 
 <https://bio.tools/ebi_search> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0085,
         edam:topic_0089,
@@ -180351,7 +178134,7 @@ EasyVS is a web-based platform built to simplify molecule library selection and
     sc:url "https://www.ebi.ac.uk/ebisearch" .
 
 <https://bio.tools/ebi_tools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API",
         "Web application",
         "Web service" ;
@@ -180394,10 +178177,9 @@ EasyVS is a web-based platform built to simplify molecule library selection and
 
 <https://bio.tools/ebimage> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:name "Image" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3383 ;
     sc:author <http://orcid.org/0000-0002-0474-2218>,
@@ -180424,7 +178206,7 @@ EasyVS is a web-based platform built to simplify molecule library selection and
     biotools:primaryContact "Andrzej Oleś" .
 
 <https://bio.tools/eblocks> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -180436,7 +178218,7 @@ EasyVS is a web-based platform built to simplify molecule library selection and
     sc:url "http://motif.stanford.edu/distributions/eblocks/index.html" .
 
 <https://bio.tools/ebola_genome_portal> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0781 ;
     sc:citation <https://doi.org/10.1371/currents.outbreaks.386ab0964ab4d6c8cb550bfb6071d822>,
@@ -180454,7 +178236,7 @@ EasyVS is a web-based platform built to simplify molecule library selection and
     sc:url "https://genome.ucsc.edu/ebolaPortal/" .
 
 <https://bio.tools/ebolabase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0128,
@@ -180471,7 +178253,7 @@ EasyVS is a web-based platform built to simplify molecule library selection and
     biotools:primaryContact "Amouda Venkatesan" .
 
 <https://bio.tools/ebolaid> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0632 ;
     sc:citation <https://doi.org/10.1371/journal.pntd.0004757>,
@@ -180490,10 +178272,9 @@ The database provides different measures of sequence conservation for each targe
 
 <https://bio.tools/ebprot> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:name "Peptide identification" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0121 ;
     sc:citation <https://doi.org/10.1002/pmic.201400620>,
@@ -180516,7 +178297,7 @@ The database provides different measures of sequence conservation for each targe
         "Yunbin Zhang" .
 
 <https://bio.tools/ebsea> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -180537,18 +178318,18 @@ The database provides different measures of sequence conservation for each targe
 
 <https://bio.tools/ebseq> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0928" ;
-            sc:name "Gene expression profile" ;
-            sc:sameAs "http://edamontology.org/data_0928" ] ;
+            sc:additionalType "http://edamontology.org/data_0928" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Gene expression profile" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ],
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Plot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -180573,18 +178354,18 @@ The database provides different measures of sequence conservation for each targe
 
 <https://bio.tools/ebseqhmm> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0928" ;
-            sc:name "Gene expression profile" ;
-            sc:sameAs "http://edamontology.org/data_0928" ] ;
+            sc:additionalType "http://edamontology.org/data_0928" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Gene expression profile" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ],
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Plot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -180607,7 +178388,7 @@ The database provides different measures of sequence conservation for each targe
     biotools:primaryContact "Ning Leng" .
 
 <https://bio.tools/ebst> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0659,
@@ -180620,7 +178401,7 @@ The database provides different measures of sequence conservation for each targe
     sc:url "https://github.com/hanif-y/MMOICA-for-Biomarker-selection" .
 
 <https://bio.tools/ebwt2indel> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_2885,
@@ -180642,10 +178423,10 @@ The database provides different measures of sequence conservation for each targe
 
 <https://bio.tools/ec-clem> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3424" ;
-            sc:name "Raw image" ;
-            sc:sameAs "http://edamontology.org/data_3424" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3424" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Raw image" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0611,
         edam:topic_3385 ;
@@ -180661,7 +178442,7 @@ The database provides different measures of sequence conservation for each targe
     biotools:primaryContact "Perrine Paul-Gilloteaux" .
 
 <https://bio.tools/ec-pgmgr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2269,
@@ -180677,7 +178458,7 @@ The database provides different measures of sequence conservation for each targe
     sc:url "https://github.com/zhuyuan-cug/zhuyuan-lab" .
 
 <https://bio.tools/ecalibrator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0602,
@@ -180695,7 +178476,7 @@ The database provides different measures of sequence conservation for each targe
     sc:url "http://ecalibrator.bi.up.ac.za" .
 
 <https://bio.tools/ecccl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0091 ;
@@ -180713,7 +178494,7 @@ The database provides different measures of sequence conservation for each targe
     biotools:primaryContact "Mona Riemenschneider" .
 
 <https://bio.tools/eccdia> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_2640,
         edam:topic_3305,
@@ -180728,8 +178509,34 @@ The database provides different measures of sequence conservation for each targe
     sc:name "ECCDIA" ;
     sc:url "http://webapps.3steps.cn/ECCDIA/" .
 
+<https://bio.tools/eccdnadb> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0654,
+        edam:topic_2640,
+        edam:topic_3173,
+        edam:topic_3673 ;
+    sc:citation <https://doi.org/10.1038/S41388-022-02286-X>,
+        "pmcid:PMC9076536",
+        "pubmed:35388171" ;
+    sc:description "A database of extrachromosomal circular DNA profiles in human cancers." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_2421,
+        edam:operation_3192,
+        edam:operation_3223,
+        edam:operation_3894 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "eccDNAdb" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://www.eccdnadb.org" .
+
 <https://bio.tools/eccetera> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3053,
@@ -180746,7 +178553,7 @@ The database provides different measures of sequence conservation for each targe
     biotools:primaryContact "Celine Scornavacca" .
 
 <https://bio.tools/eccparacorp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_2640,
@@ -180762,7 +178569,7 @@ The database provides different measures of sequence conservation for each targe
     sc:url "http://www.phoc.org.cn/ECCParaCorp/" .
 
 <https://bio.tools/eccsplorer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_0769,
@@ -180782,8 +178589,21 @@ The database provides different measures of sequence conservation for each targe
         "Windows" ;
     sc:url "https://github.com/crimBubble/ECCsplorer" .
 
+<https://bio.tools/ecdb> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:description "ECDB, a manually curated database is designed and developed to provide a comprehensive resource of genes deregulated in Endometrial cancer." ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "ecdb" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/ecdb/index.php> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/ecdb/index.php" .
+
 <https://bio.tools/ecdc-covid19-tracking> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344 ;
@@ -180798,7 +178618,7 @@ The database provides different measures of sequence conservation for each targe
     biotools:primaryContact "MH" .
 
 <https://bio.tools/ecfs-dea> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3170,
@@ -180818,8 +178638,21 @@ The database provides different measures of sequence conservation for each targe
         "Windows" ;
     sc:url "http://bio-nefu.com/resource/ecfs-dea" .
 
+<https://bio.tools/ecgpred> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:description "This server allows user to analysis the expression data (Microarray Data) where it calculate correlation coefficient between level of gene expression and nucleotides composition of genes." ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "ecgpred" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/ecgpred/> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/ecgpred/" .
+
 <https://bio.tools/echidna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0625,
@@ -180832,8 +178665,59 @@ The database provides different measures of sequence conservation for each targe
     sc:name "Echidna" ;
     sc:url "https://github.com/alexyermanos/Echidna" .
 
+<https://bio.tools/echinobase> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0089,
+        edam:topic_0203,
+        edam:topic_0621,
+        edam:topic_3067,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAB1005>,
+        "pmcid:PMC8728261",
+        "pubmed:34791383" ;
+    sc:description "Leveraging an extant model organism database to build a knowledgebase supporting research on the genomics and biology of echinoderms." ;
+    sc:featureList edam:operation_0525,
+        edam:operation_3208,
+        edam:operation_3216,
+        edam:operation_3431,
+        edam:operation_3663 ;
+    sc:isAccessibleForFree true ;
+    sc:name "Echinobase" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://www.echinobase.org" .
+
+<https://bio.tools/echinodb> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_0968" ;
+            sc:name "Keyword" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2299" ;
+            sc:name "Gene name" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0196,
+        edam:topic_0602,
+        edam:topic_3170,
+        edam:topic_3304,
+        edam:topic_3308 ;
+    sc:citation <https://doi.org/10.1101/2022.01.03.474134> ;
+    sc:description "EchinoDB is a database consisting of amino acid sequence othoclusters from 42 echinoderm transcriptomes. We sampled taxa to span the deepest divergences within each of the 5 extant echinoderm classes. Data can be searched by keywords such as annotation and database identifiers from the Strongylocentrotus purpuratus reference protein set at NCBI." ;
+    sc:featureList edam:operation_0524,
+        edam:operation_0525,
+        edam:operation_2421 ;
+    sc:isAccessibleForFree true ;
+    sc:name "EchinoDB" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://echinodb.uncc.edu" .
+
 <https://bio.tools/echmet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_3489 ;
     sc:citation <https://doi.org/10.1002/ELPS.201900381>,
@@ -180844,7 +178728,7 @@ The database provides different measures of sequence conservation for each targe
     sc:url "https://echmet.natur.cuni.cz/" .
 
 <https://bio.tools/echo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3572 ;
     sc:citation "pubmed:21482625" ;
@@ -180861,7 +178745,7 @@ The database provides different measures of sequence conservation for each targe
         "Wei-Chun Kao" .
 
 <https://bio.tools/echo-circadian> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3070,
@@ -180875,7 +178759,7 @@ The database provides different measures of sequence conservation for each targe
     sc:url "https://github.com/delosh653/ECHO" .
 
 <https://bio.tools/echo-syncnet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3474 ;
@@ -180892,14 +178776,13 @@ The database provides different measures of sequence conservation for each targe
 
 <https://bio.tools/echobase> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1026" ;
-            sc:name "Gene symbol" ;
-            sc:sameAs "http://edamontology.org/data_1026" ] ;
+            sc:additionalType "http://edamontology.org/data_1026" ;
+            sc:name "Gene symbol" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0916" ;
-            sc:name "Gene report" ;
-            sc:sameAs "http://edamontology.org/data_0916" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0916" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Gene report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0621 ;
     sc:citation <https://doi.org/10.1093/nar/gki028>,
@@ -180914,64 +178797,77 @@ The database provides different measures of sequence conservation for each targe
     sc:softwareHelp <http://www.york.ac.uk/res/thomas/Introduction.htm> ;
     sc:url "http://www.york.ac.uk/res/thomas/" .
 
+<https://bio.tools/echolocator> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library",
+        "Workflow" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_0625,
+        edam:topic_0769,
+        edam:topic_3173,
+        edam:topic_3517 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAB658>,
+        "pubmed:34529038" ;
+    sc:description "Automated statistical and functional fine-mapping pipeline with extensive API access to datasets." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3501,
+        edam:operation_3661 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "echolocatoR" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://rajlabmssm.github.io/echolocatoR" .
+
 <https://bio.tools/ecid> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2802" ;
-            sc:name "Protein ID (EcID)" ;
-            sc:sameAs "http://edamontology.org/data_2802" ],
+            sc:additionalType "http://edamontology.org/data_2802" ;
+            sc:name "Protein ID (EcID)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2802" ;
-            sc:name "Protein ID (EcID)" ;
-            sc:sameAs "http://edamontology.org/data_2802" ],
+            sc:additionalType "http://edamontology.org/data_1026" ;
+            sc:name "Gene symbol" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1026" ;
-            sc:name "Gene symbol" ;
-            sc:sameAs "http://edamontology.org/data_1026" ],
+            sc:additionalType "http://edamontology.org/data_1026" ;
+            sc:name "Gene symbol" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2802" ;
-            sc:name "Protein ID (EcID)" ;
-            sc:sameAs "http://edamontology.org/data_2802" ],
+            sc:additionalType "http://edamontology.org/data_2802" ;
+            sc:name "Protein ID (EcID)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1026" ;
-            sc:name "Gene symbol" ;
-            sc:sameAs "http://edamontology.org/data_1026" ],
+            sc:additionalType "http://edamontology.org/data_0989" ;
+            sc:name "Protein identifier" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0989" ;
-            sc:name "Protein identifier" ;
-            sc:sameAs "http://edamontology.org/data_0989" ],
+            sc:additionalType "http://edamontology.org/data_0989" ;
+            sc:name "Protein identifier" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0989" ;
-            sc:name "Protein identifier" ;
-            sc:sameAs "http://edamontology.org/data_0989" ],
+            sc:additionalType "http://edamontology.org/data_0989" ;
+            sc:name "Protein identifier" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0989" ;
-            sc:name "Protein identifier" ;
-            sc:sameAs "http://edamontology.org/data_0989" ],
+            sc:additionalType "http://edamontology.org/data_2802" ;
+            sc:name "Protein ID (EcID)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1026" ;
-            sc:name "Gene symbol" ;
-            sc:sameAs "http://edamontology.org/data_1026" ],
+            sc:additionalType "http://edamontology.org/data_0989" ;
+            sc:name "Protein identifier" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0989" ;
-            sc:name "Protein identifier" ;
-            sc:sameAs "http://edamontology.org/data_0989" ] ;
+            sc:additionalType "http://edamontology.org/data_1026" ;
+            sc:name "Gene symbol" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0896" ;
-            sc:name "Protein report" ;
-            sc:sameAs "http://edamontology.org/data_0896" ],
+            sc:additionalType "http://edamontology.org/data_0896" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Protein report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2093" ;
-            sc:name "Data reference" ;
-            sc:sameAs "http://edamontology.org/data_2093" ],
+            sc:additionalType "http://edamontology.org/data_2093" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Data reference" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0906" ;
-            sc:name "Protein interaction data" ;
-            sc:sameAs "http://edamontology.org/data_0906" ],
+            sc:additionalType "http://edamontology.org/data_0906" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Protein interaction data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0906" ;
-            sc:name "Protein interaction data" ;
-            sc:sameAs "http://edamontology.org/data_0906" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0906" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Protein interaction data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0128 ;
     sc:citation <https://doi.org/10.1016/S0959-440X(02)00333-0>,
@@ -180983,7 +178879,7 @@ The database provides different measures of sequence conservation for each targe
     sc:url "http://ecid.bioinfo.cnio.es/index.php" .
 
 <https://bio.tools/ecif> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_2275,
@@ -180997,8 +178893,18 @@ The database provides different measures of sequence conservation for each targe
     sc:name "ECIF" ;
     sc:url "https://github.com/DIFACQUIM/ECIF" .
 
+<https://bio.tools/ecj> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:citation <https://doi.org/10.1145/3319619.3326865> ;
+    sc:description "ECJ is a research EC system written in Java. It was designed to be highly flexible, with nearly all classes (and all of their settings) dynamically determined at runtime by a user-provided parameter file. All structures in the system are arranged to be easily modifiable. Even so, the system was designed with an eye toward efficiency." ;
+    sc:isAccessibleForFree true ;
+    sc:name "ECJ" ;
+    sc:softwareHelp <https://cs.gmu.edu/~eclab/projects/ecj/> ;
+    sc:softwareVersion "27" ;
+    sc:url "https://cs.gmu.edu/~eclab/projects/ecj/" .
+
 <https://bio.tools/eclipse> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3053,
@@ -181013,7 +178919,7 @@ The database provides different measures of sequence conservation for each targe
     sc:url "http://www.stat.washington.edu/thompson/Genepi/Eclipse.shtml" .
 
 <https://bio.tools/ecmpride> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
         edam:topic_0128,
@@ -181031,8 +178937,32 @@ The database provides different measures of sequence conservation for each targe
     sc:softwareHelp <https://github.com/Binghui-Liu/ECMPride/blob/master/User%20Manual%20for%20ECMPride.pdf> ;
     sc:url "https://github.com/Binghui-Liu/ECMPride" .
 
+<https://bio.tools/eco> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0077,
+        edam:topic_0089,
+        edam:topic_0625,
+        edam:topic_3068,
+        edam:topic_3473 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAB1025>,
+        "pmcid:PMC8728134",
+        "pubmed:34986598" ;
+    sc:description "The Evidence and Conclusion Ontology (ECO) is a community resource that provides an ontology of terms used to capture the type of evidence that supports biomedical annotations and assertions." ;
+    sc:featureList edam:operation_2428,
+        edam:operation_3096,
+        edam:operation_3431 ;
+    sc:isAccessibleForFree true ;
+    sc:license "CC0-1.0" ;
+    sc:name "ECO" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/evidenceontology/evidenceontology" .
+
 <https://bio.tools/eco-collectf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0218,
         edam:topic_0219,
@@ -181050,7 +178980,7 @@ The database provides different measures of sequence conservation for each targe
     sc:url "https://github.com/ErillLab/ECO-CollecTF" .
 
 <https://bio.tools/ecocyc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0204,
@@ -181067,8 +178997,25 @@ The database provides different measures of sequence conservation for each targe
     sc:url "http://EcoCyc.org" ;
     biotools:primaryContact "BioCYC Support" .
 
+<https://bio.tools/ecodiet> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0610,
+        edam:topic_2269,
+        edam:topic_3068 ;
+    sc:citation <https://doi.org/10.1002/EAP.2521>,
+        "pubmed:34918402" ;
+    sc:description "A hierarchical Bayesian model to combine stomach, biotracer, and literature data into diet matrix estimation." ;
+    sc:featureList edam:operation_3927 ;
+    sc:isAccessibleForFree true ;
+    sc:name "EcoDiet" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/pyhernvann/EcoDiet" .
+
 <https://bio.tools/ecoevoapps> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_3299,
@@ -181086,14 +179033,13 @@ The database provides different measures of sequence conservation for each targe
 
 <https://bio.tools/ecogene> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1795" ;
-            sc:name "Gene ID (EcoGene)" ;
-            sc:sameAs "http://edamontology.org/data_1795" ] ;
+            sc:additionalType "http://edamontology.org/data_1795" ;
+            sc:name "Gene ID (EcoGene)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0916" ;
-            sc:name "Gene report" ;
-            sc:sameAs "http://edamontology.org/data_0916" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0916" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Gene report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0621 ;
     sc:citation <https://doi.org/10.1093/nar/gks1235> ;
@@ -181109,24 +179055,44 @@ The database provides different measures of sequence conservation for each targe
     sc:url "http://www.ecogene.org/old/" ;
     biotools:primaryContact "Dr. Kenneth E. Rudd" .
 
+<https://bio.tools/ecoligd> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0622,
+        edam:topic_2229,
+        edam:topic_3895 ;
+    sc:citation <https://doi.org/10.1021/ACSSYNBIO.2C00165>,
+        "pubmed:35770895" ;
+    sc:description "EcoliGD is an online tool for designing artificial Escherichia coli genome and viewing function related information of the genome Escherichia coli str. K-12 substr. MG1655" ;
+    sc:featureList edam:operation_0284,
+        edam:operation_3208,
+        edam:operation_3907 ;
+    sc:license "Not licensed" ;
+    sc:name "EcoliGD" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <http://guolab.whu.edu.cn/EcoliGD/#/help> ;
+    sc:url "http://guolab.whu.edu.cn/EcoliGD/" .
+
 <https://bio.tools/ecolitk> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ],
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:encodingFormat "http://edamontology.org/format_1919" ;
+            sc:name "Sequence features" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1919" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ],
+            sc:additionalType "http://edamontology.org/data_1286" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Plasmid map" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1286" ;
-            sc:name "Plasmid map" ;
-            sc:sameAs "http://edamontology.org/data_1286" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Sequence features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0092 ;
@@ -181145,7 +179111,7 @@ The database provides different measures of sequence conservation for each targe
     biotools:primaryContact "Laurent Gautier" .
 
 <https://bio.tools/ecompass> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0084,
         edam:topic_0160,
@@ -181162,7 +179128,7 @@ The database provides different measures of sequence conservation for each targe
     sc:url "https://www.igs.umaryland.edu/labs/neuwald/software/compass" .
 
 <https://bio.tools/econtact> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0154,
@@ -181184,7 +179150,7 @@ The database provides different measures of sequence conservation for each targe
     sc:url "https://www.gujaratuniversity.ac.in/econtact/" .
 
 <https://bio.tools/econvRBP> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_3474 ;
@@ -181195,8 +179161,30 @@ The database provides different measures of sequence conservation for each targe
     sc:name "econvRBP" ;
     sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31513916" .
 
+<https://bio.tools/ecoplot> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_0625,
+        edam:topic_0780,
+        edam:topic_3474,
+        edam:topic_3697 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAB842>,
+        "pmcid:PMC8825466",
+        "pubmed:34927685" ;
+    sc:description "EcoPLOT is an interactive web-application for the analysis of multivariate-biogeochemical datasets." ;
+    sc:featureList edam:operation_3435 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "EcoPLOT" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/cdsanchez18/EcoPLOT" .
+
 <https://bio.tools/ecr_browser> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0622,
@@ -181217,7 +179205,7 @@ The database provides different measures of sequence conservation for each targe
     biotools:primaryContact "ECR Browser Support" .
 
 <https://bio.tools/ectracker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -181237,8 +179225,36 @@ EcTracker possesses two distinct modules i.e. CellEnrich and TissueEnrich, to al
         "Windows" ;
     sc:url "https://the-ahuja-lab.shinyapps.io/ectracker/" .
 
+<https://bio.tools/ectyper> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0196,
+        edam:topic_0625,
+        edam:topic_0769,
+        edam:topic_3305,
+        edam:topic_3673 ;
+    sc:citation <https://doi.org/10.1099/MGEN.0.000728>,
+        "pmcid:PMC8767331",
+        "pubmed:34860150" ;
+    sc:description "Ectyper is a standalone serotyping module for Escherichia coli. It supports fasta and fastq file formats. (Galaxy Version 1.0.0)" ;
+    sc:featureList edam:operation_0310,
+        edam:operation_3219,
+        edam:operation_3227 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Apache-2.0" ;
+    sc:name "ECTyper" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://usegalaxy.eu/root?tool_id=ectyper" .
+
 <https://bio.tools/ecuador> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0194,
@@ -181259,14 +179275,14 @@ EcTracker possesses two distinct modules i.e. CellEnrich and TissueEnrich, to al
 
 <https://bio.tools/eda> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2526" ;
-            sc:name "Text data" ;
-            sc:sameAs "http://edamontology.org/data_2526" ] ;
+            sc:additionalType "http://edamontology.org/data_2526" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Text data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_3617" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0607,
         edam:topic_3679 ;
@@ -181284,7 +179300,7 @@ EcTracker possesses two distinct modules i.e. CellEnrich and TissueEnrich, to al
     sc:url "https://eda.nc3rs.org.uk/" .
 
 <https://bio.tools/edafoldaa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0196,
@@ -181301,7 +179317,7 @@ EcTracker possesses two distinct modules i.e. CellEnrich and TissueEnrich, to al
     sc:url "http://www.riken.jp/zhangiru/software.html" .
 
 <https://bio.tools/edal> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application",
         "Web API" ;
@@ -181325,10 +179341,10 @@ EcTracker possesses two distinct modules i.e. CellEnrich and TissueEnrich, to al
 
 <https://bio.tools/edam-browser> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0582" ;
-            sc:name "Ontology" ;
-            sc:sameAs "http://edamontology.org/data_0582" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0582" ;
+            sc:encodingFormat "http://edamontology.org/format_3464" ;
+            sc:name "Ontology" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -181354,10 +179370,9 @@ Its goals are to help describing bio-related resources and service with EDAM, an
 
 <https://bio.tools/edamdef> a sc:SoftwareApplication ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2223" ;
-            sc:name "Ontology metadata" ;
-            sc:sameAs "http://edamontology.org/data_2223" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2223" ;
+            sc:name "Ontology metadata" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0089 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -181388,10 +179403,9 @@ Its goals are to help describing bio-related resources and service with EDAM, an
 
 <https://bio.tools/edamhasinput> a sc:SoftwareApplication ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2223" ;
-            sc:name "Ontology metadata" ;
-            sc:sameAs "http://edamontology.org/data_2223" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2223" ;
+            sc:name "Ontology metadata" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0089 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -181422,10 +179436,9 @@ Its goals are to help describing bio-related resources and service with EDAM, an
 
 <https://bio.tools/edamhasoutput> a sc:SoftwareApplication ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2223" ;
-            sc:name "Ontology metadata" ;
-            sc:sameAs "http://edamontology.org/data_2223" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2223" ;
+            sc:name "Ontology metadata" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0089 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -181456,10 +179469,9 @@ Its goals are to help describing bio-related resources and service with EDAM, an
 
 <https://bio.tools/edamisformat> a sc:SoftwareApplication ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2223" ;
-            sc:name "Ontology metadata" ;
-            sc:sameAs "http://edamontology.org/data_2223" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2223" ;
+            sc:name "Ontology metadata" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0089 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -181490,10 +179502,9 @@ Its goals are to help describing bio-related resources and service with EDAM, an
 
 <https://bio.tools/edamisid> a sc:SoftwareApplication ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2223" ;
-            sc:name "Ontology metadata" ;
-            sc:sameAs "http://edamontology.org/data_2223" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2223" ;
+            sc:name "Ontology metadata" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0089 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -181524,10 +179535,9 @@ Its goals are to help describing bio-related resources and service with EDAM, an
 
 <https://bio.tools/edamname> a sc:SoftwareApplication ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2223" ;
-            sc:name "Ontology metadata" ;
-            sc:sameAs "http://edamontology.org/data_2223" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2223" ;
+            sc:name "Ontology metadata" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0089 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -181557,7 +179567,7 @@ Its goals are to help describing bio-related resources and service with EDAM, an
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/edamname.html" .
 
 <https://bio.tools/edaseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -181578,8 +179588,52 @@ Its goals are to help describing bio-related resources and service with EDAM, an
     sc:url "http://bioconductor.org/packages/release/bioc/html/EDASeq.html" ;
     biotools:primaryContact "Davide Risso" .
 
+<https://bio.tools/edcnn> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0128,
+        edam:topic_0160,
+        edam:topic_3299,
+        edam:topic_3474,
+        edam:topic_3794 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAB739>,
+        "pubmed:34694393" ;
+    sc:description "Identification of Genome-Wide RNA-binding Proteins Using Evolutionary Deep Convolutional Neural Network." ;
+    sc:featureList edam:operation_3901,
+        edam:operation_3902,
+        edam:operation_3927 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "EDCNN" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/yaweiwang1232/EDCNN" .
+
+<https://bio.tools/edctp> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Bioinformatics portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_3063,
+        edam:topic_3324,
+        edam:topic_3379,
+        edam:topic_3418 ;
+    sc:citation <https://doi.org/10.1186/S13063-022-06311-Y>,
+        "pmcid:PMC9077850",
+        "pubmed:35526046" ;
+    sc:description "The European & Developing Countries Clinical Trials Partnership (EDCTP) Knowledge Hub." ;
+    sc:featureList edam:operation_0224,
+        edam:operation_0496 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "EDCTP" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://edctpknowledgehub.tghn.org/" .
+
 <https://bio.tools/edda> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0622 ;
@@ -181599,7 +179653,7 @@ Its goals are to help describing bio-related resources and service with EDAM, an
         "Niranjan Nagarajan" .
 
 <https://bio.tools/edena> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0622,
@@ -181616,24 +179670,44 @@ Its goals are to help describing bio-related resources and service with EDAM, an
     sc:url "http://www.genomic.ch/edena" ;
     biotools:primaryContact "Dr David HERNANDEZ" .
 
+<https://bio.tools/edese> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workbench" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_0634,
+        edam:topic_2259,
+        edam:topic_3053,
+        edam:topic_3517 ;
+    sc:citation <https://doi.org/10.7554/ELIFE.70779>,
+        "pmcid:PMC9005191",
+        "pubmed:35412455" ;
+    sc:description "A conditional gene-based association framework integrating isoform-level eQTL data reveals new susceptibility genes for schizophrenia" ;
+    sc:featureList edam:operation_3196,
+        edam:operation_3227,
+        edam:operation_3232 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "eDESE" ;
+    sc:url "https://github.com/pmglab/eDESE" .
+
 <https://bio.tools/edgar> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3668" ;
-            sc:name "Disease name" ;
-            sc:sameAs "http://edamontology.org/data_3668" ],
+            sc:additionalType "http://edamontology.org/data_1153" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "OMIM ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1153" ;
-            sc:name "OMIM ID" ;
-            sc:sameAs "http://edamontology.org/data_1153" ] ;
+            sc:additionalType "http://edamontology.org/data_3668" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Disease name" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1622" ;
-            sc:name "Disease report" ;
-            sc:sameAs "http://edamontology.org/data_1622" ],
+            sc:additionalType "http://edamontology.org/data_1622" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Disease report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1622" ;
-            sc:name "Disease report" ;
-            sc:sameAs "http://edamontology.org/data_1622" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1622" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Disease report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0634,
@@ -181659,10 +179733,10 @@ Its goals are to help describing bio-related resources and service with EDAM, an
 
 <https://bio.tools/edgar_genomics> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2887" ;
-            sc:name "Nucleic acid sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2887" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2887" ;
+            sc:encodingFormat "http://edamontology.org/format_1936" ;
+            sc:name "Nucleic acid sequence record" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0797 ;
     sc:citation <https://doi.org/10.1093/nar/gkw255>,
@@ -181680,18 +179754,18 @@ Its goals are to help describing bio-related resources and service with EDAM, an
 
 <https://bio.tools/edge> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1919" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ],
+            sc:additionalType "http://edamontology.org/data_1669" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "P-value" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1669" ;
-            sc:name "P-value" ;
-            sc:sameAs "http://edamontology.org/data_1669" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -181712,7 +179786,7 @@ Its goals are to help describing bio-related resources and service with EDAM, an
         "John D. Storey" .
 
 <https://bio.tools/edge-pro> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3170 ;
@@ -181726,7 +179800,7 @@ Its goals are to help describing bio-related resources and service with EDAM, an
     sc:url "https://ccb.jhu.edu/software/EDGE-pro/index.shtml" .
 
 <https://bio.tools/edge-stop-functions-edge-based-active_contour-models-medical-image-segmentation> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3299,
@@ -181744,28 +179818,55 @@ Its goals are to help describing bio-related resources and service with EDAM, an
     sc:url "https://www.mathworks.com/matlabcentral/fileexchange/62709-robust-edge-stop-functions-for-edge-based-active-contour-models-in-medical-image-segmentation" ;
     biotools:primaryContact "gus" .
 
+<https://bio.tools/edge_covid-19> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0769,
+        edam:topic_3168,
+        edam:topic_3305,
+        edam:topic_3324 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC176>,
+        "pubmed:35325090" ;
+    sc:description "A Web Platform to generate submission-ready genomes from SARS-CoV-2 sequencing efforts." ;
+    sc:featureList edam:operation_3218,
+        edam:operation_3227,
+        edam:operation_3478 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "EDGE COVID-19" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://edge-covid19.edgebioinformatics.org" .
+
 <https://bio.tools/edger> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1919" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ],
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Plot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1669" ;
-            sc:name "P-value" ;
-            sc:sameAs "http://edamontology.org/data_1669" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1669" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "P-value" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3053,
         edam:topic_3169,
         edam:topic_3170 ;
-    sc:citation <https://doi.org/10.1093/nar/gks042>,
+    sc:citation <https://doi.org/10.1093/bioinformatics/btp616>,
+        <https://doi.org/10.1093/nar/gks042>,
+        <https://doi.org/10.12688/f1000research.8987.2>,
+        "pmcid:PMC2796818",
         "pmcid:PMC3378882",
-        "pubmed:22287627" ;
+        "pmcid:PMC4934518",
+        "pubmed:19910308",
+        "pubmed:22287627",
+        "pubmed:27508061" ;
     sc:description "Differential expression analysis of RNA-seq expression profiles with biological replication. Implements a range of statistical methodology based on the negative binomial distributions, including empirical Bayes estimation, exact tests, generalized linear models and quasi-likelihood tests. As well as RNA-seq, it be applied to differential signal analysis of other types of genomic data that produce counts, including ChIP-seq, SAGE and CAGE." ;
     sc:featureList edam:operation_3223 ;
     sc:license "GPL-2.0" ;
@@ -181783,7 +179884,7 @@ Its goals are to help describing bio-related resources and service with EDAM, an
         "Yunshun Chen" .
 
 <https://bio.tools/edhb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0154,
@@ -181803,18 +179904,17 @@ Its goals are to help describing bio-related resources and service with EDAM, an
 
 <https://bio.tools/edia> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ],
+            sc:additionalType "http://edamontology.org/data_1461" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein-ligand complex" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1461" ;
-            sc:name "Protein-ligand complex" ;
-            sc:sameAs "http://edamontology.org/data_1461" ] ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein structure" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1772" ;
-            sc:name "Score" ;
-            sc:sameAs "http://edamontology.org/data_1772" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1772" ;
+            sc:name "Score" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_2828 ;
@@ -181834,18 +179934,15 @@ Its goals are to help describing bio-related resources and service with EDAM, an
 
 <https://bio.tools/edialign> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:name "Sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0097 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -181874,8 +179971,22 @@ Its goals are to help describing bio-related resources and service with EDAM, an
     sc:softwareVersion "r6" ;
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/edialign.html" .
 
+<https://bio.tools/edirect> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_3366 ;
+    sc:description "Entrez Direct (EDirect) is a command-line tool for Entrez databases. EDirect connects to Entrez through the Entrez Programming Utilities interface. It supports searching by indexed terms, looking up precomputed neighbors or links, filtering results by date or category, and downloading record summaries or reports." ;
+    sc:featureList edam:operation_3908 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Freeware" ;
+    sc:name "EDirect" ;
+    sc:operatingSystem "Linux",
+        "Mac" ;
+    sc:softwareHelp <http://www.ncbi.nlm.nih.gov/books/NBK179288> ;
+    sc:url "https://ftp.ncbi.nlm.nih.gov/entrez/entrezdirect" .
+
 <https://bio.tools/edisa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3277 ;
@@ -181889,7 +180000,7 @@ Its goals are to help describing bio-related resources and service with EDAM, an
     sc:url "http://www.ra.cs.uni-tuebingen.de/software/EDISA/welcome_e.html" .
 
 <https://bio.tools/editgds> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3053 ;
     sc:description "EditGDS is a visual tool for browsing and editing Genomic Data Structure (GDS) files" ;
@@ -181900,7 +180011,7 @@ Its goals are to help describing bio-related resources and service with EDAM, an
     sc:url "http://corearray.sourceforge.net/" .
 
 <https://bio.tools/ediva> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0622,
@@ -181926,7 +180037,7 @@ You will need to run git clone https://github.com/mbosio85/ediva.git to get eDiV
     sc:url "https://github.com/mbosio85/ediva" .
 
 <https://bio.tools/edlmfc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0602,
@@ -181946,7 +180057,7 @@ You will need to run git clone https://github.com/mbosio85/ediva.git to get eDiV
     biotools:primaryContact "Jianjun Tan" .
 
 <https://bio.tools/edmr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3295,
@@ -181962,8 +180073,21 @@ You will need to run git clone https://github.com/mbosio85/ediva.git to get eDiV
     sc:softwareVersion "0.5.1" ;
     sc:url "https://code.google.com/p/edmr/" .
 
+<https://bio.tools/edn> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Desktop application" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_3382 ;
+    sc:citation <https://doi.org/10.1109/TIP.2022.3164550>,
+        "pubmed:35412981" ;
+    sc:description "Extremely-Downsampled Network (EDN), which employs an extreme downsampling technique to effectively learn a global view of the whole image, leading to accurate salient object localization." ;
+    sc:isAccessibleForFree true ;
+    sc:license "CC-BY-NC-SA-4.0" ;
+    sc:name "EDN" ;
+    sc:url "https://github.com/yuhuan-wu/EDN" .
+
 <https://bio.tools/ednaflow> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3168 ;
@@ -181979,8 +180103,23 @@ You will need to run git clone https://github.com/mbosio85/ediva.git to get eDiV
     sc:url "https://github.com/mahsa-mousavi/eDNAFlow" ;
     biotools:primaryContact <https://orcid.org/0000-0002-2299-2050> .
 
+<https://bio.tools/ednassay> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0632,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1111/1755-0998.13681>,
+        "pubmed:35778862" ;
+    sc:description "A machine learning tool that accurately predicts qPCR cross-amplification." ;
+    sc:license "Not licensed" ;
+    sc:name "eDNAssay" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://NationalGenomicsCenter.shinyapps.io/eDNAssay" .
+
 <https://bio.tools/edock-ml> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2275,
@@ -181997,8 +180136,30 @@ You will need to run git clone https://github.com/mbosio85/ediva.git to get eDiV
     sc:softwareHelp <http://edock-ml.umsl.edu/about> ;
     sc:url "http://edock-ml.umsl.edu" .
 
+<https://bio.tools/edotrans> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0091,
+        edam:topic_3063,
+        edam:topic_3315,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1186/S12859-022-04769-W>,
+        "pmcid:PMC9202178",
+        "pubmed:35710346" ;
+    sc:description "A data transformation method which takes into account the special property of scale non-invariance with a breakpoint at 1 of the Euclidean distance." ;
+    sc:featureList edam:operation_2939,
+        edam:operation_3432,
+        edam:operation_3435 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "EDOtrans" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://cran.r-project.org/package=EDOtrans" .
+
 <https://bio.tools/edpr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_0749,
         edam:topic_3306,
@@ -182016,14 +180177,13 @@ You will need to run git clone https://github.com/mbosio85/ediva.git to get eDiV
 
 <https://bio.tools/eds> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1127" ;
-            sc:name "PDB ID" ;
-            sc:sameAs "http://edamontology.org/data_1127" ] ;
+            sc:additionalType "http://edamontology.org/data_1127" ;
+            sc:name "PDB ID" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0896" ;
-            sc:name "Protein report" ;
-            sc:sameAs "http://edamontology.org/data_0896" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0896" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Protein report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0081 ;
     sc:citation <https://doi.org/10.1107/S0907444904013253>,
@@ -182039,7 +180199,7 @@ You will need to run git clone https://github.com/mbosio85/ediva.git to get eDiV
     sc:url "http://eds.bmc.uu.se/eds/" .
 
 <https://bio.tools/eduliss> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0154,
@@ -182058,7 +180218,7 @@ You will need to run git clone https://github.com/mbosio85/ediva.git to get eDiV
     biotools:primaryContact "Malcolm D. Walkinshaw" .
 
 <https://bio.tools/eeg-beats> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_3300,
         edam:topic_3335,
@@ -182072,7 +180232,7 @@ You will need to run git clone https://github.com/mbosio85/ediva.git to get eDiV
     sc:url "https://github.com/VisLab/EEG-Beats" .
 
 <https://bio.tools/eeg-dti> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0154,
@@ -182088,7 +180248,7 @@ You will need to run git clone https://github.com/mbosio85/ediva.git to get eDiV
     sc:url "https://github.com/MedicineBiology-AI/EEG-DTI" .
 
 <https://bio.tools/eegc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2229,
@@ -182106,8 +180266,23 @@ You will need to run git clone https://github.com/mbosio85/ediva.git to get eDiV
     sc:url "http://bioconductor.org/packages/release/bioc/html/eegc.html" ;
     biotools:primaryContact "Xiaoyuan Zhou" .
 
+<https://bio.tools/eegdenoisenet> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1088/1741-2552/AC2BF8>,
+        "pubmed:34596046" ;
+    sc:description "A benchmark dataset, that is suited for training and testing deep learning-based EEG denoising models, as well as for comparing the performance across different models." ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "EEGdenoiseNet" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/ncclabsustech/EEGdenoiseNet" .
+
 <https://bio.tools/eegnet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3334,
         edam:topic_3365 ;
@@ -182127,14 +180302,13 @@ You will need to run git clone https://github.com/mbosio85/ediva.git to get eDiV
 
 <https://bio.tools/eem_solver> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1463" ;
-            sc:name "Small molecule structure" ;
-            sc:sameAs "http://edamontology.org/data_1463" ] ;
+            sc:additionalType "http://edamontology.org/data_1463" ;
+            sc:name "Small molecule structure" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1917" ;
-            sc:name "Atomic property" ;
-            sc:sameAs "http://edamontology.org/data_1917" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1917" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Atomic property" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2258,
         edam:topic_3332 ;
@@ -182155,7 +180329,7 @@ You will need to run git clone https://github.com/mbosio85/ediva.git to get eDiV
     biotools:primaryContact "Radka Svobodová Vařeková" .
 
 <https://bio.tools/ef-seek> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0166,
@@ -182181,8 +180355,25 @@ You will need to run git clone https://github.com/mbosio85/ediva.git to get eDiV
     sc:url "http://ef-site.hgc.jp/eF-seek/index.jsp" ;
     biotools:primaryContact "eF-seek Support" .
 
+<https://bio.tools/efdm> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_3050 ;
+    sc:citation <https://doi.org/10.1371/JOURNAL.PONE.0264380>,
+        "pmcid:PMC9377579",
+        "pubmed:35969582" ;
+    sc:description "R package offering a scenario tool beyond forestry." ;
+    sc:featureList edam:operation_2426 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-2.0" ;
+    sc:name "EFDM" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/ec-jrc/efdm" .
+
 <https://bio.tools/efetch_gene> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:description "Retrieves Genes in the requested format from a list of one or more unique identifiers." ;
@@ -182196,7 +180387,7 @@ You will need to run git clone https://github.com/mbosio85/ediva.git to get eDiV
     sc:url "http://eutils.ncbi.nlm.nih.gov/corehtml/query/static/efetchseq_help.html" .
 
 <https://bio.tools/efetch_pmc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_3068 ;
     sc:citation <https://doi.org/10.1093/nar/gkt1146> ;
@@ -182211,7 +180402,7 @@ You will need to run git clone https://github.com/mbosio85/ediva.git to get eDiV
     sc:url "http://www.ncbi.nlm.nih.gov/books/NBK25501/" .
 
 <https://bio.tools/efetch_sequence> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:description "Retrieves sequences in requested format from a list of one or more unique identifiers." ;
@@ -182225,7 +180416,7 @@ You will need to run git clone https://github.com/mbosio85/ediva.git to get eDiV
     sc:url "http://eutils.ncbi.nlm.nih.gov/corehtml/query/static/efetch_help.html" .
 
 <https://bio.tools/efetch_snp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1093/nar/gkt1146> ;
@@ -182240,7 +180431,7 @@ You will need to run git clone https://github.com/mbosio85/ediva.git to get eDiV
     sc:url "http://www.ncbi.nlm.nih.gov/corehtml/query/static/efetchseq_help.html" .
 
 <https://bio.tools/efetch_taxon> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:description "Get taxonomy information given taxonomy ID." ;
@@ -182254,7 +180445,7 @@ You will need to run git clone https://github.com/mbosio85/ediva.git to get eDiV
     sc:url "http://www.ncbi.nlm.nih.gov/corehtml/query/static/efetchtax_help.html" .
 
 <https://bio.tools/effectR> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0780 ;
@@ -182275,7 +180466,7 @@ You will need to run git clone https://github.com/mbosio85/ediva.git to get eDiV
     sc:url "https://cran.r-project.org/package=effectR" .
 
 <https://bio.tools/effective> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0154,
@@ -182293,7 +180484,7 @@ You will need to run git clone https://github.com/mbosio85/ediva.git to get eDiV
     biotools:primaryContact "Division of Computational Systems Biology, University of Vienna" .
 
 <https://bio.tools/effective_brain_connectivity> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:citation <https://doi.org/10.1016/j.neuroimage.2021.118288> ;
     sc:description """Tools for combining structural MRI (tractography/connectome) to functional MRI
 https://doi.org/10.1016/j.neuroimage.2021.118288""" ;
@@ -182301,7 +180492,7 @@ https://doi.org/10.1016/j.neuroimage.2021.118288""" ;
     sc:url "https://github.com/alecrimi/effective_connectivity_toolbox" .
 
 <https://bio.tools/effective_shunt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3315,
         edam:topic_3322,
@@ -182318,14 +180509,14 @@ https://doi.org/10.1016/j.neuroimage.2021.118288""" ;
 
 <https://bio.tools/effectiveccbd> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0896" ;
-            sc:name "Protein report" ;
-            sc:sameAs "http://edamontology.org/data_0896" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0896" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Protein report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3510 ;
@@ -182346,14 +180537,14 @@ https://doi.org/10.1016/j.neuroimage.2021.118288""" ;
 
 <https://bio.tools/effectivedb> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0896" ;
-            sc:name "Protein report" ;
-            sc:sameAs "http://edamontology.org/data_0896" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0896" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Protein report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -182378,14 +180569,14 @@ https://doi.org/10.1016/j.neuroimage.2021.118288""" ;
 
 <https://bio.tools/effectiveeld> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0896" ;
-            sc:name "Protein report" ;
-            sc:sameAs "http://edamontology.org/data_0896" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0896" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Protein report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1093/nar/gkq1154>,
@@ -182406,18 +180597,17 @@ https://doi.org/10.1016/j.neuroimage.2021.118288""" ;
 
 <https://bio.tools/effectives346> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0896" ;
-            sc:name "Protein report" ;
-            sc:sameAs "http://edamontology.org/data_0896" ],
+            sc:additionalType "http://edamontology.org/data_0920" ;
+            sc:name "Genotype/phenotype report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0920" ;
-            sc:name "Genotype/phenotype report" ;
-            sc:sameAs "http://edamontology.org/data_0920" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0896" ;
+            sc:encodingFormat "http://edamontology.org/format_1964" ;
+            sc:name "Protein report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0797,
@@ -182439,14 +180629,14 @@ https://doi.org/10.1016/j.neuroimage.2021.118288""" ;
 
 <https://bio.tools/effectivet3> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0896" ;
-            sc:name "Protein report" ;
-            sc:sameAs "http://edamontology.org/data_0896" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0896" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Protein report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
@@ -182466,8 +180656,36 @@ https://doi.org/10.1016/j.neuroimage.2021.118288""" ;
     sc:softwareVersion "2.0.1" ;
     sc:url "http://www.effectivedb.org/method/effectivet3" .
 
+<https://bio.tools/effector-gan> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0078,
+        edam:topic_0121,
+        edam:topic_0621,
+        edam:topic_0780,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC374>,
+        "pubmed:35640972" ;
+    sc:description "Prediction of fungal effector proteins based on pretrained deep representation learning methods and generative adversarial networks." ;
+    sc:featureList edam:operation_2428,
+        edam:operation_3092,
+        edam:operation_3431,
+        edam:operation_3927 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "Effector-GAN" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://lab.malab.cn/~wys/webserver/Effector-GAN" .
+
 <https://bio.tools/efficient-approximative-multiplicationofsquare-matrices> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3361,
@@ -182483,7 +180701,7 @@ https://doi.org/10.1016/j.neuroimage.2021.118288""" ;
     biotools:primaryContact "Henrik Pagenkopf" .
 
 <https://bio.tools/efficient-b-mode-ultrasound-image-reconstruction> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -182501,7 +180719,7 @@ https://doi.org/10.1016/j.neuroimage.2021.118288""" ;
     biotools:primaryContact "Shujaat Khan" .
 
 <https://bio.tools/efin> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0634 ;
@@ -182513,7 +180731,7 @@ https://doi.org/10.1016/j.neuroimage.2021.118288""" ;
     sc:url "http://paed.hku.hk/efin/" .
 
 <https://bio.tools/efs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3071 ;
@@ -182533,14 +180751,13 @@ https://doi.org/10.1016/j.neuroimage.2021.118288""" ;
 
 <https://bio.tools/ega> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2383" ;
-            sc:name "EGA accession" ;
-            sc:sameAs "http://edamontology.org/data_2383" ] ;
+            sc:additionalType "http://edamontology.org/data_2383" ;
+            sc:name "EGA accession" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2531" ;
-            sc:name "Experiment report" ;
-            sc:sameAs "http://edamontology.org/data_2531" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2531" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Experiment report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web API",
         "Web application" ;
@@ -182564,7 +180781,7 @@ https://doi.org/10.1016/j.neuroimage.2021.118288""" ;
     sc:url "https://ega-archive.org/" .
 
 <https://bio.tools/egad> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0128 ;
@@ -182582,7 +180799,7 @@ https://doi.org/10.1016/j.neuroimage.2021.118288""" ;
     biotools:primaryContact "Sara Ballouz" .
 
 <https://bio.tools/egassembler> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0203,
@@ -182603,28 +180820,80 @@ https://doi.org/10.1016/j.neuroimage.2021.118288""" ;
     sc:url "http://egassembler.hgc.jp" ;
     biotools:primaryContact "Masoudi-Nejad A." .
 
+<https://bio.tools/egfi> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0208,
+        edam:topic_0218,
+        edam:topic_3336,
+        edam:topic_3375 ;
+    sc:citation <https://doi.org/10.1093/BIB/BBAB451>,
+        "pubmed:34791012" ;
+    sc:description "Drug-drug interaction extraction and generation with fusion of enriched entity and sentence information." ;
+    sc:featureList edam:operation_2422,
+        edam:operation_3280,
+        edam:operation_3625 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "EGFI" ;
+    sc:operatingSystem "Linux",
+        "Windows" ;
+    sc:url "https://github.com/Layne-Huang/EGFI" .
+
+<https://bio.tools/egfrindb> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:description "EGFRIndb is a literature curated database of 4581 small molecule inhibitors that have shown activity against either epidermal growth factor receptor isoforms (EGFR, ErbB2, ErbB4) or mutants of EGFR-TK domain (L858R, T790M, double mutant)." ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "egfrindb" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/egfrindb/> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/egfrindb/" .
+
+<https://bio.tools/egglib> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0199,
+        edam:topic_3056,
+        edam:topic_3796 ;
+    sc:citation <https://doi.org/10.1111/1755-0998.13672>,
+        "pubmed:35753060" ;
+    sc:description "A python package for population genetics and genomics." ;
+    sc:featureList edam:operation_3096 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "egglib" ;
+    sc:operatingSystem "Mac",
+        "Windows" ;
+    sc:softwareVersion "3.1.0" ;
+    sc:url "https://egglib.org/" .
+
 <https://bio.tools/eggnog> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1384" ;
-            sc:name "Sequence alignment (protein)" ;
-            sc:sameAs "http://edamontology.org/data_1384" ],
+            sc:additionalType "http://edamontology.org/data_1384" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment (protein)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0872" ;
-            sc:name "Phylogenetic tree" ;
-            sc:sameAs "http://edamontology.org/data_0872" ],
+            sc:additionalType "http://edamontology.org/data_0872" ;
+            sc:encodingFormat "http://edamontology.org/format_1910" ;
+            sc:name "Phylogenetic tree" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1364" ;
-            sc:name "Hidden Markov model" ;
-            sc:sameAs "http://edamontology.org/data_1364" ],
+            sc:additionalType "http://edamontology.org/data_1364" ;
+            sc:encodingFormat "http://edamontology.org/format_1369" ;
+            sc:name "Hidden Markov model" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1233" ;
-            sc:name "Sequence set (protein)" ;
-            sc:sameAs "http://edamontology.org/data_1233" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1233" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence set (protein)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3174 ;
@@ -182653,13 +180922,19 @@ https://doi.org/10.1016/j.neuroimage.2021.118288""" ;
     biotools:primaryContact <https://orcid.org/0000-0003-1429-7485> .
 
 <https://bio.tools/eggnog-mapper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3174 ;
-    sc:citation <https://doi.org/10.1093/nar/gkw989>,
+    sc:citation <https://doi.org/10.1093/molbev/msab293>,
+        <https://doi.org/10.1093/molbev/msx148>,
+        <https://doi.org/10.1093/nar/gkw989>,
         "pmcid:PMC5210662",
-        "pubmed:28053165" ;
+        "pmcid:PMC5850834",
+        "pmcid:PMC8662613",
+        "pubmed:28053165",
+        "pubmed:28460117",
+        "pubmed:34597405" ;
     sc:description """For fast functional annotation of novel sequences. It uses precomputed orthologous groups and phylogenies from the eggNOG database to transfer functional information from fine-grained orthologs only. Its common uses include the annotation of novel genomes, transcriptomes or even metagenomic gene catalogs.
 
 The use of orthology predictions for functional annotation permits a higher precision than traditional homology searches, as it avoids transferring annotations from close paralogs.""" ;
@@ -182679,7 +180954,7 @@ The use of orthology predictions for functional annotation permits a higher prec
         "Georg Zeller" .
 
 <https://bio.tools/eggnog-mapper-v2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0084,
@@ -182700,7 +180975,7 @@ The use of orthology predictions for functional annotation permits a higher prec
         <https://orcid.org/0000-0003-4195-5025> .
 
 <https://bio.tools/eggtart> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0203,
@@ -182717,16 +180992,31 @@ The use of orthology predictions for functional annotation permits a higher prec
     sc:url "https://github.com/songlab-cal/eggtart" ;
     biotools:primaryContact "Yun S. Song" .
 
+<https://bio.tools/egio> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0625,
+        edam:topic_3308,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC548>,
+        "pubmed:35946527" ;
+    sc:description "EGIO (Exon Group Ideogram based detection of Orthologous exons and Orthologous isoforms) is aimed to detect orthologous exons and isoforms within pre-defined orthologous gene pairs." ;
+    sc:featureList edam:operation_0446 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "EGIO" ;
+    sc:operatingSystem "Linux",
+        "Mac" ;
+    sc:url "https://github.com/wu-lab-egio/EGIO" .
+
 <https://bio.tools/egmrg> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2299" ;
-            sc:name "Gene name" ;
-            sc:sameAs "http://edamontology.org/data_2299" ] ;
+            sc:additionalType "http://edamontology.org/data_2299" ;
+            sc:name "Gene name" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Gene expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:name "Gene expression data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0203 ;
     sc:citation <https://doi.org/10.1136/gutjnl-2011-301104> ;
@@ -182741,7 +181031,7 @@ The use of orthology predictions for functional annotation permits a higher prec
     sc:url "http://microbiota.wall.gu.se/" .
 
 <https://bio.tools/ego_viii> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0176,
         edam:topic_2275 ;
@@ -182754,8 +181044,43 @@ The use of orthology predictions for functional annotation permits a higher prec
     sc:softwareHelp <http://www.mpibpc.mpg.de/273738/ego-manual.ps> ;
     sc:url "http://www.mpibpc.mpg.de/273454/04-EGO_VIII" .
 
+<https://bio.tools/egpred> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:citation <https://doi.org/10.1101/gr.2524704>,
+        "pmcid:PMC515322",
+        "pubmed:15342559" ;
+    sc:description "EGPred implements a new strategy where the specificity is maintained while the sensitivity is increased on combining ab initio predictions with BLASTX exons that are filtered using criteria such as length of HSP alignment, percent identity, score, expectation value, and similarity to intron sequences." ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "egpred" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/egpred/> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/egpred/" .
+
+<https://bio.tools/egreenhouse> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Desktop application" ;
+    sc:applicationSubCategory edam:topic_0196,
+        edam:topic_0625,
+        edam:topic_3810 ;
+    sc:citation <https://doi.org/10.1016/J.OHX.2021.E00193>,
+        "pmcid:PMC9041245",
+        "pubmed:35492037" ;
+    sc:description "eGreenhouse is a lightweight and low-cost greenhouse sensor package integrated with the OPEnS HyperRail." ;
+    sc:featureList edam:operation_0310 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "eGreenhouse" ;
+    sc:operatingSystem "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://github.com/OPEnSLab-OSU/eGreenHouse/wiki> ;
+    sc:url "https://github.com/OPEnSLab-OSU/eGreenhouse" .
+
 <https://bio.tools/egret> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0128,
@@ -182773,7 +181098,7 @@ The use of orthology predictions for functional annotation permits a higher prec
     sc:url "https://github.com/Sazan-Mahbub/EGAT" .
 
 <https://bio.tools/egs_brachy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3071,
         edam:topic_3318,
         edam:topic_3382 ;
@@ -182788,14 +181113,14 @@ The use of orthology predictions for functional annotation permits a higher prec
 
 <https://bio.tools/egsea> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3112" ;
-            sc:name "Gene expression matrix" ;
-            sc:sameAs "http://edamontology.org/data_3112" ] ;
+            sc:additionalType "http://edamontology.org/data_3112" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Gene expression matrix" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2093" ;
-            sc:name "Data reference" ;
-            sc:sameAs "http://edamontology.org/data_2093" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2093" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Data reference" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2259 ;
@@ -182814,7 +181139,7 @@ The use of orthology predictions for functional annotation permits a higher prec
     biotools:primaryContact <http://orcid.org/0000-0002-2411-1325> .
 
 <https://bio.tools/egygene-gelanalyzer4> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_2885,
         edam:topic_3293,
@@ -182836,14 +181161,12 @@ The use of orthology predictions for functional annotation permits a higher prec
 
 <https://bio.tools/ehecregnet> a sc:SoftwareApplication ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ],
+            sc:additionalType "http://edamontology.org/data_0842" ;
+            sc:name "Identifier" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0842" ;
-            sc:name "Identifier" ;
-            sc:sameAs "http://edamontology.org/data_0842" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:name "Sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0102 ;
     sc:citation <https://doi.org/10.1039/c2ib00132b>,
@@ -182860,8 +181183,29 @@ The use of orthology predictions for functional annotation permits a higher prec
     sc:url "https://ehecregnet.compbio.sdu.dk/v2/index.html" ;
     biotools:primaryContact <http://orcid.org/0000-0002-0282-0462> .
 
+<https://bio.tools/ehooke> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workbench" ;
+    sc:applicationSubCategory edam:topic_0621,
+        edam:topic_0625,
+        edam:topic_2229,
+        edam:topic_3382 ;
+    sc:citation <https://doi.org/10.1017/S2633903X21000027>,
+        "pmcid:PMC8724265",
+        "pubmed:35036921" ;
+    sc:description "A tool for automated image analysis of spherical bacteria based on cell cycle progression." ;
+    sc:featureList edam:operation_3443,
+        edam:operation_3454,
+        edam:operation_3799 ;
+    sc:isAccessibleForFree true ;
+    sc:name "eHooke" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/BacterialCellBiologyLab/eHooke" .
+
 <https://bio.tools/ehreact> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_0821,
@@ -182877,30 +181221,27 @@ A Python package for extracting and scoring reaction templates based on extended
 
 <https://bio.tools/ehrtemporalvariability> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3861" ;
-            sc:name "Electronic health record" ;
-            sc:sameAs "http://edamontology.org/data_3861" ],
+            sc:additionalType "http://edamontology.org/data_3861" ;
+            sc:encodingFormat "http://edamontology.org/format_3751" ;
+            sc:name "Electronic health record" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2082" ;
-            sc:name "Matrix" ;
-            sc:sameAs "http://edamontology.org/data_2082" ],
+            sc:additionalType "http://edamontology.org/data_2082" ;
+            sc:name "Matrix" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2855" ;
-            sc:name "Distance matrix" ;
-            sc:sameAs "http://edamontology.org/data_2855" ] ;
+            sc:additionalType "http://edamontology.org/data_2855" ;
+            sc:encodingFormat "http://edamontology.org/format_2333" ;
+            sc:name "Distance matrix" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1636" ;
-            sc:name "Heat map" ;
-            sc:sameAs "http://edamontology.org/data_1636" ],
+            sc:additionalType "http://edamontology.org/data_3914" ;
+            sc:name "Quality control report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3914" ;
-            sc:name "Quality control report" ;
-            sc:sameAs "http://edamontology.org/data_3914" ],
+            sc:additionalType "http://edamontology.org/data_3870" ;
+            sc:encodingFormat "http://edamontology.org/format_2333" ;
+            sc:name "Trajectory data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3870" ;
-            sc:name "Trajectory data" ;
-            sc:sameAs "http://edamontology.org/data_3870" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1636" ;
+            sc:name "Heat map" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Web application",
         "Workflow" ;
@@ -182934,7 +181275,7 @@ A Python package for extracting and scoring reaction templates based on extended
     biotools:primaryContact <https://orcid.org/0000-0003-2678-8249> .
 
 <https://bio.tools/ehscpr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3474 ;
@@ -182951,14 +181292,14 @@ A Python package for extracting and scoring reaction templates based on extended
     biotools:primaryContact <https://orcid.org/0000-0002-6065-7835> .
 
 <https://bio.tools/eido-python-package> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "eido is the official Python package for validating Portable Encapsulated Projects or PEPs in Python." ;
     sc:name "eido" ;
     sc:softwareVersion "0.1.5" ;
     sc:url "http://eido.databio.org/" .
 
 <https://bio.tools/eigendel> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3168,
         edam:topic_3175,
@@ -182973,7 +181314,7 @@ A Python package for extracting and scoring reaction templates based on extended
     sc:url "https://github.com/lxwgcool/EigenDel" .
 
 <https://bio.tools/eigensoft> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3056 ;
     sc:description "Combindes functionality from population genetics methods (Patterson et al. 2006) and the EIGENSTRAT correection method (Price et al. 2006). The EIGENSTRAT methods uses principal component analysis to model ancestry differences between cases and controls along continuous axes of variation. The resulting correction is specific to a candidate markers variation in frequency across ancestral populations, minimizing spurious associations while maximising power to detect true associations." ;
@@ -182986,18 +181327,15 @@ A Python package for extracting and scoring reaction templates based on extended
 
 <https://bio.tools/einverted> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2887" ;
-            sc:name "Nucleic acid sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2887" ] ;
+            sc:additionalType "http://edamontology.org/data_2887" ;
+            sc:name "Nucleic acid sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ],
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:name "Report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0157 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -183028,7 +181366,7 @@ A Python package for extracting and scoring reaction templates based on extended
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/einverted.html" .
 
 <https://bio.tools/eip> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3382,
         edam:topic_3474 ;
@@ -183042,26 +181380,26 @@ A Python package for extracting and scoring reaction templates based on extended
 
 <https://bio.tools/eir> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0990" ;
-            sc:name "Compound name" ;
-            sc:sameAs "http://edamontology.org/data_0990" ],
+            sc:additionalType "http://edamontology.org/data_1463" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Small molecule structure" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1086" ;
-            sc:name "Compound identifier" ;
-            sc:sameAs "http://edamontology.org/data_1086" ],
+            sc:additionalType "http://edamontology.org/data_0990" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Compound name" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1463" ;
-            sc:name "Small molecule structure" ;
-            sc:sameAs "http://edamontology.org/data_1463" ] ;
+            sc:additionalType "http://edamontology.org/data_1086" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Compound identifier" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2080" ;
-            sc:name "Database search results" ;
-            sc:sameAs "http://edamontology.org/data_2080" ],
+            sc:additionalType "http://edamontology.org/data_1463" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Small molecule structure" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1463" ;
-            sc:name "Small molecule structure" ;
-            sc:sameAs "http://edamontology.org/data_1463" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2080" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Database search results" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0081,
@@ -183082,7 +181420,7 @@ A Python package for extracting and scoring reaction templates based on extended
     biotools:primaryContact "Thomas Girke" .
 
 <https://bio.tools/eisa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203 ;
@@ -183101,7 +181439,7 @@ A Python package for extracting and scoring reaction templates based on extended
     biotools:primaryContact "Gabor Csardi" .
 
 <https://bio.tools/eit-mesher> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0769,
@@ -183112,17 +181450,33 @@ A Python package for extracting and scoring reaction templates based on extended
     sc:name "EIT-MESHER" ;
     sc:url "https://github.com/EIT-team/Mesher" .
 
-<https://bio.tools/elPrep_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3372 ;
-    sc:citation <https://doi.org/10.1177/1176934319869015>,
-        "pmcid:PMC6698987",
-        "pubmed:31452597" ;
-    sc:description "> LOW CONFIDENCE! | > HOMEPAGE MISSING! | > NAME EQUAL TO (PUB. DIFFERENT) bio.tools/elprep | Comparing Ease of Programming in C++, Go, and Java for Implementing a Next-Generation Sequencing Tool | elPrep is an extensible multithreaded software framework for efficiently processing Sequence Alignment Map (SAM) Binary Alignment Map (BAM) files in next-generation sequencing pipelines. Similar to other SAM BAM tools, a key challenge in elPrep is memory management, as such programs need to manipulate large amounts of data. We therefore investigated 3 programming languages with support for assisted or automated memory management for implementing elPrep, namely C++, Go, and Java. We implemented a nontrivial subset of elPrep in all 3 programming languages and compared them by benchmarking their runtime performance and memory use to determine the best language in terms of computational performance" ;
-    sc:name "elPrep_autogenerated" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31452597" .
+<https://bio.tools/el-rmlocnet> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0634,
+        edam:topic_0659,
+        edam:topic_3474,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.1016/J.CSBJ.2022.07.031>,
+        "pmcid:PMC9356161",
+        "pubmed:35983235" ;
+    sc:description "An explainable LSTM network for RNA-associated multi-compartment localization prediction." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_2441,
+        edam:operation_2489,
+        edam:operation_3927,
+        edam:operation_3935 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Other" ;
+    sc:name "EL-RMLocNet" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://sds_genetic_analysis.opendfki.de/subcellular_loc/" .
 
 <https://bio.tools/el_pssm-rt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3474 ;
@@ -183138,7 +181492,7 @@ A Python package for extracting and scoring reaction templates based on extended
     biotools:primaryContact "Ruifeng Xu" .
 
 <https://bio.tools/elaborator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3379 ;
     sc:citation <https://doi.org/10.1007/S43441-021-00318-4>,
@@ -183155,7 +181509,7 @@ A Python package for extracting and scoring reaction templates based on extended
     sc:url "https://cran.r-project.org/package=elaborator" .
 
 <https://bio.tools/eland> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0199,
@@ -183176,7 +181530,7 @@ A Python package for extracting and scoring reaction templates based on extended
     biotools:primaryContact "Support" .
 
 <https://bio.tools/elastic> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1109/IPDPSW.2014.63> ;
@@ -183189,7 +181543,7 @@ A Python package for extracting and scoring reaction templates based on extended
     sc:url "http://www.cse.buffalo.edu/~jzola/elastic/" .
 
 <https://bio.tools/elastix> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_2640,
         edam:topic_3384 ;
@@ -183216,7 +181570,7 @@ elastix is open source software, based on the well-known Insight Segmentation an
     sc:url "http://elastix.isi.uu.nl" .
 
 <https://bio.tools/elastodb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -183238,7 +181592,7 @@ elastix is open source software, based on the well-known Insight Segmentation an
     biotools:primaryContact "Dr. John Parkinson" .
 
 <https://bio.tools/elastogui> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -183256,22 +181610,22 @@ elastix is open source software, based on the well-known Insight Segmentation an
 
 <https://bio.tools/elbow> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0928" ;
-            sc:name "Gene expression profile" ;
-            sc:sameAs "http://edamontology.org/data_0928" ] ;
+            sc:additionalType "http://edamontology.org/data_0928" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Gene expression profile" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1772" ;
-            sc:name "Score" ;
-            sc:sameAs "http://edamontology.org/data_1772" ],
+            sc:additionalType "http://edamontology.org/data_1772" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Score" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ],
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Plot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1669" ;
-            sc:name "P-value" ;
-            sc:sameAs "http://edamontology.org/data_1669" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1669" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "P-value" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -183291,8 +181645,26 @@ elastix is open source software, based on the well-known Insight Segmentation an
     biotools:primaryContact "Graham Alvare",
         "Xiangli Zhang" .
 
+<https://bio.tools/eldbeta> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_3071,
+        edam:topic_3382,
+        edam:topic_3678 ;
+    sc:citation <https://doi.org/10.1038/S41597-022-01372-9>,
+        "pmcid:PMC9156785",
+        "pubmed:35641547" ;
+    sc:description "A large eldercare-oriented BEnchmark database of SSVEP-BCI for The Aging population (eldBETA)" ;
+    sc:featureList edam:operation_0337 ;
+    sc:license "CC-BY-4.0" ;
+    sc:name "eldBETA" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://doi.org/10.6084/m9.figshare.18032669" .
+
 <https://bio.tools/elector> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0769 ;
@@ -183310,7 +181682,7 @@ elastix is open source software, based on the well-known Insight Segmentation an
     biotools:primaryContact "Camille Marchet" .
 
 <https://bio.tools/electrical-impedance-tomography-image-reconstruction-eidors> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -183327,7 +181699,7 @@ elastix is open source software, based on the well-known Insight Segmentation an
     biotools:primaryContact "Sathyanarayan Rao" .
 
 <https://bio.tools/electrical-resistivity-tomography-geometric-factors> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -183343,7 +181715,7 @@ elastix is open source software, based on the well-known Insight Segmentation an
     biotools:primaryContact "Sathyanarayan Rao" .
 
 <https://bio.tools/electroactive_hydrogels> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_3395,
         edam:topic_3399,
@@ -183358,7 +181730,7 @@ elastix is open source software, based on the well-known Insight Segmentation an
     sc:url "https://github.com/arfarooqi/Electro-active-hydrogels" .
 
 <https://bio.tools/electromyographic-signal-analysis-tool> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3382 ;
     sc:description "Accepts 1 channel EMG and finds number, amplitude, maximum, and duration of contraction periods." ;
@@ -183372,7 +181744,7 @@ elastix is open source software, based on the well-known Insight Segmentation an
     biotools:primaryContact "Michala" .
 
 <https://bio.tools/electronic_pcr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0611,
@@ -183389,8 +181761,25 @@ elastix is open source software, based on the well-known Insight Segmentation an
     sc:name "Electronic PCR" ;
     sc:url "http://www.ncbi.nlm.nih.gov/sutils/e-pcr" .
 
+<https://bio.tools/elefhant> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_2229,
+        edam:topic_3170,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1101/2021.09.07.459342> ;
+    sc:description "A supervised machine learning approach for label harmonization and annotation of single cell RNA-seq data." ;
+    sc:featureList edam:operation_0224 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "ELeFHAnt" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/praneet1988/ELeFHAnt" .
+
 <https://bio.tools/elephant> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Suite" ;
     sc:applicationSubCategory edam:topic_3300,
@@ -183403,7 +181792,7 @@ elastix is open source software, based on the well-known Insight Segmentation an
     sc:url "https://elephant.readthedocs.io/en/latest/index.html" .
 
 <https://bio.tools/elephant-cell> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3382,
         edam:topic_3383 ;
@@ -183418,8 +181807,27 @@ elastix is open source software, based on the well-known Insight Segmentation an
     sc:url "https://elephant-track.github.io/" ;
     biotools:primaryContact <https://orcid.org/0000-0002-6803-7251> .
 
+<https://bio.tools/elf-dpc> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workbench" ;
+    sc:applicationSubCategory edam:topic_0128,
+        edam:topic_2229,
+        edam:topic_3474,
+        edam:topic_3957 ;
+    sc:citation <https://doi.org/10.3389/FGENE.2022.839949>,
+        "pmcid:PMC8908451",
+        "pubmed:35281831" ;
+    sc:description "An Ensemble Learning Framework for Detecting Protein Complexes From PPI Networks." ;
+    sc:featureList edam:operation_2476,
+        edam:operation_2492,
+        edam:operation_3096 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "ELF-DPC" ;
+    sc:url "https://github.com/RongquanWang/ELF-DPC" .
+
 <https://bio.tools/elfin> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Library",
         "Suite" ;
@@ -183440,7 +181848,7 @@ elastix is open source software, based on the well-known Insight Segmentation an
     sc:url "https://github.com/Parmeggiani-Lab/elfin" .
 
 <https://bio.tools/elihksir> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0154,
         edam:topic_0160,
@@ -183458,12 +181866,36 @@ elastix is open source software, based on the well-known Insight Segmentation an
     sc:url "https://elihksir.org" ;
     biotools:primaryContact <https://orcid.org/0000-0001-6208-1561> .
 
+<https://bio.tools/elixir-a> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Plug-in" ;
+    sc:applicationSubCategory edam:topic_0202,
+        edam:topic_0209,
+        edam:topic_2275,
+        edam:topic_3343,
+        edam:topic_3373 ;
+    sc:citation <https://doi.org/10.1021/ACSOMEGA.1C07144>,
+        "pmcid:PMC9025992",
+        "pubmed:35474832" ;
+    sc:description "Enhanced Ligand Exploration and Interaction Recognition Algorithm (ELIXIR-A). ELIXIR-A, a plugin in VMD, can find similarities in the active site of the receptor under study compared to other receptors." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_2425,
+        edam:operation_3938 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Apache-2.0" ;
+    sc:name "ELIXIR-A" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareVersion "2.1" ;
+    sc:url "https://github.com/sfernando-BAEN/ELIXIR-A/releases" .
+
 <https://bio.tools/elixir_elearning_portal> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_2259,
@@ -183485,7 +181917,7 @@ elastix is open source software, based on the well-known Insight Segmentation an
     sc:url "https://elixir.mf.uni-lj.si" .
 
 <https://bio.tools/elliptrack> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_2229,
         edam:topic_3382 ;
@@ -183499,7 +181931,7 @@ elastix is open source software, based on the well-known Insight Segmentation an
     sc:url "http://github.com/tianchengzhe/EllipTrack" .
 
 <https://bio.tools/elm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0160,
@@ -183525,18 +181957,18 @@ elastix is open source software, based on the well-known Insight Segmentation an
 
 <https://bio.tools/elmer> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Gene expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ],
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_2058" ;
+            sc:name "Gene expression data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3273" ;
-            sc:name "Sample ID" ;
-            sc:sameAs "http://edamontology.org/data_3273" ] ;
+            sc:additionalType "http://edamontology.org/data_3273" ;
+            sc:encodingFormat "http://edamontology.org/format_2058" ;
+            sc:name "Sample ID" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -183556,7 +181988,7 @@ elastix is open source software, based on the well-known Insight Segmentation an
     biotools:primaryContact "Simon Coetzee" .
 
 <https://bio.tools/elmeri> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0196 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btz663>,
         "pmcid:PMC7005598",
@@ -183570,7 +182002,7 @@ elastix is open source software, based on the well-known Insight Segmentation an
     sc:url "https://github.com/LeenaSalmela/Elmeri" .
 
 <https://bio.tools/elminstancemapper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0160 ;
@@ -183586,7 +182018,7 @@ elastix is open source software, based on the well-known Insight Segmentation an
     sc:url "http://api.bioinfo.no/wsdl/ELMInstanceMapper.wsdl" .
 
 <https://bio.tools/elmmatcher> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0160 ;
@@ -183602,7 +182034,7 @@ elastix is open source software, based on the well-known Insight Segmentation an
     sc:url "http://api.bioinfo.no/wsdl/ELMMatcher.wsdl" .
 
 <https://bio.tools/elmmo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_3308 ;
@@ -183616,7 +182048,7 @@ elastix is open source software, based on the well-known Insight Segmentation an
     biotools:primaryContact "Mihaela Zavolan" .
 
 <https://bio.tools/elmsi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_2885,
@@ -183633,7 +182065,7 @@ elastix is open source software, based on the well-known Insight Segmentation an
     sc:url "https://github.com/YixuanWang1120/ELMSI" .
 
 <https://bio.tools/elnemo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0176,
@@ -183657,7 +182089,7 @@ elastix is open source software, based on the well-known Insight Segmentation an
     biotools:primaryContact "Yves-Henri Sanejouand" .
 
 <https://bio.tools/elochoice> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3569 ;
     sc:citation <https://doi.org/10.1371/journal.pone.0190393> ;
@@ -183672,7 +182104,7 @@ elastix is open source software, based on the well-known Insight Segmentation an
     biotools:primaryContact "Christof Neumann" .
 
 <https://bio.tools/eloper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0196 ;
@@ -183688,7 +182120,7 @@ elastix is open source software, based on the well-known Insight Segmentation an
     sc:url "http://sourceforge.net/projects/eloper/" .
 
 <https://bio.tools/elp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0821,
         edam:topic_3047,
@@ -183704,7 +182136,7 @@ elastix is open source software, based on the well-known Insight Segmentation an
     sc:url "https://github.com/HassounLab/ELP" .
 
 <https://bio.tools/elprep> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0199,
@@ -183723,7 +182155,7 @@ elastix is open source software, based on the well-known Insight Segmentation an
     sc:url "https://github.com/ExaScience/elprep" .
 
 <https://bio.tools/elsa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_2259,
@@ -183738,8 +182170,24 @@ elastix is open source software, based on the well-known Insight Segmentation an
     sc:url "http://meta.usc.edu/softs/lsa/" ;
     biotools:primaryContact "Fengzhu Sun" .
 
+<https://bio.tools/elssi> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_2885,
+        edam:topic_3474,
+        edam:topic_3517,
+        edam:topic_3520 ;
+    sc:citation <https://doi.org/10.1093/BIB/BBAC213>,
+        "pubmed:35696639" ;
+    sc:description "Ensemble learning-based approach (ELSSI): parallel SNP-SNP interactions detection by ensemble multi-type detectors." ;
+    sc:featureList edam:operation_0484,
+        edam:operation_3196,
+        edam:operation_3661 ;
+    sc:name "ELSSI" ;
+    sc:url "https://www.sdu-idea.cn/codes.php?name=ELSSI" .
+
 <https://bio.tools/eltetrado> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0160,
@@ -183760,7 +182208,7 @@ elastix is open source software, based on the well-known Insight Segmentation an
     sc:url "https://github.com/tzok/eltetrado" .
 
 <https://bio.tools/elviz> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0196,
@@ -183779,7 +182227,7 @@ elastix is open source software, based on the well-known Insight Segmentation an
     biotools:primaryContact "Contact form (Comments / Questions)" .
 
 <https://bio.tools/em-stellar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0611,
         edam:topic_3474 ;
@@ -183794,7 +182242,7 @@ elastix is open source software, based on the well-known Insight Segmentation an
     biotools:primaryContact <https://orcid.org/0000-0002-5509-402X> .
 
 <https://bio.tools/emage> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3067,
@@ -183819,12 +182267,15 @@ elastix is open source software, based on the well-known Insight Segmentation an
     biotools:primaryContact "EMAGE Support" .
 
 <https://bio.tools/eman> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0611,
         edam:topic_3307,
         edam:topic_3382 ;
-    sc:citation "pubmed:16859925" ;
+    sc:citation <https://doi.org/10.1006/jsbi.1999.4174>,
+        <https://doi.org/10.1016/j.jsb.2006.05.009>,
+        "pubmed:10600563",
+        "pubmed:16859925" ;
     sc:description "A scientific image processing package with a particular focus on single particle reconstruction from transmission electron microscopy (TEM) images. he suite now also offers support for single particle cryo-ET, and tools useful in many other subdisciplines such as helical reconstruction, 2-D crystallography and whole-cell tomography." ;
     sc:featureList edam:operation_0297,
         edam:operation_3457,
@@ -183839,14 +182290,13 @@ elastix is open source software, based on the well-known Insight Segmentation an
 
 <https://bio.tools/emap> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1149" ;
-            sc:name "EMAGE ID" ;
-            sc:sameAs "http://edamontology.org/data_1149" ] ;
+            sc:additionalType "http://edamontology.org/data_1149" ;
+            sc:name "EMAGE ID" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1713" ;
-            sc:name "Fate map" ;
-            sc:sameAs "http://edamontology.org/data_1713" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1713" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Fate map" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_3067 ;
@@ -183862,7 +182312,7 @@ elastix is open source software, based on the well-known Insight Segmentation an
     sc:url "http://www.emouseatlas.org/emap/home.html" .
 
 <https://bio.tools/emase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_3170,
@@ -183880,7 +182330,7 @@ elastix is open source software, based on the well-known Insight Segmentation an
     biotools:primaryContact "Gary A Churchill" .
 
 <https://bio.tools/ematchsite> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0081,
@@ -183899,34 +182349,23 @@ elastix is open source software, based on the well-known Insight Segmentation an
     sc:url "http://brylinski.cct.lsu.edu/ematchsite" ;
     biotools:primaryContact "Brylinski M." .
 
-<https://bio.tools/embeddings_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0218,
-        edam:topic_3063,
-        edam:topic_3303,
-        edam:topic_3474 ;
-    sc:citation "pmcid:PMC6922053",
-        "pubmed:31797605" ;
-    sc:description """Clinical Concept Embeddings Learned from Massive Sources of Multimodal Medical Data.
-
-Code for AMIA CRI 2016 paper "Learning Low-Dimensional Representations of Medical Concepts".
-
-This repository contains code accompanying publication of the paper:.
-
-In the base directory there are three files containing the two best 300-dimensional embeddings learned in the paper, and the embeddings used in the previous work which we compared to:.
-
-Y. Choi, Y. Chiu, D. Sontag. Learning Low-Dimensional Representations of Medical Concepts. To appear in Proceedings of the AMIA Summit on Clinical Research Informatics (CRI), 2016.
-
-||| NAME (embeddings) SIMILAR TO (PUB. DIFFERENT) bio.tools/Embeddings (Embeddings).
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'cui2vec', 'cui2vec embeddings', 'attains'""" ;
-    sc:featureList edam:operation_3280,
-        edam:operation_3435,
-        edam:operation_3625 ;
-    sc:name "embeddings_autogenerated" ;
-    sc:url "https://github.com/clinicalml/embeddings" .
+<https://bio.tools/embedseg> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_3303,
+        edam:topic_3382 ;
+    sc:citation <https://doi.org/10.1016/J.MEDIA.2022.102523>,
+        "pubmed:35926335" ;
+    sc:description "EmbedSeg, an embedding-based instance segmentation method designed to segment instances of desired objects visible in 2D or 3D biomedical image data." ;
+    sc:featureList edam:operation_0337 ;
+    sc:license "CC-BY-NC-4.0" ;
+    sc:name "EmbedSeg" ;
+    sc:operatingSystem "Linux" ;
+    sc:softwareHelp <https://github.com/juglab/EmbedSeg/wiki> ;
+    sc:url "https://github.com/juglab/EmbedSeg" .
 
 <https://bio.tools/embedsom> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_2229,
@@ -183952,7 +182391,7 @@ Y. Choi, Y. Chiu, D. Sontag. Learning Low-Dimensional Representations of Medical
     biotools:primaryContact "Miroslav Kratochvíl" .
 
 <https://bio.tools/ember> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0160,
@@ -183968,7 +182407,7 @@ Y. Choi, Y. Chiu, D. Sontag. Learning Low-Dimensional Representations of Medical
     sc:url "https://github.com/gomezlab/EMBER" .
 
 <https://bio.tools/embf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0102 ;
     sc:citation "pubmed:19208116" ;
@@ -183979,14 +182418,14 @@ Y. Choi, Y. Chiu, D. Sontag. Learning Low-Dimensional Representations of Medical
 
 <https://bio.tools/emblmygff3> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ] ;
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:encodingFormat "http://edamontology.org/format_2305" ;
+            sc:name "Sequence features" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:encodingFormat "http://edamontology.org/format_1927" ;
+            sc:name "Sequence features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0219 ;
     sc:citation <https://doi.org/10.1186/s13104-018-3686-x>,
@@ -184006,7 +182445,7 @@ Y. Choi, Y. Chiu, D. Sontag. Learning Low-Dimensional Representations of Medical
     biotools:primaryContact "Jacques Dainat" .
 
 <https://bio.tools/emblread> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3374 ;
     sc:description "A modified version of EMBLRead for Reading a EMBL file into a Matlab structure much faster" ;
@@ -184020,7 +182459,7 @@ Y. Choi, Y. Chiu, D. Sontag. Learning Low-Dimensional Representations of Medical
     biotools:primaryContact "Xindong Song" .
 
 <https://bio.tools/emboss> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -184043,10 +182482,9 @@ Y. Choi, Y. Chiu, D. Sontag. Learning Low-Dimensional Representations of Medical
 
 <https://bio.tools/embossdata> a sc:SoftwareApplication ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0957" ;
-            sc:name "Database metadata" ;
-            sc:sameAs "http://edamontology.org/data_0957" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0957" ;
+            sc:name "Database metadata" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -184078,10 +182516,9 @@ Y. Choi, Y. Chiu, D. Sontag. Learning Low-Dimensional Representations of Medical
 
 <https://bio.tools/embossupdate> a sc:SoftwareApplication ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0958" ;
-            sc:name "Tool metadata" ;
-            sc:sameAs "http://edamontology.org/data_0958" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0958" ;
+            sc:name "Tool metadata" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -184112,10 +182549,9 @@ Y. Choi, Y. Chiu, D. Sontag. Learning Low-Dimensional Representations of Medical
 
 <https://bio.tools/embossversion> a sc:SoftwareApplication ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0958" ;
-            sc:name "Tool metadata" ;
-            sc:sameAs "http://edamontology.org/data_0958" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0958" ;
+            sc:name "Tool metadata" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -184144,8 +182580,29 @@ Y. Choi, Y. Chiu, D. Sontag. Learning Low-Dimensional Representations of Medical
     sc:softwareVersion "r6" ;
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/embossversion.html" .
 
+<https://bio.tools/emcbow-gpcr> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application",
+        "Workbench" ;
+    sc:applicationSubCategory edam:topic_0218,
+        edam:topic_0623,
+        edam:topic_0820 ;
+    sc:citation <https://doi.org/10.1016/J.CSBJ.2021.08.044>,
+        "pmcid:PMC8437786",
+        "pubmed:34527200" ;
+    sc:description "A method for identifying G-protein coupled receptors based on word embedding and wordbooks." ;
+    sc:featureList edam:operation_0269,
+        edam:operation_2995,
+        edam:operation_3937 ;
+    sc:isAccessibleForFree true ;
+    sc:name "EMCBOW-GPCR" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/454170054/EMCBOW-GPCR" .
+
 <https://bio.tools/emdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0611 ;
@@ -184159,20 +182616,65 @@ Y. Choi, Y. Chiu, D. Sontag. Learning Low-Dimensional Representations of Medical
     sc:softwareHelp <http://www-ebi.emdatabank.org/faq.html> ;
     sc:url "https://www.ebi.ac.uk/pdbe/emdb/" .
 
+<https://bio.tools/emdlp> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0099,
+        edam:topic_0218,
+        edam:topic_3170,
+        edam:topic_3474,
+        edam:topic_3674 ;
+    sc:citation <https://doi.org/10.1186/S12859-022-04756-1>,
+        "pmcid:PMC9178860",
+        "pubmed:35676633" ;
+    sc:description "An ensemble multiscale deep learning predictor (EMDLP) to identify RNA methylation sites in NLP and DL way." ;
+    sc:featureList edam:operation_0417,
+        edam:operation_2441,
+        edam:operation_3927,
+        edam:operation_3937 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "EMDLP" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://47.104.130.81/EMDLP/index.php" .
+
+<https://bio.tools/emdna> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Desktop application" ;
+    sc:applicationSubCategory edam:topic_0097,
+        edam:topic_0128,
+        edam:topic_0176,
+        edam:topic_0654,
+        edam:topic_3306 ;
+    sc:citation <https://doi.org/10.1016/J.JMB.2022.167558>,
+        "pubmed:35341743" ;
+    sc:description "emDNA is a C++ software for minimizing the energy of DNA or DNA+proteins complexes. It can handle various geometrical constraints (e.g. fixed end-to-end distance and/or rotation) and can be used to simulate opened or closed DNA fragments." ;
+    sc:featureList edam:operation_0481,
+        edam:operation_2476 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "emDNA" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://nicocvn.github.io/emDNA/" .
+
 <https://bio.tools/emdomics> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0928" ;
-            sc:name "Gene expression profile" ;
-            sc:sameAs "http://edamontology.org/data_0928" ] ;
+            sc:additionalType "http://edamontology.org/data_0928" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Gene expression profile" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1772" ;
-            sc:name "Score" ;
-            sc:sameAs "http://edamontology.org/data_1772" ],
+            sc:additionalType "http://edamontology.org/data_1772" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Score" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -184193,8 +182695,35 @@ Y. Choi, Y. Chiu, D. Sontag. Learning Low-Dimensional Representations of Medical
     biotools:primaryContact "Daniel Schmolze",
         "Sadhika Malladi" .
 
+<https://bio.tools/emerald_metagenomics_annotations_pipeline> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0091,
+        edam:topic_3174,
+        edam:topic_3473,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.21203/rs.3.rs-1396476/v1> ;
+    sc:description "Metagenomics is a culture-independent method for studying the microbes inhabiting a particular environment. Comparing the composition of samples (functionally/taxonomically), either from a longitudinal study or cross-sectional studies can provide clues into how the microbiota has adapted to the environment. However, a recurring challenge is that key metadata about the sample and molecular methods used to extract and sequence the genetic material are often missing from sequence records, making it difficult to account for confounding factors. Nevertheless, this missing metadata may be found in the narrative of publications describing the research. This respository offers a new metagenomics annotations pipeline that regularly enrich up-to-date ENA and MGnify metagenomics studies with metadata extracted from research articles in EuropePMC. These metadata are now available for researchers to explore and retrieve in the MGnify and Europe PMC websites, and Europe PMC annotations API." ;
+    sc:isAccessibleForFree true ;
+    sc:license "Apache-2.0" ;
+    sc:name "EMERALD METAGENOMICS ANNOTATIONS PIPELINE" ;
+    sc:operatingSystem "Linux" ;
+    sc:url "https://gitlab.com/maaly7/emerald_metagenomics_annotations" .
+
+<https://bio.tools/emews> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:citation <https://doi.org/10.1039/C9ME00036D>,
+        <https://doi.org/10.1186/s12859-018-2508-4>,
+        <https://doi.org/10.1186/s12859-018-2510-x>,
+        <https://doi.org/10.1214/19-AOAS1279> ;
+    sc:description "The Extreme-scale Model Exploration with Swift (EMEWS) framework enables the direct integration of multi-language model exploration (ME) algorithms while scaling dynamic computational experiments to very large numbers (millions) of models on all major HPC platforms. EMEWS has been designed for any \"black box\" application code, such as agent-based and microsimulation models or training of machine learning models, that require multiple runs as part of heuristic model explorations. One of the main goals of EMEWS is to democratize the use of large-scale computing resources by making them accessible to more researchers in many more science domains. EMEWS is built on the Swift/T parallel scripting language." ;
+    sc:isAccessibleForFree true ;
+    sc:name "EMEWS" ;
+    sc:softwareHelp <https://emews.github.io/resources.html> ;
+    sc:url "https://emews.github.io/" .
+
 <https://bio.tools/emf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0621,
@@ -184211,22 +182740,22 @@ Y. Choi, Y. Chiu, D. Sontag. Learning Low-Dimensional Representations of Medical
 
 <https://bio.tools/emgb> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2887" ;
-            sc:name "Nucleic acid sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2887" ],
+            sc:additionalType "http://edamontology.org/data_2887" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Nucleic acid sequence record" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2887" ;
-            sc:name "Nucleic acid sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2887" ] ;
+            sc:additionalType "http://edamontology.org/data_2887" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Nucleic acid sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ],
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Image" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0850" ;
-            sc:name "Sequence set" ;
-            sc:sameAs "http://edamontology.org/data_0850" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0850" ;
+            sc:encodingFormat "http://edamontology.org/format_2200" ;
+            sc:name "Sequence set" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3174 ;
     sc:description "EMGB is a CWL-based workflow for metagenomics analyses including a web-based interface for filtering ind querying analysis results" ;
@@ -184242,7 +182771,7 @@ Y. Choi, Y. Chiu, D. Sontag. Learning Low-Dimensional Representations of Medical
     biotools:primaryContact "EMGB Service" .
 
 <https://bio.tools/emgonoff> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:citation <https://doi.org/10.1016/S0921-884X(96)95190-5> ;
     sc:description "Finds the \"on\" and \"off\" indicies of a single raw surface EMG burst (muscle contraction)." ;
@@ -184256,7 +182785,7 @@ Y. Choi, Y. Chiu, D. Sontag. Learning Low-Dimensional Representations of Medical
     biotools:primaryContact "Kieran Coghlan" .
 
 <https://bio.tools/emhp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0611,
@@ -184271,8 +182800,24 @@ Y. Choi, Y. Chiu, D. Sontag. Learning Low-Dimensional Representations of Medical
     sc:url "https://bitbucket.org/chazbot/emhp" ;
     biotools:primaryContact "Charles Bowman" .
 
+<https://bio.tools/emirge> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0196,
+        edam:topic_3053 ;
+    sc:citation <https://doi.org/10.1186/gb-2011-12-5-r44.>,
+        <https://doi.org/10.1371/journal.pone.0056018> ;
+    sc:description """EMIRGE (Expectation-Maximization Iterative Reconstruction of Genes from the Environment)  reconstructs full length ribosomal genes from short read sequencing data. In the process, it also provides estimates of the sequences' abundances. EMIRGE uses a modification of the EM algorithm to iterate between estimating the expected value of the abundance of all SSU sequences present in a sample and estimating the probabilities for each read that a specific sequence generated that read.  At the end of each iteration, those probabilities are used to re-calculate (correct) a consensus sequence for each reference SSU sequence, and the mapping is
+repeated, followed by the estimations of probabilities. The iterations should usually stop when the reference sequences no longer change from one iteration to the next.  Practically, 40-80 iterations is usually sufficient for many samples. Right now EMIRGE uses Bowtie alignments internally, though in theory a different mapper could be used.""" ;
+    sc:featureList edam:operation_0310 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "EMIRGE" ;
+    sc:url "https://github.com/csmiller/EMIRGE" ;
+    biotools:primaryContact "Christopher S. Miller" .
+
 <https://bio.tools/emirit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0218,
         edam:topic_0602,
@@ -184290,7 +182835,7 @@ Y. Choi, Y. Chiu, D. Sontag. Learning Low-Dimensional Representations of Medical
     sc:url "https://research.bioinformatics.udel.edu/emirit/" .
 
 <https://bio.tools/emlrt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_3055,
         edam:topic_3056,
@@ -184306,30 +182851,24 @@ Y. Choi, Y. Chiu, D. Sontag. Learning Low-Dimensional Representations of Medical
 
 <https://bio.tools/emma> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0874" ;
-            sc:name "Comparison matrix" ;
-            sc:sameAs "http://edamontology.org/data_0874" ],
+            sc:additionalType "http://edamontology.org/data_0874" ;
+            sc:name "Comparison matrix" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0874" ;
-            sc:name "Comparison matrix" ;
-            sc:sameAs "http://edamontology.org/data_0874" ],
+            sc:additionalType "http://edamontology.org/data_0872" ;
+            sc:name "Phylogenetic tree" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0872" ;
-            sc:name "Phylogenetic tree" ;
-            sc:sameAs "http://edamontology.org/data_0872" ],
+            sc:additionalType "http://edamontology.org/data_0874" ;
+            sc:name "Comparison matrix" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ],
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0872" ;
-            sc:name "Phylogenetic tree" ;
-            sc:sameAs "http://edamontology.org/data_0872" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0872" ;
+            sc:name "Phylogenetic tree" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0097 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -184358,16 +182897,36 @@ Y. Choi, Y. Chiu, D. Sontag. Learning Low-Dimensional Representations of Medical
     sc:softwareVersion "r6" ;
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/emma.html" .
 
+<https://bio.tools/emma-cad> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application",
+        "Workflow" ;
+    sc:applicationSubCategory edam:topic_0196,
+        edam:topic_0654,
+        edam:topic_0769,
+        edam:topic_3895,
+        edam:topic_3912 ;
+    sc:citation <https://doi.org/10.1021/ACSSYNBIO.1C00433>,
+        "pubmed:35050610" ;
+    sc:description "EMMA-CAD a web-based computer-aided design tool for the rapid design of bespoke mammalian expression vectors" ;
+    sc:featureList edam:operation_0310 ;
+    sc:isAccessibleForFree true ;
+    sc:name "EMMA-CAD" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://emma.cailab.org" .
+
 <https://bio.tools/emma2> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3117" ;
-            sc:name "Microarray hybridisation data" ;
-            sc:sameAs "http://edamontology.org/data_3117" ] ;
+            sc:additionalType "http://edamontology.org/data_3117" ;
+            sc:encodingFormat "http://edamontology.org/format_2058" ;
+            sc:name "Microarray hybridisation data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_3161" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_3308 ;
     sc:citation <https://doi.org/10.1186/1471-2105-10-50> ;
@@ -184391,7 +182950,7 @@ Y. Choi, Y. Chiu, D. Sontag. Learning Low-Dimensional Representations of Medical
     sc:url "http://emma.cebitec.uni-bielefeld.de" .
 
 <https://bio.tools/emma2_ws> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_3071,
@@ -184407,7 +182966,7 @@ Y. Choi, Y. Chiu, D. Sontag. Learning Low-Dimensional Representations of Medical
     sc:url "https://wiki.cebitec.uni-bielefeld.de/brf-software/index.php/UsingTheWSInterface" .
 
 <https://bio.tools/emmax> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3517 ;
     sc:citation <https://doi.org/10.1038/ng.548>,
@@ -184422,7 +182981,7 @@ Y. Choi, Y. Chiu, D. Sontag. Learning Low-Dimensional Representations of Medical
     sc:url "http://genetics.cs.ucla.edu/emmax/" .
 
 <https://bio.tools/emnuss> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_1317,
@@ -184441,7 +183000,7 @@ Y. Choi, Y. Chiu, D. Sontag. Learning Low-Dimensional Representations of Medical
     biotools:primaryContact "Sheng-You Huang" .
 
 <https://bio.tools/emodel-bdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0202,
@@ -184467,26 +183026,21 @@ A database of 200,005 comparative models of drug-bound proteins based on 1,391,4
 
 <https://bio.tools/emowse> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2886" ;
-            sc:name "Protein sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2886" ],
+            sc:additionalType "http://edamontology.org/data_1519" ;
+            sc:name "Peptide molecular weights" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1519" ;
-            sc:name "Peptide molecular weights" ;
-            sc:sameAs "http://edamontology.org/data_1519" ],
+            sc:additionalType "http://edamontology.org/data_2886" ;
+            sc:name "Protein sequence record" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1519" ;
-            sc:name "Peptide molecular weights" ;
-            sc:sameAs "http://edamontology.org/data_1519" ],
+            sc:additionalType "http://edamontology.org/data_1519" ;
+            sc:name "Peptide molecular weights" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1505" ;
-            sc:name "Amino acid index (molecular weight)" ;
-            sc:sameAs "http://edamontology.org/data_1505" ] ;
+            sc:additionalType "http://edamontology.org/data_1505" ;
+            sc:name "Amino acid index (molecular weight)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1262" ;
-            sc:name "Peptide molecular weight hits" ;
-            sc:sameAs "http://edamontology.org/data_1262" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1262" ;
+            sc:name "Peptide molecular weight hits" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0157 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -184516,7 +183070,7 @@ A database of 200,005 comparative models of drug-bound proteins based on 1,391,4
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/emowse.html" .
 
 <https://bio.tools/empiricalbrownsmethod> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2269 ;
@@ -184534,7 +183088,7 @@ A database of 200,005 comparative models of drug-bound proteins based on 1,391,4
     biotools:primaryContact "David Gibbs" .
 
 <https://bio.tools/empprior> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3293,
         edam:topic_3569 ;
@@ -184555,7 +183109,7 @@ A database of 200,005 comparative models of drug-bound proteins based on 1,391,4
         "John J. Andersen" .
 
 <https://bio.tools/empusa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3316 ;
     sc:author <https://orcid.org/0000-0001-9395-5559> ;
@@ -184574,7 +183128,7 @@ A database of 200,005 comparative models of drug-bound proteins based on 1,391,4
     biotools:primaryContact <https://orcid.org/0000-0001-8172-8981> .
 
 <https://bio.tools/emtome> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0602,
         edam:topic_2640,
@@ -184590,7 +183144,7 @@ resource for metastatic research.""" ;
     sc:url "http://www.emtome.org" .
 
 <https://bio.tools/emu> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3056,
@@ -184607,7 +183161,7 @@ resource for metastatic research.""" ;
     biotools:primaryContact <https://orcid.org/0000-0002-9540-6673> .
 
 <https://bio.tools/emvclass> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
@@ -184628,7 +183182,7 @@ resource for metastatic research.""" ;
     sc:url "https://www.egl-eurofins.com/emvclass/emvclass.php" .
 
 <https://bio.tools/ena> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0219,
@@ -184654,14 +183208,12 @@ resource for metastatic research.""" ;
 
 <https://bio.tools/ena_sequence_search> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0857" ;
-            sc:name "Sequence search results" ;
-            sc:sameAs "http://edamontology.org/data_0857" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0857" ;
+            sc:name "Sequence search results" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:author "Cochrane team" ;
@@ -184681,7 +183233,7 @@ resource for metastatic research.""" ;
         "Support" .
 
 <https://bio.tools/enaet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3382,
         edam:topic_3474 ;
     sc:citation <https://doi.org/10.1109/TIP.2020.3044220>,
@@ -184694,7 +183246,7 @@ Deep neural networks have been successfully applied to many real-world applicati
     sc:url "https://github.com/maple-research-lab/EnAET" .
 
 <https://bio.tools/enano> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_3168 ;
     sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAA551>,
@@ -184709,7 +183261,7 @@ ENANO is a FASTQ lossless compression algorithm especially designed for nanopore
     sc:url "https://github.com/guilledufort/EnanoFASTQ" .
 
 <https://bio.tools/encode-rnaseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_0769,
@@ -184728,7 +183280,7 @@ ENANO is a FASTQ lossless compression algorithm especially designed for nanopore
     sc:url "https://github.com/ENCODE-DCC/rna-seq-pipeline" .
 
 <https://bio.tools/encode_dcc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3169,
@@ -184755,7 +183307,7 @@ ENANO is a FASTQ lossless compression algorithm especially designed for nanopore
     biotools:primaryContact "Encode DCC Support" .
 
 <https://bio.tools/encodexplorer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3071 ;
@@ -184773,7 +183325,7 @@ ENANO is a FASTQ lossless compression algorithm especially designed for nanopore
     biotools:primaryContact "Charles Joly Beauparlant" .
 
 <https://bio.tools/encore> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_2229,
         edam:topic_3170,
@@ -184792,7 +183344,7 @@ Single-cell RNA sequencing enables us to characterize the cellular heterogeneity
     sc:url "https://github.com/SONG0417/ENCORE_V1.0.git" .
 
 <https://bio.tools/encurv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0153,
         edam:topic_0176,
@@ -184809,7 +183361,7 @@ Single-cell RNA sequencing enables us to characterize the cellular heterogeneity
     biotools:primaryContact <https://orcid.org/0000-0002-6748-8931> .
 
 <https://bio.tools/endeavour> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0622,
@@ -184830,7 +183382,7 @@ Single-cell RNA sequencing enables us to characterize the cellular heterogeneity
     biotools:primaryContact "Contact Form" .
 
 <https://bio.tools/endicheck> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3382 ;
     sc:citation <https://doi.org/10.1007/978-3-030-45237-7_15>,
         "pmcid:PMC7480700" ;
@@ -184844,7 +183396,7 @@ It is recommended to use --prefix to install into other-than-default location, s
     sc:url "http://github.com/rkapl/endicheck" .
 
 <https://bio.tools/endodb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_2229,
         edam:topic_3308,
@@ -184863,7 +183415,7 @@ EndoDB The endothelial cell database (EndoDB) is a freely accessible added-value
     sc:url "https://vibcancer.be/software-tools/endodb" .
 
 <https://bio.tools/endol2h> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3384,
         edam:topic_3474,
@@ -184878,7 +183430,7 @@ EndoDB The endothelial cell database (EndoDB) is a freely accessible added-value
     sc:url "https://github.com/CapsuleEndoscope/EndoL2H" .
 
 <https://bio.tools/endometdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3308,
         edam:topic_3337,
@@ -184902,8 +183454,28 @@ An extensive collection of human samples and data from patients, that aids in th
     sc:name "EndometDB" ;
     sc:url "https://endometdb.utu.fi/" .
 
+<https://bio.tools/endor> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0602,
+        edam:topic_3174,
+        edam:topic_3474,
+        edam:topic_3697 ;
+    sc:citation <https://doi.org/10.1101/2022.01.03.474763> ;
+    sc:description "Interpreting tree ensemble machine learning models with endoR." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3659,
+        edam:operation_3927 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "endoR" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/leylabmpi/endoR" .
+
 <https://bio.tools/endorex> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0621,
@@ -184920,8 +183492,32 @@ An extensive collection of human samples and data from patients, that aids in th
     sc:name "EndoRex" ;
     sc:url "https://github.com/AEVO-lab/EndoRex" .
 
+<https://bio.tools/endotime> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0659,
+        edam:topic_3170,
+        edam:topic_3337,
+        edam:topic_3519 ;
+    sc:citation <https://doi.org/10.1093/HUMREP/DEAC006>,
+        "pmcid:PMC8971653",
+        "pubmed:35092277" ;
+    sc:description "A package for the temporal refinement of endometrial biopsies using an initial timing value as provided via urinary ovulation test and the measurement of expression for a panel of time-sensitive genes" ;
+    sc:featureList edam:operation_0314,
+        edam:operation_3454,
+        edam:operation_3659,
+        edam:operation_3891 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "EndoTime" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/AE-Mitchell/EndoTime" .
+
 <https://bio.tools/enet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0602,
@@ -184937,8 +183533,52 @@ An extensive collection of human samples and data from patients, that aids in th
     sc:url "http://ecoli.med.utoronto.ca/" ;
     biotools:primaryContact "Andrew Emili" .
 
+<https://bio.tools/enfusion> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0114,
+        edam:topic_2640,
+        edam:topic_3170,
+        edam:topic_3308,
+        edam:topic_3408 ;
+    sc:citation <https://doi.org/10.1186/S12864-021-08094-Z>,
+        "pmcid:PMC8642973",
+        "pubmed:34863095" ;
+    sc:description "The ENsemble Fusion (EnFusion) repo contains a Dockerfile to build a Docker Image that can overlap outputs from 7 fusion detection algorithms, to identify high confidence fusion events." ;
+    sc:featureList edam:operation_0239,
+        edam:operation_3501 ;
+    sc:isAccessibleForFree true ;
+    sc:license "BSD-3-Clause" ;
+    sc:name "EnFusion" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/nch-igm/EnFusion" .
+
+<https://bio.tools/engrain> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0602,
+        edam:topic_0780,
+        edam:topic_3474,
+        edam:topic_3518 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAB829>,
+        "pubmed:34888624" ;
+    sc:description "A Supervised Ensemble Learning Method for Recovery of Large-scale Gene Regulatory Networks." ;
+    sc:featureList edam:operation_3436,
+        edam:operation_3766,
+        edam:operation_3928 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "EnGRaiN" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/AluruLab/EnGRaiN" .
+
 <https://bio.tools/enhancer-if> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0121,
@@ -184954,8 +183594,34 @@ An extensive collection of human samples and data from patients, that aids in th
     sc:name "Enhancer-IF" ;
     sc:url "http://thegleelab.org/Enhancer-IF" .
 
+<https://bio.tools/enhancer-lstmatt> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "DNA sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0749,
+        edam:topic_3295,
+        edam:topic_3474,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.3390/BIOM12070995>,
+        "pmcid:PMC9313278",
+        "pubmed:35883552" ;
+    sc:description "A Bi-LSTM and Attention-Based Deep Learning Method for Enhancer Recognition." ;
+    sc:featureList edam:operation_0224,
+        edam:operation_0335,
+        edam:operation_2428 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "Enhancer-LSTMAtt" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://www.biolscience.cn/Enhancer-LSTMAtt/" .
+
 <https://bio.tools/enhanceratlas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_2229,
@@ -184975,8 +183641,32 @@ an updated resource with typical enhancer annotation in 600 tissue/cell types ac
     sc:softwareVersion "2.0" ;
     sc:url "http://www.enhanceratlas.org/indexv2.php" .
 
+<https://bio.tools/enhffl> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0204,
+        edam:topic_0634,
+        edam:topic_0659,
+        edam:topic_0749,
+        edam:topic_3169 ;
+    sc:citation <https://doi.org/10.1093/PCMEDI/PBAB006>,
+        "pmcid:PMC8982537",
+        "pubmed:35694152" ;
+    sc:description "A database of enhancer mediated feed-forward loops for human and mouse." ;
+    sc:featureList edam:operation_0463,
+        edam:operation_2421,
+        edam:operation_3792 ;
+    sc:license "Not licensed" ;
+    sc:name "EnhFFL" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <http://lcbb.swjtu.edu.cn/EnhFFL/help/> ;
+    sc:url "http://lcbb.swjtu.edu.cn/EnhFFL/" .
+
 <https://bio.tools/enhic> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3169,
@@ -184995,7 +183685,7 @@ an updated resource with typical enhancer annotation in 600 tissue/cell types ac
     sc:url "https://github.com/wmalab/EnHiC" .
 
 <https://bio.tools/enhort> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_0769,
@@ -185016,14 +183706,12 @@ an updated resource with typical enhancer annotation in 600 tissue/cell types ac
 
 <https://bio.tools/enigma> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0928" ;
-            sc:name "Gene expression profile" ;
-            sc:sameAs "http://edamontology.org/data_0928" ] ;
+            sc:additionalType "http://edamontology.org/data_0928" ;
+            sc:name "Gene expression profile" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2984" ;
-            sc:name "Pathway or network report" ;
-            sc:sameAs "http://edamontology.org/data_2984" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2984" ;
+            sc:name "Pathway or network report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602 ;
     sc:citation <https://doi.org/10.1186/1752-0509-2-33> ;
@@ -185040,7 +183728,7 @@ an updated resource with typical enhancer annotation in 600 tissue/cell types ac
     biotools:primaryContact "Steven Maere" .
 
 <https://bio.tools/enigma_toolbox> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3053,
         edam:topic_3334,
         edam:topic_3384,
@@ -185062,7 +183750,7 @@ The ENIGMA Consortium brings together researchers in imaging genomics to underst
     sc:url "http://enigma-toolbox.readthedocs.io" .
 
 <https://bio.tools/enlighten2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0176,
         edam:topic_3292,
@@ -185087,14 +183775,13 @@ Enlighten2 allows to easily prepare and run molecular dynamics simulations of pr
 
 <https://bio.tools/enly> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3497" ;
-            sc:name "DNA sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_3497" ] ;
+            sc:additionalType "http://edamontology.org/data_3497" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "DNA sequence (raw)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3497" ;
-            sc:name "DNA sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_3497" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3497" ;
+            sc:name "DNA sequence (raw)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622 ;
     sc:author "Marco Fondi" ;
@@ -185111,7 +183798,7 @@ Enlighten2 allows to easily prepare and run molecular dynamics simulations of pr
     biotools:primaryContact "Marco Fondi" .
 
 <https://bio.tools/enmcb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_0654,
@@ -185132,22 +183819,22 @@ Enlighten2 allows to easily prepare and run molecular dynamics simulations of pr
 
 <https://bio.tools/enmix> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3117" ;
-            sc:name "Microarray hybridisation data" ;
-            sc:sameAs "http://edamontology.org/data_3117" ] ;
+            sc:additionalType "http://edamontology.org/data_3117" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Microarray hybridisation data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3117" ;
-            sc:name "Microarray hybridisation data" ;
-            sc:sameAs "http://edamontology.org/data_3117" ],
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ],
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Plot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3117" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Microarray hybridisation data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3295,
@@ -185169,8 +183856,30 @@ Enlighten2 allows to easily prepare and run molecular dynamics simulations of pr
     sc:url "http://bioconductor.org/packages/release/bioc/html/ENmix.html" ;
     biotools:primaryContact <http://orcid.org/0000-0002-9034-8902> .
 
+<https://bio.tools/enngene> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workbench" ;
+    sc:applicationSubCategory edam:topic_0621,
+        edam:topic_3168,
+        edam:topic_3308,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1186/S12864-022-08414-X>,
+        "pmcid:PMC8973509",
+        "pubmed:35361122" ;
+    sc:description "ENNGene is an application that simplifies the local training of custom Convolutional Neural Network models on Genomic data via an easy to use Graphical User Interface." ;
+    sc:featureList edam:operation_0267,
+        edam:operation_0502,
+        edam:operation_3216,
+        edam:operation_3359,
+        edam:operation_3927 ;
+    sc:isAccessibleForFree true ;
+    sc:license "AGPL-3.0" ;
+    sc:name "ENNGene" ;
+    sc:operatingSystem "Linux" ;
+    sc:url "https://github.com/ML-Bioinfo-CEITEC/ENNGene" .
+
 <https://bio.tools/enologos> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_2269,
@@ -185191,22 +183900,22 @@ Enlighten2 allows to easily prepare and run molecular dynamics simulations of pr
 
 <https://bio.tools/enrichedheatmap> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1276" ;
-            sc:name "Nucleic acid features" ;
-            sc:sameAs "http://edamontology.org/data_1276" ],
+            sc:additionalType "http://edamontology.org/data_1017" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Sequence range" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Gene expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ],
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Gene expression data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1017" ;
-            sc:name "Sequence range" ;
-            sc:sameAs "http://edamontology.org/data_1017" ] ;
+            sc:additionalType "http://edamontology.org/data_1276" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Nucleic acid features" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1636" ;
-            sc:name "Heat map" ;
-            sc:sameAs "http://edamontology.org/data_1636" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1636" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Heat map" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -185228,7 +183937,7 @@ Enlighten2 allows to easily prepare and run molecular dynamics simulations of pr
     biotools:primaryContact "Zuguang Gu" .
 
 <https://bio.tools/enrichment> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203 ;
     sc:citation <https://doi.org/10.1371/journal.pcbi.0030039> ;
@@ -185243,7 +183952,7 @@ Enlighten2 allows to easily prepare and run molecular dynamics simulations of pr
     sc:url "https://github.com/ajmazurie/xstats.enrichment" .
 
 <https://bio.tools/enrichmentbrowser> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203 ;
@@ -185265,7 +183974,7 @@ Enlighten2 allows to easily prepare and run molecular dynamics simulations of pr
         "Ludwig Geistlinger" .
 
 <https://bio.tools/enrichmentmap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0102,
@@ -185286,20 +183995,44 @@ Enlighten2 allows to easily prepare and run molecular dynamics simulations of pr
     sc:url "http://baderlab.org/Software/EnrichmentMap" ;
     biotools:primaryContact "EnrichmentMap Team" .
 
+<https://bio.tools/enrichmir> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0659,
+        edam:topic_3168,
+        edam:topic_3512,
+        edam:topic_3518 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAC395>,
+        "pmcid:PMC9252831",
+        "pubmed:35609985" ;
+    sc:description "The enrichMiR R package implements various tests to identify miRNAs whose targets are enriched among genesets of interest or a differential expression signature." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_0463,
+        edam:operation_2436,
+        edam:operation_3792 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "enrichMiR" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://ethz-ins.org/enrichMiR/" .
+
 <https://bio.tools/enrichnet> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3021" ;
-            sc:name "UniProt accession" ;
-            sc:sameAs "http://edamontology.org/data_3021" ],
+            sc:additionalType "http://edamontology.org/data_1033" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Ensembl gene ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1033" ;
-            sc:name "Ensembl gene ID" ;
-            sc:sameAs "http://edamontology.org/data_1033" ] ;
+            sc:additionalType "http://edamontology.org/data_3021" ;
+            sc:name "UniProt accession" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Pathway or network" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -185321,7 +184054,7 @@ Enlighten2 allows to easily prepare and run molecular dynamics simulations of pr
     biotools:primaryContact <http://orcid.org/0000-0003-3977-7469> .
 
 <https://bio.tools/enrichplot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070 ;
     sc:description "Visualization methods for interpreting functional enrichment results obtained from ORA or GSEA analysis. All the visualization methods are developed based on 'ggplot2' graphics." ;
@@ -185340,7 +184073,7 @@ Enlighten2 allows to easily prepare and run molecular dynamics simulations of pr
     biotools:primaryContact "Guangchuang Yu" .
 
 <https://bio.tools/enrichr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0623,
         edam:topic_3053 ;
@@ -185356,7 +184089,7 @@ Enlighten2 allows to easily prepare and run molecular dynamics simulations of pr
     biotools:primaryContact "Avi Maayan" .
 
 <https://bio.tools/enrichrbot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0625,
         edam:topic_0659,
@@ -185372,8 +184105,30 @@ EnrichrBot performs six tasks, each task is scheduled as a cron job.""" ;
     sc:name "EnrichrBot" ;
     sc:url "https://github.com/MaayanLab/EnrichrBot" .
 
+<https://bio.tools/ens-vs> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workbench" ;
+    sc:applicationSubCategory edam:topic_0128,
+        edam:topic_0154,
+        edam:topic_0209,
+        edam:topic_2275,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1039/C9RA09211K>,
+        "pmcid:PMC9049841",
+        "pubmed:35492172" ;
+    sc:description "A method for virtual screening based on ensemble learning." ;
+    sc:featureList edam:operation_3891,
+        edam:operation_3935,
+        edam:operation_3938 ;
+    sc:license "Not licensed" ;
+    sc:name "ENS-VS" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/eddyblue/ENS-VS" .
+
 <https://bio.tools/ensECBS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Script" ;
     sc:applicationSubCategory edam:topic_0154,
@@ -185389,8 +184144,30 @@ EnrichrBot performs six tasks, each task is scheduled as a cron job.""" ;
     sc:name "ensECBS" ;
     sc:url "https://github.com/keunwan-kist/ECBS" .
 
+<https://bio.tools/ensdeconv> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_3170,
+        edam:topic_3173,
+        edam:topic_3308,
+        edam:topic_3452,
+        edam:topic_3934 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC279>,
+        "pubmed:35438146" ;
+    sc:description "Robust and accurate estimation of cellular fraction from tissue omics data via ensemble deconvolution." ;
+    sc:featureList edam:operation_3436,
+        edam:operation_3629,
+        edam:operation_3659 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "EnsDeconv" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/randel/EnsDeconv" .
+
 <https://bio.tools/ensembl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0622,
@@ -185439,7 +184216,7 @@ EnrichrBot performs six tasks, each task is scheduled as a cron job.""" ;
     biotools:primaryContact "Paul Flicek" .
 
 <https://bio.tools/ensembl-covid19> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0621,
         edam:topic_0622,
@@ -185465,34 +184242,30 @@ The Ensembl/GENCODE human protein-coding gene set linked to COVID-19 can be foun
 
 <https://bio.tools/ensembl_api> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0842" ;
-            sc:name "Identifier" ;
-            sc:sameAs "http://edamontology.org/data_0842" ],
+            sc:additionalType "http://edamontology.org/data_1026" ;
+            sc:name "Gene symbol" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0842" ;
-            sc:name "Identifier" ;
-            sc:sameAs "http://edamontology.org/data_0842" ],
+            sc:additionalType "http://edamontology.org/data_0842" ;
+            sc:name "Identifier" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1045" ;
-            sc:name "Species name" ;
-            sc:sameAs "http://edamontology.org/data_1045" ],
+            sc:additionalType "http://edamontology.org/data_1045" ;
+            sc:name "Species name" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1026" ;
-            sc:name "Gene symbol" ;
-            sc:sameAs "http://edamontology.org/data_1026" ] ;
+            sc:additionalType "http://edamontology.org/data_0842" ;
+            sc:name "Identifier" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_3307 ;
@@ -185505,31 +184278,8 @@ The Ensembl/GENCODE human protein-coding gene set linked to COVID-19 can be foun
         "Windows" ;
     sc:url "https://bigcat-um.github.io/EnsemblOpenAPI/" .
 
-<https://bio.tools/ensembl_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0621,
-        edam:topic_0749,
-        edam:topic_2885,
-        edam:topic_3295,
-        edam:topic_3411 ;
-    sc:citation <https://doi.org/10.1080/14767058.2019.1671344>,
-        "pubmed:31581866" ;
-    sc:description """DNA methylation profiles of genes associated with angiogenesis in the samples of placenta in pregnancies complicated by intrauterine growth restriction.
-
-Export custom datasets from Ensembl with this data-mining tool.
-
-Ensembl is a genome browser for vertebrate genomes that supports research in comparative genomics, evolution, sequence variation and transcriptional regulation. Ensembl annotate genes, computes multiple alignments, predicts regulatory function and collects disease data. Ensembl tools include BLAST, BLAT, BioMart and the Variant Effect Predictor (VEP) for all supported species.
-
-||| NAME (ensembl) SIMILAR TO (PUB. DIFFERENT) bio.tools/ensembl (Ensembl).
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'IUGR pregnancies', 'CpGi IUGR', 'IUGR', 'CpGi'""" ;
-    sc:featureList edam:operation_0308,
-        edam:operation_3207,
-        edam:operation_3208 ;
-    sc:name "ensembl_autogenerated" ;
-    sc:url "http://www.ensembl.org" .
-
 <https://bio.tools/ensembl_drosophila_genome_browser> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_2815,
@@ -185551,7 +184301,7 @@ Ensembl is a genome browser for vertebrate genomes that supports research in com
     biotools:primaryContact "Contact Form" .
 
 <https://bio.tools/ensembl_fugu_genome_browser> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_2815,
@@ -185573,7 +184323,7 @@ Ensembl is a genome browser for vertebrate genomes that supports research in com
     biotools:primaryContact "Contact Form" .
 
 <https://bio.tools/ensembl_genomes> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0622 ;
     sc:citation <https://doi.org/10.1093/nar/gkv1209> ;
@@ -185589,18 +184339,16 @@ Ensembl is a genome browser for vertebrate genomes that supports research in com
 
 <https://bio.tools/ensembl_genomes_bacteria_blast> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:name "Sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0857" ;
-            sc:name "Sequence search results" ;
-            sc:sameAs "http://edamontology.org/data_0857" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0857" ;
+            sc:name "Sequence search results" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:author "Ensembl team" ;
@@ -185621,14 +184369,12 @@ Ensembl is a genome browser for vertebrate genomes that supports research in com
 
 <https://bio.tools/ensembl_genomes_bacteria_id_history_converter> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2610" ;
-            sc:name "Ensembl ID" ;
-            sc:sameAs "http://edamontology.org/data_2610" ] ;
+            sc:additionalType "http://edamontology.org/data_2610" ;
+            sc:name "Ensembl ID" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2610" ;
-            sc:name "Ensembl ID" ;
-            sc:sameAs "http://edamontology.org/data_2610" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2610" ;
+            sc:name "Ensembl ID" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3345 ;
     sc:author "Ensembl team" ;
@@ -185648,18 +184394,16 @@ Ensembl is a genome browser for vertebrate genomes that supports research in com
 
 <https://bio.tools/ensembl_genomes_bacteria_sequence_search> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0857" ;
-            sc:name "Sequence search results" ;
-            sc:sameAs "http://edamontology.org/data_0857" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:name "Sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0857" ;
+            sc:name "Sequence search results" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:author "Ensembl Genomes team" ;
@@ -185679,10 +184423,10 @@ Ensembl is a genome browser for vertebrate genomes that supports research in com
 
 <https://bio.tools/ensembl_genomes_fungi_assembly_converter> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1276" ;
-            sc:name "Nucleic acid features" ;
-            sc:sameAs "http://edamontology.org/data_1276" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1276" ;
+            sc:encodingFormat "http://edamontology.org/format_3007" ;
+            sc:name "Nucleic acid features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102 ;
     sc:author "Ensembl team" ;
@@ -185702,18 +184446,16 @@ Ensembl is a genome browser for vertebrate genomes that supports research in com
 
 <https://bio.tools/ensembl_genomes_fungi_blast> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0857" ;
-            sc:name "Sequence search results" ;
-            sc:sameAs "http://edamontology.org/data_0857" ],
+            sc:additionalType "http://edamontology.org/data_0857" ;
+            sc:name "Sequence search results" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:name "Sequence alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:author "Ensembl team" ;
@@ -185733,18 +184475,18 @@ Ensembl is a genome browser for vertebrate genomes that supports research in com
 
 <https://bio.tools/ensembl_genomes_fungi_data_slicer> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ],
+            sc:additionalType "http://edamontology.org/data_2012" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence coordinates" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2012" ;
-            sc:name "Sequence coordinates" ;
-            sc:sameAs "http://edamontology.org/data_2012" ],
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence variations" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:author "Ensembl Genomes team" ;
@@ -185764,14 +184506,12 @@ Ensembl is a genome browser for vertebrate genomes that supports research in com
 
 <https://bio.tools/ensembl_genomes_fungi_id_history_converter> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2610" ;
-            sc:name "Ensembl ID" ;
-            sc:sameAs "http://edamontology.org/data_2610" ] ;
+            sc:additionalType "http://edamontology.org/data_2610" ;
+            sc:name "Ensembl ID" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2610" ;
-            sc:name "Ensembl ID" ;
-            sc:sameAs "http://edamontology.org/data_2610" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2610" ;
+            sc:name "Ensembl ID" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3345 ;
     sc:author "Ensembl team" ;
@@ -185791,18 +184531,16 @@ Ensembl is a genome browser for vertebrate genomes that supports research in com
 
 <https://bio.tools/ensembl_genomes_fungi_sequence_search> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:name "Sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0857" ;
-            sc:name "Sequence search results" ;
-            sc:sameAs "http://edamontology.org/data_0857" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0857" ;
+            sc:name "Sequence search results" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:author "Ensembl team" ;
@@ -185822,10 +184560,10 @@ Ensembl is a genome browser for vertebrate genomes that supports research in com
 
 <https://bio.tools/ensembl_genomes_metazoa_assembly_converter> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1276" ;
-            sc:name "Nucleic acid features" ;
-            sc:sameAs "http://edamontology.org/data_1276" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1276" ;
+            sc:encodingFormat "http://edamontology.org/format_3007" ;
+            sc:name "Nucleic acid features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102 ;
     sc:author "Ensembl team" ;
@@ -185845,18 +184583,16 @@ Ensembl is a genome browser for vertebrate genomes that supports research in com
 
 <https://bio.tools/ensembl_genomes_metazoa_blast> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0857" ;
-            sc:name "Sequence search results" ;
-            sc:sameAs "http://edamontology.org/data_0857" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:name "Sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0857" ;
+            sc:name "Sequence search results" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:author "Ensembl team" ;
@@ -185876,18 +184612,18 @@ Ensembl is a genome browser for vertebrate genomes that supports research in com
 
 <https://bio.tools/ensembl_genomes_metazoa_data_slicer> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2012" ;
-            sc:name "Sequence coordinates" ;
-            sc:sameAs "http://edamontology.org/data_2012" ],
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence variations" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2012" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence coordinates" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:author "Ensembl Genomes team" ;
@@ -185907,14 +184643,12 @@ Ensembl is a genome browser for vertebrate genomes that supports research in com
 
 <https://bio.tools/ensembl_genomes_metazoa_id_history_converter> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2610" ;
-            sc:name "Ensembl ID" ;
-            sc:sameAs "http://edamontology.org/data_2610" ] ;
+            sc:additionalType "http://edamontology.org/data_2610" ;
+            sc:name "Ensembl ID" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2610" ;
-            sc:name "Ensembl ID" ;
-            sc:sameAs "http://edamontology.org/data_2610" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2610" ;
+            sc:name "Ensembl ID" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3345 ;
     sc:author "Ensembl team" ;
@@ -185934,14 +184668,13 @@ Ensembl is a genome browser for vertebrate genomes that supports research in com
 
 <https://bio.tools/ensembl_genomes_metazoa_sequence_search> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:name "Sequence alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:author "Ensembl Genomes team" ;
@@ -185961,10 +184694,10 @@ Ensembl is a genome browser for vertebrate genomes that supports research in com
 
 <https://bio.tools/ensembl_genomes_plants_assembly_converter> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1276" ;
-            sc:name "Nucleic acid features" ;
-            sc:sameAs "http://edamontology.org/data_1276" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1276" ;
+            sc:encodingFormat "http://edamontology.org/format_3007" ;
+            sc:name "Nucleic acid features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102 ;
     sc:author "Ensembl team" ;
@@ -185984,18 +184717,16 @@ Ensembl is a genome browser for vertebrate genomes that supports research in com
 
 <https://bio.tools/ensembl_genomes_plants_blast> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ],
+            sc:additionalType "http://edamontology.org/data_0857" ;
+            sc:name "Sequence search results" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0857" ;
-            sc:name "Sequence search results" ;
-            sc:sameAs "http://edamontology.org/data_0857" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:name "Sequence alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:author "Ensembl team" ;
@@ -186016,18 +184747,18 @@ Ensembl is a genome browser for vertebrate genomes that supports research in com
 
 <https://bio.tools/ensembl_genomes_plants_data_slicer> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2012" ;
-            sc:name "Sequence coordinates" ;
-            sc:sameAs "http://edamontology.org/data_2012" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ],
+            sc:additionalType "http://edamontology.org/data_2012" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence coordinates" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence variations" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:author "Ensembl Genomes team" ;
@@ -186047,14 +184778,12 @@ Ensembl is a genome browser for vertebrate genomes that supports research in com
 
 <https://bio.tools/ensembl_genomes_plants_id_history_converter> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2610" ;
-            sc:name "Ensembl ID" ;
-            sc:sameAs "http://edamontology.org/data_2610" ] ;
+            sc:additionalType "http://edamontology.org/data_2610" ;
+            sc:name "Ensembl ID" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2610" ;
-            sc:name "Ensembl ID" ;
-            sc:sameAs "http://edamontology.org/data_2610" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2610" ;
+            sc:name "Ensembl ID" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3345 ;
     sc:author "Ensembl team" ;
@@ -186074,18 +184803,16 @@ Ensembl is a genome browser for vertebrate genomes that supports research in com
 
 <https://bio.tools/ensembl_genomes_plants_sequence_search> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ],
+            sc:additionalType "http://edamontology.org/data_0857" ;
+            sc:name "Sequence search results" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0857" ;
-            sc:name "Sequence search results" ;
-            sc:sameAs "http://edamontology.org/data_0857" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:name "Sequence alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:author "Ensembl Genomes team" ;
@@ -186105,10 +184832,10 @@ Ensembl is a genome browser for vertebrate genomes that supports research in com
 
 <https://bio.tools/ensembl_genomes_protists_assembly_converter> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1276" ;
-            sc:name "Nucleic acid features" ;
-            sc:sameAs "http://edamontology.org/data_1276" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1276" ;
+            sc:encodingFormat "http://edamontology.org/format_3007" ;
+            sc:name "Nucleic acid features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102 ;
     sc:author "Ensembl team" ;
@@ -186128,14 +184855,13 @@ Ensembl is a genome browser for vertebrate genomes that supports research in com
 
 <https://bio.tools/ensembl_genomes_protists_blast> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:name "Sequence alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:author "Ensembl team" ;
@@ -186156,18 +184882,18 @@ Ensembl is a genome browser for vertebrate genomes that supports research in com
 
 <https://bio.tools/ensembl_genomes_protists_data_slicer> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2012" ;
-            sc:name "Sequence coordinates" ;
-            sc:sameAs "http://edamontology.org/data_2012" ],
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence variations" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2012" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence coordinates" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:author "Ensembl Genomes team" ;
@@ -186187,14 +184913,12 @@ Ensembl is a genome browser for vertebrate genomes that supports research in com
 
 <https://bio.tools/ensembl_genomes_protists_id_history_converter> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2610" ;
-            sc:name "Ensembl ID" ;
-            sc:sameAs "http://edamontology.org/data_2610" ] ;
+            sc:additionalType "http://edamontology.org/data_2610" ;
+            sc:name "Ensembl ID" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2610" ;
-            sc:name "Ensembl ID" ;
-            sc:sameAs "http://edamontology.org/data_2610" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2610" ;
+            sc:name "Ensembl ID" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3345 ;
     sc:author "Ensembl team" ;
@@ -186214,14 +184938,13 @@ Ensembl is a genome browser for vertebrate genomes that supports research in com
 
 <https://bio.tools/ensembl_genomes_protists_sequence_search> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:name "Sequence alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:author "Ensembl team" ;
@@ -186240,7 +184963,7 @@ Ensembl is a genome browser for vertebrate genomes that supports research in com
     biotools:primaryContact "Ensembl Genomes webteam" .
 
 <https://bio.tools/ensembl_mouse_genome_browser> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0622,
@@ -186261,7 +184984,7 @@ Ensembl is a genome browser for vertebrate genomes that supports research in com
     biotools:primaryContact "Contact form" .
 
 <https://bio.tools/ensembl_rat_genome_browser> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0622,
@@ -186284,14 +185007,13 @@ Ensembl is a genome browser for vertebrate genomes that supports research in com
 
 <https://bio.tools/ensembl_sequence_search_blast> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0857" ;
-            sc:name "Sequence search results" ;
-            sc:sameAs "http://edamontology.org/data_0857" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0857" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Sequence search results" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1016/S0022-2836(05)80360-2> ;
@@ -186309,7 +185031,7 @@ Ensembl is a genome browser for vertebrate genomes that supports research in com
     biotools:primaryContact "Andrew Yates" .
 
 <https://bio.tools/ensembl_variant_effect_predictor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
@@ -186328,7 +185050,7 @@ Ensembl is a genome browser for vertebrate genomes that supports research in com
     biotools:primaryContact "William McLarenEmail author," .
 
 <https://bio.tools/ensembl_zebrafish_genome_browser> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0622,
@@ -186350,7 +185072,7 @@ Ensembl is a genome browser for vertebrate genomes that supports research in com
     biotools:primaryContact "Contact Form" .
 
 <https://bio.tools/ensembldb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3071 ;
@@ -186369,7 +185091,7 @@ Ensembl is a genome browser for vertebrate genomes that supports research in com
     biotools:primaryContact "Johannes Rainer" .
 
 <https://bio.tools/ensembldb3> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070 ;
     sc:description "This library provides capabilities for querying Ensembl MySQL databases and for \"administering\" them. It is compatible with a range of Ensembl releases." ;
@@ -186383,8 +185105,28 @@ Ensembl is a genome browser for vertebrate genomes that supports research in com
     sc:url "https://bitbucket.org/pycogent3/ensembldb3" ;
     biotools:primaryContact "Australia" .
 
+<https://bio.tools/ensemble-ahtppred> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workflow" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0769,
+        edam:topic_3335,
+        edam:topic_3422,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.3389/FGENE.2022.883766>,
+        "pmcid:PMC9096110",
+        "pubmed:35571042" ;
+    sc:description "An ensemble machine learning algorithm composed of a random forest (RF), a support vector machine (SVM), and extreme gradient boosting (XGB), with the aim of integrating diverse heterogeneous algorithms to enhance the robustness of the final predictive model." ;
+    sc:featureList edam:operation_0267,
+        edam:operation_3435,
+        edam:operation_3631 ;
+    sc:license "Not licensed" ;
+    sc:name "Ensemble-AHTPpred" ;
+    sc:operatingSystem "Linux" ;
+    sc:url "http://ncrna-pred.com/Ensemble_AHTPpred.htm" .
+
 <https://bio.tools/ensemble_nmf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0602,
@@ -186401,7 +185143,7 @@ Ensembl is a genome browser for vertebrate genomes that supports research in com
     sc:url "http://mlg.ucd.ie/nmf" .
 
 <https://bio.tools/ensembleclust> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099 ;
     sc:citation <https://doi.org/10.1186/1471-2105-12-S1-S48> ;
@@ -186413,16 +185155,35 @@ Ensembl is a genome browser for vertebrate genomes that supports research in com
     sc:softwareVersion "1.0" ;
     sc:url "http://bpla-kernel.dna.bio.keio.ac.jp/clustering/" .
 
+<https://bio.tools/ensemblefam> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0160,
+        edam:topic_0623,
+        edam:topic_0820,
+        edam:topic_1775,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1186/S12859-022-04626-W>,
+        "pmcid:PMC8919565",
+        "pubmed:35287576" ;
+    sc:description "EnsembleFam: Towards a more accurate protein function prediction in twilight zone" ;
+    sc:featureList edam:operation_0477,
+        edam:operation_1777,
+        edam:operation_2995,
+        edam:operation_3092 ;
+    sc:license "Not licensed" ;
+    sc:name "EnsembleFam" ;
+    sc:url "https://github.com/NeamulKabir/EnsembleFam" .
+
 <https://bio.tools/ensembleqdb> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1893" ;
-            sc:name "Locus ID" ;
-            sc:sameAs "http://edamontology.org/data_1893" ] ;
+            sc:additionalType "http://edamontology.org/data_1893" ;
+            sc:name "Locus ID" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1246" ;
-            sc:name "Sequence cluster (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1246" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1246" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Sequence cluster (nucleic acid)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3308 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btr307> ;
@@ -186437,7 +185198,7 @@ Ensembl is a genome browser for vertebrate genomes that supports research in com
     sc:url "http://bioinformatics.intec.ugent.be/kmarchal/Supplementary_Information_DeSmet_2011/" .
 
 <https://bio.tools/ensembler> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3376,
@@ -186458,7 +185219,7 @@ Ensembl is a genome browser for vertebrate genomes that supports research in com
         "Patrick B. Grinaway" .
 
 <https://bio.tools/ensembler-md> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0176,
         edam:topic_3332,
@@ -186476,21 +185237,8 @@ Ensembl is a genome browser for vertebrate genomes that supports research in com
     sc:url "https://github.com/rinikerlab/Ensembler" ;
     biotools:primaryContact <https://orcid.org/0000-0003-1893-4031> .
 
-<https://bio.tools/ensemblgenomes> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_2885,
-        edam:topic_3517,
-        edam:topic_3810 ;
-    sc:citation <https://doi.org/10.1371/JOURNAL.PONE.0221064>,
-        "pmcid:PMC6690582",
-        "pubmed:31404111" ;
-    sc:description "> VERY_LOW CONFIDENCE! | > COMMON LINK WITH (PUB. & NAME DIFFERENT) bio.tools/ensembl_genomes (ENSEMBLGENOMES.ORG) | > CORRECT NAME OF TOOL COULD ALSO BE 'six-rowed barley', 'Kazakhstan', 'six-rowed', 'barley' | Association mapping for agronomic traits in six-rowed spring barley from the USA harvested in Kazakhstan | Ensembl Genomes: Extending Ensembl across the taxonomic space | Ensembl Genomes Archive Sites Now Available | Ensembl Genomes now has a new set of archive sites from July 2018. These can be found at the following URLs" ;
-    sc:featureList edam:operation_0337,
-        edam:operation_3196 ;
-    sc:name "ensemblgenomes" ;
-    sc:url "http://ensemblgenomes.org" .
-
 <https://bio.tools/ensemblqdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btr307> ;
@@ -186506,14 +185254,14 @@ Ensembl is a genome browser for vertebrate genomes that supports research in com
 
 <https://bio.tools/ensemblvep> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ] ;
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence variations" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence variations" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0091,
@@ -186532,7 +185280,7 @@ Ensembl is a genome browser for vertebrate genomes that supports research in com
     biotools:primaryContact "BioConductor Package Maintainer" .
 
 <https://bio.tools/enset> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0632,
         edam:topic_0780,
@@ -186553,7 +185301,7 @@ Our Ensete Knowledge Base is a repository of information, sharing knowledge on E
     sc:url "https://enset.aau.edu.et/index.html" .
 
 <https://bio.tools/ent> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3053 ;
     sc:citation <https://doi.org/10.1109/TCBB.2007.70223> ;
@@ -186566,7 +185314,7 @@ Our Ensete Knowledge Base is a repository of information, sharing knowledge on E
     sc:url "http://dna.engr.uconn.edu/?page_id=25" .
 
 <https://bio.tools/enterix> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0622,
@@ -186588,14 +185336,14 @@ Our Ensete Knowledge Base is a repository of information, sharing knowledge on E
 
 <https://bio.tools/enterotyping> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2082" ;
-            sc:name "Matrix" ;
-            sc:sameAs "http://edamontology.org/data_2082" ] ;
+            sc:additionalType "http://edamontology.org/data_2082" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Matrix" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2082" ;
-            sc:name "Matrix" ;
-            sc:sameAs "http://edamontology.org/data_2082" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2082" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Matrix" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3174 ;
     sc:citation <https://doi.org/10.1038/nature09944>,
@@ -186619,14 +185367,12 @@ Our Ensete Knowledge Base is a repository of information, sharing knowledge on E
 
 <https://bio.tools/entret> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0957" ;
-            sc:name "Database metadata" ;
-            sc:sameAs "http://edamontology.org/data_0957" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0957" ;
+            sc:name "Database metadata" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3077 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -186656,7 +185402,7 @@ Our Ensete Knowledge Base is a repository of information, sharing knowledge on E
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/entret.html" .
 
 <https://bio.tools/entrez> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -186685,7 +185431,7 @@ Our Ensete Knowledge Base is a repository of information, sharing knowledge on E
     biotools:primaryContact "Entrez contact form" .
 
 <https://bio.tools/entrez_gene> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0602,
@@ -186708,14 +185454,13 @@ Our Ensete Knowledge Base is a repository of information, sharing knowledge on E
 
 <https://bio.tools/entrez_protein_clusters> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1075" ;
-            sc:name "Protein family identifier" ;
-            sc:sameAs "http://edamontology.org/data_1075" ] ;
+            sc:additionalType "http://edamontology.org/data_1075" ;
+            sc:name "Protein family identifier" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0907" ;
-            sc:name "Protein family report" ;
-            sc:sameAs "http://edamontology.org/data_0907" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0907" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Protein family report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0194,
@@ -186732,7 +185477,7 @@ Our Ensete Knowledge Base is a repository of information, sharing knowledge on E
     sc:url "http://www.ncbi.nlm.nih.gov/sites/entrez?db=proteinclusters" .
 
 <https://bio.tools/entropyexplorer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3518 ;
@@ -186753,20 +185498,42 @@ Our Ensete Knowledge Base is a repository of information, sharing knowledge on E
     sc:url "https://cran.r-project.org/web/packages/EntropyExplorer/index.html" ;
     biotools:primaryContact "Kai Wang" .
 
+<https://bio.tools/entropyhub> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_3068,
+        edam:topic_3315,
+        edam:topic_3372,
+        edam:topic_3382 ;
+    sc:citation <https://doi.org/10.1371/JOURNAL.PONE.0259448>,
+        "pmcid:PMC8568273",
+        "pubmed:34735497" ;
+    sc:description "An open-source toolkit for entropic time-series analysis." ;
+    sc:featureList edam:operation_0455,
+        edam:operation_3096,
+        edam:operation_3454 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Apache-2.0" ;
+    sc:name "EntropyHub" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://www.EntropyHub.xyz" .
+
 <https://bio.tools/envipat> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0846" ;
-            sc:name "Chemical formula" ;
-            sc:sameAs "http://edamontology.org/data_0846" ] ;
+            sc:additionalType "http://edamontology.org/data_0846" ;
+            sc:encodingFormat "http://edamontology.org/format_3554" ;
+            sc:name "Chemical formula" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ],
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3603" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library",
         "Web application" ;
@@ -186788,26 +185555,26 @@ Our Ensete Knowledge Base is a repository of information, sharing knowledge on E
 
 <https://bio.tools/envisionquery> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0842" ;
-            sc:name "Identifier" ;
-            sc:sameAs "http://edamontology.org/data_0842" ],
+            sc:additionalType "http://edamontology.org/data_2291" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "UniProt ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2291" ;
-            sc:name "UniProt ID" ;
-            sc:sameAs "http://edamontology.org/data_2291" ] ;
+            sc:additionalType "http://edamontology.org/data_0842" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Identifier" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2080" ;
-            sc:name "Database search results" ;
-            sc:sameAs "http://edamontology.org/data_2080" ],
+            sc:additionalType "http://edamontology.org/data_0842" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Identifier" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2291" ;
-            sc:name "UniProt ID" ;
-            sc:sameAs "http://edamontology.org/data_2291" ],
+            sc:additionalType "http://edamontology.org/data_2291" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "UniProt ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0842" ;
-            sc:name "Identifier" ;
-            sc:sameAs "http://edamontology.org/data_0842" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2080" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Database search results" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0091 ;
@@ -186827,7 +185594,7 @@ Our Ensete Knowledge Base is a repository of information, sharing knowledge on E
         "Roger Day" .
 
 <https://bio.tools/envrtype> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0218,
         edam:topic_0610,
         edam:topic_0625,
@@ -186842,7 +185609,7 @@ Our Ensete Knowledge Base is a repository of information, sharing knowledge on E
     sc:url "https://github.com/allogamous/EnvRtype" .
 
 <https://bio.tools/enzkin> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0821,
         edam:topic_3070,
@@ -186861,8 +185628,28 @@ Our Ensete Knowledge Base is a repository of information, sharing knowledge on E
     sc:url "https://www.mathworks.com/matlabcentral/fileexchange/26653-enzkin" ;
     biotools:primaryContact "Giuseppe Cardillo" .
 
+<https://bio.tools/enzo> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0196,
+        edam:topic_0821,
+        edam:topic_3314,
+        edam:topic_3315 ;
+    sc:citation <https://doi.org/10.1007/978-1-0716-1767-0_7>,
+        "pubmed:34888719" ;
+    sc:description "Automatic Assembly and Calibration of Models of Enzymatic Reactions Based on Ordinary Differential Equations." ;
+    sc:featureList edam:operation_0310,
+        edam:operation_0334,
+        edam:operation_3799 ;
+    sc:isAccessibleForFree true ;
+    sc:name "ENZO" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://enzo.cmm.ki.si/" .
+
 <https://bio.tools/enzymclass> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_0780,
         edam:topic_0821,
@@ -186877,7 +185664,7 @@ Our Ensete Knowledge Base is a repository of information, sharing knowledge on E
     sc:url "https://github.com/deeprob/ThioesteraseEnzymeSpecificity" .
 
 <https://bio.tools/enzyme> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0821 ;
     sc:citation <https://doi.org/10.1093/nar/28.1.304> ;
@@ -186896,7 +185683,7 @@ Our Ensete Knowledge Base is a repository of information, sharing knowledge on E
     biotools:primaryContact "ENZYME helpdesk" .
 
 <https://bio.tools/enzyme_portal> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0821 ;
     sc:citation <https://doi.org/10.1186/1471-2105-14-103> ;
@@ -186912,22 +185699,21 @@ Our Ensete Knowledge Base is a repository of information, sharing knowledge on E
 
 <https://bio.tools/enzymeminer> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1233" ;
-            sc:name "Sequence set (protein)" ;
-            sc:sameAs "http://edamontology.org/data_1233" ],
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:encodingFormat "http://edamontology.org/format_3620" ;
+            sc:name "Protein features" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1245" ;
-            sc:name "Sequence cluster (protein)" ;
-            sc:sameAs "http://edamontology.org/data_1245" ],
+            sc:additionalType "http://edamontology.org/data_1245" ;
+            sc:name "Sequence cluster (protein)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1233" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence set (protein)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -186973,7 +185759,7 @@ Our Ensete Knowledge Base is a repository of information, sharing knowledge on E
     biotools:primaryContact "EnzymeMiner team" .
 
 <https://bio.tools/enzymeportal_protein_sequence_search> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0821 ;
     sc:citation <https://doi.org/10.1186/1471-2105-14-103> ;
@@ -186991,7 +185777,7 @@ Our Ensete Knowledge Base is a repository of information, sharing knowledge on E
     biotools:primaryContact "Henning Hermjakob" .
 
 <https://bio.tools/enzymine> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0602,
         edam:topic_0821,
@@ -187010,7 +185796,7 @@ Our Ensete Knowledge Base is a repository of information, sharing knowledge on E
     sc:url "http://www.rxnfinder.org/enzymine/" .
 
 <https://bio.tools/eorna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0203,
         edam:topic_3170,
@@ -187030,262 +185816,256 @@ EoRNA is a Barley Expression Database that displays gene and transcript abundanc
 
 <https://bio.tools/eosc_pipeline-reproducibility> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ],
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence variations" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ],
+            sc:additionalType "http://edamontology.org/data_3497" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "DNA sequence (raw)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1383" ;
-            sc:name "Sequence alignment (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1383" ],
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence variations" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1383" ;
-            sc:name "Sequence alignment (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1383" ],
+            sc:additionalType "http://edamontology.org/data_1383" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Sequence alignment (nucleic acid)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ],
+            sc:additionalType "http://edamontology.org/data_1383" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Sequence alignment (nucleic acid)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1383" ;
-            sc:name "Sequence alignment (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1383" ],
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence variations" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ],
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
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         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1383" ;
-            sc:name "Sequence alignment (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1383" ],
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ],
+            sc:additionalType "http://edamontology.org/data_2012" ;
+            sc:encodingFormat "http://edamontology.org/format_3003" ;
+            sc:name "Sequence coordinates" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1383" ;
-            sc:name "Sequence alignment (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1383" ],
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
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         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ],
+            sc:additionalType "http://edamontology.org/data_0955" ;
+            sc:name "Data index" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3210" ;
-            sc:name "Genome index" ;
-            sc:sameAs "http://edamontology.org/data_3210" ],
+            sc:additionalType "http://edamontology.org/data_1383" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Sequence alignment (nucleic acid)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ],
+            sc:additionalType "http://edamontology.org/data_1383" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Sequence alignment (nucleic acid)" ],
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-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ],
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ],
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-            sc:identifier "http://edamontology.org/data_1383" ;
-            sc:name "Sequence alignment (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1383" ],
+            sc:additionalType "http://edamontology.org/data_1383" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Sequence alignment (nucleic acid)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3497" ;
-            sc:name "DNA sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_3497" ],
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
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-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ],
+            sc:additionalType "http://edamontology.org/data_1383" ;
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+            sc:additionalType "http://edamontology.org/data_1383" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
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-            sc:identifier "http://edamontology.org/data_1383" ;
-            sc:name "Sequence alignment (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1383" ],
+            sc:additionalType "http://edamontology.org/data_1772" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
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-            sc:name "Genome index" ;
-            sc:sameAs "http://edamontology.org/data_3210" ],
+            sc:additionalType "http://edamontology.org/data_1383" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Sequence alignment (nucleic acid)" ],
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-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ],
+            sc:additionalType "http://edamontology.org/data_1383" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Sequence alignment (nucleic acid)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2012" ;
-            sc:name "Sequence coordinates" ;
-            sc:sameAs "http://edamontology.org/data_2012" ],
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence variations" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1383" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Sequence alignment (nucleic acid)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Script",
         "Workflow" ;
@@ -187313,14 +186093,13 @@ EoRNA is a Barley Expression Database that displays gene and transcript abundanc
 
 <https://bio.tools/ep3> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2749" ;
-            sc:name "Genome identifier" ;
-            sc:sameAs "http://edamontology.org/data_2749" ] ;
+            sc:additionalType "http://edamontology.org/data_2749" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Genome identifier" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2070" ;
-            sc:name "Sequence motif (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_2070" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2070" ;
+            sc:name "Sequence motif (nucleic acid)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_3511 ;
@@ -187337,7 +186116,7 @@ EoRNA is a Barley Expression Database that displays gene and transcript abundanc
     sc:url "http://bioinformatics.psb.ugent.be/software/details/EP3" .
 
 <https://bio.tools/ep3-secretion> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3361,
@@ -187353,14 +186132,14 @@ EoRNA is a Barley Expression Database that displays gene and transcript abundanc
     sc:url "http://lab.malab.cn/~lijing/EP3.html" .
 
 <https://bio.tools/epacts> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "EPACTS (Efficient and Parallelizable Association Container Toolbox) is a versatile software pipeline to perform various statistical tests for identifying genome-wide association from sequence data through a user-friendly interface, both to scientific analysts and to method developers." ;
     sc:featureList edam:operation_2238 ;
     sc:name "EPACTS" ;
     sc:url "https://genome.sph.umich.edu/wiki/EPACTS" .
 
 <https://bio.tools/epad> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2814 ;
     sc:citation <https://doi.org/10.1016/j.str.2012.04.003> ;
@@ -187370,8 +186149,49 @@ EoRNA is a Barley Expression Database that displays gene and transcript abundanc
     sc:operatingSystem "Linux" ;
     sc:url "http://ttic.uchicago.edu/~jinbo/software/EPAD_guide.html" .
 
+<https://bio.tools/epb> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Suite" ;
+    sc:applicationSubCategory edam:topic_0128,
+        edam:topic_0154,
+        edam:topic_0176,
+        edam:topic_2275,
+        edam:topic_3047 ;
+    sc:citation <https://doi.org/10.1039/D0RA01483D>,
+        "pmcid:PMC9052371",
+        "pubmed:35495446" ;
+    sc:description "A Effective Polarizable Bond method" ;
+    sc:featureList edam:operation_0478,
+        edam:operation_2476,
+        edam:operation_4009 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "EPB" ;
+    sc:operatingSystem "Linux",
+        "Mac" ;
+    sc:url "https://github.com/Xundrug/EPB" .
+
+<https://bio.tools/epc-net> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1109/TIP.2021.3136714>,
+        "pubmed:34982682" ;
+    sc:description "Efficient 3D Point Cloud Feature Learning for Large-Scale Place Recognition (EPC-Net)" ;
+    sc:featureList edam:operation_2422,
+        edam:operation_3436,
+        edam:operation_3937 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "EPC-Net" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/fpthink/EPC-Net" .
+
 <https://bio.tools/epces> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0166 ;
     sc:citation <https://doi.org/10.1002/prot.21498> ;
@@ -187382,7 +186202,7 @@ EoRNA is a Barley Expression Database that displays gene and transcript abundanc
     sc:url "http://sysbio.unl.edu/EPCES" .
 
 <https://bio.tools/epd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0749 ;
@@ -187402,18 +186222,15 @@ EoRNA is a Barley Expression Database that displays gene and transcript abundanc
 
 <https://bio.tools/epestfind> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1505" ;
-            sc:name "Amino acid index (molecular weight)" ;
-            sc:sameAs "http://edamontology.org/data_1505" ],
+            sc:additionalType "http://edamontology.org/data_2886" ;
+            sc:name "Protein sequence record" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2886" ;
-            sc:name "Protein sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2886" ] ;
+            sc:additionalType "http://edamontology.org/data_1505" ;
+            sc:name "Amino acid index (molecular weight)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:name "Protein features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0160 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -187443,7 +186260,7 @@ EoRNA is a Barley Expression Database that displays gene and transcript abundanc
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/epestfind.html" .
 
 <https://bio.tools/epga> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API",
         "Web application",
         "Web service" ;
@@ -187468,7 +186285,7 @@ EoRNA is a Barley Expression Database that displays gene and transcript abundanc
         "George Potamias" .
 
 <https://bio.tools/epharmalib> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0621,
@@ -187486,7 +186303,7 @@ EoRNA is a Barley Expression Database that displays gene and transcript abundanc
     sc:url "http://www.pharmbioinf.uni-freiburg.de/epharmalib" .
 
 <https://bio.tools/epiGeEC> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3169,
         edam:topic_3173 ;
@@ -187503,7 +186320,7 @@ EoRNA is a Barley Expression Database that displays gene and transcript abundanc
     biotools:primaryContact "Pierre-Étienne Jacques" .
 
 <https://bio.tools/epiScanpy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_2229,
@@ -187524,7 +186341,7 @@ EoRNA is a Barley Expression Database that displays gene and transcript abundanc
         "Maria Colomé-Tatché" .
 
 <https://bio.tools/epiTAD> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_2885,
@@ -187546,7 +186363,7 @@ EoRNA is a Barley Expression Database that displays gene and transcript abundanc
     biotools:primaryContact "Garrick Aden-Buie" .
 
 <https://bio.tools/epianno> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_2885,
@@ -187567,7 +186384,7 @@ EoRNA is a Barley Expression Database that displays gene and transcript abundanc
     biotools:primaryContact "Hsuan-Yu Chen" .
 
 <https://bio.tools/epiannotator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0097,
@@ -187585,8 +186402,31 @@ EoRNA is a Barley Expression Database that displays gene and transcript abundanc
     sc:url "http://computational-epigenomics.com/en/epiannotator" ;
     biotools:primaryContact "Support" .
 
+<https://bio.tools/epibuilder> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Desktop application" ;
+    sc:applicationSubCategory edam:topic_0121,
+        edam:topic_0154,
+        edam:topic_0196,
+        edam:topic_2830,
+        edam:topic_3948 ;
+    sc:citation <https://doi.org/10.1177/11779322221095221>,
+        "pmcid:PMC9102138",
+        "pubmed:35571557" ;
+    sc:description "A Tool for Assembling, Searching, and Classifying B-Cell Epitopes" ;
+    sc:featureList edam:operation_0252,
+        edam:operation_0310,
+        edam:operation_0416,
+        edam:operation_3431 ;
+    sc:license "Not licensed" ;
+    sc:name "EpiBuilder" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://epibuilder.sourceforge.io" .
+
 <https://bio.tools/epic> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -187604,8 +186444,28 @@ EoRNA is a Barley Expression Database that displays gene and transcript abundanc
     sc:name "EPIC" ;
     sc:url "https://github.com/GfellerLab/EPIC" .
 
+<https://bio.tools/epicker> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Desktop application" ;
+    sc:applicationSubCategory edam:topic_3306,
+        edam:topic_3382,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1038/S41467-022-29994-Y>,
+        "pmcid:PMC9072698",
+        "pubmed:35513367" ;
+    sc:description "EPicker is an exemplar-based continual learning approach for knowledge accumulation in cryoEM particle picking." ;
+    sc:featureList edam:operation_3458,
+        edam:operation_3927,
+        edam:operation_3937 ;
+    sc:license "GPL-3.0" ;
+    sc:name "EPicker" ;
+    sc:operatingSystem "Linux",
+        "Mac" ;
+    sc:softwareHelp <http://thuem.net/software/epicker/tutorial.html> ;
+    sc:url "http://thuem.net/" .
+
 <https://bio.tools/epiclass> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_2269,
@@ -187626,7 +186486,7 @@ EoRNA is a Barley Expression Database that displays gene and transcript abundanc
     sc:url "https://github.com/Elnitskilab/EpiClass" .
 
 <https://bio.tools/epiclomal> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0102,
@@ -187646,7 +186506,7 @@ EoRNA is a Barley Expression Database that displays gene and transcript abundanc
     sc:url "https://github.com/shahcompbio/Epiclomal" .
 
 <https://bio.tools/epico-data-analysis-portal> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Bioinformatics portal",
         "Command-line tool",
         "Library",
@@ -187664,7 +186524,7 @@ EoRNA is a Barley Expression Database that displays gene and transcript abundanc
     sc:url "https://github.com/inab/epico-data-analysis-portal/wiki" .
 
 <https://bio.tools/epicoloc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0749,
@@ -187684,7 +186544,7 @@ EoRNA is a Barley Expression Database that displays gene and transcript abundanc
     sc:url "http://mulinlab.org/epicoloc" .
 
 <https://bio.tools/epicontacts> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3305 ;
     sc:citation <https://doi.org/10.12688/f1000research.14492.1> ;
@@ -187700,8 +186560,31 @@ EoRNA is a Barley Expression Database that displays gene and transcript abundanc
     sc:url "http://www.repidemicsconsortium.org/epicontacts/" ;
     biotools:primaryContact "VP Nagraj" .
 
+<https://bio.tools/epiconv> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_2229,
+        edam:topic_3170,
+        edam:topic_3295,
+        edam:topic_3308,
+        edam:topic_3656 ;
+    sc:citation <https://doi.org/10.1186/S12859-022-04858-W>,
+        "pmcid:PMC9338487",
+        "pubmed:35906531" ;
+    sc:description "EpiConv is an algorithm of clustering scATAC-seq data and correcting batch effects." ;
+    sc:featureList edam:operation_3222,
+        edam:operation_3432,
+        edam:operation_3435 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "epiConv" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/LiLin-biosoft/epiConv" .
+
 <https://bio.tools/epidb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3173 ;
@@ -187717,7 +186600,7 @@ EoRNA is a Barley Expression Database that displays gene and transcript abundanc
     sc:url "https://epidb.animalgenome.org" .
 
 <https://bio.tools/epidemic-management-toolbox> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3305,
@@ -187733,7 +186616,7 @@ EoRNA is a Barley Expression Database that displays gene and transcript abundanc
     biotools:primaryContact "Jens Kappey" .
 
 <https://bio.tools/epidish> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3295,
         edam:topic_3518 ;
@@ -187754,7 +186637,7 @@ EoRNA is a Barley Expression Database that displays gene and transcript abundanc
     biotools:primaryContact "Shijie Charles Zheng" .
 
 <https://bio.tools/epidope> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -187772,8 +186655,48 @@ EoRNA is a Barley Expression Database that displays gene and transcript abundanc
         "Mac" ;
     sc:url "http://github.com/mcollatz/EpiDope" .
 
+<https://bio.tools/epifactors> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0659,
+        edam:topic_3047,
+        edam:topic_3173,
+        edam:topic_3366 ;
+    sc:citation <https://doi.org/10.1093/database/bav067>,
+        "pmcid:PMC4494013",
+        "pubmed:26153137" ;
+    sc:description "EpiFactors is a database for epigenetic factors such as histones, protamines, other proteins and lncRNAs.  It compiles functional information about human and mouse epigenetic regulators, their complexes, and expression in multiple cell types to facilitate the work of researchers in the field of epigenetics." ;
+    sc:featureList edam:operation_3431 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Freeware" ;
+    sc:name "EpiFactors" ;
+    sc:url "https://epifactors.autosome.org/" ;
+    biotools:primaryContact <https://orcid.org/0000-0002-7587-1666> .
+
+<https://bio.tools/epifilter> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workbench" ;
+    sc:applicationSubCategory edam:topic_2269,
+        edam:topic_3305,
+        edam:topic_3324 ;
+    sc:citation <https://doi.org/10.1371/JOURNAL.PCBI.1009347>,
+        "pmcid:PMC8448340",
+        "pubmed:34492011" ;
+    sc:description """Improved estimation of time-varying reproduction numbers at low case incidence and between epidemic waves.
+
+Main functions: epiFilter (or epiFilterSm) performs forward filtering to generate causal R estimates; epiSmooth performs backward smoothing to generate R estimates that use all possible information and recursPredict provides one-step-ahead predictions.""" ;
+    sc:featureList edam:operation_3435,
+        edam:operation_3503,
+        edam:operation_3695 ;
+    sc:isAccessibleForFree true ;
+    sc:name "EpiFilter" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/kpzoo/EpiFilter" .
+
 <https://bio.tools/epiflows> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3305,
         edam:topic_3324 ;
     sc:citation <https://doi.org/10.12688/F1000RESEARCH.16032.3>,
@@ -187786,20 +186709,8 @@ EoRNA is a Barley Expression Database that displays gene and transcript abundanc
     sc:softwareHelp <https://cran.r-project.org/web/packages/epiflows/epiflows.pdf> ;
     sc:url "https://www.repidemicsconsortium.org/epiflows" .
 
-<https://bio.tools/epiflows_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3305,
-        edam:topic_3324 ;
-    sc:citation <https://doi.org/10.12688/F1000RESEARCH.16032.3>,
-        "pmcid:PMC6738191",
-        "pubmed:31543947" ;
-    sc:description "an R package for risk assessment of travel-related spread of disease | ☣✈️ Risk assessment of travel-related disease spread | Predicting Disease Spread from Flow Data | Welcome to the epiflows package! | epiflows is a package for predicting and visualising spread of infectious diseases based on flows between geographical locations, e.g., countries. epiflows provides functions for calculating spread estimates, handling flow data, and visualization | Provides functions and classes designed to handle and visualise epidemiological flows between locations. Also contains a statistical method for predicting disease spread from flow data initially described in Dorigatti et al. (2017) <doi:10.2807/1560-7917.ES.2017.22.28.30572>. This package is part of the RECON (<http://www.repidemicsconsortium.org/>) toolkit for outbreak analysis" ;
-    sc:featureList edam:operation_0337 ;
-    sc:license "MIT" ;
-    sc:name "epiflows_autogenerated" ;
-    sc:url "https://www.repidemicsconsortium.org/epiflows" .
-
 <https://bio.tools/epig-seq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2640,
@@ -187819,7 +186730,7 @@ EoRNA is a Barley Expression Database that displays gene and transcript abundanc
     biotools:primaryContact "Pierre R. Bushel" .
 
 <https://bio.tools/epigbs2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_0821,
@@ -187838,7 +186749,7 @@ EoRNA is a Barley Expression Database that displays gene and transcript abundanc
     sc:url "https://github.com/nioo-knaw/epiGBS2" .
 
 <https://bio.tools/epigen> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0625,
         edam:topic_0769,
@@ -187855,7 +186766,7 @@ EoRNA is a Barley Expression Database that displays gene and transcript abundanc
     sc:url "https://github.com/baumbachlab/epigen" .
 
 <https://bio.tools/epigencentral> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Bioinformatics portal" ;
     sc:applicationSubCategory edam:topic_3295,
         edam:topic_3325,
@@ -187872,7 +186783,7 @@ EoRNA is a Barley Expression Database that displays gene and transcript abundanc
     sc:url "http://epigen.ccm.sickkids.ca/" .
 
 <https://bio.tools/epigenetic-pacemaker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0625,
@@ -187891,7 +186802,7 @@ EoRNA is a Barley Expression Database that displays gene and transcript abundanc
     sc:url "https://pypi.org/project/EpigeneticPacemaker/" .
 
 <https://bio.tools/epigenetic-target-profiler> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3047,
@@ -187910,7 +186821,7 @@ EoRNA is a Barley Expression Database that displays gene and transcript abundanc
         <https://orcid.org/0000-0003-4940-1107> .
 
 <https://bio.tools/epigenomix> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3169,
@@ -187933,7 +186844,7 @@ EoRNA is a Barley Expression Database that displays gene and transcript abundanc
     biotools:primaryContact <http://orcid.org/0000-0002-6382-9428> .
 
 <https://bio.tools/epigraph> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_3173,
         edam:topic_3474 ;
@@ -187948,7 +186859,7 @@ EoRNA is a Barley Expression Database that displays gene and transcript abundanc
     biotools:primaryContact "Dr. Joachim Büch" .
 
 <https://bio.tools/epigraph-image> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_3382 ;
@@ -187960,7 +186871,7 @@ EoRNA is a Barley Expression Database that displays gene and transcript abundanc
     sc:url "https://imagej.net/EpiGraph" .
 
 <https://bio.tools/epigraphdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Bioinformatics portal",
         "Database portal",
         "Library",
@@ -187980,7 +186891,7 @@ EoRNA is a Barley Expression Database that displays gene and transcript abundanc
     sc:url "https://epigraphdb.org/" .
 
 <https://bio.tools/epihet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3295,
@@ -188002,7 +186913,7 @@ EoRNA is a Barley Expression Database that displays gene and transcript abundanc
     biotools:primaryContact "Sheng Li" .
 
 <https://bio.tools/epilog> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2259 ;
@@ -188018,7 +186929,7 @@ EoRNA is a Barley Expression Database that displays gene and transcript abundanc
     sc:url "http://epilog-tool.org/" .
 
 <https://bio.tools/epimetal> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0153,
@@ -188038,7 +186949,7 @@ EoRNA is a Barley Expression Database that displays gene and transcript abundanc
     sc:url "http://EpiMetal.computationalmedicine.fi" .
 
 <https://bio.tools/epimir> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0659,
@@ -188057,7 +186968,7 @@ EoRNA is a Barley Expression Database that displays gene and transcript abundanc
     biotools:primaryContact "Support" .
 
 <https://bio.tools/epimodel> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3324,
@@ -188078,7 +186989,7 @@ EoRNA is a Barley Expression Database that displays gene and transcript abundanc
     biotools:primaryContact "Samuel Jenness" .
 
 <https://bio.tools/epimolas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3168,
@@ -188097,7 +187008,7 @@ EoRNA is a Barley Expression Database that displays gene and transcript abundanc
     sc:url "http://symbiosis.iis.sinica.edu.tw/epimolas/" .
 
 <https://bio.tools/epimox> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3299,
         edam:topic_3305,
@@ -188114,7 +187025,7 @@ EoRNA is a Barley Expression Database that displays gene and transcript abundanc
     sc:url "https://www.epimox.polimi.it" .
 
 <https://bio.tools/epimut> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0199,
@@ -188130,8 +187041,27 @@ EoRNA is a Barley Expression Database that displays gene and transcript abundanc
     sc:softwareHelp <https://www.vin.bg.ac.rs/180/tools/epimut/download_file.php?id=2> ;
     sc:url "https://www.vin.bg.ac.rs/180/tools/epimut.php" .
 
+<https://bio.tools/epimutestr> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workflow" ;
+    sc:applicationSubCategory edam:topic_0199,
+        edam:topic_2640,
+        edam:topic_3293,
+        edam:topic_3474,
+        edam:topic_3974 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAC215>,
+        "pubmed:35412634" ;
+    sc:description "A nearest neighbor machine learning approach to predict cancer driver genes from the evolutionary action of coding variants." ;
+    sc:featureList edam:operation_2454,
+        edam:operation_3196,
+        edam:operation_3227 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "EPIMUTESTR" ;
+    sc:url "https://github.com/LichtargeLab/EPIMUTESTR" .
+
 <https://bio.tools/epinano> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_3170,
@@ -188149,7 +187079,7 @@ EoRNA is a Barley Expression Database that displays gene and transcript abundanc
     sc:url "https://github.com/enovoa/EpiNano" .
 
 <https://bio.tools/epinem> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2259 ;
@@ -188168,7 +187098,7 @@ EoRNA is a Barley Expression Database that displays gene and transcript abundanc
     biotools:primaryContact "Martin Pirkl" .
 
 <https://bio.tools/epiregio> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web API" ;
     sc:applicationSubCategory edam:topic_0204,
@@ -188190,7 +187120,7 @@ EoRNA is a Barley Expression Database that displays gene and transcript abundanc
     sc:url "https://epiregio.de/" .
 
 <https://bio.tools/epiromics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3169,
@@ -188211,7 +187141,7 @@ EoRNA is a Barley Expression Database that displays gene and transcript abundanc
     sc:url "https://github.com/Huising-Lab/epiRomics" .
 
 <https://bio.tools/episcore> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_2229,
@@ -188232,7 +187162,7 @@ EoRNA is a Barley Expression Database that displays gene and transcript abundanc
     sc:url "https://github.com/aet21/EpiSCORE" .
 
 <https://bio.tools/episfa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0602,
@@ -188248,8 +187178,31 @@ EoRNA is a Barley Expression Database that displays gene and transcript abundanc
     sc:name "EPISFA" ;
     sc:url "https://github.com/doublexism/episfa" .
 
+<https://bio.tools/episurf> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0736,
+        edam:topic_2830,
+        edam:topic_3305,
+        edam:topic_3966 ;
+    sc:citation <https://doi.org/10.1093/DATABASE/BAAB059>,
+        "pmcid:PMC8500151",
+        "pubmed:34585726" ;
+    sc:description "Metadata-driven search server for analyzing amino acid changes within epitopes of SARS-CoV-2 and other viral species." ;
+    sc:featureList edam:operation_0416,
+        edam:operation_2421,
+        edam:operation_3431 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "EpiSurf" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://gmql.eu/episurf/" .
+
 <https://bio.tools/epitoc2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_2640,
@@ -188267,7 +187220,7 @@ EoRNA is a Barley Expression Database that displays gene and transcript abundanc
     sc:url "https://doi.org/10.5281/zenodo.2632938" .
 
 <https://bio.tools/epitoolkit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0625,
@@ -188283,16 +187236,33 @@ EoRNA is a Barley Expression Database that displays gene and transcript abundanc
     sc:url "http://www.epitoolkit.de/" ;
     biotools:primaryContact "Oliver Kohlbacher" .
 
+<https://bio.tools/epitopedia> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0078,
+        edam:topic_3966,
+        edam:topic_3967 ;
+    sc:citation <https://doi.org/10.1101/2021.08.26.457577> ;
+    sc:description "Epitopedia: identifying molecular mimicry of known immune epitopes." ;
+    sc:featureList edam:operation_0416 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "Epitopedia" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/cbalbin-FIU/Epitopedia" .
+
 <https://bio.tools/epitopepredict> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2886" ;
-            sc:name "Protein sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2886" ] ;
+            sc:additionalType "http://edamontology.org/data_2886" ;
+            sc:encodingFormat "http://edamontology.org/format_2205" ;
+            sc:name "Protein sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Protein features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3534 ;
     sc:author <https://orcid.org/0000-0003-3020-7945> ;
@@ -188307,7 +187277,7 @@ EoRNA is a Barley Expression Database that displays gene and transcript abundanc
     sc:url "https://github.com/dmnfarrell/epitopepredict" .
 
 <https://bio.tools/epitopevec> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -188330,7 +187300,7 @@ EpitopeVec predicts linear B-cell epitopes. It takes protein sequences (FASTA fo
     sc:url "https://github.com/hzi-bifo/epitope-prediction" .
 
 <https://bio.tools/epivia> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_2830,
@@ -188348,8 +187318,31 @@ EpitopeVec predicts linear B-cell epitopes. It takes protein sequences (FASTA fo
     sc:name "EpiVIA" ;
     sc:url "https://github.com/VahediLab/epiVIA" .
 
+<https://bio.tools/epivisr> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0632,
+        edam:topic_0654,
+        edam:topic_3173,
+        edam:topic_3518 ;
+    sc:citation <https://doi.org/10.1186/S12859-022-04836-2>,
+        "pmcid:PMC9308245",
+        "pubmed:35870905" ;
+    sc:description "A Tool for Exploratory Data Analysis and Visualisation within Epigenome Wide Methylation Analyses (EWAS)." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3204,
+        edam:operation_3435 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Other" ;
+    sc:name "EpiVisR" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/SteRoe/EpiVisR" .
+
 <https://bio.tools/epiviz-feed> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2269,
@@ -188365,7 +187358,7 @@ EpitopeVec predicts linear B-cell epitopes. It takes protein sequences (FASTA fo
     sc:url "https://github.com/epiviz/epiviz-feed-computation" .
 
 <https://bio.tools/epivizFileServer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_0769,
@@ -188385,7 +187378,7 @@ EpitopeVec predicts linear B-cell epitopes. It takes protein sequences (FASTA fo
     biotools:primaryContact "Hector Corrada Bravo" .
 
 <https://bio.tools/epivizr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0622 ;
@@ -188404,7 +187397,7 @@ EpitopeVec predicts linear B-cell epitopes. It takes protein sequences (FASTA fo
     biotools:primaryContact "Hector Corrada Bravo" .
 
 <https://bio.tools/epivizrchart> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0622 ;
     sc:description "API for interactive visualization of genomic data using epiviz web components. Objects in R/BioConductor can be used to generate interactive R markdown/notebook documents or can be visualized in the R Studio's default viewer." ;
@@ -188421,7 +187414,7 @@ EpitopeVec predicts linear B-cell epitopes. It takes protein sequences (FASTA fo
     biotools:primaryContact "Hector Corrada Bravo" .
 
 <https://bio.tools/epivizrdata> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3071 ;
@@ -188439,7 +187432,7 @@ EpitopeVec predicts linear B-cell epitopes. It takes protein sequences (FASTA fo
     biotools:primaryContact "Hector Corrada Bravo" .
 
 <https://bio.tools/epivizrserver> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3071 ;
@@ -188457,7 +187450,7 @@ EpitopeVec predicts linear B-cell epitopes. It takes protein sequences (FASTA fo
     biotools:primaryContact "Hector Corrada Bravo" .
 
 <https://bio.tools/epivizrstandalone> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -188475,8 +187468,31 @@ EpitopeVec predicts linear B-cell epitopes. It takes protein sequences (FASTA fo
     sc:url "http://bioconductor.org/packages/release/bioc/html/epivizrStandalone.html" ;
     biotools:primaryContact "Hector Corrada Bravo" .
 
+<https://bio.tools/epixplorer> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0749,
+        edam:topic_2885,
+        edam:topic_3173,
+        edam:topic_3517,
+        edam:topic_3940 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAC397>,
+        "pmcid:PMC9252822",
+        "pubmed:35639508" ;
+    sc:description "A web server for prediction, analysis and visualization of enhancer-promoter interactions." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_0440,
+        edam:operation_3661 ;
+    sc:license "Not licensed" ;
+    sc:name "EPIXplorer" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://www.csuligroup.com/EPIXplorer/Tutorial> ;
+    sc:url "https://www.csuligroup.com/EPIXplorer" .
+
 <https://bio.tools/eplant> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0199,
@@ -188502,7 +187518,7 @@ EpitopeVec predicts linear B-cell epitopes. It takes protein sequences (FASTA fo
     biotools:primaryContact "Jamie Waese" .
 
 <https://bio.tools/epmv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0176,
         edam:topic_2275,
@@ -188524,7 +187540,7 @@ EpitopeVec predicts linear B-cell epitopes. It takes protein sequences (FASTA fo
     biotools:primaryContact "ePMV Support (Subject:  [ePMV])" .
 
 <https://bio.tools/epoch> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0749,
@@ -188542,7 +187558,7 @@ EpitopeVec predicts linear B-cell epitopes. It takes protein sequences (FASTA fo
     biotools:primaryContact <https://orcid.org/0000-0003-3652-2540> .
 
 <https://bio.tools/eponine> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0654,
@@ -188564,22 +187580,18 @@ EpitopeVec predicts linear B-cell epitopes. It takes protein sequences (FASTA fo
 
 <https://bio.tools/eprimer3> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0850" ;
-            sc:name "Sequence set" ;
-            sc:sameAs "http://edamontology.org/data_0850" ],
+            sc:additionalType "http://edamontology.org/data_0850" ;
+            sc:name "Sequence set" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0850" ;
-            sc:name "Sequence set" ;
-            sc:sameAs "http://edamontology.org/data_0850" ],
+            sc:additionalType "http://edamontology.org/data_2887" ;
+            sc:name "Nucleic acid sequence record" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2887" ;
-            sc:name "Nucleic acid sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2887" ] ;
+            sc:additionalType "http://edamontology.org/data_0850" ;
+            sc:name "Sequence set" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1276" ;
-            sc:name "Nucleic acid features" ;
-            sc:sameAs "http://edamontology.org/data_1276" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1276" ;
+            sc:name "Nucleic acid features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -188611,22 +187623,18 @@ EpitopeVec predicts linear B-cell epitopes. It takes protein sequences (FASTA fo
 
 <https://bio.tools/eprimer32> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2887" ;
-            sc:name "Nucleic acid sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2887" ],
+            sc:additionalType "http://edamontology.org/data_0850" ;
+            sc:name "Sequence set" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0850" ;
-            sc:name "Sequence set" ;
-            sc:sameAs "http://edamontology.org/data_0850" ],
+            sc:additionalType "http://edamontology.org/data_0850" ;
+            sc:name "Sequence set" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0850" ;
-            sc:name "Sequence set" ;
-            sc:sameAs "http://edamontology.org/data_0850" ] ;
+            sc:additionalType "http://edamontology.org/data_2887" ;
+            sc:name "Nucleic acid sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1276" ;
-            sc:name "Nucleic acid features" ;
-            sc:sameAs "http://edamontology.org/data_1276" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1276" ;
+            sc:name "Nucleic acid features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -188657,7 +187665,7 @@ EpitopeVec predicts linear B-cell epitopes. It takes protein sequences (FASTA fo
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/eprimer32.html" .
 
 <https://bio.tools/eprobalign> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_2269,
@@ -188672,7 +187680,7 @@ EpitopeVec predicts linear B-cell epitopes. It takes protein sequences (FASTA fo
     biotools:primaryContact "Usman Roshan" .
 
 <https://bio.tools/epruner> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_3316 ;
     sc:citation <https://doi.org/10.1109/TNNLS.2021.3084856>,
@@ -188686,7 +187694,7 @@ EpitopeVec predicts linear B-cell epitopes. It takes protein sequences (FASTA fo
     sc:url "https://github.com/lmbxmu/EPruner" .
 
 <https://bio.tools/eps> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Script" ;
     sc:applicationSubCategory edam:topic_3053,
@@ -188705,7 +187713,7 @@ EpitopeVec predicts linear B-cell epitopes. It takes protein sequences (FASTA fo
         "José Luis Ambite" .
 
 <https://bio.tools/epsd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -188725,14 +187733,12 @@ EpitopeVec predicts linear B-cell epitopes. It takes protein sequences (FASTA fo
 
 <https://bio.tools/epsilon> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Gene expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ] ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:name "Gene expression data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:name "Pathway or network" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0602 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btt142> ;
@@ -188748,7 +187754,7 @@ EpitopeVec predicts linear B-cell epitopes. It takes protein sequences (FASTA fo
     sc:url "http://bioinformatics.intec.ugent.be/epsilon/index.html" .
 
 <https://bio.tools/epsol> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0203,
@@ -188766,7 +187772,7 @@ EpitopeVec predicts linear B-cell epitopes. It takes protein sequences (FASTA fo
     sc:url "https://github.com/LiangYu-Xidian/EPSOL" .
 
 <https://bio.tools/epsvr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0166,
@@ -188783,7 +187789,7 @@ EpitopeVec predicts linear B-cell epitopes. It takes protein sequences (FASTA fo
     sc:url "http://sysbio.unl.edu/EPSVR/" .
 
 <https://bio.tools/eptool> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_3474,
@@ -188798,7 +187804,7 @@ EpitopeVec predicts linear B-cell epitopes. It takes protein sequences (FASTA fo
     sc:url "https://github.com/xiaozhi0689/EPTool" .
 
 <https://bio.tools/epx> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3336,
@@ -188816,7 +187822,7 @@ EpitopeVec predicts linear B-cell epitopes. It takes protein sequences (FASTA fo
     sc:url "https://CRAN.R-project.org/package=EPX" .
 
 <https://bio.tools/epypes> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Workbench" ;
     sc:applicationSubCategory edam:topic_0769 ;
@@ -188830,7 +187836,7 @@ EpitopeVec predicts linear B-cell epitopes. It takes protein sequences (FASTA fo
     biotools:primaryContact "Oleksandr Semeniuta" .
 
 <https://bio.tools/epyseg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Library" ;
     sc:applicationSubCategory edam:topic_0108,
@@ -188844,7 +187850,7 @@ EpitopeVec predicts linear B-cell epitopes. It takes protein sequences (FASTA fo
     sc:url "https://github.com/baigouy/EPySeg" .
 
 <https://bio.tools/eqscore> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3360,
         edam:topic_3379,
@@ -188862,7 +187868,7 @@ EpitopeVec predicts linear B-cell epitopes. It takes protein sequences (FASTA fo
     sc:url "http://lab.rockefeller.edu/krueger/EQScore" .
 
 <https://bio.tools/eqtl-catalogue> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0769,
@@ -188881,7 +187887,7 @@ EpitopeVec predicts linear B-cell epitopes. It takes protein sequences (FASTA fo
     sc:url "https://www.ebi.ac.uk/eqtl/" .
 
 <https://bio.tools/eqtlbma> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102 ;
     sc:citation <https://doi.org/10.1371/journal.pgen.1003486> ;
@@ -188897,7 +187903,7 @@ EpitopeVec predicts linear B-cell epitopes. It takes protein sequences (FASTA fo
     sc:url "https://github.com/timflutre/eqtlbma/wiki" .
 
 <https://bio.tools/eqtlhap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0625,
@@ -188916,7 +187922,7 @@ EpitopeVec predicts linear B-cell epitopes. It takes protein sequences (FASTA fo
     sc:url "https://github.com/ziadbkh/eQTLHap" .
 
 <https://bio.tools/eqtlmapt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0625,
@@ -188934,7 +187940,7 @@ EpitopeVec predicts linear B-cell epitopes. It takes protein sequences (FASTA fo
     sc:url "https://github.com/QidiPeng/eQTLMAPT" .
 
 <https://bio.tools/eqtlseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0203,
@@ -188951,7 +187957,7 @@ EpitopeVec predicts linear B-cell epitopes. It takes protein sequences (FASTA fo
     biotools:primaryContact "Dimitris Vavoulis" .
 
 <https://bio.tools/eqtlsingle> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0203,
@@ -188974,7 +187980,7 @@ Discovering single-cell eQTLs from scRNA-seq data only.""" ;
     sc:url "https://github.com/horsedayday/eQTLsingle" .
 
 <https://bio.tools/eqtnminer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0203,
@@ -188988,7 +187994,7 @@ Discovering single-cell eQTLs from scRNA-seq data only.""" ;
     sc:url "http://eqtnminer.sourceforge.net/" .
 
 <https://bio.tools/eqtplot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0625,
@@ -189004,7 +188010,7 @@ Discovering single-cell eQTLs from scRNA-seq data only.""" ;
     sc:url "https://github.com/RitchieLab/eQTpLot" .
 
 <https://bio.tools/equaltdrl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3127 ;
@@ -189019,14 +188025,12 @@ Discovering single-cell eQTLs from scRNA-seq data only.""" ;
 
 <https://bio.tools/equicktandem> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2887" ;
-            sc:name "Nucleic acid sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2887" ] ;
+            sc:additionalType "http://edamontology.org/data_2887" ;
+            sc:name "Nucleic acid sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2955" ;
-            sc:name "Sequence report" ;
-            sc:sameAs "http://edamontology.org/data_2955" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2955" ;
+            sc:name "Sequence report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0157 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -189056,7 +188060,7 @@ Discovering single-cell eQTLs from scRNA-seq data only.""" ;
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/equicktandem.html" .
 
 <https://bio.tools/equilibrator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0123,
@@ -189076,7 +188080,7 @@ Discovering single-cell eQTLs from scRNA-seq data only.""" ;
     biotools:primaryContact "eQuilibrator Forum" .
 
 <https://bio.tools/equisim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3474 ;
@@ -189094,7 +188098,7 @@ Discovering single-cell eQTLs from scRNA-seq data only.""" ;
         "Jeroen Van Houtte" .
 
 <https://bio.tools/er-cov> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0605,
         edam:topic_3324,
@@ -189109,7 +188113,7 @@ Discovering single-cell eQTLs from scRNA-seq data only.""" ;
     sc:url "https://github.com/soares-f/ER-CoV" .
 
 <https://bio.tools/erange> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_3169,
         edam:topic_3170 ;
@@ -189124,7 +188128,7 @@ Discovering single-cell eQTLs from scRNA-seq data only.""" ;
     biotools:primaryContact "Sean Upchurch" .
 
 <https://bio.tools/erbk> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0602,
@@ -189141,14 +188145,14 @@ Discovering single-cell eQTLs from scRNA-seq data only.""" ;
 
 <https://bio.tools/erccdashboard> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Gene expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ] ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_2058" ;
+            sc:name "Gene expression data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3508" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -189168,7 +188172,7 @@ Discovering single-cell eQTLs from scRNA-seq data only.""" ;
     biotools:primaryContact "Sarah Munro" .
 
 <https://bio.tools/erdf_analyser> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Plug-in" ;
     sc:applicationSubCategory edam:topic_0611,
@@ -189185,7 +188189,7 @@ Discovering single-cell eQTLs from scRNA-seq data only.""" ;
     biotools:primaryContact "Janaki Shanmugam" .
 
 <https://bio.tools/erds> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0199,
@@ -189202,7 +188206,7 @@ Discovering single-cell eQTLs from scRNA-seq data only.""" ;
         "Mingfu Zhu" .
 
 <https://bio.tools/erebus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btr129> ;
@@ -189217,7 +188221,7 @@ Discovering single-cell eQTLs from scRNA-seq data only.""" ;
     sc:url "http://troll.med.unc.edu/erebus/login.php" .
 
 <https://bio.tools/erga> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196 ;
     sc:description "Producing an improve assembly in presence of a sequence belonging to a closely related organism." ;
@@ -189231,7 +188235,7 @@ Discovering single-cell eQTLs from scRNA-seq data only.""" ;
     biotools:primaryContact "Support" .
 
 <https://bio.tools/ergene> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0203,
@@ -189247,7 +188251,7 @@ Discovering single-cell eQTLs from scRNA-seq data only.""" ;
     sc:url "https://github.com/Starlitnightly/ERgene" .
 
 <https://bio.tools/ergo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0085,
         edam:topic_0114,
@@ -189277,7 +188281,7 @@ Discovering single-cell eQTLs from scRNA-seq data only.""" ;
     biotools:primaryContact "Contact Form" .
 
 <https://bio.tools/ergo_structure> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2275 ;
     sc:citation <https://doi.org/10.1016/j.softx.2018.03.005> ;
@@ -189292,7 +188296,7 @@ Discovering single-cell eQTLs from scRNA-seq data only.""" ;
     sc:url "https://github.com/ElsevierSoftwareX/SOFTX-D-18-00001" .
 
 <https://bio.tools/erma> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3173 ;
     sc:description "Software and data to support epigenomic road map adventures." ;
@@ -189308,8 +188312,31 @@ Discovering single-cell eQTLs from scRNA-seq data only.""" ;
     sc:url "http://bioconductor.org/packages/release/bioc/html/erma.html" ;
     biotools:primaryContact "VJ Carey" .
 
+<https://bio.tools/ermer> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0204,
+        edam:topic_0602,
+        edam:topic_0749,
+        edam:topic_3172,
+        edam:topic_3407 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAC288>,
+        "pmcid:PMC9252789",
+        "pubmed:35489073" ;
+    sc:description "ERMer: A serverless platform for navigating, analyzing, and visualizing Escherichiacoli regulatory landscape through graph database." ;
+    sc:featureList edam:operation_0224,
+        edam:operation_0337,
+        edam:operation_1812 ;
+    sc:license "Apache-2.0" ;
+    sc:name "ERMer" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://ermer.biodesign.ac.cn/" .
+
 <https://bio.tools/erminej> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -189333,7 +188360,7 @@ Discovering single-cell eQTLs from scRNA-seq data only.""" ;
     biotools:primaryContact "ErmineJ support" .
 
 <https://bio.tools/erne> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3168,
@@ -189355,14 +188382,13 @@ Discovering single-cell eQTLs from scRNA-seq data only.""" ;
 
 <https://bio.tools/ernwin> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ] ;
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:name "Sequence features" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0883" ;
-            sc:name "Structure" ;
-            sc:sameAs "http://edamontology.org/data_0883" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0883" ;
+            sc:encodingFormat "http://edamontology.org/format_2033" ;
+            sc:name "Structure" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0097 ;
     sc:citation <https://doi.org/10.1261/rna.047522.114> ;
@@ -189377,7 +188403,7 @@ Discovering single-cell eQTLs from scRNA-seq data only.""" ;
     sc:url "https://github.com/pkerpedjiev/ernwin" .
 
 <https://bio.tools/erode> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3315 ;
@@ -189397,7 +188423,7 @@ Discovering single-cell eQTLs from scRNA-seq data only.""" ;
     biotools:primaryContact <https://orcid.org/0000-0002-6018-5989> .
 
 <https://bio.tools/erpin> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0099,
@@ -189414,7 +188440,7 @@ Discovering single-cell eQTLs from scRNA-seq data only.""" ;
     biotools:primaryContact "Daniel Gautheret" .
 
 <https://bio.tools/erpred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2640,
@@ -189436,7 +188462,7 @@ Discovering single-cell eQTLs from scRNA-seq data only.""" ;
     sc:url "http://codes.bio/erpred" .
 
 <https://bio.tools/error-related-performance-metrics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3474 ;
@@ -189451,7 +188477,7 @@ Discovering single-cell eQTLs from scRNA-seq data only.""" ;
     biotools:primaryContact "Skynet" .
 
 <https://bio.tools/error_correction_evaluation_toolkit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:citation "pubmed:22492192" ;
@@ -189463,7 +188489,7 @@ Discovering single-cell eQTLs from scRNA-seq data only.""" ;
     biotools:primaryContact "Xiao Yang" .
 
 <https://bio.tools/errorx> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0196,
@@ -189481,7 +188507,7 @@ Discovering single-cell eQTLs from scRNA-seq data only.""" ;
     sc:url "https://endeavorbio.com/downloads/" .
 
 <https://bio.tools/es-arcnn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3474,
@@ -189497,7 +188523,7 @@ Discovering single-cell eQTLs from scRNA-seq data only.""" ;
     sc:url "http://compgenomics.utsa.edu/ES-ARCNN/" .
 
 <https://bio.tools/es3> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0219,
         edam:topic_3379,
         edam:topic_3474 ;
@@ -189514,7 +188540,7 @@ Formerly known as trial2rev.""" ;
     sc:url "https://github.com/evidence-surveillance/trial2rev" .
 
 <https://bio.tools/esap_plus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0157,
         edam:topic_0160,
@@ -189533,7 +188559,7 @@ Formerly known as trial2rev.""" ;
     biotools:primaryContact "Contact form" .
 
 <https://bio.tools/esatac> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3169,
@@ -189553,7 +188579,7 @@ Formerly known as trial2rev.""" ;
         "Zheng Wei" .
 
 <https://bio.tools/esc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_2830,
@@ -189572,7 +188598,7 @@ Formerly known as trial2rev.""" ;
     biotools:primaryContact <https://orcid.org/0000-0001-7644-7181> .
 
 <https://bio.tools/escape_excel> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_3071 ;
@@ -189587,7 +188613,7 @@ Formerly known as trial2rev.""" ;
     biotools:primaryContact "Eric A. Welsh" .
 
 <https://bio.tools/escc-risk-assessment-tool> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_2269,
@@ -189605,14 +188631,14 @@ Formerly known as trial2rev.""" ;
 
 <https://bio.tools/escdb> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0842" ;
-            sc:name "Identifier" ;
-            sc:sameAs "http://edamontology.org/data_0842" ] ;
+            sc:additionalType "http://edamontology.org/data_0842" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Identifier" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0928" ;
-            sc:name "Gene expression profile" ;
-            sc:sameAs "http://edamontology.org/data_0928" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0928" ;
+            sc:encodingFormat "http://edamontology.org/format_2060" ;
+            sc:name "Gene expression profile" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_2229,
@@ -189636,7 +188662,7 @@ Formerly known as trial2rev.""" ;
     sc:url "http://biit.cs.ut.ee/escd" .
 
 <https://bio.tools/escher-trace> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0602,
@@ -189656,7 +188682,7 @@ Formerly known as trial2rev.""" ;
     sc:url "https://escher-trace.github.io/" .
 
 <https://bio.tools/esco> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2229,
@@ -189672,7 +188698,7 @@ Formerly known as trial2rev.""" ;
     sc:url "https://github.com/JINJINT/SplatterESCO" .
 
 <https://bio.tools/esefinder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3320,
@@ -189697,7 +188723,7 @@ Formerly known as trial2rev.""" ;
     biotools:primaryContact "Woody Lin" .
 
 <https://bio.tools/esetvis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0092 ;
@@ -189716,7 +188742,7 @@ Formerly known as trial2rev.""" ;
     biotools:primaryContact "Laure Cougnaud" .
 
 <https://bio.tools/eshadow> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3293,
@@ -189733,7 +188759,7 @@ Formerly known as trial2rev.""" ;
     biotools:primaryContact "Ivan Ovcharenko" .
 
 <https://bio.tools/esid> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_3071,
         edam:topic_3305,
@@ -189757,8 +188783,31 @@ In 2018, the ESID Registry WP renewed its call to support national registries an
     sc:name "ESID" ;
     sc:url "https://esid.org/Working-Parties/Registry-Working-Party/ESID-Registry" .
 
+<https://bio.tools/eside> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0610,
+        edam:topic_0637,
+        edam:topic_3314,
+        edam:topic_3382,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1371/JOURNAL.PONE.0255674>,
+        "pmcid:PMC8445633",
+        "pubmed:34529673" ;
+    sc:description "A computationally intelligent method to identify earthworm species (E. fetida) from digital images." ;
+    sc:featureList edam:operation_3443,
+        edam:operation_3460,
+        edam:operation_3937 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "ESIDE" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://eside.pythonanywhere.com" .
+
 <https://bio.tools/esignal> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078 ;
     sc:description "eSignal is a database of eMOTIFs and eMATRICES generated exclusively from signal transduction proteins. ESIGNAL can be used to discover signal transduction functions in new proteins." ;
@@ -189771,30 +188820,30 @@ In 2018, the ESID Registry WP renewed its call to support national registries an
 
 <https://bio.tools/esimsa> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ],
+            sc:additionalType "http://edamontology.org/data_0844" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Molecular mass" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ],
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Mass spectrometry data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0844" ;
-            sc:name "Molecular mass" ;
-            sc:sameAs "http://edamontology.org/data_0844" ] ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Mass spectrometry spectra" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ],
+            sc:additionalType "http://edamontology.org/data_0944" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Peptide mass fingerprint" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0944" ;
-            sc:name "Peptide mass fingerprint" ;
-            sc:sameAs "http://edamontology.org/data_0944" ],
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Mass spectrometry data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0844" ;
-            sc:name "Molecular mass" ;
-            sc:sameAs "http://edamontology.org/data_0844" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0844" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Molecular mass" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520,
@@ -189811,30 +188860,30 @@ In 2018, the ESID Registry WP renewed its call to support national registries an
 
 <https://bio.tools/esimsa2d> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ],
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Mass spectrometry data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0844" ;
-            sc:name "Molecular mass" ;
-            sc:sameAs "http://edamontology.org/data_0844" ],
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
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         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
+            sc:additionalType "http://edamontology.org/data_0844" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Molecular mass" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0944" ;
-            sc:name "Peptide mass fingerprint" ;
-            sc:sameAs "http://edamontology.org/data_0944" ],
+            sc:additionalType "http://edamontology.org/data_0944" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Peptide mass fingerprint" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ],
+            sc:additionalType "http://edamontology.org/data_0844" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Molecular mass" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0844" ;
-            sc:name "Molecular mass" ;
-            sc:sameAs "http://edamontology.org/data_0844" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Mass spectrometry data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520,
@@ -189850,14 +188899,14 @@ In 2018, the ESID Registry WP renewed its call to support national registries an
 
 <https://bio.tools/esiprot> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0944" ;
-            sc:name "Peptide mass fingerprint" ;
-            sc:sameAs "http://edamontology.org/data_0944" ] ;
+            sc:additionalType "http://edamontology.org/data_0944" ;
+            sc:encodingFormat "http://edamontology.org/format_3245" ;
+            sc:name "Peptide mass fingerprint" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0944" ;
-            sc:name "Peptide mass fingerprint" ;
-            sc:sameAs "http://edamontology.org/data_0944" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0944" ;
+            sc:encodingFormat "http://edamontology.org/format_3245" ;
+            sc:name "Peptide mass fingerprint" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -189876,7 +188925,7 @@ In 2018, the ESID Registry WP renewed its call to support national registries an
     sc:url "http://www.bioprocess.org/esiprot" .
 
 <https://bio.tools/eskip-finder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3320,
@@ -189896,7 +188945,7 @@ In 2018, the ESID Registry WP renewed its call to support national registries an
     sc:url "https://eskip-finder.org" .
 
 <https://bio.tools/eslpred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0123,
@@ -189914,11 +188963,49 @@ In 2018, the ESID Registry WP renewed its call to support national registries an
         "Mac",
         "Windows" ;
     sc:softwareHelp <http://crdd.osdd.net/raghava/eslpred/help.html> ;
-    sc:url "http://www.imtech.res.in/raghava/eslpred/" ;
+    sc:url "https://webs.iiitd.edu.in/raghava/eslpred/" ;
     biotools:primaryContact "G.P.S. Raghava" .
 
+<https://bio.tools/eslpred2> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:citation <https://doi.org/10.1186/1471-2105-9-503>,
+        "pmcid:PMC2612013",
+        "pubmed:19038062" ;
+    sc:description "\"ESLpred2\" is an improved version of our previous most popular method, ESLpred, which can predict four major localizations (cytoplasmic, mitochondrial, nuclear and extracellular) with an accuracy of 88%." ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "eslpred2" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/eslpred2/index.html> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/eslpred2/index.html" .
+
+<https://bio.tools/eso> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Desktop application" ;
+    sc:applicationSubCategory edam:topic_0160,
+        edam:topic_0199,
+        edam:topic_0203,
+        edam:topic_3295,
+        edam:topic_3895 ;
+    sc:citation <https://doi.org/10.1021/ACSSYNBIO.1C00426>,
+        "pubmed:34928133" ;
+    sc:description "A Novel Approach to Identify and Avoid Mutational Hotspots in DNA Sequences While Maintaining High Expression Levels." ;
+    sc:featureList edam:operation_0284,
+        edam:operation_0554,
+        edam:operation_3227 ;
+    sc:isAccessibleForFree true ;
+    sc:name "ESO" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://www.cs.tau.ac.il/~tamirtul/ESO/ESO_User_Guide.pdf> ;
+    sc:url "https://www.cs.tau.ac.il/~tamirtul/ESO/" .
+
 <https://bio.tools/esp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
@@ -189942,7 +189029,7 @@ In 2018, the ESID Registry WP renewed its call to support national registries an
     sc:url "http://evs.gs.washington.edu/EVS/" .
 
 <https://bio.tools/esp_dnn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0166,
         edam:topic_0209,
         edam:topic_3474 ;
@@ -189956,8 +189043,30 @@ In 2018, the ESID Registry WP renewed its call to support national registries an
     sc:name "ESP DNN" ;
     sc:url "https://github.com/AstexUK/ESP_DNN" .
 
+<https://bio.tools/espc> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0130,
+        edam:topic_0593,
+        edam:topic_0602,
+        edam:topic_3306,
+        edam:topic_3365 ;
+    sc:citation <https://doi.org/10.1107/S2059798321008998>,
+        "pmcid:PMC8489228",
+        "pubmed:34605428" ;
+    sc:description "An online data-analysis platform for molecular biophysics." ;
+    sc:featureList edam:operation_0455,
+        edam:operation_0482,
+        edam:operation_3799 ;
+    sc:isAccessibleForFree true ;
+    sc:name "eSPC" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://spc.embl-hamburg.de/" .
+
 <https://bio.tools/espres> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0610,
@@ -189974,14 +189083,14 @@ In 2018, the ESID Registry WP renewed its call to support national registries an
 
 <https://bio.tools/esprit-forest> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ] ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Nucleic acid sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0872" ;
-            sc:name "Phylogenetic tree" ;
-            sc:sameAs "http://edamontology.org/data_0872" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0872" ;
+            sc:encodingFormat "http://edamontology.org/format_2006" ;
+            sc:name "Phylogenetic tree" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3168,
@@ -189998,7 +189107,7 @@ In 2018, the ESID Registry WP renewed its call to support national registries an
     biotools:primaryContact "Yijun Sun" .
 
 <https://bio.tools/espritz> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0081 ;
@@ -190016,7 +189125,7 @@ In 2018, the ESID Registry WP renewed its call to support national registries an
     biotools:primaryContact "Silvio C.E. Tosatto" .
 
 <https://bio.tools/esshi-c> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3168,
@@ -190035,7 +189144,7 @@ Here we introduce essHi-C, a method to isolate the specific, or essential compon
     sc:url "https://github.com/stefanofranzini/essHIC" .
 
 <https://bio.tools/est2assembly> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3168,
@@ -190054,18 +189163,15 @@ Here we introduce essHi-C, a method to isolate the specific, or essential compon
 
 <https://bio.tools/est2genome> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2887" ;
-            sc:name "Nucleic acid sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2887" ],
+            sc:additionalType "http://edamontology.org/data_2887" ;
+            sc:name "Nucleic acid sequence record" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2887" ;
-            sc:name "Nucleic acid sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2887" ] ;
+            sc:additionalType "http://edamontology.org/data_2887" ;
+            sc:name "Nucleic acid sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1276" ;
-            sc:name "Nucleic acid features" ;
-            sc:sameAs "http://edamontology.org/data_1276" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1276" ;
+            sc:name "Nucleic acid features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0097 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -190095,7 +189201,7 @@ Here we introduce essHi-C, a method to isolate the specific, or essential compon
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/est2genome.html" .
 
 <https://bio.tools/est2genome_ws_husar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/13.4.477> ;
@@ -190110,7 +189216,7 @@ Here we introduce essHi-C, a method to isolate the specific, or essential compon
     sc:url "http://genius.embnet.dkfz-heidelberg.de/menu/hobit/embdoc/est2genome.html" .
 
 <https://bio.tools/estexplorer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0196,
@@ -190127,7 +189233,7 @@ Here we introduce essHi-C, a method to isolate the specific, or essential compon
     sc:url "http://estexplorer.biolinfo.org" .
 
 <https://bio.tools/estimage> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_2640,
@@ -190149,7 +189255,7 @@ Here we introduce essHi-C, a method to isolate the specific, or essential compon
         <https://orcid.org/0000-0002-4889-1047> .
 
 <https://bio.tools/estimate-ldl-cholesterol> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3301 ;
     sc:citation "pubmed:18426324",
@@ -190165,7 +189271,7 @@ Here we introduce essHi-C, a method to isolate the specific, or essential compon
     biotools:primaryContact "Igor Podlubny" .
 
 <https://bio.tools/estimating-smooth-precision-recall-curve> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3071 ;
@@ -190181,7 +189287,7 @@ Here we introduce essHi-C, a method to isolate the specific, or essential compon
     biotools:primaryContact "Kay H. Brodersen" .
 
 <https://bio.tools/estipop> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_2269,
@@ -190198,7 +189304,7 @@ Here we introduce essHi-C, a method to isolate the specific, or essential compon
     sc:url "https://github.com/michorlab/estipop" .
 
 <https://bio.tools/estprep> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3512 ;
@@ -190212,22 +189318,20 @@ Here we introduce essHi-C, a method to isolate the specific, or essential compon
 
 <https://bio.tools/ests_source> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2704" ;
-            sc:name "Clone ID (IMAGE)" ;
-            sc:sameAs "http://edamontology.org/data_2704" ],
+            sc:additionalType "http://edamontology.org/data_2292" ;
+            sc:name "GenBank accession" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2292" ;
-            sc:name "GenBank accession" ;
-            sc:sameAs "http://edamontology.org/data_2292" ] ;
+            sc:additionalType "http://edamontology.org/data_2704" ;
+            sc:name "Clone ID (IMAGE)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3134" ;
-            sc:name "Gene transcript report" ;
-            sc:sameAs "http://edamontology.org/data_3134" ],
+            sc:additionalType "http://edamontology.org/data_3134" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Gene transcript report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3134" ;
-            sc:name "Gene transcript report" ;
-            sc:sameAs "http://edamontology.org/data_3134" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3134" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Gene transcript report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_3512 ;
     sc:citation <https://doi.org/10.1093/nar/gkg014> ;
@@ -190239,7 +189343,7 @@ Here we introduce essHi-C, a method to isolate the specific, or essential compon
     sc:url "http://genome-www5.stanford.edu/cgi-bin/SMD/source/sourceSearch" .
 
 <https://bio.tools/estscan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3308 ;
@@ -190253,8 +189357,28 @@ Here we introduce essHi-C, a method to isolate the specific, or essential compon
     sc:url "http://myhits.isb-sib.ch/cgi-bin/estscan" ;
     biotools:primaryContact "ESTScan Support" .
 
+<https://bio.tools/et-net> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_3452,
+        edam:topic_3474,
+        edam:topic_3519 ;
+    sc:citation <https://doi.org/10.1007/S11042-021-11319-8>,
+        "pmcid:PMC8405348",
+        "pubmed:34483709" ;
+    sc:description "An Ensemble Transfer Learning Network for COVID-19 detection from lung CT-scan images." ;
+    sc:featureList edam:operation_3436,
+        edam:operation_3935 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "ET-NET" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/Rohit-Kundu/ET-NET_Covid-Detection" .
+
 <https://bio.tools/et-score> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2275,
@@ -190272,7 +189396,7 @@ Here we introduce essHi-C, a method to isolate the specific, or essential compon
     biotools:primaryContact <https://orcid.org/0000-0003-2385-831X> .
 
 <https://bio.tools/et_report_maker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -190293,10 +189417,9 @@ Here we introduce essHi-C, a method to isolate the specific, or essential compon
 
 <https://bio.tools/etandem> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2887" ;
-            sc:name "Nucleic acid sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2887" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2887" ;
+            sc:name "Nucleic acid sequence record" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0157 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -190326,7 +189449,7 @@ Here we introduce essHi-C, a method to isolate the specific, or essential compon
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/etandem.html" .
 
 <https://bio.tools/etblast> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0218,
         edam:topic_3068 ;
@@ -190341,7 +189464,7 @@ Here we introduce essHi-C, a method to isolate the specific, or essential compon
     sc:url "http://etest.vbi.vt.edu/etblast3/" .
 
 <https://bio.tools/etcal> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3417 ;
     sc:citation <https://doi.org/10.1016/j.softx.2017.12.005> ;
@@ -190358,7 +189481,7 @@ Here we introduce essHi-C, a method to isolate the specific, or essential compon
     biotools:primaryContact "Pawel Kasprowski" .
 
 <https://bio.tools/etching> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3175,
         edam:topic_3360,
@@ -190377,7 +189500,7 @@ Here we introduce essHi-C, a method to isolate the specific, or essential compon
     sc:url "http://big.hanyang.ac.kr/ETCHING" .
 
 <https://bio.tools/ethoflow> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3382,
         edam:topic_3474,
@@ -190388,7 +189511,7 @@ Here we introduce essHi-C, a method to isolate the specific, or essential compon
     sc:url "https://github.com/bernardesrodrigoc/Ethoflow" .
 
 <https://bio.tools/etholoop> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_3304,
         edam:topic_3500,
@@ -190401,8 +189524,26 @@ Here we introduce essHi-C, a method to isolate the specific, or essential compon
     sc:name "EthoLoop" ;
     sc:url "http://www.etholoop.org/" .
 
+<https://bio.tools/etna> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Desktop application" ;
+    sc:applicationSubCategory edam:topic_0128,
+        edam:topic_0154,
+        edam:topic_2640,
+        edam:topic_3957 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC440>,
+        "pubmed:35771625" ;
+    sc:description "Extensive Tool for Network Analysis (ETNA) is an user-firendly graphical interface for the network analysis that contains classical measures and simulation-based ones." ;
+    sc:featureList edam:operation_2492,
+        edam:operation_3927,
+        edam:operation_3928 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "ETNA" ;
+    sc:url "https://githubtocolab.com/AlicjaNowakowska/ETNA/blob/main/ETNAColab.ipynb" .
+
 <https://bio.tools/etox_allies> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2258,
         edam:topic_3306,
@@ -190420,7 +189561,7 @@ Here we introduce essHi-C, a method to isolate the specific, or essential compon
     biotools:primaryContact "Daan P. Geerke" .
 
 <https://bio.tools/etph> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0625,
@@ -190437,7 +189578,7 @@ Here we introduce essHi-C, a method to isolate the specific, or essential compon
     sc:url "http://klab.sjtu.edu.cn/enhancer/" .
 
 <https://bio.tools/etumormetastasis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Script" ;
     sc:applicationSubCategory edam:topic_0199,
@@ -190453,7 +189594,7 @@ Here we introduce essHi-C, a method to isolate the specific, or essential compon
     sc:url "https://github.com/WangEdwinLab/eTumorMetastasis" .
 
 <https://bio.tools/euadb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0632,
@@ -190468,7 +189609,7 @@ Here we introduce essHi-C, a method to isolate the specific, or essential compon
     sc:url "http://EUAdb.org" .
 
 <https://bio.tools/eudysbiome> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3301 ;
@@ -190490,14 +189631,13 @@ Here we introduce essHi-C, a method to isolate the specific, or essential compon
 
 <https://bio.tools/eugene> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ] ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Nucleic acid sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:name "Annotation track" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.2174/157489308784340702> ;
@@ -190514,7 +189654,7 @@ Here we introduce essHi-C, a method to isolate the specific, or essential compon
     biotools:primaryContact "Yves Van de Peer" .
 
 <https://bio.tools/eugene_hom> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0621,
@@ -190533,7 +189673,7 @@ Here we introduce essHi-C, a method to isolate the specific, or essential compon
     biotools:primaryContact "Sylvain Foissac" .
 
 <https://bio.tools/eugenes> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0621,
@@ -190555,14 +189695,13 @@ Here we introduce essHi-C, a method to isolate the specific, or essential compon
 
 <https://bio.tools/euhcvdb> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1097" ;
-            sc:name "Sequence accession (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1097" ] ;
+            sc:additionalType "http://edamontology.org/data_1097" ;
+            sc:name "Sequence accession (nucleic acid)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Sequence record" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0781 ;
     sc:citation <https://doi.org/10.1093/nar/gkl970> ;
@@ -190575,8 +189714,32 @@ Here we introduce essHi-C, a method to isolate the specific, or essential compon
     sc:softwareHelp <https://euhcvdb.ibcp.fr/euHCVdb/jsp/help.jsp> ;
     sc:url "http://euhcvdb.ibcp.fr/euHCVdb/" .
 
+<https://bio.tools/eukaryotic_linear_motif> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0128,
+        edam:topic_0154,
+        edam:topic_0160,
+        edam:topic_0621,
+        edam:topic_3324 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAB975>,
+        "pmcid:PMC8728146",
+        "pubmed:34718738" ;
+    sc:description "This computational biology resource mainly focuses on annotation and detection of eukaryotic linear motifs (ELMs) by providing both a repository of annotated motif data and an exploratory tool for motif prediction." ;
+    sc:featureList edam:operation_0224,
+        edam:operation_0238,
+        edam:operation_0239,
+        edam:operation_0245 ;
+    sc:isAccessibleForFree true ;
+    sc:name "Eukaryotic Linear Motif" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <http://elm.eu.org/api/manual.html> ;
+    sc:url "http://elm.eu.org" .
+
 <https://bio.tools/eukmetasanity> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0637,
@@ -190597,7 +189760,7 @@ Here we introduce essHi-C, a method to isolate the specific, or essential compon
     sc:url "https://github.com/cjneely10/EukMetaSanity" .
 
 <https://bio.tools/eupathdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_3500,
@@ -190619,14 +189782,14 @@ Here we introduce essHi-C, a method to isolate the specific, or essential compon
 
 <https://bio.tools/eurisco> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0968" ;
-            sc:name "Keyword" ;
-            sc:sameAs "http://edamontology.org/data_0968" ] ;
+            sc:additionalType "http://edamontology.org/data_0968" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Keyword" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2080" ;
-            sc:name "Database search results" ;
-            sc:sameAs "http://edamontology.org/data_2080" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2080" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Database search results" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0219 ;
     sc:author "Stephan Weise" ;
@@ -190646,7 +189809,7 @@ Here we introduce essHi-C, a method to isolate the specific, or essential compon
     biotools:primaryContact <http://orcid.org/0000-0003-4031-9131> .
 
 <https://bio.tools/eurocarbdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0152,
         edam:topic_0593,
@@ -190668,7 +189831,7 @@ Here we introduce essHi-C, a method to isolate the specific, or essential compon
     biotools:primaryContact "Stuart M. Haslam" .
 
 <https://bio.tools/europe_pmc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_3068 ;
     sc:description "Archive of life sciences journal literature." ;
@@ -190683,10 +189846,10 @@ Here we introduce essHi-C, a method to isolate the specific, or essential compon
 
 <https://bio.tools/europe_pmc_orcid_tool> a sc:SoftwareApplication ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3505" ;
-            sc:name "Bibliography" ;
-            sc:sameAs "http://edamontology.org/data_3505" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3505" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Bibliography" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3068 ;
     sc:author "Literature Services" ;
@@ -190706,10 +189869,10 @@ Here we introduce essHi-C, a method to isolate the specific, or essential compon
 
 <https://bio.tools/europe_pmc_plus_grant_linking> a sc:SoftwareApplication ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3505" ;
-            sc:name "Bibliography" ;
-            sc:sameAs "http://edamontology.org/data_3505" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3505" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Bibliography" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3068 ;
     sc:citation <https://doi.org/10.1093/nar/gku1061> ;
@@ -190730,10 +189893,10 @@ Here we introduce essHi-C, a method to isolate the specific, or essential compon
 
 <https://bio.tools/europe_pmc_plus_manuscript_submission_system> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0971" ;
-            sc:name "Article" ;
-            sc:sameAs "http://edamontology.org/data_0971" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0971" ;
+            sc:encodingFormat "http://edamontology.org/format_3506" ;
+            sc:name "Article" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3068,
         edam:topic_3071 ;
@@ -190753,7 +189916,7 @@ Here we introduce essHi-C, a method to isolate the specific, or essential compon
     biotools:primaryContact "Jo McEntyre" .
 
 <https://bio.tools/europe_pmc_restful_web_service_for_articles> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API" ;
     sc:applicationSubCategory edam:topic_3068,
         edam:topic_3473 ;
@@ -190769,7 +189932,7 @@ Here we introduce essHi-C, a method to isolate the specific, or essential compon
     sc:url "http://europepmc.org/RestfulWebService" .
 
 <https://bio.tools/european_mouse_mutant_archive_emma> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description """INFRAFRONTIER is the European Research Infrastructure for phenotyping and archiving of model mammalian genomes. The core services of INFRAFRONTIER comprise the systemic phenotyping of mouse mutants in the participating mouse clinics, and the archiving and distribution of mouse mutant lines by the European Mouse Mutant Archive (EMMA). 
 EMMA is a non-profit repository for the collection, archiving (via cryopreservation) and distribution of relevant mutant mouse strains essential for basic biomedical research. The laboratory mouse is the most important mammalian model for studying genetic and multi-factorial diseases in man. The comprehensive physical and data resources of EMMA support basic biomedical and preclinical research, and the available research tools and mouse models of human disease offer the opportunity to develop a better understanding of molecular disease mechanisms and may provide the foundation for the development of diagnostic, prognostic and therapeutic strategies.""" ;
     sc:featureList edam:operation_3431 ;
@@ -190777,7 +189940,7 @@ EMMA is a non-profit repository for the collection, archiving (via cryopreservat
     sc:url "https://www.infrafrontier.eu" .
 
 <https://bio.tools/europepmc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0218,
         edam:topic_3068 ;
@@ -190793,7 +189956,7 @@ EMMA is a non-profit repository for the collection, archiving (via cryopreservat
     sc:url "https://europepmc.org" .
 
 <https://bio.tools/europhenome> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0625,
@@ -190815,14 +189978,14 @@ EMMA is a non-profit repository for the collection, archiving (via cryopreservat
 
 <https://bio.tools/eva> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ] ;
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence variations" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0622,
@@ -190847,7 +190010,7 @@ EMMA is a non-profit repository for the collection, archiving (via cryopreservat
     biotools:primaryContact "Help desk" .
 
 <https://bio.tools/eva_inbred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3056 ;
     sc:citation <https://doi.org/10.1016/j.livsci.2008.01.027> ;
@@ -190863,7 +190026,7 @@ EMMA is a non-profit repository for the collection, archiving (via cryopreservat
     sc:url "https://www.nordgen.org/en/farm-animals/resources/ocs/" .
 
 <https://bio.tools/eva_metabolic> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3172,
         edam:topic_3407,
@@ -190882,7 +190045,7 @@ EMMA is a non-profit repository for the collection, archiving (via cryopreservat
     sc:url "https://www.microsoft.com/en-us/p/eva-metabolomics/9p9l8mdr08v2#activetab=pivot:overviewtab" .
 
 <https://bio.tools/evacon> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154 ;
     sc:citation "pubmed:15980486" ;
@@ -190898,7 +190061,7 @@ EMMA is a non-profit repository for the collection, archiving (via cryopreservat
     biotools:primaryContact "Support" .
 
 <https://bio.tools/evag> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0781 ;
     sc:citation <https://doi.org/10.1016/j.antiviral.2012.05.005>,
@@ -190914,7 +190077,7 @@ EMMA is a non-profit repository for the collection, archiving (via cryopreservat
     sc:url "http://www.european-virus-archive.com/" .
 
 <https://bio.tools/eval> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_2269,
@@ -190930,8 +190093,37 @@ EMMA is a non-profit repository for the collection, archiving (via cryopreservat
     sc:url "https://mblab.wustl.edu/software.html" ;
     biotools:primaryContact "Michael R Brent" .
 
+<https://bio.tools/evaldna> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Nucleic acid sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0196,
+        edam:topic_0621,
+        edam:topic_3175,
+        edam:topic_3474,
+        edam:topic_3500 ;
+    sc:citation <https://doi.org/10.1186/S12859-021-04480-2>,
+        "pmcid:PMC8627028",
+        "pubmed:34837948" ;
+    sc:description "A machine learning-based tool for the comprehensive evaluation of mammalian genome assembly quality." ;
+    sc:featureList edam:operation_0523,
+        edam:operation_0524,
+        edam:operation_0525,
+        edam:operation_3180,
+        edam:operation_3216 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "EvalDNA" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/bioinfoMMS/EvalDNA" .
+
 <https://bio.tools/evatlas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_3047,
@@ -190951,21 +190143,29 @@ EMMA is a non-profit repository for the collection, archiving (via cryopreservat
         "Windows" ;
     sc:url "http://bioinfo.life.hust.edu.cn/EVAtlas" .
 
-<https://bio.tools/event_extraction> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0218,
-        edam:topic_0602,
-        edam:topic_3344 ;
-    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTZ607>,
-        "pubmed:31392318" ;
-    sc:description "> VERY_LOW CONFIDENCE! | > CORRECT NAME OF TOOL COULD ALSO BE 'BioNLPST-BB', 'desiderated', 'BioNLPST-BGI', 'MOTIVATION:Biomedical' | Context awareness and embedding for biomedical event extraction | EvntExtrc is a biological event extractor on biomedical literature | The following instructions will help you get a copy of the source code as well as the datasets, and run the programs on your own machine" ;
-    sc:featureList edam:operation_3280,
-        edam:operation_3798 ;
-    sc:license "Apache-2.0" ;
-    sc:name "event extraction" ;
-    sc:url "https://github.com/cskyan/evntextrc" .
+<https://bio.tools/evatool> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_0203,
+        edam:topic_0659,
+        edam:topic_3170,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.1093/BIB/BBAC310>,
+        "pubmed:35901462" ;
+    sc:description "An optimized reads assignment tool for small ncRNA quantification and its application in extracellular vesicle datasets." ;
+    sc:featureList edam:operation_3198,
+        edam:operation_3799 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "EVAtool" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://bioinfo.life.hust.edu.cn/EVAtool" .
 
 <https://bio.tools/eventpointer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3168,
@@ -190987,14 +190187,12 @@ EMMA is a non-profit repository for the collection, archiving (via cryopreservat
 
 <https://bio.tools/evex> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0842" ;
-            sc:name "Identifier" ;
-            sc:sameAs "http://edamontology.org/data_0842" ] ;
+            sc:additionalType "http://edamontology.org/data_0842" ;
+            sc:name "Identifier" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0972" ;
-            sc:name "Text mining report" ;
-            sc:sameAs "http://edamontology.org/data_0972" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0972" ;
+            sc:name "Text mining report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3473 ;
     sc:citation <https://doi.org/10.1371/journal.pone.0055814> ;
@@ -191012,7 +190210,7 @@ EMMA is a non-profit repository for the collection, archiving (via cryopreservat
     biotools:primaryContact "Yves Van de Peer" .
 
 <https://bio.tools/evican> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3382,
@@ -191030,8 +190228,28 @@ EMMA is a non-profit repository for the collection, archiving (via cryopreservat
     sc:name "EVICAN" ;
     sc:url "https://github.com/MischaSchwendy/EVICAN-MRCNN" .
 
+<https://bio.tools/evicor> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0602,
+        edam:topic_0625,
+        edam:topic_2640,
+        edam:topic_3336 ;
+    sc:citation <https://doi.org/10.1016/J.JMB.2022.167528>,
+        "pubmed:35662462" ;
+    sc:description "Interactive Web Platform for Exploration of Molecular Features and Response to Anti-cancer Drugs." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_2422,
+        edam:operation_3501 ;
+    sc:license "Other" ;
+    sc:name "EviCor" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://www.evicor.org/" .
+
 <https://bio.tools/evidence_finder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0218,
         edam:topic_3068,
@@ -191052,7 +190270,7 @@ EMMA is a non-profit repository for the collection, archiving (via cryopreservat
     sc:url "http://www.nactem.ac.uk/UKPMCWS/EvidenceFinder.html" .
 
 <https://bio.tools/eview> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0634 ;
     sc:citation <https://doi.org/10.1016/J.CMPB.2020.105682>,
@@ -191063,7 +190281,7 @@ EMMA is a non-profit repository for the collection, archiving (via cryopreservat
     sc:url "https://eview.upf.edu" .
 
 <https://bio.tools/evinet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602 ;
     sc:citation <https://doi.org/10.1093/nar/gky485> ;
@@ -191078,8 +190296,26 @@ EMMA is a non-profit repository for the collection, archiving (via cryopreservat
     sc:softwareVersion "1.0" ;
     sc:url "https://www.evinet.org" .
 
+<https://bio.tools/evitar> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Workflow" ;
+    sc:applicationSubCategory edam:topic_0659,
+        edam:topic_3170,
+        edam:topic_3308 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC144>,
+        "pmcid:PMC9048652",
+        "pubmed:35294970" ;
+    sc:description "Evitar (Emerging-Virus-Targeting RNA) is a program for (1) pre-designing siRNAs/Cas13a guide RNAs against future viruses based on existing viral sequences, and (2) designing siRNAs/Cas13a guide RNAs against a single virus based on sequences of multiple strains of this virus." ;
+    sc:featureList edam:operation_0465,
+        edam:operation_2008,
+        edam:operation_3431 ;
+    sc:name "Evitar" ;
+    sc:operatingSystem "Linux" ;
+    sc:url "https://github.com/dingyaozhang/Evitar" .
+
 <https://bio.tools/evitta> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0621,
@@ -191098,7 +190334,7 @@ EMMA is a non-profit repository for the collection, archiving (via cryopreservat
     sc:url "https://tau.cmmt.ubc.ca/eVITTA/" .
 
 <https://bio.tools/evlncrnas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Bioinformatics portal" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0203,
@@ -191120,10 +190356,10 @@ EMMA is a non-profit repository for the collection, archiving (via cryopreservat
 
 <https://bio.tools/evmutation> a sc:SoftwareApplication ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Database portal" ;
     sc:applicationSubCategory edam:topic_1775,
@@ -191139,7 +190375,7 @@ EMMA is a non-profit repository for the collection, archiving (via cryopreservat
     biotools:primaryContact "Debbie Marks" .
 
 <https://bio.tools/evntextrc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0218,
@@ -191156,7 +190392,7 @@ Context awareness and embedding for biomedical event extraction""" ;
     sc:url "https://github.com/cskyan/evntextrc" .
 
 <https://bio.tools/evoactg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0621,
@@ -191179,7 +190415,7 @@ EvoACTG is a web-repository of chamber-specific cardiac transcriptome data for 7
     sc:url "http://evoactg.uni-muenster.de/" .
 
 <https://bio.tools/evocor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0160,
@@ -191204,7 +190440,7 @@ EvoACTG is a web-repository of chamber-specific cardiac transcriptome data for 7
     biotools:primaryContact "EvoCor Support" .
 
 <https://bio.tools/evodesign> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -191226,7 +190462,7 @@ EvoACTG is a web-repository of chamber-specific cardiac transcriptome data for 7
     biotools:primaryContact "Yang Zhang Lab" .
 
 <https://bio.tools/evoker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3053,
@@ -191244,7 +190480,7 @@ EvoACTG is a web-repository of chamber-specific cardiac transcriptome data for 7
     sc:url "http://www.sanger.ac.uk/science/tools/evoker" .
 
 <https://bio.tools/evol2circos> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0084,
@@ -191260,8 +190496,48 @@ EvoACTG is a web-repository of chamber-specific cardiac transcriptome data for 7
     sc:name "Evol2Circos" ;
     sc:url "https://mail.nbfgr.res.in/evole2circos/index.html" .
 
+<https://bio.tools/evolaps> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_0872" ;
+            sc:encodingFormat "http://edamontology.org/format_1912" ;
+            sc:name "Phylogenetic tree" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0084,
+        edam:topic_0102,
+        edam:topic_0196 ;
+    sc:citation <https://doi.org/10.1186/S12859-021-04386-Z>,
+        "pmcid:PMC8474961",
+        "pubmed:34579644" ;
+    sc:description "A web interface to visualize continuous phylogeographic reconstructions." ;
+    sc:featureList edam:operation_0326,
+        edam:operation_0337,
+        edam:operation_3432,
+        edam:operation_3478,
+        edam:operation_3745 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "EvoLaps" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://www.evolaps.org" .
+
+<https://bio.tools/evolfdb> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:description "A Comprehensive resource on Olfactory receptors" ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "evolfdb" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/evolfdb/index.html> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/evolfdb/index.html" .
+
 <https://bio.tools/evolqg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3055,
         edam:topic_3056,
@@ -191283,7 +190559,7 @@ EvoACTG is a web-repository of chamber-specific cardiac transcriptome data for 7
     biotools:primaryContact "Diogo Melo" .
 
 <https://bio.tools/evolstm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0780,
@@ -191301,7 +190577,7 @@ EvoACTG is a web-repository of chamber-specific cardiac transcriptome data for 7
     sc:url "https://github.com/DongjoonLim/EvoLSTM" .
 
 <https://bio.tools/evolview> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0621,
@@ -191326,7 +190602,7 @@ EvoACTG is a web-repository of chamber-specific cardiac transcriptome data for 7
     biotools:primaryContact "Evolview Team" .
 
 <https://bio.tools/evoprinter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0654,
@@ -191345,16 +190621,36 @@ EvoACTG is a web-repository of chamber-specific cardiac transcriptome data for 7
     biotools:primaryContact "Thomas Brody",
         "Ward F. Odenwald" .
 
+<https://bio.tools/evorator> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_2814,
+        edam:topic_3293,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1016/J.JMB.2022.167538>,
+        "pubmed:35662466" ;
+    sc:description "EvoRator employs machine-learning for prediction of residue-level evolutionary rates from protein structure. This prediction is based on various features comprising the structural information characterizing the protein." ;
+    sc:featureList edam:operation_0474,
+        edam:operation_0570,
+        edam:operation_3659 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "EvoRator" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://evorator.tau.ac.il/overview.html> ;
+    sc:url "https://evorator.tau.ac.il/" .
+
 <https://bio.tools/evorha> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3494" ;
-            sc:name "DNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3494" ] ;
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "DNA sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3494" ;
-            sc:name "DNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3494" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:name "DNA sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199 ;
     sc:citation <https://doi.org/10.1093/nar/gkv478> ;
@@ -191368,8 +190664,54 @@ EvoACTG is a web-repository of chamber-specific cardiac transcriptome data for 7
     sc:softwareVersion "1" ;
     sc:url "http://bioinformatics.intec.ugent.be/kmarchal/EVORhA/" .
 
+<https://bio.tools/ewas_catalog> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Library",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0625,
+        edam:topic_3071,
+        edam:topic_3295 ;
+    sc:citation <https://doi.org/10.12688/WELLCOMEOPENRES.17598.2>,
+        "pmcid:PMC9096146",
+        "pubmed:35592546" ;
+    sc:description "A database of epigenome-wide association studies." ;
+    sc:featureList edam:operation_0224,
+        edam:operation_3435,
+        edam:operation_3659 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "EWAS Catalog" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://www.ewascatalog.org" .
+
+<https://bio.tools/ewas_open_platform> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0625,
+        edam:topic_0749,
+        edam:topic_3295,
+        edam:topic_3517,
+        edam:topic_3518 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAB972>,
+        "pmcid:PMC8728289",
+        "pubmed:34718752" ;
+    sc:description "EWAS Open Platform is a comprehensive analysis suite that integrates EWAS Atlas, EWAS Data Hub and EWAS Toolkit for epigenome-wide association studies." ;
+    sc:featureList edam:operation_3207,
+        edam:operation_3501,
+        edam:operation_3925 ;
+    sc:isAccessibleForFree true ;
+    sc:name "EWAS" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://ngdc.cncb.ac.cn/ewas" .
+
 <https://bio.tools/ewasex> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_0654,
@@ -191383,13 +190725,13 @@ EvoACTG is a web-repository of chamber-specific cardiac transcriptome data for 7
     sc:url "https://github.com/Silver-Hawk/EWASex" .
 
 <https://bio.tools/ewastools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "This tool contains Infinium Human Methylation BeadChip pipeline that can be installed and used inside the Galaxy. The pipeline steps include: raw intensity data loading .idat preprocessing, optional normalisation of the data, quality control with additional sample check. It gives the user the opportunity to perform any of these preparation and data cleaning steps, including the next highly recommended genetic variation annotation step resulting in single nucleotide polymorphism identification and removal by simply running the tool. Finally, the dataset generated through all of these steps can be used to hunt find differentially-methylated positions DMP and regions DMR with respect to a phenotype co-variate." ;
     sc:name "ewastools" ;
     sc:url "https://github.com/kpbioteam/ewas_galaxy" .
 
 <https://bio.tools/ewce> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_1775 ;
@@ -191404,7 +190746,7 @@ EvoACTG is a web-repository of chamber-specific cardiac transcriptome data for 7
     biotools:primaryContact "Nathan Skene" .
 
 <https://bio.tools/ewe> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0610 ;
     sc:citation <https://doi.org/10.1016/j.softx.2018.06.004> ;
@@ -191418,7 +190760,7 @@ EvoACTG is a web-repository of chamber-specific cardiac transcriptome data for 7
     sc:url "http://ecopath.org/" .
 
 <https://bio.tools/exabayes> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_3293 ;
     sc:description "ExaBayes is a software package for Bayesian phylogenetic tree inference. It is particularly suitable for large-scale analyses on computer clusters." ;
@@ -191432,7 +190774,7 @@ EvoACTG is a web-repository of chamber-specific cardiac transcriptome data for 7
     sc:url "https://github.com/aberer/exabayes" .
 
 <https://bio.tools/exac> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
@@ -191459,7 +190801,7 @@ EvoACTG is a web-repository of chamber-specific cardiac transcriptome data for 7
         "Web error forum" .
 
 <https://bio.tools/exact> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0219,
@@ -191479,8 +190821,23 @@ Rest API sync with the EXACT Server https://github.com/ChristianMarzahl/Exact.""
     sc:name "EXACT" ;
     sc:url "https://exact.cs.fau.de/" .
 
+<https://bio.tools/exaid> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application",
+        "Workbench" ;
+    sc:applicationSubCategory edam:topic_0769,
+        edam:topic_3384,
+        edam:topic_3404,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1016/J.CMPB.2022.106620>,
+        "pubmed:35033756" ;
+    sc:description "A multimodal explanation framework for computer-aided diagnosis of skin lesions." ;
+    sc:featureList edam:operation_3443 ;
+    sc:name "ExAID" ;
+    sc:url "https://exaid.kl.dfki.de/" .
+
 <https://bio.tools/exalign> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0081,
@@ -191501,7 +190858,7 @@ Rest API sync with the EXACT Server https://github.com/ChristianMarzahl/Exact.""
         "Giulio Pavesi" .
 
 <https://bio.tools/examine> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Plug-in",
         "Script" ;
@@ -191521,7 +190878,7 @@ Rest API sync with the EXACT Server https://github.com/ChristianMarzahl/Exact.""
     sc:url "https://github.com/ls-cwi/eXamine" .
 
 <https://bio.tools/excap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654 ;
@@ -191536,7 +190893,7 @@ It uses a depth-first search combined with a branch-and-bound approach to search
     sc:url "http://excap.sbc.su.se/" .
 
 <https://bio.tools/excape-db> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0622,
@@ -191554,7 +190911,7 @@ It uses a depth-first search combined with a branch-and-bound approach to search
     biotools:primaryContact "Jiangming Sun" .
 
 <https://bio.tools/excemplify> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0607 ;
     sc:citation <https://doi.org/10.2390/biecoll-jib-2013-220> ;
@@ -191569,8 +190926,45 @@ It uses a depth-first search combined with a branch-and-bound approach to search
     sc:softwareVersion "1.0" ;
     sc:url "http://sabiork.h-its.org/excemplify/" .
 
+<https://bio.tools/exces-a> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workflow" ;
+    sc:applicationSubCategory edam:topic_0080,
+        edam:topic_0160,
+        edam:topic_0623,
+        edam:topic_3320,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.1515/JIB-2021-0040>,
+        "pmcid:PMC9069663",
+        "pubmed:35254744" ;
+    sc:description "ExceS-A is a fast, exon-centric spliced aligner and is included in the ExonMatchSolver pipeline." ;
+    sc:featureList edam:operation_0232,
+        edam:operation_0292,
+        edam:operation_0433,
+        edam:operation_0525,
+        edam:operation_3359 ;
+    sc:license "Not licensed" ;
+    sc:name "ExceS-A" ;
+    sc:operatingSystem "Linux" ;
+    sc:url "https://github.com/frarei312/ExceS-A-An-Exon-Centric-Split-Aligner" .
+
+<https://bio.tools/excessmort> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_2269,
+        edam:topic_2815 ;
+    sc:citation <https://doi.org/10.1097/EDE.0000000000001445>,
+        "pubmed:35383642" ;
+    sc:description "A Flexible Statistical Framework for Estimating Excess Mortality." ;
+    sc:isAccessibleForFree true ;
+    sc:license "Artistic-2.0" ;
+    sc:name "excessmort" ;
+    sc:operatingSystem "Mac",
+        "Windows" ;
+    sc:url "https://cran.r-project.org/web/packages/excessmort/" .
+
 <https://bio.tools/exfi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_0769,
@@ -191591,7 +190985,7 @@ It uses a depth-first search combined with a branch-and-bound approach to search
     sc:url "https://github.com/jlanga/exfi" .
 
 <https://bio.tools/exhaufs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3170,
@@ -191611,25 +191005,8 @@ It uses a depth-first search combined with a branch-and-bound approach to search
         "Windows" ;
     sc:url "https://github.com/s-a-nersisyan/ExhauFS" .
 
-<https://bio.tools/exhaustive_modelling> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0199,
-        edam:topic_0203,
-        edam:topic_0602,
-        edam:topic_0625 ;
-    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTZ917>,
-        "pubmed:31845959" ;
-    sc:description """A framework for exhaustive modelling of genetic interaction pattern using Petri nets.
-
-Script is used in the modelling framework described in the submitted manuscript "A framework for exhaustive modelling of genetic interaction patterns using Petri nets".
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'MOTIVATION:Genetic'""" ;
-    sc:featureList edam:operation_2426,
-        edam:operation_3891 ;
-    sc:name "exhaustive modelling" ;
-    sc:url "http://www.ibi.vu.nl/programs/ExhMod" .
-
 <https://bio.tools/exhumid> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2815,
@@ -191644,7 +191021,7 @@ Script is used in the modelling framework described in the submitted manuscript
     sc:url "https://cb.imsc.res.in/exhumid/" .
 
 <https://bio.tools/exibd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3056,
         edam:topic_3307,
@@ -191663,7 +191040,7 @@ Script is used in the modelling framework described in the submitted manuscript
     sc:url "http://akeylab.princeton.edu/downloads.html" .
 
 <https://bio.tools/eximir> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0099,
@@ -191684,18 +191061,18 @@ Script is used in the modelling framework described in the submitted manuscript
 
 <https://bio.tools/exms> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ],
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_3468" ;
+            sc:name "Peptide identification" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3654" ;
+            sc:name "Mass spectrometry spectra" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2955" ;
-            sc:name "Sequence report" ;
-            sc:sameAs "http://edamontology.org/data_2955" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2955" ;
+            sc:encodingFormat "http://edamontology.org/format_3468" ;
+            sc:name "Sequence report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -191714,7 +191091,7 @@ Script is used in the modelling framework described in the submitted manuscript
     sc:url "http://hx2.med.upenn.edu/download.html" .
 
 <https://bio.tools/exobcd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_2640,
@@ -191731,7 +191108,7 @@ Script is used in the modelling framework described in the submitted manuscript
     sc:url "https://exobcd.liumwei.org" .
 
 <https://bio.tools/exocarta> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0153,
         edam:topic_0659,
@@ -191753,7 +191130,7 @@ Script is used in the modelling framework described in the submitted manuscript
     biotools:primaryContact "Dr. Suresh Mathivanan" .
 
 <https://bio.tools/exodiversity> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3169,
@@ -191772,8 +191149,27 @@ Script is used in the modelling framework described in the submitted manuscript
         "Windows" ;
     sc:url "https://github.com/NarlikarLab/exoDIVERSITY" .
 
+<https://bio.tools/exodus> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workflow" ;
+    sc:applicationSubCategory edam:topic_0769,
+        edam:topic_3168,
+        edam:topic_3174,
+        edam:topic_3697 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC319>,
+        "pmcid:PMC9191209",
+        "pubmed:35551337" ;
+    sc:description "Exodus is a bioinformatics pipeline aimed to quantify relative abundance of highly similar sequences." ;
+    sc:featureList edam:operation_3198,
+        edam:operation_3219,
+        edam:operation_3799 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "Exodus" ;
+    sc:url "https://github.com/ilyavs/exodus" .
+
 <https://bio.tools/exolocator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654,
@@ -191788,13 +191184,8 @@ Script is used in the modelling framework described in the submitted manuscript
     sc:softwareHelp <https://github.com/mkorpar/swSharp> ;
     sc:url "http://exolocator.bii.a-star.edu.sg/" .
 
-<https://bio.tools/exome_sequencing> a sc:SoftwareApplication ;
-    sc:description "CD Genomics has been providing the flexible and affordable whole exome sequencing service for couple of years. We employ Illumina HiSeq sequencing platform to obtain the genetic variations information in a more efficient way. CD Genomics provides full whole exome sequencing service package including sample standardization, exome capture, library construction, deep sequencing, raw data quality control, and bioinformatics analysis. We can tailor this pipeline to your research interest. If you have additional requirements or questions, please feel free to contact us." ;
-    sc:name "exome sequencing" ;
-    sc:url "https://www.cd-genomics.com/Whole-Exome-Sequencing.html" .
-
 <https://bio.tools/exome_variant_server> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0199 ;
     sc:description "Search the Exome Variant Server for genetic variants identified in patients using a chromosome position." ;
@@ -191808,7 +191199,7 @@ Script is used in the modelling framework described in the submitted manuscript
     sc:url "http://evs.gs.washington.edu/EVS/" .
 
 <https://bio.tools/exomecnv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0199,
@@ -191828,7 +191219,7 @@ Script is used in the modelling framework described in the submitted manuscript
     sc:url "https://cran.r-project.org/src/contrib/Archive/ExomeCNV/" .
 
 <https://bio.tools/exomecopy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3676 ;
@@ -191846,7 +191237,7 @@ Script is used in the modelling framework described in the submitted manuscript
     biotools:primaryContact "Michael Love" .
 
 <https://bio.tools/exomedepth> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0199,
@@ -191874,7 +191265,7 @@ Script is used in the modelling framework described in the submitted manuscript
     biotools:primaryContact "Vincent Plagnol" .
 
 <https://bio.tools/exomepeak> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3676 ;
@@ -191896,7 +191287,7 @@ Script is used in the modelling framework described in the submitted manuscript
         "Lin Zhang" .
 
 <https://bio.tools/exomepicks> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3071,
         edam:topic_3168 ;
@@ -191909,7 +191300,7 @@ Script is used in the modelling framework described in the submitted manuscript
     biotools:primaryContact "Christian Fuchsberger" .
 
 <https://bio.tools/exomiser> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0199,
@@ -191937,7 +191328,7 @@ Script is used in the modelling framework described in the submitted manuscript
         "Dr Jules Jacobsen" .
 
 <https://bio.tools/exon_array_analyzer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0632,
@@ -191960,7 +191351,7 @@ Script is used in the modelling framework described in the submitted manuscript
     biotools:primaryContact "Exon Array Analyzer Support" .
 
 <https://bio.tools/exonerate> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0160,
@@ -191981,7 +191372,7 @@ Script is used in the modelling framework described in the submitted manuscript
     biotools:primaryContact "Ensembl Helpdesk" .
 
 <https://bio.tools/exonfinder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3053,
@@ -191994,8 +191385,30 @@ Script is used in the modelling framework described in the submitted manuscript
     sc:softwareVersion "2.0" ;
     sc:url "http://exonfinder.sourceforge.net/" .
 
+<https://bio.tools/exoplot> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0798,
+        edam:topic_3170,
+        edam:topic_3308,
+        edam:topic_3320,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.1016/J.YGENO.2022.110434>,
+        "pubmed:35863675" ;
+    sc:description "Representation of alternative splicing in human tissues and developmental stages with transposed element (TE) involvement." ;
+    sc:featureList edam:operation_0264,
+        edam:operation_0337,
+        edam:operation_0446 ;
+    sc:isAccessibleForFree true ;
+    sc:name "ExoPLOT" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <http://retrogenomics3.uni-muenster.de:3838/exz-plot-d/how2use.html> ;
+    sc:url "http://retrogenomics3.uni-muenster.de:3838/exz-plot-d/" .
+
 <https://bio.tools/exopred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0602,
@@ -192015,8 +191428,21 @@ Script is used in the modelling framework described in the submitted manuscript
         "Windows" ;
     sc:url "http://imath.med.ucm.es/exopred/" .
 
+<https://bio.tools/exopropred> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:description "ExoProPred is a webserver to predict exosomal proteins based on hybrid model that combines machine learning model with motif-search approach." ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "exopropred" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/exopropred/index.php> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/exopropred/index.php" .
+
 <https://bio.tools/exorthist> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_3320,
@@ -192039,7 +191465,7 @@ Script is used in the modelling framework described in the submitted manuscript
     sc:url "https://github.com/biocorecrg/ExOrthist" .
 
 <https://bio.tools/expa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2259 ;
@@ -192055,7 +191481,7 @@ Script is used in the modelling framework described in the submitted manuscript
     sc:url "http://gcrg.ucsd.edu/Downloads/ExtremePathwayAnalysis" .
 
 <https://bio.tools/expansin-engineering-db> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0152,
         edam:topic_0160,
@@ -192072,7 +191498,7 @@ Script is used in the modelling framework described in the submitted manuscript
     sc:url "https://exed.biocatnet.de" .
 
 <https://bio.tools/expansion-network> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0602,
@@ -192091,14 +191517,14 @@ This GitHub project provides the code for the network inference and model expans
 
 <https://bio.tools/exparna> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3495" ;
-            sc:name "RNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3495" ] ;
+            sc:additionalType "http://edamontology.org/data_3495" ;
+            sc:encodingFormat "http://edamontology.org/format_2200" ;
+            sc:name "RNA sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3466" ;
+            sc:name "Image" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:author "Rolf Backofen",
@@ -192121,18 +191547,18 @@ This GitHub project provides the code for the network inference and model expans
 
 <https://bio.tools/exparna-p> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3495" ;
-            sc:name "RNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3495" ] ;
+            sc:additionalType "http://edamontology.org/data_3495" ;
+            sc:encodingFormat "http://edamontology.org/format_2200" ;
+            sc:name "RNA sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1916" ;
-            sc:name "Alignment" ;
-            sc:sameAs "http://edamontology.org/data_1916" ],
+            sc:additionalType "http://edamontology.org/data_1916" ;
+            sc:encodingFormat "http://edamontology.org/format_1982" ;
+            sc:name "Alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3466" ;
+            sc:name "Image" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0097 ;
@@ -192157,7 +191583,7 @@ This GitHub project provides the code for the network inference and model expans
         "Christina Otto" .
 
 <https://bio.tools/expasy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0121,
@@ -192176,7 +191602,7 @@ This GitHub project provides the code for the network inference and model expans
     biotools:primaryContact "Contact Form" .
 
 <https://bio.tools/expath> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0602,
@@ -192197,7 +191623,7 @@ This GitHub project provides the code for the network inference and model expans
     sc:url "http://EXPath.itps.ncku.edu.tw" .
 
 <https://bio.tools/expectation_pooling> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3169,
         edam:topic_3474 ;
@@ -192210,7 +191636,7 @@ This GitHub project provides the code for the network inference and model expans
     sc:url "https://github.com/gao-lab/ePooling" .
 
 <https://bio.tools/expedit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_3170 ;
@@ -192224,7 +191650,7 @@ This GitHub project provides the code for the network inference and model expans
     sc:url "https://bioinformatics.cineca.it/expedit/" .
 
 <https://bio.tools/experimenthub> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3071 ;
@@ -192242,7 +191668,7 @@ This GitHub project provides the code for the network inference and model expans
     biotools:primaryContact "BioConductor Package Maintainer" .
 
 <https://bio.tools/experimenthubdata> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3489 ;
@@ -192260,7 +191686,7 @@ This GitHub project provides the code for the network inference and model expans
     biotools:primaryContact "BioConductor Package Maintainer" .
 
 <https://bio.tools/experimentsubset> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0219,
         edam:topic_0769,
@@ -192279,7 +191705,7 @@ This GitHub project provides the code for the network inference and model expans
         <https://orcid.org/0000-0003-1839-2527> .
 
 <https://bio.tools/exphewas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0634,
@@ -192296,7 +191722,7 @@ This GitHub project provides the code for the network inference and model expans
     biotools:primaryContact <https://orcid.org/0000-0001-8442-4393> .
 
 <https://bio.tools/exphuntersuite> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3308,
@@ -192319,7 +191745,7 @@ This GitHub project provides the code for the network inference and model expans
     biotools:primaryContact <https://orcid.org/0000-0002-3020-1415> .
 
 <https://bio.tools/expipe> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3071,
         edam:topic_3304,
@@ -192337,7 +191763,7 @@ This GitHub project provides the code for the network inference and model expans
     sc:url "http://github.com/cinpla/expipe" .
 
 <https://bio.tools/explAIner> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0769,
@@ -192351,14 +191777,13 @@ This GitHub project provides the code for the network inference and model expans
 
 <https://bio.tools/explora> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2294" ;
-            sc:name "Sequence variation ID" ;
-            sc:sameAs "http://edamontology.org/data_2294" ] ;
+            sc:additionalType "http://edamontology.org/data_2294" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence variation ID" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:name "Image" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1093/nar/gkw298>,
@@ -192376,8 +191801,21 @@ This GitHub project provides the code for the network inference and model expans
     sc:url "http://bioinformatics.intec.ugent.be/explora-web/" ;
     biotools:primaryContact <http://orcid.org/0000-0002-2169-4588> .
 
+<https://bio.tools/explora-vr> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workbench" ;
+    sc:applicationSubCategory edam:topic_3474,
+        edam:topic_3489 ;
+    sc:citation <https://doi.org/10.1007/S10922-022-09649-5>,
+        "pmcid:PMC8920064" ;
+    sc:description "Content Prefetching for Tile-Based Immersive Video Streaming Applications." ;
+    sc:isAccessibleForFree true ;
+    sc:license "Other" ;
+    sc:name "Explora-VR" ;
+    sc:url "https://github.com/LeandroOrdonez/explora-vr-cache" .
+
 <https://bio.tools/explorase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2259,
@@ -192396,8 +191834,28 @@ This GitHub project provides the code for the network inference and model expans
     sc:url "http://bioconductor.org/packages/release/bioc/html/explorase.html" ;
     biotools:primaryContact "Michael Lawrence" .
 
+<https://bio.tools/explorate> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Workflow" ;
+    sc:applicationSubCategory edam:topic_0621,
+        edam:topic_0749,
+        edam:topic_0769,
+        edam:topic_0798,
+        edam:topic_3170 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC354>,
+        "pubmed:35608310" ;
+    sc:description "A pipeline to explore active transposable elements from RNA-seq data." ;
+    sc:featureList edam:operation_3198,
+        edam:operation_3435,
+        edam:operation_3799 ;
+    sc:license "Not licensed" ;
+    sc:name "ExplorATE" ;
+    sc:operatingSystem "Linux" ;
+    sc:url "https://github.com/FemeniasM/ExplorATEproject" .
+
 <https://bio.tools/exploremodelmatrix> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0625,
@@ -192416,7 +191874,7 @@ This GitHub project provides the code for the network inference and model expans
     sc:url "http://www.bioconductor.org/packages/ExploreModelMatrix/" .
 
 <https://bio.tools/explorerchain> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3063,
         edam:topic_3067,
         edam:topic_3360,
@@ -192436,7 +191894,7 @@ EXpectation Propagation LOgistic REgRession on permissioned blockCHAIN (Explorer
     sc:url "https://github.com/tsungtingkuo/explorerchain" .
 
 <https://bio.tools/expokids> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_3068,
@@ -192455,10 +191913,10 @@ EXpectation Propagation LOgistic REgRession on permissioned blockCHAIN (Explorer
 
 <https://bio.tools/export> a sc:SoftwareApplication ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1093/nar/gkw343>,
@@ -192474,7 +191932,7 @@ EXpectation Propagation LOgistic REgRession on permissioned blockCHAIN (Explorer
     biotools:primaryContact "Galaxy Support Team" .
 
 <https://bio.tools/export-voxel-data> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -192491,7 +191949,7 @@ EXpectation Propagation LOgistic REgRession on permissioned blockCHAIN (Explorer
     biotools:primaryContact "Cyprian Lewandowski" .
 
 <https://bio.tools/export2graphlan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0637,
@@ -192510,10 +191968,10 @@ EXpectation Propagation LOgistic REgRession on permissioned blockCHAIN (Explorer
 
 <https://bio.tools/export_one_data> a sc:SoftwareApplication ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3077 ;
     sc:citation <https://doi.org/10.1093/nar/gkw343>,
@@ -192531,10 +191989,10 @@ EXpectation Propagation LOgistic REgRession on permissioned blockCHAIN (Explorer
 
 <https://bio.tools/export_sbw> a sc:SoftwareApplication ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3077,
         edam:topic_3489 ;
@@ -192552,7 +192010,7 @@ EXpectation Propagation LOgistic REgRession on permissioned blockCHAIN (Explorer
     biotools:primaryContact "Galaxy Support Team" .
 
 <https://bio.tools/exportnastrankm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:description "Export stiffness and mass matrices from NASTRAN" ;
     sc:featureList edam:operation_0461,
@@ -192567,42 +192025,25 @@ EXpectation Propagation LOgistic REgRession on permissioned blockCHAIN (Explorer
     sc:url "https://www.mathworks.com/matlabcentral/fileexchange/74286-exportnastrankm" ;
     biotools:primaryContact "Wei Zhao" .
 
-<https://bio.tools/exposome> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0218,
-        edam:topic_2840,
-        edam:topic_3172 ;
-    sc:citation <https://doi.org/10.1289/EHP4713>,
-        "pmcid:PMC6794490",
-        "pubmed:31557052" ;
-    sc:description "> LOW CONFIDENCE! | > CORRECT NAME OF TOOL COULD ALSO BE 'Blood Exposome', 'Blood Exposome Database', 'Blood Exposome Database Using', 'PubChem' (bio.tools/pubchem) | Generating the Blood Exposome Database Using a Comprehensive Text Mining and Database Fusion Approach | The database is available here www.bloodexposome.org | The exposome represents the sum of all exposures during the life-span of an organism (from chemicals to microbes, viruses, radiation and other sources)" ;
-    sc:featureList edam:operation_0224,
-        edam:operation_0306,
-        edam:operation_3502 ;
-    sc:name "exposome" ;
-    sc:url "http://bloodexposome.org" .
-
 <https://bio.tools/express> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1234" ;
-            sc:name "Sequence set (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1234" ],
+            sc:additionalType "http://edamontology.org/data_1383" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
+            sc:name "Sequence alignment (nucleic acid)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1383" ;
-            sc:name "Sequence alignment (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1383" ] ;
+            sc:additionalType "http://edamontology.org/data_1234" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence set (nucleic acid)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ],
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:name "Report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:name "Report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3169,
@@ -192624,7 +192065,7 @@ EXpectation Propagation LOgistic REgRession on permissioned blockCHAIN (Explorer
     sc:url "https://pachterlab.github.io/eXpress/index.html" .
 
 <https://bio.tools/expressheart> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3170,
@@ -192646,7 +192087,7 @@ EXpectation Propagation LOgistic REgRession on permissioned blockCHAIN (Explorer
     sc:url "http://shiny.bios.unc.edu/expressheart/" .
 
 <https://bio.tools/expression_atlas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0203 ;
     sc:citation <https://doi.org/10.1093/nar/gkv1045> ;
@@ -192661,7 +192102,7 @@ EXpectation Propagation LOgistic REgRession on permissioned blockCHAIN (Explorer
     sc:url "https://www.ebi.ac.uk/gxa/" .
 
 <https://bio.tools/expression_profiler> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3365,
@@ -192678,30 +192119,8 @@ EXpectation Propagation LOgistic REgRession on permissioned blockCHAIN (Explorer
     sc:name "Expression Profiler" ;
     sc:url "http://www.ebi.ac.uk/expressionprofiler/" .
 
-<https://bio.tools/expression_variability> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0203,
-        edam:topic_0654,
-        edam:topic_2830,
-        edam:topic_3295,
-        edam:topic_3518 ;
-    sc:citation <https://doi.org/10.1186/S12864-019-6308-7>,
-        "pmcid:PMC6898959",
-        "pubmed:31810449" ;
-    sc:description """Human gene expression variability and its dependence on methylation and aging.
-
-Source code for "Human Gene Expression Variability and its Dependence on Methylation and Aging".
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'BACKGROUND:Phenotypic', 'Hypo-Variability', 'sex-dependent', 'Hyper-Variability'""" ;
-    sc:featureList edam:operation_2436,
-        edam:operation_2942,
-        edam:operation_3207,
-        edam:operation_3463,
-        edam:operation_3659 ;
-    sc:name "expression variability" ;
-    sc:url "https://github.com/nbashkeel/EV" .
-
 <https://bio.tools/expressionatlas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3168,
         edam:topic_3518 ;
@@ -192719,10 +192138,9 @@ Source code for "Human Gene Expression Variability and its Dependence on Methyla
 
 <https://bio.tools/expressionblast> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:name "Expression data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3277,
@@ -192734,7 +192152,7 @@ Source code for "Human Gene Expression Variability and its Dependence on Methyla
     sc:url "http://expression.ml.cmu.edu:8080/ExpressionBlast/" .
 
 <https://bio.tools/expressionview> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Library" ;
     sc:applicationSubCategory edam:topic_3308,
@@ -192753,7 +192171,7 @@ Source code for "Human Gene Expression Variability and its Dependence on Methyla
     biotools:primaryContact "Gabor Csardi" .
 
 <https://bio.tools/expresso> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0749,
@@ -192768,8 +192186,32 @@ Source code for "Human Gene Expression Variability and its Dependence on Methyla
     biotools:primaryContact "Delasa Aghamirzaie",
         "Karthik Raja Velmurugan" .
 
+<https://bio.tools/expressvis> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0128,
+        edam:topic_0203,
+        edam:topic_3170,
+        edam:topic_3518,
+        edam:topic_3520 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAC399>,
+        "pmcid:PMC9252728",
+        "pubmed:35639516" ;
+    sc:description "A biologist-oriented interactive web server for exploring multi-omics data." ;
+    sc:featureList edam:operation_0533,
+        edam:operation_0571,
+        edam:operation_2949,
+        edam:operation_3223 ;
+    sc:isAccessibleForFree true ;
+    sc:license "LGPL-3.0" ;
+    sc:name "ExpressVis" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://omicsmining.ncpsb.org.cn/ExpressVis" .
+
 <https://bio.tools/expressyourself> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3518 ;
@@ -192788,10 +192230,9 @@ Source code for "Human Gene Expression Variability and its Dependence on Methyla
 
 <https://bio.tools/exprso> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:name "Expression data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3474 ;
@@ -192808,7 +192249,7 @@ Source code for "Human Gene Expression Variability and its Dependence on Methyla
     sc:url "http://github.com/tpq/exprso" .
 
 <https://bio.tools/expvip> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0203,
@@ -192828,8 +192269,30 @@ Source code for "Human Gene Expression Variability and its Dependence on Methyla
     sc:url "http://www.wheat-expression.com/" ;
     biotools:primaryContact "Cristobal Uauy" .
 
+<https://bio.tools/exrnadisease> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0634,
+        edam:topic_0659,
+        edam:topic_3170,
+        edam:topic_3308,
+        edam:topic_3360 ;
+    sc:citation <https://doi.org/10.1016/J.GENE.2022.146662>,
+        "pubmed:35690280" ;
+    sc:description "exRNADisease is a database designed for providing the landscape of different types of extracellular RNAs (mRNAs, lncRNAs, miRNAs, circRNAs, tRFRNAs and piRNAs) from body fluids in human diseases." ;
+    sc:featureList edam:operation_0463 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "exRNADisease" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <http://www.origin-gene.cn/database/exRNAdisease/help.html> ;
+    sc:url "http://www.origin-gene.cn/database/exRNAdisease/" .
+
 <https://bio.tools/exsimo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_3372,
@@ -192844,7 +192307,7 @@ Source code for "Human Gene Expression Variability and its Dependence on Methyla
     sc:url "https://github.com/matthiaskoenig/exsimo" .
 
 <https://bio.tools/exstra> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0625,
@@ -192864,7 +192327,7 @@ Source code for "Human Gene Expression Variability and its Dependence on Methyla
     biotools:primaryContact "Indhu-Shree Rajan-Babu" .
 
 <https://bio.tools/ext-ZINBayes> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3360,
         edam:topic_3518 ;
@@ -192876,28 +192339,26 @@ Source code for "Human Gene Expression Variability and its Dependence on Methyla
     sc:url "https://github.com/JoanaGodinho/ext-ZINBayes" .
 
 <https://bio.tools/extasy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "eXtasy is a pipeline for ranking nonsynonymous single nucleotide variants given a specific phenotype. It takes into account the putative deleteriousness of the variant, haploinsufficiency predictions of the underlying gene and the similarity of the given gene to known genes in the given phenotype." ;
     sc:featureList edam:operation_3226 ;
     sc:name "eXtasy" ;
     sc:url "https://extasy.esat.kuleuven.be/" .
 
 <https://bio.tools/extaxsi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "ExTaxsI (Exploring Taxonomy Information)I is a bioinformatic tool aimed to elaborate and visualize molecular and taxonomic informations. This open-source user friendly project, written in Python 3.7, allows the creation of interactive plots starting from NCBI search query or directly from offline taxonomic files." ;
     sc:name "ExTaxsI" ;
     sc:url "https://github.com/qLSLab/ExTaxsI" .
 
 <https://bio.tools/extract> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3671" ;
-            sc:name "Text" ;
-            sc:sameAs "http://edamontology.org/data_3671" ] ;
+            sc:additionalType "http://edamontology.org/data_3671" ;
+            sc:name "Text" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3779" ;
-            sc:name "Annotated text" ;
-            sc:sameAs "http://edamontology.org/data_3779" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3779" ;
+            sc:name "Annotated text" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API",
         "Web application",
         "Web service" ;
@@ -192918,7 +192379,7 @@ Source code for "Human Gene Expression Variability and its Dependence on Methyla
     biotools:primaryContact "Lars Juhl Jensen" .
 
 <https://bio.tools/extract-platelet-area-fraction-microscope-images> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -192936,18 +192397,18 @@ Source code for "Human Gene Expression Variability and its Dependence on Methyla
 
 <https://bio.tools/extract_archive_merge> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0607,
         edam:topic_3366 ;
@@ -192967,14 +192428,14 @@ Source code for "Human Gene Expression Variability and its Dependence on Methyla
 
 <https://bio.tools/extract_protein_names> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ] ;
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_3747" ;
+            sc:name "Peptide identification" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3021" ;
-            sc:name "UniProt accession" ;
-            sc:sameAs "http://edamontology.org/data_3021" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3021" ;
+            sc:encodingFormat "http://edamontology.org/format_1964" ;
+            sc:name "UniProt accession" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "Script used to extract protein names from a peptide identification file." ;
     sc:featureList edam:operation_3434 ;
     sc:name "extract_protein_names" ;
@@ -192982,14 +192443,12 @@ Source code for "Human Gene Expression Variability and its Dependence on Methyla
 
 <https://bio.tools/extractalign> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:name "Sequence alignment" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0097 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -193019,7 +192478,7 @@ Source code for "Human Gene Expression Variability and its Dependence on Methyla
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/extractalign.html" .
 
 <https://bio.tools/extractbiggestblob> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -193037,14 +192496,14 @@ Source code for "Human Gene Expression Variability and its Dependence on Methyla
 
 <https://bio.tools/extractcentralregions> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_3003" ;
+            sc:name "Annotation track" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3169 ;
     sc:citation <https://doi.org/10.1093/nar/gkw343>,
@@ -193061,14 +192520,12 @@ Source code for "Human Gene Expression Variability and its Dependence on Methyla
 
 <https://bio.tools/extractfeat> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0160 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -193098,7 +192555,7 @@ Source code for "Human Gene Expression Variability and its Dependence on Methyla
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/extractfeat.html" .
 
 <https://bio.tools/extraction-reaction-rates-simbiology> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2259 ;
     sc:description "MATLAB tool fpr extracting reaction rate from SimBiology model." ;
@@ -193112,7 +192569,7 @@ Source code for "Human Gene Expression Variability and its Dependence on Methyla
     biotools:primaryContact "Frank Sommerhage" .
 
 <https://bio.tools/extraction-yield> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3314 ;
     sc:description "Function for calculating the extracted drug fraction in liquid-liquid extraction" ;
@@ -193127,14 +192584,12 @@ Source code for "Human Gene Expression Variability and its Dependence on Methyla
 
 <https://bio.tools/extractseq> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -193164,7 +192619,7 @@ Source code for "Human Gene Expression Variability and its Dependence on Methyla
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/extractseq.html" .
 
 <https://bio.tools/extramapper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3170,
@@ -193182,8 +192637,24 @@ Source code for "Human Gene Expression Variability and its Dependence on Methyla
     sc:url "http://ay-lab-tools.lji.org/extramapper" ;
     biotools:primaryContact <https://orcid.org/0000-0002-0708-6914> .
 
+<https://bio.tools/extramp_online> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0108,
+        edam:topic_0203,
+        edam:topic_2229 ;
+    sc:citation <https://doi.org/10.21203/RS.3.RS-908954/V1> ;
+    sc:description "ExtRamp Online is an interfaced version of the original ExtRamp software that extracts ramp sequences in the browser using Pyodide. All options are set to defaults for an analysis on human genes." ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "ExtRamp Online" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://ramps.byu.edu/ExtRampOnline" .
+
 <https://bio.tools/extrarg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3174,
         edam:topic_3301,
         edam:topic_3474 ;
@@ -193197,7 +192668,7 @@ Source code for "Human Gene Expression Variability and its Dependence on Methyla
     sc:url "https://github.com/gaarangoa/ExtrARG" .
 
 <https://bio.tools/exve> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -193215,7 +192686,7 @@ Source code for "Human Gene Expression Variability and its Dependence on Methyla
     biotools:primaryContact <https://orcid.org/0000-0001-5672-7848> .
 
 <https://bio.tools/eye-disk-segmentation-luminance-channel-active-contour> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -193232,19 +192703,8 @@ Source code for "Human Gene Expression Variability and its Dependence on Methyla
     sc:url "https://www.mathworks.com/matlabcentral/fileexchange/61239-eye-disk-segmentation-using-luminance-channel-and-active-contour" ;
     biotools:primaryContact "Aji Resindra Widya" .
 
-<https://bio.tools/eyeSmart> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3063,
-        edam:topic_3400,
-        edam:topic_3418 ;
-    sc:citation <https://doi.org/10.22605/RRH5255>,
-        "pubmed:31476276" ;
-    sc:description "> MEDIUM CONFIDENCE! | > CORRECT NAME OF TOOL COULD ALSO BE 'eyeSmart EMR', 'EMR' | A novel technology tool to capture the clinical information of patients across rural vision centers in a three-tier eye care network in India using the eyeSmart EMR App | Access to Power BI reports requires Internet Connectivity" ;
-    sc:featureList edam:operation_0306 ;
-    sc:name "eyeSmart" ;
-    sc:url "http://www.lvpei.org/aeye/eyesmartapp.html" .
-
 <https://bio.tools/eyediseases> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -193263,7 +192723,7 @@ Source code for "Human Gene Expression Variability and its Dependence on Methyla
     sc:url "https://eyediseases.bio-data.cn/" .
 
 <https://bio.tools/eyedose> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3315,
         edam:topic_3452 ;
     sc:citation <https://doi.org/10.1016/J.BRACHY.2020.09.007>,
@@ -193274,7 +192734,7 @@ Source code for "Human Gene Expression Variability and its Dependence on Methyla
     sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=33187821" .
 
 <https://bio.tools/eyeloop> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3303,
         edam:topic_3304,
@@ -193291,7 +192751,7 @@ Source code for "Human Gene Expression Variability and its Dependence on Methyla
     sc:url "https://github.com/simonarvin/eyeloop" .
 
 <https://bio.tools/ezTrack> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3500 ;
@@ -193308,7 +192768,7 @@ This repository contains iPython files that can be used to track the location, m
     sc:url "http://github.com/DeniseCaiLab/ezTrack" .
 
 <https://bio.tools/ezaai> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0154,
@@ -193325,7 +192785,7 @@ This repository contains iPython files that can be used to track the location, m
     biotools:primaryContact "Jongsik Chun" .
 
 <https://bio.tools/ezcalcium> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3304,
@@ -193342,7 +192802,7 @@ This repository contains iPython files that can be used to track the location, m
     sc:url "https://github.com/porteralab/EZcalcium" .
 
 <https://bio.tools/ezcount> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_3168,
@@ -193360,7 +192820,7 @@ This repository contains iPython files that can be used to track the location, m
     biotools:primaryContact <https://orcid.org/0000-0002-5047-0196> .
 
 <https://bio.tools/ezgeno> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3169,
@@ -193375,7 +192835,7 @@ This repository contains iPython files that can be used to track the location, m
     sc:url "https://github.com/ailabstw/ezGeno" .
 
 <https://bio.tools/ezimputer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3053 ;
     sc:description "The EZImputer workflow is a modular set of scripts for genome-wide imputation. It automates many of the steps regularly needed for an imputation project." ;
@@ -193387,7 +192847,7 @@ This repository contains iPython files that can be used to track the location, m
     sc:url "http://bioinformaticstools.mayo.edu/research/ezimputer/" .
 
 <https://bio.tools/ezmito> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0084,
@@ -193406,8 +192866,24 @@ This repository contains iPython files that can be used to track the location, m
     sc:url "http://ezmito.unisi.it" ;
     biotools:primaryContact <https://orcid.org/0000-0002-3165-9620> .
 
+<https://bio.tools/eztree> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0080,
+        edam:topic_3293 ;
+    sc:description "ezTree is a Perl pipeline for identifying marker genes and build phylogenetic trees for a set of genomes. This script is used to get single copy marker genes from a set of genomes, including genome bins recovered from metagenomes, and align them for phylogenetic tree reconstruction." ;
+    sc:featureList edam:operation_0323,
+        edam:operation_3200,
+        edam:operation_3798 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "ezTree" ;
+    sc:softwareHelp <https://github.com/yuwwu/ezTree/blob/master/Tutorial.pdf> ;
+    sc:url "https://github.com/yuwwu/ezTree" ;
+    biotools:primaryContact "Yu-Wei Wu" .
+
 <https://bio.tools/f-seq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3168 ;
@@ -193421,7 +192897,7 @@ This repository contains iPython files that can be used to track the location, m
     sc:url "https://github.com/aboyle/F-seq" .
 
 <https://bio.tools/f3uter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
@@ -193439,7 +192915,7 @@ This repository contains iPython files that can be used to track the location, m
     sc:url "https://astx.shinyapps.io/F3UTER/" .
 
 <https://bio.tools/f5c> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3295,
         edam:topic_3316,
@@ -193456,7 +192932,7 @@ This repository contains iPython files that can be used to track the location, m
     sc:url "https://hasindu2008.github.io/f5c/" .
 
 <https://bio.tools/faa-mouse-brain> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_3304,
@@ -193472,7 +192948,7 @@ This repository contains iPython files that can be used to track the location, m
     sc:url "https://github.com/ntakata/flexible-annotation-atlas" .
 
 <https://bio.tools/faang_data_portal> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Bioinformatics portal" ;
     sc:applicationSubCategory edam:topic_0605,
         edam:topic_0625,
@@ -193494,7 +192970,7 @@ This repository contains iPython files that can be used to track the location, m
     sc:url "https://data.faang.org" .
 
 <https://bio.tools/faapred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078 ;
     sc:citation <https://doi.org/10.1371/journal.pone.0009695> ;
@@ -193509,7 +192985,7 @@ This repository contains iPython files that can be used to track the location, m
     sc:url "http://bioinfo.icgeb.res.in/faap/" .
 
 <https://bio.tools/faas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3382 ;
     sc:citation <https://doi.org/10.12688/F1000RESEARCH.2-68.V1>,
@@ -193521,7 +192997,7 @@ This repository contains iPython files that can be used to track the location, m
     sc:url "http://faas.bme.unc.edu" .
 
 <https://bio.tools/fabia> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2269 ;
@@ -193541,12 +193017,35 @@ This repository contains iPython files that can be used to track the location, m
     sc:url "http://bioconductor.org/packages/release/bioc/html/fabia.html" ;
     biotools:primaryContact <http://orcid.org/0000-0001-7449-2528> .
 
+<https://bio.tools/fabian-variant> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0749,
+        edam:topic_2269,
+        edam:topic_3169 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAC393>,
+        "pmcid:PMC9252790",
+        "pubmed:35639768" ;
+    sc:description "FABIAN-variant uses transcription factor flexible models (TFFMs) and position weight matrices (PWMs) to predict the effect of DNA variants on transcription factor binding." ;
+    sc:featureList edam:operation_0331,
+        edam:operation_0372,
+        edam:operation_0445 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "FABIAN-variant" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://www.genecascade.org/fabian/documentation>,
+        <https://www.genecascade.org/fabian/tutorial> ;
+    sc:url "https://www.genecascade.org/fabian/" .
+
 <https://bio.tools/fabox> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1111/j.1471-8286.2007.01821.x> ;
@@ -193567,7 +193066,7 @@ This repository contains iPython files that can be used to track the location, m
     biotools:primaryContact "Palle Villesen Fredsted" .
 
 <https://bio.tools/fabric-cancer-portal> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -193582,7 +193081,7 @@ This repository contains iPython files that can be used to track the location, m
     sc:url "http://fabric-cancer.huji.ac.il" .
 
 <https://bio.tools/facets> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3305,
@@ -193602,30 +193101,30 @@ This repository contains iPython files that can be used to track the location, m
 
 <https://bio.tools/facopy> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1276" ;
-            sc:name "Nucleic acid features" ;
-            sc:sameAs "http://edamontology.org/data_1276" ],
+            sc:additionalType "http://edamontology.org/data_1276" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Nucleic acid features" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ],
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Sequence variations" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0920" ;
-            sc:name "Genotype/phenotype report" ;
-            sc:sameAs "http://edamontology.org/data_0920" ] ;
+            sc:additionalType "http://edamontology.org/data_0920" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Genotype/phenotype report" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ],
+            sc:additionalType "http://edamontology.org/data_0920" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Genotype/phenotype report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2353" ;
-            sc:name "Ontology data" ;
-            sc:sameAs "http://edamontology.org/data_2353" ],
+            sc:additionalType "http://edamontology.org/data_2353" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Ontology data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0920" ;
-            sc:name "Genotype/phenotype report" ;
-            sc:sameAs "http://edamontology.org/data_0920" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0199,
@@ -193646,7 +193145,7 @@ This repository contains iPython files that can be used to track the location, m
     biotools:primaryContact "David Mosen-Ansorena" .
 
 <https://bio.tools/facs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0080,
@@ -193662,7 +193161,7 @@ This repository contains iPython files that can be used to track the location, m
     biotools:primaryContact "Enze Liu" .
 
 <https://bio.tools/facs-amp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -193687,8 +193186,31 @@ FACS pipeline - Fast AMP Classification System.""" ;
     sc:name "FACS" ;
     sc:url "https://github.com/FACS-Antimicrobial-Peptides-Prospection/FACS/" .
 
+<https://bio.tools/fact-seq> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_2640,
+        edam:topic_3295,
+        edam:topic_3512,
+        edam:topic_3519 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAB813>,
+        "pmcid:PMC8643707",
+        "pubmed:34534335" ;
+    sc:description "Profiling histone modifications in formalin-fixed paraffin-embedded samples with low cell numbers." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_0416,
+        edam:operation_3222 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "FACT-seq" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/pengweixing/FACT" .
+
 <https://bio.tools/facta_plus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0218,
@@ -193710,7 +193232,7 @@ FACS pipeline - Fast AMP Classification System.""" ;
     biotools:primaryContact "Yoshimasa Tsuruoka" .
 
 <https://bio.tools/factdesign> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3518 ;
@@ -193726,8 +193248,31 @@ FACS pipeline - Fast AMP Classification System.""" ;
     sc:url "http://bioconductor.org/packages/release/bioc/html/factDesign.html" ;
     biotools:primaryContact "Denise Scholtens" .
 
+<https://bio.tools/factorbook> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0749,
+        edam:topic_3169,
+        edam:topic_3170,
+        edam:topic_3295,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAB1039>,
+        "pmcid:PMC8728199",
+        "pubmed:34755879" ;
+    sc:description "An updated catalog of transcription factor motifs and candidate regulatory motif sites." ;
+    sc:featureList edam:operation_0238,
+        edam:operation_0239,
+        edam:operation_0445,
+        edam:operation_3454 ;
+    sc:isAccessibleForFree true ;
+    sc:name "Factorbook" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://www.factorbook.org" .
+
 <https://bio.tools/factorhne> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_0749,
@@ -193743,7 +193288,7 @@ FACS pipeline - Fast AMP Classification System.""" ;
     sc:url "https://github.com/xasdzxc/FactorHNE" .
 
 <https://bio.tools/factorviz> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:citation <https://doi.org/10.1038/s41596-020-0369-6> ;
     sc:description "FactorViz provides an interactive visualization and reporting environment for exploring the results of the methylome decomposition experiments carried out by MeDeCom or similar deconvolution tools." ;
     sc:name "FactorViz" ;
@@ -193751,7 +193296,7 @@ FACS pipeline - Fast AMP Classification System.""" ;
     sc:url "https://github.com/CompEpigen/FactorViz" .
 
 <https://bio.tools/fad-bert> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0154,
@@ -193769,7 +193314,7 @@ During cellular respiration in general and electron transport chain in particula
     sc:url "http://140.138.155.216/fadbert/" .
 
 <https://bio.tools/fada> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3168,
         edam:topic_3308,
@@ -193785,7 +193330,7 @@ During cellular respiration in general and electron transport chain in particula
     sc:url "https://shiny-bird.univ-nantes.fr/app/Fada" .
 
 <https://bio.tools/fadb-china> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_3068,
@@ -193799,8 +193344,18 @@ During cellular respiration in general and electron transport chain in particula
     sc:name "FADB-China" ;
     sc:url "http://www.rxnfinder.org/FADB-China/" .
 
+<https://bio.tools/fadpred> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:description "FADPred is a web-server specially trained for the FAD interacting residues. The prediction is based on the basis of binary pattern of 17 window motif of amino acid sequence by using support vector machines(SVM)." ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "fadpred" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/fadpred/index.html> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/fadpred/index.html" .
+
 <https://bio.tools/fadu> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0114,
@@ -193824,7 +193379,7 @@ In most prokaryotic systems, full-length transcript sequences are unavailable, c
     sc:url "https://github.com/IGS/FADU" .
 
 <https://bio.tools/fae> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_2640,
@@ -193843,7 +193398,7 @@ In most prokaryotic systems, full-length transcript sequences are unavailable, c
     sc:url "https://github.com/salan668/FAE" .
 
 <https://bio.tools/faers> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_3305,
         edam:topic_3325,
@@ -193871,18 +193426,18 @@ A simple search of FAERS data cannot be performed with these files by persons wh
 
 <https://bio.tools/faf-drugs> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1463" ;
-            sc:name "Small molecule structure" ;
-            sc:sameAs "http://edamontology.org/data_1463" ] ;
+            sc:additionalType "http://edamontology.org/data_1463" ;
+            sc:encodingFormat "http://edamontology.org/format_3814" ;
+            sc:name "Small molecule structure" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1463" ;
-            sc:name "Small molecule structure" ;
-            sc:sameAs "http://edamontology.org/data_1463" ],
+            sc:additionalType "http://edamontology.org/data_2087" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Molecular property" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2087" ;
-            sc:name "Molecular property" ;
-            sc:sameAs "http://edamontology.org/data_2087" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1463" ;
+            sc:encodingFormat "http://edamontology.org/format_3814" ;
+            sc:name "Small molecule structure" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3336 ;
     sc:citation "pubmed:16845110" ;
@@ -193898,7 +193453,7 @@ A simple search of FAERS data cannot be performed with these files by persons wh
         "David Lagorce" .
 
 <https://bio.tools/fagin> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3170,
@@ -193916,38 +193471,31 @@ A simple search of FAERS data cannot be performed with these files by persons wh
 
 <https://bio.tools/faidare> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0842" ;
-            sc:name "Identifier" ;
-            sc:sameAs "http://edamontology.org/data_0842" ],
+            sc:additionalType "http://edamontology.org/data_0968" ;
+            sc:name "Keyword" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0968" ;
-            sc:name "Keyword" ;
-            sc:sameAs "http://edamontology.org/data_0968" ],
+            sc:additionalType "http://edamontology.org/data_0842" ;
+            sc:name "Identifier" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2353" ;
-            sc:name "Ontology data" ;
-            sc:sameAs "http://edamontology.org/data_2353" ] ;
+            sc:additionalType "http://edamontology.org/data_2353" ;
+            sc:name "Ontology data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2080" ;
-            sc:name "Database search results" ;
-            sc:sameAs "http://edamontology.org/data_2080" ],
+            sc:additionalType "http://edamontology.org/data_1188" ;
+            sc:name "DOI" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0842" ;
-            sc:name "Identifier" ;
-            sc:sameAs "http://edamontology.org/data_0842" ],
+            sc:additionalType "http://edamontology.org/data_3720" ;
+            sc:name "Geographic location" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3720" ;
-            sc:name "Geographic location" ;
-            sc:sameAs "http://edamontology.org/data_3720" ],
+            sc:additionalType "http://edamontology.org/data_2093" ;
+            sc:name "Data reference" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1188" ;
-            sc:name "DOI" ;
-            sc:sameAs "http://edamontology.org/data_1188" ],
+            sc:additionalType "http://edamontology.org/data_0842" ;
+            sc:name "Identifier" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2093" ;
-            sc:name "Data reference" ;
-            sc:sameAs "http://edamontology.org/data_2093" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2080" ;
+            sc:encodingFormat "http://edamontology.org/format_3620" ;
+            sc:name "Database search results" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web API",
         "Web application",
@@ -193984,7 +193532,7 @@ It is an extension of the generic DataDiscovery portal, a web portal that allows
     biotools:primaryContact "URGI support" .
 
 <https://bio.tools/faims_mobile> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3077 ;
     sc:citation <https://doi.org/10.1016/j.softx.2017.12.006> ;
@@ -193996,8 +193544,68 @@ It is an extension of the generic DataDiscovery portal, a web portal that allows
     sc:softwareHelp <https://faimsproject.atlassian.net/wiki/spaces/FAIMS/overview> ;
     sc:url "https://github.com/ElsevierSoftwareX/SOFTX-D-17-00021" .
 
+<https://bio.tools/fair-checker> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_0842" ;
+            sc:encodingFormat "http://edamontology.org/format_2376" ;
+            sc:name "Identifier" ] ;
+    bsc:output [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2353" ;
+            sc:encodingFormat "http://edamontology.org/format_2376" ;
+            sc:name "Ontology data" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_3914" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Quality control report" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2337" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Resource metadata" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0089,
+        edam:topic_3316 ;
+    sc:description "FAIR-Checker is a tool aimed at assessing FAIR principles and empowering data provider to enhance the quality of their digital resources. Data providers and consumers can check how FAIR are web resources. Developers can explore and inspect metadata exposed in web resources." ;
+    sc:featureList edam:operation_0224,
+        edam:operation_0336,
+        edam:operation_2428 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "FAIR-Checker" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareVersion "1.0.4" ;
+    sc:url "https://fair-checker.france-bioinformatique.fr" .
+
+<https://bio.tools/fair4health_data_curation_tool> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:description "This is a standalone, desktop application developed by the FAIR4Health project (https://www.fair4health.eu/). The tool is used to connect the health data sources which can be in various formats (Excel files, CSV files, SQL databases) and migrate data into a HL7 FHIR Repository. The tool shows the available FHIR profiles to the user so that he/she can perform mappings appropriately. The tool can also contact a Terminology Server (which is actually another HL7 FHIR Repository) so that data fields can be annotated if coding schemes such as ICD10 or SNOMED-CT are in use." ;
+    sc:isAccessibleForFree true ;
+    sc:license "CC-BY-4.0" ;
+    sc:name "FAIR4Health Data Curation Tool" ;
+    sc:softwareHelp <https://osf.io/tv3fw/>,
+        <https://www.youtube.com/watch?v=9FfG-sH4RXE&t=90s> ;
+    sc:softwareVersion "v1.2.5" ;
+    sc:url "https://osf.io/tv3fw/" .
+
+<https://bio.tools/fair4health_data_privacy_tool> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_3861" ;
+            sc:name "Electronic health record" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:description "This is a standalone, desktop application developed by the FAIR4Health project (https://www.fair4health.eu/). The tool aims to handle the privacy challenges exposed by the sensitive health data. It is designed to work on an HL7 FHIR API so that it can be used on top of any standard FHIR Repository as a data de-identification, anonymization, and related actions toolset. The tool accesses FHIR resources, presents metadata to the user, guide the user about the configuration to be applied and then output the processed FHIR resources." ;
+    sc:featureList edam:operation_3283 ;
+    sc:isAccessibleForFree true ;
+    sc:license "CC-BY-4.0" ;
+    sc:name "FAIR4Health Data Privacy Tool" ;
+    sc:softwareHelp <https://osf.io/ywhrj/>,
+        <https://www.youtube.com/watch?v=sWzUv1RNSvI> ;
+    sc:softwareVersion "v1.1.1" ;
+    sc:url "https://osf.io/ywhrj/" .
+
 <https://bio.tools/fairscape> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0769,
@@ -194013,7 +193621,7 @@ It is an extension of the generic DataDiscovery portal, a web portal that allows
     sc:url "https://fairscape.github.io/" .
 
 <https://bio.tools/falc-loop> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
@@ -194034,7 +193642,7 @@ It is an extension of the generic DataDiscovery portal, a web portal that allows
     sc:url "http://galaxy.seoklab.org/softwares/falc.html" .
 
 <https://bio.tools/falco> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0769,
@@ -194049,7 +193657,7 @@ It is an extension of the generic DataDiscovery portal, a web portal that allows
     sc:url "https://github.com/smithlabcode/falco" .
 
 <https://bio.tools/falco-rna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0203,
@@ -194067,7 +193675,7 @@ It is an extension of the generic DataDiscovery portal, a web portal that allows
     sc:url "https://github.com/VCCRI/Falco" .
 
 <https://bio.tools/falcon> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196 ;
     sc:citation <https://doi.org/10.5281/zenodo.35745> ;
@@ -194082,7 +193690,7 @@ It is an extension of the generic DataDiscovery portal, a web portal that allows
     biotools:primaryContact "Thomas Sauter" .
 
 <https://bio.tools/falcon-clust> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -194099,7 +193707,7 @@ The falcon spectrum clustering tool uses advanced algorithmic techniques for hig
     sc:url "https://github.com/bittremieux/falcon" .
 
 <https://bio.tools/falcon_networks> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2229,
@@ -194117,7 +193725,7 @@ The falcon spectrum clustering tool uses advanced algorithmic techniques for hig
     biotools:primaryContact "Thomas Sauter" .
 
 <https://bio.tools/falcon_server> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3304 ;
     sc:citation <https://doi.org/10.1088/1741-2552/AA7526>,
@@ -194131,7 +193739,7 @@ OBJECTIVE:Closed-loop experiments provide unique insights into brain dynamics an
     sc:url "https://bitbucket.org/kloostermannerflab/workspace/projects/LOOP" .
 
 <https://bio.tools/falsecolor-python> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0634,
@@ -194147,7 +193755,7 @@ OBJECTIVE:Closed-loop experiments provide unique insights into brain dynamics an
     sc:url "https://github.com/serrob23/falsecolor" .
 
 <https://bio.tools/famagg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0084,
@@ -194168,7 +193776,7 @@ OBJECTIVE:Closed-loop experiments provide unique insights into brain dynamics an
     biotools:primaryContact <http://orcid.org/0000-0002-6977-7147> .
 
 <https://bio.tools/famasito> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3520,
@@ -194181,7 +193789,7 @@ OBJECTIVE:Closed-loop experiments provide unique insights into brain dynamics an
     sc:url "http://innovation.columbia.edu/technologies/CU18208_FAMASITO" .
 
 <https://bio.tools/famd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3053 ;
     sc:citation <https://doi.org/10.1111/j.1471-8286.2006.01225.x> ;
@@ -194196,7 +193804,7 @@ OBJECTIVE:Closed-loop experiments provide unique insights into brain dynamics an
     sc:url "http://www.famd.me.uk/famd.html" .
 
 <https://bio.tools/famdenovo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_2640,
@@ -194213,7 +193821,7 @@ OBJECTIVE:Closed-loop experiments provide unique insights into brain dynamics an
     sc:url "http://bioinformatics.mdanderson.org/public-software/famdenovo" .
 
 <https://bio.tools/fame> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_2259,
@@ -194231,7 +193839,7 @@ OBJECTIVE:Closed-loop experiments provide unique insights into brain dynamics an
     biotools:primaryContact "Support" .
 
 <https://bio.tools/fame-msa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0621,
@@ -194246,7 +193854,7 @@ OBJECTIVE:Closed-loop experiments provide unique insights into brain dynamics an
     sc:url "http://github.com/naznoosh/msa" .
 
 <https://bio.tools/fame_aberrations> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Workbench" ;
     sc:applicationSubCategory edam:topic_0622,
@@ -194269,7 +193877,7 @@ OBJECTIVE:Closed-loop experiments provide unique insights into brain dynamics an
     sc:url "https://github.com/demichelislab/FaME" .
 
 <https://bio.tools/famfetch> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3293,
         edam:topic_3489 ;
@@ -194284,7 +193892,7 @@ OBJECTIVE:Closed-loop experiments provide unique insights into brain dynamics an
     sc:url "http://pbil.univ-lyon1.fr/software/famfetch.html" .
 
 <https://bio.tools/famflm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3517 ;
     sc:citation <https://doi.org/10.1371/journal.pone.0128999> ;
@@ -194299,7 +193907,7 @@ OBJECTIVE:Closed-loop experiments provide unique insights into brain dynamics an
         "Nadezhda Belonogova" .
 
 <https://bio.tools/family-rank> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0736,
         edam:topic_2269,
@@ -194317,7 +193925,7 @@ OBJECTIVE:Closed-loop experiments provide unique insights into brain dynamics an
     biotools:primaryContact "Michelle Saul" .
 
 <https://bio.tools/famplex> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0218,
         edam:topic_0623,
@@ -194336,14 +193944,14 @@ OBJECTIVE:Closed-loop experiments provide unique insights into brain dynamics an
 
 <https://bio.tools/famsa> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1233" ;
-            sc:name "Sequence set (protein)" ;
-            sc:sameAs "http://edamontology.org/data_1233" ] ;
+            sc:additionalType "http://edamontology.org/data_1233" ;
+            sc:encodingFormat "http://edamontology.org/format_2200" ;
+            sc:name "Sequence set (protein)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1384" ;
-            sc:name "Protein sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_1384" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1384" ;
+            sc:encodingFormat "http://edamontology.org/format_1332" ;
+            sc:name "Protein sequence alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080 ;
@@ -194358,7 +193966,7 @@ OBJECTIVE:Closed-loop experiments provide unique insights into brain dynamics an
     sc:url "https://github.com/refresh-bio/FAMSA" .
 
 <https://bio.tools/fan-c> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0102,
@@ -194374,7 +193982,7 @@ OBJECTIVE:Closed-loop experiments provide unique insights into brain dynamics an
     sc:url "https://github.com/vaquerizaslab/fanc" .
 
 <https://bio.tools/fancy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3169,
@@ -194391,7 +193999,7 @@ OBJECTIVE:Closed-loop experiments provide unique insights into brain dynamics an
     sc:url "http://fancy.gersteinlab.org" .
 
 <https://bio.tools/fandom> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0102,
@@ -194409,8 +194017,24 @@ OBJECTIVE:Closed-loop experiments provide unique insights into brain dynamics an
     sc:name "FaNDOM" ;
     sc:url "https://github.com/jluebeck/FaNDOM" .
 
+<https://bio.tools/fanet> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Desktop application" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_3382,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1109/TNNLS.2022.3159394>,
+        "pubmed:35333723" ;
+    sc:description "A Feedback Attention Network for Improved Biomedical Image Segmentation." ;
+    sc:featureList edam:operation_3443,
+        edam:operation_3799,
+        edam:operation_3927 ;
+    sc:license "Not licensed" ;
+    sc:name "FANet" ;
+    sc:url "https://github.com/nikhilroxtomar/FANet" .
+
 <https://bio.tools/fangnet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0202,
         edam:topic_3303,
@@ -194425,7 +194049,7 @@ OBJECTIVE:Closed-loop experiments provide unique insights into brain dynamics an
     sc:url "http://fangnet.org" .
 
 <https://bio.tools/fangorn_forest> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0219,
         edam:topic_3474 ;
@@ -194443,7 +194067,7 @@ OBJECTIVE:Closed-loop experiments provide unique insights into brain dynamics an
         "Fabio R. Cerqueira" .
 
 <https://bio.tools/fanmod> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2259 ;
@@ -194460,7 +194084,7 @@ OBJECTIVE:Closed-loop experiments provide unique insights into brain dynamics an
     sc:url "http://theinf1.informatik.uni-jena.de/~wernicke/motifs/index.html" .
 
 <https://bio.tools/fantastic-databases> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Bioinformatics portal",
         "Database portal" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -194480,7 +194104,7 @@ OBJECTIVE:Closed-loop experiments provide unique insights into brain dynamics an
     biotools:primaryContact <https://orcid.org/0000-0003-4977-6662> .
 
 <https://bio.tools/fanten> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0593 ;
     sc:citation "pubmed:25416616" ;
@@ -194491,7 +194115,7 @@ OBJECTIVE:Closed-loop experiments provide unique insights into brain dynamics an
     sc:url "http://fanten-enmr.cerm.unifi.it:8080/" .
 
 <https://bio.tools/fantom> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0749,
@@ -194510,7 +194134,7 @@ OBJECTIVE:Closed-loop experiments provide unique insights into brain dynamics an
     biotools:primaryContact "Fantom Support" .
 
 <https://bio.tools/fantom_funannotmouse> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0749,
@@ -194529,7 +194153,7 @@ OBJECTIVE:Closed-loop experiments provide unique insights into brain dynamics an
         "questions or comments on Annotation or FANTOM system" .
 
 <https://bio.tools/faret> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3068,
         edam:topic_3382 ;
@@ -194544,7 +194168,7 @@ OBJECTIVE:Closed-loop experiments provide unique insights into brain dynamics an
     sc:url "https://github.com/fsotoc/FaReT" .
 
 <https://bio.tools/farms> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3518 ;
@@ -194563,7 +194187,7 @@ OBJECTIVE:Closed-loop experiments provide unique insights into brain dynamics an
     biotools:primaryContact <http://orcid.org/0000-0003-4191-2156> .
 
 <https://bio.tools/farmtest> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3384 ;
@@ -194578,7 +194202,7 @@ OBJECTIVE:Closed-loop experiments provide unique insights into brain dynamics an
     sc:url "https://cran.r-project.org/package=FarmTest" .
 
 <https://bio.tools/fas2nex> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:description "Fas2Nex  can read a .FAS (FASTA) file and save it as .NEX (NEXUS) file (or again as a .fas file) for phylogenetic analysis with PAUP*, with the option of removing columns of characters consisting only of gaps. If necessary, the ends of short sequences in the .fas file will be padded to full length." ;
@@ -194590,7 +194214,7 @@ OBJECTIVE:Closed-loop experiments provide unique insights into brain dynamics an
     sc:url "http://www.famd.me.uk/AGL/AGL_sw.html" .
 
 <https://bio.tools/fasparser> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0632,
@@ -194606,7 +194230,7 @@ OBJECTIVE:Closed-loop experiments provide unique insights into brain dynamics an
     biotools:primaryContact "Yan-Bo Sun" .
 
 <https://bio.tools/faspr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
@@ -194626,7 +194250,7 @@ OBJECTIVE:Closed-loop experiments provide unique insights into brain dynamics an
     sc:url "https://zhanglab.ccmb.med.umich.edu/FASPR" .
 
 <https://bio.tools/fassign> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3542 ;
     sc:description "FAssign (Fuzzy Assignment) is new algorithm for the protein secondary structure assignment, using fuzzy logic based on backbone angles." ;
@@ -194637,7 +194261,7 @@ OBJECTIVE:Closed-loop experiments provide unique insights into brain dynamics an
     sc:url "http://bs.ipm.ir/softwares/fassign/" .
 
 <https://bio.tools/fast> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0622 ;
@@ -194651,7 +194275,7 @@ OBJECTIVE:Closed-loop experiments provide unique insights into brain dynamics an
     biotools:primaryContact "Takashi Abe" .
 
 <https://bio.tools/fast-auc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:description "A fast method to compute AUC (area under the curve)." ;
     sc:isAccessibleForFree true ;
@@ -194664,7 +194288,7 @@ OBJECTIVE:Closed-loop experiments provide unique insights into brain dynamics an
     biotools:primaryContact "Lior Kirsch" .
 
 <https://bio.tools/fast-gaussian-psf-fitting-mex> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3318,
@@ -194682,7 +194306,7 @@ OBJECTIVE:Closed-loop experiments provide unique insights into brain dynamics an
     biotools:primaryContact "Simon Christoph Stein" .
 
 <https://bio.tools/fast-gbs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0769 ;
     sc:citation <https://doi.org/10.1139/GEN-2020-0077>,
@@ -194696,8 +194320,28 @@ OBJECTIVE:Closed-loop experiments provide unique insights into brain dynamics an
     sc:softwareVersion "2.0" ;
     sc:url "https://bitbucket.org/jerlar73/fast-gbs_v2/src/master/" .
 
+<https://bio.tools/fast-hbr> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0196,
+        edam:topic_3168,
+        edam:topic_3174 ;
+    sc:citation <https://doi.org/10.6026/97320630018036>,
+        "pmcid:PMC9200608",
+        "pubmed:35815196" ;
+    sc:description "Fast-HBR is duplicate reads removing tool from fastq and fasta files. Fast-HBR is fast and memory-efficient because it does not need to store reads in string form on the memory. Instead of that, it will store their hash value as integer. Moreover, it will write directly to the output file and remove duplicate reads on-the-fly." ;
+    sc:featureList edam:operation_3219,
+        edam:operation_3359 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "Fast-HBR" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/Sami-Altayyar/Fast-HBR" .
+
 <https://bio.tools/fast-lmm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3474,
@@ -194714,7 +194358,7 @@ OBJECTIVE:Closed-loop experiments provide unique insights into brain dynamics an
     sc:url "https://www.microsoft.com/en-us/research/project/fastlmm/" .
 
 <https://bio.tools/fast-perfcurve> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:description "A faster version of perfcurve for False- and True Positive Rate." ;
     sc:isAccessibleForFree true ;
@@ -194727,7 +194371,7 @@ OBJECTIVE:Closed-loop experiments provide unique insights into brain dynamics an
     biotools:primaryContact "Hanan Shteingart" .
 
 <https://bio.tools/fastER> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2229,
@@ -194745,7 +194389,7 @@ OBJECTIVE:Closed-loop experiments provide unique insights into brain dynamics an
     biotools:primaryContact "Timm Schroeder" .
 
 <https://bio.tools/fastJT> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3474,
@@ -194770,28 +194414,14 @@ OBJECTIVE:Closed-loop experiments provide unique insights into brain dynamics an
     sc:url "https://cran.r-project.org/package=fastJT" ;
     biotools:primaryContact "Jiaxing Lin" .
 
-<https://bio.tools/fastLmPure> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0625,
-        edam:topic_2885,
-        edam:topic_3517 ;
-    sc:citation <https://doi.org/10.1007/S00122-019-03439-5>,
-        "pubmed:31552442" ;
-    sc:description "> LOW CONFIDENCE! | > HOMEPAGE MISSING! | > CORRECT NAME OF TOOL COULD ALSO BE 'Single-RunKing', 'barebones' | Genome-wide barebones regression scan for mixed-model association analysis | KEY MESSAGE:Based on the simplified FaST-LMM, wherein genomic variance is replaced with heritability, we have significantly improved computational efficiency by implementing rapid R fastLmPure to statistically infer the genetic effects of tested SNPs and focus on large or highly significant SNPs obtained using the EMMAX algorithm. For a genome-wide mixed-model association analysis, we introduce a barebones linear model fitting function called fastLmPure from the R RcppArmadillo package for the rapid estimation of single nucleotide polymorphism (SNP) effects and the maximum likelihood values of factored spectrally transformed linear mixed models (FaST-LMM)" ;
-    sc:featureList edam:operation_3196,
-        edam:operation_3659 ;
-    sc:name "fastLmPure" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31552442" .
-
 <https://bio.tools/fasta> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0857" ;
-            sc:name "Sequence search results" ;
-            sc:sameAs "http://edamontology.org/data_0857" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0857" ;
+            sc:name "Sequence search results" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0157,
@@ -194815,7 +194445,7 @@ OBJECTIVE:Closed-loop experiments provide unique insights into brain dynamics an
     biotools:primaryContact "Support" .
 
 <https://bio.tools/fasta_canonical_sequences> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:description "FASTA Canonical Sequences deletes comments from FASTA files. It can also change sequences by deleting specified characters or whitespace, introduce newlines for readibility, or change sequence case." ;
@@ -194829,14 +194459,14 @@ OBJECTIVE:Closed-loop experiments provide unique insights into brain dynamics an
 
 <https://bio.tools/fasta_to_phylip> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1093/nar/gkw343>,
@@ -194849,7 +194479,7 @@ OBJECTIVE:Closed-loop experiments provide unique insights into brain dynamics an
     biotools:primaryContact "Galaxy Support Team" .
 
 <https://bio.tools/fastachar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0632,
         edam:topic_0637,
@@ -194868,18 +194498,18 @@ OBJECTIVE:Closed-loop experiments provide unique insights into brain dynamics an
 
 <https://bio.tools/fastaextract> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0080,
@@ -194899,7 +194529,7 @@ OBJECTIVE:Closed-loop experiments provide unique insights into brain dynamics an
     biotools:primaryContact "Galaxy Support Team" .
 
 <https://bio.tools/fastafilecomparer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080 ;
@@ -194912,18 +194542,18 @@ OBJECTIVE:Closed-loop experiments provide unique insights into brain dynamics an
 
 <https://bio.tools/fastafrombed> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ] ;
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_3003" ;
+            sc:name "Annotation track" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3168 ;
@@ -194940,13 +194570,13 @@ OBJECTIVE:Closed-loop experiments provide unique insights into brain dynamics an
     biotools:primaryContact "Galaxy Support Team" .
 
 <https://bio.tools/fastafs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0659,
         edam:topic_2885,
         edam:topic_3168 ;
-    sc:citation <https://doi.org/10.1101/2020.11.11.377689> ;
+    sc:citation <https://doi.org/10.1186/s12859-021-04455-3> ;
     sc:description """FASTAFS is toolkit for file system virtualisation of random access compressed FASTA files.
 Although it is uncommon, the FASTAFS format denotes the index (a typical header) after the data. The reason for this location is that most metadata can only be known after converting the entire FASTA file to FASTAFS. For instance, the number of nucleotides encoded within 2bit data, the number of N-characters or the checksum.""" ;
     sc:featureList edam:operation_0335,
@@ -194958,7 +194588,7 @@ Although it is uncommon, the FASTAFS format denotes the index (a typical header)
     sc:url "https://github.com/yhoogstrate/fastafs" .
 
 <https://bio.tools/fastagrep> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654 ;
@@ -194970,8 +194600,22 @@ Although it is uncommon, the FASTAFS format denotes the index (a typical header)
     sc:softwareVersion "2.0" ;
     sc:url "http://bioinfo.ut.ee/?page_id=167" .
 
+<https://bio.tools/fastani> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0199,
+        edam:topic_3301 ;
+    sc:description "FastANI is developed for fast alignment-free computation of whole-genome Average Nucleotide Identity (ANI). ANI is defined as mean nucleotide identity of orthologous gene pairs shared between two microbial genomes. FastANI supports pairwise comparison of both complete and draft genome assemblies." ;
+    sc:isAccessibleForFree true ;
+    sc:license "Apache-2.0" ;
+    sc:name "FastANI" ;
+    sc:operatingSystem "Linux",
+        "Mac" ;
+    sc:url "https://github.com/ParBLiSS/FastANI" ;
+    biotools:primaryContact "Parallel and Sequential Bioinformatics Libraries for High Throughput Sequences" .
+
 <https://bio.tools/fastbaps> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0625,
@@ -194994,7 +194638,7 @@ Although it is uncommon, the FASTAFS format denotes the index (a typical header)
     biotools:primaryContact <https://orcid.org/0000-0003-4397-2224> .
 
 <https://bio.tools/fastbma> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -195013,7 +194657,7 @@ Although it is uncommon, the FASTAFS format denotes the index (a typical header)
     biotools:primaryContact "Ka Yee Yeung" .
 
 <https://bio.tools/fastbmd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0769,
@@ -195026,8 +194670,20 @@ Although it is uncommon, the FASTAFS format denotes the index (a typical header)
     sc:name "FastBMD" ;
     sc:url "http://www.fastbmd.ca" .
 
+<https://bio.tools/fastcodeml> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_3293 ;
+    sc:citation <https://doi.org/10.1093/bioinformatics/btt760> ;
+    sc:description "FastCodeML is a collection of optimization strategies for fast detection of positive selection on phylogenetic trees." ;
+    sc:isAccessibleForFree true ;
+    sc:license "Other" ;
+    sc:name "FastCodeML" ;
+    sc:url "https://gitlab.sib.swiss/phylo/fastcodeml" ;
+    biotools:primaryContact "Nicolas Salamin" .
+
 <https://bio.tools/fastcontact> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0602,
@@ -195050,8 +194706,42 @@ Although it is uncommon, the FASTAFS format denotes the index (a typical header)
     sc:url "http://structure.pitt.edu/servers/fastcontact/" ;
     biotools:primaryContact "Camacho CJ" .
 
+<https://bio.tools/fastcore> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:citation <https://doi.org/10.1371/journal.pcbi.1003424> ;
+    sc:description "Fast Reconstruction of Compact Context-Specific Metabolic Network Models" ;
+    sc:isAccessibleForFree true ;
+    sc:license "Freeware" ;
+    sc:name "FastCore" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://github.com/migp11/pyfastcore> ;
+    sc:url "https://github.com/migp11/pyfastcore" .
+
+<https://bio.tools/fastdrh> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0209,
+        edam:topic_2275 ;
+    sc:citation <https://doi.org/10.1093/BIB/BBAC201>,
+        "pubmed:35580866" ;
+    sc:description "A webserver to predict and analyze protein-ligand complexes based on molecular docking and MM/PB(GB)SA computation." ;
+    sc:featureList edam:operation_0321,
+        edam:operation_0478,
+        edam:operation_3454,
+        edam:operation_4009 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Other" ;
+    sc:name "fastDRH" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://cadd.zju.edu.cn/fastdrh/" .
+
 <https://bio.tools/fastep> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1109/TCBB.2013.2297924> ;
@@ -195067,7 +194757,7 @@ Although it is uncommon, the FASTAFS format denotes the index (a typical header)
     biotools:primaryContact "Matteo Comin" .
 
 <https://bio.tools/fasteprr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2885 ;
     sc:citation <https://doi.org/10.1534/g3.116.028233>,
@@ -195084,7 +194774,7 @@ Although it is uncommon, the FASTAFS format denotes the index (a typical header)
     sc:url "http://www.picb.ac.cn/evolgen/softwares/FastEPRR.html" .
 
 <https://bio.tools/faster-roc-auc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269 ;
     sc:description "Fast calculation of AUC of an ROC for binary classification problems, written in C++." ;
@@ -195098,7 +194788,7 @@ Although it is uncommon, the FASTAFS format denotes the index (a typical header)
     biotools:primaryContact "Enric Junque de Fortuny" .
 
 <https://bio.tools/fastfield> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_3379 ;
     sc:citation <https://doi.org/10.1016/j.neuroimage.2020.117330>,
@@ -195109,7 +194799,7 @@ Although it is uncommon, the FASTAFS format denotes the index (a typical header)
     sc:url "https://github.com/luxneuroimage/FastField" .
 
 <https://bio.tools/fastgenogam> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0749,
@@ -195129,8 +194819,28 @@ Although it is uncommon, the FASTAFS format denotes the index (a typical header)
     sc:url "https://github.com/gstricker/fastGenoGAM" ;
     biotools:primaryContact "Julien Gagneur" .
 
+<https://bio.tools/fastgrow> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0209,
+        edam:topic_2275,
+        edam:topic_3299 ;
+    sc:citation <https://doi.org/10.1007/S10822-022-00469-Y>,
+        "pubmed:35989379" ;
+    sc:description "FastGrow is a fast fragment growing approach using a shape-based algorithm. It also features pharmacophore-like constraints, geometry optimization using JAMDA, and built-in ensemble flexibility" ;
+    sc:featureList edam:operation_0478,
+        edam:operation_2421,
+        edam:operation_4009 ;
+    sc:isAccessibleForFree true ;
+    sc:license "BSD-3-Clause" ;
+    sc:name "FastGrow" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://fastgrow.plus/" .
+
 <https://bio.tools/fastgwa-glmm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3337,
@@ -195146,7 +194856,7 @@ fastGWA-GLMM data portal.""" ;
     sc:url "http://fastgwa.info/ukbimpbin" .
 
 <https://bio.tools/fasthmm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -195164,7 +194874,7 @@ fastGWA-GLMM data portal.""" ;
     sc:url "http://microbesonline.org/fasthmm/" .
 
 <https://bio.tools/fastism> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0199,
@@ -195180,18 +194890,18 @@ fastGWA-GLMM data portal.""" ;
 
 <https://bio.tools/fastliquidassociation> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0928" ;
-            sc:name "Gene expression profile" ;
-            sc:sameAs "http://edamontology.org/data_0928" ] ;
+            sc:additionalType "http://edamontology.org/data_0928" ;
+            sc:encodingFormat "http://edamontology.org/format_2058" ;
+            sc:name "Gene expression profile" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1772" ;
-            sc:name "Score" ;
-            sc:sameAs "http://edamontology.org/data_1772" ],
+            sc:additionalType "http://edamontology.org/data_1772" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Score" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2353" ;
-            sc:name "Ontology data" ;
-            sc:sameAs "http://edamontology.org/data_2353" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2353" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Ontology data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -195211,8 +194921,18 @@ fastGWA-GLMM data portal.""" ;
     sc:url "http://bioconductor.org/packages/release/bioc/html/fastLiquidAssociation.html" ;
     biotools:primaryContact "Tina Gunderson" .
 
+<https://bio.tools/fastlsa> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Suite" ;
+    sc:applicationSubCategory edam:topic_2269 ;
+    sc:citation <https://doi.org/10.1186/1471-2164-14-S1-S3> ;
+    sc:description "The fastLSAsoftware package expands the boundaries of LSA allowing analysis on datasets with millions of co-varying time series. Mapping metadata onto force-directed graphs derived from FAST LSA allows investigators to view correlated cliques and explore previously unrecognized network relationships." ;
+    sc:name "fastLSA" ;
+    sc:url "https://github.com/hallamlab/fastLSA" ;
+    biotools:primaryContact "Steven J Hallam" .
+
 <https://bio.tools/fastm_api_ebi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1074/mcp.M100004-MCP200> ;
@@ -195228,19 +194948,18 @@ fastGWA-GLMM data portal.""" ;
 
 <https://bio.tools/fastm_ebi> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:name "Protein sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0857" ;
-            sc:name "Sequence search results" ;
-            sc:sameAs "http://edamontology.org/data_0857" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0857" ;
+            sc:name "Sequence search results" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:author "Bill Pearson",
-        "Web Production" ;
-    sc:citation <https://doi.org/10.1093/nar/gkv1352> ;
+        "Job Dispatcher" ;
+    sc:citation <https://doi.org/10.1093/nar/gkac240>,
+        <https://doi.org/10.1093/nar/gkv1352> ;
     sc:description "Sequence similarity search with peptide fragment searches using the FASTF, FASTM or FASTS programs from the FASTA suite." ;
     sc:featureList edam:operation_0346 ;
     sc:name "FASTM (EBI)" ;
@@ -195253,10 +194972,10 @@ fastGWA-GLMM data portal.""" ;
         <http://www.ebi.ac.uk/about/terms-of-use> ;
     sc:softwareVersion "1" ;
     sc:url "http://www.ebi.ac.uk/Tools/sss/fastm/" ;
-    biotools:primaryContact "Web Production" .
+    biotools:primaryContact "Job Dispatcher Team" .
 
 <https://bio.tools/fastmap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_2885,
@@ -195273,14 +194992,14 @@ fastGWA-GLMM data portal.""" ;
 
 <https://bio.tools/fastme> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1423" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0872" ;
-            sc:name "Phylogenetic tree" ;
-            sc:sameAs "http://edamontology.org/data_0872" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0872" ;
+            sc:encodingFormat "http://edamontology.org/format_1910" ;
+            sc:name "Phylogenetic tree" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0091,
@@ -195302,7 +195021,7 @@ fastGWA-GLMM data portal.""" ;
     biotools:primaryContact "Vincent Lefort" .
 
 <https://bio.tools/fastml> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0084,
@@ -195325,7 +195044,7 @@ fastGWA-GLMM data portal.""" ;
     biotools:primaryContact "FastML Support" .
 
 <https://bio.tools/fastmlst> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3293,
@@ -195341,7 +195060,7 @@ fastGWA-GLMM data portal.""" ;
     sc:url "https://github.com/EnzoAndree/FastMLST" .
 
 <https://bio.tools/fastmm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0602,
@@ -195359,7 +195078,7 @@ fastGWA-GLMM data portal.""" ;
     sc:url "https://github.com/GonghuaLi/FastMM" .
 
 <https://bio.tools/fastmulrfs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0194,
         edam:topic_0623,
@@ -195375,7 +195094,7 @@ fastGWA-GLMM data portal.""" ;
     sc:url "https://github.com/ekmolloy/fastmulrfs" .
 
 <https://bio.tools/fastool> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:description "Read huge FastQ and FastA files (both normal and gzipped) an demanipulate them." ;
@@ -195387,14 +195106,44 @@ fastGWA-GLMM data portal.""" ;
     sc:url "https://github.com/fstrozzi/Fastool" .
 
 <https://bio.tools/fastp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0080,
+        edam:topic_0632 ;
+    sc:citation <https://doi.org/10.1093/bioinformatics/bty560> ;
     sc:description "A tool designed to provide fast all-in-one preprocessing for FastQ files. This tool is developed in C++ with multithreading supported to afford high performance." ;
+    sc:featureList edam:operation_3187,
+        edam:operation_3192 ;
+    sc:license "MIT" ;
     sc:name "fastp" ;
-    sc:softwareVersion "v0.20.1" ;
+    sc:softwareVersion "v0.23.2" ;
     sc:url "https://github.com/OpenGene/fastp" .
 
+<https://bio.tools/fastpcr> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Desktop application",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0632,
+        edam:topic_0749,
+        edam:topic_2885,
+        edam:topic_3168,
+        edam:topic_3519 ;
+    sc:citation <https://doi.org/10.1007/978-1-0716-1799-1_16>,
+        "pubmed:34773626" ;
+    sc:description "FastPCR is an integrated tool for PCR primers or probe design, in silico PCR, oligonucleotide assembly and analyses, alignment and repeat searching" ;
+    sc:featureList edam:operation_0307,
+        edam:operation_0308,
+        edam:operation_0309,
+        edam:operation_0346,
+        edam:operation_3196 ;
+    sc:isAccessibleForFree false ;
+    sc:name "FASTPCR" ;
+    sc:operatingSystem "Windows" ;
+    sc:softwareHelp <https://primerdigital.com/fastpcr/> ;
+    sc:url "https://primerdigital.com/fastpcr.html" .
+
 <https://bio.tools/fastpg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3170,
@@ -195407,7 +195156,7 @@ fastGWA-GLMM data portal.""" ;
     sc:url "https://github.com/sararselitsky/FastPG" .
 
 <https://bio.tools/fastphase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3056 ;
     sc:citation <https://doi.org/10.1086/502802> ;
@@ -195422,7 +195171,7 @@ fastGWA-GLMM data portal.""" ;
     sc:url "http://scheet.org/software.html" .
 
 <https://bio.tools/fastproject> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3170 ;
@@ -195442,14 +195191,14 @@ fastGWA-GLMM data portal.""" ;
 
 <https://bio.tools/fastq_groomer_parallel> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btq281>,
@@ -195467,7 +195216,7 @@ fastGWA-GLMM data portal.""" ;
     biotools:primaryContact "Galaxy Support Team" .
 
 <https://bio.tools/fastq_screen> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3308 ;
@@ -195485,14 +195234,14 @@ fastGWA-GLMM data portal.""" ;
 
 <https://bio.tools/fastqc> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0848" ;
-            sc:name "Raw sequence" ;
-            sc:sameAs "http://edamontology.org/data_0848" ] ;
+            sc:additionalType "http://edamontology.org/data_0848" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
+            sc:name "Raw sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2955" ;
-            sc:name "Sequence report" ;
-            sc:sameAs "http://edamontology.org/data_2955" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2955" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Sequence report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -195513,18 +195262,18 @@ fastGWA-GLMM data portal.""" ;
 
 <https://bio.tools/fastqc_toolshed> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3168,
@@ -195542,8 +195291,30 @@ fastGWA-GLMM data portal.""" ;
     sc:url "https://www.bioinformatics.babraham.ac.uk/projects/fastqc/" ;
     biotools:primaryContact "Galaxy Support Team" .
 
+<https://bio.tools/fastqcls> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0091,
+        edam:topic_0196,
+        edam:topic_3168,
+        edam:topic_3382,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAB696>,
+        "pubmed:34623374" ;
+    sc:description "A FASTQ Compressor for Long-read Sequencing via read reordering using a novel scoring model." ;
+    sc:featureList edam:operation_0524,
+        edam:operation_2409,
+        edam:operation_3219 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "FastqCLS" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/krlucete/FastqCLS" .
+
 <https://bio.tools/fastqins> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0749,
@@ -195562,7 +195333,7 @@ fastGWA-GLMM data portal.""" ;
     sc:url "https://github.com/CRG-CNAG/fastqins" .
 
 <https://bio.tools/fastquick> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0622,
         edam:topic_2885,
@@ -195578,7 +195349,7 @@ fastGWA-GLMM data portal.""" ;
     sc:url "https://github.com/Griffan/FASTQuick" .
 
 <https://bio.tools/fastqvalidator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3572 ;
@@ -195593,7 +195364,7 @@ fastGWA-GLMM data portal.""" ;
     biotools:primaryContact "The Center for Statistical Genetics at the University of Michigan School of Public Health" .
 
 <https://bio.tools/fastqz> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3168 ;
@@ -195612,7 +195383,7 @@ fastGWA-GLMM data portal.""" ;
     biotools:primaryContact <http://orcid.org/0000-0002-6447-4112> .
 
 <https://bio.tools/fastr3d> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0097,
@@ -195634,7 +195405,7 @@ fastGWA-GLMM data portal.""" ;
     biotools:primaryContact "Dr. Chin Lung Lu" .
 
 <https://bio.tools/fastral> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0194,
@@ -195653,8 +195424,25 @@ FASTRAL is a novel approach for running ASTRAL, a widely used and popular specie
     sc:name "FASTRAL" ;
     sc:url "https://github.com/PayamDiba/FASTRAL" .
 
+<https://bio.tools/fastremap> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_0196,
+        edam:topic_3382 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC554>,
+        "pubmed:35976109" ;
+    sc:description "FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool" ;
+    sc:featureList edam:operation_0525,
+        edam:operation_3198 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "FastRemap" ;
+    sc:operatingSystem "Linux" ;
+    sc:url "http://github.com/CMU-SAFARI/FastRemap" .
+
 <https://bio.tools/fastscop> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -195676,7 +195464,7 @@ FASTRAL is a novel approach for running ASTRAL, a widely used and popular specie
     biotools:primaryContact "Dr. Jinn-Moon Yang" .
 
 <https://bio.tools/fastseg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -195698,7 +195486,7 @@ FASTRAL is a novel approach for running ASTRAL, a widely used and popular specie
     biotools:primaryContact <http://orcid.org/0000-0003-2861-5552> .
 
 <https://bio.tools/fastsimcoal2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0625,
@@ -195718,7 +195506,7 @@ FASTRAL is a novel approach for running ASTRAL, a widely used and popular specie
     sc:url "http://cmpg.unibe.ch/software/fastsimcoal2/" .
 
 <https://bio.tools/fastsk> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3169,
@@ -195734,7 +195522,7 @@ FASTRAL is a novel approach for running ASTRAL, a widely used and popular specie
     sc:url "https://github.com/QData/FastSK" .
 
 <https://bio.tools/fastskat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3517 ;
@@ -195751,7 +195539,7 @@ FASTRAL is a novel approach for running ASTRAL, a widely used and popular specie
     biotools:primaryContact "Thomas Lumley" .
 
 <https://bio.tools/fastsnp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_1775,
@@ -195765,7 +195553,7 @@ FASTRAL is a novel approach for running ASTRAL, a widely used and popular specie
     sc:url "http://fastsnp.ibms.sinica.edu.tw" .
 
 <https://bio.tools/faststructure> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3056 ;
     sc:citation <https://doi.org/10.1534/genetics.114.164350> ;
@@ -195778,7 +195566,7 @@ FASTRAL is a novel approach for running ASTRAL, a widely used and popular specie
     sc:url "http://rajanil.github.io/fastStructure/" .
 
 <https://bio.tools/fasttargetpred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0140,
         edam:topic_0154,
@@ -195796,7 +195584,7 @@ FASTRAL is a novel approach for running ASTRAL, a widely used and popular specie
     sc:url "https://github.com/ludovicchaput/FastTargetPred" .
 
 <https://bio.tools/fasttrack> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0769,
@@ -195819,7 +195607,7 @@ Tracking objects in video recording can be tedious. Existing software are expens
     sc:url "http://www.fasttrack.sh" .
 
 <https://bio.tools/fasttree> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3293 ;
@@ -195835,7 +195623,7 @@ Tracking objects in video recording can be tedious. Existing software are expens
     sc:url "http://www.microbesonline.org/fasttree/" .
 
 <https://bio.tools/fasturec> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3293 ;
     sc:citation <https://doi.org/10.1007/978-3-642-30191-9_11> ;
@@ -195847,8 +195635,21 @@ Tracking objects in video recording can be tedious. Existing software are expens
     sc:softwareVersion "20150126" ;
     sc:url "http://bioputer.mimuw.edu.pl/gorecki/fasturec/" .
 
+<https://bio.tools/fastutils> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_3572 ;
+    sc:description "Fastutils is a light toolkit for parsing, manipulating and analysis of FASTA and FASTQ files." ;
+    sc:featureList edam:operation_0335,
+        edam:operation_2403 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "Fastutils" ;
+    sc:url "https://github.com/haghshenas/fastutils" ;
+    biotools:primaryContact "Ehsan Haghshenas" .
+
 <https://bio.tools/fastv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3168,
         edam:topic_3174,
@@ -195865,8 +195666,28 @@ Tracking objects in video recording can be tedious. Existing software are expens
     sc:name "fastv" ;
     sc:url "https://github.com/OpenGene/fastv" .
 
+<https://bio.tools/fastvifi> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Workflow" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0622,
+        edam:topic_3170,
+        edam:topic_3324,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.1093/NARGAB/LQAC032>,
+        "pmcid:PMC9041341",
+        "pubmed:35493723" ;
+    sc:description "A software to detect viral infection and integration sites for different viruses." ;
+    sc:featureList edam:operation_0310,
+        edam:operation_2436,
+        edam:operation_3695 ;
+    sc:license "GPL-3.0" ;
+    sc:name "FastViFi" ;
+    sc:url "https://github.com/sara-javadzadeh/FastViFi" .
+
 <https://bio.tools/fastx-toolkit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
@@ -195883,15 +195704,39 @@ Tracking objects in video recording can be tedious. Existing software are expens
     sc:url "http://hannonlab.cshl.edu/fastx_toolkit/" .
 
 <https://bio.tools/fastxtend> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:description "fastxtend is an extension of FASTX-Toolkit package. It provides four commands line tools for Short-Reads FASTA/FASTQ files preprocessing." ;
     sc:name "fastxtend" ;
     sc:url "http://www.genoscope.cns.fr/externe/fastxtend/" .
 
+<https://bio.tools/fat-ptm> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0121,
+        edam:topic_0601,
+        edam:topic_0602,
+        edam:topic_0780,
+        edam:topic_3407 ;
+    sc:citation <https://doi.org/10.1007/978-1-0716-2317-6_7>,
+        "pubmed:35696079" ;
+    sc:description "A Functional Analysis Tools for Post-translational Modifications (FAT-PTM) database, which supports data from publicly available proteomic analyses encompassing eight different types of PTMs and over 49,000 PTM sites." ;
+    sc:featureList edam:operation_0417,
+        edam:operation_3645,
+        edam:operation_3929 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "FAT-PTM" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://bioinformatics.cse.unr.edu/fat-ptm/help/> ;
+    sc:url "http://bioinformatics.cse.unr.edu/fat-ptm" .
+
 <https://bio.tools/fatcat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -195918,14 +195763,14 @@ Tracking objects in video recording can be tedious. Existing software are expens
 
 <https://bio.tools/fateid> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Gene expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ] ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "Gene expression data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1713" ;
-            sc:name "Fate map" ;
-            sc:sameAs "http://edamontology.org/data_1713" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1713" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Fate map" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3053,
@@ -195948,7 +195793,7 @@ Tracking objects in video recording can be tedious. Existing software are expens
     biotools:primaryContact "Dominic Grün" .
 
 <https://bio.tools/fathmm-indel> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_1775,
@@ -195964,7 +195809,7 @@ Tracking objects in video recording can be tedious. Existing software are expens
     biotools:primaryContact "Michael Ferlaino" .
 
 <https://bio.tools/fatigoplus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0166,
@@ -195983,13 +195828,13 @@ Tracking objects in video recording can be tedious. Existing software are expens
     sc:url "http://www.fatigo.org/" .
 
 <https://bio.tools/fatotwobit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "Convert DNA from fasta to 2bit format" ;
     sc:name "fatotwobit" ;
     sc:url "https://bioconda.github.io/recipes/ucsc-fatotwobit/README.html" .
 
 <https://bio.tools/fauxcurrence> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_0780,
@@ -196003,13 +195848,51 @@ Tracking objects in video recording can be tedious. Existing software are expens
     biotools:primaryContact <https://orcid.org/0000-0002-1213-1169> .
 
 <https://bio.tools/favicov> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "FaviCov is a comprehensive resource for functionally relevant SARS-CoV genetic variants. The resource provides a searchable interface for genomic variants and corresponding variant annotations." ;
     sc:name "FaviCoV" ;
     sc:url "https://clingen.igib.res.in/favicov/" .
 
+<https://bio.tools/favseq> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0769,
+        edam:topic_3170,
+        edam:topic_3474,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.1101/2022.01.06.474932> ;
+    sc:description "Machine Learning-Assisted Identification of Factors Contributing to the Technical Variability Between Bulk and Single-Cell RNA-Seq Experiments." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_3557,
+        edam:operation_3659,
+        edam:operation_3680,
+        edam:operation_3800 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "FAVSeq" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/slipnitskaya/FAVSeq" .
+
+<https://bio.tools/fazseg> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Desktop application" ;
+    sc:applicationSubCategory edam:topic_3452 ;
+    sc:citation <https://doi.org/10.2147/OPTH.S346145>,
+        "pmcid:PMC8714006",
+        "pubmed:34992342" ;
+    sc:description "A tool to validate newly developed automated segmentation algorithms." ;
+    sc:featureList edam:operation_3435,
+        edam:operation_3443,
+        edam:operation_3799 ;
+    sc:isAccessibleForFree true ;
+    sc:name "FAZSeg" ;
+    sc:url "https://github.com/VIEKASH2001/FAZSeg" .
+
 <https://bio.tools/fba> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0166,
@@ -196031,7 +195914,7 @@ Tracking objects in video recording can be tedious. Existing software are expens
     biotools:primaryContact <https://orcid.org/0000-0002-1615-0391> .
 
 <https://bio.tools/fbat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3517 ;
     sc:citation <https://doi.org/10.1101/815290>,
@@ -196045,8 +195928,26 @@ Tracking objects in video recording can be tedious. Existing software are expens
     sc:url "https://sites.google.com/view/fbat-web-page" ;
     biotools:primaryContact "Nan Laird" .
 
+<https://bio.tools/fbmsnet> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_3379,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1109/TBME.2022.3193277>,
+        "pubmed:35867371" ;
+    sc:description "A Filter-Bank Multi-Scale Convolutional Neural Network for EEG-Based Motor Imagery Decoding." ;
+    sc:featureList edam:operation_3695 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "FBMSNet" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/Want2Vanish/FBMSNet" .
+
 <https://bio.tools/fc-nirs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3334,
         edam:topic_3384 ;
@@ -196064,7 +195965,7 @@ Tracking objects in video recording can be tedious. Existing software are expens
     biotools:primaryContact "Haijing Niu" .
 
 <https://bio.tools/fc-r2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0659,
@@ -196083,7 +195984,7 @@ Tracking objects in video recording can be tedious. Existing software are expens
     sc:url "https://github.com/eddieimada/fcr2" .
 
 <https://bio.tools/fc_analysis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0092 ;
     sc:citation <https://doi.org/10.1186/s12859-018-2265-4> ;
@@ -196095,7 +195996,7 @@ Tracking objects in video recording can be tedious. Existing software are expens
     biotools:primaryContact "Simone Dinarelli" .
 
 <https://bio.tools/fccac> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3168,
@@ -196116,7 +196017,7 @@ Tracking objects in video recording can be tedious. Existing software are expens
     biotools:primaryContact <http://orcid.org/0000-0003-1959-8199> .
 
 <https://bio.tools/fci> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -196135,7 +196036,7 @@ Tracking objects in video recording can be tedious. Existing software are expens
     biotools:primaryContact "Shaojun Tang" .
 
 <https://bio.tools/fcircsec> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_0659,
@@ -196155,14 +196056,13 @@ Tracking objects in video recording can be tedious. Existing software are expens
 
 <https://bio.tools/fcite> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1187" ;
-            sc:name "PubMed ID" ;
-            sc:sameAs "http://edamontology.org/data_1187" ] ;
+            sc:additionalType "http://edamontology.org/data_1187" ;
+            sc:name "PubMed ID" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0970" ;
-            sc:name "Citation" ;
-            sc:sameAs "http://edamontology.org/data_0970" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0970" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Citation" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0605,
@@ -196185,8 +196085,45 @@ In 2021, the tool stats are calculated based on over 34 million of PMIDs with ov
         <http://fcite.org/stats.html> ;
     sc:url "http://fcite.org" .
 
+<https://bio.tools/fclqc> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_3168 ;
+    sc:citation <https://doi.org/10.1186/S12859-021-04516-7>,
+        "pmcid:PMC8686598",
+        "pubmed:34930110" ;
+    sc:description "Fast and concurrent lossless quality scores compressor." ;
+    sc:featureList edam:operation_3359,
+        edam:operation_3454 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "FCLQC" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/Minhyeok01/FCLQC" .
+
+<https://bio.tools/fcngru> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0204,
+        edam:topic_0749,
+        edam:topic_3474,
+        edam:topic_3518 ;
+    sc:citation <https://doi.org/10.1109/JBHI.2021.3117616>,
+        "pubmed:34613923" ;
+    sc:description "Locating Transcription Factor Binding Sites by combing Fully Convolutional Neural Network with Gated Recurrent Unit." ;
+    sc:featureList edam:operation_0445,
+        edam:operation_3659 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "FCNGRU" ;
+    sc:operatingSystem "Linux",
+        "Mac" ;
+    sc:url "https://github.com/wangguoguoa/FCNGRU" .
+
 <https://bio.tools/fcscan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0622,
@@ -196204,7 +196141,7 @@ In 2021, the tool stats are calculated based on over 34 million of PMIDs with ov
     sc:url "https://bioconductor.org/packages/fcScan" .
 
 <https://bio.tools/fdce> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0203,
@@ -196227,7 +196164,7 @@ Assessing Consistency Across Functional Screening Datasets in Cancer Cells.""" ;
     sc:url "https://lccl.shinyapps.io/FDCE/" .
 
 <https://bio.tools/fdetect> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2814 ;
     sc:citation <https://doi.org/10.1186/s12859-017-1995-z> ;
@@ -196242,7 +196179,7 @@ Assessing Consistency Across Functional Screening Datasets in Cancer Cells.""" ;
     biotools:primaryContact "Lukasz Kurgan" .
 
 <https://bio.tools/fdk-conebeam-ct-reconstruction-multithread> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3306,
         edam:topic_3344,
@@ -196258,7 +196195,7 @@ Assessing Consistency Across Functional Screening Datasets in Cancer Cells.""" ;
     biotools:primaryContact "Rene Willemink" .
 
 <https://bio.tools/fdmd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0176,
@@ -196281,8 +196218,21 @@ An efficient method to locate binding sites : Fragment Dissolved Molecular Dynam
     sc:name "fdMD" ;
     sc:url "https://github.com/DrugDesignUBUJA/fdMD" .
 
+<https://bio.tools/fdr4> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:description "This server FDR4 is meant for the prediction of binding affinity of peptide binders in an antigenic sequence for a MHC class II allele HLA-DRB1*0401." ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "fdr4" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/fdr4/index.html> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/fdr4/index.html" .
+
 <https://bio.tools/fdrame> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3518 ;
@@ -196300,8 +196250,30 @@ An efficient method to locate binding sites : Fragment Dissolved Molecular Dynam
     sc:url "http://bioconductor.org/packages/release/bioc/html/fdrame.html" ;
     biotools:primaryContact "Effi Kenigsberg" .
 
+<https://bio.tools/fdrci> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_2229,
+        edam:topic_2640,
+        edam:topic_3379 ;
+    sc:citation <https://doi.org/10.1093/BIOADV/VBAC047>,
+        "pmcid:PMC9210923",
+        "pubmed:35747247" ;
+    sc:description "FDR confidence interval selection and adjustment for large-scale hypothesis testing." ;
+    sc:featureList edam:operation_2238,
+        edam:operation_3196 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Artistic-2.0" ;
+    sc:name "fdrci" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://cran.r-project.org/web/packages/fdrci/fdrci.pdf> ;
+    sc:url "https://cran.r-project.org/web/packages/fdrci/index.html" .
+
 <https://bio.tools/fdrestimation> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0605,
         edam:topic_2269 ;
@@ -196320,7 +196292,7 @@ An efficient method to locate binding sites : Fragment Dissolved Molecular Dynam
     sc:url "https://cran.r-project.org/package=FDRestimation" .
 
 <https://bio.tools/fds> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0204,
@@ -196340,7 +196312,7 @@ An efficient method to locate binding sites : Fragment Dissolved Molecular Dynam
     sc:url "http://www.cuilab.cn/fds/" .
 
 <https://bio.tools/fe2og> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0160,
@@ -196360,14 +196332,12 @@ An efficient method to locate binding sites : Fragment Dissolved Molecular Dynam
 
 <https://bio.tools/featcopy> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ] ;
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:name "Sequence features" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:name "Sequence features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0160 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -196397,7 +196367,7 @@ An efficient method to locate binding sites : Fragment Dissolved Molecular Dynam
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/featcopy.html" .
 
 <https://bio.tools/feather> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0176,
         edam:topic_2814 ;
@@ -196416,14 +196386,14 @@ An efficient method to locate binding sites : Fragment Dissolved Molecular Dynam
 
 <https://bio.tools/featmerge> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ] ;
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Sequence features" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Sequence features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -196455,7 +196425,7 @@ An efficient method to locate binding sites : Fragment Dissolved Molecular Dynam
     sc:url "http://www.bioinformatics.nl/cgi-bin/emboss/featmerge" .
 
 <https://bio.tools/featnotator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0622,
@@ -196474,18 +196444,15 @@ An efficient method to locate binding sites : Fragment Dissolved Molecular Dynam
 
 <https://bio.tools/featreport> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ],
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ] ;
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:name "Sequence features" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:name "Sequence features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0160 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -196515,7 +196482,7 @@ An efficient method to locate binding sites : Fragment Dissolved Molecular Dynam
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/featreport.html" .
 
 <https://bio.tools/feats> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3170,
@@ -196532,14 +196499,12 @@ An efficient method to locate binding sites : Fragment Dissolved Molecular Dynam
 
 <https://bio.tools/feattext> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ] ;
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:name "Sequence features" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:name "Sequence features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0160 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -196569,7 +196534,7 @@ An efficient method to locate binding sites : Fragment Dissolved Molecular Dynam
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/feattext.html" .
 
 <https://bio.tools/feature-based-retinal-image-registration> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -196586,7 +196551,7 @@ An efficient method to locate binding sites : Fragment Dissolved Molecular Dynam
     biotools:primaryContact "Li CHEN" .
 
 <https://bio.tools/feature-extraction> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0659,
@@ -196607,7 +196572,7 @@ As consequence of the various genomic sequencing projects, an increasing volume
     sc:url "https://github.com/Bonidia/FeatureExtraction_BiologicalSequences" .
 
 <https://bio.tools/feature-selection-interaction-information> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3070,
@@ -196627,7 +196592,7 @@ As consequence of the various genomic sequencing projects, an increasing volume
     biotools:primaryContact "Stefan Schroedl" .
 
 <https://bio.tools/feature-viewer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0601,
@@ -196645,7 +196610,7 @@ As consequence of the various genomic sequencing projects, an increasing volume
     sc:url "https://github.com/calipho-sib/feature-viewer" .
 
 <https://bio.tools/featurecounts> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:citation "pubmed:24227677" ;
@@ -196662,7 +196627,7 @@ As consequence of the various genomic sequencing projects, an increasing volume
         "Yang Liao" .
 
 <https://bio.tools/featureextract> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0654,
@@ -196684,7 +196649,7 @@ As consequence of the various genomic sequencing projects, an increasing volume
     biotools:primaryContact "FeatureExtract Support" .
 
 <https://bio.tools/featuremap3d> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0102,
@@ -196708,18 +196673,17 @@ As consequence of the various genomic sequencing projects, an increasing volume
 
 <https://bio.tools/featurep> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2955" ;
-            sc:name "Sequence report" ;
-            sc:sameAs "http://edamontology.org/data_2955" ],
+            sc:additionalType "http://edamontology.org/data_2955" ;
+            sc:name "Sequence report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Protein features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0160 ;
@@ -196737,7 +196701,7 @@ As consequence of the various genomic sequencing projects, an increasing volume
     biotools:primaryContact "Henrik Nielsen" .
 
 <https://bio.tools/featurescan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0203,
@@ -196754,8 +196718,63 @@ As consequence of the various genomic sequencing projects, an increasing volume
     sc:name "FeatureScan" ;
     sc:url "http://gnaweb.gbf.de/cgi-bin/FeatureScan/FeatureScan.pl" .
 
+<https://bio.tools/fec> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0081,
+        edam:topic_0196,
+        edam:topic_0769 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC565>,
+        "pubmed:35977383" ;
+    sc:description "Fec is a error correction tool based on two-rounds overlapping and caching." ;
+    sc:featureList edam:operation_0310,
+        edam:operation_3198 ;
+    sc:license "Not licensed" ;
+    sc:name "Fec" ;
+    sc:operatingSystem "Linux" ;
+    sc:url "https://github.com/zhangjuncsu/Fec.<h4" .
+
+<https://bio.tools/feda> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0621,
+        edam:topic_0821,
+        edam:topic_3071 ;
+    sc:citation <https://doi.org/10.1093/DATABASE/BAAB060>,
+        "pmcid:PMC8502015",
+        "pubmed:34626475" ;
+    sc:description "A web application gathering information about food enzyme preparations available on the European market." ;
+    sc:featureList edam:operation_2421,
+        edam:operation_2422,
+        edam:operation_3907 ;
+    sc:isAccessibleForFree true ;
+    sc:name "FEDA" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://feda.sciensano.be" .
+
+<https://bio.tools/feednet> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0634,
+        edam:topic_2640,
+        edam:topic_3382,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1088/1361-6560/AC8594>,
+        "pubmed:35905732" ;
+    sc:description "A feature enhanced encoder-decoder LSTM network for nuclei instance segmentation for histopathological diagnosis." ;
+    sc:featureList edam:operation_3927 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "FEEDNet" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/CandleLabAI/FEEDNet" .
+
 <https://bio.tools/feedr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_3299 ;
@@ -196774,7 +196793,7 @@ As consequence of the various genomic sequencing projects, an increasing volume
     biotools:primaryContact <https://orcid.org/0000-0002-7690-8360> .
 
 <https://bio.tools/feelnc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_3170 ;
@@ -196796,7 +196815,7 @@ As consequence of the various genomic sequencing projects, an increasing volume
         "Valentin Wucher" .
 
 <https://bio.tools/feems> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_2269,
@@ -196812,7 +196831,7 @@ As consequence of the various genomic sequencing projects, an increasing volume
     sc:url "https://github.com/jhmarcus/feems" .
 
 <https://bio.tools/fegs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0623,
         edam:topic_3293,
@@ -196832,7 +196851,7 @@ As consequence of the various genomic sequencing projects, an increasing volume
     sc:url "https://sourceforge.net/projects/transcriptomeassembly/files/Feature%20Extraction/" .
 
 <https://bio.tools/fella> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3172 ;
     sc:citation <https://doi.org/10.1371/journal.pone.0189012> ;
@@ -196851,14 +196870,14 @@ As consequence of the various genomic sequencing projects, an increasing volume
 
 <https://bio.tools/fells> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:encodingFormat "http://edamontology.org/format_3603" ;
+            sc:name "Protein features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API",
         "Web application" ;
     sc:applicationSubCategory edam:topic_2814,
@@ -196880,7 +196899,7 @@ As consequence of the various genomic sequencing projects, an increasing volume
     biotools:primaryContact <http://orcid.org/0000-0003-4525-7793> .
 
 <https://bio.tools/fem> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3295 ;
@@ -196899,8 +196918,32 @@ As consequence of the various genomic sequencing projects, an increasing volume
     sc:url "http://bioconductor.org/packages/release/bioc/html/FEM.html" ;
     biotools:primaryContact "Zhen Yang" .
 
+<https://bio.tools/fem_cell_function> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0099,
+        edam:topic_0203,
+        edam:topic_2229,
+        edam:topic_3170,
+        edam:topic_3518 ;
+    sc:citation <https://doi.org/10.7717/PEERJ.12570>,
+        "pmcid:PMC8641482",
+        "pubmed:34909283" ;
+    sc:description "Mining biological meaning from cell level in single-cell RNA sequencing data." ;
+    sc:featureList edam:operation_0313,
+        edam:operation_2436,
+        edam:operation_3223,
+        edam:operation_3891 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "FEM" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/qingyunpkdd/single_cell_fem" .
+
 <https://bio.tools/femfuns> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3068,
@@ -196915,7 +196958,7 @@ As consequence of the various genomic sequencing projects, an increasing volume
     sc:url "https://github.com/meronvermaas/FEMfuns" .
 
 <https://bio.tools/femlab-models> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3315,
         edam:topic_3444,
@@ -196931,8 +196974,53 @@ As consequence of the various genomic sequencing projects, an increasing volume
     sc:url "https://www.mathworks.com/matlabcentral/fileexchange/36556-matlab-for-femlab-models" ;
     biotools:primaryContact "Rex Cheung" .
 
+<https://bio.tools/feprepare> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0209,
+        edam:topic_3318 ;
+    sc:citation <https://doi.org/10.1021/ACS.JCIM.1C00215>,
+        "pubmed:34519200" ;
+    sc:description "A Web-Based Tool for Automating the Setup of Relative Binding Free Energy Calculations." ;
+    sc:featureList edam:operation_0455,
+        edam:operation_2476,
+        edam:operation_4009 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "FEPrepare" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://feprepare.vi-seem.eu/Manual.pdf> ;
+    sc:url "https://feprepare.vi-seem.eu/" .
+
+<https://bio.tools/feps> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0601,
+        edam:topic_0749,
+        edam:topic_3474,
+        edam:topic_3510 ;
+    sc:citation <https://doi.org/10.1007/978-1-0716-2317-6_3>,
+        "pubmed:35696075" ;
+    sc:description "A Tool for Feature Extraction from Protein Sequence." ;
+    sc:featureList edam:operation_0267,
+        edam:operation_0303,
+        edam:operation_0417,
+        edam:operation_2422,
+        edam:operation_3937 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "FEPS" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/dukkakc/FEPS_CFS" .
+
 <https://bio.tools/fermats> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -196951,7 +197039,7 @@ As consequence of the various genomic sequencing projects, an increasing volume
     sc:url "https://github.com/GaoYa1122/FermatS" .
 
 <https://bio.tools/fermfoodb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -196969,7 +197057,7 @@ As consequence of the various genomic sequencing projects, an increasing volume
     sc:url "https://webs.iiitd.edu.in/raghava/fermfoodb/" .
 
 <https://bio.tools/ferrdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0634,
@@ -196985,8 +197073,28 @@ As consequence of the various genomic sequencing projects, an increasing volume
     sc:name "FerrDb" ;
     sc:url "http://www.zhounan.org/ferrdb" .
 
+<https://bio.tools/fertilityonline> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0199,
+        edam:topic_0769,
+        edam:topic_2830,
+        edam:topic_3500,
+        edam:topic_3574 ;
+    sc:citation <https://doi.org/10.1016/J.GPB.2021.08.010>,
+        "pubmed:34954426" ;
+    sc:description "A Straight Pipeline for Functional Gene Annotation and Disease Mutation Discovery" ;
+    sc:featureList edam:operation_2421,
+        edam:operation_3672 ;
+    sc:isAccessibleForFree true ;
+    sc:name "FertilityOnline" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://mcg.ustc.edu.cn/bsc/spermgenes2.0/index.html" .
+
 <https://bio.tools/festival> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_3068,
         edam:topic_3361,
@@ -197004,7 +197112,7 @@ As consequence of the various genomic sequencing projects, an increasing volume
     sc:url "https://accarniel.github.io/FESTIval/" .
 
 <https://bio.tools/fetal-dose> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3384,
         edam:topic_3452 ;
@@ -197017,14 +197125,14 @@ As consequence of the various genomic sequencing projects, an increasing volume
 
 <https://bio.tools/fetch-taxonomic-ranks> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0637,
         edam:topic_3077,
@@ -197043,7 +197151,7 @@ As consequence of the various genomic sequencing projects, an increasing volume
     biotools:primaryContact "Galaxy Support Team" .
 
 <https://bio.tools/fetchprodom> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0736 ;
     sc:citation <https://doi.org/10.1093/nar/26.1.323>,
@@ -197060,7 +197168,7 @@ As consequence of the various genomic sequencing projects, an increasing volume
     sc:url "http://prodom.prabi.fr/prodom/current/documentation/fetchProDom.html" .
 
 <https://bio.tools/few-shot_segmentation> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_3384,
@@ -197078,7 +197186,7 @@ PyTorch implementation of 'Squeeze and Excite' Guided Few Shot Segmentation of V
     sc:url "https://github.com/abhi4ssj/few-shot-segmentation" .
 
 <https://bio.tools/ff> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154 ;
     sc:citation "pubmed:15980587" ;
@@ -197091,7 +197199,7 @@ PyTorch implementation of 'Squeeze and Excite' Guided Few Shot Segmentation of V
     sc:url "http://cluster.physics.iisc.ernet.in/ff/" .
 
 <https://bio.tools/ffas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0082,
@@ -197113,7 +197221,7 @@ PyTorch implementation of 'Squeeze and Excite' Guided Few Shot Segmentation of V
     biotools:primaryContact "FFAS Support" .
 
 <https://bio.tools/ffbskat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_3321,
@@ -197134,7 +197242,7 @@ PyTorch implementation of 'Squeeze and Excite' Guided Few Shot Segmentation of V
         "N.M. Belonogova" .
 
 <https://bio.tools/ffd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3315,
         edam:topic_3382 ;
@@ -197147,7 +197255,7 @@ PyTorch implementation of 'Squeeze and Excite' Guided Few Shot Segmentation of V
     sc:url "https://github.com/mogvision/FFD" .
 
 <https://bio.tools/ffdcj-sim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622 ;
     sc:citation <https://doi.org/10.1186/s12859-018-2130-5> ;
@@ -197160,7 +197268,7 @@ PyTorch implementation of 'Squeeze and Excite' Guided Few Shot Segmentation of V
     biotools:primaryContact "Diego P. Rubert" .
 
 <https://bio.tools/ffea> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0130,
         edam:topic_2814 ;
@@ -197176,7 +197284,7 @@ PyTorch implementation of 'Squeeze and Excite' Guided Few Shot Segmentation of V
     biotools:primaryContact "Sarah A. Harris" .
 
 <https://bio.tools/ffged> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0749,
@@ -197201,8 +197309,32 @@ PyTorch implementation of 'Squeeze and Excite' Guided Few Shot Segmentation of V
     sc:url "http://bioinfo.townsend.yale.edu/" ;
     biotools:primaryContact "Jeffrey Townsend" .
 
+<https://bio.tools/ffmsres-mutp> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0634,
+        edam:topic_2885,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1093/BIB/BBAB530>,
+        "pmcid:PMC8769912",
+        "pubmed:34953462" ;
+    sc:description "Prediction of disease-associated nsSNPs by integrating multi-scale ResNet models with deep feature fusion." ;
+    sc:featureList edam:operation_0267,
+        edam:operation_0331,
+        edam:operation_3461 ;
+    sc:isAccessibleForFree true ;
+    sc:name "FFMSRes-MutP" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://csbio.njust.edu.cn/bioinf/ffmsresmutp/" .
+
 <https://bio.tools/ffparam> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Library" ;
     sc:applicationSubCategory edam:topic_0154,
@@ -197221,7 +197353,7 @@ PyTorch implementation of 'Squeeze and Excite' Guided Few Shot Segmentation of V
     sc:url "http://ffparam.umaryland.edu" .
 
 <https://bio.tools/ffpe> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3518,
@@ -197242,7 +197374,7 @@ PyTorch implementation of 'Squeeze and Excite' Guided Few Shot Segmentation of V
     biotools:primaryContact <http://orcid.org/0000-0003-2725-0694> .
 
 <https://bio.tools/ffpred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0089,
@@ -197262,8 +197394,22 @@ PyTorch implementation of 'Squeeze and Excite' Guided Few Shot Segmentation of V
     sc:url "http://bioinf.cs.ucl.ac.uk/ffpred/" ;
     biotools:primaryContact "pripred team" .
 
+<https://bio.tools/ffsd> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workbench" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_3361 ;
+    sc:citation <https://doi.org/10.1109/TNNLS.2022.3152732>,
+        "pubmed:35254994" ;
+    sc:description "Distilling a Powerful Student Model via Online Knowledge Distillation." ;
+    sc:featureList edam:operation_3359 ;
+    sc:license "Not licensed" ;
+    sc:name "FFSD" ;
+    sc:operatingSystem "Linux" ;
+    sc:url "https://github.com/SJLeo/FFSD" .
+
 <https://bio.tools/ffselect> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0625,
@@ -197278,7 +197424,7 @@ PyTorch implementation of 'Squeeze and Excite' Guided Few Shot Segmentation of V
     sc:url "https://github.com/NicholSchultz/FFselect" .
 
 <https://bio.tools/ffw> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0654,
@@ -197297,14 +197443,14 @@ PyTorch implementation of 'Squeeze and Excite' Guided Few Shot Segmentation of V
 
 <https://bio.tools/fgap> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0925" ;
-            sc:name "Sequence assembly" ;
-            sc:sameAs "http://edamontology.org/data_0925" ] ;
+            sc:additionalType "http://edamontology.org/data_0925" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence assembly" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0925" ;
-            sc:name "Sequence assembly" ;
-            sc:sameAs "http://edamontology.org/data_0925" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0925" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence assembly" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:author "Vitor C. Piro" ;
@@ -197321,14 +197467,14 @@ PyTorch implementation of 'Squeeze and Excite' Guided Few Shot Segmentation of V
     biotools:primaryContact "Vitor C. Piro" .
 
 <https://bio.tools/fgbio> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "fgbio is a command line toolkit for working with genomic and particularly next generation sequencing data." ;
     sc:name "fgbio" ;
     sc:softwareVersion "1.3.0" ;
     sc:url "http://fulcrumgenomics.github.io/fgbio/" .
 
 <https://bio.tools/fgdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0203,
@@ -197349,7 +197495,7 @@ PyTorch implementation of 'Squeeze and Excite' Guided Few Shot Segmentation of V
     biotools:primaryContact "FGDB Support" .
 
 <https://bio.tools/fgdb-glycan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0593,
         edam:topic_0769,
@@ -197367,7 +197513,7 @@ PyTorch implementation of 'Squeeze and Excite' Guided Few Shot Segmentation of V
     biotools:primaryContact "Chittibabu Guda" .
 
 <https://bio.tools/fgdp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0085,
         edam:topic_0622 ;
@@ -197383,7 +197529,7 @@ PyTorch implementation of 'Squeeze and Excite' Guided Few Shot Segmentation of V
     sc:url "http://bioinformatics.fccc.edu/software/OpenSource/FGDP/FGDP.shtml" .
 
 <https://bio.tools/fgenesh> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0114 ;
     sc:citation <https://doi.org/10.1186/gb-2006-7-s1-s10> ;
@@ -197393,7 +197539,7 @@ PyTorch implementation of 'Squeeze and Excite' Guided Few Shot Segmentation of V
     sc:url "http://nhjy.hzau.edu.cn/kech/swxxx/jakj/dianzi/Bioinf6/GeneFinding/GeneFinding2.htm" .
 
 <https://bio.tools/fgf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0102,
@@ -197411,14 +197557,12 @@ PyTorch implementation of 'Squeeze and Excite' Guided Few Shot Segmentation of V
 
 <https://bio.tools/fgmp> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0925" ;
-            sc:name "Sequence assembly" ;
-            sc:sameAs "http://edamontology.org/data_0925" ] ;
+            sc:additionalType "http://edamontology.org/data_0925" ;
+            sc:name "Sequence assembly" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3181" ;
-            sc:name "Sequence assembly report" ;
-            sc:sameAs "http://edamontology.org/data_3181" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3181" ;
+            sc:name "Sequence assembly report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0196,
@@ -197439,14 +197583,14 @@ PyTorch implementation of 'Squeeze and Excite' Guided Few Shot Segmentation of V
 
 <https://bio.tools/fgnet> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0842" ;
-            sc:name "Identifier" ;
-            sc:sameAs "http://edamontology.org/data_0842" ] ;
+            sc:additionalType "http://edamontology.org/data_0842" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Identifier" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0602 ;
@@ -197466,7 +197610,7 @@ PyTorch implementation of 'Squeeze and Excite' Guided Few Shot Segmentation of V
     biotools:primaryContact <http://orcid.org/0000-0001-6104-7134> .
 
 <https://bio.tools/fgsea> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3053 ;
@@ -197483,8 +197627,29 @@ PyTorch implementation of 'Squeeze and Excite' Guided Few Shot Segmentation of V
     sc:url "http://bioconductor.org/packages/release/bioc/html/fgsea.html" ;
     biotools:primaryContact "Alexey Sergushichev" .
 
+<https://bio.tools/fgted> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0622,
+        edam:topic_3673 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC264>,
+        "pmcid:PMC9235494",
+        "pubmed:35758819" ;
+    sc:description "The effect of genome graph expressiveness on the discrepancy between genome graph distance and string set distance." ;
+    sc:featureList edam:operation_0524,
+        edam:operation_3096,
+        edam:operation_3359 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "FGTED" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/Kingsford-Group/gtedemedtest/" .
+
 <https://bio.tools/fgviewer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_0659,
@@ -197502,7 +197667,7 @@ PyTorch implementation of 'Squeeze and Excite' Guided Few Shot Segmentation of V
     sc:url "https://ccsmweb.uth.edu/FGviewer" .
 
 <https://bio.tools/fhir-pit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_0769,
         edam:topic_3063 ;
@@ -197517,7 +197682,7 @@ PyTorch implementation of 'Squeeze and Excite' Guided Few Shot Segmentation of V
     sc:url "https://github.com/NCATS-Tangerine/FHIR-PIT" .
 
 <https://bio.tools/fhirspark> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3063,
         edam:topic_3366,
@@ -197532,7 +197697,7 @@ PyTorch implementation of 'Squeeze and Excite' Guided Few Shot Segmentation of V
     biotools:primaryContact "Niklas Reimer" .
 
 <https://bio.tools/fhitings> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0797,
         edam:topic_3174 ;
@@ -197548,7 +197713,7 @@ PyTorch implementation of 'Squeeze and Excite' Guided Few Shot Segmentation of V
     biotools:primaryContact "Jordan Peccia" .
 
 <https://bio.tools/fhldb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0625,
@@ -197566,7 +197731,7 @@ PyTorch implementation of 'Squeeze and Excite' Guided Few Shot Segmentation of V
     sc:url "https://www.biotoclin.org/FHLdb" .
 
 <https://bio.tools/fiberdock> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0176,
@@ -197588,7 +197753,7 @@ PyTorch implementation of 'Squeeze and Excite' Guided Few Shot Segmentation of V
     biotools:primaryContact "FiberDock Administrator" .
 
 <https://bio.tools/fiberq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -197606,7 +197771,7 @@ PyTorch implementation of 'Squeeze and Excite' Guided Few Shot Segmentation of V
     biotools:primaryContact "Pierre Ghesquiere" .
 
 <https://bio.tools/fibersim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0621,
@@ -197624,8 +197789,46 @@ PyTorch implementation of 'Squeeze and Excite' Guided Few Shot Segmentation of V
         "Windows" ;
     sc:url "https://campbell-muscle-lab.github.io/FiberSim/" .
 
+<https://bio.tools/fibro-cosanet> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0634,
+        edam:topic_3452,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1088/1361-6560/AC36A2>,
+        "pubmed:34736226" ;
+    sc:description "Pulmonary fibrosis prognosis prediction using a convolutional self attention network." ;
+    sc:featureList edam:operation_3927 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "Fibro-CoSANet" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/zabir-nabil/Fibro-CoSANet" .
+
+<https://bio.tools/fibroad> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0121,
+        edam:topic_0634,
+        edam:topic_3169,
+        edam:topic_3170,
+        edam:topic_3674 ;
+    sc:citation <https://doi.org/10.1093/DATABASE/BAAC015>,
+        "pubmed:35277958" ;
+    sc:description "A manually curated resource for multi-omics level evidence integration of fibrosis research" ;
+    sc:featureList edam:operation_2421,
+        edam:operation_3223,
+        edam:operation_3431 ;
+    sc:name "FibROAD" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://www.fibroad.org" .
+
 <https://bio.tools/fibromine> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0128,
@@ -197648,7 +197851,7 @@ PyTorch implementation of 'Squeeze and Excite' Guided Few Shot Segmentation of V
         "Vassilis Aidinis" .
 
 <https://bio.tools/fibsi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0749,
@@ -197664,8 +197867,32 @@ PyTorch implementation of 'Squeeze and Excite' Guided Few Shot Segmentation of V
     sc:name "FIBSI" ;
     sc:url "https://github.com/rmcassidy/FIBSI_program" .
 
+<https://bio.tools/ficos> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0176,
+        edam:topic_0602,
+        edam:topic_0821,
+        edam:topic_3172,
+        edam:topic_3315 ;
+    sc:citation <https://doi.org/10.1371/JOURNAL.PCBI.1009410>,
+        "pmcid:PMC8476010",
+        "pubmed:34499658" ;
+    sc:description """FiCoS (Fine- and Coarse-grained Simulator) is a novel efficient deterministic simulator of biological systems based on two different integration methods belonging to the Runge-Kutta family: the Dormand–Prince (DOPRI) method [1, 2], used in the absence of stiffness, and the Radau IIA method [3, 4] exploited when the system is stiff.
+Specifically, FiCoS exploits the DOPRI5 and RADAU5 methods, which are explicit and implicit adaptive Runge-Kutta methods of order 5, capable of varying the integration step-size during the resolution of the Ordinary Differential Equation (ODE) systems.""" ;
+    sc:featureList edam:operation_0244,
+        edam:operation_2426,
+        edam:operation_3927 ;
+    sc:isAccessibleForFree true ;
+    sc:license "BSD-3-Clause" ;
+    sc:name "FiCoS" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://gitlab.com/andrea-tango/ficos" .
+
 <https://bio.tools/fict> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_2229,
@@ -197684,8 +197911,37 @@ Is a software for achieve accurate cell typing by iteratively incorporating neig
     sc:name "FICT" ;
     sc:url "https://github.com/haotianteng/FICT" .
 
+<https://bio.tools/fidbac> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Nucleic acid sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0196,
+        edam:topic_0637,
+        edam:topic_0769,
+        edam:topic_2885,
+        edam:topic_3293 ;
+    sc:citation <https://doi.org/10.3389/FMICB.2021.723577>,
+        "pmcid:PMC8558511",
+        "pubmed:34733246" ;
+    sc:description "fIDBAC integrated an accuracy bacterial identification, automated strain typing and downstream AR/VF gene prediction analysis in a single, coherent workflow." ;
+    sc:featureList edam:operation_0525,
+        edam:operation_2454,
+        edam:operation_3196,
+        edam:operation_3431,
+        edam:operation_3461 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Other" ;
+    sc:name "fIDBAC" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://fbac.dmicrobe.cn" .
+
 <https://bio.tools/fiddle> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3068,
         edam:topic_3303,
@@ -197701,7 +197957,7 @@ Is a software for achieve accurate cell typing by iteratively incorporating neig
     sc:url "http://s-quest.bihealth.org/fiddle/" .
 
 <https://bio.tools/fiddle-diagram-driven> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0602,
         edam:topic_2259,
@@ -197719,14 +197975,12 @@ Is a software for achieve accurate cell typing by iteratively incorporating neig
 
 <https://bio.tools/fidea> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0928" ;
-            sc:name "Gene expression profile" ;
-            sc:sameAs "http://edamontology.org/data_0928" ] ;
+            sc:additionalType "http://edamontology.org/data_0928" ;
+            sc:name "Gene expression profile" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2984" ;
-            sc:name "Pathway or network report" ;
-            sc:sameAs "http://edamontology.org/data_2984" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2984" ;
+            sc:name "Pathway or network report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3308 ;
@@ -197744,7 +197998,7 @@ Is a software for achieve accurate cell typing by iteratively incorporating neig
     biotools:primaryContact "Luigi Grassi" .
 
 <https://bio.tools/fidlib> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3334 ;
     sc:description "Run-time filter design and execution library." ;
@@ -197759,14 +198013,14 @@ Is a software for achieve accurate cell typing by iteratively incorporating neig
 
 <https://bio.tools/fidosnp> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ] ;
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence variations" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence variations" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Web service" ;
     sc:applicationSubCategory edam:topic_2885 ;
@@ -197786,7 +198040,7 @@ Is a software for achieve accurate cell typing by iteratively incorporating neig
     sc:url "http://snps.biofold.org/fido-snp/" .
 
 <https://bio.tools/fidpd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3510 ;
     sc:citation <https://doi.org/10.1186/s12859-018-2206-2> ;
@@ -197801,7 +198055,7 @@ Is a software for achieve accurate cell typing by iteratively incorporating neig
     biotools:primaryContact "Dengming Ming" .
 
 <https://bio.tools/field-rt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_2815,
@@ -197819,7 +198073,7 @@ Is a software for achieve accurate cell typing by iteratively incorporating neig
     sc:url "https://github.com/concettapiazzese/FIELDRT-GitHub" .
 
 <https://bio.tools/fifbase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0218,
         edam:topic_3170,
@@ -197838,7 +198092,7 @@ To get the most out of Fifbase start with our 3 minute tour.""" ;
     sc:url "http://www.nwsuaflmz.com/FifBase/" .
 
 <https://bio.tools/figaro> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:citation "pubmed:18202027" ;
@@ -197852,8 +198106,30 @@ To get the most out of Fifbase start with our 3 minute tour.""" ;
     biotools:primaryContact "James A. Yorke",
         "Mihai Pop" .
 
+<https://bio.tools/figbird> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0196,
+        edam:topic_0621,
+        edam:topic_3068 ;
+    sc:citation <https://doi.org/10.1101/2021.11.24.469861> ;
+    sc:description "A probabilistic method for filling gaps in genome assemblies." ;
+    sc:featureList edam:operation_0232,
+        edam:operation_0524,
+        edam:operation_0525,
+        edam:operation_3216,
+        edam:operation_3219 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "Figbird" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://github.com/SumitTarafder/Figbird/blob/main/Manual.pdf> ;
+    sc:url "https://github.com/SumitTarafder/Figbird" .
+
 <https://bio.tools/figsys> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_3071 ;
@@ -197868,7 +198144,7 @@ To get the most out of Fifbase start with our 3 minute tour.""" ;
     sc:url "http://www.biosoft.com/w/figsys.htm" .
 
 <https://bio.tools/figtree> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -197883,7 +198159,7 @@ To get the most out of Fifbase start with our 3 minute tour.""" ;
     sc:url "http://tree.bio.ed.ac.uk/software/figtree/" .
 
 <https://bio.tools/figurecomposer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3382,
@@ -197898,7 +198174,7 @@ To get the most out of Fifbase start with our 3 minute tour.""" ;
     sc:url "https://baohongz.github.io/figureComposer" .
 
 <https://bio.tools/fiji-kappa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_2229,
         edam:topic_3382 ;
@@ -197918,7 +198194,7 @@ You can fire a remote Jupyter notebook server and reproduce the analysis using B
     sc:url "https://github.com/fiji/Kappa" .
 
 <https://bio.tools/fijiyama> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3067,
         edam:topic_3315,
         edam:topic_3384,
@@ -197934,7 +198210,7 @@ You can fire a remote Jupyter notebook server and reproduce the analysis using B
     sc:url "https://imagej.github.io/Fijiyama" .
 
 <https://bio.tools/filer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -197957,7 +198233,7 @@ Functional genomics repository (FILER) is a database developed by NIAGADS with t
     sc:url "https://lisanwanglab.org/FILER" .
 
 <https://bio.tools/filtar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0621,
@@ -197976,7 +198252,7 @@ Functional genomics repository (FILER) is a database developed by NIAGADS with t
     sc:url "https://github.com/TBradley27/FilTar" .
 
 <https://bio.tools/filter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0769 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/bts311> ;
@@ -197994,7 +198270,7 @@ Functional genomics repository (FILER) is a database developed by NIAGADS with t
         "Vincent Moulton" .
 
 <https://bio.tools/filter-noise-interpolate-microscopy-images-frequency-domain> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -198013,18 +198289,18 @@ Functional genomics repository (FILER) is a database developed by NIAGADS with t
 
 <https://bio.tools/filtercontrol> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3168,
         edam:topic_3169 ;
@@ -198040,8 +198316,30 @@ Functional genomics repository (FILER) is a database developed by NIAGADS with t
     sc:url "https://galaxy.pasteur.fr/tool_runner?tool_id=toolshed.pasteur.fr/repos/fmareuil/filtercontrolpeaks/filterControl/1.0" ;
     biotools:primaryContact "Galaxy Support Team" .
 
+<https://bio.tools/filterffpe> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_3168,
+        edam:topic_3175,
+        edam:topic_3277 ;
+    sc:citation <https://doi.org/10.1093/GIGASCIENCE/GIAB065>,
+        "pmcid:PMC8458033",
+        "pubmed:34553214" ;
+    sc:description "This package finds and filters artificial chimeric reads specifically generated in next-generation sequencing (NGS) process of formalin-fixed paraffin-embedded (FFPE) tissues. These artificial chimeric reads can lead to a large number of false positive structural variation (SV) calls. The required input is an indexed BAM file of a FFPE sample." ;
+    sc:featureList edam:operation_3227,
+        edam:operation_3435,
+        edam:operation_3675 ;
+    sc:isAccessibleForFree true ;
+    sc:license "LGPL-3.0" ;
+    sc:name "FilterFFPE" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://bioconductor.org/packages/release/bioc/manuals/FilterFFPE/man/FilterFFPE.pdf> ;
+    sc:url "https://bioconductor.org/packages/release/bioc/html/FilterFFPE.html" .
+
 <https://bio.tools/filternhp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3068,
         edam:topic_3305,
@@ -198061,14 +198359,14 @@ Functional genomics repository (FILER) is a database developed by NIAGADS with t
     sc:url "https://filterNHP.dpz.eu" .
 
 <https://bio.tools/filtlong> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "Filtlong is a tool for filtering long reads by quality. It can take a set of long reads and produce a smaller, better subset. It uses both read length (longer is better) and read identity (higher is better) when choosing which reads pass the filter." ;
     sc:name "Filtlong" ;
     sc:softwareVersion "v0.2.0" ;
     sc:url "https://github.com/rrwick/Filtlong" .
 
 <https://bio.tools/fimdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_3071,
         edam:topic_3382 ;
@@ -198078,8 +198376,50 @@ Functional genomics repository (FILER) is a database developed by NIAGADS with t
     sc:url "https://clffwrkmn.net/" ;
     biotools:primaryContact <http://orcid.org/0000-0002-2206-0325> .
 
+<https://bio.tools/fimdp> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0108,
+        edam:topic_0203,
+        edam:topic_2269 ;
+    sc:citation <https://doi.org/10.1007/978-3-030-90870-6_34>,
+        "pmcid:PMC8780852",
+        "pubmed:35072175" ;
+    sc:description "FiMDPEnv is a Python package that provides realistic simulation environments that model real-world consumption Markov decision processes (consumption MDPs)." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3891 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "FiMDP" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://github.com/FiMDP/tutorials> ;
+    sc:url "https://github.com/FiMDP/FiMDP" .
+
+<https://bio.tools/fimo> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0084,
+        edam:topic_0199,
+        edam:topic_0625,
+        edam:topic_2269,
+        edam:topic_2640 ;
+    sc:citation <https://doi.org/10.1101/2022.01.23.477444> ;
+    sc:description "Inferring the Temporal Order of Mutations on Clonal Phylogeny under Finite-sites Models." ;
+    sc:featureList edam:operation_3196,
+        edam:operation_3435,
+        edam:operation_3799 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "FiMO" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/aveshag/FiMO" .
+
 <https://bio.tools/fimpute> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3056 ;
     sc:citation <https://doi.org/10.1186/1471-2164-15-478> ;
@@ -198093,14 +198433,14 @@ Functional genomics repository (FILER) is a database developed by NIAGADS with t
 
 <https://bio.tools/fimtrack> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3424" ;
-            sc:name "Raw image" ;
-            sc:sameAs "http://edamontology.org/data_3424" ] ;
+            sc:additionalType "http://edamontology.org/data_3424" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Raw image" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_3382 ;
@@ -198118,7 +198458,7 @@ Functional genomics repository (FILER) is a database developed by NIAGADS with t
     sc:url "https://www.uni-muenster.de/PRIA/en/FIM/index.html" .
 
 <https://bio.tools/fimtyper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3056,
         edam:topic_3301,
@@ -198136,7 +198476,7 @@ Functional genomics repository (FILER) is a database developed by NIAGADS with t
     biotools:primaryContact "Louise Roer" .
 
 <https://bio.tools/finFindR> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_3382,
@@ -198161,7 +198501,7 @@ finFindR-package: Dolphin Recognition via Automated Cropping Tracing and..""" ;
     sc:url "https://rdrr.io/github/haimeh/finFindR/man/finFindR-package.html" .
 
 <https://bio.tools/finaledb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_0654,
@@ -198178,7 +198518,7 @@ finFindR-package: Dolphin Recognition via Automated Cropping Tracing and..""" ;
     sc:url "http://finaledb.research.cchmc.org/" .
 
 <https://bio.tools/find> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0659,
@@ -198194,7 +198534,7 @@ finFindR-package: Dolphin Recognition via Automated Cropping Tracing and..""" ;
     sc:url "http://find.princeton.edu" .
 
 <https://bio.tools/find-core-toolbox> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0593,
         edam:topic_3318,
@@ -198217,7 +198557,7 @@ finFindR-package: Dolphin Recognition via Automated Cropping Tracing and..""" ;
     biotools:primaryContact "David Snyder" .
 
 <https://bio.tools/find-tfbs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0625,
@@ -198235,7 +198575,7 @@ finFindR-package: Dolphin Recognition via Automated Cropping Tracing and..""" ;
     sc:url "https://github.com/Helkafen/find-tfbs" .
 
 <https://bio.tools/find-ungapped-pattern-window-protein-sequences> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0091,
@@ -198251,7 +198591,7 @@ finFindR-package: Dolphin Recognition via Automated Cropping Tracing and..""" ;
     biotools:primaryContact "Xugang Ye" .
 
 <https://bio.tools/find_regions_of_interest_and_update_opends> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "Finds regions of interest in a specimen image and adds them to an openDS object" ;
     sc:featureList edam:operation_1812,
         edam:operation_2990,
@@ -198262,7 +198602,7 @@ finFindR-package: Dolphin Recognition via Automated Cropping Tracing and..""" ;
     sc:url "http://sdr.nhm.ac.uk" .
 
 <https://bio.tools/findbase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0208,
@@ -198284,7 +198624,7 @@ finFindR-package: Dolphin Recognition via Automated Cropping Tracing and..""" ;
     biotools:primaryContact "FINDbase Support" .
 
 <https://bio.tools/finder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0203,
@@ -198301,7 +198641,7 @@ finFindR-package: Dolphin Recognition via Automated Cropping Tracing and..""" ;
     sc:url "https://github.com/sagnikbanerjee15/Finder" .
 
 <https://bio.tools/findere> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_3372 ;
@@ -198317,10 +198657,10 @@ finFindR-package: Dolphin Recognition via Automated Cropping Tracing and..""" ;
 
 <https://bio.tools/findgeo> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein structure" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3292 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/bts246> ;
@@ -198336,24 +198676,44 @@ finFindR-package: Dolphin Recognition via Automated Cropping Tracing and..""" ;
     sc:url "http://metalweb.cerm.unifi.it/tools/findgeo/" ;
     biotools:primaryContact "Claudia Andreini" .
 
+<https://bio.tools/findit2> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0204,
+        edam:topic_0749,
+        edam:topic_3169,
+        edam:topic_3170,
+        edam:topic_3940 ;
+    sc:citation <https://doi.org/10.1186/S12864-022-08506-8>,
+        "pmcid:PMC8988339",
+        "pubmed:35392802" ;
+    sc:description "An R/Bioconductor package to identify influential transcription factor and targets based on multi-omics data." ;
+    sc:featureList edam:operation_3215,
+        edam:operation_3222,
+        edam:operation_3223 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Artistic-2.0" ;
+    sc:name "FindIT2" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://bioconductor.org/packages/devel/bioc/manuals/FindIT2/man/FindIT2.pdf> ;
+    sc:url "https://bioconductor.org/packages/devel/bioc/html/FindIT2.html" .
+
 <https://bio.tools/findkm> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2024" ;
-            sc:name "Enzyme kinetics data" ;
-            sc:sameAs "http://edamontology.org/data_2024" ] ;
+            sc:additionalType "http://edamontology.org/data_2024" ;
+            sc:name "Enzyme kinetics data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2025" ;
-            sc:name "Michaelis Menten plot" ;
-            sc:sameAs "http://edamontology.org/data_2025" ],
+            sc:additionalType "http://edamontology.org/data_2026" ;
+            sc:name "Hanes Woolf plot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2978" ;
-            sc:name "Reaction data" ;
-            sc:sameAs "http://edamontology.org/data_2978" ],
+            sc:additionalType "http://edamontology.org/data_2025" ;
+            sc:name "Michaelis Menten plot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2026" ;
-            sc:name "Hanes Woolf plot" ;
-            sc:sameAs "http://edamontology.org/data_2026" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2978" ;
+            sc:name "Reaction data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0821 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -198383,7 +198743,7 @@ finFindR-package: Dolphin Recognition via Automated Cropping Tracing and..""" ;
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/findkm.html" .
 
 <https://bio.tools/findmyfriends> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0622,
@@ -198401,8 +198761,30 @@ finFindR-package: Dolphin Recognition via Automated Cropping Tracing and..""" ;
     sc:url "http://bioconductor.org/packages/release/bioc/html/FindMyFriends.html" ;
     biotools:primaryContact "Thomas Lin Pedersen" .
 
+<https://bio.tools/findpc> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_3170,
+        edam:topic_3337 ;
+    sc:citation <https://doi.org/10.1093/bioinformatics/btac235>,
+        "pubmed:35394020" ;
+    sc:description "An R package to automatically select number of principal components in single-cell analysis." ;
+    sc:featureList edam:operation_3435,
+        edam:operation_3891,
+        edam:operation_3935,
+        edam:operation_3960 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Other" ;
+    sc:name "findPC" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <http://htmlpreview.github.io/?https://github.com/haotian-zhuang/findPC/blob/main/vignettes/UserManual.html> ;
+    sc:url "https://github.com/haotian-zhuang/findPC" .
+
 <https://bio.tools/findpeaks> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0622 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btn305> ;
@@ -198420,7 +198802,7 @@ finFindR-package: Dolphin Recognition via Automated Cropping Tracing and..""" ;
     biotools:primaryContact "Anthony Fejes" .
 
 <https://bio.tools/findpept> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0601,
@@ -198438,18 +198820,18 @@ finFindR-package: Dolphin Recognition via Automated Cropping Tracing and..""" ;
 
 <https://bio.tools/findpromoter> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0749 ;
@@ -198466,8 +198848,34 @@ finFindR-package: Dolphin Recognition via Automated Cropping Tracing and..""" ;
     sc:url "https://galaxy.pasteur.fr/tool_runner?tool_id=toolshed.pasteur.fr/repos/fmareuil/promoteur_tools/findpromoter/1.0" ;
     biotools:primaryContact "Galaxy Support Team" .
 
+<https://bio.tools/findr> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein structure" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0202,
+        edam:topic_2275,
+        edam:topic_3375,
+        edam:topic_3957 ;
+    sc:citation <https://doi.org/10.1016/J.SYNBIO.2021.11.004>,
+        "pmcid:PMC8632724",
+        "pubmed:34901479" ;
+    sc:description "A web server for in silico D-peptide ligand identification." ;
+    sc:featureList edam:operation_2476,
+        edam:operation_3899,
+        edam:operation_3938 ;
+    sc:isAccessibleForFree true ;
+    sc:name "finDr" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://findr.biologie.uni-freiburg.de/" .
+
 <https://bio.tools/findzebra> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3063,
         edam:topic_3325,
@@ -198488,8 +198896,50 @@ finFindR-package: Dolphin Recognition via Automated Cropping Tracing and..""" ;
     sc:url "http://www.findzebra.com/raredisease" ;
     biotools:primaryContact "FindZebra Support" .
 
+<https://bio.tools/findzx> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_0621,
+        edam:topic_0654,
+        edam:topic_3293,
+        edam:topic_3944 ;
+    sc:citation <https://doi.org/10.1101/2021.10.18.464774> ;
+    sc:description "An automated pipeline for detecting and visualising sex chromosomes using whole-genome sequencing data." ;
+    sc:featureList edam:operation_0337 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "findZX" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/hsigeman/findZX" .
+
+<https://bio.tools/finemav> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_2885,
+        edam:topic_3174,
+        edam:topic_3299,
+        edam:topic_3673,
+        edam:topic_3796 ;
+    sc:citation <https://doi.org/10.1186/S12859-021-04506-9>,
+        "pmcid:PMC8684245",
+        "pubmed:34922440" ;
+    sc:description "This stand-alone program implements the Fine-Mapping of Adaptive Variation (FineMAV) statistic for detection of positively selected variants." ;
+    sc:featureList edam:operation_3196,
+        edam:operation_3208,
+        edam:operation_3226,
+        edam:operation_3227 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "FineMAV" ;
+    sc:operatingSystem "Linux" ;
+    sc:softwareHelp <https://github.com/fadilla-wahyudi/finemav/wiki/5.-GUI-version-(Linux)> ;
+    sc:url "https://github.com/fadilla-wahyudi/finemav" .
+
 <https://bio.tools/finer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_2229,
@@ -198512,7 +198962,7 @@ finFindR-package: Dolphin Recognition via Automated Cropping Tracing and..""" ;
     sc:url "https://github.com/haochenucr/FINER" .
 
 <https://bio.tools/finestr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0102,
@@ -198529,7 +198979,7 @@ finFindR-package: Dolphin Recognition via Automated Cropping Tracing and..""" ;
     sc:url "http://www.cs.bgu.ac.il/~nucleom/" .
 
 <https://bio.tools/finestructure> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -198547,18 +198997,15 @@ finFindR-package: Dolphin Recognition via Automated Cropping Tracing and..""" ;
 
 <https://bio.tools/fingerprintscan> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:name "Protein sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0858" ;
-            sc:name "Sequence signature matches" ;
-            sc:sameAs "http://edamontology.org/data_0858" ],
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:name "Protein features" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0858" ;
+            sc:name "Sequence signature matches" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0623 ;
@@ -198581,7 +199028,7 @@ finFindR-package: Dolphin Recognition via Automated Cropping Tracing and..""" ;
     biotools:primaryContact "Web Production" .
 
 <https://bio.tools/fings> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0622,
@@ -198604,7 +199051,7 @@ We have developed Filters for Next Generation Sequencing (FiNGS), software writt
     sc:url "https://github.com/cpwardell/FiNGS" .
 
 <https://bio.tools/finsurf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_0749,
@@ -198623,7 +199070,7 @@ We have developed Filters for Next Generation Sequencing (FiNGS), software writt
     biotools:primaryContact <http://orcid.org/0000-0002-8209-173X> .
 
 <https://bio.tools/fire> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0622,
@@ -198640,7 +199087,7 @@ We have developed Filters for Next Generation Sequencing (FiNGS), software writt
     sc:url "https://tavazoielab.c2b2.columbia.edu/FIRE/" .
 
 <https://bio.tools/fire-pro> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0108,
@@ -198658,7 +199105,7 @@ We have developed Filters for Next Generation Sequencing (FiNGS), software writt
     sc:url "https://tavazoielab.c2b2.columbia.edu/FIRE-pro/" .
 
 <https://bio.tools/firecaller> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3169,
@@ -198681,22 +199128,50 @@ Hi-C experiments have been widely adopted to study chromatin spatial organizatio
     sc:url "https://yunliweb.its.unc.edu/FIREcaller" .
 
 <https://bio.tools/firedb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2291" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "UniProt ID" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1127" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "PDB ID" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2007" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "UniProt keyword" ] ;
+    bsc:output [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:name "Protein features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API" ;
-    sc:applicationSubCategory edam:topic_0128 ;
-    sc:citation <https://doi.org/10.1093/nar/gkt1127> ;
-    sc:description "A curated inventory of catalytic and biologically relevant small ligand-binding residues." ;
+    sc:applicationSubCategory edam:topic_0080,
+        edam:topic_0154,
+        edam:topic_3510,
+        edam:topic_3534 ;
+    sc:author <https://orcid.org/0000-0002-5092-1284>,
+        <https://orcid.org/0000-0002-9446-8063> ;
+    sc:citation <https://doi.org/10.1093/nar/gkl897>,
+        <https://doi.org/10.1093/nar/gkt1127>,
+        "pmcid:PMC1716728",
+        "pmcid:PMC3965074",
+        "pubmed:17132832",
+        "pubmed:24243844" ;
+    sc:description "A curated inventory of catalytic and biologically relevant small ligand-binding sites." ;
     sc:featureList edam:operation_2422 ;
+    sc:isAccessibleForFree true ;
+    sc:license "CC-BY-NC-ND-4.0" ;
     sc:name "FireDB" ;
     sc:operatingSystem "Linux",
         "Mac",
         "Windows" ;
-    sc:softwareHelp <http://firedb.bioinfo.cnio.es/> ;
+    sc:softwareHelp <https://firedb.bioinfo.cnio.es/html/FireDB_help.html> ;
     sc:softwareVersion "1" ;
-    sc:url "http://firedb.bioinfo.cnio.es/" .
+    sc:url "http://firedb.bioinfo.cnio.es/" ;
+    biotools:primaryContact <https://orcid.org/0000-0001-9046-6370> .
 
 <https://bio.tools/firedb_ws> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API" ;
     sc:applicationSubCategory edam:topic_0078 ;
     sc:citation <https://doi.org/10.1093/nar/gkt1127> ;
@@ -198714,7 +199189,7 @@ Hi-C experiments have been widely adopted to study chromatin spatial organizatio
     sc:url "http://firedb.bioinfo.cnio.es/rest/FireDB_rest.pl" .
 
 <https://bio.tools/firedock> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0176,
@@ -198738,26 +199213,26 @@ Hi-C experiments have been widely adopted to study chromatin spatial organizatio
 
 <https://bio.tools/fireprot> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ] ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein structure" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ],
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein structure" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1537" ;
-            sc:name "Protein structure report" ;
-            sc:sameAs "http://edamontology.org/data_1537" ],
+            sc:additionalType "http://edamontology.org/data_1384" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment (protein)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1384" ;
-            sc:name "Sequence alignment (protein)" ;
-            sc:sameAs "http://edamontology.org/data_1384" ],
+            sc:additionalType "http://edamontology.org/data_1537" ;
+            sc:encodingFormat "http://edamontology.org/format_1964" ;
+            sc:name "Protein structure report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2974" ;
-            sc:name "Protein sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_2974" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2974" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence (raw)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_1317,
@@ -198802,22 +199277,22 @@ Hi-C experiments have been widely adopted to study chromatin spatial organizatio
 
 <https://bio.tools/fireprot-asr> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0872" ;
-            sc:name "Phylogenetic tree" ;
-            sc:sameAs "http://edamontology.org/data_0872" ],
+            sc:additionalType "http://edamontology.org/data_1384" ;
+            sc:encodingFormat "http://edamontology.org/format_1984" ;
+            sc:name "Protein sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ],
+            sc:additionalType "http://edamontology.org/data_0872" ;
+            sc:encodingFormat "http://edamontology.org/format_1910" ;
+            sc:name "Phylogenetic tree" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1384" ;
-            sc:name "Protein sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_1384" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0121,
@@ -198851,7 +199326,7 @@ Hi-C experiments have been widely adopted to study chromatin spatial organizatio
     biotools:primaryContact "FireProt ASR team" .
 
 <https://bio.tools/fireprotdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
@@ -198888,7 +199363,7 @@ Hi-C experiments have been widely adopted to study chromatin spatial organizatio
     biotools:primaryContact "FireProt team" .
 
 <https://bio.tools/fires> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0157,
         edam:topic_0166,
@@ -198906,7 +199381,7 @@ Hi-C experiments have been widely adopted to study chromatin spatial organizatio
     sc:url "http://fires.ifc.unam.mx" .
 
 <https://bio.tools/firestar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078 ;
     sc:citation <https://doi.org/10.1093/nar/gkr437> ;
@@ -198924,7 +199399,7 @@ Hi-C experiments have been widely adopted to study chromatin spatial organizatio
     sc:url "http://firedb.bioinfo.cnio.es/Php/FireStar.php" .
 
 <https://bio.tools/firestar_ws> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API" ;
     sc:applicationSubCategory edam:topic_0078 ;
     sc:citation <https://doi.org/10.1093/nar/gkr437> ;
@@ -198939,7 +199414,7 @@ Hi-C experiments have been widely adopted to study chromatin spatial organizatio
     sc:url "http://firedb.bioinfo.cnio.es/Php/fstarTEXT.php" .
 
 <https://bio.tools/fireworks> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2229,
@@ -198952,7 +199427,7 @@ Summary The interrelated programs essential for cellular fitness in the face of
     sc:url "http://fireworks.mendillolab.org/" .
 
 <https://bio.tools/firm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_2229,
@@ -198965,7 +199440,7 @@ Summary The interrelated programs essential for cellular fitness in the face of
     sc:url "https://github.com/mingjingsi/FIRM" .
 
 <https://bio.tools/firm-avp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0154,
@@ -198981,7 +199456,7 @@ Summary The interrelated programs essential for cellular fitness in the face of
     sc:url "https://msc-viz.emsl.pnnl.gov/AVPR" .
 
 <https://bio.tools/first_person_bioimage> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_3383,
@@ -198999,7 +199474,7 @@ Summary The interrelated programs essential for cellular fitness in the face of
     sc:url "https://fpb.ceb.cam.ac.uk/" .
 
 <https://bio.tools/firstef> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0654,
@@ -199021,7 +199496,7 @@ Summary The interrelated programs essential for cellular fitness in the face of
         "Ramana Davuluri" .
 
 <https://bio.tools/firth_tools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0154,
@@ -199046,7 +199521,7 @@ Summary The interrelated programs essential for cellular fitness in the face of
     biotools:primaryContact "Andrew Firth" .
 
 <https://bio.tools/fish> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0160,
@@ -199064,7 +199539,7 @@ Summary The interrelated programs essential for cellular fitness in the face of
     sc:url "http://max.ucmp.umu.se/sahmm/" .
 
 <https://bio.tools/fish_amyloid> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078 ;
     sc:citation <https://doi.org/10.1186/1471-2105-15-54>,
@@ -199080,7 +199555,7 @@ Summary The interrelated programs essential for cellular fitness in the face of
     sc:url "http://comprec-lin.iiar.pwr.edu.pl/fishInput/" .
 
 <https://bio.tools/fish_finder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_2229,
@@ -199096,7 +199571,7 @@ Summary The interrelated programs essential for cellular fitness in the face of
     sc:url "https://code.google.com/p/fishfinder/" .
 
 <https://bio.tools/fish_oracle> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0622,
@@ -199113,14 +199588,12 @@ Summary The interrelated programs essential for cellular fitness in the face of
 
 <https://bio.tools/fish_profile_search> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0842" ;
-            sc:name "Identifier" ;
-            sc:sameAs "http://edamontology.org/data_0842" ] ;
+            sc:additionalType "http://edamontology.org/data_0842" ;
+            sc:name "Identifier" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:name "Protein features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1093/nar/gkl330> ;
@@ -199137,14 +199610,12 @@ Summary The interrelated programs essential for cellular fitness in the face of
 
 <https://bio.tools/fish_sequence_search> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:name "Protein sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:name "Protein features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1093/nar/gkl330> ;
@@ -199160,7 +199631,7 @@ Summary The interrelated programs essential for cellular fitness in the face of
     sc:url "http://babel.ucmp.umu.se/fish/hmmpfam.htm" .
 
 <https://bio.tools/fishalyser> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2229,
@@ -199180,7 +199651,7 @@ Summary The interrelated programs essential for cellular fitness in the face of
         "Karesh Arunakirinathan" .
 
 <https://bio.tools/fisher-exact-mid-p-method> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3070,
@@ -199199,7 +199670,7 @@ Summary The interrelated programs essential for cellular fitness in the face of
     biotools:primaryContact "Steinar Thorvaldsen" .
 
 <https://bio.tools/fishexp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_0621,
@@ -199220,8 +199691,32 @@ Summary The interrelated programs essential for cellular fitness in the face of
         "Windows" ;
     sc:url "https://bioinfo.njau.edu.cn/fishExp" .
 
+<https://bio.tools/fishmirna> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0084,
+        edam:topic_0102,
+        edam:topic_0203,
+        edam:topic_0621,
+        edam:topic_0659 ;
+    sc:citation <https://doi.org/10.1093/MOLBEV/MSAC004>,
+        "pmcid:PMC8826519",
+        "pubmed:35020925" ;
+    sc:description "FishmiRNA is an evolutionarily-supported, manually-curated, genome duplication-aware database for the annotation of ray-finned fish miRNA genes, their mature products and their expression profiles." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_0463,
+        edam:operation_2421,
+        edam:operation_3792 ;
+    sc:isAccessibleForFree true ;
+    sc:name "FishmiRNA" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://www.fishmirna.org" .
+
 <https://bio.tools/fishphylomaker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0610,
@@ -199239,7 +199734,7 @@ The package has two functions FishTaxaMaker and FishPhyloMaker. The first genera
     biotools:primaryContact <https://orcid.org/0000-0002-5144-5312> .
 
 <https://bio.tools/fishplot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3452 ;
@@ -199257,8 +199752,43 @@ The package has two functions FishTaxaMaker and FishPhyloMaker. The first genera
     sc:url "https://github.com/chrisamiller/fishplot" ;
     biotools:primaryContact <http://orcid.org/0000-0003-4266-6700> .
 
+<https://bio.tools/fishsizer> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Desktop application" ;
+    sc:applicationSubCategory edam:topic_0610,
+        edam:topic_0621,
+        edam:topic_0769,
+        edam:topic_3382 ;
+    sc:citation <https://doi.org/10.1002/ECE3.8672>,
+        "pmcid:PMC8928902",
+        "pubmed:35342596" ;
+    sc:description "FishSizer is an open-source software developed to assist researchers in the use of estimating length and depth of fish larvae by semi-automatization of the process." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3435,
+        edam:operation_3443 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "FishSizer" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/jeppehave/FishSizer" .
+
+<https://bio.tools/fisipred> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:description "FiSiPred: This method predict dihedral angles of amino acids of a protein using very simple technique. This server allows users to predict dihedral angles using average based prediction (ABP) and secondary structure assisted average angle based prediction (SABP) methods." ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "fisipred" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/fisipred/index.html> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/fisipred/index.html" .
+
 <https://bio.tools/fist> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0128,
@@ -199274,7 +199804,7 @@ The package has two functions FishTaxaMaker and FishPhyloMaker. The first genera
     sc:url "https://github.com/kuanglab/FIST" .
 
 <https://bio.tools/fitTetra> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3516,
@@ -199297,34 +199827,8 @@ The package has two functions FishTaxaMaker and FishPhyloMaker. The first genera
     sc:url "https://cran.r-project.org/package=fitPoly" ;
     biotools:primaryContact "Roeland E. Voorrips" .
 
-<https://bio.tools/fit_pique> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0091,
-        edam:topic_0114,
-        edam:topic_0621,
-        edam:topic_0749,
-        edam:topic_3169 ;
-    sc:citation <https://doi.org/10.7287/PEERJ.PREPRINTS.290V2> ;
-    sc:description """Analyzing microbial ChIP-Seq data with Pique.
-
-A efficient peak finder for high coverage ChIP-seq experiments, written in python.
-
-The pique package is a high efficiency peak finder for ChIP-seq.
-
-experiments that yield high coverage allignments to the reference.
-
-genome. It was developed for studying gene expression in Halobacterium.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'Pique', 'Pique easy'""" ;
-    sc:featureList edam:operation_3192,
-        edam:operation_3215,
-        edam:operation_3222,
-        edam:operation_3629 ;
-    sc:license "BSD-3-Clause" ;
-    sc:name "fit pique" ;
-    sc:url "http://github.com/ryneches/pique" .
-
 <https://bio.tools/fitchi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3053,
@@ -199341,7 +199845,7 @@ genome. It was developed for studying gene expression in Halobacterium.
     biotools:primaryContact "Michael Matschiner" .
 
 <https://bio.tools/fitcovid19_branchingprocess> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3070,
@@ -199359,8 +199863,49 @@ genome. It was developed for studying gene expression in Halobacterium.
     sc:url "https://www.mathworks.com/matlabcentral/fileexchange/75382-fitcovid19_branchingprocess" ;
     biotools:primaryContact "Plamen Trayanov" .
 
+<https://bio.tools/fitdevo> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_2640,
+        edam:topic_3170,
+        edam:topic_3308,
+        edam:topic_3518 ;
+    sc:citation <https://doi.org/10.1093/BIB/BBAC293>,
+        "pubmed:35870444" ;
+    sc:description "Accurate inference of single-cell developmental potential using sample-specific gene weight." ;
+    sc:featureList edam:operation_3463,
+        edam:operation_3629,
+        edam:operation_3799 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "FitDevo" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/jumphone/fitdevo" .
+
+<https://bio.tools/fitdock> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0209,
+        edam:topic_0749,
+        edam:topic_2275 ;
+    sc:citation <https://doi.org/10.1093/BIB/BBAC087>,
+        "pubmed:35289358" ;
+    sc:description "FitDock is a novel protein–ligand docking method which outperforms state-of-the-art methods in terms of accuracy and speed, if the template is available." ;
+    sc:featureList edam:operation_0482,
+        edam:operation_3899,
+        edam:operation_4009 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "FitDock" ;
+    sc:operatingSystem "Linux",
+        "Windows" ;
+    sc:url "http://cao.labshare.cn/fitdock/" .
+
 <https://bio.tools/fithic> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0622 ;
@@ -199378,7 +199923,7 @@ genome. It was developed for studying gene expression in Halobacterium.
     biotools:primaryContact "Ruyu Tan" .
 
 <https://bio.tools/fithic-py> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0605,
         edam:topic_0621,
@@ -199399,7 +199944,7 @@ genome. It was developed for studying gene expression in Halobacterium.
     sc:url "https://github.com/ay-lab/fithic" .
 
 <https://bio.tools/fitmunk> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -199416,7 +199961,7 @@ genome. It was developed for studying gene expression in Halobacterium.
     sc:url "http://witold.med.virginia.edu/fitmunk/server/" .
 
 <https://bio.tools/fitom> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0099,
@@ -199433,7 +199978,7 @@ genome. It was developed for studying gene expression in Halobacterium.
     sc:url "http://erilllab.umbc.edu/research/software/fitom/" .
 
 <https://bio.tools/fits> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0602,
@@ -199455,7 +200000,7 @@ FITs work in two phases. It has been made so to handle very large read-count mat
     sc:url "https://reggenlab.github.io/FITs/" .
 
 <https://bio.tools/fitvirus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3305,
@@ -199474,7 +200019,7 @@ FITs work in two phases. It has been made so to handle very large read-count mat
     biotools:primaryContact "milan batista" .
 
 <https://bio.tools/fitviruscovid19> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3305,
@@ -199492,7 +200037,7 @@ FITs work in two phases. It has been made so to handle very large read-count mat
     biotools:primaryContact "milan batista" .
 
 <https://bio.tools/fitviruscv19-state> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3305,
@@ -199509,7 +200054,7 @@ FITs work in two phases. It has been made so to handle very large read-count mat
     biotools:primaryContact "JM2" .
 
 <https://bio.tools/fitviruscv19v3> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3305,
@@ -199528,7 +200073,7 @@ FITs work in two phases. It has been made so to handle very large read-count mat
     biotools:primaryContact "JM2" .
 
 <https://bio.tools/fitviruscv19varw> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3305,
@@ -199547,7 +200092,7 @@ FITs work in two phases. It has been made so to handle very large read-count mat
     biotools:primaryContact "Lateef Adewale Kareem" .
 
 <https://bio.tools/fivepseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3308,
         edam:topic_3512 ;
     sc:citation <https://doi.org/10.1101/2020.01.22.915421> ;
@@ -199560,7 +200105,7 @@ FITs work in two phases. It has been made so to handle very large read-count mat
     sc:url "http://pelechanolab.com/software/fivepseq" .
 
 <https://bio.tools/fivex> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -199579,7 +200124,7 @@ FIVEx: Functional Interpretation and Visualization of Expression.""" ;
     sc:url "https://eqtl.pheweb.org" .
 
 <https://bio.tools/fixseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:citation <https://doi.org/10.1371/journal.pcbi.1003494>,
@@ -199596,7 +200141,7 @@ FIVEx: Functional Interpretation and Visualization of Expression.""" ;
     sc:url "https://bitbucket.org/thashim/fixseq" .
 
 <https://bio.tools/fizzy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3511 ;
@@ -199610,8 +200155,34 @@ FIVEx: Functional Interpretation and Visualization of Expression.""" ;
     sc:softwareHelp <https://github.com/EESI/Fizzy/blob/master/README.md> ;
     sc:url "https://github.com/EESI/Fizzy" .
 
+<https://bio.tools/fjd-pipeline> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1193" ;
+            sc:encodingFormat "http://edamontology.org/format_2545" ;
+            sc:name "Tool name (FASTA)" ] ;
+    bsc:output [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence variations" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0091,
+        edam:topic_0622 ;
+    sc:citation <https://doi.org/10.1038/s41525-021-00278-6> ;
+    sc:description "Pipeline for Single Nucleotide Variants (SNVs) and Copy Number Variation (CNVs) variant calling" ;
+    sc:featureList edam:operation_0362,
+        edam:operation_3227,
+        edam:operation_3961 ;
+    sc:isAccessibleForFree true ;
+    sc:license "CC-BY-NC-SA-4.0" ;
+    sc:name "FJD-pipeline" ;
+    sc:operatingSystem "Linux" ;
+    sc:softwareHelp <https://github.com/TBLabFJD/VariantCallingFJD> ;
+    sc:url "https://github.com/TBLabFJD/VariantCallingFJD" ;
+    biotools:primaryContact <https://orcid.org/0000-0003-4099-9421> .
+
 <https://bio.tools/fl-qsar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Workbench" ;
     sc:applicationSubCategory edam:topic_0202,
@@ -199630,14 +200201,12 @@ FIVEx: Functional Interpretation and Visualization of Expression.""" ;
 
 <https://bio.tools/flad> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3494" ;
-            sc:name "DNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3494" ] ;
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:name "DNA sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3494" ;
-            sc:name "DNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3494" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:name "DNA sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3473 ;
@@ -199652,7 +200221,7 @@ FIVEx: Functional Interpretation and Visualization of Expression.""" ;
     sc:url "http://forensic.ugent.be/FLAD/" .
 
 <https://bio.tools/flagme> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3172 ;
@@ -199671,7 +200240,7 @@ FIVEx: Functional Interpretation and Visualization of Expression.""" ;
         "Riccardo Romoli" .
 
 <https://bio.tools/flags> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
@@ -199691,7 +200260,7 @@ FIVEx: Functional Interpretation and Visualization of Expression.""" ;
     sc:url "http://www.webflags.se/" .
 
 <https://bio.tools/flaimapper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0219,
@@ -199709,7 +200278,7 @@ FIVEx: Functional Interpretation and Visualization of Expression.""" ;
     sc:url "https://github.com/yhoogstrate/flaimapper" .
 
 <https://bio.tools/flame> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API",
         "Web application",
         "Workbench" ;
@@ -199730,14 +200299,24 @@ FIVEx: Functional Interpretation and Visualization of Expression.""" ;
     sc:url "https://github.com/phi-grib/flame" .
 
 <https://bio.tools/flame-enrichment> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:description "Functional enrichment analysis using multiple lists" ;
     sc:name "Flame" ;
     sc:url "http://bib.fleming.gr:3838/Flame/" .
 
+<https://bio.tools/flame_gpu_2> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:citation <https://doi.org/10.1109/HPCC.2012.79> ;
+    sc:description "FLAME (Coakley et al., 2012) is an open-source, generic formal framework for agent-based modelling that allows parallelisation using MPI, and developers can use it to create models and tools. Implementing a Flame simulation is done by using finite-state automata with memory (Coakley et al., 2006). This tool has been adapted to be used with distributed GPUs using the OpenCL standard (Richmond et al., 2010). Examples of uses of FLAME range from bioreactor studies (Kaul et al., 2013) to immunogenic studies (Kabiri Chimeh et al., 2019) or also epidermis modelling (Li et al., 2013)." ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "Flame GPU 2" ;
+    sc:softwareHelp <https://docs.flamegpu.com/> ;
+    sc:url "https://flamegpu.com/" .
+
 <https://bio.tools/flanker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0625,
@@ -199758,7 +200337,7 @@ Flanker is a tool for studying the homology of gene-flanking sequences. It will
     sc:url "https://github.com/wtmatlock/flanker" .
 
 <https://bio.tools/flare> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_3573 ;
     sc:citation <https://doi.org/10.1029/2019WR026138>,
@@ -199771,7 +200350,7 @@ Flanker is a tool for studying the homology of gene-flanking sequences. It will
     sc:url "https://github.com/CareyLabVT/FLARE" .
 
 <https://bio.tools/flash> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3168 ;
@@ -199786,7 +200365,7 @@ Flanker is a tool for studying the homology of gene-flanking sequences. It will
     biotools:primaryContact "FLASh team" .
 
 <https://bio.tools/flashdeconv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -199805,16 +200384,35 @@ Flanker is a tool for studying the homology of gene-flanking sequences. It will
     sc:softwareVersion "2.0 beta" ;
     sc:url "https://www.openms.de/comp/flashdeconv/" .
 
+<https://bio.tools/flashfm-ivis> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3055,
+        edam:topic_3382 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC453>,
+        "pubmed:35792838" ;
+    sc:description "Interactive visualisation for fine-mapping of multiple quantitative traits." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3791,
+        edam:operation_3799 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "flashfm-ivis" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://shiny.mrc-bsu.cam.ac.uk/apps/flashfm-ivis/" .
+
 <https://bio.tools/flashlfq> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ],
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:encodingFormat "http://edamontology.org/format_3858" ;
+            sc:name "Mass spectrometry data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Peptide identification" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -199830,7 +200428,7 @@ Flanker is a tool for studying the homology of gene-flanking sequences. It will
     biotools:primaryContact "Smith Research Group" .
 
 <https://bio.tools/flavi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0084,
@@ -199852,7 +200450,7 @@ Flanker is a tool for studying the homology of gene-flanking sequences. It will
     sc:url "http://flavi-web.com/" .
 
 <https://bio.tools/fldgen> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3315,
@@ -199875,7 +200473,7 @@ The fldgen package provides functions to learn the spatial, temporal, and inter-
     sc:url "https://jgcri.github.io/fldgen/" .
 
 <https://bio.tools/fldpnn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0121,
@@ -199896,7 +200494,7 @@ The fldgen package provides functions to learn the spatial, temporal, and inter-
     sc:url "http://biomine.cs.vcu.edu/servers/flDPnn/" .
 
 <https://bio.tools/fledfold> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0097,
@@ -199913,7 +200511,7 @@ The fldgen package provides functions to learn the spatial, temporal, and inter-
     biotools:primaryContact "Hao Zhang" .
 
 <https://bio.tools/flep-seq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_3170,
@@ -199931,7 +200529,7 @@ The fldgen package provides functions to learn the spatial, temporal, and inter-
     sc:url "https://github.com/ZhaiLab-SUSTech/FLEPSeq" .
 
 <https://bio.tools/flex> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -199953,10 +200551,10 @@ The fldgen package provides functions to learn the spatial, temporal, and inter-
 
 <https://bio.tools/flexbar> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Nucleic acid sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622 ;
     sc:citation "pubmed:24832523" ;
@@ -199976,7 +200574,7 @@ The fldgen package provides functions to learn the spatial, temporal, and inter-
     biotools:primaryContact "Johannes Roehr" .
 
 <https://bio.tools/flexdock> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_2275 ;
@@ -199989,7 +200587,7 @@ The fldgen package provides functions to learn the spatial, temporal, and inter-
     sc:url "http://bioinfo3d.cs.tau.ac.il/FlexDock/" .
 
 <https://bio.tools/flexdotplot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0203,
@@ -200003,7 +200601,7 @@ The fldgen package provides functions to learn the spatial, temporal, and inter-
     sc:url "https://github.com/Simon-Leonard/FlexDotPlot" .
 
 <https://bio.tools/flexflux> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0602,
@@ -200022,7 +200620,7 @@ The fldgen package provides functions to learn the spatial, temporal, and inter-
     biotools:primaryContact "Ludovic Cottret" .
 
 <https://bio.tools/flexgsea> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3307 ;
     sc:author <https://orcid.org/0000-0001-6514-4767> ;
@@ -200046,7 +200644,7 @@ The fldgen package provides functions to learn the spatial, temporal, and inter-
     biotools:primaryContact <https://orcid.org/0000-0001-6514-4767> .
 
 <https://bio.tools/flexible-cfdr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0625,
@@ -200064,7 +200662,7 @@ The fldgen package provides functions to learn the spatial, temporal, and inter-
     sc:url "https://github.com/jamesliley/cfdr/" .
 
 <https://bio.tools/fleximap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3170,
@@ -200080,7 +200678,7 @@ The fldgen package provides functions to learn the spatial, temporal, and inter-
     sc:url "https://github.com/kszkop/flexiMAP" .
 
 <https://bio.tools/flexiquant-lf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -200100,14 +200698,14 @@ The fldgen package provides functions to learn the spatial, temporal, and inter-
 
 <https://bio.tools/flexportal> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0883" ;
-            sc:name "Structure" ;
-            sc:sameAs "http://edamontology.org/data_0883" ] ;
+            sc:additionalType "http://edamontology.org/data_0883" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Structure" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein structure" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0078,
@@ -200143,7 +200741,7 @@ The fldgen package provides functions to learn the spatial, temporal, and inter-
     biotools:primaryContact <http://orcid.org/0000-0002-8291-8071> .
 
 <https://bio.tools/flexpred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078 ;
     sc:citation <https://doi.org/10.1002/prot.21899>,
@@ -200159,7 +200757,7 @@ The fldgen package provides functions to learn the spatial, temporal, and inter-
     sc:url "http://flexpred.rit.albany.edu/" .
 
 <https://bio.tools/flexprot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_2814 ;
@@ -200175,14 +200773,14 @@ The fldgen package provides functions to learn the spatial, temporal, and inter-
 
 <https://bio.tools/flexserv> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ] ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein structure" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0176 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btp304> ;
@@ -200198,8 +200796,27 @@ The fldgen package provides functions to learn the spatial, temporal, and inter-
     sc:url "http://mmb.irbbarcelona.org/FlexServ" ;
     biotools:primaryContact "Institute for Research in Biomedicine Barcelona" .
 
+<https://bio.tools/flextaxd> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0080,
+        edam:topic_0637,
+        edam:topic_3071,
+        edam:topic_3174 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAB621>,
+        "pubmed:34469515" ;
+    sc:description "FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomic databases (kraken2, ganon and more )." ;
+    sc:featureList edam:operation_3460 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "FlexTaxD" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/FOI-Bioinformatics/flextaxd" .
+
 <https://bio.tools/flextyper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2885,
         edam:topic_3170,
@@ -200217,7 +200834,7 @@ The fldgen package provides functions to learn the spatial, temporal, and inter-
     sc:url "https://github.com/wassermanlab/OpenFlexTyper" .
 
 <https://bio.tools/flimj> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3382,
@@ -200230,8 +200847,32 @@ The fldgen package provides functions to learn the spatial, temporal, and inter-
     sc:name "FLIMJ" ;
     sc:url "https://imagej.net/FLIMJ" .
 
+<https://bio.tools/flimma> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0769,
+        edam:topic_3170,
+        edam:topic_3263,
+        edam:topic_3518 ;
+    sc:citation <https://doi.org/10.1186/S13059-021-02553-2>,
+        "pmcid:PMC8670124",
+        "pubmed:34906207" ;
+    sc:description "Flimma is a federated privacy-aware version of state-of-the art differential expression analysis method limma voom." ;
+    sc:featureList edam:operation_3223,
+        edam:operation_3232,
+        edam:operation_3436,
+        edam:operation_3891 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Apache-2.0" ;
+    sc:name "Flimma" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://exbio.wzw.tum.de/flimma/" .
+
 <https://bio.tools/flimview> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3383,
         edam:topic_3384,
@@ -200246,14 +200887,14 @@ The fldgen package provides functions to learn the spatial, temporal, and inter-
 
 <https://bio.tools/flipflop> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
+            sc:name "Sequence alignment" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:encodingFormat "http://edamontology.org/format_2306" ;
+            sc:name "Sequence features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0099,
@@ -200278,7 +200919,7 @@ The fldgen package provides functions to learn the spatial, temporal, and inter-
     biotools:primaryContact "Elsa Bernard" .
 
 <https://bio.tools/flippant> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0081,
@@ -200298,7 +200939,7 @@ The fldgen package provides functions to learn the spatial, temporal, and inter-
     biotools:primaryContact "Richard J. Cotton" .
 
 <https://bio.tools/flipper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3316 ;
@@ -200317,8 +200958,28 @@ The fldgen package provides functions to learn the spatial, temporal, and inter-
     sc:url "http://bitlab-es.com/flipper/" ;
     biotools:primaryContact "Esteban Pérez-Wohlfeil" .
 
+<https://bio.tools/flirt> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_3300,
+        edam:topic_3474,
+        edam:topic_3572 ;
+    sc:citation <https://doi.org/10.1016/J.CMPB.2021.106461>,
+        "pubmed:34736174" ;
+    sc:description "FLIRT is a Feature generation tooLkIt for weaRable daTa such as that from your smartwatch or smart ring. With FLIRT you can easily transform wearable data into meaningful features which can then be used for example in machine learning or AI models." ;
+    sc:featureList edam:operation_3435,
+        edam:operation_3695 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "FLIRT" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://flirt.readthedocs.io/en/latest/> ;
+    sc:url "https://github.com/im-ethz/flirt" .
+
 <https://bio.tools/floorlevel-net> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3382,
         edam:topic_3474 ;
     sc:citation <https://doi.org/10.1109/TIP.2021.3096090>,
@@ -200331,7 +200992,7 @@ The fldgen package provides functions to learn the spatial, temporal, and inter-
     sc:url "https://wumengyangok.github.io/Project/FloorLevelNet" .
 
 <https://bio.tools/flora-incognita> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0637,
         edam:topic_0780,
         edam:topic_3382,
@@ -200344,7 +201005,7 @@ The fldgen package provides functions to learn the spatial, temporal, and inter-
     sc:url "https://www.floraincognita.com" .
 
 <https://bio.tools/floreada> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3934 ;
     sc:description "Floreada is a free web-based tool for simple flow cytometry analysis.  It includes all basic capabilities - manual gates, manual compensation, dot plots, histograms, overlays, and basic automatic clustering. It is available on any platform with a web browser, including Windows, Mac, Linux, as well as phones and tablets." ;
@@ -200358,7 +201019,7 @@ The fldgen package provides functions to learn the spatial, temporal, and inter-
     sc:url "https://floreada.io" .
 
 <https://bio.tools/floremi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_2229 ;
     sc:citation <https://doi.org/10.1002/cyto.a.22734> ;
@@ -200374,7 +201035,7 @@ The fldgen package provides functions to learn the spatial, temporal, and inter-
     sc:url "https://github.com/SofieVG/FloReMi" .
 
 <https://bio.tools/floritaly> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0780,
@@ -200390,7 +201051,7 @@ The fldgen package provides functions to learn the spatial, temporal, and inter-
     sc:url "http://dryades.units.it/floritaly" .
 
 <https://bio.tools/floss> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3053 ;
@@ -200407,7 +201068,7 @@ The fldgen package provides functions to learn the spatial, temporal, and inter-
     sc:url "http://faculty.washington.edu/browning/floss/floss.htm" .
 
 <https://bio.tools/flow-cytometry-data-reader-visualization> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3374,
         edam:topic_3934 ;
@@ -200424,7 +201085,7 @@ The fldgen package provides functions to learn the spatial, temporal, and inter-
     biotools:primaryContact "Robert Henson" .
 
 <https://bio.tools/flowDiv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_0769,
@@ -200446,7 +201107,7 @@ The fldgen package provides functions to learn the spatial, temporal, and inter-
     biotools:primaryContact "Bruno M.S. Wanderley" .
 
 <https://bio.tools/flowEMMi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -200469,7 +201130,7 @@ The fldgen package provides functions to learn the spatial, temporal, and inter-
     sc:url "http://www.bioinf.uni-leipzig.de/Software/flowEMMi/" .
 
 <https://bio.tools/flowai> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3572 ;
@@ -200487,7 +201148,7 @@ The fldgen package provides functions to learn the spatial, temporal, and inter-
     biotools:primaryContact "Gianni Monaco" .
 
 <https://bio.tools/flowand> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_2229 ;
     sc:citation <https://doi.org/10.4172/jpb.1000197> ;
@@ -200504,18 +201165,18 @@ The fldgen package provides functions to learn the spatial, temporal, and inter-
 
 <https://bio.tools/flowbeads> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3108" ;
-            sc:name "Experimental measurement" ;
-            sc:sameAs "http://edamontology.org/data_3108" ] ;
+            sc:additionalType "http://edamontology.org/data_3108" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Experimental measurement" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ],
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Plot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3071,
@@ -200538,22 +201199,22 @@ The fldgen package provides functions to learn the spatial, temporal, and inter-
 
 <https://bio.tools/flowbin> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3108" ;
-            sc:name "Experimental measurement" ;
-            sc:sameAs "http://edamontology.org/data_3108" ] ;
+            sc:additionalType "http://edamontology.org/data_3108" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Experimental measurement" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ],
+            sc:additionalType "http://edamontology.org/data_1636" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Heat map" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1636" ;
-            sc:name "Heat map" ;
-            sc:sameAs "http://edamontology.org/data_1636" ],
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3071,
@@ -200575,7 +201236,7 @@ The fldgen package provides functions to learn the spatial, temporal, and inter-
     biotools:primaryContact "Kieran O'Neill" .
 
 <https://bio.tools/flowcal> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2229 ;
@@ -200595,22 +201256,22 @@ The fldgen package provides functions to learn the spatial, temporal, and inter-
 
 <https://bio.tools/flowcatchr> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3449" ;
-            sc:name "Cell migration track image" ;
-            sc:sameAs "http://edamontology.org/data_3449" ] ;
+            sc:additionalType "http://edamontology.org/data_3449" ;
+            sc:encodingFormat "http://edamontology.org/format_3591" ;
+            sc:name "Cell migration track image" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ],
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Plot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3449" ;
-            sc:name "Cell migration track image" ;
-            sc:sameAs "http://edamontology.org/data_3449" ],
+            sc:additionalType "http://edamontology.org/data_3449" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Cell migration track image" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -200630,18 +201291,18 @@ The fldgen package provides functions to learn the spatial, temporal, and inter-
 
 <https://bio.tools/flowchic> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3108" ;
-            sc:name "Experimental measurement" ;
-            sc:sameAs "http://edamontology.org/data_3108" ] ;
+            sc:additionalType "http://edamontology.org/data_3108" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Experimental measurement" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ],
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Plot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1772" ;
-            sc:name "Score" ;
-            sc:sameAs "http://edamontology.org/data_1772" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1772" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Score" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3301,
@@ -200663,7 +201324,7 @@ The fldgen package provides functions to learn the spatial, temporal, and inter-
     biotools:primaryContact "Author: Joachim Schumann" .
 
 <https://bio.tools/flowcl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2229 ;
@@ -200681,7 +201342,7 @@ The fldgen package provides functions to learn the spatial, temporal, and inter-
     biotools:primaryContact "Justin Meskas" .
 
 <https://bio.tools/flowclean> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2229 ;
@@ -200702,7 +201363,7 @@ The fldgen package provides functions to learn the spatial, temporal, and inter-
     biotools:primaryContact "Kipper Fletez-Brant" .
 
 <https://bio.tools/flowclust> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2229 ;
@@ -200723,18 +201384,18 @@ The fldgen package provides functions to learn the spatial, temporal, and inter-
 
 <https://bio.tools/flowcore> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3108" ;
-            sc:name "Experimental measurement" ;
-            sc:sameAs "http://edamontology.org/data_3108" ] ;
+            sc:additionalType "http://edamontology.org/data_3108" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Experimental measurement" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ],
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3297,
@@ -200756,7 +201417,7 @@ The fldgen package provides functions to learn the spatial, temporal, and inter-
     biotools:primaryContact "M.Jiang" .
 
 <https://bio.tools/flowcut> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3077,
         edam:topic_3934 ;
@@ -200767,22 +201428,22 @@ The fldgen package provides functions to learn the spatial, temporal, and inter-
 
 <https://bio.tools/flowcybar> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3108" ;
-            sc:name "Experimental measurement" ;
-            sc:sameAs "http://edamontology.org/data_3108" ] ;
+            sc:additionalType "http://edamontology.org/data_3108" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Experimental measurement" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1636" ;
-            sc:name "Heat map" ;
-            sc:sameAs "http://edamontology.org/data_1636" ],
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ],
+            sc:additionalType "http://edamontology.org/data_1636" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Heat map" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3071,
@@ -200805,7 +201466,7 @@ The fldgen package provides functions to learn the spatial, temporal, and inter-
     biotools:primaryContact "Joachim Schumann" .
 
 <https://bio.tools/flowdensity> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2229 ;
@@ -200823,7 +201484,7 @@ The fldgen package provides functions to learn the spatial, temporal, and inter-
     biotools:primaryContact "Mehrnoush Malek" .
 
 <https://bio.tools/flower> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation "pubmed:21330287" ;
@@ -200837,7 +201498,7 @@ The fldgen package provides functions to learn the spatial, temporal, and inter-
     biotools:primaryContact "Ketil Malde" .
 
 <https://bio.tools/flowerpower> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -200853,22 +201514,22 @@ The fldgen package provides functions to learn the spatial, temporal, and inter-
 
 <https://bio.tools/flowfit> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3108" ;
-            sc:name "Experimental measurement" ;
-            sc:sameAs "http://edamontology.org/data_3108" ] ;
+            sc:additionalType "http://edamontology.org/data_3108" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Experimental measurement" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ],
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Plot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1772" ;
-            sc:name "Score" ;
-            sc:sameAs "http://edamontology.org/data_1772" ],
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1772" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Score" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3071,
@@ -200891,18 +201552,18 @@ The fldgen package provides functions to learn the spatial, temporal, and inter-
 
 <https://bio.tools/flowfp> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3108" ;
-            sc:name "Experimental measurement" ;
-            sc:sameAs "http://edamontology.org/data_3108" ] ;
+            sc:additionalType "http://edamontology.org/data_3108" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Experimental measurement" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ],
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2269,
@@ -200926,7 +201587,7 @@ The fldgen package provides functions to learn the spatial, temporal, and inter-
     biotools:primaryContact "Herb Holyst" .
 
 <https://bio.tools/flowgatenist> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_2229,
@@ -200941,7 +201602,7 @@ The fldgen package provides functions to learn the spatial, temporal, and inter-
     biotools:primaryContact <https://orcid.org/0000-0002-7790-218X> .
 
 <https://bio.tools/flowgrid> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3170,
@@ -200958,8 +201619,32 @@ The fldgen package provides functions to learn the spatial, temporal, and inter-
         "Windows" ;
     sc:url "https://github.com/holab-hku/FlowGrid" .
 
+<https://bio.tools/flowkit> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0769,
+        edam:topic_0804,
+        edam:topic_3400,
+        edam:topic_3474,
+        edam:topic_3934 ;
+    sc:citation <https://doi.org/10.3389/FIMMU.2021.768541>,
+        "pmcid:PMC8602902",
+        "pubmed:34804056" ;
+    sc:description "A Python Toolkit for Integrated Manual and Automated Cytometry Analysis Workflows." ;
+    sc:featureList edam:operation_2422,
+        edam:operation_2940,
+        edam:operation_3799 ;
+    sc:isAccessibleForFree true ;
+    sc:license "BSD-3-Clause" ;
+    sc:name "FlowKit" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://flowkit.readthedocs.io/en/latest/?badge=latest> ;
+    sc:url "https://github.com/whitews/FlowKit" .
+
 <https://bio.tools/flowlearn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3056,
@@ -200976,7 +201661,7 @@ The fldgen package provides functions to learn the spatial, temporal, and inter-
     biotools:primaryContact "Markus Lux" .
 
 <https://bio.tools/flowmap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2229 ;
@@ -200994,7 +201679,7 @@ The fldgen package provides functions to learn the spatial, temporal, and inter-
     biotools:primaryContact "Chiaowen Joyce Hsiao" .
 
 <https://bio.tools/flowmapr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_2259,
@@ -201015,7 +201700,7 @@ It is a graph-based, force-directed layout algorithm for trajectory mapping in s
     sc:url "https://github.com/zunderlab/FLOWMAP/" .
 
 <https://bio.tools/flowmatch> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2229 ;
@@ -201033,7 +201718,7 @@ It is a graph-based, force-directed layout algorithm for trajectory mapping in s
     biotools:primaryContact "Ariful Azad" .
 
 <https://bio.tools/flowmeans> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2229 ;
@@ -201051,7 +201736,7 @@ It is a graph-based, force-directed layout algorithm for trajectory mapping in s
     biotools:primaryContact "Nima Aghaeepour" .
 
 <https://bio.tools/flowmerge> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2229 ;
@@ -201069,7 +201754,7 @@ It is a graph-based, force-directed layout algorithm for trajectory mapping in s
     biotools:primaryContact "Greg Finak" .
 
 <https://bio.tools/flowpeaks> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2229 ;
@@ -201090,7 +201775,7 @@ It is a graph-based, force-directed layout algorithm for trajectory mapping in s
     biotools:primaryContact "Yongchao Ge" .
 
 <https://bio.tools/flowploidy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2229 ;
@@ -201109,22 +201794,22 @@ It is a graph-based, force-directed layout algorithm for trajectory mapping in s
 
 <https://bio.tools/flowplots> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ],
+            sc:additionalType "http://edamontology.org/data_3108" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Experimental measurement" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3108" ;
-            sc:name "Experimental measurement" ;
-            sc:sameAs "http://edamontology.org/data_3108" ] ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Report" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ],
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Plot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -201148,18 +201833,18 @@ It is a graph-based, force-directed layout algorithm for trajectory mapping in s
 
 <https://bio.tools/flowq> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3108" ;
-            sc:name "Experimental measurement" ;
-            sc:sameAs "http://edamontology.org/data_3108" ] ;
+            sc:additionalType "http://edamontology.org/data_3108" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Experimental measurement" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ],
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_3508" ;
+            sc:name "Report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3508" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3047,
@@ -201178,7 +201863,7 @@ It is a graph-based, force-directed layout algorithm for trajectory mapping in s
     biotools:primaryContact "Mike Jiang" .
 
 <https://bio.tools/flowqb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2229 ;
@@ -201196,7 +201881,7 @@ It is a graph-based, force-directed layout algorithm for trajectory mapping in s
     biotools:primaryContact "Josef Spidlen" .
 
 <https://bio.tools/flowrepositoryr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2229 ;
@@ -201215,7 +201900,7 @@ It is a graph-based, force-directed layout algorithm for trajectory mapping in s
     biotools:primaryContact "Josef Spidlen" .
 
 <https://bio.tools/flowscatt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Suite" ;
     sc:applicationSubCategory edam:topic_0108,
@@ -201230,10 +201915,10 @@ It is a graph-based, force-directed layout algorithm for trajectory mapping in s
 
 <https://bio.tools/flowsim> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3047 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btq365>,
@@ -201252,10 +201937,9 @@ It is a graph-based, force-directed layout algorithm for trajectory mapping in s
 
 <https://bio.tools/flowsom> a sc:SoftwareApplication ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:name "Pathway or network" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_2229 ;
     sc:citation <https://doi.org/10.1002/cyto.a.22625> ;
@@ -201272,14 +201956,14 @@ It is a graph-based, force-directed layout algorithm for trajectory mapping in s
 
 <https://bio.tools/flowstats> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3108" ;
-            sc:name "Experimental measurement" ;
-            sc:sameAs "http://edamontology.org/data_3108" ] ;
+            sc:additionalType "http://edamontology.org/data_3108" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Experimental measurement" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3306,
@@ -201299,7 +201983,7 @@ It is a graph-based, force-directed layout algorithm for trajectory mapping in s
         "Mike Jiang" .
 
 <https://bio.tools/flowtime> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0204 ;
     sc:description "This package was developed for analysis of both dynamic and steady state experiments examining the function of gene regulatory networks in yeast (strain W303) expressing fluorescent reporter proteins using a BD Accuri C6 and SORP cytometers. However, the functions are for the most part general and may be adapted for analysis of other organisms using other flow cytometers." ;
@@ -201317,7 +202001,7 @@ It is a graph-based, force-directed layout algorithm for trajectory mapping in s
     biotools:primaryContact "R. Clay Wright" .
 
 <https://bio.tools/flowtrans> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2229 ;
@@ -201337,7 +202021,7 @@ It is a graph-based, force-directed layout algorithm for trajectory mapping in s
     biotools:primaryContact "Greg Finak" .
 
 <https://bio.tools/flowtype> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0625,
@@ -201357,14 +202041,14 @@ It is a graph-based, force-directed layout algorithm for trajectory mapping in s
 
 <https://bio.tools/flowutils> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3108" ;
-            sc:name "Experimental measurement" ;
-            sc:sameAs "http://edamontology.org/data_3108" ] ;
+            sc:additionalType "http://edamontology.org/data_3108" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Experimental measurement" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3108" ;
-            sc:name "Experimental measurement" ;
-            sc:sameAs "http://edamontology.org/data_3108" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3108" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Experimental measurement" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3071,
@@ -201387,14 +202071,14 @@ It is a graph-based, force-directed layout algorithm for trajectory mapping in s
 
 <https://bio.tools/flowviz> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3108" ;
-            sc:name "Experimental measurement" ;
-            sc:sameAs "http://edamontology.org/data_3108" ] ;
+            sc:additionalType "http://edamontology.org/data_3108" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Experimental measurement" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -201414,22 +202098,22 @@ It is a graph-based, force-directed layout algorithm for trajectory mapping in s
 
 <https://bio.tools/flowvs> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Gene expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ],
+            sc:additionalType "http://edamontology.org/data_3108" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Experimental measurement" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3108" ;
-            sc:name "Experimental measurement" ;
-            sc:sameAs "http://edamontology.org/data_3108" ] ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Gene expression data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ],
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2269,
@@ -201450,7 +202134,7 @@ It is a graph-based, force-directed layout algorithm for trajectory mapping in s
     biotools:primaryContact "Ariful Azad" .
 
 <https://bio.tools/flowworkspace> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2229 ;
@@ -201468,8 +202152,20 @@ It is a graph-based, force-directed layout algorithm for trajectory mapping in s
     biotools:primaryContact "Greg Finak",
         "Mike Jiang" .
 
+<https://bio.tools/flt> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:citation <https://doi.org/10.1109/TNNLS.2022.3152581>,
+        "pubmed:35316193" ;
+    sc:description "Classical federated learning approaches incur significant performance degradation in the presence of non-IID client data." ;
+    sc:featureList edam:operation_3432,
+        edam:operation_3436 ;
+    sc:license "Not licensed" ;
+    sc:name "FLT" ;
+    sc:url "https://github.com/hjraad/FLT/" .
+
 <https://bio.tools/flt3-itd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0199,
         edam:topic_3168,
@@ -201488,7 +202184,7 @@ It is a graph-based, force-directed layout algorithm for trajectory mapping in s
         "Sujun Gao" .
 
 <https://bio.tools/flu-model> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344 ;
@@ -201503,7 +202199,7 @@ It is a graph-based, force-directed layout algorithm for trajectory mapping in s
     biotools:primaryContact "Leonardo" .
 
 <https://bio.tools/flu-splicing> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0749,
@@ -201526,7 +202222,7 @@ These scripts allow to launch a local version of the Shiny web-interface to expl
     sc:url "https://github.com/cbenoitp/flu-splicing" .
 
 <https://bio.tools/fluconvert-iniflu> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0781,
@@ -201546,14 +202242,13 @@ These scripts allow to launch a local version of the Shiny web-interface to expl
 
 <https://bio.tools/fluevidencesynthesis> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2042" ;
-            sc:name "Evidence" ;
-            sc:sameAs "http://edamontology.org/data_2042" ] ;
+            sc:additionalType "http://edamontology.org/data_2042" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Evidence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0781,
         edam:topic_2269,
@@ -201574,7 +202269,7 @@ These scripts allow to launch a local version of the Shiny web-interface to expl
     biotools:primaryContact "Edwin van Leeuwen" .
 
 <https://bio.tools/fluff> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0797,
@@ -201592,7 +202287,7 @@ These scripts allow to launch a local version of the Shiny web-interface to expl
     biotools:primaryContact <http://orcid.org/0000-0002-0411-3219> .
 
 <https://bio.tools/flugenome> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0781,
@@ -201606,7 +202301,7 @@ These scripts allow to launch a local version of the Shiny web-interface to expl
     sc:url "http://www.flugenome.org/" .
 
 <https://bio.tools/fluorender> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_3382 ;
@@ -201620,7 +202315,7 @@ These scripts allow to launch a local version of the Shiny web-interface to expl
     sc:url "http://www.sci.utah.edu/software/fluorender.html" .
 
 <https://bio.tools/fluorescence-tools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0176,
         edam:topic_0593,
@@ -201639,7 +202334,7 @@ These scripts allow to launch a local version of the Shiny web-interface to expl
     sc:url "https://github.com/Fluorescence-Tools" .
 
 <https://bio.tools/fluorescenceviewer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:description "FluorescenceViewer.m is a short script for viewing fluorescence spectra. It requires the folder containing fluorescent spectra to be in the same directory as the .m file." ;
     sc:featureList edam:operation_3214 ;
@@ -201653,7 +202348,7 @@ These scripts allow to launch a local version of the Shiny web-interface to expl
     biotools:primaryContact "Caleb Stoltzfus" .
 
 <https://bio.tools/fluorescent-cells-counting> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3304,
@@ -201671,7 +202366,7 @@ These scripts allow to launch a local version of the Shiny web-interface to expl
     biotools:primaryContact "EMC_solver" .
 
 <https://bio.tools/fluorescent_robotic_imager> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_3297,
@@ -201691,7 +202386,7 @@ Code and .obj files for construction of a robotic imager capable of using visibl
     sc:url "https://github.com/dakota0064/Fluorescent_Robotic_Imager" .
 
 <https://bio.tools/fluphenotype> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0621,
@@ -201704,8 +202399,21 @@ Code and .obj files for construction of a robotic imager capable of using visibl
     sc:name "FluPhenotype" ;
     sc:url "http://www.computationalbiology.cn:18888/IVEW" .
 
+<https://bio.tools/fluspred> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:description "FluSPred(Flu Spread Prediction) is a machine learning based tool to predict the human associated Influenza A virus strains with the help of its protein and genome sequences," ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "fluspred" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/fluspred/index.html> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/fluspred/index.html" .
+
 <https://bio.tools/flute> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0218,
@@ -201721,7 +202429,7 @@ Code and .obj files for construction of a robotic imager capable of using visibl
     sc:url "https://bitbucket.org/biodesignlab/flute" .
 
 <https://bio.tools/flux> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_3170 ;
     sc:description "FluxCapacitor s a computer program to predict splice form abundancies from reads of an RNA-seq experiment.  FluxSimulator can generate simulated data for testing RNA-seq pipelines" ;
@@ -201731,7 +202439,7 @@ Code and .obj files for construction of a robotic imager capable of using visibl
     biotools:primaryContact "Flux Support" .
 
 <https://bio.tools/fluxer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0602,
@@ -201751,7 +202459,7 @@ Code and .obj files for construction of a robotic imager capable of using visibl
     sc:url "https://fluxer.umbc.edu" .
 
 <https://bio.tools/fluxmap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_2259 ;
@@ -201766,7 +202474,7 @@ Code and .obj files for construction of a robotic imager capable of using visibl
     sc:url "https://immersive-analytics.infotech.monash.edu/vanted/addons/fluxmap/" .
 
 <https://bio.tools/fluxmodecalculator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2259 ;
@@ -201781,7 +202489,7 @@ Code and .obj files for construction of a robotic imager capable of using visibl
     sc:url "https://www.lumc.nl/org/humane-genetica/medewerkers/jan-bert-van-klinken" .
 
 <https://bio.tools/fluxpyt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_3360,
@@ -201798,7 +202506,7 @@ Code and .obj files for construction of a robotic imager capable of using visibl
     biotools:primaryContact "Shireesh Srivastava" .
 
 <https://bio.tools/fluxviz> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0602,
@@ -201814,7 +202522,7 @@ Code and .obj files for construction of a robotic imager capable of using visibl
     sc:url "http://apps.cytoscape.org/apps/fluxviz" .
 
 <https://bio.tools/flybase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0622,
@@ -201836,7 +202544,7 @@ Code and .obj files for construction of a robotic imager capable of using visibl
     biotools:primaryContact "Jim Thurmond" .
 
 <https://bio.tools/flybrainlab> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0218,
@@ -201852,7 +202560,7 @@ Code and .obj files for construction of a robotic imager capable of using visibl
     sc:url "https://github.com/FlyBrainLab/FlyBrainLab" .
 
 <https://bio.tools/flyfactorsurvey> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0749,
@@ -201876,26 +202584,21 @@ Code and .obj files for construction of a robotic imager capable of using visibl
 
 <https://bio.tools/flymine> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ],
+            sc:additionalType "http://edamontology.org/data_2353" ;
+            sc:name "Ontology data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2353" ;
-            sc:name "Ontology data" ;
-            sc:sameAs "http://edamontology.org/data_2353" ] ;
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:name "Sequence features" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3753" ;
-            sc:name "Over-representation data" ;
-            sc:sameAs "http://edamontology.org/data_3753" ],
+            sc:additionalType "http://edamontology.org/data_3786" ;
+            sc:name "Query script" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ],
+            sc:additionalType "http://edamontology.org/data_3753" ;
+            sc:name "Over-representation data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3786" ;
-            sc:name "Query script" ;
-            sc:sameAs "http://edamontology.org/data_3786" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:name "Sequence features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application",
         "Web service" ;
@@ -201920,7 +202623,7 @@ Code and .obj files for construction of a robotic imager capable of using visibl
     sc:url "https://flymine.org/flymine" .
 
 <https://bio.tools/flyode> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0602,
@@ -201941,7 +202644,7 @@ Code and .obj files for construction of a robotic imager capable of using visibl
         <http://orcid.org/0000-0002-7223-8291> .
 
 <https://bio.tools/flype> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0208,
         edam:topic_3063,
@@ -201957,7 +202660,7 @@ Code and .obj files for construction of a robotic imager capable of using visibl
     sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=33270363" .
 
 <https://bio.tools/flyphonedb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0621,
@@ -201977,7 +202680,7 @@ Code and .obj files for construction of a robotic imager capable of using visibl
     sc:url "http://www.flyrnai.org/tools/fly_phone" .
 
 <https://bio.tools/flyrnai> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0611,
@@ -201999,7 +202702,7 @@ Code and .obj files for construction of a robotic imager capable of using visibl
     biotools:primaryContact "Bug report form" .
 
 <https://bio.tools/flyterminalia> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0602,
@@ -202016,7 +202719,7 @@ Code and .obj files for construction of a robotic imager capable of using visibl
     sc:url "https://flyterminalia.pitt.edu/" .
 
 <https://bio.tools/flytf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0203,
@@ -202035,8 +202738,33 @@ Code and .obj files for construction of a robotic imager capable of using visibl
     sc:url "http://www.mrc-lmb.cam.ac.uk/genomes/FlyTF/old_index.html" ;
     biotools:primaryContact "Boris Adryan" .
 
+<https://bio.tools/flywire> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0611,
+        edam:topic_0621,
+        edam:topic_3304,
+        edam:topic_3474,
+        edam:topic_3500 ;
+    sc:citation <https://doi.org/10.1038/s41592-021-01330-0>,
+        "pmcid:PMC8903166",
+        "pubmed:34949809" ;
+    sc:description "FlyWire is a game-like platform open to all, to help crowdsource the first complete wiring diagram of a centralized brain. In a fruit fly brain sliced and imaged by electron microscopy (Zheng et al. 2018), we identified pieces of neurons by artificial intelligence. Players search for the right pieces and put together beautiful 3D neurons that advance science's understanding of brain circuits." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3096,
+        edam:operation_3450 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Apache-2.0" ;
+    sc:name "FlyWire" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://docs.google.com/document/d/1_JjT2oJRi2o077TKhug4b56WYFTUKzGIxl0yzfSBXuk/edit>,
+        <https://drive.google.com/file/d/1GMu3YkiGGnvyCvAYOs1AjA_Eum2oB-3V/view> ;
+    sc:url "http://flywire.ai" .
+
 <https://bio.tools/fm-index> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0218,
@@ -202056,7 +202784,7 @@ A fast, AVX2 accelerated FM-index library that utilizes windows of SIMD register
     sc:url "https://github.com/TravisWheelerLab/AvxWindowFmIndex" .
 
 <https://bio.tools/fm-track> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3382 ;
@@ -202073,7 +202801,7 @@ A fast, AVX2 accelerated FM-index library that utilizes windows of SIMD register
     sc:url "https://github.com/elejeune11/FM-Track" .
 
 <https://bio.tools/fmap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0176,
@@ -202091,7 +202819,7 @@ A fast, AVX2 accelerated FM-index library that utilizes windows of SIMD register
     sc:url "https://github.com/limresgrp/FMAP_v1" .
 
 <https://bio.tools/fmap-membrane> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0153,
         edam:topic_0154,
@@ -202110,26 +202838,26 @@ A fast, AVX2 accelerated FM-index library that utilizes windows of SIMD register
 
 <https://bio.tools/fmcsr> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1463" ;
-            sc:name "Small molecule structure" ;
-            sc:sameAs "http://edamontology.org/data_1463" ] ;
+            sc:additionalType "http://edamontology.org/data_1463" ;
+            sc:encodingFormat "http://edamontology.org/format_2033" ;
+            sc:name "Small molecule structure" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2856" ;
-            sc:name "Structural distance matrix" ;
-            sc:sameAs "http://edamontology.org/data_2856" ],
+            sc:additionalType "http://edamontology.org/data_2856" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Structural distance matrix" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2080" ;
-            sc:name "Database search results" ;
-            sc:sameAs "http://edamontology.org/data_2080" ],
+            sc:additionalType "http://edamontology.org/data_1712" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Chemical structure image" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ],
+            sc:additionalType "http://edamontology.org/data_2080" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Database search results" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1712" ;
-            sc:name "Chemical structure image" ;
-            sc:sameAs "http://edamontology.org/data_1712" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -202149,8 +202877,30 @@ A fast, AVX2 accelerated FM-index library that utilizes windows of SIMD register
     sc:url "http://bioconductor.org/packages/release/bioc/html/fmcsR.html" ;
     biotools:primaryContact "Thomas Girke" .
 
+<https://bio.tools/fmixfn> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0199,
+        edam:topic_0625,
+        edam:topic_3796,
+        edam:topic_3810 ;
+    sc:citation <https://doi.org/10.3389/FGENE.2021.721600>,
+        "pmcid:PMC8637923",
+        "pubmed:34868200" ;
+    sc:description "A Fast Big Data-Oriented Genomic Selection Model Based on an Iterative Conditional Expectation algorithm." ;
+    sc:featureList edam:operation_0484,
+        edam:operation_3435 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "FMixFN" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://github.com/xuwenwu24/FMixFN/blob/v1.1.0/User%20Manual.docx> ;
+    sc:url "https://zenodo.org/record/5560913" .
+
 <https://bio.tools/fmm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0602,
@@ -202168,7 +202918,7 @@ A fast, AVX2 accelerated FM-index library that utilizes windows of SIMD register
     biotools:primaryContact "FMM Support" .
 
 <https://bio.tools/fmri> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3067,
         edam:topic_3300,
         edam:topic_3444 ;
@@ -202184,7 +202934,7 @@ Magnetic resonance imaging (MRI) data of the brains of 28 healthy volunteers, fo
     sc:url "https://dataverse.nl/dataverse/rt-me-fmri" .
 
 <https://bio.tools/fmriprep> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3304,
@@ -202203,8 +202953,32 @@ Magnetic resonance imaging (MRI) data of the brains of 28 healthy volunteers, fo
     sc:softwareHelp <http://fmriprep.org> ;
     sc:url "https://github.com/poldracklab/fmriprep" .
 
+<https://bio.tools/fmsclusterfinder> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:name "Protein sequence" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:name "Nucleic acid sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0160,
+        edam:topic_0203,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.1101/2022.01.23.474238> ;
+    sc:description "A new tool for detection and identification of clusters of sequential motifs with varying characteristics inside genomic sequences." ;
+    sc:featureList edam:operation_0239,
+        edam:operation_2421,
+        edam:operation_3432 ;
+    sc:isAccessibleForFree true ;
+    sc:name "FMSClusterFinder" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://fmsclusterfinder.fmsbiog.com" .
+
 <https://bio.tools/fmtp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654 ;
@@ -202218,7 +202992,7 @@ Magnetic resonance imaging (MRI) data of the brains of 28 healthy volunteers, fo
     sc:url "http://www.mscs.mu.edu/~bozdag/FMTP/index.html" .
 
 <https://bio.tools/fnbtools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_3053 ;
@@ -202236,7 +203010,7 @@ Magnetic resonance imaging (MRI) data of the brains of 28 healthy volunteers, fo
         "Liang Sun" .
 
 <https://bio.tools/fngwas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_0804,
@@ -202261,7 +203035,7 @@ Genome-wide association studies (GWASs) have unraveled thousands of susceptible
     sc:url "http://fngwas.online/" .
 
 <https://bio.tools/fns> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3304,
@@ -202284,7 +203058,7 @@ Genome-wide association studies (GWASs) have unraveled thousands of susceptible
     sc:url "http://www.fnsneuralsimulator.org" .
 
 <https://bio.tools/fnv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0077,
@@ -202302,7 +203076,7 @@ Genome-wide association studies (GWASs) have unraveled thousands of susceptible
     sc:url "http://maayanlab.net/FNV/" .
 
 <https://bio.tools/fobi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Ontology" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0154,
@@ -202320,8 +203094,30 @@ Genome-wide association studies (GWASs) have unraveled thousands of susceptible
     sc:name "FOBI" ;
     sc:url "https://github.com/pcastellanoescuder/FoodBiomarkerOntology" .
 
+<https://bio.tools/fobitoolsgui> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0089,
+        edam:topic_0154,
+        edam:topic_0602,
+        edam:topic_3172,
+        edam:topic_3390 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAB626>,
+        "pubmed:34601570" ;
+    sc:description "This package provides a set of tools for interacting with FOBI (Food-Biomarker Ontology)." ;
+    sc:featureList edam:operation_0306,
+        edam:operation_1812,
+        edam:operation_3501 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "fobitoolsGUI" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/nutrimetabolomics/fobitools" .
+
 <https://bio.tools/focal> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3071,
         edam:topic_3382 ;
@@ -202336,7 +203132,7 @@ Genome-wide association studies (GWASs) have unraveled thousands of susceptible
     sc:url "http://www.utm.utoronto.ca/milsteinlab/resources/Software/FOCAL/" .
 
 <https://bio.tools/focalcall> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -202355,7 +203151,7 @@ Genome-wide association studies (GWASs) have unraveled thousands of susceptible
     biotools:primaryContact "Oscar Krijgsman" .
 
 <https://bio.tools/focan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_2229,
@@ -202374,18 +203170,18 @@ Genome-wide association studies (GWASs) have unraveled thousands of susceptible
 
 <https://bio.tools/focus> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ],
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1872" ;
-            sc:name "Taxonomic classification" ;
-            sc:sameAs "http://edamontology.org/data_1872" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1872" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Taxonomic classification" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3174,
         edam:topic_3837 ;
@@ -202405,7 +203201,7 @@ Genome-wide association studies (GWASs) have unraveled thousands of susceptible
     sc:url "https://github.com/metageni/FOCUS" .
 
 <https://bio.tools/focus-point> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_3318 ;
@@ -202422,7 +203218,7 @@ Genome-wide association studies (GWASs) have unraveled thousands of susceptible
     sc:url "http://dwaithe.github.io/FCS_point_correlator/" .
 
 <https://bio.tools/focusedMDS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3303,
@@ -202443,8 +203239,28 @@ Genome-wide association studies (GWASs) have unraveled thousands of susceptible
     sc:url "https://github.com/anders-biostat/focusedMDS" ;
     biotools:primaryContact "Lea Urpa" .
 
+<https://bio.tools/fod-net> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_3304,
+        edam:topic_3384,
+        edam:topic_3444 ;
+    sc:citation <https://doi.org/10.1016/J.MEDIA.2022.102431>,
+        "pubmed:35397471" ;
+    sc:description "A deep learning method for fiber orientation distribution angular super resolution." ;
+    sc:featureList edam:operation_2428,
+        edam:operation_3435,
+        edam:operation_3443 ;
+    sc:isAccessibleForFree true ;
+    sc:license "CC-BY-NC-SA-4.0" ;
+    sc:name "FOD-Net" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/ruizengalways/FOD-Net" .
+
 <https://bio.tools/fodis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0130 ;
@@ -202462,7 +203278,7 @@ Genome-wide association studies (GWASs) have unraveled thousands of susceptible
     biotools:primaryContact "Nicola Galvanetto" .
 
 <https://bio.tools/fog> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0632,
@@ -202479,24 +203295,8 @@ Genome-wide association studies (GWASs) have unraveled thousands of susceptible
     sc:softwareVersion "1.0" ;
     sc:url "http://www.bioinformatics.org/webfog/wiki/" .
 
-<https://bio.tools/fog_robotics> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0621,
-        edam:topic_3316,
-        edam:topic_3382 ;
-    sc:citation <https://doi.org/10.20944/PREPRINTS201910.0155.V1> ;
-    sc:description """A Function-as-a-Service Based Fog Robotic System for Cognitive Robots.
-
-"Fog Robotics is a branch of networked robots that distributes storage, compute and networking resources between the Cloud and the Edge in a federated manner”.
-
-Fog Robotics enable robots and IoT devices in homes and warehouses to leverage upon nearby Edge resources as well as distant Cloud data centers. Administrative boundaries of resource ownership restrict control of data within domains of trust. The term `Cloud Robotics' indicates the use of network resources at the center of the network (or `Cloud'), while `Fog Robotics' involves the use of networked resources along the Cloud/Edge continuum (or `Fog').
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'cloud', 'fog', 'fog robot', 'robot'""" ;
-    sc:featureList edam:operation_2422 ;
-    sc:name "fog robotics" ;
-    sc:url "https://sites.google.com/view/fogrobotics" .
-
 <https://bio.tools/fogframe> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_3179,
         edam:topic_3382,
@@ -202513,7 +203313,7 @@ Fog Robotics enable robots and IoT devices in homes and warehouses to leverage u
     sc:url "https://github.com/softls/FogFrame-2.0" .
 
 <https://bio.tools/fogsaa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0078,
@@ -202527,7 +203327,7 @@ Fog Robotics enable robots and IoT devices in homes and warehouses to leverage u
     sc:url "http://www.isical.ac.in/~bioinfo_miu/FOGSAA.htm" .
 
 <https://bio.tools/fold-em> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0166,
         edam:topic_0611,
@@ -202543,7 +203343,7 @@ Fog Robotics enable robots and IoT devices in homes and warehouses to leverage u
     sc:url "http://ai.stanford.edu/~mitul/foldEM/" .
 
 <https://bio.tools/fold-rate> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0130,
@@ -202568,7 +203368,7 @@ Fog Robotics enable robots and IoT devices in homes and warehouses to leverage u
     biotools:primaryContact "MM Gromiha" .
 
 <https://bio.tools/fold2bloch> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0593,
         edam:topic_3314 ;
     sc:citation <https://doi.org/10.1063/1.5143061>,
@@ -202581,7 +203381,7 @@ Unfolding of first-principle electronic band structure obtained with WIEN2k DFT-
     sc:url "https://github.com/rubel75/fold2Bloch-Wien2k/" .
 
 <https://bio.tools/fold2seq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0130,
         edam:topic_0736 ;
@@ -202595,7 +203395,7 @@ Unfolding of first-principle electronic band structure obtained with WIEN2k DFT-
     sc:url "https://github.com/IBM/fold2seq" .
 
 <https://bio.tools/foldalign> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0097,
@@ -202616,7 +203416,7 @@ Unfolding of first-principle electronic band structure obtained with WIEN2k DFT-
     biotools:primaryContact "RTH Support" .
 
 <https://bio.tools/foldgo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0204,
@@ -202632,7 +203432,7 @@ Unfolding of first-principle electronic band structure obtained with WIEN2k DFT-
     sc:url "https://webfsgor.sysbio.cytogen.ru/" .
 
 <https://bio.tools/foldhandedness> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0092,
@@ -202648,8 +203448,31 @@ Unfolding of first-principle electronic band structure obtained with WIEN2k DFT-
     sc:softwareHelp <http://bioinfo.protres.ru/foldhandedness/> ;
     sc:url "http://bioinfo.protres.ru/foldhandedness/" .
 
+<https://bio.tools/foldhsphere> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0082,
+        edam:topic_0130,
+        edam:topic_0736,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1186/S12859-021-04419-7>,
+        "pmcid:PMC8507389",
+        "pubmed:34641786" ;
+    sc:description "Deep hyperspherical embeddings for protein fold recognition." ;
+    sc:featureList edam:operation_0267,
+        edam:operation_0303,
+        edam:operation_2415,
+        edam:operation_2475 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "FoldHSphere" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://sigmat.ugr.es/~amelia/FoldHSphere" .
+
 <https://bio.tools/foldit_standalone> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_2275,
@@ -202666,7 +203489,7 @@ Unfolding of first-principle electronic band structure obtained with WIEN2k DFT-
     biotools:primaryContact "Seth Cooper" .
 
 <https://bio.tools/foldminer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0154,
@@ -202686,7 +203509,7 @@ Unfolding of first-principle electronic band structure obtained with WIEN2k DFT-
     biotools:primaryContact "Jessica Ebert" .
 
 <https://bio.tools/foldnucleus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0099,
@@ -202703,7 +203526,7 @@ Unfolding of first-principle electronic band structure obtained with WIEN2k DFT-
     sc:url "http://bioinfo.protres.ru/foldnucleus/" .
 
 <https://bio.tools/foldrec-c2c> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0130,
@@ -202722,14 +203545,13 @@ Unfolding of first-principle electronic band structure obtained with WIEN2k DFT-
 
 <https://bio.tools/foldseek> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1467" ;
-            sc:name "Protein chain" ;
-            sc:sameAs "http://edamontology.org/data_1467" ] ;
+            sc:additionalType "http://edamontology.org/data_1467" ;
+            sc:encodingFormat "http://edamontology.org/format_1477" ;
+            sc:name "Protein chain" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1481" ;
-            sc:name "Protein structure alignment" ;
-            sc:sameAs "http://edamontology.org/data_1481" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1481" ;
+            sc:name "Protein structure alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078 ;
     sc:citation <https://doi.org/10.1101/2022.02.07.479398> ;
@@ -202743,7 +203565,7 @@ Unfolding of first-principle electronic band structure obtained with WIEN2k DFT-
     sc:url "https://foldseek.com" .
 
 <https://bio.tools/foldtr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0091,
@@ -202765,8 +203587,21 @@ Unfolding of first-principle electronic band structure obtained with WIEN2k DFT-
         "Windows" ;
     sc:url "http://csbio.njust.edu.cn/bioinf/foldtr/" .
 
+<https://bio.tools/foldunfold> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:citation <https://doi.org/10.1093/bioinformatics/btl504>,
+        "pubmed:17021161" ;
+    sc:description "FoldUnfold is a web server that detects disordered regions in a protein sequence." ;
+    sc:isAccessibleForFree true ;
+    sc:name "FoldUnfold" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://skuld.protres.ru/~mlobanov/ogu/ogu.cgi" .
+
 <https://bio.tools/foldx> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -202793,7 +203628,7 @@ Unfolding of first-principle electronic band structure obtained with WIEN2k DFT-
         "Luis Serrano" .
 
 <https://bio.tools/foodkg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_3390,
         edam:topic_3474,
@@ -202809,7 +203644,7 @@ Unfolding of first-principle electronic band structure obtained with WIEN2k DFT-
     sc:url "https://github.com/Gharibim/FoodKG" .
 
 <https://bio.tools/footer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654,
@@ -202827,7 +203662,7 @@ Unfolding of first-principle electronic band structure obtained with WIEN2k DFT-
     biotools:primaryContact "Footer team" .
 
 <https://bio.tools/foragegrassbase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0625,
@@ -202846,7 +203681,7 @@ Unfolding of first-principle electronic band structure obtained with WIEN2k DFT-
     sc:url "http://foragegrass.org/" .
 
 <https://bio.tools/forcast> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0632,
         edam:topic_0769,
@@ -202863,7 +203698,7 @@ Unfolding of first-principle electronic band structure obtained with WIEN2k DFT-
     sc:url "https://ccmbioinfo.github.io/FORCAST" .
 
 <https://bio.tools/forcefield_ncaa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -202881,7 +203716,7 @@ Unfolding of first-principle electronic band structure obtained with WIEN2k DFT-
     sc:url "http://selene.princeton.edu/FFNCAA/" .
 
 <https://bio.tools/forcefield_ptm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0601,
@@ -202899,7 +203734,7 @@ Unfolding of first-principle electronic band structure obtained with WIEN2k DFT-
     sc:url "http://selene.princeton.edu/FFPTM/" .
 
 <https://bio.tools/foreseqs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0084,
@@ -202916,7 +203751,7 @@ Unfolding of first-principle electronic band structure obtained with WIEN2k DFT-
     sc:url "https://github.com/ddarriba/ForeSeqs" .
 
 <https://bio.tools/forestatistics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0654,
@@ -202931,8 +203766,30 @@ Unfolding of first-principle electronic band structure obtained with WIEN2k DFT-
     sc:operatingSystem "Windows" ;
     sc:url "http://zeetu.org/forestatistics.html" .
 
+<https://bio.tools/forestecology> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0610,
+        edam:topic_2269 ;
+    sc:citation <https://doi.org/10.1002/ECE3.8129>,
+        "pmcid:PMC8601886",
+        "pubmed:34824775" ;
+    sc:description "The forestecology R package for fitting and assessing neighborhood models of the effect of interspecific competition on the growth of trees." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3435,
+        edam:operation_3659 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "forestecology" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://cloud.r-project.org/web/packages/forestecology/forestecology.pdf>,
+        <https://github.com/rudeboybert/forestecology/blob/master/CODE_OF_CONDUCT.md> ;
+    sc:url "https://github.com/rudeboybert/forestecology" .
+
 <https://bio.tools/forester> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0194,
         edam:topic_0622,
@@ -202951,7 +203808,7 @@ Unfolding of first-principle electronic band structure obtained with WIEN2k DFT-
     sc:url "https://sites.google.com/site/cmzmasek/home/software/forester" .
 
 <https://bio.tools/forg3d> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0622,
@@ -202967,7 +203824,7 @@ Unfolding of first-principle electronic band structure obtained with WIEN2k DFT-
     biotools:primaryContact "Jussi Paananen" .
 
 <https://bio.tools/forge> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0625,
@@ -202984,8 +203841,33 @@ Unfolding of first-principle electronic band structure obtained with WIEN2k DFT-
     sc:softwareHelp <http://www.internationalgenome.org/forge-analysis> ;
     sc:url "http://phase3browser.1000genomes.org/Homo_sapiens/UserData/Forge" .
 
+<https://bio.tools/forge2> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Desktop application",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0160,
+        edam:topic_2885,
+        edam:topic_3168,
+        edam:topic_3173,
+        edam:topic_3517 ;
+    sc:citation <https://doi.org/10.1186/S13059-021-02560-3>,
+        "pmcid:PMC8742386",
+        "pubmed:34996498" ;
+    sc:description "FORGE2 uses an expanded atlas of cell type-specific regulatory element annotations, including DNase I hotspots, five histone mark categories and 15 hidden Markov model (HMM) chromatin states, to identify tissue- and cell type-specific signals." ;
+    sc:featureList edam:operation_3501,
+        edam:operation_3695,
+        edam:operation_3791 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "FORGE2" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareVersion "2.0" ;
+    sc:url "https://forge2.altiusinstitute.org/" .
+
 <https://bio.tools/forgenet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3361,
@@ -203002,7 +203884,7 @@ Unfolding of first-principle electronic band structure obtained with WIEN2k DFT-
     sc:url "https://github.com/yunchuankong/forgeNet" .
 
 <https://bio.tools/forgi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0099,
@@ -203025,7 +203907,7 @@ Unfolding of first-principle electronic band structure obtained with WIEN2k DFT-
     biotools:primaryContact "Bernhard C. Thiel" .
 
 <https://bio.tools/fork-seq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3127,
@@ -203043,7 +203925,7 @@ Unfolding of first-principle electronic band structure obtained with WIEN2k DFT-
     sc:url "https://www.biologie.ens.fr/~hennion/forkseq.html" .
 
 <https://bio.tools/formatomatic> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3056,
         edam:topic_3071 ;
@@ -203059,14 +203941,13 @@ Unfolding of first-principle electronic band structure obtained with WIEN2k DFT-
 
 <https://bio.tools/forna> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ] ;
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Sequence features" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -203087,7 +203968,7 @@ Unfolding of first-principle electronic band structure obtained with WIEN2k DFT-
     sc:url "http://rna.tbi.univie.ac.at/forna/" .
 
 <https://bio.tools/forum> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0634,
@@ -203105,7 +203986,7 @@ FORUM is an open knowledge network aiming at supporting metabolomics results int
     sc:url "https://forum-webapp.semantic-metabolomics.fr" .
 
 <https://bio.tools/forwsim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3053,
         edam:topic_3056,
@@ -203122,7 +204003,7 @@ FORUM is an open knowledge network aiming at supporting metabolomics results int
     sc:url "http://badri-populationgeneticsimulators.blogspot.com/" .
 
 <https://bio.tools/founder_sequences> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:citation <https://doi.org/10.1186/S13015-019-0147-6>,
         "pmcid:PMC6525415",
@@ -203139,7 +204020,7 @@ FORUM is an open knowledge network aiming at supporting metabolomics results int
     biotools:primaryContact <https://orcid.org/0000-0003-4454-1493> .
 
 <https://bio.tools/foundertracker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_2640,
@@ -203156,7 +204037,7 @@ FORUM is an open knowledge network aiming at supporting metabolomics results int
     sc:url "http://cit.ligue-cancer.net/FounderTracker/" .
 
 <https://bio.tools/foundin-pd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -203177,26 +204058,26 @@ FORUM is an open knowledge network aiming at supporting metabolomics results int
 
 <https://bio.tools/fourcseq> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ],
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence record" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1383" ;
-            sc:name "Sequence alignment (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1383" ] ;
+            sc:additionalType "http://edamontology.org/data_1383" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment (nucleic acid)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1017" ;
-            sc:name "Sequence range" ;
-            sc:sameAs "http://edamontology.org/data_1017" ],
+            sc:additionalType "http://edamontology.org/data_2955" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Sequence report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ],
+            sc:additionalType "http://edamontology.org/data_1017" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Sequence range" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2955" ;
-            sc:name "Sequence report" ;
-            sc:sameAs "http://edamontology.org/data_2955" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3168 ;
@@ -203216,7 +204097,7 @@ FORUM is an open knowledge network aiming at supporting metabolomics results int
     biotools:primaryContact "Felix A. Klein" .
 
 <https://bio.tools/fox-insight> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_2885,
@@ -203233,7 +204114,7 @@ FORUM is an open knowledge network aiming at supporting metabolomics results int
     sc:url "https://foxden.michaeljfox.org/" .
 
 <https://bio.tools/foxs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0154,
@@ -203252,20 +204133,29 @@ FORUM is an open knowledge network aiming at supporting metabolomics results int
     sc:url "http://salilab.org/foxs" ;
     biotools:primaryContact "FoXS Support" .
 
-<https://bio.tools/fp6bd> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0082,
-        edam:topic_0166,
-        edam:topic_0736 ;
-    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTZ650>,
-        "pubmed:31424530" ;
-    sc:description "> MEDIUM CONFIDENCE! | > CORRECT NAME OF TOOL COULD ALSO BE 'non-conformative', 'RosettaRemodel', 'per-structure', 'MOTIVATION:Recent' | Multi-Scale Structural Analysis of Proteins by Deep Semantic Segmentation | Semantic Segmentor for Protein Structures | A CNN for performing semantic segmantation of multi-domain protein structures | Written in Python. Main requirements are Biopython, Pytorch, Numpy, Scipy. (I use Conda since Pytorch recommends using it.)" ;
+<https://bio.tools/fpadmet> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_3314,
+        edam:topic_3375,
+        edam:topic_3407,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1186/S13321-021-00557-5>,
+        "pmcid:PMC8479898",
+        "pubmed:34583740" ;
+    sc:description "FPADMET is a compilation of molecular fingerprint-based predictive models for ADMET properties." ;
     sc:featureList edam:operation_0303,
-        edam:operation_0474 ;
-    sc:name "fp6bd" ;
-    sc:url "https://git.io/fp6bd" .
+        edam:operation_4009 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "FPADMET" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://gitlab.com/vishsoft/fpadmet" .
 
 <https://bio.tools/fpb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0654 ;
@@ -203280,7 +204170,7 @@ FORUM is an open knowledge network aiming at supporting metabolomics results int
     sc:url "http://services.appliedgenomics.org/software/fpb/" .
 
 <https://bio.tools/fpbioimage> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3383,
         edam:topic_3384,
@@ -203300,7 +204190,7 @@ FORUM is an open knowledge network aiming at supporting metabolomics results int
     biotools:primaryContact "Clemens F. Kaminski" .
 
 <https://bio.tools/fpc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
@@ -203321,7 +204211,7 @@ FORUM is an open knowledge network aiming at supporting metabolomics results int
     biotools:primaryContact "FPC Support" .
 
 <https://bio.tools/fpclass> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
@@ -203339,7 +204229,7 @@ FORUM is an open knowledge network aiming at supporting metabolomics results int
     sc:url "http://dcv.uhnres.utoronto.ca/FPCLASS/" .
 
 <https://bio.tools/fpem> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3420 ;
@@ -203355,7 +204245,7 @@ FORUM is an open knowledge network aiming at supporting metabolomics results int
     biotools:primaryContact <https://orcid.org/0000-0001-8806-5957> .
 
 <https://bio.tools/fpfilter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0622,
@@ -203370,14 +204260,15 @@ FORUM is an open knowledge network aiming at supporting metabolomics results int
     sc:url "https://github.com/yuxiangtan/FPfilter" .
 
 <https://bio.tools/fpga_perm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:citation <https://doi.org/10.1101/2022.03.11.483235> ;
     sc:description "An FPGA-accelerated implementation of GWAS permutation testing designed primarily for AWS EC2 F1 (f1.2xlarge) instances." ;
     sc:name "FPGA_perm" ;
     sc:softwareVersion "v1.0.0" ;
     sc:url "https://github.com/witseie/fpgaperm" .
 
 <https://bio.tools/fpm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3382 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btab237> ;
@@ -203389,16 +204280,32 @@ FORUM is an open knowledge network aiming at supporting metabolomics results int
     biotools:primaryContact <https://orcid.org/0000-0003-4829-8128>,
         "Piotr Zdańkowski" .
 
+<https://bio.tools/fpmvs-cag> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0749 ;
+    sc:citation <https://doi.org/10.1109/TIP.2021.3131941>,
+        "pubmed:34890327" ;
+    sc:description "Fast Parameter-free Multi-view Subspace Clustering with Consensus Anchor Guidance." ;
+    sc:featureList edam:operation_3432 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "FPMVS-CAG" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/wangsiwei2010/FPMVS-CAG" .
+
 <https://bio.tools/fpocket> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ] ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein structure" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2878" ;
-            sc:name "Protein structural motif" ;
-            sc:sameAs "http://edamontology.org/data_2878" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2878" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein structural motif" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0166 ;
     sc:citation "pubmed:19486540",
@@ -203414,7 +204321,7 @@ FORUM is an open knowledge network aiming at supporting metabolomics results int
     biotools:primaryContact <https://orcid.org/0000-0003-1033-9895> .
 
 <https://bio.tools/fpop> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0081,
@@ -203431,7 +204338,7 @@ FORUM is an open knowledge network aiming at supporting metabolomics results int
     sc:url "http://pocket.uchicago.edu/fpop/" .
 
 <https://bio.tools/fpsac> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3293 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btt527>,
@@ -203447,7 +204354,7 @@ FORUM is an open knowledge network aiming at supporting metabolomics results int
     sc:url "http://paleogenomics.irmacs.sfu.ca/FPSAC/index.html" .
 
 <https://bio.tools/fqc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3168,
@@ -203465,34 +204372,34 @@ FORUM is an open knowledge network aiming at supporting metabolomics results int
 
 <https://bio.tools/fqcleaner> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1932" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1932" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1932" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3168,
@@ -203509,18 +204416,18 @@ FORUM is an open knowledge network aiming at supporting metabolomics results int
 
 <https://bio.tools/fqconvert> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1933" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1932" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:citation <https://doi.org/10.1093/nar/gkw343>,
@@ -203537,22 +204444,22 @@ FORUM is an open knowledge network aiming at supporting metabolomics results int
 
 <https://bio.tools/fqduplicate> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1932" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1932" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1932" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0080,
@@ -203570,34 +204477,34 @@ FORUM is an open knowledge network aiming at supporting metabolomics results int
 
 <https://bio.tools/fqextract> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1932" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1932" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1932" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1931" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1931" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1931" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3077 ;
@@ -203612,34 +204519,34 @@ FORUM is an open knowledge network aiming at supporting metabolomics results int
 
 <https://bio.tools/fqquality> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1932" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1932" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1932" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3168,
@@ -203655,14 +204562,14 @@ FORUM is an open knowledge network aiming at supporting metabolomics results int
 
 <https://bio.tools/fqseqname> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1933" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0078,
@@ -203679,18 +204586,18 @@ FORUM is an open knowledge network aiming at supporting metabolomics results int
 
 <https://bio.tools/fqseqpair> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1933" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1933" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3071 ;
@@ -203704,7 +204611,7 @@ FORUM is an open knowledge network aiming at supporting metabolomics results int
     biotools:primaryContact "Galaxy Support Team" .
 
 <https://bio.tools/fqsqueezer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
         edam:topic_2269 ;
@@ -203719,7 +204626,7 @@ FORUM is an open knowledge network aiming at supporting metabolomics results int
     sc:url "https://github.com/refresh-bio/fqsqueezer" .
 
 <https://bio.tools/fqtools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:description "A package that provides tools for efficient FASTQ files manipulation." ;
@@ -203730,7 +204637,7 @@ FORUM is an open knowledge network aiming at supporting metabolomics results int
     biotools:primaryContact "Nicolas Joly" .
 
 <https://bio.tools/fqtrim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3511 ;
@@ -203746,7 +204653,7 @@ FORUM is an open knowledge network aiming at supporting metabolomics results int
     biotools:primaryContact "Geo Pertea" .
 
 <https://bio.tools/fr-match> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2229,
@@ -203762,8 +204669,25 @@ FORUM is an open knowledge network aiming at supporting metabolomics results int
     sc:name "FR-Match" ;
     sc:url "https://github.com/JCVenterInstitute/FRmatch" .
 
+<https://bio.tools/fr-unet> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0634,
+        edam:topic_3382 ;
+    sc:citation <https://doi.org/10.1109/JBHI.2022.3188710>,
+        "pubmed:35788455" ;
+    sc:description "Full-Resolution Network and Dual-Threshold Iteration for Retinal Vessel and Coronary Angiograph Segmentation." ;
+    sc:featureList edam:operation_3436 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "FR-UNet" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/lseventeen/FR-UNet" .
+
 <https://bio.tools/fracridge> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3382 ;
     sc:citation <https://doi.org/10.1093/GIGASCIENCE/GIAA133>,
         "pmcid:PMC7702219",
@@ -203779,7 +204703,7 @@ In fracridge, we reparameterize RR in terms of the ratio γ between the L2-norms
     sc:url "https://nrdg.github.io/fracridge/" .
 
 <https://bio.tools/fractalsim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3056,
@@ -203794,7 +204718,7 @@ In fracridge, we reparameterize RR in terms of the ratio γ between the L2-norms
     biotools:primaryContact "Emile Chimusa" .
 
 <https://bio.tools/fragat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2275,
@@ -203812,7 +204736,7 @@ In fracridge, we reparameterize RR in terms of the ratio γ between the L2-norms
     biotools:primaryContact <https://orcid.org/0000-0002-1949-2768> .
 
 <https://bio.tools/fragfit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0736,
@@ -203835,26 +204759,26 @@ In fracridge, we reparameterize RR in terms of the ratio γ between the L2-norms
 
 <https://bio.tools/fraggenescan> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2305" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3053 ;
@@ -203870,8 +204794,29 @@ In fracridge, we reparameterize RR in terms of the ratio γ between the L2-norms
     biotools:primaryContact "Wazim MohammedIsmail",
         "Yuzhen Ye" .
 
+<https://bio.tools/fraggenescanrs> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0108,
+        edam:topic_0203,
+        edam:topic_3174 ;
+    sc:citation <https://doi.org/10.1186/S12859-022-04736-5>,
+        "pmcid:PMC9148508",
+        "pubmed:35643462" ;
+    sc:description "FragGeneScanRs is written in Rust, so first head over to their installation instructions. Afterwards, you can install the crate from crates.io with cargo install frag_gene_scan_rs The installation progress may prompt you to add a directory to your path so you can easily execute it." ;
+    sc:featureList edam:operation_0310,
+        edam:operation_2409,
+        edam:operation_2454 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "FragGeneScanRs" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/unipept/FragGeneScanRs" .
+
 <https://bio.tools/fragger> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078 ;
     sc:citation <https://doi.org/10.12688/f1000research.12486.2> ;
@@ -203887,14 +204832,12 @@ In fracridge, we reparameterize RR in terms of the ratio γ between the L2-norms
 
 <https://bio.tools/fraghmment> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:name "Protein sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:name "Protein features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3510 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btp149> ;
@@ -203909,8 +204852,53 @@ In fracridge, we reparameterize RR in terms of the ratio γ between the L2-norms
     sc:softwareVersion "1" ;
     sc:url "http://predictioncenter.org/Services/FragHMMent/descr.html" .
 
+<https://bio.tools/fragility> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0092,
+        edam:topic_3303,
+        edam:topic_3379 ;
+    sc:citation <https://doi.org/10.1371/JOURNAL.PONE.0268754>,
+        "pmcid:PMC9159630",
+        "pubmed:35648746" ;
+    sc:description "Assessing and visualizing fragility of clinical results with binary outcomes in R using the fragility package." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3435,
+        edam:operation_3927 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-2.0" ;
+    sc:name "fragility" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://cran.r-project.org/web/packages/fragility/fragility.pdf> ;
+    sc:url "https://cran.r-project.org/package=fragility" .
+
+<https://bio.tools/fragler> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0196,
+        edam:topic_0654,
+        edam:topic_2830,
+        edam:topic_3336,
+        edam:topic_3895 ;
+    sc:citation <https://doi.org/10.1021/ACSSYNBIO.2C00106>,
+        "pmcid:PMC9295698",
+        "pubmed:35797032" ;
+    sc:description "A Fragment Recycler Application Enabling Rapid and Scalable Modular DNA Assembly." ;
+    sc:featureList edam:operation_0292,
+        edam:operation_0310,
+        edam:operation_3359 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Apache-2.0" ;
+    sc:name "FRAGLER" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/AstraZeneca/fragler" .
+
 <https://bio.tools/fragmaxapp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2828,
         edam:topic_3316,
@@ -203934,14 +204922,12 @@ In fracridge, we reparameterize RR in terms of the ratio γ between the L2-norms
 
 <https://bio.tools/fragmentation_analyzer> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ] ;
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:name "Mass spectrometry data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2165" ;
-            sc:name "Protein ionisation curve" ;
-            sc:sameAs "http://edamontology.org/data_2165" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2165" ;
+            sc:name "Protein ionisation curve" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121 ;
     sc:citation <https://doi.org/10.1002/pmic.200900681> ;
@@ -203956,7 +204942,7 @@ In fracridge, we reparameterize RR in terms of the ratio γ between the L2-norms
     sc:url "http://compomics.github.io/projects/fragmentation-analyzer.html" .
 
 <https://bio.tools/fragmentationanalyzer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -203972,7 +204958,7 @@ In fracridge, we reparameterize RR in terms of the ratio γ between the L2-norms
     sc:url "http://compomics.github.io/projects/fragmentation-analyzer.html" .
 
 <https://bio.tools/fragmentstore> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0209,
@@ -203996,7 +204982,7 @@ In fracridge, we reparameterize RR in terms of the ratio γ between the L2-norms
         "Robert Preissner" .
 
 <https://bio.tools/fragpele> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0209,
@@ -204015,7 +205001,7 @@ In fracridge, we reparameterize RR in terms of the ratio γ between the L2-norms
     sc:url "https://github.com/carlesperez94/frag_pele" .
 
 <https://bio.tools/fragrep> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_3511 ;
@@ -204033,7 +205019,7 @@ In fracridge, we reparameterize RR in terms of the ratio γ between the L2-norms
     biotools:primaryContact "Mosig A" .
 
 <https://bio.tools/fragrep-dock> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0209,
@@ -204049,7 +205035,7 @@ In fracridge, we reparameterize RR in terms of the ratio γ between the L2-norms
     sc:url "http://xundrug.cn/fragrep" .
 
 <https://bio.tools/fragrus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0166 ;
@@ -204065,7 +205051,7 @@ In fracridge, we reparameterize RR in terms of the ratio γ between the L2-norms
     sc:url "http://www.bioinsilico.org/FRAGRUS/" .
 
 <https://bio.tools/fragsion> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_2814,
@@ -204081,7 +205067,7 @@ In fracridge, we reparameterize RR in terms of the ratio γ between the L2-norms
     sc:url "http://sysbio.rnet.missouri.edu/FRAGSION/" .
 
 <https://bio.tools/fragsite> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2275,
@@ -204099,7 +205085,7 @@ In fracridge, we reparameterize RR in terms of the ratio γ between the L2-norms
     biotools:primaryContact <https://orcid.org/0000-0002-1877-4958> .
 
 <https://bio.tools/fragte> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0637,
@@ -204115,7 +205101,7 @@ In fracridge, we reparameterize RR in terms of the ratio γ between the L2-norms
     sc:url "https://github.com/Yizhuangzhou/FRAGTE" .
 
 <https://bio.tools/frama> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0196,
@@ -204135,7 +205121,7 @@ In fracridge, we reparameterize RR in terms of the ratio γ between the L2-norms
         "Szafranski K" .
 
 <https://bio.tools/framed> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0593,
         edam:topic_0621,
@@ -204157,7 +205143,7 @@ In fracridge, we reparameterize RR in terms of the ratio γ between the L2-norms
     sc:url "http://genoweb.toulouse.inra.fr/FrameD/FD" .
 
 <https://bio.tools/framedp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_3170 ;
@@ -204175,7 +205161,7 @@ In fracridge, we reparameterize RR in terms of the ratio γ between the L2-norms
         "Sébastien Carrere" .
 
 <https://bio.tools/frap-analysis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0153,
         edam:topic_3070,
@@ -204192,7 +205178,7 @@ In fracridge, we reparameterize RR in terms of the ratio γ between the L2-norms
     biotools:primaryContact "Peter Jönsson" .
 
 <https://bio.tools/frap-zip> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -204209,7 +205195,7 @@ In fracridge, we reparameterize RR in terms of the ratio γ between the L2-norms
     biotools:primaryContact "Advanced Imaging Center" .
 
 <https://bio.tools/frc-qe> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3382 ;
     sc:citation <https://doi.org/10.1101/2020.09.10.291286> ;
@@ -204221,7 +205207,7 @@ In fracridge, we reparameterize RR in terms of the ratio γ between the L2-norms
     sc:url "https://github.com/PreibischLab/FRC-QE" .
 
 <https://bio.tools/frcd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0154,
@@ -204237,7 +205223,7 @@ In fracridge, we reparameterize RR in terms of the ratio γ between the L2-norms
     sc:url "http://www.rxnfinder.org/frcd/" .
 
 <https://bio.tools/frcoloc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0153,
         edam:topic_0593,
@@ -204258,8 +205244,31 @@ In fracridge, we reparameterize RR in terms of the ratio γ between the L2-norms
     sc:url "https://www.mathworks.com/matlabcentral/fileexchange/46608-frcoloc" ;
     biotools:primaryContact "Sascha D. Krauß" .
 
+<https://bio.tools/frdsm> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2209" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Mutation ID" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0199,
+        edam:topic_0634,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1109/TCBB.2022.3167468>,
+        "pubmed:35420988" ;
+    sc:description "An ensemble predictor with effective feature representation for deleterious synonymous mutation in human genome." ;
+    sc:featureList edam:operation_0253,
+        edam:operation_0433,
+        edam:operation_3659 ;
+    sc:isAccessibleForFree true ;
+    sc:name "frDSM" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://frdsm.xialab.info" .
+
 <https://bio.tools/fread> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_2814 ;
@@ -204279,14 +205288,12 @@ In fracridge, we reparameterize RR in terms of the ratio γ between the L2-norms
 
 <https://bio.tools/freak> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2166" ;
-            sc:name "Sequence composition plot" ;
-            sc:sameAs "http://edamontology.org/data_2166" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2166" ;
+            sc:name "Sequence composition plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0157 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -204316,7 +205323,7 @@ In fracridge, we reparameterize RR in terms of the ratio γ between the L2-norms
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/freak.html" .
 
 <https://bio.tools/frealign> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0611,
         edam:topic_1317 ;
@@ -204333,7 +205340,7 @@ In fracridge, we reparameterize RR in terms of the ratio γ between the L2-norms
     sc:url "http://emlab.rose2.brandeis.edu/frealign" .
 
 <https://bio.tools/freclu> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3170 ;
     sc:citation "pubmed:19439514" ;
@@ -204347,7 +205354,7 @@ In fracridge, we reparameterize RR in terms of the ratio γ between the L2-norms
     biotools:primaryContact "Shinichi Morishita" .
 
 <https://bio.tools/fred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btp409> ;
@@ -204364,7 +205371,7 @@ In fracridge, we reparameterize RR in terms of the ratio γ between the L2-norms
     sc:url "http://abi.inf.uni-tuebingen.de/Software/FRED" .
 
 <https://bio.tools/freddie> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3308,
@@ -204381,7 +205388,7 @@ Alternative splicing (AS) is an important mechanism in the development of many c
     sc:url "https://github.com/vpc-ccg/freddie/" .
 
 <https://bio.tools/freebayes> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0622,
@@ -204399,7 +205406,7 @@ Alternative splicing (AS) is an important mechanism in the development of many c
     biotools:primaryContact "Erik Garrison" .
 
 <https://bio.tools/freec> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3175,
@@ -204420,7 +205427,7 @@ Alternative splicing (AS) is an important mechanism in the development of many c
         "Valentina Boeva" .
 
 <https://bio.tools/freeclimber> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0625,
@@ -204435,7 +205442,7 @@ Alternative splicing (AS) is an important mechanism in the development of many c
     sc:url "https://github.com/adamspierer/FreeClimber/" .
 
 <https://bio.tools/freect_wfbp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3334,
         edam:topic_3452 ;
@@ -204451,7 +205458,7 @@ Alternative splicing (AS) is an important mechanism in the development of many c
     sc:url "http://cvib.ucla.edu/freect/" .
 
 <https://bio.tools/freecyto> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3168,
@@ -204471,7 +205478,7 @@ Alternative splicing (AS) is an important mechanism in the development of many c
         "Nathan Wong" .
 
 <https://bio.tools/freehand-prostate-annotation> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3070,
@@ -204491,26 +205498,26 @@ Alternative splicing (AS) is an important mechanism in the development of many c
 
 <https://bio.tools/freesasa> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ],
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein structure" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1459" ;
-            sc:name "Nucleic acid structure" ;
-            sc:sameAs "http://edamontology.org/data_1459" ] ;
+            sc:additionalType "http://edamontology.org/data_1459" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Nucleic acid structure" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0889" ;
-            sc:name "Structural profile" ;
-            sc:sameAs "http://edamontology.org/data_0889" ],
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein structure" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1459" ;
-            sc:name "Nucleic acid structure" ;
-            sc:sameAs "http://edamontology.org/data_1459" ],
+            sc:additionalType "http://edamontology.org/data_0889" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Structural profile" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1459" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Nucleic acid structure" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_1317,
@@ -204533,7 +205540,7 @@ Alternative splicing (AS) is an important mechanism in the development of many c
     sc:url "http://freesasa.github.io/" .
 
 <https://bio.tools/freescore> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078 ;
     sc:citation <https://doi.org/10.1186/1471-2105-12-217> ;
@@ -204546,7 +205553,7 @@ Alternative splicing (AS) is an important mechanism in the development of many c
     sc:url "http://faculty.uaeu.ac.ae/nzaki/SVM-Freescore.htm" .
 
 <https://bio.tools/freesfp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3382,
         edam:topic_3444 ;
@@ -204558,7 +205565,7 @@ Alternative splicing (AS) is an important mechanism in the development of many c
     sc:url "http://www.svi.nl/FreeSfp" .
 
 <https://bio.tools/freesurfer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3444 ;
     sc:citation <https://doi.org/10.12688/f1000research.14361.1> ;
@@ -204575,8 +205582,33 @@ Alternative splicing (AS) is an important mechanism in the development of many c
     sc:url "https://cran.r-project.org/web/packages/freesurfer/index.html" ;
     biotools:primaryContact "John Muschelli" .
 
+<https://bio.tools/freesurfer_suite> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Suite" ;
+    sc:applicationSubCategory edam:topic_0602,
+        edam:topic_3304,
+        edam:topic_3384,
+        edam:topic_3444 ;
+    sc:citation <https://doi.org/10.1101/2022.04.13.488251>,
+        <https://doi.org/10.3390/JCM11071907>,
+        "pmcid:PMC8999724",
+        "pubmed:35407515" ;
+    sc:description "FreeSurfer is an open source package for the analysis and visualization of structural, functional, and diffusion neuroimaging data from cross-sectional and longitudinal studies." ;
+    sc:featureList edam:operation_0533,
+        edam:operation_3435,
+        edam:operation_3926 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Other" ;
+    sc:name "FreeSurfer" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://github.com/freesurfer/freesurfer/blob/dev/CODE_OF_CONDUCT.md>,
+        <https://surfer.nmr.mgh.harvard.edu/fswiki> ;
+    sc:url "http://surfer.nmr.mgh.harvard.edu" .
+
 <https://bio.tools/fregat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3053 ;
@@ -204592,7 +205624,7 @@ Alternative splicing (AS) is an important mechanism in the development of many c
     biotools:primaryContact "Nadezhda M. Belonogova" .
 
 <https://bio.tools/freiburg_rna_tools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
@@ -204616,7 +205648,7 @@ Alternative splicing (AS) is an important mechanism in the development of many c
     biotools:primaryContact "Contact form" .
 
 <https://bio.tools/fresco> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3316,
         edam:topic_3489 ;
@@ -204631,7 +205663,7 @@ Alternative splicing (AS) is an important mechanism in the development of many c
     sc:url "https://www.informatik.hu-berlin.de/de/forschung/gebiete/wbi/resources#fresco" .
 
 <https://bio.tools/fret-ibra> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3068,
@@ -204649,7 +205681,7 @@ Alternative splicing (AS) is an important mechanism in the development of many c
     sc:url "http://github.com/gmunglani/fret-ibra" .
 
 <https://bio.tools/fretboard> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_2269,
@@ -204665,7 +205697,7 @@ Alternative splicing (AS) is an important mechanism in the development of many c
     sc:url "https://www.bioinformatics.nl/FRETboard" .
 
 <https://bio.tools/fretbursts> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0176,
         edam:topic_2814,
@@ -204683,8 +205715,27 @@ Alternative splicing (AS) is an important mechanism in the development of many c
     sc:url "http://tritemio.github.io/FRETBursts/" ;
     biotools:primaryContact <http://orcid.org/0000-0002-9348-1397> .
 
+<https://bio.tools/fretraj> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Plug-in" ;
+    sc:applicationSubCategory edam:topic_0176,
+        edam:topic_0593,
+        edam:topic_0659 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAB615>,
+        "pubmed:34478493" ;
+    sc:description "FRETraj is a Python module for predicting FRET efficiencies by calculating multiple accessible-contact volumes (multi-ACV) to estimate donor and acceptor dye dynamics." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_0476,
+        edam:operation_2476 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "FRETraj" ;
+    sc:operatingSystem "Linux",
+        "Windows" ;
+    sc:url "https://RNA-FRETools.github.io/fretraj" .
+
 <https://bio.tools/fretscal> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_2229,
@@ -204704,22 +205755,22 @@ Alternative splicing (AS) is an important mechanism in the development of many c
 
 <https://bio.tools/frgepistasis> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0955" ;
-            sc:name "Data index" ;
-            sc:sameAs "http://edamontology.org/data_0955" ],
+            sc:additionalType "http://edamontology.org/data_0955" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data index" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1017" ;
-            sc:name "Sequence range" ;
-            sc:sameAs "http://edamontology.org/data_1017" ],
+            sc:additionalType "http://edamontology.org/data_0920" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Genotype/phenotype report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0920" ;
-            sc:name "Genotype/phenotype report" ;
-            sc:sameAs "http://edamontology.org/data_0920" ] ;
+            sc:additionalType "http://edamontology.org/data_1017" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Sequence range" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2955" ;
-            sc:name "Sequence report" ;
-            sc:sameAs "http://edamontology.org/data_2955" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2955" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Sequence report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2269,
@@ -204741,7 +205792,7 @@ Alternative splicing (AS) is an important mechanism in the development of many c
     biotools:primaryContact <http://orcid.org/0000-0002-6043-1756> .
 
 <https://bio.tools/frida> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3518 ;
     sc:citation <https://doi.org/10.1038/modpathol.2008.111>,
@@ -204758,7 +205809,7 @@ Alternative splicing (AS) is an important mechanism in the development of many c
     sc:url "http://bui3.win.ad.jhu.edu/frida/" .
 
 <https://bio.tools/friend> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -204780,28 +205831,8 @@ Alternative splicing (AS) is an important mechanism in the development of many c
     sc:url "http://ilyinlab.org/friend/" ;
     biotools:primaryContact "Valentin Ilyin" .
 
-<https://bio.tools/fries_EWAK> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0128,
-        edam:topic_0130,
-        edam:topic_0154,
-        edam:topic_0202,
-        edam:topic_0632 ;
-    sc:citation <https://doi.org/10.1101/790949> ;
-    sc:description """Novel, provable algorithms for efficient ensemble-based computational protein design and their application to the redesign of the c-Raf-RBD:KRas protein-protein interface.
-
-Abstract The K * algorithm provably approximates partition functions for a set of states (e.g., protein, ligand, and protein-ligand complex) to a user-specified accuracy ε. Often, reaching an ε -approximation for a particular set of partition functions takes a prohibitive amount of time and space. To alleviate some of this cost, we introduce two algorithms into the osprey suite for protein design: fries , a Fast Removal of Inadequately Energied Sequences, and EWAK *, an Energy Window Approximation to K *.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'osprey', 'c-Raf-RBD c-Raf-RBD(RKY fries EWAK osprey', 'c-Raf-RBD c-Raf-RBD(RKY fries EWAK', 'EWAK'""" ;
-    sc:featureList edam:operation_0303,
-        edam:operation_0331,
-        edam:operation_2492 ;
-    sc:name "fries EWAK" ;
-    sc:url "https://doi.org/10.1101/790949" .
-
 <https://bio.tools/frites> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3300,
@@ -204820,14 +205851,14 @@ Abstract The K * algorithm provably approximates partition functions for a set o
 
 <https://bio.tools/frma> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Gene expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ] ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_1638" ;
+            sc:name "Gene expression data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1772" ;
-            sc:name "Score" ;
-            sc:sameAs "http://edamontology.org/data_1772" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1772" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Score" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -204853,14 +205884,14 @@ Single-array preprocessing algorithm that retains the advantages of multiarray a
 
 <https://bio.tools/frmatools> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Gene expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ] ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_1638" ;
+            sc:name "Gene expression data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1772" ;
-            sc:name "Score" ;
-            sc:sameAs "http://edamontology.org/data_1772" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1772" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Score" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -204881,7 +205912,7 @@ Single-array preprocessing algorithm that retains the advantages of multiarray a
     biotools:primaryContact "Matthew N. McCall" .
 
 <https://bio.tools/frmc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3170,
@@ -204896,8 +205927,28 @@ Single-array preprocessing algorithm that retains the advantages of multiarray a
     sc:name "FRMC" ;
     sc:url "https://github.com/HUST-DataMan/FRMC" .
 
+<https://bio.tools/frmlnet> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_3382,
+        edam:topic_3474,
+        edam:topic_3520 ;
+    sc:citation <https://doi.org/10.1109/TCYB.2021.3131651>,
+        "pubmed:34910656" ;
+    sc:description "Framelet-Based Multilevel Network for Pansharpening." ;
+    sc:featureList edam:operation_3436,
+        edam:operation_3799,
+        edam:operation_3927 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "FrMLNet" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/TingMAC/FrMLNet" .
+
 <https://bio.tools/frnet-dti> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0154,
@@ -204915,7 +205966,7 @@ Single-array preprocessing algorithm that retains the advantages of multiarray a
     sc:url "https://github.com/farshidrayhanuiu/FRnet-DTI/" .
 
 <https://bio.tools/frodock> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0128,
@@ -204932,7 +205983,7 @@ Single-array preprocessing algorithm that retains the advantages of multiarray a
     sc:url "http://chaconlab.org/frodock/index.html" .
 
 <https://bio.tools/frog> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0166,
@@ -204957,14 +206008,14 @@ Single-array preprocessing algorithm that retains the advantages of multiarray a
 
 <https://bio.tools/frog2> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1463" ;
-            sc:name "Small molecule structure" ;
-            sc:sameAs "http://edamontology.org/data_1463" ] ;
+            sc:additionalType "http://edamontology.org/data_1463" ;
+            sc:encodingFormat "http://edamontology.org/format_1196" ;
+            sc:name "Small molecule structure" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1463" ;
-            sc:name "Small molecule structure" ;
-            sc:sameAs "http://edamontology.org/data_1463" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1463" ;
+            sc:encodingFormat "http://edamontology.org/format_3814" ;
+            sc:name "Small molecule structure" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2275 ;
@@ -204982,7 +206033,7 @@ Single-array preprocessing algorithm that retains the advantages of multiarray a
         "Maria A. Miteva" .
 
 <https://bio.tools/frogancestrycalc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2885,
         edam:topic_3168 ;
@@ -204997,41 +206048,43 @@ Single-array preprocessing algorithm that retains the advantages of multiarray a
     sc:url "https://github.com/haseenaR/FROGAncestryCalc" .
 
 <https://bio.tools/frogs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0637,
         edam:topic_3168,
         edam:topic_3174,
         edam:topic_3299,
         edam:topic_3697 ;
-    sc:citation <https://doi.org/10.1093/bioinformatics/btx791> ;
-    sc:description "Analyze large sets of amplicon sequences and produce abundance tables of Operational Taxonomic Units (OTUs) and their taxonomic affiliation." ;
+    sc:citation <https://doi.org/10.1093/bib/bbab318>,
+        <https://doi.org/10.1093/bioinformatics/btx791> ;
+    sc:description "The user-friendly and Galaxy-supported pipeline FROGS analyses large sets of DNA amplicons sequences accurately and rapidly, essential for microbe community studies." ;
     sc:featureList edam:operation_3460 ;
     sc:license "GPL-3.0" ;
     sc:name "FROGS" ;
     sc:operatingSystem "Linux" ;
     sc:softwareHelp <https://github.com/geraldinepascal/FROGS> ;
+    sc:softwareVersion "4.0.0" ;
     sc:url "http://frogs.toulouse.inra.fr/" ;
     biotools:primaryContact "Géraldine Pascal" .
 
 <https://bio.tools/frogs_affiliation_otu> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3464" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3464" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0637,
         edam:topic_3174,
@@ -205051,14 +206104,14 @@ Single-array preprocessing algorithm that retains the advantages of multiarray a
 
 <https://bio.tools/frogs_affiliations_stat> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3464" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0637,
         edam:topic_3174,
@@ -205078,18 +206131,18 @@ Single-array preprocessing algorithm that retains the advantages of multiarray a
 
 <https://bio.tools/frogs_biom_to_stdbiom> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3464" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3464" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3071,
         edam:topic_3174,
@@ -205109,22 +206162,22 @@ Single-array preprocessing algorithm that retains the advantages of multiarray a
 
 <https://bio.tools/frogs_biom_to_tsv> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3464" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3071,
         edam:topic_3174,
@@ -205144,26 +206197,26 @@ Single-array preprocessing algorithm that retains the advantages of multiarray a
 
 <https://bio.tools/frogs_clustering> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3464" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0637,
         edam:topic_3174,
@@ -205183,14 +206236,14 @@ Single-array preprocessing algorithm that retains the advantages of multiarray a
 
 <https://bio.tools/frogs_clusters_stat> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3464" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3174,
         edam:topic_3301,
@@ -205210,26 +206263,26 @@ Single-array preprocessing algorithm that retains the advantages of multiarray a
 
 <https://bio.tools/frogs_demultiplex> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3168,
         edam:topic_3174,
@@ -205249,30 +206302,30 @@ Single-array preprocessing algorithm that retains the advantages of multiarray a
 
 <https://bio.tools/frogs_filters> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3464" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ],
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3464" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0637,
         edam:topic_3174,
@@ -205292,26 +206345,26 @@ Single-array preprocessing algorithm that retains the advantages of multiarray a
 
 <https://bio.tools/frogs_normalisation> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3464" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ],
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3464" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3168,
         edam:topic_3174,
@@ -205331,34 +206384,34 @@ Single-array preprocessing algorithm that retains the advantages of multiarray a
 
 <https://bio.tools/frogs_preprocess> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ],
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3168,
         edam:topic_3174,
@@ -205379,34 +206432,34 @@ Single-array preprocessing algorithm that retains the advantages of multiarray a
 
 <https://bio.tools/frogs_remove_chimera> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3464" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3464" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0080,
@@ -205425,7 +206478,7 @@ Single-array preprocessing algorithm that retains the advantages of multiarray a
     biotools:primaryContact "Galaxy Support Team" .
 
 <https://bio.tools/frogs_upload_tar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:citation <https://doi.org/10.1093/nar/gkw343>,
@@ -205442,7 +206495,7 @@ Single-array preprocessing algorithm that retains the advantages of multiarray a
     biotools:primaryContact "Galaxy Support Team" .
 
 <https://bio.tools/fromage> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3314,
         edam:topic_3316,
@@ -205458,7 +206511,7 @@ Single-array preprocessing algorithm that retains the advantages of multiarray a
     biotools:primaryContact <https://orcid.org/0000-0002-8725-5350> .
 
 <https://bio.tools/fromp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0602,
@@ -205475,7 +206528,7 @@ Single-array preprocessing algorithm that retains the advantages of multiarray a
     sc:url "https://github.com/LaRocheLab/FROMP" .
 
 <https://bio.tools/frozenchicken> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0621,
@@ -205497,7 +206550,7 @@ This R package, named affyChickGenomeArrayfrmavecs, was automatically created by
     sc:url "https://github.com/iduarte/FrozenChicken" .
 
 <https://bio.tools/frst> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2814 ;
     sc:citation <https://doi.org/10.1089/cmb.2005.12.1316>,
@@ -205516,7 +206569,7 @@ This R package, named affyChickGenomeArrayfrmavecs, was automatically created by
     biotools:primaryContact <http://orcid.org/0000-0003-4525-7793> .
 
 <https://bio.tools/frustratometer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0154,
@@ -205533,8 +206586,22 @@ This R package, named affyChickGenomeArrayfrmavecs, was automatically created by
     sc:name "FrustratometeR" ;
     sc:url "https://github.com/proteinphysiologylab/frustratometeR" .
 
+<https://bio.tools/fsa> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0080 ;
+    sc:citation <https://doi.org/10.1371/journal.pcbi.1000392> ;
+    sc:description "FSA (Fast Statistical Alignment) is a probabilistic multiple sequence alignment algorithm which uses a \"distance-based\" approach to aligning homologous protein, RNA or DNA sequence. FSA brings the high accuracies previously available only for small-scale analyses of proteins or RNAs to large-scale problems such as aligning thousands of sequences or megabase-long sequences." ;
+    sc:featureList edam:operation_0292 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "FSA" ;
+    sc:softwareHelp <http://fsa.sourceforge.net/FAQ.html> ;
+    sc:url "http://fsa.sourceforge.net/" ;
+    biotools:primaryContact "Robert K. Bradley" .
+
 <https://bio.tools/fsbc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0154,
@@ -205552,7 +206619,7 @@ This R package, named affyChickGenomeArrayfrmavecs, was automatically created by
     sc:url "http://www.aoki.ecei.tohoku.ac.jp/fsbc/" .
 
 <https://bio.tools/fsbrain> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0102,
@@ -205564,8 +206631,30 @@ This R package, named affyChickGenomeArrayfrmavecs, was automatically created by
     sc:name "fsbrain" ;
     sc:url "https://github.com/dfsp-spirit/fsbrain" .
 
+<https://bio.tools/fscam> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workbench" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_3170,
+        edam:topic_3308 ;
+    sc:citation <https://doi.org/10.1007/S12539-021-00495-8>,
+        "pubmed:35028910" ;
+    sc:description "FSCAM enables users to easily select features from single-cell RNA sequencing. It can also automatically determine the cluster number and accurately identify the cell types." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_2939,
+        edam:operation_3432,
+        edam:operation_3891,
+        edam:operation_3936 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "FSCAM" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/YanWang-jn/FSCAM" .
+
 <https://bio.tools/fsda> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0654,
@@ -205579,7 +206668,7 @@ This R package, named affyChickGenomeArrayfrmavecs, was automatically created by
     sc:url "https://github.com/compbio-UofT/FSDA" .
 
 <https://bio.tools/fsfinder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0099,
@@ -205594,7 +206683,7 @@ This R package, named affyChickGenomeArrayfrmavecs, was automatically created by
     sc:url "http://wilab.inha.ac.kr/fsfinder2/" .
 
 <https://bio.tools/fsl-mrs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0593,
@@ -205613,7 +206702,7 @@ This R package, named affyChickGenomeArrayfrmavecs, was automatically created by
     sc:url "http://fsl.fmrib.ox.ac.uk" .
 
 <https://bio.tools/fsqn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0632,
@@ -205634,7 +206723,7 @@ R package to perform Feature Specific Quantile Normalization.""" ;
     sc:url "https://github.com/jenniferfranks/FSQN" .
 
 <https://bio.tools/fstval> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0654 ;
@@ -205649,7 +206738,7 @@ R package to perform Feature Specific Quantile Normalization.""" ;
     sc:url "http://bioinfo.mju.ac.kr/fstval/" .
 
 <https://bio.tools/fsuite> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2885,
         edam:topic_3053,
@@ -205667,7 +206756,7 @@ R package to perform Feature Specific Quantile Normalization.""" ;
     sc:url "http://genestat.cephb.fr/software/index.php/FSuite" .
 
 <https://bio.tools/fsweight> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0128,
@@ -205684,7 +206773,7 @@ R package to perform Feature Specific Quantile Normalization.""" ;
     sc:url "http://www.comp.nus.edu.sg/~wongls/projects/functionprediction/index.html" .
 
 <https://bio.tools/fswm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3053,
@@ -205701,14 +206790,14 @@ R package to perform Feature Specific Quantile Normalization.""" ;
 
 <https://bio.tools/ft-comar> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1547" ;
-            sc:name "Protein contact map" ;
-            sc:sameAs "http://edamontology.org/data_1547" ] ;
+            sc:additionalType "http://edamontology.org/data_1547" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "Protein contact map" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein structure" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_3542 ;
@@ -205727,13 +206816,13 @@ R package to perform Feature Specific Quantile Normalization.""" ;
     biotools:primaryContact "Marco Vassura" .
 
 <https://bio.tools/ft-comar2298> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "Fault Tolerance Reconstruction of 3D Structure from Protein Contact Maps." ;
     sc:name "ft-comar" ;
     sc:url "http://bioinformatics.cs.unibo.it/FT-COMAR/index.html" .
 
 <https://bio.tools/ftdock> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0128 ;
     sc:description "Discretises two molecules onto orthogonal grids and performs a global scan of translational and rotational space. In order to scan rotational space it is necessary to rediscretise one of the molecules (for speed the smaller) for each rotation. The scoring method is primarily a surface complementarity score between the two grids. To speed up the surface complementarity calculations, which are convolutions of two grids, Fourier Transforms are used." ;
@@ -205742,7 +206831,7 @@ R package to perform Feature Specific Quantile Normalization.""" ;
     sc:url "http://www.sbg.bio.ic.ac.uk/docking/ftdock.html" .
 
 <https://bio.tools/ftg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654,
@@ -205755,10 +206844,10 @@ R package to perform Feature Specific Quantile Normalization.""" ;
         "Mac",
         "Windows" ;
     sc:softwareHelp <http://crdd.osdd.net/raghava/ftg/> ;
-    sc:url "http://www.imtech.res.in/raghava/ftg/" .
+    sc:url "https://webs.iiitd.edu.in/raghava/ftg/" .
 
 <https://bio.tools/ftk> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library",
         "Plug-in" ;
@@ -205771,7 +206860,7 @@ R package to perform Feature Specific Quantile Normalization.""" ;
     sc:url "https://github.com/hguo/ftk" .
 
 <https://bio.tools/ftmap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0166,
@@ -205792,8 +206881,31 @@ R package to perform Feature Specific Quantile Normalization.""" ;
     sc:url "http://ftmap.bu.edu/param" ;
     biotools:primaryContact "Contact Form" .
 
+<https://bio.tools/ftmove> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:name "Protein structure" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_0632,
+        edam:topic_2814,
+        edam:topic_3534 ;
+    sc:citation <https://doi.org/10.1016/J.JMB.2022.167587>,
+        "pubmed:35662465" ;
+    sc:description "A Web Server for Detection and Analysis of Cryptic and Allosteric Binding Sites by Mapping Multiple Protein Structures." ;
+    sc:featureList edam:operation_2429,
+        edam:operation_2575,
+        edam:operation_2844 ;
+    sc:isAccessibleForFree true ;
+    sc:name "FTMove" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://ftmove.bu.edu" .
+
 <https://bio.tools/ftmsranalysis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0152,
         edam:topic_0605,
@@ -205812,7 +206924,7 @@ R package to perform Feature Specific Quantile Normalization.""" ;
     sc:url "http://github.com/EMSL-Computing/ftmsRanalysis" .
 
 <https://bio.tools/ftprod> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0166,
@@ -205830,7 +206942,7 @@ R package to perform Feature Specific Quantile Normalization.""" ;
     sc:url "https://amarolab.ucsd.edu/ftprod/" .
 
 <https://bio.tools/fuento> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0123,
         edam:topic_0203,
@@ -205848,7 +206960,7 @@ R package to perform Feature Specific Quantile Normalization.""" ;
         "Bojan Zagrovic" .
 
 <https://bio.tools/fugu-sg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0102,
@@ -205870,7 +206982,7 @@ R package to perform Feature Specific Quantile Normalization.""" ;
     biotools:primaryContact "Fugu Genome Project Support" .
 
 <https://bio.tools/fugue> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0081,
@@ -205888,18 +207000,8 @@ R package to perform Feature Specific Quantile Normalization.""" ;
     sc:softwareHelp <http://mizuguchilab.org/fugue/documentation.html> ;
     sc:url "http://mizuguchilab.org/fugue/" .
 
-<https://bio.tools/full-length_16s_amplicon_sequencing> a sc:SoftwareApplication ;
-    sc:description "Long-read sequencing enables species-level resolution and drives functional insights with full-length16S/18S/ITS rRNA. CD Genomics offers products to support full-length 16S/18S/ITS rRNA sequencing service, from sample preparation and library construction to data analysis. Customized services are also available upon request. Please contact us for more information." ;
-    sc:name "Full-Length 16S Amplicon Sequencing" ;
-    sc:url "https://www.cd-genomics.com/Full-Length-16S-18S-ITS-Amplicon-Sequencing.html" .
-
-<https://bio.tools/full-length_transcripts_sequencing_iso-seq> a sc:SoftwareApplication ;
-    sc:description "CD Genomics has extensive experience in offering Iso-Seq service by producing full-length transcripts without assembly. Strict quality control following every procedure is executed to ensure the comprehensive and accurate results. Long-read sequencing allows the straightforward identification of alternatively transcribed or processed transcripts, polycistronic transcription units, and other long cDNA sequences. With expertise and dedication, advanced PacBio SMRT platform and services from CD Genomics will be your best companion in Iso-Seq. Please contact us for more information and a detailed quote." ;
-    sc:name "Full-Length Transcripts Sequencing (Iso-Seq)" ;
-    sc:url "https://www.cd-genomics.com/Full-Length-Transcripts-Sequencing-Iso-Seq.html" .
-
 <https://bio.tools/full-parasites> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0203,
@@ -205922,7 +207024,7 @@ R package to perform Feature Specific Quantile Normalization.""" ;
     biotools:primaryContact "Y. Suzuki" .
 
 <https://bio.tools/fullsibqtl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0625,
@@ -205937,7 +207039,7 @@ R package to perform Feature Specific Quantile Normalization.""" ;
     sc:url "https://github.com/augusto-garcia/fullsibQTL" .
 
 <https://bio.tools/fuma> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0099,
@@ -205956,7 +207058,7 @@ R package to perform Feature Specific Quantile Normalization.""" ;
     sc:url "https://github.com/ErasmusMC-Bioinformatics/fuma" .
 
 <https://bio.tools/fun> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0092,
@@ -205975,8 +207077,36 @@ R package to perform Feature Specific Quantile Normalization.""" ;
     biotools:primaryContact "Daniel Probst",
         "Jean-Louis Reymond" .
 
+<https://bio.tools/funage-pro> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1893" ;
+            sc:name "Locus ID" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:name "Sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0114,
+        edam:topic_0121,
+        edam:topic_0623,
+        edam:topic_3673,
+        edam:topic_3941 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAC441>,
+        "pmcid:PMC9252808",
+        "pubmed:35641095" ;
+    sc:description "Comprehensive web server for gene set enrichment analysis of prokaryotes." ;
+    sc:featureList edam:operation_0435,
+        edam:operation_2436,
+        edam:operation_3432 ;
+    sc:isAccessibleForFree true ;
+    sc:name "FUNAGE-Pro" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://funagepro.molgenrug.nl" .
+
 <https://bio.tools/funannotate> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0622 ;
     sc:description "funannotate is a pipeline for genome annotation (built specifically for fungi, but will also work with higher eukaryotes)." ;
@@ -205988,7 +207118,7 @@ R package to perform Feature Specific Quantile Normalization.""" ;
     biotools:primaryContact "Jon Palmer" .
 
 <https://bio.tools/funcassociate> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0078,
@@ -206004,7 +207134,7 @@ R package to perform Feature Specific Quantile Normalization.""" ;
     sc:url "http://llama.mshri.on.ca/funcassociate/" .
 
 <https://bio.tools/funcepimod> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0654,
@@ -206022,18 +207152,18 @@ R package to perform Feature Specific Quantile Normalization.""" ;
 
 <https://bio.tools/funcexplorer> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Gene expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ] ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_3751" ;
+            sc:name "Gene expression data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3768" ;
-            sc:name "Clustered gene expression profiles" ;
-            sc:sameAs "http://edamontology.org/data_3768" ],
+            sc:additionalType "http://edamontology.org/data_3768" ;
+            sc:encodingFormat "http://edamontology.org/format_2058" ;
+            sc:name "Clustered gene expression profiles" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2353" ;
-            sc:name "Ontology data" ;
-            sc:sameAs "http://edamontology.org/data_2353" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2353" ;
+            sc:encodingFormat "http://edamontology.org/format_3603" ;
+            sc:name "Ontology data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0085,
         edam:topic_0203,
@@ -206056,7 +207186,7 @@ R package to perform Feature Specific Quantile Normalization.""" ;
     sc:url "https://biit.cs.ut.ee/funcexplorer" .
 
 <https://bio.tools/funchip> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3169 ;
@@ -206075,26 +207205,26 @@ R package to perform Feature Specific Quantile Normalization.""" ;
 
 <https://bio.tools/funcisnp> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1276" ;
-            sc:name "Nucleic acid features" ;
-            sc:sameAs "http://edamontology.org/data_1276" ],
+            sc:additionalType "http://edamontology.org/data_1276" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Nucleic acid features" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ] ;
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Annotation track" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1636" ;
-            sc:name "Heat map" ;
-            sc:sameAs "http://edamontology.org/data_1636" ],
+            sc:additionalType "http://edamontology.org/data_1276" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Nucleic acid features" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ],
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Annotation track" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1276" ;
-            sc:name "Nucleic acid features" ;
-            sc:sameAs "http://edamontology.org/data_1276" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1636" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Heat map" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0102,
@@ -206116,7 +207246,7 @@ R package to perform Feature Specific Quantile Normalization.""" ;
     biotools:primaryContact "Simon G. Coetzee" .
 
 <https://bio.tools/funclust> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0081 ;
     sc:citation <https://doi.org/10.1186/1471-2105-9-S2-S2> ;
@@ -206128,7 +207258,7 @@ R package to perform Feature Specific Quantile Normalization.""" ;
     sc:url "http://pdbfun.uniroma2.it/funclust/" .
 
 <https://bio.tools/funcluster> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3321,
@@ -206146,14 +207276,12 @@ R package to perform Feature Specific Quantile Normalization.""" ;
 
 <https://bio.tools/funcoup> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2299" ;
-            sc:name "Gene name" ;
-            sc:sameAs "http://edamontology.org/data_2299" ] ;
+            sc:additionalType "http://edamontology.org/data_2299" ;
+            sc:name "Gene name" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:name "Protein features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602 ;
     sc:citation <https://doi.org/10.1093/nar/gkt984> ;
@@ -206169,7 +207297,7 @@ R package to perform Feature Specific Quantile Normalization.""" ;
     sc:url "http://funcoup.sbc.su.se/" .
 
 <https://bio.tools/funcpatch> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0166,
         edam:topic_2275,
@@ -206185,7 +207313,7 @@ R package to perform Feature Specific Quantile Normalization.""" ;
     sc:url "http://info.mcmaster.ca/yifei/FuncPatch/" .
 
 <https://bio.tools/funcpep> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0659,
@@ -206203,7 +207331,7 @@ R package to perform Feature Specific Quantile Normalization.""" ;
     sc:url "https://bioinformatics.mdanderson.org/Supplements/FuncPEP/" .
 
 <https://bio.tools/funcprop> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_1775,
@@ -206220,36 +207348,8 @@ R package to perform Feature Specific Quantile Normalization.""" ;
     biotools:primaryContact "Duncan Penfold-Brown",
         "Noah Youngs" .
 
-<https://bio.tools/functional_GWAS> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0634,
-        edam:topic_0804,
-        edam:topic_2885,
-        edam:topic_3295,
-        edam:topic_3517 ;
-    sc:citation <https://doi.org/10.1101/871384> ;
-    sc:description """Dissecting molecular regulatory mechanisms underlying noncoding susceptibility SNPs associated with 19 autoimmune diseases using multi-omics integrative analysis.
-
-fnGWAS, an integrative analysis frame designed for dissecting molecular mechanisms underlying noncoding GWAS SNPs through incorporating diverse functional cell-specific multi-omics data.
-
-:=====================================================================================:.
-
-Dissecting the functionality of noncoding GWAS SNPs.
-
-Just select interested autoimmune diseases (or select all without disease limitation) , select type and enter correspond SNPs/CotoBand/Target Gene.
-
-: fnGWAS is an integrated analysis pipeline for dissecting molecular mechanisms :.
-
-Genome-wide association studies (GWASs) have unraveled thousands of susceptible variants associated with tens of different autoimmune diseases.
-
-: underlying noncoding GWAS SNPs through incorporating diverse functional :""" ;
-    sc:featureList edam:operation_0484,
-        edam:operation_3196,
-        edam:operation_3226 ;
-    sc:name "functional GWAS" ;
-    sc:url "http://fngwas.online/" .
-
 <https://bio.tools/functionannotator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_0637,
@@ -206267,7 +207367,7 @@ Genome-wide association studies (GWASs) have unraveled thousands of susceptible
     biotools:primaryContact "Support" .
 
 <https://bio.tools/functree> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0092,
@@ -206286,7 +207386,7 @@ Genome-wide association studies (GWASs) have unraveled thousands of susceptible
     biotools:primaryContact "Support" .
 
 <https://bio.tools/funel> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2259,
         edam:topic_3307 ;
@@ -206305,7 +207405,7 @@ Genome-wide association studies (GWASs) have unraveled thousands of susceptible
         "Nicola Lazzarini" .
 
 <https://bio.tools/funfold2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0128,
@@ -206326,13 +207426,31 @@ Genome-wide association studies (GWASs) have unraveled thousands of susceptible
     sc:url "http://www.reading.ac.uk/bioinf/FunFOLD/FunFOLD_form_2_0.html" ;
     biotools:primaryContact "Dr Liam J. McGuffin" .
 
-<https://bio.tools/fungal_whole_genome_de_novo_sequencing> a sc:SoftwareApplication ;
-    sc:description "CD Genomics provides fungal whole genome sequencing with the PacBio Sequel system to offer more insights into genetic structure and functions. We are best in the knowledge, practise, and experience. PacBio, the third-generation sequencers, is highly robust and cost-effective and should be the platform of choice in sequencing fungi genomes, particularly for those that are well-known to be difficult-to-sequence. CD Genomics has extensive experience to offer the fungi whole genome sequencing service. Please contact us for more information and a detailed quote." ;
-    sc:name "Fungal Whole Genome de novo Sequencing" ;
-    sc:url "https://www.cd-genomics.com/Fungal-Whole-Genome-de-novo-Sequencing.html" .
+<https://bio.tools/funfor> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_0593,
+        edam:topic_3053 ;
+    sc:citation <https://doi.org/10.1038/S41598-021-02265-4>,
+        "pmcid:PMC8683425",
+        "pubmed:34921167" ;
+    sc:description "An R package for the functional random forest (FunFor) algorithm. The FunFor algorithm is able to predict curve responses for new observations and select important variables from a large set of scalar predictors." ;
+    sc:featureList edam:operation_0451,
+        edam:operation_0452,
+        edam:operation_3196,
+        edam:operation_3659,
+        edam:operation_3936 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "FunFor" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/xiaotiand/FunFor" .
 
 <https://bio.tools/fungap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0622,
@@ -206349,7 +207467,7 @@ Genome-wide association studies (GWASs) have unraveled thousands of susceptible
     biotools:primaryContact "In-Geol Choi" .
 
 <https://bio.tools/fungarium> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_0621,
@@ -206368,18 +207486,18 @@ Genome-wide association studies (GWASs) have unraveled thousands of susceptible
 
 <https://bio.tools/fungenes> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0842" ;
-            sc:name "Identifier" ;
-            sc:sameAs "http://edamontology.org/data_0842" ] ;
+            sc:additionalType "http://edamontology.org/data_0842" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Identifier" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ],
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:encodingFormat "http://edamontology.org/format_2060" ;
+            sc:name "Pathway or network" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0928" ;
-            sc:name "Gene expression profile" ;
-            sc:sameAs "http://edamontology.org/data_0928" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0928" ;
+            sc:encodingFormat "http://edamontology.org/format_3617" ;
+            sc:name "Gene expression profile" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0203,
@@ -206404,7 +207522,7 @@ Genome-wide association studies (GWASs) have unraveled thousands of susceptible
     sc:url "http://biit.cs.ut.ee/fungenes/" .
 
 <https://bio.tools/fungiexp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0780,
@@ -206421,7 +207539,7 @@ Genome-wide association studies (GWASs) have unraveled thousands of susceptible
     sc:url "http://bioinfo.njau.edu.cn/fungiExp" .
 
 <https://bio.tools/fungifun> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0203,
@@ -206440,7 +207558,7 @@ Genome-wide association studies (GWASs) have unraveled thousands of susceptible
         "Steffen Priebe" .
 
 <https://bio.tools/funhop> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -206459,7 +207577,7 @@ Genome-wide association studies (GWASs) have unraveled thousands of susceptible
         <https://orcid.org/0000-0003-1822-2675> .
 
 <https://bio.tools/funm6aviewer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -206479,7 +207597,7 @@ Genome-wide association studies (GWASs) have unraveled thousands of susceptible
         <https://orcid.org/0000-0003-3455-205X> .
 
 <https://bio.tools/funmap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3053 ;
@@ -206496,8 +207614,55 @@ Genome-wide association studies (GWASs) have unraveled thousands of susceptible
     sc:softwareVersion "2.2.1" ;
     sc:url "http://statgen.psu.edu/software/funmap.html" .
 
+<https://bio.tools/funomic> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0621,
+        edam:topic_0769,
+        edam:topic_3174,
+        edam:topic_3697,
+        edam:topic_3837 ;
+    sc:citation <https://doi.org/10.1016/j.csbj.2022.07.010>,
+        "pmcid:PMC9293737",
+        "pubmed:35891785" ;
+    sc:description "Pipeline with built-in Fungal Taxonomic and Functional Databases for Human Mycobiome Profiling." ;
+    sc:featureList edam:operation_3200,
+        edam:operation_3460,
+        edam:operation_3927 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "FunOMIC" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/ManichanhLab/FunOMIC" .
+
+<https://bio.tools/funorder> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_0121,
+        edam:topic_0621,
+        edam:topic_3172,
+        edam:topic_3293 ;
+    sc:citation <https://doi.org/10.1371/JOURNAL.PCBI.1009372>,
+        "pmcid:PMC8476034",
+        "pubmed:34570757" ;
+    sc:description "A robust and semi-automated method for the identification of essential biosynthetic genes through computational molecular co-evolution." ;
+    sc:featureList edam:operation_0324,
+        edam:operation_2939,
+        edam:operation_3216,
+        edam:operation_3891 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "FunOrder" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/gvignolle/FunOrder" .
+
 <https://bio.tools/funpat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1186/1471-2164-16-S6-S2> ;
@@ -206514,7 +207679,7 @@ Genome-wide association studies (GWASs) have unraveled thousands of susceptible
     biotools:primaryContact "Tiziana Sanavia" .
 
 <https://bio.tools/funrich> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0602,
@@ -206531,7 +207696,7 @@ Genome-wide association studies (GWASs) have unraveled thousands of susceptible
     sc:url "http://www.funrich.org/" .
 
 <https://bio.tools/funshift> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0623,
@@ -206548,7 +207713,7 @@ Genome-wide association studies (GWASs) have unraveled thousands of susceptible
     biotools:primaryContact "Erik Sonnhammer" .
 
 <https://bio.tools/funsimmat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0203,
@@ -206571,14 +207736,13 @@ Genome-wide association studies (GWASs) have unraveled thousands of susceptible
 
 <https://bio.tools/funsip> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ] ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:name "Nucleic acid sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2070" ;
-            sc:name "Sequence motif (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_2070" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2070" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Sequence motif (nucleic acid)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_3511 ;
@@ -206594,7 +207758,7 @@ Genome-wide association studies (GWASs) have unraveled thousands of susceptible
     sc:url "http://bioinformatics.psb.ugent.be/supplementary_data/mibel/FunSiP/" .
 
 <https://bio.tools/funsys> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3170,
@@ -206612,7 +207776,7 @@ Genome-wide association studies (GWASs) have unraveled thousands of susceptible
     biotools:primaryContact "Debmalya Barh" .
 
 <https://bio.tools/funtaxis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0637 ;
     sc:citation <https://doi.org/10.1038/srep31971> ;
@@ -206629,7 +207793,7 @@ Genome-wide association studies (GWASs) have unraveled thousands of susceptible
     biotools:primaryContact "Stefano Toppo" .
 
 <https://bio.tools/funtoonorm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3071,
@@ -206646,7 +207810,7 @@ Genome-wide association studies (GWASs) have unraveled thousands of susceptible
     sc:url "https://github.com/GreenwoodLab/funtooNorm" .
 
 <https://bio.tools/funtree> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0154,
@@ -206669,7 +207833,7 @@ Genome-wide association studies (GWASs) have unraveled thousands of susceptible
     biotools:primaryContact "Contact Form" .
 
 <https://bio.tools/funtrp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0130,
         edam:topic_0199,
@@ -206689,7 +207853,7 @@ Evaluating the impact of non-synonymous genetic variants is essential for uncove
     sc:url "https://services.bromberglab.org/funtrp/submit" .
 
 <https://bio.tools/fupred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0102,
@@ -206708,7 +207872,7 @@ Evaluating the impact of non-synonymous genetic variants is essential for uncove
     sc:url "https://zhanglab.ccmb.med.umich.edu/FUpred" .
 
 <https://bio.tools/fuse> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0203,
@@ -206727,7 +207891,7 @@ Evaluating the impact of non-synonymous genetic variants is essential for uncove
     sc:url "https://github.com/rajinder4489/FuSe" .
 
 <https://bio.tools/fusenet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0654,
@@ -206746,10 +207910,10 @@ Evaluating the impact of non-synonymous genetic variants is essential for uncove
 
 <https://bio.tools/fusion> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3112" ;
-            sc:name "Gene expression matrix" ;
-            sc:sameAs "http://edamontology.org/data_3112" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3112" ;
+            sc:encodingFormat "http://edamontology.org/format_3620" ;
+            sc:name "Gene expression matrix" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0092,
@@ -206785,7 +207949,7 @@ Evaluating the impact of non-synonymous genetic variants is essential for uncove
     sc:url "https://fusion.cebitec.uni-bielefeld.de" .
 
 <https://bio.tools/fusion-mri-ct-image> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3306,
         edam:topic_3344,
@@ -206807,7 +207971,7 @@ Evaluating the impact of non-synonymous genetic variants is essential for uncove
     biotools:primaryContact "Durga Prasad Bavirisetti" .
 
 <https://bio.tools/fusion_protein> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -206823,8 +207987,29 @@ Evaluating the impact of non-synonymous genetic variants is essential for uncove
     sc:softwareHelp <http://protein.rnet.missouri.edu/FUSION/tutorial.php> ;
     sc:url "http://protein.rnet.missouri.edu/FUSION/" .
 
+<https://bio.tools/fusionai> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workflow" ;
+    sc:applicationSubCategory edam:topic_0114,
+        edam:topic_0654,
+        edam:topic_3170,
+        edam:topic_3344,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1016/J.XPRO.2022.101185>,
+        "pmcid:PMC8892011",
+        "pubmed:35252882" ;
+    sc:description "FusionAI, a deep learning pipeline predicting human fusion gene breakpoints from DNA sequence." ;
+    sc:featureList edam:operation_1812,
+        edam:operation_2454,
+        edam:operation_3359 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "FusionAI" ;
+    sc:operatingSystem "Linux" ;
+    sc:url "https://compbio.uth.edu/FusionGDB2/FusionAI" .
+
 <https://bio.tools/fusionanalyser> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0114,
         edam:topic_3168,
@@ -206844,7 +208029,7 @@ Evaluating the impact of non-synonymous genetic variants is essential for uncove
     biotools:primaryContact "Rocco Piazza" .
 
 <https://bio.tools/fusioncatcher> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0114,
         edam:topic_3170 ;
@@ -206859,7 +208044,7 @@ Evaluating the impact of non-synonymous genetic variants is essential for uncove
     biotools:primaryContact "Daniel Nicorici" .
 
 <https://bio.tools/fusionhunter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_2640,
@@ -206877,8 +208062,25 @@ Evaluating the impact of non-synonymous genetic variants is essential for uncove
     biotools:primaryContact "Jian Ma",
         "Yang Li" .
 
+<https://bio.tools/fusionm4net> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0634,
+        edam:topic_3382 ;
+    sc:citation <https://doi.org/10.1016/J.MEDIA.2021.102307>,
+        "pubmed:34861602" ;
+    sc:description "A multi-stage multi-modal learning algorithm for multi-label skin lesion classification." ;
+    sc:featureList edam:operation_3435 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "FusionM4Net" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/pixixiaonaogou/MLSDR" .
+
 <https://bio.tools/fusionmap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0114 ;
     sc:citation "pubmed:21593131" ;
@@ -206893,7 +208095,7 @@ Evaluating the impact of non-synonymous genetic variants is essential for uncove
     sc:url "http://www.arrayserver.com/wiki/index.php?title=FusionMap" .
 
 <https://bio.tools/fusionseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0114,
         edam:topic_3170 ;
@@ -206909,7 +208111,7 @@ Evaluating the impact of non-synonymous genetic variants is essential for uncove
     biotools:primaryContact "Mark B Gerstein" .
 
 <https://bio.tools/fusorsv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3175 ;
     sc:citation <https://doi.org/10.1186/s13059-018-1404-6>,
@@ -206926,7 +208128,7 @@ Evaluating the impact of non-synonymous genetic variants is essential for uncove
         "Charles Lee" .
 
 <https://bio.tools/future-trends-covid19-infections-ny-city-tokyo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_3305,
@@ -206942,16 +208144,64 @@ Evaluating the impact of non-synonymous genetic variants is essential for uncove
     sc:url "https://www.mathworks.com/matlabcentral/fileexchange/75435-future-trends-in-covid-19-infections-in-ny-city-and-tokyo" ;
     biotools:primaryContact "Ben T.  Nohara" .
 
+<https://bio.tools/fuzdb> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0099,
+        edam:topic_0154,
+        edam:topic_0601,
+        edam:topic_0749,
+        edam:topic_2229 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAB1060>,
+        "pmcid:PMC8728163",
+        "pubmed:34791357" ;
+    sc:description """The FuzDB database assembles experimentally observed fuzzy protein complexes
+involved in a variety of cellular processes and biomolecular condensates""" ;
+    sc:featureList edam:operation_0310,
+        edam:operation_0417,
+        edam:operation_2421,
+        edam:operation_3454 ;
+    sc:isAccessibleForFree true ;
+    sc:license "CC-BY-NC-SA-4.0" ;
+    sc:name "FuzDB" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareVersion "4.0" ;
+    sc:url "https://fuzdb.org" .
+
+<https://bio.tools/fuzdrop> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0121,
+        edam:topic_0601,
+        edam:topic_0634,
+        edam:topic_0749,
+        edam:topic_2229 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAC386>,
+        "pmcid:PMC9252777",
+        "pubmed:35610022" ;
+    sc:description "A tool to visualizing the sequence-dependent propensity of liquid-liquid phase separation and aggregation of proteins." ;
+    sc:featureList edam:operation_0474,
+        edam:operation_3436,
+        edam:operation_3454,
+        edam:operation_3904 ;
+    sc:license "Not licensed" ;
+    sc:name "FuzDrop" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://fuzdrop.bio.unipd.it/tutorial> ;
+    sc:url "https://fuzdrop.bio.unipd.it" .
+
 <https://bio.tools/fuzznuc> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2887" ;
-            sc:name "Nucleic acid sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2887" ],
+            sc:additionalType "http://edamontology.org/data_1353" ;
+            sc:name "Sequence motif" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1353" ;
-            sc:name "Sequence motif" ;
-            sc:sameAs "http://edamontology.org/data_1353" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2887" ;
+            sc:name "Nucleic acid sequence record" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3511 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -206983,14 +208233,12 @@ Evaluating the impact of non-synonymous genetic variants is essential for uncove
 
 <https://bio.tools/fuzzpro> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1353" ;
-            sc:name "Sequence motif" ;
-            sc:sameAs "http://edamontology.org/data_1353" ] ;
+            sc:additionalType "http://edamontology.org/data_1353" ;
+            sc:name "Sequence motif" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:name "Sequence features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3511 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -207022,18 +208270,15 @@ Evaluating the impact of non-synonymous genetic variants is essential for uncove
 
 <https://bio.tools/fuzztran> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1353" ;
-            sc:name "Sequence motif" ;
-            sc:sameAs "http://edamontology.org/data_1353" ],
+            sc:additionalType "http://edamontology.org/data_1353" ;
+            sc:name "Sequence motif" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2887" ;
-            sc:name "Nucleic acid sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2887" ] ;
+            sc:additionalType "http://edamontology.org/data_2887" ;
+            sc:name "Nucleic acid sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1254" ;
-            sc:name "Sequence property" ;
-            sc:sameAs "http://edamontology.org/data_1254" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1254" ;
+            sc:name "Sequence property" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0160 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -207066,18 +208311,18 @@ Evaluating the impact of non-synonymous genetic variants is essential for uncove
 
 <https://bio.tools/fuzzyclust> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Gene expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ],
+            sc:additionalType "http://edamontology.org/data_2082" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Matrix" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2082" ;
-            sc:name "Matrix" ;
-            sc:sameAs "http://edamontology.org/data_2082" ] ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Gene expression data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Gene expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Gene expression data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_3473 ;
@@ -207098,7 +208343,7 @@ Evaluating the impact of non-synonymous genetic variants is essential for uncove
     biotools:primaryContact <http://orcid.org/0000-0002-9708-6722> .
 
 <https://bio.tools/fuzzyq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_2269 ;
@@ -207111,7 +208356,7 @@ Evaluating the impact of non-synonymous genetic variants is essential for uncove
     sc:url "https://ligophorus.github.io/FuzzyQ/" .
 
 <https://bio.tools/fve-novel> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0781,
@@ -207127,7 +208372,7 @@ Evaluating the impact of non-synonymous genetic variants is essential for uncove
     sc:url "https://github.com/saima-tithi/FVE-novel" .
 
 <https://bio.tools/fvtlda> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_0659,
@@ -207144,7 +208389,7 @@ Evaluating the impact of non-synonymous genetic variants is essential for uncove
     sc:url "https://github.com/xiaoyubin123/FVTLDA" .
 
 <https://bio.tools/fwavina> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0209,
         edam:topic_2275,
@@ -207156,16 +208401,37 @@ Evaluating the impact of non-synonymous genetic variants is essential for uncove
     sc:name "FWAVina" ;
     sc:url "https://github.com/eddyblue/FWAVina" .
 
+<https://bio.tools/fxr> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0602,
+        edam:topic_0749,
+        edam:topic_3169,
+        edam:topic_3407 ;
+    sc:citation <https://doi.org/10.1002/HEP4.1749>,
+        "pmcid:PMC8485886",
+        "pubmed:34558825" ;
+    sc:description "Meta-analysis and Consolidation of Farnesoid X Receptor Chromatin Immunoprecipitation Sequencing Data Across Different Species and Conditions." ;
+    sc:featureList edam:operation_3222,
+        edam:operation_3435,
+        edam:operation_3660 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "FXR" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://fxratlas.tugraz.at" .
+
 <https://bio.tools/g-blastn> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:name "Protein sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0857" ;
-            sc:name "Sequence search results" ;
-            sc:sameAs "http://edamontology.org/data_0857" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0857" ;
+            sc:name "Sequence search results" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0080,
@@ -207186,7 +208452,7 @@ Evaluating the impact of non-synonymous genetic variants is essential for uncove
         "Zhao Kaiyong" .
 
 <https://bio.tools/g-class> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0623 ;
     sc:description "A Divide and Conquer Application for Grid Protein Classification." ;
@@ -207201,7 +208467,7 @@ Evaluating the impact of non-synonymous genetic variants is essential for uncove
     biotools:primaryContact <https://orcid.org/0000-0002-0222-4273> .
 
 <https://bio.tools/g-codereader> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344 ;
@@ -207215,8 +208481,28 @@ Evaluating the impact of non-synonymous genetic variants is essential for uncove
     sc:url "https://www.mathworks.com/matlabcentral/fileexchange/67767-g-code-reader" ;
     biotools:primaryContact "Tom Williamson" .
 
+<https://bio.tools/g-dirt> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0625,
+        edam:topic_2885,
+        edam:topic_3517 ;
+    sc:citation <https://doi.org/10.1093/BIB/BBAC348>,
+        "pubmed:36040109" ;
+    sc:description "A web server for identification and removal of duplicate germplasms based on identity-by-state analysis using single nucleotide polymorphism genotyping data." ;
+    sc:featureList edam:operation_0308,
+        edam:operation_2938,
+        edam:operation_3196 ;
+    sc:isAccessibleForFree true ;
+    sc:name "G-DIRT" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://webtools.nbpgr.ernet.in/gdirt/" .
+
 <https://bio.tools/g-language_api> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0622,
@@ -207232,7 +208518,7 @@ Evaluating the impact of non-synonymous genetic variants is essential for uncove
     sc:url "http://www.g-language.org/wiki/rest" .
 
 <https://bio.tools/g-language_gae> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0203,
@@ -207254,7 +208540,7 @@ Evaluating the impact of non-synonymous genetic variants is essential for uncove
     biotools:primaryContact "Kazuharu Arakawa" .
 
 <https://bio.tools/g-language_ws> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_2269 ;
@@ -207270,7 +208556,7 @@ Evaluating the impact of non-synonymous genetic variants is essential for uncove
     sc:url "http://ws.g-language.org/gdoc/" .
 
 <https://bio.tools/g-links> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0219 ;
     sc:citation <https://doi.org/10.12688/F1000RESEARCH.5754.2>,
@@ -207290,7 +208576,7 @@ Evaluating the impact of non-synonymous genetic variants is essential for uncove
     biotools:primaryContact "Kazuki Oshita" .
 
 <https://bio.tools/g-pot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0632 ;
     sc:citation <https://doi.org/10.1002/9780470253441.ch11> ;
@@ -207303,7 +208589,7 @@ Evaluating the impact of non-synonymous genetic variants is essential for uncove
     sc:url "http://dna.engr.uconn.edu/?page_id=74" .
 
 <https://bio.tools/g-root> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0219,
         edam:topic_0610,
@@ -207325,7 +208611,7 @@ Our principal objective with GRooT is to contribute towards the inclusion of roo
     sc:url "https://groot-database.github.io/GRooT/" .
 
 <https://bio.tools/g-sesame> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0602,
@@ -207345,7 +208631,7 @@ Our principal objective with GRooT is to contribute towards the inclusion of roo
     biotools:primaryContact "James Z. Wang" .
 
 <https://bio.tools/g-sqz> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3071,
         edam:topic_3569 ;
@@ -207362,7 +208648,7 @@ Our principal objective with GRooT is to contribute towards the inclusion of roo
     biotools:primaryContact "Waibhav Tembe" .
 
 <https://bio.tools/g-tric> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0780,
@@ -207382,7 +208668,7 @@ Runnable JAR to run the G-Tric's GUI version.""" ;
     sc:url "https://github.com/jplobo1313/G-Tric" .
 
 <https://bio.tools/g-tris> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0102,
@@ -207397,7 +208683,7 @@ Runnable JAR to run the G-Tric's GUI version.""" ;
     sc:url "https://bitbucket.org/bereste/g-tris" .
 
 <https://bio.tools/g2d> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0634,
@@ -207423,7 +208709,7 @@ Runnable JAR to run the G-Tric's GUI version.""" ;
     biotools:primaryContact "Support" .
 
 <https://bio.tools/g2g> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0102,
@@ -207441,7 +208727,7 @@ Runnable JAR to run the G-Tric's GUI version.""" ;
     sc:url "http://bnet.cs.tau.ac.il/g2g/" .
 
 <https://bio.tools/g2s> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3174,
         edam:topic_3474,
         edam:topic_3697,
@@ -207454,8 +208740,33 @@ Runnable JAR to run the G-Tric's GUI version.""" ;
     sc:name "G2S" ;
     sc:url "https://github.com/simonerampelli/g2s" .
 
+<https://bio.tools/g4boost> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0082,
+        edam:topic_0097,
+        edam:topic_0166,
+        edam:topic_0780,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1186/S12859-022-04782-Z>,
+        "pmcid:PMC9206279",
+        "pubmed:35717172" ;
+    sc:description "A machine learning-based tool for quadruplex identification and stability prediction." ;
+    sc:featureList edam:operation_0267,
+        edam:operation_0279,
+        edam:operation_0303,
+        edam:operation_0429,
+        edam:operation_3659 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "G4Boost" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/hbusra/G4Boost.git" .
+
 <https://bio.tools/g4dbr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0593,
@@ -207472,7 +208783,7 @@ Runnable JAR to run the G-Tric's GUI version.""" ;
     sc:url "https://github.com/EricLarG4/g4dbr" .
 
 <https://bio.tools/g4detector> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0099,
@@ -207489,7 +208800,7 @@ Runnable JAR to run the G-Tric's GUI version.""" ;
     sc:url "http://github.com/OrensteinLab/G4detector" .
 
 <https://bio.tools/g4killer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0199,
@@ -207502,8 +208813,41 @@ Runnable JAR to run the G-Tric's GUI version.""" ;
     sc:name "G4Killer" ;
     sc:url "http://bioinformatics.ibp.cz/#/analyse/g4-killer" .
 
+<https://bio.tools/g4ldb> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2099" ;
+            sc:name "Name" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2301" ;
+            sc:name "SMILES string" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:name "Sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0593,
+        edam:topic_0749,
+        edam:topic_2275,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAB952>,
+        "pmcid:PMC8728129",
+        "pubmed:34718746" ;
+    sc:description "A database for discovering and studying G-quadruplex and i-Motif ligands." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_0478,
+        edam:operation_2422,
+        edam:operation_4009 ;
+    sc:isAccessibleForFree true ;
+    sc:name "G4LDB" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareVersion "2.2" ;
+    sc:url "http://www.g4ldb.com" .
+
 <https://bio.tools/gFACs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_3320,
@@ -207517,25 +208861,37 @@ Runnable JAR to run the G-Tric's GUI version.""" ;
     sc:name "gFACs" ;
     sc:url "https://gitlab.com/PlantGenomicsLab/gFACs" .
 
-<https://bio.tools/gPET> a sc:SoftwareApplication ;
-    sc:additionalType "Command-line tool" ;
-    sc:applicationSubCategory edam:topic_3315,
-        edam:topic_3318,
-        edam:topic_3452 ;
-    sc:citation <https://doi.org/10.1088/1361-6560/AB5610>,
-        "pubmed:31711051" ;
-    sc:description """A GPU-based, accurate and efficient Monte Carlo simulation tool for PET.
-
-Monte Carlo (MC) simulation method plays an essential role in the refinement and development of positron emission tomography (PET) systems. However, most existing MC simulation packages suffer from long execution time for practical PET simulations. To fully address this issue, we developed and validated gPET, a graphics processing unit (GPU)-based MC simulation tool for PET. gPET was built on the NVidia CUDA platform. The simulation process was modularized into three functional parts and carried out by the GPU parallel threads: (1) source management, including positron decay, transport and annihilation; (2) gamma transport inside the phantom; and (3) signal detection and processing inside the detector. A hybrid of voxelized (for patient phantoms) and parametrized (for detectors) geometries were employed to sufficiently support particle navigations.
-
-||| HOMEPAGE MISSING!""" ;
-    sc:featureList edam:operation_3454,
-        edam:operation_3891 ;
-    sc:name "gPET" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31711051" .
+<https://bio.tools/ga4gh> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Suite",
+        "Web application",
+        "Workflow" ;
+    sc:applicationSubCategory edam:topic_0622,
+        edam:topic_2640,
+        edam:topic_3305,
+        edam:topic_3337,
+        edam:topic_3577 ;
+    sc:citation <https://doi.org/10.1016/J.XGEN.2021.100029>,
+        "pmcid:PMC8774288",
+        "pubmed:35072136" ;
+    sc:description "The GA4GH Toolkit outlines a suite of secure standards and frameworks that will enable more meaningful research and patient data harmonization and sharing. This suite addresses a variety of challenges across the data sharing life cycle and is applicable across the world’s accessible medical and patient-centered systems, knowledgebases, and raw data sources." ;
+    sc:featureList edam:operation_3196,
+        edam:operation_3283,
+        edam:operation_3435,
+        edam:operation_3436,
+        edam:operation_3761 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Apache-2.0" ;
+    sc:name "GA4GH" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://www.amed.go.jp/en/aboutus/collaboration/ga4gh_gem_japan.html> ;
+    sc:url "https://www.ga4gh.org" .
 
 <https://bio.tools/ga4gh_beacon> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web API",
         "Web application" ;
@@ -207559,7 +208915,7 @@ Monte Carlo (MC) simulation method plays an essential role in the refinement and
     sc:url "https://beacon-network.org//#/" .
 
 <https://bio.tools/ga4ghclient> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:description "It provides an easy way to access public data servers through Global Alliance for Genomics and Health (GA4GH) genomics API. It provides low-level access to GA4GH API and translates response data into Bioconductor-based class objects." ;
@@ -207575,7 +208931,7 @@ Monte Carlo (MC) simulation method plays an essential role in the refinement and
     biotools:primaryContact "Welliton Souza" .
 
 <https://bio.tools/ga4ghshiny> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:description "It provides an easy way to interact with data servers based on Global Alliance for Genomics and Health (GA4GH) genomics API through a Shiny application. It also integrates with Beacon Network." ;
@@ -207591,7 +208947,7 @@ Monte Carlo (MC) simulation method plays an essential role in the refinement and
     biotools:primaryContact "Welliton Souza" .
 
 <https://bio.tools/gabc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0659,
@@ -207610,7 +208966,7 @@ The Genomic Atlas of Breast Cancer — the non-coding theme.""" ;
     sc:url "http://www.bio-bigdata.net/GABC/" .
 
 <https://bio.tools/gabi-kat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0199,
@@ -207628,8 +208984,31 @@ The Genomic Atlas of Breast Cancer — the non-coding theme.""" ;
     sc:url "http://www.gabi-kat.de/" ;
     biotools:primaryContact "Info" .
 
+<https://bio.tools/gabola> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0196,
+        edam:topic_0203,
+        edam:topic_0769,
+        edam:topic_3512,
+        edam:topic_3673 ;
+    sc:citation <https://doi.org/10.1101/2021.09.07.459217> ;
+    sc:description "GABOLA is an integrated solution of Genome de novo Assembly aimed at Precision Medicine and Genome Breeding. The core concept is to fill in both intra and inter-scaffold gaps mainly based on 10x Genomics linked reads. GABOLA is a highly-flexible tool, it can also be used with TGS Sequencing long reads and other Gap-Filling techniques." ;
+    sc:featureList edam:operation_0524,
+        edam:operation_0525,
+        edam:operation_3200,
+        edam:operation_3216,
+        edam:operation_3227 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "GABOLA" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/lsbnb/gabola" .
+
 <https://bio.tools/gac> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite",
         "Web application" ;
     sc:applicationSubCategory edam:topic_3303,
@@ -207644,7 +209023,7 @@ The Genomic Atlas of Breast Cancer — the non-coding theme.""" ;
     sc:url "http://bbisr.shinyapps.winship.emory.edu/GAC/" .
 
 <https://bio.tools/gacal> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:citation <https://doi.org/10.1007/978-3-030-45237-7_26>,
         "pmcid:PMC7480696" ;
@@ -207656,8 +209035,35 @@ GACAL verifies C programs by searching over the space of possible invariants, us
     sc:name "GACAL" ;
     sc:url "https://gitlab.com/acl2s/conjecture-generation/gacal" .
 
+<https://bio.tools/gacorbang_88_link_alternatif_joker138> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:description "GACORBANG 88 | LINK LOGIN JOKER138 | DAFTAR JOKER388 | DEPOSIT PULSA TANPA POTONGAN" ;
+    sc:name "GACORBANG 88 LINK ALTERNATIF JOKER138" ;
+    sc:url "https://judionline.vip/" .
+
+<https://bio.tools/gadds> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0089,
+        edam:topic_3070,
+        edam:topic_3071 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC362>,
+        "pmcid:PMC9344842",
+        "pubmed:35639939" ;
+    sc:description "A decentralized FAIR platform to facilitate data sharing in the life sciences." ;
+    sc:featureList edam:operation_2422,
+        edam:operation_2428,
+        edam:operation_3283 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Apache-2.0" ;
+    sc:name "GADDS" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/pavelvazquez/GADDS" .
+
 <https://bio.tools/gadem> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3168,
@@ -207674,7 +209080,7 @@ GACAL verifies C programs by searching over the space of possible invariants, us
     biotools:primaryContact "Leping Li" .
 
 <https://bio.tools/gads> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3053,
@@ -207689,7 +209095,7 @@ GACAL verifies C programs by searching over the space of possible invariants, us
     sc:url "http://mga.bionet.nsc.ru/soft/index.html" .
 
 <https://bio.tools/gaemda> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_0659,
@@ -207706,7 +209112,7 @@ GACAL verifies C programs by searching over the space of possible invariants, us
     sc:url "https://github.com/chimianbuhetang/GAEMDA" .
 
 <https://bio.tools/gaemr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196 ;
     sc:description "GAEMR (Genome Assembly Evaluation Metrics and Reportin) is a complete genome analysis package that helps you evaluate and report on a genome assembly’s completeness, correctness, and contiguity." ;
@@ -207720,7 +209126,7 @@ GACAL verifies C programs by searching over the space of possible invariants, us
     sc:url "http://www.broadinstitute.org/software/gaemr/" .
 
 <https://bio.tools/gaev> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Script" ;
     sc:applicationSubCategory edam:topic_0085,
@@ -207737,7 +209143,7 @@ GACAL verifies C programs by searching over the space of possible invariants, us
     sc:url "https://github.com/UtaDaphniaLab/Gene_Annotation_Easy_Viewer" .
 
 <https://bio.tools/gaeval> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0114 ;
@@ -207750,7 +209156,7 @@ GACAL verifies C programs by searching over the space of possible invariants, us
     sc:url "http://www.plantgdb.org/GAEVAL/docs/index.html" .
 
 <https://bio.tools/gafs-8> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3068,
@@ -207768,7 +209174,7 @@ GACAL verifies C programs by searching over the space of possible invariants, us
     sc:url "https://asdmeasures.shinyapps.io/alexithymia" .
 
 <https://bio.tools/gag> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0622,
@@ -207786,7 +209192,7 @@ GACAL verifies C programs by searching over the space of possible invariants, us
     biotools:primaryContact "Scott M Geib" .
 
 <https://bio.tools/gag-db> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0219,
@@ -207810,7 +209216,7 @@ GAG BUILDER : A user friendly tool to build 3D structures of GlycosAminoGlycans.
     sc:url "https://www.gagdb.glycopedia.eu" .
 
 <https://bio.tools/gaga> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203 ;
@@ -207828,7 +209234,7 @@ GAG BUILDER : A user friendly tool to build 3D structures of GlycosAminoGlycans.
     biotools:primaryContact "David Rossell" .
 
 <https://bio.tools/gage> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0602,
@@ -207851,30 +209257,30 @@ GAG BUILDER : A user friendly tool to build 3D structures of GlycosAminoGlycans.
 
 <https://bio.tools/gaggle> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0842" ;
-            sc:name "Identifier" ;
-            sc:sameAs "http://edamontology.org/data_0842" ],
+            sc:additionalType "http://edamontology.org/data_2082" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Matrix" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2082" ;
-            sc:name "Matrix" ;
-            sc:sameAs "http://edamontology.org/data_2082" ],
+            sc:additionalType "http://edamontology.org/data_0842" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Identifier" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ] ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Pathway or network" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ],
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Pathway or network" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2082" ;
-            sc:name "Matrix" ;
-            sc:sameAs "http://edamontology.org/data_2082" ],
+            sc:additionalType "http://edamontology.org/data_2082" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Matrix" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0842" ;
-            sc:name "Identifier" ;
-            sc:sameAs "http://edamontology.org/data_0842" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0842" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Identifier" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3366 ;
@@ -207894,18 +209300,18 @@ GAG BUILDER : A user friendly tool to build 3D structures of GlycosAminoGlycans.
 
 <https://bio.tools/gaia> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1017" ;
-            sc:name "Sequence range" ;
-            sc:sameAs "http://edamontology.org/data_1017" ] ;
+            sc:additionalType "http://edamontology.org/data_1017" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Sequence range" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1017" ;
-            sc:name "Sequence range" ;
-            sc:sameAs "http://edamontology.org/data_1017" ],
+            sc:additionalType "http://edamontology.org/data_1017" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Sequence range" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1772" ;
-            sc:name "Score" ;
-            sc:sameAs "http://edamontology.org/data_1772" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1772" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Score" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0199,
@@ -207924,7 +209330,7 @@ GAG BUILDER : A user friendly tool to build 3D structures of GlycosAminoGlycans.
     biotools:primaryContact "S. Morganella" .
 
 <https://bio.tools/gaia-metagenome> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3174,
         edam:topic_3308,
@@ -207950,8 +209356,28 @@ GAIA has a reliable upload system with integrated recovery and resume functions
     sc:url "http://gaia.sequentiabiotech.com" ;
     biotools:primaryContact <https://orcid.org/0000-0003-3324-5912> .
 
+<https://bio.tools/gaia_data_base> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0099,
+        edam:topic_0621,
+        edam:topic_3308 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAC657>,
+        "pubmed:35971612" ;
+    sc:description "GAIA (G-quAdruplexes In Alive creature) is a user-friendly database with a web interface that can be used to query a data set containing pG4s in diverse species from all three living kingdoms." ;
+    sc:featureList edam:operation_0224 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Other" ;
+    sc:name "GAIA" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://gaia.cobius.usherbrooke.ca/helpPage> ;
+    sc:url "https://gaia.cobius.usherbrooke.ca" .
+
 <https://bio.tools/gaisr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0659,
@@ -207967,7 +209393,7 @@ GAIA has a reliable upload system with integrated recovery and resume functions
     sc:url "https://github.com/jsa-aerial/gaisr" .
 
 <https://bio.tools/gait> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3053,
@@ -207983,7 +209409,7 @@ GAIA has a reliable upload system with integrated recovery and resume functions
     biotools:primaryContact "Support" .
 
 <https://bio.tools/gait-gm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application",
         "Workflow" ;
@@ -208006,7 +209432,7 @@ A python package gait-gm based on this project is avialable from PyPI.""" ;
     sc:url "https://github.com/SECIMTools/gait-gm" .
 
 <https://bio.tools/gala> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
@@ -208023,7 +209449,7 @@ Abstract High-quality genome assembly has wide applications in genetics and medi
     sc:url "https://github.com/ganlab/gala" .
 
 <https://bio.tools/galactic> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Bioinformatics portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0218,
@@ -208043,14 +209469,14 @@ Galactic lets you build intuitive queries and explore the results through differ
 
 <https://bio.tools/galactic_circos> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ] ;
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:encodingFormat "http://edamontology.org/format_3006" ;
+            sc:name "Sequence features" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1274" ;
-            sc:name "Map" ;
-            sc:sameAs "http://edamontology.org/data_1274" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1274" ;
+            sc:encodingFormat "http://edamontology.org/format_3604" ;
+            sc:name "Map" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:citation <https://doi.org/10.1093/gigascience/giaa065> ;
     sc:description "Galactic Circos is a Galaxy wrapper providing a GUI for the Circos tool. Circos allows visualizing data in a circular format." ;
@@ -208063,7 +209489,7 @@ Galactic lets you build intuitive queries and explore the results through differ
     sc:url "https://toolshed.g2.bx.psu.edu/view/iuc/circos/" .
 
 <https://bio.tools/galactosemia_proteins_database> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
@@ -208090,7 +209516,7 @@ Galactic lets you build intuitive queries and explore the results through differ
     biotools:primaryContact "Anna Marabotti" .
 
 <https://bio.tools/galaxy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0085,
         edam:topic_0196,
@@ -208113,7 +209539,7 @@ Galactic lets you build intuitive queries and explore the results through differ
     biotools:primaryContact "Galaxy support" .
 
 <https://bio.tools/galaxy-dl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0769,
@@ -208132,7 +209558,7 @@ Galactic lets you build intuitive queries and explore the results through differ
     sc:url "https://github.com/anuprulez/galaxy_tool_recommendation" .
 
 <https://bio.tools/galaxy-ml> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0769,
@@ -208150,7 +209576,7 @@ Galaxy-ML is a web machine learning end-to-end pipeline building framework, with
     sc:url "https://ml.usegalaxy.eu" .
 
 <https://bio.tools/galaxy_australia> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API",
         "Web application",
         "Workbench" ;
@@ -208176,18 +209602,18 @@ In addition to being accessible through a web interface, Galaxy Australia can al
 
 <https://bio.tools/galaxy_image_analysis> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ] ;
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3591" ;
+            sc:name "Image" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0920" ;
-            sc:name "Genotype/phenotype report" ;
-            sc:sameAs "http://edamontology.org/data_0920" ],
+            sc:additionalType "http://edamontology.org/data_0920" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Genotype/phenotype report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_2333" ;
+            sc:name "Image" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_3382 ;
@@ -208203,7 +209629,7 @@ In addition to being accessible through a web interface, Galaxy Australia can al
     biotools:primaryContact "Thomas Wollmann" .
 
 <https://bio.tools/galaxy_interactomix> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0602,
@@ -208221,7 +209647,7 @@ Protein interactions play a crucial role among the different functions of a cell
     sc:url "http://galaxy.interactomix.com" .
 
 <https://bio.tools/galaxydock> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0128,
@@ -208236,8 +209662,31 @@ Protein interactions play a crucial role among the different functions of a cell
     sc:softwareHelp <http://galaxy.seoklab.org/softwares/galaxydock.html> ;
     sc:url "http://galaxy.seoklab.org/softwares/galaxydock.html" .
 
+<https://bio.tools/galaxydomdock> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0196,
+        edam:topic_0736,
+        edam:topic_2275 ;
+    sc:citation <https://doi.org/10.1016/J.JMB.2022.167508>,
+        "pubmed:35662464" ;
+    sc:description "An Ab Initio Domain-domain Docking Web Server for Multi-domain Protein Structure Prediction." ;
+    sc:featureList edam:operation_0303,
+        edam:operation_0476,
+        edam:operation_3899 ;
+    sc:isAccessibleForFree true ;
+    sc:name "GalaxyDomDock" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://galaxy.seoklab.org/domdock" .
+
 <https://bio.tools/galaxyheteromer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_2275,
@@ -208256,22 +209705,21 @@ Protein interactions play a crucial role among the different functions of a cell
 
 <https://bio.tools/galaxyhomomer> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ],
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein structure" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1537" ;
-            sc:name "Protein structure report" ;
-            sc:sameAs "http://edamontology.org/data_1537" ],
+            sc:additionalType "http://edamontology.org/data_1537" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Protein structure report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:name "Protein structure" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0736,
@@ -208288,7 +209736,7 @@ Protein interactions play a crucial role among the different functions of a cell
     sc:url "http://galaxy.seoklab.org/homomer" .
 
 <https://bio.tools/galaxyrefine> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -208311,7 +209759,7 @@ Protein interactions play a crucial role among the different functions of a cell
     biotools:primaryContact "GalaxyRefine Support" .
 
 <https://bio.tools/galaxysagittarius> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0140,
@@ -208332,7 +209780,7 @@ A web server for protein structure prediction, refinement, and related methods."
     sc:url "http://galaxy.seoklab.org/sagittarius" .
 
 <https://bio.tools/galaxysite> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0209,
@@ -208356,7 +209804,7 @@ A web server for protein structure prediction, refinement, and related methods."
     biotools:primaryContact "GalaxySite Support" .
 
 <https://bio.tools/galaxytrakr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3174,
@@ -208374,8 +209822,33 @@ A web server for protein structure prediction, refinement, and related methods."
     sc:softwareHelp <https://s3.amazonaws.com/cfsan-genometrakr-docs/user+guide/Galaxy+Genome+Trakr+User+Guide.pdf> ;
     sc:url "https://www.galaxytrakr.org" .
 
+<https://bio.tools/galaxywater-cnn> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein structure" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0128,
+        edam:topic_0166,
+        edam:topic_3047,
+        edam:topic_3300,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1021/ACS.JCIM.2C00306>,
+        "pubmed:35749367" ;
+    sc:description "Prediction of Water Positions on the Protein Structure by a 3D-Convolutional Neural Network." ;
+    sc:featureList edam:operation_0387,
+        edam:operation_0474,
+        edam:operation_2492 ;
+    sc:isAccessibleForFree true ;
+    sc:name "GalaxyWater-CNN" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://galaxy.seoklab.org/gwcnn" .
+
 <https://bio.tools/galaxywater-wkgb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0130,
         edam:topic_0166,
@@ -208395,7 +209868,7 @@ A web server for protein structure prediction, refinement, and related methods."
     biotools:primaryContact <https://orcid.org/0000-0002-1419-9888> .
 
 <https://bio.tools/galaxyweb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -208418,7 +209891,7 @@ A web server for protein structure prediction, refinement, and related methods."
     biotools:primaryContact "GalaxyWEB Support" .
 
 <https://bio.tools/galgo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_2640,
@@ -208437,7 +209910,7 @@ Galgo: An evolutionary machine learning algorithm for the identification and stu
     sc:url "http://www.github.com/harpomaxx/galgo" .
 
 <https://bio.tools/galign> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2885 ;
     sc:citation "pubmed:19779626" ;
@@ -208450,7 +209923,7 @@ Galgo: An evolutionary machine learning algorithm for the identification and stu
     biotools:primaryContact "Galign Support" .
 
 <https://bio.tools/gallo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2885,
@@ -208470,7 +209943,7 @@ GALLO: Genomic Annotation in Livestock for positional candidate LOci""" ;
     sc:url "https://github.com/pablobio/GALLO" .
 
 <https://bio.tools/galru> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
@@ -208485,7 +209958,7 @@ GALLO: Genomic Annotation in Livestock for positional candidate LOci""" ;
     sc:url "https://github.com/quadram-institute-bioscience/galru" .
 
 <https://bio.tools/gam-ngs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3168 ;
@@ -208499,8 +209972,26 @@ GALLO: Genomic Annotation in Livestock for positional candidate LOci""" ;
     sc:softwareVersion "1.1b" ;
     sc:url "http://www.csc.kth.se/~vezzi/software/" .
 
+<https://bio.tools/gamacomet> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0654,
+        edam:topic_2269,
+        edam:topic_3382 ;
+    sc:citation <https://doi.org/10.3390/DIAGNOSTICS12082002>,
+        "pmcid:PMC9407097",
+        "pubmed:36010352" ;
+    sc:description "GamaComet is a web-based buccal mucosa comet assay detection and classification tool, which purpose is to measure the amount of damage contained within the DNA." ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "GamaComet" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://bioinformatics.mipa.ugm.ac.id/gamacomet/" .
+
 <https://bio.tools/gambit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0092,
@@ -208519,7 +210010,7 @@ GALLO: Genomic Annotation in Livestock for positional candidate LOci""" ;
     biotools:primaryContact "Gambit Issue Page" .
 
 <https://bio.tools/game> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2258,
         edam:topic_3172,
@@ -208536,8 +210027,28 @@ GALLO: Genomic Annotation in Livestock for positional candidate LOci""" ;
     sc:url "https://github.com/CMDM-Lab/GAME" ;
     biotools:primaryContact "Yufeng J. Tseng" .
 
+<https://bio.tools/gamerank> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_3316,
+        edam:topic_3344 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC552>,
+        "pubmed:35951761" ;
+    sc:description "The GameRank package is an R package that implements functions for variable and feature selection to create predictive models." ;
+    sc:featureList edam:operation_2421,
+        edam:operation_2423,
+        edam:operation_2426,
+        edam:operation_3936 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "GameRank" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/Genentech/GameRank" .
+
 <https://bio.tools/gametes> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654,
@@ -208554,7 +210065,7 @@ GALLO: Genomic Annotation in Livestock for positional candidate LOci""" ;
     sc:url "http://sourceforge.net/projects/gametes/?source=navbar" .
 
 <https://bio.tools/gamibhear> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0621,
@@ -208572,7 +210083,7 @@ GALLO: Genomic Annotation in Livestock for positional candidate LOci""" ;
     sc:url "https://bitbucket.org/schwarzlab/gamibhear" .
 
 <https://bio.tools/gaml> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0196,
@@ -208590,7 +210101,7 @@ GALLO: Genomic Annotation in Livestock for positional candidate LOci""" ;
         "Tomáš Vinař" .
 
 <https://bio.tools/gamma> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0199,
@@ -208607,8 +210118,21 @@ GALLO: Genomic Annotation in Livestock for positional candidate LOci""" ;
     sc:url "https://github.com/rastanton/GAMMA" ;
     biotools:primaryContact "Richard A Stanton" .
 
+<https://bio.tools/gammapred> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:description "The GammaPred server predicts the gamma turn residues in the given protein sequence." ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "gammapred" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/gammapred/> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/gammapred/" .
+
 <https://bio.tools/gamola2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3168,
@@ -208624,7 +210148,7 @@ GALLO: Genomic Annotation in Livestock for positional candidate LOci""" ;
     biotools:primaryContact "Eric Altermann" .
 
 <https://bio.tools/gamp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3168,
@@ -208640,8 +210164,29 @@ GALLO: Genomic Annotation in Livestock for positional candidate LOci""" ;
     sc:url "http://research.fhcrc.org/wu/en/software.html#GAMP" ;
     biotools:primaryContact "Michael Wu Group" .
 
+<https://bio.tools/gamut> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0625,
+        edam:topic_2885,
+        edam:topic_3071,
+        edam:topic_3518 ;
+    sc:citation <https://doi.org/10.1007/s12038-021-00213-y>,
+        "pubmed:34544908" ;
+    sc:description "Platform for addressing high throughput analysis and management of variant data produced by Next Generation Sequencing techniques." ;
+    sc:featureList edam:operation_3196,
+        edam:operation_3359,
+        edam:operation_3557 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "GAMUT" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/bioinformatics-cdac/gamut" .
+
 <https://bio.tools/gan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0634,
@@ -208664,7 +210209,7 @@ StarGAN - Official PyTorch Implementation.""" ;
     sc:url "http://github.com/jlianglab/Fixed-Point-GAN" .
 
 <https://bio.tools/gan-gmhi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0634,
@@ -208685,14 +210230,13 @@ StarGAN - Official PyTorch Implementation.""" ;
 
 <https://bio.tools/ganesh> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Gene expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ] ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Gene expression data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1246" ;
-            sc:name "Sequence cluster (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1246" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1246" ;
+            sc:name "Sequence cluster (nucleic acid)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btm562>,
@@ -208709,8 +210253,23 @@ StarGAN - Official PyTorch Implementation.""" ;
     sc:url "http://bioinformatics.psb.ugent.be/software/details/GaneSh" ;
     biotools:primaryContact <http://orcid.org/0000-0003-4327-3730> .
 
+<https://bio.tools/gani> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3301 ;
+    sc:citation <https://doi.org/10.1093/nar/gkv657> ;
+    sc:description "Whole-genome based Average Nucleotide Identity (gANI) is an effort to delineate species-level diversity among prokaryotic organisms in the genomic era. Microorganisms are evolving continuously and the signature of evolution is observed across its entire genome. As such, a single gene or a select group of marker genes should not be used to infer new species as it may not be a correct representation in the evolutionary landscape. Especially with the wealth of genomic information currently available, one needs to graduate from the gene-centric 16S based classification to a holistic, genome-based method." ;
+    sc:isAccessibleForFree true ;
+    sc:license "Other" ;
+    sc:name "gANI" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://ani.jgi.doe.gov/html/home.php" ;
+    biotools:primaryContact "Neha J. Varghese" .
+
 <https://bio.tools/ganon> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0621,
@@ -208730,7 +210289,7 @@ benchmarking pipeline used to evaluate ganon as presented in https://www.biorxiv
     sc:url "https://gitlab.com/rki_bioinformatics/ganon" .
 
 <https://bio.tools/gap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -208747,7 +210306,7 @@ benchmarking pipeline used to evaluate ganon as presented in https://www.biorxiv
     sc:url "http://www.iitm.ac.in/bioinfo/GAP/" .
 
 <https://bio.tools/gapFinisher> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0769,
         edam:topic_3673 ;
@@ -208761,8 +210320,19 @@ benchmarking pipeline used to evaluate ganon as presented in https://www.biorxiv
     sc:name "gapFinisher" ;
     sc:url "http://www.github.com/kammoji/gapFinisher" .
 
+<https://bio.tools/gapfiller> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:applicationSubCategory edam:topic_0196,
+        edam:topic_0622 ;
+    sc:citation <https://doi.org/10.1186/gb-2012-13-6-r56> ;
+    sc:description "GapFiller is an automated strategy, called to reliably close gaps within scaffolds using paired reads." ;
+    sc:featureList edam:operation_3183 ;
+    sc:name "Gapfiller" ;
+    sc:url "http://www.baseclear.com" ;
+    biotools:primaryContact "Walter Pirovano" .
+
 <https://bio.tools/gapit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3517 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/bts444> ;
@@ -208777,7 +210347,7 @@ benchmarking pipeline used to evaluate ganon as presented in https://www.biorxiv
     sc:url "http://www.maizegenetics.net/gapit" .
 
 <https://bio.tools/gapp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0203,
@@ -208796,7 +210366,7 @@ benchmarking pipeline used to evaluate ganon as presented in https://www.biorxiv
     biotools:primaryContact "Feng Ge" .
 
 <https://bio.tools/gaprediction> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3399 ;
@@ -208814,7 +210384,7 @@ benchmarking pipeline used to evaluate ganon as presented in https://www.biorxiv
     biotools:primaryContact "Jon Bohlin" .
 
 <https://bio.tools/gapseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0625,
@@ -208836,7 +210406,7 @@ gapseq is designed to combine metabolic pathway analysis with metabolic network
     sc:url "https://github.com/jotech/gapseq" .
 
 <https://bio.tools/garfield> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3517 ;
@@ -208854,7 +210424,7 @@ gapseq is designed to combine metabolic pathway analysis with metabolic network
     biotools:primaryContact "Valentina Iotchkova" .
 
 <https://bio.tools/garli> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0084 ;
@@ -208871,13 +210441,11 @@ gapseq is designed to combine metabolic pathway analysis with metabolic network
     sc:url "https://code.google.com/archive/p/garli/" .
 
 <https://bio.tools/garlic> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_2275,
         edam:topic_2814 ;
-    sc:citation <https://doi.org/10.1099/00221287-108-2-213>,
-        "pubmed:102733" ;
     sc:description "A free molecular visualization program for protein structure, DNA structure, PDB, molecular rendering and biological macromolecule in unix, linux system." ;
     sc:featureList edam:operation_0570 ;
     sc:name "Garlic" ;
@@ -208888,7 +210456,7 @@ gapseq is designed to combine metabolic pathway analysis with metabolic network
     sc:url "http://www.zucic.org/garlic/index.html" .
 
 <https://bio.tools/garlic_homozygosity> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0625,
@@ -208905,8 +210473,24 @@ gapseq is designed to combine metabolic pathway analysis with metabolic network
     sc:url "https://github.com/szpiech/garlic" ;
     biotools:primaryContact "Zachary Szpiech" .
 
+<https://bio.tools/garm> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workflow" ;
+    sc:applicationSubCategory edam:topic_0196,
+        edam:topic_0622,
+        edam:topic_0769 ;
+    sc:citation <https://doi.org/10.2174/1568026613666131204110628> ;
+    sc:description "GARM (Genome Assembler, Reconcilation and Merging) is a new software pipeline to merge and reconcile assemblies from different algorithms or sequencing technologies. It relies on the observation that a combination of sequencing methods will work better together to reconstruct a genome in its totality, overcoming the limitations of each technology and assembly method if they were used in isolation. The pipeline is based on perl scripts and third-party open source software like the AMOS package." ;
+    sc:featureList edam:operation_0310 ;
+    sc:isAccessibleForFree true ;
+    sc:license "BSD-3-Clause" ;
+    sc:name "GARM" ;
+    sc:url "http://garm-meta-assem.sourceforge.net" ;
+    biotools:primaryContact "Alejandro Sanchez-Flores",
+        "Karel Estrada" .
+
 <https://bio.tools/garn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0097,
@@ -208925,14 +210509,12 @@ gapseq is designed to combine metabolic pathway analysis with metabolic network
 
 <https://bio.tools/garnier> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2886" ;
-            sc:name "Protein sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2886" ] ;
+            sc:additionalType "http://edamontology.org/data_2886" ;
+            sc:name "Protein sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:name "Protein features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3542 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -208962,7 +210544,7 @@ gapseq is designed to combine metabolic pathway analysis with metabolic network
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/garnier.html" .
 
 <https://bio.tools/gars> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0114 ;
     sc:description "Feature selection aims to identify and remove redundant, irrelevant and noisy variables from high-dimensional datasets. Selecting informative features affects the subsequent classification and regression analyses by improving their overall performances. It is an innovative implementation of a genetic algorithm that selects robust features in high-dimensional and challenging datasets." ;
@@ -208979,8 +210561,29 @@ gapseq is designed to combine metabolic pathway analysis with metabolic network
     sc:url "http://bioconductor.org/packages/release/bioc/html/GARS.html" ;
     biotools:primaryContact "Mattia Chiesa" .
 
+<https://bio.tools/gasa> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0209,
+        edam:topic_3047,
+        edam:topic_3343,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1021/ACS.JCIM.2C00038>,
+        "pubmed:35675668" ;
+    sc:description "Organic Compound Synthetic Accessibility Prediction Based on the Graph Attention Mechanism." ;
+    sc:featureList edam:operation_3454,
+        edam:operation_3927,
+        edam:operation_4009 ;
+    sc:isAccessibleForFree true ;
+    sc:name "GASA" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://cadd.zju.edu.cn/gasa/" .
+
 <https://bio.tools/gasoline> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0602 ;
@@ -209000,7 +210603,7 @@ gapseq is designed to combine metabolic pathway analysis with metabolic network
     biotools:primaryContact "Giovanni Micale" .
 
 <https://bio.tools/gasphos> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0601,
         edam:topic_0634,
@@ -209019,7 +210622,7 @@ Human protein phosphorylation sites prediction by GA-aided ant colony system."""
     sc:url "http://predictor.nchu.edu.tw/GasPhos" .
 
 <https://bio.tools/gass> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -209035,8 +210638,29 @@ Human protein phosphorylation sites prediction by GA-aided ant colony system."""
     sc:softwareHelp <http://homepages.dcc.ufmg.br/~glpappa/gass/> ;
     sc:url "http://homepages.dcc.ufmg.br/~glpappa/gass/" .
 
+<https://bio.tools/gass-metal> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0199,
+        edam:topic_0749,
+        edam:topic_3474,
+        edam:topic_3534 ;
+    sc:citation <https://doi.org/10.1093/BIB/BBAC178>,
+        "pubmed:35595534" ;
+    sc:description "Identifying metal-binding sites on protein structures using genetic algorithms." ;
+    sc:featureList edam:operation_2421,
+        edam:operation_3896,
+        edam:operation_3898 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "GASS-Metal" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://gassmetal.unifei.edu.br" .
+
 <https://bio.tools/gass-web> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0821,
@@ -209054,18 +210678,18 @@ Human protein phosphorylation sites prediction by GA-aided ant colony system."""
 
 <https://bio.tools/gassst> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ],
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Nucleic acid sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ] ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Nucleic acid sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1383" ;
-            sc:name "Sequence alignment (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1383" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1383" ;
+            sc:encodingFormat "http://edamontology.org/format_2206" ;
+            sc:name "Sequence alignment (nucleic acid)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btq485> ;
@@ -209083,7 +210707,7 @@ Human protein phosphorylation sites prediction by GA-aided ant colony system."""
         "Guillaume Rizk" .
 
 <https://bio.tools/gast> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0637,
@@ -209098,7 +210722,7 @@ Human protein phosphorylation sites prediction by GA-aided ant colony system."""
     sc:url "http://vamps.mbl.edu/resources/software.php" .
 
 <https://bio.tools/gasv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0622,
@@ -209118,7 +210742,7 @@ Human protein phosphorylation sites prediction by GA-aided ant colony system."""
     biotools:primaryContact "GASV Support" .
 
 <https://bio.tools/gat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0622 ;
@@ -209134,7 +210758,7 @@ Human protein phosphorylation sites prediction by GA-aided ant colony system."""
     sc:url "https://github.com/AndreasHeger/gat" .
 
 <https://bio.tools/gat-fd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3300,
         edam:topic_3304,
@@ -209152,7 +210776,7 @@ Graph theoretical analysis of task-related functional dynamics (GAT-FD) is a sys
     sc:url "https://www.nitrc.org/projects/gat_fd" .
 
 <https://bio.tools/gat-li> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3334,
@@ -209172,7 +210796,7 @@ Graph theoretical analysis of task-related functional dynamics (GAT-FD) is a sys
     sc:url "https://github.com/largeapp/gat-li" .
 
 <https://bio.tools/gatb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3071,
@@ -209188,7 +210812,7 @@ Graph theoretical analysis of task-related functional dynamics (GAT-FD) is a sys
     sc:url "http://gatb.inria.fr/" .
 
 <https://bio.tools/gate> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0219,
@@ -209204,8 +210828,27 @@ Graph theoretical analysis of task-related functional dynamics (GAT-FD) is a sys
     sc:softwareHelp <http://systemsbio.ucsd.edu/GATE/Usage.htm> ;
     sc:url "http://systemsbio.ucsd.edu/GATE/" .
 
+<https://bio.tools/gatecda> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workbench" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0659,
+        edam:topic_2640,
+        edam:topic_3474,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.1186/S12859-022-04694-Y>,
+        "pmcid:PMC9066932",
+        "pubmed:35508967" ;
+    sc:description "A computational framework (GATECDA) based on graph attention auto-encoder to predict circRNA-drug sensitivity associations." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_0438,
+        edam:operation_2437 ;
+    sc:license "Not licensed" ;
+    sc:name "GATECDA" ;
+    sc:url "https://github.com/yjslzx/GATECDA" .
+
 <https://bio.tools/gatefinder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2229 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/bty430> ;
@@ -209223,7 +210866,7 @@ Graph theoretical analysis of task-related functional dynamics (GAT-FD) is a sys
     biotools:primaryContact "Nima Aghaeepour" .
 
 <https://bio.tools/gatekeeper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0102,
@@ -209240,8 +210883,29 @@ Graph theoretical analysis of task-related functional dynamics (GAT-FD) is a sys
         "Mohammed Alser",
         "Onur Mutlu" .
 
+<https://bio.tools/gatemultiplex> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0602,
+        edam:topic_0621,
+        edam:topic_3336,
+        edam:topic_3810,
+        edam:topic_3957 ;
+    sc:citation <https://doi.org/10.1186/S12915-021-01140-Y>,
+        "pmcid:PMC8461970",
+        "pubmed:34560855" ;
+    sc:description "Large-scale data analysis for robotic yeast one-hybrid platforms and multi-disciplinary studies using GateMultiplex." ;
+    sc:featureList edam:operation_4009 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "GateMultiplex" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/Woodformation1136/GateMultiplex" .
+
 <https://bio.tools/gatgnn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3314,
@@ -209261,7 +210925,7 @@ This software package implements our developed model GATGNN for improved inorgan
     sc:url "https://github.com/superlouis/GATGNN" .
 
 <https://bio.tools/gatk> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0199,
@@ -209286,14 +210950,14 @@ Version 4 (GATK4) is open-source at https://github.com/broadinstitute/gatk.""" ;
 
 <https://bio.tools/gatk-lodn> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1234" ;
-            sc:name "Sequence set (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1234" ] ;
+            sc:additionalType "http://edamontology.org/data_1234" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Sequence set (nucleic acid)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Sequence variations" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2533 ;
     sc:citation <https://doi.org/10.1186/s12859-016-1190-7>,
@@ -209313,66 +210977,66 @@ Version 4 (GATK4) is open-source at https://github.com/broadinstitute/gatk.""" ;
 
 <https://bio.tools/gatk_base_recalibrator> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
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         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
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         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
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         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
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         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
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         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
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-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
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         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
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         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ],
+            sc:additionalType "http://edamontology.org/data_0924" ;
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         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Sequence trace" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:citation <https://doi.org/10.1038/npre.2011.6107>,
@@ -209390,138 +211054,138 @@ Version 4 (GATK4) is open-source at https://github.com/broadinstitute/gatk.""" ;
 
 <https://bio.tools/gatk_depth_of_coverage> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ],
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Sequence trace" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
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@@ -209539,70 +211203,70 @@ Version 4 (GATK4) is open-source at https://github.com/broadinstitute/gatk.""" ;
 
 <https://bio.tools/gatk_haplotype_caller> a sc:SoftwareApplication ;
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@@ -209623,62 +211287,62 @@ Version 4 (GATK4) is open-source at https://github.com/broadinstitute/gatk.""" ;
 
 <https://bio.tools/gatk_indel_realigner> a sc:SoftwareApplication ;
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+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
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+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
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@@ -209697,46 +211361,46 @@ Version 4 (GATK4) is open-source at https://github.com/broadinstitute/gatk.""" ;
 
 <https://bio.tools/gatk_print_reads> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ],
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Sequence trace" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
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         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
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         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
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-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
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-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Sequence trace" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:citation <https://doi.org/10.1038/ng.806>,
@@ -209755,58 +211419,58 @@ Version 4 (GATK4) is open-source at https://github.com/broadinstitute/gatk.""" ;
 
 <https://bio.tools/gatk_realigner_target_creator> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence variations" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence variations" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ],
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Sequence trace" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ],
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-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
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-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Data" ],
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-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ],
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
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         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ],
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence variations" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Sequence trace" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:citation <https://doi.org/10.1038/npre.2011.6107>,
@@ -209824,46 +211488,46 @@ Version 4 (GATK4) is open-source at https://github.com/broadinstitute/gatk.""" ;
 
 <https://bio.tools/gatk_reduce_reads> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ],
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-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
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-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
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         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
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-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
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-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
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-            sc:sameAs "http://edamontology.org/data_0924" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Sequence trace" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
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     sc:citation <https://doi.org/10.1038/npre.2011.6107>,
@@ -209880,66 +211544,66 @@ Version 4 (GATK4) is open-source at https://github.com/broadinstitute/gatk.""" ;
 
 <https://bio.tools/gatk_unified_genotyper> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ],
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Sequence trace" ],
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-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence variations" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ],
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
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         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
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+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
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         [ a bsct:FormalParameter ;
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+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
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-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ] ;
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence variations" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
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-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence variations" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_2885,
@@ -209961,42 +211625,42 @@ Version 4 (GATK4) is open-source at https://github.com/broadinstitute/gatk.""" ;
 
 <https://bio.tools/gatk_validate_variants> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
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-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence variations" ],
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-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
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+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence variations" ],
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-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
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+            sc:additionalType "http://edamontology.org/data_0863" ;
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-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
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+            sc:encodingFormat "http://edamontology.org/format_3016" ;
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     bsc:output [ a bsct:FormalParameter ;
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-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_3168 ;
@@ -210016,66 +211680,66 @@ Version 4 (GATK4) is open-source at https://github.com/broadinstitute/gatk.""" ;
 
 <https://bio.tools/gatk_variant_annotator> a sc:SoftwareApplication ;
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-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ],
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+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
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+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
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@@ -210093,58 +211757,58 @@ Version 4 (GATK4) is open-source at https://github.com/broadinstitute/gatk.""" ;
 
 <https://bio.tools/gatk_variant_apply_recalibration> a sc:SoftwareApplication ;
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-            sc:name "Data" ;
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+            sc:additionalType "http://edamontology.org/data_0006" ;
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+            sc:additionalType "http://edamontology.org/data_0863" ;
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+            sc:additionalType "http://edamontology.org/data_0006" ;
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+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
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+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
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     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_3168 ;
@@ -210164,42 +211828,42 @@ Version 4 (GATK4) is open-source at https://github.com/broadinstitute/gatk.""" ;
 
 <https://bio.tools/gatk_variant_combine> a sc:SoftwareApplication ;
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+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence variations" ] ;
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@@ -210218,62 +211882,62 @@ Version 4 (GATK4) is open-source at https://github.com/broadinstitute/gatk.""" ;
 
 <https://bio.tools/gatk_variant_eval> a sc:SoftwareApplication ;
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+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
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-            sc:sameAs "http://edamontology.org/data_0006" ] ;
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+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_3168 ;
@@ -210293,46 +211957,46 @@ Version 4 (GATK4) is open-source at https://github.com/broadinstitute/gatk.""" ;
 
 <https://bio.tools/gatk_variant_filtration> a sc:SoftwareApplication ;
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+            sc:additionalType "http://edamontology.org/data_0006" ;
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-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence variations" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_3168 ;
@@ -210353,26 +212017,26 @@ Version 4 (GATK4) is open-source at https://github.com/broadinstitute/gatk.""" ;
 
 <https://bio.tools/gatk_variant_recalibrator> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence variations" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3508" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_3168 ;
@@ -210391,30 +212055,30 @@ Version 4 (GATK4) is open-source at https://github.com/broadinstitute/gatk.""" ;
 
 <https://bio.tools/gatk_variant_select> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ],
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence variations" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence variations" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0199 ;
@@ -210430,28 +212094,51 @@ Version 4 (GATK4) is open-source at https://github.com/broadinstitute/gatk.""" ;
     sc:url "https://software.broadinstitute.org/gatk/" ;
     biotools:primaryContact "Galaxy Support Team" .
 
+<https://bio.tools/gatom> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0153,
+        edam:topic_0154,
+        edam:topic_0602,
+        edam:topic_3172,
+        edam:topic_3407 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAC427>,
+        "pmcid:PMC9252739",
+        "pubmed:35639928" ;
+    sc:description "Omics-based identification of regulated metabolic modules in atom transition networks." ;
+    sc:featureList edam:operation_1812,
+        edam:operation_3223,
+        edam:operation_3660 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "GATOM" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://ctlab.itmo.ru/shiny/gatom" .
+
 <https://bio.tools/gaucho> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3113" ;
-            sc:name "Sample annotation" ;
-            sc:sameAs "http://edamontology.org/data_3113" ] ;
+            sc:additionalType "http://edamontology.org/data_3113" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Sample annotation" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ],
+            sc:additionalType "http://edamontology.org/data_0920" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Genotype/phenotype report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0920" ;
-            sc:name "Genotype/phenotype report" ;
-            sc:sameAs "http://edamontology.org/data_0920" ],
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Plot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2523" ;
-            sc:name "Phylogenetic data" ;
-            sc:sameAs "http://edamontology.org/data_2523" ],
+            sc:additionalType "http://edamontology.org/data_1636" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Heat map" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1636" ;
-            sc:name "Heat map" ;
-            sc:sameAs "http://edamontology.org/data_1636" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2523" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Phylogenetic data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0199,
@@ -210473,7 +212160,7 @@ Version 4 (GATK4) is open-source at https://github.com/broadinstitute/gatk.""" ;
         "Christopher Wardell" .
 
 <https://bio.tools/gauser> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_2269,
@@ -210489,7 +212176,7 @@ Package repository for the gauseR package.""" ;
     sc:url "http://github.com/adamtclark/gauseR" .
 
 <https://bio.tools/gausskern2d> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -210507,7 +212194,7 @@ Package repository for the gauseR package.""" ;
     biotools:primaryContact "Nils Persson" .
 
 <https://bio.tools/gaze> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0114,
         edam:topic_0654,
@@ -210521,24 +212208,8 @@ Package repository for the gauseR package.""" ;
     sc:softwareVersion "0.1" ;
     sc:url "http://www.sanger.ac.uk/science/tools/gaze" .
 
-<https://bio.tools/gazecom_annotations> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0610,
-        edam:topic_3382,
-        edam:topic_3417,
-        edam:topic_3474 ;
-    sc:citation <https://doi.org/10.1167/19.14.10>,
-        "pubmed:31830239" ;
-    sc:description """Characterizing and automatically detecting smooth pursuit in a large-scale ground-truth data set of dynamic natural scenes.
-
-Hand labelled eye movements and targets, together with the output of three automatic classification algorithms for the GazeCom data set""" ;
-    sc:featureList edam:operation_0337,
-        edam:operation_3799,
-        edam:operation_3891 ;
-    sc:name "gazecom_annotations" ;
-    sc:url "https://web.gin.g-node.org/ioannis.agtzidis/gazecom_annotations/" .
-
 <https://bio.tools/gazepath> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3277,
         edam:topic_3384,
@@ -210559,7 +212230,7 @@ Hand labelled eye movements and targets, together with the output of three autom
     biotools:primaryContact "Daan van Renswoude" .
 
 <https://bio.tools/gazer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3068,
         edam:topic_3382 ;
@@ -210576,7 +212247,7 @@ gazeR:A package to analyze gaze position and pupil size data.""" ;
     sc:url "https://github.com/dmirman/gazer" .
 
 <https://bio.tools/gb-easy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2885,
         edam:topic_3516 ;
@@ -210593,7 +212264,7 @@ gazeR:A package to analyze gaze position and pupil size data.""" ;
     biotools:primaryContact "Matthew E. Hudson" .
 
 <https://bio.tools/gbat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -210614,7 +212285,7 @@ The observation that disease-associated genetic variants typically reside outsid
     sc:url "https://github.com/xuanyao/GBAT" .
 
 <https://bio.tools/gbdt-lr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_0659,
@@ -210628,7 +212299,7 @@ The observation that disease-associated genetic variants typically reside outsid
     sc:url "https://github.com/Pualalala/GBDT-LR" .
 
 <https://bio.tools/gbif_occurrence_ws> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:description "Web service for occurrence data (specimens, observations) from the global GBIF data portal." ;
@@ -210642,7 +212313,7 @@ The observation that disease-associated genetic variants typically reside outsid
     sc:url "http://www.gbif.org/developer/summary" .
 
 <https://bio.tools/gbif_taxon_ws> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:description "Global Biodiversity Information Facility taxonomic web service from the centralised GBIF data portal." ;
@@ -210656,7 +212327,7 @@ The observation that disease-associated genetic variants typically reside outsid
     sc:url "http://www.gbif.org/developer/summary" .
 
 <https://bio.tools/gbirp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654,
@@ -210671,14 +212342,14 @@ The observation that disease-associated genetic variants typically reside outsid
 
 <https://bio.tools/gbis> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0968" ;
-            sc:name "Keyword" ;
-            sc:sameAs "http://edamontology.org/data_0968" ] ;
+            sc:additionalType "http://edamontology.org/data_0968" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Keyword" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2080" ;
-            sc:name "Database search results" ;
-            sc:sameAs "http://edamontology.org/data_2080" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2080" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Database search results" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0780 ;
     sc:citation <https://doi.org/10.3372/cediatom.116> ;
@@ -210695,26 +212366,28 @@ The observation that disease-associated genetic variants typically reside outsid
 
 <https://bio.tools/gblocks> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ],
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
-    sc:citation <https://doi.org/10.1093/nar/gkw343>,
-        <https://doi.org/10.7490/f1000research.1114334.1> ;
+    sc:citation <https://doi.org/10.1080/10635150701472164>,
+        <https://doi.org/10.1093/oxfordjournals.molbev.a026334>,
+        "pubmed:10742046",
+        "pubmed:17654362" ;
     sc:description "Cleaning aligned sequences." ;
     sc:featureList edam:operation_0258 ;
     sc:name "gblocks" ;
@@ -210724,26 +212397,26 @@ The observation that disease-associated genetic variants typically reside outsid
 
 <https://bio.tools/gblocks_oneclick> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ],
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1093/nar/gkw343>,
@@ -210756,7 +212429,7 @@ The observation that disease-associated genetic variants typically reside outsid
     biotools:primaryContact "Galaxy Support Team" .
 
 <https://bio.tools/gboosting> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654,
@@ -210773,7 +212446,7 @@ The observation that disease-associated genetic variants typically reside outsid
     sc:url "https://sites.google.com/site/bestumich/issues" .
 
 <https://bio.tools/gbrowse> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0622 ;
     sc:citation "pubmed:18428797" ;
@@ -210787,8 +212460,14 @@ The observation that disease-associated genetic variants typically reside outsid
     sc:url "http://gmod.org/wiki/GBrowse" ;
     biotools:primaryContact "Alex Read" .
 
+<https://bio.tools/gbrowse_giant_virus> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:description "A genome browser instance dedicated to giant viruses discovered by the IGS Laboratory" ;
+    sc:name "Gbrowse giant virus" ;
+    sc:url "https://www.igs.cnrs-mrs.fr/cgi-bin/gb2/gbrowse" .
+
 <https://bio.tools/gbrs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0203,
@@ -210809,7 +212488,7 @@ GBRS is a suite of tools for reconstructing genomes using RNA-Seq data from mult
     sc:url "https://github.com/churchill-lab/gbrs" .
 
 <https://bio.tools/gbs-sbg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_2830,
@@ -210831,7 +212510,7 @@ GBRS is a suite of tools for reconstructing genomes using RNA-Seq data from mult
     sc:url "https://github.com/swainechen/GBS-SBG" .
 
 <https://bio.tools/gc-profile> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0749,
@@ -210852,7 +212531,7 @@ GBRS is a suite of tools for reconstructing genomes using RNA-Seq data from mult
     biotools:primaryContact "C.T. Zhang" .
 
 <https://bio.tools/gc-sms> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0749,
@@ -210872,7 +212551,7 @@ Gastric cancer (GC) is a heterogeneous tumour with numerous differences of epide
     sc:url "https://njmu-zhanglab.shinyapps.io/gc_sms/" .
 
 <https://bio.tools/gca> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0622,
@@ -210890,7 +212569,7 @@ Genetic connectedness quantifies the extent of linkage between individuals acros
     sc:url "https://github.com/QGresources/GCA" .
 
 <https://bio.tools/gcalignr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0610,
@@ -210909,7 +212588,7 @@ Genetic connectedness quantifies the extent of linkage between individuals acros
     biotools:primaryContact "Meinolf Ottensmann" .
 
 <https://bio.tools/gcanno> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3170,
@@ -210928,7 +212607,7 @@ gCAnno-A tool for cell type annotation of single-cell transcriptome sequencing."
     sc:url "https://github.com/xjtu-omics/gCAnno" .
 
 <https://bio.tools/gcapc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3168,
         edam:topic_3169 ;
@@ -210947,7 +212626,7 @@ gCAnno-A tool for cell type annotation of single-cell transcriptome sequencing."
     biotools:primaryContact "Mingxiang Teng" .
 
 <https://bio.tools/gcat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0157,
         edam:topic_0196 ;
@@ -210965,7 +212644,7 @@ gCAnno-A tool for cell type annotation of single-cell transcriptome sequencing."
     sc:url "https://github.com/informatik-mannheim/genetic-code-analysis-toolkit" .
 
 <https://bio.tools/gcatest> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0625,
@@ -210985,7 +212664,7 @@ gCAnno-A tool for cell type annotation of single-cell transcriptome sequencing."
         "Wei Hao" .
 
 <https://bio.tools/gcatsl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_1775,
@@ -211007,7 +212686,7 @@ GCATSL is a deep learning model that can be used for SL prediction. As shown in
     sc:url "https://zenodo.org/record/4522679" .
 
 <https://bio.tools/gcdiscrimination> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_2640,
@@ -211022,8 +212701,50 @@ Gastric cancer (GC) continues to be one of the major causes of cancer deaths wor
     sc:name "GCdiscrimination" ;
     sc:url "http://lishuyan.lzu.edu.cn/GC/" .
 
+<https://bio.tools/gcen> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0602,
+        edam:topic_0659,
+        edam:topic_0769,
+        edam:topic_3170 ;
+    sc:citation <https://doi.org/10.3390/CIMB44040100>,
+        "pmcid:PMC9164028",
+        "pubmed:35723358" ;
+    sc:description "An Easy-to-Use Toolkit for Gene Co-Expression Network Analysis and lncRNAs Annotation." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_3463,
+        edam:operation_3501,
+        edam:operation_3672,
+        edam:operation_3927 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "GCEN" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://www.biochen.org/gcen/visualization" .
+
+<https://bio.tools/gcfront> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_2229,
+        edam:topic_3172 ;
+    sc:citation <https://doi.org/10.1101/2021.10.12.464108> ;
+    sc:description "A tool for determining a Pareto front of growth-coupled cell factory designs." ;
+    sc:featureList edam:operation_0479 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "gcFront" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/lLegon/gcFront" .
+
 <https://bio.tools/gcgvd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
@@ -211044,8 +212765,25 @@ Grass carp (Ctenopharyngodon idellus) is a herbivorous, freshwater fish species
     sc:name "GCGVD" ;
     sc:url "http://www.ncgr.ac.cn/grasscarp/" .
 
+<https://bio.tools/gcgx> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0108,
+        edam:topic_0203,
+        edam:topic_3382 ;
+    sc:citation <https://doi.org/10.1530/JME-21-0107>,
+        "pmcid:PMC8691098",
+        "pubmed:34787097" ;
+    sc:description "GCgx is a scientific web application that allows scientists to study the response of different cell types to glucocorticoids." ;
+    sc:isAccessibleForFree true ;
+    sc:name "GCgx" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://gcgx.niaid.nih.gov" .
+
 <https://bio.tools/gclust> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btp047> ;
@@ -211059,7 +212797,7 @@ Grass carp (Ctenopharyngodon idellus) is a herbivorous, freshwater fish species
     sc:url "http://gclust.c.u-tokyo.ac.jp/" .
 
 <https://bio.tools/gcluster> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0102,
@@ -211080,26 +212818,26 @@ Gcluster is a simple-to-use tool for visualizing and comparing genome contexts f
 
 <https://bio.tools/gcmap> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0928" ;
-            sc:name "Gene expression profile" ;
-            sc:sameAs "http://edamontology.org/data_0928" ],
+            sc:additionalType "http://edamontology.org/data_0928" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Gene expression profile" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0842" ;
-            sc:name "Identifier" ;
-            sc:sameAs "http://edamontology.org/data_0842" ] ;
+            sc:additionalType "http://edamontology.org/data_0842" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Identifier" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1636" ;
-            sc:name "Heat map" ;
-            sc:sameAs "http://edamontology.org/data_1636" ],
+            sc:additionalType "http://edamontology.org/data_1636" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Heat map" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ],
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Plot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -211122,7 +212860,7 @@ Gcluster is a simple-to-use tool for visualizing and comparing genome contexts f
     biotools:primaryContact "Thomas Sandmann" .
 
 <https://bio.tools/gcmapweb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -211141,16 +212879,38 @@ Gcluster is a simple-to-use tool for visualizing and comparing genome contexts f
     sc:url "http://bioconductor.org/packages/release/bioc/html/gCMAPWeb.html" ;
     biotools:primaryContact "Thomas Sandmann" .
 
+<https://bio.tools/gcmecm> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0199,
+        edam:topic_0602,
+        edam:topic_2640 ;
+    sc:citation <https://doi.org/10.1186/S12859-021-04505-W>,
+        "pmcid:PMC8670134",
+        "pubmed:34906079" ;
+    sc:description "The package constructs the mutually exclusively mutated gene networks from mutation associations and gene interactions with the graph clustering technique and identifies sub-networks with distinct biological functions with the canonical pathways." ;
+    sc:featureList edam:operation_0533,
+        edam:operation_3227,
+        edam:operation_3432,
+        edam:operation_3926 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "gcMECM" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/CBIIT-CGBB/gcMECM" .
+
 <https://bio.tools/gcmodeller> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_3770" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3779" ;
-            sc:name "Annotated text" ;
-            sc:sameAs "http://edamontology.org/data_3779" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3779" ;
+            sc:encodingFormat "http://edamontology.org/format_2585" ;
+            sc:name "Annotated text" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Bioinformatics portal",
         "Command-line tool",
         "Library",
@@ -211177,8 +212937,30 @@ Gcluster is a simple-to-use tool for visualizing and comparing genome contexts f
         "Windows" ;
     sc:url "https://gcmodeller.org/" .
 
+<https://bio.tools/gcncc> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0602,
+        edam:topic_0634,
+        edam:topic_3360,
+        edam:topic_3474,
+        edam:topic_3518 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAB772>,
+        "pubmed:34788368" ;
+    sc:description "Deep graph representations embed network information for robust disease marker identification." ;
+    sc:featureList edam:operation_3094,
+        edam:operation_3432,
+        edam:operation_3463 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "GCNCC" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/omarmaddouri/GCNCC" .
+
 <https://bio.tools/gcncda> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0611,
         edam:topic_0634,
@@ -211199,8 +212981,27 @@ Gcluster is a simple-to-use tool for visualizing and comparing genome contexts f
     sc:name "GCNCDA" ;
     sc:url "https://github.com/wjq0323/GCNCDA" .
 
+<https://bio.tools/gcncmi> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0659,
+        edam:topic_3474,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.3389/FGENE.2022.959701>,
+        "pmcid:PMC9389118",
+        "pubmed:35991563" ;
+    sc:description "CircRNA-miRNA interaction Prediction Based on Graph Neural Network" ;
+    sc:featureList edam:operation_0463,
+        edam:operation_3094,
+        edam:operation_3901 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "GCNCMI" ;
+    sc:url "https://github.com/csuhjhjhj/GCNCMI" .
+
 <https://bio.tools/gcnet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3382 ;
     sc:citation <https://doi.org/10.1109/TPAMI.2020.3047209>,
@@ -211216,7 +213017,7 @@ GCNet is initially described in arxiv. Via absorbing advantages of Non-Local Net
     sc:url "https://github.com/xvjiarui/GCNet" .
 
 <https://bio.tools/gcnmda> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3336,
         edam:topic_3373,
@@ -211237,10 +213038,10 @@ GCNMDA: A novel Graph Convolution Network based framework for predicting Microbe
 
 <https://bio.tools/gcocoa> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0842" ;
-            sc:name "Identifier" ;
-            sc:sameAs "http://edamontology.org/data_0842" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0842" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Identifier" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_1775,
@@ -211267,7 +213068,7 @@ GCNMDA: A novel Graph Convolution Network based framework for predicting Microbe
     biotools:primaryContact "Jaak Vilo" .
 
 <https://bio.tools/gcontrol> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3053,
@@ -211284,14 +213085,14 @@ GCNMDA: A novel Graph Convolution Network based framework for predicting Microbe
 
 <https://bio.tools/gconvert> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0842" ;
-            sc:name "Identifier" ;
-            sc:sameAs "http://edamontology.org/data_0842" ] ;
+            sc:additionalType "http://edamontology.org/data_0842" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Identifier" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0842" ;
-            sc:name "Identifier" ;
-            sc:sameAs "http://edamontology.org/data_0842" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0842" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Identifier" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3345 ;
@@ -211313,7 +213114,7 @@ GCNMDA: A novel Graph Convolution Network based framework for predicting Microbe
     sc:url "http://biit.cs.ut.ee/gprofiler/gconvert.cgi" .
 
 <https://bio.tools/gcore> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0602,
@@ -211327,7 +213128,7 @@ GCNMDA: A novel Graph Convolution Network based framework for predicting Microbe
     sc:url "http://sourceforge.net/projects/gscore/" .
 
 <https://bio.tools/gcprofilemaker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0625,
@@ -211346,7 +213147,7 @@ GCNMDA: A novel Graph Convolution Network based framework for predicting Microbe
     biotools:primaryContact <https://orcid.org/0000-0003-4693-9948> .
 
 <https://bio.tools/gcrisprtools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3343 ;
@@ -211364,7 +213165,7 @@ GCNMDA: A novel Graph Convolution Network based framework for predicting Microbe
     biotools:primaryContact "Russell Bainer" .
 
 <https://bio.tools/gcrma> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0080 ;
@@ -211382,7 +213183,7 @@ GCNMDA: A novel Graph Convolution Network based framework for predicting Microbe
     biotools:primaryContact "Z. Wu" .
 
 <https://bio.tools/gcsa2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTZ575>,
         "pubmed:31406990" ;
@@ -211395,7 +213196,7 @@ GCNMDA: A novel Graph Convolution Network based framework for predicting Microbe
     sc:url "https://github.com/jltsiren/gcsa2" .
 
 <https://bio.tools/gcsenet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_0659,
@@ -211416,7 +213217,7 @@ GCNMDA: A novel Graph Convolution Network based framework for predicting Microbe
     sc:url "https://github.com/Appleabc123/GCSENet" .
 
 <https://bio.tools/gcsnap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0114,
@@ -211435,7 +213236,7 @@ GCNMDA: A novel Graph Convolution Network based framework for predicting Microbe
     biotools:primaryContact "Joana Pereira" .
 
 <https://bio.tools/gcsscore> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0632,
         edam:topic_0749,
@@ -211461,7 +213262,7 @@ For differential expression analysis of 3'IVT and WT-style microarrays from Affy
     sc:url "https://github.com/harrisgm/GCSscore" .
 
 <https://bio.tools/gcta> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3517 ;
     sc:citation <https://doi.org/10.1016/j.ajhg.2010.11.011>,
@@ -211479,7 +213280,7 @@ For differential expression analysis of 3'IVT and WT-style microarrays from Affy
     biotools:primaryContact <http://orcid.org/0000-0003-2001-2474> .
 
 <https://bio.tools/gctype> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0637,
@@ -211500,7 +213301,7 @@ GCM Type Strain Sequencing project.""" ;
     sc:url "http://gctype.wdcm.org/" .
 
 <https://bio.tools/gcua> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0092,
@@ -211525,7 +213326,7 @@ GCM Type Strain Sequencing project.""" ;
     biotools:primaryContact "Thomas Schödl" .
 
 <https://bio.tools/gcup> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654,
@@ -211541,7 +213342,7 @@ GCM Type Strain Sequencing project.""" ;
     sc:url "https://www.uni-due.de/~hy0546/gCUP/" .
 
 <https://bio.tools/gcview> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0622,
@@ -211558,7 +213359,7 @@ GCM Type Strain Sequencing project.""" ;
     sc:url "http://toolkit.tuebingen.mpg.de/gcview" .
 
 <https://bio.tools/gcwgan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0130,
@@ -211578,7 +213379,7 @@ k.""" ;
     sc:url "https://github.com/Shen-Lab/gcWGAN" .
 
 <https://bio.tools/gda> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0202,
         edam:topic_0203,
@@ -211596,8 +213397,30 @@ k.""" ;
     sc:softwareHelp <http://gda.unimore.it/help.php> ;
     sc:url "http://gda.unimore.it" .
 
+<https://bio.tools/gda_decomposition> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workflow" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_0196,
+        edam:topic_0622,
+        edam:topic_3302,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.1186/S12864-022-08616-3>,
+        "pmcid:PMC9131526",
+        "pubmed:35610562" ;
+    sc:description "GDA (Genome Decomposition Analysis) is a bioinformatic pipeline to analyse genome architecture." ;
+    sc:featureList edam:operation_0362,
+        edam:operation_0525,
+        edam:operation_3216 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "GDA" ;
+    sc:operatingSystem "Linux",
+        "Mac" ;
+    sc:url "https://github.com/eeaunin/gda" .
+
 <https://bio.tools/gdap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0622,
@@ -211615,7 +213438,7 @@ k.""" ;
     biotools:primaryContact "Yeates T.O." .
 
 <https://bio.tools/gdasc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_3170 ;
@@ -211629,7 +213452,7 @@ It provides a user-friendly web interface for detecting batch factors. Based on
     sc:url "http://bioinfo.nankai.edu.cn/gdasc.php" .
 
 <https://bio.tools/gdbchembl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0209,
@@ -211650,7 +213473,7 @@ GDBChEMBL is a library of 10 million chemical structures that was extracted from
     sc:url "http://gdb.unibe.ch" .
 
 <https://bio.tools/gdc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3071,
@@ -211665,20 +213488,20 @@ GDBChEMBL is a library of 10 million chemical structures that was extracted from
     sc:url "http://sun.aei.polsl.pl/REFRESH/index.php?page=projects&project=gdc&subpage=about" .
 
 <https://bio.tools/gdc-api> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "The GDC API drives the GDC Data and Submission Portals and provides programmatic access to GDC functionality. This includes searching for, downloading, and submitting data and metadata. The GDC API uses JSON as its communication format, and standard HTTP methods like GET, PUT, POST and DELETE." ;
     sc:name "gdc-api" ;
     sc:url "https://docs.gdc.cancer.gov/API/Users_Guide/Getting_Started/#the-gdc-application-programming-interface-api-an-overview" .
 
 <https://bio.tools/gdc-client> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "The gdc-client provides several convenience functions over the GDC API which provides general download/upload via HTTPS." ;
     sc:name "gdc-client" ;
     sc:softwareVersion "1.6.0" ;
     sc:url "https://github.com/NCI-GDC/gdc-client" .
 
 <https://bio.tools/gdclean> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3360,
         edam:topic_3444,
@@ -211697,7 +213520,7 @@ GDBChEMBL is a library of 10 million chemical structures that was extracted from
     sc:url "https://github.com/JunweiLiu0208/GdClean" .
 
 <https://bio.tools/gdcrnatools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0203,
@@ -211722,7 +213545,7 @@ GDBChEMBL is a library of 10 million chemical structures that was extracted from
     biotools:primaryContact "Ruidong Li" .
 
 <https://bio.tools/gddfold> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0130,
         edam:topic_0196,
         edam:topic_0736 ;
@@ -211737,7 +213560,7 @@ GDBChEMBL is a library of 10 million chemical structures that was extracted from
     biotools:primaryContact "Guijun Zhang" .
 
 <https://bio.tools/gddp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0634,
@@ -211756,7 +213579,7 @@ GDBChEMBL is a library of 10 million chemical structures that was extracted from
     sc:url "https://gddp.research.cchmc.org/" .
 
 <https://bio.tools/gdfuzz3d> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_2275,
@@ -211774,7 +213597,7 @@ GDBChEMBL is a library of 10 million chemical structures that was extracted from
         "Michal J. Pietal" .
 
 <https://bio.tools/gdhc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3071,
         edam:topic_3572 ;
@@ -211789,7 +213612,7 @@ GDBChEMBL is a library of 10 million chemical structures that was extracted from
     sc:url "http://web1.sph.emory.edu/users/tyu8/GDHC/" .
 
 <https://bio.tools/gdm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Web application" ;
     sc:applicationSubCategory edam:topic_2269,
@@ -211803,8 +213626,34 @@ GDBChEMBL is a library of 10 million chemical structures that was extracted from
     sc:name "GDM" ;
     sc:url "https://liuhongwei.shinyapps.io/gdm_risk_calculator/" .
 
+<https://bio.tools/gdoq> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:description "A open source Webserver for prediction of Mycobacterium Tuberculosis (M.Tb) inhibitors using QSAR and Docking strategies. GDoQ web server has been developed to serve scientific community working in the field of Drug Designing for designing inhibitors against N-acetylglucosamine-1-phosphate uridyltransferase (GLMU) protein, a potential drug target involved in bacterial cell wall synthesis." ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "gdoq" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/gdoq/index.html> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/gdoq/index.html" .
+
+<https://bio.tools/gdpbio> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:description "GDPbio is the project focused upon providing various resources related to genome analysis particularly for the prediction of disease susceptibility of a particular individual and personalized medicines development, aiming public health improvement." ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "gdpbio" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/gdpbio/index.html> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/gdpbio/index.html" .
+
 <https://bio.tools/gdportal> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0659,
         edam:topic_2640,
@@ -211825,7 +213674,7 @@ The Next Generation Cancer Knowledge Network.""" ;
     sc:url "https://gdc.cancer.gov/" .
 
 <https://bio.tools/gdr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0199,
@@ -211849,7 +213698,7 @@ The Next Generation Cancer Knowledge Network.""" ;
     biotools:primaryContact "Contact Form" .
 
 <https://bio.tools/gdsarray> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:description "GDS files are widely used to represent genotyping or sequence data. The GDSArray package implements the `GDSArray` class to represent nodes in GDS files in a matrix-like representation that allows easy manipulation (e.g., subsetting, mathematical transformation) in _R_. The data remains on disk until needed, so that very large files can be processed." ;
@@ -211868,7 +213717,7 @@ The Next Generation Cancer Knowledge Network.""" ;
     biotools:primaryContact "Qian Liu" .
 
 <https://bio.tools/gdsctools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0208,
         edam:topic_2640,
@@ -211887,14 +213736,14 @@ The Next Generation Cancer Knowledge Network.""" ;
 
 <https://bio.tools/gdsfmt> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1276" ;
-            sc:name "Nucleic acid features" ;
-            sc:sameAs "http://edamontology.org/data_1276" ] ;
+            sc:additionalType "http://edamontology.org/data_1276" ;
+            sc:encodingFormat "http://edamontology.org/format_2921" ;
+            sc:name "Nucleic acid features" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1276" ;
-            sc:name "Nucleic acid features" ;
-            sc:sameAs "http://edamontology.org/data_1276" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1276" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Nucleic acid features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3071 ;
@@ -211914,7 +213763,7 @@ The Next Generation Cancer Knowledge Network.""" ;
     biotools:primaryContact <http://orcid.org/0000-0002-1390-0708> .
 
 <https://bio.tools/gdt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3053,
@@ -211931,7 +213780,7 @@ The Next Generation Cancer Knowledge Network.""" ;
     biotools:primaryContact "Wei-Min Chen" .
 
 <https://bio.tools/gdtools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:description "Performs various functions on GenomeDiff formatted files." ;
@@ -211940,22 +213789,22 @@ The Next Generation Cancer Knowledge Network.""" ;
 
 <https://bio.tools/gdtools_annotate> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0622,
@@ -211976,14 +213825,14 @@ The Next Generation Cancer Knowledge Network.""" ;
 
 <https://bio.tools/gdtools_apply> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_2533 ;
@@ -212004,18 +213853,18 @@ The Next Generation Cancer Knowledge Network.""" ;
 
 <https://bio.tools/gdtools_check> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_2533 ;
@@ -212035,14 +213884,14 @@ The Next Generation Cancer Knowledge Network.""" ;
 
 <https://bio.tools/gdtools_gd2gvf> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1975" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_2533,
@@ -212063,14 +213912,14 @@ The Next Generation Cancer Knowledge Network.""" ;
 
 <https://bio.tools/gdtools_gd2vcf> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence variations" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_3071 ;
@@ -212090,14 +213939,14 @@ The Next Generation Cancer Knowledge Network.""" ;
 
 <https://bio.tools/gdtools_intersect> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0622,
@@ -212118,18 +213967,18 @@ The Next Generation Cancer Knowledge Network.""" ;
 
 <https://bio.tools/gdtools_mask> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0622,
@@ -212150,14 +213999,14 @@ The Next Generation Cancer Knowledge Network.""" ;
 
 <https://bio.tools/gdtools_mutations> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0622,
@@ -212178,14 +214027,14 @@ The Next Generation Cancer Knowledge Network.""" ;
 
 <https://bio.tools/gdtools_normalize> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0622,
@@ -212205,14 +214054,14 @@ The Next Generation Cancer Knowledge Network.""" ;
 
 <https://bio.tools/gdtools_not-evidence> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0622,
@@ -212234,14 +214083,14 @@ The Next Generation Cancer Knowledge Network.""" ;
 
 <https://bio.tools/gdtools_simulate-mutations> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_2533,
@@ -212261,18 +214110,18 @@ The Next Generation Cancer Knowledge Network.""" ;
 
 <https://bio.tools/gdtools_subtract> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0199,
@@ -212293,14 +214142,14 @@ The Next Generation Cancer Knowledge Network.""" ;
 
 <https://bio.tools/gdtools_union> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0622,
@@ -212322,14 +214171,14 @@ The Next Generation Cancer Knowledge Network.""" ;
 
 <https://bio.tools/gdtools_validate> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0622,
@@ -212349,14 +214198,14 @@ The Next Generation Cancer Knowledge Network.""" ;
 
 <https://bio.tools/gdtools_vcf2gd> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ] ;
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence variations" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0080,
@@ -212375,8 +214224,31 @@ The Next Generation Cancer Knowledge Network.""" ;
     sc:url "http://barricklab.org/twiki/pub/Lab/ToolsBacterialGenomeResequencing/documentation/gd_usage.html" ;
     biotools:primaryContact "Galaxy Support Team" .
 
+<https://bio.tools/ge-impute> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0769,
+        edam:topic_2229,
+        edam:topic_3170,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1093/BIB/BBAC313>,
+        "pubmed:35901457" ;
+    sc:description "GE-Impute is an imputation method for scRNA-seq data based on graph embeddings." ;
+    sc:featureList edam:operation_0244,
+        edam:operation_0314,
+        edam:operation_3463,
+        edam:operation_3557 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-2.0" ;
+    sc:name "GE-Impute" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/wxbCaterpillar/GE-Impute" .
+
 <https://bio.tools/gear> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0769,
@@ -212396,22 +214268,22 @@ The package geaR is designed to aid with evolutionary and population genetic ana
 
 <https://bio.tools/gear-genomics> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ] ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:encodingFormat "http://edamontology.org/format_1632" ;
+            sc:name "Nucleic acid sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ],
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Sequence variations" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1916" ;
-            sc:name "Alignment" ;
-            sc:sameAs "http://edamontology.org/data_1916" ],
+            sc:additionalType "http://edamontology.org/data_1916" ;
+            sc:encodingFormat "http://edamontology.org/format_3464" ;
+            sc:name "Alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1711" ;
-            sc:name "Sequence alignment image" ;
-            sc:sameAs "http://edamontology.org/data_1711" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1711" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Sequence alignment image" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0199 ;
@@ -212437,7 +214309,7 @@ The package geaR is designed to aid with evolutionary and population genetic ana
     sc:url "https://www.gear-genomics.com/" .
 
 <https://bio.tools/geauxdock> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0154,
@@ -212452,31 +214324,8 @@ The package geaR is designed to aid with evolutionary and population genetic ana
         <http://www.institute.loni.org/lasigma/package/install.php> ;
     sc:url "http://www.institute.loni.org/lasigma/package/dock/" .
 
-<https://bio.tools/gebn> a sc:SoftwareApplication ;
-    sc:additionalType "Command-line tool" ;
-    sc:applicationSubCategory edam:topic_0128,
-        edam:topic_0769,
-        edam:topic_3474 ;
-    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTZ718>,
-        "pubmed:31584634" ;
-    sc:description """Methods, Applications, and Evaluations.
-
-Graph Embedding Evaluation / Code and Datasets for "Graph Embedding on Biomedical Networks: Methods, Applications, and Evaluations".
-
-BioNEV (Biomedical Network Embedding Evaluation).
-
-This repository contains source code and datasets for paper "Graph Embedding on Biomedical Networks: Methods, Applications, and Evaluations" (accepted by Bioinformatics). This work aims to systematically evaluate recent advanced graph embedding techniques on biomedical tasks. We compile 5 benchmark datasets for 4 biomedical prediction tasks (see paper for details) and use them to evaluate 11 representative graph embedding methods selected from different categories:.
-
-5 matrix factorization-based: Laplacian Eigenmap, SVD, Graph Factorization, HOPE, GraRep.""" ;
-    sc:featureList edam:operation_0303,
-        edam:operation_2492,
-        edam:operation_3439 ;
-    sc:license "MIT" ;
-    sc:name "GEBN" ;
-    sc:url "https://github.com/xiangyue9607/BioNEV" .
-
 <https://bio.tools/gec> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_2269,
@@ -212494,18 +214343,18 @@ This repository contains source code and datasets for paper "Graph Embedding on
 
 <https://bio.tools/gecko> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3494" ;
-            sc:name "DNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3494" ],
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "DNA sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3494" ;
-            sc:name "DNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3494" ] ;
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "DNA sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1381" ;
-            sc:name "Sequence alignment (pair)" ;
-            sc:sameAs "http://edamontology.org/data_1381" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1381" ;
+            sc:encodingFormat "http://edamontology.org/format_2333" ;
+            sc:name "Sequence alignment (pair)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
@@ -212526,22 +214375,22 @@ This repository contains source code and datasets for paper "Graph Embedding on
 
 <https://bio.tools/gecko-csb> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1381" ;
-            sc:name "Sequence alignment (pair)" ;
-            sc:sameAs "http://edamontology.org/data_1381" ],
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "DNA sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3494" ;
-            sc:name "DNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3494" ],
+            sc:additionalType "http://edamontology.org/data_1381" ;
+            sc:encodingFormat "http://edamontology.org/format_2333" ;
+            sc:name "Sequence alignment (pair)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3494" ;
-            sc:name "DNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3494" ] ;
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "DNA sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1381" ;
-            sc:name "Sequence alignment (pair)" ;
-            sc:sameAs "http://edamontology.org/data_1381" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1381" ;
+            sc:encodingFormat "http://edamontology.org/format_2333" ;
+            sc:name "Sequence alignment (pair)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
@@ -212562,10 +214411,10 @@ This repository contains source code and datasets for paper "Graph Embedding on
 
 <https://bio.tools/gecko-mgv> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Sequence alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0092 ;
     sc:description "Web-based, platform-independent tool to analyse results of pairwise and multiple sequences comparison software. The implemented tool includes the traditional capabilities of this type of software, incorporating the concept of layers from image editing software to represent different comparisons. An innovative feature is the integration of the Evolutionary Events timeline. To extend the functionality, a set of post-processing services has been included." ;
@@ -212583,7 +214432,7 @@ This repository contains source code and datasets for paper "Graph Embedding on
     biotools:primaryContact "Esteban Pérez-Wohlfeil" .
 
 <https://bio.tools/gecko_conservation> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654,
@@ -212600,7 +214449,7 @@ This repository contains source code and datasets for paper "Graph Embedding on
     sc:url "http://bibiserv.techfak.uni-bielefeld.de/gecko/" .
 
 <https://bio.tools/geco> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0203,
@@ -212620,7 +214469,7 @@ Welcome to GECO (Gene Expression Clustering Optimization), the straightforward,
     sc:url "http://www.theGECOapp.com" .
 
 <https://bio.tools/geco3> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:description "GeCo3 is a DNA compressor that uses a neural network to do the mixing of experts." ;
     sc:license "GPL-3.0" ;
@@ -212628,7 +214477,7 @@ Welcome to GECO (Gene Expression Clustering Optimization), the straightforward,
     sc:url "https://github.com/cobilab/geco3/" .
 
 <https://bio.tools/gecont_2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0623,
@@ -212646,8 +214495,34 @@ Welcome to GECO (Gene Expression Clustering Optimization), the straightforward,
     sc:url "http://operons.ibt.unam.mx/gctNG/" ;
     biotools:primaryContact "Gene Context Tool NG Support" .
 
+<https://bio.tools/gecoviz> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:name "Protein sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_0203,
+        edam:topic_3174,
+        edam:topic_3293,
+        edam:topic_3382 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAC367>,
+        "pmcid:PMC9252766",
+        "pubmed:35639770" ;
+    sc:description "Genomic context visualisation of prokaryotic genes from a functional and evolutionary perspective." ;
+    sc:featureList edam:operation_2421,
+        edam:operation_3208,
+        edam:operation_3663 ;
+    sc:isAccessibleForFree true ;
+    sc:name "GeCoViz" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://gecoviz.cgmlab.org/help/> ;
+    sc:url "https://gecoviz.cgmlab.org" .
+
 <https://bio.tools/gecs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0154,
@@ -212665,7 +214540,7 @@ Welcome to GECO (Gene Expression Clustering Optimization), the straightforward,
     sc:url "http://www.genome.jp/tools/gecs" .
 
 <https://bio.tools/gedas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0203,
@@ -212680,7 +214555,7 @@ Welcome to GECO (Gene Expression Clustering Optimization), the straightforward,
     sc:url "http://gedas.bizhat.com/gedas.htm" .
 
 <https://bio.tools/gedevo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602 ;
     sc:citation <https://doi.org/10.4230/OASIcs.GCB.2013.68> ;
@@ -212698,7 +214573,7 @@ Welcome to GECO (Gene Expression Clustering Optimization), the straightforward,
     biotools:primaryContact "Jan Baumbach" .
 
 <https://bio.tools/gedevo-m> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602 ;
     sc:citation <https://doi.org/10.1145/2576768.2598390> ;
@@ -212716,7 +214591,7 @@ Welcome to GECO (Gene Expression Clustering Optimization), the straightforward,
     biotools:primaryContact "Jan Baumbach" .
 
 <https://bio.tools/gedi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0199,
@@ -212738,8 +214613,70 @@ Generalised suffix array-based Direct SNV caller, or GeDi, detects somatic Singl
     sc:name "GeDi" ;
     sc:url "https://github.com/izaak-coleman/GeDi" .
 
+<https://bio.tools/gedi_R> a sc:SoftwareApplication ;
+    bsc:output [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0769,
+        edam:topic_3170,
+        edam:topic_3308,
+        edam:topic_3518 ;
+    sc:citation <https://doi.org/10.1101/2021.11.11.468093> ;
+    sc:description "An R package for integration of transcriptomic data from multiple high-throughput platforms." ;
+    sc:featureList edam:operation_2939,
+        edam:operation_3282,
+        edam:operation_3659,
+        edam:operation_3891 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "GEDI" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/MNStokholm/GEDI" .
+
+<https://bio.tools/gedipnet> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application",
+        "Workflow" ;
+    sc:applicationSubCategory edam:topic_0602 ;
+    sc:citation <https://doi.org/10.1016/j.gendis.2022.05.034> ;
+    sc:description "A database of gene-disease pathway association, along with tools to identify i) disease-disease comorbidity, ii) pathway enrichment, iii) disease enrichment, iv) disease enrichment using GO terms, v) polypharmacological target prediction and vi) Venn of genes, pathways, domains, GO terms, and custom list" ;
+    sc:featureList edam:operation_3501 ;
+    sc:name "GeDiPNet" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://www.youtube.com/watch?v=tN9GuIGE5u0> ;
+    sc:url "http://gedipnet.bicnirrh.res.in/index.php" .
+
+<https://bio.tools/gedpm-cg> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0196,
+        edam:topic_0199,
+        edam:topic_0632,
+        edam:topic_3168,
+        edam:topic_3912 ;
+    sc:citation <https://doi.org/10.3389/FBIOE.2021.768289>,
+        "pmcid:PMC8554027",
+        "pubmed:34722482" ;
+    sc:description "The Genome Editing automated Design platform for point mutation construction in Corynebacterium glutamicum." ;
+    sc:featureList edam:operation_0308,
+        edam:operation_0310,
+        edam:operation_3096 ;
+    sc:isAccessibleForFree true ;
+    sc:name "GEDpm-cg" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://gedpm-cg.biodesign.ac.cn/" .
+
 <https://bio.tools/gee_fu> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0196,
@@ -212755,22 +214692,22 @@ Generalised suffix array-based Direct SNV caller, or GeDi, detects somatic Singl
 
 <https://bio.tools/geecc> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0928" ;
-            sc:name "Gene expression profile" ;
-            sc:sameAs "http://edamontology.org/data_0928" ],
+            sc:additionalType "http://edamontology.org/data_2353" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Ontology data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2353" ;
-            sc:name "Ontology data" ;
-            sc:sameAs "http://edamontology.org/data_2353" ] ;
+            sc:additionalType "http://edamontology.org/data_0928" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Gene expression profile" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1636" ;
-            sc:name "Heat map" ;
-            sc:sameAs "http://edamontology.org/data_1636" ],
+            sc:additionalType "http://edamontology.org/data_1636" ;
+            sc:encodingFormat "http://edamontology.org/format_3604" ;
+            sc:name "Heat map" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3509" ;
-            sc:name "Ontology mapping" ;
-            sc:sameAs "http://edamontology.org/data_3509" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3509" ;
+            sc:encodingFormat "http://edamontology.org/format_3604" ;
+            sc:name "Ontology mapping" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -212790,14 +214727,12 @@ Generalised suffix array-based Direct SNV caller, or GeDi, detects somatic Singl
 
 <https://bio.tools/geecee> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2887" ;
-            sc:name "Nucleic acid sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2887" ] ;
+            sc:additionalType "http://edamontology.org/data_2887" ;
+            sc:name "Nucleic acid sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1276" ;
-            sc:name "Nucleic acid features" ;
-            sc:sameAs "http://edamontology.org/data_1276" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1276" ;
+            sc:name "Nucleic acid features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0157 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -212827,7 +214762,7 @@ Generalised suffix array-based Direct SNV caller, or GeDi, detects somatic Singl
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/geecee.html" .
 
 <https://bio.tools/geefu> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0622 ;
     sc:citation "pubmed:21803806" ;
@@ -212839,8 +214774,29 @@ Generalised suffix array-based Direct SNV caller, or GeDi, detects somatic Singl
     sc:url "https://github.com/danmaclean/gee_fu" ;
     biotools:primaryContact "Dan MacLean" .
 
+<https://bio.tools/geemihc> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0625,
+        edam:topic_3293,
+        edam:topic_3303,
+        edam:topic_3360,
+        edam:topic_3697 ;
+    sc:citation <https://doi.org/10.21203/RS.3.RS-1002100/V1> ;
+    sc:description "Detecting Sparse Microbial Association Signals Adaptively From Longitudinal Microbiome Data Based on Generalized Estimating Equations." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_2238,
+        edam:operation_3432 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "GEEMiHC" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/xpjiang-ccnu/GEEMiHC" .
+
 <https://bio.tools/geenar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -212863,7 +214819,7 @@ Generalised suffix array-based Direct SNV caller, or GeDi, detects somatic Singl
         "Paolo Romano" .
 
 <https://bio.tools/geff> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0121,
@@ -212886,7 +214842,7 @@ Known annotations of the genes of all organisms in the Entrez Gene database to G
     sc:url "http://tiny.cc/geff/" .
 
 <https://bio.tools/geia> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0625,
@@ -212904,7 +214860,7 @@ GEM (Gene-Environment interaction analysis for Millions of samples) is a softwar
     sc:url "https://github.com/large-scale-gxe-methods/GEM" .
 
 <https://bio.tools/geiger> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3293,
@@ -212920,8 +214876,28 @@ GEM (Gene-Environment interaction analysis for Millions of samples) is a softwar
     sc:url "https://cran.r-project.org/web/packages/geiger/" ;
     biotools:primaryContact "Matt Pennell" .
 
+<https://bio.tools/geinfo> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0091,
+        edam:topic_0634,
+        edam:topic_3068 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC301>,
+        "pubmed:35485739" ;
+    sc:description "An R package for gene-environment interaction analysis incorporating prior information." ;
+    sc:featureList edam:operation_0306,
+        edam:operation_3659 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-2.0" ;
+    sc:name "GEInfo" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://cran.r-project.org/web/packages/GEInfo/GEInfo.pdf> ;
+    sc:url "https://CRAN.R-project.org/package=GEInfo" .
+
 <https://bio.tools/geinter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0634,
@@ -212938,7 +214914,7 @@ GEM (Gene-Environment interaction analysis for Millions of samples) is a softwar
     biotools:primaryContact <https://orcid.org/0000-0001-9001-4999> .
 
 <https://bio.tools/geist> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654,
@@ -212954,7 +214930,7 @@ GEM (Gene-Environment interaction analysis for Millions of samples) is a softwar
     sc:url "http://research.nhgri.nih.gov/software/GeIST/" .
 
 <https://bio.tools/gel_analyzer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3068 ;
     sc:description "A free 1D gel electrophoresis image analysis software .The process of gel image analysis is straightforward and covers all the main aspects of evaluation from automatic lane detection to precise molecular weight calculations. Many tools help you to improve the accuracy of gel evaluation. You may obtain the gel image with a common digital camera, or even with your cell phone, and use it to get the results in just a few seconds." ;
@@ -212969,7 +214945,7 @@ GEM (Gene-Environment interaction analysis for Millions of samples) is a softwar
     sc:url "http://www.gelanalyzer.com/" .
 
 <https://bio.tools/gelbank> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0621,
@@ -212991,7 +214967,7 @@ GEM (Gene-Environment interaction analysis for Millions of samples) is a softwar
     biotools:primaryContact "György Babnigg" .
 
 <https://bio.tools/gell> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3071,
@@ -213008,7 +214984,7 @@ GEM (Gene-Environment interaction analysis for Millions of samples) is a softwar
     sc:url "http://phylo.bio.ku.edu/GeLL/" .
 
 <https://bio.tools/gelquest> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3168,
@@ -213022,7 +214998,7 @@ GEM (Gene-Environment interaction analysis for Millions of samples) is a softwar
     sc:url "http://www.sequentix.de/gelquest/index.php" .
 
 <https://bio.tools/gelscape_and_gelbank> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0602,
@@ -213040,7 +215016,7 @@ GEM (Gene-Environment interaction analysis for Millions of samples) is a softwar
     biotools:primaryContact "Nelson Young" .
 
 <https://bio.tools/gelymac> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654 ;
     sc:description "Developed at Reed College which calculates DNA fragment sizes from gel electrophoresis migration data. It runs on a Macintosh computer only. The first step in using the this program is to enter data for a known marker. Both the distances traveled and the fragment sizes are entered. Then the distances migrated by up to 19 sets of DNA fragments are entered, and the program calculates the sizes of these fragments using a cubic-spline interpolation." ;
@@ -213050,7 +215026,7 @@ GEM (Gene-Environment interaction analysis for Millions of samples) is a softwar
     sc:url "http://academic.reed.edu/biology/software.html" .
 
 <https://bio.tools/gem> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0622,
@@ -213078,7 +215054,7 @@ GEM (Gene-Environment interaction analysis for Millions of samples) is a softwar
         "Hong Pan" .
 
 <https://bio.tools/gem-trend> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2259,
@@ -213096,14 +215072,14 @@ GEM (Gene-Environment interaction analysis for Millions of samples) is a softwar
 
 <https://bio.tools/gem3> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1193" ;
-            sc:name "Tool name (FASTA)" ;
-            sc:sameAs "http://edamontology.org/data_1193" ] ;
+            sc:additionalType "http://edamontology.org/data_1193" ;
+            sc:encodingFormat "http://edamontology.org/format_2182" ;
+            sc:name "Tool name (FASTA)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3671" ;
-            sc:name "Text" ;
-            sc:sameAs "http://edamontology.org/data_3671" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3671" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
+            sc:name "Text" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102 ;
     sc:author "Alejandro Chacon",
@@ -213131,8 +215107,31 @@ GEM (Gene-Environment interaction analysis for Millions of samples) is a softwar
     sc:url "https://github.com/smarco/gem3-mapper" ;
     biotools:primaryContact "Santiago Marco-Sola" .
 
+<https://bio.tools/gem_analysis> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0625,
+        edam:topic_0769,
+        edam:topic_3315,
+        edam:topic_3337,
+        edam:topic_3517 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAB223>,
+        "pmcid:PMC8545347",
+        "pubmed:34695175" ;
+    sc:description "Scalable and flexible gene-environment interaction analysis in millions of samples." ;
+    sc:featureList edam:operation_3196,
+        edam:operation_3557,
+        edam:operation_3659 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "GEM" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/large-scale-gxe-methods/GEM" .
+
 <https://bio.tools/gem_library> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3168 ;
@@ -213149,7 +215148,7 @@ GEM (Gene-Environment interaction analysis for Millions of samples) is a softwar
         "Report a bug" .
 
 <https://bio.tools/gemb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:description "This method introduces gene set enrichment for mathematical biology (GEMB).  Typically, gene-set analyses measure the association between a disease of interest and a set of genes related to a biological pathway. These analyses often incorporate gene network properties to account for differential contributions of each gene. With GEMB, we extend this concept further, defining gene contributions based on biophysical properties, by leveraging mathematical models of biology to predict the effects of genetic perturbations on a particular downstream function." ;
     sc:license "GPL-3.0" ;
@@ -213157,7 +215156,7 @@ GEM (Gene-Environment interaction analysis for Millions of samples) is a softwar
     sc:url "https://github.com/cochran4/GEMB" .
 
 <https://bio.tools/gemdecan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0654,
@@ -213176,22 +215175,22 @@ GEM (Gene-Environment interaction analysis for Millions of samples) is a softwar
 
 <https://bio.tools/gemerr> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:citation <https://doi.org/10.1093/nar/gkw343>,
@@ -213208,8 +215207,32 @@ GEM (Gene-Environment interaction analysis for Millions of samples) is a softwar
     sc:url "https://sourceforge.net/projects/gemsim/" ;
     biotools:primaryContact "Galaxy Support Team" .
 
+<https://bio.tools/gemi> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0218,
+        edam:topic_3277,
+        edam:topic_3474,
+        edam:topic_3520 ;
+    sc:citation <https://doi.org/10.1093/DATABASE/BAAC036>,
+        "pmcid:PMC9216561",
+        "pubmed:35657113" ;
+    sc:description "Interactive interface for transformer-based Genomic Metadata Integration." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_2421,
+        edam:operation_2422 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "GeMI" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://gmql.eu/gemi/" .
+
 <https://bio.tools/gemina> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0634,
@@ -213225,7 +215248,7 @@ GEM (Gene-Environment interaction analysis for Millions of samples) is a softwar
     biotools:primaryContact "L. M. Schriml" .
 
 <https://bio.tools/gemini> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1371/journal.pcbi.1003153> ;
@@ -213239,7 +215262,7 @@ GEM (Gene-Environment interaction analysis for Millions of samples) is a softwar
     sc:url "http://gemini.readthedocs.io/en/latest/index.html" .
 
 <https://bio.tools/gemma> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0622,
@@ -213256,7 +215279,7 @@ GEM (Gene-Environment interaction analysis for Millions of samples) is a softwar
     biotools:primaryContact "Support" .
 
 <https://bio.tools/gemma_algorithm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2269,
@@ -213271,16 +215294,41 @@ GEM (Gene-Environment interaction analysis for Millions of samples) is a softwar
     sc:softwareHelp <http://www.xzlab.org/software/GEMMAmanual.pdf> ;
     sc:url "http://www.xzlab.org/software.html" .
 
+<https://bio.tools/gemmaker> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workflow" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0769,
+        edam:topic_3170,
+        edam:topic_3316,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.1186/S12859-022-04629-7>,
+        "pmcid:PMC9063052",
+        "pubmed:35501696" ;
+    sc:description "GEMmaker is a Nextflow workflow for large-scale gene expression sample processing, expression-level quantification and Gene Expression Matrix (GEM) construction." ;
+    sc:featureList edam:operation_3223,
+        edam:operation_3463,
+        edam:operation_3800 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "GEMmaker" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://gemmaker.readthedocs.io/en/latest/>,
+        <https://github.com/SystemsGenetics/GEMmaker/blob/master/CODE_OF_CONDUCT.md> ;
+    sc:url "https://github.com/SystemsGenetics/GEMmaker" .
+
 <https://bio.tools/gemmapper> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_2182" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1916" ;
-            sc:name "Alignment" ;
-            sc:sameAs "http://edamontology.org/data_1916" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1916" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
+            sc:name "Alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0077 ;
     sc:author "Paolo Ribeca" ;
@@ -213298,8 +215346,32 @@ GEM (Gene-Environment interaction analysis for Millions of samples) is a softwar
     sc:url "https://sourceforge.net/projects/gemlibrary/" ;
     biotools:primaryContact "Paolo Ribeca" .
 
+<https://bio.tools/gemo> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0625,
+        edam:topic_0654,
+        edam:topic_0780,
+        edam:topic_3500,
+        edam:topic_3810 ;
+    sc:citation <https://doi.org/10.1093/DATABASE/BAAC057>,
+        "pmcid:PMC9290862",
+        "pubmed:35849014" ;
+    sc:description "A web-based platform for the visualization and curation of genome ancestry mosaics." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3196,
+        edam:operation_3227 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "GeMo" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://gemo.readthedocs.io> ;
+    sc:url "https://gemo.southgreen.fr/" .
+
 <https://bio.tools/gemoma> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_2275 ;
@@ -213317,7 +215389,7 @@ GEM (Gene-Environment interaction analysis for Millions of samples) is a softwar
     biotools:primaryContact "Jens Keilwagen" .
 
 <https://bio.tools/gemprospector> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0632,
@@ -213338,42 +215410,42 @@ GEM (Gene-Environment interaction analysis for Millions of samples) is a softwar
 
 <https://bio.tools/gemreads> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:citation <https://doi.org/10.1093/nar/gkw343>,
@@ -213390,7 +215462,7 @@ GEM (Gene-Environment interaction analysis for Millions of samples) is a softwar
     biotools:primaryContact "Galaxy Support Team" .
 
 <https://bio.tools/gems> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0218,
@@ -213411,7 +215483,7 @@ GEM (Gene-Environment interaction analysis for Millions of samples) is a softwar
     biotools:primaryContact "Chang-Jiun Wu" .
 
 <https://bio.tools/gems_disease> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_2269,
@@ -213431,7 +215503,7 @@ GEM (Gene-Environment interaction analysis for Millions of samples) is a softwar
     biotools:primaryContact <http://orcid.org/0000-0001-9489-1657> .
 
 <https://bio.tools/gemse> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0203,
@@ -213452,7 +215524,7 @@ GEM (Gene-Environment interaction analysis for Millions of samples) is a softwar
     biotools:primaryContact "Vahid Jalili" .
 
 <https://bio.tools/gemstone> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
@@ -213470,14 +215542,14 @@ GEM (Gene-Environment interaction analysis for Millions of samples) is a softwar
 
 <https://bio.tools/gemtools> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ] ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:encodingFormat "http://edamontology.org/format_2182" ;
+            sc:name "Nucleic acid sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1916" ;
-            sc:name "Alignment" ;
-            sc:sameAs "http://edamontology.org/data_1916" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1916" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
+            sc:name "Alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:author "Santiago Marco-Sola",
@@ -213499,7 +215571,7 @@ GEM (Gene-Environment interaction analysis for Millions of samples) is a softwar
     biotools:primaryContact "Emilio Palumbo" .
 
 <https://bio.tools/gemtools_ancestry> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2885,
         edam:topic_3053,
@@ -213517,8 +215589,32 @@ GEM (Gene-Environment interaction analysis for Millions of samples) is a softwar
     sc:url "http://www.compgen.pitt.edu/GemTools/GEM%20Documentation.pdf" ;
     biotools:primaryContact "Bert Klei" .
 
+<https://bio.tools/gen> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0780,
+        edam:topic_2229,
+        edam:topic_3170,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAB878>,
+        "pmcid:PMC8728231",
+        "pubmed:34591957" ;
+    sc:description "A comprehensive data portal integrating transcriptomic profiles across multiple species at both bulk and single-cell levels." ;
+    sc:featureList edam:operation_0264,
+        edam:operation_0314,
+        edam:operation_0315,
+        edam:operation_3766,
+        edam:operation_3933 ;
+    sc:isAccessibleForFree true ;
+    sc:name "GEN" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://ngdc.cncb.ac.cn/gen/" .
+
 <https://bio.tools/gen2vcf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2885,
@@ -213536,7 +215632,7 @@ BACKGROUND:For a genome-wide association study in humans, genotype imputation is
     sc:url "https://bitbucket.org/4shin/division-of-genome-research/src/master/" .
 
 <https://bio.tools/gen3d> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0654,
@@ -213553,7 +215649,7 @@ BACKGROUND:For a genome-wide association study in humans, genotype imputation is
     sc:url "http://sourceforge.net/projects/gen3d/" .
 
 <https://bio.tools/gen3sis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_3050,
@@ -213569,7 +215665,7 @@ BACKGROUND:For a genome-wide association study in humans, genotype imputation is
     sc:url "https://CRAN.R-project.org/package=gen3sis" .
 
 <https://bio.tools/gen3va> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3053,
@@ -213592,7 +215688,7 @@ BACKGROUND:For a genome-wide association study in humans, genotype imputation is
         "Gregory Gundersen" .
 
 <https://bio.tools/genBaRcode> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3053,
         edam:topic_3168,
@@ -213613,7 +215709,7 @@ Provides the necessary functions to identify and extract a selection of already
     sc:url "https://cran.r-project.org/package=genBaRcode" .
 
 <https://bio.tools/genabel> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Suite" ;
     sc:applicationSubCategory edam:topic_3517 ;
@@ -213630,7 +215726,7 @@ Provides the necessary functions to identify and extract a selection of already
     biotools:primaryContact "GenABEL project developers" .
 
 <https://bio.tools/genalice_map> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0622 ;
     sc:description "Ultra-fast Next-Generation Sequencing (NGS) read alignment and variant calling solution." ;
@@ -213642,7 +215738,7 @@ Provides the necessary functions to identify and extract a selection of already
     biotools:primaryContact "GENALICE BV" .
 
 <https://bio.tools/genarise> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3518 ;
@@ -213660,14 +215756,13 @@ Provides the necessary functions to identify and extract a selection of already
 
 <https://bio.tools/genatlas> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1026" ;
-            sc:name "Gene symbol" ;
-            sc:sameAs "http://edamontology.org/data_1026" ] ;
+            sc:additionalType "http://edamontology.org/data_1026" ;
+            sc:name "Gene symbol" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0916" ;
-            sc:name "Gene report" ;
-            sc:sameAs "http://edamontology.org/data_0916" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0916" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Gene report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_2815 ;
@@ -213683,7 +215778,7 @@ Provides the necessary functions to identify and extract a selection of already
     sc:url "http://www.dsi.univ-paris5.fr/genatlas/" .
 
 <https://bio.tools/genatlasdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
@@ -213712,7 +215807,7 @@ Provides the necessary functions to identify and extract a selection of already
         "Martine Lemerrer" .
 
 <https://bio.tools/genavos> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -213732,14 +215827,13 @@ Gene Regulatory Network Analysis by Variable Fractional Order Systems.""" ;
 
 <https://bio.tools/genbank> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1097" ;
-            sc:name "Sequence accession (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1097" ] ;
+            sc:additionalType "http://edamontology.org/data_1097" ;
+            sc:name "Sequence accession (nucleic acid)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:encodingFormat "http://edamontology.org/format_2532" ;
+            sc:name "Sequence record" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1093/nar/gks1195> ;
@@ -213754,30 +215848,30 @@ Gene Regulatory Network Analysis by Variable Fractional Order Systems.""" ;
 
 <https://bio.tools/genbank2gff3> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2549" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1975" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -213799,30 +215893,30 @@ Gene Regulatory Network Analysis by Variable Fractional Order Systems.""" ;
 
 <https://bio.tools/genbank_convertor> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -213838,14 +215932,14 @@ Gene Regulatory Network Analysis by Variable Fractional Order Systems.""" ;
 
 <https://bio.tools/genbank_to_gene> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3071,
         edam:topic_3168 ;
@@ -213862,7 +215956,7 @@ Gene Regulatory Network Analysis by Variable Fractional Order Systems.""" ;
     biotools:primaryContact "Galaxy Support Team" .
 
 <https://bio.tools/genbankr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3071 ;
@@ -213880,7 +215974,7 @@ Gene Regulatory Network Analysis by Variable Fractional Order Systems.""" ;
     biotools:primaryContact "Gabriel Becker" .
 
 <https://bio.tools/genbmap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3053 ;
@@ -213894,7 +215988,7 @@ Gene Regulatory Network Analysis by Variable Fractional Order Systems.""" ;
     sc:url "http://membres-timc.imag.fr/Olivier.Francois/software.html" .
 
 <https://bio.tools/genclip> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2259,
@@ -213906,11 +216000,12 @@ Gene Regulatory Network Analysis by Variable Fractional Order Systems.""" ;
     sc:operatingSystem "Linux",
         "Mac",
         "Windows" ;
-    sc:softwareHelp <http://ci.smu.edu.cn/GenCLiP2/GenCLiP2_Tutorial.html> ;
-    sc:url "http://ci.smu.edu.cn" .
+    sc:softwareHelp <http://cismu.net/GenCLiP2/GenCLiP2_Tutorial.html> ;
+    sc:softwareVersion "GenCLiP 2.0, GenCLiP 3" ;
+    sc:url "http://cismu.net" .
 
 <https://bio.tools/genclust> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0654,
@@ -213926,7 +216021,7 @@ Gene Regulatory Network Analysis by Variable Fractional Order Systems.""" ;
     sc:url "http://www.math.unipa.it/~lobosco/genclust/" .
 
 <https://bio.tools/gencompress> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3071 ;
@@ -213940,7 +216035,7 @@ Gene Regulatory Network Analysis by Variable Fractional Order Systems.""" ;
     sc:url "http://www1.spms.ntu.edu.sg/~chenxin/GenCompress/" .
 
 <https://bio.tools/gencore> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0199,
@@ -213964,18 +216059,18 @@ gencore is a tool for fast and powerful deduplication for paired-end next-genera
 
 <https://bio.tools/gendb> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2887" ;
-            sc:name "Nucleic acid sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2887" ],
+            sc:additionalType "http://edamontology.org/data_2887" ;
+            sc:encodingFormat "http://edamontology.org/format_1936" ;
+            sc:name "Nucleic acid sequence record" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3497" ;
-            sc:name "DNA sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_3497" ] ;
+            sc:additionalType "http://edamontology.org/data_3497" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "DNA sequence (raw)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2887" ;
-            sc:name "Nucleic acid sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2887" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2887" ;
+            sc:encodingFormat "http://edamontology.org/format_1936" ;
+            sc:name "Nucleic acid sequence record" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0085 ;
     sc:citation <https://doi.org/10.1093/nar/gkg312>,
@@ -213996,14 +216091,14 @@ gencore is a tool for fast and powerful deduplication for paired-end next-genera
 
 <https://bio.tools/gendbe> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3497" ;
-            sc:name "DNA sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_3497" ] ;
+            sc:additionalType "http://edamontology.org/data_3497" ;
+            sc:encodingFormat "http://edamontology.org/format_1939" ;
+            sc:name "DNA sequence (raw)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2887" ;
-            sc:name "Nucleic acid sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2887" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2887" ;
+            sc:encodingFormat "http://edamontology.org/format_1936" ;
+            sc:name "Nucleic acid sequence record" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0085 ;
     sc:citation <https://doi.org/10.1371/journal.pone.0085568>,
@@ -214024,7 +216119,7 @@ gencore is a tool for fast and powerful deduplication for paired-end next-genera
     sc:url "https://gendbe.computational.bio.uni-giessen.de" .
 
 <https://bio.tools/gendecoder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0157,
@@ -214039,7 +216134,7 @@ gencore is a tool for fast and powerful deduplication for paired-end next-genera
     sc:url "http://darwin.uvigo.es/software/gendecoder.html" .
 
 <https://bio.tools/gendoo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0114,
         edam:topic_0602,
@@ -214058,7 +216153,7 @@ gencore is a tool for fast and powerful deduplication for paired-end next-genera
     biotools:primaryContact "Takeru Nakazato" .
 
 <https://bio.tools/gene> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0804,
@@ -214078,8 +216173,28 @@ Primary immunodeficiencies (PIDs) are a heterogeneous group of inherited disorde
     sc:name "Gene" ;
     sc:url "http://pid.gxbsidra.org/dm3/geneBrowser/list" .
 
+<https://bio.tools/gene-bench> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_3474,
+        edam:topic_3518 ;
+    sc:citation <https://doi.org/10.1016/J.CMPB.2021.106418>,
+        "pubmed:34555591" ;
+    sc:description "Gene Bench is a benchmark-ing framework used in analyzing methods that detect differentially expressed genes from biological samples. Besides being a benchmarking framework it also contains some commonly used Differential genes detection algorithms:" ;
+    sc:featureList edam:operation_0571,
+        edam:operation_2454,
+        edam:operation_3223 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "Gene-Bench" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/raduangelescu/GeneBench/" .
+
 <https://bio.tools/gene-clic> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0204 ;
     sc:citation <https://doi.org/10.1371/journal.pcbi.1005653> ;
@@ -214096,7 +216211,7 @@ Primary immunodeficiencies (PIDs) are a heterogeneous group of inherited disorde
         "Vamsi K. Mootha" .
 
 <https://bio.tools/gene-counter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3168,
@@ -214112,7 +216227,7 @@ Primary immunodeficiencies (PIDs) are a heterogeneous group of inherited disorde
     biotools:primaryContact "Jeff H. Chang" .
 
 <https://bio.tools/gene-expression-colormap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0203,
@@ -214130,7 +216245,7 @@ Primary immunodeficiencies (PIDs) are a heterogeneous group of inherited disorde
     biotools:primaryContact "Michael Driscoll" .
 
 <https://bio.tools/gene-prober> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0621,
@@ -214144,8 +216259,34 @@ probe designer for geneFISH and phageFISH.""" ;
     sc:name "Gene-PROBER" ;
     sc:url "http://gene-prober.icbm.de/" .
 
+<https://bio.tools/gene-scout> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2299" ;
+            sc:name "Gene name" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0622,
+        edam:topic_0625,
+        edam:topic_3172,
+        edam:topic_3337,
+        edam:topic_3676 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAC274>,
+        "pmcid:PMC9071452",
+        "pubmed:35474393" ;
+    sc:description "Identifying genes with similar continuous trait fingerprints from phenome-wide association analyses." ;
+    sc:featureList edam:operation_2436,
+        edam:operation_3196,
+        edam:operation_3432,
+        edam:operation_3791 ;
+    sc:isAccessibleForFree true ;
+    sc:name "Gene-SCOUT" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://genescout.public.cgr.astrazeneca.com" .
+
 <https://bio.tools/gene2drug> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
@@ -214164,7 +216305,7 @@ probe designer for geneFISH and phageFISH.""" ;
     biotools:primaryContact "Contact list" .
 
 <https://bio.tools/gene2oligo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0196,
@@ -214185,7 +216326,7 @@ probe designer for geneFISH and phageFISH.""" ;
     biotools:primaryContact "Jean-Marie Rouillard" .
 
 <https://bio.tools/gene3d> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -214205,30 +216346,27 @@ probe designer for geneFISH and phageFISH.""" ;
 
 <https://bio.tools/gene3d_structural> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2701" ;
-            sc:name "CATH node ID (family)" ;
-            sc:sameAs "http://edamontology.org/data_2701" ],
+            sc:additionalType "http://edamontology.org/data_2701" ;
+            sc:name "CATH node ID (family)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2701" ;
-            sc:name "CATH node ID (family)" ;
-            sc:sameAs "http://edamontology.org/data_2701" ],
+            sc:additionalType "http://edamontology.org/data_1040" ;
+            sc:name "CATH domain ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1040" ;
-            sc:name "CATH domain ID" ;
-            sc:sameAs "http://edamontology.org/data_1040" ] ;
+            sc:additionalType "http://edamontology.org/data_2701" ;
+            sc:name "CATH node ID (family)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0907" ;
-            sc:name "Protein family report" ;
-            sc:sameAs "http://edamontology.org/data_0907" ],
+            sc:additionalType "http://edamontology.org/data_0907" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Protein family report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0907" ;
-            sc:name "Protein family report" ;
-            sc:sameAs "http://edamontology.org/data_0907" ],
+            sc:additionalType "http://edamontology.org/data_0907" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Protein family report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0907" ;
-            sc:name "Protein family report" ;
-            sc:sameAs "http://edamontology.org/data_0907" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0907" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Protein family report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0623 ;
@@ -214243,8 +216381,32 @@ probe designer for geneFISH and phageFISH.""" ;
     sc:softwareHelp <http://gene3d.biochem.ucl.ac.uk/about> ;
     sc:url "http://gene3d.biochem.ucl.ac.uk/Gene3D/" .
 
+<https://bio.tools/gene4hl> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0199,
+        edam:topic_0203,
+        edam:topic_0625,
+        edam:topic_3168,
+        edam:topic_3912 ;
+    sc:citation <https://doi.org/10.3389/FGENE.2021.773009>,
+        "pmcid:PMC8558372",
+        "pubmed:34733322" ;
+    sc:description "An Integrated Genetic Database for Hearing Loss." ;
+    sc:featureList edam:operation_3196,
+        edam:operation_3225,
+        edam:operation_3226,
+        edam:operation_3463,
+        edam:operation_3766 ;
+    sc:isAccessibleForFree true ;
+    sc:name "Gene4HL" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://www.genemed.tech/gene4hl/" .
+
 <https://bio.tools/gene4pd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -214264,7 +216426,7 @@ Rare variants identified from PD patients.""" ;
     sc:url "http://genemed.tech/gene4pd" .
 
 <https://bio.tools/geneHummus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0623,
         edam:topic_0780,
@@ -214287,32 +216449,8 @@ Rare variants identified from PD patients.""" ;
     sc:url "https://cran.r-project.org/package=geneHummus" ;
     biotools:primaryContact "Jose V. Die" .
 
-<https://bio.tools/geneMANIA_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0091,
-        edam:topic_0130,
-        edam:topic_0203,
-        edam:topic_0621,
-        edam:topic_2885 ;
-    sc:citation <https://doi.org/10.1101/2019.12.18.880963> ;
-    sc:description """Identification of Six novel missense single nucleotide polymorphisms in MAOA gene predisposing to aggressive behavior. Bioinformatics study.
-
-Cytoscape app : Help : Contact : Cite : © UToronto.
-
-GeneMANIA helps you predict the function of your favourite genes and gene sets.
-
-||| NAME (geneMANIA) SIMILAR TO (PUB. DIFFERENT) bio.tools/genemania (GeneMANIA).
-
-||| COMMON LINK WITH (PUB. & NAME DIFFERENT) bio.tools/genemania (GENEMANIA.ORG), bio.tools/genemania_plugin (GENEMANIA.ORG).
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'pmut', 'provean', 'MAOA', 'VEP'""" ;
-    sc:featureList edam:operation_0331,
-        edam:operation_2454,
-        edam:operation_3196 ;
-    sc:name "geneMANIA_autogenerated" ;
-    sc:url "http://www.genemania.org/" .
-
 <https://bio.tools/gene_array_analyzer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0634,
@@ -214334,7 +216472,7 @@ GeneMANIA helps you predict the function of your favourite genes and gene sets.
     biotools:primaryContact "Gene Array Analyzer Support" .
 
 <https://bio.tools/gene_expression> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0203,
@@ -214351,7 +216489,7 @@ GeneMANIA helps you predict the function of your favourite genes and gene sets.
     sc:url "http://phet.colorado.edu/en/simulation/gene-expression-basics" .
 
 <https://bio.tools/gene_expression_atlas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0621,
@@ -214371,7 +216509,7 @@ GeneMANIA helps you predict the function of your favourite genes and gene sets.
     biotools:primaryContact "Contact Form" .
 
 <https://bio.tools/gene_expression_barcode> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0634,
@@ -214393,8 +216531,35 @@ GeneMANIA helps you predict the function of your favourite genes and gene sets.
     sc:url "http://barcode.luhs.org/" ;
     biotools:primaryContact "Rafael A. Irizarry" .
 
+<https://bio.tools/gene_expression_plots> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:name "Expression data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0625,
+        edam:topic_0780,
+        edam:topic_3170,
+        edam:topic_3172 ;
+    sc:citation <https://doi.org/10.20944/PREPRINTS202201.0353.V1> ;
+    sc:description "Visualize and compare gene expression from standard transcriptome (RNA-Seq) data, cluster samples and genes, and infer enrichment of gene function in gene-sets." ;
+    sc:featureList edam:operation_0571,
+        edam:operation_2939,
+        edam:operation_3501,
+        edam:operation_3891,
+        edam:operation_3960 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "Gene Expression Plots" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://usadellab.gitbook.io/geneexpressionplots/> ;
+    sc:url "https://usadellab.github.io/GeneExpressionPlots/#/data" .
+
 <https://bio.tools/gene_graphics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0622,
@@ -214413,7 +216578,7 @@ GeneMANIA helps you predict the function of your favourite genes and gene sets.
         "Rémi Zallot" .
 
 <https://bio.tools/gene_machine> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0654,
@@ -214429,7 +216594,7 @@ GeneMANIA helps you predict the function of your favourite genes and gene sets.
     sc:url "http://phet.colorado.edu/en/simulation/gene-machine-lac-operon" .
 
 <https://bio.tools/gene_ontology> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0602,
@@ -214454,7 +216619,7 @@ The Gene Ontology (GO) project is a major bioinformatics initiative to develop a
     sc:url "http://geneontology.org" .
 
 <https://bio.tools/gene_ontology_browser> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0102,
@@ -214471,7 +216636,7 @@ The Gene Ontology (GO) project is a major bioinformatics initiative to develop a
     sc:url "http://bioinformatics.mdanderson.org/main/MicroarrayGOBrowser:Overview" .
 
 <https://bio.tools/gene_set_builder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_2815,
@@ -214492,22 +216657,18 @@ The Gene Ontology (GO) project is a major bioinformatics initiative to develop a
 
 <https://bio.tools/gene_set_to_diseases> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1025" ;
-            sc:name "Gene identifier" ;
-            sc:sameAs "http://edamontology.org/data_1025" ],
+            sc:additionalType "http://edamontology.org/data_1025" ;
+            sc:name "Gene identifier" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1150" ;
-            sc:name "Disease ID" ;
-            sc:sameAs "http://edamontology.org/data_1150" ] ;
+            sc:additionalType "http://edamontology.org/data_1150" ;
+            sc:name "Disease ID" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0916" ;
-            sc:name "Gene report" ;
-            sc:sameAs "http://edamontology.org/data_0916" ],
+            sc:additionalType "http://edamontology.org/data_0916" ;
+            sc:name "Gene report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1622" ;
-            sc:name "Disease report" ;
-            sc:sameAs "http://edamontology.org/data_1622" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1622" ;
+            sc:name "Disease report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API",
         "Web application" ;
     sc:applicationSubCategory edam:topic_3473 ;
@@ -214524,14 +216685,13 @@ The Gene Ontology (GO) project is a major bioinformatics initiative to develop a
 
 <https://bio.tools/gene_stacker> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1081" ;
-            sc:name "Genotype and phenotype annotation ID" ;
-            sc:sameAs "http://edamontology.org/data_1081" ] ;
+            sc:additionalType "http://edamontology.org/data_1081" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Genotype and phenotype annotation ID" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:name "Image" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0625 ;
@@ -214548,13 +216708,41 @@ The Gene Ontology (GO) project is a major bioinformatics initiative to develop a
     sc:url "http://genestacker.ugent.be/" .
 
 <https://bio.tools/gene_structure> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "rose gras genes structure" ;
     sc:name "gene structure" ;
     sc:url "http://bio.tools/tool/signalp" .
 
+<https://bio.tools/gene_updater> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_3112" ;
+            sc:encodingFormat "http://edamontology.org/format_3620" ;
+            sc:name "Gene expression matrix" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0089,
+        edam:topic_0203,
+        edam:topic_0602,
+        edam:topic_2229,
+        edam:topic_3518 ;
+    sc:citation <https://doi.org/10.1038/S41598-022-17104-3>,
+        "pmcid:PMC9325790",
+        "pubmed:35882976" ;
+    sc:description "A web tool that autocorrects and updates for Excel misidentified gene names." ;
+    sc:featureList edam:operation_0224,
+        edam:operation_0310,
+        edam:operation_3928 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "Gene Updater" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://kuanrongchan-date-to-gene-converter-date-gene-tool-oodr7h.streamlitapp.com" .
+
 <https://bio.tools/geneanswers> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3053 ;
@@ -214574,7 +216762,7 @@ The Gene Ontology (GO) project is a major bioinformatics initiative to develop a
         "Lei Huang" .
 
 <https://bio.tools/genease> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0634,
@@ -214591,7 +216779,7 @@ The Gene Ontology (GO) project is a major bioinformatics initiative to develop a
     biotools:primaryContact "Tesfaye B Mersha" .
 
 <https://bio.tools/geneattribution> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0199,
@@ -214610,7 +216798,7 @@ The Gene Ontology (GO) project is a major bioinformatics initiative to develop a
     biotools:primaryContact "Arthur Wuster" .
 
 <https://bio.tools/genebase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3077,
@@ -214631,7 +216819,7 @@ The Gene Ontology (GO) project is a major bioinformatics initiative to develop a
     biotools:primaryContact "Maria Chiara Pelleri" .
 
 <https://bio.tools/genebasis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0632,
         edam:topic_2229,
@@ -214650,22 +216838,22 @@ The Gene Ontology (GO) project is a major bioinformatics initiative to develop a
 
 <https://bio.tools/genebreak> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2012" ;
-            sc:name "Sequence coordinates" ;
-            sc:sameAs "http://edamontology.org/data_2012" ],
+            sc:additionalType "http://edamontology.org/data_2012" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Sequence coordinates" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0916" ;
-            sc:name "Gene report" ;
-            sc:sameAs "http://edamontology.org/data_0916" ] ;
+            sc:additionalType "http://edamontology.org/data_0916" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Gene report" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ],
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Plot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1276" ;
-            sc:name "Nucleic acid features" ;
-            sc:sameAs "http://edamontology.org/data_1276" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1276" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Nucleic acid features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0157,
@@ -214684,7 +216872,7 @@ The Gene Ontology (GO) project is a major bioinformatics initiative to develop a
     biotools:primaryContact "Evert van den Broek" .
 
 <https://bio.tools/genebreaker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0622,
@@ -214704,7 +216892,7 @@ GeneBreaker is a tool which facilitates the creation of rare genetic disease sce
     sc:url "http://GeneBreaker.cmmt.ubc.ca" .
 
 <https://bio.tools/genebylocustag> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:description "Web service which allows users to search genes based on their locus tags." ;
@@ -214715,7 +216903,7 @@ GeneBreaker is a tool which facilitates the creation of rare genetic disease sce
     sc:url "http://mango.ctegd.uga.edu/jkissingLab/SWS/ToxodbAnnotatedWebservices/SearchForGenes/TextIDsOrganism/GeneIds/GeneByLocusTag.sawadl" .
 
 <https://bio.tools/genecards> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
@@ -214742,7 +216930,7 @@ GeneBreaker is a tool which facilitates the creation of rare genetic disease sce
     biotools:primaryContact "Support" .
 
 <https://bio.tools/genecat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -214760,7 +216948,7 @@ GeneBreaker is a tool which facilitates the creation of rare genetic disease sce
     sc:url "http://genecat.mpg.de" .
 
 <https://bio.tools/genecite> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3071,
         edam:topic_3489 ;
@@ -214775,7 +216963,7 @@ GeneBreaker is a tool which facilitates the creation of rare genetic disease sce
     sc:url "http://www.bioinformatics.org/wrair/" .
 
 <https://bio.tools/geneclassifiers> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3063,
@@ -214794,7 +216982,7 @@ GeneBreaker is a tool which facilitates the creation of rare genetic disease sce
     biotools:primaryContact "R Kuiper" .
 
 <https://bio.tools/geneclust> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0203,
@@ -214815,7 +217003,7 @@ GeneBreaker is a tool which facilitates the creation of rare genetic disease sce
         "Rumiana Nikolova" .
 
 <https://bio.tools/genecodis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0602,
@@ -214832,7 +217020,7 @@ GeneBreaker is a tool which facilitates the creation of rare genetic disease sce
     biotools:primaryContact <https://orcid.org/0000-0002-6173-7255> .
 
 <https://bio.tools/genecodis3> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -214853,8 +217041,56 @@ GeneBreaker is a tool which facilitates the creation of rare genetic disease sce
     sc:url "http://genecodis.cnb.csic.es/" ;
     biotools:primaryContact "GeneCoDis3 Support" .
 
+<https://bio.tools/geneconet> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1048" ;
+            sc:name "Database ID" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2299" ;
+            sc:name "Gene name" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0602,
+        edam:topic_2640,
+        edam:topic_3053 ;
+    sc:citation <https://doi.org/10.1016/J.CMPB.2021.106465>,
+        "pubmed:34715518" ;
+    sc:description "A web application server for constructing cancer patient-specific gene correlation networks with prognostic gene pairs." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_2454,
+        edam:operation_3659 ;
+    sc:isAccessibleForFree true ;
+    sc:name "GeneCoNet" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://geneconet.inha.ac.kr" .
+
+<https://bio.tools/genecup> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0089,
+        edam:topic_0218,
+        edam:topic_3172,
+        edam:topic_3474,
+        edam:topic_3517 ;
+    sc:citation <https://doi.org/10.1093/G3JOURNAL/JKAC059>,
+        "pmcid:PMC9073678",
+        "pubmed:35285473" ;
+    sc:description "GeneCup automatically extracts information from PubMed and NHGRI-EBI GWAS catalog on the relationship of any gene with a custom list of keywords hierarchically organized into an ontology." ;
+    sc:featureList edam:operation_0305,
+        edam:operation_0306,
+        edam:operation_3359 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "GeneCup" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/hakangunturkun/GeneCup" .
+
 <https://bio.tools/genedata_expressionist> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0114,
         edam:topic_0607,
@@ -214884,14 +217120,13 @@ GeneBreaker is a tool which facilitates the creation of rare genetic disease sce
 
 <https://bio.tools/genedb> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1026" ;
-            sc:name "Gene symbol" ;
-            sc:sameAs "http://edamontology.org/data_1026" ] ;
+            sc:additionalType "http://edamontology.org/data_1026" ;
+            sc:name "Gene symbol" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0916" ;
-            sc:name "Gene report" ;
-            sc:sameAs "http://edamontology.org/data_0916" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0916" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Gene report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0621 ;
     sc:citation <https://doi.org/10.1093/nar/gkr1032> ;
@@ -214906,7 +217141,7 @@ GeneBreaker is a tool which facilitates the creation of rare genetic disease sce
     sc:url "http://www.genedb.org/" .
 
 <https://bio.tools/genedistiller> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3063,
@@ -214926,7 +217161,7 @@ GeneBreaker is a tool which facilitates the creation of rare genetic disease sce
     sc:url "http://www.genedistiller.org" .
 
 <https://bio.tools/genedive> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0208,
         edam:topic_0634,
@@ -214944,7 +217179,7 @@ GeneBreaker is a tool which facilitates the creation of rare genetic disease sce
     biotools:primaryContact "Anagha Kulkarni" .
 
 <https://bio.tools/genedmrs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_0749,
@@ -214967,7 +217202,7 @@ GeneDMRs is an R package to detect the differentially methylated regions based o
     sc:url "https://github.com/xiaowangCN/GeneDMRs" .
 
 <https://bio.tools/geneex> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -214985,7 +217220,7 @@ Gene Circuit Explorer (GeneEx) is a systems-biology tool to visualize and simula
     sc:url "https://geneex.jax.org" .
 
 <https://bio.tools/geneexprdataanalyzer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0634,
@@ -215005,8 +217240,30 @@ Gene Circuit Explorer (GeneEx) is a systems-biology tool to visualize and simula
     sc:url "http://bioinformatics.upmc.edu/GE2/GEDA.html" ;
     biotools:primaryContact "James Lyons-Weiler" .
 
+<https://bio.tools/geneexpressionfromgeo> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_2640,
+        edam:topic_3170,
+        edam:topic_3179,
+        edam:topic_3518 ;
+    sc:citation <https://doi.org/10.1007/978-1-0716-1839-4_12>,
+        "pubmed:34902129" ;
+    sc:description "An R Package to Facilitate Data Reading from Gene Expression Omnibus (GEO)." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_0315,
+        edam:operation_2422 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "geneExpressionFromGEO" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/davidechicco/geneExpressionFromGEO" .
+
 <https://bio.tools/geneexpressionsignature> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -215028,22 +217285,20 @@ Gene Circuit Explorer (GeneEx) is a systems-biology tool to visualize and simula
 
 <https://bio.tools/genefarm> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2295" ;
-            sc:name "Gene ID" ;
-            sc:sameAs "http://edamontology.org/data_2295" ],
+            sc:additionalType "http://edamontology.org/data_2295" ;
+            sc:name "Gene ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2731" ;
-            sc:name "Protein family ID (GeneFarm)" ;
-            sc:sameAs "http://edamontology.org/data_2731" ] ;
+            sc:additionalType "http://edamontology.org/data_2731" ;
+            sc:name "Protein family ID (GeneFarm)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0916" ;
-            sc:name "Gene report" ;
-            sc:sameAs "http://edamontology.org/data_0916" ],
+            sc:additionalType "http://edamontology.org/data_0907" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Protein family report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0907" ;
-            sc:name "Protein family report" ;
-            sc:sameAs "http://edamontology.org/data_0907" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0916" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Gene report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0623,
         edam:topic_0780 ;
@@ -215054,7 +217309,7 @@ Gene Circuit Explorer (GeneEx) is a systems-biology tool to visualize and simula
     sc:url "http://urgi.versailles.inra.fr/Genefarm/index.htpl" .
 
 <https://bio.tools/genefas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0203,
@@ -215071,7 +217326,7 @@ Gene Circuit Explorer (GeneEx) is a systems-biology tool to visualize and simula
     sc:url "http://digbio.missouri.edu/software/genefas/" .
 
 <https://bio.tools/genefatt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0602,
@@ -215085,7 +217340,7 @@ Gene Circuit Explorer (GeneEx) is a systems-biology tool to visualize and simula
     sc:url "https://sites.google.com/site/desheng619/download" .
 
 <https://bio.tools/genefilter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3321 ;
@@ -215103,7 +217358,7 @@ Gene Circuit Explorer (GeneEx) is a systems-biology tool to visualize and simula
     biotools:primaryContact "BioConductor Package Maintainer" .
 
 <https://bio.tools/genefinder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0634,
@@ -215119,7 +217374,7 @@ Gene Circuit Explorer (GeneEx) is a systems-biology tool to visualize and simula
     sc:url "http://people.virginia.edu/~wc9c/genefinder/" .
 
 <https://bio.tools/genefisher> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0621,
@@ -215141,22 +217396,20 @@ Gene Circuit Explorer (GeneEx) is a systems-biology tool to visualize and simula
 
 <https://bio.tools/genefisher2> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2975" ;
-            sc:name "Nucleic acid sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_2975" ],
+            sc:additionalType "http://edamontology.org/data_2975" ;
+            sc:encodingFormat "http://edamontology.org/format_1210" ;
+            sc:name "Nucleic acid sequence (raw)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1219" ;
+            sc:name "Sequence alignment" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1240" ;
-            sc:name "PCR primers" ;
-            sc:sameAs "http://edamontology.org/data_1240" ],
+            sc:additionalType "http://edamontology.org/data_1240" ;
+            sc:name "PCR primers" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1276" ;
-            sc:name "Nucleic acid features" ;
-            sc:sameAs "http://edamontology.org/data_1276" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1276" ;
+            sc:name "Nucleic acid features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web API",
         "Web application" ;
@@ -215180,7 +217433,7 @@ Gene Circuit Explorer (GeneEx) is a systems-biology tool to visualize and simula
     sc:url "http://bibiserv.cebitec.uni-bielefeld.de/genefisher2" .
 
 <https://bio.tools/genefizz> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3314,
@@ -215195,7 +217448,7 @@ Gene Circuit Explorer (GeneEx) is a systems-biology tool to visualize and simula
     sc:url "http://pbga.pasteur.fr/GeneFizz/" .
 
 <https://bio.tools/genefriends> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0659,
         edam:topic_0749,
@@ -215215,7 +217468,7 @@ GeneFriends employs a RNAseq based gene co-expression network for candidate gene
     sc:url "http://www.genefriends.org/" .
 
 <https://bio.tools/genefu> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2640,
@@ -215237,7 +217490,7 @@ GeneFriends employs a RNAseq based gene co-expression network for candidate gene
         "Markus Schroeder" .
 
 <https://bio.tools/genega> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0099,
@@ -215257,7 +217510,7 @@ GeneFriends employs a RNAseq based gene co-expression network for candidate gene
     biotools:primaryContact "Zhenpeng Li" .
 
 <https://bio.tools/genegeneinter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0602,
@@ -215277,7 +217530,7 @@ GeneFriends employs a RNAseq based gene co-expression network for candidate gene
         "Mathieu Emily" .
 
 <https://bio.tools/genegenie> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0130,
         edam:topic_0203,
@@ -215300,7 +217553,7 @@ GeneFriends employs a RNAseq based gene co-expression network for candidate gene
     biotools:primaryContact "Neil Swainston" .
 
 <https://bio.tools/genegrouper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0203,
@@ -215318,7 +217571,7 @@ GeneFriends employs a RNAseq based gene co-expression network for candidate gene
     biotools:primaryContact "Erica M. Hartmann" .
 
 <https://bio.tools/genehub-gepis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2640,
@@ -215337,7 +217590,7 @@ GeneFriends employs a RNAseq based gene co-expression network for candidate gene
     sc:url "http://www.cgl.ucsf.edu/Research/genentech/genehub-gepis/" .
 
 <https://bio.tools/genehunter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3053 ;
@@ -215352,7 +217605,7 @@ GeneFriends employs a RNAseq based gene co-expression network for candidate gene
     sc:url "http://www.broadinstitute.org/ftp/distribution/software/genehunter/" .
 
 <https://bio.tools/genehunter-imprinting> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0634,
@@ -215372,14 +217625,12 @@ GeneFriends employs a RNAseq based gene co-expression network for candidate gene
 
 <https://bio.tools/geneid> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ] ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:name "Nucleic acid sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1276" ;
-            sc:name "Nucleic acid features" ;
-            sc:sameAs "http://edamontology.org/data_1276" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1276" ;
+            sc:name "Nucleic acid features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -215410,7 +217661,7 @@ GeneFriends employs a RNAseq based gene co-expression network for candidate gene
         "Support" .
 
 <https://bio.tools/geneimprint> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -215436,7 +217687,7 @@ GeneFriends employs a RNAseq based gene co-expression network for candidate gene
     biotools:primaryContact "Dr. Randy L. Jirtle" .
 
 <https://bio.tools/geneious> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0196,
@@ -215467,7 +217718,7 @@ GeneFriends employs a RNAseq based gene co-expression network for candidate gene
     biotools:primaryContact "Contact Form" .
 
 <https://bio.tools/genelab> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3172,
@@ -215486,7 +217737,7 @@ The NASA GeneLab Data Processing team and Analysis Working Group members have cr
     sc:url "https://genelab.nasa.gov/" .
 
 <https://bio.tools/genelink> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3071,
@@ -215502,8 +217753,27 @@ The NASA GeneLab Data Processing team and Analysis Working Group members have cr
     sc:softwareVersion "1.7" ;
     sc:url "http://research.nhgri.nih.gov/genelink/" .
 
+<https://bio.tools/genelink_scRNAseq> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0602,
+        edam:topic_3169,
+        edam:topic_3170,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC559>,
+        "pubmed:35961023" ;
+    sc:description "A supervised GRN inference framework, GENELink, to predict potential interactions from scRNA-seq data and gene linkage topology." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_2437,
+        edam:operation_2454 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "GENELink" ;
+    sc:url "https://github.com/zpliulab/GENELink" .
+
 <https://bio.tools/genemania> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0203,
@@ -215526,7 +217796,7 @@ The NASA GeneLab Data Processing team and Analysis Working Group members have cr
     biotools:primaryContact "GeneMANIA team" .
 
 <https://bio.tools/genemania_plugin> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0203,
@@ -215543,7 +217813,7 @@ The NASA GeneLab Data Processing team and Analysis Working Group members have cr
     biotools:primaryContact "Gary Bader" .
 
 <https://bio.tools/genemark> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0114 ;
@@ -215558,7 +217828,7 @@ The NASA GeneLab Data Processing team and Analysis Working Group members have cr
     sc:url "http://exon.gatech.edu/GeneMark/" .
 
 <https://bio.tools/genemark-ep> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_3174,
@@ -215576,7 +217846,7 @@ Experiments for ProtHint and GeneMark-EP/EP+ projects.""" ;
     sc:url "http://topaz.gatech.edu/GeneMark/" .
 
 <https://bio.tools/genemark-hm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3174,
@@ -215597,8 +217867,31 @@ Pipeline integrates three algorithms from GeneMark gene finder family, MetaGeneM
     sc:name "GeneMark-HM" ;
     sc:url "http://exon.gatech.edu/GeneMark/hmmchoice.html" .
 
+<https://bio.tools/genemarker> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0089,
+        edam:topic_0102,
+        edam:topic_2229,
+        edam:topic_3053,
+        edam:topic_3170 ;
+    sc:citation <https://doi.org/10.3389/FGENE.2021.763431>,
+        "pmcid:PMC8577352",
+        "pubmed:34764987" ;
+    sc:description "A Database and User Interface for scRNA-seq Marker Genes." ;
+    sc:featureList edam:operation_2422,
+        edam:operation_2454,
+        edam:operation_3435 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "GeneMarkeR" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://shiny.ph.iu.edu/GeneMarkeR/" .
+
 <https://bio.tools/genematcher> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0622,
@@ -215614,7 +217907,7 @@ Pipeline integrates three algorithms from GeneMark gene finder family, MetaGeneM
     sc:url "https://www.genematcher.org/" .
 
 <https://bio.tools/genemates> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0625,
@@ -215633,7 +217926,7 @@ GeneMates: an R package identifying horizontal gene co-transfer between bacteria
     sc:url "http://github.com/wanyuac/GeneMates" .
 
 <https://bio.tools/genemeta> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3168 ;
@@ -215651,7 +217944,7 @@ GeneMates: an R package identifying horizontal gene co-transfer between bacteria
     biotools:primaryContact "BioConductor Package Maintainer" .
 
 <https://bio.tools/genenet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -215667,7 +217960,7 @@ GeneMates: an R package identifying horizontal gene co-transfer between bacteria
     sc:url "http://strimmerlab.org/software/genenet/index.html" .
 
 <https://bio.tools/genenet_toolbox> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0602,
@@ -215685,7 +217978,7 @@ GeneMates: an R package identifying horizontal gene co-transfer between bacteria
     sc:url "http://avigailtaylor.github.io/gntat14/" .
 
 <https://bio.tools/genenetfinder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -215699,7 +217992,7 @@ GeneMates: an R package identifying horizontal gene co-transfer between bacteria
     sc:url "http://bclab.inha.ac.kr/GeneNetFinder/" .
 
 <https://bio.tools/genenetval> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0602,
@@ -215715,7 +218008,7 @@ GeneMates: an R package identifying horizontal gene co-transfer between bacteria
     sc:url "http://fgomezvela.github.io/GeneNetVal/" .
 
 <https://bio.tools/genenetwork> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3055,
@@ -215734,7 +218027,7 @@ GeneNetwork displays the additive values on the far right of many trait QTL maps
     sc:url "http://genenetwork.org" .
 
 <https://bio.tools/genenetworkbuilder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -215754,7 +218047,7 @@ GeneNetwork displays the additive values on the far right of many trait QTL maps
     biotools:primaryContact "Jianhong Ou" .
 
 <https://bio.tools/geneoverlap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3053 ;
@@ -215772,7 +218065,7 @@ GeneNetwork displays the additive values on the far right of many trait QTL maps
     biotools:primaryContact "Mount Sinai" .
 
 <https://bio.tools/genepainter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0099,
@@ -215790,7 +218083,7 @@ GeneNetwork displays the additive values on the far right of many trait QTL maps
     sc:url "http://www.motorprotein.de/genepainter.html" .
 
 <https://bio.tools/genepalette> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654,
@@ -215807,7 +218100,7 @@ GeneNetwork displays the additive values on the far right of many trait QTL maps
     sc:url "http://www.genepalette.org" .
 
 <https://bio.tools/genepanel> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0625,
@@ -215820,7 +218113,7 @@ GeneNetwork displays the additive values on the far right of many trait QTL maps
     sc:url "https://genepanel.iobio.io" .
 
 <https://bio.tools/geneparser> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -215834,7 +218127,7 @@ GeneNetwork displays the additive values on the far right of many trait QTL maps
     sc:url "http://stormo.wustl.edu/src/GenParser/" .
 
 <https://bio.tools/genepath> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0602,
@@ -215855,14 +218148,14 @@ GeneNetwork displays the additive values on the far right of many trait QTL maps
 
 <https://bio.tools/genepattern> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3162" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2058" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Workbench" ;
     sc:applicationSubCategory edam:topic_0085,
@@ -215886,7 +218179,7 @@ GeneNetwork displays the additive values on the far right of many trait QTL maps
     sc:url "http://www.broad.mit.edu/cancer/software/genepattern/download/" .
 
 <https://bio.tools/genepen> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0203,
@@ -215903,7 +218196,7 @@ GeneNetwork displays the additive values on the far right of many trait QTL maps
     sc:url "http://lcsb-portal.uni.lu/bioinformatics/" .
 
 <https://bio.tools/genepi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0749,
@@ -215925,7 +218218,7 @@ GenEpi is a package to uncover epistasis associated with phenotypes by a machine
     sc:url "https://github.com/Chester75321/GenEpi" .
 
 <https://bio.tools/geneplast> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3299 ;
@@ -215942,8 +218235,32 @@ GenEpi is a package to uncover epistasis associated with phenotypes by a machine
     sc:url "http://bioconductor.org/packages/release/bioc/html/geneplast.html" ;
     biotools:primaryContact "Mauro Castro" .
 
+<https://bio.tools/geneplexus> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0602,
+        edam:topic_0634,
+        edam:topic_2229,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAC335>,
+        "pmcid:PMC9252732",
+        "pubmed:35580053" ;
+    sc:description "A web-server for gene discovery using network-based machine learning." ;
+    sc:featureList edam:operation_2454,
+        edam:operation_3925,
+        edam:operation_3928 ;
+    sc:isAccessibleForFree true ;
+    sc:license "BSD-3-Clause" ;
+    sc:name "GenePlexus" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://www.geneplexus.net/" .
+
 <https://bio.tools/geneplotter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0622 ;
@@ -215961,7 +218278,7 @@ GenEpi is a package to uncover epistasis associated with phenotypes by a machine
     biotools:primaryContact "BioConductor Package Maintainer" .
 
 <https://bio.tools/genepopedit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0622,
@@ -215981,14 +218298,14 @@ GenEpi is a package to uncover epistasis associated with phenotypes by a machine
 
 <https://bio.tools/genepredtobed> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ] ;
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_3011" ;
+            sc:name "Annotation track" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_3003" ;
+            sc:name "Annotation track" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "Convert genePred file to a bed file" ;
     sc:featureList edam:operation_3267 ;
     sc:name "genepredtobed" ;
@@ -215997,14 +218314,12 @@ GenEpi is a package to uncover epistasis associated with phenotypes by a machine
 
 <https://bio.tools/genepredtogtf> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2012" ;
-            sc:name "Sequence coordinates" ;
-            sc:sameAs "http://edamontology.org/data_2012" ] ;
+            sc:additionalType "http://edamontology.org/data_2012" ;
+            sc:name "Sequence coordinates" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2012" ;
-            sc:name "Sequence coordinates" ;
-            sc:sameAs "http://edamontology.org/data_2012" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2012" ;
+            sc:name "Sequence coordinates" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:description "Convert genePred table or file to gtf" ;
     sc:featureList edam:operation_0260 ;
@@ -216013,7 +218328,7 @@ GenEpi is a package to uncover epistasis associated with phenotypes by a machine
     sc:url "https://github.com/ENCODE-DCC/kentUtils/blob/master/src/utils/genePredToBed/genePredToBed" .
 
 <https://bio.tools/geneprof> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_3169,
         edam:topic_3170 ;
@@ -216032,14 +218347,14 @@ GenEpi is a package to uncover epistasis associated with phenotypes by a machine
 
 <https://bio.tools/genepublisher> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3110" ;
-            sc:name "Raw microarray data" ;
-            sc:sameAs "http://edamontology.org/data_3110" ] ;
+            sc:additionalType "http://edamontology.org/data_3110" ;
+            sc:encodingFormat "http://edamontology.org/format_1638" ;
+            sc:name "Raw microarray data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0916" ;
-            sc:name "Gene report" ;
-            sc:sameAs "http://edamontology.org/data_0916" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0916" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Gene report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1093/nar/gkg629> ;
@@ -216057,7 +218372,7 @@ GenEpi is a package to uncover epistasis associated with phenotypes by a machine
     biotools:primaryContact "Thomas Sicheritz Pontén" .
 
 <https://bio.tools/genepy3d> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0611,
         edam:topic_0621,
@@ -216076,7 +218391,7 @@ GeNePy3D is an python library for quantitative geometry, in particular in the co
     sc:url "https://genepy3d.gitlab.io" .
 
 <https://bio.tools/gener> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654,
@@ -216090,7 +218405,7 @@ GeNePy3D is an python library for quantitative geometry, in particular in the co
     sc:url "http://www.cosbi.eu/research/prototypes/gener" .
 
 <https://bio.tools/general-viterbi-algorithm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_3307,
@@ -216106,7 +218421,7 @@ GeNePy3D is an python library for quantitative geometry, in particular in the co
     biotools:primaryContact "Jacob Shin" .
 
 <https://bio.tools/generalized-ras> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3315,
@@ -216122,7 +218437,7 @@ GeNePy3D is an python library for quantitative geometry, in particular in the co
     biotools:primaryContact "Umed Temurshoev" .
 
 <https://bio.tools/generalized-seir-epidemic-model> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3305,
@@ -216139,7 +218454,7 @@ GeNePy3D is an python library for quantitative geometry, in particular in the co
     biotools:primaryContact "E. Cheynet" .
 
 <https://bio.tools/generate-codon> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_3053 ;
@@ -216155,7 +218470,7 @@ GeNePy3D is an python library for quantitative geometry, in particular in the co
     biotools:primaryContact "Iddo Weiner" .
 
 <https://bio.tools/generate_oriented_clusters> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102 ;
     sc:description "“generate_oriented_clusters” is a program that generates single-linkage clusters of loci (where a locus can be on a chromosome, transcript, etc.)." ;
@@ -216165,7 +218480,7 @@ GeNePy3D is an python library for quantitative geometry, in particular in the co
     sc:url "http://www.mirz.unibas.ch/software.php" .
 
 <https://bio.tools/generecommender> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3053 ;
@@ -216184,10 +218499,9 @@ GeNePy3D is an python library for quantitative geometry, in particular in the co
 
 <https://bio.tools/generecon> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:name "Sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3053 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btl153> ;
@@ -216204,7 +218518,7 @@ GeNePy3D is an python library for quantitative geometry, in particular in the co
     biotools:primaryContact "Thomas Mailund" .
 
 <https://bio.tools/generegionscan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0622 ;
@@ -216224,7 +218538,7 @@ GeNePy3D is an python library for quantitative geometry, in particular in the co
     biotools:primaryContact <http://orcid.org/0000-0003-0708-9530> .
 
 <https://bio.tools/generfinder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0114,
         edam:topic_0203,
@@ -216242,7 +218556,7 @@ The GeneRFinder-Benchmark is a comprehensive benchmark data for gene prediction
     sc:url "http://github.com/railorena/geneRFinder" .
 
 <https://bio.tools/generic-simbiology-pbpk-model> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2815,
         edam:topic_3300,
@@ -216258,7 +218572,7 @@ The GeneRFinder-Benchmark is a comprehensive benchmark data for gene prediction
     biotools:primaryContact "MathWorks SimBiology Team" .
 
 <https://bio.tools/generxcluster> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0622 ;
@@ -216278,7 +218592,7 @@ The GeneRFinder-Benchmark is a comprehensive benchmark data for gene prediction
     biotools:primaryContact "Charles Berry" .
 
 <https://bio.tools/genes2wordcloud> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0623,
@@ -216294,7 +218608,7 @@ The GeneRFinder-Benchmark is a comprehensive benchmark data for gene prediction
     sc:url "http://www.maayanlab.net/G2W/create_wordcloud.php" .
 
 <https://bio.tools/genes_by_epitopes_presence> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0157 ;
@@ -216307,7 +218621,7 @@ The GeneRFinder-Benchmark is a comprehensive benchmark data for gene prediction
     sc:url "http://mango.ctegd.uga.edu/jkissingLab/SWS/ToxodbAnnotatedWebservices/SearchForGenes/Proteinfeatures/epitopepresence/GenesWithEpitopes.sawadl" .
 
 <https://bio.tools/genes_by_isoelectric_point> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API" ;
     sc:applicationSubCategory edam:topic_0157 ;
     sc:description "Web service that retrieves all genes whose protein product has an isoelectric point in a range that user specify." ;
@@ -216321,7 +218635,7 @@ The GeneRFinder-Benchmark is a comprehensive benchmark data for gene prediction
     sc:url "http://mango.ctegd.uga.edu/jkissingLab/contact.html" .
 
 <https://bio.tools/genes_by_molecular_weight> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0157 ;
@@ -216334,7 +218648,7 @@ The GeneRFinder-Benchmark is a comprehensive benchmark data for gene prediction
     sc:url "http://mango.ctegd.uga.edu/jkissingLab/SWS/ToxodbAnnotatedWebservices/SearchForGenes/Proteinattribute/molecularweight/GeneByMolecularWeight.sawadl" .
 
 <https://bio.tools/genes_by_organism> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:description "A web service which allows users to search genes based on an organism or a list of organisms." ;
@@ -216345,7 +218659,7 @@ The GeneRFinder-Benchmark is a comprehensive benchmark data for gene prediction
     sc:url "http://mango.ctegd.uga.edu/jkissingLab/SWS/ToxodbAnnotatedWebservices/SearchForGenes/TextIDsOrganism/Organism/GenesByTaxon.sawadl" .
 
 <https://bio.tools/genes_by_predicted_signal_peptide> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0157 ;
@@ -216358,7 +218672,7 @@ The GeneRFinder-Benchmark is a comprehensive benchmark data for gene prediction
     sc:url "http://mango.ctegd.uga.edu/jkissingLab/SWS/ToxodbAnnotatedWebservices/SearchForGenes/Proteinfeatures/predictedsignalpeptide/GenesWithSignalPeptide.sawadl" .
 
 <https://bio.tools/genes_by_transmembrane_domain_count> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0160 ;
@@ -216370,7 +218684,7 @@ The GeneRFinder-Benchmark is a comprehensive benchmark data for gene prediction
     sc:url "http://mango.ctegd.uga.edu/jkissingLab/SWS/ToxodbAnnotatedWebservices/SearchForGenes/Proteinfeatures/transmembranedomaincount/GenesByTransmembraneDomains.sawadl" .
 
 <https://bio.tools/genescreen> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_2533 ;
@@ -216383,7 +218697,7 @@ The GeneRFinder-Benchmark is a comprehensive benchmark data for gene prediction
     sc:url "http://dna.leeds.ac.uk/genescreen/" .
 
 <https://bio.tools/geneseeker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2815,
@@ -216403,7 +218717,7 @@ The GeneRFinder-Benchmark is a comprehensive benchmark data for gene prediction
     biotools:primaryContact "Support" .
 
 <https://bio.tools/geneselectmmd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3053 ;
@@ -216421,7 +218735,7 @@ The GeneRFinder-Benchmark is a comprehensive benchmark data for gene prediction
     biotools:primaryContact "Weiliang Qiu" .
 
 <https://bio.tools/geneselector> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -216441,7 +218755,7 @@ The GeneRFinder-Benchmark is a comprehensive benchmark data for gene prediction
     biotools:primaryContact "Martin Slawski" .
 
 <https://bio.tools/geneseqer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0114,
         edam:topic_0621,
@@ -216465,7 +218779,7 @@ The GeneRFinder-Benchmark is a comprehensive benchmark data for gene prediction
     biotools:primaryContact "Contact form" .
 
 <https://bio.tools/geneseqtofamily> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0623,
         edam:topic_3053,
@@ -216486,7 +218800,7 @@ The GeneRFinder-Benchmark is a comprehensive benchmark data for gene prediction
     biotools:primaryContact "Anil S Thanki" .
 
 <https://bio.tools/geneset2mirna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0602,
@@ -216509,7 +218823,7 @@ The GeneRFinder-Benchmark is a comprehensive benchmark data for gene prediction
     biotools:primaryContact "GeneSet2miRNA Support" .
 
 <https://bio.tools/genesetcluster> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3170,
@@ -216531,7 +218845,7 @@ Gene-set analysis (GSA) tools aim to provide biological context by identifying g
     sc:url "https://github.com/TranslationalBioinformaticsUnit/GeneSetCluster" .
 
 <https://bio.tools/geneshelf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602 ;
@@ -216547,7 +218861,7 @@ Gene-set analysis (GSA) tools aim to provide biological context by identifying g
     sc:url "http://hcil.snu.ac.kr/research/geneshelf" .
 
 <https://bio.tools/genesigdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0203,
@@ -216571,7 +218885,7 @@ Gene-set analysis (GSA) tools aim to provide biological context by identifying g
     biotools:primaryContact "John Quackenbush" .
 
 <https://bio.tools/genesilico> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -216593,7 +218907,7 @@ Gene-set analysis (GSA) tools aim to provide biological context by identifying g
     biotools:primaryContact "Lukasz Kozlowski" .
 
 <https://bio.tools/genesis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3056 ;
@@ -216611,7 +218925,7 @@ Gene-set analysis (GSA) tools aim to provide biological context by identifying g
     biotools:primaryContact "Matthew P. Conomos" .
 
 <https://bio.tools/genesis_microarray> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3474,
@@ -216626,8 +218940,28 @@ Gene-set analysis (GSA) tools aim to provide biological context by identifying g
     sc:softwareHelp <http://genome.tugraz.at/genesisclient/genesisclient_documentation.shtml> ;
     sc:url "http://genome.tugraz.at/genesisclient/genesisclient_description.shtml" .
 
+<https://bio.tools/genesis_silico> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0593,
+        edam:topic_3444,
+        edam:topic_3520 ;
+    sc:citation <https://doi.org/10.1021/ACS.ANALCHEM.1C04964>,
+        "pmcid:PMC9082496",
+        "pubmed:35050622" ;
+    sc:description "GENESIS (GENEration of Supersequences In Silico) systematically generates pulse programs for arbitrary NOAH supersequences compatible with Bruker spectrometers." ;
+    sc:featureList edam:operation_1812,
+        edam:operation_3435 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "GENESIS" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://nmr-genesis.co.uk" .
+
 <https://bio.tools/genesmash> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:description "Collates data from bioinformatics resources and provides automated gene-centric annotations." ;
@@ -216642,14 +218976,13 @@ Gene-set analysis (GSA) tools aim to provide biological context by identifying g
 
 <https://bio.tools/genesnps> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2805" ;
-            sc:name "GeneSNP ID" ;
-            sc:sameAs "http://edamontology.org/data_2805" ] ;
+            sc:additionalType "http://edamontology.org/data_2805" ;
+            sc:name "GeneSNP ID" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Sequence variations" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_2815,
@@ -216665,7 +218998,7 @@ Gene-set analysis (GSA) tools aim to provide biological context by identifying g
     biotools:primaryContact "Colleen Davis" .
 
 <https://bio.tools/genesplicer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_0780,
@@ -216681,7 +219014,7 @@ Gene-set analysis (GSA) tools aim to provide biological context by identifying g
     biotools:primaryContact "GeneSplicer team" .
 
 <https://bio.tools/genestitch> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0654 ;
@@ -216696,7 +219029,7 @@ Gene-set analysis (GSA) tools aim to provide biological context by identifying g
         "Yuzhen Ye" .
 
 <https://bio.tools/genestoryteller> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3071,
         edam:topic_3321 ;
@@ -216708,7 +219041,7 @@ Gene-set analysis (GSA) tools aim to provide biological context by identifying g
     sc:url "http://bioserver-3.bioacademy.gr/Bioserver/GeneStoryTeller/" .
 
 <https://bio.tools/genestructuretools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3308,
@@ -216727,7 +219060,7 @@ Gene-set analysis (GSA) tools aim to provide biological context by identifying g
     biotools:primaryContact "Beth Signal" .
 
 <https://bio.tools/genetalk> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_3175 ;
     sc:citation "pubmed:22826540" ;
@@ -216747,7 +219080,7 @@ Gene-set analysis (GSA) tools aim to provide biological context by identifying g
     biotools:primaryContact "Contact Form" .
 
 <https://bio.tools/genetclassifier> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -216768,7 +219101,7 @@ Gene-set analysis (GSA) tools aim to provide biological context by identifying g
     biotools:primaryContact <http://orcid.org/0000-0001-6104-7134> .
 
 <https://bio.tools/geneteflow> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0621,
@@ -216787,7 +219120,7 @@ GeneTEFlow is a reproducible and platform-independent workflow for the comprehen
     sc:url "https://github.com/zhongw2/GeneTEFlow" .
 
 <https://bio.tools/geneterpret> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0203,
@@ -216807,7 +219140,7 @@ GeneTerpret: a new way to interpret and visualize genomic variants dataGeneTerpr
     sc:url "https://geneterpret.com" .
 
 <https://bio.tools/genetests> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3053,
@@ -216827,8 +219160,30 @@ GeneTerpret: a new way to interpret and visualize genomic variants dataGeneTerpr
     sc:url "http://www.geneclinics.org/" ;
     biotools:primaryContact "Roberta A. Pagon" .
 
+<https://bio.tools/genetex> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0218,
+        edam:topic_2640,
+        edam:topic_3063,
+        edam:topic_3077 ;
+    sc:citation <https://doi.org/10.1093/JAMIAOPEN/OOAB082>,
+        "pmcid:PMC8476929",
+        "pubmed:34595403" ;
+    sc:description "GENomics Report TEXt mining R package and Shiny application designed to capture real-world clinico-genomic data." ;
+    sc:featureList edam:operation_0306,
+        edam:operation_1812,
+        edam:operation_3227 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "GENETEX" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/TheMillerLab/genetex" .
+
 <https://bio.tools/genetic_revision> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0219,
         edam:topic_0623 ;
@@ -216842,8 +219197,25 @@ GeneTerpret: a new way to interpret and visualize genomic variants dataGeneTerpr
     sc:softwareHelp <http://www.zti.aei.polsl.pl/w3/dmrozek/science/sgb/sgb.htm> ;
     sc:url "http://zti.polsl.pl/dmrozek/science/sgb/sgb.htm" .
 
+<https://bio.tools/genetic_u-net> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_3053,
+        edam:topic_3384,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1109/TMI.2021.3111679>,
+        "pubmed:34506278" ;
+    sc:description "Automatically Designed Deep Networks for Retinal Vessel Segmentation Using a Genetic Algorithm." ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "Genetic U-Net" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/96jhwei/Genetic-U-Net" .
+
 <https://bio.tools/geneticsdesign> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3053 ;
@@ -216861,7 +219233,7 @@ GeneTerpret: a new way to interpret and visualize genomic variants dataGeneTerpr
     biotools:primaryContact "The R Genetics Project" .
 
 <https://bio.tools/geneticsped> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0084 ;
@@ -216879,7 +219251,7 @@ GeneTerpret: a new way to interpret and visualize genomic variants dataGeneTerpr
     biotools:primaryContact "David Henderson" .
 
 <https://bio.tools/genetier> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0634,
@@ -216894,16 +219266,39 @@ GeneTerpret: a new way to interpret and visualize genomic variants dataGeneTerpr
     sc:softwareHelp <http://dna2.leeds.ac.uk:8080/expression/faq.jsp> ;
     sc:url "http://dna2.leeds.ac.uk:8080/expression/index.jsp" .
 
+<https://bio.tools/genetolist> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1904" ;
+            sc:name "Locus ID (EntrezGene)" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1026" ;
+            sc:name "Gene symbol" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0089,
+        edam:topic_3174,
+        edam:topic_3342 ;
+    sc:citation <https://doi.org/10.3390/biology11081113>,
+        "pmcid:PMC9332626",
+        "pubmed:35892968" ;
+    sc:description "A web application to assist with gene identifiers for the non-bioinformatics-savvy scientist." ;
+    sc:featureList edam:operation_3435 ;
+    sc:isAccessibleForFree true ;
+    sc:name "GeneToList" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://www.genetolist.com/" .
+
 <https://bio.tools/genetrail> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3021" ;
-            sc:name "UniProt accession" ;
-            sc:sameAs "http://edamontology.org/data_3021" ] ;
+            sc:additionalType "http://edamontology.org/data_3021" ;
+            sc:name "UniProt accession" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Pathway or network" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0203,
@@ -216922,18 +219317,17 @@ GeneTerpret: a new way to interpret and visualize genomic variants dataGeneTerpr
 
 <https://bio.tools/genetrail2> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0928" ;
-            sc:name "Gene expression profile" ;
-            sc:sameAs "http://edamontology.org/data_0928" ],
+            sc:additionalType "http://edamontology.org/data_0928" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Gene expression profile" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3021" ;
-            sc:name "UniProt accession" ;
-            sc:sameAs "http://edamontology.org/data_3021" ] ;
+            sc:additionalType "http://edamontology.org/data_3021" ;
+            sc:name "UniProt accession" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Pathway or network" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API",
         "Web application" ;
     sc:applicationSubCategory edam:topic_3391 ;
@@ -216953,7 +219347,7 @@ GeneTerpret: a new way to interpret and visualize genomic variants dataGeneTerpr
     biotools:primaryContact "Prof. Dr. Hans-Peter Lenhof" .
 
 <https://bio.tools/genetrank> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0208,
@@ -216970,7 +219364,7 @@ Reranked gene lists. Our final product is the set of top genes defined by (Def.
     sc:url "https://sbl.inria.fr/doc/Genetrank-user-manual.html" .
 
 <https://bio.tools/genetree> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654,
@@ -216987,7 +219381,7 @@ Reranked gene lists. Our final product is the set of top genes defined by (Def.
     sc:url "http://www.stats.ox.ac.uk/~griff/software.html" .
 
 <https://bio.tools/genetribe> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
@@ -217006,7 +219400,7 @@ Multilevel homolog-identification pipeline.""" ;
     sc:url "https://chenym1.github.io/genetribe/" .
 
 <https://bio.tools/geneva> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3170,
@@ -217025,14 +219419,14 @@ GENEVA allows you to identify RNA-sequencing datasets from the Gene Expression O
 
 <https://bio.tools/genevalidator> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_2200" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2085" ;
-            sc:name "Structure report" ;
-            sc:sameAs "http://edamontology.org/data_2085" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2085" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Structure report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -217059,14 +219453,13 @@ GENEVA allows you to identify RNA-sequencing datasets from the Gene Expression O
 
 <https://bio.tools/genevestigator> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3021" ;
-            sc:name "UniProt accession" ;
-            sc:sameAs "http://edamontology.org/data_3021" ] ;
+            sc:additionalType "http://edamontology.org/data_3021" ;
+            sc:name "UniProt accession" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0916" ;
-            sc:name "Gene report" ;
-            sc:sameAs "http://edamontology.org/data_0916" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0916" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Gene report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -217088,7 +219481,7 @@ GENEVA allows you to identify RNA-sequencing datasets from the Gene Expression O
     biotools:primaryContact "Support" .
 
 <https://bio.tools/geneview> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0634,
@@ -217109,7 +219502,7 @@ GENEVA allows you to identify RNA-sequencing datasets from the Gene Expression O
     biotools:primaryContact "GeneView Team" .
 
 <https://bio.tools/genewall_genome_browser> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0092,
@@ -217122,7 +219515,7 @@ GENEVA allows you to identify RNA-sequencing datasets from the Gene Expression O
     sc:url "http://www.wobblebase.com/#" .
 
 <https://bio.tools/geneweaver> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0621,
@@ -217145,27 +219538,25 @@ GENEVA allows you to identify RNA-sequencing datasets from the Gene Expression O
 
 <https://bio.tools/genewise> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ],
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:name "Protein sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3494" ;
-            sc:name "DNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3494" ] ;
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:name "DNA sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1381" ;
-            sc:name "Sequence alignment (pair)" ;
-            sc:sameAs "http://edamontology.org/data_1381" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1381" ;
+            sc:name "Sequence alignment (pair)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:author "Ewan Birney",
-        "Web Production" ;
-    sc:citation <https://doi.org/10.1101/gr.10.4.547> ;
+        "Job Dispatcher" ;
+    sc:citation <https://doi.org/10.1093/nar/gkac240>,
+        <https://doi.org/10.1101/gr.10.4.547> ;
     sc:description "Compare a protein sequence to a genomic DNA sequence, allowing for introns and frameshifting errors." ;
     sc:featureList edam:operation_0491,
         edam:operation_0495 ;
-    sc:name "GeneWise" ;
+    sc:name "GeneWise (EBI)" ;
     sc:operatingSystem "Linux",
         "Mac",
         "Windows" ;
@@ -217174,10 +219565,10 @@ GENEVA allows you to identify RNA-sequencing datasets from the Gene Expression O
         <http://www.ebi.ac.uk/about/terms-of-use> ;
     sc:softwareVersion "1" ;
     sc:url "http://www.ebi.ac.uk/Tools/psa/genewise/" ;
-    biotools:primaryContact "Web Production" .
+    biotools:primaryContact "Job Dispatcher Team" .
 
 <https://bio.tools/genex> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3519 ;
     sc:description "GenEx is a popular software for qPCR data processing and analysis. Built in a modular fashion GenEx provides a multitude of functionalities for the qPCR community, ranging from basic data editing and management to advanced cutting-edge data analysis." ;
@@ -217193,7 +219584,7 @@ GENEVA allows you to identify RNA-sequencing datasets from the Gene Expression O
     sc:url "http://www.gene-quantification.de/genex.html" .
 
 <https://bio.tools/genex_ontology> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0203,
         edam:topic_3489 ;
@@ -217211,7 +219602,7 @@ Gene expression (GenEx) semantic model.""" ;
     sc:url "https://biosoda.github.io/genex/" .
 
 <https://bio.tools/genexpi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0160,
@@ -217236,7 +219627,7 @@ Gene expression (GenEx) semantic model.""" ;
     biotools:primaryContact "Martin Modrák" .
 
 <https://bio.tools/genextender> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3169 ;
@@ -217254,7 +219645,7 @@ Gene expression (GenEx) semantic model.""" ;
     biotools:primaryContact "Bohdan Khomtchouk" .
 
 <https://bio.tools/genezilla> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0621,
@@ -217277,7 +219668,7 @@ Gene expression (GenEx) semantic model.""" ;
     biotools:primaryContact "Bill Majoros" .
 
 <https://bio.tools/geniac> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0769,
@@ -217290,7 +219681,7 @@ Gene expression (GenEx) semantic model.""" ;
     sc:url "https://geniac.readthedocs.io" .
 
 <https://bio.tools/geniatagger> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_3473 ;
     sc:citation <https://doi.org/10.3115/1220575.1220634> ;
@@ -217305,26 +219696,21 @@ Gene expression (GenEx) semantic model.""" ;
 
 <https://bio.tools/genie> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1088" ;
-            sc:name "Article ID" ;
-            sc:sameAs "http://edamontology.org/data_1088" ],
+            sc:additionalType "http://edamontology.org/data_1025" ;
+            sc:name "Gene identifier" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1025" ;
-            sc:name "Gene identifier" ;
-            sc:sameAs "http://edamontology.org/data_1025" ],
+            sc:additionalType "http://edamontology.org/data_1088" ;
+            sc:name "Article ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0968" ;
-            sc:name "Keyword" ;
-            sc:sameAs "http://edamontology.org/data_0968" ],
+            sc:additionalType "http://edamontology.org/data_0968" ;
+            sc:name "Keyword" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1869" ;
-            sc:name "Organism identifier" ;
-            sc:sameAs "http://edamontology.org/data_1869" ] ;
+            sc:additionalType "http://edamontology.org/data_1869" ;
+            sc:name "Organism identifier" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0916" ;
-            sc:name "Gene report" ;
-            sc:sameAs "http://edamontology.org/data_0916" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0916" ;
+            sc:name "Gene report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3473 ;
     sc:citation <https://doi.org/10.1093/nar/gkr246> ;
@@ -217339,7 +219725,7 @@ Gene expression (GenEx) semantic model.""" ;
     biotools:primaryContact "Jean Fred Fontaine" .
 
 <https://bio.tools/genie-codec> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:description "An Open Source MPEG-G Codec to compress and decompress FASTQ-files." ;
     sc:isAccessibleForFree true ;
@@ -217347,7 +219733,7 @@ Gene expression (GenEx) semantic model.""" ;
     sc:url "https://github.com/mitogen/genie" .
 
 <https://bio.tools/genie3> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -217364,7 +219750,7 @@ Gene expression (GenEx) semantic model.""" ;
     sc:url "https://github.com/vahuynh/GENIE3" .
 
 <https://bio.tools/genie_cbdm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0621,
@@ -217383,7 +219769,7 @@ Gene expression (GenEx) semantic model.""" ;
     biotools:primaryContact "Jean Fred Fontaine" .
 
 <https://bio.tools/genies> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0203,
@@ -217407,7 +219793,7 @@ Gene expression (GenEx) semantic model.""" ;
     biotools:primaryContact "Contact Form" .
 
 <https://bio.tools/genlib> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3056,
         edam:topic_3293 ;
@@ -217426,7 +219812,7 @@ Gene expression (GenEx) semantic model.""" ;
     biotools:primaryContact "Héloïse Gauvin" .
 
 <https://bio.tools/genmapp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0203,
@@ -217447,7 +219833,7 @@ Gene expression (GenEx) semantic model.""" ;
     biotools:primaryContact "Bruce R. Conklin" .
 
 <https://bio.tools/genmesh-avs-matlab-converter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:description "Convert an AVS file into a MATLAB 3D double array ready for visualisation. AVS is a file format used by many CFD packages (e.g. Fluent). This tool will import an AVS file into a MATLAB 3D double array ready for viewing the mesh and velocities with mesh, surf, slice or the excellent Slice-O-Matic." ;
     sc:isAccessibleForFree true ;
@@ -217460,7 +219846,7 @@ Gene expression (GenEx) semantic model.""" ;
     biotools:primaryContact "Alex Lomas" .
 
 <https://bio.tools/genmr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0154,
@@ -217481,7 +219867,7 @@ Gene expression (GenEx) semantic model.""" ;
     biotools:primaryContact "Contact Form" .
 
 <https://bio.tools/genn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3304,
         edam:topic_3474,
@@ -217499,16 +219885,39 @@ Gene expression (GenEx) semantic model.""" ;
     sc:url "http://genn-team.github.io/genn/" ;
     biotools:primaryContact "Support" .
 
+<https://bio.tools/gennet> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0602,
+        edam:topic_0625,
+        edam:topic_3056,
+        edam:topic_3305,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1038/S42003-021-02622-Z>,
+        "pmcid:PMC8448759",
+        "pubmed:34535759" ;
+    sc:description "GenNet is a command line tool that can be used to create neural networks for (mainly) genetics. GenNet gives the opportunity to let you decide what should be connected to what. Any information that groups knowledge can therefore be used to define connections in the network. For example, gene annotations can be used to group genetic variants into genes, as seen in the first layer of the image. This creates meaningful and interpretable connections. When the network is trained the network learns which connections are important for the predicted phenotype and assigns these connections a higher weight." ;
+    sc:featureList edam:operation_0417,
+        edam:operation_3196,
+        edam:operation_3927 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Apache-2.0" ;
+    sc:name "GenNet" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/ArnovanHilten/GenNet/" .
+
 <https://bio.tools/gennon-h> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0872" ;
-            sc:name "Phylogenetic tree" ;
-            sc:sameAs "http://edamontology.org/data_0872" ] ;
+            sc:additionalType "http://edamontology.org/data_0872" ;
+            sc:encodingFormat "http://edamontology.org/format_1910" ;
+            sc:name "Phylogenetic tree" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1383" ;
-            sc:name "Sequence alignment (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1383" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1383" ;
+            sc:encodingFormat "http://edamontology.org/format_1921" ;
+            sc:name "Sequence alignment (nucleic acid)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3299 ;
     sc:citation <https://doi.org/10.1186/1471-2105-13-216>,
@@ -217525,7 +219934,7 @@ Gene expression (GenEx) semantic model.""" ;
     biotools:primaryContact "Anna  Kedzierska" .
 
 <https://bio.tools/geno2pheno> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0625,
@@ -217543,7 +219952,7 @@ Gene expression (GenEx) semantic model.""" ;
     biotools:primaryContact "geno 2 pheno team" .
 
 <https://bio.tools/genocad> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0203,
@@ -217563,7 +219972,7 @@ Gene expression (GenEx) semantic model.""" ;
     biotools:primaryContact "Contact Form" .
 
 <https://bio.tools/genocanyon> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0219,
@@ -217579,7 +219988,7 @@ Gene expression (GenEx) semantic model.""" ;
     sc:url "http://genocanyon.med.yale.edu/" .
 
 <https://bio.tools/genocn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -217599,7 +220008,7 @@ Gene expression (GenEx) semantic model.""" ;
     biotools:primaryContact "Wei Sun" .
 
 <https://bio.tools/genocrypt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3053,
@@ -217615,7 +220024,7 @@ Gene expression (GenEx) semantic model.""" ;
     sc:url "http://genetics.cs.ucla.edu/crypto/" .
 
 <https://bio.tools/genoexp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0203,
@@ -217632,7 +220041,7 @@ Gene expression (GenEx) semantic model.""" ;
     sc:url "http://genie.weizmann.ac.il/pubs/GenoExp/" .
 
 <https://bio.tools/genogam> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3169 ;
@@ -217650,7 +220059,7 @@ Gene expression (GenEx) semantic model.""" ;
     biotools:primaryContact "Georg Stricker" .
 
 <https://bio.tools/genoinfer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0625,
@@ -217665,30 +220074,27 @@ Gene expression (GenEx) semantic model.""" ;
 
 <https://bio.tools/genolist> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2739" ;
-            sc:name "Gene ID (Genolist)" ;
-            sc:sameAs "http://edamontology.org/data_2739" ],
+            sc:additionalType "http://edamontology.org/data_2739" ;
+            sc:name "Gene ID (Genolist)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1026" ;
-            sc:name "Gene symbol" ;
-            sc:sameAs "http://edamontology.org/data_1026" ],
+            sc:additionalType "http://edamontology.org/data_1026" ;
+            sc:name "Gene symbol" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1868" ;
-            sc:name "Taxon" ;
-            sc:sameAs "http://edamontology.org/data_1868" ] ;
+            sc:additionalType "http://edamontology.org/data_1868" ;
+            sc:name "Taxon" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0916" ;
-            sc:name "Gene report" ;
-            sc:sameAs "http://edamontology.org/data_0916" ],
+            sc:additionalType "http://edamontology.org/data_0916" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Gene report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3028" ;
-            sc:name "Taxonomy" ;
-            sc:sameAs "http://edamontology.org/data_3028" ],
+            sc:additionalType "http://edamontology.org/data_0916" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Gene report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0916" ;
-            sc:name "Gene report" ;
-            sc:sameAs "http://edamontology.org/data_0916" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3028" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Taxonomy" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0797 ;
@@ -217705,7 +220111,7 @@ Gene expression (GenEx) semantic model.""" ;
     sc:url "http://genolist.pasteur.fr/GenoList" .
 
 <https://bio.tools/genom_2005> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3518 ;
     sc:description "Genom 2005 is a software to analyse microarrays or other experiment data. It has build in function predictions, pathway analysis, GO trees and a lot more." ;
@@ -217719,14 +220125,14 @@ Gene expression (GenEx) semantic model.""" ;
 
 <https://bio.tools/genomation> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ] ;
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:encodingFormat "http://edamontology.org/format_2306" ;
+            sc:name "Sequence features" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1636" ;
-            sc:name "Heat map" ;
-            sc:sameAs "http://edamontology.org/data_1636" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1636" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Heat map" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -217747,7 +220153,7 @@ Gene expression (GenEx) semantic model.""" ;
         <http://orcid.org/0000-0003-3606-6792> .
 
 <https://bio.tools/genomatix_genegrid> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2885,
@@ -217768,7 +220174,7 @@ Gene expression (GenEx) semantic model.""" ;
         "GeneGrid Support" .
 
 <https://bio.tools/genome-sampler> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0769,
@@ -217787,7 +220193,7 @@ Tools for sampling viral genomes across time of isolation, location of isolation
     sc:url "https://caporasolab.us/genome-sampler" .
 
 <https://bio.tools/genome-sketching> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3174,
@@ -217804,7 +220210,7 @@ Tools for sampling viral genomes across time of isolation, location of isolation
     sc:url "https://github.com/will-rowe/genome-sketching" .
 
 <https://bio.tools/genome-wide_evaluation> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3053,
@@ -217817,8 +220223,25 @@ Tools for sampling viral genomes across time of isolation, location of isolation
     sc:softwareHelp <http://statgen.ucr.edu/software.html> ;
     sc:url "http://statgen.ucr.edu/software.html" .
 
+<https://bio.tools/genome2or> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0080,
+        edam:topic_0196 ;
+    sc:citation <https://doi.org/10.1007/S11427-021-2081-6>,
+        "pubmed:35696018" ;
+    sc:description "Genome2OR is a genetic annotation tool based on HMMER, MAFFT and CD-HIT." ;
+    sc:featureList edam:operation_0226,
+        edam:operation_0362 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "Genome2OR" ;
+    sc:operatingSystem "Linux",
+        "Mac" ;
+    sc:url "https://github.com/ToHanwei/Genome2OR" .
+
 <https://bio.tools/genome_artist> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0798 ;
@@ -217837,7 +220260,7 @@ Tools for sampling viral genomes across time of isolation, location of isolation
     biotools:primaryContact "Alexandru Al. Ecovoiu" .
 
 <https://bio.tools/genome_classifier> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654,
@@ -217855,7 +220278,7 @@ Tools for sampling viral genomes across time of isolation, location of isolation
     sc:url "http://sandberg.cmb.ki.se/genomeclass/" .
 
 <https://bio.tools/genome_maps> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_2259 ;
@@ -217876,7 +220299,7 @@ Tools for sampling viral genomes across time of isolation, location of isolation
     biotools:primaryContact "babelomics@cipf.es  (Francisco García)" .
 
 <https://bio.tools/genome_projector> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0092,
@@ -217894,7 +220317,7 @@ Tools for sampling viral genomes across time of isolation, location of isolation
     sc:url "http://www.g-language.org/GenomeProjector/" .
 
 <https://bio.tools/genome_search_toolkit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654 ;
     sc:description "Genome Search Toolkit is a set of scripts for managing massive local homology searches." ;
@@ -217906,7 +220329,7 @@ Tools for sampling viral genomes across time of isolation, location of isolation
     sc:url "http://kirill-kryukov.com/study/tools/gst/" .
 
 <https://bio.tools/genome_strip> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_3175 ;
@@ -217921,7 +220344,7 @@ Tools for sampling viral genomes across time of isolation, location of isolation
     sc:url "http://software.broadinstitute.org/software/genomestrip/" .
 
 <https://bio.tools/genome_surveyor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0622,
@@ -217935,7 +220358,7 @@ Tools for sampling viral genomes across time of isolation, location of isolation
     sc:url "http://veda.cs.uiuc.edu/gs" .
 
 <https://bio.tools/genome_topology_network> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0152,
@@ -217962,22 +220385,19 @@ Unique gene connection information will be yielded as a result file.""" ;
 
 <https://bio.tools/genome_trax> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2012" ;
-            sc:name "Sequence coordinates" ;
-            sc:sameAs "http://edamontology.org/data_2012" ] ;
+            sc:additionalType "http://edamontology.org/data_2012" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Sequence coordinates" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2080" ;
-            sc:name "Database search results" ;
-            sc:sameAs "http://edamontology.org/data_2080" ],
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:name "Sequence variations" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ],
+            sc:additionalType "http://edamontology.org/data_2080" ;
+            sc:name "Database search results" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2353" ;
-            sc:name "Ontology data" ;
-            sc:sameAs "http://edamontology.org/data_2353" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2353" ;
+            sc:name "Ontology data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0089,
@@ -217998,7 +220418,7 @@ Unique gene connection information will be yielded as a result file.""" ;
     biotools:primaryContact "Support" .
 
 <https://bio.tools/genome_uplot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0199,
@@ -218015,8 +220435,20 @@ Unique gene connection information will be yielded as a result file.""" ;
     sc:url "https://github.com/gaitat/GenomeUPlot" ;
     biotools:primaryContact "George Vasmatzis" .
 
+<https://bio.tools/genomealignmenttools> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Suite" ;
+    sc:applicationSubCategory edam:topic_0622 ;
+    sc:description "Genome Alignment Tools are tools for improving the sensitivity and specificity of genome alignments." ;
+    sc:featureList edam:operation_0292,
+        edam:operation_0491 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "Genome Alignment Tools" ;
+    sc:url "https://github.com/hillerlab/GenomeAlignmentTools" .
+
 <https://bio.tools/genomebrowse> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0196,
@@ -218039,7 +220471,7 @@ Unique gene connection information will be yielded as a result file.""" ;
     biotools:primaryContact "Support" .
 
 <https://bio.tools/genomechronicler> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0625,
@@ -218063,14 +220495,14 @@ singularity container and workflow management.""" ;
 
 <https://bio.tools/genomecrispr> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0842" ;
-            sc:name "Identifier" ;
-            sc:sameAs "http://edamontology.org/data_0842" ] ;
+            sc:additionalType "http://edamontology.org/data_0842" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Identifier" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0920" ;
-            sc:name "Genotype/phenotype report" ;
-            sc:sameAs "http://edamontology.org/data_0920" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0920" ;
+            sc:encodingFormat "http://edamontology.org/format_3464" ;
+            sc:name "Genotype/phenotype report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0085,
         edam:topic_0625 ;
@@ -218089,7 +220521,7 @@ singularity container and workflow management.""" ;
     biotools:primaryContact "Ulrike Hardeland" .
 
 <https://bio.tools/genomed3plot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0654,
@@ -218105,7 +220537,7 @@ singularity container and workflow management.""" ;
     sc:url "https://github.com/brinkmanlab/GenomeD3Plot" .
 
 <https://bio.tools/genomedata> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3071 ;
@@ -218121,7 +220553,7 @@ singularity container and workflow management.""" ;
     biotools:primaryContact "Jay Hesselberth" .
 
 <https://bio.tools/genomedisco> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0102,
@@ -218138,7 +220570,7 @@ singularity container and workflow management.""" ;
         "Oana Ursu" .
 
 <https://bio.tools/genomediver> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0625,
@@ -218157,7 +220589,7 @@ Genomic and Phenotypic filters for the Genome Diver project.""" ;
     sc:url "https://github.com/GenomeDiver/" .
 
 <https://bio.tools/genomegraphs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0622 ;
@@ -218176,14 +220608,14 @@ Genomic and Phenotypic filters for the Genome Diver project.""" ;
 
 <https://bio.tools/genomeinfodb> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0987" ;
-            sc:name "Chromosome name" ;
-            sc:sameAs "http://edamontology.org/data_0987" ] ;
+            sc:additionalType "http://edamontology.org/data_0987" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Chromosome name" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0987" ;
-            sc:name "Chromosome name" ;
-            sc:sameAs "http://edamontology.org/data_0987" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0987" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Chromosome name" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3071 ;
@@ -218202,7 +220634,7 @@ Genomic and Phenotypic filters for the Genome Diver project.""" ;
     biotools:primaryContact "BioConductor Package Maintainer" .
 
 <https://bio.tools/genomeintervals> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0622 ;
@@ -218220,7 +220652,7 @@ Genomic and Phenotypic filters for the Genome Diver project.""" ;
     biotools:primaryContact "Julien Gagneur" .
 
 <https://bio.tools/genomejack> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3577 ;
@@ -218236,7 +220668,7 @@ Genomic and Phenotypic filters for the Genome Diver project.""" ;
     biotools:primaryContact "GenomeJack Support" .
 
 <https://bio.tools/genomemapper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0622 ;
@@ -218250,7 +220682,7 @@ Genomic and Phenotypic filters for the Genome Diver project.""" ;
     biotools:primaryContact "Korbinian Schneeberger" .
 
 <https://bio.tools/genomemasker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0632,
@@ -218267,7 +220699,7 @@ Genomic and Phenotypic filters for the Genome Diver project.""" ;
     sc:url "http://bioinfo.ut.ee/?page_id=167" .
 
 <https://bio.tools/genomenet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -218288,7 +220720,7 @@ Genomic and Phenotypic filters for the Genome Diver project.""" ;
     biotools:primaryContact "Feedback Form" .
 
 <https://bio.tools/genomepartitioner> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0622,
@@ -218305,13 +220737,13 @@ Genomic and Phenotypic filters for the Genome Diver project.""" ;
         "Matthias Christen" .
 
 <https://bio.tools/genomepy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "The goal is to have a simple and straightforward way to download and use genomic sequences. Currently, genomepy supports UCSC, Ensembl and NCBI." ;
     sc:name "genomepy" ;
     sc:url "https://github.com/vanheeringen-lab/genomepy" .
 
 <https://bio.tools/genomer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654 ;
     sc:description "Genomer is command line glue for genome projects. It simplifies the small but tedious tasks required when finishing a genome. Genomer makes it easy to reorganise contigs in a genome, map annotations on to the genome and generate the files required to submit a genome." ;
@@ -218324,14 +220756,13 @@ Genomic and Phenotypic filters for the Genome Diver project.""" ;
 
 <https://bio.tools/genomereviews> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2751" ;
-            sc:name "GenomeReviews ID" ;
-            sc:sameAs "http://edamontology.org/data_2751" ] ;
+            sc:additionalType "http://edamontology.org/data_2751" ;
+            sc:name "GenomeReviews ID" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2711" ;
-            sc:name "Genome report" ;
-            sc:sameAs "http://edamontology.org/data_2711" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2711" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Genome report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0621 ;
     sc:citation <https://doi.org/10.1089/omi.2006.10.114> ;
@@ -218342,46 +220773,36 @@ Genomic and Phenotypic filters for the Genome Diver project.""" ;
 
 <https://bio.tools/genomernai> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0842" ;
-            sc:name "Identifier" ;
-            sc:sameAs "http://edamontology.org/data_0842" ],
+            sc:additionalType "http://edamontology.org/data_1027" ;
+            sc:name "Gene ID (NCBI)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1033" ;
-            sc:name "Ensembl gene ID" ;
-            sc:sameAs "http://edamontology.org/data_1033" ],
+            sc:additionalType "http://edamontology.org/data_0842" ;
+            sc:name "Identifier" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1027" ;
-            sc:name "Gene ID (NCBI)" ;
-            sc:sameAs "http://edamontology.org/data_1027" ],
+            sc:additionalType "http://edamontology.org/data_3275" ;
+            sc:name "Phenotype name" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2118" ;
-            sc:name "Person identifier" ;
-            sc:sameAs "http://edamontology.org/data_2118" ],
+            sc:additionalType "http://edamontology.org/data_2118" ;
+            sc:name "Person identifier" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1026" ;
-            sc:name "Gene symbol" ;
-            sc:sameAs "http://edamontology.org/data_1026" ],
+            sc:additionalType "http://edamontology.org/data_1089" ;
+            sc:name "FlyBase ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3275" ;
-            sc:name "Phenotype name" ;
-            sc:sameAs "http://edamontology.org/data_3275" ],
+            sc:additionalType "http://edamontology.org/data_1187" ;
+            sc:name "PubMed ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1187" ;
-            sc:name "PubMed ID" ;
-            sc:sameAs "http://edamontology.org/data_1187" ],
+            sc:additionalType "http://edamontology.org/data_1033" ;
+            sc:name "Ensembl gene ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1089" ;
-            sc:name "FlyBase ID" ;
-            sc:sameAs "http://edamontology.org/data_1089" ] ;
+            sc:additionalType "http://edamontology.org/data_1026" ;
+            sc:name "Gene symbol" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2080" ;
-            sc:name "Database search results" ;
-            sc:sameAs "http://edamontology.org/data_2080" ],
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:name "Plot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2080" ;
+            sc:name "Database search results" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_3523 ;
     sc:author "Benedikt Rauscher",
@@ -218406,18 +220827,18 @@ Genomic and Phenotypic filters for the Genome Diver project.""" ;
 
 <https://bio.tools/genomes> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1050" ;
-            sc:name "File name" ;
-            sc:sameAs "http://edamontology.org/data_1050" ] ;
+            sc:additionalType "http://edamontology.org/data_1050" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "File name" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2711" ;
-            sc:name "Genome report" ;
-            sc:sameAs "http://edamontology.org/data_2711" ],
+            sc:additionalType "http://edamontology.org/data_2711" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Genome report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3181" ;
-            sc:name "Sequence assembly report" ;
-            sc:sameAs "http://edamontology.org/data_3181" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3181" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Sequence assembly report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0622 ;
@@ -218435,7 +220856,7 @@ Genomic and Phenotypic filters for the Genome Diver project.""" ;
     biotools:primaryContact "Chris Stubben" .
 
 <https://bio.tools/genomescan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0114,
@@ -218451,7 +220872,7 @@ Genomic and Phenotypic filters for the Genome Diver project.""" ;
     biotools:primaryContact "Chris Burge" .
 
 <https://bio.tools/genomestudio> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3516 ;
     sc:description "Visualize and analyze data generated on Illumina array platforms with GenomeStudio Software. This solution supports the genotyping analysis of microarray data. Performance-optimized tools and a graphical interface enable you to convert data into meaningful results." ;
@@ -218464,7 +220885,7 @@ Genomic and Phenotypic filters for the Genome Diver project.""" ;
     sc:url "http://www.illumina.com/techniques/microarrays/array-data-analysis-experimental-design/genomestudio.html" .
 
 <https://bio.tools/genometa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3174 ;
@@ -218483,14 +220904,12 @@ Genomic and Phenotypic filters for the Genome Diver project.""" ;
 
 <https://bio.tools/genometester> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1240" ;
-            sc:name "PCR primers" ;
-            sc:sameAs "http://edamontology.org/data_1240" ] ;
+            sc:additionalType "http://edamontology.org/data_1240" ;
+            sc:name "PCR primers" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1276" ;
-            sc:name "Nucleic acid features" ;
-            sc:sameAs "http://edamontology.org/data_1276" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1276" ;
+            sc:name "Nucleic acid features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1186/1471-2105-7-172> ;
@@ -218508,7 +220927,7 @@ Genomic and Phenotypic filters for the Genome Diver project.""" ;
     biotools:primaryContact "Reidar Andreson" .
 
 <https://bio.tools/genomethreader> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0114 ;
@@ -218525,7 +220944,7 @@ Genomic and Phenotypic filters for the Genome Diver project.""" ;
     biotools:primaryContact "Gordon Gremme" .
 
 <https://bio.tools/genometools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3511 ;
@@ -218542,7 +220961,7 @@ Genomic and Phenotypic filters for the Genome Diver project.""" ;
     biotools:primaryContact "GenomeTools Support" .
 
 <https://bio.tools/genometrafac> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0659,
@@ -218562,7 +220981,7 @@ Genomic and Phenotypic filters for the Genome Diver project.""" ;
     biotools:primaryContact "Anil Goud Jegga" .
 
 <https://bio.tools/genometricorr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0622 ;
     sc:citation <https://doi.org/10.1371/JOURNAL.PCBI.1002529>,
@@ -218581,7 +221000,7 @@ Genomic and Phenotypic filters for the Genome Diver project.""" ;
     sc:url "http://genometricorr.sourceforge.net" .
 
 <https://bio.tools/genomeview> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0092 ;
     sc:citation <https://doi.org/10.1093/nar/gkr995> ;
@@ -218598,7 +221017,7 @@ Genomic and Phenotypic filters for the Genome Diver project.""" ;
     sc:url "http://genomeview.org" .
 
 <https://bio.tools/genomic-signature-fcgr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0654 ;
@@ -218617,10 +221036,9 @@ Genomic and Phenotypic filters for the Genome Diver project.""" ;
 
 <https://bio.tools/genomic_annotation_in_livestock_for_positional_candidate_loci_gallo> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1274" ;
-            sc:name "Map" ;
-            sc:sameAs "http://edamontology.org/data_1274" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1274" ;
+            sc:name "Map" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0622 ;
     sc:description "Genomic Annotation in Livestock for positional candidate LOci (GALLO) is an R package developed for the accurate annotation of genes and quantitative trait loci (QTLs) located in regions identified in common genomic analyses performed in livestock, such as Genome-Wide Association Studies and transcriptomics using RNA-Sequencing. Moreover, GALLO allows the graphical visualization of gene and QTL annotation results, data comparison among different grouping factors (e.g., methods, breeds, tissues, statistical models, studies, etc.), and QTL enrichment in different livestock species including cattle, pigs, sheep, and chickens, etc." ;
     sc:featureList edam:operation_0337 ;
@@ -218629,7 +221047,7 @@ Genomic and Phenotypic filters for the Genome Diver project.""" ;
     sc:url "https://cran.r-project.org/web/packages/GALLO/vignettes/GALLO.html" .
 
 <https://bio.tools/genomic_hyperbrowser> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0204,
@@ -218651,22 +221069,22 @@ Genomic and Phenotypic filters for the Genome Diver project.""" ;
 
 <https://bio.tools/genomicalignments> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1270" ;
-            sc:name "Feature table" ;
-            sc:sameAs "http://edamontology.org/data_1270" ],
+            sc:additionalType "http://edamontology.org/data_1270" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
+            sc:name "Feature table" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1383" ;
-            sc:name "Sequence alignment (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1383" ] ;
+            sc:additionalType "http://edamontology.org/data_1383" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
+            sc:name "Sequence alignment (nucleic acid)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1383" ;
-            sc:name "Sequence alignment (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1383" ],
+            sc:additionalType "http://edamontology.org/data_1383" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Sequence alignment (nucleic acid)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0867" ;
-            sc:name "Sequence alignment report" ;
-            sc:sameAs "http://edamontology.org/data_0867" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0867" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Sequence alignment report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0080 ;
@@ -218688,7 +221106,7 @@ Genomic and Phenotypic filters for the Genome Diver project.""" ;
     biotools:primaryContact "BioConductor Package Maintainer" .
 
 <https://bio.tools/genomicconsensus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0102 ;
     sc:description "The GenomicConsensus package provides the variantCaller tool, which allows you to apply the Quiver or Arrow algorithm to mapped PacBio reads to get consensus and variant calls." ;
@@ -218700,7 +221118,7 @@ Genomic and Phenotypic filters for the Genome Diver project.""" ;
     biotools:primaryContact "Pacific Biosciences" .
 
 <https://bio.tools/genomicdatacommons> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:description "Programmatically access the NIH / NCI Genomic Data Commons RESTful service." ;
@@ -218715,36 +221133,58 @@ Genomic and Phenotypic filters for the Genome Diver project.""" ;
     sc:url "http://bioconductor.org/packages/release/bioc/html/GenomicDataCommons.html" ;
     biotools:primaryContact "Davis Sean" .
 
+<https://bio.tools/genomicdistributions> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0204,
+        edam:topic_3169,
+        edam:topic_3173 ;
+    sc:citation <https://doi.org/10.1186/S12864-022-08467-Y>,
+        "pmcid:PMC9003978",
+        "pubmed:35413804" ;
+    sc:description "An R package that provides functions for calculating and visualizing a variety of statistics for a collection of genomic ranges." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3096,
+        edam:operation_3435 ;
+    sc:isAccessibleForFree true ;
+    sc:license "BSD-2-Clause" ;
+    sc:name "GenomicDistributions" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://bioconductor.org/packages/release/bioc/manuals/GenomicDistributions/man/GenomicDistributions.pdf> ;
+    sc:url "https://github.com/databio/GenomicDistributions" .
+
 <https://bio.tools/genomicfeatures> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1050" ;
-            sc:name "File name" ;
-            sc:sameAs "http://edamontology.org/data_1050" ],
+            sc:additionalType "http://edamontology.org/data_1050" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "File name" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3134" ;
-            sc:name "Gene transcript report" ;
-            sc:sameAs "http://edamontology.org/data_3134" ],
+            sc:additionalType "http://edamontology.org/data_1270" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Feature table" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1270" ;
-            sc:name "Feature table" ;
-            sc:sameAs "http://edamontology.org/data_1270" ] ;
+            sc:additionalType "http://edamontology.org/data_3134" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Gene transcript report" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1017" ;
-            sc:name "Sequence range" ;
-            sc:sameAs "http://edamontology.org/data_1017" ],
+            sc:additionalType "http://edamontology.org/data_1017" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Sequence range" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3134" ;
-            sc:name "Gene transcript report" ;
-            sc:sameAs "http://edamontology.org/data_3134" ],
+            sc:additionalType "http://edamontology.org/data_3134" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Gene transcript report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ],
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Sequence record" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3071,
@@ -218767,7 +221207,7 @@ Genomic and Phenotypic filters for the Genome Diver project.""" ;
     biotools:primaryContact "BioConductor Package Maintainer" .
 
 <https://bio.tools/genomicfiles> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0622,
@@ -218788,22 +221228,22 @@ Genomic and Phenotypic filters for the Genome Diver project.""" ;
 
 <https://bio.tools/genomicinteractions> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1017" ;
-            sc:name "Sequence range" ;
-            sc:sameAs "http://edamontology.org/data_1017" ],
+            sc:additionalType "http://edamontology.org/data_1017" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Sequence range" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1270" ;
-            sc:name "Feature table" ;
-            sc:sameAs "http://edamontology.org/data_1270" ] ;
+            sc:additionalType "http://edamontology.org/data_1270" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Feature table" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1276" ;
-            sc:name "Nucleic acid features" ;
-            sc:sameAs "http://edamontology.org/data_1276" ],
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Plot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1276" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Nucleic acid features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0128,
@@ -218825,14 +221265,14 @@ Genomic and Phenotypic filters for the Genome Diver project.""" ;
 
 <https://bio.tools/genomicranges> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1276" ;
-            sc:name "Nucleic acid features" ;
-            sc:sameAs "http://edamontology.org/data_1276" ] ;
+            sc:additionalType "http://edamontology.org/data_1276" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Nucleic acid features" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1017" ;
-            sc:name "Sequence range" ;
-            sc:sameAs "http://edamontology.org/data_1017" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1017" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Sequence range" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -218854,7 +221294,7 @@ Genomic and Phenotypic filters for the Genome Diver project.""" ;
     biotools:primaryContact "BioConductor Package Maintainer" .
 
 <https://bio.tools/genomics_virtual_lab> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_3070 ;
     sc:citation <https://doi.org/10.1371/journal.pone.0140829>,
@@ -218878,7 +221318,7 @@ Genomic and Phenotypic filters for the Genome Diver project.""" ;
     biotools:primaryContact "Australia" .
 
 <https://bio.tools/genomicscores> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3053,
         edam:topic_3168 ;
@@ -218896,7 +221336,7 @@ Genomic and Phenotypic filters for the Genome Diver project.""" ;
     biotools:primaryContact "Robert Castelo" .
 
 <https://bio.tools/genomicsupersignature> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3170,
@@ -218915,7 +221355,7 @@ Genomic and Phenotypic filters for the Genome Diver project.""" ;
     sc:url "https://github.com/shbrief/GenomicSuperSignaturePaper/" .
 
 <https://bio.tools/genomictools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3169,
@@ -218933,7 +221373,7 @@ Genomic and Phenotypic filters for the Genome Diver project.""" ;
     biotools:primaryContact "A. Tsirigo" .
 
 <https://bio.tools/genomictuples> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0080 ;
@@ -218950,7 +221390,7 @@ Genomic and Phenotypic filters for the Genome Diver project.""" ;
     biotools:primaryContact "Peter Hickey" .
 
 <https://bio.tools/genominator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0622,
@@ -218971,7 +221411,7 @@ Genomic and Phenotypic filters for the Genome Diver project.""" ;
     biotools:primaryContact "James Bullard" .
 
 <https://bio.tools/genomix> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0622,
@@ -218987,7 +221427,7 @@ Genomic and Phenotypic filters for the Genome Diver project.""" ;
     sc:url "https://github.com/uci-cbcl/genomix" .
 
 <https://bio.tools/genomizer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3053,
         edam:topic_3517 ;
@@ -219002,7 +221442,7 @@ Genomic and Phenotypic filters for the Genome Diver project.""" ;
     sc:url "http://www.ikmb.uni-kiel.de/resources/download-tools/software/genomizer" .
 
 <https://bio.tools/genomon_itdetector> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654,
@@ -219017,7 +221457,7 @@ Genomic and Phenotypic filters for the Genome Diver project.""" ;
     sc:url "https://github.com/ken0-1n/Genomon-ITDetector" .
 
 <https://bio.tools/genomorama> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0092,
@@ -219035,14 +221475,13 @@ Genomic and Phenotypic filters for the Genome Diver project.""" ;
 
 <https://bio.tools/genonets> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0920" ;
-            sc:name "Genotype/phenotype report" ;
-            sc:sameAs "http://edamontology.org/data_0920" ] ;
+            sc:additionalType "http://edamontology.org/data_0920" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Genotype/phenotype report" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:name "Pathway or network" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_2259,
@@ -219060,7 +221499,7 @@ Genomic and Phenotypic filters for the Genome Diver project.""" ;
     sc:url "http://ieu-genonets.uzh.ch" .
 
 <https://bio.tools/genopheno> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0625,
@@ -219081,7 +221520,7 @@ GenoPheno-CatalogShiny is an R Shiny App developed to provide a dynamic on-line
     sc:url "https://avillachlab.shinyapps.io/genophenocatalog/" .
 
 <https://bio.tools/genopo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0769,
@@ -219096,7 +221535,7 @@ GenoPheno-CatalogShiny is an R Shiny App developed to provide a dynamic on-line
     sc:url "https://play.google.com/store/apps/details?id=com.mobilegenomics.genopo" .
 
 <https://bio.tools/genoppi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -219116,7 +221555,7 @@ Genoppi is an open-source software for performing quality control and analyzing
     sc:url "http://github.com/lagelab/Genoppi" .
 
 <https://bio.tools/genoread> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:citation "pubmed:23042248" ;
@@ -219131,7 +221570,7 @@ Genoppi is an open-source software for performing quality control and analyzing
     biotools:primaryContact "Jean Peccoud" .
 
 <https://bio.tools/genorigin> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0621,
@@ -219148,7 +221587,7 @@ Genoppi is an open-source software for performing quality control and analyzing
     sc:url "http://genorigin.chenzxlab.cn/" .
 
 <https://bio.tools/genosa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0204,
@@ -219166,7 +221605,7 @@ Genoppi is an open-source software for performing quality control and analyzing
     sc:url "http://140.113.239.45/GeNOSA/" .
 
 <https://bio.tools/genoscapist> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3168,
         edam:topic_3308,
@@ -219186,7 +221625,7 @@ Genoscapist is a web-tool generating high-quality images for interactive visuali
     sc:url "https://genoscapist.migale.inrae.fr" .
 
 <https://bio.tools/genoset> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0622 ;
@@ -219204,7 +221643,7 @@ Genoscapist is a web-tool generating high-quality images for interactive visuali
     biotools:primaryContact "Peter M. Haverty" .
 
 <https://bio.tools/genotan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0199,
@@ -219221,22 +221660,22 @@ Genoscapist is a web-tool generating high-quality images for interactive visuali
 
 <https://bio.tools/genotypeeval> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1276" ;
-            sc:name "Nucleic acid features" ;
-            sc:sameAs "http://edamontology.org/data_1276" ],
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence variations" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ] ;
+            sc:additionalType "http://edamontology.org/data_1276" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Nucleic acid features" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2955" ;
-            sc:name "Sequence report" ;
-            sc:sameAs "http://edamontology.org/data_2955" ],
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Plot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2955" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Sequence report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -219254,7 +221693,7 @@ Genoscapist is a web-tool generating high-quality images for interactive visuali
     biotools:primaryContact "Jennifer Tom" .
 
 <https://bio.tools/genotypemapper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0625,
@@ -219272,13 +221711,8 @@ GenoTypeMapper (GTM) is a software to compare, visualize and analyze genomic dat
     sc:name "GenoTypeMapper" ;
     sc:url "http://www.genotypemapper.org" .
 
-<https://bio.tools/genotyping_by_sequencing_gbs> a sc:SoftwareApplication ;
-    sc:description "CD Genomics has been providing the accurate and affordable genotyping by sequencing service for couple of years. We employ the latest Illumina sequencing platforms to obtain genetic variations information in a more efficient way. CD Genomics is proud to provide genotyping by sequencing service to advance your population based genotyping studies in an effective and economic way. Please contact us for more information and a detailed quote." ;
-    sc:name "Genotyping by Sequencing (GBS)" ;
-    sc:url "https://www.cd-genomics.com/Genotyping-by-Sequencing-GBS.html" .
-
 <https://bio.tools/genova> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0749,
@@ -219297,7 +221731,7 @@ The increase in interest for Hi-C methods in the chromatin community has led to
     sc:url "http://github.com/dewitlab/GENOVA" .
 
 <https://bio.tools/genovar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0092,
@@ -219316,7 +221750,7 @@ The increase in interest for Hi-C methods in the chromatin community has led to
     biotools:primaryContact "Kwang Su Jung" .
 
 <https://bio.tools/genovault> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3168,
         edam:topic_3263,
         edam:topic_3316,
@@ -219332,7 +221766,7 @@ The increase in interest for Hi-C methods in the chromatin community has led to
     sc:url "https://github.com/bioinformatics-cdac/GenoVault" .
 
 <https://bio.tools/genoviewer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0092,
@@ -219345,7 +221779,7 @@ The increase in interest for Hi-C methods in the chromatin community has led to
     biotools:primaryContact "AstridBio Technologies Kft." .
 
 <https://bio.tools/genowap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0634,
@@ -219364,7 +221798,7 @@ The increase in interest for Hi-C methods in the chromatin community has led to
     sc:url "http://genocanyon.med.yale.edu/GenoWAP" .
 
 <https://bio.tools/genozip> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0102,
@@ -219386,7 +221820,7 @@ The increase in interest for Hi-C methods in the chromatin community has led to
     sc:url "http://github.com/divonlan/genozip" .
 
 <https://bio.tools/genphen> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0199,
@@ -219406,7 +221840,7 @@ The increase in interest for Hi-C methods in the chromatin community has led to
     biotools:primaryContact "Simo Kitanovski" .
 
 <https://bio.tools/genppi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0114,
         edam:topic_0128,
@@ -219426,10 +221860,10 @@ Ab initio protein interation network generator.""" ;
 
 <https://bio.tools/genprobis> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_2187" ;
+            sc:name "Protein structure" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0749,
@@ -219444,7 +221878,7 @@ Ab initio protein interation network generator.""" ;
     sc:url "http://genprobis.insilab.org/" .
 
 <https://bio.tools/genra-py> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2258,
@@ -219460,7 +221894,7 @@ Ab initio protein interation network generator.""" ;
     biotools:primaryContact <https://orcid.org/0000-0003-0808-0140> .
 
 <https://bio.tools/genrank> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3053 ;
@@ -219477,8 +221911,31 @@ Ab initio protein interation network generator.""" ;
     sc:url "http://bioconductor.org/packages/release/bioc/html/GenRank.html" ;
     biotools:primaryContact "Chakravarthi Kanduri" .
 
+<https://bio.tools/genrisk> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0625,
+        edam:topic_3474,
+        edam:topic_3676 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC152>,
+        "pmcid:PMC9048672",
+        "pubmed:35266528" ;
+    sc:description "GenRisk is a package that implements different gene-based scoring schemes to analyze and find significant genes within a phenotype in a population." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3196,
+        edam:operation_3659,
+        edam:operation_3791 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "GenRisk" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://genrisk.readthedocs.io/en/latest/> ;
+    sc:url "https://github.com/AldisiRana/GenRisk" .
+
 <https://bio.tools/gens> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0602,
@@ -219495,7 +221952,7 @@ Ab initio protein interation network generator.""" ;
     sc:url "http://sourceforge.net/projects/gensim/" .
 
 <https://bio.tools/genscalpel> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654,
@@ -219512,7 +221969,7 @@ Ab initio protein interation network generator.""" ;
     sc:url "https://code.google.com/archive/p/genscalpel/" .
 
 <https://bio.tools/genscan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0114,
         edam:topic_0654,
@@ -219528,7 +221985,7 @@ Ab initio protein interation network generator.""" ;
     sc:url "http://genes.mit.edu/GENSCANinfo.html" .
 
 <https://bio.tools/gensearchngs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3676 ;
     sc:citation <https://doi.org/10.1155/2015/403497> ;
@@ -219547,7 +222004,7 @@ Ab initio protein interation network generator.""" ;
     sc:url "http://www.phenosystems.com/www/index.php/products/gensearchngs" .
 
 <https://bio.tools/genseed> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btn283> ;
@@ -219563,18 +222020,15 @@ Ab initio protein interation network generator.""" ;
 
 <https://bio.tools/genskew> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3497" ;
-            sc:name "DNA sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_3497" ] ;
+            sc:additionalType "http://edamontology.org/data_3497" ;
+            sc:name "DNA sequence (raw)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ],
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:name "Image" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:name "Sequence features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0622 ;
@@ -219594,7 +222048,7 @@ Ab initio protein interation network generator.""" ;
     sc:url "http://genskew.csb.univie.ac.at/" .
 
 <https://bio.tools/genssi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_2259,
@@ -219613,7 +222067,7 @@ Ab initio protein interation network generator.""" ;
         "Thomas Ligon" .
 
 <https://bio.tools/gentb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0108,
@@ -219634,7 +222088,7 @@ Ab initio protein interation network generator.""" ;
         "Maha R Farhat" .
 
 <https://bio.tools/genuMet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -219651,7 +222105,7 @@ distinguish genuine signal of untargeted metabolites from measurement artifacts
     sc:url "https://github.com/liucaomics/genuMet" .
 
 <https://bio.tools/genui> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0209,
@@ -219673,8 +222127,28 @@ distinguish genuine signal of untargeted metabolites from measurement artifacts
     sc:softwareHelp <https://martin-sicho.github.io/genui/docs/index.html> ;
     sc:url "https://github.com/martin-sicho/genui" .
 
+<https://bio.tools/genview> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0196,
+        edam:topic_0769,
+        edam:topic_0797,
+        edam:topic_3299 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAB855>,
+        "pubmed:34951622" ;
+    sc:description "A gene-centric, phylogeny-based comparative genomics pipeline for bacterial genomes and plasmids." ;
+    sc:featureList edam:operation_0525,
+        edam:operation_3431 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "GEnView" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/EbmeyerSt/GEnView" .
+
 <https://bio.tools/genvisage> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0749,
@@ -219690,7 +222164,7 @@ Genvisage - Rapid Identification of Discriminative Feature Pairs for Genomic Ana
     sc:url "http://genvisage.knoweng.org:443/" .
 
 <https://bio.tools/genvision> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0622 ;
     sc:citation <https://doi.org/10.1186/1751-0473-2-1> ;
@@ -219704,7 +222178,7 @@ Genvisage - Rapid Identification of Discriminative Feature Pairs for Genomic Ana
     biotools:primaryContact "Contact Form" .
 
 <https://bio.tools/genvisr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0622 ;
@@ -219724,7 +222198,7 @@ Genvisage - Rapid Identification of Discriminative Feature Pairs for Genomic Ana
     biotools:primaryContact <http://orcid.org/0000-0003-1928-7139> .
 
 <https://bio.tools/geo-measures> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0176,
@@ -219743,7 +222217,7 @@ The Geo Measures Plugin can carry out geometric analysis on protein structures.I
     sc:url "https://pymolwiki.org/index.php/Geo_Measures_Plugin" .
 
 <https://bio.tools/geo-platform-annotation-table-reader> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0203 ;
@@ -219760,7 +222234,7 @@ The Geo Measures Plugin can carry out geometric analysis on protein structures.I
     biotools:primaryContact "Sisi Ma" .
 
 <https://bio.tools/geoboost> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0218,
         edam:topic_0781,
@@ -219776,7 +222250,7 @@ The Geo Measures Plugin can carry out geometric analysis on protein structures.I
     biotools:primaryContact "Tasnia Tahsin" .
 
 <https://bio.tools/geoboost2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0218,
         edam:topic_0769,
@@ -219797,7 +222271,7 @@ GeoBoost2 (part of the ZoDo project) is a system for extracting the location of
     sc:url "https://zodo.asu.edu/geoboost2" .
 
 <https://bio.tools/geoboundaries> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_0769,
@@ -219819,8 +222293,28 @@ Create dynamic maps, analyze and build location-aware and geospatial application
     sc:name "geoBoundaries" ;
     sc:url "http://www.geoboundaries.org" .
 
+<https://bio.tools/geocancerprognosticdatasetsretriever> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0089,
+        edam:topic_0203,
+        edam:topic_2640,
+        edam:topic_3518 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAB852>,
+        "pubmed:34935889" ;
+    sc:description "Bioinformatics tool to easily identify cancer prognostic datasets on Gene Expression Omnibus (GEO)." ;
+    sc:featureList edam:operation_2421,
+        edam:operation_2422 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-2.0" ;
+    sc:name "geoCancerPrognosticDatasetsRetriever" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/AbbasAlameer/geoCancerPrognosticDatasetsRetriever" .
+
 <https://bio.tools/geodesicslicer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3063,
         edam:topic_3303,
         edam:topic_3384,
@@ -219836,7 +222330,7 @@ Create dynamic maps, analyze and build location-aware and geospatial application
     sc:url "http://www.slicer.org" .
 
 <https://bio.tools/geodis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3293,
@@ -219851,8 +222345,51 @@ Create dynamic maps, analyze and build location-aware and geospatial application
     sc:softwareHelp <http://darwin.uvigo.es/software/geodis.html> ;
     sc:url "http://darwin.uvigo.es/software/geodis.html" .
 
+<https://bio.tools/geoexplorer> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0634,
+        edam:topic_3382,
+        edam:topic_3518 ;
+    sc:citation <https://doi.org/10.1101/2021.10.06.459411> ;
+    sc:description "An R/Bioconductor package for gene expression analysis and visualisation." ;
+    sc:featureList edam:operation_0571,
+        edam:operation_2939,
+        edam:operation_3223,
+        edam:operation_3557 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "GEOexplorer" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <http://bioconductor.org/packages/release/bioc/manuals/GEOexplorer/man/GEOexplorer.pdf> ;
+    sc:url "http://bioconductor.org/packages/GEOexplorer/" .
+
+<https://bio.tools/geombd3> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0077,
+        edam:topic_0154,
+        edam:topic_0176,
+        edam:topic_0602,
+        edam:topic_3398 ;
+    sc:citation <https://doi.org/10.1021/ACS.JCIM.1C01387>,
+        "pmcid:PMC9308565",
+        "pubmed:35549473" ;
+    sc:description "GeomBD3 is a rigid body Brownian dynamics software package for simulating association rates and molecular recognition in biological or engineered systems." ;
+    sc:featureList edam:operation_2476,
+        edam:operation_3893,
+        edam:operation_3928 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "GeomBD3" ;
+    sc:operatingSystem "Linux" ;
+    sc:url "https://github.com/chang-group/GeomBD3" .
+
 <https://bio.tools/geometadb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3077,
@@ -219873,7 +222410,7 @@ Create dynamic maps, analyze and build location-aware and geospatial application
     biotools:primaryContact "Jack Zhu" .
 
 <https://bio.tools/geometree> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3293,
@@ -219889,7 +222426,7 @@ Create dynamic maps, analyze and build location-aware and geospatial application
     sc:url "http://www.cibiv.at/software/geometree/" .
 
 <https://bio.tools/geometric-gaussian-kernel-bolstered-error-estimation> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_3070,
@@ -219906,7 +222443,7 @@ Create dynamic maps, analyze and build location-aware and geospatial application
     biotools:primaryContact "Arsen Arakelyan" .
 
 <https://bio.tools/geometricus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0623,
@@ -219925,7 +222462,7 @@ Geometricus represents protein structures by shape-mers derived from 3D moment i
     sc:url "https://git.wur.nl/durai001/geometricus" .
 
 <https://bio.tools/geomine> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0128,
@@ -219940,7 +222477,7 @@ ProteinsPlus structure-based modeling support server. This server is a common we
     sc:url "https://proteins.plus" .
 
 <https://bio.tools/geonomics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0610,
@@ -219961,26 +222498,8 @@ ProteinsPlus structure-based modeling support server. This server is a common we
         "Windows" ;
     sc:url "https://github.com/drewhart/geonomics" .
 
-<https://bio.tools/geoportalgasolineras> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0108 ;
-    sc:citation <https://doi.org/10.1016/J.DIB.2019.104880>,
-        "pmcid:PMC6911964",
-        "pubmed:31853471" ;
-    sc:description """Panel data to investigate pricing behavior in the Spanish retail fuel market.
-
-Geoportal de precios de carburantes en las Estaciones de Servicio.
-
-{{header.title.saltarnavegacion : translate}}.
-
-{{header.seleccionidioma : translate}}.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'antitrust'""" ;
-    sc:featureList edam:operation_0371 ;
-    sc:name "geoportalgasolineras" ;
-    sc:url "http://geoportalgasolineras.es" .
-
 <https://bio.tools/geoppi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0154,
@@ -220003,7 +222522,7 @@ Geoportal de precios de carburantes en las Estaciones de Servicio.
         "Sen Song" .
 
 <https://bio.tools/geoquery> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -220023,7 +222542,7 @@ Geoportal de precios de carburantes en las Estaciones de Servicio.
     biotools:primaryContact "Sean Davis" .
 
 <https://bio.tools/george> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3172 ;
     sc:citation <https://doi.org/10.1021/acs.analchem.5b03628>,
@@ -220041,14 +222560,14 @@ Geoportal de precios de carburantes en las Estaciones de Servicio.
 
 <https://bio.tools/geosearch> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2299" ;
-            sc:name "Gene name" ;
-            sc:sameAs "http://edamontology.org/data_2299" ] ;
+            sc:additionalType "http://edamontology.org/data_2299" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Gene name" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2080" ;
-            sc:name "Database search results" ;
-            sc:sameAs "http://edamontology.org/data_2080" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2080" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Database search results" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -220071,7 +222590,7 @@ Geoportal de precios de carburantes en las Estaciones de Servicio.
     biotools:primaryContact "Zhicheng Ji" .
 
 <https://bio.tools/geoseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:citation "pubmed:20939882" ;
@@ -220086,7 +222605,7 @@ Geoportal de precios de carburantes en las Estaciones de Servicio.
     biotools:primaryContact "Anthony Cancio" .
 
 <https://bio.tools/geoss> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0203,
@@ -220100,7 +222619,7 @@ Geoportal de precios de carburantes en las Estaciones de Servicio.
     sc:url "http://va-genex.sourceforge.net/" .
 
 <https://bio.tools/geosubmission> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3518 ;
@@ -220118,7 +222637,7 @@ Geoportal de precios de carburantes en las Estaciones de Servicio.
     biotools:primaryContact "Alexandre Kuhn" .
 
 <https://bio.tools/gep2pep> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203 ;
     sc:description "Pathway Expression Profiles (PEPs) are based on the expression of pathways (defined as sets of genes) as opposed to individual genes. This package converts gene expression profiles to PEPs and performs enrichment analysis of both pathways and experimental conditions, such as \"drug set enrichment analysis\" and \"gene2drug\" drug discovery analysis respectively." ;
@@ -220137,14 +222656,12 @@ Geoportal de precios de carburantes en las Estaciones de Servicio.
 
 <https://bio.tools/gepard> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3497" ;
-            sc:name "DNA sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_3497" ] ;
+            sc:additionalType "http://edamontology.org/data_3497" ;
+            sc:name "DNA sequence (raw)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0862" ;
-            sc:name "Dotplot" ;
-            sc:sameAs "http://edamontology.org/data_0862" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0862" ;
+            sc:name "Dotplot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0797 ;
     sc:author "Jan Krumsiek" ;
@@ -220163,7 +222680,7 @@ Geoportal de precios de carburantes en las Estaciones de Servicio.
     sc:url "http://www.helmholtz-muenchen.de/icb/gepard" .
 
 <https://bio.tools/gepas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0769,
@@ -220183,7 +222700,7 @@ Geoportal de precios de carburantes en las Estaciones de Servicio.
     sc:url "http://www.gepas.org" .
 
 <https://bio.tools/gepat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0203 ;
     sc:citation <https://doi.org/10.1186/1471-2105-8-179> ;
@@ -220198,7 +222715,7 @@ Geoportal de precios de carburantes en las Estaciones de Servicio.
     sc:url "http://gepat.sourceforge.net/" .
 
 <https://bio.tools/gepia> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2640,
@@ -220214,8 +222731,29 @@ Geoportal de precios de carburantes en las Estaciones de Servicio.
     sc:softwareHelp <http://gepia.cancer-pku.cn/help.html> ;
     sc:url "http://gepia.cancer-pku.cn/" .
 
+<https://bio.tools/gepsdb> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0610,
+        edam:topic_0625,
+        edam:topic_3170,
+        edam:topic_3518 ;
+    sc:citation <https://doi.org/10.1002/TPG2.20163>,
+        "pubmed:34877793" ;
+    sc:description "The Gene Expression Database of Poplar under Stress." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_0315,
+        edam:operation_0571 ;
+    sc:isAccessibleForFree true ;
+    sc:name "GEPSdb" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://gepsdb.ahau-edu.cn/" .
+
 <https://bio.tools/gepsi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0769,
@@ -220236,7 +222774,7 @@ Geoportal de precios de carburantes en las Estaciones de Servicio.
     sc:url "https://github.com/clara-parabricks/GEPSi" .
 
 <https://bio.tools/geqtl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3053 ;
@@ -220251,14 +222789,13 @@ Geoportal de precios de carburantes en las Estaciones de Servicio.
 
 <https://bio.tools/germ-line_v_genes> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2835" ;
-            sc:name "Gene ID (VBASE2)" ;
-            sc:sameAs "http://edamontology.org/data_2835" ] ;
+            sc:additionalType "http://edamontology.org/data_2835" ;
+            sc:name "Gene ID (VBASE2)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0916" ;
-            sc:name "Gene report" ;
-            sc:sameAs "http://edamontology.org/data_0916" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0916" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Gene report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_2815,
@@ -220274,7 +222811,7 @@ Geoportal de precios de carburantes en las Estaciones de Servicio.
     sc:url "http://www.vbase2.org/" .
 
 <https://bio.tools/germline> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0625,
@@ -220289,7 +222826,7 @@ Geoportal de precios de carburantes en las Estaciones de Servicio.
     sc:url "http://www1.cs.columbia.edu/~gusev/germline/" .
 
 <https://bio.tools/germlinefilter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_3263 ;
@@ -220303,30 +222840,26 @@ Geoportal de precios de carburantes en las Estaciones de Servicio.
 
 <https://bio.tools/germonline> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1026" ;
-            sc:name "Gene symbol" ;
-            sc:sameAs "http://edamontology.org/data_1026" ],
+            sc:additionalType "http://edamontology.org/data_1045" ;
+            sc:name "Species name" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1045" ;
-            sc:name "Species name" ;
-            sc:sameAs "http://edamontology.org/data_1045" ],
+            sc:additionalType "http://edamontology.org/data_1026" ;
+            sc:name "Gene symbol" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1045" ;
-            sc:name "Species name" ;
-            sc:sameAs "http://edamontology.org/data_1045" ],
+            sc:additionalType "http://edamontology.org/data_1045" ;
+            sc:name "Species name" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1033" ;
-            sc:name "Ensembl gene ID" ;
-            sc:sameAs "http://edamontology.org/data_1033" ] ;
+            sc:additionalType "http://edamontology.org/data_1033" ;
+            sc:name "Ensembl gene ID" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0916" ;
-            sc:name "Gene report" ;
-            sc:sameAs "http://edamontology.org/data_0916" ],
+            sc:additionalType "http://edamontology.org/data_0916" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Gene report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0916" ;
-            sc:name "Gene report" ;
-            sc:sameAs "http://edamontology.org/data_0916" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0916" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Gene report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0623 ;
     sc:citation <https://doi.org/10.1093/database/baq030> ;
@@ -220340,7 +222873,7 @@ Geoportal de precios de carburantes en las Estaciones de Servicio.
     sc:url "http://www.germonline.org/" .
 
 <https://bio.tools/gerp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654,
@@ -220355,7 +222888,7 @@ Geoportal de precios de carburantes en las Estaciones de Servicio.
     sc:url "http://mendel.stanford.edu/sidowlab/downloads/gerp/index.html" .
 
 <https://bio.tools/gesbap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_1775,
@@ -220371,10 +222904,10 @@ Geoportal de precios de carburantes en las Estaciones de Servicio.
 
 <https://bio.tools/geseq> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_3293,
@@ -220397,7 +222930,7 @@ Geoportal de precios de carburantes en las Estaciones de Servicio.
         "Stephan Greiner" .
 
 <https://bio.tools/gespa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0634,
@@ -220418,18 +222951,18 @@ Geoportal de precios de carburantes en las Estaciones de Servicio.
 
 <https://bio.tools/gesper> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Gene expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ] ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Gene expression data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ],
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Plot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1772" ;
-            sc:name "Score" ;
-            sc:sameAs "http://edamontology.org/data_1772" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1772" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Score" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2269,
@@ -220449,7 +222982,7 @@ Geoportal de precios de carburantes en las Estaciones de Servicio.
     biotools:primaryContact "Fabian Schmich" .
 
 <https://bio.tools/gess> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0099,
@@ -220467,7 +223000,7 @@ Geoportal de precios de carburantes en las Estaciones de Servicio.
         "Zhenqing Ye" .
 
 <https://bio.tools/gess-db> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0077,
@@ -220486,8 +223019,27 @@ If you used GESS for scientific publication, we would appreciate citations to th
     sc:name "GESS-db" ;
     sc:url "https://wan-bioinfo.shinyapps.io/GESS/" .
 
+<https://bio.tools/gess_v2> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_0154,
+        edam:topic_3168 ;
+    sc:citation <https://doi.org/10.3389/FMED.2022.813964>,
+        "pmcid:PMC9037956",
+        "pubmed:35479940" ;
+    sc:description "Advanced Functions Embedded in the Second Version of Database, Global Evaluation of SARS-CoV-2/hCoV-19 Sequences 2." ;
+    sc:featureList edam:operation_0224,
+        edam:operation_3227 ;
+    sc:isAccessibleForFree true ;
+    sc:name "GESS v2" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://shiny.ph.iu.edu/GESS_v2/" .
+
 <https://bio.tools/getallele> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3170,
@@ -220509,7 +223061,7 @@ Repository with the toolbox (and code used for analysis and to produce figures)
     sc:url "https://github.com/SlowinskiPiotr/GeTallele" .
 
 <https://bio.tools/getbeltvelocity> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3318,
@@ -220525,7 +223077,7 @@ Repository with the toolbox (and code used for analysis and to produce figures)
     biotools:primaryContact "Steffen Willwacher" .
 
 <https://bio.tools/getcontacts> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
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@@ -220794,50 +223346,50 @@ The molecular functions of proteins (e.g. ligand-binding) are governed by networ
 
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-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Image" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0622 ;
     sc:citation <https://doi.org/10.1093/nar/gkw343>,
@@ -220855,34 +223407,34 @@ The molecular functions of proteins (e.g. ligand-binding) are governed by networ
 
 <https://bio.tools/getexons> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2306" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2305" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_3003" ;
+            sc:name "Annotation track" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1975" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ] ;
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
+            sc:name "Sequence trace" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1975" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1093/nar/gkw343>,
@@ -220900,58 +223452,58 @@ The molecular functions of proteins (e.g. ligand-binding) are governed by networ
 
 <https://bio.tools/getflanking> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1975" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2305" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ],
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_3003" ;
+            sc:name "Annotation track" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_3003" ;
+            sc:name "Annotation track" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2306" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ],
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
+            sc:name "Sequence trace" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
+            sc:name "Sequence trace" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1975" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2306" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2305" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1975" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0160 ;
     sc:citation <https://doi.org/10.1093/nar/gkw343>,
@@ -220968,7 +223520,7 @@ The molecular functions of proteins (e.g. ligand-binding) are governed by networ
     biotools:primaryContact "Galaxy Support Team" .
 
 <https://bio.tools/gethgvbase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:description "Extraction of single nucleotide polymorphism data from HGVBASE" ;
     sc:isAccessibleForFree true ;
@@ -220982,34 +223534,34 @@ The molecular functions of proteins (e.g. ligand-binding) are governed by networ
 
 <https://bio.tools/getintrons> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_3003" ;
+            sc:name "Annotation track" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2305" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
+            sc:name "Sequence trace" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1975" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2306" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1975" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3512 ;
     sc:citation <https://doi.org/10.1093/nar/gkw343>,
@@ -221027,26 +223579,26 @@ The molecular functions of proteins (e.g. ligand-binding) are governed by networ
 
 <https://bio.tools/getletterdistribution1> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ],
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Image" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Image" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1093/nar/gkw343>,
@@ -221065,34 +223617,34 @@ The molecular functions of proteins (e.g. ligand-binding) are governed by networ
 
 <https://bio.tools/getnumber> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2305" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_3003" ;
+            sc:name "Annotation track" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
+            sc:name "Sequence trace" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1975" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2306" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Image" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3321,
@@ -221112,14 +223664,12 @@ The molecular functions of proteins (e.g. ligand-binding) are governed by networ
 
 <https://bio.tools/getorf> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2887" ;
-            sc:name "Nucleic acid sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2887" ] ;
+            sc:additionalType "http://edamontology.org/data_2887" ;
+            sc:name "Nucleic acid sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2886" ;
-            sc:name "Protein sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2886" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2886" ;
+            sc:name "Protein sequence record" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3321 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -221150,7 +223700,7 @@ The molecular functions of proteins (e.g. ligand-binding) are governed by networ
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/getorf.html" .
 
 <https://bio.tools/getorganelle> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0196,
@@ -221175,18 +223725,18 @@ This toolkit assemblies organelle genome from genomic skimming data.""" ;
 
 <https://bio.tools/getreaddistribution> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0102 ;
@@ -221205,14 +223755,14 @@ This toolkit assemblies organelle genome from genomic skimming data.""" ;
 
 <https://bio.tools/getsequence> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:citation <https://doi.org/10.1093/nar/gkw343>,
@@ -221228,48 +223778,69 @@ This toolkit assemblies organelle genome from genomic skimming data.""" ;
     sc:url "https://urgi.versailles.inra.fr/Tools/REPET" ;
     biotools:primaryContact "Galaxy Support Team" .
 
+<https://bio.tools/getsequenceinfo> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0196,
+        edam:topic_0654,
+        edam:topic_3512,
+        edam:topic_3673 ;
+    sc:citation <https://doi.org/10.1186/S12859-022-04809-5>,
+        "pmcid:PMC9264741",
+        "pubmed:35804320" ;
+    sc:description "getSequenceInfo tool allows to extract sequence data and specific information from GenBank (Galaxy Version 1.0.1)" ;
+    sc:featureList edam:operation_0310,
+        edam:operation_2422,
+        edam:operation_3431 ;
+    sc:isAccessibleForFree true ;
+    sc:name "getSequenceInfo" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://sasc3i.univ-ag.fr:8080" .
+
 <https://bio.tools/getsizes> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2305" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
+            sc:name "Sequence trace" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1975" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2306" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_3003" ;
+            sc:name "Annotation track" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2305" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Image" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0622 ;
     sc:citation <https://doi.org/10.1093/nar/gkw343>,
@@ -221286,7 +223857,7 @@ This toolkit assemblies organelle genome from genomic skimming data.""" ;
     biotools:primaryContact "Galaxy Support Team" .
 
 <https://bio.tools/getutr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0099,
@@ -221302,18 +223873,18 @@ This toolkit assemblies organelle genome from genomic skimming data.""" ;
 
 <https://bio.tools/getwigdata> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1975" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_3005" ;
+            sc:name "Annotation track" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1975" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0622 ;
     sc:citation <https://doi.org/10.1093/nar/gkw343>,
@@ -221331,18 +223902,18 @@ This toolkit assemblies organelle genome from genomic skimming data.""" ;
 
 <https://bio.tools/getwigdistance> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_3005" ;
+            sc:name "Annotation track" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1975" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Image" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0622 ;
     sc:citation <https://doi.org/10.1093/nar/gkw343>,
@@ -221360,30 +223931,30 @@ This toolkit assemblies organelle genome from genomic skimming data.""" ;
 
 <https://bio.tools/getwigprofile> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1975" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ],
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_3003" ;
+            sc:name "Annotation track" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2305" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_3005" ;
+            sc:name "Annotation track" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Image" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0622 ;
     sc:citation <https://doi.org/10.1093/nar/gkw343>,
@@ -221399,8 +223970,26 @@ This toolkit assemblies organelle genome from genomic skimming data.""" ;
     sc:url "https://urgi.versailles.inra.fr/Tools/REPET" ;
     biotools:primaryContact "Galaxy Support Team" .
 
+<https://bio.tools/geva> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_3308,
+        edam:topic_3372,
+        edam:topic_3678 ;
+    sc:citation <https://doi.org/10.1016/J.JBI.2022.104053>,
+        "pubmed:35318148" ;
+    sc:description "A R package to evaluate variations in differential expression in multiple biological conditions." ;
+    sc:featureList edam:operation_0313,
+        edam:operation_2238,
+        edam:operation_3223 ;
+    sc:name "GEVA" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/sbcblab/geva" .
+
 <https://bio.tools/gewist> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2885 ;
@@ -221419,7 +224008,7 @@ This toolkit assemblies organelle genome from genomic skimming data.""" ;
     biotools:primaryContact "Wei Q. Deng" .
 
 <https://bio.tools/gexplora> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -221438,7 +224027,7 @@ plotting the density of genetic elements along a chromosome using GTF files (ide
     sc:url "https://github.com/nthomasCUBE/Gexplora" .
 
 <https://bio.tools/gfakluge> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0196 ;
@@ -221453,8 +224042,28 @@ plotting the density of genetic elements along a chromosome using GTF files (ide
     sc:name "gfakluge" ;
     sc:url "https://github.com/edawson/gfakluge" .
 
+<https://bio.tools/gfap> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Desktop application" ;
+    sc:applicationSubCategory edam:topic_0089,
+        edam:topic_0203,
+        edam:topic_0623,
+        edam:topic_0780 ;
+    sc:citation <https://doi.org/10.1101/2022.01.05.475154> ;
+    sc:description "Ultra-fast and accurate gene functional annotation software for plants." ;
+    sc:featureList edam:operation_0292,
+        edam:operation_2421,
+        edam:operation_3672 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Apache-2.0" ;
+    sc:name "GFAP" ;
+    sc:operatingSystem "Windows" ;
+    sc:softwareVersion "2.0" ;
+    sc:url "https://gitee.com/simon198912167815/gfap-database" .
+
 <https://bio.tools/gfapy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -221473,7 +224082,7 @@ plotting the density of genetic elements along a chromosome using GTF files (ide
     biotools:primaryContact "Giorgio Gonnella" .
 
 <https://bio.tools/gfasparse> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3336,
@@ -221490,28 +224099,40 @@ plotting the density of genetic elements along a chromosome using GTF files (ide
     biotools:primaryContact "Eemeli Leppäaho",
         "Suleiman Ali Khan" .
 
+<https://bio.tools/gfastats> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:name "Nucleic acid sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:description "gfastats is a single fast and exhaustive tool for summary statistics and simultaneous genome assembly file manipulation. gfastats also allows seamless fasta/fastq/gfa conversion." ;
+    sc:featureList edam:operation_2409 ;
+    sc:license "MIT" ;
+    sc:name "gfastats" ;
+    sc:softwareVersion "1.1" ;
+    sc:url "https://github.com/vgl-hub/gfastats" .
+
 <https://bio.tools/gfbio> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3736" ;
-            sc:name "Ecological data" ;
-            sc:sameAs "http://edamontology.org/data_3736" ],
+            sc:additionalType "http://edamontology.org/data_2975" ;
+            sc:encodingFormat "http://edamontology.org/format_2545" ;
+            sc:name "Nucleic acid sequence (raw)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2353" ;
-            sc:name "Ontology data" ;
-            sc:sameAs "http://edamontology.org/data_2353" ],
+            sc:additionalType "http://edamontology.org/data_2353" ;
+            sc:encodingFormat "http://edamontology.org/format_2376" ;
+            sc:name "Ontology data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2975" ;
-            sc:name "Nucleic acid sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_2975" ] ;
+            sc:additionalType "http://edamontology.org/data_3736" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Ecological data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2091" ;
-            sc:name "Accession" ;
-            sc:sameAs "http://edamontology.org/data_2091" ],
+            sc:additionalType "http://edamontology.org/data_1188" ;
+            sc:name "DOI" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1188" ;
-            sc:name "DOI" ;
-            sc:sameAs "http://edamontology.org/data_1188" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2091" ;
+            sc:name "Accession" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API",
         "Web application",
         "Web service" ;
@@ -221535,7 +224156,7 @@ plotting the density of genetic elements along a chromosome using GTF files (ide
     sc:url "https://www.gfbio.org" .
 
 <https://bio.tools/gfd-net> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0602,
@@ -221550,8 +224171,25 @@ plotting the density of genetic elements along a chromosome using GTF files (ide
     sc:softwareHelp <http://juanjodiaz.github.io/gfdnet/> ;
     sc:url "http://juanjodiaz.github.io/gfdnet/" .
 
+<https://bio.tools/gfdx> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3390,
+        edam:topic_3418,
+        edam:topic_3420 ;
+    sc:citation <https://doi.org/10.7189/JOGH.11.18002>,
+        "pmcid:PMC8501472",
+        "pubmed:34671465" ;
+    sc:description "An analysis and visualization tool for data on food fortification" ;
+    sc:isAccessibleForFree true ;
+    sc:name "GFDx" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://fortificationdata.org" .
+
 <https://bio.tools/gff-ex> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0160,
@@ -221568,7 +224206,7 @@ plotting the density of genetic elements along a chromosome using GTF files (ide
     biotools:primaryContact "Dinesh Gupta" .
 
 <https://bio.tools/gff2aplot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:author "Josep Abril" ;
@@ -221589,10 +224227,10 @@ plotting the density of genetic elements along a chromosome using GTF files (ide
 
 <https://bio.tools/gff2ps> a sc:SoftwareApplication ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:encodingFormat "http://edamontology.org/format_3696" ;
+            sc:name "Sequence features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0077 ;
     sc:author "Josep Abril" ;
@@ -221609,8 +224247,25 @@ plotting the density of genetic elements along a chromosome using GTF files (ide
     sc:url "http://big.crg.cat/services/gff2ps" ;
     biotools:primaryContact "Josep Abril" .
 
+<https://bio.tools/gff3_rebase> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_0976" ;
+            sc:name "Identifier (by type of data)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:citation <https://doi.org/10.1093/bioinformatics/btp163> ;
+    sc:description "A tool for filling the gap created by genomic data processing/analysis by rebasing some analysis results against the parent features which were originally analysed." ;
+    sc:featureList edam:operation_0335,
+        edam:operation_2409 ;
+    sc:isAccessibleForFree true ;
+    sc:name "GFF3 Rebase" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://toolshed.g2.bx.psu.edu/view/iuc/gff3_rebase" .
+
 <https://bio.tools/gffcompare> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0080 ;
@@ -221624,7 +224279,7 @@ plotting the density of genetic elements along a chromosome using GTF files (ide
     sc:url "https://ccb.jhu.edu/software/stringtie/gff.shtml" .
 
 <https://bio.tools/gffread> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0080 ;
@@ -221638,7 +224293,7 @@ plotting the density of genetic elements along a chromosome using GTF files (ide
     sc:url "https://ccb.jhu.edu/software/stringtie/gff.shtml" .
 
 <https://bio.tools/gffutils> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0080 ;
@@ -221652,8 +224307,31 @@ plotting the density of genetic elements along a chromosome using GTF files (ide
     sc:softwareHelp <https://daler.github.io/gffutils/> ;
     sc:url "https://pythonhosted.org/gffutils/" .
 
+<https://bio.tools/gficlee> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0602,
+        edam:topic_0637,
+        edam:topic_2229,
+        edam:topic_3053,
+        edam:topic_3293 ;
+    sc:citation <https://doi.org/10.1186/S12864-021-08070-7>,
+        "pmcid:PMC8557005",
+        "pubmed:34715785" ;
+    sc:description "GFICLEE is a program for predicting the new members in biological pathway or biological complex." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_0323,
+        edam:operation_3928 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "GFICLEE" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/yangfangs/GFICLEE1.0" .
+
 <https://bio.tools/gfinder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0622 ;
     sc:citation "pubmed:15215397",
@@ -221664,7 +224342,7 @@ plotting the density of genetic elements along a chromosome using GTF files (ide
     sc:url "http://www.medinfopoli.polimi.it/GFINDer/" .
 
 <https://bio.tools/gfkb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0637,
         edam:topic_3174,
@@ -221680,7 +224358,7 @@ plotting the density of genetic elements along a chromosome using GTF files (ide
     sc:url "https://hive.biochemistry.gwu.edu/gfkb" .
 
 <https://bio.tools/gflasso> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0634,
@@ -221696,8 +224374,25 @@ plotting the density of genetic elements along a chromosome using GTF files (ide
     sc:softwareHelp <http://www.sailing.cs.cmu.edu/main/?page_id=462> ;
     sc:url "http://www.sailing.cs.cmu.edu/main/?page_id=462" .
 
+<https://bio.tools/gfnet> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_3384,
+        edam:topic_3452,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1016/J.PATCOG.2022.108963>,
+        "pmcid:PMC9359771",
+        "pubmed:35966970" ;
+    sc:description "Automatic segmentation of COVID-19 lung infection regions using CT images based on boundary features." ;
+    sc:featureList edam:operation_0479,
+        edam:operation_1812,
+        edam:operation_3925 ;
+    sc:license "Not licensed" ;
+    sc:name "GFNet" ;
+    sc:url "https://github.com/zengzhenhuan/GFNet" .
+
 <https://bio.tools/gfs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -221717,7 +224412,7 @@ plotting the density of genetic elements along a chromosome using GTF files (ide
     biotools:primaryContact "Viral bioinformatics resource center" .
 
 <https://bio.tools/gfsat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
@@ -221735,7 +224430,7 @@ plotting the density of genetic elements along a chromosome using GTF files (ide
     sc:url "http://118.178.236.158/GFSAT/index.php" .
 
 <https://bio.tools/gganatogram> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0621,
@@ -221755,8 +224450,30 @@ plotting the density of genetic elements along a chromosome using GTF files (ide
     sc:url "https://github.com/jespermaag/gganatogram" ;
     biotools:primaryContact "Jesper Maag" .
 
+<https://bio.tools/ggatlda> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workbench" ;
+    sc:applicationSubCategory edam:topic_0602,
+        edam:topic_0634,
+        edam:topic_0659,
+        edam:topic_2640,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1186/S12859-021-04548-Z>,
+        "pmcid:PMC8729153",
+        "pubmed:34983363" ;
+    sc:description "LncRNA-disease association prediction method based on graph-level graph attention network" ;
+    sc:featureList edam:operation_0303,
+        edam:operation_0463,
+        edam:operation_3927 ;
+    sc:isAccessibleForFree true ;
+    sc:name "gGATLDA" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/LiWangG/gGATLDA" .
+
 <https://bio.tools/ggb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_2259,
         edam:topic_3070,
@@ -221774,7 +224491,7 @@ plotting the density of genetic elements along a chromosome using GTF files (ide
     sc:url "http://gaggle.systemsbiology.net/docs/geese/genomebrowser/" .
 
 <https://bio.tools/ggbase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -221793,7 +224510,7 @@ plotting the density of genetic elements along a chromosome using GTF files (ide
     biotools:primaryContact "VJ Carey" .
 
 <https://bio.tools/ggbio> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -221814,7 +224531,7 @@ plotting the density of genetic elements along a chromosome using GTF files (ide
     biotools:primaryContact "Michael Lawrence" .
 
 <https://bio.tools/ggcyto> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -221833,7 +224550,7 @@ plotting the density of genetic elements along a chromosome using GTF files (ide
     biotools:primaryContact "Mike Jiang" .
 
 <https://bio.tools/ggd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3077,
@@ -221850,7 +224567,7 @@ plotting the density of genetic elements along a chromosome using GTF files (ide
     biotools:primaryContact <https://orcid.org/0000-0003-1756-0859> .
 
 <https://bio.tools/ggd-lasso> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0102,
@@ -221867,8 +224584,31 @@ plotting the density of genetic elements along a chromosome using GTF files (ide
     sc:url "http://www.cs.unc.edu/~weicheng/" ;
     biotools:primaryContact "Wei Cheng" .
 
+<https://bio.tools/ggdb> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_0196,
+        edam:topic_0780,
+        edam:topic_3053,
+        edam:topic_3293 ;
+    sc:citation <https://doi.org/10.1093/plphys/kiac297>,
+        "pmcid:PMC9434254",
+        "pubmed:35789395" ;
+    sc:description "A Grameneae Genome Alignment Database of Homologous Genes Hierarchically Related to Evolutionary Events." ;
+    sc:featureList edam:operation_0553,
+        edam:operation_3182,
+        edam:operation_3216 ;
+    sc:isAccessibleForFree true ;
+    sc:name "GGDB" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://www.grassgenome.com/" .
+
 <https://bio.tools/ggea> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -221885,8 +224625,39 @@ plotting the density of genetic elements along a chromosome using GTF files (ide
     sc:softwareHelp <http://www.bioconductor.org/packages/release/bioc/manuals/EnrichmentBrowser/man/EnrichmentBrowser.pdf> ;
     sc:url "https://drupal.bio.ifi.lmu.de/en/GGEA/index.html" .
 
+<https://bio.tools/ggip> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_0883" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Structure" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0091,
+        edam:topic_0128,
+        edam:topic_0154,
+        edam:topic_0820,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.3389/FENDO.2022.825195>,
+        "pmcid:PMC8989088",
+        "pubmed:35399947" ;
+    sc:description "A Web Server for GPCR-GPCR Interaction Pair Prediction." ;
+    sc:featureList edam:operation_0269,
+        edam:operation_0474,
+        edam:operation_2492,
+        edam:operation_2995 ;
+    sc:isAccessibleForFree true ;
+    sc:name "GGIP" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://protein.b.dendai.ac.jp/GGIP/" .
+
 <https://bio.tools/ggmix> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0625,
@@ -221908,16 +224679,41 @@ Variable Selection in Linear Mixed Models for SNP Data.""" ;
     sc:name "ggmix" ;
     sc:url "https://cran.r-project.org/package=ggmix" .
 
+<https://bio.tools/ggmsa> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0081,
+        edam:topic_0084,
+        edam:topic_0102,
+        edam:topic_0659,
+        edam:topic_3168 ;
+    sc:citation <https://doi.org/10.1093/BIB/BBAC222>,
+        "pubmed:35671504" ;
+    sc:description "A visual exploration tool for multiple sequence alignment and associated data. Supports MSA of DNA, RNA, and protein sequences using 'ggplot2'. Multiple sequence alignment can easily be combined with other 'ggplot2' plots, such as phylogenetic tree Visualized by 'ggtree', boxplot, genome map and so on." ;
+    sc:featureList edam:operation_0451,
+        edam:operation_0492,
+        edam:operation_0564,
+        edam:operation_0567,
+        edam:operation_0570 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Artistic-2.0" ;
+    sc:name "ggmsa" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://bioconductor.org/packages/release/bioc/manuals/ggmsa/man/ggmsa.pdf> ;
+    sc:url "http://yulab-smu.top/ggmsa/" .
+
 <https://bio.tools/ggost> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0842" ;
-            sc:name "Identifier" ;
-            sc:sameAs "http://edamontology.org/data_0842" ] ;
+            sc:additionalType "http://edamontology.org/data_0842" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Identifier" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1176" ;
-            sc:name "GO concept ID" ;
-            sc:sameAs "http://edamontology.org/data_1176" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1176" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "GO concept ID" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0089,
@@ -221949,7 +224745,7 @@ Variable Selection in Linear Mixed Models for SNP Data.""" ;
         "Jüri Reimand" .
 
 <https://bio.tools/ggplot2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0092 ;
     sc:citation <https://doi.org/10.1007/978-3-319-24277-4> ;
@@ -221962,8 +224758,26 @@ Variable Selection in Linear Mixed Models for SNP Data.""" ;
     sc:softwareHelp <http://ggplot2.tidyverse.org/reference/> ;
     sc:url "http://ggplot2.org/" .
 
+<https://bio.tools/ggpubfigs> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_3070 ;
+    sc:citation <https://doi.org/10.1128/MRA.00871-21>,
+        "pmcid:PMC8567791",
+        "pubmed:34734767" ;
+    sc:description "colorblind friendly color palettes and ggplot2 graphic system extensions for publication-quality scientific figures" ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3799 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Other" ;
+    sc:name "ggpubfigs" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/JLSteenwyk/ggpubfigs" .
+
 <https://bio.tools/ggrna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0203,
@@ -221985,7 +224799,7 @@ Variable Selection in Linear Mixed Models for SNP Data.""" ;
     biotools:primaryContact "Hidemasa Bono" .
 
 <https://bio.tools/ggroups> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3053,
@@ -222006,14 +224820,14 @@ Calculates additive and dominance genetic relationship matrices and their invers
 
 <https://bio.tools/ggsashimi> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Sequence alignment" ] ;
     bsc:output [ a bsct:FormalParameter ;
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-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3591" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_3170,
@@ -222035,7 +224849,7 @@ Calculates additive and dominance genetic relationship matrices and their invers
     sc:url "https://github.com/guigolab/ggsashimi" .
 
 <https://bio.tools/ggseqlogo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0080,
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@@ -222052,7 +224866,7 @@ Calculates additive and dominance genetic relationship matrices and their invers
     biotools:primaryContact "Omar Wagih" .
 
 <https://bio.tools/ggtools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -222075,18 +224889,18 @@ Calculates additive and dominance genetic relationship matrices and their invers
 
 <https://bio.tools/ggtree> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0872" ;
-            sc:name "Phylogenetic tree" ;
-            sc:sameAs "http://edamontology.org/data_0872" ] ;
+            sc:additionalType "http://edamontology.org/data_0872" ;
+            sc:encodingFormat "http://edamontology.org/format_1910" ;
+            sc:name "Phylogenetic tree" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0872" ;
-            sc:name "Phylogenetic tree" ;
-            sc:sameAs "http://edamontology.org/data_0872" ],
+            sc:additionalType "http://edamontology.org/data_0872" ;
+            sc:encodingFormat "http://edamontology.org/format_2006" ;
+            sc:name "Phylogenetic tree" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1707" ;
-            sc:name "Phylogenetic tree image" ;
-            sc:sameAs "http://edamontology.org/data_1707" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1707" ;
+            sc:encodingFormat "http://edamontology.org/format_2006" ;
+            sc:name "Phylogenetic tree image" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0084,
@@ -222106,7 +224920,7 @@ Calculates additive and dominance genetic relationship matrices and their invers
     biotools:primaryContact "Guangchuang Yu" .
 
 <https://bio.tools/ggtreeextra> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0102,
@@ -222125,7 +224939,7 @@ plotting-tree-with-data-using-ggtreeExtra.""" ;
     sc:url "https://www.bioconductor.org/packages/ggtreeExtra" .
 
 <https://bio.tools/ggvd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0625,
@@ -222142,8 +224956,51 @@ plotting-tree-with-data-using-ggtreeExtra.""" ;
     sc:url "http://animal.nwsuaf.edu.cn/GoatVar" ;
     biotools:primaryContact "Yu Jiang" .
 
+<https://bio.tools/ggvenndiagram> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0092,
+        edam:topic_0769,
+        edam:topic_3382 ;
+    sc:citation <https://doi.org/10.3389/FGENE.2021.706907>,
+        "pmcid:PMC8452859",
+        "pubmed:34557218" ;
+    sc:description "An Intuitive, Easy-to-Use, and Highly Customizable R Package to Generate Venn Diagram." ;
+    sc:featureList edam:operation_0337 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "ggVennDiagram" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://cran.r-project.org/web/packages/ggVennDiagram/ggVennDiagram.pdf> ;
+    sc:url "https://cran.r-project.org/package=ggVennDiagram" .
+
+<https://bio.tools/ggvolcanor> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0080,
+        edam:topic_0121,
+        edam:topic_0602,
+        edam:topic_3308,
+        edam:topic_3360 ;
+    sc:citation <https://doi.org/10.1016/J.CSBJ.2021.10.020>,
+        "pmcid:PMC8551465",
+        "pubmed:34745458" ;
+    sc:description "A Shiny app for customizable visualization of differential expression datasets." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3223,
+        edam:operation_3695 ;
+    sc:isAccessibleForFree true ;
+    sc:name "ggVolcanoR" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://ggvolcanor.erc.monash.edu/" .
+
 <https://bio.tools/ghap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0080,
@@ -222160,7 +225017,7 @@ plotting-tree-with-data-using-ggtreeExtra.""" ;
     biotools:primaryContact "Yuri Tani Utsunomiya" .
 
 <https://bio.tools/ghat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0625,
@@ -222181,7 +225038,7 @@ Functions are provided for quantifying evolution and selection on complex traits
     sc:url "https://cran.r-project.org/package=Ghat" .
 
 <https://bio.tools/ghemical> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_2275 ;
     sc:description "Ghemical is a molecular modeling and editing package for GNOME. It integrates a molecular mechanics force field as well as integration with MOPAC and optionally the MPQC package for quantum mechanical calculations. It integrates Open Babel to import/export to a variety of external programs." ;
@@ -222193,7 +225050,7 @@ Functions are provided for quantifying evolution and selection on complex traits
     sc:url "http://www.bioinformatics.org/ghemical/ghemical/index.html" .
 
 <https://bio.tools/ghomr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3382,
@@ -222210,7 +225067,7 @@ Pytorch implementation for "GhoMR : Multi-Receptive Lightweight Residual Modules
     sc:url "https://github.com/iamarijit/GhoMR" .
 
 <https://bio.tools/ghost> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0602,
@@ -222227,20 +225084,38 @@ Pytorch implementation for "GhoMR : Multi-Receptive Lightweight Residual Modules
     sc:softwareHelp <https://github.com/Kingsford-Group/ghost2> ;
     sc:url "http://www.cs.cmu.edu/~ckingsf/software/ghost/index.html" .
 
+<https://bio.tools/ghostipy> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0769,
+        edam:topic_3168,
+        edam:topic_3316 ;
+    sc:citation <https://doi.org/10.1523/ENEURO.0202-21.2021>,
+        "pmcid:PMC8641918",
+        "pubmed:34556557" ;
+    sc:description "An efficient signal processing and spectral analysis toolbox for large data." ;
+    sc:featureList edam:operation_3214,
+        edam:operation_3695 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Apache-2.0" ;
+    sc:name "GhostiPy" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/kemerelab/ghostipy/" .
+
 <https://bio.tools/ghostkoala> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1872" ;
-            sc:name "Taxonomic classification" ;
-            sc:sameAs "http://edamontology.org/data_1872" ],
+            sc:additionalType "http://edamontology.org/data_1872" ;
+            sc:name "Taxonomic classification" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0916" ;
-            sc:name "Gene report" ;
-            sc:sameAs "http://edamontology.org/data_0916" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0916" ;
+            sc:name "Gene report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3174,
@@ -222258,10 +225133,9 @@ Pytorch implementation for "GhoMR : Multi-Receptive Lightweight Residual Modules
 
 <https://bio.tools/ghostz> a sc:SoftwareApplication ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0857" ;
-            sc:name "Sequence search results" ;
-            sc:sameAs "http://edamontology.org/data_0857" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0857" ;
+            sc:name "Sequence search results" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654,
@@ -222277,7 +225151,7 @@ Pytorch implementation for "GhoMR : Multi-Receptive Lightweight Residual Modules
     sc:url "http://www.bi.cs.titech.ac.jp/ghostz/" .
 
 <https://bio.tools/giana> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Workbench" ;
     sc:applicationSubCategory edam:topic_0605,
@@ -222300,7 +225174,7 @@ Pytorch implementation for "GhoMR : Multi-Receptive Lightweight Residual Modules
     sc:url "https://github.com/s175573/GIANA51" .
 
 <https://bio.tools/giani> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_2229,
@@ -222320,7 +225194,7 @@ General Image Analysis of Nuclei-containing Images.""" ;
     sc:url "http://djpbarry.github.io/Giani" .
 
 <https://bio.tools/giant> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0602,
@@ -222340,14 +225214,13 @@ General Image Analysis of Nuclei-containing Images.""" ;
 
 <https://bio.tools/giardiadb> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2295" ;
-            sc:name "Gene ID" ;
-            sc:sameAs "http://edamontology.org/data_2295" ] ;
+            sc:additionalType "http://edamontology.org/data_2295" ;
+            sc:name "Gene ID" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0916" ;
-            sc:name "Gene report" ;
-            sc:sameAs "http://edamontology.org/data_0916" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0916" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Gene report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0621 ;
     sc:citation <https://doi.org/10.1093/nar/gkn631>,
@@ -222363,7 +225236,7 @@ General Image Analysis of Nuclei-containing Images.""" ;
     sc:url "http://giardiadb.org/giardiadb/" .
 
 <https://bio.tools/gibbs-motif-sampler> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0654,
@@ -222382,7 +225255,7 @@ General Image Analysis of Nuclei-containing Images.""" ;
     biotools:primaryContact "Brad Ridder" .
 
 <https://bio.tools/gibbs_motif_sampler> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0166,
@@ -222411,7 +225284,7 @@ General Image Analysis of Nuclei-containing Images.""" ;
     biotools:primaryContact "Gibbs Motif Sampler Team" .
 
 <https://bio.tools/gibbscluster> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
@@ -222432,7 +225305,7 @@ General Image Analysis of Nuclei-containing Images.""" ;
     biotools:primaryContact "Morten Nielsen" .
 
 <https://bio.tools/gibbsthur> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2269 ;
@@ -222446,7 +225319,7 @@ Breeding evaluation and variance component estimation of ranking traits.""" ;
     sc:url "https://github.com/lvaronaunizar/Gibbsthur" .
 
 <https://bio.tools/gidetector> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654,
@@ -222464,7 +225337,7 @@ Breeding evaluation and variance component estimation of ranking traits.""" ;
     biotools:primaryContact "Dongsheng Che" .
 
 <https://bio.tools/gifi_array_analyzer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0654 ;
     sc:citation <https://doi.org/10.1089/1536231041388320> ;
@@ -222477,7 +225350,7 @@ Breeding evaluation and variance component estimation of ranking traits.""" ;
     sc:url "http://compbio.uthsc.edu/Gifi.php" .
 
 <https://bio.tools/gift> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0202,
         edam:topic_0602,
@@ -222493,7 +225366,7 @@ Breeding evaluation and variance component estimation of ranking traits.""" ;
     sc:url "http://bioinfo.au.tsinghua.edu.cn/software/GIFT/" .
 
 <https://bio.tools/giggle> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_1775,
@@ -222513,7 +225386,7 @@ Breeding evaluation and variance component estimation of ranking traits.""" ;
     sc:url "https://github.com/ryanlayer/giggle" .
 
 <https://bio.tools/gigi-check> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3053,
@@ -222528,7 +225401,7 @@ Breeding evaluation and variance component estimation of ranking traits.""" ;
     sc:url "https://faculty.washington.edu/wijsman/progdists/gigi/software/GIGI-Check/GIGI-Check.html" .
 
 <https://bio.tools/giira> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0099,
@@ -222544,8 +225417,27 @@ Breeding evaluation and variance component estimation of ranking traits.""" ;
     sc:softwareHelp <https://sourceforge.net/projects/giira/> ;
     sc:url "http://sourceforge.net/projects/giira/" .
 
+<https://bio.tools/gilda> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0089,
+        edam:topic_0154,
+        edam:topic_0634,
+        edam:topic_3047,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1101/2021.09.10.459803> ;
+    sc:description "Gilda is a Python package and REST service that grounds (i.e., finds appropriate identifiers in namespaces for) named entities in biomedical text." ;
+    sc:featureList edam:operation_3435 ;
+    sc:isAccessibleForFree true ;
+    sc:license "BSD-2-Clause" ;
+    sc:name "Gilda" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/indralab/gilda" .
+
 <https://bio.tools/gillespie-rna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0632,
@@ -222563,7 +225455,7 @@ Breeding evaluation and variance component estimation of ranking traits.""" ;
     sc:url "https://data.caltech.edu/records/1287" .
 
 <https://bio.tools/gillespie-stochastic-simulation-algorithm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0821,
         edam:topic_2259,
@@ -222581,7 +225473,7 @@ Breeding evaluation and variance component estimation of ranking traits.""" ;
     biotools:primaryContact "Nezar" .
 
 <https://bio.tools/gimica> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_2885,
@@ -222600,7 +225492,7 @@ Host Genetic & Immune Factors Shaping Human Microbita.""" ;
     sc:url "https://idrblab.org/gimica/" .
 
 <https://bio.tools/gimli> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0218,
         edam:topic_3474 ;
@@ -222619,7 +225511,7 @@ Host Genetic & Immune Factors Shaping Human Microbita.""" ;
     biotools:primaryContact "Support" .
 
 <https://bio.tools/gimmemotifs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_3169,
@@ -222635,7 +225527,7 @@ Host Genetic & Immune Factors Shaping Human Microbita.""" ;
     biotools:primaryContact "Simon Vanheeringen" .
 
 <https://bio.tools/gina> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0625,
@@ -222655,8 +225547,32 @@ Host Genetic & Immune Factors Shaping Human Microbita.""" ;
     sc:url "https://cran.r-project.org/web/packages/GiNA/index.html" ;
     biotools:primaryContact "Juan Zalapa" .
 
+<https://bio.tools/gincco> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0128,
+        edam:topic_0203,
+        edam:topic_0625,
+        edam:topic_2640,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAB830>,
+        "pmcid:PMC8826027",
+        "pubmed:34888618" ;
+    sc:description "Unsupervised construction of computational graphs for gene expression data with explicit structural inductive biases." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_2492,
+        edam:operation_3094,
+        edam:operation_3432 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "GINCCo" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/paulmorio/gincco" .
+
 <https://bio.tools/giniclust> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0637,
@@ -222673,7 +225589,7 @@ Host Genetic & Immune Factors Shaping Human Microbita.""" ;
     biotools:primaryContact "Guo-Cheng YuanEmail author" .
 
 <https://bio.tools/giniclust2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0625,
@@ -222691,7 +225607,7 @@ Host Genetic & Immune Factors Shaping Human Microbita.""" ;
     biotools:primaryContact "Daphne Tsoucas" .
 
 <https://bio.tools/giniqc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Script" ;
     sc:applicationSubCategory edam:topic_0091,
@@ -222708,7 +225624,7 @@ SUMMARY:Single-cell Hi-C (scHi-C) allows the study of cell-to-cell variability i
     sc:url "https://github.com/4dn-dcic/GiniQC" .
 
 <https://bio.tools/ginkgo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3053,
@@ -222725,7 +225641,7 @@ SUMMARY:Single-cell Hi-C (scHi-C) allows the study of cell-to-cell variability i
     sc:url "http://qb.cshl.edu/ginkgo" .
 
 <https://bio.tools/ginkgo_simulation> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654,
@@ -222740,7 +225656,7 @@ SUMMARY:Single-cell Hi-C (scHi-C) allows the study of cell-to-cell variability i
     sc:url "http://phylo.bio.ku.edu/ginkgo/index.html" .
 
 <https://bio.tools/ginpipe> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_0781,
@@ -222759,14 +225675,14 @@ SUMMARY:Single-cell Hi-C (scHi-C) allows the study of cell-to-cell variability i
 
 <https://bio.tools/ginsim> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ] ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:encodingFormat "http://edamontology.org/format_2585" ;
+            sc:name "Pathway or network" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:encodingFormat "http://edamontology.org/format_3604" ;
+            sc:name "Pathway or network" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0602,
@@ -222791,7 +225707,7 @@ SUMMARY:Single-cell Hi-C (scHi-C) allows the study of cell-to-cell variability i
     sc:url "http://ginsim.org/" .
 
 <https://bio.tools/giotto> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3170,
@@ -222817,7 +225733,7 @@ SUMMARY:Single-cell Hi-C (scHi-C) allows the study of cell-to-cell variability i
         "Ruben Dries" .
 
 <https://bio.tools/gip> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0634,
@@ -222839,8 +225755,23 @@ SUMMARY:Single-cell Hi-C (scHi-C) allows the study of cell-to-cell variability i
     sc:softwareHelp <https://gip.readthedocs.io/en/latest/> ;
     sc:url "https://cloud.sylabs.io/library/giovannibussotti/default/giptools" .
 
+<https://bio.tools/gippe-rpt> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0769,
+        edam:topic_3318,
+        edam:topic_3361 ;
+    sc:citation <https://doi.org/10.1016/J.APRADISO.2021.110041>,
+        "pubmed:34915347" ;
+    sc:description "Geant4 interface for particle physics experiments applied to Radioactive Particle Tracking." ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "GIPPE-RPT" ;
+    sc:operatingSystem "Linux" ;
+    sc:url "https://pimelab.github.io/GIPPE-RPT/index.html" .
+
 <https://bio.tools/gips> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0625,
@@ -222861,7 +225792,7 @@ SUMMARY:Single-cell Hi-C (scHi-C) allows the study of cell-to-cell variability i
         "Weitao Wang" .
 
 <https://bio.tools/girafe> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0622 ;
@@ -222881,7 +225812,7 @@ SUMMARY:Single-cell Hi-C (scHi-C) allows the study of cell-to-cell variability i
     biotools:primaryContact <http://orcid.org/0000-0003-1471-1295> .
 
 <https://bio.tools/girder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0607,
         edam:topic_2258,
@@ -222898,7 +225829,7 @@ SUMMARY:Single-cell Hi-C (scHi-C) allows the study of cell-to-cell variability i
     biotools:primaryContact "Girder" .
 
 <https://bio.tools/giremi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0099,
@@ -222913,7 +225844,7 @@ SUMMARY:Single-cell Hi-C (scHi-C) allows the study of cell-to-cell variability i
     sc:url "https://www.ibp.ucla.edu/research/xiao/GIREMI.html" .
 
 <https://bio.tools/gis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -222935,7 +225866,7 @@ SUMMARY:Single-cell Hi-C (scHi-C) allows the study of cell-to-cell variability i
     biotools:primaryContact "Aysam Guerler" .
 
 <https://bio.tools/gismo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -222949,7 +225880,7 @@ SUMMARY:Single-cell Hi-C (scHi-C) allows the study of cell-to-cell variability i
     sc:url "http://gismo.igs.umaryland.edu/" .
 
 <https://bio.tools/gispa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3517 ;
@@ -222969,7 +225900,7 @@ SUMMARY:Single-cell Hi-C (scHi-C) allows the study of cell-to-cell variability i
     biotools:primaryContact <http://orcid.org/0000-0002-9029-3737> .
 
 <https://bio.tools/gist> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654,
@@ -222984,7 +225915,7 @@ SUMMARY:Single-cell Hi-C (scHi-C) allows the study of cell-to-cell variability i
     biotools:primaryContact "Dongsheng Che" .
 
 <https://bio.tools/gist-gpu> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0123,
         edam:topic_0154,
         edam:topic_0166,
@@ -223002,7 +225933,7 @@ For a standard cpptraj installation, a shell script and a patch file has been su
     sc:url "https://github.com/liedllab/gigist" .
 
 <https://bio.tools/gitools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0622 ;
     sc:citation <https://doi.org/10.1371/journal.pone.0019541> ;
@@ -223018,7 +225949,7 @@ For a standard cpptraj installation, a shell script and a patch file has been su
     sc:url "http://www.gitools.org/" .
 
 <https://bio.tools/giv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0092,
@@ -223033,7 +225964,7 @@ For a standard cpptraj installation, a shell script and a patch file has been su
     biotools:primaryContact "Dongsheng Che" .
 
 <https://bio.tools/give> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0622,
@@ -223050,8 +225981,30 @@ For a standard cpptraj installation, a shell script and a patch file has been su
     sc:url "https://zhong-lab-ucsd.github.io/GIVE_homepage/" ;
     biotools:primaryContact "Sheng Zhong" .
 
+<https://bio.tools/gjls2> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0625,
+        edam:topic_0749,
+        edam:topic_2269,
+        edam:topic_3517 ;
+    sc:citation <https://doi.org/10.1093/g3journal/jkac049>,
+        "pmcid:PMC8982384",
+        "pubmed:35201341" ;
+    sc:description "An R package for generalized joint location and scale analysis in X-inclusive genome-wide association studies." ;
+    sc:featureList edam:operation_0484,
+        edam:operation_3435,
+        edam:operation_3799 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "gJLS2" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/WeiAkaneDeng/gJLS2" .
+
 <https://bio.tools/gk_arrays> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3174,
@@ -223071,7 +226024,7 @@ For a standard cpptraj installation, a shell script and a patch file has been su
     biotools:primaryContact "Vincent Lefort" .
 
 <https://bio.tools/glactools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3056 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btx749> ;
@@ -223083,7 +226036,7 @@ For a standard cpptraj installation, a shell script and a patch file has been su
     sc:url "https://grenaud.github.io/glactools/" .
 
 <https://bio.tools/glad> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -223102,7 +226055,7 @@ For a standard cpptraj installation, a shell script and a patch file has been su
     biotools:primaryContact "Philippe Hupe" .
 
 <https://bio.tools/glad_tumor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3053,
@@ -223118,7 +226071,7 @@ For a standard cpptraj installation, a shell script and a patch file has been su
     sc:url "http://genomics.wpi.edu/glad/" .
 
 <https://bio.tools/glamm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0602,
@@ -223139,7 +226092,7 @@ For a standard cpptraj installation, a shell script and a patch file has been su
         "Dylan Chivian" .
 
 <https://bio.tools/glamst> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0084,
@@ -223166,7 +226119,7 @@ GLaMST can be downloaded from https://github.com/xysheep/GLaMST/releases.""" ;
     sc:url "https://xysheep.github.io/GLaMST" .
 
 <https://bio.tools/glapd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0622,
@@ -223187,7 +226140,7 @@ This is a customizable LAMP primer sets designing system: GLAPD (whole genome ba
     sc:url "http://cgm.sjtu.edu.cn/GLAPD/" .
 
 <https://bio.tools/glass> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1101/gr.10.7.950> ;
@@ -223200,7 +226153,7 @@ This is a customizable LAMP primer sets designing system: GLAPD (whole genome ba
     sc:url "http://groups.csail.mit.edu/cb/crossspecies/" .
 
 <https://bio.tools/glassesviewer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3168,
@@ -223219,18 +226172,18 @@ This matlab utility can parse recording files from the Tobii Glasses 2 as stored
 
 <https://bio.tools/glassgo> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ] ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Nucleic acid sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1246" ;
-            sc:name "Sequence cluster (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1246" ],
+            sc:additionalType "http://edamontology.org/data_3028" ;
+            sc:encodingFormat "http://edamontology.org/format_3464" ;
+            sc:name "Taxonomy" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3028" ;
-            sc:name "Taxonomy" ;
-            sc:sameAs "http://edamontology.org/data_3028" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1246" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence cluster (nucleic acid)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0637,
         edam:topic_0659 ;
@@ -223245,8 +226198,26 @@ This matlab utility can parse recording files from the Tobii Glasses 2 as stored
     sc:softwareHelp <http://rna.informatik.uni-freiburg.de/Help.jsp?toolName=GLASSgo> ;
     sc:url "http://rna.informatik.uni-freiburg.de/GLASSgo/Input.jsp" .
 
+<https://bio.tools/glaucomanet> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_3303,
+        edam:topic_3379,
+        edam:topic_3382,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1038/S41598-022-17753-4>,
+        "pmcid:PMC9388536",
+        "pubmed:35982106" ;
+    sc:description "A deep-learning algorithm for the diagnosis of primary open-angle glaucoma from fundus photographs." ;
+    sc:featureList edam:operation_3443,
+        edam:operation_3553,
+        edam:operation_3927 ;
+    sc:license "BSD-3-Clause" ;
+    sc:name "GlaucomaNet" ;
+    sc:url "https://github.com/bionlplab/GlaucomaNet" .
+
 <https://bio.tools/gleaner> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3169,
@@ -223268,7 +226239,7 @@ This matlab utility can parse recording files from the Tobii Glasses 2 as stored
     sc:url "http://compbio-zhanglab.org/GLEANER" .
 
 <https://bio.tools/glide> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0621,
@@ -223287,8 +226258,25 @@ MOTIVATION:One of the core problems in the analysis of biological networks is th
     sc:name "GLIDE" ;
     sc:url "https://bitbucket.org/kap_devkota/glide" .
 
+<https://bio.tools/glider> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workbench" ;
+    sc:applicationSubCategory edam:topic_0128,
+        edam:topic_0634,
+        edam:topic_3517 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC322>,
+        "pmcid:PMC9237677",
+        "pubmed:35575379" ;
+    sc:description "GLIDER, a method that replaces a protein-protein interaction or association network with a new graph-based similarity network." ;
+    sc:featureList edam:operation_2492,
+        edam:operation_3501,
+        edam:operation_3927 ;
+    sc:license "Not licensed" ;
+    sc:name "GLIDER" ;
+    sc:url "https://github.com/kap-devkota/GLIDER" .
+
 <https://bio.tools/glimma> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -223307,11 +226295,17 @@ MOTIVATION:One of the core problems in the analysis of biological networks is th
     biotools:primaryContact "Shian Su" .
 
 <https://bio.tools/glimmer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0114 ;
-    sc:citation <https://doi.org/10.1093/bioinformatics/btm009> ;
+    sc:citation <https://doi.org/10.1093/bioinformatics/btm009>,
+        <https://doi.org/10.1093/nar/26.2.544>,
+        <https://doi.org/10.1093/nar/27.23.4636>,
+        "pmcid:PMC147303",
+        "pmcid:PMC148753",
+        "pubmed:10556321",
+        "pubmed:9421513" ;
     sc:description "System for finding genes in microbial DNA, especially the genomes of bacteria, archaea, and viruses. It uses interpolated Markov models (IMMs) to identify the coding regions and distinguish them from noncoding DNA." ;
     sc:featureList edam:operation_2454 ;
     sc:name "Glimmer" ;
@@ -223321,7 +226315,7 @@ MOTIVATION:One of the core problems in the analysis of biological networks is th
     sc:url "https://ccb.jhu.edu/software/glimmer/" .
 
 <https://bio.tools/glimmer-hmm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0114,
         edam:topic_0622 ;
@@ -223337,42 +226331,37 @@ MOTIVATION:One of the core problems in the analysis of biological networks is th
 
 <https://bio.tools/glimmermg> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3494" ;
-            sc:name "DNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3494" ],
+            sc:additionalType "http://edamontology.org/data_0916" ;
+            sc:name "Gene report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0916" ;
-            sc:name "Gene report" ;
-            sc:sameAs "http://edamontology.org/data_0916" ],
+            sc:additionalType "http://edamontology.org/data_0916" ;
+            sc:name "Gene report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0916" ;
-            sc:name "Gene report" ;
-            sc:sameAs "http://edamontology.org/data_0916" ] ;
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:name "DNA sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1249" ;
-            sc:name "Sequence length" ;
-            sc:sameAs "http://edamontology.org/data_1249" ],
+            sc:additionalType "http://edamontology.org/data_1353" ;
+            sc:name "Sequence motif" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0912" ;
-            sc:name "Nucleic acid property" ;
-            sc:sameAs "http://edamontology.org/data_0912" ],
+            sc:additionalType "http://edamontology.org/data_0914" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Codon usage data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0914" ;
-            sc:name "Codon usage data" ;
-            sc:sameAs "http://edamontology.org/data_0914" ],
+            sc:additionalType "http://edamontology.org/data_0916" ;
+            sc:name "Gene report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1353" ;
-            sc:name "Sequence motif" ;
-            sc:sameAs "http://edamontology.org/data_1353" ],
+            sc:additionalType "http://edamontology.org/data_0912" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Nucleic acid property" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0916" ;
-            sc:name "Gene report" ;
-            sc:sameAs "http://edamontology.org/data_0916" ],
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1249" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Sequence length" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_3174,
         edam:topic_3837 ;
@@ -223393,7 +226382,7 @@ coding regions and distinguish them from noncoding DNA. Licensed under Artistic
     biotools:primaryContact "David R. Kelley" .
 
 <https://bio.tools/glint> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3173,
@@ -223410,7 +226399,7 @@ coding regions and distinguish them from noncoding DNA. Licensed under Artistic
         "Eran Halperin" .
 
 <https://bio.tools/gliome_database> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0154,
@@ -223430,7 +226419,7 @@ Gliome Database has the following feature regarding glia-secreted proteins.""" ;
     sc:url "http://www.gliome.org" .
 
 <https://bio.tools/glmgampoi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2229,
@@ -223450,7 +226439,7 @@ The core design aims of glmGamPoi are:.""" ;
     sc:url "http://github.com/const-ae/glmGamPoi" .
 
 <https://bio.tools/glmgraph> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_2269 ;
@@ -223464,24 +226453,27 @@ The core design aims of glmGamPoi are:.""" ;
     sc:softwareHelp <https://cran.r-project.org/web/packages/glmgraph/glmgraph.pdf> ;
     sc:url "https://cran.r-project.org/web/packages/glmgraph/index.html" .
 
-<https://bio.tools/global_ocean_resistome_revealed> a sc:SoftwareApplication ;
-    sc:additionalType "Database portal" ;
-    sc:applicationSubCategory edam:topic_0798,
-        edam:topic_3174,
-        edam:topic_3299,
+<https://bio.tools/glo-in-one> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0634,
+        edam:topic_3382,
         edam:topic_3474 ;
-    sc:citation <https://doi.org/10.1093/GIGASCIENCE/GIAA046>,
-        "pmcid:PMC7213576",
-        "pubmed:32391909" ;
-    sc:description "Exploring antibiotic resistance gene abundance and distribution in TARA Oceans samples." ;
-    sc:featureList edam:operation_0436,
-        edam:operation_3460,
-        edam:operation_3482 ;
-    sc:name "Global ocean resistome revealed" ;
-    sc:url "http://www.resistomedb.com" .
+    sc:citation <https://doi.org/10.1117/1.JMI.9.5.052408>,
+        "pmcid:PMC9207519",
+        "pubmed:35747553" ;
+    sc:description "Holistic glomerular detection, segmentation, and lesion characterization with large-scale web image mining." ;
+    sc:featureList edam:operation_3799 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Apache-2.0" ;
+    sc:name "Glo-In-One" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/hrlblab/Glo-In-One" .
 
 <https://bio.tools/globalancova> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203 ;
@@ -223500,14 +226492,14 @@ The core design aims of glmGamPoi are:.""" ;
 
 <https://bio.tools/globalfungi> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ] ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Nucleic acid sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0857" ;
-            sc:name "Sequence search results" ;
-            sc:sameAs "http://edamontology.org/data_0857" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0857" ;
+            sc:encodingFormat "http://edamontology.org/format_2310" ;
+            sc:name "Sequence search results" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_3050,
         edam:topic_3299,
@@ -223528,7 +226520,7 @@ locations, sample metadata.""" ;
     biotools:primaryContact "Tomas Vetrovsky" .
 
 <https://bio.tools/globalmit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2269 ;
@@ -223548,7 +226540,7 @@ locations, sample metadata.""" ;
     biotools:primaryContact "Xuan Vinh Nguyen" .
 
 <https://bio.tools/globalseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -223570,7 +226562,7 @@ locations, sample metadata.""" ;
     biotools:primaryContact "Armin Rauschenberger" .
 
 <https://bio.tools/globaltest> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3053 ;
@@ -223589,7 +226581,7 @@ locations, sample metadata.""" ;
     biotools:primaryContact "Jelle Goeman" .
 
 <https://bio.tools/globetrotter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3056 ;
     sc:citation <https://doi.org/10.1126/science.1243518> ;
@@ -223604,7 +226596,7 @@ locations, sample metadata.""" ;
     sc:url "http://paintmychromosomes.com/" .
 
 <https://bio.tools/globplot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -223626,7 +226618,7 @@ locations, sample metadata.""" ;
     biotools:primaryContact "Dr Rune Linding" .
 
 <https://bio.tools/globplot_ws_jabaws> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1093/nar/gkg519> ;
@@ -223642,7 +226634,7 @@ locations, sample metadata.""" ;
     sc:url "http://www.compbio.dundee.ac.uk/jabaws/" .
 
 <https://bio.tools/globplotter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0736 ;
@@ -223658,7 +226650,7 @@ locations, sample metadata.""" ;
     sc:url "http://globplot.embl.de" .
 
 <https://bio.tools/glogs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3517 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/bts190> ;
@@ -223671,7 +226663,7 @@ locations, sample metadata.""" ;
     sc:url "http://www.bioinformatics.org/~stanhope/GLOGS/" .
 
 <https://bio.tools/gloryx> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3172,
@@ -223691,8 +226683,22 @@ Regioselectivity prediction for phase 1 and phase 2 metabolism.""" ;
     sc:name "GLORYx" ;
     sc:url "https://nerdd.zbh.uni-hamburg.de/" .
 
+<https://bio.tools/glowgenes> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0091,
+        edam:topic_0622 ;
+    sc:description "Prioritization of gene diseases candidates by disease-aware evaluation of heterogeneous evidence networks" ;
+    sc:isAccessibleForFree true ;
+    sc:license "CC-BY-NC-SA-4.0" ;
+    sc:name "GLOWgenes" ;
+    sc:operatingSystem "Linux" ;
+    sc:softwareHelp <https://github.com/TBLabFJD/GLOWgenes> ;
+    sc:url "http://www.glowgenes.org" ;
+    biotools:primaryContact <https://orcid.org/0000-0003-4099-9421> .
+
 <https://bio.tools/gloxinia> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0780,
@@ -223712,7 +226718,7 @@ If you use this code for a scientific publication, please consider citing our pa
     sc:url "https://github.com/opieters/gloxinia" .
 
 <https://bio.tools/glprobs_ws_jabaws> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btr304> ;
@@ -223727,7 +226733,7 @@ If you use this code for a scientific publication, please consider citing our pa
     sc:url "http://www.compbio.dundee.ac.uk/jabaws/" .
 
 <https://bio.tools/glu> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3305,
         edam:topic_3407,
@@ -223752,7 +226758,7 @@ GLU is a tool for analysing continuous glucose monitoring (CGM) data in epidemio
     sc:url "https://github.com/MRCIEU/GLU" .
 
 <https://bio.tools/glucose-insulin-modeling> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3300,
@@ -223767,8 +226773,26 @@ GLU is a tool for analysing continuous glucose monitoring (CGM) data in epidemio
     sc:url "https://www.mathworks.com/matlabcentral/fileexchange/42362-glucose-insulin-modeling" ;
     biotools:primaryContact "DaveA Albers" .
 
+<https://bio.tools/glue_multi-omics> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0769,
+        edam:topic_2229,
+        edam:topic_3366 ;
+    sc:citation <https://doi.org/10.1101/2021.08.22.457275> ;
+    sc:description "Graph-linked unified embedding for single-cell multi-omics data integration." ;
+    sc:featureList edam:operation_3096,
+        edam:operation_3659 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "GLUE" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/gao-lab/GLUE" .
+
 <https://bio.tools/glutantbase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0130,
         edam:topic_0154,
@@ -223790,7 +226814,7 @@ Glutantbase is a database, webtool and method to evaluate mutations for β-gluco
     sc:url "http://bioinfo.dcc.ufmg.br/glutantbase" .
 
 <https://bio.tools/glybranch> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3520 ;
     sc:citation <https://doi.org/10.1016/J.JPROT.2020.103649>,
@@ -223803,7 +226827,7 @@ Glutantbase is a database, webtool and method to evaluate mutations for β-gluco
     sc:url "https://github.com/bigict/glyBranch/" .
 
 <https://bio.tools/glycan_reader> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0154,
@@ -223820,7 +226844,7 @@ Glutantbase is a database, webtool and method to evaluate mutations for β-gluco
     biotools:primaryContact "Wonpil Im" .
 
 <https://bio.tools/glycangui> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0601,
         edam:topic_3520 ;
     sc:citation <https://doi.org/10.3389/FCHEM.2021.707382>,
@@ -223836,7 +226860,7 @@ Glutantbase is a database, webtool and method to evaluate mutations for β-gluco
     sc:url "https://github.com/ruizhang84/GlycanGUIApp" .
 
 <https://bio.tools/glycanmass> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -223851,8 +226875,31 @@ Glutantbase is a database, webtool and method to evaluate mutations for β-gluco
     sc:url "https://web.expasy.org/glycanmass/" ;
     biotools:primaryContact "ExPASy helpdesk" .
 
+<https://bio.tools/glyco> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0130,
+        edam:topic_0166,
+        edam:topic_0593,
+        edam:topic_0736,
+        edam:topic_2830 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAB791>,
+        "pmcid:PMC8796370",
+        "pubmed:34864901" ;
+    sc:description "A tool to quantify glycan shielding of glycosylated proteins." ;
+    sc:featureList edam:operation_0244,
+        edam:operation_0387,
+        edam:operation_2476 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "GLYCO" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/myungjinlee/GLYCO).<h4" .
+
 <https://bio.tools/glyco3d> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0152,
         edam:topic_0154,
@@ -223869,7 +226916,7 @@ Glutantbase is a database, webtool and method to evaluate mutations for β-gluco
     sc:url "http://glyco3d.cermav.cnrs.fr" .
 
 <https://bio.tools/glycocoo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Ontology" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0102,
@@ -223887,7 +226934,7 @@ Glutantbase is a database, webtool and method to evaluate mutations for β-gluco
     biotools:primaryContact <https://orcid.org/0000-0001-9504-189X> .
 
 <https://bio.tools/glycodigest> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -223909,7 +226956,7 @@ Glutantbase is a database, webtool and method to evaluate mutations for β-gluco
         "ExPASy helpdesk" .
 
 <https://bio.tools/glycoep> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078 ;
     sc:citation <https://doi.org/10.1371/journal.pone.0067008> ;
@@ -223921,10 +226968,10 @@ Glutantbase is a database, webtool and method to evaluate mutations for β-gluco
         "Mac",
         "Windows" ;
     sc:softwareHelp <http://crdd.osdd.net/raghava/glycoep/help.html> ;
-    sc:url "http://www.imtech.res.in/raghava/glycoep/" .
+    sc:url "https://webs.iiitd.edu.in/raghava/glycoep/" .
 
 <https://bio.tools/glycofragment> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0152,
@@ -223944,7 +226991,7 @@ Glutantbase is a database, webtool and method to evaluate mutations for β-gluco
     biotools:primaryContact "Lohmann K.K." .
 
 <https://bio.tools/glycoglyph> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_3382 ;
@@ -223958,7 +227005,7 @@ A glycan visualizing, drawing and naming application.""" ;
     sc:url "https://glycotoolkit.com/Tools/GlycoGlyph/" .
 
 <https://bio.tools/glycohunter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_3292,
@@ -223973,7 +227020,7 @@ A glycan visualizing, drawing and naming application.""" ;
     sc:url "https://glycohunter.wordpress.ncsu.edu/downloads/" .
 
 <https://bio.tools/glycomedb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0081,
@@ -223993,22 +227040,22 @@ A glycan visualizing, drawing and naming application.""" ;
 
 <https://bio.tools/glycomod> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3021" ;
-            sc:name "UniProt accession" ;
-            sc:sameAs "http://edamontology.org/data_3021" ],
+            sc:additionalType "http://edamontology.org/data_3021" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "UniProt accession" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1233" ;
-            sc:name "Sequence set (protein)" ;
-            sc:sameAs "http://edamontology.org/data_1233" ],
+            sc:additionalType "http://edamontology.org/data_1233" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Sequence set (protein)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0844" ;
-            sc:name "Molecular mass" ;
-            sc:sameAs "http://edamontology.org/data_0844" ] ;
+            sc:additionalType "http://edamontology.org/data_0844" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Molecular mass" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0846" ;
-            sc:name "Chemical formula" ;
-            sc:sameAs "http://edamontology.org/data_0846" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0846" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Chemical formula" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0082,
@@ -224031,14 +227078,14 @@ A glycan visualizing, drawing and naming application.""" ;
 
 <https://bio.tools/glyconnect> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0982" ;
-            sc:name "Molecule identifier" ;
-            sc:sameAs "http://edamontology.org/data_0982" ],
+            sc:additionalType "http://edamontology.org/data_2291" ;
+            sc:encodingFormat "http://edamontology.org/format_1963" ;
+            sc:name "UniProt ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2291" ;
-            sc:name "UniProt ID" ;
-            sc:sameAs "http://edamontology.org/data_2291" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0982" ;
+            sc:encodingFormat "http://edamontology.org/format_1963" ;
+            sc:name "Molecule identifier" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121 ;
     sc:citation <https://doi.org/10.1021/acs.jproteome.8b00766>,
@@ -224055,7 +227102,7 @@ A glycan visualizing, drawing and naming application.""" ;
     sc:url "https://glyconnect.expasy.org/" .
 
 <https://bio.tools/glyconnect-compozitor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0601,
@@ -224070,7 +227117,7 @@ A glycan visualizing, drawing and naming application.""" ;
     sc:url "https://glyconnect.expasy.org/compozitor/" .
 
 <https://bio.tools/glycopathdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0160,
@@ -224092,7 +227139,7 @@ Welcome to MonoPathDB, a database of biosynthesis pathways and enzymes for monos
     sc:url "http://www.bio.iitb.ac.in/glycopathdb/" .
 
 <https://bio.tools/glycopattern> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0154,
@@ -224109,7 +227156,7 @@ Welcome to MonoPathDB, a database of biosynthesis pathways and enzymes for monos
     sc:url "https://glycopattern.emory.edu/" .
 
 <https://bio.tools/glycopost> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -224127,32 +227174,45 @@ Loading GlycoPOST Application.""" ;
     sc:name "GlycoPOST" ;
     sc:url "https://glycopost.glycosmos.org/" .
 
+<https://bio.tools/glycopp> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:citation <https://doi.org/10.1371/journal.pone.0040155>,
+        "pmcid:PMC3392279",
+        "pubmed:22808107" ;
+    sc:description "GlycoPP is a webserver for predicting potential N-and O-glycosites in prokaryotic protein sequence(s), where N-glycosite is an Asn residue and O-glycosite could be a serine or threonine residue having a glycan attached covalently and enzymatically at amide or hydroxyl group respectively." ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "glycopp" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/glycopp/index.html> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/glycopp/index.html" .
+
 <https://bio.tools/glycosciences> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1127" ;
-            sc:name "PDB ID" ;
-            sc:sameAs "http://edamontology.org/data_1127" ],
+            sc:additionalType "http://edamontology.org/data_2796" ;
+            sc:name "Linucs ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2796" ;
-            sc:name "Linucs ID" ;
-            sc:sameAs "http://edamontology.org/data_2796" ],
+            sc:additionalType "http://edamontology.org/data_2752" ;
+            sc:name "GlycoMap ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2752" ;
-            sc:name "GlycoMap ID" ;
-            sc:sameAs "http://edamontology.org/data_2752" ] ;
+            sc:additionalType "http://edamontology.org/data_1127" ;
+            sc:name "PDB ID" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2753" ;
-            sc:name "Carbohydrate conformational map" ;
-            sc:sameAs "http://edamontology.org/data_2753" ],
+            sc:additionalType "http://edamontology.org/data_2753" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Carbohydrate conformational map" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2313" ;
-            sc:name "Carbohydrate report" ;
-            sc:sameAs "http://edamontology.org/data_2313" ],
+            sc:additionalType "http://edamontology.org/data_2313" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Carbohydrate report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2313" ;
-            sc:name "Carbohydrate report" ;
-            sc:sameAs "http://edamontology.org/data_2313" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2313" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Carbohydrate report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0152 ;
     sc:citation <https://doi.org/10.1093/glycob/cwj049> ;
@@ -224167,7 +227227,7 @@ Loading GlycoPOST Application.""" ;
     biotools:primaryContact "Thomas Lütteke" .
 
 <https://bio.tools/glycosearchms> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0152,
         edam:topic_3520 ;
@@ -224184,7 +227244,7 @@ Loading GlycoPOST Application.""" ;
     biotools:primaryContact "Lohmann K.K." .
 
 <https://bio.tools/glycositealign> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0122,
@@ -224201,7 +227261,7 @@ Loading GlycoPOST Application.""" ;
     biotools:primaryContact "ExPASy helpdesk" .
 
 <https://bio.tools/glycoviewer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0102,
@@ -224228,7 +227288,7 @@ Loading GlycoPOST Application.""" ;
     biotools:primaryContact "M. Wilkins" .
 
 <https://bio.tools/glycowork> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0152,
@@ -224245,7 +227305,7 @@ Loading GlycoPOST Application.""" ;
     biotools:primaryContact <https://orcid.org/0000-0002-3008-7851> .
 
 <https://bio.tools/glycresoft> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -224266,7 +227326,7 @@ Loading GlycoPOST Application.""" ;
     biotools:primaryContact "Joseph Zaia" .
 
 <https://bio.tools/glydin> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121 ;
     sc:description "Glydin' compiles and maps information relative to glycoepitopes (glycan determinants) as published in the literature or reported in databases. The output is an interactive network of strucutrally related glycan sub-structures." ;
@@ -224279,8 +227339,32 @@ Loading GlycoPOST Application.""" ;
     sc:url "http://glycoproteome.expasy.org/epitopes/" ;
     biotools:primaryContact "ExPASy helpdesk" .
 
+<https://bio.tools/glyinsrna> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_3495" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "RNA sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0099,
+        edam:topic_0160,
+        edam:topic_3170,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1080/15476286.2021.1982574>,
+        "pubmed:34559595" ;
+    sc:description "A webserver for predicting glycosylation sites on small RNAs." ;
+    sc:featureList edam:operation_0417,
+        edam:operation_3901,
+        edam:operation_3902 ;
+    sc:isAccessibleForFree true ;
+    sc:name "GlyinsRNA" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://www.rnanut.net/glyinsrna" .
+
 <https://bio.tools/glynest_and_casper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0152,
@@ -224302,7 +227386,7 @@ Loading GlycoPOST Application.""" ;
     sc:url "http://www.glycosciences.de/sweetdb/start.php?action=form_shift_estimation" .
 
 <https://bio.tools/glynsight> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121 ;
     sc:citation <https://doi.org/10.1093/glycob/cwy019>,
@@ -224318,7 +227402,7 @@ Loading GlycoPOST Application.""" ;
     biotools:primaryContact "ExPASy helpdesk" .
 
 <https://bio.tools/glypniro> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -224341,7 +227425,7 @@ The program can be run from the location of the script using python main.py. The
     sc:url "https://github.com/bschulzlab/glypniro" .
 
 <https://bio.tools/glyprot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082 ;
     sc:citation "pubmed:15980456" ;
@@ -224357,7 +227441,7 @@ The program can be run from the location of the script using python main.py. The
     biotools:primaryContact "Andreas Bohne-Lang" .
 
 <https://bio.tools/glys3> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121 ;
     sc:citation <https://doi.org/10.1371/journal.pone.0144578> ;
@@ -224372,7 +227456,7 @@ The program can be run from the location of the script using python main.py. The
     biotools:primaryContact "ExPASy helpdesk" .
 
 <https://bio.tools/glytoucan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0160,
@@ -224389,28 +227473,44 @@ GlyTouCan is the international glycan structure repository. This repository is a
     sc:name "GlyTouCan" ;
     sc:url "https://glytoucan.org" .
 
+<https://bio.tools/gm-pep> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_2269,
+        edam:topic_3168,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1021/ACS.JCIM.2C00089>,
+        "pubmed:35533298" ;
+    sc:description "GM-Pep is an integrated approach contained two parts, one is multi-class generator (CVAE model) which was responsibility for generating potential drug-like peptides, the other is multi-classifier (Deep-Multiclassifier) which predicted bioactivity probability of generated peptides by CVAE model." ;
+    sc:featureList edam:operation_3644 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "GM-Pep" ;
+    sc:url "https://github.com/TimothyChen225/GM-Pep" .
+
 <https://bio.tools/gmap> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1932" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1932" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102 ;
     sc:citation <https://doi.org/10.7490/f1000research.1114334.1>,
@@ -224426,38 +227526,38 @@ GlyTouCan is the international glycan structure repository. This repository is a
 
 <https://bio.tools/gmap_build> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2306" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1975" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0622 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/bti310>,
@@ -224476,26 +227576,26 @@ GlyTouCan is the international glycan structure repository. This repository is a
 
 <https://bio.tools/gmap_iit_store> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2306" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1975" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0622,
@@ -224517,18 +227617,18 @@ GlyTouCan is the international glycan structure repository. This repository is a
 
 <https://bio.tools/gmap_snpindex> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_2885 ;
@@ -224549,26 +227649,26 @@ GlyTouCan is the international glycan structure repository. This repository is a
 
 <https://bio.tools/gmapr> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ],
+            sc:additionalType "http://edamontology.org/data_1383" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Sequence alignment (nucleic acid)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1383" ;
-            sc:name "Sequence alignment (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1383" ] ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1383" ;
-            sc:name "Sequence alignment (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1383" ],
+            sc:additionalType "http://edamontology.org/data_1276" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Nucleic acid features" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1276" ;
-            sc:name "Nucleic acid features" ;
-            sc:sameAs "http://edamontology.org/data_1276" ],
+            sc:additionalType "http://edamontology.org/data_1383" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Sequence alignment (nucleic acid)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0867" ;
-            sc:name "Sequence alignment report" ;
-            sc:sameAs "http://edamontology.org/data_0867" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0867" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Sequence alignment report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0102,
@@ -224588,7 +227688,7 @@ GlyTouCan is the international glycan structure repository. This repository is a
     biotools:primaryContact "Michael Lawrence" .
 
 <https://bio.tools/gmata> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0160,
@@ -224609,7 +227709,7 @@ GlyTouCan is the international glycan structure repository. This repository is a
     biotools:primaryContact "Xuewen Wang" .
 
 <https://bio.tools/gmato> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654 ;
@@ -224625,7 +227725,7 @@ GlyTouCan is the international glycan structure repository. This repository is a
     sc:url "http://sourceforge.net/projects/gmato/" .
 
 <https://bio.tools/gmcloser> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0196,
@@ -224642,7 +227742,7 @@ GlyTouCan is the international glycan structure repository. This repository is a
     sc:url "http://sourceforge.net/projects/gmcloser/" .
 
 <https://bio.tools/gmd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API" ;
     sc:applicationSubCategory edam:topic_2258,
         edam:topic_3071 ;
@@ -224658,7 +227758,7 @@ GlyTouCan is the international glycan structure repository. This repository is a
     sc:url "http://gmd.mpimp-golm.mpg.de/REST/default.aspx" .
 
 <https://bio.tools/gmd-r> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1371/journal.pone.0023409> ;
@@ -224676,7 +227776,7 @@ GlyTouCan is the international glycan structure repository. This repository is a
     biotools:primaryContact "Albin Sandelin" .
 
 <https://bio.tools/gmdr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3053 ;
@@ -224696,8 +227796,30 @@ GlyTouCan is the international glycan structure repository. This repository is a
     sc:url "http://www.ssg.uab.edu/gmdr/" ;
     biotools:primaryContact "Xiang-Yang Lou" .
 
+<https://bio.tools/gmhcc> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0089,
+        edam:topic_0602,
+        edam:topic_3047,
+        edam:topic_3170,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC290>,
+        "pubmed:35451457" ;
+    sc:description "High-throughput Analysis of Biomolecular Data using Graph-based Multiple Hierarchical Consensus Clustering." ;
+    sc:featureList edam:operation_3223,
+        edam:operation_3432,
+        edam:operation_3501 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "GMHCC" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/yifuLu/GMHCC" .
+
 <https://bio.tools/gmiec> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0202,
@@ -224722,7 +227844,7 @@ GMIEC is a shiny application to integrate multi-omics data. GMIEC is a new user-
     sc:url "https://github.com/guidmt/GMIEC-shiny" .
 
 <https://bio.tools/gmm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_2885 ;
@@ -224736,7 +227858,7 @@ GMIEC is a shiny application to integrate multi-omics data. GMIEC is a new user-
     biotools:primaryContact "Sven Bergmann" .
 
 <https://bio.tools/gmorse> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3170 ;
@@ -224745,8 +227867,21 @@ GMIEC is a shiny application to integrate multi-omics data. GMIEC is a new user-
     sc:name "gmorse" ;
     sc:url "http://www.genoscope.cns.fr/externe/gmorse/" .
 
+<https://bio.tools/gmpesi> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:description "GMPEsi: Generalized Model for Predicting Efficacy of siRNAs" ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "GMPEsi" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/gmpesi/index.php> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/gmpesi/index.php" .
+
 <https://bio.tools/gmql> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3071,
         edam:topic_3168 ;
@@ -224758,8 +227893,28 @@ GMIEC is a shiny application to integrate multi-omics data. GMIEC is a new user-
     sc:softwareHelp <http://www.bioinformatics.deib.polimi.it/genomic_computing/GMQL/documentation.html> ;
     sc:url "http://www.bioinformatics.deib.polimi.it/genomic_computing/GMQL/index.html" .
 
+<https://bio.tools/gmqn> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0632,
+        edam:topic_0654,
+        edam:topic_3295,
+        edam:topic_3518 ;
+    sc:citation <https://doi.org/10.1101/2021.09.06.459116> ;
+    sc:description "GMQN is a reference based method that removes unwanted technical variations at signal intensity level between samples for 450K and 850K DNA methylation array. It can also easily combined with Subset-quantile Within Array Normalization(SWAN) or Beta-Mixture Quantile (BMIQ) Normalisation to remove probe design bias." ;
+    sc:featureList edam:operation_3204,
+        edam:operation_3431,
+        edam:operation_3435 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "GMQN" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/MengweiLi-project/gmqn" .
+
 <https://bio.tools/gmrp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3517 ;
@@ -224777,7 +227932,7 @@ GMIEC is a shiny application to integrate multi-omics data. GMIEC is a new user-
     biotools:primaryContact "Yuan-De Tan" .
 
 <https://bio.tools/gms> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_3169,
         edam:topic_3170 ;
@@ -224794,7 +227949,7 @@ GMIEC is a shiny application to integrate multi-omics data. GMIEC is a new user-
     biotools:primaryContact "Contact list" .
 
 <https://bio.tools/gmsca> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -224813,7 +227968,7 @@ GMSCA: Gene Multifunctionality in Secondary Co-expression Analysis.""" ;
     sc:url "https://github.com/drlaguna/GMSCA" .
 
 <https://bio.tools/gmstool> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0625,
@@ -224835,7 +227990,7 @@ GMStool is a tool of selecting an optimal marker-set for predicting a continuous
     sc:url "http://www.github.com/JaeYoonKim72/GMStool" .
 
 <https://bio.tools/gmv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654,
@@ -224849,8 +228004,25 @@ GMStool is a tool of selecting an optimal marker-set for predicting a continuous
     sc:softwareHelp <https://code.google.com/archive/p/gmv/> ;
     sc:url "https://code.google.com/p/gmv/" .
 
+<https://bio.tools/gmx_mmpbsa> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0176 ;
+    sc:citation <https://doi.org/10.1021/ACS.JCTC.1C00645>,
+        "pubmed:34586825" ;
+    sc:description "A New Tool to Perform End-State Free Energy Calculations with GROMACS." ;
+    sc:featureList edam:operation_0337 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "gmx_MMPBSA" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://valdes-tresanco-ms.github.io/gmx_MMPBSA/> ;
+    sc:url "https://github.com/Valdes-Tresanco-MS/gmx_MMPBSA" .
+
 <https://bio.tools/gmxapi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0176,
         edam:topic_0203 ;
@@ -224869,7 +228041,7 @@ GMStool is a tool of selecting an optimal marker-set for predicting a continuous
     sc:url "https://github.com/kassonlab/gmxapi" .
 
 <https://bio.tools/gna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -224885,7 +228057,7 @@ GMStool is a tool of selecting an optimal marker-set for predicting a continuous
     sc:url "http://ibis.inrialpes.fr/article122.html" .
 
 <https://bio.tools/gnat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2259 ;
@@ -224900,7 +228072,7 @@ GMStool is a tool of selecting an optimal marker-set for predicting a continuous
     sc:url "http://sourceforge.net/projects/gnatmatlab/" .
 
 <https://bio.tools/gnat_nmr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0176,
         edam:topic_0593,
@@ -224920,7 +228092,7 @@ GMStool is a tool of selecting an optimal marker-set for predicting a continuous
     biotools:primaryContact "Mathias Nilsson" .
 
 <https://bio.tools/gnc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2259,
@@ -224938,7 +228110,7 @@ GMStool is a tool of selecting an optimal marker-set for predicting a continuous
         "Norberto Díaz-Díaz" .
 
 <https://bio.tools/gnet2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0602,
@@ -224958,8 +228130,26 @@ GNET2 has been developed and used by the Bioinformatics, Data Mining and Machine
     sc:name "GNET2" ;
     sc:url "https://github.com/jianlin-cheng/GNET2" .
 
+<https://bio.tools/gnha> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3382,
+        edam:topic_3390,
+        edam:topic_3810 ;
+    sc:citation <https://doi.org/10.1093/CDN/NZAC031>,
+        "pmcid:PMC9007240",
+        "pubmed:35434472" ;
+    sc:description "Global Nutrition and Health Atlas (GNHA)." ;
+    sc:featureList edam:operation_0337 ;
+    sc:isAccessibleForFree true ;
+    sc:name "GNHA" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://sites.tufts.edu/gnha/" .
+
 <https://bio.tools/gniap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2640,
@@ -224979,7 +228169,7 @@ GNET2 has been developed and used by the Bioinformatics, Data Mining and Machine
     biotools:primaryContact <https://orcid.org/0000-0003-4469-1440> .
 
 <https://bio.tools/gnina> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0209,
@@ -224997,7 +228187,7 @@ gnina (pronounced NEE-na) is a molecular docking program with integrated support
     sc:url "https://github.com/gnina/gnina" .
 
 <https://bio.tools/gniplr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0602,
@@ -225014,8 +228204,87 @@ GNIPLR (gene networks inference based on projection and lagged regression) is a
     sc:name "GNIPLR" ;
     sc:url "https://github.com/zyllluck/GNIPLR" .
 
+<https://bio.tools/gnn-subnet> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0634,
+        edam:topic_2640,
+        edam:topic_3295,
+        edam:topic_3474,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.1101/2022.01.12.475995> ;
+    sc:description "Disease subnetwork detection with explainable Graph Neural Networks." ;
+    sc:featureList edam:operation_3435 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "GNN-SubNet" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/pievos101/GNN-SubNet" .
+
+<https://bio.tools/gnn-surrogate> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1109/TVCG.2022.3165345>,
+        "pubmed:35389867" ;
+    sc:description "A Hierarchical and Adaptive Graph Neural Network for Parameter Space Exploration of Unstructured-Mesh Ocean Simulations." ;
+    sc:featureList edam:operation_2426,
+        edam:operation_3799,
+        edam:operation_3927 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "GNN-Surrogate" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/trainsn/GNN-Surrogate" .
+
+<https://bio.tools/gnnhap> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workflow" ;
+    sc:applicationSubCategory edam:topic_0128,
+        edam:topic_0769,
+        edam:topic_3298,
+        edam:topic_3303,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC356>,
+        "pubmed:35608290" ;
+    sc:description "A graph neural network (GNN)-based automated pipeline (GNNHap) that could rapidly analyze mouse genetic model data and identify high probability causal genetic factors for analyzed traits." ;
+    sc:featureList edam:operation_0276,
+        edam:operation_0282 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "GNNHap" ;
+    sc:url "https://github.com/zqfang/gnnhap" .
+
+<https://bio.tools/gnnimpute> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0622,
+        edam:topic_2229,
+        edam:topic_3170,
+        edam:topic_3676 ;
+    sc:citation <https://doi.org/10.1186/S12859-021-04493-X>,
+        "pmcid:PMC8650344",
+        "pubmed:34876032" ;
+    sc:description "An efficient scRNA-seq dropout imputation method using graph attention network." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_3435,
+        edam:operation_3557,
+        edam:operation_3891 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Apache-2.0" ;
+    sc:name "GNNImpute" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/Lav-i/GNNImpute" .
+
 <https://bio.tools/gnomad> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
@@ -225041,7 +228310,7 @@ GNIPLR (gene networks inference based on projection and lagged regression) is a
     sc:url "http://gnomad.broadinstitute.org/" .
 
 <https://bio.tools/gnomadsup1> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3308,
         edam:topic_3320,
@@ -225063,7 +228332,7 @@ The Genome Aggregation Database (gnomAD) is a resource developed by an internati
     sc:url "https://gnomad.broadinstitute.org" .
 
 <https://bio.tools/gnome> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_0654,
@@ -225081,7 +228350,7 @@ The Genome Aggregation Database (gnomAD) is a resource developed by an internati
     sc:url "http://gnome.tchlab.org/" .
 
 <https://bio.tools/gnomo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0769,
@@ -225099,40 +228368,53 @@ Support: https://gitlab.com/gaspilleura/gnomo/.""" ;
     sc:name "gNOMO" ;
     sc:url "https://gitlab.com/rki_bioinformatics/gnomo" .
 
+<https://bio.tools/gnosis> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0199,
+        edam:topic_2640,
+        edam:topic_3168,
+        edam:topic_3360 ;
+    sc:citation <https://doi.org/10.12688/hrbopenres.13476.1>,
+        "pmcid:PMC9051584",
+        "pubmed:35677713" ;
+    sc:description "An R Shiny app supporting cancer genomics survival analysis with cBioPortal." ;
+    sc:featureList edam:operation_0337 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "GNOSIS" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://www.youtube.com/playlist?list=PL3tZnjbBSLRX-HkCmkRzitbS8XQmIPQyl> ;
+    sc:url "https://lydiaking.shinyapps.io/GNOSIS/" .
+
 <https://bio.tools/gnpis> a sc:SoftwareApplication ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ],
+            sc:additionalType "http://edamontology.org/data_2353" ;
+            sc:name "Ontology data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2080" ;
-            sc:name "Database search results" ;
-            sc:sameAs "http://edamontology.org/data_2080" ],
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:name "Sequence variations" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2353" ;
-            sc:name "Ontology data" ;
-            sc:sameAs "http://edamontology.org/data_2353" ],
+            sc:additionalType "http://edamontology.org/data_0850" ;
+            sc:name "Sequence set" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0920" ;
-            sc:name "Genotype/phenotype report" ;
-            sc:sameAs "http://edamontology.org/data_0920" ],
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:name "Sequence features" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ],
+            sc:additionalType "http://edamontology.org/data_0920" ;
+            sc:name "Genotype/phenotype report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ],
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:name "Sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0850" ;
-            sc:name "Sequence set" ;
-            sc:sameAs "http://edamontology.org/data_0850" ],
+            sc:additionalType "http://edamontology.org/data_2080" ;
+            sc:name "Database search results" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0842" ;
-            sc:name "Identifier" ;
-            sc:sameAs "http://edamontology.org/data_0842" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0842" ;
+            sc:name "Identifier" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0622,
@@ -225159,7 +228441,7 @@ Support: https://gitlab.com/gaspilleura/gnomo/.""" ;
     sc:url "https://urgi.versailles.inrae.fr/gnpis" .
 
 <https://bio.tools/gnps> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0153,
         edam:topic_3172,
@@ -225185,7 +228467,7 @@ Support: https://gitlab.com/gaspilleura/gnomo/.""" ;
     biotools:primaryContact "Mingxun Wang" .
 
 <https://bio.tools/gnu_mcsim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2259,
         edam:topic_2269,
@@ -225199,7 +228481,7 @@ Support: https://gitlab.com/gaspilleura/gnomo/.""" ;
     sc:url "http://www.gnu.org/software/mcsim/" .
 
 <https://bio.tools/gnumap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0622 ;
@@ -225213,7 +228495,7 @@ Support: https://gitlab.com/gaspilleura/gnomo/.""" ;
         "Dr. Quinn Snell" .
 
 <https://bio.tools/gnuvid> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0199,
@@ -225231,7 +228513,7 @@ Gene Novelty Unit-based Virus IDentification for SARS-CoV-2.""" ;
     sc:url "https://github.com/ahmedmagds/GNUVID" .
 
 <https://bio.tools/go> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0114,
@@ -225250,7 +228532,7 @@ Gene Novelty Unit-based Virus IDentification for SARS-CoV-2.""" ;
     biotools:primaryContact "Helpdesk" .
 
 <https://bio.tools/go-crispr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0769,
@@ -225271,7 +228553,7 @@ SUMMARY Genome-wide CRISPR screens are an effective discovery tool for genes tha
     sc:url "https://github.com/developerpiru/TRACS" .
 
 <https://bio.tools/go-elite> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0154,
@@ -225289,7 +228571,7 @@ SUMMARY Genome-wide CRISPR screens are an effective discovery tool for genes tha
     sc:url "http://www.genmapp.org/go_elite/" .
 
 <https://bio.tools/go-figure> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_3053,
@@ -225305,7 +228587,7 @@ GO-Figure! offers a simple solution for command-line plotting of informative sum
     sc:url "https://gitlab.com/evogenlab/GO-Figure" .
 
 <https://bio.tools/go2msig> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0089 ;
     sc:citation <https://doi.org/10.1186/1471-2105-15-146> ;
@@ -225320,7 +228602,7 @@ GO-Figure! offers a simple solution for command-line plotting of informative sum
     sc:url "http://www.bioinformatics.org/go2msig/" .
 
 <https://bio.tools/go_enrichment_tool> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0078,
@@ -225337,7 +228619,7 @@ GO-Figure! offers a simple solution for command-line plotting of informative sum
     sc:url "http://geneontology.org/page/go-enrichment-analysis" .
 
 <https://bio.tools/go_feat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0622,
@@ -225355,7 +228637,7 @@ GO-Figure! offers a simple solution for command-line plotting of informative sum
     biotools:primaryContact "Contact form" .
 
 <https://bio.tools/go_term_finder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0089 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/bth456> ;
@@ -225369,7 +228651,7 @@ GO-Figure! offers a simple solution for command-line plotting of informative sum
     sc:url "http://go.princeton.edu/cgi-bin/GOTermFinder" .
 
 <https://bio.tools/go_term_mapper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0089 ;
     sc:description "A tool for mapping the granular GO annotations for genes in a list to a set of broader, high-level GO parents terms." ;
@@ -225382,7 +228664,7 @@ GO-Figure! offers a simple solution for command-line plotting of informative sum
     sc:url "http://go.princeton.edu/cgi-bin/GOTermMapper" .
 
 <https://bio.tools/goa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0219,
@@ -225404,26 +228686,26 @@ GO-Figure! offers a simple solution for command-line plotting of informative sum
 
 <https://bio.tools/goa_gubbar> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0582" ;
-            sc:name "Ontology" ;
-            sc:sameAs "http://edamontology.org/data_0582" ],
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Peptide identification" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ],
+            sc:additionalType "http://edamontology.org/data_1864" ;
+            sc:encodingFormat "http://edamontology.org/format_2060" ;
+            sc:name "Map set data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1864" ;
-            sc:name "Map set data" ;
-            sc:sameAs "http://edamontology.org/data_1864" ],
+            sc:additionalType "http://edamontology.org/data_0582" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Ontology" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0582" ;
-            sc:name "Ontology" ;
-            sc:sameAs "http://edamontology.org/data_0582" ] ;
+            sc:additionalType "http://edamontology.org/data_0582" ;
+            sc:encodingFormat "http://edamontology.org/format_2549" ;
+            sc:name "Ontology" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3754" ;
-            sc:name "GO-term enrichment data" ;
-            sc:sameAs "http://edamontology.org/data_3754" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3754" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "GO-term enrichment data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0121,
@@ -225440,7 +228722,7 @@ GO-Figure! offers a simple solution for command-line plotting of informative sum
     sc:url "http://www.ms-utils.org/goa_gubbar/index.html" .
 
 <https://bio.tools/goalign> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Suite" ;
     sc:applicationSubCategory edam:topic_0080 ;
@@ -225455,7 +228737,7 @@ GO-Figure! offers a simple solution for command-line plotting of informative sum
     sc:url "https://github.com/fredericlemoine/goalign" .
 
 <https://bio.tools/goap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -225470,7 +228752,7 @@ GO-Figure! offers a simple solution for command-line plotting of informative sum
     sc:url "http://cssb.biology.gatech.edu/GOAP/index.html" .
 
 <https://bio.tools/goat_bones-ml> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3390,
@@ -225492,7 +228774,7 @@ Datasets and results will be uploaded after the manuscript will be send to a jou
     sc:url "https://gitlab.com/muntisa/goat-bones-machine-learning" .
 
 <https://bio.tools/goblet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -225515,7 +228797,7 @@ Datasets and results will be uploaded after the manuscript will be send to a jou
     biotools:primaryContact "Detlef Groth" .
 
 <https://bio.tools/goby_framework> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_3170 ;
     sc:citation <https://doi.org/10.1371/journal.pone.0079871> ;
@@ -225529,7 +228811,7 @@ Datasets and results will be uploaded after the manuscript will be send to a jou
     biotools:primaryContact "Goby-framework support" .
 
 <https://bio.tools/gobyweb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0654,
@@ -225550,10 +228832,9 @@ Datasets and results will be uploaded after the manuscript will be send to a jou
 
 <https://bio.tools/godef> a sc:SoftwareApplication ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2223" ;
-            sc:name "Ontology metadata" ;
-            sc:sameAs "http://edamontology.org/data_2223" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2223" ;
+            sc:name "Ontology metadata" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0089 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -225583,7 +228864,7 @@ Datasets and results will be uploaded after the manuscript will be send to a jou
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/godef.html" .
 
 <https://bio.tools/godel-numbering> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "Assigning Godel number to sequences, towards the definition of a new dimensional space for comparisons" ;
     sc:isAccessibleForFree true ;
     sc:license "MIT" ;
@@ -225593,14 +228874,13 @@ Datasets and results will be uploaded after the manuscript will be send to a jou
 
 <https://bio.tools/godmd> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ] ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein structure" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0883" ;
-            sc:name "Structure" ;
-            sc:sameAs "http://edamontology.org/data_0883" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0883" ;
+            sc:name "Structure" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0176 ;
     sc:citation <https://doi.org/10.1021/ct300494q>,
@@ -225617,7 +228897,7 @@ Datasets and results will be uploaded after the manuscript will be send to a jou
     biotools:primaryContact "Institute for Research in Biomedicine Barcelona" .
 
 <https://bio.tools/godoc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0621,
@@ -225637,7 +228917,7 @@ GODoc: A High-Throughput Protein Function Prediction using the Novel k-nearest-n
     sc:url "https://github.com/changlabtw/GODoc" .
 
 <https://bio.tools/goeast> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0203,
@@ -225658,7 +228938,7 @@ GODoc: A High-Throughput Protein Function Prediction using the Novel k-nearest-n
     biotools:primaryContact "Webmaster" .
 
 <https://bio.tools/goegcn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -225679,18 +228959,18 @@ Paper: RNA-Seq-based breast cancer subtype classification using machine learning
 
 <https://bio.tools/goenrichment> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ],
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Expression data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0582" ;
-            sc:name "Ontology" ;
-            sc:sameAs "http://edamontology.org/data_0582" ] ;
+            sc:additionalType "http://edamontology.org/data_0582" ;
+            sc:encodingFormat "http://edamontology.org/format_2197" ;
+            sc:name "Ontology" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3754" ;
-            sc:name "GO-term enrichment data" ;
-            sc:sameAs "http://edamontology.org/data_3754" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3754" ;
+            sc:encodingFormat "http://edamontology.org/format_3603" ;
+            sc:name "GO-term enrichment data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3308 ;
     sc:author "Daniel Faria" ;
@@ -225708,18 +228988,18 @@ It was developed by the BioData.pt / ELIXIR-PT team at the Instituto Gulbenkian
 
 <https://bio.tools/goexpress> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Gene expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ] ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_2058" ;
+            sc:name "Gene expression data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1636" ;
-            sc:name "Heat map" ;
-            sc:sameAs "http://edamontology.org/data_1636" ],
+            sc:additionalType "http://edamontology.org/data_1636" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Heat map" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1669" ;
-            sc:name "P-value" ;
-            sc:sameAs "http://edamontology.org/data_1669" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1669" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "P-value" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -225738,7 +229018,7 @@ It was developed by the BioData.pt / ELIXIR-PT team at the Instituto Gulbenkian
     biotools:primaryContact "Kevin Rue-Albrecht" .
 
 <https://bio.tools/goextender> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3053 ;
@@ -225750,8 +229030,29 @@ It was developed by the BioData.pt / ELIXIR-PT team at the Instituto Gulbenkian
     sc:softwareHelp <https://msu.edu/~jinchen/GOExtender/> ;
     sc:url "https://www.msu.edu/~jinchen/GOExtender/" .
 
+<https://bio.tools/gofasta> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0196,
+        edam:topic_0199,
+        edam:topic_0622,
+        edam:topic_3305 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC424>,
+        "pubmed:35789376" ;
+    sc:description "gofasta is a command-line utility developed to handle SARS-CoV-2 alignments, but should be useful more generally for handling consensus genomes of any microbial pathogen. It is used on datasets of millions of sequences, including by the United Kingdom's daily SARS-CoV-2 genome processing pipelines, Pangolin and Civet." ;
+    sc:featureList edam:operation_0491,
+        edam:operation_0525,
+        edam:operation_3182 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "gofasta" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/virus-evolution/gofasta" .
+
 <https://bio.tools/gofish> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0602,
@@ -225767,7 +229068,7 @@ It was developed by the BioData.pt / ELIXIR-PT team at the Instituto Gulbenkian
     sc:url "http://llama.mshri.on.ca/gofish/GoFishWelcome.html" .
 
 <https://bio.tools/gofuncr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0089 ;
     sc:description "It performs a gene ontology enrichment analysis based on the ontology enrichment software FUNC. GO-annotations are obtained from OrganismDb or OrgDb packages; the GO-graph is included in the package and updated regularly. GOfuncR provides the standard candidate vs. background enrichment analysis using the hypergeometric test, as well as three additional tests." ;
@@ -225784,7 +229085,7 @@ It was developed by the BioData.pt / ELIXIR-PT team at the Instituto Gulbenkian
     biotools:primaryContact "Steffi Grote" .
 
 <https://bio.tools/gofunction> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0622 ;
@@ -225802,7 +229103,7 @@ It was developed by the BioData.pt / ELIXIR-PT team at the Instituto Gulbenkian
     biotools:primaryContact "Jing Wang" .
 
 <https://bio.tools/gogene> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0218 ;
     sc:citation "pubmed:19465383" ;
@@ -225815,7 +229116,7 @@ It was developed by the BioData.pt / ELIXIR-PT team at the Instituto Gulbenkian
     sc:url "http://gopubmed.biotec.tu-dresden.de/gogene" .
 
 <https://bio.tools/gold> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_2275,
@@ -225832,7 +229133,7 @@ It was developed by the BioData.pt / ELIXIR-PT team at the Instituto Gulbenkian
     sc:url "http://www.ccdc.cam.ac.uk/solutions/csd-discovery/components/gold/" .
 
 <https://bio.tools/goldb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_3174,
         edam:topic_3277,
@@ -225851,7 +229152,7 @@ GOLD: Genomes Online Database, is a World Wide Web resource for comprehensive ac
     sc:url "https://gold.jgi.doe.gov/" .
 
 <https://bio.tools/golden_helix> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3168,
@@ -225873,7 +229174,7 @@ GOLD: Genomes Online Database, is a World Wide Web resource for comprehensive ac
         "General" .
 
 <https://bio.tools/goldilocks> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0622,
@@ -225894,14 +229195,14 @@ GOLD: Genomes Online Database, is a World Wide Web resource for comprehensive ac
 
 <https://bio.tools/gomapman> a sc:SoftwareApplication ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0582" ;
-            sc:name "Ontology" ;
-            sc:sameAs "http://edamontology.org/data_0582" ],
+            sc:additionalType "http://edamontology.org/data_0916" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Gene report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0916" ;
-            sc:name "Gene report" ;
-            sc:sameAs "http://edamontology.org/data_0916" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0582" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Ontology" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0085,
         edam:topic_0089,
@@ -225934,7 +229235,7 @@ GOLD: Genomes Online Database, is a World Wide Web resource for comprehensive ac
     sc:url "http://www.gomapman.org/" .
 
 <https://bio.tools/gominer_ws> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1186/gb-2003-4-4-r28> ;
@@ -225949,7 +229250,7 @@ GOLD: Genomes Online Database, is a World Wide Web resource for comprehensive ac
     sc:url "http://discover.nci.nih.gov/gominer/goservice.jsp" .
 
 <https://bio.tools/gomodeler> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0085,
         edam:topic_0203,
@@ -225966,10 +229267,9 @@ GOLD: Genomes Online Database, is a World Wide Web resource for comprehensive ac
 
 <https://bio.tools/goname> a sc:SoftwareApplication ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2223" ;
-            sc:name "Ontology metadata" ;
-            sc:sameAs "http://edamontology.org/data_2223" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2223" ;
+            sc:name "Ontology metadata" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0089 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -225999,7 +229299,7 @@ GOLD: Genomes Online Database, is a World Wide Web resource for comprehensive ac
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/goname.html" .
 
 <https://bio.tools/gone> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_3053,
@@ -226012,8 +229312,26 @@ GOLD: Genomes Online Database, is a World Wide Web resource for comprehensive ac
     sc:softwareHelp <http://bcrc.bio.umass.edu/pedigreesoftware/node/9> ;
     sc:url "http://bcrc.bio.umass.edu/pedigreesoftware/node/9" .
 
+<https://bio.tools/gontosim> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workbench" ;
+    sc:applicationSubCategory edam:topic_0089,
+        edam:topic_0821,
+        edam:topic_3070 ;
+    sc:citation <https://doi.org/10.1038/S41598-022-07624-3>,
+        "pmcid:PMC8907294",
+        "pubmed:35264663" ;
+    sc:description "GOntoSimis a method to determine the functional similarity between genes." ;
+    sc:featureList edam:operation_2422,
+        edam:operation_3432,
+        edam:operation_3435 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "GOntoSim" ;
+    sc:url "http://www.cbrlab.org/GOntoSim.html" .
+
 <https://bio.tools/gonuts> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0089 ;
     sc:citation <https://doi.org/10.1093/nar/gkr907> ;
@@ -226027,7 +229345,7 @@ GOLD: Genomes Online Database, is a World Wide Web resource for comprehensive ac
     sc:url "http://gowiki.tamu.edu/wiki/index.php/Main_Page" .
 
 <https://bio.tools/googlegenomics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0622,
@@ -226045,8 +229363,31 @@ GOLD: Genomes Online Database, is a World Wide Web resource for comprehensive ac
     sc:url "http://bioconductor.org/packages/release/bioc/html/GoogleGenomics.html" ;
     biotools:primaryContact "Siddhartha Bagaria" .
 
+<https://bio.tools/gopeaks> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0749,
+        edam:topic_0769,
+        edam:topic_3169,
+        edam:topic_3295,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.1186/S13059-022-02707-W>,
+        "pmcid:PMC9252088",
+        "pubmed:35788238" ;
+    sc:description "GoPeaks is a peak caller designed for CUT&TAG/CUT&RUN sequencing data. GoPeaks by default works best with narrow peaks such as H3K4me3 and transcription factors. However, broad epigenetic marks like H3K27Ac/H3K4me1 require different the step, slide, and minwidth parameters. We encourage users to explore the parameters of GoPeaks to analyze their data." ;
+    sc:featureList edam:operation_3215,
+        edam:operation_3222,
+        edam:operation_3435 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "GoPeaks" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/maxsonBraunLab/gopeaks" .
+
 <https://bio.tools/goplot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0092 ;
@@ -226061,7 +229402,7 @@ GOLD: Genomes Online Database, is a World Wide Web resource for comprehensive ac
     sc:url "https://wencke.github.io/" .
 
 <https://bio.tools/gopro> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2815,
@@ -226080,7 +229421,7 @@ GOLD: Genomes Online Database, is a World Wide Web resource for comprehensive ac
     biotools:primaryContact "Lidia Chrabaszcz" .
 
 <https://bio.tools/goprofiles> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203 ;
@@ -226099,7 +229440,7 @@ GOLD: Genomes Online Database, is a World Wide Web resource for comprehensive ac
     biotools:primaryContact "Alex Sanchez" .
 
 <https://bio.tools/gopubmed> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0089 ;
     sc:citation "pubmed:15980585" ;
@@ -226114,7 +229455,7 @@ GOLD: Genomes Online Database, is a World Wide Web resource for comprehensive ac
     biotools:primaryContact "Michael Schroeder" .
 
 <https://bio.tools/gorgon> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0092,
@@ -226131,7 +229472,7 @@ GOLD: Genomes Online Database, is a World Wide Web resource for comprehensive ac
     sc:url "http://gorgon.wustl.edu/" .
 
 <https://bio.tools/gorilla> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0085,
         edam:topic_0089,
@@ -226149,14 +229490,14 @@ GOLD: Genomes Online Database, is a World Wide Web resource for comprehensive ac
 
 <https://bio.tools/gorth> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0842" ;
-            sc:name "Identifier" ;
-            sc:sameAs "http://edamontology.org/data_0842" ] ;
+            sc:additionalType "http://edamontology.org/data_0842" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Identifier" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0842" ;
-            sc:name "Identifier" ;
-            sc:sameAs "http://edamontology.org/data_0842" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0842" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Identifier" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3299,
         edam:topic_3345 ;
@@ -226179,14 +229520,14 @@ GOLD: Genomes Online Database, is a World Wide Web resource for comprehensive ac
 
 <https://bio.tools/gosemsim> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0582" ;
-            sc:name "Ontology" ;
-            sc:sameAs "http://edamontology.org/data_0582" ] ;
+            sc:additionalType "http://edamontology.org/data_0582" ;
+            sc:encodingFormat "http://edamontology.org/format_2195" ;
+            sc:name "Ontology" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1772" ;
-            sc:name "Score" ;
-            sc:sameAs "http://edamontology.org/data_1772" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1772" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Score" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0089 ;
@@ -226205,7 +229546,7 @@ GOLD: Genomes Online Database, is a World Wide Web resource for comprehensive ac
     biotools:primaryContact <http://orcid.org/0000-0002-6485-8781> .
 
 <https://bio.tools/goseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3170 ;
@@ -226227,26 +229568,26 @@ GOLD: Genomes Online Database, is a World Wide Web resource for comprehensive ac
 
 <https://bio.tools/gosim> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1027" ;
-            sc:name "Gene ID (NCBI)" ;
-            sc:sameAs "http://edamontology.org/data_1027" ] ;
+            sc:additionalType "http://edamontology.org/data_1027" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Gene ID (NCBI)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0582" ;
-            sc:name "Ontology" ;
-            sc:sameAs "http://edamontology.org/data_0582" ],
+            sc:additionalType "http://edamontology.org/data_2872" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "ID list" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1772" ;
-            sc:name "Score" ;
-            sc:sameAs "http://edamontology.org/data_1772" ],
+            sc:additionalType "http://edamontology.org/data_1772" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Score" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ],
+            sc:additionalType "http://edamontology.org/data_0582" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Ontology" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2872" ;
-            sc:name "ID list" ;
-            sc:sameAs "http://edamontology.org/data_2872" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0089,
@@ -226267,14 +229608,14 @@ GOLD: Genomes Online Database, is a World Wide Web resource for comprehensive ac
 
 <https://bio.tools/goslin> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0984" ;
-            sc:name "Molecule name" ;
-            sc:sameAs "http://edamontology.org/data_0984" ] ;
+            sc:additionalType "http://edamontology.org/data_0984" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Molecule name" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0984" ;
-            sc:name "Molecule name" ;
-            sc:sameAs "http://edamontology.org/data_0984" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0984" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Molecule name" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Bioinformatics portal" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0091,
@@ -226295,8 +229636,28 @@ GOLD: Genomes Online Database, is a World Wide Web resource for comprehensive ac
     sc:softwareVersion "1.1.2" ;
     sc:url "https://github.com/lifs-tools/goslin" .
 
+<https://bio.tools/gosling> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0092,
+        edam:topic_0203,
+        edam:topic_0622,
+        edam:topic_3500 ;
+    sc:citation <https://doi.org/10.1109/TVCG.2021.3114876>,
+        "pmcid:PMC8826597",
+        "pubmed:34596551" ;
+    sc:description "A Grammar-based Toolkit for Scalable and Interactive Genomics Data Visualization." ;
+    sc:featureList edam:operation_0337 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "Gosling" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://gosling.js.org" .
+
 <https://bio.tools/gossto> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0797,
         edam:topic_3053,
@@ -226315,7 +229676,7 @@ GOLD: Genomes Online Database, is a World Wide Web resource for comprehensive ac
     biotools:primaryContact "Support" .
 
 <https://bio.tools/gostag> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0203,
@@ -226340,26 +229701,26 @@ GOLD: Genomes Online Database, is a World Wide Web resource for comprehensive ac
 
 <https://bio.tools/gostats> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Gene expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ],
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Gene expression data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0582" ;
-            sc:name "Ontology" ;
-            sc:sameAs "http://edamontology.org/data_0582" ] ;
+            sc:additionalType "http://edamontology.org/data_0582" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Ontology" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1772" ;
-            sc:name "Score" ;
-            sc:sameAs "http://edamontology.org/data_1772" ],
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ],
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Plot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1772" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Score" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0089,
@@ -226380,14 +229741,12 @@ GOLD: Genomes Online Database, is a World Wide Web resource for comprehensive ac
 
 <https://bio.tools/gosummaries> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1276" ;
-            sc:name "Nucleic acid features" ;
-            sc:sameAs "http://edamontology.org/data_1276" ] ;
+            sc:additionalType "http://edamontology.org/data_1276" ;
+            sc:name "Nucleic acid features" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:name "Image" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_2269,
@@ -226406,7 +229765,7 @@ GOLD: Genomes Online Database, is a World Wide Web resource for comprehensive ac
     sc:url "http://raivokolde.github.io/GOsummaries/" .
 
 <https://bio.tools/gosurfer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0602,
@@ -226422,7 +229781,7 @@ GOLD: Genomes Online Database, is a World Wide Web resource for comprehensive ac
     sc:url "http://systemsbio.ucsd.edu/GoSurfer/" .
 
 <https://bio.tools/gothic> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0102,
@@ -226443,7 +229802,7 @@ GOLD: Genomes Online Database, is a World Wide Web resource for comprehensive ac
     biotools:primaryContact "Borbala Mifsud" .
 
 <https://bio.tools/goti> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0625,
@@ -226465,7 +229824,7 @@ The implement of GOTI-seq requires the following sofwares pre-installed on your
     sc:url "https://github.com/sydaileen/GOTI-seq" .
 
 <https://bio.tools/gotohscan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654 ;
@@ -226481,7 +229840,7 @@ The implement of GOTI-seq requires the following sofwares pre-installed on your
     sc:url "http://www.bioinf.uni-leipzig.de/Software/GotohScan/" .
 
 <https://bio.tools/gotools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0089,
@@ -226504,7 +229863,7 @@ The implement of GOTI-seq requires the following sofwares pre-installed on your
     biotools:primaryContact "Agnes Paquet" .
 
 <https://bio.tools/gotree> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0769,
@@ -226522,8 +229881,31 @@ The implement of GOTI-seq requires the following sofwares pre-installed on your
         "Windows" ;
     sc:url "https://github.com/evolbioinfo/gotree" .
 
+<https://bio.tools/govs> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0196,
+        edam:topic_0625,
+        edam:topic_0780,
+        edam:topic_3810 ;
+    sc:citation <https://doi.org/10.1093/BIB/BBAB447>,
+        "pubmed:34676389" ;
+    sc:description "Genome optimization via virtual simulation to accelerate maize hybrid breeding." ;
+    sc:featureList edam:operation_0310,
+        edam:operation_0479,
+        edam:operation_3196 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "GOVS" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://github.com/GOVS-pack/GOVS/blob/master/GOVS-Reference-Manual.pdf> ;
+    sc:softwareVersion "1.0" ;
+    sc:url "https://govs-pack.github.io/" .
+
 <https://bio.tools/gowinda> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Ontology" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3056,
@@ -226543,7 +229925,7 @@ The implement of GOTI-seq requires the following sofwares pre-installed on your
     biotools:primaryContact "Robert Kofler" .
 
 <https://bio.tools/gp2s> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0607,
         edam:topic_0611,
@@ -226567,7 +229949,7 @@ gP2S (for Genentech’s Protein to Structure) is a user-friendly web-based labor
     sc:url "https://github.com/arohou/gP2S" .
 
 <https://bio.tools/gp4> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0140,
@@ -226588,7 +229970,7 @@ GP4 - Gram Positive Protein Prediction Pipeline.""" ;
     sc:url "http://gp4.hpc.rug.nl/" .
 
 <https://bio.tools/gpAnnotate> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0121,
@@ -226612,7 +229994,7 @@ The Glycopeptide Spectrum Annotation program ( gpAnnotate ) is designed to annot
     sc:url "https://virtualglycome.org/gpAnnotate" .
 
 <https://bio.tools/gpa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3053,
@@ -226627,8 +230009,30 @@ The Glycopeptide Spectrum Annotation program ( gpAnnotate ) is designed to annot
     sc:softwareHelp <https://github.com/dongjunchung/GPA/blob/master/inst/doc/GPA-example.pdf?raw=true> ;
     sc:url "http://dongjunchung.github.io/GPA/" .
 
+<https://bio.tools/gpa-tree> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_2269,
+        edam:topic_2885,
+        edam:topic_3517 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAB802>,
+        "pubmed:34849578" ;
+    sc:description "Statistical Approach for Functional-Annotation-Tree-Guided Prioritization of GWAS Results." ;
+    sc:featureList edam:operation_0484,
+        edam:operation_3196,
+        edam:operation_3557,
+        edam:operation_3659,
+        edam:operation_3661 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "GPA-Tree" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://dongjunchung.github.io/GPATree/" .
+
 <https://bio.tools/gpalignment> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0194,
         edam:topic_0199,
@@ -226645,10 +230049,9 @@ The Glycopeptide Spectrum Annotation program ( gpAnnotate ) is designed to annot
 
 <https://bio.tools/gpar> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:name "Expression data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0202,
@@ -226671,7 +230074,7 @@ GPAR provides drug repurposing and MOAs prediction services. Using gene expressi
     sc:url "http://gpar.idrug.net.cn/" .
 
 <https://bio.tools/gpart> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_2885,
@@ -226693,7 +230096,7 @@ GPAR provides drug repurposing and MOAs prediction services. Using gene expressi
     biotools:primaryContact "Sun Ah Kim" .
 
 <https://bio.tools/gpcards> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0625,
@@ -226712,7 +230115,7 @@ GPAR provides drug repurposing and MOAs prediction services. Using gene expressi
     sc:url "http://genemed.tech/gpcards/" .
 
 <https://bio.tools/gpcounts> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2269,
@@ -226729,7 +230132,7 @@ GPcounts is Gaussian process regression package for counts data with negative bi
     sc:url "https://github.com/ManchesterBioinference/GPcounts" .
 
 <https://bio.tools/gpcr-ca> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0121 ;
@@ -226745,7 +230148,7 @@ GPcounts is Gaussian process regression package for counts data with negative bi
     biotools:primaryContact "Xuan Xiao" .
 
 <https://bio.tools/gpcr-modsim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0736,
         edam:topic_0820,
@@ -226763,7 +230166,7 @@ GPcounts is Gaussian process regression package for counts data with negative bi
     sc:url "http://open.gpcr-modsim.org/" .
 
 <https://bio.tools/gpcr-pendb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0623,
@@ -226786,10 +230189,10 @@ To analyze the sequence either upload a file with the sequences in FASTA format,
 
 <https://bio.tools/gpcr-ssfe> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3671" ;
-            sc:name "Text" ;
-            sc:sameAs "http://edamontology.org/data_3671" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3671" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Text" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Suite",
         "Web application" ;
@@ -226811,14 +230214,13 @@ To analyze the sequence either upload a file with the sequences in FASTA format,
 
 <https://bio.tools/gpcr_sarfari_blast_search> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0857" ;
-            sc:name "Sequence search results" ;
-            sc:sameAs "http://edamontology.org/data_0857" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0857" ;
+            sc:name "Sequence search results" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0820,
@@ -226840,14 +230242,12 @@ To analyze the sequence either upload a file with the sequences in FASTA format,
 
 <https://bio.tools/gpcr_sarfari_small_molecule_search> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3490" ;
-            sc:name "Chemical structure sketch" ;
-            sc:sameAs "http://edamontology.org/data_3490" ] ;
+            sc:additionalType "http://edamontology.org/data_3490" ;
+            sc:name "Chemical structure sketch" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0962" ;
-            sc:name "Small molecule report" ;
-            sc:sameAs "http://edamontology.org/data_0962" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0962" ;
+            sc:name "Small molecule report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0820 ;
     sc:author "ChEMBL Team" ;
@@ -226866,7 +230266,7 @@ To analyze the sequence either upload a file with the sequences in FASTA format,
     biotools:primaryContact "Mark Davies" .
 
 <https://bio.tools/gpcrautomodel> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -226884,46 +230284,36 @@ To analyze the sequence either upload a file with the sequences in FASTA format,
 
 <https://bio.tools/gpcrdb> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ],
+            sc:additionalType "http://edamontology.org/data_2974" ;
+            sc:name "Protein sequence (raw)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2974" ;
-            sc:name "Protein sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_2974" ] ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:name "Protein structure" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2886" ;
-            sc:name "Protein sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2886" ],
+            sc:additionalType "http://edamontology.org/data_2886" ;
+            sc:name "Protein sequence record" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0857" ;
-            sc:name "Sequence search results" ;
-            sc:sameAs "http://edamontology.org/data_0857" ],
+            sc:additionalType "http://edamontology.org/data_0857" ;
+            sc:name "Sequence search results" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1381" ;
-            sc:name "Sequence alignment (pair)" ;
-            sc:sameAs "http://edamontology.org/data_1381" ],
+            sc:additionalType "http://edamontology.org/data_1381" ;
+            sc:name "Sequence alignment (pair)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1707" ;
-            sc:name "Phylogenetic tree image" ;
-            sc:sameAs "http://edamontology.org/data_1707" ],
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:name "Protein structure" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ],
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:name "Protein features" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ],
+            sc:additionalType "http://edamontology.org/data_0872" ;
+            sc:name "Phylogenetic tree" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0872" ;
-            sc:name "Phylogenetic tree" ;
-            sc:sameAs "http://edamontology.org/data_0872" ],
+            sc:additionalType "http://edamontology.org/data_1707" ;
+            sc:name "Phylogenetic tree image" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application",
         "Web service" ;
@@ -226962,14 +230352,12 @@ To analyze the sequence either upload a file with the sequences in FASTA format,
 
 <https://bio.tools/gpcrhmm> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:name "Protein sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:name "Protein features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
@@ -226986,7 +230374,7 @@ To analyze the sequence either upload a file with the sequences in FASTA format,
     sc:url "http://gpcrhmm.sbc.su.se/" .
 
 <https://bio.tools/gpcrm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2275 ;
@@ -227001,7 +230389,7 @@ To analyze the sequence either upload a file with the sequences in FASTA format,
     sc:url "http://gpcrm.biomodellab.eu" .
 
 <https://bio.tools/gpcrpred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3474 ;
     sc:citation "pubmed:15215416" ;
@@ -227015,19 +230403,18 @@ To analyze the sequence either upload a file with the sequences in FASTA format,
         "Mac",
         "Windows" ;
     sc:softwareHelp <http://crdd.osdd.net/raghava/gpcrpred/help.html> ;
-    sc:url "http://www.imtech.res.in/raghava/gpcrpred/" ;
+    sc:url "https://webs.iiitd.edu.in/raghava/gpcrpred/" ;
     biotools:primaryContact "Dr. G.P.S. Raghava" .
 
 <https://bio.tools/gpcrs> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1131" ;
-            sc:name "Protein family name" ;
-            sc:sameAs "http://edamontology.org/data_1131" ] ;
+            sc:additionalType "http://edamontology.org/data_1131" ;
+            sc:name "Protein family name" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Protein features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0820 ;
@@ -227042,7 +230429,7 @@ To analyze the sequence either upload a file with the sequences in FASTA format,
     sc:url "http://gpcrdb.org/" .
 
 <https://bio.tools/gpcrsclass> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -227063,7 +230450,7 @@ To analyze the sequence either upload a file with the sequences in FASTA format,
     biotools:primaryContact "G.P.S. Raghava" .
 
 <https://bio.tools/gpcrsignal> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0176,
         edam:topic_0199,
@@ -227087,7 +230474,7 @@ To analyze the sequence either upload a file with the sequences in FASTA format,
     sc:url "https://gpcrsignal.biomodellab.eu/" .
 
 <https://bio.tools/gpdbn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_2640,
@@ -227102,8 +230489,28 @@ To analyze the sequence either upload a file with the sequences in FASTA format,
     sc:name "GPDBN" ;
     sc:url "https://github.com/isfj/GPDBN" .
 
+<https://bio.tools/gpedit> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0099,
+        edam:topic_0208,
+        edam:topic_2640,
+        edam:topic_3517 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAB810>,
+        "pubmed:34534336" ;
+    sc:description "GPEdit systematically investigated the impact of genetic variants and pharmacogenomics landscape of RNA editing event across multiple cancer types." ;
+    sc:featureList edam:operation_0282,
+        edam:operation_3096,
+        edam:operation_3799 ;
+    sc:isAccessibleForFree true ;
+    sc:name "GPEdit" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://hanlab.uth.edu/GPEdit/" .
+
 <https://bio.tools/gpgpufragfold> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0196,
@@ -227123,7 +230530,7 @@ To analyze the sequence either upload a file with the sequences in FASTA format,
     sc:url "http://bioinfadmin.cs.ucl.ac.uk/downloads/gpufragfold/" .
 
 <https://bio.tools/gphmm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2885,
@@ -227141,7 +230548,7 @@ To analyze the sequence either upload a file with the sequences in FASTA format,
     sc:url "http://bioinformatics.ustc.edu.cn/gphmm/" .
 
 <https://bio.tools/gpkpdsimtoolbox> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3373,
@@ -227158,7 +230565,7 @@ To analyze the sequence either upload a file with the sequences in FASTA format,
     biotools:primaryContact "Iraj Hosseini" .
 
 <https://bio.tools/gplink> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_3517 ;
     sc:citation <https://doi.org/10.1086/519795>,
@@ -227172,22 +230579,8 @@ To analyze the sequence either upload a file with the sequences in FASTA format,
     sc:softwareHelp <http://zzz.bwh.harvard.edu/plink/gplink.shtml> ;
     sc:url "http://zzz.bwh.harvard.edu/plink/gplink.shtml" .
 
-<https://bio.tools/gplot2> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0203,
-        edam:topic_0602,
-        edam:topic_0634 ;
-    sc:citation <https://doi.org/10.3892/MMR.2019.10696>,
-        "pmcid:PMC6797989",
-        "pubmed:31545495" ;
-    sc:description "> MEDIUM CONFIDENCE! | > HOMEPAGE BROKEN! | > COMMON LINK WITH (PUB. & NAME DIFFERENT) bio.tools/ggplot2 (GGPLOT2.ORG) | > CORRECT NAME OF TOOL COULD ALSO BE 'DEGs' | Bioinformatics analysis of gene expression profile data to screen key genes involved in intracranial aneurysms | Intracranial aneurysm (IA) is a cerebrovascular disease with a high mortality rate. The pathogenesis of IA remains unclear and the treatment limited. The purpose of the present study was to identify the key genes expressed in IAs and provide the basis for further research and treatment. The raw dataset GSE75436 was downloaded from Gene Expression Omnibus, including 15 IA samples and 15 matched superficial temporal artery (STA) samples. Then, differentially expressed genes (DEGs) were identified using the limma package in R software. Hierarchical clustering analysis was performed on the DEGs using the gplot2 package in R" ;
-    sc:featureList edam:operation_0313,
-        edam:operation_2436,
-        edam:operation_3223 ;
-    sc:name "gplot2" ;
-    sc:url "http://ggplot2.org" .
-
 <https://bio.tools/gpls> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2269 ;
@@ -227204,7 +230597,7 @@ To analyze the sequence either upload a file with the sequences in FASTA format,
     biotools:primaryContact "BioConductor Package Maintainer" .
 
 <https://bio.tools/gpm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0622 ;
@@ -227222,22 +230615,21 @@ To analyze the sequence either upload a file with the sequences in FASTA format,
 
 <https://bio.tools/gpmaw> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ],
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:encodingFormat "http://edamontology.org/format_3654" ;
+            sc:name "Mass spectrometry data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ] ;
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:encodingFormat "http://edamontology.org/format_3653" ;
+            sc:name "Mass spectrometry data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrum" ;
-            sc:sameAs "http://edamontology.org/data_0943" ],
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_3711" ;
+            sc:name "Peptide identification" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:name "Mass spectrum" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3520,
@@ -227260,7 +230652,7 @@ To analyze the sequence either upload a file with the sequences in FASTA format,
     biotools:primaryContact "Lighthouse data" .
 
 <https://bio.tools/gpmaw_lite> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_1775 ;
@@ -227277,7 +230669,7 @@ To analyze the sequence either upload a file with the sequences in FASTA format,
     biotools:primaryContact "Contact Form" .
 
 <https://bio.tools/gpmdb_api> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3071 ;
@@ -227292,7 +230684,7 @@ To analyze the sequence either upload a file with the sequences in FASTA format,
     sc:url "http://wiki.thegpm.org/wiki/GPMDB_REST" .
 
 <https://bio.tools/gpminer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0749,
@@ -227309,7 +230701,7 @@ To analyze the sequence either upload a file with the sequences in FASTA format,
     biotools:primaryContact "Tzong-Yi Lee" .
 
 <https://bio.tools/gppat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0097 ;
@@ -227325,7 +230717,7 @@ To analyze the sequence either upload a file with the sequences in FASTA format,
     biotools:primaryContact "Ziding Zhang" .
 
 <https://bio.tools/gppf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0199,
@@ -227346,7 +230738,7 @@ To reproduce experiments described in the paper the following are also required:
     sc:url "https://github.com/AlgoLab/gppf" .
 
 <https://bio.tools/gpps> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0199,
@@ -227366,7 +230758,7 @@ We provide gpps, that can be used to infer cancer progressions from single cell
     sc:url "https://github.com/AlgoLab/gpps" .
 
 <https://bio.tools/gpredictor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_3474 ;
@@ -227382,7 +230774,7 @@ m7Gpredictor was implemented in python 2.7.""" ;
     sc:url "https://github.com/NWAFU-LiuLab/m7Gpredictor" .
 
 <https://bio.tools/gprege> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203 ;
@@ -227402,7 +230794,7 @@ m7Gpredictor was implemented in python 2.7.""" ;
     biotools:primaryContact "Alfredo Kalaitzis" .
 
 <https://bio.tools/gprimer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0632,
         edam:topic_0769,
@@ -227420,18 +230812,18 @@ m7Gpredictor was implemented in python 2.7.""" ;
 
 <https://bio.tools/gprofile_r> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3021" ;
-            sc:name "UniProt accession" ;
-            sc:sameAs "http://edamontology.org/data_3021" ],
+            sc:additionalType "http://edamontology.org/data_2295" ;
+            sc:encodingFormat "http://edamontology.org/format_1964" ;
+            sc:name "Gene ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2295" ;
-            sc:name "Gene ID" ;
-            sc:sameAs "http://edamontology.org/data_2295" ] ;
+            sc:additionalType "http://edamontology.org/data_3021" ;
+            sc:encodingFormat "http://edamontology.org/format_1964" ;
+            sc:name "UniProt accession" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Pathway or network" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Suite" ;
     sc:applicationSubCategory edam:topic_0089,
@@ -227459,18 +230851,18 @@ m7Gpredictor was implemented in python 2.7.""" ;
 
 <https://bio.tools/gprofiler> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2872" ;
-            sc:name "ID list" ;
-            sc:sameAs "http://edamontology.org/data_2872" ] ;
+            sc:additionalType "http://edamontology.org/data_2872" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "ID list" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3753" ;
-            sc:name "Over-representation data" ;
-            sc:sameAs "http://edamontology.org/data_3753" ],
+            sc:additionalType "http://edamontology.org/data_3753" ;
+            sc:encodingFormat "http://edamontology.org/format_3468" ;
+            sc:name "Over-representation data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2872" ;
-            sc:name "ID list" ;
-            sc:sameAs "http://edamontology.org/data_2872" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2872" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "ID list" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0089,
@@ -227504,7 +230896,7 @@ m7Gpredictor was implemented in python 2.7.""" ;
     biotools:primaryContact "Institute of Computer Science, University of Tartu" .
 
 <https://bio.tools/gprotpred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3070 ;
     sc:citation <https://doi.org/10.1016/j.bbapap.2016.02.005>,
@@ -227519,7 +230911,7 @@ m7Gpredictor was implemented in python 2.7.""" ;
     sc:url "http://aias.biol.uoa.gr/GprotPRED/" .
 
 <https://bio.tools/gpruler> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0621,
@@ -227539,7 +230931,7 @@ m7Gpredictor was implemented in python 2.7.""" ;
     biotools:primaryContact <https://orcid.org/0000-0002-3090-4823> .
 
 <https://bio.tools/gps> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0749,
@@ -227558,7 +230950,7 @@ m7Gpredictor was implemented in python 2.7.""" ;
         "Yuchun Guo" .
 
 <https://bio.tools/gps-palm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0153,
@@ -227579,7 +230971,7 @@ Kinase-specific Phosphorylation Site Prediction.""" ;
     sc:url "http://gpspalm.biocuckoo.cn/" .
 
 <https://bio.tools/gps-sumo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0160,
@@ -227599,8 +230991,50 @@ Kinase-specific Phosphorylation Site Prediction.""" ;
     biotools:primaryContact "Jian Ren",
         "Yu Xue" .
 
+<https://bio.tools/gps-uber> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application",
+        "Workbench" ;
+    sc:applicationSubCategory edam:topic_0601,
+        edam:topic_0821,
+        edam:topic_3068,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1093/BIB/BBAB574>,
+        "pubmed:35037020" ;
+    sc:description "Hybrid-learning framework for prediction of general and E3-specific lysine ubiquitination sites." ;
+    sc:featureList edam:operation_0417,
+        edam:operation_3659,
+        edam:operation_3755 ;
+    sc:isAccessibleForFree true ;
+    sc:name "GPS-Uber" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://gpsuber.biocuckoo.cn/" .
+
+<https://bio.tools/gps2space> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_3053,
+        edam:topic_3305,
+        edam:topic_3318 ;
+    sc:citation <https://doi.org/10.35566/JBDS/V1N2/P5>,
+        "pmcid:PMC8915920",
+        "pubmed:35281484" ;
+    sc:description "A Python library for building spatial data and extracting spatial measures from raw GPS data." ;
+    sc:featureList edam:operation_2422,
+        edam:operation_3435,
+        edam:operation_3891 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "GPS2space" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/shuai-zhou/GPS2space" .
+
 <https://bio.tools/gpsdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0089,
@@ -227622,7 +231056,7 @@ Kinase-specific Phosphorylation Site Prediction.""" ;
     biotools:primaryContact "Contact Form" .
 
 <https://bio.tools/gpse> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0621,
@@ -227646,7 +231080,7 @@ Before run GPSE to a genome or a dataset of sequences, users should carefully mo
     sc:url "https://github.com/JinyuanSun/GPSE" .
 
 <https://bio.tools/gpseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Suite" ;
     sc:applicationSubCategory edam:topic_3170 ;
@@ -227661,8 +231095,29 @@ Before run GPSE to a genome or a dataset of sequences, users should carefully mo
     sc:url "http://www-rcf.usc.edu/%7Eliangche/software.html" ;
     biotools:primaryContact "Liang Chen" .
 
+<https://bio.tools/gpsmatch> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_3169,
+        edam:topic_3170 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAB728>,
+        "pmcid:PMC8756198",
+        "pubmed:34672337" ;
+    sc:description "An R Package for Comparing Genomic-binding Profile Similarity among Transcriptional Regulators using Customizable Databases." ;
+    sc:featureList edam:operation_0224,
+        edam:operation_0314,
+        edam:operation_3431 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "GPSmatch" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/Bao-Lab/GPSmatch" .
+
 <https://bio.tools/gpsno> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0208,
         edam:topic_0625,
@@ -227683,8 +231138,21 @@ GPSno systematically investigated the impact of genetic variants and pharmacogen
     sc:name "GPSno" ;
     sc:url "http://hanlab.uth.edu/GPSno" .
 
+<https://bio.tools/gpsr> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:description "GPSR 1.0: This package developed mainly for UNIX machines. It can be downloaded from webs.iiitd.edu.in/raghava/gpsr/" ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "gpsr" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/gpsr/> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/gpsr/" .
+
 <https://bio.tools/gpsy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_1775,
@@ -227705,7 +231173,7 @@ GPSno systematically investigated the impact of genetic variants and pharmacogen
         "GenOuest BioInformatics Platform" .
 
 <https://bio.tools/gpu-bsm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0654 ;
@@ -227718,7 +231186,7 @@ GPSno systematically investigated the impact of genetic variants and pharmacogen
     sc:url "http://www.itb.cnr.it/web/bioinformatics/gpu-bsm" .
 
 <https://bio.tools/gpu-cassert> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0081,
@@ -227736,7 +231204,7 @@ GPSno systematically investigated the impact of genetic variants and pharmacogen
     biotools:primaryContact <http://orcid.org/0000-0001-6764-6656> .
 
 <https://bio.tools/gpu-darwin> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0654,
@@ -227757,8 +231225,41 @@ This implementation can be used to run on CPU only, or use the GPU-accelerated v
     sc:name "GPU-Darwin" ;
     sc:url "https://github.com/Tongdongq/darwin-gpu" .
 
+<https://bio.tools/gpu-enabled_docker_container_with_jupyterlab_for_ai> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web service" ;
+    sc:applicationSubCategory edam:topic_3474 ;
+    sc:description "An open-source, docker-based, and GPU-enabled jupyterlab notebook has been developed that can run on any compute infrastructure for rapid prototyping and developing end-to-end AI projects. In addition, with such a notebook, long-running AI model training programs can be executed remotely. Other features include GPU support for faster training, git integration for version control, the option of creating and executing pipelines of notebooks, and the availability of multiple dashboards for monitoring compute resources." ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "GPU-enabled docker container with Jupyterlab for AI" ;
+    sc:operatingSystem "Linux" ;
+    sc:softwareVersion "0.1" ;
+    sc:url "https://github.com/anuprulez/ml-jupyter-notebook" .
+
+<https://bio.tools/gpu-i-tasser> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Desktop application",
+        "Library",
+        "Workflow" ;
+    sc:applicationSubCategory edam:topic_0082,
+        edam:topic_0130,
+        edam:topic_0196,
+        edam:topic_0736 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAB871>,
+        "pmcid:PMC8896630",
+        "pubmed:34978562" ;
+    sc:description "A GPU accelerated I-TASSER protein structure prediction tool." ;
+    sc:featureList edam:operation_0302,
+        edam:operation_0474,
+        edam:operation_1777 ;
+    sc:isAccessibleForFree true ;
+    sc:name "GPU-I-TASSER" ;
+    sc:operatingSystem "Windows" ;
+    sc:url "https://zhanggroup.org/GPU-I-TASSER/" .
+
 <https://bio.tools/gpu3snp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2885,
@@ -227771,7 +231272,7 @@ This implementation can be used to run on CPU only, or use the GPU-accelerated v
     sc:url "http://sourceforge.net/projects/gpu3snp/" .
 
 <https://bio.tools/gpu_mrbayes> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_2269,
@@ -227787,7 +231288,7 @@ This implementation can be used to run on CPU only, or use the GPU-accelerated v
     biotools:primaryContact "Ming-Ming Ren" .
 
 <https://bio.tools/gpufit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_3569 ;
     sc:citation <https://doi.org/10.1038/s41598-017-15313-9> ;
@@ -227802,7 +231303,7 @@ This implementation can be used to run on CPU only, or use the GPU-accelerated v
     biotools:primaryContact "Mark Bates" .
 
 <https://bio.tools/gpumotif> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654,
@@ -227817,7 +231318,7 @@ This implementation can be used to run on CPU only, or use the GPU-accelerated v
     biotools:primaryContact "Zhaohui Qin" .
 
 <https://bio.tools/gpuzoo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -227836,8 +231337,25 @@ This implementation can be used to run on CPU only, or use the GPU-accelerated v
         "Windows" ;
     sc:url "https://netzoo.github.io/zooanimals/gpuzoo/" .
 
+<https://bio.tools/gqcp> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0203,
+        edam:topic_3314 ;
+    sc:citation <https://doi.org/10.1063/5.0057515>,
+        "pubmed:34470369" ;
+    sc:description "The Ghent Quantum Chemistry Package (GQCP) is an open-source electronic structure software package that aims to provide an intuitive and expressive software framework for electronic structure software development. Its high-level interfaces (accessible through C++ and Python) have been specifically designed to correspond to theoretical concepts, while retaining access to lower-level intermediates and allowing structural run-time modifications of quantum chemical solvers. GQCP focuses on providing quantum chemical method developers with the computational \"building blocks\" that allow them to flexibly develop proof of principle implementations for new methods and applications up to the level of two-component spinor bases." ;
+    sc:isAccessibleForFree true ;
+    sc:license "LGPL-3.0" ;
+    sc:name "GQCP" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://gqcg.github.io/GQCP/landing-page.html" .
+
 <https://bio.tools/gqspsim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0202,
         edam:topic_0769,
@@ -227859,7 +231377,7 @@ The app is used for QSP Modeling and Simulation.""" ;
     sc:url "https://www.mathworks.com/matlabcentral/fileexchange/73631-gqspsim" .
 
 <https://bio.tools/gqtlbase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0625 ;
     sc:description "Infrastructure for eQTL, mQTL and similar studies." ;
@@ -227877,7 +231395,7 @@ The app is used for QSP Modeling and Simulation.""" ;
     biotools:primaryContact "VJ Carey" .
 
 <https://bio.tools/gqtlstats> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3307 ;
@@ -227896,7 +231414,7 @@ The app is used for QSP Modeling and Simulation.""" ;
     biotools:primaryContact "VJ Carey" .
 
 <https://bio.tools/gquant> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_3292,
@@ -227915,7 +231433,7 @@ The app is used for QSP Modeling and Simulation.""" ;
     sc:url "https://www.frontiersin.org/articles/10.3389/fchem.2021.707738/full#supplementary-material" .
 
 <https://bio.tools/gr-align> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_1317,
         edam:topic_2814 ;
@@ -227929,7 +231447,7 @@ The app is used for QSP Modeling and Simulation.""" ;
     biotools:primaryContact "Nataša Pržulj" .
 
 <https://bio.tools/graal> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2259 ;
@@ -227944,7 +231462,7 @@ The app is used for QSP Modeling and Simulation.""" ;
     biotools:primaryContact "Natasa Przulj" .
 
 <https://bio.tools/grabb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0196,
@@ -227967,7 +231485,7 @@ The app is used for QSP Modeling and Simulation.""" ;
     biotools:primaryContact "Balázs Brankovics" .
 
 <https://bio.tools/grabcas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3510,
         edam:topic_3534 ;
@@ -227981,7 +231499,7 @@ The app is used for QSP Modeling and Simulation.""" ;
     sc:url "http://www.uniklinikum-saarland.de/einrichtungen/fachrichtungen/humangenetik/software/" .
 
 <https://bio.tools/grabseqs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_3168,
@@ -228000,7 +231518,7 @@ Utility for simplifying bulk downloading data from next-generation sequencing re
     sc:url "https://github.com/louiejtaylor/grabseqs" .
 
 <https://bio.tools/gracy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0102,
@@ -228026,7 +231544,7 @@ GRACy is a bioinformatic tool designed for the analysis of Illumina data origina
     sc:url "https://bioinformatics.cvr.ac.uk/software/" .
 
 <https://bio.tools/grad-seq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0659,
@@ -228043,8 +231561,31 @@ Analysis-of-a-photosynthetic-cyanobacterium-rich-in-internal-membrane-systems-vi
     sc:name "Grad-seq" ;
     sc:url "https://sunshine.biologie.uni-freiburg.de/GradSeqExplorer/" .
 
+<https://bio.tools/grade> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workflow" ;
+    sc:applicationSubCategory edam:topic_0199,
+        edam:topic_0632,
+        edam:topic_3168,
+        edam:topic_3512,
+        edam:topic_3519 ;
+    sc:citation <https://doi.org/10.1186/S12859-022-04561-W>,
+        "pmcid:PMC8750845",
+        "pubmed:35012455" ;
+    sc:description "a long-read sequencing approach to efficiently identifying the CYP11B1/CYP11B2 chimeric form in patients with glucocorticoid-remediable aldosteronism." ;
+    sc:featureList edam:operation_0308,
+        edam:operation_0346,
+        edam:operation_0450 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "GRAde" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/hsu-binfo/GRAde" .
+
 <https://bio.tools/graditude> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description """GRADitude: a computational tool for Grad-seq data analysis
 
 Grad-seq is a high-throughput profiling approach for the organism-wide detection of RNA-RNA and RNA-protein interactions in which molecular complexes are separated in a gradient by shape and size (Smirnov et al., 2016, PNAS). Grad-seq separates native cellular lysates including complexes, according to their molecular weight and shape in a glycerol gradient, independent of charge and sequence. After this fractionation, RNA-seq and MS-analysis of each of the fractions generated allows the reconstruction of the sedimentation profiles of all detectable RNAs and protein in a single experiment. Further analysis can reveal possible interactions between the individual molecules.""" ;
@@ -228054,7 +231595,7 @@ Grad-seq is a high-throughput profiling approach for the organism-wide detection
     sc:url "https://foerstner-lab.github.io/GRADitude/" .
 
 <https://bio.tools/graemlin> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
@@ -228074,7 +231615,7 @@ Grad-seq is a high-throughput profiling approach for the organism-wide detection
         "Serafim Batzoglou's lab" .
 
 <https://bio.tools/grafimo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_2885,
@@ -228093,8 +231634,32 @@ GRAFIMO (GRAph-based Finding of Individual Motif Occurrences) is a command-line
     sc:name "GRAFIMO" ;
     sc:url "https://github.com/pinellolab/GRAFIMO" .
 
+<https://bio.tools/grafss> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0097,
+        edam:topic_0099,
+        edam:topic_0154,
+        edam:topic_0160,
+        edam:topic_0166 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAC402>,
+        "pmcid:PMC9252811",
+        "pubmed:35639505" ;
+    sc:description "A webserver for substructure similarity searching and comparisons in the structures of proteins and RNA." ;
+    sc:featureList edam:operation_0245,
+        edam:operation_0337,
+        edam:operation_0480,
+        edam:operation_2421,
+        edam:operation_2487 ;
+    sc:isAccessibleForFree true ;
+    sc:name "GrAfSS" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://mfrlab.org/grafss/" .
+
 <https://bio.tools/graftm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3174,
@@ -228114,7 +231679,7 @@ GRAFIMO (GRAph-based Finding of Individual Motif Occurrences) is a command-line
     biotools:primaryContact "Gene W Tyson" .
 
 <https://bio.tools/grailbio> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3512,
@@ -228129,8 +231694,30 @@ GRAFIMO (GRAph-based Finding of Individual Motif Occurrences) is a command-line
     sc:name "grailbio" ;
     sc:url "https://github.com/grailbio/bio/tree/master/fusion" .
 
+<https://bio.tools/graingenes> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_0625,
+        edam:topic_0780,
+        edam:topic_3500,
+        edam:topic_3517 ;
+    sc:citation <https://doi.org/10.3390/FOODS11070914>,
+        "pmcid:PMC8998097",
+        "pubmed:35407001" ;
+    sc:description "GrainGenes, a database for Triticeae and Avena, is a comprehensive resource for molecular and phenotypic information for wheat, barley, rye, and other related species, including oat." ;
+    sc:featureList edam:operation_0282,
+        edam:operation_3208,
+        edam:operation_3799 ;
+    sc:isAccessibleForFree true ;
+    sc:name "GrainGenes" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://wheat.pw.usda.gov/cgi-bin/GG3/browse.cgi" .
+
 <https://bio.tools/grall> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0202,
@@ -228148,7 +231735,7 @@ GRALL – [IFM] LABORATOIRE D’INGÉNIERIE DES FONCTIONS MOLÉCULAIRES.""" ;
     sc:url "https://ifm.chimie.unistra.fr/grall" .
 
 <https://bio.tools/gramene> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0602,
@@ -228165,7 +231752,7 @@ GRALL – [IFM] LABORATOIRE D’INGÉNIERIE DES FONCTIONS MOLÉCULAIRES.""" ;
     biotools:primaryContact "Contact Form" .
 
 <https://bio.tools/gramm-x> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -228189,7 +231776,7 @@ GRALL – [IFM] LABORATOIRE D’INGÉNIERIE DES FONCTIONS MOLÉCULAIRES.""" ;
     biotools:primaryContact "Andrey Tovchigrechko" .
 
 <https://bio.tools/grammar_string> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0097,
@@ -228205,8 +231792,27 @@ GRALL – [IFM] LABORATOIRE D’INGÉNIERIE DES FONCTIONS MOLÉCULAIRES.""" ;
     sc:url "http://www.cse.msu.edu/~achawana/grammar-string/" ;
     biotools:primaryContact "Yanni Sun" .
 
+<https://bio.tools/granatumx> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Desktop application",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0099,
+        edam:topic_0749,
+        edam:topic_0769 ;
+    sc:citation <https://doi.org/10.1016/J.GPB.2021.07.005>,
+        "pmcid:PMC8864242",
+        "pubmed:34973417" ;
+    sc:description "GranatumX: A community engaging and flexible software environment for single-cell analysis." ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "GranatumX" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://garmiregroup.org/granatumx/app" .
+
 <https://bio.tools/grand> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0154,
@@ -228229,7 +231835,7 @@ This Python module is designed to be run with OpenMM in order to simulate grand
     sc:url "https://github.com/essex-lab/grand" .
 
 <https://bio.tools/grand-database> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0659,
@@ -228250,7 +231856,7 @@ This Python module is designed to be run with OpenMM in order to simulate grand
     sc:url "https://grand.networkmedicine.org" .
 
 <https://bio.tools/grape> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0092,
@@ -228267,7 +231873,7 @@ This Python module is designed to be run with OpenMM in order to simulate grand
     sc:url "http://grape.uwbacter.org" .
 
 <https://bio.tools/grape_database> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0622 ;
     sc:citation <https://doi.org/10.1186/1471-2229-14-99>,
@@ -228285,7 +231891,7 @@ This Python module is designed to be run with OpenMM in order to simulate grand
     biotools:primaryContact <http://orcid.org/0000-0002-9571-0747> .
 
 <https://bio.tools/grape_rna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_0769,
@@ -228303,8 +231909,31 @@ This Python module is designed to be run with OpenMM in order to simulate grand
     biotools:primaryContact "Maik Röder",
         "Roderic Guigó" .
 
+<https://bio.tools/grapes> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0140,
+        edam:topic_0621,
+        edam:topic_2229 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAC279>,
+        "pubmed:35474477" ;
+    sc:description "The Granule Protein Enrichment Server for prediction of biological condensate constituents." ;
+    sc:featureList edam:operation_0310,
+        edam:operation_3092,
+        edam:operation_3454 ;
+    sc:isAccessibleForFree true ;
+    sc:name "GraPES" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://grapes.msl.ubc.ca/" .
+
 <https://bio.tools/grapes-dd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3071,
         edam:topic_3315,
@@ -228323,7 +231952,7 @@ This Python module is designed to be run with OpenMM in order to simulate grand
     biotools:primaryContact <https://orcid.org/0000-0002-1637-7545> .
 
 <https://bio.tools/grapfi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -228344,22 +231973,22 @@ An amendment to this paper has been published and can be accessed via the origin
 
 <https://bio.tools/graph> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ] ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Pathway or network" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2984" ;
-            sc:name "Pathway or network report" ;
-            sc:sameAs "http://edamontology.org/data_2984" ],
+            sc:additionalType "http://edamontology.org/data_2984" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Pathway or network report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ],
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Pathway or network" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Image" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -228380,7 +232009,7 @@ An amendment to this paper has been published and can be accessed via the origin
     biotools:primaryContact "BioConductor Package Maintainer" .
 
 <https://bio.tools/graph-based-segmentation-retinal-layers-oct-images> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3315,
@@ -228398,8 +232027,29 @@ An amendment to this paper has been published and can be accessed via the origin
     sc:url "https://www.mathworks.com/matlabcentral/fileexchange/43518-graph-based-segmentation-of-retinal-layers-in-oct-images" ;
     biotools:primaryContact "pangyuteng" .
 
+<https://bio.tools/graph-dom> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0602,
+        edam:topic_3316,
+        edam:topic_3520 ;
+    sc:citation <https://doi.org/10.1109/BIBM52615.2021.9669289>,
+        "pmcid:PMC9007174",
+        "pubmed:35425661" ;
+    sc:description "Graph Theoretic Approach for the Analysis of Comprehensive Mass-Spectrometry (MS/MS) Data of Dissolved Organic Matter." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3860 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "Graph-DOM" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/Usman095/Graph-DOM" .
+
 <https://bio.tools/graph-gpa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3295,
@@ -228419,7 +232069,7 @@ An amendment to this paper has been published and can be accessed via the origin
         "Hang J. Kim" .
 
 <https://bio.tools/graph-package> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3315,
@@ -228435,8 +232085,35 @@ An amendment to this paper has been published and can be accessed via the origin
     sc:url "https://www.mathworks.com/matlabcentral/fileexchange/12648-graph-package" ;
     biotools:primaryContact "Kyaw Tun" .
 
+<https://bio.tools/graph-pka> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1463" ;
+            sc:name "Small molecule structure" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2301" ;
+            sc:name "SMILES string" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_3047,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAB714>,
+        "pmcid:PMC8756178",
+        "pubmed:34643666" ;
+    sc:description "Multi-instance learning of graph neural networks for aqueous pKa prediction." ;
+    sc:featureList edam:operation_3629,
+        edam:operation_3642,
+        edam:operation_3891,
+        edam:operation_4009 ;
+    sc:isAccessibleForFree true ;
+    sc:name "Graph-pKa" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://pka.simm.ac.cn/" .
+
 <https://bio.tools/graph2go> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_3391 ;
     sc:citation <https://doi.org/10.1093/gigascience/giaa081> ;
@@ -228449,16 +232126,37 @@ An amendment to this paper has been published and can be accessed via the origin
     sc:softwareHelp <https://github.com/yanzhanglab/Graph2GO> ;
     sc:url "https://github.com/yanzhanglab/Graph2GO" .
 
+<https://bio.tools/graph2mda> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0202,
+        edam:topic_3375,
+        edam:topic_3379,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAB792>,
+        "pubmed:34864873" ;
+    sc:description "A multi-modal variational graph embedding model for predicting microbe-drug associations." ;
+    sc:featureList edam:operation_2940,
+        edam:operation_3927 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "Graph2MDA" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/moen-hyb/Graph2MDA" .
+
 <https://bio.tools/graph_extract> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0218,
@@ -228470,8 +232168,26 @@ An amendment to this paper has been published and can be accessed via the origin
     sc:softwareHelp <http://www.quadtechassociates.com/freeware/graphextract3.pdf> ;
     sc:url "http://www.quadtechassociates.com/freeware.html" .
 
+<https://bio.tools/graph_mapping> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Desktop application" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_3315,
+        edam:topic_3678 ;
+    sc:citation <https://doi.org/10.3758/S13428-022-01846-Z>,
+        "pubmed:35441361" ;
+    sc:description "A novel and simple test to validly assess fluid reasoning." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_2429 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "Graph Mapping" ;
+    sc:operatingSystem "Linux",
+        "Windows" ;
+    sc:url "https://osf.io/wh7zv/" .
+
 <https://bio.tools/graphalignment> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -228490,7 +232206,7 @@ An amendment to this paper has been published and can be accessed via the origin
     biotools:primaryContact "Joern P. Meier" .
 
 <https://bio.tools/graphat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3517 ;
@@ -228507,7 +232223,7 @@ An amendment to this paper has been published and can be accessed via the origin
     biotools:primaryContact "Thomas LaFramboise" .
 
 <https://bio.tools/graphbin> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
@@ -228528,10 +232244,9 @@ GraphBin is a NGS data-based metagenomic contig bin refinment tool that makes us
 
 <https://bio.tools/graphbind> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:name "Protein structure" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0099,
@@ -228553,8 +232268,28 @@ GraphBind only predicts one protein chain once, please input 1-character chain I
     sc:name "GraphBind" ;
     sc:url "http://www.csbio.sjtu.edu.cn/bioinf/GraphBind/" .
 
+<https://bio.tools/graphchainer> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0080,
+        edam:topic_0654,
+        edam:topic_3297 ;
+    sc:citation <https://doi.org/10.1101/2022.01.07.475257> ;
+    sc:description "Chaining for Accurate Alignment of Erroneous Long Reads to Acyclic Variation Graphs." ;
+    sc:featureList edam:operation_0292,
+        edam:operation_0524,
+        edam:operation_3198,
+        edam:operation_3227 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "GraphChainer" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/algbio/GraphChainer" .
+
 <https://bio.tools/graphclust> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0099 ;
@@ -228569,7 +232304,7 @@ GraphBind only predicts one protein chain once, please input 1-character chain I
     sc:url "http://www.bioinf.uni-freiburg.de/Software/GraphClust/" .
 
 <https://bio.tools/graphcovidnet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_3384,
         edam:topic_3452,
@@ -228585,7 +232320,7 @@ GraphBind only predicts one protein chain once, please input 1-character chain I
     biotools:primaryContact <https://orcid.org/0000-0002-0106-7050> .
 
 <https://bio.tools/graphcrunch> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2259 ;
@@ -228602,7 +232337,7 @@ GraphBind only predicts one protein chain once, please input 1-character chain I
     sc:url "http://bio-nets.doc.ic.ac.uk/graphcrunch2/" .
 
 <https://bio.tools/graphdrp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3336,
         edam:topic_3373,
@@ -228618,7 +232353,7 @@ GraphBind only predicts one protein chain once, please input 1-character chain I
     sc:url "https://github.com/hauldhut/GraphDRP" .
 
 <https://bio.tools/graphdta> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0209,
@@ -228638,7 +232373,7 @@ GraphDTA post-hoc analysis scripts.""" ;
     sc:url "https://doi.org/10.5281/zenodo.3603523" .
 
 <https://bio.tools/graphdtl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_3293 ;
@@ -228654,7 +232389,7 @@ Given a , this program computes""" ;
     biotools:primaryContact "Céline Scornavacca" .
 
 <https://bio.tools/graphein> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0130,
@@ -228672,7 +232407,7 @@ This package provides functionality for producing a number of types of graph-bas
     sc:url "https://github.com/a-r-j/graphein" .
 
 <https://bio.tools/graphery> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0610,
@@ -228688,8 +232423,50 @@ This package provides functionality for producing a number of types of graph-bas
     sc:url "https://graphery.reedcompbio.org/" ;
     biotools:primaryContact <https://orcid.org/0000-0002-7925-5369> .
 
+<https://bio.tools/graphfp> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workbench" ;
+    sc:applicationSubCategory edam:topic_2229,
+        edam:topic_2269,
+        edam:topic_3170,
+        edam:topic_3308,
+        edam:topic_3318 ;
+    sc:citation <https://doi.org/10.1371/JOURNAL.PCBI.1009821>,
+        "pmcid:PMC8812873",
+        "pubmed:35073331" ;
+    sc:description "GraphFP:a dynamic inference software for reconstructing the cell state-transition complex energy landscape from time series single-cell transcriptomic data." ;
+    sc:featureList edam:operation_2426,
+        edam:operation_3432,
+        edam:operation_3450 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "GraphFP" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/QiJiang-QJ/GraphFP" .
+
+<https://bio.tools/graphgonet> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0089,
+        edam:topic_0203,
+        edam:topic_0625,
+        edam:topic_3474,
+        edam:topic_3577 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC147>,
+        "pubmed:35266505" ;
+    sc:description "A self-explaining neural network encapsulating the Gene Ontology graph for phenotype prediction on gene expression." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_2454,
+        edam:operation_3927 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Apache-2.0" ;
+    sc:name "GraphGONet" ;
+    sc:url "https://forge.ibisc.univ-evry.fr/vbourgeais/GraphGONet.git" .
+
 <https://bio.tools/graphgr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0625,
@@ -228708,18 +232485,18 @@ GraphGR is a tool to predict drug (kinase inhibitors ONLY for now) response on a
 
 <https://bio.tools/graphia> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ],
+            sc:additionalType "http://edamontology.org/data_3112" ;
+            sc:encodingFormat "http://edamontology.org/format_3620" ;
+            sc:name "Gene expression matrix" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3112" ;
-            sc:name "Gene expression matrix" ;
-            sc:sameAs "http://edamontology.org/data_3112" ] ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:encodingFormat "http://edamontology.org/format_3617" ;
+            sc:name "Pathway or network" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:encodingFormat "http://edamontology.org/format_3603" ;
+            sc:name "Pathway or network" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0092,
@@ -228753,7 +232530,7 @@ Graphia can create and visualise graphs from tables of numeric data and display
     sc:url "https://graphia.app/" .
 
 <https://bio.tools/graphite> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0085 ;
     sc:citation <https://doi.org/10.1186/1471-2105-13-20>,
@@ -228773,7 +232550,7 @@ Graphia can create and visualise graphs from tables of numeric data and display
     biotools:primaryContact "Chiara Romualdi" .
 
 <https://bio.tools/graphiteweb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -228795,7 +232572,7 @@ Graphia can create and visualise graphs from tables of numeric data and display
     biotools:primaryContact "Chiara Romualdi" .
 
 <https://bio.tools/graphkernels> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_2269,
@@ -228813,7 +232590,7 @@ Graphia can create and visualise graphs from tables of numeric data and display
     biotools:primaryContact "Mahito Sugiyama" .
 
 <https://bio.tools/graphlan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0194,
         edam:topic_3174,
@@ -228833,7 +232610,7 @@ Graphia can create and visualise graphs from tables of numeric data and display
     biotools:primaryContact "Nicola Segata" .
 
 <https://bio.tools/graphomics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0602,
@@ -228853,7 +232630,7 @@ GraphOmics is a dashboard to integrate and explore different types of biological
     sc:url "https://graphomics.glasgowcompbio.org/" .
 
 <https://bio.tools/graphpac> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0078,
@@ -228873,7 +232650,7 @@ GraphOmics is a dashboard to integrate and explore different types of biological
     biotools:primaryContact "Gregory Ryslik" .
 
 <https://bio.tools/graphprot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0099 ;
@@ -228889,7 +232666,7 @@ GraphOmics is a dashboard to integrate and explore different types of biological
     sc:url "http://www.bioinf.uni-freiburg.de/Software/GraphProt/" .
 
 <https://bio.tools/graphqa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0130,
         edam:topic_0154,
@@ -228905,8 +232682,31 @@ GraphOmics is a dashboard to integrate and explore different types of biological
     sc:name "GraphQA" ;
     sc:url "http://github.com/baldassarreFe/graphqa" .
 
+<https://bio.tools/graphreg> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0204,
+        edam:topic_0602,
+        edam:topic_0749,
+        edam:topic_3173,
+        edam:topic_3940 ;
+    sc:citation <https://doi.org/10.1101/GR.275870.121>,
+        "pmcid:PMC9104700",
+        "pubmed:35396274" ;
+    sc:description "Chromatin interaction-aware gene regulatory modeling with graph attention networks." ;
+    sc:featureList edam:operation_0438,
+        edam:operation_1781,
+        edam:operation_2437 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "GraphReg" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/karbalayghareh/GraphReg" .
+
 <https://bio.tools/graphregnet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_3384,
         edam:topic_3444,
@@ -228920,7 +232720,7 @@ GraphOmics is a dashboard to integrate and explore different types of biological
     sc:url "https://github.com/multimodallearning/graphregnet" .
 
 <https://bio.tools/graphrepur> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2640,
@@ -228938,7 +232738,7 @@ GraphOmics is a dashboard to integrate and explore different types of biological
     sc:url "https://github.com/cckamy/GraphRepur" .
 
 <https://bio.tools/graphsim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -228957,16 +232757,60 @@ Simulate Expression Data from 'igraph' Networks.""" ;
     sc:name "graphsim" ;
     sc:url "https://github.com/TomKellyGenetics/graphsim" .
 
+<https://bio.tools/graphsite> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application",
+        "Workbench" ;
+    sc:applicationSubCategory edam:topic_0082,
+        edam:topic_0128,
+        edam:topic_0736,
+        edam:topic_3125,
+        edam:topic_3534 ;
+    sc:citation <https://doi.org/10.1093/BIB/BBAB564>,
+        "pubmed:35039821" ;
+    sc:description "GraphSite is a novel framework for sequence-based protein-DNA binding site prediction using graph transformer and predicted protein structures from AlphaFold2." ;
+    sc:featureList edam:operation_0267,
+        edam:operation_0474,
+        edam:operation_2464,
+        edam:operation_3900,
+        edam:operation_3903 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "GraphSite" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://biomed.nscc-gz.cn/apps/GraphSite" .
+
+<https://bio.tools/graphtgi> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script",
+        "Workbench" ;
+    sc:applicationSubCategory edam:topic_0204,
+        edam:topic_0602,
+        edam:topic_0749,
+        edam:topic_3169,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1093/BIB/BBAC148>,
+        "pubmed:35511108" ;
+    sc:description "An attention-based graph embedding model for predicting TF-target gene interactions." ;
+    sc:featureList edam:operation_2437,
+        edam:operation_2454,
+        edam:operation_2575 ;
+    sc:license "Not licensed" ;
+    sc:name "GraphTGI" ;
+    sc:url "https://github.com/YanghanWu/GraphTGI" .
+
 <https://bio.tools/graphweb> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ] ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:encodingFormat "http://edamontology.org/format_3617" ;
+            sc:name "Pathway or network" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2984" ;
-            sc:name "Pathway or network report" ;
-            sc:sameAs "http://edamontology.org/data_2984" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2984" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Pathway or network report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0623,
@@ -228993,7 +232837,7 @@ Simulate Expression Data from 'igraph' Networks.""" ;
         "Laur Tooming" .
 
 <https://bio.tools/grapple> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_3511 ;
@@ -229010,7 +232854,7 @@ Simulate Expression Data from 'igraph' Networks.""" ;
     biotools:primaryContact "Liam Childs" .
 
 <https://bio.tools/grasp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0196,
@@ -229027,7 +232871,7 @@ Simulate Expression Data from 'igraph' Networks.""" ;
     sc:url "http://sourceforge.net/projects/grasp-release/" .
 
 <https://bio.tools/grasp-py> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3068,
         edam:topic_3474,
@@ -229043,29 +232887,55 @@ The discovery of protein-ligand-binding sites is a major step for elucidating pr
     sc:name "GRaSP-py" ;
     sc:url "https://github.com/charles-abreu/GRaSP" .
 
-<https://bio.tools/grass_carp_genomic_visualization_database> a sc:SoftwareApplication ;
-    sc:additionalType "Database portal" ;
-    sc:applicationSubCategory edam:topic_0102,
-        edam:topic_0196,
-        edam:topic_0621,
-        edam:topic_3170,
-        edam:topic_3320 ;
-    sc:citation <https://doi.org/10.7150/IJBS.32860>,
-        "pmcid:PMC6775296",
-        "pubmed:31592084" ;
-    sc:description """an informational platform for genome biology of grass carp.
+<https://bio.tools/grasp-web> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0130,
+        edam:topic_0209,
+        edam:topic_3047,
+        edam:topic_3474,
+        edam:topic_3534 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAC323>,
+        "pmcid:PMC9252730",
+        "pubmed:35524575" ;
+    sc:description "A machine learning strategy to predict binding sites based on residue neighborhood graphs." ;
+    sc:featureList edam:operation_0474,
+        edam:operation_1839,
+        edam:operation_2492,
+        edam:operation_2575,
+        edam:operation_4009 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "GRaSP-web" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/charles-abreu/GRaSP" .
 
-Grass carp (Ctenopharyngodon idellus) is a herbivorous, freshwater fish species of the family Cyprinidae, and the only species of the genus Ctenopharyngodon.""" ;
-    sc:featureList edam:operation_0282,
-        edam:operation_0283,
-        edam:operation_0464,
-        edam:operation_2422,
-        edam:operation_3208 ;
-    sc:name "grass carp genomic visualization database" ;
-    sc:url "http://www.ncgr.ac.cn/grasscarp/" .
+<https://bio.tools/grasr> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_2275,
+        edam:topic_2814,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1371/JOURNAL.PCBI.1009986>,
+        "pmcid:PMC8982879",
+        "pubmed:35324898" ;
+    sc:description "Fast protein structure comparison through effective representation learning with contrastive graph neural networks." ;
+    sc:featureList edam:operation_0295,
+        edam:operation_0303,
+        edam:operation_2487,
+        edam:operation_3899 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Apache-2.0" ;
+    sc:name "GraSR" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://www.csbio.sjtu.edu.cn/bioinf/GraSR/" .
 
 <https://bio.tools/grasviq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0780,
         edam:topic_3298,
@@ -229082,7 +232952,7 @@ Grass carp (Ctenopharyngodon idellus) is a herbivorous, freshwater fish species
     biotools:primaryContact <https://orcid.org/0000-0001-5319-5751> .
 
 <https://bio.tools/grate> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0637,
@@ -229098,7 +232968,7 @@ Grass carp (Ctenopharyngodon idellus) is a herbivorous, freshwater fish species
     biotools:primaryContact "Kai Müller" .
 
 <https://bio.tools/grcalculator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0209,
@@ -229118,7 +232988,7 @@ Grass carp (Ctenopharyngodon idellus) is a herbivorous, freshwater fish species
     biotools:primaryContact "Nicholas A. Clark" .
 
 <https://bio.tools/gre4zn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2814,
         edam:topic_3534 ;
@@ -229134,7 +233004,7 @@ Grass carp (Ctenopharyngodon idellus) is a herbivorous, freshwater fish species
     biotools:primaryContact "Haiyan Liu" .
 
 <https://bio.tools/gream> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0157,
@@ -229152,8 +233022,30 @@ Grass carp (Ctenopharyngodon idellus) is a herbivorous, freshwater fish species
     sc:url "http://resource.ibab.ac.in/GREAM/" ;
     biotools:primaryContact "Kshitish K. Acharya" .
 
+<https://bio.tools/greap> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0622,
+        edam:topic_0749,
+        edam:topic_3295 ;
+    sc:citation <https://doi.org/10.1093/BIB/BBAC329>,
+        "pubmed:35959979" ;
+    sc:description "A comprehensive enrichment analysis software for human genomic regions." ;
+    sc:featureList edam:operation_0362,
+        edam:operation_3208,
+        edam:operation_3501 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Other" ;
+    sc:name "GREAP" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <http://www.liclab.net/Greap/view/help> ;
+    sc:url "http://www.liclab.net/Greap/view/index" .
+
 <https://bio.tools/great> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0659 ;
     sc:citation <https://doi.org/10.1038/nbt.1630> ;
@@ -229168,26 +233060,25 @@ Grass carp (Ctenopharyngodon idellus) is a herbivorous, freshwater fish species
 
 <https://bio.tools/greatscanmultipatterns> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1016" ;
-            sc:name "Sequence position" ;
-            sc:sameAs "http://edamontology.org/data_1016" ],
+            sc:additionalType "http://edamontology.org/data_1016" ;
+            sc:encodingFormat "http://edamontology.org/format_1964" ;
+            sc:name "Sequence position" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2755" ;
-            sc:name "Transcription factor name" ;
-            sc:sameAs "http://edamontology.org/data_2755" ],
+            sc:additionalType "http://edamontology.org/data_2755" ;
+            sc:encodingFormat "http://edamontology.org/format_1964" ;
+            sc:name "Transcription factor name" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1893" ;
-            sc:name "Locus ID" ;
-            sc:sameAs "http://edamontology.org/data_1893" ] ;
+            sc:additionalType "http://edamontology.org/data_1893" ;
+            sc:encodingFormat "http://edamontology.org/format_1964" ;
+            sc:name "Locus ID" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ],
+            sc:additionalType "http://edamontology.org/data_1772" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Score" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1772" ;
-            sc:name "Score" ;
-            sc:sameAs "http://edamontology.org/data_1772" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -229210,22 +233101,21 @@ Grass carp (Ctenopharyngodon idellus) is a herbivorous, freshwater fish species
 
 <https://bio.tools/greatscanpatterns> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1893" ;
-            sc:name "Locus ID" ;
-            sc:sameAs "http://edamontology.org/data_1893" ],
+            sc:additionalType "http://edamontology.org/data_1893" ;
+            sc:encodingFormat "http://edamontology.org/format_1964" ;
+            sc:name "Locus ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1016" ;
-            sc:name "Sequence position" ;
-            sc:sameAs "http://edamontology.org/data_1016" ] ;
+            sc:additionalType "http://edamontology.org/data_1016" ;
+            sc:encodingFormat "http://edamontology.org/format_1964" ;
+            sc:name "Sequence position" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ],
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:name "Plot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1772" ;
-            sc:name "Score" ;
-            sc:sameAs "http://edamontology.org/data_1772" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1772" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Score" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -229249,7 +233139,7 @@ Grass carp (Ctenopharyngodon idellus) is a herbivorous, freshwater fish species
     biotools:primaryContact "MEGA team" .
 
 <https://bio.tools/greedy-algorithm-set-cover-problem> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3315,
@@ -229266,7 +233156,7 @@ Grass carp (Ctenopharyngodon idellus) is a herbivorous, freshwater fish species
     biotools:primaryContact "Fabio Gori" .
 
 <https://bio.tools/greedyrfs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0194 ;
@@ -229281,7 +233171,7 @@ GreedyRFS is a heuristic method developed for the Robinson-Foulds Supertree prob
     sc:url "http://github.com/yuxilin51/GreedyRFS" .
 
 <https://bio.tools/green-db> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0622,
@@ -229304,7 +233194,7 @@ Genomic Regulatory Elements ENcyclopedia Database A collection of ~2.4M regulato
     sc:url "https://github.com/edg1983/GREEN-VARAN" .
 
 <https://bio.tools/green_algorithms> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0218,
         edam:topic_3318,
@@ -229323,8 +233213,31 @@ Genomic Regulatory Elements ENcyclopedia Database A collection of ~2.4M regulato
         "Windows" ;
     sc:url "http://www.green-algorithms.org" .
 
+<https://bio.tools/greenc> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Database portal" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0623,
+        edam:topic_0659,
+        edam:topic_0780 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAB1014>,
+        "pmcid:PMC8728176",
+        "pubmed:34723326" ;
+    sc:description "A comprehensive database of plant long non-coding RNAs." ;
+    sc:featureList edam:operation_0291,
+        edam:operation_2422,
+        edam:operation_3792 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "GreeNC" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://greenc.sequentiabiotech.com/wiki2/Main_Page" .
+
 <https://bio.tools/greencircrna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_0780,
@@ -229345,20 +233258,39 @@ A Wiki-database of plant CircRNAs(v1.0).""" ;
     sc:name "GreenCircRNA" ;
     sc:url "http://greencirc.cn" .
 
+<https://bio.tools/greeningdb> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0080,
+        edam:topic_0121,
+        edam:topic_0602,
+        edam:topic_0780,
+        edam:topic_3957 ;
+    sc:citation <https://doi.org/10.3390/IJMS221910897>,
+        "pmcid:PMC8509195",
+        "pubmed:34639237" ;
+    sc:description "A Database of Host-Pathogen Protein-Protein Interactions and Annotation Features of the Bacteria Causing Huanglongbing HLB Disease." ;
+    sc:featureList edam:operation_2421,
+        edam:operation_2422,
+        edam:operation_3925 ;
+    sc:isAccessibleForFree true ;
+    sc:name "GreeningDB" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://bioinfo.usu.edu/GreeningDB/" .
+
 <https://bio.tools/greenphyldb> a sc:SoftwareApplication ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0857" ;
-            sc:name "Sequence search results" ;
-            sc:sameAs "http://edamontology.org/data_0857" ],
+            sc:additionalType "http://edamontology.org/data_0872" ;
+            sc:name "Phylogenetic tree" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3154" ;
-            sc:name "Protein alignment" ;
-            sc:sameAs "http://edamontology.org/data_3154" ],
+            sc:additionalType "http://edamontology.org/data_3154" ;
+            sc:name "Protein alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0872" ;
-            sc:name "Phylogenetic tree" ;
-            sc:sameAs "http://edamontology.org/data_0872" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0857" ;
+            sc:name "Sequence search results" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0623,
@@ -229382,7 +233314,7 @@ A Wiki-database of plant CircRNAs(v1.0).""" ;
     biotools:primaryContact <https://orcid.org/0000-0003-0284-1885> .
 
 <https://bio.tools/greg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0602,
@@ -229404,7 +233336,7 @@ Scripts related to GREG (Gene Regulation Graph Database) and its papers. Use GRE
     sc:url "https://mora-lab.github.io/projects/greg.html" .
 
 <https://bio.tools/gregor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3053,
@@ -229420,7 +233352,7 @@ Scripts related to GREG (Gene Regulation Graph Database) and its papers. Use GRE
     biotools:primaryContact "Cristen Willer" .
 
 <https://bio.tools/grema> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0602,
@@ -229438,22 +233370,22 @@ GREMA (Gene networks Reconstruction using Evolutionary Modelling Algorithm) is a
 
 <https://bio.tools/grenits> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0928" ;
-            sc:name "Gene expression profile" ;
-            sc:sameAs "http://edamontology.org/data_0928" ] ;
+            sc:additionalType "http://edamontology.org/data_0928" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Gene expression profile" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ],
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Plot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ],
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1772" ;
-            sc:name "Score" ;
-            sc:sameAs "http://edamontology.org/data_1772" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1772" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Score" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0204,
@@ -229474,14 +233406,14 @@ GREMA (Gene networks Reconstruction using Evolutionary Modelling Algorithm) is a
 
 <https://bio.tools/grep_count> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3511 ;
     sc:citation <https://doi.org/10.1093/nar/gkw343>,
@@ -229497,7 +233429,7 @@ GREMA (Gene networks Reconstruction using Evolutionary Modelling Algorithm) is a
     biotools:primaryContact "Galaxy Support Team" .
 
 <https://bio.tools/gretel> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_2885,
@@ -229519,18 +233451,18 @@ Gretel is a Python package providing a command line tool for the recovery of hap
 
 <https://bio.tools/greylag> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ],
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Mass spectrometry spectra" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0850" ;
-            sc:name "Sequence set" ;
-            sc:sameAs "http://edamontology.org/data_0850" ] ;
+            sc:additionalType "http://edamontology.org/data_0850" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence set" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_3758" ;
+            sc:name "Peptide identification" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -229544,14 +233476,14 @@ Gretel is a Python package providing a command line tool for the recovery of hap
 
 <https://bio.tools/greylistchip> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_3003" ;
+            sc:name "Annotation track" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2640,
@@ -229570,7 +233502,7 @@ Gretel is a Python package providing a command line tool for the recovery of hap
     biotools:primaryContact "Gordon Brown" .
 
 <https://bio.tools/grgmf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0634,
@@ -229588,7 +233520,7 @@ This code is the implementation of GRGMF, which is both CPU and CUDA compatible(
     sc:url "https://github.com/happyalfred2016/GRGMF" .
 
 <https://bio.tools/grgnn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -229607,7 +233539,7 @@ Gene regulatory graph neural network (GRGNN): an end-to-end approach to reconstr
     sc:url "https://github.com/juexinwang/GRGNN" .
 
 <https://bio.tools/grid-based-modeling-images> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -229624,7 +233556,7 @@ Gene regulatory graph neural network (GRGNN): an end-to-end approach to reconstr
     biotools:primaryContact "Reza Farrahi Moghaddam" .
 
 <https://bio.tools/grid-intersections> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -229640,7 +233572,7 @@ Gene regulatory graph neural network (GRGNN): an end-to-end approach to reconstr
     biotools:primaryContact "Kevin Rogers" .
 
 <https://bio.tools/grid_map> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0654 ;
@@ -229654,28 +233586,30 @@ Gene regulatory graph neural network (GRGNN): an end-to-end approach to reconstr
     sc:softwareVersion "3.0a-beta" ;
     sc:url "http://cbr.jic.ac.uk/dicks/software/Grid_Map/index.html" .
 
-<https://bio.tools/gridded_population_survey_sampling> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0102,
-        edam:topic_3305,
-        edam:topic_3474 ;
-    sc:citation <https://doi.org/10.20944/PREPRINTS201911.0072.V1> ;
-    sc:description """A Review of the Field and Strategic Research Agenda.
-
-GRID3 (Geo-Referenced Infrastructure and Demographic Data for Development) works with countries to generate, validate and use geospatial data.
-
-Mapping a path to sustainable development for everyone.
-
-To build spatial data solutions that make development goals achievable.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'GridSample'""" ;
-    sc:featureList edam:operation_3359,
-        edam:operation_3432,
-        edam:operation_3659 ;
-    sc:name "gridded population survey sampling" ;
-    sc:url "http://www.grid3.org/" .
+<https://bio.tools/griddingmachine> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Library" ;
+    sc:applicationSubCategory edam:topic_0610,
+        edam:topic_0780,
+        edam:topic_3306 ;
+    sc:citation <https://doi.org/10.1038/S41597-022-01346-X>,
+        "pmcid:PMC9160223",
+        "pubmed:35650204" ;
+    sc:description "Database and software for Earth system modeling at global and regional scales." ;
+    sc:featureList edam:operation_2422,
+        edam:operation_3435,
+        edam:operation_3946 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Apache-2.0" ;
+    sc:name "GriddingMachine" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/Yujie-W/octave-griddingmachine" .
 
 <https://bio.tools/gridfree> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3382,
@@ -229691,7 +233625,7 @@ Grain characteristics are critical component traits for grain yield, including k
     sc:url "https://zzlab.net/GridFree" .
 
 <https://bio.tools/gridmos> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3361,
@@ -229712,8 +233646,28 @@ Grain characteristics are critical component traits for grain yield, including k
         "GiuliaPaganelli",
         "WainerZoli" .
 
+<https://bio.tools/gridscore> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0091,
+        edam:topic_0625,
+        edam:topic_0780,
+        edam:topic_3077,
+        edam:topic_3810 ;
+    sc:citation <https://doi.org/10.1186/S12859-022-04755-2>,
+        "pmcid:PMC9169276",
+        "pubmed:35668357" ;
+    sc:description "A tool for accurate, cross-platform phenotypic data collection and visualization." ;
+    sc:featureList edam:operation_0337 ;
+    sc:isAccessibleForFree true ;
+    sc:name "GridScore" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://ics.hutton.ac.uk/gridscore/" .
+
 <https://bio.tools/gridsolvate> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2275,
         edam:topic_2814,
@@ -229734,18 +233688,18 @@ The gridSolvate program predicts the distribution of hydration sites within prot
 
 <https://bio.tools/gridss> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0925" ;
-            sc:name "Sequence assembly" ;
-            sc:sameAs "http://edamontology.org/data_0925" ],
+            sc:additionalType "http://edamontology.org/data_1383" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Sequence alignment (nucleic acid)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1383" ;
-            sc:name "Sequence alignment (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1383" ] ;
+            sc:additionalType "http://edamontology.org/data_0925" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence assembly" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3671" ;
-            sc:name "Text" ;
-            sc:sameAs "http://edamontology.org/data_3671" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3671" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Text" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0122,
         edam:topic_3175 ;
@@ -229764,7 +233718,7 @@ The gridSolvate program predicts the distribution of hydration sites within prot
     biotools:primaryContact "Australia" .
 
 <https://bio.tools/griffin> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3474 ;
@@ -229778,7 +233732,7 @@ The gridSolvate program predicts the distribution of hydration sites within prot
     sc:url "http://griffin.cbrc.jp/" .
 
 <https://bio.tools/grimer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0637,
         edam:topic_3068,
@@ -229796,7 +233750,7 @@ The gridSolvate program predicts the distribution of hydration sites within prot
     sc:url "https://gitlab.com/dacs-hpi/grimer" .
 
 <https://bio.tools/grimoirelab> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_3168,
         edam:topic_3372,
@@ -229815,7 +233769,7 @@ The gridSolvate program predicts the distribution of hydration sites within prot
     sc:url "https://github.com/chaoss/grimoirelab-elk" .
 
 <https://bio.tools/grinch> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0749,
@@ -229834,7 +233788,7 @@ The gridSolvate program predicts the distribution of hydration sites within prot
     sc:url "http://roy-lab.github.io/grinch" .
 
 <https://bio.tools/grindb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0199,
@@ -229854,7 +233808,7 @@ A CURATED DATABASE FOR GRIN VARIANTS.""" ;
     sc:url "http://lmc.uab.es/grindb" .
 
 <https://bio.tools/grinn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0130,
         edam:topic_0602 ;
@@ -229872,8 +233826,32 @@ A CURATED DATABASE FOR GRIN VARIANTS.""" ;
     biotools:primaryContact "Onur Serçinoğlu",
         "Pemra Ozbek" .
 
+<https://bio.tools/griottes> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0769,
+        edam:topic_2229,
+        edam:topic_3382,
+        edam:topic_3474,
+        edam:topic_3934 ;
+    sc:citation <https://doi.org/10.1186/S12915-022-01376-2>,
+        "pmcid:PMC9367069",
+        "pubmed:35953853" ;
+    sc:description "a generalist tool for network generation from segmented tissue images." ;
+    sc:featureList edam:operation_2940,
+        edam:operation_3435,
+        edam:operation_3443 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "Griottes" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://griottes.readthedocs.io/en/latest/> ;
+    sc:url "https://github.com/BaroudLab/Griottes" .
+
 <https://bio.tools/grip> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0153,
@@ -229894,7 +233872,7 @@ Input a target sequence in FASTA format.""" ;
     sc:url "http://grip.b.dendai.ac.jp/~grip/" .
 
 <https://bio.tools/grisli> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0602,
@@ -229915,7 +233893,7 @@ Single-cell RNA sequencing (scRNA-seq) offers new possibilities to infer gene re
     sc:url "https://github.com/PCAubin/GRISLI" .
 
 <https://bio.tools/grisotto> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654 ;
@@ -229930,7 +233908,7 @@ Single-cell RNA sequencing (scRNA-seq) offers new possibilities to infer gene re
     sc:url "http://www.lx.it.pt/~asmc/software/grisotto.html" .
 
 <https://bio.tools/grit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3170,
@@ -229947,7 +233925,7 @@ Single-cell RNA sequencing (scRNA-seq) offers new possibilities to infer gene re
         "Susan E Celniker" .
 
 <https://bio.tools/grk1> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0622,
@@ -229967,7 +233945,7 @@ G protein-coupled receptor kinase 1 (GRK1).""" ;
     sc:url "http://dna2.leeds.ac.uk/GRK1_LOVD/genes/GRK1" .
 
 <https://bio.tools/grm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2269,
@@ -229983,7 +233961,7 @@ G protein-coupled receptor kinase 1 (GRK1).""" ;
     biotools:primaryContact "Wei Wang" .
 
 <https://bio.tools/grmetrics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2229,
@@ -230002,7 +233980,7 @@ G protein-coupled receptor kinase 1 (GRK1).""" ;
     biotools:primaryContact "Nicholas Clark" .
 
 <https://bio.tools/grmt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0199,
@@ -230023,8 +234001,28 @@ G protein-coupled receptor kinase 1 (GRK1).""" ;
     sc:operatingSystem "Linux" ;
     sc:url "https://github.com/qasimyu/grmt" .
 
+<https://bio.tools/grnbenchmark> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0602,
+        edam:topic_0749,
+        edam:topic_2269 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAC377>,
+        "pmcid:PMC9252735",
+        "pubmed:35609981" ;
+    sc:description "A web server for benchmarking directed gene regulatory network inference methods." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3435,
+        edam:operation_3566 ;
+    sc:license "Not licensed" ;
+    sc:name "GRNbenchmark" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://GRNbenchmark.org/" .
+
 <https://bio.tools/grndb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -230045,7 +234043,7 @@ Gene regulatory networks are crucial for understanding the mechanism of gene exp
     sc:url "http://www.grndb.com/" .
 
 <https://bio.tools/grnsight> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0602 ;
@@ -230082,13 +234080,13 @@ Gene regulatory networks are crucial for understanding the mechanism of gene exp
     sc:provider "Loyola Marymount University",
         "lmu.edu" ;
     sc:softwareHelp <http://dondi.github.io/GRNsight/documentation.html> ;
-    sc:softwareVersion "5.1.0" ;
+    sc:softwareVersion "6.0.0" ;
     sc:url "http://dondi.github.io/GRNsight/" ;
     biotools:primaryContact "John David N. Dionisio",
         "Kam D. Dahlquist" .
 
 <https://bio.tools/grnular> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0749,
@@ -230108,7 +234106,7 @@ Explore the notebook folder for a quick overview of the GRNUlar algorithm ran on
     sc:url "https://github.com/Harshs27/GRNUlar" .
 
 <https://bio.tools/gro2mat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0176,
         edam:topic_3071,
@@ -230126,14 +234124,14 @@ Explore the notebook folder for a quick overview of the GRNUlar algorithm ran on
 
 <https://bio.tools/groc-svs> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2337" ;
-            sc:name "Resource metadata" ;
-            sc:sameAs "http://edamontology.org/data_2337" ] ;
+            sc:additionalType "http://edamontology.org/data_2337" ;
+            sc:encodingFormat "http://edamontology.org/format_3464" ;
+            sc:name "Resource metadata" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2955" ;
-            sc:name "Sequence report" ;
-            sc:sameAs "http://edamontology.org/data_2955" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2955" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Sequence report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3168,
@@ -230153,30 +234151,30 @@ Explore the notebook folder for a quick overview of the GRNUlar algorithm ran on
 
 <https://bio.tools/grohmm> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ],
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_3003" ;
+            sc:name "Annotation track" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_3003" ;
+            sc:name "Sequence alignment" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ],
+            sc:additionalType "http://edamontology.org/data_1017" ;
+            sc:encodingFormat "http://edamontology.org/format_3006" ;
+            sc:name "Sequence range" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1017" ;
-            sc:name "Sequence range" ;
-            sc:sameAs "http://edamontology.org/data_1017" ],
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_3006" ;
+            sc:name "Report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ],
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3006" ;
+            sc:name "Plot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_3006" ;
+            sc:name "Annotation track" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3168,
@@ -230202,7 +234200,7 @@ Explore the notebook folder for a quick overview of the GRNUlar algorithm ran on
         "W. Lee Kraus" .
 
 <https://bio.tools/grok> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0622,
@@ -230221,15 +234219,28 @@ Explore the notebook folder for a quick overview of the GRNUlar algorithm ran on
 
 <https://bio.tools/gromacs> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0883" ;
-            sc:name "Structure" ;
-            sc:sameAs "http://edamontology.org/data_0883" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0883" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Structure" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library",
         "Suite" ;
     sc:applicationSubCategory edam:topic_0176 ;
-    sc:citation <https://doi.org/10.1016/j.softx.2015.06.001> ;
+    sc:citation <https://doi.org/10.1002/jcc.20291>,
+        <https://doi.org/10.1002/jcc.24030>,
+        <https://doi.org/10.1002/jcc.26011>,
+        <https://doi.org/10.1007/978-3-319-15976-8_1>,
+        <https://doi.org/10.1007/s008940100045>,
+        <https://doi.org/10.1016/0010-4655(95)00042-E>,
+        <https://doi.org/10.1016/j.softx.2015.06.001>,
+        <https://doi.org/10.1021/ct700301q>,
+        <https://doi.org/10.1063/5.0018516>,
+        <https://doi.org/10.1093/bioinformatics/btt055>,
+        "pubmed:16211538",
+        "pubmed:23407358",
+        "pubmed:26620784",
+        "pubmed:33032406" ;
     sc:description "Versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles. It is primarily designed for biochemical molecules like proteins, lipids and nucleic acids that have a lot of complicated bonded interactions, but since it is extremely fast at calculating the nonbonded interactions (that usually dominate simulations) many groups are also using it for research on non-biological systems, e.g. polymers." ;
     sc:featureList edam:operation_2476 ;
     sc:isAccessibleForFree true ;
@@ -230241,7 +234252,7 @@ Explore the notebook folder for a quick overview of the GRNUlar algorithm ran on
     biotools:primaryContact "GROMACS support" .
 
 <https://bio.tools/gronor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -230255,7 +234266,7 @@ GronOR started in 2016 as a collaboration of the Theoretical Chemistry group of
     sc:url "http://gronor.org" .
 
 <https://bio.tools/groopm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3174 ;
@@ -230272,7 +234283,7 @@ GronOR started in 2016 as a collaboration of the Theoretical Chemistry group of
     biotools:primaryContact "Mike Imelfort" .
 
 <https://bio.tools/groot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3174,
@@ -230288,7 +234299,7 @@ GronOR started in 2016 as a collaboration of the Theoretical Chemistry group of
     biotools:primaryContact "Will P M Rowe" .
 
 <https://bio.tools/gropt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3068,
         edam:topic_3444,
@@ -230304,29 +234315,8 @@ OpenMP version of TE finder is better implemented. See demo in the test_TE_finde
     sc:name "GrOpt" ;
     sc:url "http://www.github.com/cmr-group/gropt" .
 
-<https://bio.tools/group18> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0121,
-        edam:topic_0202,
-        edam:topic_0593,
-        edam:topic_2275,
-        edam:topic_3534 ;
-    sc:citation <https://doi.org/10.1021/ACS.JCIM.9B00640>,
-        "pubmed:31613613" ;
-    sc:description """Massive in Silico Study of Noble Gas Binding to the Structural Proteome.
-
-Noble gases are chemically inert, and it was therefore thought they would have little effect on biology. Paradoxically, it was found that they do exhibit a wide range of biological effects, many of which are target-specific and potentially useful and some of which have been demonstrated in vivo. The underlying mechanisms by which useful pharmacology, such as tissue and neuroprotection, anti-addiction effects, and analgesia, is elicited are relatively unexplored. Experiments to probe the interactions of noble gases with specific proteins are more difficult with gases than those with other chemicals.
-
-||| COMMON LINK WITH (PUB. & NAME DIFFERENT) bio.tools/harman (CSIRO.AU), bio.tools/tilehmm (CSIRO.AU), bio.tools/k-link (CSIRO.AU), bio.tools/blue (CSIRO.AU).
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'noble gases', 'gases', 'noble', 'gas-protein'""" ;
-    sc:featureList edam:operation_0482,
-        edam:operation_2575,
-        edam:operation_3899 ;
-    sc:name "group18" ;
-    sc:url "http://group18.csiro.au" .
-
 <https://bio.tools/groupedSurv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0208,
         edam:topic_0625,
@@ -230350,7 +234340,7 @@ Noble gases are chemically inert, and it was therefore thought they would have l
         "Jiaxing Lin" .
 
 <https://bio.tools/grouped_fdr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_2269,
@@ -230367,7 +234357,7 @@ Noble gases are chemically inert, and it was therefore thought they would have l
     biotools:primaryContact "Bernie Devlin" .
 
 <https://bio.tools/grouper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0102,
@@ -230384,7 +234374,7 @@ Noble gases are chemically inert, and it was therefore thought they would have l
     biotools:primaryContact "Rob Patro" .
 
 <https://bio.tools/groupregnet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3303,
         edam:topic_3318,
@@ -230400,7 +234390,7 @@ Noble gases are chemically inert, and it was therefore thought they would have l
     sc:url "https://github.com/vincentme/GroupRegNet" .
 
 <https://bio.tools/grrann> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_3474 ;
@@ -230416,7 +234406,7 @@ Noble gases are chemically inert, and it was therefore thought they would have l
     biotools:primaryContact "Kourosh Zarringhalam" .
 
 <https://bio.tools/grridge> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -230438,7 +234428,7 @@ Noble gases are chemically inert, and it was therefore thought they would have l
     biotools:primaryContact "Mark A. van de Wiel" .
 
 <https://bio.tools/grs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation "pubmed:21266471" ;
@@ -230449,7 +234439,7 @@ Noble gases are chemically inert, and it was therefore thought they would have l
     sc:url "http://gmdd.shgmo.org/Computational-Biology/GRS" .
 
 <https://bio.tools/grtools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_2815,
@@ -230468,7 +234458,7 @@ Noble gases are chemically inert, and it was therefore thought they would have l
     biotools:primaryContact "Fabian A. Soto" .
 
 <https://bio.tools/grunifai> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
@@ -230490,7 +234480,7 @@ In its current form grünifai is commposed of multiple microservices. We recomme
     sc:url "https://github.com/jrwnter/gruenifai" .
 
 <https://bio.tools/gs-align> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0152 ;
@@ -230507,7 +234497,7 @@ In its current form grünifai is commposed of multiple microservices. We recomme
         "Sandor Vajda" .
 
 <https://bio.tools/gs-aligner> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1093/molbev/msg139> ;
@@ -230522,7 +234512,7 @@ In its current form grünifai is commposed of multiple microservices. We recomme
     sc:url "http://biocomp.iis.sinica.edu.tw/new/index.php" .
 
 <https://bio.tools/gs-lage> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3489 ;
@@ -230537,7 +234527,7 @@ In its current form grünifai is commposed of multiple microservices. We recomme
     sc:url "http://lage.sookmyung.ac.kr/" .
 
 <https://bio.tools/gs-preprocess> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0632,
         edam:topic_0769,
@@ -230557,7 +234547,7 @@ Sample Bioconductor GUIDEseq Input.""" ;
     sc:url "http://github.com/umasstr/GS-Preprocess" .
 
 <https://bio.tools/gs3> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2885,
         edam:topic_3053 ;
@@ -230572,7 +234562,7 @@ Sample Bioconductor GUIDEseq Input.""" ;
     sc:url "https://github.com/alegarra/gs3" .
 
 <https://bio.tools/gsa-snp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0199,
@@ -230596,8 +234586,29 @@ Sample Bioconductor GUIDEseq Input.""" ;
     sc:url "http://gsa.muldas.org" ;
     biotools:primaryContact "Prof. Sangsoo Kim" .
 
+<https://bio.tools/gsa_central> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0602,
+        edam:topic_0659,
+        edam:topic_3941 ;
+    sc:citation <https://doi.org/10.3389/FMED.2022.965908>,
+        "pmcid:PMC9403262",
+        "pubmed:36035404" ;
+    sc:description "A web platform to perform, learn, and discuss gene set analysis" ;
+    sc:featureList edam:operation_2421,
+        edam:operation_2436,
+        edam:operation_3928 ;
+    sc:license "Other" ;
+    sc:name "GSA Central" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://gsa-central.github.io/education.html" .
+
 <https://bio.tools/gsaa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0625,
@@ -230615,7 +234626,7 @@ Sample Bioconductor GUIDEseq Input.""" ;
     biotools:primaryContact "qxiong@email.unc.edu" .
 
 <https://bio.tools/gsad> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0610,
         edam:topic_0625,
@@ -230633,7 +234644,7 @@ Genome Size in Asteraceae database.""" ;
     sc:url "http://www.asteraceaegenomesize.com" .
 
 <https://bio.tools/gsalightning> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -230653,7 +234664,7 @@ Genome Size in Asteraceae database.""" ;
     biotools:primaryContact "Billy Heung Wing Chang" .
 
 <https://bio.tools/gsalign> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0081,
@@ -230680,26 +234691,26 @@ Personal genomics and comparative genomics are two fields that are more and more
 
 <https://bio.tools/gsar> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0928" ;
-            sc:name "Gene expression profile" ;
-            sc:sameAs "http://edamontology.org/data_0928" ] ;
+            sc:additionalType "http://edamontology.org/data_0928" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Gene expression profile" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ],
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Plot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ],
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1669" ;
-            sc:name "P-value" ;
-            sc:sameAs "http://edamontology.org/data_1669" ],
+            sc:additionalType "http://edamontology.org/data_1669" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "P-value" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Pathway or network" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -230724,7 +234735,7 @@ Personal genomics and comparative genomics are two fields that are more and more
         "Yasir Rahmatallah" .
 
 <https://bio.tools/gsc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3305,
@@ -230742,7 +234753,7 @@ BACKGROUND:Although survival statistics in patients with glioblastoma multiforme
     sc:url "https://cnoc-bwh.shinyapps.io/gbmsurvivalpredictor/" .
 
 <https://bio.tools/gsca> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -230763,7 +234774,7 @@ BACKGROUND:Although survival statistics in patients with glioblastoma multiforme
     biotools:primaryContact "Zhicheng Ji" .
 
 <https://bio.tools/gsda> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -230785,7 +234796,7 @@ BACKGROUND:Although survival statistics in patients with glioblastoma multiforme
     biotools:primaryContact <https://orcid.org/0000-0002-9167-2114> .
 
 <https://bio.tools/gsdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0122,
@@ -230807,7 +234818,7 @@ GSDB : Genome Structure Database.""" ;
     sc:url "http://sysbio.rnet.missouri.edu/3dgenome/GSDB" .
 
 <https://bio.tools/gsds> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0114,
         edam:topic_3053,
@@ -230825,7 +234836,7 @@ GSDB : Genome Structure Database.""" ;
     biotools:primaryContact "Hu Bo" .
 
 <https://bio.tools/gse> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0749,
@@ -230846,12 +234857,16 @@ GSDB : Genome Structure Database.""" ;
         "Tim Danford" .
 
 <https://bio.tools/gsea> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203 ;
-    sc:citation <https://doi.org/10.1073/pnas.0506580102> ;
+    sc:citation <https://doi.org/10.1038/ng1180>,
+        <https://doi.org/10.1073/pnas.0506580102>,
+        "pmcid:PMC1239896",
+        "pubmed:12808457",
+        "pubmed:16199517" ;
     sc:description "Computational method that determines whether an a priori defined set of genes shows statistically significant, concordant differences between two biological states (e.g. phenotypes)." ;
     sc:featureList edam:operation_2495,
         edam:operation_3223,
@@ -230864,7 +234879,7 @@ GSDB : Genome Structure Database.""" ;
     sc:url "http://www.broadinstitute.org/gsea/index.jsp" .
 
 <https://bio.tools/gsea2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_3053 ;
@@ -230880,7 +234895,7 @@ GSDB : Genome Structure Database.""" ;
     biotools:primaryContact "Wei Keat Lim" .
 
 <https://bio.tools/gseabase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203 ;
@@ -230899,7 +234914,7 @@ GSDB : Genome Structure Database.""" ;
     biotools:primaryContact "BioConductor Package Maintainer" .
 
 <https://bio.tools/gseabenchmarker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -230920,7 +234935,7 @@ GSDB : Genome Structure Database.""" ;
     biotools:primaryContact "Ludwig Geistlinger" .
 
 <https://bio.tools/gsealm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -230939,7 +234954,7 @@ GSDB : Genome Structure Database.""" ;
     biotools:primaryContact "Assaf Oron" .
 
 <https://bio.tools/gsean> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -230959,7 +234974,7 @@ GSDB : Genome Structure Database.""" ;
     biotools:primaryContact "Dongmin Jung" .
 
 <https://bio.tools/gsearch> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3673 ;
     sc:citation "pubmed:22730434" ;
@@ -230975,7 +234990,7 @@ GSDB : Genome Structure Database.""" ;
         "Taemin Song" .
 
 <https://bio.tools/gseca> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -231000,7 +235015,7 @@ GSECA is a R application with a Shiny web interface. The stand-alone version can
     sc:url "https://github.com/matteocereda/GSECA" .
 
 <https://bio.tools/gsim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203 ;
     sc:description "GSIM (Gene Expression Simulator) is a C program which simulates gene expression microarray data. It will generate distributions for any number of genes and use those distributions to generate intensities for any number of replicates. It generates two-class data and any number of the genes can be chosen to be differentially expressed. The program is very flexible and the parameters of the differentially expressed genes can be set by the user." ;
@@ -231014,7 +235029,7 @@ GSECA is a R application with a Shiny web interface. The stand-alone version can
     sc:url "http://www.cbil.upenn.edu/expression_simulator/" .
 
 <https://bio.tools/gsl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:description "The GNU Scientific Library (GSL) is a numerical library for C and C++ programmers." ;
     sc:license "GPL-3.0" ;
@@ -231022,28 +235037,46 @@ GSECA is a R application with a Shiny web interface. The stand-alone version can
     sc:softwareHelp <https://www.gnu.org/software/gsl/doc/latex/gsl-ref.pdf> ;
     sc:url "https://www.gnu.org/software/gsl/" .
 
+<https://bio.tools/gslrda> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0659,
+        edam:topic_3373,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1021/ACS.JCIM.2C00367>,
+        "pubmed:35838124" ;
+    sc:description "Graph Neural Network with Self-Supervised Learning for Noncoding RNA-Drug Resistance Association Prediction." ;
+    sc:featureList edam:operation_3927 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "GSLRDA" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/JJZ-code/GSLRDA" .
+
 <https://bio.tools/gsnap> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0622,
@@ -231072,7 +235105,7 @@ GSECA is a R application with a Shiny web interface. The stand-alone version can
     biotools:primaryContact "Thomas Wu" .
 
 <https://bio.tools/gsoap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -231090,7 +235123,7 @@ A package for visualisation of gene set over-representation enrichment analysis.
     sc:url "https://github.com/tomastokar/gsoap" .
 
 <https://bio.tools/gsp4pdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0154,
@@ -231114,7 +235147,7 @@ The novel feature of GSP4PDB is that a protein-ligand structural pattern is grap
     sc:url "https://structuralbio.utalca.cl/gsp4pdb/" .
 
 <https://bio.tools/gspace> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_3056,
         edam:topic_3127,
@@ -231131,10 +235164,10 @@ The novel feature of GSP4PDB is that a protein-ligand structural pattern is grap
 
 <https://bio.tools/gsrc> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1714" ;
-            sc:name "Microarray spots image" ;
-            sc:sameAs "http://edamontology.org/data_1714" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1714" ;
+            sc:encodingFormat "http://edamontology.org/format_3578" ;
+            sc:name "Microarray spots image" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0122,
@@ -231158,7 +235191,7 @@ The novel feature of GSP4PDB is that a protein-ligand structural pattern is grap
     biotools:primaryContact "Fabian Grandke" .
 
 <https://bio.tools/gsreg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -231177,7 +235210,7 @@ The novel feature of GSP4PDB is that a protein-ligand structural pattern is grap
     biotools:primaryContact "Bahman Afsari" .
 
 <https://bio.tools/gsri> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -231197,7 +235230,7 @@ The novel feature of GSP4PDB is that a protein-ligand structural pattern is grap
     biotools:primaryContact "Julian Gehring" .
 
 <https://bio.tools/gst> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0634,
@@ -231216,7 +235249,7 @@ The novel feature of GSP4PDB is that a protein-ligand structural pattern is grap
     biotools:primaryContact "Yao Zhou" .
 
 <https://bio.tools/gstpred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -231229,11 +235262,11 @@ The novel feature of GSP4PDB is that a protein-ligand structural pattern is grap
         "Mac",
         "Windows" ;
     sc:softwareHelp <http://crdd.osdd.net/raghava/gstpred/> ;
-    sc:url "http://www.imtech.res.in/raghava/gstpred/" ;
+    sc:url "https://webs.iiitd.edu.in/raghava/gstpred/" ;
     biotools:primaryContact "Dr.G.P.S.Raghava" .
 
 <https://bio.tools/gsufsort> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2269 ;
     sc:citation <https://doi.org/10.1186/S13015-020-00177-Y>,
@@ -231250,7 +235283,7 @@ gsufsort [1] is a fast, portable and lightweight tool for constructing the suffi
     sc:url "http://www.github.com/felipelouza/gsufsort" .
 
 <https://bio.tools/gsuite_hyperbrowser> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0622,
@@ -231268,7 +235301,7 @@ gsufsort [1] is a fast, portable and lightweight tool for constructing the suffi
     biotools:primaryContact "Support" .
 
 <https://bio.tools/gsva> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -231288,7 +235321,7 @@ gsufsort [1] is a fast, portable and lightweight tool for constructing the suffi
     biotools:primaryContact "Justin Guinney" .
 
 <https://bio.tools/gt-pro> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2885,
@@ -231312,7 +235345,7 @@ To genotype a microbiome, GT-Pro takes as input one or more shotgun metagenomics
     sc:url "https://github.com/zjshi/gt-pro" .
 
 <https://bio.tools/gtb-ppi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0128,
@@ -231330,7 +235363,7 @@ The dataset file contains the S. cerevisiae, H. pylori ,the indepedent data set
     sc:url "https://github.com/QUST-AIBBDRC/GTB-PPI/" .
 
 <https://bio.tools/gtdt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0634,
@@ -231346,7 +235379,7 @@ The dataset file contains the S. cerevisiae, H. pylori ,the indepedent data set
     biotools:primaryContact "Bingshan Li" .
 
 <https://bio.tools/gted> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0605,
@@ -231366,7 +235399,7 @@ Graph Traversal Edit Distance.""" ;
     sc:url "https://github.com/Ali-E/GTED" .
 
 <https://bio.tools/gtex> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
@@ -231392,7 +235425,7 @@ Graph Traversal Edit Distance.""" ;
     biotools:primaryContact "GTEx contact form" .
 
 <https://bio.tools/gtfold> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0099 ;
@@ -231411,14 +235444,14 @@ Graph Traversal Edit Distance.""" ;
 
 <https://bio.tools/gtftogenepred> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ] ;
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_2306" ;
+            sc:name "Annotation track" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_3011" ;
+            sc:name "Annotation track" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "convert a GTF file to a genePred" ;
     sc:featureList edam:operation_3267 ;
     sc:name "gtftogenepred" ;
@@ -231426,7 +235459,7 @@ Graph Traversal Edit Distance.""" ;
     sc:url "https://github.com/ENCODE-DCC/kentUtils/blob/master/src/hg/utils/gtfToGenePred/gtfToGenePred.c" .
 
 <https://bio.tools/gtmix> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0199,
@@ -231450,7 +235483,7 @@ The key feature of GTmix is that it works with local gene genealogies inferred f
     sc:url "https://github.com/yufengwudcs/GTmix" .
 
 <https://bio.tools/gtnmf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:description "Context-aware non negative matrix factorization clustering" ;
     sc:featureList edam:operation_3432 ;
@@ -231464,7 +235497,7 @@ The key feature of GTmix is that it works with local gene genealogies inferred f
     biotools:primaryContact "Sebastiano Vascon" .
 
 <https://bio.tools/gto> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -231483,7 +235516,7 @@ GTO is a toolkit for genomics and proteomics, namely for FASTQ, FASTA and SEQ fo
     sc:url "http://bioinformatics.ua.pt/gto" .
 
 <https://bio.tools/gtom> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269 ;
     sc:citation <https://doi.org/10.1186/1471-2105-8-22> ;
@@ -231499,7 +235532,7 @@ GTO is a toolkit for genomics and proteomics, namely for FASTQ, FASTA and SEQ fo
     biotools:primaryContact "Joaquín Goñi" .
 
 <https://bio.tools/gtool> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3516 ;
     sc:description "Program for transforming sets of genotype data for use with the programs SNPTEST and IMPUTE." ;
@@ -231511,7 +235544,7 @@ GTO is a toolkit for genomics and proteomics, namely for FASTQ, FASTA and SEQ fo
     sc:url "http://www.well.ox.ac.uk/~cfreeman/software/gwas/gtool.html" .
 
 <https://bio.tools/gtools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2885,
@@ -231531,8 +235564,43 @@ Today the versions 0.2.8 for GenomicTools and 0.1.4 for GenomicTools.fileHandler
     sc:name "GTools" ;
     sc:url "http://genomictools.danielfischer.name" .
 
+<https://bio.tools/gtpbinder> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:description "Guanosine-5'-triphosphate (GTP) is a purine nucleotide. GTP is involved in energy transfer or an activator of substrates in biochemical reactions. GTP Binding proteins are regulatory proteins which becomes activated when bound to GTP and is involved in signal transduction." ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "gtpbinder" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/gtpbinder/index.html> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/gtpbinder/index.html" .
+
+<https://bio.tools/gtqc> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0625,
+        edam:topic_3517,
+        edam:topic_3518,
+        edam:topic_3676 ;
+    sc:citation <https://doi.org/10.7150/JGEN.69860>,
+        "pmcid:PMC8922302",
+        "pubmed:35300047" ;
+    sc:description "R package GTQC streamlines a majority of the quality control steps and produces a detailed HTML report on a plethora of quality control metrics, thus enabling a swift and rigorous data quality inspection prior to downstream GWAS and related analyses" ;
+    sc:featureList edam:operation_0484,
+        edam:operation_2428,
+        edam:operation_3196 ;
+    sc:license "Not licensed" ;
+    sc:name "GTQC" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/slzhao/GTQC" .
+
 <https://bio.tools/gtrd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0749,
@@ -231556,7 +235624,7 @@ Clusters for the same TF revealed by different peak calling methods were joined
     sc:url "http://gtrd.biouml.org/" .
 
 <https://bio.tools/gtree> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3382,
@@ -231575,14 +235643,14 @@ Global Tree Reconstruction System (GTree) software is a open source software for
 
 <https://bio.tools/gtrellis> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1017" ;
-            sc:name "Sequence range" ;
-            sc:sameAs "http://edamontology.org/data_1017" ] ;
+            sc:additionalType "http://edamontology.org/data_1017" ;
+            sc:encodingFormat "http://edamontology.org/format_2078" ;
+            sc:name "Sequence range" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_2919" ;
+            sc:name "Annotation track" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0622,
@@ -231606,7 +235674,7 @@ Global Tree Reconstruction System (GTree) software is a open source software for
     biotools:primaryContact <http://orcid.org/0000-0002-7395-8709> .
 
 <https://bio.tools/gtseq-pipeline> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2885,
@@ -231619,7 +235687,7 @@ Global Tree Reconstruction System (GTree) software is a open source software for
     sc:url "https://github.com/GTseq/GTseq-Pipeline" .
 
 <https://bio.tools/gtxplorer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Bioinformatics portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0084,
@@ -231643,7 +235711,7 @@ Global Tree Reconstruction System (GTree) software is a open source software for
     sc:url "https://vulcan.cs.uga.edu/gtxplorer/" .
 
 <https://bio.tools/gtz> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1186/s12859-017-1973-5> ;
@@ -231656,7 +235724,7 @@ Global Tree Reconstruction System (GTree) software is a open source software for
         "Zhuo Song" .
 
 <https://bio.tools/guardd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0123,
         edam:topic_0176,
@@ -231673,7 +235741,7 @@ Global Tree Reconstruction System (GTree) software is a open source software for
     biotools:primaryContact "Mark P. Foster" .
 
 <https://bio.tools/gubbins> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0625,
@@ -231692,7 +235760,7 @@ Global Tree Reconstruction System (GTree) software is a open source software for
     biotools:primaryContact "Simon R. Harris" .
 
 <https://bio.tools/guess> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3053 ;
     sc:citation <https://doi.org/10.1371/journal.pgen.1003657> ;
@@ -231706,7 +235774,7 @@ Global Tree Reconstruction System (GTree) software is a open source software for
     sc:url "http://bgx.org.uk/software/guess.html" .
 
 <https://bio.tools/gui-fying-classification-dl-model-builder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344 ;
@@ -231721,7 +235789,7 @@ Global Tree Reconstruction System (GTree) software is a open source software for
     biotools:primaryContact "Kevin Chng" .
 
 <https://bio.tools/gui-retinal-blood-vessel-extraction-fundus-images> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -231738,7 +235806,7 @@ Global Tree Reconstruction System (GTree) software is a open source software for
     biotools:primaryContact "Jemima Jeba" .
 
 <https://bio.tools/gui-solving-delay-differential-equations-local-search> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3315,
         edam:topic_3374,
@@ -231756,7 +235824,7 @@ Global Tree Reconstruction System (GTree) software is a open source software for
     biotools:primaryContact "Dr. Soumya Banerjee" .
 
 <https://bio.tools/guidance> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3168 ;
@@ -231773,7 +235841,7 @@ Global Tree Reconstruction System (GTree) software is a open source software for
     biotools:primaryContact "GUIDANCE Support" .
 
 <https://bio.tools/guidance2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_3168,
@@ -231792,7 +235860,7 @@ Global Tree Reconstruction System (GTree) software is a open source software for
     biotools:primaryContact "Support" .
 
 <https://bio.tools/guide> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0203,
@@ -231810,7 +235878,7 @@ Global Tree Reconstruction System (GTree) software is a open source software for
     sc:url "http://guide.wehi.edu.au/" .
 
 <https://bio.tools/guidedclustering> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3518 ;
@@ -231826,7 +235894,7 @@ Global Tree Reconstruction System (GTree) software is a open source software for
     biotools:primaryContact "Claudio Lottaz" .
 
 <https://bio.tools/guidefinder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0622,
@@ -231847,14 +235915,14 @@ Pan-bacterial, genome-wide guide designer.""" ;
 
 <https://bio.tools/guidemaker> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2887" ;
-            sc:name "Nucleic acid sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2887" ] ;
+            sc:additionalType "http://edamontology.org/data_2887" ;
+            sc:encodingFormat "http://edamontology.org/format_2205" ;
+            sc:name "Nucleic acid sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2084" ;
-            sc:name "Nucleic acid report" ;
-            sc:sameAs "http://edamontology.org/data_2084" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2084" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Nucleic acid report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:citation <https://doi.org/10.1101/2021.06.28.450164> ;
     sc:description "Software to design CRISPR-Cas guide RNA pools in non-model genomes." ;
     sc:featureList edam:operation_2419 ;
@@ -231868,7 +235936,7 @@ Pan-bacterial, genome-wide guide designer.""" ;
     biotools:primaryContact <https://orcid.org/0000-0002-3703-834X> .
 
 <https://bio.tools/guidepro> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0154,
@@ -231886,14 +235954,14 @@ GuidePro is a two-layer ensemble predictor that enables the integration of multi
 
 <https://bio.tools/guides> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1048" ;
-            sc:name "Database ID" ;
-            sc:sameAs "http://edamontology.org/data_1048" ] ;
+            sc:additionalType "http://edamontology.org/data_1048" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Database ID" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1234" ;
-            sc:name "Sequence set (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1234" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1234" ;
+            sc:encodingFormat "http://edamontology.org/format_2032" ;
+            sc:name "Sequence set (nucleic acid)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_1775,
@@ -231911,7 +235979,7 @@ GuidePro is a two-layer ensemble predictor that enables the integration of multi
     sc:url "http://guides.sanjanalab.org/#/" .
 
 <https://bio.tools/guidescan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0085,
         edam:topic_0099,
@@ -231932,7 +236000,7 @@ GuidePro is a two-layer ensemble predictor that enables the integration of multi
         "Developers" .
 
 <https://bio.tools/guideseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0097,
@@ -231950,7 +236018,7 @@ GuidePro is a two-layer ensemble predictor that enables the integration of multi
     biotools:primaryContact "Lihua Julie Zhu" .
 
 <https://bio.tools/guidestar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0659,
@@ -231964,20 +236032,8 @@ GuidePro is a two-layer ensemble predictor that enables the integration of multi
     sc:url "http://www.guidestar.kr" ;
     biotools:primaryContact "Jee Eun Kang" .
 
-<https://bio.tools/guidetomeasure-OT> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3063,
-        edam:topic_3399,
-        edam:topic_3416 ;
-    sc:citation <https://doi.org/10.1016/J.IJMEDINF.2019.07.004>,
-        "pubmed:31445277" ;
-    sc:description "> MEDIUM CONFIDENCE! | > HOMEPAGE MISSING! | A mobile 3D application to improve the accuracy, consistency, and efficiency of clinician-led home-based falls-risk assessments | BACKGROUND:A key falls prevention intervention delivered within occupational therapy is the home environment falls-risk assessment process. This involves the clinician visiting the patient's home and using a 2D paper-based measurement guidance booklet to ensure that all measurements are taken and recorded accurately. However, 30% of all assistive devices installed within the home are abandoned by patients, in part as a result of the inaccurate measurements being recorded as part of the home environment falls-risk assessment process. In the absence of more appropriate and effective guidance, high levels of device abandonment are likely to persist" ;
-    sc:featureList edam:operation_0337,
-        edam:operation_3435 ;
-    sc:name "guidetomeasure-OT" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31445277" .
-
 <https://bio.tools/guidetopharmacology> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0202,
         edam:topic_0219,
@@ -232005,7 +236061,7 @@ GuidePro is a two-layer ensemble predictor that enables the integration of multi
     sc:url "http://www.guidetopharmacology.org/" .
 
 <https://bio.tools/guidingnet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0203,
@@ -232024,7 +236080,7 @@ GuidingNet is a method to reveal transcriptional cofactor and predict binding fo
     sc:url "https://github.com/AMSSwanglab/GuidingNet" .
 
 <https://bio.tools/guidock> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_2259 ;
     sc:citation <https://doi.org/10.1371/journal.pone.0152686>,
@@ -232042,7 +236098,7 @@ GuidingNet is a method to reveal transcriptional cofactor and predict binding fo
     biotools:primaryContact <http://orcid.org/0000-0002-1754-7577> .
 
 <https://bio.tools/guidock-vnc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0602,
@@ -232061,7 +236117,7 @@ GuidingNet is a method to reveal transcriptional cofactor and predict binding fo
     biotools:primaryContact "Ka Yee Yeung" .
 
 <https://bio.tools/guild> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3396 ;
     sc:author <http://orcid.org/0000-0002-3466-6535> ;
@@ -232080,14 +236136,14 @@ GuidingNet is a method to reveal transcriptional cofactor and predict binding fo
 
 <https://bio.tools/guildify> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2339" ;
-            sc:name "Ontology concept name" ;
-            sc:sameAs "http://edamontology.org/data_2339" ] ;
+            sc:additionalType "http://edamontology.org/data_2339" ;
+            sc:encodingFormat "http://edamontology.org/format_1963" ;
+            sc:name "Ontology concept name" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:encodingFormat "http://edamontology.org/format_3619" ;
+            sc:name "Pathway or network" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API" ;
     sc:applicationSubCategory edam:topic_3396 ;
     sc:author <http://orcid.org/0000-0002-3466-6535> ;
@@ -232110,7 +236166,7 @@ GuidingNet is a method to reveal transcriptional cofactor and predict binding fo
     sc:url "http://sbi.imim.es/web/GUILDify.php" .
 
 <https://bio.tools/guip1> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Library" ;
     sc:applicationSubCategory edam:topic_2269,
@@ -232130,14 +236186,14 @@ Graphical User Interfaces for Phase I Designs.""" ;
 
 <https://bio.tools/guitar> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_3586" ;
+            sc:name "Sequence alignment" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3508" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -232158,7 +236214,7 @@ Graphical User Interfaces for Phase I Designs.""" ;
     biotools:primaryContact "Jia Meng" .
 
 <https://bio.tools/gunc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0622,
@@ -232176,7 +236232,7 @@ Python package for detection of chimerism and contamination in prokaryotic genom
     sc:url "https://github.com/grp-bork/gunc" .
 
 <https://bio.tools/gunifrac> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3293,
         edam:topic_3301,
@@ -232193,7 +236249,7 @@ Python package for detection of chimerism and contamination in prokaryotic genom
     biotools:primaryContact "Hongzhe Li" .
 
 <https://bio.tools/guppy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0622,
@@ -232210,7 +236266,7 @@ Python package for detection of chimerism and contamination in prokaryotic genom
     biotools:primaryContact "Yutaka Ueno" .
 
 <https://bio.tools/guppy_photometry> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3304,
         edam:topic_3382,
@@ -232226,8 +236282,31 @@ Python package for detection of chimerism and contamination in prokaryotic genom
         "Windows" ;
     sc:url "https://github.com/LernerLab/GuPPy" .
 
+<https://bio.tools/gurfap> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0203,
+        edam:topic_0602,
+        edam:topic_0623,
+        edam:topic_3407 ;
+    sc:citation <https://doi.org/10.3389/FGENE.2022.823966>,
+        "pmcid:PMC9039005",
+        "pubmed:35495163" ;
+    sc:description "A platform for gene function analysis in G. uralensis" ;
+    sc:featureList edam:operation_0314,
+        edam:operation_2436,
+        edam:operation_3463,
+        edam:operation_3672 ;
+    sc:license "Not licensed" ;
+    sc:name "GURFAP" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://www.gzybioinformatics.cn/GURFAP" .
+
 <https://bio.tools/gust> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0622,
@@ -232248,7 +236327,7 @@ GUST predicts oncogenes (OGs), tumor suppressor gens (TSGs) and passenger genes
     sc:url "https://github.com/liliulab/gust" .
 
 <https://bio.tools/gutMDisorder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_3068,
@@ -232266,15 +236345,8 @@ gutMDisorder (http: bio-annotation.cn gutMDisorder), a manually curated database
     sc:name "gutMDisorder" ;
     sc:url "http://bio-annotation.cn/gutMDisorder" .
 
-<https://bio.tools/gut_microbiota_analysis> a sc:SoftwareApplication ;
-    sc:additionalType "Bioinformatics portal" ;
-    sc:applicationSubCategory edam:topic_3391 ;
-    sc:description "In the past decades, large-scale endeavors provide a preliminary understanding of the biology and medical significance of human microbiota. DNA-based analyses, especially next-generation sequencing, have expanded our horizon by generating enormous new data sets that can be mined for information on the composition and functional properties of microbial communities. With extensive experience in human microbiome research, we can provide a comprehensive solution to pharmaceutical and biotechnology companies, as well as academia and government agencies." ;
-    sc:name "Gut microbiota Analysis" ;
-    sc:url "https://www.cd-genomics.com/microbioseq/microecology-and-human-health.html" .
-
 <https://bio.tools/gutbalance> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3174,
@@ -232293,7 +236365,7 @@ The compositionality of the microbiome data is well-known but often neglected. T
     sc:url "http://lab.malab.cn/soft/GutBalance" .
 
 <https://bio.tools/gutmega> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0634,
@@ -232311,8 +236383,50 @@ Recently numerous studies have identified that the perturbations in the gut micr
     sc:name "gutMEGA" ;
     sc:url "http://gutmega.omicsbio.info" .
 
+<https://bio.tools/gutmgene> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_3172,
+        edam:topic_3174,
+        edam:topic_3697,
+        edam:topic_3837 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAB786>,
+        "pubmed:34500458" ;
+    sc:description "A comprehensive database for target genes of gut microbes and microbial metabolites." ;
+    sc:featureList edam:operation_2421,
+        edam:operation_2422,
+        edam:operation_3461 ;
+    sc:isAccessibleForFree true ;
+    sc:name "gutMGene" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://bio-annotation.cn/gutmgene" .
+
+<https://bio.tools/gutmicronet> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0602,
+        edam:topic_0634,
+        edam:topic_3382,
+        edam:topic_3407,
+        edam:topic_3697 ;
+    sc:citation <https://doi.org/10.1101/2021.11.10.468051> ;
+    sc:description "An interactive platform for gut microbiome interaction exploration." ;
+    sc:featureList edam:operation_0276,
+        edam:operation_3463,
+        edam:operation_3925 ;
+    sc:isAccessibleForFree true ;
+    sc:name "GutMicroNet" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://gutmicro.net" .
+
 <https://bio.tools/gutsmash> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0602,
@@ -232334,14 +236448,13 @@ Recently numerous studies have identified that the perturbations in the gut micr
 
 <https://bio.tools/guugle> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2975" ;
-            sc:name "Nucleic acid sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_2975" ] ;
+            sc:additionalType "http://edamontology.org/data_2975" ;
+            sc:encodingFormat "http://edamontology.org/format_1216" ;
+            sc:name "Nucleic acid sequence (raw)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2955" ;
-            sc:name "Sequence report" ;
-            sc:sameAs "http://edamontology.org/data_2955" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2955" ;
+            sc:name "Sequence report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web API",
         "Web application" ;
@@ -232363,7 +236476,7 @@ Recently numerous studies have identified that the perturbations in the gut micr
     sc:url "http://bibiserv.cebitec.uni-bielefeld.de/guugle" .
 
 <https://bio.tools/gvista> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0797 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btu355> ;
@@ -232379,7 +236492,7 @@ Recently numerous studies have identified that the perturbations in the gut micr
     sc:url "http://genome.lbl.gov/cgi-bin/GenomeVista" .
 
 <https://bio.tools/gviz> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -232397,7 +236510,7 @@ Recently numerous studies have identified that the perturbations in the gut micr
     biotools:primaryContact "Florian Hahne" .
 
 <https://bio.tools/gvviz> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0625,
         edam:topic_0634,
@@ -232418,7 +236531,7 @@ Recently numerous studies have identified that the perturbations in the gut micr
     sc:url "https://github.com/drzeeshanahmed/GVViZ-Public" .
 
 <https://bio.tools/gw-sem> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0622,
@@ -232440,7 +236553,7 @@ Recently numerous studies have identified that the perturbations in the gut micr
     biotools:primaryContact "Brad Verhulst" .
 
 <https://bio.tools/gwama> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3055 ;
     sc:citation <https://doi.org/10.1186/1471-2105-11-288>,
@@ -232458,7 +236571,7 @@ Recently numerous studies have identified that the perturbations in the gut micr
     biotools:primaryContact <http://orcid.org/0000-0002-2964-6011> .
 
 <https://bio.tools/gwapp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3517 ;
     sc:citation <https://doi.org/10.1105/tpc.112.108068> ;
@@ -232471,7 +236584,7 @@ Recently numerous studies have identified that the perturbations in the gut micr
     sc:url "https://gwapp.gmi.oeaw.ac.at/index.html" .
 
 <https://bio.tools/gwar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_2885,
@@ -232489,7 +236602,7 @@ Recently numerous studies have identified that the perturbations in the gut micr
     biotools:primaryContact "Pantelis Bagos" .
 
 <https://bio.tools/gwars> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2885,
         edam:topic_3517 ;
@@ -232507,7 +236620,7 @@ The application is hosted at gwaRs.""" ;
     sc:url "https://gwasviz.shinyapps.io/gwaRs/" .
 
 <https://bio.tools/gwas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -232528,7 +236641,7 @@ Summary Statistics from Other GWASes:.""" ;
     sc:url "https://pdgenetics.shinyapps.io/GWASBrowser/" .
 
 <https://bio.tools/gwas-atlas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0780,
         edam:topic_3517,
         edam:topic_3810 ;
@@ -232543,7 +236656,7 @@ Summary Statistics from Other GWASes:.""" ;
     sc:url "https://bigd.big.ac.cn/gwas/" .
 
 <https://bio.tools/gwas-vcf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0625,
@@ -232565,7 +236678,7 @@ VCF vs plain text GWAS storage formats.""" ;
     sc:url "https://gwas.mrcieu.ac.uk" .
 
 <https://bio.tools/gwas3d> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0749,
@@ -232587,7 +236700,7 @@ VCF vs plain text GWAS storage formats.""" ;
     biotools:primaryContact "GWAS3 Support" .
 
 <https://bio.tools/gwas4d> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3173,
@@ -232602,7 +236715,7 @@ VCF vs plain text GWAS storage formats.""" ;
     sc:url "http://mulinlab.tmu.edu.cn/gwas4d" .
 
 <https://bio.tools/gwas_catalog> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web API",
         "Web application" ;
@@ -232612,8 +236725,13 @@ VCF vs plain text GWAS storage formats.""" ;
         edam:topic_3366,
         edam:topic_3517 ;
     sc:citation <https://doi.org/10.1093/nar/gkt1229>,
+        <https://doi.org/10.1093/nar/gkw1133>,
+        <https://doi.org/10.1093/nar/gky1120>,
         "pmcid:PMC3965119",
-        "pubmed:24316577" ;
+        "pmcid:PMC6323933",
+        "pubmed:24316577",
+        "pubmed:27899670",
+        "pubmed:30445434" ;
     sc:description "A catalogue that provides a publicly available manually curated collection of published GWAS assaying at least 100 000 single-nucleotide polymorphisms (SNPs) and all SNP-trait associations with P <1 × 10−5." ;
     sc:featureList edam:operation_0484,
         edam:operation_2421,
@@ -232631,7 +236749,7 @@ VCF vs plain text GWAS storage formats.""" ;
     biotools:primaryContact "GWAS Catalog Support" .
 
 <https://bio.tools/gwascat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -232650,7 +236768,7 @@ VCF vs plain text GWAS storage formats.""" ;
     biotools:primaryContact "VJ Carey" .
 
 <https://bio.tools/gwasdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0602,
@@ -232672,16 +236790,33 @@ VCF vs plain text GWAS storage formats.""" ;
     biotools:primaryContact "For general questions",
         "For technical support" .
 
+<https://bio.tools/gwasfilter> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0625,
+        edam:topic_2885,
+        edam:topic_3517 ;
+    sc:citation <https://doi.org/10.3760/CMA.J.CN112338-20200731-01003>,
+        "pubmed:34814627" ;
+    sc:description "An R script to filter genome-wide association study" ;
+    sc:featureList edam:operation_3695 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "gwasfilter" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/lab319/gwas_filter" .
+
 <https://bio.tools/gwaspi> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ] ;
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3288" ;
+            sc:name "Sequence variations" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3517 ;
     sc:author "Arcadi Navarro Cuartiellas",
@@ -232704,7 +236839,7 @@ VCF vs plain text GWAS storage formats.""" ;
     sc:url "http://www.gwaspi.org/" .
 
 <https://bio.tools/gwasrapidd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3517 ;
@@ -232721,7 +236856,7 @@ VCF vs plain text GWAS storage formats.""" ;
     sc:url "https://github.com/ramiromagno/gwasrapidd" .
 
 <https://bio.tools/gwastools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3517 ;
@@ -232743,7 +236878,7 @@ VCF vs plain text GWAS storage formats.""" ;
         "Adrienne Stilp" .
 
 <https://bio.tools/gwasurvivr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0208,
         edam:topic_2885,
@@ -232767,7 +236902,7 @@ VCF vs plain text GWAS storage formats.""" ;
     biotools:primaryContact "Abbas Rizvi" .
 
 <https://bio.tools/gwatoolbox> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3053,
         edam:topic_3678 ;
@@ -232785,7 +236920,7 @@ VCF vs plain text GWAS storage formats.""" ;
     sc:url "http://www.eurac.edu/en/research/health/biomed/services/Pages/GWAtoolbox.aspx" .
 
 <https://bio.tools/gwena> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -232805,14 +236940,12 @@ Pipeline for augmented co-expression analysis.""" ;
 
 <https://bio.tools/gwfasta> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0857" ;
-            sc:name "Sequence search results" ;
-            sc:sameAs "http://edamontology.org/data_0857" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0857" ;
+            sc:name "Sequence search results" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0219,
@@ -232826,11 +236959,11 @@ Pipeline for augmented co-expression analysis.""" ;
         "Mac",
         "Windows" ;
     sc:softwareHelp <http://crdd.osdd.net/raghava/gwfasta/help.html> ;
-    sc:url "http://www.imtech.res.in/raghava/gwfasta/" ;
+    sc:url "http://webs.iiitd.edu.in/raghava/gwfasta/" ;
     biotools:primaryContact "Dr.G.P.S.Raghava" .
 
 <https://bio.tools/gwidd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0602,
@@ -232852,7 +236985,7 @@ Pipeline for augmented co-expression analysis.""" ;
     biotools:primaryContact "GWIDD Support" .
 
 <https://bio.tools/gwidecodeml> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0194,
         edam:topic_0769,
@@ -232872,7 +237005,7 @@ GWideCodeML is a Python package that provides support for testing evolutionary h
     sc:url "https://github.com/lauguma/gwidecodeml" .
 
 <https://bio.tools/gwips-viz> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0203 ;
     sc:author "Michel AM, Fox G, M Kiran A, De Bo C, O'Connor PB, Heaphy SM" ;
@@ -232897,7 +237030,7 @@ GWideCodeML is a Python package that provides support for testing evolutionary h
     sc:url "http://gwips.ucc.ie" .
 
 <https://bio.tools/gwis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3053 ;
@@ -232911,7 +237044,7 @@ GWideCodeML is a Python package that provides support for testing evolutionary h
     biotools:primaryContact "Joel S. Bader" .
 
 <https://bio.tools/gwovina> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0209,
         edam:topic_2275,
@@ -232932,7 +237065,7 @@ GWOVina - Fast Protein-Ligand Docking Tool based on GWO and AutoDock Vina.""" ;
     sc:url "https://cbbio.cis.um.edu.mo/software/gwovina" .
 
 <https://bio.tools/gwrm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Plug-in" ;
     sc:applicationSubCategory edam:topic_2269,
@@ -232951,16 +237084,40 @@ GWOVina - Fast Protein-Ligand Docking Tool based on GWO and AutoDock Vina.""" ;
     sc:url "https://cran.r-project.org/web/packages/GWRM/" ;
     biotools:primaryContact <http://orcid.org/0000-0001-9795-9610> .
 
+<https://bio.tools/gwyre> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0199,
+        edam:topic_0602,
+        edam:topic_0625,
+        edam:topic_2275 ;
+    sc:citation <https://doi.org/10.1016/J.JMB.2022.167608>,
+        "pmcid:PMC9188266",
+        "pubmed:35662458" ;
+    sc:description "A Resource for Mapping Variants onto Experimental and Modeled Structures of Human Protein Complexes." ;
+    sc:featureList edam:operation_0331,
+        edam:operation_0477,
+        edam:operation_3196,
+        edam:operation_3891,
+        edam:operation_3899 ;
+    sc:isAccessibleForFree true ;
+    sc:name "GWYRE" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://www.gwyre.org" .
+
 <https://bio.tools/gxa> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3568" ;
-            sc:name "Gene Expression Atlas Experiment ID" ;
-            sc:sameAs "http://edamontology.org/data_3568" ] ;
+            sc:additionalType "http://edamontology.org/data_3568" ;
+            sc:name "Gene Expression Atlas Experiment ID" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Gene expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Gene expression data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0621,
@@ -232984,14 +237141,13 @@ GWOVina - Fast Protein-Ligand Docking Tool based on GWO and AutoDock Vina.""" ;
 
 <https://bio.tools/gxa_expt> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3568" ;
-            sc:name "Gene Expression Atlas Experiment ID" ;
-            sc:sameAs "http://edamontology.org/data_3568" ] ;
+            sc:additionalType "http://edamontology.org/data_3568" ;
+            sc:name "Gene Expression Atlas Experiment ID" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Gene expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Gene expression data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0203 ;
     sc:citation <https://doi.org/10.1093/nar/gkr913>,
@@ -233009,7 +237165,7 @@ GWOVina - Fast Protein-Ligand Docking Tool based on GWO and AutoDock Vina.""" ;
     biotools:primaryContact "Expression Atlas contact email" .
 
 <https://bio.tools/gxd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0203,
@@ -233030,7 +237186,7 @@ GWOVina - Fast Protein-Ligand Docking Tool based on GWO and AutoDock Vina.""" ;
     biotools:primaryContact "Martin Ringwald" .
 
 <https://bio.tools/gxescan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3053,
@@ -233047,7 +237203,7 @@ GWOVina - Fast Protein-Ligand Docking Tool based on GWO and AutoDock Vina.""" ;
     biotools:primaryContact "Department of biostatistics USC" .
 
 <https://bio.tools/gxgscan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2269,
@@ -233064,7 +237220,7 @@ GWOVina - Fast Protein-Ligand Docking Tool based on GWO and AutoDock Vina.""" ;
     biotools:primaryContact "Department of Biostatistics USC" .
 
 <https://bio.tools/gxna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -233081,7 +237237,7 @@ GWOVina - Fast Protein-Ligand Docking Tool based on GWO and AutoDock Vina.""" ;
     sc:url "http://statweb.stanford.edu/~serban/gxna/" .
 
 <https://bio.tools/gydb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0160,
@@ -233105,14 +237261,12 @@ GWOVina - Fast Protein-Ligand Docking Tool based on GWO and AutoDock Vina.""" ;
 
 <https://bio.tools/h-blast> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0857" ;
-            sc:name "Sequence search results" ;
-            sc:sameAs "http://edamontology.org/data_0857" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0857" ;
+            sc:name "Sequence search results" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0097,
@@ -233129,7 +237283,7 @@ GWOVina - Fast Protein-Ligand Docking Tool based on GWO and AutoDock Vina.""" ;
     biotools:primaryContact "Yuesheng Xu" .
 
 <https://bio.tools/h-blox> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0080,
@@ -233147,7 +237301,7 @@ GWOVina - Fast Protein-Ligand Docking Tool based on GWO and AutoDock Vina.""" ;
         "Jochen Zuegge" .
 
 <https://bio.tools/h-clust> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2885,
@@ -233163,7 +237317,7 @@ GWOVina - Fast Protein-Ligand Docking Tool based on GWO and AutoDock Vina.""" ;
     biotools:primaryContact "Bernie Devlin" .
 
 <https://bio.tools/h-dbas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3170,
@@ -233184,54 +237338,48 @@ GWOVina - Fast Protein-Ligand Docking Tool based on GWO and AutoDock Vina.""" ;
 
 <https://bio.tools/h-invdb> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2770" ;
-            sc:name "HIT ID" ;
-            sc:sameAs "http://edamontology.org/data_2770" ],
+            sc:additionalType "http://edamontology.org/data_2771" ;
+            sc:name "HIX ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2771" ;
-            sc:name "HIX ID" ;
-            sc:sameAs "http://edamontology.org/data_2771" ],
+            sc:additionalType "http://edamontology.org/data_2771" ;
+            sc:name "HIX ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2770" ;
-            sc:name "HIT ID" ;
-            sc:sameAs "http://edamontology.org/data_2770" ],
+            sc:additionalType "http://edamontology.org/data_2771" ;
+            sc:name "HIX ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2771" ;
-            sc:name "HIX ID" ;
-            sc:sameAs "http://edamontology.org/data_2771" ],
+            sc:additionalType "http://edamontology.org/data_2770" ;
+            sc:name "HIT ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2770" ;
-            sc:name "HIT ID" ;
-            sc:sameAs "http://edamontology.org/data_2770" ],
+            sc:additionalType "http://edamontology.org/data_2770" ;
+            sc:name "HIT ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2771" ;
-            sc:name "HIX ID" ;
-            sc:sameAs "http://edamontology.org/data_2771" ] ;
+            sc:additionalType "http://edamontology.org/data_2770" ;
+            sc:name "HIT ID" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0916" ;
-            sc:name "Gene report" ;
-            sc:sameAs "http://edamontology.org/data_0916" ],
+            sc:additionalType "http://edamontology.org/data_3134" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Gene transcript report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3134" ;
-            sc:name "Gene transcript report" ;
-            sc:sameAs "http://edamontology.org/data_3134" ],
+            sc:additionalType "http://edamontology.org/data_3134" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Gene transcript report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0916" ;
-            sc:name "Gene report" ;
-            sc:sameAs "http://edamontology.org/data_0916" ],
+            sc:additionalType "http://edamontology.org/data_0916" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Gene report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3134" ;
-            sc:name "Gene transcript report" ;
-            sc:sameAs "http://edamontology.org/data_3134" ],
+            sc:additionalType "http://edamontology.org/data_0916" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Gene report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0916" ;
-            sc:name "Gene report" ;
-            sc:sameAs "http://edamontology.org/data_0916" ],
+            sc:additionalType "http://edamontology.org/data_0916" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Gene report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3134" ;
-            sc:name "Gene transcript report" ;
-            sc:sameAs "http://edamontology.org/data_3134" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3134" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Gene transcript report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0140,
         edam:topic_0199,
@@ -233252,7 +237400,7 @@ GWOVina - Fast Protein-Ligand Docking Tool based on GWO and AutoDock Vina.""" ;
     sc:url "http://www.h-invitational.jp/" .
 
 <https://bio.tools/h-protection> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0128,
@@ -233271,7 +237419,7 @@ GWOVina - Fast Protein-Ligand Docking Tool based on GWO and AutoDock Vina.""" ;
         "Sokolovskiy Igor Vitalievich" .
 
 <https://bio.tools/h-racs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0154,
@@ -233289,7 +237437,7 @@ H-RACS is designed to predict synergistic drug combinations based on drug featur
     sc:url "http://www.badd-cao.net/h-racs" .
 
 <https://bio.tools/h-tsne> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3474 ;
@@ -233301,7 +237449,7 @@ H-RACS is designed to predict synergistic drug combinations based on drug featur
     sc:url "http://github.com/Cobanoglu-Lab/h-tSNE" .
 
 <https://bio.tools/h-vdw> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0128,
@@ -233318,7 +237466,7 @@ H-RACS is designed to predict synergistic drug combinations based on drug featur
     sc:url "http://www.cbi.seu.edu.cn/H-VDW/H-VDW.htm" .
 
 <https://bio.tools/h2v> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -233334,14 +237482,13 @@ Start your journey with H2V ...""" ;
 
 <https://bio.tools/h3agwas> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ] ;
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_2333" ;
+            sc:name "Sequence variations" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0920" ;
-            sc:name "Genotype/phenotype report" ;
-            sc:sameAs "http://edamontology.org/data_0920" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0920" ;
+            sc:name "Genotype/phenotype report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0654,
@@ -233362,7 +237509,7 @@ Start your journey with H2V ...""" ;
     biotools:primaryContact <https://orcid.org/0000-0002-0581-149X> .
 
 <https://bio.tools/h3loopred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_2830,
@@ -233378,7 +237525,7 @@ Start your journey with H2V ...""" ;
     biotools:primaryContact "Anna Tramontano" .
 
 <https://bio.tools/h3m2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3168,
@@ -233393,7 +237540,7 @@ Start your journey with H2V ...""" ;
     biotools:primaryContact "Alberto Magi" .
 
 <https://bio.tools/h4concur> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0621,
@@ -233416,7 +237563,7 @@ You will need Perl and bedtools to be installed in your system.""" ;
     sc:url "https://github.com/susbo/concur" .
 
 <https://bio.tools/h4coronavirus3d> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_2814,
@@ -233434,7 +237581,7 @@ You will need Perl and bedtools to be installed in your system.""" ;
     sc:url "https://coronavirus3d.org" .
 
 <https://bio.tools/h4hichip-peaks> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3125,
@@ -233454,8 +237601,25 @@ This package can be used to find enriched peak regions from HiChIP datasets that
     sc:name "h4HiChIP-Peaks" ;
     sc:url "https://github.com/ChenfuShi/HiChIP_peaks" .
 
+<https://bio.tools/h4htseq> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library",
+        "Workbench" ;
+    sc:applicationSubCategory edam:topic_0091,
+        edam:topic_0203,
+        edam:topic_3170 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC166>,
+        "pubmed:35311944" ;
+    sc:description "A Python library to facilitate programmatic analysis of data from high-throughput sequencing (HTS) experiments." ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "h4HTSeq" ;
+    sc:operatingSystem "Linux",
+        "Mac" ;
+    sc:url "https://pypi.python.org/pypi/HTSeq" .
+
 <https://bio.tools/h4rvs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0625,
@@ -233478,7 +237642,7 @@ ExomeSeq, Genetics, GenomeWideAssociation, ImmunoOncology, Software, VariantDete
     sc:url "https://bioconductor.org/packages/release/bioc/html/RVS.html" .
 
 <https://bio.tools/h5vc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btu026> ;
@@ -233496,7 +237660,7 @@ ExomeSeq, Genetics, GenomeWideAssociation, ImmunoOncology, Software, VariantDete
     biotools:primaryContact "Paul Theodor Pyl" .
 
 <https://bio.tools/hGPCRnet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0202,
@@ -233515,7 +237679,7 @@ The extended human GPCR network.""" ;
     sc:url "http://bioinformatics.biol.uoa.gr/hGPCRnet" .
 
 <https://bio.tools/hTFtarget> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0659,
@@ -233534,7 +237698,7 @@ Transcription factors (TFs) as key regulators could modulate the expression of t
     sc:url "http://bioinfo.life.hust.edu.cn/hTFtarget" .
 
 <https://bio.tools/haarseg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3518 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btn272> ;
@@ -233548,7 +237712,7 @@ Transcription factors (TFs) as key regulators could modulate the expression of t
     sc:url "http://webee.technion.ac.il/people/YoninaEldar/Info/software/HaarSeg.htm" .
 
 <https://bio.tools/hac> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602 ;
     sc:citation "pubmed:21342576" ;
@@ -233558,8 +237722,25 @@ Transcription factors (TFs) as key regulators could modulate the expression of t
     sc:operatingSystem "Linux" ;
     sc:url "https://code.google.com/p/hacml/" .
 
+<https://bio.tools/hacksig> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workbench" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_2640,
+        edam:topic_3170 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC161>,
+        "pubmed:35303067" ;
+    sc:description "A unified and tidy R framework to easily compute gene expression signature scores." ;
+    sc:featureList edam:operation_2436 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "hacksig" ;
+    sc:operatingSystem "Mac",
+        "Windows" ;
+    sc:url "https://CRAN.R-project.org/package=hacksig" .
+
 <https://bio.tools/haddock> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite",
         "Web application",
         "Web service" ;
@@ -233599,7 +237780,7 @@ Transcription factors (TFs) as key regulators could modulate the expression of t
     biotools:primaryContact <http://orcid.org/0000-0001-7369-1322> .
 
 <https://bio.tools/hadex> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0769,
@@ -233618,7 +237799,7 @@ Tools for processing, analysis and visualization of HDX-MS experiments.""" ;
     sc:url "http://mslab-ibb.pl/shiny/HaDeX/" .
 
 <https://bio.tools/hadoop> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Workbench" ;
     sc:applicationSubCategory edam:topic_3316 ;
@@ -233631,7 +237812,7 @@ Tools for processing, analysis and visualization of HDX-MS experiments.""" ;
     sc:url "https://hadoop.apache.org/" .
 
 <https://bio.tools/hadoop-cnv-rf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3168,
@@ -233649,7 +237830,7 @@ Hadoop-CNV-RF: A Scalable Copy Number Variation Detection Tool for Next-Generati
     sc:url "https://github.com/getiria-onsongo/hadoop-cnvrf-public" .
 
 <https://bio.tools/hadoopcnv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3168,
         edam:topic_3175 ;
@@ -233663,7 +237844,7 @@ Hadoop-CNV-RF: A Scalable Copy Number Variation Detection Tool for Next-Generati
     sc:url "https://github.com/WGLab/HadoopCNV" .
 
 <https://bio.tools/haforest> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0623,
@@ -233682,7 +237863,7 @@ This tool is using HaForest algorithm to identify haploinsufficient genes.""" ;
     sc:url "https://github.com/yangyn533/HaForest" .
 
 <https://bio.tools/hahmir_db> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -233700,7 +237881,7 @@ HAHmiR DB (High-Altitude Human miRNA Database) is a unique, comprehensive, curat
     sc:url "http://www.hahmirdb.in" .
 
 <https://bio.tools/hairpin_annotation> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0082 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/bts311> ;
@@ -233715,7 +237896,7 @@ HAHmiR DB (High-Altitude Human miRNA Database) is a unique, comprehensive, curat
     biotools:primaryContact "Forum" .
 
 <https://bio.tools/hal> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_2640,
@@ -233735,19 +237916,8 @@ Hybrid Automata Library (HAL) is a Java library that facilitates hybrid modeling
     sc:name "HAL" ;
     sc:url "https://github.com/MathOnco/HAL" .
 
-<https://bio.tools/hal-02116633> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3067,
-        edam:topic_3304,
-        edam:topic_3444 ;
-    sc:citation <https://doi.org/10.3389/FNEUR.2019.00851>,
-        "pmcid:PMC6718608",
-        "pubmed:31507507" ;
-    sc:description "> MEDIUM CONFIDENCE! | > HOMEPAGE BROKEN! | > CORRECT NAME OF TOOL COULD ALSO BE 'histological atlases' | MRI Atlas of the Human Deep Brain | Mastering detailed anatomy of the human deep brain in clinical neurosciences is challenging. Although numerous pioneering works have gathered a large dataset of structural and topographic information, it is still difficult to transfer this knowledge into practice, even with advanced magnetic resonance imaging techniques. Thus, classical histological atlases continue to be used to identify structures for stereotactic targeting in functional neurosurgery. Physicians mainly use these atlases as a template co-registered with the patient's brain. However, it is possible to directly identify stereotactic targets on MRI scans, enabling personalized targeting" ;
-    sc:name "hal-02116633" ;
-    sc:url "https://hal.archives-ouvertes.fr/" .
-
 <https://bio.tools/hal-x> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0625,
@@ -233764,7 +237934,7 @@ Hybrid Automata Library (HAL) is a Java library that facilitates hybrid modeling
     sc:url "https://pypi.org/project/hal-x/" .
 
 <https://bio.tools/halSynteny> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0102,
         edam:topic_0196,
@@ -233784,7 +237954,7 @@ Hybrid Automata Library (HAL) is a Java library that facilitates hybrid modeling
     sc:url "https://github.com/ComparativeGenomicsToolkit/hal/tree/master/synteny" .
 
 <https://bio.tools/halcyon> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_3474,
@@ -233802,7 +237972,7 @@ Halcyon incorporates neural-network techniques frequently used in the field of m
     sc:url "https://github.com/relastle/halcyon" .
 
 <https://bio.tools/halfpipe> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_0769,
         edam:topic_3316,
@@ -233820,7 +237990,7 @@ Halcyon incorporates neural-network techniques frequently used in the field of m
     biotools:primaryContact <https://orcid.org/0000-0002-3239-6957> .
 
 <https://bio.tools/halign> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0080,
@@ -233835,8 +238005,30 @@ Halcyon incorporates neural-network techniques frequently used in the field of m
     sc:url "http://datamining.xmu.edu.cn/software/halign/" ;
     biotools:primaryContact "Quan Zou" .
 
+<https://bio.tools/halla> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0084,
+        edam:topic_3172,
+        edam:topic_3295,
+        edam:topic_3518,
+        edam:topic_3697 ;
+    sc:citation <https://doi.org/10.1101/2021.11.11.468183> ;
+    sc:description "High-sensitivity pattern discovery in large, paired multi-omic datasets." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_2238,
+        edam:operation_3891 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "HAllA" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://github.com/biobakery/biobakery/wiki/halla> ;
+    sc:url "http://huttenhower.sph.harvard.edu/halla" .
+
 <https://bio.tools/halodom> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0797,
         edam:topic_3070,
@@ -233855,14 +238047,12 @@ Halcyon incorporates neural-network techniques frequently used in the field of m
 
 <https://bio.tools/halvade> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0850" ;
-            sc:name "Sequence set" ;
-            sc:sameAs "http://edamontology.org/data_0850" ] ;
+            sc:additionalType "http://edamontology.org/data_0850" ;
+            sc:name "Sequence set" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:name "Sequence variations" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btv179> ;
@@ -233879,14 +238069,17 @@ Halcyon incorporates neural-network techniques frequently used in the field of m
 
 <https://bio.tools/halvade_somatic> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3494" ;
-            sc:name "DNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3494" ] ;
-    bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3779" ;
-            sc:name "Annotated text" ;
-            sc:sameAs "http://edamontology.org/data_3779" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "DNA sequence" ] ;
+    bsc:output [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_3779" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Annotated text" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:citation <https://doi.org/10.1093/GIGASCIENCE/GIAB094>,
+        "pmcid:PMC8756192",
+        "pubmed:35022699" ;
     sc:description "Halvade implements germline and somatic variant calling pipelines based on the best-practices pipelines from the Broad Institute using the Spark framework. Halvade will produce a VCF output file which contains the single nucleotide polymorphisms (SNPs) and short insertions and deletions (indels) when supported by the used tools. This program requires Spark on either a local cluster with one or more nodes, an Amazon EMR cluster or the Docker image to run." ;
     sc:featureList edam:operation_0491,
         edam:operation_3227 ;
@@ -233898,12 +238091,33 @@ Halcyon incorporates neural-network techniques frequently used in the field of m
         "2.0.5" ;
     sc:url "https://bitbucket.org/dries_decap/halvadeforspark" .
 
+<https://bio.tools/ham-art> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workflow" ;
+    sc:applicationSubCategory edam:topic_0196,
+        edam:topic_0769,
+        edam:topic_3174,
+        edam:topic_3697,
+        edam:topic_3837 ;
+    sc:citation <https://doi.org/10.1371/JOURNAL.PGEN.1009776>,
+        "pmcid:PMC8947609",
+        "pubmed:35286304" ;
+    sc:description "An optimised culture-free Hi-C metagenomics pipeline for tracking antimicrobial resistance genes in complex microbial communities." ;
+    sc:featureList edam:operation_0310,
+        edam:operation_3731,
+        edam:operation_3840 ;
+    sc:isAccessibleForFree true ;
+    sc:license "BSD-3-Clause" ;
+    sc:name "HAM-ART" ;
+    sc:operatingSystem "Linux" ;
+    sc:url "https://github.com/lkalmar/HAM-ART" .
+
 <https://bio.tools/hamap> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2974" ;
-            sc:name "Protein sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_2974" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2974" ;
+            sc:encodingFormat "http://edamontology.org/format_1963" ;
+            sc:name "Protein sequence (raw)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0623,
@@ -233925,7 +238139,7 @@ Halcyon incorporates neural-network techniques frequently used in the field of m
     biotools:primaryContact <http://orcid.org/0000-0003-2148-9135> .
 
 <https://bio.tools/hamap-scan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -233943,7 +238157,7 @@ Halcyon incorporates neural-network techniques frequently used in the field of m
     biotools:primaryContact "ExPASy helpdesk" .
 
 <https://bio.tools/hamap_sparql> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -233964,7 +238178,7 @@ HAMAP is a system for the classification and annotation of protein sequences. It
     sc:url "https://hamap.expasy.org" .
 
 <https://bio.tools/hamdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0634,
@@ -233983,7 +238197,7 @@ HAMAP is a system for the classification and annotation of protein sequences. It
     biotools:primaryContact "Support" .
 
 <https://bio.tools/hamdetector> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0154,
@@ -234003,7 +238217,7 @@ HAMAP is a system for the classification and annotation of protein sequences. It
     sc:url "https://github.com/HAMdetector/Escape.jl" .
 
 <https://bio.tools/hamheat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_2269 ;
@@ -234019,7 +238233,7 @@ Hamming distance calculation from multiple sequence data for heatmap visualizati
     sc:url "https://github.com/alexeyrakov/HamHeat" .
 
 <https://bio.tools/hammlet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0797,
@@ -234035,7 +238249,7 @@ Hamming distance calculation from multiple sequence data for heatmap visualizati
     biotools:primaryContact "John Wiedenhoeft" .
 
 <https://bio.tools/hammock> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3510 ;
@@ -234049,8 +238263,29 @@ Hamming distance calculation from multiple sequence data for heatmap visualizati
     sc:url "http://www.recamo.cz/en/software/hammock-cluster-peptides/" ;
     biotools:primaryContact "Adam Krejci" .
 
+<https://bio.tools/hamroaster> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0625,
+        edam:topic_0769,
+        edam:topic_3174,
+        edam:topic_3277,
+        edam:topic_3305 ;
+    sc:citation <https://doi.org/10.1101/2022.01.13.476279> ;
+    sc:description "Benchmarking software to predict antibiotic resistance phenotypes in shotgun metagenomes using simulated data." ;
+    sc:featureList edam:operation_0310,
+        edam:operation_3196,
+        edam:operation_3482 ;
+    sc:isAccessibleForFree true ;
+    sc:license "CC0-1.0" ;
+    sc:name "hAMRoaster" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/ewissel/hAMRoaster" .
+
 <https://bio.tools/hamster> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3518 ;
@@ -234067,10 +238302,10 @@ Hamming distance calculation from multiple sequence data for heatmap visualizati
 
 <https://bio.tools/hana> a sc:SoftwareApplication ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Web application" ;
     sc:applicationSubCategory edam:topic_2640,
@@ -234092,7 +238327,7 @@ Hamming distance calculation from multiple sequence data for heatmap visualizati
     biotools:primaryContact "Daniel Georgiev" .
 
 <https://bio.tools/handle-on-qol> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3071,
@@ -234111,7 +238346,7 @@ This website uses cookies. By continuing to browse the site you are agreeing to
     sc:url "http://www.handle-on-qol.com" .
 
 <https://bio.tools/handycnv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0625,
@@ -234131,30 +238366,8 @@ This website uses cookies. By continuing to browse the site you are agreeing to
     sc:url "https://github.com/JH-Zhou/HandyCNV" ;
     biotools:primaryContact "Yuangang Shi" .
 
-<https://bio.tools/hank> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0196,
-        edam:topic_0659,
-        edam:topic_2229,
-        edam:topic_3308,
-        edam:topic_3512 ;
-    sc:citation <https://doi.org/10.1093/NAR/GKZ928>,
-        "pmcid:PMC6868439",
-        "pubmed:31665448" ;
-    sc:description """Assembly and annotation of the mitochondrial minicircle genome of a differentiation-competent strain of Trypanosoma brucei.
-
-Kinetoplastids are protists defined by one of the most complex mitochondrial genomes in nature, the kinetoplast. In the sleeping sickness parasite Trypanosoma brucei, the kinetoplast is a chain mail-like network of two types of interlocked DNA molecules: a few dozen ∼23-kb maxicircles (homologs of the mitochondrial genome of other eukaryotes) and thousands of ∼1-kb minicircles. Maxicircles encode components of respiratory chain complexes and the mitoribosome. Several maxicircle-encoded mRNAs undergo extensive post-transcriptional RNA editing via addition and deletion of uridines.
-
-||| COMMON LINK WITH (PUB. & NAME DIFFERENT) bio.tools/beast (BIO.ED.AC.UK).
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'minicircle', 'kinetoplast', 'maxicircles'""" ;
-    sc:featureList edam:operation_0308,
-        edam:operation_0310,
-        edam:operation_3096 ;
-    sc:name "hank" ;
-    sc:url "http://hank.bio.ed.ac.uk" .
-
 <https://bio.tools/hansa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_2533,
@@ -234173,7 +238386,7 @@ Kinetoplastids are protists defined by one of the most complex mitochondrial gen
     biotools:primaryContact "H.A.Nagarajaram" .
 
 <https://bio.tools/hantareg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0634,
@@ -234190,7 +238403,7 @@ Kinetoplastids are protists defined by one of the most complex mitochondrial gen
     biotools:primaryContact <https://orcid.org/0000-0002-0256-6628> .
 
 <https://bio.tools/hap-ibd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0199,
@@ -234212,7 +238425,7 @@ The hap-ibd program detects identity-by-descent (IBD) segments and homozygosity-
     sc:url "https://github.com/browning-lab/hap-ibd" .
 
 <https://bio.tools/hap10> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0625,
@@ -234234,7 +238447,7 @@ We are providing ful support for this package. Feel free to ask your questions t
     sc:url "https://sourceforge.net/projects/SDhaP/" .
 
 <https://bio.tools/hapLOH> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2885,
@@ -234253,7 +238466,7 @@ We are providing ful support for this package. Feel free to ask your questions t
     biotools:primaryContact "Selina Vattathil" .
 
 <https://bio.tools/hapal> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0602,
@@ -234267,7 +238480,7 @@ We are providing ful support for this package. Feel free to ask your questions t
     sc:url "http://www.stt.msu.edu/~cui/software.html" .
 
 <https://bio.tools/hapassembly> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196 ;
     sc:description "An approach to finding optimal solutions for the haplotype assembly problem under the minimum-error-correction (MEC) model." ;
@@ -234278,7 +238491,7 @@ We are providing ful support for this package. Feel free to ask your questions t
     sc:url "http://rnc.r.dendai.ac.jp/hapAssembly.html" .
 
 <https://bio.tools/hapassoc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2885,
@@ -234296,7 +238509,7 @@ We are providing ful support for this package. Feel free to ask your questions t
     biotools:primaryContact "Brad McNeney" .
 
 <https://bio.tools/hapchat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:citation <https://doi.org/10.1186/s12859-018-2253-8> ;
@@ -234312,7 +238525,7 @@ We are providing ful support for this package. Feel free to ask your questions t
     biotools:primaryContact "Murray D. Patterson" .
 
 <https://bio.tools/hapcluster> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3053 ;
     sc:citation <https://doi.org/10.1002/gepi.20134> ;
@@ -234327,7 +238540,7 @@ We are providing ful support for this package. Feel free to ask your questions t
     biotools:primaryContact "Thomas Mailund" .
 
 <https://bio.tools/hapcol> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btv495> ;
@@ -234345,22 +238558,22 @@ We are providing ful support for this package. Feel free to ask your questions t
 
 <https://bio.tools/hapcut2> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1383" ;
-            sc:name "Nucleic acid sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_1383" ],
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence variations" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ] ;
+            sc:additionalType "http://edamontology.org/data_1383" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Nucleic acid sequence alignment" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1863" ;
-            sc:name "Haplotype map" ;
-            sc:sameAs "http://edamontology.org/data_1863" ],
+            sc:additionalType "http://edamontology.org/data_1863" ;
+            sc:encodingFormat "http://edamontology.org/format_1964" ;
+            sc:name "Haplotype map" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence variations" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description """HapCUT2 is a maximum-likelihood-based tool for assembling haplotypes from DNA sequence reads, designed to "just work" with excellent speed and accuracy across a range of long- and short-read sequencing technologies.
 The output is in Haplotype block format described here: https://github.com/vibansal/HapCUT2/blob/master/outputformat.md""" ;
     sc:featureList edam:operation_0487,
@@ -234373,8 +238586,27 @@ The output is in Haplotype block format described here: https://github.com/viban
         "1.3.1" ;
     sc:url "https://github.com/vibansal/HapCUT2" .
 
+<https://bio.tools/hapdipkinship> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0621,
+        edam:topic_3056,
+        edam:topic_3796 ;
+    sc:citation <https://doi.org/10.1093/bioinformatics/btac293>,
+        "pubmed:35482481" ;
+    sc:description "A package containing algorithms, exKING-robust and KIMGENS, to estimate kinship in haploid-diploid mixed populations." ;
+    sc:featureList edam:operation_0484,
+        edam:operation_3196 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "HapDipKinship" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/YenWenWang/HapDipKinship" .
+
 <https://bio.tools/hapedit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0622,
@@ -234396,7 +238628,7 @@ The output is in Haplotype block format described here: https://github.com/viban
     biotools:primaryContact "Sanghyun Park" .
 
 <https://bio.tools/hapevolution> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0654,
@@ -234411,26 +238643,26 @@ The output is in Haplotype block format described here: https://github.com/viban
 
 <https://bio.tools/hapfabia> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ] ;
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence variations" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1276" ;
-            sc:name "Nucleic acid features" ;
-            sc:sameAs "http://edamontology.org/data_1276" ],
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1863" ;
-            sc:name "Haplotype map" ;
-            sc:sameAs "http://edamontology.org/data_1863" ],
+            sc:additionalType "http://edamontology.org/data_1863" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Haplotype map" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ],
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Plot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1276" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Nucleic acid features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0102,
@@ -234451,7 +238683,7 @@ The output is in Haplotype block format described here: https://github.com/viban
     biotools:primaryContact <http://orcid.org/0000-0001-7449-2528> .
 
 <https://bio.tools/hapflk> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3053,
@@ -234469,7 +238701,7 @@ The output is in Haplotype block format described here: https://github.com/viban
     sc:url "https://forge-dga.jouy.inra.fr/projects/hapflk" .
 
 <https://bio.tools/hapflow> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0092,
@@ -234491,7 +238723,7 @@ The output is in Haplotype block format described here: https://github.com/viban
         "Mitchell J Sullivan" .
 
 <https://bio.tools/haphpipe> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0102,
@@ -234513,7 +238745,7 @@ Next-generation sequencing (NGS) offers a powerful opportunity to identify low-a
     sc:url "https://gwcbi.github.io/haphpipe_docs/" .
 
 <https://bio.tools/hapi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3053 ;
     sc:citation <https://doi.org/10.1186/gb-2010-11-10-r108> ;
@@ -234525,7 +238757,7 @@ Next-generation sequencing (NGS) offers a powerful opportunity to identify low-a
     sc:url "http://hapi.csail.mit.edu/" .
 
 <https://bio.tools/hapi-ur> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3053,
         edam:topic_3277 ;
@@ -234537,8 +238769,27 @@ Next-generation sequencing (NGS) offers a powerful opportunity to identify low-a
     sc:softwareVersion "1.01" ;
     sc:url "http://code.google.com/p/hapi-ur/" .
 
+<https://bio.tools/hapl-o-mat> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0625,
+        edam:topic_2830,
+        edam:topic_3421 ;
+    sc:citation <https://doi.org/10.1016/J.HUMIMM.2021.11.002>,
+        "pubmed:34799151" ;
+    sc:description "Graphical user interface for the haplotype frequency estimation software Hapl-o-Mat." ;
+    sc:featureList edam:operation_0487,
+        edam:operation_3196 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "Hapl-o-Mat" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/DKMS/hapl-o-Mat" .
+
 <https://bio.tools/hapler> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0196,
@@ -234556,7 +238807,7 @@ Next-generation sequencing (NGS) offers a powerful opportunity to identify low-a
         "Shawn O'Neil" .
 
 <https://bio.tools/haplo-st> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0199,
@@ -234579,7 +238830,7 @@ Haplo-ST is a pipeline for performing standardized whole-genome multi-locus sequ
     sc:url "https://github.com/swarnalilouha/Haplo-ST" .
 
 <https://bio.tools/haploblock> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_2885,
@@ -234597,7 +238848,7 @@ Haplo-ST is a pipeline for performing standardized whole-genome multi-locus sequ
     sc:url "http://www.cs.technion.ac.il/labs/cbl/haploblock/" .
 
 <https://bio.tools/haplocheck> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0622,
@@ -234615,7 +238866,7 @@ Haplocheck detects contamination in mtDNA AND WGS sequencing studies by analyzin
     sc:url "https://github.com/genepi/haplocheck" .
 
 <https://bio.tools/haploclique> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0781,
         edam:topic_3053,
@@ -234631,7 +238882,7 @@ Haplocheck detects contamination in mtDNA AND WGS sequencing studies by analyzin
     sc:url "https://github.com/cbg-ethz/haploclique" .
 
 <https://bio.tools/haploclusters> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0634,
@@ -234646,7 +238897,7 @@ Haplocheck detects contamination in mtDNA AND WGS sequencing studies by analyzin
     biotools:primaryContact "Melanie Bahlo" .
 
 <https://bio.tools/haploconfig> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3053,
@@ -234663,7 +238914,7 @@ Haplocheck detects contamination in mtDNA AND WGS sequencing studies by analyzin
     biotools:primaryContact "Noah Rosenberg" .
 
 <https://bio.tools/haplogrep> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0625,
@@ -234683,7 +238934,7 @@ Haplocheck detects contamination in mtDNA AND WGS sequencing studies by analyzin
     biotools:primaryContact "Florian Kronenberg" .
 
 <https://bio.tools/haplohseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0625,
@@ -234699,7 +238950,7 @@ Haplocheck detects contamination in mtDNA AND WGS sequencing studies by analyzin
     biotools:primaryContact "Paul Scheet' lab" .
 
 <https://bio.tools/haploi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3053 ;
     sc:citation <https://doi.org/10.1214/08-AOAS225> ;
@@ -234712,7 +238963,7 @@ Haplocheck detects contamination in mtDNA AND WGS sequencing studies by analyzin
     sc:url "http://www.sailing.cs.cmu.edu/main/?page_id=475" .
 
 <https://bio.tools/haplomaker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_3307 ;
@@ -234727,7 +238978,7 @@ Haplocheck detects contamination in mtDNA AND WGS sequencing studies by analyzin
     sc:url "https://github.com/mfruzan/HaploMaker" .
 
 <https://bio.tools/haplopainter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0634,
@@ -234749,7 +239000,7 @@ Haplocheck detects contamination in mtDNA AND WGS sequencing studies by analyzin
     sc:url "http://haplopainter.sourceforge.net/" .
 
 <https://bio.tools/haplor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_2885,
@@ -234771,7 +239022,7 @@ Haplocheck detects contamination in mtDNA AND WGS sequencing studies by analyzin
     biotools:primaryContact "Ilya Y. Zhbannikov" .
 
 <https://bio.tools/haplorec> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3056 ;
     sc:citation <https://doi.org/10.1186/1471-2105-7-542> ;
@@ -234784,7 +239035,7 @@ Haplocheck detects contamination in mtDNA AND WGS sequencing studies by analyzin
     sc:url "https://www.cs.helsinki.fi/group/genetics/haplotyping.html" .
 
 <https://bio.tools/haploscribe> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3053,
@@ -234801,7 +239052,7 @@ Haplocheck detects contamination in mtDNA AND WGS sequencing studies by analyzin
     biotools:primaryContact "Gustavo Glusman" .
 
 <https://bio.tools/haplosearch> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654 ;
@@ -234811,7 +239062,7 @@ Haplocheck detects contamination in mtDNA AND WGS sequencing studies by analyzin
     sc:url "http://www.haplosite.com/haplosearch/" .
 
 <https://bio.tools/haplosuite> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0625,
@@ -234827,8 +239078,32 @@ Haplocheck detects contamination in mtDNA AND WGS sequencing studies by analyzin
     sc:softwareHelp <http://phg.nus.edu.sg/#about> ;
     sc:url "http://www.statgen.nus.edu.sg" .
 
+<https://bio.tools/haplosync> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_0196,
+        edam:topic_0654,
+        edam:topic_0780,
+        edam:topic_3500 ;
+    sc:citation <https://doi.org/10.1101/2021.11.11.468134> ;
+    sc:description "Tools for haplotype-wise reconstruction of pseudomolecules" ;
+    sc:featureList edam:operation_0523,
+        edam:operation_0524,
+        edam:operation_0525,
+        edam:operation_3216,
+        edam:operation_3454 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "HaploSync" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://github.com/andreaminio/HaploSync/tree/master/manual> ;
+    sc:url "https://github.com/andreaminio/haplosync" .
+
 <https://bio.tools/haplotracker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0199,
@@ -234850,7 +239125,7 @@ For primer/probe design for mtDNA.""" ;
     sc:url "https://haplotracker.cau.ac.kr" .
 
 <https://bio.tools/haplotype_explorer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3293,
         edam:topic_3305,
@@ -234868,7 +239143,7 @@ HaplotypeExplorer is an interactive haplotype network viewer for spatiotemporal
     sc:url "https://github.com/TKSjp/HaplotypeExplorer" .
 
 <https://bio.tools/haplotypeanalysispipeline> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3056 ;
     sc:description "This pipeline prepares the population genotypes ped/map files, runs them on SHAPEIT, optionally uses the results as input for IMPUTE2 using the 1000G phase III reference panel, and finally converts them to Chromopainter_v2 formats in order to perform with fineSTRUCTURE fs 2.0.7 two clusterings of donors and recipients respectively, and with Chromopainter_v2 a painting of the resulting recipient clusters out of the donor clusters." ;
@@ -234882,7 +239157,7 @@ HaplotypeExplorer is an interactive haplotype network viewer for spatiotemporal
     biotools:primaryContact <https://orcid.org/0000-0002-0222-4273> .
 
 <https://bio.tools/haplotyper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0102 ;
     sc:description "Genotype Transposer is an excel macro that will format data from an Excel spreadsheet to a format ready to be used by the program “Arlequin“. After which, other macros will extract the haplotype information, calculate linkage disequilibrium between markers, and prepare an input sheet for the “GOLD” program. Then, a last macro can reconstruct the haplotypes of each individual in the population,using a maximum likelihood method and the haplotypes present in the population as proposed by Arlequin." ;
@@ -234893,8 +239168,32 @@ HaplotypeExplorer is an interactive haplotype network viewer for spatiotemporal
     sc:softwareVersion "1.0" ;
     sc:url "http://www.bioinformatics.org/macroshack/programs/haplotyper/description.html" .
 
+<https://bio.tools/haplotypetools> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0625,
+        edam:topic_2885,
+        edam:topic_3127,
+        edam:topic_3168,
+        edam:topic_3293 ;
+    sc:citation <https://doi.org/10.1186/S12859-021-04473-1>,
+        "pmcid:PMC8607637",
+        "pubmed:34809571" ;
+    sc:description "A toolkit for accurately identifying recombination and recombinant genotypes." ;
+    sc:featureList edam:operation_0451,
+        edam:operation_0487,
+        edam:operation_3196,
+        edam:operation_3454 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "HaplotypeTools" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/rhysf/HaplotypeTools" .
+
 <https://bio.tools/haploview> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_3517 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/bth457> ;
@@ -234909,7 +239208,7 @@ HaplotypeExplorer is an interactive haplotype network viewer for spatiotemporal
     sc:url "https://www.broadinstitute.org/haploview/haploview" .
 
 <https://bio.tools/haplowser> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation "pubmed:19561337" ;
@@ -234925,7 +239224,7 @@ HaplotypeExplorer is an interactive haplotype network viewer for spatiotemporal
     sc:url "http://haplowser-free-download.softwares7.com/" .
 
 <https://bio.tools/hapmuc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_2533,
@@ -234939,8 +239238,22 @@ HaplotypeExplorer is an interactive haplotype network viewer for spatiotemporal
     sc:url "https://github.com/usuyama/hapmuc" ;
     biotools:primaryContact "Naoto Usuyama" .
 
+<https://bio.tools/hapog> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0196,
+        edam:topic_0622 ;
+    sc:citation <https://doi.org/10.1093/nargab/lqab034> ;
+    sc:description "Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads. It capable of incorporating phasing information from high-quality reads (short or long-reads) to polish genome assemblies and in particular assemblies of diploid and heterozygous genomes." ;
+    sc:featureList edam:operation_0525,
+        edam:operation_2425 ;
+    sc:license "CECILL-2.1" ;
+    sc:name "Hapo-G" ;
+    sc:softwareVersion "1.3.2" ;
+    sc:url "https://github.com/institut-de-genomique/HAPO-G" .
+
 <https://bio.tools/happe_er> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_2269 ;
@@ -234958,7 +239271,7 @@ HaplotypeExplorer is an interactive haplotype network viewer for spatiotemporal
     sc:url "https://github.com/PINE-Lab/HAPPE" .
 
 <https://bio.tools/happi_gwas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2885,
@@ -234972,7 +239285,7 @@ HAPPI GWAS is a genome-wide association study (GWAS) tool written in R.""" ;
     sc:url "https://github.com/Angelovici-Lab/HAPPI.GWAS.git" .
 
 <https://bio.tools/happilee> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3304,
@@ -234991,7 +239304,7 @@ HAPPI GWAS is a genome-wide association study (GWAS) tool written in R.""" ;
     sc:url "https://github.com/PINE-Lab/HAPPE" .
 
 <https://bio.tools/happy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0634,
@@ -235008,7 +239321,7 @@ HAPPI GWAS is a genome-wide association study (GWAS) tool written in R.""" ;
     biotools:primaryContact "Peter Kraft" .
 
 <https://bio.tools/hapreads> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_3293 ;
@@ -235024,7 +239337,7 @@ HAPPI GWAS is a genome-wide association study (GWAS) tool written in R.""" ;
     biotools:primaryContact "Jin Zhang" .
 
 <https://bio.tools/hapredictor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0634,
@@ -235043,7 +239356,7 @@ HAPPI GWAS is a genome-wide association study (GWAS) tool written in R.""" ;
     biotools:primaryContact "Teresa Przytycka" .
 
 <https://bio.tools/hapsim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0634,
@@ -235058,7 +239371,7 @@ HAPPI GWAS is a genome-wide association study (GWAS) tool written in R.""" ;
     biotools:primaryContact "Bernard North" .
 
 <https://bio.tools/hapsolo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0622,
@@ -235077,7 +239390,7 @@ HapSolo is compatible with Python 2.7 and requires the PANDAS package be install
     sc:url "https://github.com/esolares/HapSolo" .
 
 <https://bio.tools/haptagger> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2885,
         edam:topic_3053 ;
@@ -235090,8 +239403,21 @@ HapSolo is compatible with Python 2.7 and requires the PANDAS package be install
     sc:url "http://www.csie.ntu.edu.tw/~kmchao/tools/HapTagger/index.htm" ;
     biotools:primaryContact "Kun-Mao Chao" .
 
+<https://bio.tools/haptendb> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:description "Haptendb is a database of haptens which provide comprehensive information about the Hapten molecule, ways to raise antibodies against particular group of haptens, specificity and cross reactivity of raised antibody with related haptens, use of antibodies in constructing cost effective and simple detection kits." ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "haptendb" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/haptendb/> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/haptendb/" .
+
 <https://bio.tools/haptree> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3053 ;
@@ -235106,7 +239432,7 @@ HapSolo is compatible with Python 2.7 and requires the PANDAS package be install
     sc:url "http://groups.csail.mit.edu/cb/haptree/" .
 
 <https://bio.tools/hapzipper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation "pubmed:22844100" ;
@@ -235120,7 +239446,7 @@ HapSolo is compatible with Python 2.7 and requires the PANDAS package be install
     biotools:primaryContact "Bader Lab" .
 
 <https://bio.tools/hare> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0218,
         edam:topic_0769,
@@ -235140,7 +239466,7 @@ This open-source software package implements two components of a pipeline for id
     sc:url "https://github.com/OSU-slatelab/HARE/" .
 
 <https://bio.tools/harman> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2269,
@@ -235161,7 +239487,7 @@ This open-source software package implements two components of a pipeline for id
     biotools:primaryContact "Jason Ross" .
 
 <https://bio.tools/harmonies> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3168,
@@ -235178,7 +239504,7 @@ This is the Github page for the code used in manuscript S. Jiang et al 2019. HAR
     sc:url "https://github.com/shuangj00/HARMONIES" .
 
 <https://bio.tools/harmonization> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3305,
         edam:topic_3384,
@@ -235194,7 +239520,7 @@ Harmonization of diffusion MRI datasets across scanners.""" ;
     sc:url "http://github.com/samuelstjean/harmonization" .
 
 <https://bio.tools/harmony> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0154,
@@ -235218,7 +239544,7 @@ Harmonization of diffusion MRI datasets across scanners.""" ;
         "Dr.R. Sowdhamini" .
 
 <https://bio.tools/harmony-r> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0625,
@@ -235242,7 +239568,7 @@ Harmony has been tested on R versions >= 3.4. Please consult the DESCRIPTION fil
     sc:url "https://github.com/immunogenomics/harmony" .
 
 <https://bio.tools/harp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0130,
@@ -235268,7 +239594,7 @@ HARP (a database of Hansen's Disease Antimicrobial Resistance Profiles) is an in
     sc:url "https://harp-leprosy.org" .
 
 <https://bio.tools/harsh> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3053,
         edam:topic_3168 ;
@@ -235284,7 +239610,7 @@ HARP (a database of Hansen's Disease Antimicrobial Resistance Profiles) is an in
     sc:url "http://genetics.cs.ucla.edu/harsh/" .
 
 <https://bio.tools/harshlight> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -235305,7 +239631,7 @@ HARP (a database of Hansen's Disease Antimicrobial Resistance Profiles) is an in
     biotools:primaryContact "Maurizio Pellegrino" .
 
 <https://bio.tools/harvester> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0121,
@@ -235324,7 +239650,7 @@ HARP (a database of Hansen's Disease Antimicrobial Resistance Profiles) is an in
     biotools:primaryContact "Urban Liebel" .
 
 <https://bio.tools/harvestman> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0625,
@@ -235343,18 +239669,18 @@ Contribute to cmlh-gp/harvestman-public development by creating an account on Gi
 
 <https://bio.tools/hasappy> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2975" ;
-            sc:name "Nucleic acid sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_2975" ],
+            sc:additionalType "http://edamontology.org/data_2093" ;
+            sc:encodingFormat "http://edamontology.org/format_2571" ;
+            sc:name "Data reference" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2093" ;
-            sc:name "Data reference" ;
-            sc:sameAs "http://edamontology.org/data_2093" ] ;
+            sc:additionalType "http://edamontology.org/data_2975" ;
+            sc:encodingFormat "http://edamontology.org/format_2571" ;
+            sc:name "Nucleic acid sequence (raw)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0920" ;
-            sc:name "Genotype/phenotype report" ;
-            sc:sameAs "http://edamontology.org/data_0920" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0920" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Genotype/phenotype report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0625,
@@ -235376,7 +239702,7 @@ Contribute to cmlh-gp/harvestman-public development by creating an account on Gi
     biotools:primaryContact "Giulio Di Minin" .
 
 <https://bio.tools/hash-cgMLST> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
@@ -235401,8 +239727,33 @@ Java version 8 or later (required for nextflow).""" ;
     sc:name "hash-cgMLST" ;
     sc:url "https://github.com/davideyre/hash-cgmlst" .
 
+<https://bio.tools/hashseq> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0632,
+        edam:topic_0659,
+        edam:topic_2885,
+        edam:topic_3170,
+        edam:topic_3697 ;
+    sc:citation <https://doi.org/10.1128/MSYSTEMS.00697-21>,
+        "pmcid:PMC8577285",
+        "pubmed:34751586" ;
+    sc:description "HashSeq infers true biological 16S rRNA sequence variants from sequence errors generated from an Illumina sequencing instrument." ;
+    sc:featureList edam:operation_3192,
+        edam:operation_3227,
+        edam:operation_3435,
+        edam:operation_3659,
+        edam:operation_3695 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Other" ;
+    sc:name "HashSeq" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/FarnazFouladi/HashSeq" .
+
 <https://bio.tools/haslr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
@@ -235420,7 +239771,7 @@ HASLR is a tool for rapid genome assembly of long sequencing reads. HASLR is a h
     sc:url "https://github.com/vpc-ccg/haslr" .
 
 <https://bio.tools/hasp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0804,
@@ -235441,7 +239792,7 @@ HASLR is a tool for rapid genome assembly of long sequencing reads. HASLR is a h
     biotools:primaryContact "Support page" .
 
 <https://bio.tools/hast> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0199,
@@ -235462,7 +239813,7 @@ Partition stLFR reads based on trio-binning algorithm using parentally unique ma
     sc:url "https://github.com/BGI-Qingdao/HAST" .
 
 <https://bio.tools/haste> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0611,
@@ -235484,7 +239835,7 @@ Smart middleware for working with a variety of storage media with Scientific Com
     sc:url "http://haste.research.it.uu.se/" .
 
 <https://bio.tools/haste_toolkit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_3316 ;
     sc:author "Ben Blamey" ;
@@ -235494,7 +239845,7 @@ Smart middleware for working with a variety of storage media with Scientific Com
     sc:url "https://github.com/HASTE-project" .
 
 <https://bio.tools/hasten> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2275,
         edam:topic_3047,
@@ -235520,7 +239871,7 @@ There is also simulation mode, which allows you to run benchmarks using existing
     sc:url "https://github.com/TuomoKalliokoski/HASTEN" .
 
 <https://bio.tools/hatk> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0154,
@@ -235537,7 +239888,7 @@ There is also simulation mode, which allows you to run benchmarks using existing
     sc:url "https://github.com/WansonChoi/HATK" .
 
 <https://bio.tools/hatseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3518 ;
@@ -235553,7 +239904,7 @@ There is also simulation mode, which allows you to run benchmarks using existing
     sc:url "http://hema13.erasmusmc.nl/index.php/Hypergeometric_Analysis_of_Tiling-arrays" .
 
 <https://bio.tools/hattci> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3511 ;
@@ -235568,7 +239919,7 @@ There is also simulation mode, which allows you to run benchmarks using existing
     biotools:primaryContact "Marina Pereira" .
 
 <https://bio.tools/havoc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0749,
@@ -235585,7 +239936,7 @@ HAVoC, a bioinformatic pipeline for reference-based consensus assembly and linea
     sc:url "https://www.helsinki.fi/en/projects/havoc" .
 
 <https://bio.tools/hawkeye> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0196 ;
@@ -235602,7 +239953,7 @@ HAVoC, a bioinformatic pipeline for reference-based consensus assembly and linea
     biotools:primaryContact "Michael Schatz" .
 
 <https://bio.tools/haystack> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0622,
@@ -235623,7 +239974,7 @@ HAVoC, a bioinformatic pipeline for reference-based consensus assembly and linea
         "Luca Pinello" .
 
 <https://bio.tools/hba-deals> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0749,
@@ -235647,7 +239998,7 @@ Hierarchical Bayesian Analysis of Differential Expression and ALternative Splici
     sc:url "https://github.com/TheJacksonLaboratory/HBA-DEALS" .
 
 <https://bio.tools/hbat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_2814 ;
@@ -235661,7 +240012,7 @@ Hierarchical Bayesian Analysis of Differential Expression and ALternative Splici
     biotools:primaryContact "Abhishek Tiwari" .
 
 <https://bio.tools/hbayesdm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3334,
         edam:topic_3419,
@@ -235682,7 +240033,7 @@ Hierarchical Bayesian Analysis of Differential Expression and ALternative Splici
     biotools:primaryContact "Woo-Young Ahn" .
 
 <https://bio.tools/hca> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3542 ;
@@ -235698,7 +240049,7 @@ Hierarchical Bayesian Analysis of Differential Expression and ALternative Splici
     biotools:primaryContact "Isabelle Callebaut" .
 
 <https://bio.tools/hca-vision> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3336 ;
     sc:citation <https://doi.org/10.1177/1087057110382894>,
@@ -235712,7 +240063,7 @@ Hierarchical Bayesian Analysis of Differential Expression and ALternative Splici
     sc:url "http://www.hca-vision.com/" .
 
 <https://bio.tools/hcase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0209,
@@ -235734,7 +240085,7 @@ This repository contains source code of the Hilbert-Curve Assisted Structure Emb
     sc:url "https://github.com/ncats/hcase" .
 
 <https://bio.tools/hcgres> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3360,
@@ -235751,7 +240102,7 @@ hCG trophoblastic tumor or neoplasia.""" ;
     sc:url "https://www.biomarker-kinetics.org/hCG" .
 
 <https://bio.tools/hclust2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3174,
         edam:topic_3301 ;
@@ -235769,7 +240120,7 @@ hCG trophoblastic tumor or neoplasia.""" ;
     biotools:primaryContact "Segata Lab" .
 
 <https://bio.tools/hcmb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0654,
@@ -235785,20 +240136,41 @@ hCG trophoblastic tumor or neoplasia.""" ;
     biotools:primaryContact <https://orcid.org/0000-0002-9427-383X>,
         "Ke Zhou" .
 
+<https://bio.tools/hcoronavirusesdb> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0080,
+        edam:topic_0121,
+        edam:topic_2830,
+        edam:topic_3930,
+        edam:topic_3966 ;
+    sc:citation <https://doi.org/10.1093/DATABASE/BAAC017>,
+        "pubmed:35348639" ;
+    sc:description "A genetic and proteomic database for the SARS-CoV, MERS-CoV, and SARS-COV-2." ;
+    sc:featureList edam:operation_0416,
+        edam:operation_2421,
+        edam:operation_2422 ;
+    sc:license "Apache-2.0" ;
+    sc:name "hCoronavirusesDB" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://hcoronaviruses.net/" .
+
 <https://bio.tools/hcsnip> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0928" ;
-            sc:name "Gene expression profile" ;
-            sc:sameAs "http://edamontology.org/data_0928" ] ;
+            sc:additionalType "http://edamontology.org/data_0928" ;
+            sc:encodingFormat "http://edamontology.org/format_2058" ;
+            sc:name "Gene expression profile" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ],
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Plot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1772" ;
-            sc:name "Score" ;
-            sc:sameAs "http://edamontology.org/data_1772" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1772" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Score" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -235818,14 +240190,12 @@ hCG trophoblastic tumor or neoplasia.""" ;
 
 <https://bio.tools/hcvivdb> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1048" ;
-            sc:name "Database ID" ;
-            sc:sameAs "http://edamontology.org/data_1048" ] ;
+            sc:additionalType "http://edamontology.org/data_1048" ;
+            sc:name "Database ID" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2080" ;
-            sc:name "Database search results" ;
-            sc:sameAs "http://edamontology.org/data_2080" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2080" ;
+            sc:name "Database search results" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0781,
         edam:topic_1317 ;
@@ -235843,7 +240213,7 @@ hCG trophoblastic tumor or neoplasia.""" ;
     sc:url "http://www.hcvivdb.org/" .
 
 <https://bio.tools/hcvpred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0154,
@@ -235866,7 +240236,7 @@ Enter your input molecule(s) in SMILES notation Insert example data.""" ;
     sc:url "http://codes.bio/hcvpred/" .
 
 <https://bio.tools/hd-explosion> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0078,
@@ -235886,7 +240256,7 @@ You may select up to 5 files to upload.""" ;
     sc:url "http://hd-explosion.utdallas.edu" .
 
 <https://bio.tools/hdac3i-finder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2258,
@@ -235903,7 +240273,7 @@ HDAC3i-Finder is a python GUI application for virtually screening for HDAC3 inhi
     sc:url "https://github.com/jwxia2014/HDAC3i-Finder" .
 
 <https://bio.tools/hdam> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_2533,
@@ -235923,7 +240293,7 @@ HDAC3i-Finder is a python GUI application for virtually screening for HDAC3 inhi
     biotools:primaryContact "Support" .
 
 <https://bio.tools/hdf5array> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3071 ;
@@ -235939,8 +240309,27 @@ HDAC3i-Finder is a python GUI application for virtually screening for HDAC3 inhi
     sc:url "http://bioconductor.org/packages/release/bioc/html/HDF5Array.html" ;
     biotools:primaryContact "Hervé Pagès" .
 
+<https://bio.tools/hdflex> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Desktop application" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_2269,
+        edam:topic_3070,
+        edam:topic_3520 ;
+    sc:citation <https://doi.org/10.1021/acs.analchem.1c05339>,
+        "pubmed:35263087" ;
+    sc:description "Software for flexible high structural resolution of hydrogen/deuterium-exchange mass spectrometry data." ;
+    sc:featureList edam:operation_0404,
+        edam:operation_3435,
+        edam:operation_3659 ;
+    sc:isAccessibleForFree true ;
+    sc:name "HDfleX" ;
+    sc:operatingSystem "Mac",
+        "Windows" ;
+    sc:url "http://hdl.handle.net/10871/127982" .
+
 <https://bio.tools/hdg-select> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0634,
@@ -235956,7 +240345,7 @@ HDAC3i-Finder is a python GUI application for virtually screening for HDAC3 inhi
     sc:url "https://github.com/Shilan-Jaff/HDG_select" .
 
 <https://bio.tools/hdmac> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2640,
@@ -235975,8 +240364,29 @@ HDMAC is a web-based shiny App that provides high-dimension regression analysis
     sc:name "HDMAC" ;
     sc:url "https://github.com/chung-R/HD-MAC" .
 
+<https://bio.tools/hdmc> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_2229,
+        edam:topic_3170,
+        edam:topic_3308,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAB821>,
+        "pubmed:34864918" ;
+    sc:description "HDMC (Hierarchical Distribution Matching and Contrastive learning) is a novel deep learning based framework for batch effect removal in scRNA-seq data." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_3432,
+        edam:operation_3658 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "HDMC" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/zhanglabNKU/HDMC" .
+
 <https://bio.tools/hdock> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0128,
@@ -235995,14 +240405,14 @@ HDMAC is a web-based shiny App that provides high-dimension regression analysis
 
 <https://bio.tools/hdtd> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Gene expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ] ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_2058" ;
+            sc:name "Gene expression data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1669" ;
-            sc:name "P-value" ;
-            sc:sameAs "http://edamontology.org/data_1669" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1669" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "P-value" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -236024,7 +240434,7 @@ HDMAC is a web-based shiny App that provides high-dimension regression analysis
     biotools:primaryContact <http://orcid.org/0000-0002-5965-1639> .
 
 <https://bio.tools/hdvdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application",
         "Web service" ;
@@ -236050,26 +240460,26 @@ The Hepatitis D Virus (HDV) Database, HDVdb contains comprehensive data on HDV g
 
 <https://bio.tools/hdx_workbench> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ],
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein structure" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ],
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Peptide identification" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ] ;
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:encodingFormat "http://edamontology.org/format_3712" ;
+            sc:name "Mass spectrometry data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2992" ;
-            sc:name "Protein structure image" ;
-            sc:sameAs "http://edamontology.org/data_2992" ],
+            sc:additionalType "http://edamontology.org/data_2992" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Protein structure image" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1537" ;
-            sc:name "Protein structure report" ;
-            sc:sameAs "http://edamontology.org/data_1537" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1537" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Protein structure report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -236084,7 +240494,7 @@ The Hepatitis D Virus (HDV) Database, HDVdb contains comprehensive data on HDV g
     sc:url "http://hdx.florida.scripps.edu/hdx_workbench/Home.html" .
 
 <https://bio.tools/hdxfit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -236103,7 +240513,7 @@ The Hepatitis D Virus (HDV) Database, HDVdb contains comprehensive data on HDV g
     biotools:primaryContact "Darko Babic" .
 
 <https://bio.tools/he_viewer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2229,
@@ -236116,7 +240526,7 @@ The Hepatitis D Virus (HDV) Database, HDVdb contains comprehensive data on HDV g
     sc:url "http://www.shawlab.org/he_viewer/" .
 
 <https://bio.tools/hea-psp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_2814 ;
@@ -236133,7 +240543,7 @@ The Hepatitis D Virus (HDV) Database, HDVdb contains comprehensive data on HDV g
     sc:url "http://www.cs.gmu.edu/~ashehu/?q=OurTools" .
 
 <https://bio.tools/healthy-disease-boxplot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3569,
@@ -236150,7 +240560,7 @@ The Hepatitis D Virus (HDV) Database, HDVdb contains comprehensive data on HDV g
     biotools:primaryContact "Dr. Soumya Banerjee" .
 
 <https://bio.tools/heap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_2885,
@@ -236169,7 +240579,7 @@ The Hepatitis D Virus (HDV) Database, HDVdb contains comprehensive data on HDV g
     biotools:primaryContact "Kentaro Yano" .
 
 <https://bio.tools/heart-disease-detection-multi-svm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3305,
@@ -236186,7 +240596,7 @@ The Hepatitis D Virus (HDV) Database, HDVdb contains comprehensive data on HDV g
     biotools:primaryContact "Majid Farzaneh" .
 
 <https://bio.tools/heat_plus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3277,
         edam:topic_3305,
@@ -236207,7 +240617,7 @@ The Hepatitis D Virus (HDV) Database, HDVdb contains comprehensive data on HDV g
     biotools:primaryContact "Ahmad Reza Hosseinpoor" .
 
 <https://bio.tools/heat_seq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0622,
@@ -236226,7 +240636,7 @@ The Hepatitis D Virus (HDV) Database, HDVdb contains comprehensive data on HDV g
     biotools:primaryContact "Guillaume Devailly" .
 
 <https://bio.tools/heatmapper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0121,
@@ -236246,7 +240656,7 @@ The Hepatitis D Virus (HDV) Database, HDVdb contains comprehensive data on HDV g
         "Wishart Research Group" .
 
 <https://bio.tools/heatmaps> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0085,
         edam:topic_3169 ;
@@ -236265,7 +240675,7 @@ The Hepatitis D Virus (HDV) Database, HDVdb contains comprehensive data on HDV g
     biotools:primaryContact "Malcolm Perry" .
 
 <https://bio.tools/heatplus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0092 ;
@@ -236282,7 +240692,7 @@ The Hepatitis D Virus (HDV) Database, HDVdb contains comprehensive data on HDV g
     biotools:primaryContact "Alexander Ploner" .
 
 <https://bio.tools/hec> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2259,
         edam:topic_3053,
@@ -236298,8 +240708,33 @@ The Hepatitis D Virus (HDV) Database, HDVdb contains comprehensive data on HDV g
     sc:url "http://evol-constructor.bionet.nsc.ru/?cat=5&lang=en" ;
     biotools:primaryContact "Yury G. Matushkin" .
 
+<https://bio.tools/heca> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0196,
+        edam:topic_2229,
+        edam:topic_2815,
+        edam:topic_3172,
+        edam:topic_3395 ;
+    sc:citation <https://doi.org/10.1016/J.ISCI.2022.104318>,
+        "pmcid:PMC9114628",
+        "pubmed:35602947" ;
+    sc:description "The human Ensemble Cell Atlas (hECA) a database." ;
+    sc:featureList edam:operation_0310,
+        edam:operation_0314,
+        edam:operation_2422,
+        edam:operation_3802,
+        edam:operation_3891 ;
+    sc:license "Not licensed" ;
+    sc:name "hECA" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://eca.xglab.tech/" .
+
 <https://bio.tools/hecatomb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0781,
         edam:topic_3301 ;
@@ -236312,8 +240747,24 @@ The Hepatitis D Virus (HDV) Database, HDVdb contains comprehensive data on HDV g
     sc:softwareHelp <https://hecatomb.readthedocs.io/en/latest/> ;
     sc:url "https://github.com/shandley/hecatomb" .
 
+<https://bio.tools/heganlda> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0659 ;
+    sc:citation <https://doi.org/10.1109/TCBB.2021.3136886>,
+        "pubmed:34932483" ;
+    sc:description "A computational model for predicting potential lncRNA-disease associations based on multiple heterogeneous networks." ;
+    sc:featureList edam:operation_3927 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "HEGANLDA" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/HEGANLDA/HEGANLDA" .
+
 <https://bio.tools/heidi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3053,
@@ -236330,7 +240781,7 @@ The Hepatitis D Virus (HDV) Database, HDVdb contains comprehensive data on HDV g
         "Emrah Kostem" .
 
 <https://bio.tools/heinz> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -236346,7 +240797,7 @@ The Hepatitis D Virus (HDV) Database, HDVdb contains comprehensive data on HDV g
     biotools:primaryContact "Gunnar W. Klau" .
 
 <https://bio.tools/heliquest> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0130,
         edam:topic_0154,
@@ -236366,7 +240817,7 @@ The Hepatitis D Virus (HDV) Database, HDVdb contains comprehensive data on HDV g
     biotools:primaryContact "HeliQuest Support" .
 
 <https://bio.tools/helisphere> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3170,
@@ -236380,7 +240831,7 @@ The Hepatitis D Virus (HDV) Database, HDVdb contains comprehensive data on HDV g
     biotools:primaryContact "A. Kitzmiller" .
 
 <https://bio.tools/helixcorr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0820 ;
@@ -236395,7 +240846,7 @@ The Hepatitis D Virus (HDV) Database, HDVdb contains comprehensive data on HDV g
     sc:url "http://webclu.bio.wzw.tum.de/helixcorr/index.html" .
 
 <https://bio.tools/helixpso> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0082,
@@ -236411,14 +240862,12 @@ The Hepatitis D Virus (HDV) Database, HDVdb contains comprehensive data on HDV g
 
 <https://bio.tools/helixturnhelix> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2886" ;
-            sc:name "Protein sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2886" ] ;
+            sc:additionalType "http://edamontology.org/data_2886" ;
+            sc:name "Protein sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:name "Protein features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3542 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -236449,7 +240898,7 @@ The Hepatitis D Virus (HDV) Database, HDVdb contains comprehensive data on HDV g
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/helixturnhelix.html" .
 
 <https://bio.tools/helixvis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3168,
@@ -236468,7 +240917,7 @@ helixvis: Visualize alpha-helical peptide sequences in Python.""" ;
     sc:url "https://github.com/subramv/" .
 
 <https://bio.tools/hello> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_3382,
@@ -236489,7 +240938,7 @@ helixvis: Visualize alpha-helical peptide sequences in Python.""" ;
     sc:url "https://github.com/anands-repo/hello" .
 
 <https://bio.tools/helloranges> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0605 ;
@@ -236506,7 +240955,7 @@ helixvis: Visualize alpha-helical peptide sequences in Python.""" ;
     biotools:primaryContact "Michael Lawrence" .
 
 <https://bio.tools/help> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -236525,7 +240974,7 @@ helixvis: Visualize alpha-helical peptide sequences in Python.""" ;
     biotools:primaryContact "Reid F. Thompson" .
 
 <https://bio.tools/helpredictor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Database portal",
         "Web application" ;
@@ -236546,7 +240995,7 @@ helixvis: Visualize alpha-helical peptide sequences in Python.""" ;
         "Lei Yang" .
 
 <https://bio.tools/heltomo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3306,
         edam:topic_3315,
@@ -236563,7 +241012,7 @@ helixvis: Visualize alpha-helical peptide sequences in Python.""" ;
     biotools:primaryContact "Alexander Meaney" .
 
 <https://bio.tools/hem> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -236583,14 +241032,12 @@ helixvis: Visualize alpha-helical peptide sequences in Python.""" ;
 
 <https://bio.tools/hemaexplorer> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2299" ;
-            sc:name "Gene name" ;
-            sc:sameAs "http://edamontology.org/data_2299" ] ;
+            sc:additionalType "http://edamontology.org/data_2299" ;
+            sc:name "Gene name" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0862" ;
-            sc:name "Dotplot" ;
-            sc:sameAs "http://edamontology.org/data_0862" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0862" ;
+            sc:name "Dotplot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3379,
@@ -236612,7 +241059,7 @@ helixvis: Visualize alpha-helical peptide sequences in Python.""" ;
     biotools:primaryContact "Frederik Otzen Bagger" .
 
 <https://bio.tools/hemdag> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0621,
@@ -236630,7 +241077,7 @@ helixvis: Visualize alpha-helical peptide sequences in Python.""" ;
     sc:url "https://anaconda.org/bioconda/r-hemdag" .
 
 <https://bio.tools/hemi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0108,
@@ -236649,7 +241096,7 @@ helixvis: Visualize alpha-helical peptide sequences in Python.""" ;
     biotools:primaryContact "Dr. Yu Xue" .
 
 <https://bio.tools/hemnet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_2640,
@@ -236667,7 +241114,7 @@ helixvis: Visualize alpha-helical peptide sequences in Python.""" ;
         "Quan Nguyen" .
 
 <https://bio.tools/hemnma-3d> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0176,
         edam:topic_0611,
@@ -236689,7 +241136,7 @@ helixvis: Visualize alpha-helical peptide sequences in Python.""" ;
     sc:url "https://github.com/scipion-em/scipion-em-continuousflex" .
 
 <https://bio.tools/hemolytik> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_3071,
@@ -236704,11 +241151,11 @@ helixvis: Visualize alpha-helical peptide sequences in Python.""" ;
         "Mac",
         "Windows" ;
     sc:softwareHelp <http://crdd.osdd.net/raghava/hemolytik/help.php> ;
-    sc:url "http://crdd.osdd.net/raghava/hemolytik/" ;
+    sc:url "http://webs.iiitd.edu.in/raghava/hemolytik/" ;
     biotools:primaryContact "Gajendra P. S. Raghava" .
 
 <https://bio.tools/hemomips> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0632,
@@ -236731,7 +241178,7 @@ The hemoMIPs pipeline is a fast and efficient analysis pipeline for the analysis
     sc:url "https://github.com/kircherlab/hemoMIPs" .
 
 <https://bio.tools/hemonet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0749,
@@ -236750,7 +241197,7 @@ The hemoMIPs pipeline is a fast and efficient analysis pipeline for the analysis
     sc:url "https://github.com/adibayaseen/HemoNet" .
 
 <https://bio.tools/hemopi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0123 ;
@@ -236763,11 +241210,11 @@ The hemoMIPs pipeline is a fast and efficient analysis pipeline for the analysis
         "Mac",
         "Windows" ;
     sc:softwareHelp <http://crdd.osdd.net/raghava/hemopi/algo.php> ;
-    sc:url "http://crdd.osdd.net/raghava/hemopi/" ;
+    sc:url "http://webs.iiitd.edu.in/raghava/hemopi/" ;
     biotools:primaryContact "Dr. Gajendra P. S. Raghava" .
 
 <https://bio.tools/hemopimod> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0153,
@@ -236788,7 +241235,7 @@ HemoPI-MOD is an in silico method, which is developed to predict hemolytic or he
     sc:url "http://webs.iiitd.edu.in/raghava/hemopimod/" .
 
 <https://bio.tools/hep-druginteractions> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0202,
         edam:topic_0781,
@@ -236809,7 +241256,7 @@ Access our free, comprehensive and user-friendly drug interaction charts.""" ;
     sc:url "http://www.hep-druginteractions.org/" .
 
 <https://bio.tools/hepamine> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0108,
@@ -236833,7 +241280,7 @@ a liver disease microarray database, visualization platform and data-mining reso
     sc:url "http://www.hepamine.de" .
 
 <https://bio.tools/hepatotoxicity> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3373,
@@ -236853,7 +241300,7 @@ deal_with_data_dm_invivo.R plays the code for feature selection of drug_matrix."
     sc:url "https://github.com/RanSuLab/Hepatotoxicity" .
 
 <https://bio.tools/hera> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0625,
@@ -236871,8 +241318,52 @@ The H uman e nhancer R NA A tlas (HeRA) provides the expression Landscape of enh
     sc:name "HeRA" ;
     sc:url "https://hanlab.uth.edu/HeRA/" .
 
+<https://bio.tools/herbert_prater> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:description """[url=https://iplocation.io/]what is my IP address[/url]
+<a href="https://iplocation.io/">IPlocation</a>""" ;
+    sc:name "Herbert Prater" ;
+    sc:url "https://iplocation.io/" .
+
+<https://bio.tools/herbkg> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workbench" ;
+    sc:applicationSubCategory edam:topic_0089,
+        edam:topic_0218,
+        edam:topic_0634,
+        edam:topic_3053,
+        edam:topic_3388 ;
+    sc:citation <https://doi.org/10.3389/FGENE.2022.799349>,
+        "pmcid:PMC9091197",
+        "pubmed:35571049" ;
+    sc:description "HerbKG, a knowledge graph that bridges herbal and molecular medicine" ;
+    sc:featureList edam:operation_3096,
+        edam:operation_3280,
+        edam:operation_3502 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Apache-2.0" ;
+    sc:name "HerbKG" ;
+    sc:operatingSystem "Windows" ;
+    sc:url "https://github.com/FeiYee/HerbKG" .
+
+<https://bio.tools/herceptinr> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:citation <https://doi.org/10.1038/srep04483>,
+        "pmcid:PMC3967150",
+        "pubmed:24670875" ;
+    sc:description "HerceptinR is a database of assays performed to test sensitivity or resistance of Herceptin Antibodies towards breast cancer cell lines." ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "herceptinr" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/herceptinr/index.html> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/herceptinr/index.html" .
+
 <https://bio.tools/hermes> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0091 ;
     sc:citation <https://doi.org/10.1016/j.softx.2017.07.007> ;
@@ -236887,7 +241378,7 @@ The H uman e nhancer R NA A tlas (HeRA) provides the expression Landscape of enh
     biotools:primaryContact "Athanassios M. Kintsakis" .
 
 <https://bio.tools/hermes-metabolomics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3172,
@@ -236902,10 +241393,10 @@ The H uman e nhancer R NA A tlas (HeRA) provides the expression Landscape of enh
 
 <https://bio.tools/hervd> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2711" ;
-            sc:name "Genome report" ;
-            sc:sameAs "http://edamontology.org/data_2711" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2711" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Genome report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0623,
@@ -236939,8 +241430,29 @@ The H uman e nhancer R NA A tlas (HeRA) provides the expression Landscape of enh
     biotools:primaryContact "Jan Pačes",
         "Ondřej Moravčík" .
 
+<https://bio.tools/hesml> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0089,
+        edam:topic_0637,
+        edam:topic_3303,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1186/S12859-021-04539-0>,
+        "pmcid:PMC8734250",
+        "pubmed:34991460" ;
+    sc:description "HESML is an efficient, scalable and large Java software library of ontology-based semantic similarity measures and Information Content (IC) models based on WordNet, SNOMED-CT, MeSH or any other OBO-based ontology." ;
+    sc:featureList edam:operation_0306,
+        edam:operation_3432,
+        edam:operation_3435 ;
+    sc:isAccessibleForFree true ;
+    sc:license "CC-BY-NC-4.0" ;
+    sc:name "HESML" ;
+    sc:operatingSystem "Linux",
+        "Windows" ;
+    sc:url "http://hesml.lsi.uned.es/" .
+
 <https://bio.tools/heteroggm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2269,
@@ -236959,14 +241471,14 @@ Gaussian Graphical Model-Based Heterogeneity Analysis.""" ;
 
 <https://bio.tools/heteromirpred> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_2200" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1772" ;
-            sc:name "Score" ;
-            sc:sameAs "http://edamontology.org/data_1772" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1772" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Score" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3047 ;
     sc:citation <https://doi.org/10.1093/nar/gks878> ;
@@ -236981,7 +241493,7 @@ Gaussian Graphical Model-Based Heterogeneity Analysis.""" ;
     sc:url "http://ncrna-pred.com/premiRNA.html" .
 
 <https://bio.tools/heu-mchc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_3053 ;
@@ -236995,7 +241507,7 @@ Gaussian Graphical Model-Based Heterogeneity Analysis.""" ;
     sc:url "http://heu-mchc.algolab.eu/" .
 
 <https://bio.tools/heuraa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0199,
@@ -237013,18 +241525,18 @@ Gaussian Graphical Model-Based Heterogeneity Analysis.""" ;
 
 <https://bio.tools/hexpochem> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0990" ;
-            sc:name "Compound name" ;
-            sc:sameAs "http://edamontology.org/data_0990" ] ;
+            sc:additionalType "http://edamontology.org/data_0990" ;
+            sc:encodingFormat "http://edamontology.org/format_1196" ;
+            sc:name "Compound name" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0906" ;
-            sc:name "Protein interaction data" ;
-            sc:sameAs "http://edamontology.org/data_0906" ],
+            sc:additionalType "http://edamontology.org/data_1566" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Protein-ligand interaction report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1566" ;
-            sc:name "Protein-ligand interaction report" ;
-            sc:sameAs "http://edamontology.org/data_1566" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0906" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Protein interaction data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btt112>,
@@ -237043,7 +241555,7 @@ Gaussian Graphical Model-Based Heterogeneity Analysis.""" ;
     sc:url "http://cbs.dtu.dk/services/HExpoChem-1.0/" .
 
 <https://bio.tools/hexserver> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -237066,7 +241578,7 @@ Gaussian Graphical Model-Based Heterogeneity Analysis.""" ;
     biotools:primaryContact "Dave Ritchie" .
 
 <https://bio.tools/hfa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3382,
         edam:topic_3520 ;
@@ -237081,22 +241593,20 @@ Few-shot semantic segmentation remains an open problem because limited support (
 
 <https://bio.tools/hfaim> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2886" ;
-            sc:name "Protein sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2886" ] ;
+            sc:additionalType "http://edamontology.org/data_2886" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3479" ;
-            sc:name "Gene order" ;
-            sc:sameAs "http://edamontology.org/data_3479" ],
+            sc:additionalType "http://edamontology.org/data_1361" ;
+            sc:name "Position frequency matrix" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1384" ;
-            sc:name "Sequence alignment (protein)" ;
-            sc:sameAs "http://edamontology.org/data_1384" ],
+            sc:additionalType "http://edamontology.org/data_3479" ;
+            sc:name "Gene order" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1361" ;
-            sc:name "Position frequency matrix" ;
-            sc:sameAs "http://edamontology.org/data_1361" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1384" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Sequence alignment (protein)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_3510 ;
@@ -237118,7 +241628,7 @@ Few-shot semantic segmentation remains an open problem because limited support (
     biotools:primaryContact "Oren Tzfadia" .
 
 <https://bio.tools/hfbd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_3300,
         edam:topic_3335,
@@ -237135,7 +241645,7 @@ Few-shot semantic segmentation remains an open problem because limited support (
     sc:url "http://sysbio.org.cn/HFBD/" .
 
 <https://bio.tools/hfip> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0218,
         edam:topic_0634,
@@ -237152,8 +241662,29 @@ Few-shot semantic segmentation remains an open problem because limited support (
     sc:name "HFIP" ;
     sc:url "http://heartfailure.medical-bigdata.com/" .
 
+<https://bio.tools/hfoapp> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_3300,
+        edam:topic_3360,
+        edam:topic_3421 ;
+    sc:citation <https://doi.org/10.1523/ENEURO.0509-20.2021>,
+        "pmcid:PMC8503963",
+        "pubmed:34544760" ;
+    sc:description "A MATLAB-based graphic user interface for high frequency oscillations marking." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3435 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "HFOApp" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://github.com/zelanolab/hfoapp/blob/main/HFOApp_Manual.pdf> ;
+    sc:url "https://github.com/zelanolab/hfoapp.git" .
+
 <https://bio.tools/hfv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0154,
@@ -237173,7 +241704,7 @@ Few-shot semantic segmentation remains an open problem because limited support (
     biotools:primaryContact "HFV Support" .
 
 <https://bio.tools/hgc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0769,
@@ -237190,14 +241721,12 @@ The core function of HGC takes a graph G as the input. Here G is the adjacency m
 
 <https://bio.tools/hgca> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2298" ;
-            sc:name "Gene ID (HGNC)" ;
-            sc:sameAs "http://edamontology.org/data_2298" ] ;
+            sc:additionalType "http://edamontology.org/data_2298" ;
+            sc:name "Gene ID (HGNC)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3271" ;
-            sc:name "Gene tree" ;
-            sc:sameAs "http://edamontology.org/data_3271" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3271" ;
+            sc:name "Gene tree" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3308 ;
     sc:citation <https://doi.org/10.1186/1756-0500-5-265>,
@@ -237216,7 +241745,7 @@ The core function of HGC takes a graph G as the input. Here G is the adjacency m
     biotools:primaryContact <http://orcid.org/0000-0001-8991-8712> .
 
 <https://bio.tools/hgcs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0634,
@@ -237235,19 +241764,22 @@ The core function of HGC takes a graph G as the input. Here G is the adjacency m
     biotools:primaryContact "Yuval Itan" .
 
 <https://bio.tools/hgd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0621,
         edam:topic_0622,
         edam:topic_3489,
         edam:topic_3512 ;
-    sc:citation "pubmed:21071397" ;
+    sc:citation <https://doi.org/10.1093/nar/gkq1145>,
+        "pmcid:PMC3013718",
+        "pubmed:21071397" ;
     sc:description "The Hymenoptera Genome Database is a comprehensive model organism database for insect species of the order Hymenoptera. HGD contains data from 9 different species across 200 million years in the phylogeny of Hymenoptera. Curated data at HGD includes predicted and annotated gene sets supported with evidence tracks such as ESTs/cDNAs, small RNA sequences and GC composition domains." ;
     sc:featureList edam:operation_0224,
         edam:operation_2421,
         edam:operation_3208,
         edam:operation_3216 ;
+    sc:isAccessibleForFree true ;
     sc:name "The Hymenoptera Genome Database (HGD)" ;
     sc:operatingSystem "Linux",
         "Mac",
@@ -237256,7 +241788,7 @@ The core function of HGC takes a graph G as the input. Here G is the adjacency m
     biotools:primaryContact "HGD Support" .
 
 <https://bio.tools/hgdiscovery> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0130,
         edam:topic_0199,
@@ -237272,8 +241804,27 @@ The core function of HGC takes a graph G as the input. Here G is the adjacency m
     sc:url "http://biosig.unimelb.edu.au/hgdiscovery/" ;
     biotools:primaryContact "David B. Ascher" .
 
+<https://bio.tools/hgetgi> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workbench" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0602,
+        edam:topic_0634,
+        edam:topic_3169,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC148>,
+        "pubmed:35266510" ;
+    sc:description "A heterogeneous graph embedding model for predicting interactions between transcription factor and target gene." ;
+    sc:featureList edam:operation_2437,
+        edam:operation_2454,
+        edam:operation_2575 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "HGETGI" ;
+    sc:url "https://github.com/PGTSING/HGETGI" .
+
 <https://bio.tools/hgfdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
@@ -237293,8 +241844,29 @@ Helmeted guinea fowl (HGF; Numida meleagris) is vigorous, hardy, and mostly dise
     sc:name "HGFDB" ;
     sc:url "http://hgfdb.ynau.edu.cn/" .
 
+<https://bio.tools/hgga> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workbench" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_0196,
+        edam:topic_0622,
+        edam:topic_3382 ;
+    sc:citation <https://doi.org/10.1186/S12859-022-04701-2>,
+        "pmcid:PMC9077837",
+        "pubmed:35525918" ;
+    sc:description "Hierarchical Guided Genome Assembler (HGGA) a framework to guide genome assembly with additional data." ;
+    sc:featureList edam:operation_0282,
+        edam:operation_0523,
+        edam:operation_0524,
+        edam:operation_0525,
+        edam:operation_3216 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "HGGA" ;
+    sc:url "https://github.com/rikuu/hgga" .
+
 <https://bio.tools/hgimc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3336,
@@ -237315,7 +241887,7 @@ November 23, 2020 Software Open Access.""" ;
     sc:url "http://doi.org/10.5281/zenodo.4285640" .
 
 <https://bio.tools/hgmd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
@@ -237323,9 +241895,17 @@ November 23, 2020 Software Open Access.""" ;
         edam:topic_2815,
         edam:topic_3325,
         edam:topic_3366 ;
-    sc:citation <https://doi.org/10.1007/s00439-013-1358-4>,
+    sc:citation <https://doi.org/10.1002/humu.10212>,
+        <https://doi.org/10.1007/s00439-013-1358-4>,
+        <https://doi.org/10.1007/s00439-017-1779-6>,
+        <https://doi.org/10.1136/jmg.2007.055210>,
+        <https://doi.org/10.1186/gm13>,
         "pmcid:PMC3898141",
-        "pubmed:24077912" ;
+        "pubmed:12754702",
+        "pubmed:18245393",
+        "pubmed:19348700",
+        "pubmed:24077912",
+        "pubmed:28349240" ;
     sc:description "The Human Gene Mutation Database (HGMD) - comprehensive collection of germline mutations in nuclear genes that underlie, or are associated with, human inherited disease. It is a flexible resource that can be adapted to a broad range of applications including searching for an overview of known mutations associated with a particular disease, interpreting clinical test results or looking for the likely causal mutation in a list of variants." ;
     sc:featureList edam:operation_3196,
         edam:operation_3197,
@@ -237342,14 +241922,13 @@ November 23, 2020 Software Open Access.""" ;
 
 <https://bio.tools/hgnc> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2298" ;
-            sc:name "Gene ID (HGNC)" ;
-            sc:sameAs "http://edamontology.org/data_2298" ] ;
+            sc:additionalType "http://edamontology.org/data_2298" ;
+            sc:name "Gene ID (HGNC)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0916" ;
-            sc:name "Gene report" ;
-            sc:sameAs "http://edamontology.org/data_0916" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0916" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Gene report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0622,
@@ -237368,7 +241947,7 @@ November 23, 2020 Software Open Access.""" ;
     sc:url "http://www.genenames.org/" .
 
 <https://bio.tools/hgnchelper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0203,
@@ -237383,7 +241962,7 @@ Identify and Correct Invalid HGNC Human Gene Symbols and MGI Mouse Gene Symbols.
     sc:url "https://waldronlab.io/HGNChelper/" .
 
 <https://bio.tools/hgpd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0108,
@@ -237403,8 +241982,27 @@ Identify and Correct Invalid HGNC Human Gene Symbols and MGI Mouse Gene Symbols.
     sc:url "http://hgpd.lifesciencedb.jp/cgi/" ;
     biotools:primaryContact "HGPD Support" .
 
+<https://bio.tools/hgsorf> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_2269,
+        edam:topic_3303,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1016/J.COMPBIOMED.2022.105671>,
+        "pubmed:35660327" ;
+    sc:description "Henry Gas Solubility Optimization-based Random Forest for C-Section prediction and XAI-based cause analysis." ;
+    sc:featureList edam:operation_0409,
+        edam:operation_3659 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "HGSORF" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/MIrazul29/HGSORF_CSection" .
+
 <https://bio.tools/hgt-id> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_2640,
@@ -237425,7 +242023,7 @@ Identify and Correct Invalid HGNC Human Gene Symbols and MGI Mouse Gene Symbols.
     biotools:primaryContact "Krishna R. Kalari" .
 
 <https://bio.tools/hgtector> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0622,
@@ -237444,14 +242042,14 @@ Identify and Correct Invalid HGNC Human Gene Symbols and MGI Mouse Gene Symbols.
 
 <https://bio.tools/hgv_add_scores> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0199,
@@ -237476,18 +242074,18 @@ Identify and Correct Invalid HGNC Human Gene Symbols and MGI Mouse Gene Symbols.
 
 <https://bio.tools/hgv_beam> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Report" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0602,
@@ -237513,18 +242111,18 @@ Identify and Correct Invalid HGNC Human Gene Symbols and MGI Mouse Gene Symbols.
 
 <https://bio.tools/hgv_codingsnps> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0085,
         edam:topic_0199,
@@ -237549,14 +242147,14 @@ Identify and Correct Invalid HGNC Human Gene Symbols and MGI Mouse Gene Symbols.
 
 <https://bio.tools/hgv_david> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0203 ;
@@ -237578,14 +242176,14 @@ Identify and Correct Invalid HGNC Human Gene Symbols and MGI Mouse Gene Symbols.
 
 <https://bio.tools/hgv_gpass> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Report" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2269,
@@ -237609,14 +242207,14 @@ Identify and Correct Invalid HGNC Human Gene Symbols and MGI Mouse Gene Symbols.
 
 <https://bio.tools/hgv_ldtools> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0602,
@@ -237640,14 +242238,14 @@ Identify and Correct Invalid HGNC Human Gene Symbols and MGI Mouse Gene Symbols.
 
 <https://bio.tools/hgv_linktogprofile> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_1775,
@@ -237670,18 +242268,18 @@ Identify and Correct Invalid HGNC Human Gene Symbols and MGI Mouse Gene Symbols.
 
 <https://bio.tools/hgv_lps> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2269,
@@ -237704,14 +242302,14 @@ Identify and Correct Invalid HGNC Human Gene Symbols and MGI Mouse Gene Symbols.
 
 <https://bio.tools/hgv_pass> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2305" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0749,
@@ -237735,14 +242333,14 @@ Identify and Correct Invalid HGNC Human Gene Symbols and MGI Mouse Gene Symbols.
 
 <https://bio.tools/hgv_sift> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0160 ;
     sc:citation <https://doi.org/10.1093/nar/gkg509>,
@@ -237757,7 +242355,7 @@ Identify and Correct Invalid HGNC Human Gene Symbols and MGI Mouse Gene Symbols.
     biotools:primaryContact "Galaxy Support Team" .
 
 <https://bio.tools/hgvbase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0625,
@@ -237778,7 +242376,7 @@ Identify and Correct Invalid HGNC Human Gene Symbols and MGI Mouse Gene Symbols.
         "For study authors to request data updates or submit new data" .
 
 <https://bio.tools/hh-motif> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0166 ;
@@ -237801,7 +242399,7 @@ Identify and Correct Invalid HGNC Human Gene Symbols and MGI Mouse Gene Symbols.
         "Roman Prytuliak" .
 
 <https://bio.tools/hh-suite> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0160,
@@ -237825,26 +242423,8 @@ Identify and Correct Invalid HGNC Human Gene Symbols and MGI Mouse Gene Symbols.
     sc:url "https://github.com/soedinglab/hh-suite" ;
     biotools:primaryContact "Johannes Söding" .
 
-<https://bio.tools/hh8rjjh73w> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3379 ;
-    sc:citation <https://doi.org/10.1016/J.DIB.2019.104492>,
-        "pmcid:PMC6811875",
-        "pubmed:31667256" ;
-    sc:description """Loading characteristics data applied on osseointegrated implant by transfemoral bone-anchored prostheses fitted with basic components during daily activities.
-
-Inter-participant variability of loading characteristics applied on osseointegrated implant by transfemoral bone-anchored prostheses fitted with basic components during daily activities.
-
-The mean and standard deviation as well as lower and upper limits of 95% confidence interval of the spatio-temporal gait characteristics, loading boundaries and loading extremum applied on osseointegrated implant by transfemoral bone-anchored prostheses fitted with basic components during level walking. ascending and descending ramp and stairs.
-
-Published: 12 Aug 2019 : Version 1 : DOI: 10.17632/hh8rjjh73w.1.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'osseointegrated implant transfemoral amputees', 'transfemoral amputees osseointegrated', 'transfemoral bone-anchored prostheses', 'transfemoral amputees'""" ;
-    sc:featureList edam:operation_3435 ;
-    sc:name "hh8rjjh73w" ;
-    sc:url "https://data.mendeley.com/datasets/hh8rjjh73w/1" .
-
 <https://bio.tools/hhalign-kbest> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0081,
@@ -237865,7 +242445,7 @@ Published: 12 Aug 2019 : Version 1 : DOI: 10.17632/hh8rjjh73w.1.
     biotools:primaryContact "Raphael Guerois" .
 
 <https://bio.tools/hhblits> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0160 ;
@@ -237881,7 +242461,7 @@ Published: 12 Aug 2019 : Version 1 : DOI: 10.17632/hh8rjjh73w.1.
     biotools:primaryContact "Johannes Söding" .
 
 <https://bio.tools/hhcompare> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0160,
@@ -237896,7 +242476,7 @@ Published: 12 Aug 2019 : Version 1 : DOI: 10.17632/hh8rjjh73w.1.
     biotools:primaryContact "Ranko Gacesa" .
 
 <https://bio.tools/hhmd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0601,
@@ -237919,7 +242499,7 @@ Published: 12 Aug 2019 : Version 1 : DOI: 10.17632/hh8rjjh73w.1.
         "Zhang Yan" .
 
 <https://bio.tools/hhomp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0160,
@@ -237938,7 +242518,7 @@ Published: 12 Aug 2019 : Version 1 : DOI: 10.17632/hh8rjjh73w.1.
     sc:url "https://toolkit.tuebingen.mpg.de/#/tools/hhomp" .
 
 <https://bio.tools/hhpred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -237958,7 +242538,7 @@ Published: 12 Aug 2019 : Version 1 : DOI: 10.17632/hh8rjjh73w.1.
     biotools:primaryContact "Johannes Söding" .
 
 <https://bio.tools/hhrep> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0130,
         edam:topic_0157,
@@ -237980,7 +242560,7 @@ Published: 12 Aug 2019 : Version 1 : DOI: 10.17632/hh8rjjh73w.1.
     sc:url "https://toolkit.tuebingen.mpg.de/#/tools/hhpred" .
 
 <https://bio.tools/hhsenser> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -237995,8 +242575,24 @@ Published: 12 Aug 2019 : Version 1 : DOI: 10.17632/hh8rjjh73w.1.
     sc:name "HHsenser" ;
     sc:url "http://toolkit.tuebingen.mpg.de/hhsenser" .
 
+<https://bio.tools/hhsuite> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Suite" ;
+    sc:applicationSubCategory edam:topic_0078 ;
+    sc:citation <https://doi.org/10.1186/s12859-019-3019-7> ;
+    sc:description "HH-suite is a remote protein homology detection suite." ;
+    sc:featureList edam:operation_0346,
+        edam:operation_2403,
+        edam:operation_2415 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "HH-suite" ;
+    sc:softwareHelp <https://github.com/soedinglab/hh-suite/wiki> ;
+    sc:url "https://github.com/soedinglab/hh-suite" ;
+    biotools:primaryContact <https://orcid.org/0000-0001-9642-8244> .
+
 <https://bio.tools/hi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation "pubmed:19570807" ;
@@ -238009,7 +242605,7 @@ Published: 12 Aug 2019 : Version 1 : DOI: 10.17632/hh8rjjh73w.1.
     sc:url "http://www.sanger.ac.uk/" .
 
 <https://bio.tools/hi-chip-ml> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3179,
@@ -238028,7 +242624,7 @@ Published: 12 Aug 2019 : Version 1 : DOI: 10.17632/hh8rjjh73w.1.
         "Mikhail S. Gelfand" .
 
 <https://bio.tools/hi-jack> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_2229,
@@ -238047,18 +242643,18 @@ Published: 12 Aug 2019 : Version 1 : DOI: 10.17632/hh8rjjh73w.1.
 
 <https://bio.tools/hiannotator> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ] ;
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Sequence features" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ],
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Sequence features" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0160 ;
@@ -238076,7 +242672,7 @@ Published: 12 Aug 2019 : Version 1 : DOI: 10.17632/hh8rjjh73w.1.
     biotools:primaryContact "Nirav V Malani" .
 
 <https://bio.tools/hibag> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0804,
@@ -238097,7 +242693,7 @@ Published: 12 Aug 2019 : Version 1 : DOI: 10.17632/hh8rjjh73w.1.
     biotools:primaryContact <http://orcid.org/0000-0002-1390-0708> .
 
 <https://bio.tools/hic-dcplus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0769 ;
@@ -238117,7 +242713,7 @@ Software tool for Hi-C HiChIP interaction calling and differential analysis usin
     sc:url "https://bitbucket.org/leslielab/hicdcplus" .
 
 <https://bio.tools/hic-hiker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
@@ -238139,10 +242735,9 @@ This will install the python package (and its cli command) hic_hiker.""" ;
 
 <https://bio.tools/hic-pro> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:name "Sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3070 ;
     sc:author <http://orcid.org/0000-0003-1678-7410> ;
@@ -238163,8 +242758,55 @@ This will install the python package (and its cli command) hic_hiker.""" ;
     sc:url "https://github.com/nservant/HiC-Pro" ;
     biotools:primaryContact <http://orcid.org/0000-0003-1678-7410> .
 
+<https://bio.tools/hic-te> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0196,
+        edam:topic_0621,
+        edam:topic_0769,
+        edam:topic_0780,
+        edam:topic_3168 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC442>,
+        "pubmed:35781332" ;
+    sc:description "A computational pipeline for Hi-C data analysis to study the role of repeat family interactions in the genome 3D organization." ;
+    sc:featureList edam:operation_0531,
+        edam:operation_3198,
+        edam:operation_3798 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "HiC-TE" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://gitlab.fi.muni.cz/lexa/hic-te/" .
+
+<https://bio.tools/hic1dmetrics> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0621,
+        edam:topic_0654,
+        edam:topic_3169,
+        edam:topic_3173,
+        edam:topic_3940 ;
+    sc:citation <https://doi.org/10.1093/BIB/BBAB509>,
+        "pmcid:PMC8769930",
+        "pubmed:34850813" ;
+    sc:description "Framework to extract various one-dimensional features from chromosome structure data." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3799,
+        edam:operation_3891 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "HiC1Dmetrics" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://h1d.readthedocs.io/> ;
+    sc:url "http://hic1d.herokuapp.com" .
+
 <https://bio.tools/hicGAN> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0218,
         edam:topic_0602,
@@ -238178,7 +242820,7 @@ This will install the python package (and its cli command) hic_hiker.""" ;
     sc:url "https://github.com/kimmo1019/hicGAN" .
 
 <https://bio.tools/hicanu> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
@@ -238202,7 +242844,7 @@ Detect overlaps in high-noise sequences using MHAP.""" ;
     sc:url "https://github.com/marbl/canu" .
 
 <https://bio.tools/hicaptools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0622,
@@ -238216,8 +242858,33 @@ Detect overlaps in high-noise sequences using MHAP.""" ;
     sc:url "https://github.com/sahlenlab/HiCapTools" ;
     biotools:primaryContact "Pelin Sahlén" .
 
+<https://bio.tools/hicarn> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Workbench",
+        "Workflow" ;
+    sc:applicationSubCategory edam:topic_0621,
+        edam:topic_0654,
+        edam:topic_3382,
+        edam:topic_3474,
+        edam:topic_3940 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC156>,
+        "pmcid:PMC9048669",
+        "pubmed:35274679" ;
+    sc:description "HiCARN: Resolution Enhancement of Hi-C Data Using Cascading Residual Networks" ;
+    sc:featureList edam:operation_0272,
+        edam:operation_0303,
+        edam:operation_3927 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "HiCARN" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/OluwadareLab/HiCARN" .
+
 <https://bio.tools/hicat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0097,
@@ -238236,7 +242903,7 @@ Detect overlaps in high-noise sequences using MHAP.""" ;
     biotools:primaryContact "Dr. Célia Baroux" .
 
 <https://bio.tools/hicbin> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0621,
@@ -238254,7 +242921,7 @@ Detect overlaps in high-noise sequences using MHAP.""" ;
     biotools:primaryContact <https://orcid.org/0000-0002-8552-043X> .
 
 <https://bio.tools/hiccompare> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:citation <https://doi.org/10.1101/147850> ;
@@ -238271,7 +242938,7 @@ Detect overlaps in high-noise sequences using MHAP.""" ;
     biotools:primaryContact "John Stansfield" .
 
 <https://bio.tools/hicenterprise> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0204,
@@ -238297,7 +242964,7 @@ HiCEnterprise is a software tool for identification of long-range chromatin cont
     biotools:primaryContact <https://orcid.org/0000-0002-8134-0589> .
 
 <https://bio.tools/hicexplorer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_0769,
@@ -238323,7 +242990,7 @@ Free document hosting provided by Read the Docs.""" ;
     sc:url "https://hicexplorer.usegalaxy.eu" .
 
 <https://bio.tools/hichap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_2885,
@@ -238345,22 +243012,21 @@ HiCHap is a Python package designed to process and analyze Hi-C data, primarily
 
 <https://bio.tools/hichipper> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ] ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:encodingFormat "http://edamontology.org/format_3750" ;
+            sc:name "Nucleic acid sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ],
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Image" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0889" ;
-            sc:name "Structural profile" ;
-            sc:sameAs "http://edamontology.org/data_0889" ],
+            sc:additionalType "http://edamontology.org/data_0889" ;
+            sc:name "Structural profile" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0607,
@@ -238379,8 +243045,29 @@ HiCHap is a Python package designed to process and analyze Hi-C data, primarily
     sc:url "http://aryee.mgh.harvard.edu/hichipper/" ;
     biotools:primaryContact "Caleb Lareau" .
 
+<https://bio.tools/hicimpute> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0654,
+        edam:topic_2229,
+        edam:topic_3940 ;
+    sc:citation <https://doi.org/10.1371/JOURNAL.PCBI.1010129>,
+        "pmcid:PMC9232133",
+        "pubmed:35696429" ;
+    sc:description "A Bayesian hierarchical model for identifying structural zeros and enhancing single cell Hi-C data." ;
+    sc:featureList edam:operation_3432,
+        edam:operation_3435,
+        edam:operation_3557 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "HiCImpute" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/sl-lin/HiCImpute" .
+
 <https://bio.tools/hicnorm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/bts570> ;
@@ -238393,7 +243080,7 @@ HiCHap is a Python package designed to process and analyze Hi-C data, primarily
     sc:url "http://www.people.fas.harvard.edu/~junliu/HiCNorm/" .
 
 <https://bio.tools/hicplotter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0622,
@@ -238410,7 +243097,7 @@ HiCHap is a Python package designed to process and analyze Hi-C data, primarily
     biotools:primaryContact "Kadir Akdemir" .
 
 <https://bio.tools/hicrep> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:citation <https://doi.org/10.1101/gr.220640.117> ;
@@ -238428,7 +243115,7 @@ HiCHap is a Python package designed to process and analyze Hi-C data, primarily
     biotools:primaryContact "Tao Yang" .
 
 <https://bio.tools/hicrep-py> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0621,
@@ -238445,7 +243132,7 @@ This repository is temporarily located at https://github.com/dejunlin/hicrep."""
     sc:url "https://github.com/Noble-Lab/hicrep" .
 
 <https://bio.tools/hicres> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0769,
@@ -238465,7 +243152,7 @@ The purpose of this container is to estimate the resolution of your HiC library
     sc:url "http://github.com/ClaireMarchal/HiCRes" .
 
 <https://bio.tools/hicsr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3382,
@@ -238484,15 +243171,18 @@ HiCSR is a Hi-C super-resolution framework written in python capable of producin
     sc:url "https://github.com/PSI-Lab/HiCSR" .
 
 <https://bio.tools/hicstuff> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0621,
         edam:topic_0654,
         edam:topic_0769,
         edam:topic_3382 ;
+    sc:author <https://orcid.org/0000-0002-1126-1535>,
+        "Amaury Bignaud" ;
     sc:citation <https://doi.org/10.1007/978-1-0716-1390-0_1>,
         "pubmed:34415528" ;
+    sc:contributor <https://orcid.org/0000-0003-3523-2453> ;
     sc:description "A lightweight library that generates and handles Hi-C contact maps in either cooler-compatible 2Dbedgraph or instaGRAAL format." ;
     sc:featureList edam:operation_2429,
         edam:operation_3435,
@@ -238504,10 +243194,11 @@ HiCSR is a Hi-C super-resolution framework written in python capable of producin
         "Mac",
         "Windows" ;
     sc:softwareHelp <https://hicstuff.readthedocs.io/en/latest/#> ;
-    sc:url "https://github.com/koszullab/hicstuff" .
+    sc:url "https://github.com/koszullab/hicstuff" ;
+    biotools:primaryContact <https://orcid.org/0000-0002-3086-1173> .
 
 <https://bio.tools/hicup> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3173 ;
     sc:citation <https://doi.org/10.12688/f1000research.7334.1> ;
@@ -238522,7 +243213,7 @@ HiCSR is a Hi-C super-resolution framework written in python capable of producin
     biotools:primaryContact "Steven Wingett" .
 
 <https://bio.tools/hiczin> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
@@ -238542,7 +243233,7 @@ HiCSR is a Hi-C super-resolution framework written in python capable of producin
     biotools:primaryContact "Fengzhu Sun" .
 
 <https://bio.tools/hiddenvis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3390,
         edam:topic_3474 ;
@@ -238555,7 +243246,7 @@ Time-series hidden state visualization toolkit based on JavaScript, Python and E
     sc:url "https://github.com/jyan97/HiddenVis" .
 
 <https://bio.tools/hide> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3053,
         edam:topic_3056,
@@ -238572,7 +243263,7 @@ Time-series hidden state visualization toolkit based on JavaScript, Python and E
         "Mukul Bansal" .
 
 <https://bio.tools/hidef> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_2259,
@@ -238593,7 +243284,7 @@ HiDeF is an analysis framework to robustly resolve the hierarchical structures o
     sc:url "https://github.com/fanzheng10/HiDeF" .
 
 <https://bio.tools/hieranoid> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Database portal" ;
     sc:applicationSubCategory edam:topic_0797,
@@ -238616,7 +243307,7 @@ HiDeF is an analysis framework to robustly resolve the hierarchical structures o
     biotools:primaryContact "Mateusz Kaduk" .
 
 <https://bio.tools/hierarchical-kalman-filter-clinical-time-series-prediction> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344 ;
@@ -238632,7 +243323,7 @@ HiDeF is an analysis framework to robustly resolve the hierarchical structures o
     biotools:primaryContact "Shuang Wang" .
 
 <https://bio.tools/hierarchical_feature_engineering> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3474,
         edam:topic_3697 ;
@@ -238650,7 +243341,7 @@ HiDeF is an analysis framework to robustly resolve the hierarchical structures o
     biotools:primaryContact "Andreas Henschel" .
 
 <https://bio.tools/hierarchicell> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0108,
@@ -238670,7 +243361,7 @@ HiDeF is an analysis framework to robustly resolve the hierarchical structures o
         "Carl D. Langefeld" .
 
 <https://bio.tools/hierarchy_web_services> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:description "REST Web service to get parents, children or siblings of an ontology term from a BioPortal ontology." ;
@@ -238684,7 +243375,7 @@ HiDeF is an analysis framework to robustly resolve the hierarchical structures o
     sc:url "http://data.bioontology.org/documentation" .
 
 <https://bio.tools/hiercc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0196,
@@ -238707,7 +243398,7 @@ HierCC is a multi-level clustering scheme for population assignments based on co
     sc:url "http://enterobase.warwick.ac.uk/" .
 
 <https://bio.tools/hierfit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0605,
         edam:topic_2229,
@@ -238728,7 +243419,7 @@ This release is a working version of HieRFIT with full functionalities.""" ;
     sc:url "https://github.com/yasinkaymaz/HieRFIT/releases/tag/v1.0.0" .
 
 <https://bio.tools/hiergwas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0199,
@@ -238747,7 +243438,7 @@ This release is a working version of HieRFIT with full functionalities.""" ;
     biotools:primaryContact "Laura Buzdugan" .
 
 <https://bio.tools/hifi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0654,
@@ -238769,7 +243460,7 @@ HIFI is a set of tools to infer true intra-chromosomal interaction frequencies a
     sc:url "https://github.com/BlanchetteLab/HIFI" .
 
 <https://bio.tools/hifi-se> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0621,
@@ -238791,8 +243482,52 @@ The BGISEQ-500 platform has launched a new test sequencing kits capable of singl
     sc:name "HIFI-SE" ;
     sc:url "https://pypi.org/project/HIFI-SE/" .
 
+<https://bio.tools/hifiadapterfilt> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:citation <https://doi.org/10.1186/s12864-022-08375-1>,
+        "pmcid:PMC8864876",
+        "pubmed:35193521" ;
+    sc:description "Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz)." ;
+    sc:name "HiFiAdapterFilt" ;
+    sc:softwareVersion "2.0.0" ;
+    sc:url "https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-022-08375-1" .
+
+<https://bio.tools/hifiasm> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0196 ;
+    sc:citation <https://doi.org/10.1038/s41592-020-01056-5> ;
+    sc:description "Hifiasm: a haplotype-resolved assembler for accurate Hifi reads" ;
+    sc:featureList edam:operation_0524,
+        edam:operation_0525 ;
+    sc:license "MIT" ;
+    sc:name "Hifiasm" ;
+    sc:softwareHelp <https://hifiasm.readthedocs.io/en/latest/> ;
+    sc:softwareVersion "0.16.1" ;
+    sc:url "https://github.com/chhylp123/hifiasm" .
+
+<https://bio.tools/hifine> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0196,
+        edam:topic_0769,
+        edam:topic_3174 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC295>,
+        "pubmed:35482530" ;
+    sc:description "Integrating Hi-c-based and shotgun-based methods to reFine binning of metagenomic contigs." ;
+    sc:featureList edam:operation_0310,
+        edam:operation_3731,
+        edam:operation_3798 ;
+    sc:isAccessibleForFree true ;
+    sc:license "AGPL-3.0" ;
+    sc:name "HiFine" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/dyxstat/HiFine" .
+
 <https://bio.tools/hifix> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/bts098> ;
@@ -238807,7 +243542,7 @@ The BGISEQ-500 platform has launched a new test sequencing kits capable of singl
     sc:url "http://lbbe.univ-lyon1.fr/-HiFiX-.html" .
 
 <https://bio.tools/hifu-beam> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Suite" ;
     sc:applicationSubCategory edam:topic_3374,
@@ -238823,7 +243558,7 @@ The BGISEQ-500 platform has launched a new test sequencing kits capable of singl
     biotools:primaryContact <https://orcid.org/0000-0002-2585-8228> .
 
 <https://bio.tools/hig2vec> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0128,
@@ -238845,7 +243580,7 @@ Simply clone this repository via.""" ;
     sc:url "https://github.com/JaesikKim/HiG2Vec" .
 
 <https://bio.tools/higdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0781,
         edam:topic_3301 ;
@@ -238864,7 +243599,7 @@ Simply clone this repository via.""" ;
         "Dr. K. Sekar" .
 
 <https://bio.tools/high-intensity-focused-ultrasound-simulator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3315,
@@ -238882,7 +243617,7 @@ Simply clone this repository via.""" ;
     biotools:primaryContact "Josh Soneson" .
 
 <https://bio.tools/highaltitudeomicsdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0203,
@@ -238900,7 +243635,7 @@ Around 140 million people live in High Altitude (HA) conditions and even a large
     sc:url "http://www.altitudeomicsdb.in" .
 
 <https://bio.tools/highmap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0102,
@@ -238919,7 +243654,7 @@ Around 140 million people live in High Altitude (HA) conditions and even a large
         "Support" .
 
 <https://bio.tools/higwas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0634,
@@ -238944,7 +243679,7 @@ The HiGWAS package is developed to identify significant SNPs that control phenot
     sc:url "https://github.com/wzhy2000/higwas" .
 
 <https://bio.tools/hihmm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0097,
@@ -238961,7 +243696,7 @@ The HiGWAS package is developed to identify significant SNPs that control phenot
     sc:url "https://sites.google.com/site/kasohn/software" .
 
 <https://bio.tools/hiite> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0622,
@@ -238980,14 +243715,14 @@ The HiGWAS package is developed to identify significant SNPs that control phenot
 
 <https://bio.tools/hilbertcurve> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1017" ;
-            sc:name "Sequence range" ;
-            sc:sameAs "http://edamontology.org/data_1017" ] ;
+            sc:additionalType "http://edamontology.org/data_1017" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Sequence range" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1279" ;
-            sc:name "Sequence map" ;
-            sc:sameAs "http://edamontology.org/data_1279" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1279" ;
+            sc:encodingFormat "http://edamontology.org/format_2060" ;
+            sc:name "Sequence map" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0092 ;
@@ -239007,7 +243742,7 @@ The HiGWAS package is developed to identify significant SNPs that control phenot
     biotools:primaryContact <http://orcid.org/0000-0002-7395-8709> .
 
 <https://bio.tools/hilbertvis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -239025,7 +243760,7 @@ The HiGWAS package is developed to identify significant SNPs that control phenot
     biotools:primaryContact "Simon Anders" .
 
 <https://bio.tools/hilbertvisgui> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0092 ;
@@ -239042,8 +243777,33 @@ The HiGWAS package is developed to identify significant SNPs that control phenot
     sc:url "http://bioconductor.org/packages/release/bioc/html/HilbertVisGUI.html" ;
     biotools:primaryContact "Simon Anders" .
 
+<https://bio.tools/hiloop> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0602,
+        edam:topic_0659,
+        edam:topic_0749,
+        edam:topic_2229,
+        edam:topic_3315 ;
+    sc:citation <https://doi.org/10.1186/S12859-021-04405-Z>,
+        "pmcid:PMC8489061",
+        "pubmed:34607562" ;
+    sc:description "Identification, visualization, statistical analysis and mathematical modeling of high-feedback loops in gene regulatory networks." ;
+    sc:featureList edam:operation_1781,
+        edam:operation_2426,
+        edam:operation_3799,
+        edam:operation_3891,
+        edam:operation_3925 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "HiLoop" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/BenNordick/HiLoop" .
+
 <https://bio.tools/hingeprot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_2275,
@@ -239061,7 +243821,7 @@ The HiGWAS package is developed to identify significant SNPs that control phenot
     biotools:primaryContact "Polymer Research Center" .
 
 <https://bio.tools/hint> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0749,
@@ -239078,7 +243838,7 @@ The HiGWAS package is developed to identify significant SNPs that control phenot
     biotools:primaryContact "Haiyuan Yu" .
 
 <https://bio.tools/hipathdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0219,
         edam:topic_0602,
@@ -239099,7 +243859,7 @@ The HiGWAS package is developed to identify significant SNPs that control phenot
     biotools:primaryContact "hiPathDB Support" .
 
 <https://bio.tools/hipathia> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0203,
@@ -239121,7 +243881,7 @@ The HiGWAS package is developed to identify significant SNPs that control phenot
     biotools:primaryContact "Marta R. Hidalgo" .
 
 <https://bio.tools/hipathia-gemomics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0203,
@@ -239141,7 +243901,7 @@ The sustained generation of genomic data in the last decade has increased the kn
     sc:url "http://hipathia.babelomics.org" .
 
 <https://bio.tools/hiphop> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0625,
@@ -239161,7 +243921,7 @@ The sustained generation of genomic data in the last decade has increased the kn
         <https://orcid.org/0000-0002-8531-3350> .
 
 <https://bio.tools/hipipe> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0622 ;
     sc:citation <https://doi.org/10.1109/ISCAS.1991.176345> ;
@@ -239176,8 +243936,25 @@ The sustained generation of genomic data in the last decade has increased the kn
     sc:url "http://hipipe.ncgm.sinica.edu.tw/" ;
     biotools:primaryContact "Support" .
 
+<https://bio.tools/hiplot> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application",
+        "Web service" ;
+    sc:applicationSubCategory edam:topic_0092 ;
+    sc:citation <https://doi.org/10.1093/bib/bbac261>,
+        "pubmed:35788820" ;
+    sc:description "Hiplot (https://hiplot.org) provides concise and top-quality data visualization applications for the life sciences and biomedical fields. This web service permits users to conveniently and interactively complete a few specialized visualization tasks that previously could only be conducted by senior bioinformatics or biostatistics researchers. It covers most of the daily demands of biomedical researchers with its equipped 240+ biomedical data visualization functions, involving basic statistics, multi-omics, regression, clustering, dimensional reduction, meta-analysis, survival analysis, risk modelling, etc." ;
+    sc:isAccessibleForFree true ;
+    sc:license "Other" ;
+    sc:name "Hiplot" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://hiplot.org/docs/> ;
+    sc:url "https://hiplot.org" .
+
 <https://bio.tools/hipmcl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0602 ;
@@ -239191,7 +243968,7 @@ The sustained generation of genomic data in the last decade has increased the kn
     sc:url "https://bitbucket.org/azadcse/hipmcl/wiki/Home" .
 
 <https://bio.tools/hippie> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0602,
@@ -239208,19 +243985,8 @@ The sustained generation of genomic data in the last decade has increased the kn
     sc:url "http://wanglab.pcbi.upenn.edu/hippie/" ;
     biotools:primaryContact "Wang Lab" .
 
-<https://bio.tools/hippotherapy> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3318,
-        edam:topic_3360,
-        edam:topic_3855 ;
-    sc:citation <https://doi.org/10.1080/09638288.2019.1653997>,
-        "pubmed:31491353" ;
-    sc:description "> LOW CONFIDENCE! | > HOMEPAGE MISSING! | > CORRECT NAME OF TOOL COULD ALSO BE 'hippotherapy Proponents hippotherapy' | a systematic mapping review of peer-reviewed research, 1980 to 2018 | Purpose: Comprehensively and systematically map peer-reviewed studies of hippotherapy published over 30 years, from 1980 through 2018, from the perspective of a phased scientific approach to developing complex interventions as a guide to future research and practice. Methods: A systematic mapping review of research of hippotherapy was conducted. Searches of nine databases produced 3,528 unique records; 78 full-text, English-written studies were reviewed, the earliest of which was published in 1998. Data relevant to study aims were extracted electronically from these studies and analyzed using queries and pivot tables. Results: Children with cerebral palsy and physical therapists were most prevalent as participants and providers. Equine movement was hippotherapy's core component and mechanism" ;
-    sc:featureList edam:operation_3501 ;
-    sc:name "hippotherapy" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31491353" .
-
 <https://bio.tools/hippounit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3068,
@@ -239247,7 +244013,7 @@ git clone https://github.com/KaliLab/hippounit.git.""" ;
     sc:url "https://github.com/KaliLab/hippounit" .
 
 <https://bio.tools/hipsec> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1371/journal.pone.0045869> ;
@@ -239262,22 +244028,22 @@ git clone https://github.com/KaliLab/hippounit.git.""" ;
 
 <https://bio.tools/hipstr> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ],
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2914" ;
-            sc:name "Sequence features metadata" ;
-            sc:sameAs "http://edamontology.org/data_2914" ],
+            sc:additionalType "http://edamontology.org/data_2914" ;
+            sc:encodingFormat "http://edamontology.org/format_3003" ;
+            sc:name "Sequence features metadata" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence variations" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0157,
         edam:topic_0622,
@@ -239294,7 +244060,7 @@ git clone https://github.com/KaliLab/hippounit.git.""" ;
     sc:url "https://hipstr-tool.github.io/HipSTR/" .
 
 <https://bio.tools/hireadsprocessor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3071,
@@ -239314,7 +244080,7 @@ git clone https://github.com/KaliLab/hippounit.git.""" ;
     biotools:primaryContact "Nirav V Malani" .
 
 <https://bio.tools/hirise> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0102,
@@ -239334,7 +244100,7 @@ git clone https://github.com/KaliLab/hippounit.git.""" ;
     biotools:primaryContact "Dovetail Genomics" .
 
 <https://bio.tools/hisat2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3170 ;
     sc:citation <https://doi.org/10.1038/nmeth.3317>,
@@ -239357,7 +244123,7 @@ git clone https://github.com/KaliLab/hippounit.git.""" ;
     sc:url "https://ccb.jhu.edu/software/hisat2/index.shtml" .
 
 <https://bio.tools/hiscf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0602,
@@ -239374,7 +244140,7 @@ MOTIVATION:Clustering analysis in a biological network is to group biological en
     sc:url "https://github.com/allenv5/HiSCF" .
 
 <https://bio.tools/hiscom-mimi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3170 ;
     sc:citation <https://doi.org/10.1186/s12859-018-2070-0> ;
@@ -239385,7 +244151,7 @@ MOTIVATION:Clustering analysis in a biological network is to group biological en
     biotools:primaryContact "Sungyoung Lee" .
 
 <https://bio.tools/hisea> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1186/s12859-017-1953-9> ;
@@ -239399,7 +244165,7 @@ MOTIVATION:Clustering analysis in a biological network is to group biological en
     biotools:primaryContact "Lucian Ilie" .
 
 <https://bio.tools/hisif> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2640,
@@ -239421,7 +244187,7 @@ HiSIF was implemented by using C++/C with parallel processing being written in C
     sc:url "https://github.com/yufanzhouonline/HiSIF" .
 
 <https://bio.tools/hisnapi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0128,
@@ -239443,7 +244209,7 @@ Protein and nucleic acid interactions play a vital role in many biological proce
     sc:url "http://chemyang.ccnu.edu.cn/ccb/server/HISNAPI/" .
 
 <https://bio.tools/hisphossite> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0601,
@@ -239462,7 +244228,7 @@ Protein and nucleic acid interactions play a vital role in many biological proce
         "Xuejiang Guo" .
 
 <https://bio.tools/histo-cloud> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Plug-in" ;
     sc:applicationSubCategory edam:topic_0634,
@@ -239483,14 +244249,14 @@ Protein and nucleic acid interactions play a vital role in many biological proce
 
 <https://bio.tools/histocat> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3424" ;
-            sc:name "Raw image" ;
-            sc:sameAs "http://edamontology.org/data_3424" ] ;
+            sc:additionalType "http://edamontology.org/data_3424" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Raw image" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2032" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2229,
@@ -239508,7 +244274,7 @@ Protein and nucleic acid interactions play a vital role in many biological proce
     sc:url "http://www.bodenmillerlab.org/research-2/histoCAT/" .
 
 <https://bio.tools/histoclean> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0634,
@@ -239529,7 +244295,7 @@ Protein and nucleic acid interactions play a vital role in many biological proce
     sc:url "https://github.com/HistoCleanQUB/HistoClean" .
 
 <https://bio.tools/histome> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0601,
         edam:topic_0634,
@@ -239552,7 +244318,7 @@ Protein and nucleic acid interactions play a vital role in many biological proce
     biotools:primaryContact "Sanjay Gupta" .
 
 <https://bio.tools/histomicstk> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3337,
@@ -239572,14 +244338,14 @@ Protein and nucleic acid interactions play a vital role in many biological proce
 
 <https://bio.tools/histone_coder> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0857" ;
-            sc:name "Sequence search results" ;
-            sc:sameAs "http://edamontology.org/data_0857" ] ;
+            sc:additionalType "http://edamontology.org/data_0857" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Sequence search results" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Protein features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0601,
         edam:topic_3295,
@@ -239600,7 +244366,7 @@ Protein and nucleic acid interactions play a vital role in many biological proce
     biotools:primaryContact "Simone Sidoli" .
 
 <https://bio.tools/histone_tails> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0122,
@@ -239621,7 +244387,7 @@ Protein and nucleic acid interactions play a vital role in many biological proce
     biotools:primaryContact "Support" .
 
 <https://bio.tools/histonehmm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3053,
         edam:topic_3169,
@@ -239642,7 +244408,7 @@ Protein and nucleic acid interactions play a vital role in many biological proce
     biotools:primaryContact "Matthias Heinig" .
 
 <https://bio.tools/historian> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_3056,
@@ -239659,7 +244425,7 @@ Protein and nucleic acid interactions play a vital role in many biological proce
     biotools:primaryContact "Ian H. Holmes" .
 
 <https://bio.tools/histrader> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0601,
         edam:topic_0749,
@@ -239680,7 +244446,7 @@ USAGE: perl HISTRADER.pl --bedGraph ChIP.bedGraph --peaks ChIP.bed.""" ;
     sc:url "https://github.com/SvenBaileyLab/Histrader" .
 
 <https://bio.tools/hit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0140,
@@ -239702,7 +244468,7 @@ USAGE: perl HISTRADER.pl --bedGraph ChIP.bedGraph --peaks ChIP.bed.""" ;
     biotools:primaryContact "Zhiwei Cao" .
 
 <https://bio.tools/hitac> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0780,
@@ -239716,7 +244482,7 @@ Abstract Motivation Fungi are key elements in several important ecological funct
     sc:url "https://gitlab.com/dacs-hpi/hitac" .
 
 <https://bio.tools/hitc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0077,
@@ -239739,7 +244505,7 @@ Abstract Motivation Fungi are key elements in several important ecological funct
     biotools:primaryContact <http://orcid.org/0000-0003-1678-7410> .
 
 <https://bio.tools/hitea> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_2885,
@@ -239760,7 +244526,7 @@ HiTea (Hi-C based Transposable Element Analyzer) is geared to idenify non-refere
     sc:url "https://github.com/parklab/HiTea" .
 
 <https://bio.tools/hitec> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3168,
@@ -239778,7 +244544,7 @@ HiTea (Hi-C based Transposable Element Analyzer) is geared to idenify non-refere
     biotools:primaryContact "Lucian Ilie" .
 
 <https://bio.tools/hitpredict> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0128,
@@ -239800,7 +244566,7 @@ HiTea (Hi-C based Transposable Element Analyzer) is geared to idenify non-refere
     biotools:primaryContact "HitPredict Support" .
 
 <https://bio.tools/hitrace-web> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0099,
@@ -239824,7 +244590,7 @@ HiTea (Hi-C based Transposable Element Analyzer) is geared to idenify non-refere
         "Sungroh Yoon (PI)" .
 
 <https://bio.tools/hitselect> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0085,
         edam:topic_0602,
@@ -239843,7 +244609,7 @@ HiTea (Hi-C based Transposable Element Analyzer) is geared to idenify non-refere
     biotools:primaryContact "Aaron Diaz" .
 
 <https://bio.tools/hitwalker2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0634,
@@ -239859,8 +244625,21 @@ HiTea (Hi-C based Transposable Element Analyzer) is geared to idenify non-refere
     sc:softwareHelp <https://github.com/biodev/HitWalker2/wiki> ;
     sc:url "https://github.com/biodev/HitWalker2" .
 
+<https://bio.tools/hivbio> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:description "The HIVbio is the home page of various informations that are provided here for Human Immunodefeciency Virus (HIV) life cycle and Infection." ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "hivbio" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/hivbio/index.html> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/hivbio/index.html" .
+
 <https://bio.tools/hivcleave> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0781,
@@ -239876,8 +244655,24 @@ HiTea (Hi-C based Transposable Element Analyzer) is geared to idenify non-refere
     sc:url "http://www.csbio.sjtu.edu.cn/bioinf/HIV/" ;
     biotools:primaryContact "Hong-Bin" .
 
+<https://bio.tools/hivcopred> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:citation <https://doi.org/10.1371/journal.pone.0061437>,
+        "pmcid:PMC3626595",
+        "pubmed:23596523" ;
+    sc:description "HIVcoPRED: is a web server developed for predicting the coreceptor usage by HIV-1. It takes amino acid sequences of Variable loop (V3) of gp120 protein of HIV and predicts the coreceptor used by the HIV strain." ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "hivcopred" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/hivcopred/index.html> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/hivcopred/index.html" .
+
 <https://bio.tools/hive> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3168,
@@ -239896,7 +244691,7 @@ HiTea (Hi-C based Transposable Element Analyzer) is geared to idenify non-refere
     biotools:primaryContact "Contact form" .
 
 <https://bio.tools/hive_panel_explorer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3168,
@@ -239916,7 +244711,7 @@ Hive Panel Explorer is a Python script that takes a network and creates a static
     sc:url "https://github.com/hallamlab/HivePanelExplorer" .
 
 <https://bio.tools/hivid2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_0769,
@@ -239934,7 +244729,7 @@ After obtaining the integration sites, HIVID2 allows the user to decide whether
     sc:url "https://github.com/zengxi-hada/HIVID2/" .
 
 <https://bio.tools/hiview> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0622,
@@ -239950,8 +244745,21 @@ After obtaining the integration sites, HIVID2 allows the user to decide whether
     sc:url "http://www.unc.edu/~yunmli/HiView/" ;
     biotools:primaryContact "Li Group" .
 
+<https://bio.tools/hivint> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:description "The Human Immunodeficiency Virus is a retrovirus and has a genome size of about 9.5 Kb with repertoire of only 15-20 proteins." ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "hivint" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/hivint/index.html> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/hivint/index.html" .
+
 <https://bio.tools/hivintact> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0199,
@@ -239972,7 +244780,7 @@ After obtaining the integration sites, HIVID2 allows the user to decide whether
     sc:url "https://github.com/ramics/HIVIntact" .
 
 <https://bio.tools/hivproti> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0821,
@@ -239990,7 +244798,7 @@ After obtaining the integration sites, HIVID2 allows the user to decide whether
     biotools:primaryContact "Dr. Manoj Kumar" .
 
 <https://bio.tools/hla-arena> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0769,
@@ -240007,7 +244815,7 @@ A customizable environment for the structural modeling and analysis of peptide-H
     sc:url "https://github.com/KavrakiLab/hla-arena" .
 
 <https://bio.tools/hla-emma> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0199,
@@ -240026,8 +244834,26 @@ HLA-EMMA is a software package designed to perform HLA class I and class II comp
     sc:name "HLA-EMMA" ;
     sc:url "http://www.HLA-EMMA.com" .
 
+<https://bio.tools/hla-epi> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0625,
+        edam:topic_0804,
+        edam:topic_3421 ;
+    sc:citation <https://doi.org/10.1111/TAN.14505>,
+        "pubmed:34862850" ;
+    sc:description "A new EPIsode in exploring donor/recipient epitopic compatibilities." ;
+    sc:featureList edam:operation_0416,
+        edam:operation_3196 ;
+    sc:isAccessibleForFree true ;
+    sc:name "HLA-Epi" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://hla.univ-nantes.fr" .
+
 <https://bio.tools/hla-net> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0625,
@@ -240045,7 +244871,7 @@ These programs expect plain text files in UNIFORMAT v3 as input. A download link
     sc:url "https://hla-net.eu/tools/" .
 
 <https://bio.tools/hla-spread> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_0769,
@@ -240061,8 +244887,32 @@ HLA Web Resource for SNPs, Populations, Resources, ADRs, Diseases.""" ;
     sc:name "HLA-SPREAD" ;
     sc:url "http://hla-spread.igib.res.in/" .
 
+<https://bio.tools/hla3d> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workflow" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0199,
+        edam:topic_2830,
+        edam:topic_3421,
+        edam:topic_3930 ;
+    sc:citation <https://doi.org/10.1093/BIB/BBAC076>,
+        "pmcid:PMC9116210",
+        "pubmed:35289353" ;
+    sc:description "An integrated structure-based computational toolkit for immunotherapy." ;
+    sc:featureList edam:operation_0252,
+        edam:operation_0416,
+        edam:operation_0478,
+        edam:operation_0479 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "HLA3D" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://www.hla3d.cn/" .
+
 <https://bio.tools/hla_bind> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -240083,13 +244933,51 @@ HLA Web Resource for SNPs, Populations, Resources, ADRs, Diseases.""" ;
     sc:url "http://www-bimas.cit.nih.gov/molbio/hla_bind/" ;
     biotools:primaryContact "Kenneth Parker" .
 
-<https://bio.tools/hla_typing> a sc:SoftwareApplication ;
-    sc:description "CD Genomics provides accurate and reliable HLA typing service based on next-generation sequencing (NGS) technology that generates unambiguous, phase-resolved HLA sequencing results in a single assay. The service is offered for R&D / non-diagnostic purposes only and results must not be utilized to inform patient management decisions. With our advanced sequencing platforms and years of industry experience, we guarantee you high-resolution data and comprehensive bioinformatics analysis. If you have additional requirements or questions, do not hesitate to contact us." ;
-    sc:name "HLA Typing" ;
-    sc:url "https://www.cd-genomics.com/HLA-Typing.html" .
+<https://bio.tools/hladr4pred> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:citation <https://doi.org/10.1093/bioinformatics/btg424>,
+        "pubmed:14960470" ;
+    sc:description "TheHLA-DR4Pred is an SVM and ANN based HLA-DRB1*0401(MHC class II alleles) binding peptides prediction method. The accuracy of the SVM and ANN based methods is ~86% and ~78% respectively." ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "hladr4pred" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/hladr4pred/> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/hladr4pred/" .
+
+<https://bio.tools/hladr4pred2> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:description "HLA-DR4Pred 2.0 is the update of the older version HLA-DR4Pred, which was a SVM and ANN based method to predict the HLA-DRB1*04:01 bindind peptides." ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "hladr4pred2" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/hladr4pred2/> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/hladr4pred2/" .
+
+<https://bio.tools/hlancpred> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:citation <https://doi.org/10.1093/bib/bbac192>,
+        "pubmed:35580839" ;
+    sc:description "HLAncPred is a webserver for the prediction of promiscuous binders of non-classical HLA-G and HLA-E alleles (HLA-G*01:01, HLA-G*01:03, HLA-G*01:04, HLA-E*01:01 and HLA-E*01:03)." ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "hlancpred" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/hlancpred/> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/hlancpred/" .
 
 <https://bio.tools/hlapers> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0199,
@@ -240112,7 +245000,7 @@ The first step is to use hlapers prepare-ref to build an index composed of Genco
     sc:url "https://github.com/genevol-usp/HLApers.git" .
 
 <https://bio.tools/hlareporter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
@@ -240131,14 +245019,14 @@ The first step is to use hlapers prepare-ref to build an index composed of Genco
 
 <https://bio.tools/hlarestrictor> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Protein features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3534 ;
     sc:citation <https://doi.org/10.1007/s00251-010-0493-5>,
@@ -240158,7 +245046,7 @@ The first step is to use hlapers prepare-ref to build an index composed of Genco
     biotools:primaryContact <http://orcid.org/0000-0001-7885-4311> .
 
 <https://bio.tools/hlo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3315 ;
     sc:description "A MATLAB code for Human Learning Optimization(HLO) algorithm" ;
@@ -240171,8 +245059,24 @@ The first step is to use hlapers prepare-ref to build an index composed of Genco
     sc:url "https://www.mathworks.com/matlabcentral/fileexchange/65577-human-learning-optimization-hlo-algorithm" ;
     biotools:primaryContact "Ling  Wang" .
 
+<https://bio.tools/hlp> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:citation <https://doi.org/10.1186/1471-2105-15-282>,
+        "pmcid:PMC4150950",
+        "pubmed:25141912" ;
+    sc:description "HLP is a server developed for predicting half-life of peptides in intestine like environment. It generates all possible mutants (single mutation at each position per cycle) for a peptide and predict/calculate half-life and physicochemical properties (e.g. charge, polarity, hydrophobicity, volume, pK) of mutant peptides." ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "hlp" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/hlp/> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/hlp/" .
+
 <https://bio.tools/hlppred-fuse> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0154,
@@ -240192,7 +245096,7 @@ HLPpred-Fuse could be established according to the following steps: (i) feature
     sc:url "http://thegleelab.org/HLPpred-Fuse" .
 
 <https://bio.tools/hlungdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0659,
@@ -240214,7 +245118,7 @@ HLPpred-Fuse could be established according to the following steps: (i) feature
     biotools:primaryContact "Tieliu Shi" .
 
 <https://bio.tools/hmcan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3053,
@@ -240231,7 +245135,7 @@ HLPpred-Fuse could be established according to the following steps: (i) feature
         "Valentina Boeva" .
 
 <https://bio.tools/hmd-arg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0219,
         edam:topic_0623,
@@ -240247,8 +245151,29 @@ HLPpred-Fuse could be established according to the following steps: (i) feature
     sc:name "HMD-ARG" ;
     sc:url "http://www.cbrc.kaust.edu.sa/HMDARG/" .
 
+<https://bio.tools/hmd-egopose> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_3384,
+        edam:topic_3421,
+        edam:topic_3474,
+        edam:topic_3520 ;
+    sc:citation <https://doi.org/10.1007/S11548-022-02688-Y>,
+        "pubmed:35701681" ;
+    sc:description "Head-mounted display-based egocentric marker-less tool and hand pose estimation for augmented surgical guidance." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3435,
+        edam:operation_3659 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "HMD-EgoPose" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/doughtmw/hmd-ego-pose" .
+
 <https://bio.tools/hmdad> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3474,
@@ -240264,7 +245189,7 @@ HLPpred-Fuse could be established according to the following steps: (i) feature
     biotools:primaryContact "De-Shuang Huang" .
 
 <https://bio.tools/hmdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0593,
@@ -240289,7 +245214,7 @@ HLPpred-Fuse could be established according to the following steps: (i) feature
     biotools:primaryContact "Contact Form" .
 
 <https://bio.tools/hmdbquery> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3172 ;
     sc:description "Define utilities for exploration of human metabolome database, including functions to retrieve specific metabolite entries and data snapshots with pairwise associations (metabolite-gene,-protein,-disease)." ;
@@ -240306,7 +245231,7 @@ HLPpred-Fuse could be established according to the following steps: (i) feature
     biotools:primaryContact "VJ Carey" .
 
 <https://bio.tools/hmi-pred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0128,
@@ -240327,7 +245252,7 @@ TM-align Score Threshold (0 to 1):.""" ;
     sc:url "https://interactome.ku.edu.tr/hmi" .
 
 <https://bio.tools/hml> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3071,
         edam:topic_3473 ;
@@ -240343,7 +245268,7 @@ TM-align Score Threshold (0 to 1):.""" ;
     biotools:primaryContact "Tatsuhiko Tsunoda" .
 
 <https://bio.tools/hmm-frame> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0736,
@@ -240361,14 +245286,14 @@ TM-align Score Threshold (0 to 1):.""" ;
 
 <https://bio.tools/hmm-tm> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2955" ;
-            sc:name "Sequence report" ;
-            sc:sameAs "http://edamontology.org/data_2955" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2955" ;
+            sc:encodingFormat "http://edamontology.org/format_1964" ;
+            sc:name "Sequence report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0820 ;
@@ -240389,7 +245314,7 @@ TM-align Score Threshold (0 to 1):.""" ;
     biotools:primaryContact <https://orcid.org/0000-0003-4935-2325> .
 
 <https://bio.tools/hmmalign_genouest> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0160 ;
@@ -240402,7 +245327,7 @@ TM-align Score Threshold (0 to 1):.""" ;
     sc:url "http://webservices.genouest.org/opal2/dashboard?command=docs" .
 
 <https://bio.tools/hmmbuild_genouest> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0160 ;
@@ -240415,7 +245340,7 @@ TM-align Score Threshold (0 to 1):.""" ;
     sc:url "http://webservices.genouest.org/opal2/dashboard?command=docs" .
 
 <https://bio.tools/hmmconvert_genouest> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0160 ;
@@ -240428,7 +245353,7 @@ TM-align Score Threshold (0 to 1):.""" ;
     sc:url "http://webservices.genouest.org/opal2/dashboard?command=docs" .
 
 <https://bio.tools/hmmcopy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -240449,7 +245374,7 @@ TM-align Score Threshold (0 to 1):.""" ;
         "Sohrab Shah" .
 
 <https://bio.tools/hmmemit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0160 ;
@@ -240463,187 +245388,156 @@ TM-align Score Threshold (0 to 1):.""" ;
 
 <https://bio.tools/hmmer3> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ],
+            sc:additionalType "http://edamontology.org/data_1364" ;
+            sc:name "Hidden Markov model" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0850" ;
-            sc:name "Sequence set" ;
-            sc:sameAs "http://edamontology.org/data_0850" ],
+            sc:additionalType "http://edamontology.org/data_1364" ;
+            sc:name "Hidden Markov model" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ],
+            sc:additionalType "http://edamontology.org/data_1364" ;
+            sc:name "Hidden Markov model" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0968" ;
-            sc:name "Keyword" ;
-            sc:sameAs "http://edamontology.org/data_0968" ],
+            sc:additionalType "http://edamontology.org/data_1233" ;
+            sc:name "Sequence set (protein)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1364" ;
-            sc:name "Hidden Markov model" ;
-            sc:sameAs "http://edamontology.org/data_1364" ],
+            sc:additionalType "http://edamontology.org/data_1364" ;
+            sc:name "Hidden Markov model" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1364" ;
-            sc:name "Hidden Markov model" ;
-            sc:sameAs "http://edamontology.org/data_1364" ],
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:name "Protein sequence" ],
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-            sc:identifier "http://edamontology.org/data_1364" ;
-            sc:name "Hidden Markov model" ;
-            sc:sameAs "http://edamontology.org/data_1364" ],
+            sc:additionalType "http://edamontology.org/data_2976" ;
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-            sc:identifier "http://edamontology.org/data_3494" ;
-            sc:name "DNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3494" ],
+            sc:additionalType "http://edamontology.org/data_1364" ;
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-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
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+            sc:additionalType "http://edamontology.org/data_0850" ;
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+            sc:additionalType "http://edamontology.org/data_1364" ;
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-            sc:name "Sequence set (protein)" ;
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+            sc:additionalType "http://edamontology.org/data_1364" ;
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-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ],
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-            sc:identifier "http://edamontology.org/data_0957" ;
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-            sc:sameAs "http://edamontology.org/data_0957" ] ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:name "Sequence alignment" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ],
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+            sc:additionalType "http://edamontology.org/data_1916" ;
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-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ],
+            sc:additionalType "http://edamontology.org/data_1364" ;
+            sc:encodingFormat "http://edamontology.org/format_3329" ;
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         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1361" ;
-            sc:name "Position frequency matrix" ;
-            sc:sameAs "http://edamontology.org/data_1361" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
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-            sc:sameAs "http://edamontology.org/data_2080" ],
+            sc:additionalType "http://edamontology.org/data_0955" ;
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-            sc:name "Data index" ;
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-            sc:identifier "http://edamontology.org/data_0857" ;
-            sc:name "Sequence search results" ;
-            sc:sameAs "http://edamontology.org/data_0857" ],
+            sc:additionalType "http://edamontology.org/data_0857" ;
+            sc:name "Sequence search results" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1364" ;
-            sc:name "Hidden Markov model" ;
-            sc:sameAs "http://edamontology.org/data_1364" ],
+            sc:additionalType "http://edamontology.org/data_1361" ;
+            sc:name "Position frequency matrix" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0857" ;
-            sc:name "Sequence search results" ;
-            sc:sameAs "http://edamontology.org/data_0857" ],
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:name "Report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2080" ;
-            sc:name "Database search results" ;
-            sc:sameAs "http://edamontology.org/data_2080" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:name "Sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0160,
         edam:topic_0623 ;
     sc:citation <https://doi.org/10.1093/nar/gkr367>,
+        <https://doi.org/10.1093/nar/gkt263>,
+        <https://doi.org/10.1093/nar/gky448>,
         <https://doi.org/10.1371/journal.pcbi.1002195>,
+        "pmcid:PMC3125773",
         "pmcid:PMC3197634",
-        "pubmed:22039361" ;
+        "pmcid:PMC3695513",
+        "pubmed:21593126",
+        "pubmed:22039361",
+        "pubmed:23598997",
+        "pubmed:29905871" ;
     sc:description "This tool is used for searching sequence databases for homologs of protein sequences, and for making protein sequence alignments. It implements methods using probabilistic models called profile hidden Markov models. The new HMMER3 project, HMMER is now as fast as BLAST for protein search." ;
     sc:featureList edam:operation_0230,
         edam:operation_0296,
@@ -240668,7 +245562,7 @@ TM-align Score Threshold (0 to 1):.""" ;
     biotools:primaryContact <http://orcid.org/0000-0001-6676-4706> .
 
 <https://bio.tools/hmmerctter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3293 ;
@@ -240685,7 +245579,7 @@ TM-align Score Threshold (0 to 1):.""" ;
     biotools:primaryContact "Arjen ten Have" .
 
 <https://bio.tools/hmmfetch_genouest> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0160 ;
@@ -240699,14 +245593,14 @@ TM-align Score Threshold (0 to 1):.""" ;
 
 <https://bio.tools/hmmgene> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:encodingFormat "http://edamontology.org/format_2305" ;
+            sc:name "Protein features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0160 ;
@@ -240727,7 +245621,7 @@ TM-align Score Threshold (0 to 1):.""" ;
     sc:url "http://cbs.dtu.dk/services/HMMgene/" .
 
 <https://bio.tools/hmmibd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0625,
@@ -240745,7 +245639,7 @@ TM-align Score Threshold (0 to 1):.""" ;
     biotools:primaryContact "Stephen F. Schaffner" .
 
 <https://bio.tools/hmmptm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0736,
@@ -240764,18 +245658,15 @@ TM-align Score Threshold (0 to 1):.""" ;
 
 <https://bio.tools/hmmscan_ebi> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:name "Protein sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ],
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:name "Protein features" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0858" ;
-            sc:name "Sequence signature matches" ;
-            sc:sameAs "http://edamontology.org/data_0858" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0858" ;
+            sc:name "Sequence signature matches" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0623 ;
@@ -240798,7 +245689,7 @@ TM-align Score Threshold (0 to 1):.""" ;
     biotools:primaryContact "Web Production" .
 
 <https://bio.tools/hmmscan_genouest> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0160 ;
@@ -240811,7 +245702,7 @@ TM-align Score Threshold (0 to 1):.""" ;
     sc:url "http://webservices.genouest.org/opal2/dashboard?command=docs" .
 
 <https://bio.tools/hmmsearch_genouest> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0160 ;
@@ -240824,7 +245715,7 @@ TM-align Score Threshold (0 to 1):.""" ;
     sc:url "http://webservices.genouest.org/opal2/dashboard?command=docs" .
 
 <https://bio.tools/hmmsim_genouest> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0160 ;
@@ -240837,7 +245728,7 @@ TM-align Score Threshold (0 to 1):.""" ;
     sc:url "http://webservices.genouest.org/opal2/dashboard?command=docs" .
 
 <https://bio.tools/hmmsplicer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3320 ;
     sc:citation "pubmed:21079731" ;
@@ -240851,7 +245742,7 @@ TM-align Score Threshold (0 to 1):.""" ;
     biotools:primaryContact "Brittany Worth" .
 
 <https://bio.tools/hmmstat_genouest> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0160 ;
@@ -240864,7 +245755,7 @@ TM-align Score Threshold (0 to 1):.""" ;
     sc:url "http://webservices.genouest.org/opal2/dashboard?command=docs" .
 
 <https://bio.tools/hmmtop> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0601,
@@ -240885,7 +245776,7 @@ TM-align Score Threshold (0 to 1):.""" ;
     biotools:primaryContact <http://orcid.org/0000-0001-8105-0285> .
 
 <https://bio.tools/hmmufotu> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0637,
         edam:topic_3293,
@@ -240904,18 +245795,15 @@ TM-align Score Threshold (0 to 1):.""" ;
 
 <https://bio.tools/hmoment> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2886" ;
-            sc:name "Protein sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2886" ] ;
+            sc:additionalType "http://edamontology.org/data_2886" ;
+            sc:name "Protein sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1520" ;
-            sc:name "Peptide hydrophobic moment" ;
-            sc:sameAs "http://edamontology.org/data_1520" ],
+            sc:additionalType "http://edamontology.org/data_1520" ;
+            sc:name "Peptide hydrophobic moment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1520" ;
-            sc:name "Peptide hydrophobic moment" ;
-            sc:sameAs "http://edamontology.org/data_1520" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1520" ;
+            sc:name "Peptide hydrophobic moment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0123 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -240944,8 +245832,24 @@ TM-align Score Threshold (0 to 1):.""" ;
     sc:softwareVersion "r6" ;
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/hmoment.html" .
 
+<https://bio.tools/hmrbase> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:citation <https://doi.org/10.1186/1471-2164-10-307>,
+        "pmcid:PMC2720991",
+        "pubmed:19589147" ;
+    sc:description "A database of hormones and their receptors" ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "hmrbase" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/hmrbase/> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/hmrbase/" .
+
 <https://bio.tools/hmrfbayeshic> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0602,
@@ -240965,7 +245869,7 @@ TM-align Score Threshold (0 to 1):.""" ;
         "Zheng Xu" .
 
 <https://bio.tools/hms-ics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -240985,7 +245889,7 @@ TM-align Score Threshold (0 to 1):.""" ;
     biotools:primaryContact "T. Imanishi" .
 
 <https://bio.tools/hmst-seq-analyzer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0654,
@@ -241005,7 +245909,7 @@ DNA methylation (5mC) and hydroxymethylation (5hmC) are chemical modifications o
     sc:url "https://hmst-seq.github.io/hmst/" .
 
 <https://bio.tools/hmtdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web API",
         "Web application" ;
@@ -241031,7 +245935,7 @@ DNA methylation (5mC) and hydroxymethylation (5hmC) are chemical modifications o
     sc:url "http://www.hmtdb.uniba.it/" .
 
 <https://bio.tools/hmvv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0605,
         edam:topic_0634,
@@ -241053,7 +245957,7 @@ The bioinformatics pipeline scripts associated with this application is uploaded
     sc:url "https://github.com/hmvv" .
 
 <https://bio.tools/hnatyping> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0654,
@@ -241071,7 +245975,7 @@ The bioinformatics pipeline scripts associated with this application is uploaded
     sc:url "http://sourceforge.net/projects/hnatyping/?source=navbar" .
 
 <https://bio.tools/hobbes> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0102,
@@ -241086,8 +245990,60 @@ The bioinformatics pipeline scripts associated with this application is uploaded
     sc:url "http://hobbes.ics.uci.edu" ;
     biotools:primaryContact "Information Systems Group" .
 
+<https://bio.tools/hobpre> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_3047,
+        edam:topic_3373,
+        edam:topic_3375,
+        edam:topic_3379 ;
+    sc:citation <https://doi.org/10.1186/S13321-021-00580-6>,
+        "pmcid:PMC8740492",
+        "pubmed:34991690" ;
+    sc:description "Machine learning model for predicting Human Oral Bioavailability" ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3659,
+        edam:operation_3891 ;
+    sc:isAccessibleForFree true ;
+    sc:license "CC-BY-NC-4.0" ;
+    sc:name "HobPre" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://www.icdrug.com/ICDrug/A" .
+
+<https://bio.tools/hocomoco> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_3125,
+        edam:topic_3169 ;
+    sc:citation <https://doi.org/10.1093/nar/gkx1106> ;
+    sc:description "HOmo sapiens transcription factor COmprehensive MOdel COllection contains transcription factor (TF) binding models (motifs) as position weight matrices for human and mouse transcription factors." ;
+    sc:featureList edam:operation_2409 ;
+    sc:name "HOCOMOCO" ;
+    sc:softwareVersion "11" ;
+    sc:url "https://hocomoco.autosome.org" .
+
+<https://bio.tools/hodd> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0602,
+        edam:topic_0634,
+        edam:topic_3053 ;
+    sc:citation <https://doi.org/10.1007/S12539-021-00494-9>,
+        "pubmed:34846641" ;
+    sc:description "A Manually Curated Database of Human Ophthalmic Diseases with Symptom Characteristics and Genetic Variants Towards Facilitating Quick and Definite Diagnosis." ;
+    sc:featureList edam:operation_3431 ;
+    sc:isAccessibleForFree true ;
+    sc:name "HODD" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://bio-bigdata.cn/HODD/" .
+
 <https://bio.tools/hodgkin-huxley-model> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3304,
@@ -241104,30 +246060,27 @@ The bioinformatics pipeline scripts associated with this application is uploaded
 
 <https://bio.tools/hogenom> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3021" ;
-            sc:name "UniProt accession" ;
-            sc:sameAs "http://edamontology.org/data_3021" ],
+            sc:additionalType "http://edamontology.org/data_3021" ;
+            sc:name "UniProt accession" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3021" ;
-            sc:name "UniProt accession" ;
-            sc:sameAs "http://edamontology.org/data_3021" ],
+            sc:additionalType "http://edamontology.org/data_3021" ;
+            sc:name "UniProt accession" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3021" ;
-            sc:name "UniProt accession" ;
-            sc:sameAs "http://edamontology.org/data_3021" ] ;
+            sc:additionalType "http://edamontology.org/data_3021" ;
+            sc:name "UniProt accession" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ],
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0872" ;
-            sc:name "Phylogenetic tree" ;
-            sc:sameAs "http://edamontology.org/data_0872" ],
+            sc:additionalType "http://edamontology.org/data_0872" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Phylogenetic tree" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -241147,7 +246100,7 @@ The bioinformatics pipeline scripts associated with this application is uploaded
     sc:url "http://pbil.univ-lyon1.fr/databases/hogenom3.html" .
 
 <https://bio.tools/hogenom_evoscen> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:description "A set of webservices allowing to browse Hogenom 4 evolutionary scenarios." ;
@@ -241158,7 +246111,7 @@ The bioinformatics pipeline scripts associated with this application is uploaded
     sc:url "http://prodom.prabi.fr/prodom/2006.1/documentation/hogenom_evoscen.html" .
 
 <https://bio.tools/hogenom_tree> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_3071,
         edam:topic_3293 ;
@@ -241170,16 +246123,32 @@ The bioinformatics pipeline scripts associated with this application is uploaded
     sc:softwareVersion "1" ;
     sc:url "http://prodom.prabi.fr/prodom/current/documentation/hogenom_tree.html" .
 
+<https://bio.tools/holistic> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0654,
+        edam:topic_2259,
+        edam:topic_2640,
+        edam:topic_3673 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAB816>,
+        "pubmed:34888626" ;
+    sc:description "Unambiguous prediction of multiple double minute chromosome architectures." ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "HolistIC" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://www.github.com/mhayes20/HolistIC" .
+
 <https://bio.tools/holovir> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2259 ;
     sc:citation <https://doi.org/10.3389/fmicb.2016.00822> ;
@@ -241192,7 +246161,7 @@ The bioinformatics pipeline scripts associated with this application is uploaded
     sc:url "https://github.com/plaffy/HoloVir" .
 
 <https://bio.tools/homa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -241208,8 +246177,28 @@ The bioinformatics pipeline scripts associated with this application is uploaded
     sc:url "http://www-nmr.cabm.rutgers.edu/HOMA/" ;
     biotools:primaryContact "CABM Structural Bioinformatics Laboratory" .
 
+<https://bio.tools/homelette> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_2814 ;
+    sc:author <https://orcid.org/0000-0002-5228-3896> ;
+    sc:citation <https://doi.org/10.1093/bioinformatics/btab866>,
+        "pmcid:PMC8896651",
+        "pubmed:34954790" ;
+    sc:description "A unified and modular interface to homology modelling software" ;
+    sc:featureList edam:operation_0321,
+        edam:operation_0477 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "homelette" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://homelette.readthedocs.io/en/latest/> ;
+    sc:url "https://github.com/PhilippJunk/homelette" .
+
 <https://bio.tools/homeosplitter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0196,
@@ -241227,7 +246216,7 @@ The bioinformatics pipeline scripts associated with this application is uploaded
     biotools:primaryContact "Vincent Ranwez" .
 
 <https://bio.tools/homer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "HOMER contains a novel motif discovery algorithm that was designed for regulatory element analysis in genomics applications (DNA only, no protein).  It is a differential motif discovery algorithm, which means that it takes two sets of sequences and tries to identify the regulatory elements that are specifically enriched in on set relative to the other.  It uses ZOOPS scoring (zero or one occurrence per sequence) coupled with the hypergeometric enrichment calculations (or binomial) to determine motif enrichment.  HOMER also tries its best to account for sequenced bias in the dataset.  It was designed with ChIP-Seq and promoter analysis in mind, but can be applied to pretty much any nucleic acids motif finding problem." ;
     sc:featureList edam:operation_0238 ;
     sc:name "homer" ;
@@ -241235,7 +246224,7 @@ The bioinformatics pipeline scripts associated with this application is uploaded
     sc:url "http://homer.ucsd.edu/homer/motif/" .
 
 <https://bio.tools/homer-a> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btu773> ;
@@ -241252,7 +246241,7 @@ The bioinformatics pipeline scripts associated with this application is uploaded
     biotools:primaryContact "Silvio C.E. Tosatto" .
 
 <https://bio.tools/homer-m> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btu773> ;
@@ -241269,7 +246258,7 @@ The bioinformatics pipeline scripts associated with this application is uploaded
     biotools:primaryContact "Silvio C.E. Tosatto" .
 
 <https://bio.tools/homolens> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0621,
@@ -241291,7 +246280,7 @@ The bioinformatics pipeline scripts associated with this application is uploaded
     biotools:primaryContact "Guy Perrière" .
 
 <https://bio.tools/homologous_series_detection> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2258,
         edam:topic_3332,
@@ -241308,7 +246297,7 @@ The bioinformatics pipeline scripts associated with this application is uploaded
     biotools:primaryContact "Martin Loos" .
 
 <https://bio.tools/homolosampler> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3070 ;
     sc:description "This is a command line tool for sampling related sequences from Ensembl. It requires PyCogent, Numpy, SQLAlchemy, PyMysql, Click and SciTrack. At present, this tool provides capabilities to support sampling one-to-one orthologs from protein coding genes stored in an Ensembl MySQl database. It can either write out the protein coding sequences from the canonical CDS, or it can write out the Ensembl multiple sequence alignment of the entire gene with annotated features masked." ;
@@ -241323,7 +246312,7 @@ The bioinformatics pipeline scripts associated with this application is uploaded
     biotools:primaryContact "Australia" .
 
 <https://bio.tools/homolwat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0176,
@@ -241349,7 +246338,7 @@ available at http://lmc.uab.cat/homolwat.""" ;
     sc:url "http://lmc.uab.es/homolwat" .
 
 <https://bio.tools/homopolish> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0621,
@@ -241368,7 +246357,7 @@ available at http://lmc.uab.cat/homolwat.""" ;
     biotools:primaryContact <https://orcid.org/0000-0001-9253-2394> .
 
 <https://bio.tools/homozygositymapper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0625,
@@ -241394,7 +246383,7 @@ available at http://lmc.uab.cat/homolwat.""" ;
     biotools:primaryContact "Support" .
 
 <https://bio.tools/homsi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0622,
@@ -241411,7 +246400,7 @@ available at http://lmc.uab.cat/homolwat.""" ;
     biotools:primaryContact "İGBAM" .
 
 <https://bio.tools/honeycomb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_3300,
@@ -241431,7 +246420,7 @@ available at http://lmc.uab.cat/homolwat.""" ;
     sc:url "https://brown-ccv.github.io/honeycomb-docs/" .
 
 <https://bio.tools/hooknet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_2640,
@@ -241449,7 +246438,7 @@ Upload medical imaging data easily and securely.""" ;
     sc:url "http://grand-challenge.org" .
 
 <https://bio.tools/hopach> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3071,
@@ -241468,7 +246457,7 @@ Upload medical imaging data easily and securely.""" ;
     biotools:primaryContact "Katherine S. Pollard" .
 
 <https://bio.tools/hophage> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0637,
@@ -241485,7 +246474,7 @@ Upload medical imaging data easily and securely.""" ;
     biotools:primaryContact <https://orcid.org/0000-0002-6376-218X> .
 
 <https://bio.tools/hopma> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0176,
         edam:topic_0593,
         edam:topic_0611,
@@ -241505,8 +246494,21 @@ NOn-Linear rigid Block NMA approach (NOLB) a new conceptually simple and computa
     sc:name "HOPMA" ;
     sc:url "https://team.inria.fr/nano-d/software/nolb-normal-modes" .
 
+<https://bio.tools/hoppred> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:description "A webserver to predict peptide hormones" ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "hoppred" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/hoppred/index.php> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/hoppred/index.php" .
+
 <https://bio.tools/hops_malt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_0769,
@@ -241528,7 +246530,7 @@ HOPS is a java pipeline which focuses on screening MALT data (see Table of Conte
     sc:url "https://github.com/rhuebler/HOPS" .
 
 <https://bio.tools/hops_tk> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_3277,
@@ -241545,7 +246547,7 @@ The Highly Optimized Polytope Sampling toolbox is an open-source C++17 library f
     sc:url "https://github.com/modsim/hops/" .
 
 <https://bio.tools/hora> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -241567,8 +246569,35 @@ The Highly Optimized Polytope Sampling toolbox is an open-source C++17 library f
     sc:url "http://prodata.swmed.edu/horaserver/" ;
     biotools:primaryContact "N. Grishin" .
 
+<https://bio.tools/hordb> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:name "Sequence" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2099" ;
+            sc:name "Name" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0749,
+        edam:topic_0780,
+        edam:topic_3300,
+        edam:topic_3500 ;
+    sc:citation <https://doi.org/10.1038/S41597-022-01287-5>,
+        "pmcid:PMC9039076",
+        "pubmed:35469024" ;
+    sc:description "HORDB a comprehensive database of peptide hormones." ;
+    sc:featureList edam:operation_0418,
+        edam:operation_3646 ;
+    sc:isAccessibleForFree true ;
+    sc:name "HORDB" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://hordb.cpu-bioinfor.org" .
+
 <https://bio.tools/horovod> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_3474 ;
     sc:description "Horovod is a distributed deep learning training framework for TensorFlow, Keras, PyTorch, and Apache MXNet. The goal of Horovod is to make distributed deep learning fast and easy to use." ;
@@ -241579,14 +246608,14 @@ The Highly Optimized Polytope Sampling toolbox is an open-source C++17 library f
 
 <https://bio.tools/hostzap> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3494" ;
-            sc:name "DNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3494" ] ;
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:encodingFormat "http://edamontology.org/format_1931" ;
+            sc:name "DNA sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3494" ;
-            sc:name "DNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3494" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "DNA sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3047,
         edam:topic_3697 ;
@@ -241601,7 +246630,7 @@ The Highly Optimized Polytope Sampling toolbox is an open-source C++17 library f
     sc:url "https://github.com/quadram-institute-bioscience/hostzap" .
 
 <https://bio.tools/hot_scan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0160,
@@ -241617,7 +246646,7 @@ The Highly Optimized Polytope Sampling toolbox is an open-source C++17 library f
     biotools:primaryContact "Rafael Rosales" .
 
 <https://bio.tools/hotnet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0602,
@@ -241634,7 +246663,7 @@ The Highly Optimized Polytope Sampling toolbox is an open-source C++17 library f
     biotools:primaryContact "Ben Raphael" .
 
 <https://bio.tools/hotnet2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3360 ;
     sc:citation <https://doi.org/10.1089/cmb.2010.0265> ;
@@ -241650,7 +246679,7 @@ The Highly Optimized Polytope Sampling toolbox is an open-source C++17 library f
     sc:url "https://github.com/raphael-group/hotnet2" .
 
 <https://bio.tools/hotpoint> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0128,
@@ -241671,7 +246700,7 @@ The Highly Optimized Polytope Sampling toolbox is an open-source C++17 library f
     biotools:primaryContact "HotPOINT Support" .
 
 <https://bio.tools/hotregion> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -241693,7 +246722,7 @@ The Highly Optimized Polytope Sampling toolbox is an open-source C++17 library f
     biotools:primaryContact "Engin Cukuroglu" .
 
 <https://bio.tools/hotspot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1002/prot.24278> ;
@@ -241707,7 +246736,7 @@ The Highly Optimized Polytope Sampling toolbox is an open-source C++17 library f
     sc:url "http://sfb.kaust.edu.sa/Pages/Software.aspx" .
 
 <https://bio.tools/hotspot3d> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_2640,
@@ -241728,7 +246757,7 @@ No need to screen for mutation types provided. Any variant classifications can f
     sc:url "http://niulab.scgrid.cn/HotSpot3D/" .
 
 <https://bio.tools/hotspot_sperm-typing_> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0632,
@@ -241749,42 +246778,42 @@ No need to screen for mutation types provided. Any variant classifications can f
 
 <https://bio.tools/hotspot_wizard> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ],
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein structure" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ],
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1463" ;
-            sc:name "Small molecule structure" ;
-            sc:sameAs "http://edamontology.org/data_1463" ] ;
+            sc:additionalType "http://edamontology.org/data_1463" ;
+            sc:encodingFormat "http://edamontology.org/format_1196" ;
+            sc:name "Small molecule structure" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0896" ;
-            sc:name "Protein report" ;
-            sc:sameAs "http://edamontology.org/data_0896" ],
+            sc:additionalType "http://edamontology.org/data_0872" ;
+            sc:encodingFormat "http://edamontology.org/format_1910" ;
+            sc:name "Phylogenetic tree" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1537" ;
-            sc:name "Protein structure report" ;
-            sc:sameAs "http://edamontology.org/data_1537" ],
+            sc:additionalType "http://edamontology.org/data_1537" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Protein structure report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1384" ;
-            sc:name "Sequence alignment (protein)" ;
-            sc:sameAs "http://edamontology.org/data_1384" ],
+            sc:additionalType "http://edamontology.org/data_3497" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "DNA sequence (raw)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0872" ;
-            sc:name "Phylogenetic tree" ;
-            sc:sameAs "http://edamontology.org/data_0872" ],
+            sc:additionalType "http://edamontology.org/data_1461" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein-ligand complex" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1461" ;
-            sc:name "Protein-ligand complex" ;
-            sc:sameAs "http://edamontology.org/data_1461" ],
+            sc:additionalType "http://edamontology.org/data_1384" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment (protein)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3497" ;
-            sc:name "DNA sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_3497" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0896" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Protein report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0160,
@@ -241833,7 +246862,7 @@ No need to screen for mutation types provided. Any variant classifications can f
     biotools:primaryContact "HotSpot Wizard team" .
 
 <https://bio.tools/hotspotannotations> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_2640,
@@ -241850,7 +246879,7 @@ Hotspots, recurrently mutated DNA positions in cancer, are thought to be oncogen
     sc:url "http://bioinformatica.mty.itesm.mx/HotSpotAnnotations" .
 
 <https://bio.tools/hotspotter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation "pmcid:PMC1462870",
@@ -241865,7 +246894,7 @@ Hotspots, recurrently mutated DNA positions in cancer, are thought to be oncogen
     sc:url "http://stephenslab.uchicago.edu/software.html#hotspotter" .
 
 <https://bio.tools/hotspring> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0099,
@@ -241883,7 +246912,7 @@ Hotspots, recurrently mutated DNA positions in cancer, are thought to be oncogen
     biotools:primaryContact "Ranjit Prasad Bahadur" .
 
 <https://bio.tools/hotwater> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0166,
@@ -241910,30 +246939,27 @@ Note: This tool relies on EDTSurf, therefore runs only on Linux. If you have a l
 
 <https://bio.tools/hovergen> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3021" ;
-            sc:name "UniProt accession" ;
-            sc:sameAs "http://edamontology.org/data_3021" ],
+            sc:additionalType "http://edamontology.org/data_3021" ;
+            sc:name "UniProt accession" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3021" ;
-            sc:name "UniProt accession" ;
-            sc:sameAs "http://edamontology.org/data_3021" ],
+            sc:additionalType "http://edamontology.org/data_3021" ;
+            sc:name "UniProt accession" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3021" ;
-            sc:name "UniProt accession" ;
-            sc:sameAs "http://edamontology.org/data_3021" ] ;
+            sc:additionalType "http://edamontology.org/data_3021" ;
+            sc:name "UniProt accession" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0872" ;
-            sc:name "Phylogenetic tree" ;
-            sc:sameAs "http://edamontology.org/data_0872" ],
+            sc:additionalType "http://edamontology.org/data_0916" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Gene report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ],
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Sequence record" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0916" ;
-            sc:name "Gene report" ;
-            sc:sameAs "http://edamontology.org/data_0916" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0872" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Phylogenetic tree" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0194,
@@ -241951,8 +246977,31 @@ Note: This tool relies on EDTSurf, therefore runs only on Linux. If you have a l
     sc:url "http://pbil.univ-lyon1.fr/databases/hovergen.html" ;
     biotools:primaryContact "Laurent Duret" .
 
+<https://bio.tools/how_are_we_stranded_here> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0091,
+        edam:topic_0102,
+        edam:topic_0203,
+        edam:topic_3170,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.1186/S12859-022-04572-7>,
+        "pmcid:PMC8783475",
+        "pubmed:35065593" ;
+    sc:description "Python package for testing strandedness of RNA-Seq fastq files." ;
+    sc:featureList edam:operation_2428,
+        edam:operation_3258,
+        edam:operation_3435 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "how_are_we_stranded_here" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/betsig/how_are_we_stranded_here" .
+
 <https://bio.tools/howru> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3068,
         edam:topic_3263,
         edam:topic_3318,
@@ -241968,7 +247017,7 @@ Note: This tool relies on EDTSurf, therefore runs only on Linux. If you have a l
     sc:url "https://www.taleka.com/howru/" .
 
 <https://bio.tools/hpar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0078,
@@ -241988,7 +247037,7 @@ Note: This tool relies on EDTSurf, therefore runs only on Linux. If you have a l
     biotools:primaryContact "Laurent Gatto" .
 
 <https://bio.tools/hpastainr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0121,
@@ -242008,7 +247057,7 @@ HPAStain.R is an R package/Shiny app used to query the Human Protein Atlas for s
     sc:url "https://32tim32.shinyapps.io/HPAStainR/" .
 
 <https://bio.tools/hpc-reditools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3170,
@@ -242030,7 +247079,7 @@ The following image explains the high-level architecture.""" ;
     sc:url "https://github.com/BioinfoUNIBA/REDItools2" .
 
 <https://bio.tools/hpeak> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0654,
@@ -242048,7 +247097,7 @@ The following image explains the high-level architecture.""" ;
     biotools:primaryContact "Z.S.Qin" .
 
 <https://bio.tools/hpenet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0196,
@@ -242071,7 +247120,7 @@ Paeonia lactiflora Pall., commonly known as the herbaceous peony, is an ornament
     sc:url "http://bioinformatics.cau.edu.cn/HpeNet" .
 
 <https://bio.tools/hpepdock> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -242086,7 +247135,7 @@ Paeonia lactiflora Pall., commonly known as the herbaceous peony, is an ornament
     sc:url "http://huanglab.phys.hust.edu.cn/hpepdock/" .
 
 <https://bio.tools/hpg-dhunter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0654,
@@ -242109,7 +247158,7 @@ HPG-Dhunter is an interactive tool for detecting Differentially Methylathed Regi
     sc:url "https://github.com/grev-uv/hpg-dhunter" .
 
 <https://bio.tools/hpg_aligner> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0102,
@@ -242129,7 +247178,7 @@ HPG-Dhunter is an interactive tool for detecting Differentially Methylathed Regi
         "Joaquín Dopazo" .
 
 <https://bio.tools/hpg_pore> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654,
@@ -242143,16 +247192,40 @@ HPG-Dhunter is an interactive tool for detecting Differentially Methylathed Regi
     sc:url "https://github.com/opencb/hpg-pore/wiki" ;
     biotools:primaryContact "Joaquín Dopazo" .
 
+<https://bio.tools/hpip> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0080,
+        edam:topic_0121,
+        edam:topic_0128,
+        edam:topic_3324,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1093/BIOADV/VBAC038>,
+        "pmcid:PMC9154073",
+        "pubmed:35669347" ;
+    sc:description "An R/Bioconductor package for predicting host-pathogen protein-protein interactions from protein sequences using ensemble machine learning approach." ;
+    sc:featureList edam:operation_2464,
+        edam:operation_2492,
+        edam:operation_3461 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "HPiP" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://bioconductor.org/packages/release/bioc/manuals/HPiP/man/HPiP.pdf> ;
+    sc:url "https://github.com/BabuLab-UofR/HPiP" .
+
 <https://bio.tools/hplcsimulator> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2050" ;
-            sc:name "Molecular property (general)" ;
-            sc:sameAs "http://edamontology.org/data_2050" ] ;
+            sc:additionalType "http://edamontology.org/data_2050" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Molecular property (general)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3370 ;
     sc:citation <https://doi.org/10.1021/ed085p1265> ;
@@ -242166,7 +247239,7 @@ HPG-Dhunter is an interactive tool for detecting Differentially Methylathed Regi
     sc:url "http://www.hplcsimulator.org/" .
 
 <https://bio.tools/hplusplus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0097,
@@ -242191,7 +247264,7 @@ HPG-Dhunter is an interactive tool for detecting Differentially Methylathed Regi
     biotools:primaryContact "Ramu Anandakrishnan" .
 
 <https://bio.tools/hpm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3053 ;
@@ -242209,7 +247282,7 @@ HPG-Dhunter is an interactive tool for detecting Differentially Methylathed Regi
     biotools:primaryContact <https://orcid.org/0000-0003-1974-0271> .
 
 <https://bio.tools/hpo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Ontology",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0089,
@@ -242235,8 +247308,30 @@ HPG-Dhunter is an interactive tool for detecting Differentially Methylathed Regi
         "Peter Robinson",
         "Sebastian Köhler" .
 
+<https://bio.tools/hpodnets> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0089,
+        edam:topic_0602,
+        edam:topic_0625,
+        edam:topic_0634,
+        edam:topic_2229 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAB729>,
+        "pubmed:34672333" ;
+    sc:description "Deep graph convolutional networks for predicting human protein-phenotype associations." ;
+    sc:featureList edam:operation_1777,
+        edam:operation_3092,
+        edam:operation_3927 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "HPODNets" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/liulizhi1996/HPODNets" .
+
 <https://bio.tools/hpofiller> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0128,
@@ -242253,7 +247348,7 @@ HPG-Dhunter is an interactive tool for detecting Differentially Methylathed Regi
     biotools:primaryContact "Shanfeng Zhu" .
 
 <https://bio.tools/hpolabeler> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0128,
@@ -242270,7 +247365,7 @@ Predict human protein-HPO term associations using Learning to Rank.""" ;
     sc:url "http://issubmission.sjtu.edu.cn/hpolabeler/" .
 
 <https://bio.tools/hprd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0121,
@@ -242294,7 +247389,7 @@ Predict human protein-HPO term associations using Learning to Rank.""" ;
     biotools:primaryContact "Suraj Peri" .
 
 <https://bio.tools/hprep> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -242315,7 +247410,7 @@ HPREP : HUMAN PROTEOME REPEATS.""" ;
     sc:url "http://bioinfo.bdu.ac.in/hprep" .
 
 <https://bio.tools/hpscreg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3379,
@@ -242330,7 +247425,7 @@ HPREP : HUMAN PROTEOME REPEATS.""" ;
     sc:url "https://hpscreg.eu" .
 
 <https://bio.tools/hptt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_2885,
@@ -242348,7 +247443,7 @@ HPREP : HUMAN PROTEOME REPEATS.""" ;
     biotools:primaryContact "Hongdong Tan" .
 
 <https://bio.tools/hpul> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0621,
@@ -242376,7 +247471,7 @@ Hemicentrotus pulcherrimus (A. Agassiz, 1863) (Animaria: Echinodermata: Echinoid
     sc:url "http://cell-innovation.nig.ac.jp/Hpul/" .
 
 <https://bio.tools/hpviewer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_0781,
@@ -242392,7 +247487,7 @@ Hemicentrotus pulcherrimus (A. Agassiz, 1863) (Animaria: Echinodermata: Echinoid
     biotools:primaryContact "Zhiheng Pei" .
 
 <https://bio.tools/hreg-cncc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0602,
@@ -242411,8 +247506,23 @@ Hemicentrotus pulcherrimus (A. Agassiz, 1863) (Animaria: Echinodermata: Echinoid
     sc:url "https://github.com/AMSSwanglab/hReg-CNCC" ;
     biotools:primaryContact <https://orcid.org/0000-0001-9241-8161> .
 
+<https://bio.tools/hrel> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Desktop application" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1016/J.NEUNET.2021.12.017>,
+        "pubmed:35042156" ;
+    sc:description "Filter pruning based on High Relevance between activation maps and class labels." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_0455,
+        edam:operation_3695 ;
+    sc:isAccessibleForFree true ;
+    sc:name "HRel" ;
+    sc:url "https://github.com/sarvanichinthapalli/HRel" .
+
 <https://bio.tools/hrgcnplus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3047,
         edam:topic_3300,
@@ -242432,7 +247542,7 @@ Hemicentrotus pulcherrimus (A. Agassiz, 1863) (Animaria: Echinodermata: Echinoid
         "Tingjun Hou" .
 
 <https://bio.tools/hribo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -242456,7 +247566,7 @@ We present HRIBO (High-throughput annotation by Ribo-seq), a workflow to enable
     sc:url "https://github.com/RickGelhausen/HRIBO" .
 
 <https://bio.tools/hrm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0602,
@@ -242474,8 +247584,31 @@ We present HRIBO (High-throughput annotation by Ribo-seq), a workflow to enable
     sc:url "http://homepages.inf.ed.ac.uk/gsanguin/software.html" ;
     biotools:primaryContact "Andrea Ocone" .
 
+<https://bio.tools/hrm-rna> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0121,
+        edam:topic_0203,
+        edam:topic_0602,
+        edam:topic_3170,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAB676>,
+        "pubmed:34570169" ;
+    sc:description "Perform differential expression tests for RNASeq at scale with a configurable interface and visualize results with tunable control over p-value thresholds." ;
+    sc:featureList edam:operation_1781,
+        edam:operation_2437,
+        edam:operation_3223,
+        edam:operation_3928 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "HRM" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/SD2E/omics_tools" .
+
 <https://bio.tools/hrnet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3382,
         edam:topic_3474 ;
@@ -242491,7 +247624,7 @@ HigherHRNet-Human-Pose-Estimation.""" ;
     sc:url "https://github.com/HRNet" .
 
 <https://bio.tools/hrrd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0102,
@@ -242514,7 +247647,7 @@ HigherHRNet-Human-Pose-Estimation.""" ;
     sc:url "http://www.hmuhrrd.com/HRRD" .
 
 <https://bio.tools/hrtbldb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3125,
@@ -242534,7 +247667,7 @@ HigherHRNet-Human-Pose-Estimation.""" ;
     biotools:primaryContact "Victor Jin" .
 
 <https://bio.tools/hruv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3077,
@@ -242551,7 +247684,7 @@ hRUV is a package for normalisation of multiple batches of metabolomics data in
     sc:url "https://shiny.maths.usyd.edu.au/hRUV/" .
 
 <https://bio.tools/hrvanalysis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3335 ;
     sc:citation <https://doi.org/10.3389/fphys.2016.00557>,
@@ -242567,7 +247700,7 @@ hRUV is a package for normalisation of multiple batches of metabolomics data in
     sc:url "https://anslabtools.univ-st-etienne.fr/en/index.html" .
 
 <https://bio.tools/hrwr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0208,
@@ -242582,14 +247715,12 @@ hRUV is a package for normalisation of multiple batches of metabolomics data in
 
 <https://bio.tools/hs-blastn> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0857" ;
-            sc:name "Sequence search results" ;
-            sc:sameAs "http://edamontology.org/data_0857" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0857" ;
+            sc:name "Sequence search results" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0196,
@@ -242604,7 +247735,7 @@ hRUV is a package for normalisation of multiple batches of metabolomics data in
     sc:url "https://github.com/chenying2016/queries" .
 
 <https://bio.tools/hs-tdt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3053,
@@ -242620,7 +247751,7 @@ hRUV is a package for normalisation of multiple batches of metabolomics data in
     biotools:primaryContact "Shuanglin Zhang" .
 
 <https://bio.tools/hsa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0082,
@@ -242639,7 +247770,7 @@ hRUV is a package for normalisation of multiple batches of metabolomics data in
     biotools:primaryContact "Zhengqing Ouyang" .
 
 <https://bio.tools/hsepred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_2814 ;
@@ -242653,7 +247784,7 @@ hRUV is a package for normalisation of multiple batches of metabolomics data in
     sc:url "http://sunflower.kuicr.kyoto-u.ac.jp/~sjn/hse/" .
 
 <https://bio.tools/hslpred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -242669,11 +247800,11 @@ hRUV is a package for normalisation of multiple batches of metabolomics data in
         "Windows" ;
     sc:softwareHelp <http://crdd.osdd.net/raghava/hslpred/algo.html>,
         <http://crdd.osdd.net/raghava/hslpred/help.html> ;
-    sc:url "http://www.imtech.res.in/raghava/hslpred/" ;
+    sc:url "http://webs.iiitd.edu.in/raghava/hslpred/" ;
     biotools:primaryContact "Dr. Raghava" .
 
 <https://bio.tools/hsm6ap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2640,
         edam:topic_3295,
@@ -242692,8 +247823,34 @@ DNA methylation is an important epigenetic modification, which is closely relate
     sc:name "HSM6AP" ;
     sc:url "http://lab.malab.cn/~lijing/HSM6AP.html" .
 
+<https://bio.tools/hsmotifdiscover> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:name "Sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0128,
+        edam:topic_0160,
+        edam:topic_0203,
+        edam:topic_0601,
+        edam:topic_3518 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC437>,
+        "pubmed:35771633" ;
+    sc:description "Identification of motifs in sequences composed of non-single-letter elements." ;
+    sc:featureList edam:operation_0238,
+        edam:operation_0239,
+        edam:operation_0337,
+        edam:operation_2238 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "HSMotifDiscover" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://hsmotifdiscover.shinyapps.io/HSMotifDiscover_ShinyApp/" .
+
 <https://bio.tools/hspmdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_2229,
@@ -242716,14 +247873,13 @@ HSPMdb will assist the scientific community working in the area of chaperone bio
 
 <https://bio.tools/hssp> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1127" ;
-            sc:name "PDB ID" ;
-            sc:sameAs "http://edamontology.org/data_1127" ] ;
+            sc:additionalType "http://edamontology.org/data_1127" ;
+            sc:name "PDB ID" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Protein features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_3542 ;
     sc:citation <https://doi.org/10.1093/nar/gkq1105> ;
@@ -242737,7 +247893,7 @@ HSPMdb will assist the scientific community working in the area of chaperone bio
     sc:url "http://swift.cmbi.ru.nl/gv/hssp/" .
 
 <https://bio.tools/hsst> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3168,
         edam:topic_3300,
@@ -242755,10 +247911,10 @@ Novel paradigm for optimal parameter selection of a generic spike sorting algori
 
 <https://bio.tools/hsymdock> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2275 ;
     sc:citation <https://doi.org/10.1093/nar/gky398>,
@@ -242774,7 +247930,7 @@ Novel paradigm for optimal parameter selection of a generic spike sorting algori
     sc:url "http://huanglab.phys.hust.edu.cn/hsymdock/" .
 
 <https://bio.tools/hta> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_2640,
@@ -242799,8 +247955,43 @@ Novel paradigm for optimal parameter selection of a generic spike sorting algori
         "Windows" ;
     sc:url "https://github.com/alonalj/hta" .
 
+<https://bio.tools/htd> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:citation <https://doi.org/10.1109/TIP.2021.3126423>,
+        "pubmed:34780326" ;
+    sc:description "Heterogeneous Task Decoupling for Two-Stage Object Detection." ;
+    sc:featureList edam:operation_3436,
+        edam:operation_3659 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Apache-2.0" ;
+    sc:name "HTD" ;
+    sc:operatingSystem "Linux",
+        "Mac" ;
+    sc:url "https://github.com/CityU-AIM-Group/HTD" .
+
+<https://bio.tools/htem-db> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0769,
+        edam:topic_3474,
+        edam:topic_3489 ;
+    sc:citation <https://doi.org/10.1016/J.PATTER.2021.100373>,
+        "pmcid:PMC8672147",
+        "pubmed:34950901" ;
+    sc:description "High Throughput Experimental Materials Database" ;
+    sc:featureList edam:operation_2422,
+        edam:operation_3431,
+        edam:operation_3436 ;
+    sc:isAccessibleForFree true ;
+    sc:name "HTEM-DB" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://htem.nrel.gov" .
+
 <https://bio.tools/hthmotif> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0654,
@@ -242813,7 +248004,7 @@ Novel paradigm for optimal parameter selection of a generic spike sorting algori
     sc:url "http://stormo.wustl.edu/HTHmotif" .
 
 <https://bio.tools/htm-one> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0736,
@@ -242830,14 +248021,14 @@ Novel paradigm for optimal parameter selection of a generic spike sorting algori
 
 <https://bio.tools/html4blast> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0857" ;
-            sc:name "Sequence search results" ;
-            sc:sameAs "http://edamontology.org/data_0857" ] ;
+            sc:additionalType "http://edamontology.org/data_0857" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Sequence search results" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:citation <https://doi.org/10.1093/nar/gkw343>,
@@ -242853,7 +248044,7 @@ Novel paradigm for optimal parameter selection of a generic spike sorting algori
     biotools:primaryContact "Galaxy Support Team" .
 
 <https://bio.tools/html5_pivotviewer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_3365 ;
@@ -242866,8 +248057,33 @@ Novel paradigm for optimal parameter selection of a generic spike sorting algori
     sc:softwareHelp <https://www.cbrg.ox.ac.uk/data/pivotviewer/tutorial.shtml> ;
     sc:url "http://www.cbrg.ox.ac.uk/data/pivotviewer/" .
 
+<https://bio.tools/htp> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_0199,
+        edam:topic_0625,
+        edam:topic_0780,
+        edam:topic_3810 ;
+    sc:citation <https://doi.org/10.1016/J.XPLC.2022.100331>,
+        "pmcid:PMC9284292",
+        "pubmed:35643087" ;
+    sc:description "Exploiting maize haplotype-tag polymorphisms for germplasm resource analyses and genomics-informed breeding." ;
+    sc:featureList edam:operation_0487,
+        edam:operation_3196,
+        edam:operation_3557,
+        edam:operation_3894 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Apache-2.0" ;
+    sc:name "HTP" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://htp.plantdna.site/" .
+
 <https://bio.tools/htp-oligodesigner> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0632,
@@ -242885,7 +248101,7 @@ Novel paradigm for optimal parameter selection of a generic spike sorting algori
     biotools:primaryContact "Gustavo Machado Alvares de Lima" .
 
 <https://bio.tools/htpheno> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0780 ;
@@ -242901,7 +248117,7 @@ Novel paradigm for optimal parameter selection of a generic spike sorting algori
     sc:url "http://htpheno.ipk-gatersleben.de/" .
 
 <https://bio.tools/htqpcr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -242922,7 +248138,7 @@ Novel paradigm for optimal parameter selection of a generic spike sorting algori
     biotools:primaryContact <http://orcid.org/0000-0003-1741-0738> .
 
 <https://bio.tools/htr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2269,
@@ -242940,7 +248156,7 @@ Novel paradigm for optimal parameter selection of a generic spike sorting algori
     biotools:primaryContact "Dmitri Zaykin" .
 
 <https://bio.tools/htrack> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3263,
@@ -242957,30 +248173,30 @@ HTrack (Household Tracking) is an application built in R-Shiny for use on encryp
 
 <https://bio.tools/htsanalyzer> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Gene expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ],
+            sc:additionalType "http://edamontology.org/data_2872" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "ID list" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2872" ;
-            sc:name "ID list" ;
-            sc:sameAs "http://edamontology.org/data_2872" ],
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Pathway or network" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ] ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Gene expression data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ],
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1669" ;
-            sc:name "P-value" ;
-            sc:sameAs "http://edamontology.org/data_1669" ],
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Plot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1669" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "P-value" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0085,
@@ -243004,7 +248220,7 @@ HTrack (Household Tracking) is an application built in R-Shiny for use on encryp
     biotools:primaryContact <http://orcid.org/0000-0002-5122-2418> .
 
 <https://bio.tools/htscluster> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0623,
         edam:topic_2269,
@@ -243022,8 +248238,30 @@ HTrack (Household Tracking) is an application built in R-Shiny for use on encryp
     sc:url "http://cran.r-project.org/web/packages/HTSCluster/index.html" ;
     biotools:primaryContact "Andrea Rau" .
 
+<https://bio.tools/htscodecs> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Desktop application" ;
+    sc:applicationSubCategory edam:topic_0196,
+        edam:topic_0749,
+        edam:topic_2269 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC010>,
+        "pmcid:PMC8896640",
+        "pubmed:34999766" ;
+    sc:description "Custom compression for CRAM and others." ;
+    sc:featureList edam:operation_0335,
+        edam:operation_3435,
+        edam:operation_3802 ;
+    sc:isAccessibleForFree true ;
+    sc:license "BSD-2-Clause" ;
+    sc:name "HTScodecs" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/samtools/htscodecs" .
+
 <https://bio.tools/htseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btu638> ;
@@ -243040,22 +248278,22 @@ HTrack (Household Tracking) is an application built in R-Shiny for use on encryp
 
 <https://bio.tools/htseqcount> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2305" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
+            sc:name "Sequence trace" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3168 ;
@@ -243074,7 +248312,7 @@ HTrack (Household Tracking) is an application built in R-Shiny for use on encryp
     biotools:primaryContact "Galaxy Support Team" .
 
 <https://bio.tools/htseqgenie> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:description "Libraries to perform NGS analysis." ;
@@ -243090,7 +248328,7 @@ HTrack (Household Tracking) is an application built in R-Shiny for use on encryp
     biotools:primaryContact "Jens Reeder" .
 
 <https://bio.tools/htseqqc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0632,
         edam:topic_2885,
@@ -243113,7 +248351,7 @@ The Open Science Workspace for Collaborative Data-driven Discovery.""" ;
     sc:url "https://reneshbedre.github.io/blog/htseqqc.html" .
 
 <https://bio.tools/htseqtools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3168,
@@ -243134,7 +248372,7 @@ The Open Science Workspace for Collaborative Data-driven Discovery.""" ;
     biotools:primaryContact "Oscar Reina" .
 
 <https://bio.tools/htsfilter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -243156,7 +248394,7 @@ The Open Science Workspace for Collaborative Data-driven Discovery.""" ;
     biotools:primaryContact "Andrea Rau" .
 
 <https://bio.tools/htsint> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0085,
         edam:topic_1775,
@@ -243174,38 +248412,22 @@ The Open Science Workspace for Collaborative Data-driven Discovery.""" ;
 
 <https://bio.tools/htslib> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ],
-        [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ],
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence variations" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ],
-        [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ] ;
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
+            sc:name "Sequence trace" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ],
-        [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ],
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
+            sc:name "Sequence trace" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ],
-        [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence variations" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1093/gigascience/giab007>,
@@ -243231,6 +248453,8 @@ The Open Science Workspace for Collaborative Data-driven Discovery.""" ;
         "1.13",
         "1.14",
         "1.15",
+        "1.15.1",
+        "1.16",
         "1.2",
         "1.2.1",
         "1.3",
@@ -243247,7 +248471,7 @@ The Open Science Workspace for Collaborative Data-driven Discovery.""" ;
     biotools:primaryContact "Wellcome Sanger Institute" .
 
 <https://bio.tools/htsmix> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3053,
@@ -243264,8 +248488,61 @@ The Open Science Workspace for Collaborative Data-driven Discovery.""" ;
     sc:url "http://www.stat.purdue.edu/~ovitek/HTSmix.html" ;
     biotools:primaryContact "Olga Vitek" .
 
+<https://bio.tools/htsplotter> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0625,
+        edam:topic_3343,
+        edam:topic_3373 ;
+    sc:citation <https://doi.org/10.1101/2021.09.06.459128> ;
+    sc:description "An end-to-end data processing, analysis and visualisation tool for chemical and genetic in vitro perturbation screening." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_2409,
+        edam:operation_3435 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "HTSplotter" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://htsplotter.cmgg.be/images/HTSplotterManual.pdf> ;
+    sc:url "https://htsplotter.cmgg.be/" .
+
+<https://bio.tools/htsqualc> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Sequence" ] ;
+    bsc:output [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_0951" ;
+            sc:name "Statistical estimate score" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_3070,
+        edam:topic_3168,
+        edam:topic_3572 ;
+    sc:citation <https://doi.org/10.1038/S41598-021-98124-3>,
+        "pmcid:PMC8455540",
+        "pubmed:34548573" ;
+    sc:description "HTSQualC is a flexible and one-step quality control software for high-throughput sequencing data analysis." ;
+    sc:featureList edam:operation_3192,
+        edam:operation_3218,
+        edam:operation_3695 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "HTSQualC" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/reneshbedre/HTSQualC" .
+
 <https://bio.tools/htssip> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_3127 ;
@@ -243280,8 +248557,25 @@ The Open Science Workspace for Collaborative Data-driven Discovery.""" ;
     sc:url "https://cran.r-project.org/web/packages/HTSSIP/index.html" ;
     biotools:primaryContact "Samuel Barnett" .
 
+<https://bio.tools/htstream> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0080,
+        edam:topic_0622,
+        edam:topic_0632,
+        edam:topic_3572 ;
+    sc:description "HTStream is a quality control and processing pipeline for High Throughput Sequencing data. The difference between HTStream and other tools is that HTStream uses a tab delimited fastq format that allows for streaming from application to application. This streaming creates some awesome efficiencies when processing HTS data and makes it fully interoperable with other standard Linux tools." ;
+    sc:featureList edam:operation_3187,
+        edam:operation_3192,
+        edam:operation_3219 ;
+    sc:license "Apache-2.0" ;
+    sc:name "HTStream" ;
+    sc:softwareHelp <https://s4hts.github.io/HTStream/> ;
+    sc:softwareVersion "1.3.3" ;
+    sc:url "https://s4hts.github.io/HTStream/" .
+
 <https://bio.tools/htsvi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2259,
@@ -243299,7 +248593,7 @@ The Open Science Workspace for Collaborative Data-driven Discovery.""" ;
     biotools:primaryContact "M. Boutros" .
 
 <https://bio.tools/htsvis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0154,
@@ -243318,7 +248612,7 @@ The Open Science Workspace for Collaborative Data-driven Discovery.""" ;
     biotools:primaryContact "Michael Boutros" .
 
 <https://bio.tools/httmm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0637,
         edam:topic_3293,
@@ -243335,7 +248629,7 @@ The Open Science Workspace for Collaborative Data-driven Discovery.""" ;
     biotools:primaryContact "Shihua Zhang" .
 
 <https://bio.tools/hu-mab> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0199,
@@ -243351,8 +248645,32 @@ The Open Science Workspace for Collaborative Data-driven Discovery.""" ;
     sc:name "Hu-mAb" ;
     sc:url "http://opig.stats.ox.ac.uk/webapps/humab" .
 
+<https://bio.tools/huardb> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0634,
+        edam:topic_0769,
+        edam:topic_2830,
+        edam:topic_3170,
+        edam:topic_3308 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAB857>,
+        "pmcid:PMC8728177",
+        "pubmed:34606616" ;
+    sc:description "Human Antigen Receptor Consortium (huARdb) is a comprehensive database of single cell immune profiling and V(D)J T cell and B cell analysis, enhanced with advanced visualization of single-cell data." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_0337,
+        edam:operation_0451,
+        edam:operation_3431,
+        edam:operation_3891 ;
+    sc:isAccessibleForFree true ;
+    sc:name "huARdb" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://huarc.net/database" .
+
 <https://bio.tools/hubba> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0602,
@@ -243377,8 +248695,51 @@ The Open Science Workspace for Collaborative Data-driven Discovery.""" ;
         "Hsin-Hung Wu",
         "Shu-Hwa Chen" .
 
+<https://bio.tools/hubdesign> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0632,
+        edam:topic_0637,
+        edam:topic_3168,
+        edam:topic_3174,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.1016/J.CRMETH.2021.100069>,
+        "pmcid:PMC9017208",
+        "pubmed:35474894" ;
+    sc:description "Probe design for simultaneous, targeted capture of diverse metagenomic targets." ;
+    sc:featureList edam:operation_2419,
+        edam:operation_3695,
+        edam:operation_3745 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Other" ;
+    sc:name "HUBDesign" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/zacherydickson/HUBDesign" .
+
+<https://bio.tools/hubipred> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0601,
+        edam:topic_2815,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1039/D0MO00183J>,
+        "pubmed:34515266" ;
+    sc:description "An ensemble predictor for human ubiquitination sites using convolutional and recurrent neural networks" ;
+    sc:featureList edam:operation_0417,
+        edam:operation_3927 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "HUbiPred" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/amituofo-xf/HUbiPred" .
+
 <https://bio.tools/hubmed> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0218,
         edam:topic_3068,
@@ -243397,7 +248758,7 @@ The Open Science Workspace for Collaborative Data-driven Discovery.""" ;
     sc:url "http://www.hubmed.org/" .
 
 <https://bio.tools/hubviz> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0218,
@@ -243415,7 +248776,7 @@ hubViz (a novel tool for hub-centric Visualization) is a novel tool for hub-cent
     sc:url "https://dongjunchung.github.io/hubviz/" .
 
 <https://bio.tools/hudsen> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_3065 ;
     sc:citation <https://doi.org/10.1111/j.1469-7580.2010.01290.x>,
@@ -243430,8 +248791,28 @@ hubViz (a novel tool for hub-centric Visualization) is a novel tool for hub-cent
     sc:softwareHelp <http://hudsen.eu/about/> ;
     sc:url "http://www.hudsen.org/" .
 
+<https://bio.tools/hudson> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_2885,
+        edam:topic_3298,
+        edam:topic_3382,
+        edam:topic_3517 ;
+    sc:citation <https://doi.org/10.1101/2022.01.25.474274> ;
+    sc:description "An R package for creating mirrored Manhattan plots" ;
+    sc:featureList edam:operation_0224,
+        edam:operation_0337,
+        edam:operation_3778 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "hudson" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/RitchieLab/hudson" .
+
 <https://bio.tools/huf-zinc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0121,
@@ -243449,14 +248830,13 @@ hubViz (a novel tool for hub-centric Visualization) is a novel tool for hub-cent
 
 <https://bio.tools/huge> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2393" ;
-            sc:name "mFLJ/mKIAA number" ;
-            sc:sameAs "http://edamontology.org/data_2393" ] ;
+            sc:additionalType "http://edamontology.org/data_2393" ;
+            sc:name "mFLJ/mKIAA number" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0896" ;
-            sc:name "Protein report" ;
-            sc:sameAs "http://edamontology.org/data_0896" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0896" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Protein report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_2815,
         edam:topic_3512 ;
@@ -243470,8 +248850,27 @@ hubViz (a novel tool for hub-centric Visualization) is a novel tool for hub-cent
     sc:softwareHelp <http://www.kazusa.or.jp/huge/description.html> ;
     sc:url "http://www.kazusa.or.jp/huge/" .
 
+<https://bio.tools/hugfan> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workbench" ;
+    sc:applicationSubCategory edam:topic_0121,
+        edam:topic_0602,
+        edam:topic_3179,
+        edam:topic_3474,
+        edam:topic_3957 ;
+    sc:citation <https://doi.org/10.1093/BIB/BBAB552>,
+        "pubmed:35021191" ;
+    sc:description "Reconstruction of human protein-coding gene functional association network based on machine learning." ;
+    sc:featureList edam:operation_0533,
+        edam:operation_2436,
+        edam:operation_3094 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "HuGFAN" ;
+    sc:url "https://github.com/xthuang226/HuGFAN" .
+
 <https://bio.tools/human-disease-genes> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0634,
@@ -243488,7 +248887,7 @@ Collect information about clinic management and research projects.""" ;
     sc:url "http://www.humandiseasegenes.info" .
 
 <https://bio.tools/human-ires-atlas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0203,
@@ -243507,7 +248906,7 @@ Collect information about clinic management and research projects.""" ;
     biotools:primaryContact <https://orcid.org/0000-0001-9420-196X> .
 
 <https://bio.tools/human-phenotype-ontology> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0625,
@@ -243522,8 +248921,55 @@ Collect information about clinic management and research projects.""" ;
     sc:name "Human Phenotype Ontology" ;
     sc:url "http://www.human-phenotype-ontology.org" .
 
+<https://bio.tools/human-virus_ppis> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0108,
+        edam:topic_0128,
+        edam:topic_2229,
+        edam:topic_3324,
+        edam:topic_3957 ;
+    sc:citation <https://doi.org/10.1016/J.CSBJ.2022.03.002>,
+        "pmcid:PMC8924640",
+        "pubmed:35356543" ;
+    sc:description "Comprehensive characterization of human-virus protein-protein interactions reveals disease comorbidities and potential antiviral drugs." ;
+    sc:featureList edam:operation_0306,
+        edam:operation_2436,
+        edam:operation_2949,
+        edam:operation_3927 ;
+    sc:isAccessibleForFree true ;
+    sc:name "human-virus PPIs" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://bio-bigdata.hrbmu.edu.cn/HVPPI" .
+
+<https://bio.tools/human_eye_transcriptome_atlas> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1026" ;
+            sc:name "Gene symbol" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0634,
+        edam:topic_2815,
+        edam:topic_3170,
+        edam:topic_3308,
+        edam:topic_3337 ;
+    sc:citation <https://doi.org/10.1016/j.ygeno.2022.110286>,
+        "pubmed:35124170" ;
+    sc:description "A Searchable Comparative Transcriptome Database for Healthy and Diseased Human Eye Tissue." ;
+    sc:featureList edam:operation_2422,
+        edam:operation_3223,
+        edam:operation_3435 ;
+    sc:isAccessibleForFree true ;
+    sc:name "Human Eye Transcriptome Atlas" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://www.eye-transcriptome.com" .
+
 <https://bio.tools/human_splicing_finder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_3063,
@@ -243545,13 +248991,8 @@ Collect information about clinic management and research projects.""" ;
     sc:url "http://www.umd.be/HSF3/" ;
     biotools:primaryContact "Contact Form" .
 
-<https://bio.tools/human_whole_genome_pacbio_smrt_sequencing> a sc:SoftwareApplication ;
-    sc:description "CD Genomics has been providing the accurate and affordable human genome resequencing service for a couple of years. CD Genomics introduces previously hidden PacBio SMRT technology that has great application potential in human genome resequencing. The long single-molecule reads reveal structural variants and produce direct variant phasing information across haplotype blocks and methylation. This is very helpful to broaden the utility of precision medicine efforts to improve human health, and greatly promote the development of human single-gene diseases, complex diseases and tumor genomes." ;
-    sc:name "Human Whole Genome PacBio SMRT Sequencing" ;
-    sc:url "https://www.cd-genomics.com/Human-Whole-Genome-PacBio-SMRT-Sequencing.html" .
-
 <https://bio.tools/humanmetagenomedb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_3174,
         edam:topic_3277,
@@ -243569,15 +249010,39 @@ Metagenomics became a standard strategy to comprehend the functional potential o
     sc:url "https://webapp.ufz.de/hmgdb/" .
 
 <https://bio.tools/humann2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:citation <https://doi.org/10.1038/s41592-018-0176-y> ;
     sc:description "HUMAnN 2.0 is a pipeline for efficiently and accurately profiling the presence/absence and abundance of microbial pathways in a community from metagenomic or metatranscriptomic sequencing data (typically millions of short DNA/RNA reads). This process, referred to as functional profiling, aims to describe the metabolic potential of a microbial community and its members. More generally, functional profiling answers the question “What are the microbes in my community-of-interest doing (or capable of doing)?”" ;
     sc:featureList edam:operation_3929 ;
     sc:name "HUMAnN2" ;
     sc:url "http://huttenhower.sph.harvard.edu/humann2" .
 
+<https://bio.tools/humannet> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0128,
+        edam:topic_0634,
+        edam:topic_3053,
+        edam:topic_3318,
+        edam:topic_3517 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAB1048>,
+        "pmcid:PMC8728227",
+        "pubmed:34747468" ;
+    sc:description "An improved database of human gene networks for disease research." ;
+    sc:featureList edam:operation_2421,
+        edam:operation_2454,
+        edam:operation_3094 ;
+    sc:isAccessibleForFree true ;
+    sc:license "CC-BY-NC-SA-4.0" ;
+    sc:name "HumanNet" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareVersion "3" ;
+    sc:url "https://www.inetbio.org/humannet/" .
+
 <https://bio.tools/humir> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0091,
@@ -243599,7 +249064,7 @@ The Chair for Clinical Bioinformatics at Saarland University has developed numer
     sc:url "https://www.ccb.uni-saarland.de/humir/" .
 
 <https://bio.tools/hummingbird> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0769,
@@ -243617,7 +249082,7 @@ The Chair for Clinical Bioinformatics at Saarland University has developed numer
         "Michael P Snyder" .
 
 <https://bio.tools/humos> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -243638,7 +249103,7 @@ The Chair for Clinical Bioinformatics at Saarland University has developed numer
     biotools:primaryContact <https://orcid.org/0000-0003-0785-2903> .
 
 <https://bio.tools/hunflair> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0218,
         edam:topic_0769,
@@ -243657,7 +249122,7 @@ A powerful NLP library. Flair allows you to apply our state-of-the-art natural l
     sc:url "https://github.com/flairNLP/flair" .
 
 <https://bio.tools/hungarian-algorithm-linear-sum-assignment-problem> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:description "Hungarian algorithm for linear sum assignment. Works for square and rectangular cost matrices." ;
     sc:isAccessibleForFree true ;
@@ -243670,7 +249135,7 @@ A powerful NLP library. Flair allows you to apply our state-of-the-art natural l
     biotools:primaryContact "ondrejdee" .
 
 <https://bio.tools/hupho> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0821,
@@ -243696,7 +249161,7 @@ A powerful NLP library. Flair allows you to apply our state-of-the-art natural l
     biotools:primaryContact <https://orcid.org/0000-0002-9528-6018> .
 
 <https://bio.tools/huskindb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3047,
@@ -243718,7 +249183,7 @@ huskinDB is a human skin permeation database containing information on experimen
     sc:url "https://huskindb.drug-design.de" .
 
 <https://bio.tools/hvf_extraction_script> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2815,
@@ -243737,7 +249202,7 @@ huskinDB is a human skin permeation database containing information on experimen
     biotools:primaryContact "Ying Han" .
 
 <https://bio.tools/hvidb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0203,
@@ -243756,8 +249221,28 @@ Here, we introduce a comprehensive human-virus PPI database, HVIDB (http://zzdla
     sc:name "HVIDB" ;
     sc:url "http://zzdlab.com/hvidb/" .
 
+<https://bio.tools/hwep> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0625,
+        edam:topic_0769,
+        edam:topic_2269 ;
+    sc:citation <https://doi.org/10.1101/2021.09.24.461731> ;
+    sc:description "Inference concerning equilibrium and random mating in autopolyploids. Methods are available to test for equilibrium and random mating at any even ploidy level (>2) in the presence of double reduction at biallelic loci. For autopolyploid populations in equilibrium, methods are available to estimate the degree of double reduction. We also provide functions to calculate genotype frequencies at equilibrium, or after one or several rounds of random mating, given rates of double reduction." ;
+    sc:featureList edam:operation_0487,
+        edam:operation_2238,
+        edam:operation_3196 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "hwep" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://cloud.r-project.org/web/packages/hwep/hwep.pdf> ;
+    sc:url "https://github.com/dcgerard/hwep" .
+
 <https://bio.tools/hwetest> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3315,
         edam:topic_3374 ;
@@ -243773,18 +249258,18 @@ Here, we introduce a comprehensive human-virus PPI database, HVIDB (http://zzdla
 
 <https://bio.tools/hx-express> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3245" ;
+            sc:name "Mass spectrometry spectra" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ],
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Plot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1537" ;
-            sc:name "Protein structure report" ;
-            sc:sameAs "http://edamontology.org/data_1537" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1537" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Protein structure report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -243806,8 +249291,43 @@ Here, we introduce a comprehensive human-virus PPI database, HVIDB (http://zzdla
     sc:url "http://www.hxms.com/HXExpress/" ;
     biotools:primaryContact "J Engen" .
 
+<https://bio.tools/hyb> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script",
+        "Workflow" ;
+    sc:applicationSubCategory edam:topic_0114,
+        edam:topic_0769 ;
+    sc:citation <https://doi.org/10.1016/j.ymeth.2013.10.015> ;
+    sc:description "hyb is a bioinformatics pipeline for analysis of CLASH (crosslinking, ligation and sequencing of hybrids) data." ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "hyb" ;
+    sc:url "https://github.com/gkudla/hyb" ;
+    biotools:primaryContact "Grzegorz Kudla" .
+
+<https://bio.tools/hyb4mc> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0654,
+        edam:topic_0798,
+        edam:topic_3168,
+        edam:topic_3295,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1186/S12859-022-04789-6>,
+        "pmcid:PMC9241225",
+        "pubmed:35768759" ;
+    sc:description "A hybrid DNA2vec-based model for DNA N4-methylcytosine sites prediction." ;
+    sc:featureList edam:operation_3927 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "Hyb4mC" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/YingLiangjxau/Hyb4mC" .
+
 <https://bio.tools/hybphaser> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
@@ -243823,8 +249343,32 @@ Here, we introduce a comprehensive human-virus PPI database, HVIDB (http://zzdla
     sc:name "HybPhaser" ;
     sc:url "https://github.com/LarsNauheimer/HybPhaser" .
 
+<https://bio.tools/hybpiper-rbgv> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0194,
+        edam:topic_0196,
+        edam:topic_3293,
+        edam:topic_3316,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.1101/2021.11.08.467817> ;
+    sc:description "Containerization and additional options for assembly and paralog detection in target enrichment data." ;
+    sc:featureList edam:operation_0310,
+        edam:operation_0335,
+        edam:operation_3192,
+        edam:operation_3478 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "hybpiper-rbgv" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://github.com/mossmatters/HybPiper/wiki/Introns>,
+        <https://github.com/mossmatters/HybPiper/wiki/Paralogs> ;
+    sc:url "https://github.com/chrisjackson-pellicle/HybPiper-RBGV" .
+
 <https://bio.tools/hybrid-denovo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_3168,
@@ -243842,7 +249386,7 @@ Here, we introduce a comprehensive human-virus PPI database, HVIDB (http://zzdla
         "Support" .
 
 <https://bio.tools/hybrid-shrec> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3168,
@@ -243857,7 +249401,7 @@ Here, we introduce a comprehensive human-virus PPI database, HVIDB (http://zzdla
     biotools:primaryContact "Leena Salmela" .
 
 <https://bio.tools/hybrid-skin-lesion-segmentation> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3382,
@@ -243876,7 +249420,7 @@ Here, we introduce a comprehensive human-virus PPI database, HVIDB (http://zzdla
     biotools:primaryContact "Tyler Coye" .
 
 <https://bio.tools/hybrid_mm_cg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0176,
@@ -243897,7 +249441,7 @@ Automatic set up of Molecular Mechanics/Coarse-Grained (MM/CG) simulations for h
     sc:url "http://mmcg.grs.kfa-juelich.de" .
 
 <https://bio.tools/hybridcheck> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0092,
@@ -243919,7 +249463,7 @@ Automatic set up of Molecular Mechanics/Coarse-Grained (MM/CG) simulations for h
         "Dr. Cock van Oosterhout" .
 
 <https://bio.tools/hybridmine> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0622,
@@ -243938,7 +249482,7 @@ Fast and accurate parental allele inheritance prediction tool for hybrid species
     sc:url "https://github.com/Sookie-S/HybridMine" .
 
 <https://bio.tools/hybridmtest> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2269,
@@ -243957,7 +249501,7 @@ Fast and accurate parental allele inheritance prediction tool for hybrid species
     biotools:primaryContact "Demba Fofana" .
 
 <https://bio.tools/hybridpbrpred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0128,
@@ -243977,7 +249521,7 @@ HybridPBRpred combines prediction of protein-binding residues generated by SCRIB
     sc:url "http://biomine.cs.vcu.edu/servers/hybridPBRpred/" .
 
 <https://bio.tools/hybridsucc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0154,
@@ -243998,7 +249542,7 @@ a hybrid-learning architecture for succinylation site prediction.""" ;
     sc:url "http://hybridsucc.biocuckoo.org/" .
 
 <https://bio.tools/hybridvel> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3318,
@@ -244017,7 +249561,7 @@ a hybrid-learning architecture for succinylation site prediction.""" ;
     biotools:primaryContact "Pratik Chhatbar" .
 
 <https://bio.tools/hybtrack> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0176,
@@ -244034,7 +249578,7 @@ a hybrid-learning architecture for succinylation site prediction.""" ;
     biotools:primaryContact "Byung Hun Lee" .
 
 <https://bio.tools/hycud> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0736,
@@ -244053,14 +249597,12 @@ a hybrid-learning architecture for succinylation site prediction.""" ;
 
 <https://bio.tools/hyddb> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1233" ;
-            sc:name "Sequence set (protein)" ;
-            sc:sameAs "http://edamontology.org/data_1233" ] ;
+            sc:additionalType "http://edamontology.org/data_1233" ;
+            sc:name "Sequence set (protein)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:name "Sequence features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1038/srep34212>,
@@ -244078,7 +249620,7 @@ a hybrid-learning architecture for succinylation site prediction.""" ;
     biotools:primaryContact "Dan Søndergaard" .
 
 <https://bio.tools/hyden> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0632,
@@ -244097,7 +249639,7 @@ a hybrid-learning architecture for succinylation site prediction.""" ;
         "Ron Shamir" .
 
 <https://bio.tools/hydpred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3510,
@@ -244115,7 +249657,7 @@ a hybrid-learning architecture for succinylation site prediction.""" ;
     biotools:primaryContact "Shuyan Li" .
 
 <https://bio.tools/hydra> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3053,
@@ -244132,7 +249674,7 @@ a hybrid-learning architecture for succinylation site prediction.""" ;
     biotools:primaryContact "Minji Kim" .
 
 <https://bio.tools/hydra-protein> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0130,
         edam:topic_0154,
         edam:topic_0593,
@@ -244151,7 +249693,7 @@ a hybrid-learning architecture for succinylation site prediction.""" ;
     sc:url "http://www.csbio.sjtu.edu.cn/bioinf/HYDRA/" .
 
 <https://bio.tools/hydra_bnpy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -244175,7 +249717,7 @@ There is a need for more flexible gene expression analyses for precision oncolog
     sc:url "http://www.github.com/jpfeil/hydra" .
 
 <https://bio.tools/hydra_sv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0622,
@@ -244192,7 +249734,7 @@ There is a need for more flexible gene expression analyses for precision oncolog
     sc:url "http://cphg.virginia.edu/quinlan/?page_id=30" .
 
 <https://bio.tools/hydramap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2275,
         edam:topic_3047,
@@ -244218,14 +249760,14 @@ We developed an empirical method for predicting the favorable hydration sites in
 
 <https://bio.tools/hydrogen_bondifier> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ] ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein structure" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1546" ;
-            sc:name "Protein distance matrix" ;
-            sc:sameAs "http://edamontology.org/data_1546" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1546" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Protein distance matrix" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -244240,7 +249782,7 @@ We developed an empirical method for predicting the favorable hydration sites in
     sc:url "https://github.com/jtprince/hydrogen_bondifier" .
 
 <https://bio.tools/hydrogen_bonding_does> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0203,
@@ -244258,7 +249800,7 @@ Codon usage bias exerts control over a wide variety of molecular processes. The
     sc:url "https://juanvillada.shinyapps.io/hbonds/" .
 
 <https://bio.tools/hydrophobicity> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3307 ;
@@ -244272,8 +249814,26 @@ Codon usage bias exerts control over a wide variety of molecular processes. The
     sc:softwareHelp <http://virology.uvic.ca/help/tool-help/how-to/hydrophobicity-grapher-how-to/> ;
     sc:url "http://athena.bioc.uvic.ca/virology-ca-tools/hydrophobicity/" .
 
+<https://bio.tools/hyfactor> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_3068,
+        edam:topic_3365 ;
+    sc:citation <https://doi.org/10.1021/ACS.JCIM.2C00744>,
+        "pubmed:35876159" ;
+    sc:description "A open-source architecture which is inspired by previously reported DEFactor architecture and based on hydrogen labeled graphs." ;
+    sc:featureList edam:operation_2428 ;
+    sc:isAccessibleForFree true ;
+    sc:license "LGPL-3.0" ;
+    sc:name "HyFactor" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/Laboratoire-de-Chemoinformatique/HyFactor" .
+
 <https://bio.tools/hyfi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654 ;
     sc:description "Identifies primer and microarray probe binding sites in genomic DNA." ;
@@ -244285,8 +249845,28 @@ Codon usage bias exerts control over a wide variety of molecular processes. The
     sc:softwareHelp <http://hyfi.sourceforge.net/hyfi.html> ;
     sc:url "http://hyfi.sourceforge.net/" .
 
+<https://bio.tools/hyindel> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0196,
+        edam:topic_0199,
+        edam:topic_2640,
+        edam:topic_3168 ;
+    sc:citation <https://doi.org/10.1101/2021.10.08.463662> ;
+    sc:description "A Hybrid approach for Detection of Insertions and Deletions." ;
+    sc:featureList edam:operation_0452,
+        edam:operation_3199,
+        edam:operation_3962 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "HyINDEL" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/alok123t/HyINDEL" .
+
 <https://bio.tools/hylength> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0625,
@@ -244304,7 +249884,7 @@ HyLength: a semi-automated digital image analysis pipeline to measure total fung
     sc:url "https://gitlab.iit.it/EDelDottore/hylength" .
 
 <https://bio.tools/hymm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0634,
@@ -244318,8 +249898,31 @@ HyLength: a semi-automated digital image analysis pipeline to measure total fung
     sc:url "https://github.com/xiangju0208/HyMM" ;
     biotools:primaryContact "Min Li" .
 
+<https://bio.tools/hypdb> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0080,
+        edam:topic_0121,
+        edam:topic_0128,
+        edam:topic_0601,
+        edam:topic_3520 ;
+    sc:citation <https://doi.org/10.1101/2022.01.12.474993> ;
+    sc:description "Deep Proteome Profiling Enabled Functional Annotation and Data-Independent Quantification of Proline Hydroxylation Targets." ;
+    sc:featureList edam:operation_0306,
+        edam:operation_0314,
+        edam:operation_0417,
+        edam:operation_2949,
+        edam:operation_3799 ;
+    sc:isAccessibleForFree true ;
+    sc:name "HypDB" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://www.HypDB.site" .
+
 <https://bio.tools/hype> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0202,
@@ -244339,7 +249942,7 @@ HyLength: a semi-automated digital image analysis pipeline to measure total fung
     biotools:primaryContact "Dr. Vineet K. Sharma" .
 
 <https://bio.tools/hypeR> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0769 ;
@@ -244353,7 +249956,7 @@ HyLength: a semi-automated digital image analysis pipeline to measure total fung
     sc:url "https://github.com/montilab/hypeR" .
 
 <https://bio.tools/hyper-testing> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3168,
@@ -244370,7 +249973,7 @@ HyLength: a semi-automated digital image analysis pipeline to measure total fung
         "Xihong Lin" .
 
 <https://bio.tools/hyperbeta> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0176,
@@ -244390,8 +249993,25 @@ HyLength: a semi-automated digital image analysis pipeline to measure total fung
     biotools:primaryContact "Daniela Besozzi",
         "Fabrizio Gelain" .
 
+<https://bio.tools/hyperchip> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_2640,
+        edam:topic_3169,
+        edam:topic_3295 ;
+    sc:citation <https://doi.org/10.1186/S13059-022-02627-9>,
+        "pmcid:PMC8883642",
+        "pubmed:35227282" ;
+    sc:description "HyperChIP for calling hypervariable ChIP-seq signals across samples" ;
+    sc:featureList edam:operation_2939,
+        edam:operation_3222,
+        edam:operation_3435 ;
+    sc:license "GPL-3.0" ;
+    sc:name "HyperChIP" ;
+    sc:url "https://github.com/tushiqi/MAnorm2" .
+
 <https://bio.tools/hypercldb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3077,
         edam:topic_3340 ;
@@ -244422,7 +250042,7 @@ HyLength: a semi-automated digital image analysis pipeline to measure total fung
         "Maria Assunta Manniello" .
 
 <https://bio.tools/hypercluster> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_2640,
@@ -244442,7 +250062,7 @@ Example jupyter notebooks for hypercluster.""" ;
     sc:url "https://github.com/ruggleslab/hypercluster" .
 
 <https://bio.tools/hyperdraw> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0092 ;
@@ -244459,16 +250079,33 @@ Example jupyter notebooks for hypercluster.""" ;
     sc:url "http://bioconductor.org/packages/release/bioc/html/hyperdraw.html" ;
     biotools:primaryContact "Paul Murrell" .
 
+<https://bio.tools/hyperex> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0632,
+        edam:topic_0659,
+        edam:topic_2229,
+        edam:topic_3168,
+        edam:topic_3293 ;
+    sc:citation <https://doi.org/10.1101/2021.09.03.455391> ;
+    sc:description "HyperEx (pronounced \"Hyper Ex\" for Hypervariable region Extractor) is a tool that extracts 16S ribosomal RNA (rRNA) hypervariable region based on a set of primers." ;
+    sc:featureList edam:operation_0491 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "HyperEx" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/Ebedthan/hyperex" .
+
 <https://bio.tools/hypergeny> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0850" ;
-            sc:name "Sequence set" ;
-            sc:sameAs "http://edamontology.org/data_0850" ] ;
+            sc:additionalType "http://edamontology.org/data_0850" ;
+            sc:name "Sequence set" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0872" ;
-            sc:name "Phylogenetic tree" ;
-            sc:sameAs "http://edamontology.org/data_0872" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0872" ;
+            sc:name "Phylogenetic tree" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application",
         "Web application" ;
@@ -244486,7 +250123,7 @@ Example jupyter notebooks for hypercluster.""" ;
     sc:url "http://bioinformatics.psb.ugent.be/software/details/HyperGeny" .
 
 <https://bio.tools/hypergeometric-cummulative-distribution-permutation-testing> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3053 ;
@@ -244501,7 +250138,7 @@ Example jupyter notebooks for hypercluster.""" ;
     biotools:primaryContact "Michael Boedigheimer" .
 
 <https://bio.tools/hypergraph> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0092 ;
@@ -244519,7 +250156,7 @@ Example jupyter notebooks for hypercluster.""" ;
     biotools:primaryContact "BioConductor Package Maintainer" .
 
 <https://bio.tools/hyperlasso> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0622,
@@ -244540,7 +250177,7 @@ Example jupyter notebooks for hypercluster.""" ;
     sc:url "http://www.ebi.ac.uk/projects/BARGEN/" .
 
 <https://bio.tools/hyperpolarized-mri-toolbox> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3304,
@@ -244556,7 +250193,7 @@ Example jupyter notebooks for hypercluster.""" ;
     biotools:primaryContact "Peder Larson" .
 
 <https://bio.tools/hyperprior> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0622,
@@ -244573,7 +250210,7 @@ Example jupyter notebooks for hypercluster.""" ;
     biotools:primaryContact "Rui Kuang" .
 
 <https://bio.tools/hyperquant> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -244592,8 +250229,32 @@ HyperQuant A Pipeline for integrating identification and quantitation results fo
     sc:name "HyperQuant" ;
     sc:url "https://sourceforge.net/projects/hyper-quant/files/" .
 
+<https://bio.tools/hyperseed> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Desktop application" ;
+    sc:applicationSubCategory edam:topic_0769,
+        edam:topic_0780,
+        edam:topic_3382,
+        edam:topic_3474,
+        edam:topic_3810 ;
+    sc:citation <https://doi.org/10.3390/S21248184>,
+        "pmcid:PMC8703337",
+        "pubmed:34960287" ;
+    sc:description "High-throughput, nondestructive, and precise measurement of seeds is critical for the evaluation of seed quality and the improvement of agricultural productions." ;
+    sc:featureList edam:operation_3214,
+        edam:operation_3443,
+        edam:operation_3891,
+        edam:operation_3927 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "HyperSeed" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/tgaochn/HyperSeed" .
+
 <https://bio.tools/hyperspectral-cars-image-analysis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -244611,7 +250272,7 @@ HyperQuant A Pipeline for integrating identification and quantitation results fo
     biotools:primaryContact "Rajeev Yadav" .
 
 <https://bio.tools/hypertree> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3293 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/16.7.660>,
@@ -244626,24 +250287,45 @@ HyperQuant A Pipeline for integrating identification and quantitation results fo
     sc:softwareVersion "1.2.2" ;
     sc:url "http://kinase.com/tools/HyperTree.html" .
 
+<https://bio.tools/hypertriber> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0099,
+        edam:topic_0203,
+        edam:topic_0780,
+        edam:topic_3170 ;
+    sc:citation <https://doi.org/10.1101/2021.10.20.465108> ;
+    sc:description "A flexible R package for the analysis of differential RNA editing." ;
+    sc:featureList edam:operation_3096,
+        edam:operation_3901,
+        edam:operation_3902 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "hyperTRIBER" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/sarah-ku/hyperTRIBER" .
+
 <https://bio.tools/hypo> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:name "Nucleic acid sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
-    sc:applicationSubCategory edam:topic_0196 ;
+    sc:applicationSubCategory edam:topic_0196,
+        edam:topic_0622 ;
     sc:citation <https://doi.org/10.1101/2019.12.19.882506> ;
     sc:description "HyPo, a Hybrid Polisher, utilizes short as well as long reads within a single run to polish a long reads assembly of small and large genomes." ;
-    sc:featureList edam:operation_2425 ;
+    sc:featureList edam:operation_0525,
+        edam:operation_2425 ;
     sc:license "GPL-3.0" ;
     sc:name "HyPo" ;
     sc:softwareVersion "1.0.3" ;
     sc:url "https://github.com/kensung-lab/hypo" .
 
 <https://bio.tools/hypocotyl-UNet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0780,
@@ -244664,7 +250346,7 @@ HyperQuant A Pipeline for integrating identification and quantitation results fo
         "Tivadar Danka" .
 
 <https://bio.tools/hypoxiadb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0219 ;
@@ -244683,14 +250365,14 @@ HyperQuant A Pipeline for integrating identification and quantitation results fo
 
 <https://bio.tools/hysp> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3483" ;
-            sc:name "Spectrum" ;
-            sc:sameAs "http://edamontology.org/data_3483" ] ;
+            sc:additionalType "http://edamontology.org/data_3483" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Spectrum" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Image" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3321,
         edam:topic_3382,
@@ -244709,7 +250391,7 @@ HyperQuant A Pipeline for integrating identification and quantitation results fo
     sc:url "http://bioimaging.usc.edu/software.html" .
 
 <https://bio.tools/hystorian> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0632,
         edam:topic_0769,
@@ -244727,7 +250409,7 @@ HyperQuant A Pipeline for integrating identification and quantitation results fo
     sc:url "https://gitlab.unige.ch/paruch-group/hystorian" .
 
 <https://bio.tools/hzanalyzer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2885,
@@ -244746,7 +250428,7 @@ HyperQuant A Pipeline for integrating identification and quantitation results fo
     biotools:primaryContact "Tatsuhiko Tsunoda" .
 
 <https://bio.tools/i-abacus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_2640,
@@ -244765,14 +250447,12 @@ HyperQuant A Pipeline for integrating identification and quantitation results fo
 
 <https://bio.tools/i-adhore> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1234" ;
-            sc:name "Sequence set (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1234" ] ;
+            sc:additionalType "http://edamontology.org/data_1234" ;
+            sc:name "Sequence set (nucleic acid)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0868" ;
-            sc:name "Profile-profile alignment" ;
-            sc:sameAs "http://edamontology.org/data_0868" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0868" ;
+            sc:name "Profile-profile alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0797 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btm449> ;
@@ -244788,7 +250468,7 @@ HyperQuant A Pipeline for integrating identification and quantitation results fo
     sc:url "http://bioinformatics.psb.ugent.be/software/details/i--ADHoRe" .
 
 <https://bio.tools/i-gsea4gwas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0602,
@@ -244809,7 +250489,7 @@ HyperQuant A Pipeline for integrating identification and quantitation results fo
     biotools:primaryContact "i-GSEA4GWAS Support" .
 
 <https://bio.tools/i-lbr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -244827,30 +250507,27 @@ Information embedded in ligand-binding residues (LBRs) of proteins is important
 
 <https://bio.tools/i-mutant> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2974" ;
-            sc:name "Protein sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_2974" ],
+            sc:additionalType "http://edamontology.org/data_1127" ;
+            sc:name "PDB ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1467" ;
-            sc:name "Protein chain" ;
-            sc:sameAs "http://edamontology.org/data_1467" ],
+            sc:additionalType "http://edamontology.org/data_1742" ;
+            sc:name "PDB residue number" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1742" ;
-            sc:name "PDB residue number" ;
-            sc:sameAs "http://edamontology.org/data_1742" ],
+            sc:additionalType "http://edamontology.org/data_1467" ;
+            sc:name "Protein chain" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1127" ;
-            sc:name "PDB ID" ;
-            sc:sameAs "http://edamontology.org/data_1127" ] ;
+            sc:additionalType "http://edamontology.org/data_2974" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence (raw)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1537" ;
-            sc:name "Protein structure report" ;
-            sc:sameAs "http://edamontology.org/data_1537" ],
+            sc:additionalType "http://edamontology.org/data_1537" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Protein structure report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1537" ;
-            sc:name "Protein structure report" ;
-            sc:sameAs "http://edamontology.org/data_1537" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1537" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Protein structure report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0130,
         edam:topic_2885 ;
@@ -244869,38 +250546,35 @@ Information embedded in ligand-binding residues (LBRs) of proteins is important
 
 <https://bio.tools/i-mutant_suite> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2974" ;
-            sc:name "Protein sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_2974" ],
+            sc:additionalType "http://edamontology.org/data_1742" ;
+            sc:name "PDB residue number" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2974" ;
-            sc:name "Protein sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_2974" ],
+            sc:additionalType "http://edamontology.org/data_1127" ;
+            sc:name "PDB ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1467" ;
-            sc:name "Protein chain" ;
-            sc:sameAs "http://edamontology.org/data_1467" ],
+            sc:additionalType "http://edamontology.org/data_2974" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence (raw)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1742" ;
-            sc:name "PDB residue number" ;
-            sc:sameAs "http://edamontology.org/data_1742" ],
+            sc:additionalType "http://edamontology.org/data_2974" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence (raw)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1127" ;
-            sc:name "PDB ID" ;
-            sc:sameAs "http://edamontology.org/data_1127" ] ;
+            sc:additionalType "http://edamontology.org/data_1467" ;
+            sc:name "Protein chain" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1537" ;
-            sc:name "Protein structure report" ;
-            sc:sameAs "http://edamontology.org/data_1537" ],
+            sc:additionalType "http://edamontology.org/data_1622" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Disease report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1622" ;
-            sc:name "Disease report" ;
-            sc:sameAs "http://edamontology.org/data_1622" ],
+            sc:additionalType "http://edamontology.org/data_1537" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Protein structure report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1537" ;
-            sc:name "Protein structure report" ;
-            sc:sameAs "http://edamontology.org/data_1537" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1537" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Protein structure report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -244923,7 +250597,7 @@ Information embedded in ligand-binding residues (LBRs) of proteins is important
     biotools:primaryContact "Emidio Capriotti" .
 
 <https://bio.tools/i-pv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0092,
@@ -244941,7 +250615,7 @@ Information embedded in ligand-binding residues (LBRs) of proteins is important
     biotools:primaryContact "Ibrahim Tanyalcin" .
 
 <https://bio.tools/i-sites> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0166,
@@ -244957,7 +250631,7 @@ Information embedded in ligand-binding residues (LBRs) of proteins is important
     biotools:primaryContact "Chris Bystroff" .
 
 <https://bio.tools/i-tasser> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
@@ -244965,7 +250639,18 @@ Information embedded in ligand-binding residues (LBRs) of proteins is important
         edam:topic_1775,
         edam:topic_2275,
         edam:topic_2814 ;
-    sc:citation "pubmed:25883148" ;
+    sc:citation <https://doi.org/10.1016/j.crmeth.2021.100014>,
+        <https://doi.org/10.1038/nmeth.3213>,
+        <https://doi.org/10.1038/nprot.2010.5>,
+        <https://doi.org/10.1093/nar/gkv342>,
+        "pmcid:PMC2849174",
+        "pmcid:PMC4428668",
+        "pmcid:PMC4489253",
+        "pmcid:PMC8336924",
+        "pubmed:20360767",
+        "pubmed:25549265",
+        "pubmed:25883148",
+        "pubmed:34355210" ;
     sc:description "Best in tertiary structure prediction (as ‘Zhang-Server’) in the community-wide blind benchmarks CASP7 and CASP8. It uses mainly profile-profile comparison to identify templates and alignments for deriving distance constraints. Its power lies in how it combines the distance constraints from up to the 50 best-ranked templates. It performs some knowledge-based free modelling in regions without any template-based information." ;
     sc:featureList edam:operation_0310,
         edam:operation_0474 ;
@@ -244978,7 +250663,7 @@ Information embedded in ligand-binding residues (LBRs) of proteins is important
     biotools:primaryContact "Yang Zhang" .
 
 <https://bio.tools/i-tasser-mr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_2828 ;
@@ -244995,7 +250680,7 @@ Information embedded in ligand-binding residues (LBRs) of proteins is important
     sc:url "http://zhanglab.ccmb.med.umich.edu/I-TASSER-MR" .
 
 <https://bio.tools/i-tracker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121 ;
     sc:citation <https://doi.org/10.1186/1471-2164-6-145> ;
@@ -245010,7 +250695,7 @@ Information embedded in ligand-binding residues (LBRs) of proteins is important
     biotools:primaryContact "Ian Shadforth" .
 
 <https://bio.tools/i-tree_cool_river> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_3382 ;
     sc:citation <https://doi.org/10.1016/J.MEX.2020.100808>,
@@ -245024,29 +250709,26 @@ This method paper explains the i-Tree Cool River model algorithms for simulating
     sc:name "i-Tree Cool River" ;
     sc:url "https://www.itreetools.org/tools/research-suite/" .
 
-<https://bio.tools/i10> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_2640,
-        edam:topic_3334,
-        edam:topic_3384,
-        edam:topic_3400,
-        edam:topic_3421 ;
-    sc:citation <https://doi.org/10.1093/NEUONC/NOY130.073>,
-        "pmcid:PMC6168867" ;
-    sc:description """Introduction of a telephone results clinic in Neuro-Oncology follow-up.
-
-PP33. NURSE-LED TELEPHONE CLINICS IMPROVE PATIENT SATISFACTION AND ENHANCE FOLLOW-UP FOR BENIGN.
-
-Abstract. BACKGROUND: Addenbrooke’s Hospital (CUHFT) is the regional specialist neurosurgical centre for East Anglia, providing neuro-oncology care to a catchm.
-
-We use cookies to enhance your experience on our website. By clicking 'continue' or by continuing to use our website, you are agreeing to our use of cookies. You can change your cookie settings at any time.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'Improving patient satisfaction', 'telephone clinic', 'telephone clinics', 'outpatient neuro-oncology'""" ;
-    sc:featureList edam:operation_3435 ;
-    sc:name "i10" ;
-    sc:url "https://academic.oup.com/neuro-oncology/article-abstract/19/suppl_l/i10/3059769" .
+<https://bio.tools/i2app> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workbench" ;
+    sc:applicationSubCategory edam:topic_0121,
+        edam:topic_0154,
+        edam:topic_3318,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.3389/FGENE.2022.884589>,
+        "pmcid:PMC9091563",
+        "pubmed:35571057" ;
+    sc:description "a computational approach called i2APP that can identify APPs using a two-step machine learning framework" ;
+    sc:featureList edam:operation_3631,
+        edam:operation_3936,
+        edam:operation_3937 ;
+    sc:license "Not licensed" ;
+    sc:name "i2APP" ;
+    sc:url "https://github.com/greyspring/i2APP" .
 
 <https://bio.tools/i2d> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0602,
@@ -245070,7 +250752,7 @@ We use cookies to enhance your experience on our website. By clicking 'continue'
     biotools:primaryContact "Igor Jurisica" .
 
 <https://bio.tools/i2d_r> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3303,
         edam:topic_3382 ;
@@ -245086,7 +250768,7 @@ The R package i2d is a novel tool that allows users to transform an image into a
     sc:url "http://github.com/XiaoyuLiang/i2d" .
 
 <https://bio.tools/i2dash> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3170,
@@ -245105,7 +250787,7 @@ Iterative and Interactive Dashboards.""" ;
     sc:url "https://gitlab.gwdg.de/loosolab/container/i2dash.deployment" .
 
 <https://bio.tools/i2i-siteengine> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0128,
@@ -245128,7 +250810,7 @@ Iterative and Interactive Dashboards.""" ;
     biotools:primaryContact "I2I-SiteEngine Administrator" .
 
 <https://bio.tools/i3drefine> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_2275,
@@ -245145,7 +250827,7 @@ Iterative and Interactive Dashboards.""" ;
     biotools:primaryContact "Jianlin Cheng" .
 
 <https://bio.tools/i4mC-ROSE> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3295,
@@ -245160,7 +250842,7 @@ i4mC-ROSE is available for public""" ;
     sc:url "http://kurata14.bio.kyutech.ac.jp/i4mC-ROSE/" .
 
 <https://bio.tools/i4mc-mouse> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3295,
@@ -245175,8 +250857,31 @@ i4mC-Mouse is available for public.""" ;
     sc:name "i4mC-Mouse" ;
     sc:url "http://kurata14.bio.kyutech.ac.jp/i4mC-Mouse/" .
 
+<https://bio.tools/i6ma-caps> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "DNA sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0621,
+        edam:topic_0654,
+        edam:topic_0780,
+        edam:topic_3295,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC434>,
+        "pubmed:35771648" ;
+    sc:description "A CapsuleNet-based framework for identifying DNA N6-methyladenine sites." ;
+    sc:featureList edam:operation_3927 ;
+    sc:isAccessibleForFree true ;
+    sc:name "i6mA-Caps" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://nsclbio.jbnu.ac.kr/tools/i6mA-Caps/" .
+
 <https://bio.tools/i6ma-dncp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_0780,
@@ -245192,7 +250897,7 @@ i4mC-Mouse is available for public.""" ;
     biotools:primaryContact "Liang Kong" .
 
 <https://bio.tools/i6ma-stack> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0621,
@@ -245207,7 +250912,7 @@ Welcome to Our Bioinformatics Lab!.""" ;
     sc:url "http://nsclbio.jbnu.ac.kr/tools/i6mA-stack/" .
 
 <https://bio.tools/i6ma-vc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0654,
@@ -245225,7 +250930,7 @@ Welcome to Our Bioinformatics Lab!.""" ;
     biotools:primaryContact <https://orcid.org/0000-0001-8786-0940> .
 
 <https://bio.tools/iACetyP> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0601,
         edam:topic_0605,
@@ -245246,7 +250951,7 @@ Enter the sequences of query proteins in FASTA format (Example), and select Subm
     sc:url "http://www.jci-bioinfo.cn/iAcetyP" .
 
 <https://bio.tools/iATC-NRAKEL> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3336,
@@ -245263,7 +250968,7 @@ Functions : Recognizing the Anatomical Therapeutic Chemical (ATC) classes of fir
     sc:url "https://github.com/zhou256/iATC-NRAKEL" .
 
 <https://bio.tools/iBEX> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0605,
         edam:topic_3384,
@@ -245278,7 +250983,7 @@ A device-independent software package, named iBEX, is developed to accelerate th
     sc:url "https://github.com/altaybrusan/ibex/tree/FastDev" .
 
 <https://bio.tools/iCite> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3303,
@@ -245306,7 +251011,7 @@ Bulk data can be accessed at the iCite database snapshot repository""" ;
     sc:url "https://icite.od.nih.gov" .
 
 <https://bio.tools/iDASH> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0208,
         edam:topic_3168,
@@ -245322,7 +251027,7 @@ Solution to iDASH'19 challenge track 1.""" ;
     sc:url "https://github.com/gersteinlab/iDASH19bc" .
 
 <https://bio.tools/iDEF-PseRAAC> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0157,
@@ -245335,7 +251040,7 @@ Solution to iDASH'19 challenge track 1.""" ;
     sc:url "http://bioinfor.imu.edu.cn/idpf/public/" .
 
 <https://bio.tools/iDEP> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_3170,
@@ -245357,7 +251062,7 @@ Solution to iDASH'19 challenge track 1.""" ;
     biotools:primaryContact "X. Ge" .
 
 <https://bio.tools/iDHS-DMCAC> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3168 ;
@@ -245374,7 +251079,7 @@ Solution to iDASH'19 challenge track 1.""" ;
     sc:url "https://github.com/shengli0201/Datasets" .
 
 <https://bio.tools/iDNA6mA-PseKNC> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3169 ;
@@ -245394,7 +251099,7 @@ Solution to iDASH'19 challenge track 1.""" ;
     biotools:primaryContact "Hao Lin" .
 
 <https://bio.tools/iDNA6mA-Rice> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0654,
@@ -245408,7 +251113,7 @@ Solution to iDASH'19 challenge track 1.""" ;
     sc:url "http://lin-group.cn/server/iDNA6mA-Rice" .
 
 <https://bio.tools/iDScore> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3398,
         edam:topic_3399,
@@ -245419,16 +251124,8 @@ Solution to iDASH'19 challenge track 1.""" ;
     sc:name "iDScore" ;
     sc:url "http://eadv-idscore.dbm.unisi.it" .
 
-<https://bio.tools/iDamage> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3127 ;
-    sc:citation <https://doi.org/10.1093/NAR/GKZ723>,
-        "pubmed:31418026" ;
-    sc:description "> MEDIUM CONFIDENCE! | > HOMEPAGE MISSING! | > CORRECT NAME OF TOOL COULD ALSO BE 'lesion' | a method to integrate modified DNA into the yeast genome | In order to explore the mechanisms employed by living cells to deal with DNA alterations, we have developed a method by which we insert a modified DNA into a specific site of the yeast genome. This is achieved by the site-specific integration of a modified plasmid at a chosen locus of the genome of Saccharomyces cerevisiae, through the use of the Cre lox recombination system. In the present work, we have used our method to insert a single UV lesion into the yeast genome, and studied how the balance between error-free and error-prone lesion bypass is regulated. We show that the inhibition of homologous recombination, either directly (by the inactivation of Rad51 recombinase) or through its control by preventing the polyubiquitination of PCNA (ubc13 mutant), leads to a strong increase in the use of Trans Lesion Synthesis (TLS)" ;
-    sc:name "iDamage" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31418026" .
-
 <https://bio.tools/iEDGE> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -245454,7 +251151,7 @@ Integrative analysis of (Epi-)DNA and Gene Expression Data.""" ;
     sc:url "https://montilab.bu.edu/iEDGE" .
 
 <https://bio.tools/iEEGview> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3304,
@@ -245470,7 +251167,7 @@ Localization and Visualization of Intracranial Electrodes.""" ;
     sc:url "https://github.com/GuangyeLiGit/iEEGview" .
 
 <https://bio.tools/iEnhancer-ECNN> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0203,
@@ -245487,7 +251184,7 @@ BACKGROUND:Enhancers are non-coding DNA fragments which are crucial in gene regu
     sc:url "https://github.com/ngphubinh/enhancers" .
 
 <https://bio.tools/iEtD> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_3376 ;
@@ -245499,7 +251196,7 @@ BACKGROUND:Enhancers are non-coding DNA fragments which are crucial in gene regu
     sc:url "https://ietd.epistemonikos.org/" .
 
 <https://bio.tools/iGMDR> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0208,
         edam:topic_2640,
@@ -245520,7 +251217,7 @@ The efficacy of anticancer drugs usually varies from individual to individual, m
     sc:url "https://igmdr.modellab.cn" .
 
 <https://bio.tools/iGUIDE> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3295,
@@ -245543,7 +251240,7 @@ The efficacy of anticancer drugs usually varies from individual to individual, m
     biotools:primaryContact "Chris Nobles" .
 
 <https://bio.tools/iLINCS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0208,
@@ -245561,7 +251258,7 @@ This repository consists of set of exeamples to showcase the ways of interacting
     sc:url "http://ilincs.org" .
 
 <https://bio.tools/iLearn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
@@ -245586,7 +251283,7 @@ This repository consists of set of exeamples to showcase the ways of interacting
         "Zhen Chen" .
 
 <https://bio.tools/iMARGI> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0102,
@@ -245603,23 +251300,8 @@ Overview — iMARGI Pipeline 1.1 documentation.""" ;
     sc:name "iMARGI" ;
     sc:url "https://sysbio.ucsd.edu/imargi_pipeline" .
 
-<https://bio.tools/iMED> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3067,
-        edam:topic_3423,
-        edam:topic_3489 ;
-    sc:citation <https://doi.org/10.3205/ZMA001260>,
-        "pmcid:PMC6883244",
-        "pubmed:31815162" ;
-    sc:description """The Hamburg integrated medical degree program iMED.
-
-Der iMED-Studiengang wurde von Lehrenden und Studierenden gemeinsam entwickelt und vernetzt von Anfang an theoretische Grundlagen mit klinischer Praxis.
-
-Seit 2012 bieten wir mit dem integrierten Modellstudiengang Medizin Hamburg (iMED) ein zukunftsweisendes Konzept für die Ausbildung von Ärztinnen und Ärzten. Lehrende aus allen Fächern haben gemeinsam mit Studierenden in einer mehrjährigen Vorbereitungsphase einen Studiengang entwickelt, der von Anfang an die theoretischen Grundlagenfächer mit der klinischen Praxis vernetzt. Unser Ansatz hat bundesweiten Modellcharakter: zentrale Empfehlungen des Wissenschaftsrates für die Weiterentwicklung des Medizinstudiums in Deutschland finden sich im iMED – Konzept wieder. Theoretisch können Sie auch woanders Medizin studieren – praktisch am besten bei uns""" ;
-    sc:name "iMED" ;
-    sc:url "https://www.uke.de/studium-lehre/modellstudiengang-medizin-imed/" .
-
 <https://bio.tools/iMEGES> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_3173,
         edam:topic_3419,
@@ -245642,7 +251324,7 @@ Seit 2012 bieten wir mit dem integrierten Modellstudiengang Medizin Hamburg (iME
         "Kai Wang" .
 
 <https://bio.tools/iMGEins> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0798,
@@ -245661,7 +251343,7 @@ Seit 2012 bieten wir mit dem integrierten Modellstudiengang Medizin Hamburg (iME
     sc:url "https://github.com/DMnBI/iMGEins" .
 
 <https://bio.tools/iMIRAGE> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0625,
@@ -245686,7 +251368,7 @@ With a growing repertoire of publicly available transcriptomic data, it is now p
     sc:url "https://aritronath.github.io/iMIRAGE/index.html" .
 
 <https://bio.tools/iMKT> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
@@ -245712,21 +251394,8 @@ With a growing repertoire of publicly available transcriptomic data, it is now p
     biotools:primaryContact <https://orcid.org/0000-0002-0374-1475>,
         "Jesús Murga" .
 
-<https://bio.tools/iMaxDriver> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0203,
-        edam:topic_0602,
-        edam:topic_2640 ;
-    sc:citation <https://doi.org/10.1016/J.COMPBIOMED.2019.103362>,
-        "pubmed:31561101" ;
-    sc:description "> MEDIUM CONFIDENCE! | > HOMEPAGE MISSING! | Cancer driver gene discovery in transcriptional regulatory networks using influence maximization approach | Cancer driver genes (CDGs) are the genes whose mutations cause tumor growth. Several computational methods have been previously developed for finding CDGs. Most of these methods are sequence-based, that is, they rely on finding key mutations in genomic data to predict CDGs. In the present work, we propose iMaxDriver as a network-based tool for predicting driver genes by application of influence maximization algorithm on human transcriptional regulatory network (TRN). In the first step of this approach, the TRN is pruned and weighted by exploiting tumor-specific gene expression (GE) data. Then, influence maximization approach is used to find the influence of each gene. The top genes with the highest influence rate are selected as the potential driver genes" ;
-    sc:featureList edam:operation_0277,
-        edam:operation_1781,
-        edam:operation_3439 ;
-    sc:name "iMaxDriver" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31561101" .
-
 <https://bio.tools/iNaturalist> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0780,
@@ -245737,7 +251406,7 @@ With a growing repertoire of publicly available transcriptomic data, it is now p
     sc:url "http://www.inaturalist.org/" .
 
 <https://bio.tools/iPBAvizu> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0108,
@@ -245755,7 +251424,7 @@ Background:Protein 3D structure is the support of its function. Comparison of 3D
     sc:url "https://www.dsimb.inserm.fr/dsimb_tools/iPBAVizu/" .
 
 <https://bio.tools/iPPI-deepL> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0154,
@@ -245771,41 +251440,8 @@ Abstract Motivation Almost all critical functions and processes in cells are sus
     sc:name "iPPI-deepL" ;
     sc:url "https://github.com/model-lab/deeplearning.ppi" .
 
-<https://bio.tools/iPPI_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0128,
-        edam:topic_0154,
-        edam:topic_3474,
-        edam:topic_3557,
-        edam:topic_3794 ;
-    sc:citation <https://doi.org/10.1101/843755> ;
-    sc:description """A deep learning framework for improving protein interaction prediction using sequence properties.
-
-Abstract Motivation Almost all critical functions and processes in cells are sustained by the cellular networks of protein-protein interactions (PPIs), understanding these is therefore crucial in the investigation of biological systems. Despite all past efforts, we still lack high-quality PPI data for constructing the networks, which makes it challenging to study the functions of association of proteins. High-throughput experimental techniques have produced abundant data for systematically studying the cellular networks of a biological system and the development of computational method for PPI identification.
-
-||| HOMEPAGE MISSING!.
-
-||| NAME (iPPI) SIMILAR TO (PUB. DIFFERENT) bio.tools/ippi (IPPI).
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'deep learning-based', 'deep learning'""" ;
-    sc:featureList edam:operation_2464,
-        edam:operation_2492,
-        edam:operation_3439 ;
-    sc:name "iPPI_autogenerated" ;
-    sc:url "https://doi.org/10.1101/843755" .
-
-<https://bio.tools/iPSWPseDNC-DL> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0602,
-        edam:topic_0749,
-        edam:topic_3474 ;
-    sc:citation <https://doi.org/10.1016/J.YGENO.2019.08.009>,
-        "pubmed:31437540" ;
-    sc:description "Identification of prokaryotic promoters and their strength by integrating heterogeneous features | The promoter is a regulatory DNA region and important for gene transcriptional regulation. It is located near the transcription start site (TSS) upstream of the corresponding gene. In the post-genomics era, the availability of data makes it possible to build computational models for robustly detecting the promoters as these models are expected to be helpful for academia and drug discovery. Until recently, developed models focused only on discriminating the sequences into promoter and non-promoter. However, promoter predictors can be further improved by considering weak and strong promoter classification. In this work, we introduce a hybrid model, named iPSW(PseDNC-DL), for identification of prokaryotic promoters and their strength. It combines a convolutional neural network with a pseudo-di-nucleotide composition (PseDNC)" ;
-    sc:featureList edam:operation_0438 ;
-    sc:name "iPSW(PseDNC-DL" ;
-    sc:url "https://home.jbnu.ac.kr/NSCL/PseDNC-DL.htm" .
-
 <https://bio.tools/iPro70-FMWin> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3794 ;
@@ -245822,7 +251458,7 @@ Abstract Motivation Almost all critical functions and processes in cells are sus
     biotools:primaryContact "Siddiqur Rahman" .
 
 <https://bio.tools/iProDNA-CapsNet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0749,
@@ -245841,23 +251477,8 @@ Since protein-DNA interactions are highly essential to diverse biological events
     sc:name "iProDNA-CapsNet" ;
     sc:url "https://github.com/ngphubinh/iProDNA-CapsNet" .
 
-<https://bio.tools/iPromoter-BnCNN> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0102,
-        edam:topic_0749,
-        edam:topic_3512 ;
-    sc:citation <https://doi.org/10.1101/2019.12.27.884965> ;
-    sc:description """a Novel Branched CNN Based Predictor for Identifying and Classifying Sigma Promoters.
-
-Abstract Motivation Promoter is a short region of DNA which is responsible for initiating transcription of specific genes. Development of computational tools for automatic identification of promoters is in high demand. According to the difference of functions, promoters can be of different types. Promoters may have both intra and inter class variation and similarity in terms of consensus sequences. Accurate classification of various types of sigma promoters still remains a challenge. Results We present iPromoter-BnCNN for identification and accurate classification of six types of promoters - σ 24 , σ 28 , σ 32 , σ 38 , σ 54 , σ 70. It is a CNN based classifier which combines local features related to monomer nucleotide sequence, trimer nucleotide sequence, dimer structural properties and trimer structural properties through the use of parallel branching.
-
-||| HOMEPAGE MISSING!""" ;
-    sc:featureList edam:operation_0440,
-        edam:operation_2489 ;
-    sc:name "iPromoter-BnCNN" ;
-    sc:url "https://doi.org/10.1101/2019.12.27.884965" .
-
 <https://bio.tools/iProt-Sub> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0154,
@@ -245875,7 +251496,7 @@ Abstract Motivation Promoter is a short region of DNA which is responsible for i
     sc:url "http://iprot-sub.erc.monash.edu.au/" .
 
 <https://bio.tools/iQSP> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -245894,7 +251515,7 @@ Enter your input sequence(s) in FASTA format Insert example data""" ;
     sc:url "http://codes.bio/iqsp/" .
 
 <https://bio.tools/iRNA-m2G> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0621,
@@ -245918,7 +251539,7 @@ Benchmark dataset S2 contains 143 non-m2G site containing sequences (same as dat
     sc:url "http://lin-group.cn/server/iRNA-m2G.php" .
 
 <https://bio.tools/iRNA-m7G> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3308,
@@ -245936,7 +251557,7 @@ N7-methylguanosine (m7G) is an essential RNA modification and participates in a
     sc:url "http://lin-group.cn/server/iRNA-m7G/" .
 
 <https://bio.tools/iRNAD> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0099,
@@ -245955,7 +251576,7 @@ N7-methylguanosine (m7G) is an essential RNA modification and participates in a
     biotools:primaryContact "Hao Lin" .
 
 <https://bio.tools/iRO-PsekGCC> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0654 ;
@@ -245971,7 +251592,7 @@ N7-methylguanosine (m7G) is an essential RNA modification and participates in a
     sc:url "http://bliulab.net/iRO-PsekGCC/" .
 
 <https://bio.tools/iRODS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3168,
@@ -245994,7 +251615,7 @@ N7-methylguanosine (m7G) is an essential RNA modification and participates in a
     biotools:primaryContact "iRODS Consortium Team" .
 
 <https://bio.tools/iS-CellR> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_3170,
@@ -246014,7 +251635,7 @@ N7-methylguanosine (m7G) is an essential RNA modification and participates in a
     biotools:primaryContact "Mitulkumar V. Patel" .
 
 <https://bio.tools/iSMU> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0602,
@@ -246033,7 +251654,7 @@ Streptococcus mutans is a Gram-positive bacterium that thrives under acidic cond
     sc:url "http://jensenlab.net/" .
 
 <https://bio.tools/iSTREEM> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_0780,
@@ -246049,7 +251670,7 @@ Predicted environmental concentrations are calculated for the continental United
     sc:url "https://www.istreem.org/" .
 
 <https://bio.tools/iScore> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0769,
@@ -246078,7 +251699,7 @@ Free document hosting provided by Read the Docs""" ;
     sc:url "https://github.com/DeepRank/iScore" .
 
 <https://bio.tools/iSeqQC> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3170,
@@ -246092,7 +251713,7 @@ Free document hosting provided by Read the Docs""" ;
     sc:url "http://cancerwebpa.jefferson.edu/iSeqQC" .
 
 <https://bio.tools/iSyTE> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0108,
@@ -246112,7 +251733,7 @@ A free resource for expression-based gene discovery in the eye""" ;
     sc:url "https://research.bioinformatics.udel.edu/iSyTE/" .
 
 <https://bio.tools/iTerm-PseKNC> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0157,
@@ -246132,7 +251753,7 @@ A free resource for expression-based gene discovery in the eye""" ;
     biotools:primaryContact "Hao Lin" .
 
 <https://bio.tools/iTextMine> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0218,
         edam:topic_0602,
@@ -246154,7 +251775,7 @@ A free resource for expression-based gene discovery in the eye""" ;
     sc:url "https://research.bioinformatics.udel.edu/itextmine/integrate" .
 
 <https://bio.tools/iVariantGuide> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0602,
@@ -246174,8 +251795,30 @@ A free resource for expression-based gene discovery in the eye""" ;
     sc:url "https://advaitabio.com/ivariantguide/" ;
     biotools:primaryContact "ADVAITA" .
 
+<https://bio.tools/iaaa> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_0634,
+        edam:topic_3170,
+        edam:topic_3305,
+        edam:topic_3308 ;
+    sc:citation <https://doi.org/10.1093/DATABASE/BAAC050>,
+        "pmcid:PMC9235372",
+        "pubmed:35758882" ;
+    sc:description "A transcriptome atlas and interactive analysis platform for autoimmune disease." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_0337,
+        edam:operation_3463 ;
+    sc:isAccessibleForFree true ;
+    sc:name "IAAA" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://galaxy.ustc.edu.cn/IAAA" .
+
 <https://bio.tools/iacp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0202,
@@ -246194,7 +251837,7 @@ A free resource for expression-based gene discovery in the eye""" ;
     biotools:primaryContact "Hao Lin" .
 
 <https://bio.tools/iacp-drlf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -246214,8 +251857,28 @@ This repository contains the source code and links to the data and pretrained em
     sc:name "iACP-DRLF" ;
     sc:url "http://public.aibiochem.net/iACP-DRLF/" .
 
+<https://bio.tools/iacvp> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0091,
+        edam:topic_0121,
+        edam:topic_0154,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1093/BIB/BBAC265>,
+        "pubmed:35772910" ;
+    sc:description "Computational prediction of anticoronavirus peptides (ACVPs) using their sequences." ;
+    sc:featureList edam:operation_0224,
+        edam:operation_3092,
+        edam:operation_3631 ;
+    sc:isAccessibleForFree true ;
+    sc:name "iACVP" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://kurata35.bio.kyutech.ac.jp/iACVP" .
+
 <https://bio.tools/iadmix> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3053,
@@ -246233,7 +251896,7 @@ This repository contains the source code and links to the data and pretrained em
     sc:url "https://bansal-lab.github.io/software/iadmix.html" .
 
 <https://bio.tools/iamp-2l> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0154,
@@ -246252,7 +251915,7 @@ This repository contains the source code and links to the data and pretrained em
     sc:url "http://www.jci-bioinfo.cn/iAMP-2L" .
 
 <https://bio.tools/iamxt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3382 ;
     sc:citation <https://doi.org/10.1016/j.softx.2017.03.001> ;
@@ -246268,7 +251931,7 @@ This repository contains the source code and links to the data and pretrained em
     sc:url "https://github.com/ElsevierSoftwareX/SOFTX-D-15-00049" .
 
 <https://bio.tools/iamy-scm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_3306,
@@ -246285,7 +251948,7 @@ iAMY-SCM: Improved Prediction and Analysis of Amyloid Proteins Using Scoring Car
     sc:url "http://camt.pythonanywhere.com/iAMY-SCM" .
 
 <https://bio.tools/iarg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_2533,
@@ -246299,8 +251962,45 @@ iAMY-SCM: Improved Prediction and Analysis of Amyloid Proteins Using Scoring Car
     sc:url "http://www.brown.edu/Research/Istrail_Lab/iarg.php" ;
     biotools:primaryContact "Sorin Istrail" .
 
+<https://bio.tools/ias-net> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0593,
+        edam:topic_3444 ;
+    sc:citation <https://doi.org/10.1002/MP.15212>,
+        "pubmed:34494276" ;
+    sc:description "Joint intraclassly adaptive GAN and segmentation network for unsupervised cross-domain in neonatal brain MRI segmentation." ;
+    sc:featureList edam:operation_3435,
+        edam:operation_3443 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "IAS-NET" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/lb-whu/RAS-NET" .
+
+<https://bio.tools/iasdr> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_3318,
+        edam:topic_3360,
+        edam:topic_3379,
+        edam:topic_3399,
+        edam:topic_3452 ;
+    sc:citation <https://doi.org/10.1093/GERONI/IGAB046.298>,
+        "pmcid:PMC8680857" ;
+    sc:description "The Integrated Aging Studies Databank and Repository (IASDR) IASDR serves as a resource for the scientific community to foster new scientific questions and analyses" ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "IASDR" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://www.peppercenter.org/public/dspIASDR.cfm" .
+
 <https://bio.tools/iaseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3169,
@@ -246319,7 +252019,7 @@ iAMY-SCM: Improved Prediction and Analysis of Amyloid Proteins Using Scoring Car
     biotools:primaryContact "Yingying Wei" .
 
 <https://bio.tools/iassembler> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0196,
@@ -246335,7 +252035,7 @@ iAMY-SCM: Improved Prediction and Analysis of Amyloid Proteins Using Scoring Car
     biotools:primaryContact "Support" .
 
 <https://bio.tools/iaunet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3382,
         edam:topic_3474 ;
@@ -246353,22 +252053,22 @@ Person re-identification (reID) by CNNs based networks has achieved favorable pe
 
 <https://bio.tools/ibbig> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2082" ;
-            sc:name "Matrix" ;
-            sc:sameAs "http://edamontology.org/data_2082" ] ;
+            sc:additionalType "http://edamontology.org/data_2082" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "Matrix" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1772" ;
-            sc:name "Score" ;
-            sc:sameAs "http://edamontology.org/data_1772" ],
+            sc:additionalType "http://edamontology.org/data_1772" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Score" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ],
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Plot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -246387,8 +252087,14 @@ Person re-identification (reID) by CNNs based networks has achieved favorable pe
     sc:url "http://bioconductor.org/packages/release/bioc/html/iBBiG.html" ;
     biotools:primaryContact "Aedin Culhane" .
 
+<https://bio.tools/ibd_benchmark_tool> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:description "This open source tool benchmarks IBD detection tools with multiple measurements." ;
+    sc:name "IBD Benchmark Tool" ;
+    sc:url "https://github.com/ZhiGroup/IBD_benchmark" .
+
 <https://bio.tools/ibddb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Bioinformatics portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0625,
@@ -246407,7 +252113,7 @@ Person re-identification (reID) by CNNs based networks has achieved favorable pe
     biotools:primaryContact <https://orcid.org/0000-0002-9757-4048> .
 
 <https://bio.tools/ibdfinder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0625,
@@ -246424,7 +252130,7 @@ Person re-identification (reID) by CNNs based networks has achieved favorable pe
     sc:url "http://dna.leeds.ac.uk/ibdfinder/" .
 
 <https://bio.tools/ibdkin> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0654,
@@ -246441,7 +252147,7 @@ IBDkin is a software for IBD-based kinship estimation. IBDkin scales to hundreds
     sc:url "https://github.com/YingZhou001/IBDkin" .
 
 <https://bio.tools/ibdmap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_2885,
@@ -246457,7 +252163,7 @@ IBDkin is a software for IBD-based kinship estimation. IBDkin scales to hundreds
     sc:url "http://bioinfo.cs.technion.ac.il/IBDmap/" .
 
 <https://bio.tools/ibdseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102 ;
     sc:citation <https://doi.org/10.1016/j.ajhg.2013.09.014> ;
@@ -246471,7 +252177,7 @@ IBDkin is a software for IBD-based kinship estimation. IBDkin scales to hundreds
     sc:url "http://faculty.washington.edu/browning/ibdseq.html" .
 
 <https://bio.tools/ibdsim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3053,
@@ -246489,8 +252195,29 @@ IBDkin is a software for IBD-based kinship estimation. IBDkin scales to hundreds
     sc:url "http://raphael.leblois.free.fr/#softwares" ;
     biotools:primaryContact "Raphael Leblois" .
 
+<https://bio.tools/ibex_imaging> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0625,
+        edam:topic_2830,
+        edam:topic_3168,
+        edam:topic_3382,
+        edam:topic_3518 ;
+    sc:citation <https://doi.org/10.1038/S41596-021-00644-9>,
+        "pubmed:35022622" ;
+    sc:description "Aligning images acquired with the IBEX microscopy imaging technique" ;
+    sc:featureList edam:operation_0480,
+        edam:operation_3443 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Apache-2.0" ;
+    sc:name "IBEX" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/niaid/sitk-ibex" .
+
 <https://bio.tools/ibh> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0602,
@@ -246509,7 +252236,7 @@ IBDkin is a software for IBD-based kinship estimation. IBDkin scales to hundreds
     biotools:primaryContact "Kircicegi Korkmaz" .
 
 <https://bio.tools/ibig> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2259,
@@ -246526,7 +252253,7 @@ IBDkin is a software for IBD-based kinship estimation. IBDkin scales to hundreds
     sc:url "http://lei.big.ac.cn/ibig" .
 
 <https://bio.tools/ibiodegpred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0602,
@@ -246546,7 +252273,7 @@ Welcome to SVM Biodegradability predictor. This is a tool for predicting biodegr
     sc:url "https://sysbiol.cnb.csic.es/BiodegPred/" .
 
 <https://bio.tools/ibioprovis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0209,
@@ -246565,7 +252292,7 @@ iBioProVis has its own in house bioactivity dataset curated from ChEMBL (v25) ha
     sc:url "https://ibpv.kansil.org/" .
 
 <https://bio.tools/ibis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:citation "pubmed:19682367" ;
@@ -246578,8 +252305,34 @@ iBioProVis has its own in house bioactivity dataset curated from ChEMBL (v25) ha
     sc:url "http://bioinf.eva.mpg.de/Ibis/" ;
     biotools:primaryContact "Martin Kircher" .
 
+<https://bio.tools/ibis2analyzer> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_0130,
+        edam:topic_0623,
+        edam:topic_3293,
+        edam:topic_3318 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAC481>,
+        "pmcid:PMC9252744",
+        "pubmed:35670671" ;
+    sc:description "A web server for a phylogeny-driven coevolution analysis of protein families." ;
+    sc:featureList edam:operation_0323,
+        edam:operation_0492,
+        edam:operation_0556 ;
+    sc:isAccessibleForFree true ;
+    sc:name "iBIS2Analyzer" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://ibis2analyzer.lcqb.upmc.fr/" .
+
 <https://bio.tools/ibis_ncbi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0154,
@@ -246606,10 +252359,10 @@ iBioProVis has its own in house bioactivity dataset curated from ChEMBL (v25) ha
 
 <https://bio.tools/ibitter-fuse> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0121,
@@ -246632,7 +252385,7 @@ iBioProVis has its own in house bioactivity dataset curated from ChEMBL (v25) ha
     sc:url "http://camt.pythonanywhere.com/iBitter-Fuse" .
 
 <https://bio.tools/ibitter-scm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -246650,7 +252403,7 @@ This is the website for predicting Bitter peptides from the publication called .
     sc:url "http://camt.pythonanywhere.com/iBitter-SCM" .
 
 <https://bio.tools/iblast> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -246668,7 +252421,7 @@ This is the website for predicting Bitter peptides from the publication called .
     sc:url "https://github.com/vtsynergy/iBLAST" .
 
 <https://bio.tools/iblp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0154,
         edam:topic_0621,
@@ -246691,7 +252444,7 @@ Bioluminescent proteins are a class of proteins that widely distributed in many
     sc:url "http://lin-group.cn/server/iBLP" .
 
 <https://bio.tools/ibm_pattern_discovery> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0623,
@@ -246714,7 +252467,7 @@ Bioluminescent proteins are a class of proteins that widely distributed in many
     sc:url "http://cbcsrv.watson.ibm.com/Tspd.html" .
 
 <https://bio.tools/ibmd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_2269,
@@ -246732,7 +252485,7 @@ The benchmark dose (BMD) methodology is used to derive a hazard characterization
     sc:url "https://shiny-efsa.openanalytics.eu/app/bmd" .
 
 <https://bio.tools/ibmq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -246754,7 +252507,7 @@ The benchmark dose (BMD) methodology is used to derive a hazard characterization
     biotools:primaryContact "Greg Imholte" .
 
 <https://bio.tools/ibrena> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0602 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btn061> ;
@@ -246767,7 +252520,7 @@ The benchmark dose (BMD) methodology is used to derive a hazard characterization
     sc:url "http://www.eng.buffalo.edu/~neel/ibrena/" .
 
 <https://bio.tools/ibs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0078,
@@ -246786,7 +252539,7 @@ The benchmark dose (BMD) methodology is used to derive a hazard characterization
         "Yu Xue" .
 
 <https://bio.tools/ibws_ws> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0091,
@@ -246807,7 +252560,7 @@ The benchmark dose (BMD) methodology is used to derive a hazard characterization
     biotools:primaryContact "Paolo Romano" .
 
 <https://bio.tools/ic50-to-ki> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0821,
         edam:topic_1317 ;
@@ -246819,7 +252572,7 @@ The benchmark dose (BMD) methodology is used to derive a hazard characterization
     biotools:primaryContact "BotDB team" .
 
 <https://bio.tools/icHET> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0780,
@@ -246838,8 +252591,21 @@ The benchmark dose (BMD) methodology is used to derive a hazard characterization
     sc:url "https://github.com/vtphan/HeteroplasmyWorkflow" ;
     biotools:primaryContact "Vinhthuy Phan" .
 
+<https://bio.tools/icaars> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:description "Identification & Classification of Aminoacyl tRNA Synthetases" ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "icaars" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/icaars/index.html> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/icaars/index.html" .
+
 <https://bio.tools/icare> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2640 ;
@@ -246856,7 +252622,7 @@ The benchmark dose (BMD) methodology is used to derive a hazard characterization
     biotools:primaryContact "Bill Wheeler" .
 
 <https://bio.tools/icarps> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -246879,7 +252645,7 @@ iCarPS is a server for the prediction of carbonylation sites based on omputation
     sc:url "http://lin-group.cn/server/iCarPS" .
 
 <https://bio.tools/icarus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0092 ;
@@ -246895,8 +252661,34 @@ iCarPS is a server for the prediction of carbonylation sites based on omputation
     sc:softwareHelp <http://quast.bioinf.spbau.ru/manual.html> ;
     sc:url "http://quast.sourceforge.net/icarus.html" .
 
+<https://bio.tools/icarus_shiny> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0602,
+        edam:topic_0621,
+        edam:topic_2229,
+        edam:topic_2830,
+        edam:topic_3170 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAC322>,
+        "pmcid:PMC9252722",
+        "pubmed:35536286" ;
+    sc:description "ICARUS (Interactive single cell RNA-seq analysis with R-shiny using Seurat) a interactive web server." ;
+    sc:featureList edam:operation_3223,
+        edam:operation_3680,
+        edam:operation_3891,
+        edam:operation_3935 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "ICARUS" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://launch.icarus-scrnaseq.cloud.edu.au/app/ICARUS> ;
+    sc:softwareVersion "2.1" ;
+    sc:url "https://launch.icarus-scrnaseq.cloud.edu.au/" .
+
 <https://bio.tools/icat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application",
         "Library" ;
@@ -246915,7 +252707,7 @@ High throughput sequencing of immune cell receptor sequences presents a unique o
     sc:url "https://github.com/BioHPC/iCAT" .
 
 <https://bio.tools/icataly-pseaac> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -246930,8 +252722,30 @@ High throughput sequencing of immune cell receptor sequences presents a unique o
     sc:softwareHelp <http://www.jci-bioinfo.cn/iCataly/iCata_readme.html> ;
     sc:url "http://www.jci-bioinfo.cn/iCataly-PseAAC" .
 
+<https://bio.tools/icav> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0622,
+        edam:topic_0625,
+        edam:topic_0634,
+        edam:topic_2640,
+        edam:topic_3293 ;
+    sc:citation <https://doi.org/10.1093/DATABASE/BAAB079>,
+        "pmcid:PMC8725190",
+        "pubmed:34907423" ;
+    sc:description "An integrative database of cancer-associated viruses." ;
+    sc:featureList edam:operation_2421,
+        edam:operation_2422,
+        edam:operation_3208 ;
+    sc:isAccessibleForFree true ;
+    sc:name "iCAV" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://icav.omicsbio.info/" .
+
 <https://bio.tools/icave> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0602,
@@ -246949,7 +252763,7 @@ High throughput sequencing of immune cell receptor sequences presents a unique o
     biotools:primaryContact "Zeynep H Gümüş" .
 
 <https://bio.tools/icbm-ocean> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0202,
         edam:topic_3172,
@@ -246974,7 +252788,7 @@ ICBM-Webmaster (Stand: 21.08.2020).""" ;
     sc:url "http://www.icbm.de/icbm-ocean" .
 
 <https://bio.tools/icbn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0625,
@@ -246995,7 +252809,7 @@ ICBM-Webmaster (Stand: 21.08.2020).""" ;
         "Patrick Knupfer" .
 
 <https://bio.tools/icc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3168 ;
@@ -247014,7 +252828,7 @@ ICBM-Webmaster (Stand: 21.08.2020).""" ;
     sc:url "http://indra.mullins.microbiol.washington.edu/ICC/" .
 
 <https://bio.tools/iccare> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0621,
@@ -247039,7 +252853,7 @@ ICBM-Webmaster (Stand: 21.08.2020).""" ;
     sc:url "http://genoweb.toulouse.inra.fr/iccare/index.php" .
 
 <https://bio.tools/icd-10> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Ontology",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0089,
@@ -247062,8 +252876,27 @@ ICBM-Webmaster (Stand: 21.08.2020).""" ;
     sc:softwareHelp <http://www.icd10data.com/> ;
     sc:url "http://www.icd10data.com" .
 
+<https://bio.tools/icd-11> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0108,
+        edam:topic_0605,
+        edam:topic_0634,
+        edam:topic_3305 ;
+    sc:citation <https://doi.org/10.1186/S12911-021-01534-6>,
+        "pmcid:PMC8577172",
+        "pubmed:34753471" ;
+    sc:description "An international classification of diseases for the twenty-first century." ;
+    sc:featureList edam:operation_0310 ;
+    sc:isAccessibleForFree true ;
+    sc:name "ICD-11" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://icd.who.int" .
+
 <https://bio.tools/icd9-classifier> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3063,
@@ -247082,7 +252915,7 @@ ICBM-Webmaster (Stand: 21.08.2020).""" ;
     biotools:primaryContact "Tom Pollard" .
 
 <https://bio.tools/icdi-psefpt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0602,
@@ -247099,7 +252932,7 @@ ICBM-Webmaster (Stand: 21.08.2020).""" ;
     sc:url "http://www.jci-bioinfo.cn/iCDI-PseFpt/" .
 
 <https://bio.tools/ice> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3301,
@@ -247116,7 +252949,7 @@ ICBM-Webmaster (Stand: 21.08.2020).""" ;
     biotools:primaryContact "Hector Plahar" .
 
 <https://bio.tools/ice_contig> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0621,
@@ -247138,7 +252971,7 @@ ICBM-Webmaster (Stand: 21.08.2020).""" ;
     biotools:primaryContact "iCE Support" .
 
 <https://bio.tools/icebear> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_2828,
@@ -247159,7 +252992,7 @@ IceBear is a research data management tool for structural biology. It currently
     sc:url "https://icebear.fi/" .
 
 <https://bio.tools/iceberg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0621,
@@ -247180,7 +253013,7 @@ IceBear is a research data management tool for structural biology. It currently
     biotools:primaryContact "Hong-Yu OU" .
 
 <https://bio.tools/icekat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0821 ;
@@ -247196,7 +253029,7 @@ An Interactive Continuous Enzyme Kinetics Analysis Tool (ICEKAT) was developed f
     sc:url "https://icekat.herokuapp.com/icekat" .
 
 <https://bio.tools/icellnet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_2229,
@@ -247216,7 +253049,7 @@ To install it, the easiest way is to use the R package devtools and its function
     sc:url "https://github.com/soumelis-lab/ICELLNET" .
 
 <https://bio.tools/icellr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2229,
@@ -247246,14 +253079,12 @@ A toolkit that allows scientists to work with data from single cell sequencing t
 
 <https://bio.tools/icelogo> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1245" ;
-            sc:name "Sequence cluster (protein)" ;
-            sc:sameAs "http://edamontology.org/data_1245" ] ;
+            sc:additionalType "http://edamontology.org/data_1245" ;
+            sc:name "Sequence cluster (protein)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1711" ;
-            sc:name "Sequence alignment image" ;
-            sc:sameAs "http://edamontology.org/data_1711" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1711" ;
+            sc:name "Sequence alignment image" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121 ;
     sc:citation <https://doi.org/10.1038/nmeth1109-786>,
@@ -247269,7 +253100,7 @@ A toolkit that allows scientists to work with data from single cell sequencing t
     sc:url "http://compomics.github.io/projects/icelogo.html" .
 
 <https://bio.tools/icens> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2269,
@@ -247288,7 +253119,7 @@ A toolkit that allows scientists to work with data from single cell sequencing t
     biotools:primaryContact "BioConductor Package Maintainer" .
 
 <https://bio.tools/icer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -247309,7 +253140,7 @@ Label-free proteomics enables the unbiased quantification of thousands of protei
     sc:url "https://github.com/mathiaskalxdorf/IceR/" .
 
 <https://bio.tools/icgc_data_portal> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0659,
@@ -247331,7 +253162,7 @@ Label-free proteomics enables the unbiased quantification of thousands of protei
     biotools:primaryContact "ICGC Support" .
 
 <https://bio.tools/icgebnet_protein_tools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -247352,7 +253183,7 @@ Label-free proteomics enables the unbiased quantification of thousands of protei
     sc:url "http://www.icgeb.org/protein/" .
 
 <https://bio.tools/icgec> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0601,
         edam:topic_0625,
@@ -247374,7 +253205,7 @@ Function: This script is to simultaneously estimate the epigenetic conservation
     sc:url "https://github.com/FionaTJ/ICGEC" .
 
 <https://bio.tools/icheck> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0099,
@@ -247395,7 +253226,7 @@ Function: This script is to simultaneously estimate the epigenetic conservation
     biotools:primaryContact "Weiliang Qiu" .
 
 <https://bio.tools/ichem> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0622,
@@ -247415,7 +253246,7 @@ Function: This script is to simultaneously estimate the epigenetic conservation
     biotools:primaryContact "Dr. Didier Rognan" .
 
 <https://bio.tools/ichespa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3047,
         edam:topic_3172,
@@ -247435,7 +253266,7 @@ chespa, version 1.0.0 http://github.com/pnnl/chespa (accessed MMM YYYY).""" ;
     sc:url "http://github.com/pnnl/chespa" .
 
 <https://bio.tools/ichewiesnake> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0102,
@@ -247458,7 +253289,7 @@ chespa, version 1.0.0 http://github.com/pnnl/chespa (accessed MMM YYYY).""" ;
     sc:url "https://gitlab.com/bfr_bioinformatics/chewieSnake" .
 
 <https://bio.tools/ichip> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0622,
@@ -247478,10 +253309,10 @@ chespa, version 1.0.0 http://github.com/pnnl/chespa (accessed MMM YYYY).""" ;
 
 <https://bio.tools/ichromo> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3108" ;
-            sc:name "Experimental measurement" ;
-            sc:sameAs "http://edamontology.org/data_3108" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3108" ;
+            sc:encodingFormat "http://edamontology.org/format_3620" ;
+            sc:name "Experimental measurement" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0621,
@@ -247504,7 +253335,7 @@ chespa, version 1.0.0 http://github.com/pnnl/chespa (accessed MMM YYYY).""" ;
     sc:url "https://chromo.cloud" .
 
 <https://bio.tools/ichseg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3304,
         edam:topic_3334,
@@ -247522,7 +253353,7 @@ chespa, version 1.0.0 http://github.com/pnnl/chespa (accessed MMM YYYY).""" ;
     biotools:primaryContact "John Muschelli" .
 
 <https://bio.tools/icircda-ltr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0634,
@@ -247538,7 +253369,7 @@ chespa, version 1.0.0 http://github.com/pnnl/chespa (accessed MMM YYYY).""" ;
     sc:url "http://bliulab.net/iCircDA-LTR/" .
 
 <https://bio.tools/icircrbp-dhn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0659,
@@ -247558,38 +253389,35 @@ The 37 training sets of circular RNA (circRNA) and 31 testing sets of linear RNA
 
 <https://bio.tools/iclc> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0860" ;
-            sc:name "Sequence signature data" ;
-            sc:sameAs "http://edamontology.org/data_0860" ],
+            sc:additionalType "http://edamontology.org/data_2193" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Database entry metadata" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2193" ;
-            sc:name "Database entry metadata" ;
-            sc:sameAs "http://edamontology.org/data_2193" ],
+            sc:additionalType "http://edamontology.org/data_2193" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Database entry metadata" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2193" ;
-            sc:name "Database entry metadata" ;
-            sc:sameAs "http://edamontology.org/data_2193" ],
+            sc:additionalType "http://edamontology.org/data_2316" ;
+            sc:name "Cell line name" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2316" ;
-            sc:name "Cell line name" ;
-            sc:sameAs "http://edamontology.org/data_2316" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3671" ;
-            sc:name "Text" ;
-            sc:sameAs "http://edamontology.org/data_3671" ],
+            sc:additionalType "http://edamontology.org/data_2193" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Database entry metadata" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0860" ;
+            sc:name "Sequence signature data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2193" ;
-            sc:name "Database entry metadata" ;
-            sc:sameAs "http://edamontology.org/data_2193" ],
+            sc:additionalType "http://edamontology.org/data_2193" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Database entry metadata" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2193" ;
-            sc:name "Database entry metadata" ;
-            sc:sameAs "http://edamontology.org/data_2193" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3671" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Text" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_3340 ;
     sc:author "Paolo Romano" ;
@@ -247606,7 +253434,7 @@ The 37 training sets of circular RNA (circRNA) and 31 testing sets of linear RNA
         "Paolo Romano" .
 
 <https://bio.tools/iclrbbn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0634,
@@ -247629,7 +253457,7 @@ ICLRBBN, a tool for accurate prediction of potential lncRNA-disease associations
     sc:url "http://leelab2997.cn/" .
 
 <https://bio.tools/iclusterplus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0622 ;
@@ -247648,7 +253476,7 @@ ICLRBBN, a tool for accurate prediction of potential lncRNA-disease associations
         "Ronglai Shen" .
 
 <https://bio.tools/icm_web> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0130,
         edam:topic_0602,
@@ -247667,7 +253495,7 @@ ICLRBBN, a tool for accurate prediction of potential lncRNA-disease associations
     biotools:primaryContact "Thomas C. Bishop" .
 
 <https://bio.tools/icn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2269,
@@ -247685,8 +253513,34 @@ This is an implementation of ICN detection for gene co-expression network (GCN)
     sc:name "ICN" ;
     sc:url "https://figshare.com/articles/software/ICN-package/13229093" .
 
+<https://bio.tools/icn3d> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0128,
+        edam:topic_0130,
+        edam:topic_0166,
+        edam:topic_3382,
+        edam:topic_3542 ;
+    sc:citation <https://doi.org/10.3389/FMOLB.2022.831740>,
+        "pmcid:PMC8892267",
+        "pubmed:35252351" ;
+    sc:description "From Web-Based 3D Viewer to Structural Analysis Tool in Batch Mode." ;
+    sc:featureList edam:operation_0295,
+        edam:operation_0302,
+        edam:operation_0320,
+        edam:operation_0570,
+        edam:operation_2488 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "iCn3D" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://pypi.org/project/icn3dpy/> ;
+    sc:url "https://www.ncbi.nlm.nih.gov/Structure/icn3d/" .
+
 <https://bio.tools/icnv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2885,
         edam:topic_3673,
@@ -247706,7 +253560,7 @@ This is an implementation of ICN detection for gene co-expression network (GCN)
     biotools:primaryContact "Zilu Zhou" .
 
 <https://bio.tools/icobra> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0605 ;
@@ -247727,7 +253581,7 @@ This is an implementation of ICN detection for gene co-expression network (GCN)
     biotools:primaryContact "Charlotte Soneson" .
 
 <https://bio.tools/icodon> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -247744,8 +253598,31 @@ This is an implementation of ICN detection for gene co-expression network (GCN)
     sc:url "https://bazzinilab.shinyapps.io/icodon/" ;
     biotools:primaryContact "Ariel Alejandro Bazzini" .
 
+<https://bio.tools/icomic> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Script" ;
+    sc:applicationSubCategory edam:topic_0622,
+        edam:topic_0769,
+        edam:topic_2640,
+        edam:topic_3170,
+        edam:topic_3676 ;
+    sc:citation <https://doi.org/10.1101/2021.09.18.460896> ;
+    sc:description "iCOMIC is an open source genomic data analysis tool characterized by a user friendly GUI. It integrates many independent core workflows for Whole Genome/Exome Sequencing and RNA-Seq data analysis along with Machine Learning tools, cTaG and NBDriver for cancer related data analysis." ;
+    sc:featureList edam:operation_3223,
+        edam:operation_3227,
+        edam:operation_3800 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Apache-2.0" ;
+    sc:name "iCOMIC" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://icomic-doc.readthedocs.io/en/latest/> ;
+    sc:url "https://github.com/RamanLab/iCOMIC" .
+
 <https://bio.tools/iconvert> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2885,
@@ -247762,7 +253639,7 @@ This is an implementation of ICN detection for gene co-expression network (GCN)
     sc:url "http://bioinformatics.tecnoparco.org/SNPchimp/index.php/links" .
 
 <https://bio.tools/icorn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_3572 ;
     sc:citation "pubmed:20562415" ;
@@ -247773,11 +253650,34 @@ This is an implementation of ICN detection for gene co-expression network (GCN)
     sc:operatingSystem "Linux" ;
     sc:softwareHelp <http://icorn.sourceforge.net/README.txt>,
         <http://icorn.sourceforge.net/documentation.html> ;
+    sc:softwareVersion "1",
+        "2" ;
     sc:url "http://icorn.sourceforge.net/" ;
     biotools:primaryContact "T. D. Otto" .
 
+<https://bio.tools/icorrelationplus> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0130,
+        edam:topic_0176,
+        edam:topic_3382 ;
+    sc:citation <https://doi.org/10.1021/ACS.JCIM.1C00742>,
+        "pubmed:34652149" ;
+    sc:description "A Python package to calculate, visualize and analyze correlation maps of proteins." ;
+    sc:featureList edam:operation_0244,
+        edam:operation_0337,
+        edam:operation_2476 ;
+    sc:isAccessibleForFree true ;
+    sc:license "LGPL-3.0" ;
+    sc:name "icorrelationplus" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://correlationplus.readthedocs.io/en/latest/index.html> ;
+    sc:url "https://github.com/tekpinar/correlationplus" .
+
 <https://bio.tools/icover> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_3174 ;
@@ -247795,7 +253695,7 @@ This is an implementation of ICN detection for gene co-expression network (GCN)
     biotools:primaryContact "Magdalena Calusinska" .
 
 <https://bio.tools/icpagdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0625,
@@ -247814,22 +253714,22 @@ This is an implementation of ICN detection for gene co-expression network (GCN)
 
 <https://bio.tools/icpl_esiquant> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ],
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_3713" ;
+            sc:name "Peptide identification" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3654" ;
+            sc:name "Mass spectrometry spectra" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ],
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Expression data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0944" ;
-            sc:name "Peptide mass fingerprint" ;
-            sc:sameAs "http://edamontology.org/data_0944" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0944" ;
+            sc:encodingFormat "http://edamontology.org/format_3651" ;
+            sc:name "Peptide mass fingerprint" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -247852,22 +253752,22 @@ This is an implementation of ICN detection for gene co-expression network (GCN)
 
 <https://bio.tools/icplquant> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0944" ;
-            sc:name "Peptide mass fingerprint" ;
-            sc:sameAs "http://edamontology.org/data_0944" ],
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_3713" ;
+            sc:name "Peptide identification" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ],
+            sc:additionalType "http://edamontology.org/data_0944" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Peptide mass fingerprint" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ] ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Mass spectrometry spectra" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_3468" ;
+            sc:name "Expression data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -247890,7 +253790,7 @@ This is an implementation of ICN detection for gene co-expression network (GCN)
     sc:url "https://www.biochem.mpg.de/en/rg/lottspeich/technologies/ICPLQuant" .
 
 <https://bio.tools/icr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0749,
@@ -247908,7 +253808,7 @@ This is an implementation of ICN detection for gene co-expression network (GCN)
     sc:url "http://210.212.215.199/icr/index.html" .
 
 <https://bio.tools/icrf_generator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Script" ;
     sc:applicationSubCategory edam:topic_0089,
@@ -247928,8 +253828,33 @@ Semantic interoperability of clinical data requires the use of a common vocabula
     sc:name "iCRF Generator" ;
     sc:url "https://github.com/aderidder/iCRFGenerator/" .
 
+<https://bio.tools/icrisee> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0602,
+        edam:topic_0625,
+        edam:topic_0769,
+        edam:topic_3168 ;
+    sc:citation <https://doi.org/10.1093/BIB/BBAB505>,
+        "pubmed:34905767" ;
+    sc:description "An integrative analysis of CRISPR screen by reducing false positive hits." ;
+    sc:featureList edam:operation_2436,
+        edam:operation_3435,
+        edam:operation_3891 ;
+    sc:isAccessibleForFree true ;
+    sc:name "iCRISEE" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://www.icrisee.com" .
+
 <https://bio.tools/icsc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3068,
         edam:topic_3304,
@@ -247951,7 +253876,7 @@ The proposed algorithm can also be used to obtain subject-level modules from mul
     sc:url "https://github.com/SCSE-Biomedical-Computing-Group/ICSC" .
 
 <https://bio.tools/icscb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_2830,
@@ -247975,7 +253900,7 @@ All SKIP ( 5615 ) RIKEN BRC ( 4111 ) eagle-i ( 3548 ) hPSCreg ( 3367 ).""" ;
     sc:url "http://icscb.stemcellinformatics.org/" .
 
 <https://bio.tools/icsf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0749,
@@ -247992,7 +253917,7 @@ All SKIP ( 5615 ) RIKEN BRC ( 4111 ) eagle-i ( 3548 ) hPSCreg ( 3367 ).""" ;
     biotools:primaryContact "Zhiping Weng" .
 
 <https://bio.tools/icsnpathway> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0602,
@@ -248015,7 +253940,7 @@ All SKIP ( 5615 ) RIKEN BRC ( 4111 ) eagle-i ( 3548 ) hPSCreg ( 3367 ).""" ;
     biotools:primaryContact "ICSNPathway Support" .
 
 <https://bio.tools/ictc-raac> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0202,
@@ -248034,7 +253959,7 @@ Conotoxins are small peptide toxins which are rich in disulfide and have the uni
     sc:url "http://bioinfor.imu.edu.cn/ictcraac" .
 
 <https://bio.tools/ictnet2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0602 ;
@@ -248053,7 +253978,7 @@ Conotoxins are small peptide toxins which are rich in disulfide and have the uni
     sc:url "http://apps.cytoscape.org/apps/ictnet2" .
 
 <https://bio.tools/ictv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0637,
         edam:topic_0781 ;
@@ -248070,7 +253995,7 @@ Conotoxins are small peptide toxins which are rich in disulfide and have the uni
     sc:url "http://www.ictvonline.org/" .
 
 <https://bio.tools/icv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0602,
@@ -248084,7 +254009,7 @@ Conotoxins are small peptide toxins which are rich in disulfide and have the uni
     sc:url "https://icvmapp3r.readthedocs.io" .
 
 <https://bio.tools/icy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_3382 ;
@@ -248098,8 +254023,30 @@ Conotoxins are small peptide toxins which are rich in disulfide and have the uni
     sc:softwareVersion "1.6.1.1" ;
     sc:url "http://www.icy.bioimageanalysis.org/" .
 
+<https://bio.tools/icyp-mfe> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_3172,
+        edam:topic_3336,
+        edam:topic_3375,
+        edam:topic_3407 ;
+    sc:citation <https://doi.org/10.1021/ACS.JCIM.1C00628>,
+        "pubmed:34672553" ;
+    sc:description "Identifying Human Cytochrome P450 Inhibitors Using Multitask Learning and Molecular Fingerprint-Embedded Encoding." ;
+    sc:featureList edam:operation_0440,
+        edam:operation_2238,
+        edam:operation_3938 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "iCYP-MFE" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://103.130.219.193:5002" .
+
 <https://bio.tools/icytree> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0602,
@@ -248118,22 +254065,22 @@ Conotoxins are small peptide toxins which are rich in disulfide and have the uni
 
 <https://bio.tools/id-align> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ],
+            sc:additionalType "http://edamontology.org/data_0944" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Peptide mass fingerprint" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0944" ;
-            sc:name "Peptide mass fingerprint" ;
-            sc:sameAs "http://edamontology.org/data_0944" ] ;
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Mass spectrometry data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0944" ;
-            sc:name "Peptide mass fingerprint" ;
-            sc:sameAs "http://edamontology.org/data_0944" ],
+            sc:additionalType "http://edamontology.org/data_0944" ;
+            sc:encodingFormat "http://edamontology.org/format_3620" ;
+            sc:name "Peptide mass fingerprint" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:encodingFormat "http://edamontology.org/format_3620" ;
+            sc:name "Mass spectrometry data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3172 ;
     sc:description "Aligns metabolite data from multiple files to single spreadsheet." ;
@@ -248146,7 +254093,7 @@ Conotoxins are small peptide toxins which are rich in disulfide and have the uni
     sc:url "http://www.ce4csb.org/applications/idalign/idalign.html" .
 
 <https://bio.tools/id-plus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0121,
@@ -248168,7 +254115,7 @@ Copyright© 2017-2020,IPR Osaka Univ.""" ;
     sc:url "http://coco.protein.osaka-u.ac.jp/id-plus/" .
 
 <https://bio.tools/id-taxer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0605,
         edam:topic_0610,
@@ -248187,14 +254134,12 @@ Abstract High-throughput sequencing 16S rRNA gene surveys have enabled new insig
 
 <https://bio.tools/id_history_converter> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2610" ;
-            sc:name "Ensembl ID" ;
-            sc:sameAs "http://edamontology.org/data_2610" ] ;
+            sc:additionalType "http://edamontology.org/data_2610" ;
+            sc:name "Ensembl ID" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2610" ;
-            sc:name "Ensembl ID" ;
-            sc:sameAs "http://edamontology.org/data_2610" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2610" ;
+            sc:name "Ensembl ID" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3345 ;
     sc:citation <https://doi.org/10.1093/nar/gkv1157> ;
@@ -248213,7 +254158,7 @@ Abstract High-throughput sequencing 16S rRNA gene surveys have enabled new insig
     biotools:primaryContact "Andrew Yates" .
 
 <https://bio.tools/idacp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -248235,8 +254180,27 @@ Abstract High-throughput sequencing 16S rRNA gene surveys have enabled new insig
         "Windows" ;
     sc:url "http://mer.hc.mmh.org.tw/iDACP/" .
 
+<https://bio.tools/idam> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0634,
+        edam:topic_3174,
+        edam:topic_3315,
+        edam:topic_3360,
+        edam:topic_3941 ;
+    sc:citation <https://doi.org/10.1101/2021.09.13.460160> ;
+    sc:description "IDAM provides a framework for the identification of microbial disease-associated biomarkers based on metagenomic and metatranscriptomic data. The raw sequencing data (matched metagenomic and metatranscriptomic data) or the expression matrix is required. The output is gene modules consisting of gene and sample subsets." ;
+    sc:featureList edam:operation_0323,
+        edam:operation_2495,
+        edam:operation_3695 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "IDAM" ;
+    sc:operatingSystem "Linux" ;
+    sc:url "https://github.com/OSU-BMBL/IDAM" .
+
 <https://bio.tools/idba> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196 ;
     sc:citation <https://doi.org/10.1007/978-3-642-12683-3_28> ;
@@ -248252,18 +254216,16 @@ Abstract High-throughput sequencing 16S rRNA gene surveys have enabled new insig
 
 <https://bio.tools/idbases> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1097" ;
-            sc:name "Sequence accession (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1097" ],
+            sc:additionalType "http://edamontology.org/data_1025" ;
+            sc:name "Gene identifier" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1025" ;
-            sc:name "Gene identifier" ;
-            sc:sameAs "http://edamontology.org/data_1025" ] ;
+            sc:additionalType "http://edamontology.org/data_1097" ;
+            sc:name "Sequence accession (nucleic acid)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Sequence variations" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0634 ;
     sc:citation <https://doi.org/10.1002/humu.20405>,
@@ -248278,7 +254240,7 @@ Abstract High-throughput sequencing 16S rRNA gene surveys have enabled new insig
     sc:url "http://structure.bmc.lu.se/idbase/" .
 
 <https://bio.tools/idbp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0085,
         edam:topic_1317,
@@ -248297,7 +254259,7 @@ Abstract High-throughput sequencing 16S rRNA gene surveys have enabled new insig
     sc:url "http://idbps.tau.ac.il/" .
 
 <https://bio.tools/idbp-dep> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0078,
@@ -248316,7 +254278,7 @@ DNA-binding proteins play essential roles in many molecular functions and gene r
     sc:url "https://github.com/Zll-codeside/iDBP-DEP" .
 
 <https://bio.tools/idbps> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0654,
@@ -248332,20 +254294,40 @@ DNA-binding proteins play essential roles in many molecular functions and gene r
     sc:softwareHelp <http://idbps.tau.ac.il/FAQ.htm> ;
     sc:url "http://idbps.tau.ac.il/" .
 
+<https://bio.tools/idbsv> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0199,
+        edam:topic_0219,
+        edam:topic_3299 ;
+    sc:citation <https://doi.org/10.3389/FMED.2021.765249>,
+        "pmcid:PMC8710592",
+        "pubmed:34966754" ;
+    sc:description "An Open-Access Repository for Monitoring SARS-CoV-2 Variations and Evolution." ;
+    sc:featureList edam:operation_3208,
+        edam:operation_3225,
+        edam:operation_3227 ;
+    sc:isAccessibleForFree true ;
+    sc:name "IDbSV" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://IDbSV.medbiotech-lab.ma" .
+
 <https://bio.tools/idcalc> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1857" ;
-            sc:name "Atomic occupancy" ;
-            sc:sameAs "http://edamontology.org/data_1857" ],
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_2571" ;
+            sc:name "Protein sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
+            sc:additionalType "http://edamontology.org/data_1857" ;
+            sc:encodingFormat "http://edamontology.org/format_2035" ;
+            sc:name "Atomic occupancy" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_2269,
@@ -248362,14 +254344,14 @@ DNA-binding proteins play essential roles in many molecular functions and gene r
 
 <https://bio.tools/idconvert> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ] ;
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_3747" ;
+            sc:name "Peptide identification" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_3655" ;
+            sc:name "Peptide identification" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -248391,7 +254373,7 @@ DNA-binding proteins play essential roles in many molecular functions and gene r
     biotools:primaryContact "SourceForge team" .
 
 <https://bio.tools/idcov> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3293,
@@ -248406,7 +254388,7 @@ idCOV is a phylogenetic pipeline for quickly identifying the clades of SARS-CoV-
     sc:url "https://github.com/xz-stjude/idcov" .
 
 <https://bio.tools/iddb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0621,
@@ -248425,7 +254407,7 @@ Infertility Disease DataBase (IDDB) provides a versatile resource for genes, exp
     sc:url "http://mdl.shsmu.edu.cn/IDDB/" .
 
 <https://bio.tools/iddrra> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3047,
         edam:topic_3314,
@@ -248442,8 +254424,30 @@ Infertility Disease DataBase (IDDB) provides a versatile resource for genes, exp
     sc:url "https://3dmi.upatras.gr/IDDRRA" ;
     biotools:primaryContact "George C. Kagadis" .
 
+<https://bio.tools/ideafix> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0196,
+        edam:topic_3474,
+        edam:topic_3676 ;
+    sc:citation <https://doi.org/10.1093/NARGAB/LQAB092>,
+        "pmcid:PMC8557387",
+        "pubmed:34729472" ;
+    sc:description "A decision tree-based method for the refinement of variants in FFPE DNA sequencing data." ;
+    sc:featureList edam:operation_3192,
+        edam:operation_3227,
+        edam:operation_3675,
+        edam:operation_3695 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-2.0" ;
+    sc:name "Ideafix" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/mmaitenat/ideafix" .
+
 <https://bio.tools/ideal> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0601,
@@ -248465,7 +254469,7 @@ Infertility Disease DataBase (IDDB) provides a versatile resource for genes, exp
     biotools:primaryContact "Satoshi Fukuchi" .
 
 <https://bio.tools/ideal_expression> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3168,
@@ -248487,7 +254491,7 @@ Infertility Disease DataBase (IDDB) provides a versatile resource for genes, exp
     biotools:primaryContact "Federico Marini" .
 
 <https://bio.tools/ideal_rna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3168,
@@ -248508,8 +254512,31 @@ Infertility Disease DataBase (IDDB) provides a versatile resource for genes, exp
     sc:url "http://bioconductor.org/packages/release/bioc/html/ideal.html" ;
     biotools:primaryContact "Federico Marini" .
 
+<https://bio.tools/ideas> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library",
+        "Workflow" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0622,
+        edam:topic_3170,
+        edam:topic_3676 ;
+    sc:citation <https://doi.org/10.1186/S13059-022-02605-1>,
+        "pmcid:PMC8784862",
+        "pubmed:35073995" ;
+    sc:description "IDEAS (Individual level Differential Expression Analysis for Single cells) an R package for differential expression analysis using single cell RNA-seq data of multiple individuals." ;
+    sc:featureList edam:operation_2436,
+        edam:operation_3223,
+        edam:operation_3680 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "IDEAS" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/Sun-lab/ideas" .
+
 <https://bio.tools/ideepc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_3474,
@@ -248529,7 +254556,7 @@ Infertility Disease DataBase (IDDB) provides a versatile resource for genes, exp
     sc:url "https://github.com/hehew321/iDeepC" .
 
 <https://bio.tools/ideepmv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0659,
@@ -248550,7 +254577,7 @@ RNA-binding protein (RBP) is a class of proteins that bind to and accompany RNAs
     sc:url "http://www.csbio.sjtu.edu.cn/bioinf/iDeepMV" .
 
 <https://bio.tools/ideepsubmito> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0140,
@@ -248570,8 +254597,33 @@ RNA-binding protein (RBP) is a class of proteins that bind to and accompany RNAs
         "Windows" ;
     sc:url "https://github.com/houzl3416/iDeepSubMito" .
 
+<https://bio.tools/idenmd-nrf> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_3495" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "RNA sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0634,
+        edam:topic_0659,
+        edam:topic_3071 ;
+    sc:citation <https://doi.org/10.1093/BIB/BBAC224>,
+        "pubmed:35679537" ;
+    sc:description "Aa ranking framework for miRNA-disease association identification." ;
+    sc:featureList edam:operation_0463,
+        edam:operation_2421,
+        edam:operation_2422,
+        edam:operation_3792 ;
+    sc:isAccessibleForFree true ;
+    sc:name "idenMD-NRF" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <http://bliulab.net/idenMD-NRF/tutorial/> ;
+    sc:url "http://bliulab.net/idenMD-NRF/" .
+
 <https://bio.tools/identiflow> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3361,
@@ -248591,7 +254643,7 @@ You can install the IdentiFlow package with pip:.""" ;
     sc:url "http://github.com/GrossTor/IdentiFlow" .
 
 <https://bio.tools/identiflow-p> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3361,
@@ -248612,10 +254664,10 @@ The package is easy to use and we demonstrate its most relevant features in the
 
 <https://bio.tools/identpmp> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0121,
@@ -248639,7 +254691,7 @@ The package is easy to use and we demonstrate its most relevant features in the
     sc:url "http://identpmp.aielab.net/" .
 
 <https://bio.tools/ideoviz> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0097,
@@ -248658,7 +254710,7 @@ The package is easy to use and we demonstrate its most relevant features in the
     biotools:primaryContact "Shraddha Pai" .
 
 <https://bio.tools/idepi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0625,
@@ -248679,7 +254731,7 @@ The package is easy to use and we demonstrate its most relevant features in the
     biotools:primaryContact "Sergei L. Kosakovsky Pond" .
 
 <https://bio.tools/idhs-dasts> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3168,
@@ -248695,7 +254747,7 @@ Enter the query DNA sequences in FASTA format (Example):.""" ;
     sc:url "http://www.xdu-duan.cn/" .
 
 <https://bio.tools/idhs-deep> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0749,
@@ -248713,7 +254765,7 @@ Enter the query DNA sequences in FASTA format (Example):.""" ;
     biotools:primaryContact <https://orcid.org/0000-0001-6265-2862> .
 
 <https://bio.tools/idiogram> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0122,
@@ -248732,7 +254784,7 @@ Enter the query DNA sequences in FASTA format (Example):.""" ;
     biotools:primaryContact "Karl J. Dykema" .
 
 <https://bio.tools/idiographica> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0621,
@@ -248752,34 +254804,41 @@ Enter the query DNA sequences in FASTA format (Example):.""" ;
     sc:url "http://rtools.cbrc.jp/idiographica/" ;
     biotools:primaryContact "Kin T." .
 
-<https://bio.tools/idjournal> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3068,
-        edam:topic_3324,
-        edam:topic_3375 ;
-    sc:citation <https://doi.org/10.1093/OFID/OFZ360.2242>,
-        "pmcid:PMC6810476" ;
-    sc:description """2564. What Predicts Journal Publication Tier and Audience Engagement in the Infectious Diseases Literature? A Review of 146 Publications.
-
-IDJournal.Club - The ID Literature In Review.
-
-As always, feel free to share your thoughts by commenting on any of these blog posts, or reach out to me directly by email at contact.idjournalclub@gmail.com or via Twitter at @Cortes_Penfield .
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'Altmetric', 'SJR', 'SJR Altmetric', 'engagement'""" ;
-    sc:featureList edam:operation_0306,
-        edam:operation_3891 ;
-    sc:name "idjournal" ;
-    sc:url "http://www.idjournal.club" .
+<https://bio.tools/idirect> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workbench" ;
+    sc:applicationSubCategory edam:topic_0602,
+        edam:topic_0749,
+        edam:topic_2259,
+        edam:topic_3315,
+        edam:topic_3697 ;
+    sc:citation <https://doi.org/10.1073/PNAS.2109995119>,
+        "pmcid:PMC8764688",
+        "pubmed:34992138" ;
+    sc:description "iDIRECT (Inference of Direct and Indirect Relationships with Effective Copula-based Transitivity), for quantitatively inferring direct dependencies in association networks" ;
+    sc:featureList edam:operation_1781,
+        edam:operation_2437,
+        edam:operation_3629,
+        edam:operation_3925,
+        edam:operation_3928 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Other" ;
+    sc:name "iDIRECT" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/nxiao6gt/iDIRECT" .
 
 <https://bio.tools/idmappinganalysis> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0842" ;
-            sc:name "Identifier" ;
-            sc:sameAs "http://edamontology.org/data_0842" ] ;
+            sc:additionalType "http://edamontology.org/data_0842" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Identifier" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0091,
@@ -248800,14 +254859,14 @@ As always, feel free to share your thoughts by commenting on any of these blog p
 
 <https://bio.tools/idmappingretrieval> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0842" ;
-            sc:name "Identifier" ;
-            sc:sameAs "http://edamontology.org/data_0842" ] ;
+            sc:additionalType "http://edamontology.org/data_0842" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Identifier" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0842" ;
-            sc:name "Identifier" ;
-            sc:sameAs "http://edamontology.org/data_0842" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0842" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Identifier" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0091,
@@ -248828,7 +254887,7 @@ As always, feel free to share your thoughts by commenting on any of these blog p
         "Roger Day" .
 
 <https://bio.tools/idmil> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3174,
         edam:topic_3474,
@@ -248847,7 +254906,7 @@ As always, feel free to share your thoughts by commenting on any of these blog p
     sc:url "https://github.com/mrahma23/IDMIL" .
 
 <https://bio.tools/idminer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0602,
@@ -248866,8 +254925,32 @@ The broad spectrum of intellectual disability (ID) patients' clinical manifestat
     sc:name "IDminer" ;
     sc:url "http://218.4.234.74:3100/IDminer/" .
 
+<https://bio.tools/idna-abt> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "DNA sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0654,
+        edam:topic_3295,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAB677>,
+        "pubmed:34601568" ;
+    sc:description "A generic webserver for predicting DNA methylation sites" ;
+    sc:featureList edam:operation_0308,
+        edam:operation_0417,
+        edam:operation_3935 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "iDNA-ABT" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://server.wei-group.net/iDNA_ABT" .
+
 <https://bio.tools/idna-methyl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3053,
@@ -248885,7 +254968,7 @@ The broad spectrum of intellectual disability (ID) patients' clinical manifestat
     biotools:primaryContact "Xuan Xiao" .
 
 <https://bio.tools/idna4mc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2533,
         edam:topic_3295,
@@ -248903,7 +254986,7 @@ The broad spectrum of intellectual disability (ID) patients' clinical manifestat
         "Wei Chen" .
 
 <https://bio.tools/idna6ma-rice-dl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_0780,
@@ -248918,7 +255001,7 @@ The broad spectrum of intellectual disability (ID) patients' clinical manifestat
         "Liang Kong" .
 
 <https://bio.tools/idops> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0154,
@@ -248940,7 +255023,7 @@ The broad spectrum of intellectual disability (ID) patients' clinical manifestat
     sc:url "https://anaconda.org/GAMB-GO/idops" .
 
 <https://bio.tools/idp-seq2seq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0218,
@@ -248962,7 +255045,7 @@ The datasets used in this study can be downloaded from below links:.""" ;
     sc:url "http://bliulab.net/IDP-Seq2Seq/" .
 
 <https://bio.tools/idpgk> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -248982,7 +255065,7 @@ To facilitate this process, several tools have been proposed for the computation
     sc:url "http://mer.hc.mmh.org.tw/iDPGK/" .
 
 <https://bio.tools/idpo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Ontology" ;
     sc:applicationSubCategory edam:topic_3538 ;
     sc:citation <https://doi.org/10.1093/nar/gkab1082>,
@@ -249001,7 +255084,7 @@ To facilitate this process, several tools have been proposed for the computation
     biotools:primaryContact <https://orcid.org/0000-0003-4525-7793> .
 
 <https://bio.tools/idppiv-scm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -249015,8 +255098,55 @@ To facilitate this process, several tools have been proposed for the computation
     sc:name "iDPPIV-SCM" ;
     sc:url "http://camt.pythonanywhere.com/iDPPIV-SCM" .
 
+<https://bio.tools/idpr> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0121,
+        edam:topic_0123,
+        edam:topic_0154,
+        edam:topic_0736,
+        edam:topic_3538 ;
+    sc:citation <https://doi.org/10.1371/JOURNAL.PONE.0266929>,
+        "pmcid:PMC9015136",
+        "pubmed:35436286" ;
+    sc:description "A package for profiling and analyzing Intrinsically Disordered Proteins in R." ;
+    sc:featureList edam:operation_0470,
+        edam:operation_0474,
+        edam:operation_2574,
+        edam:operation_3904 ;
+    sc:isAccessibleForFree true ;
+    sc:license "LGPL-3.0" ;
+    sc:name "idpr" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://bioconductor.org/packages/release/bioc/manuals/idpr/man/idpr.pdf> ;
+    sc:url "https://bioconductor.org/packages/idpr/" .
+
+<https://bio.tools/idpsbind> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_3300,
+        edam:topic_3407,
+        edam:topic_3534,
+        edam:topic_3538 ;
+    sc:citation <https://doi.org/10.1186/S12860-022-00434-5>,
+        "pmcid:PMC9327236",
+        "pubmed:35883018" ;
+    sc:description "A repository of binding sites for intrinsically disordered proteins complexes with known 3D structures." ;
+    sc:featureList edam:operation_0470,
+        edam:operation_2464,
+        edam:operation_3904 ;
+    sc:isAccessibleForFree true ;
+    sc:name "IDPsBind" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://www.s-bioinformatics.cn/idpsbind/home/" .
+
 <https://bio.tools/idr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "The IDR (Irreproducible Discovery Rate) framework is a unified approach to measure the reproducibility of findings identified from replicate experiments and provide highly stable thresholds based on reproducibility." ;
     sc:featureList edam:operation_2238,
         edam:operation_3463 ;
@@ -249024,7 +255154,7 @@ To facilitate this process, several tools have been proposed for the computation
     sc:url "https://github.com/nboley/idr" .
 
 <https://bio.tools/idr2d> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0621,
@@ -249040,8 +255170,31 @@ Chromatin interaction data from protocols such as ChIA-PET, HiChIP and Hi-C prov
     sc:name "IDR2D" ;
     sc:url "https://idr2d.mit.edu" .
 
+<https://bio.tools/idrbp-el> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0099,
+        edam:topic_0128,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1109/TCBB.2021.3136905>,
+        "pubmed:34932484" ;
+    sc:description "Identifying DNA- and RNA- binding proteins based on hierarchical ensemble learning." ;
+    sc:featureList edam:operation_0420,
+        edam:operation_3900,
+        edam:operation_3901 ;
+    sc:isAccessibleForFree true ;
+    sc:name "iDRBP-EL" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://bliulab.net/iDRBP-EL" .
+
 <https://bio.tools/idrbp-ppct> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0128,
@@ -249057,7 +255210,7 @@ Chromatin interaction data from protocols such as ChIA-PET, HiChIP and Hi-C prov
     sc:url "http://bliulab.net/IDRBP-PPCT" .
 
 <https://bio.tools/idrbp_mmc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0078,
@@ -249075,22 +255228,22 @@ A new sequence-based computational predictor for identifying DNA-binding protein
 
 <https://bio.tools/idrem> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Gene expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ],
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Gene expression data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ],
+            sc:additionalType "http://edamontology.org/data_0954" ;
+            sc:encodingFormat "http://edamontology.org/format_3326" ;
+            sc:name "Database cross-mapping" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0954" ;
-            sc:name "Database cross-mapping" ;
-            sc:sameAs "http://edamontology.org/data_0954" ] ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Pathway or network" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "Pathway or network" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0602,
@@ -249113,7 +255266,7 @@ A new sequence-based computational predictor for identifying DNA-binding protein
     biotools:primaryContact "Jun Ding" .
 
 <https://bio.tools/idrmutpred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3168,
@@ -249133,8 +255286,34 @@ IDRMutPred is specifically trained on the IDR nsSNVs, and is specifically utiliz
     sc:name "IDRMutPred" ;
     sc:url "http://www.wdspdb.com/IDRMutPred" .
 
+<https://bio.tools/idrna-itf> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0099,
+        edam:topic_0128,
+        edam:topic_0154,
+        edam:topic_0749,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1093/BIB/BBAC236>,
+        "pubmed:35709747" ;
+    sc:description "Identifying DNA- and RNA-binding residues in proteins based on induction and transfer framework." ;
+    sc:featureList edam:operation_0321,
+        edam:operation_3901,
+        edam:operation_3902,
+        edam:operation_4009 ;
+    sc:isAccessibleForFree true ;
+    sc:name "iDRNA-ITF" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://bliulab.net/iDRNA-ITF" .
+
 <https://bio.tools/idrug> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0602,
@@ -249154,7 +255333,7 @@ iDrug is a computational pipeline to jointly predict novel drug-disease and drug
     sc:url "https://github.com/Case-esaC/iDrug" .
 
 <https://bio.tools/idrug-target> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0820,
@@ -249172,7 +255351,7 @@ iDrug is a computational pipeline to jointly predict novel drug-disease and drug
     biotools:primaryContact "Xuan Xiao" .
 
 <https://bio.tools/idrw> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2640,
@@ -249191,7 +255370,7 @@ iDRW is an integrative pathway activity inference method using directed random w
     sc:url "https://github.com/sykim122/iDRW" .
 
 <https://bio.tools/idseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0769,
@@ -249215,8 +255394,31 @@ IDseq is a hypothesis-free global software platform that helps scientists identi
     sc:softwareHelp <https://github.com/chanzuckerberg/idseq-dag/wiki> ;
     sc:url "https://idseq.net" .
 
+<https://bio.tools/idsl-ipa> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0121,
+        edam:topic_0621,
+        edam:topic_3172,
+        edam:topic_3520 ;
+    sc:citation <https://doi.org/10.1021/ACS.JPROTEOME.2C00120>,
+        "pmcid:PMC9177784",
+        "pubmed:35579321" ;
+    sc:description "IDSL.IPA Characterizes the Organic Chemical Space in Untargeted LC/HRMS Data Sets." ;
+    sc:featureList edam:operation_3215,
+        edam:operation_3628,
+        edam:operation_3633 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "IDSL-IPA" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://cran.r-project.org/web/packages/IDSL.IPA/IDSL.IPA.pdf> ;
+    sc:url "https://ipa.idsl.me" .
+
 <https://bio.tools/idssim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0634,
@@ -249234,7 +255436,7 @@ BACKGROUND:It has been widely accepted that long non-coding RNAs (lncRNAs) play
     sc:url "https://github.com/CDMB-lab/IDSSIM" .
 
 <https://bio.tools/idt_scitools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0099,
@@ -249256,7 +255458,7 @@ BACKGROUND:It has been widely accepted that long non-coding RNAs (lncRNAs) play
     sc:url "http://www.idtdna.com/SciTools/SciTools.aspx" .
 
 <https://bio.tools/idtarget> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0140,
         edam:topic_0154,
@@ -249279,7 +255481,7 @@ BACKGROUND:It has been widely accepted that long non-coding RNAs (lncRNAs) play
     biotools:primaryContact "Jung-Hsin Lin" .
 
 <https://bio.tools/idxpr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3063,
@@ -249301,8 +255503,30 @@ The proposed open-source dxpr package is a software tool aimed at expediting an
         "Windows" ;
     sc:url "https://github.com/DHLab-TSENG/dxpr" .
 
+<https://bio.tools/ie-vnet> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_3334,
+        edam:topic_3444,
+        edam:topic_3452,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.3389/FNEUR.2022.663200>,
+        "pmcid:PMC9130477",
+        "pubmed:35645963" ;
+    sc:description "Deep Learning-Based Segmentation of the Inner Ear's Total Fluid Space." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3443,
+        edam:operation_3799 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Apache-2.0" ;
+    sc:name "IE-Vnet" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/pydsgz/IEVNet" .
+
 <https://bio.tools/iedb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0621,
@@ -249324,7 +255548,7 @@ The proposed open-source dxpr package is a software tool aimed at expediting an
     biotools:primaryContact "IEDB Support" .
 
 <https://bio.tools/iedb-3d> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0621,
@@ -249345,7 +255569,7 @@ The proposed open-source dxpr package is a software tool aimed at expediting an
     biotools:primaryContact "Julia Ponomarenko" .
 
 <https://bio.tools/iedb-ar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0082,
@@ -249365,7 +255589,7 @@ The proposed open-source dxpr package is a software tool aimed at expediting an
     biotools:primaryContact "IEDB Support" .
 
 <https://bio.tools/iedb-v2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_3324,
@@ -249387,7 +255611,7 @@ Free resource for searching and exporting immune epitopes. Includes more than 95
     sc:url "http://www.iedb.org/" .
 
 <https://bio.tools/iedea> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0605,
         edam:topic_2269,
@@ -249408,7 +255632,7 @@ IeDEA is an international research consortium established in 2006 by the Nationa
     sc:url "https://www.iedea.org/" .
 
 <https://bio.tools/ielm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0128,
@@ -249432,7 +255656,7 @@ IeDEA is an international research consortium established in 2006 by the Nationa
         "Toby J. Gibson" .
 
 <https://bio.tools/ielu> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3334,
         edam:topic_3444,
@@ -249452,7 +255676,7 @@ IeDEA is an international research consortium established in 2006 by the Nationa
     biotools:primaryContact <http://orcid.org/0000-0002-5309-1036> .
 
 <https://bio.tools/iembase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application",
         "Web service" ;
@@ -249477,7 +255701,7 @@ IeDEA is an international research consortium established in 2006 by the Nationa
     biotools:primaryContact "Prof. Dr. Nenad Blau" .
 
 <https://bio.tools/ienhancer-kl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3474 ;
@@ -249491,7 +255715,7 @@ An enhancer is a short region of DNA with the ability to recruit transcription f
     sc:url "https://github.com/Not-so-middle/iEnhancer-KL.git" .
 
 <https://bio.tools/ienhancer-rd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3474,
@@ -249509,7 +255733,7 @@ An enhancer is a short region of DNA with the ability to recruit transcription f
     sc:url "https://github.com/YangHuan639/iEnhancer-RD" .
 
 <https://bio.tools/ienhancer-xg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3295,
@@ -249528,14 +255752,12 @@ repDNA (http://bioinformatics.hitsz.edu.cn/repDNA/).""" ;
 
 <https://bio.tools/iep> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2886" ;
-            sc:name "Protein sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2886" ] ;
+            sc:additionalType "http://edamontology.org/data_2886" ;
+            sc:name "Protein sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1528" ;
-            sc:name "Protein isoelectric point" ;
-            sc:sameAs "http://edamontology.org/data_1528" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1528" ;
+            sc:name "Protein isoelectric point" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0123 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -249565,7 +255787,7 @@ repDNA (http://bioinformatics.hitsz.edu.cn/repDNA/).""" ;
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/iep.html" .
 
 <https://bio.tools/if-abc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0130,
@@ -249586,8 +255808,29 @@ repDNA (http://bioinformatics.hitsz.edu.cn/repDNA/).""" ;
     sc:url "https://www.mathworks.com/matlabcentral/fileexchange/50863-codes-of-abc-and-if-abc-algorithms-for-protein-structure-optimization-using-off-lattice-model" ;
     biotools:primaryContact "Li Bai" .
 
+<https://bio.tools/ifcnv> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0634,
+        edam:topic_3168,
+        edam:topic_3474,
+        edam:topic_3512,
+        edam:topic_3958 ;
+    sc:citation <https://doi.org/10.1101/2022.01.03.474771> ;
+    sc:description "A novel isolation-forest-based package to detect copy number variations from various NGS datasets." ;
+    sc:featureList edam:operation_3359,
+        edam:operation_3435,
+        edam:operation_3961 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "ifCNV" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/SimCab-CHU/ifCNV" .
+
 <https://bio.tools/ifealid> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0602,
@@ -249605,7 +255848,7 @@ repDNA (http://bioinformatics.hitsz.edu.cn/repDNA/).""" ;
     sc:url "https://ifealid.cebitec.uni-bielefeld.de" .
 
 <https://bio.tools/ifeature> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
@@ -249623,12 +255866,37 @@ repDNA (http://bioinformatics.hitsz.edu.cn/repDNA/).""" ;
     biotools:primaryContact "Jiangning Song",
         "Zhen Chen" .
 
+<https://bio.tools/ifeatureomega> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application",
+        "Workbench" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0659,
+        edam:topic_2258,
+        edam:topic_3047,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAC351>,
+        "pmcid:PMC9252729",
+        "pubmed:35524557" ;
+    sc:description "iFeatureOmega is a comprehensive platform for generating, analyzing and visualizing more than 170 representations for biological sequences, 3D structures and ligands." ;
+    sc:featureList edam:operation_0224,
+        edam:operation_0337,
+        edam:operation_3891,
+        edam:operation_3937 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "iFeatureOmega" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://ifeatureomega.erc.monash.edu" .
+
 <https://bio.tools/ifindcpcli> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0950" ;
-            sc:name "Mathematical model" ;
-            sc:sameAs "http://edamontology.org/data_0950" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0950" ;
+            sc:encodingFormat "http://edamontology.org/format_2585" ;
+            sc:name "Mathematical model" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0602,
@@ -249653,8 +255921,36 @@ findCPcli takes as input an SBML files of genome-scale models, and provides as o
     sc:softwareHelp <https://findcpcli.readthedocs.io/en/latest/> ;
     sc:url "https://github.com/findCP/findCPcli" .
 
+<https://bio.tools/ifit> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0821 ;
+    sc:citation <https://doi.org/10.17344/ACSI.2022.7359>,
+        "pubmed:35861063" ;
+    sc:description "An automated web tool for determining enzyme-kinetic parameters based on the high-curvature region of progress curves." ;
+    sc:featureList edam:operation_0334 ;
+    sc:isAccessibleForFree true ;
+    sc:name "iFIT" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://www.i-fit.si" .
+
+<https://bio.tools/ifnepitope> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:description "This web server is developed for users working in the field of vaccine design. This server allows users to predict and design IFN-gamma inducing peptides. It have following three modules." ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "ifnepitope" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/ifnepitope/index.php> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/ifnepitope/index.php" .
+
 <https://bio.tools/ifoldrna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0176,
@@ -249667,7 +255963,7 @@ findCPcli takes as input an SBML files of genome-scale models, and provides as o
     sc:url "http://troll.med.unc.edu/ifoldrna.v2/index.php" .
 
 <https://bio.tools/iform> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0749,
@@ -249685,7 +255981,7 @@ findCPcli takes as input an SBML files of genome-scale models, and provides as o
     biotools:primaryContact "Wenjie Shu" .
 
 <https://bio.tools/ifuse> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0114,
         edam:topic_0622,
@@ -249705,7 +256001,7 @@ findCPcli takes as input an SBML files of genome-scale models, and provides as o
     biotools:primaryContact "Support" .
 
 <https://bio.tools/igb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0092 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btp472> ;
@@ -249717,7 +256013,7 @@ findCPcli takes as input an SBML files of genome-scale models, and provides as o
     sc:url "http://bioviz.org/igb/index.html" .
 
 <https://bio.tools/igblast> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0196,
@@ -249740,14 +256036,14 @@ findCPcli takes as input an SBML files of genome-scale models, and provides as o
 
 <https://bio.tools/igc> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Gene expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ] ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_2058" ;
+            sc:name "Gene expression data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1669" ;
-            sc:name "P-value" ;
-            sc:sameAs "http://edamontology.org/data_1669" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1669" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "P-value" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -249769,7 +256065,7 @@ findCPcli takes as input an SBML files of genome-scale models, and provides as o
     biotools:primaryContact "Liang-Bo Wang" .
 
 <https://bio.tools/igd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0622,
@@ -249788,7 +256084,7 @@ Databases of large-scale genome projects now contain thousands of genomic interv
     sc:url "https://github.com/databio/IGD" .
 
 <https://bio.tools/igdd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0634,
@@ -249811,18 +256107,16 @@ Databases of large-scale genome projects now contain thousands of genomic interv
 
 <https://bio.tools/igdiscover> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3496" ;
-            sc:name "RNA sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_3496" ] ;
+            sc:additionalType "http://edamontology.org/data_3496" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "RNA sequence (raw)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0928" ;
-            sc:name "Gene expression profile" ;
-            sc:sameAs "http://edamontology.org/data_0928" ],
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:name "DNA sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "DNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0928" ;
+            sc:name "Gene expression profile" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0097 ;
     sc:citation <https://doi.org/10.1038/ncomms13642> ;
@@ -249839,7 +256133,7 @@ Databases of large-scale genome projects now contain thousands of genomic interv
     sc:url "http://igdiscover.se/" .
 
 <https://bio.tools/igemrna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3170,
@@ -249862,7 +256156,7 @@ Databases of large-scale genome projects now contain thousands of genomic interv
     sc:url "https://github.com/BigDataInSilicoBiologyGroup/IgemRNA" .
 
 <https://bio.tools/iges> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0625,
@@ -249880,7 +256174,7 @@ Databases of large-scale genome projects now contain thousands of genomic interv
         "Zongben X" .
 
 <https://bio.tools/igg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3053,
@@ -249896,8 +256190,26 @@ Databases of large-scale genome projects now contain thousands of genomic interv
     sc:softwareVersion "3.0" ;
     sc:url "http://statgenpro.psychiatry.hku.hk/limx/igg/" .
 
+<https://bio.tools/iggbreak> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:citation <https://doi.org/10.3389/FGENE.2021.774846>,
+        "pmcid:PMC8593043",
+        "pubmed:34795698" ;
+    sc:description "An implementation of scale functions for setting axis breaks of a 'gg' plot." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3435 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Artistic-2.0" ;
+    sc:name "iggbreak" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://cran.r-project.org/web/packages/ggbreak/ggbreak.pdf> ;
+    sc:url "https://CRAN.R-project.org/package=ggbreak" .
+
 <https://bio.tools/iggeneusage> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_2269,
@@ -249913,8 +256225,18 @@ Decoding the properties of immune repertoires is key in understanding the respon
     sc:name "IgGeneUsage" ;
     sc:url "https://bioconductor.org/packages/IgGeneUsage/" .
 
+<https://bio.tools/igidiva> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Desktop application" ;
+    sc:description "The Immunoglobulin Intraclonal Diversification Analysis tool (IgIDivA) offers the opportunity for an in-depth analysis of high-throughput sequencing data, with the scope of studying the intraclona diversification process through the identification of the somatic hypermutations that take place within the IGV gene region, the detailed characterization of their connections, the establishment of the mutational pathways and the calculation of metrics that allow the objective determination of the level of ID in a sample, together with statistical analysis for the comparison of different features of the ID level for different groups of samples." ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "IgIDivA" ;
+    sc:softwareVersion "0.9" ;
+    sc:url "https://github.com/laurazara/IgIDivA" .
+
 <https://bio.tools/igipt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0654,
@@ -249933,7 +256255,7 @@ Decoding the properties of immune repertoires is key in understanding the respon
         "Ruchi Jain" .
 
 <https://bio.tools/igliosub> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3173,
@@ -249956,7 +256278,7 @@ Decoding the properties of immune repertoires is key in understanding the respon
     sc:url "https://github.com/mensenyat/iGlioSub" .
 
 <https://bio.tools/iglu> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3068 ;
     sc:citation <https://doi.org/10.1101/2020.09.28.310482> ;
@@ -249973,8 +256295,27 @@ Interpreting Glucose Data from Continuous Glucose Monitors.""" ;
     sc:name "iglu" ;
     sc:url "https://github.com/irinagain/iglu" .
 
+<https://bio.tools/igmat> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0160,
+        edam:topic_0621,
+        edam:topic_0769,
+        edam:topic_3168 ;
+    sc:citation <https://doi.org/10.1101/2021.09.22.461368> ;
+    sc:description "IgMAT is a tool for the automatic discrimination and annotation of antibody sequences, specifically designed to be integrated into analysis pipelines or being used as a cli tool. IgMAT is highly customizable, allowing the addition of custom antibody sequences datasets and generating a range of output formats including a bed file of FR and CDR coordinates allowing simple downstream analysis on individual regions." ;
+    sc:featureList edam:operation_0260,
+        edam:operation_0361 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "IgMAT" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/TPI-Immunogenetics/igmat" .
+
 <https://bio.tools/ignomonicm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_0621,
@@ -249994,7 +256335,7 @@ Interpreting Glucose Data from Continuous Glucose Monitors.""" ;
     biotools:primaryContact "Enrique Morales-Bojórquez" .
 
 <https://bio.tools/igpcr-drug> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0202,
@@ -250014,7 +256355,7 @@ Interpreting Glucose Data from Continuous Glucose Monitors.""" ;
     biotools:primaryContact "Support" .
 
 <https://bio.tools/igpred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0623,
@@ -250033,7 +256374,7 @@ Interpreting Glucose Data from Continuous Glucose Monitors.""" ;
     biotools:primaryContact "Hao Lin" .
 
 <https://bio.tools/igrepertoireconstructor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0623,
         edam:topic_0804,
@@ -250051,7 +256392,7 @@ Interpreting Glucose Data from Continuous Glucose Monitors.""" ;
     biotools:primaryContact "Yana Safonova" .
 
 <https://bio.tools/igsimulator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0623,
         edam:topic_0804,
@@ -250067,8 +256408,26 @@ Interpreting Glucose Data from Continuous Glucose Monitors.""" ;
     sc:url "http://yana-safonova.github.io/ig_simulator/" ;
     biotools:primaryContact "Yana Safonova" .
 
+<https://bio.tools/igt> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_2275,
+        edam:topic_3336,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1093/BIB/BBAC162>,
+        "pubmed:35514186" ;
+    sc:description "Intermolecular Graph Transformer (IGT) employs a dedicated attention mechanism to model intermolecular information with a three-way Transformer-based architecture." ;
+    sc:featureList edam:operation_2492,
+        edam:operation_3899,
+        edam:operation_3938 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "IGT" ;
+    sc:url "https://github.com/microsoft/IGT-Intermolecular-Graph-Transformer" .
+
 <https://bio.tools/igv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0092,
@@ -250091,7 +256450,7 @@ Interpreting Glucose Data from Continuous Glucose Monitors.""" ;
         "IGV support" .
 
 <https://bio.tools/igviewer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3320,
         edam:topic_3517 ;
@@ -250118,7 +256477,7 @@ To create an igv.js browser supply a container div and an initial configuration
     sc:url "https://igv.org/app" .
 
 <https://bio.tools/igvr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070 ;
     sc:description "Access to igv.js, the Integrative Genomics Viewer running in a web browser." ;
@@ -250135,7 +256494,7 @@ To create an igv.js browser supply a container div and an initial configuration
     biotools:primaryContact "Paul Shannon" .
 
 <https://bio.tools/igvtools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Plug-in" ;
     sc:applicationSubCategory edam:topic_0080 ;
@@ -250154,7 +256513,7 @@ To create an igv.js browser supply a container div and an initial configuration
     sc:url "https://software.broadinstitute.org/software/igv/igvtools" .
 
 <https://bio.tools/ihec-raac> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0821,
@@ -250174,8 +256533,30 @@ Identifying the 2-level antimicrobial peptides using reduced acid amino composit
     sc:name "IHEC-RAAC" ;
     sc:url "http://bioinfor.imu.edu.cn/ihecraac" .
 
+<https://bio.tools/ihmnbs> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_3125,
+        edam:topic_3169,
+        edam:topic_3295,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC489>,
+        "pubmed:35809058" ;
+    sc:description "Identifying modifications on DNA-bound histones with joint deep learning of multiple binding sites in DNA sequence." ;
+    sc:featureList edam:operation_0417,
+        edam:operation_3903,
+        edam:operation_3927 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "iHMnBS" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/lennylv/iHMnBS" .
+
 <https://bio.tools/ihnlncsim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -250197,7 +256578,7 @@ IHNLncSim is a freely and reliable computational model can calculate functional
     sc:url "http://www.lirmed.com/ihnlncsim" .
 
 <https://bio.tools/ihop> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0218,
@@ -250216,7 +256597,7 @@ IHNLncSim is a freely and reliable computational model can calculate functional
     sc:url "http://www.ihop-net.org/UniPub/iHOP/" .
 
 <https://bio.tools/ihop_ws> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_3068,
         edam:topic_3473 ;
@@ -250233,7 +256614,7 @@ IHNLncSim is a freely and reliable computational model can calculate functional
     sc:url "http://ws.bioinfo.cnio.es/iHOP/" .
 
 <https://bio.tools/ihp-ping> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0605,
@@ -250256,7 +256637,7 @@ IHP-PING provides a flexible python package, which extracts and integrates heter
     sc:url "http://web.cbio.uct.ac.za/ITGOM/post-analysis-tools/ihp-ping-dev/" .
 
 <https://bio.tools/ihrw> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0208,
@@ -250269,7 +256650,7 @@ IHP-PING provides a flexible python package, which extracts and integrates heter
     biotools:primaryContact "Guiying Yan" .
 
 <https://bio.tools/ihs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3056 ;
     sc:citation <https://doi.org/10.1371/journal.pbio.0040072>,
@@ -250284,7 +256665,7 @@ IHP-PING provides a flexible python package, which extracts and integrates heter
     sc:url "http://coruscant.itmat.upenn.edu/whamm/ihs.html" .
 
 <https://bio.tools/ihsp-pseraaac> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0121,
@@ -250302,7 +256683,7 @@ IHP-PING provides a flexible python package, which extracts and integrates heter
     biotools:primaryContact "Hao Lin" .
 
 <https://bio.tools/iht> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2885,
@@ -250324,7 +256705,7 @@ IHP-PING provides a flexible python package, which extracts and integrates heter
     sc:url "https://github.com/OpenMendel/MendelIHT.jl" .
 
 <https://bio.tools/ihw> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2269 ;
     sc:author <http://orcid.org/0000-0002-0474-2218> ;
@@ -250344,7 +256725,7 @@ IHP-PING provides a flexible python package, which extracts and integrates heter
     sc:url "http://bioconductor.org/packages/IHW/" .
 
 <https://bio.tools/ihyd-pseaac> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0154 ;
@@ -250361,8 +256742,78 @@ IHP-PING provides a flexible python package, which extracts and integrates heter
     sc:softwareHelp <http://app.aporc.org/iHyd-PseAAC/ReadMe.html> ;
     sc:url "http://app.aporc.org/iHyd-PseAAC/" .
 
+<https://bio.tools/ihypoxia> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1009" ;
+            sc:name "Protein name" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2299" ;
+            sc:name "Gene name" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2291" ;
+            sc:name "UniProt ID" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1033" ;
+            sc:name "Ensembl gene ID" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0601,
+        edam:topic_0621,
+        edam:topic_2640,
+        edam:topic_3500 ;
+    sc:citation <https://doi.org/10.1101/2021.10.16.464637> ;
+    sc:description "An integrative database of the expression dynamics of proteins in response to hypoxia in animals." ;
+    sc:featureList edam:operation_0417,
+        edam:operation_2476,
+        edam:operation_3630 ;
+    sc:isAccessibleForFree true ;
+    sc:name "iHypoxia" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://ihypoxia.omicsbio.info" .
+
+<https://bio.tools/iifdti> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_3336,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC485>,
+        "pubmed:35801934" ;
+    sc:description "Predicting drug-target interactions through interactive and independent features based on attention mechanism." ;
+    sc:featureList edam:operation_0269,
+        edam:operation_3937,
+        edam:operation_4009 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "IIFDTI" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/czjczj/IIFDTI" .
+
+<https://bio.tools/iirtplay> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:citation <https://doi.org/10.1177/0146621620921247>,
+        "pmcid:PMC7495796",
+        "pubmed:34565935" ;
+    sc:description "An R Package for Online Item Calibration, Scoring, Evaluation of Model Fit, and Useful Functions for Unidimensional IRT." ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "iirtplay" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://cran.r-project.org/web/packages/irtplay/irtplay.pdf>,
+        <https://www.rdocumentation.org/packages/irtplay/versions/1.6.3/topics/irtplay-package> ;
+    sc:url "https://github.com/cran/irtplay" .
+
 <https://bio.tools/iis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0128,
@@ -250383,8 +256834,29 @@ IHP-PING provides a flexible python package, which extracts and integrates heter
     sc:url "http://bioinfo03.ibi.unicamp.br/lnbio/IIS2/" ;
     biotools:primaryContact "Support" .
 
+<https://bio.tools/ijoq> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0621,
+        edam:topic_3315,
+        edam:topic_3382 ;
+    sc:citation <https://doi.org/10.3389/FCIMB.2022.865528>,
+        "pmcid:PMC9230243",
+        "pubmed:35755841" ;
+    sc:description "Dynamic Python-Based Method Provides Quantitative Analysis of Intercellular Junction Organization During S. pneumoniae Infection of the Respiratory Epithelium." ;
+    sc:featureList edam:operation_3435,
+        edam:operation_3443,
+        edam:operation_3799 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "IJOQ" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/DevonsMo/IJOQ" .
+
 <https://bio.tools/ikap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0601,
@@ -250401,7 +256873,7 @@ IHP-PING provides a flexible python package, which extracts and integrates heter
     biotools:primaryContact "Marcel Mischnik" .
 
 <https://bio.tools/ikap_cells> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_2229,
@@ -250424,7 +256896,7 @@ Note: IKAP will, by default, regress out the percentage of mitochondrial gene co
     sc:url "https://github.com/NHLBI-BCB/IKAP" .
 
 <https://bio.tools/ikaptive> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
@@ -250453,7 +256925,7 @@ BLAST for all known locus nucleotide sequences (using blastn) to identify the be
     sc:url "https://github.com/katholt/Kaptive" .
 
 <https://bio.tools/ikernint> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3168,
         edam:topic_3174,
@@ -250474,7 +256946,7 @@ kernInt uses the kernel framework to unify supervised and unsupervised microbiom
     sc:url "https://github.com/elies-ramon/kernInt" .
 
 <https://bio.tools/ikmc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0634,
@@ -250495,8 +256967,31 @@ kernInt uses the kernel framework to unify supervised and unsupervised microbiom
     sc:url "http://www.knockoutmouse.org" ;
     biotools:primaryContact "Martin Ringwald" .
 
+<https://bio.tools/il-13pred> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_2229,
+        edam:topic_3400 ;
+    sc:citation <https://doi.org/10.1101/2021.09.19.460950> ;
+    sc:description "Prediction of Interleukin-13 inducing peptides." ;
+    sc:featureList edam:operation_0252,
+        edam:operation_0416 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "IL-13Pred" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/il13pred/help.php#predict> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/il13pred/" .
+
 <https://bio.tools/il-6pred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0634,
@@ -250522,8 +257017,39 @@ Welcome to the Dataset Page of IL-6Pred.""" ;
     sc:name "IL-6Pred" ;
     sc:url "https://webs.iiitd.edu.in/raghava/il6pred/" .
 
+<https://bio.tools/il10pred> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:citation <https://doi.org/10.1038/srep42851>,
+        "pmcid:PMC5314457",
+        "pubmed:28211521" ;
+    sc:description "Prediction of Interleukin-10 inducing peptides" ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "il10pred" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/il10pred/index.html> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/il10pred/index.html" .
+
+<https://bio.tools/il13pred> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:citation <https://doi.org/10.1016/j.compbiomed.2022.105297>,
+        "pubmed:35152041" ;
+    sc:description "IL-13Pred: Prediction of Interleukin-13 inducing peptides" ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "il13pred" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/il13pred/> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/il13pred/" .
+
 <https://bio.tools/il2pred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -250542,20 +257068,84 @@ Welcome to the Dataset Page of IL-6Pred.""" ;
         "Windows" ;
     sc:url "https://webs.iiitd.edu.in/raghava/il2pred/" .
 
+<https://bio.tools/il4pred> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:citation <https://doi.org/10.1155/2013/263952>,
+        "pubmed:263952" ;
+    sc:description "IL4predIn Silico Platform for Designing and Discovering of Interleukin-4 inducing peptides" ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "il4pred" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/il4pred/index.php> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/il4pred/index.php" .
+
+<https://bio.tools/il5pred> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:description "IL5pred is developed for the prediction of IL5 inducing peptides. Interleukin-5 (IL-5) is one of the key cytokines released by several cellular elements, including T-helper 2 cells, mast cells, Type-2 innate lymphoid cells, basophils and eosinophils." ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "il5pred" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/il5pred/index.html> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/il5pred/index.html" .
+
+<https://bio.tools/il6pred> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:citation <https://doi.org/10.1093/bib/bbaa259> ;
+    sc:description "Prediction of Interlukin-6 inducing peptides" ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "il6pred" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/il6pred/index.html> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/il6pred/index.html" .
+
+<https://bio.tools/ilaminargenevis> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0099,
+        edam:topic_0769,
+        edam:topic_3170,
+        edam:topic_3304,
+        edam:topic_3308 ;
+    sc:citation <https://doi.org/10.3389/FNINF.2022.753770>,
+        "pmcid:PMC8907970",
+        "pubmed:35281717" ;
+    sc:description "LaminaRGeneVis: a tool to visualize a tool to visualize gene expression across the laminar architecture of the human neocortex." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_0337,
+        edam:operation_3463 ;
+    sc:license "Not licensed" ;
+    sc:name "iLaminaRGeneVis" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://ethanhkim.shinyapps.io/laminargenevis/" .
+
 <https://bio.tools/ilastik> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ] ;
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3591" ;
+            sc:name "Image" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ],
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3591" ;
+            sc:name "Image" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3344,
         edam:topic_3474 ;
@@ -250574,7 +257164,7 @@ Welcome to the Dataset Page of IL-6Pred.""" ;
     sc:url "https://www.ilastik.org/index.html" .
 
 <https://bio.tools/ilbe> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_0804 ;
@@ -250596,7 +257186,7 @@ Retrieval Job IDInput your job id here (e.g. 20180602221946).""" ;
     sc:url "http://kurata14.bio.kyutech.ac.jp/iLBE/" .
 
 <https://bio.tools/ilbind> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -250615,7 +257205,7 @@ Retrieval Job IDInput your job id here (e.g. 20180602221946).""" ;
     biotools:primaryContact "Lukasz Kurgan" .
 
 <https://bio.tools/ildgdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -250633,7 +257223,7 @@ ILDGDB is a manually curated database that provides comprehensive experimentally
     sc:url "http://ildgdb.org/" .
 
 <https://bio.tools/ilearnplus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -250655,7 +257245,7 @@ ILDGDB is a manually curated database that provides comprehensive experimentally
         "Quanzhi Zhao" .
 
 <https://bio.tools/ilee> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_2229,
@@ -250671,8 +257261,30 @@ ILDGDB is a manually curated database that provides comprehensive experimentally
     biotools:primaryContact <https://orcid.org/0000-0002-7929-4333>,
         <https://orcid.org/0000-0003-3919-3543> .
 
+<https://bio.tools/ilipiddyn> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0153,
+        edam:topic_0176,
+        edam:topic_0820,
+        edam:topic_2229,
+        edam:topic_3407 ;
+    sc:citation <https://doi.org/10.1016/J.CSBJ.2022.06.054>,
+        "pmcid:PMC9283888",
+        "pubmed:35860415" ;
+    sc:description "A computational microscope to scrutinize membrane properties at the organelle-level" ;
+    sc:featureList edam:operation_0244,
+        edam:operation_2476,
+        edam:operation_2489 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "iLipidDyn" ;
+    sc:operatingSystem "Linux",
+        "Mac" ;
+    sc:url "https://github.com/ELELAB/LipidDyn" .
+
 <https://bio.tools/iliski> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3068,
@@ -250689,7 +257301,7 @@ ILDGDB is a manually curated database that provides comprehensive experimentally
     sc:url "https://gitlab.com/AliK_A/iliski" .
 
 <https://bio.tools/illumina> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3168,
@@ -250705,7 +257317,7 @@ ILDGDB is a manually curated database that provides comprehensive experimentally
     sc:url "http://bioinf.wehi.edu.au/illumina/index.html" .
 
 <https://bio.tools/illuminaio> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -250727,7 +257339,7 @@ ILDGDB is a manually curated database that provides comprehensive experimentally
     biotools:primaryContact <http://orcid.org/0000-0003-0086-0687> .
 
 <https://bio.tools/illuminate> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622 ;
     sc:description "Analytics toolkit in Python for Illumina HiSeq and MiSeq metrics." ;
@@ -250740,7 +257352,7 @@ ILDGDB is a manually curated database that provides comprehensive experimentally
     biotools:primaryContact "Naomi Most" .
 
 <https://bio.tools/illuminator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0102 ;
     sc:citation "pubmed:21621601" ;
@@ -250753,7 +257365,7 @@ ILDGDB is a manually curated database that provides comprehensive experimentally
     biotools:primaryContact "Ian Carr" .
 
 <https://bio.tools/ilm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0097,
@@ -250771,8 +257383,25 @@ ILDGDB is a manually curated database that provides comprehensive experimentally
     sc:name "ILM" ;
     sc:url "http://cic.cs.wustl.edu/RNA/" .
 
+<https://bio.tools/ilncda-ltr> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0634,
+        edam:topic_0659 ;
+    sc:citation <https://doi.org/10.1016/J.COMPBIOMED.2022.105605>,
+        "pubmed:35594681" ;
+    sc:description "A Learning to Rank (LTR)-based method called iLncDA-LTR to predict diseases related with newly detected lncRNAs" ;
+    sc:featureList edam:operation_2422 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "iLncDA-LTR" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://bliulab.net/iLncDA-LTR/" .
+
 <https://bio.tools/ilncrnadis-fb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0659,
@@ -250788,7 +257417,7 @@ A new predictor for identifying lncRNA-disease associations by fusing biological
     sc:url "http://bliulab.net/iLncRNAdis-FB/" .
 
 <https://bio.tools/iloc-cell> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0623,
@@ -250804,12 +257433,36 @@ A new predictor for identifying lncRNA-disease associations by fusing biological
     sc:url "http://www.jci-bioinfo.cn/iLoc-Hum" ;
     biotools:primaryContact "Xuan Xiao" .
 
+<https://bio.tools/iloci> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_0196,
+        edam:topic_0621,
+        edam:topic_0622,
+        edam:topic_3170 ;
+    sc:citation <https://doi.org/10.1093/nargab/lqac013>,
+        "pmcid:PMC8862717",
+        "pubmed:35211671" ;
+    sc:description "Robust evaluation of genome content and organization for provisional and mature genome assemblies." ;
+    sc:featureList edam:operation_0362,
+        edam:operation_0525,
+        edam:operation_3431 ;
+    sc:isAccessibleForFree true ;
+    sc:license "ISC" ;
+    sc:name "iLoci" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://aegean.readthedocs.io/en/stable/> ;
+    sc:url "http://brendelgroup.github.io/AEGeAn/" .
+
 <https://bio.tools/iloops> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2886" ;
-            sc:name "Protein sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2886" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2886" ;
+            sc:encodingFormat "http://edamontology.org/format_1963" ;
+            sc:name "Protein sequence record" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API" ;
     sc:applicationSubCategory edam:topic_2259 ;
     sc:author <http://orcid.org/0000-0002-6279-2483> ;
@@ -250828,7 +257481,7 @@ A new predictor for identifying lncRNA-disease associations by fusing biological
     sc:url "http://sbi.imim.es/iLoopsServer" .
 
 <https://bio.tools/iloreg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2229,
@@ -250848,7 +257501,7 @@ ILoReg is a novel tool for cell population identification from single-cell RNA-s
     sc:url "https://github.com/elolab/iloreg" .
 
 <https://bio.tools/im6a-ts-cnn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0601,
         edam:topic_3308,
@@ -250864,8 +257517,28 @@ im6A-TS-cnn is able to identify multi-tissues in Human, Mouse and Rat.""" ;
     sc:name "im6A-TS-CNN" ;
     sc:url "https://github.com/liukeweiaway/DeepM6A_cnn" .
 
+<https://bio.tools/ima> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workbench" ;
+    sc:applicationSubCategory edam:topic_0123,
+        edam:topic_0128,
+        edam:topic_2229,
+        edam:topic_3474,
+        edam:topic_3957 ;
+    sc:citation <https://doi.org/10.3389/FGENE.2021.794354>,
+        "pmcid:PMC8712950",
+        "pubmed:34970305" ;
+    sc:description "IMA method for identifying protein complexes in PPI network" ;
+    sc:featureList edam:operation_0276,
+        edam:operation_3092,
+        edam:operation_3094 ;
+    sc:license "Not licensed" ;
+    sc:name "IMA" ;
+    sc:operatingSystem "Windows" ;
+    sc:url "https://github.com/RongquanWang/IMA" .
+
 <https://bio.tools/imaaagine> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -250888,7 +257561,7 @@ im6A-TS-cnn is able to identify multi-tissues in Human, Mouse and Rat.""" ;
     biotools:primaryContact "IMAAAGINE Support" .
 
 <https://bio.tools/image> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0196 ;
@@ -250902,7 +257575,7 @@ im6A-TS-cnn is able to identify multi-tissues in Human, Mouse and Rat.""" ;
     biotools:primaryContact "Tsai IJ" .
 
 <https://bio.tools/image-acquisition-toolbox> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3077,
@@ -250919,7 +257592,7 @@ im6A-TS-cnn is able to identify multi-tissues in Human, Mouse and Rat.""" ;
     biotools:primaryContact "MathWorks Image Acquisition Toolbox Team" .
 
 <https://bio.tools/image-acquisition-toolbox-support-package-point-grey-hardware> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3077,
@@ -250936,7 +257609,7 @@ im6A-TS-cnn is able to identify multi-tissues in Human, Mouse and Rat.""" ;
     biotools:primaryContact "MathWorks Image Acquisition Toolbox Team" .
 
 <https://bio.tools/image-acquisition-toolbox-support-package-qimaging-hardware> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3077,
@@ -250953,7 +257626,7 @@ im6A-TS-cnn is able to identify multi-tissues in Human, Mouse and Rat.""" ;
     biotools:primaryContact "MathWorks Image Acquisition Toolbox Team" .
 
 <https://bio.tools/image-feature-detection-pst> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3318,
@@ -250973,7 +257646,7 @@ im6A-TS-cnn is able to identify multi-tissues in Human, Mouse and Rat.""" ;
     biotools:primaryContact "Jalali Lab Jalalilab" .
 
 <https://bio.tools/image-section-generator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0611,
         edam:topic_3318,
@@ -250992,7 +257665,7 @@ im6A-TS-cnn is able to identify multi-tissues in Human, Mouse and Rat.""" ;
     biotools:primaryContact "Alison Chaiken" .
 
 <https://bio.tools/image-segmentation-active-contours-metric> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -251010,7 +257683,7 @@ im6A-TS-cnn is able to identify multi-tissues in Human, Mouse and Rat.""" ;
     biotools:primaryContact "Romeil Sandhu" .
 
 <https://bio.tools/image-segmentation-fluorescence-membranes> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3315,
@@ -251029,7 +257702,7 @@ im6A-TS-cnn is able to identify multi-tissues in Human, Mouse and Rat.""" ;
     biotools:primaryContact "Peter Nagy" .
 
 <https://bio.tools/image-volume-conversion> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0611,
         edam:topic_3344 ;
@@ -251045,7 +257718,7 @@ im6A-TS-cnn is able to identify multi-tissues in Human, Mouse and Rat.""" ;
     biotools:primaryContact "Kateryna Artyushkova" .
 
 <https://bio.tools/image_r> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0654,
@@ -251071,7 +257744,7 @@ IMAGE is implemented as an open source R package for mQTL mapping in sequencing-
     sc:url "https://github.com/fanyue322/IMAGE" .
 
 <https://bio.tools/image_sxm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0611 ;
     sc:description "Image SXM is a version of the public domain image analysis software NIH Image that has been extended to handle the loading, display and analysis of scanning microscope images. Image SXM supports SAM, SCM, SEM, SFM, SLM, SNOM, SPM and STM images." ;
@@ -251085,30 +257758,30 @@ IMAGE is implemented as an open source R package for mQTL mapping in sequencing-
 
 <https://bio.tools/imagehts> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3424" ;
-            sc:name "Raw image" ;
-            sc:sameAs "http://edamontology.org/data_3424" ],
+            sc:additionalType "http://edamontology.org/data_3424" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Raw image" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1052" ;
-            sc:name "URL" ;
-            sc:sameAs "http://edamontology.org/data_1052" ],
+            sc:additionalType "http://edamontology.org/data_3546" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Image metadata" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3546" ;
-            sc:name "Image metadata" ;
-            sc:sameAs "http://edamontology.org/data_3546" ] ;
+            sc:additionalType "http://edamontology.org/data_1052" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "URL" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ],
+            sc:additionalType "http://edamontology.org/data_3546" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Image metadata" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ],
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Plot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3546" ;
-            sc:name "Image metadata" ;
-            sc:sameAs "http://edamontology.org/data_3546" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Image" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -251128,22 +257801,20 @@ IMAGE is implemented as an open source R package for mQTL mapping in sequencing-
 
 <https://bio.tools/imagej> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ] ;
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3591" ;
+            sc:name "Image" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ],
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:name "Report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ],
+            sc:additionalType "http://edamontology.org/data_3546" ;
+            sc:name "Image metadata" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3546" ;
-            sc:name "Image metadata" ;
-            sc:sameAs "http://edamontology.org/data_3546" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3591" ;
+            sc:name "Image" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3382 ;
     sc:citation <https://doi.org/10.1038/nmeth.2089> ;
@@ -251160,22 +257831,20 @@ IMAGE is implemented as an open source R package for mQTL mapping in sequencing-
 
 <https://bio.tools/imagej_nih> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ] ;
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3591" ;
+            sc:name "Image" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ],
+            sc:additionalType "http://edamontology.org/data_3546" ;
+            sc:name "Image metadata" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ],
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3591" ;
+            sc:name "Image" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3546" ;
-            sc:name "Image metadata" ;
-            sc:sameAs "http://edamontology.org/data_3546" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Library" ;
     sc:applicationSubCategory edam:topic_3365,
@@ -251199,7 +257868,7 @@ IMAGE is implemented as an open source R package for mQTL mapping in sequencing-
     sc:url "http://rsb.info.nih.gov/ij/index.html" .
 
 <https://bio.tools/imagem> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3315,
         edam:topic_3383,
@@ -251214,7 +257883,7 @@ IMAGE is implemented as an open source R package for mQTL mapping in sequencing-
     biotools:primaryContact <https://orcid.org/0000-0001-7456-4632> .
 
 <https://bio.tools/imagemaster_melanie> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3382,
@@ -251229,7 +257898,7 @@ IMAGE is implemented as an open source R package for mQTL mapping in sequencing-
     biotools:primaryContact "Melanie Support" .
 
 <https://bio.tools/imageplane> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3304,
         edam:topic_3382,
@@ -251241,7 +257910,7 @@ IMAGE is implemented as an open source R package for mQTL mapping in sequencing-
     sc:url "http://www.yandell-lab.org/software/imageplane.html" .
 
 <https://bio.tools/imagepy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3382,
         edam:topic_3383,
@@ -251262,7 +257931,7 @@ IMAGE is implemented as an open source R package for mQTL mapping in sequencing-
         "Zhijun Wei" .
 
 <https://bio.tools/imagic> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0611,
         edam:topic_1317 ;
@@ -251280,7 +257949,7 @@ IMAGE is implemented as an open source R package for mQTL mapping in sequencing-
     sc:url "http://imagescience.de/imagic/" .
 
 <https://bio.tools/imagic-mrc-dm-and-star-file-io> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -251298,7 +257967,7 @@ IMAGE is implemented as an open source R package for mQTL mapping in sequencing-
     biotools:primaryContact "Fred Sigworth" .
 
 <https://bio.tools/imaging-amaretto> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Suite" ;
     sc:applicationSubCategory edam:topic_0602,
@@ -251328,7 +257997,7 @@ Integrating an increasing number of available multi-omics cancer data remains on
     sc:url "http://portals.broadinstitute.org/pochetlab/amaretto.html" .
 
 <https://bio.tools/imap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_2269,
@@ -251346,7 +258015,7 @@ Integrating an increasing number of available multi-omics cancer data remains on
     biotools:primaryContact "Xiang Zhou" .
 
 <https://bio.tools/imap-dl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3170,
@@ -251362,7 +258031,7 @@ Wang, D., Hou, S., Zhang, L. et al. iMAP: integration of multiple single-cell da
     sc:url "https://github.com/Svvord/iMAP" .
 
 <https://bio.tools/imap_perl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
@@ -251378,7 +258047,7 @@ Wang, D., Hou, S., Zhang, L. et al. iMAP: integration of multiple single-cell da
     sc:url "http://github.com/jkimlab/IMAP" .
 
 <https://bio.tools/imaris> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3382 ;
     sc:description "Imaris is Bitplane’s core scientific software module for data visualization, analysis, segmentation and interpretation of 3D and 4D microscopy datasets." ;
@@ -251390,7 +258059,7 @@ Wang, D., Hou, S., Zhang, L. et al. iMAP: integration of multiple single-cell da
     sc:url "http://www.bitplane.com/go/products/imaris" .
 
 <https://bio.tools/imarmot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3170,
@@ -251412,7 +258081,7 @@ Marmots are large Holarctic rodents in the genus Marmota with 14 living species.
     sc:url "http://www.marmotdb.org/" .
 
 <https://bio.tools/imas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0204,
@@ -251434,7 +258103,7 @@ Marmots are large Holarctic rodents in the genus Marmota with 14 living species.
     biotools:primaryContact "Seonggyun Han" .
 
 <https://bio.tools/imcdriver> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0114,
         edam:topic_0199,
@@ -251455,26 +258124,26 @@ Marmots are large Holarctic rodents in the genus Marmota with 14 living species.
 
 <https://bio.tools/imdev> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2082" ;
-            sc:name "Matrix" ;
-            sc:sameAs "http://edamontology.org/data_2082" ],
+            sc:additionalType "http://edamontology.org/data_2082" ;
+            sc:encodingFormat "http://edamontology.org/format_3468" ;
+            sc:name "Matrix" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2082" ;
-            sc:name "Matrix" ;
-            sc:sameAs "http://edamontology.org/data_2082" ] ;
+            sc:additionalType "http://edamontology.org/data_2082" ;
+            sc:encodingFormat "http://edamontology.org/format_3468" ;
+            sc:name "Matrix" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1636" ;
-            sc:name "Heat map" ;
-            sc:sameAs "http://edamontology.org/data_1636" ],
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3603" ;
+            sc:name "Plot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2082" ;
-            sc:name "Matrix" ;
-            sc:sameAs "http://edamontology.org/data_2082" ],
+            sc:additionalType "http://edamontology.org/data_1636" ;
+            sc:encodingFormat "http://edamontology.org/format_3603" ;
+            sc:name "Heat map" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2082" ;
+            sc:encodingFormat "http://edamontology.org/format_3468" ;
+            sc:name "Matrix" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3391,
@@ -251503,7 +258172,7 @@ Marmots are large Holarctic rodents in the genus Marmota with 14 living species.
     sc:url "http://imdevsoftware.wordpress.com/" .
 
 <https://bio.tools/imem-seq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0736,
@@ -251520,7 +258189,7 @@ Marmots are large Holarctic rodents in the genus Marmota with 14 living species.
     biotools:primaryContact "Xiao Xuan" .
 
 <https://bio.tools/imembrane> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0176,
@@ -251539,7 +258208,7 @@ Marmots are large Holarctic rodents in the genus Marmota with 14 living species.
     biotools:primaryContact "Charlotte Deane" .
 
 <https://bio.tools/imet-q> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3172 ;
     sc:citation <https://doi.org/10.1371/journal.pone.0146112>,
@@ -251556,18 +258225,18 @@ Marmots are large Holarctic rodents in the genus Marmota with 14 living species.
 
 <https://bio.tools/imetagene> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_3003" ;
+            sc:name "Sequence alignment" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ],
+            sc:additionalType "http://edamontology.org/data_2082" ;
+            sc:encodingFormat "http://edamontology.org/format_3603" ;
+            sc:name "Matrix" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2082" ;
-            sc:name "Matrix" ;
-            sc:sameAs "http://edamontology.org/data_2082" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3603" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3053,
@@ -251588,7 +258257,7 @@ Marmots are large Holarctic rodents in the genus Marmota with 14 living species.
     biotools:primaryContact "Audrey Lemacon" .
 
 <https://bio.tools/imeter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0203 ;
@@ -251606,7 +258275,7 @@ Marmots are large Holarctic rodents in the genus Marmota with 14 living species.
     sc:url "http://korflab.ucdavis.edu/cgi-bin/web-imeter.pl" .
 
 <https://bio.tools/imex> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0602,
@@ -251622,7 +258291,7 @@ Marmots are large Holarctic rodents in the genus Marmota with 14 living species.
     sc:url "http://www.imexconsortium.org/" .
 
 <https://bio.tools/imfler> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0602,
@@ -251644,7 +258313,7 @@ Marmots are large Holarctic rodents in the genus Marmota with 14 living species.
     sc:url "https://lv-csbg.github.io/IMFLer/" .
 
 <https://bio.tools/img> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0781,
@@ -251661,7 +258330,7 @@ Marmots are large Holarctic rodents in the genus Marmota with 14 living species.
     sc:url "http://img.jgi.doe.gov/" .
 
 <https://bio.tools/img2net> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0602 ;
@@ -251677,7 +258346,7 @@ Marmots are large Holarctic rodents in the genus Marmota with 14 living species.
     biotools:primaryContact "David Breuer" .
 
 <https://bio.tools/img_m> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0781,
@@ -251701,7 +258370,7 @@ Marmots are large Holarctic rodents in the genus Marmota with 14 living species.
     biotools:primaryContact "Contact Form" .
 
 <https://bio.tools/imgt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Bioinformatics portal",
         "Database portal",
         "Ontology",
@@ -251726,30 +258395,30 @@ Marmots are large Holarctic rodents in the genus Marmota with 14 living species.
 
 <https://bio.tools/imgt_3dstructure> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0842" ;
-            sc:name "Identifier" ;
-            sc:sameAs "http://edamontology.org/data_0842" ],
+            sc:additionalType "http://edamontology.org/data_1127" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "PDB ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1127" ;
-            sc:name "PDB ID" ;
-            sc:sameAs "http://edamontology.org/data_1127" ],
+            sc:additionalType "http://edamontology.org/data_2858" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Ontology concept" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0968" ;
-            sc:name "Keyword" ;
-            sc:sameAs "http://edamontology.org/data_0968" ],
+            sc:additionalType "http://edamontology.org/data_0842" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Identifier" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2858" ;
-            sc:name "Ontology concept" ;
-            sc:sameAs "http://edamontology.org/data_2858" ] ;
+            sc:additionalType "http://edamontology.org/data_0968" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Keyword" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ],
+            sc:additionalType "http://edamontology.org/data_2085" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Structure report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2085" ;
-            sc:name "Structure report" ;
-            sc:sameAs "http://edamontology.org/data_2085" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Sequence alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0621,
@@ -251778,7 +258447,7 @@ Annotation is based on the IMGT-ONTOLOGY concepts.""" ;
     biotools:primaryContact "Marie-Paule Lefranc" .
 
 <https://bio.tools/imgt_hla> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0199,
@@ -251800,14 +258469,12 @@ Annotation is based on the IMGT-ONTOLOGY concepts.""" ;
 
 <https://bio.tools/imgt_hla-sequence_alignment> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:name "Sequence alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_2830 ;
@@ -251830,22 +258497,22 @@ Annotation is based on the IMGT-ONTOLOGY concepts.""" ;
 
 <https://bio.tools/imgt_v-quest> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ] ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Nucleic acid sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2955" ;
-            sc:name "Sequence report" ;
-            sc:sameAs "http://edamontology.org/data_2955" ],
+            sc:additionalType "http://edamontology.org/data_2955" ;
+            sc:encodingFormat "http://edamontology.org/format_3620" ;
+            sc:name "Sequence report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ],
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Sequence features" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Sequence alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3168,
@@ -251873,7 +258540,7 @@ Analysis is based on the IMGT-ONTOLOGY concepts.""" ;
     biotools:primaryContact "Marie-Paule Lefranc" .
 
 <https://bio.tools/imir> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0085 ;
     sc:author "Giorgio Giurato" ;
@@ -251893,7 +258560,7 @@ Analysis is based on the IMGT-ONTOLOGY concepts.""" ;
         <http://orcid.org/0000-0003-0455-2083> .
 
 <https://bio.tools/imirp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0659 ;
@@ -251911,7 +258578,7 @@ Analysis is based on the IMGT-ONTOLOGY concepts.""" ;
     biotools:primaryContact "Robert L. Chow" .
 
 <https://bio.tools/imiss> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3518,
@@ -251926,7 +258593,7 @@ Analysis is based on the IMGT-ONTOLOGY concepts.""" ;
     sc:url "http://zhoulab.usc.edu/iMISS/" .
 
 <https://bio.tools/imitatedb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
@@ -251948,7 +258615,7 @@ Analysis is based on the IMGT-ONTOLOGY concepts.""" ;
     sc:url "http://imitatedb.sblab-nsit.net" .
 
 <https://bio.tools/imix> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_2269,
@@ -251969,7 +258636,7 @@ Ziqiao Wang and Peng Wei. IMIX: A multivariate mixture model approach to integra
     sc:url "https://github.com/ziqiaow/IMIX" .
 
 <https://bio.tools/imlook3d> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -251987,7 +258654,7 @@ Ziqiao Wang and Peng Wei. IMIX: A multivariate mixture model approach to integra
     biotools:primaryContact "Omer Demirkaya" .
 
 <https://bio.tools/imlp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0140,
         edam:topic_0154,
@@ -252005,7 +258672,7 @@ Ziqiao Wang and Peng Wei. IMIX: A multivariate mixture model approach to integra
     sc:url "https://github.com/CSBiology/iMLP" .
 
 <https://bio.tools/imman> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -252025,7 +258692,7 @@ Ziqiao Wang and Peng Wei. IMIX: A multivariate mixture model approach to integra
     biotools:primaryContact "Minoo Ashtiani" .
 
 <https://bio.tools/immc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0593,
         edam:topic_3315,
@@ -252038,8 +258705,22 @@ Ziqiao Wang and Peng Wei. IMIX: A multivariate mixture model approach to integra
     sc:name "iMMC" ;
     sc:url "http://mcx.space/#mmc" .
 
+<https://bio.tools/immcancer> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:citation <https://doi.org/10.1016/bs.apcsb.2021.11.008> ;
+    sc:description "ImmCancer - Portal For Cancer Immunothrerapy Tools And Repositories" ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "immcancer" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/immcancer/index.html> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/immcancer/index.html" .
+
 <https://bio.tools/immclassifier> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -252060,7 +258741,7 @@ Maintainer: Xuan Liu xuan.liu.1@uth.tmc.edu Sara Gosline sara.gosline@sagebase.o
     sc:url "https://github.com/xliu-uth/ImmClassifier" .
 
 <https://bio.tools/immquant> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0804,
         edam:topic_3308,
@@ -252078,8 +258759,30 @@ Maintainer: Xuan Liu xuan.liu.1@uth.tmc.edu Sara Gosline sara.gosline@sagebase.o
     sc:url "http://csgi.tau.ac.il/ImmQuant/" ;
     biotools:primaryContact "Irit Gat-Viks" .
 
+<https://bio.tools/immreg> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0602,
+        edam:topic_0659,
+        edam:topic_0804,
+        edam:topic_2640,
+        edam:topic_3400 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAB1041>,
+        "pmcid:PMC8643631",
+        "pubmed:34755873" ;
+    sc:description "The regulon atlas of immune-related pathways across cancer types." ;
+    sc:featureList edam:operation_0533,
+        edam:operation_3223,
+        edam:operation_3463 ;
+    sc:isAccessibleForFree true ;
+    sc:name "ImmReg" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://bio-bigdata.hrbmu.edu.cn/ImmReg/" .
+
 <https://bio.tools/immu-mela> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3170,
@@ -252096,20 +258799,44 @@ Maintainer: Xuan Liu xuan.liu.1@uth.tmc.edu Sara Gosline sara.gosline@sagebase.o
         "Windows" ;
     sc:url "http://bioinfo.vanderbilt.edu/database/Immu-Mela/" .
 
+<https://bio.tools/immucellai-mouse> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_3112" ;
+            sc:name "Gene expression matrix" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0634,
+        edam:topic_0804,
+        edam:topic_2229,
+        edam:topic_3308,
+        edam:topic_3934 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAB711>,
+        "pubmed:34636837" ;
+    sc:description "A tool for comprehensive prediction of mouse immune cell abundance and immune microenvironment depiction." ;
+    sc:featureList edam:operation_0252,
+        edam:operation_0314,
+        edam:operation_3463 ;
+    sc:isAccessibleForFree true ;
+    sc:name "ImmuCellAI-mouse" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://bioinfo.life.hust.edu.cn/ImmuCellAI-mouse/" .
+
 <https://bio.tools/immunarch> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1383" ;
-            sc:name "Sequence alignment (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1383" ] ;
+            sc:additionalType "http://edamontology.org/data_1383" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "Sequence alignment (nucleic acid)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ],
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_2333" ;
+            sc:name "Plot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2830 ;
     sc:citation <https://doi.org/10.5281/zenodo.3367200> ;
@@ -252130,7 +258857,7 @@ Maintainer: Xuan Liu xuan.liu.1@uth.tmc.edu Sara Gosline sara.gosline@sagebase.o
     sc:url "https://immunarch.com" .
 
 <https://bio.tools/immuneSIM> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0804 ;
     sc:citation <https://doi.org/10.1101/759795> ;
@@ -252139,13 +258866,8 @@ Maintainer: Xuan Liu xuan.liu.1@uth.tmc.edu Sara Gosline sara.gosline@sagebase.o
     sc:name "immuneSIM" ;
     sc:url "https://github.com/GreiffLab/immuneSIM" .
 
-<https://bio.tools/immune_repertoire_sequencing> a sc:SoftwareApplication ;
-    sc:description "CD Genomics has developed advanced Immune Repertoire Sequencing strategy to amplify and sequence the immune repertoire with Next Generation Sequencing (NGS). Now, we are providing comprehensive solution to evaluate the diversity of immune repertoire precisely in a cost-effective way by pooling the samples." ;
-    sc:name "Immune Repertoire Sequencing" ;
-    sc:url "https://www.cd-genomics.com/Immune-Repertoire-Sequencing.html" .
-
 <https://bio.tools/immunedeconv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_2229,
@@ -252161,7 +258883,7 @@ Maintainer: Xuan Liu xuan.liu.1@uth.tmc.edu Sara Gosline sara.gosline@sagebase.o
     sc:url "https://github.com/grst/immune_deconvolution_benchmark" .
 
 <https://bio.tools/immuneml> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_2830,
@@ -252176,8 +258898,32 @@ Maintainer: Xuan Liu xuan.liu.1@uth.tmc.edu Sara Gosline sara.gosline@sagebase.o
     sc:url "http://immuneml.uio.no" ;
     biotools:primaryContact "Geir Kjetil Sandve" .
 
+<https://bio.tools/immuneref> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0634,
+        edam:topic_0769,
+        edam:topic_2830,
+        edam:topic_3063,
+        edam:topic_3930 ;
+    sc:citation <https://doi.org/10.1016/j.crmeth.2022.100269>,
+        "pmcid:PMC9421535",
+        "pubmed:36046619" ;
+    sc:description "Reference-based comparison of adaptive immune receptor repertoires." ;
+    sc:featureList edam:operation_0300,
+        edam:operation_0491,
+        edam:operation_3799 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "immuneREF" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://immuneref.readthedocs.io/en/latest/> ;
+    sc:url "https://github.com/GreiffLab/immuneREF" .
+
 <https://bio.tools/immunespacer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0804,
@@ -252196,7 +258942,7 @@ Maintainer: Xuan Liu xuan.liu.1@uth.tmc.edu Sara Gosline sara.gosline@sagebase.o
     biotools:primaryContact "Renan Sauteraud" .
 
 <https://bio.tools/immuno-analytics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0199,
@@ -252214,7 +258960,7 @@ The SARS-CoV-2 Immunoanalytics platform is an online tool for the visulisation a
     sc:url "http://genomics.lshtm.ac.uk/immuno" .
 
 <https://bio.tools/immunoaizer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_2229,
@@ -252234,7 +258980,7 @@ The SARS-CoV-2 Immunoanalytics platform is an online tool for the visulisation a
         "Yang Du" .
 
 <https://bio.tools/immunoclust> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0804,
@@ -252255,7 +259001,7 @@ The SARS-CoV-2 Immunoanalytics platform is an online tool for the visulisation a
     biotools:primaryContact "Till Soerensen" .
 
 <https://bio.tools/immunocluster> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2830,
         edam:topic_3337,
@@ -252279,7 +259025,7 @@ The immunoCluster package uses the scDataViz bioconductor package’s vizualizat
         "James N. Arnold" .
 
 <https://bio.tools/immunodb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0602,
@@ -252301,7 +259047,7 @@ The immunoCluster package uses the scDataViz bioconductor package’s vizualizat
     biotools:primaryContact "Robert M Waterhouse" .
 
 <https://bio.tools/immunoglobe> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -252322,7 +259068,7 @@ ImmunoGlobe is a map of the immune network that describes how different parts of
     sc:url "http://www.immunoglobe.org" .
 
 <https://bio.tools/immunogram> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0804,
@@ -252343,7 +259089,7 @@ Because of the complexity of cancer-immune system interactions, combinations of
     sc:url "https://yamashige33.shinyapps.io/immunogram/" .
 
 <https://bio.tools/immunological-toolbox> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0749,
         edam:topic_0804,
@@ -252364,7 +259110,7 @@ The Antibody Hub has been established with the aim of improving animal and human
     sc:url "https://www.immunologicaltoolbox.co.uk" .
 
 <https://bio.tools/immunophenotype> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0625,
@@ -252382,8 +259128,24 @@ Wellcome Trust Sanger Institute.""" ;
     sc:name "immunophenotype" ;
     sc:url "http://www.immunophenotype.org" .
 
+<https://bio.tools/immunospdb> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:citation <https://doi.org/10.1093/database/baz012>,
+        "pmcid:PMC6367516",
+        "pubmed:30753476" ;
+    sc:description "ImmunoSPdb is a repository of experimentally validated peptides which suppress the immune system. All information compiled in this database has been extracted from research papers and patents." ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "immunospdb" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/immunospdb/> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/immunospdb/" .
+
 <https://bio.tools/imod> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0611,
         edam:topic_1317 ;
@@ -252401,7 +259163,7 @@ Wellcome Trust Sanger Institute.""" ;
     sc:url "http://bio3d.colorado.edu/imod/" .
 
 <https://bio.tools/imods> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0082,
@@ -252425,7 +259187,7 @@ Wellcome Trust Sanger Institute.""" ;
     biotools:primaryContact "Chacón P." .
 
 <https://bio.tools/imodulondb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3170,
@@ -252446,7 +259208,7 @@ iModulonDB is maintained by the Systems Biology Research Group at the University
     sc:url "http://imodulondb.org" .
 
 <https://bio.tools/imomlogit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3678 ;
     sc:citation "pubmed:26740524" ;
@@ -252459,7 +259221,7 @@ iModulonDB is maintained by the Systems Biology Research Group at the University
     sc:url "http://www.stat.tamu.edu/~amir/code.html" .
 
 <https://bio.tools/imot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0130,
@@ -252481,7 +259243,7 @@ iModulonDB is maintained by the Systems Biology Research Group at the University
     biotools:primaryContact "Dr. R. Sowdhamini" .
 
 <https://bio.tools/imp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0203,
@@ -252501,7 +259263,7 @@ iModulonDB is maintained by the Systems Biology Research Group at the University
     biotools:primaryContact "Troyanskaya O. G." .
 
 <https://bio.tools/imp-sampcon> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3306,
         edam:topic_3382,
@@ -252515,7 +259277,7 @@ iModulonDB is maintained by the Systems Biology Research Group at the University
     sc:url "https://github.com/salilab/IMP-sampcon" .
 
 <https://bio.tools/imp_biomolecules> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0593,
@@ -252534,7 +259296,7 @@ iModulonDB is maintained by the Systems Biology Research Group at the University
     sc:url "http://www.salilab.org/imp/" .
 
 <https://bio.tools/imp_omic> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_3174,
@@ -252556,7 +259318,7 @@ iModulonDB is maintained by the Systems Biology Research Group at the University
     biotools:primaryContact "Shaman Narayanasamy" .
 
 <https://bio.tools/impact> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_2814,
@@ -252581,7 +259343,7 @@ iModulonDB is maintained by the Systems Biology Research Group at the University
     biotools:primaryContact <https://orcid.org/0000-0002-0084-6116> .
 
 <https://bio.tools/impact_s> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_2275,
@@ -252608,7 +259370,7 @@ iModulonDB is maintained by the Systems Biology Research Group at the University
     biotools:primaryContact <https://orcid.org/0000-0002-0084-6116> .
 
 <https://bio.tools/impala> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_2259,
@@ -252625,7 +259387,7 @@ iModulonDB is maintained by the Systems Biology Research Group at the University
     sc:url "http://impala.molgen.mpg.de/" .
 
 <https://bio.tools/impartial> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_2640,
@@ -252643,18 +259405,15 @@ Partial Annotations for MultiplexCell Instance Segmentation.""" ;
 
 <https://bio.tools/impc> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0968" ;
-            sc:name "Keyword" ;
-            sc:sameAs "http://edamontology.org/data_0968" ] ;
+            sc:additionalType "http://edamontology.org/data_0968" ;
+            sc:name "Keyword" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0916" ;
-            sc:name "Gene report" ;
-            sc:sameAs "http://edamontology.org/data_0916" ],
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:name "Image" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0916" ;
+            sc:name "Gene report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0625 ;
     sc:citation <https://doi.org/10.1093/nar/gkt977> ;
@@ -252670,7 +259429,7 @@ Partial Annotations for MultiplexCell Instance Segmentation.""" ;
     biotools:primaryContact "Terry Meehan" .
 
 <https://bio.tools/impcdata> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:description "Package contains methods for data retrieval from IMPC Database." ;
@@ -252687,7 +259446,7 @@ Partial Annotations for MultiplexCell Instance Segmentation.""" ;
     biotools:primaryContact "Jeremy Mason" .
 
 <https://bio.tools/impg-summary> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_2269,
@@ -252703,7 +259462,7 @@ Partial Annotations for MultiplexCell Instance Segmentation.""" ;
     sc:url "http://bogdan.bioinformatics.ucla.edu/software/impg/" .
 
 <https://bio.tools/impmd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0634,
@@ -252722,8 +259481,34 @@ Partial Annotations for MultiplexCell Instance Segmentation.""" ;
     sc:name "IMPMD" ;
     sc:url "https://github.com/Sunmile/IMPMD" .
 
+<https://bio.tools/impp> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Protein sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0196,
+        edam:topic_0602,
+        edam:topic_3174,
+        edam:topic_3837 ;
+    sc:citation <https://doi.org/10.1101/2021.09.20.461079> ;
+    sc:description "iMPP is a tool designed to predict and assemble peptides from short fragmentary reads. iMPP is written in C++ and has been tested on a 64-bit Linux system. The input for the software are FASTQ sequences, and the output comprises of 4 files: 1. predicted genes (nucl), 2. predicted peptides (prot), 3. gene predictions in gff format, 4. assembled peptide sequences (prot)." ;
+    sc:featureList edam:operation_0524,
+        edam:operation_0525,
+        edam:operation_3644,
+        edam:operation_3660 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "iMPP" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/Sirisha-t/iMPP" .
+
 <https://bio.tools/impre> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0804,
         edam:topic_2830,
@@ -252741,7 +259526,7 @@ Partial Annotations for MultiplexCell Instance Segmentation.""" ;
     biotools:primaryContact "Xiao Liu" .
 
 <https://bio.tools/improj3> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3306,
         edam:topic_3344,
@@ -252759,7 +259544,7 @@ Partial Annotations for MultiplexCell Instance Segmentation.""" ;
     biotools:primaryContact "Fang Liu" .
 
 <https://bio.tools/improv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3077,
@@ -252780,7 +259565,7 @@ improv is a streaming software platform designed to enable adaptive experiments.
     sc:url "http://github.com/pearsonlab/improv" .
 
 <https://bio.tools/improver> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0130,
         edam:topic_0199,
@@ -252802,7 +259587,7 @@ Identifying stabilising variants of membrane protein targets is often required f
     sc:url "http://improver.ddns.net/IMPROvER/" .
 
 <https://bio.tools/impulsede> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -252822,7 +259607,7 @@ Identifying stabilising variants of membrane protein targets is often required f
         "Nir Yosef" .
 
 <https://bio.tools/impulsede2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2229,
@@ -252843,7 +259628,7 @@ Identifying stabilising variants of membrane protein targets is often required f
     biotools:primaryContact "David S Fischer" .
 
 <https://bio.tools/impusars> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0091,
@@ -252852,11 +259637,14 @@ Identifying stabilising variants of membrane protein targets is often required f
     sc:isAccessibleForFree true ;
     sc:license "MIT" ;
     sc:name "impuSARS" ;
-    sc:softwareVersion "1.0" ;
+    sc:softwareVersion "v1.0",
+        "v2.0",
+        "v3.0",
+        "v3.1" ;
     sc:url "https://github.com/babelomics/impuSARS" .
 
 <https://bio.tools/impute> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -252875,7 +259663,7 @@ Identifying stabilising variants of membrane protein targets is often required f
     biotools:primaryContact "Balasubramanian Narasimhan" .
 
 <https://bio.tools/impute2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3056 ;
     sc:citation <https://doi.org/10.1371/journal.pgen.1000529>,
@@ -252893,10 +259681,10 @@ Identifying stabilising variants of membrane protein targets is often required f
 
 <https://bio.tools/imputehr> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2526" ;
-            sc:name "Text data" ;
-            sc:sameAs "http://edamontology.org/data_2526" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2526" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Text data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0769,
@@ -252919,7 +259707,7 @@ Identifying stabilising variants of membrane protein targets is often required f
     sc:url "https://imputehr.statgen.ncsu.edu" .
 
 <https://bio.tools/imputeqc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2885,
@@ -252938,7 +259726,7 @@ imputeqc is an R package and accompanied scripts to estimate the quality of impu
     sc:url "https://github.com/inzilico/imputeqc" .
 
 <https://bio.tools/imread_big> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -252953,8 +259741,29 @@ imputeqc is an R package and accompanied scripts to estimate the quality of impu
     sc:url "https://www.mathworks.com/matlabcentral/fileexchange/61376-imread_big-read-in-tiff-stacks-larger-than-4gb" ;
     biotools:primaryContact "Tristan Ursell" .
 
+<https://bio.tools/imrelnc> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workbench" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0602,
+        edam:topic_0659,
+        edam:topic_2640,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.3389/FGENE.2021.792541>,
+        "pmcid:PMC8784420",
+        "pubmed:35082835" ;
+    sc:description "ImReLnc accurately identified the irlncRNA characteristics in multiple cancers based on the heuristic correlation coefficient" ;
+    sc:featureList edam:operation_0314,
+        edam:operation_3461,
+        edam:operation_3501 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "ImReLnc" ;
+    sc:operatingSystem "Linux" ;
+    sc:url "https://github.com/meihonggao/ImReLnc" .
+
 <https://bio.tools/imrm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_3170,
@@ -252972,8 +259781,24 @@ iMRM is able to simultaneously identify m6A, m5C, m1A, ψ and A-to-I modificatio
     sc:name "iMRM" ;
     sc:url "http://www.bioml.cn/XG_iRNA/home" .
 
+<https://bio.tools/imrna> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:citation <https://doi.org/10.1038/srep20678>,
+        "pmcid:PMC4748260",
+        "pubmed:26861761" ;
+    sc:description "This is developed for designing a single-strand RNA sequence with desired immunomodulatory potentials in order to develop RNA-based therapeutics, immunotherapy and vaccine-adjuvants. This server also facilitates the users in computer-aided designing of siRNAs with desired toxicity." ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "imrna" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/imrna/index.html> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/imrna/index.html" .
+
 <https://bio.tools/imsdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_3071,
         edam:topic_3172,
@@ -252994,7 +259819,7 @@ iMRM is able to simultaneously identify m6A, m5C, m1A, ψ and A-to-I modificatio
     biotools:primaryContact "Jan Baumbach" .
 
 <https://bio.tools/imseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654,
@@ -253013,8 +259838,33 @@ iMRM is able to simultaneously identify m6A, m5C, m1A, ψ and A-to-I modificatio
     sc:url "http://www.imtools.org/" ;
     biotools:primaryContact "Leon Kuchenbecke" .
 
+<https://bio.tools/imshot> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Desktop application",
+        "Library" ;
+    sc:applicationSubCategory edam:topic_0080,
+        edam:topic_0121,
+        edam:topic_0154,
+        edam:topic_0602,
+        edam:topic_3520 ;
+    sc:citation <https://doi.org/10.1016/J.MCPRO.2022.100242>,
+        "pmcid:PMC9194865",
+        "pubmed:35569805" ;
+    sc:description "The software ImShot aims to identifying peptides obtained in MALDI-IMS." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3627,
+        edam:operation_3629,
+        edam:operation_3767 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Other" ;
+    sc:name "ImShot" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/wasimaftab/ImShot" .
+
 <https://bio.tools/imsim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3365,
@@ -253038,7 +259888,7 @@ Simulation of two-dimensional small angle X-ray scattering patterns and, further
     sc:url "https://www.embl-hamburg.de/biosaxs/manuals/imsim.html" .
 
 <https://bio.tools/imsindel> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0102,
@@ -253056,7 +259906,7 @@ Simulation of two-dimensional small angle X-ray scattering patterns and, further
         "Tatsuhiko Tsunoda" .
 
 <https://bio.tools/imubac> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3366,
@@ -253073,8 +259923,36 @@ The 'iMUBAC' package provides a structured framework for objective inter-batch c
     sc:name "iMUBAC" ;
     sc:url "https://github.com/casanova-lab/iMUBAC" .
 
+<https://bio.tools/imul-ksite> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0080,
+        edam:topic_0121,
+        edam:topic_0154,
+        edam:topic_0601,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1038/S41598-021-98458-Y>,
+        "pmcid:PMC8460736",
+        "pubmed:34556767" ;
+    sc:description "Computational identification of multiple lysine PTM sites by analyzing the instance hardness and feature importance." ;
+    sc:featureList edam:operation_0417,
+        edam:operation_1777,
+        edam:operation_3431,
+        edam:operation_3645 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "iMul-kSite" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://103.99.176.239/iMul-kSite" .
+
 <https://bio.tools/imutsig> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_2269,
@@ -253085,7 +259963,7 @@ The 'iMUBAC' package provides a structured framework for objective inter-batch c
     sc:url "https://zhiyang.shinyapps.io/iMutSig/" .
 
 <https://bio.tools/in-pero> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0140,
         edam:topic_0154,
@@ -253106,14 +259984,13 @@ In-Pero: Prediction of sub-peroxisomal localisation using deep learning embeddin
 
 <https://bio.tools/inDelphi> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_2269,
@@ -253134,7 +260011,7 @@ In-Pero: Prediction of sub-peroxisomal localisation using deep learning embeddin
     sc:url "https://indelphi.giffordlab.mit.edu" .
 
 <https://bio.tools/inb-bsc_genomics_cloud> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:author "Christian Ramon Cortes",
@@ -253152,7 +260029,7 @@ In-Pero: Prediction of sub-peroxisomal localisation using deep learning embeddin
     biotools:primaryContact "Laia Codó" .
 
 <https://bio.tools/inca> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0654 ;
@@ -253169,7 +260046,7 @@ In-Pero: Prediction of sub-peroxisomal localisation using deep learning embeddin
     sc:url "http://bioinfo.hr/research/inca/" .
 
 <https://bio.tools/incanalysis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_2640,
@@ -253184,23 +260061,8 @@ Comparative analysis of model performance for rate data.""" ;
     sc:name "incAnalysis" ;
     sc:url "http://github.com/mknoll/incAnalysis" .
 
-<https://bio.tools/incarceration> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0602,
-        edam:topic_3419 ;
-    sc:citation <https://doi.org/10.1037/ORT0000436>,
-        "pubmed:31829646" ;
-    sc:description """Modeling life course pathways affecting behavioral health.
-
-A consequence of a growing incarceration rate is that an increasing number of children face having an incarcerated household member, a known contributor to diverse lifelong behavioral health risks such as substance use and mental health impairment. Few studies have explored how household incarceration uniquely contributes to these subsequent behavioral health concerns, nor mediational contributors to these associations, within a theoretical framework. Using state Behavioral Risk Factor Surveillance System survey data (n = 14,001), this study tests pathways of household incarceration and Adverse Childhood Experiences (ACEs) to mental health impairment and substance use in adulthood.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'household incarceration'""" ;
-    sc:name "incarceration" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31829646" .
-
 <https://bio.tools/incarnafbinv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0099,
@@ -253218,7 +260080,7 @@ A consequence of a growing incarceration rate is that an increasing number of ch
     biotools:primaryContact "Barash D." .
 
 <https://bio.tools/incgraph> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0602 ;
@@ -253238,7 +260100,7 @@ A consequence of a growing incarceration rate is that an increasing number of ch
     biotools:primaryContact "Robrecht Cannoodt" .
 
 <https://bio.tools/inchi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_2258,
         edam:topic_3071 ;
@@ -253254,7 +260116,7 @@ A consequence of a growing incarceration rate is that an increasing number of ch
     sc:url "http://www.chemspider.com/InChI.asmx" .
 
 <https://bio.tools/incidence> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3305,
         edam:topic_3324 ;
@@ -253276,7 +260138,7 @@ A consequence of a growing incarceration rate is that an increasing number of ch
     biotools:primaryContact "Zhian N. Kamvar" .
 
 <https://bio.tools/inclusive> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0203 ;
@@ -253290,7 +260152,7 @@ A consequence of a growing incarceration rate is that an increasing number of ch
     sc:url "http://www.esat.kuleuven.ac.be/inclusive" .
 
 <https://bio.tools/incromap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3295,
         edam:topic_3512,
@@ -253310,7 +260172,7 @@ A consequence of a growing incarceration rate is that an increasing number of ch
     biotools:primaryContact "Dr. Clemens Wrzodek" .
 
 <https://bio.tools/incucytedrc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3336,
@@ -253330,7 +260192,7 @@ A consequence of a growing incarceration rate is that an increasing number of ch
     biotools:primaryContact "Phil J. Chapman" .
 
 <https://bio.tools/ind-enzymes> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0821,
         edam:topic_3068,
@@ -253348,7 +260210,7 @@ A consequence of a growing incarceration rate is that an increasing number of ch
     biotools:primaryContact "Lilly M. Saleena" .
 
 <https://bio.tools/indcaps> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0607 ;
@@ -253363,7 +260225,7 @@ A consequence of a growing incarceration rate is that an increasing number of ch
     biotools:primaryContact "Joseph J. Kieber" .
 
 <https://bio.tools/indecut> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0602,
@@ -253379,8 +260241,33 @@ A consequence of a growing incarceration rate is that an increasing number of ch
     biotools:primaryContact "David Koslicki",
         "Molly Megraw" .
 
+<https://bio.tools/indeep> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0128,
+        edam:topic_0154,
+        edam:topic_0209,
+        edam:topic_3324,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAB849>,
+        "pmcid:PMC8826379",
+        "pubmed:34908131" ;
+    sc:description "3D fully convolutional neural networks to assist in silico drug design on protein-protein interactions." ;
+    sc:featureList edam:operation_0244,
+        edam:operation_0416,
+        edam:operation_2575,
+        edam:operation_3899,
+        edam:operation_4009 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "InDeep" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://gitlab.pasteur.fr/InDeep/InDeep" .
+
 <https://bio.tools/indel-seq-gen> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0080,
@@ -253395,7 +260282,7 @@ A consequence of a growing incarceration rate is that an increasing number of ch
     biotools:primaryContact "Cory L. Strope" .
 
 <https://bio.tools/indelcoder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0080 ;
@@ -253410,7 +260297,7 @@ A consequence of a growing incarceration rate is that an increasing number of ch
     biotools:primaryContact "Michael S. Rosenberg" .
 
 <https://bio.tools/indelfr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0154,
@@ -253432,7 +260319,7 @@ A consequence of a growing incarceration rate is that an increasing number of ch
     biotools:primaryContact "Bin Gong" .
 
 <https://bio.tools/indelpost> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0102,
@@ -253454,7 +260341,7 @@ A consequence of a growing incarceration rate is that an increasing number of ch
     sc:url "https://github.com/stjude/indelPost" .
 
 <https://bio.tools/indelscan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0622,
@@ -253469,23 +260356,8 @@ A consequence of a growing incarceration rate is that an increasing number of ch
     sc:name "INDELSCAN" ;
     sc:url "http://indelscan.genomics.sinica.edu.tw/IndelScan/" .
 
-<https://bio.tools/independientes_para_el_ileo_postoperatorio> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0602,
-        edam:topic_3421 ;
-    sc:citation <https://doi.org/10.1097/DCR.0000000000001522>,
-        "pubmed:31633601" ;
-    sc:description """Potential Association Between Perioperative Fluid Management and Occurrence of Postoperative Ileus.
-
-BACKGROUND:Postoperative ileus remains an issue after colorectal surgery delaying recovery and increasing the length of hospital stay and costs. OBJECTIVE:The purpose of this study was to analyze the impact of perioperative fluid management on ileus occurrence after colorectal surgery within a fully implemented enhanced recovery pathway. DESIGN:This was a retrospective cohort study of a prospectively maintained institutional database. SETTINGS:The study was conducted at a tertiary academic facility with fully implemented standardized enhanced recovery pathway over the entire study period. PATIENTS:All of the consecutive elective major colorectal resections for benign or malign indications between 2011 and 2016 were included.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'B54', 'El ileo postoperatorio', 'para el ileo postoperatorio', 'riesgo independientes para el ileo'""" ;
-    sc:name "independientes para el ileo postoperatorio" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31633601" .
-
 <https://bio.tools/indexcov> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3572,
@@ -253503,7 +260375,7 @@ BACKGROUND:Postoperative ileus remains an issue after colorectal surgery delayin
     biotools:primaryContact "Brent S Pedersen" .
 
 <https://bio.tools/indexnet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3382 ;
@@ -253517,7 +260389,7 @@ Simple and effective: IndexNet Matting only deals with the upsampling stage but
     sc:url "https://git.io/IndexNet" .
 
 <https://bio.tools/india-covid19-patients-forecastive-model-standalone-app> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -253535,18 +260407,18 @@ Simple and effective: IndexNet Matting only deals with the upsampling stage but
 
 <https://bio.tools/indices_diversity> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:citation <https://doi.org/10.1093/nar/gkw343>,
@@ -253565,7 +260437,7 @@ Simple and effective: IndexNet Matting only deals with the upsampling stage but
     biotools:primaryContact "Galaxy Support Team" .
 
 <https://bio.tools/indigenomes> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0622,
@@ -253586,22 +260458,22 @@ IndiGenomes Resource of Population Genomes from India.""" ;
 
 <https://bio.tools/indigestion> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3021" ;
-            sc:name "UniProt accession" ;
-            sc:sameAs "http://edamontology.org/data_3021" ] ;
+            sc:additionalType "http://edamontology.org/data_3021" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "UniProt accession" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2970" ;
-            sc:name "Protein hydropathy data" ;
-            sc:sameAs "http://edamontology.org/data_2970" ],
+            sc:additionalType "http://edamontology.org/data_2970" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Protein hydropathy data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1238" ;
-            sc:name "Proteolytic digest" ;
-            sc:sameAs "http://edamontology.org/data_1238" ],
+            sc:additionalType "http://edamontology.org/data_1238" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Proteolytic digest" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1522" ;
-            sc:name "Protein sequence hydropathy plot" ;
-            sc:sameAs "http://edamontology.org/data_1522" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1522" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Protein sequence hydropathy plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0121,
@@ -253619,7 +260491,7 @@ IndiGenomes Resource of Population Genomes from India.""" ;
     sc:url "http://indigestionapp.com" .
 
 <https://bio.tools/indigo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0622,
@@ -253639,7 +260511,7 @@ IndiGenomes Resource of Population Genomes from India.""" ;
     biotools:primaryContact "Support" .
 
 <https://bio.tools/individualizedpath> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -253659,7 +260531,7 @@ IndiGenomes Resource of Population Genomes from India.""" ;
     biotools:primaryContact "Xiao Yun" .
 
 <https://bio.tools/indpensim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0593,
         edam:topic_3297,
@@ -253678,7 +260550,7 @@ IndiGenomes Resource of Population Genomes from India.""" ;
     biotools:primaryContact "Stephen Goldrick" .
 
 <https://bio.tools/inetmodels> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0602,
         edam:topic_2640,
@@ -253695,26 +260567,8 @@ IndiGenomes Resource of Population Genomes from India.""" ;
     biotools:primaryContact <https://orcid.org/0000-0002-3721-8586>,
         <https://orcid.org/0000-0002-4254-6090> .
 
-<https://bio.tools/infection_dating> a sc:SoftwareApplication ;
-    sc:additionalType "Web application" ;
-    sc:applicationSubCategory edam:topic_2269,
-        edam:topic_3305,
-        edam:topic_3379 ;
-    sc:citation <https://doi.org/10.1186/S12879-019-4543-9>,
-        "pmcid:PMC6815418",
-        "pubmed:31655566" ;
-    sc:description """Interpreting HIV diagnostic histories into infection time estimates.
-
-BACKGROUND:It is frequently of epidemiological and or clinical interest to estimate the date of HIV infection or time-since-infection of individuals. Yet, for over 15 years, the only widely-referenced infection dating algorithm that utilises diagnostic testing data to estimate time-since-infection has been the 'Fiebig staging' system. This defines a number of stages of early HIV infection through various standard combinations of contemporaneous discordant diagnostic results using tests of different sensitivity.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'infection dating tool', 'infection date', 'interpretation diagnostic', 'interpretation diagnostic testing'""" ;
-    sc:featureList edam:operation_3196,
-        edam:operation_3435 ;
-    sc:name "infection dating" ;
-    sc:url "https://tools.incidence-estimation.org/idt/" .
-
 <https://bio.tools/inferbert> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0218,
         edam:topic_2840,
@@ -253736,7 +260590,7 @@ BACKGROUND:It is frequently of epidemiological and or clinical interest to estim
     sc:url "https://github.com/XingqiaoWang/DeepCausalPV-master" .
 
 <https://bio.tools/infercars> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0194,
         edam:topic_0622,
@@ -253753,21 +260607,23 @@ BACKGROUND:It is frequently of epidemiological and or clinical interest to estim
 
 <https://bio.tools/infernal> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1354" ;
-            sc:name "Sequence profile" ;
-            sc:sameAs "http://edamontology.org/data_1354" ] ;
+            sc:additionalType "http://edamontology.org/data_1354" ;
+            sc:encodingFormat "http://edamontology.org/format_2069" ;
+            sc:name "Sequence profile" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2080" ;
-            sc:name "Database search results" ;
-            sc:sameAs "http://edamontology.org/data_2080" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2080" ;
+            sc:name "Database search results" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:citation <https://doi.org/10.1093/bioinformatics/btt509>,
+        "pmcid:PMC3810854",
+        "pubmed:24008419" ;
     sc:description "Infernal (\"INFERence of RNA ALignment\") is for searching DNA sequence databases for RNA structure and sequence similarities. It is an implementation of a special case of profile stochastic context-free grammars called covariance models (CMs). A CM is like a sequence profile, but it scores a combination of sequence consensus and RNA secondary structure consensus, so in many cases, it is more capable of identifying RNA homologs that conserve their secondary structure more than their primary sequence." ;
     sc:featureList edam:operation_2478 ;
     sc:name "Infernal" ;
     sc:url "http://eddylab.org/infernal/" .
 
 <https://bio.tools/infernal_cmscan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1093/nar/gku1063> ;
@@ -253782,7 +260638,7 @@ BACKGROUND:It is frequently of epidemiological and or clinical interest to estim
     sc:url "http://www.ebi.ac.uk/Tools/webservices/services/rna/infernal_cmscan_rest" .
 
 <https://bio.tools/infima> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_2885,
@@ -253803,7 +260659,7 @@ BACKGROUND:It is frequently of epidemiological and or clinical interest to estim
     sc:url "http://www.statlab.wisc.edu/shiny/INFIMA/" .
 
 <https://bio.tools/infiniumpurify> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_2640,
@@ -253819,8 +260675,39 @@ BACKGROUND:It is frequently of epidemiological and or clinical interest to estim
     biotools:primaryContact "Naiqian Zhang",
         "Xiaoqi Zheng" .
 
+<https://bio.tools/inflamnat> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_0883" ;
+            sc:encodingFormat "http://edamontology.org/format_1196" ;
+            sc:name "Structure" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1009" ;
+            sc:name "Protein name" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2646" ;
+            sc:name "Compound ID (ChEMBL)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0209,
+        edam:topic_0218,
+        edam:topic_3373,
+        edam:topic_3375 ;
+    sc:citation <https://doi.org/10.21203/RS.3.RS-1030714/V1> ;
+    sc:description "Web-Based Database and Predictor of Anti-Inflammatory Natural Products." ;
+    sc:featureList edam:operation_0303,
+        edam:operation_3454,
+        edam:operation_4009 ;
+    sc:isAccessibleForFree true ;
+    sc:name "InflamNat" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://www.inflamnat.com/" .
+
 <https://bio.tools/inflect> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -253842,13 +260729,13 @@ BACKGROUND:It is frequently of epidemiological and or clinical interest to estim
     sc:url "https://cran.r-project.org/web/packages/Inflect/index.html" .
 
 <https://bio.tools/influx_si> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "influx_si estimates metabolic fluxes and concentrations based on stationary or dynamic labeling experiments conducted on cultures held in a metabolically stationary state." ;
     sc:name "influx_si" ;
     sc:url "https://metasys.insa-toulouse.fr/software/influx/" .
 
 <https://bio.tools/infmod3dgen> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_2275 ;
@@ -253863,7 +260750,7 @@ BACKGROUND:It is frequently of epidemiological and or clinical interest to estim
     biotools:primaryContact "Siyu Wang" .
 
 <https://bio.tools/info-rna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0097,
@@ -253887,18 +260774,15 @@ BACKGROUND:It is frequently of epidemiological and or clinical interest to estim
 
 <https://bio.tools/infoalign> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0874" ;
-            sc:name "Comparison matrix" ;
-            sc:sameAs "http://edamontology.org/data_0874" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:name "Sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
+            sc:additionalType "http://edamontology.org/data_0874" ;
+            sc:name "Comparison matrix" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0867" ;
-            sc:name "Sequence alignment report" ;
-            sc:sameAs "http://edamontology.org/data_0867" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0867" ;
+            sc:name "Sequence alignment report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0097 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -253929,7 +260813,7 @@ BACKGROUND:It is frequently of epidemiological and or clinical interest to estim
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/infoalign.html" .
 
 <https://bio.tools/infoalign_ws_husar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:description "Information on a multiple sequence alignment." ;
@@ -253944,14 +260828,14 @@ BACKGROUND:It is frequently of epidemiological and or clinical interest to estim
 
 <https://bio.tools/infoassembly> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
+            sc:name "Sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0622,
@@ -253986,7 +260870,7 @@ BACKGROUND:It is frequently of epidemiological and or clinical interest to estim
     sc:url "http://www.bioinformatics.nl/cgi-bin/emboss/infoassembly" .
 
 <https://bio.tools/infobase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -254016,7 +260900,7 @@ BACKGROUND:It is frequently of epidemiological and or clinical interest to estim
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/infobase.html" .
 
 <https://bio.tools/infocalc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3053,
@@ -254034,7 +260918,7 @@ BACKGROUND:It is frequently of epidemiological and or clinical interest to estim
     biotools:primaryContact "Noah A Rosenberg" .
 
 <https://bio.tools/infomap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0102,
@@ -254058,18 +260942,15 @@ This site is an extension of the paper Identifying flow modules in ecological ne
 
 <https://bio.tools/inforesidue> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1505" ;
-            sc:name "Amino acid index (molecular weight)" ;
-            sc:sameAs "http://edamontology.org/data_1505" ],
+            sc:additionalType "http://edamontology.org/data_1505" ;
+            sc:name "Amino acid index (molecular weight)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1502" ;
-            sc:name "Amino acid index (chemical classes)" ;
-            sc:sameAs "http://edamontology.org/data_1502" ] ;
+            sc:additionalType "http://edamontology.org/data_1502" ;
+            sc:name "Amino acid index (chemical classes)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1276" ;
-            sc:name "Nucleic acid features" ;
-            sc:sameAs "http://edamontology.org/data_1276" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1276" ;
+            sc:name "Nucleic acid features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -254099,7 +260980,7 @@ This site is an extension of the paper Identifying flow modules in ecological ne
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/inforesidue.html" .
 
 <https://bio.tools/inform> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3053,
@@ -254115,7 +260996,7 @@ This site is an extension of the paper Identifying flow modules in ecological ne
     biotools:primaryContact "Dario Greco" .
 
 <https://bio.tools/information-based-similarity-toolbox> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_3318 ;
@@ -254131,7 +261012,7 @@ This site is an extension of the paper Identifying flow modules in ecological ne
     biotools:primaryContact "Albert Yang" .
 
 <https://bio.tools/informed-mixer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0625,
@@ -254155,14 +261036,14 @@ Input data for MiXeR consists of summary statistics from a GWAS, and a reference
 
 <https://bio.tools/informed-proteomics> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3483" ;
-            sc:name "Spectrum" ;
-            sc:sameAs "http://edamontology.org/data_3483" ] ;
+            sc:additionalType "http://edamontology.org/data_3483" ;
+            sc:encodingFormat "http://edamontology.org/format_3244" ;
+            sc:name "Spectrum" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2032" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_3047,
@@ -254179,7 +261060,7 @@ Input data for MiXeR consists of summary statistics from a GWAS, and a reference
     sc:url "https://github.com/PNNL-Comp-Mass-Spec/Informed-Proteomics" .
 
 <https://bio.tools/informer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0209,
@@ -254197,18 +261078,18 @@ Input data for MiXeR consists of summary statistics from a GWAS, and a reference
 
 <https://bio.tools/inforna> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0880" ;
-            sc:name "RNA secondary structure" ;
-            sc:sameAs "http://edamontology.org/data_0880" ] ;
+            sc:additionalType "http://edamontology.org/data_0880" ;
+            sc:encodingFormat "http://edamontology.org/format_1457" ;
+            sc:name "RNA secondary structure" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ],
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3508" ;
+            sc:name "Image" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_3311" ;
+            sc:name "Sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:author <http://orcid.org/0000-0001-8231-3323>,
@@ -254233,14 +261114,12 @@ Input data for MiXeR consists of summary statistics from a GWAS, and a reference
 
 <https://bio.tools/infoseq> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0850" ;
-            sc:name "Sequence set" ;
-            sc:sameAs "http://edamontology.org/data_0850" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0850" ;
+            sc:name "Sequence set" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -254271,22 +261150,21 @@ Input data for MiXeR consists of summary statistics from a GWAS, and a reference
 
 <https://bio.tools/inga> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ],
+            sc:additionalType "http://edamontology.org/data_3021" ;
+            sc:name "UniProt accession" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3021" ;
-            sc:name "UniProt accession" ;
-            sc:sameAs "http://edamontology.org/data_3021" ] ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2858" ;
-            sc:name "Ontology concept" ;
-            sc:sameAs "http://edamontology.org/data_2858" ],
+            sc:additionalType "http://edamontology.org/data_2858" ;
+            sc:encodingFormat "http://edamontology.org/format_3464" ;
+            sc:name "Ontology concept" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2858" ;
-            sc:name "Ontology concept" ;
-            sc:sameAs "http://edamontology.org/data_2858" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2858" ;
+            sc:encodingFormat "http://edamontology.org/format_2062" ;
+            sc:name "Ontology concept" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API",
         "Web application" ;
     sc:applicationSubCategory edam:topic_1775 ;
@@ -254307,7 +261185,7 @@ Input data for MiXeR consists of summary statistics from a GWAS, and a reference
     biotools:primaryContact <http://orcid.org/0000-0003-4525-7793> .
 
 <https://bio.tools/ingap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_2885,
@@ -254326,7 +261204,7 @@ Input data for MiXeR consists of summary statistics from a GWAS, and a reference
         "Ji Qi" .
 
 <https://bio.tools/ingap-cdg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0622,
@@ -254343,7 +261221,7 @@ Input data for MiXeR consists of summary statistics from a GWAS, and a reference
     biotools:primaryContact "Fangqing ZhaoEmail author" .
 
 <https://bio.tools/ingap-family> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0102,
@@ -254363,7 +261241,7 @@ Input data for MiXeR consists of summary statistics from a GWAS, and a reference
     biotools:primaryContact "Ji Qi" .
 
 <https://bio.tools/ingap-sv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0102,
@@ -254384,7 +261262,7 @@ Input data for MiXeR consists of summary statistics from a GWAS, and a reference
         "Ji Qi" .
 
 <https://bio.tools/ingeneue> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2259,
@@ -254401,7 +261279,7 @@ Input data for MiXeR consists of summary statistics from a GWAS, and a reference
     biotools:primaryContact "Bill Sunderland" .
 
 <https://bio.tools/ingenuity_variant_analysis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_2885,
@@ -254419,7 +261297,7 @@ Input data for MiXeR consists of summary statistics from a GWAS, and a reference
     biotools:primaryContact "Support" .
 
 <https://bio.tools/iniflu> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0781,
@@ -254443,7 +261321,7 @@ FluConvert and IniFlu (ver.1.0.0.0701).""" ;
     sc:url "https://apps.flutures.com" .
 
 <https://bio.tools/inirf-imaging> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3344,
@@ -254461,7 +261339,7 @@ FluConvert and IniFlu (ver.1.0.0.0701).""" ;
     biotools:primaryContact "Sam Nazari" .
 
 <https://bio.tools/initro-tyr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_2814,
@@ -254479,7 +261357,7 @@ FluConvert and IniFlu (ver.1.0.0.0701).""" ;
     biotools:primaryContact "Yan Xu Close" .
 
 <https://bio.tools/inmerf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0199,
@@ -254498,7 +261376,7 @@ The Individual Meta Random Forest (InMeRF) is a tool to predict the pathogenicit
     sc:url "https://www.med.nagoya-u.ac.jp/neurogenetics/InMeRF/" .
 
 <https://bio.tools/inmex> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0203,
@@ -254520,7 +261398,7 @@ The Individual Meta Random Forest (InMeRF) is a tool to predict the pathogenicit
     biotools:primaryContact "Jeff Xia" .
 
 <https://bio.tools/innatedb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API" ;
     sc:applicationSubCategory edam:topic_0128 ;
     sc:citation <https://doi.org/10.1038/msb.2008.55> ;
@@ -254534,16 +261412,37 @@ The Individual Meta Random Forest (InMeRF) is a tool to predict the pathogenicit
     sc:softwareVersion "1" ;
     sc:url "http://www.innatedb.com/" .
 
+<https://bio.tools/inods> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0602,
+        edam:topic_3077,
+        edam:topic_3305,
+        edam:topic_3324,
+        edam:topic_3500 ;
+    sc:citation <https://doi.org/10.1371/JOURNAL.PCBI.1009604>,
+        "pmcid:PMC8758098",
+        "pubmed:34928936" ;
+    sc:description "Revealing mechanisms of infectious disease spread through empirical contact networks." ;
+    sc:featureList edam:operation_3435,
+        edam:operation_3461,
+        edam:operation_3927 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "INoDS" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/bansallab/INoDS-model" .
+
 <https://bio.tools/inparanoid> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0842" ;
-            sc:name "Identifier" ;
-            sc:sameAs "http://edamontology.org/data_0842" ] ;
+            sc:additionalType "http://edamontology.org/data_0842" ;
+            sc:name "Identifier" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0842" ;
-            sc:name "Identifier" ;
-            sc:sameAs "http://edamontology.org/data_0842" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0842" ;
+            sc:name "Identifier" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_1775,
         edam:topic_3299 ;
@@ -254558,16 +261457,32 @@ The Individual Meta Random Forest (InMeRF) is a tool to predict the pathogenicit
     sc:softwareHelp <http://inparanoid.sbc.su.se/download/current/relnotes.txt> ;
     sc:url "http://inparanoid.sbc.su.se/" .
 
+<https://bio.tools/inparanoid-diamond> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC194>,
+        "pubmed:35357425" ;
+    sc:description "Accurate and fast ortholog detection." ;
+    sc:featureList edam:operation_2421,
+        edam:operation_3663 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "InParanoid-DIAMOND" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://bitbucket.org/sonnhammergroup/inparanoid" .
+
 <https://bio.tools/inpas> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1276" ;
-            sc:name "Nucleic acid features" ;
-            sc:sameAs "http://edamontology.org/data_1276" ] ;
+            sc:additionalType "http://edamontology.org/data_1276" ;
+            sc:encodingFormat "http://edamontology.org/format_3583" ;
+            sc:name "Nucleic acid features" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1276" ;
-            sc:name "Nucleic acid features" ;
-            sc:sameAs "http://edamontology.org/data_1276" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1276" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Nucleic acid features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3170,
@@ -254588,7 +261503,7 @@ The Individual Meta Random Forest (InMeRF) is a tool to predict the pathogenicit
     biotools:primaryContact "Jianhong Ou" .
 
 <https://bio.tools/inpower> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2885,
@@ -254607,7 +261522,7 @@ The Individual Meta Random Forest (InMeRF) is a tool to predict the pathogenicit
     biotools:primaryContact "Bill Wheeler" .
 
 <https://bio.tools/inppdh> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0128,
@@ -254626,14 +261541,14 @@ The Individual Meta Random Forest (InMeRF) is a tool to predict the pathogenicit
 
 <https://bio.tools/inps> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2974" ;
-            sc:name "Protein sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_2974" ] ;
+            sc:additionalType "http://edamontology.org/data_2974" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence (raw)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0896" ;
-            sc:name "Protein report" ;
-            sc:sameAs "http://edamontology.org/data_0896" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0896" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Protein report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0130,
         edam:topic_0199 ;
@@ -254656,30 +261571,30 @@ The Individual Meta Random Forest (InMeRF) is a tool to predict the pathogenicit
 
 <https://bio.tools/inps-md> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ],
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein structure" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2974" ;
-            sc:name "Protein sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_2974" ],
+            sc:additionalType "http://edamontology.org/data_2974" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence (raw)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1008" ;
-            sc:name "Polypeptide chain ID" ;
-            sc:sameAs "http://edamontology.org/data_1008" ] ;
+            sc:additionalType "http://edamontology.org/data_1008" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Polypeptide chain ID" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0896" ;
-            sc:name "Protein report" ;
-            sc:sameAs "http://edamontology.org/data_0896" ],
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein structure" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0896" ;
-            sc:name "Protein report" ;
-            sc:sameAs "http://edamontology.org/data_0896" ],
+            sc:additionalType "http://edamontology.org/data_0896" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Protein report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0896" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Protein report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0130,
         edam:topic_0199,
@@ -254703,8 +261618,30 @@ The Individual Meta Random Forest (InMeRF) is a tool to predict the pathogenicit
     biotools:primaryContact "Castrense Savojardo",
         "Piero Fariselli" .
 
+<https://bio.tools/input> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0202,
+        edam:topic_0602,
+        edam:topic_0749,
+        edam:topic_3303 ;
+    sc:citation <https://doi.org/10.1016/J.CSBJ.2022.03.006>,
+        "pmcid:PMC8933636",
+        "pubmed:35356545" ;
+    sc:description "An intelligent network pharmacology platform unique for traditional Chinese medicine." ;
+    sc:featureList edam:operation_0224,
+        edam:operation_2436,
+        edam:operation_3927 ;
+    sc:isAccessibleForFree true ;
+    sc:name "INPUT" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://cbcb.cdutcm.edu.cn/INPUT/" .
+
 <https://bio.tools/inr-physchem> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0123,
@@ -254722,7 +261659,7 @@ The Individual Meta Random Forest (InMeRF) is a tool to predict the pathogenicit
     biotools:primaryContact "Support" .
 
 <https://bio.tools/insct> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3308,
@@ -254743,46 +261680,41 @@ a, INSCT learns a data representation, which integrates cells across batches. Th
 
 <https://bio.tools/insdc> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1103" ;
-            sc:name "EMBL/GenBank/DDBJ ID" ;
-            sc:sameAs "http://edamontology.org/data_1103" ],
+            sc:additionalType "http://edamontology.org/data_1103" ;
+            sc:name "EMBL/GenBank/DDBJ ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1103" ;
-            sc:name "EMBL/GenBank/DDBJ ID" ;
-            sc:sameAs "http://edamontology.org/data_1103" ],
+            sc:additionalType "http://edamontology.org/data_1103" ;
+            sc:name "EMBL/GenBank/DDBJ ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1103" ;
-            sc:name "EMBL/GenBank/DDBJ ID" ;
-            sc:sameAs "http://edamontology.org/data_1103" ],
+            sc:additionalType "http://edamontology.org/data_1103" ;
+            sc:name "EMBL/GenBank/DDBJ ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1103" ;
-            sc:name "EMBL/GenBank/DDBJ ID" ;
-            sc:sameAs "http://edamontology.org/data_1103" ],
+            sc:additionalType "http://edamontology.org/data_1103" ;
+            sc:name "EMBL/GenBank/DDBJ ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1103" ;
-            sc:name "EMBL/GenBank/DDBJ ID" ;
-            sc:sameAs "http://edamontology.org/data_1103" ] ;
+            sc:additionalType "http://edamontology.org/data_1103" ;
+            sc:name "EMBL/GenBank/DDBJ ID" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ],
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Nucleic acid sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ],
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Nucleic acid sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ],
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Nucleic acid sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ],
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Nucleic acid sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Nucleic acid sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0080 ;
@@ -254800,7 +261732,7 @@ a, INSCT learns a data representation, which integrates cells across batches. Th
     biotools:primaryContact "ENA Contact details" .
 
 <https://bio.tools/insect> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0622,
@@ -254817,7 +261749,7 @@ a, INSCT learns a data representation, which integrates cells across batches. Th
     biotools:primaryContact "Dr. Patricio Yankilevich" .
 
 <https://bio.tools/insector> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0623,
@@ -254837,7 +261769,7 @@ Prediction of odorant receptor genes from newly sequenced insect genomes is a di
     sc:url "http://caps.ncbs.res.in/insectOR/" .
 
 <https://bio.tools/inserm-remap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0085,
@@ -254860,7 +261792,7 @@ Prediction of odorant receptor genes from newly sequenced insect genomes is a di
     biotools:primaryContact <http://orcid.org/0000-0002-0834-7135> .
 
 <https://bio.tools/insertionmapper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3168,
@@ -254879,7 +261811,7 @@ Prediction of odorant receptor genes from newly sequenced insect genomes is a di
     biotools:primaryContact "Chunguang Du" .
 
 <https://bio.tools/insignia> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0632,
@@ -254897,7 +261829,7 @@ Prediction of odorant receptor genes from newly sequenced insect genomes is a di
     sc:url "http://insignia.cbcb.umd.edu" .
 
 <https://bio.tools/insilico_fragmentation> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2258,
         edam:topic_3172 ;
@@ -254912,7 +261844,7 @@ Prediction of odorant receptor genes from newly sequenced insect genomes is a di
     biotools:primaryContact "Oliver Fiehn" .
 
 <https://bio.tools/insilicosimmolbioexpt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0199,
@@ -254935,7 +261867,7 @@ Prediction of odorant receptor genes from newly sequenced insect genomes is a di
     biotools:primaryContact "Bikandi J." .
 
 <https://bio.tools/insilicospectro> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0121,
@@ -254953,7 +261885,7 @@ Prediction of odorant receptor genes from newly sequenced insect genomes is a di
     biotools:primaryContact "Alexandre Masselot" .
 
 <https://bio.tools/inspect> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0099,
@@ -254973,7 +261905,7 @@ Prediction of odorant receptor genes from newly sequenced insect genomes is a di
     biotools:primaryContact <http://orcid.org/0000-0003-1103-7688> .
 
 <https://bio.tools/inspect-gui> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0099,
@@ -255008,18 +261940,18 @@ GeneRegulation, RNASeq, Sequencing, Software, SystemsBiology, TimeCourse.
 
 <https://bio.tools/inspect_ms> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ],
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3653" ;
+            sc:name "Mass spectrometry spectra" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1233" ;
-            sc:name "Sequence set (protein)" ;
-            sc:sameAs "http://edamontology.org/data_1233" ] ;
+            sc:additionalType "http://edamontology.org/data_1233" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence set (protein)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Peptide identification" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -255042,7 +261974,7 @@ GeneRegulation, RNASeq, Sequencing, Software, SystemsBiology, TimeCourse.
     biotools:primaryContact "Natalie Castellana" .
 
 <https://bio.tools/inspiired> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3127,
@@ -255060,7 +261992,7 @@ GeneRegulation, RNASeq, Sequencing, Software, SystemsBiology, TimeCourse.
     biotools:primaryContact "Frederic D. Bushman" .
 
 <https://bio.tools/inspire-itk-matlab-gui> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3315,
@@ -255076,7 +262008,7 @@ GeneRegulation, RNASeq, Sequencing, Software, SystemsBiology, TimeCourse.
     biotools:primaryContact "Rex Cheung" .
 
 <https://bio.tools/inspire-utility-deform3d-image> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -255093,7 +262025,7 @@ GeneRegulation, RNASeq, Sequencing, Software, SystemsBiology, TimeCourse.
     biotools:primaryContact "Rex Cheung" .
 
 <https://bio.tools/instaGRAAL> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0102,
@@ -255122,7 +262054,7 @@ Note to OS X users: There is currently no CUDA support on Mojave (10.14) and it
     sc:url "https://github.com/koszullab/instaGRAAL" .
 
 <https://bio.tools/instadock> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0128,
@@ -255141,7 +262073,7 @@ Get in touch with Team InstaDock.""" ;
     sc:url "https://hassanlab.org/instadock" .
 
 <https://bio.tools/instantdl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3382,
@@ -255160,7 +262092,7 @@ InstantDL enables experts and non-experts to use state-of-the art deep learning
     sc:url "https://github.com/marrlab/InstantDL" .
 
 <https://bio.tools/institute_of_enzymology_servers> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0130,
@@ -255194,8 +262126,29 @@ InstantDL enables experts and non-experts to use state-of-the art deep learning
     sc:url "http://www.ttk.mta.hu/en/szolgaltatas/adatbazisok/" ;
     biotools:primaryContact "Istva´n Simon*" .
 
+<https://bio.tools/instruct-eric> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0593,
+        edam:topic_0611,
+        edam:topic_2828,
+        edam:topic_3448,
+        edam:topic_3452 ;
+    sc:citation <https://doi.org/10.3791/63435>,
+        "pubmed:34866631" ;
+    sc:description "Integrating High-End Services for Translational Research in Structural Biology." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_2421,
+        edam:operation_3457 ;
+    sc:isAccessibleForFree true ;
+    sc:name "Instruct-ERIC" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://instruct-eric.eu" .
+
 <https://bio.tools/insyght> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3053,
@@ -255212,7 +262165,7 @@ InstantDL enables experts and non-experts to use state-of-the art deep learning
     sc:url "http://genome.jouy.inra.fr/Insyght" .
 
 <https://bio.tools/int_hapmap_project> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0199,
@@ -255240,14 +262193,14 @@ InstantDL enables experts and non-experts to use state-of-the art deep learning
 
 <https://bio.tools/intaa> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ] ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein structure" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Protein features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0130 ;
     sc:author <https://orcid.org/0000-0002-0165-8707>,
@@ -255269,14 +262222,13 @@ InstantDL enables experts and non-experts to use state-of-the art deep learning
 
 <https://bio.tools/intact> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3021" ;
-            sc:name "UniProt accession" ;
-            sc:sameAs "http://edamontology.org/data_3021" ] ;
+            sc:additionalType "http://edamontology.org/data_3021" ;
+            sc:name "UniProt accession" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0906" ;
-            sc:name "Protein interaction data" ;
-            sc:sameAs "http://edamontology.org/data_0906" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0906" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Protein interaction data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0128 ;
     sc:citation <https://doi.org/10.1093/nar/gkt1115> ;
@@ -255291,7 +262243,7 @@ InstantDL enables experts and non-experts to use state-of-the art deep learning
     sc:url "http://www.ebi.ac.uk/intact/" .
 
 <https://bio.tools/intact-app> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0602,
@@ -255311,7 +262263,7 @@ InstantDL enables experts and non-experts to use state-of-the art deep learning
         "Pablo Porras" .
 
 <https://bio.tools/intad> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3168,
@@ -255333,22 +262285,22 @@ InstantDL enables experts and non-experts to use state-of-the art deep learning
 
 <https://bio.tools/intansv> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1383" ;
-            sc:name "Sequence alignment (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1383" ],
+            sc:additionalType "http://edamontology.org/data_1383" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Sequence alignment (nucleic acid)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1027" ;
-            sc:name "Gene ID (NCBI)" ;
-            sc:sameAs "http://edamontology.org/data_1027" ] ;
+            sc:additionalType "http://edamontology.org/data_1027" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Gene ID (NCBI)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0954" ;
-            sc:name "Database cross-mapping" ;
-            sc:sameAs "http://edamontology.org/data_0954" ],
+            sc:additionalType "http://edamontology.org/data_1288" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "Genome map" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1288" ;
-            sc:name "Genome map" ;
-            sc:sameAs "http://edamontology.org/data_1288" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0954" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "Database cross-mapping" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -255370,7 +262322,7 @@ InstantDL enables experts and non-experts to use state-of-the art deep learning
     biotools:primaryContact "Wen Yao" .
 
 <https://bio.tools/intapt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3170,
@@ -255390,30 +262342,30 @@ IntAPT is a C++ package to identify alternatively spliced isoforms using multipl
 
 <https://bio.tools/intarna> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3495" ;
-            sc:name "RNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3495" ] ;
+            sc:additionalType "http://edamontology.org/data_3495" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "RNA sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1270" ;
-            sc:name "Feature table" ;
-            sc:sameAs "http://edamontology.org/data_1270" ],
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3508" ;
+            sc:name "Image" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1270" ;
-            sc:name "Feature table" ;
-            sc:sameAs "http://edamontology.org/data_1270" ],
+            sc:additionalType "http://edamontology.org/data_1270" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Feature table" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1270" ;
-            sc:name "Feature table" ;
-            sc:sameAs "http://edamontology.org/data_1270" ],
+            sc:additionalType "http://edamontology.org/data_1270" ;
+            sc:encodingFormat "http://edamontology.org/format_3508" ;
+            sc:name "Feature table" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ],
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3508" ;
+            sc:name "Image" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1270" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Feature table" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:author "Patrick Wright" ;
@@ -255436,7 +262388,7 @@ IntAPT is a C++ package to identify alternatively spliced isoforms using multipl
         "Patrick Wright" .
 
 <https://bio.tools/intassoplot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0625,
@@ -255459,7 +262411,7 @@ GNU General Public License, GPLv3.""" ;
     sc:url "https://github.com/whweve/IntAssoPlot" .
 
 <https://bio.tools/intb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
@@ -255483,7 +262435,7 @@ GNU General Public License, GPLv3.""" ;
     biotools:primaryContact "José B Pereira-Leal" .
 
 <https://bio.tools/intcomp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0654,
@@ -255503,7 +262455,7 @@ GNU General Public License, GPLv3.""" ;
     biotools:primaryContact "Leo Lahti" .
 
 <https://bio.tools/intede> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0821,
@@ -255527,7 +262479,7 @@ Search for DME Entries by DME Name:.""" ;
     sc:url "https://idrblab.org/intede/" .
 
 <https://bio.tools/integral-equation-solver> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3070,
@@ -255543,7 +262495,7 @@ Search for DME Entries by DME Name:.""" ;
     biotools:primaryContact "Plamen Trayanov" .
 
 <https://bio.tools/integrall> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0602,
@@ -255566,7 +262518,7 @@ Search for DME Entries by DME Name:.""" ;
         "Thomas Jové (Curation and In numbering attributions)" .
 
 <https://bio.tools/integrate-vis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3053,
         edam:topic_3168,
@@ -255583,7 +262535,7 @@ Search for DME Entries by DME Name:.""" ;
     biotools:primaryContact "Christopher Maher's Lab" .
 
 <https://bio.tools/integrated_collection_stem_cell_bank> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_2830,
@@ -255603,7 +262555,7 @@ ICSCB is operated by CiRA,Kyoto University. It is an Intergerated Collection of
     sc:url "http://icscb.stemcellinformatics.org/" .
 
 <https://bio.tools/integratedphasing> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3518,
         edam:topic_3673 ;
@@ -255618,7 +262570,7 @@ ICSCB is operated by CiRA,Kyoto University. It is an Intergerated Collection of
     sc:url "https://github.com/vibansal/IntegratedPhasing" .
 
 <https://bio.tools/integrationmap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0654 ;
@@ -255634,7 +262586,7 @@ ICSCB is operated by CiRA,Kyoto University. It is an Intergerated Collection of
     sc:url "http://genius.embnet.dkfz-heidelberg.de/menu/cgi-bin/w2h-open/w2h.open/w2h.welcome#integrationmap" .
 
 <https://bio.tools/integrative_somatic_mutation_analysis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0769,
@@ -255655,7 +262607,7 @@ ICSCB is operated by CiRA,Kyoto University. It is an Intergerated Collection of
     biotools:primaryContact "Ettore Mosca" .
 
 <https://bio.tools/integrative_somatic_mutation_analysis_isma> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_2640 ;
@@ -255676,32 +262628,40 @@ ICSCB is operated by CiRA,Kyoto University. It is an Intergerated Collection of
 
 <https://bio.tools/integron_finder> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3497" ;
-            sc:name "DNA sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_3497" ] ;
+            sc:additionalType "http://edamontology.org/data_3497" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "DNA sequence (raw)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ],
+            sc:additionalType "http://edamontology.org/data_1270" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Feature table" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1270" ;
-            sc:name "Feature table" ;
-            sc:sameAs "http://edamontology.org/data_1270" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:encodingFormat "http://edamontology.org/format_1936" ;
+            sc:name "Sequence record" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0085,
         edam:topic_0798,
         edam:topic_3047 ;
-    sc:author "Bertrand Neron" ;
-    sc:citation <https://doi.org/10.1093/nar/gkw319> ;
-    sc:contributor "ERC EVOMOBILOME" ;
+    sc:author <https://orcid.org/0000-0002-0220-0482> ;
+    sc:citation <https://doi.org/10.1093/nar/gkw319>,
+        <https://doi.org/10.3390/microorganisms10020224> ;
+    sc:contributor <https://orcid.org/0000-0002-0878-2209>,
+        <https://orcid.org/0000-0002-8793-9584>,
+        <https://orcid.org/0000-0003-4797-6185>,
+        "ERC EVOMOBILOME",
+        "INCEPTION",
+        "Laboratoire d’Excellence IBEID Integrative Biology of Emerging Infectious Diseases" ;
     sc:description "A tool to detect Integron in DNA sequences." ;
     sc:featureList edam:operation_0239,
         edam:operation_0362,
         edam:operation_0415,
         edam:operation_3092 ;
-    sc:funder "ERC EVOMOBILOME" ;
+    sc:funder "ERC EVOMOBILOME",
+        "INCEPTION",
+        "Laboratoire d’Excellence IBEID Integrative Biology of Emerging Infectious Diseases" ;
     sc:isAccessibleForFree true ;
     sc:license "GPL-3.0" ;
     sc:name "Integron Finder" ;
@@ -255709,14 +262669,15 @@ ICSCB is operated by CiRA,Kyoto University. It is an Intergerated Collection of
         "Mac" ;
     sc:provider "Institut Pasteur" ;
     sc:softwareHelp <http://integronfinder.readthedocs.org/> ;
-    sc:softwareVersion "1.5.1" ;
+    sc:softwareVersion "1.5.1",
+        "2.0.1" ;
     sc:url "https://github.com/gem-pasteur/Integron_Finder" ;
     biotools:primaryContact "Bertrand Neron",
         "Eduardo Rocha",
         "Jean Cury" .
 
 <https://bio.tools/integron_gene_fetch> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0196,
@@ -255733,7 +262694,7 @@ ICSCB is operated by CiRA,Kyoto University. It is an Intergerated Collection of
     sc:url "http://omics.informatics.indiana.edu/integron/" .
 
 <https://bio.tools/intellipatent> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3343,
@@ -255747,8 +262708,28 @@ The first step of automating composition patent drafting is to draft the claims
     sc:name "IntelliPatent" ;
     sc:url "https://intellipatent.cmdm.tw/" .
 
+<https://bio.tools/intellipy> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_3361,
+        edam:topic_3372,
+        edam:topic_3500 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAB682>,
+        "pmcid:PMC8570781",
+        "pubmed:34601559" ;
+    sc:description "Graphical User Interface for automatic analyses of IntelliCage data in .xlsx file" ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3454 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "IntelliPy" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/NiRuff/IntelliPy" .
+
 <https://bio.tools/intemap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3168,
@@ -255762,7 +262743,7 @@ The first step of automating composition patent drafting is to draft the claims
     sc:url "http://cqb.pku.edu.cn/ZhuLab/InteMAP/index.html" .
 
 <https://bio.tools/intenz> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0821 ;
     sc:citation <https://doi.org/10.1093/nar/gkh119> ;
@@ -255777,7 +262758,7 @@ The first step of automating composition patent drafting is to draft the claims
     sc:url "http://www.ebi.ac.uk/intenz" .
 
 <https://bio.tools/interaccircos> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0114,
         edam:topic_0203,
@@ -255796,7 +262777,7 @@ The first step of automating composition patent drafting is to draft the claims
         "Yadong Wang" .
 
 <https://bio.tools/interactionset> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0622 ;
@@ -255816,7 +262797,7 @@ The first step of automating composition patent drafting is to draft the claims
     biotools:primaryContact <http://orcid.org/0000-0002-3564-4813> .
 
 <https://bio.tools/interactivecomplexheatmap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3168,
         edam:topic_3382 ;
@@ -255832,7 +262813,7 @@ The first step of automating composition patent drafting is to draft the claims
     biotools:primaryContact <https://orcid.org/0000-0002-7395-8709> .
 
 <https://bio.tools/interactivedisplay> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0091,
@@ -255851,7 +262832,7 @@ The first step of automating composition patent drafting is to draft the claims
     biotools:primaryContact "Shawn Balcome" .
 
 <https://bio.tools/interactivedisplaybase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0091,
@@ -255870,7 +262851,7 @@ The first step of automating composition patent drafting is to draft the claims
     biotools:primaryContact "Shawn Balcome" .
 
 <https://bio.tools/interactivenn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_2269,
@@ -255889,7 +262870,7 @@ The first step of automating composition patent drafting is to draft the claims
     biotools:primaryContact "Henry Heberle" .
 
 <https://bio.tools/interactiverosetta> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_2275,
@@ -255905,7 +262886,7 @@ The first step of automating composition patent drafting is to draft the claims
     biotools:primaryContact "Christopher Bystroff" .
 
 <https://bio.tools/interactome3d> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:citation <https://doi.org/10.1038/nmeth.2289>,
         "pubmed:23399932" ;
     sc:description "Network-centered approaches are increasingly used to understand the fundamentals of biology. However, the molecular details contained in the interaction networks, often necessary to understand cellular processes, are very limited, and the experimental difficulties surrounding the determination of protein complex structures make computational modeling techniques paramount. Interactome3D is a resource for the structural annotation and modeling of protein-protein interactions. Through the integration of interaction data from the main pathway repositories, we provide structural details at atomic resolution for over 12,000 protein-protein interactions in eight model organisms. Unlike static databases, Interactome3D also allows biologists to upload newly discovered interactions and pathways in any species, select the best combination of structural templates and build three-dimensional models in a fully automated manner." ;
@@ -255914,14 +262895,13 @@ The first step of automating composition patent drafting is to draft the claims
 
 <https://bio.tools/interactome_insider> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1048" ;
-            sc:name "Database ID" ;
-            sc:sameAs "http://edamontology.org/data_1048" ] ;
+            sc:additionalType "http://edamontology.org/data_1048" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Database ID" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:name "Pathway or network" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0085,
         edam:topic_0128,
@@ -255944,7 +262924,7 @@ The first step of automating composition patent drafting is to draft the claims
     biotools:primaryContact "Juan Felipe Beltrán" .
 
 <https://bio.tools/interactomeseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0621,
@@ -255968,7 +262948,7 @@ InteractomeSeq is a web server allowing domainome data analysis from either Euka
     sc:url "https://InteractomeSeq.ba.itb.cnr.it/" .
 
 <https://bio.tools/interartic> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0632,
@@ -255985,16 +262965,55 @@ InteractomeSeq is a web server allowing domainome data analysis from either Euka
     sc:url "https://github.com/Psy-Fer/interARTIC/" ;
     biotools:primaryContact <https://orcid.org/0000-0003-3861-0472> .
 
+<https://bio.tools/intercaat> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_3047 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAB596>,
+        "pubmed:34499117" ;
+    sc:description "The Interface Contact definition with Adaptable Atom Types (INTERCAAT) was developed to determine the atomic interactions between molecules that form a known three dimensional structure." ;
+    sc:featureList edam:operation_0387,
+        edam:operation_1836,
+        edam:operation_3695 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "INTERCAAT" ;
+    sc:operatingSystem "Linux",
+        "Mac" ;
+    sc:url "https://gitlab.com/fiserlab.org/intercaat" .
+
+<https://bio.tools/intercellar> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0602,
+        edam:topic_0634,
+        edam:topic_3300,
+        edam:topic_3308 ;
+    sc:citation <https://doi.org/10.1038/S42003-021-02986-2>,
+        "pmcid:PMC8752611",
+        "pubmed:35017628" ;
+    sc:description "InterCellar enables interactive analysis and exploration of cell-cell communication in single-cell transcriptomic data." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_0337,
+        edam:operation_3928 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "InterCellar" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/martaint/InterCellar" .
+
 <https://bio.tools/interelementgff> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2305" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2305" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1093/nar/gkw343>,
@@ -256010,8 +263029,29 @@ InteractomeSeq is a web server allowing domainome data analysis from either Euka
     sc:url "https://urgi.versailles.inra.fr/Tools/REPET" ;
     biotools:primaryContact "Galaxy Support Team" .
 
+<https://bio.tools/interep> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0621,
+        edam:topic_3958 ;
+    sc:citation <https://doi.org/10.3390/GENES13030544>,
+        "pmcid:PMC8950762",
+        "pubmed:35328097" ;
+    sc:description "An R Package for High-Dimensional Interaction Analysis of the Repeated Measurement Data" ;
+    sc:featureList edam:operation_3435,
+        edam:operation_3659,
+        edam:operation_3936 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-2.0" ;
+    sc:name "interep" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://cran.r-project.org/package=interep" .
+
 <https://bio.tools/interest> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3168,
         edam:topic_3170 ;
@@ -256034,30 +263074,30 @@ InteractomeSeq is a web server allowing domainome data analysis from either Euka
 
 <https://bio.tools/interevdock2> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ],
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein structure" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ],
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein structure" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ],
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ] ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2877" ;
-            sc:name "Protein complex" ;
-            sc:sameAs "http://edamontology.org/data_2877" ],
+            sc:additionalType "http://edamontology.org/data_2877" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein complex" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2877" ;
-            sc:name "Protein complex" ;
-            sc:sameAs "http://edamontology.org/data_2877" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2877" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein complex" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0128,
@@ -256078,7 +263118,7 @@ InteractomeSeq is a web server allowing domainome data analysis from either Euka
         "Jessica Andreani" .
 
 <https://bio.tools/interevol> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0081,
@@ -256098,7 +263138,7 @@ InteractomeSeq is a web server allowing domainome data analysis from either Euka
     biotools:primaryContact "Interevol coordinator" .
 
 <https://bio.tools/interface-CancerDAP> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0208,
         edam:topic_3295,
@@ -256113,7 +263153,7 @@ InteractomeSeq is a web server allowing domainome data analysis from either Euka
     sc:url "http://bio-bigdata.hrbmu.edu.cn/CancerDAP/" .
 
 <https://bio.tools/interface-LncCASE> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0659,
@@ -256129,7 +263169,7 @@ In recent years, increasing evidence has suggested that aberrant long non-coding
     sc:url "http://bio-bigdata.hrbmu.edu.cn/LncCASE/" .
 
 <https://bio.tools/interferenzy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0821,
         edam:topic_3047 ;
@@ -256150,7 +263190,7 @@ When using interferENZY, the user-provided dataset is only kept as long as inter
     sc:url "https://interferenzy.i3s.up.pt" .
 
 <https://bio.tools/interferome> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0204,
@@ -256172,7 +263212,7 @@ When using interferENZY, the user-provided dataset is only kept as long as inter
     biotools:primaryContact "Paul J. Hertzog" .
 
 <https://bio.tools/intergr8> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0621,
@@ -256191,13 +263231,13 @@ When using interferENZY, the user-provided dataset is only kept as long as inter
     biotools:primaryContact "Paul Kersey" .
 
 <https://bio.tools/interleafq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "A program to interleave and deinterleave FASTQ files" ;
     sc:name "interleafq" ;
     sc:url "https://github.com/quadram-institute-bioscience/interleafq" .
 
 <https://bio.tools/interlig> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2275,
@@ -256215,18 +263255,18 @@ When using interferENZY, the user-provided dataset is only kept as long as inter
 
 <https://bio.tools/intermap3d> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ],
+            sc:additionalType "http://edamontology.org/data_1537" ;
+            sc:encodingFormat "http://edamontology.org/format_2333" ;
+            sc:name "Protein structure report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1537" ;
-            sc:name "Protein structure report" ;
-            sc:sameAs "http://edamontology.org/data_1537" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:encodingFormat "http://edamontology.org/format_2305" ;
+            sc:name "Protein features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3534 ;
@@ -256246,7 +263286,7 @@ When using interferENZY, the user-provided dataset is only kept as long as inter
     sc:url "http://cbs.dtu.dk/services/InterMap3D/" .
 
 <https://bio.tools/intermetaldb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0154,
@@ -256270,14 +263310,14 @@ When using interferENZY, the user-provided dataset is only kept as long as inter
 
 <https://bio.tools/intermine> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ] ;
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Sequence features" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Pathway or network" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Database portal",
         "Web API",
@@ -256309,7 +263349,7 @@ When using interferENZY, the user-provided dataset is only kept as long as inter
     sc:url "http://www.intermine.org" .
 
 <https://bio.tools/interminer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0085,
         edam:topic_0121,
@@ -256342,7 +263382,7 @@ When using interferENZY, the user-provided dataset is only kept as long as inter
     biotools:primaryContact "InterMine Team" .
 
 <https://bio.tools/interolog> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0128,
@@ -256364,7 +263404,7 @@ When using interferENZY, the user-provided dataset is only kept as long as inter
         "Xiaowei Zhu" .
 
 <https://bio.tools/interolog_regulog_db> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0128,
@@ -256387,7 +263427,7 @@ When using interferENZY, the user-provided dataset is only kept as long as inter
         "Xiaowei Zhu" .
 
 <https://bio.tools/interoporc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0128,
@@ -256410,7 +263450,7 @@ When using interferENZY, the user-provided dataset is only kept as long as inter
     biotools:primaryContact "InteroPORC coordinator" .
 
 <https://bio.tools/interpeprank> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0154,
@@ -256428,7 +263468,7 @@ Abstract Motivation Peptide-protein interactions between a smaller or disordered
     sc:url "http://wallnerlab.org/InterPepRank" .
 
 <https://bio.tools/interpol> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:description "This software encodes amino acid sequences as numerical descriptor vectors using a database of currently 532 descriptors (mainly from AAindex), and normalizes sequences to uniform length with one of five linear or non-linear interpolation algorithms." ;
@@ -256443,7 +263483,7 @@ Abstract Motivation Peptide-protein interactions between a smaller or disordered
     sc:url "https://www.uni-due.de/~hy0546/Interpol/" .
 
 <https://bio.tools/interpopula> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_3053,
@@ -256461,7 +263501,7 @@ Abstract Motivation Peptide-protein interactions between a smaller or disordered
     biotools:primaryContact "Support" .
 
 <https://bio.tools/interpred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_2275,
@@ -256478,21 +263518,70 @@ Abstract Motivation Peptide-protein interactions between a smaller or disordered
     sc:url "http://bioinfo.ifm.liu.se/inter/interpred/" ;
     biotools:primaryContact "Björn Wallner" .
 
+<https://bio.tools/interpretable-admet> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_3407,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC192>,
+        "pubmed:35348618" ;
+    sc:description "A freely available server for ADMET properties evaluation, model interpretation and chemical optimization." ;
+    sc:featureList edam:operation_2429,
+        edam:operation_3659,
+        edam:operation_3927 ;
+    sc:isAccessibleForFree true ;
+    sc:name "interpretable-ADMET" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://cadd.pharmacy.nankai.edu.cn/interpretableadmet/" .
+
 <https://bio.tools/interpro> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1133" ;
-            sc:name "InterPro accession" ;
-            sc:sameAs "http://edamontology.org/data_1133" ] ;
+            sc:additionalType "http://edamontology.org/data_1133" ;
+            sc:name "InterPro accession" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1355" ;
-            sc:name "Protein signature" ;
-            sc:sameAs "http://edamontology.org/data_1355" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1355" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Protein signature" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0157,
         edam:topic_0623 ;
-    sc:citation <https://doi.org/10.1093/nar/gkw1107> ;
+    sc:citation <https://doi.org/10.1007/978-1-60761-977-2_3>,
+        <https://doi.org/10.1093/bib/3.3.225>,
+        <https://doi.org/10.1093/nar/29.1.37>,
+        <https://doi.org/10.1093/nar/gkaa977>,
+        <https://doi.org/10.1093/nar/gkg046>,
+        <https://doi.org/10.1093/nar/gki106>,
+        <https://doi.org/10.1093/nar/gkl841>,
+        <https://doi.org/10.1093/nar/gkn785>,
+        <https://doi.org/10.1093/nar/gkr948>,
+        <https://doi.org/10.1093/nar/gku1243>,
+        <https://doi.org/10.1093/nar/gkw1107>,
+        <https://doi.org/10.1093/nar/gky1100>,
+        "pmcid:PMC165493",
+        "pmcid:PMC1899100",
+        "pmcid:PMC2686546",
+        "pmcid:PMC3245097",
+        "pmcid:PMC4383996",
+        "pmcid:PMC5210578",
+        "pmcid:PMC540060",
+        "pmcid:PMC7778928",
+        "pubmed:11125043",
+        "pubmed:12230031",
+        "pubmed:12520011",
+        "pubmed:15608177",
+        "pubmed:17202162",
+        "pubmed:18940856",
+        "pubmed:21082426",
+        "pubmed:22096229",
+        "pubmed:25428371",
+        "pubmed:27899635",
+        "pubmed:30398656",
+        "pubmed:33156333" ;
     sc:description "Protein families, domains, regions, repeats and sites in which identifiable features found in known proteins can be applied to new protein sequences." ;
     sc:featureList edam:operation_0224 ;
     sc:name "InterPro" ;
@@ -256505,24 +263594,26 @@ Abstract Motivation Peptide-protein interactions between a smaller or disordered
 
 <https://bio.tools/interproscan_4> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:name "Protein sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ],
+            sc:additionalType "http://edamontology.org/data_0858" ;
+            sc:name "Sequence signature matches" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0858" ;
-            sc:name "Sequence signature matches" ;
-            sc:sameAs "http://edamontology.org/data_0858" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:name "Protein features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0623 ;
     sc:author "InterPro team",
         "Web Production" ;
-    sc:citation <https://doi.org/10.1093/bioinformatics/btu031> ;
+    sc:citation <https://doi.org/10.1093/bioinformatics/17.9.847>,
+        <https://doi.org/10.1093/bioinformatics/btu031>,
+        <https://doi.org/10.1093/nar/gki442>,
+        "pmcid:PMC1160203",
+        "pubmed:11590104",
+        "pubmed:15980438" ;
     sc:description "Scan sequences against the InterPro protein signature databases." ;
     sc:featureList edam:operation_0239,
         edam:operation_3092 ;
@@ -256538,7 +263629,7 @@ Abstract Motivation Peptide-protein interactions between a smaller or disordered
     biotools:primaryContact "Web Production" .
 
 <https://bio.tools/interproscan_ws> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btu031> ;
@@ -256553,7 +263644,7 @@ Abstract Motivation Peptide-protein interactions between a smaller or disordered
     sc:url "http://www.ebi.ac.uk/Tools/webservices/services/pfa/iprscan5_rest" .
 
 <https://bio.tools/intersect-sets> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3070,
@@ -256569,7 +263660,7 @@ Abstract Motivation Peptide-protein interactions between a smaller or disordered
     biotools:primaryContact "Nick" .
 
 <https://bio.tools/intersim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2259,
         edam:topic_2640,
@@ -256589,7 +263680,7 @@ Abstract Motivation Peptide-protein interactions between a smaller or disordered
     biotools:primaryContact "Prabhakar Chalise" .
 
 <https://bio.tools/interspia> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0154,
@@ -256607,7 +263698,7 @@ Abstract Motivation Peptide-protein interactions between a smaller or disordered
     sc:url "http://bioinfo.konkuk.ac.kr/INTERSPIA/" .
 
 <https://bio.tools/intertads> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0203,
@@ -256629,7 +263720,7 @@ InterTADs is an open-source tool written in R, for integrating multi-omics data
     sc:url "https://github.com/BiodataAnalysisGroup/InterTADs" .
 
 <https://bio.tools/intervar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0208,
         edam:topic_3325,
@@ -256651,14 +263742,14 @@ InterTADs is an open-source tool written in R, for integrating multi-omics data
 
 <https://bio.tools/intervene> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0850" ;
-            sc:name "Sequence set" ;
-            sc:sameAs "http://edamontology.org/data_0850" ] ;
+            sc:additionalType "http://edamontology.org/data_0850" ;
+            sc:encodingFormat "http://edamontology.org/format_3003" ;
+            sc:name "Sequence set" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0850" ;
-            sc:name "Sequence set" ;
-            sc:sameAs "http://edamontology.org/data_0850" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0850" ;
+            sc:encodingFormat "http://edamontology.org/format_3604" ;
+            sc:name "Sequence set" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_3307 ;
@@ -256679,7 +263770,7 @@ InterTADs is an open-source tool written in R, for integrating multi-omics data
     biotools:primaryContact <https://orcid.org/0000-0002-6459-6224> .
 
 <https://bio.tools/intfold> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0130,
@@ -256700,7 +263791,7 @@ InterTADs is an open-source tool written in R, for integrating multi-omics data
     biotools:primaryContact "Dr Liam J. McGuffin" .
 
 <https://bio.tools/intogen> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0622 ;
@@ -256728,18 +263819,18 @@ InterTADs is an open-source tool written in R, for integrating multi-omics data
 
 <https://bio.tools/intomics> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1009" ;
-            sc:name "Protein name" ;
-            sc:sameAs "http://edamontology.org/data_1009" ],
+            sc:additionalType "http://edamontology.org/data_1009" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Protein name" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ] ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Expression data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602 ;
     sc:description "Tool for integrating secretomics and transcriptomics data in order to uncover paracrine cell crosstalk mechanisms." ;
@@ -256754,7 +263845,7 @@ InterTADs is an open-source tool written in R, for integrating multi-omics data
     sc:url "https://github.com/herrsalmi/IntOmics/" .
 
 <https://bio.tools/intpred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0160,
@@ -256771,7 +263862,7 @@ InterTADs is an open-source tool written in R, for integrating multi-omics data
     biotools:primaryContact "Andrew Martin" .
 
 <https://bio.tools/intramirexplorer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2269,
@@ -256789,7 +263880,7 @@ InterTADs is an open-source tool written in R, for integrating multi-omics data
     biotools:primaryContact "Surajit Bhattacharya" .
 
 <https://bio.tools/intransbo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0659,
         edam:topic_0780,
@@ -256806,7 +263897,7 @@ The Bougainvillea is a genus of thorny ornamental vines, bushes, or trees.""" ;
     sc:url "http://www.bio-add.org/InTransBo/index.jsp" .
 
 <https://bio.tools/intreped> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0654,
@@ -256825,7 +263916,7 @@ The Bougainvillea is a genus of thorny ornamental vines, bushes, or trees.""" ;
     sc:url "http://sunflower.kuicr.kyoto-u.ac.jp/~jbbrown/dnaRepairPrediction/v2/index.py" .
 
 <https://bio.tools/intrepid> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -256848,7 +263939,7 @@ The Bougainvillea is a genus of thorny ornamental vines, bushes, or trees.""" ;
     biotools:primaryContact "Kimmen Sjölander" .
 
 <https://bio.tools/introgress> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0114,
@@ -256866,7 +263957,7 @@ The Bougainvillea is a genus of thorny ornamental vines, bushes, or trees.""" ;
     sc:url "http://www.uwyo.edu/buerkle/software/introgress/" .
 
 <https://bio.tools/introspect> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -256884,7 +263975,7 @@ The Bougainvillea is a genus of thorny ornamental vines, bushes, or trees.""" ;
     sc:url "https://github.com/BGI2016/IntroSpect" .
 
 <https://bio.tools/intscore> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0128,
@@ -256902,7 +263993,7 @@ The Bougainvillea is a genus of thorny ornamental vines, bushes, or trees.""" ;
     sc:url "http://intscore.molgen.mpg.de" .
 
 <https://bio.tools/intside> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btu688>,
         "pubmed:25380960" ;
     sc:description "Drug side effects are one of the main health threats worldwide, and an important obstacle in drug development. Understanding how adverse reactions occur requires knowledge on drug mechanisms at the molecular level. Despite recent advances, the need for tools and methods that facilitate side effect anticipation still remains. IntSide is a web server to elucidate the molecular processes involved in drug side effects through the integration of chemistry and biology. IntSide currently catalogues 1,175 side effects caused by 996 drugs, associated with drug features divided into eight categories, belonging to either biology or chemistry. On the biological side, IntSide reports drug targets and off-targets, pathways, molecular functions and biological processes. From a chemical viewpoint, it includes molecular fingerprints, scaffolds and chemical entities." ;
@@ -256910,7 +264001,7 @@ The Bougainvillea is a genus of thorny ornamental vines, bushes, or trees.""" ;
     sc:url "https://intside.irbbarcelona.org" .
 
 <https://bio.tools/intsim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0654,
@@ -256925,7 +264016,7 @@ The Bougainvillea is a genus of thorny ornamental vines, bushes, or trees.""" ;
     sc:url "https://sourceforge.net/projects/intsim/" .
 
 <https://bio.tools/intsplice> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3320,
@@ -256941,7 +264032,7 @@ The Bougainvillea is a genus of thorny ornamental vines, bushes, or trees.""" ;
     sc:url "http://www.med.nagoya-u.ac.jp/neurogenetics/IntSplice/" .
 
 <https://bio.tools/inuc-pseknc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_3125,
@@ -256957,8 +264048,29 @@ The Bougainvillea is a genus of thorny ornamental vines, bushes, or trees.""" ;
     sc:url "http://lin.uestc.edu.cn/server/iNuc-PseKNC" ;
     biotools:primaryContact "Hao Lin" .
 
+<https://bio.tools/inucs> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0091,
+        edam:topic_0621,
+        edam:topic_3176 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAB698>,
+        "pmcid:PMC8652021",
+        "pubmed:34623394" ;
+    sc:description "Given nucleosome genomic coordinates, ligation junctions (in pairs format) produced by the Pairtools program, the inucs command line tool identifies interactions falling into different nucleosomes and counts them." ;
+    sc:featureList edam:operation_0335,
+        edam:operation_0337,
+        edam:operation_3802 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "iNucs" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/Karimi-Lab/inucs/" .
+
 <https://bio.tools/invacost> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_2269,
@@ -256979,7 +264091,7 @@ This approach is generalisable to any subset of the InvaCost database, regardles
     sc:url "https://github.com/Farewe/invacost" .
 
 <https://bio.tools/invbfm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
@@ -257001,7 +264113,7 @@ Both fixRealData and fixSimuData are written in Shell for data preprocessing. In
     sc:url "https://github.com/wzj1234/InvBFM" .
 
 <https://bio.tools/invclust> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_3175 ;
@@ -257016,7 +264128,7 @@ Both fixRealData and fixSimuData are written in Shell for data preprocessing. In
     sc:url "https://github.com/isglobal-brge/invClust" .
 
 <https://bio.tools/inverse-gradient> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344 ;
@@ -257031,7 +264143,7 @@ Both fixRealData and fixSimuData are written in Shell for data preprocessing. In
     biotools:primaryContact "Patrick Lu" .
 
 <https://bio.tools/inversion> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -257050,8 +264162,28 @@ Both fixRealData and fixSimuData are written in Shell for data preprocessing. In
     sc:url "http://bioconductor.org/packages/release/bioc/html/inveRsion.html" ;
     biotools:primaryContact "Alejandro Caceres" .
 
+<https://bio.tools/invertebratefungi> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0621,
+        edam:topic_0637,
+        edam:topic_0780,
+        edam:topic_3068,
+        edam:topic_3407 ;
+    sc:citation <https://doi.org/10.1093/DATABASE/BAAC021>,
+        "pmcid:PMC9216569",
+        "pubmed:35363307" ;
+    sc:description "An expert-curated web-based platform for the identification and classification of invertebrate-associated fungi and fungus-like organisms." ;
+    sc:featureList edam:operation_3460 ;
+    sc:isAccessibleForFree true ;
+    sc:name "invertebratefungi" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://invertebratefungi.org/" .
+
 <https://bio.tools/invertyper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2885,
@@ -257074,7 +264206,7 @@ Both fixRealData and fixSimuData are written in Shell for data preprocessing. In
     sc:url "https://github.com/vincent-hanlon/InvertypeR" .
 
 <https://bio.tools/investigation_of_non_canonical_splice_sites> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_3307 ;
     sc:author <https://orcid.org/0000-0002-3321-7471> ;
@@ -257094,7 +264226,7 @@ Both fixRealData and fixSimuData are written in Shell for data preprocessing. In
     biotools:primaryContact <https://orcid.org/0000-0002-3321-7471> .
 
 <https://bio.tools/invfest> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
@@ -257117,26 +264249,8 @@ Both fixRealData and fixSimuData are written in Shell for data preprocessing. In
     sc:softwareHelp <http://invfestdb.uab.cat/help.php> ;
     sc:url "http://invfestdb.uab.cat/" .
 
-<https://bio.tools/invitrodiagnostics> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0199,
-        edam:topic_2640,
-        edam:topic_3168,
-        edam:topic_3407,
-        edam:topic_3473 ;
-    sc:citation <https://doi.org/10.7287/PEERJ.PREPRINTS.27338V1> ;
-    sc:description """Passenger mutations as a target for the personalized therapy of cancer.
-
-The American FDA approved the first comprehensive NGS diagnostic assay for cancer at the end of 2017, leading the way to personalised therapy of cancer and the massive employ of bioinformatics (https: www.fda.gov downloads medicaldevices productsandmedicalprocedures invitrodiagnostics ucm584603.pdf ). In NGS-detected genes from cancer patients, driver and passenger mutations can be distinguished. The former provides a proliferative advantage to cancer cells and are commonly found, the latter do not provide proliferative fitness and are different in different patients. However, some passenger mutations might occur in genes involved in metabolism and could be mildly deleterious for cancer cells.
-
-||| HOMEPAGE BROKEN!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'passenger', 'DrugBank' (bio.tools/drugbank), 'ucm584603.pdf', 'NGS-detected'""" ;
-    sc:featureList edam:operation_3202 ;
-    sc:name "invitrodiagnostics" ;
-    sc:url "https://www.fda.gov/downloads/medicaldevices/productsandmedicalprocedures/invitrodiagnostics/" .
-
 <https://bio.tools/ioat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3360,
@@ -257159,7 +264273,7 @@ The American FDA approved the first comprehensive NGS diagnostic assay for cance
     sc:url "https://github.com/WlSunshine/IOAT-software" .
 
 <https://bio.tools/iobio> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0769 ;
     sc:citation <https://doi.org/10.1038/nmeth.3174>,
@@ -257177,7 +264291,7 @@ iobio uses immediate visual feedback to make understanding complex genomic datas
     biotools:primaryContact "iobio Support" .
 
 <https://bio.tools/iocbio> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_2259,
         edam:topic_3070,
@@ -257194,7 +264308,7 @@ iobio uses immediate visual feedback to make understanding complex genomic datas
     biotools:primaryContact "Marko Vendelin" .
 
 <https://bio.tools/ioda> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0602,
@@ -257217,7 +264331,7 @@ iODA is a graphical user interface (GUI) local tool with the aim of integrating
     sc:url "http://www.sysbio.org.cn/iODA" .
 
 <https://bio.tools/iodata> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0176,
         edam:topic_2258,
@@ -257235,7 +264349,7 @@ IOData is a HORTON 3 module for input/output of quantum chemistry file formats.
     sc:url "https://github.com/theochem/iodata" .
 
 <https://bio.tools/iodine> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_3334,
         edam:topic_3390,
@@ -257253,7 +264367,7 @@ IOData is a HORTON 3 module for input/output of quantum chemistry file formats.
     sc:url "https://www.ars.usda.gov/northeast-area/beltsville-md-bhnrc/beltsville-human-nutrition-research-center/methods-and-application-of-food-composition-laboratory/mafcl-site-pages/iodine/" .
 
 <https://bio.tools/iom> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Web application" ;
     sc:applicationSubCategory edam:topic_3520 ;
@@ -257272,7 +264386,7 @@ IOData is a HORTON 3 module for input/output of quantum chemistry file formats.
     biotools:primaryContact "Jan Fesl" .
 
 <https://bio.tools/iomics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0659,
@@ -257295,7 +264409,7 @@ IOData is a HORTON 3 module for input/output of quantum chemistry file formats.
         "InterpretOmics Support" .
 
 <https://bio.tools/ionbreeders> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0199,
@@ -257322,7 +264436,7 @@ The National Agriculture and Food Research Organization (hereinafter referred to
     sc:url "https://github.com/DEMETER298/IonBreeders" .
 
 <https://bio.tools/ioncram> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0622,
@@ -257338,8 +264452,31 @@ IonCram is the first compression tool that efficiently compresses the Ion Torren
     sc:name "IonCRAM" ;
     sc:url "https://github.com/ionCRAM/ionCRAM" .
 
+<https://bio.tools/ionflow> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Script" ;
+    sc:applicationSubCategory edam:topic_0769,
+        edam:topic_0780,
+        edam:topic_2229,
+        edam:topic_3173,
+        edam:topic_3520 ;
+    sc:citation <https://doi.org/10.1007/S11306-021-01841-Z>,
+        "pmcid:PMC8464566",
+        "pubmed:34562172" ;
+    sc:description "Galaxy tool for processing and analysis of ionomics data , based on the modification of R package IonFlow." ;
+    sc:featureList edam:operation_2436,
+        edam:operation_2939,
+        edam:operation_3891,
+        edam:operation_3960 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "IonFlow" ;
+    sc:operatingSystem "Linux" ;
+    sc:url "https://github.com/wanchanglin/ionflow" .
+
 <https://bio.tools/iongap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0622,
@@ -257360,18 +264497,17 @@ IonCram is the first compression tool that efficiently compresses the Ion Torren
 
 <https://bio.tools/ioniser> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3108" ;
-            sc:name "Experimental measurement" ;
-            sc:sameAs "http://edamontology.org/data_3108" ] ;
+            sc:additionalType "http://edamontology.org/data_3108" ;
+            sc:encodingFormat "http://edamontology.org/format_2333" ;
+            sc:name "Experimental measurement" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2887" ;
-            sc:name "Nucleic acid sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2887" ],
+            sc:additionalType "http://edamontology.org/data_2887" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Nucleic acid sequence record" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:author "Mike Smith" ;
@@ -257390,7 +264526,7 @@ IonCram is the first compression tool that efficiently compresses the Ion Torren
     biotools:primaryContact "Mike Smith" .
 
 <https://bio.tools/ionmf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0659,
@@ -257405,7 +264541,7 @@ IonCram is the first compression tool that efficiently compresses the Ion Torren
     biotools:primaryContact "University of Ljubljana Faculty of Computer and Information Science" .
 
 <https://bio.tools/iontobioethics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_3063,
@@ -257423,7 +264559,7 @@ IonCram is the first compression tool that efficiently compresses the Ion Torren
     sc:url "https://www.iontobioethics.org" .
 
 <https://bio.tools/iontree> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -257442,7 +264578,7 @@ IonCram is the first compression tool that efficiently compresses the Ion Torren
     biotools:primaryContact "Mingshu Cao" .
 
 <https://bio.tools/iori-enst> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0203,
@@ -257459,7 +264595,7 @@ IonCram is the first compression tool that efficiently compresses the Ion Torren
     biotools:primaryContact <https://orcid.org/0000-0001-8786-0940> .
 
 <https://bio.tools/iori-euk> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0196,
@@ -257478,7 +264614,7 @@ DNA replication is a key step in maintaining the stable transmission of genetic
     sc:url "http://lin-group.cn/server/iORI-Euk/" .
 
 <https://bio.tools/iot-flock> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3318,
@@ -257492,7 +264628,7 @@ IoT-Flock is an open-source tool for IoT traffic generation which supports the t
     sc:url "https://github.com/ThingzDefense/IoT-Flock" .
 
 <https://bio.tools/iot-stream> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0621,
@@ -257514,7 +264650,7 @@ T. Elsaleh, M. Bermudez-Edo, S. Enshaeifar, S. T. Acton, R. Rezvani and P. Barna
     sc:url "http://iot.ee.surrey.ac.uk/iot-crawler/ontology/iot-stream" .
 
 <https://bio.tools/ip4m> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3172,
@@ -257533,8 +264669,15 @@ BACKGROUND:Metabolomics data analyses rely on the use of bioinformatics tools. M
     sc:name "IP4M" ;
     sc:url "https://github.com/IP4M" .
 
+<https://bio.tools/ipa_hifi> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:description "Improved Phased Assembler (IPA) is the official PacBio software for HiFi genome assembly. IPA was designed to utilize the accuracy of PacBio HiFi reads to produce high-quality phased genome assemblies" ;
+    sc:name "IPA HiFi" ;
+    sc:softwareVersion "1.8.0" ;
+    sc:url "https://github.com/PacificBiosciences/pbipa" .
+
 <https://bio.tools/ipac> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0078,
@@ -257554,7 +264697,7 @@ BACKGROUND:Metabolomics data analyses rely on the use of bioinformatics tools. M
     biotools:primaryContact "Gregory Ryslik" .
 
 <https://bio.tools/ipage> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3174,
@@ -257570,7 +264713,7 @@ BACKGROUND:Metabolomics data analyses rely on the use of bioinformatics tools. M
     sc:url "https://tavazoielab.c2b2.columbia.edu/iPAGE/" .
 
 <https://bio.tools/ipanemap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0097,
@@ -257592,7 +264735,7 @@ IPANEMAP is a software for predicting stable RNA secondary structures compatible
     sc:url "https://github.com/afafbioinfo/IPANEMAP" .
 
 <https://bio.tools/iparts> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0097,
@@ -257608,7 +264751,7 @@ IPANEMAP is a software for predicting stable RNA secondary structures compatible
     biotools:primaryContact "Chin Lung Lu" .
 
 <https://bio.tools/ipass> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -257627,7 +264770,7 @@ IPANEMAP is a software for predicting stable RNA secondary structures compatible
         <https://orcid.org/0000-0002-5681-1043> .
 
 <https://bio.tools/ipat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0625,
@@ -257645,34 +264788,28 @@ IPANEMAP is a software for predicting stable RNA secondary structures compatible
 
 <https://bio.tools/ipath> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1011" ;
-            sc:name "EC number" ;
-            sc:sameAs "http://edamontology.org/data_1011" ],
+            sc:additionalType "http://edamontology.org/data_2384" ;
+            sc:name "IPI protein ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2764" ;
-            sc:name "Protein name (UniProt)" ;
-            sc:sameAs "http://edamontology.org/data_2764" ],
+            sc:additionalType "http://edamontology.org/data_1027" ;
+            sc:name "Gene ID (NCBI)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2384" ;
-            sc:name "IPI protein ID" ;
-            sc:sameAs "http://edamontology.org/data_2384" ],
+            sc:additionalType "http://edamontology.org/data_2764" ;
+            sc:name "Protein name (UniProt)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1027" ;
-            sc:name "Gene ID (NCBI)" ;
-            sc:sameAs "http://edamontology.org/data_1027" ],
+            sc:additionalType "http://edamontology.org/data_1011" ;
+            sc:name "EC number" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2302" ;
-            sc:name "STRING ID" ;
-            sc:sameAs "http://edamontology.org/data_2302" ],
+            sc:additionalType "http://edamontology.org/data_2343" ;
+            sc:name "Pathway ID (KEGG)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2343" ;
-            sc:name "Pathway ID (KEGG)" ;
-            sc:sameAs "http://edamontology.org/data_2343" ] ;
+            sc:additionalType "http://edamontology.org/data_2302" ;
+            sc:name "STRING ID" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2082" ;
-            sc:name "Matrix" ;
-            sc:sameAs "http://edamontology.org/data_2082" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2082" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Matrix" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3174 ;
@@ -257698,7 +264835,7 @@ IPANEMAP is a software for predicting stable RNA secondary structures compatible
     biotools:primaryContact <https://orcid.org/0000-0003-1429-7485> .
 
 <https://bio.tools/ipath_IMIM> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description """iPath is a tool developed by IMIM which provides mechanistic hypotheses for drug adverse events. iPath aims at identifying pathways in functional networks that connect drug targets, off-targets, ADME proteins and proteins associated to the toxicity phenotype elicited by a drug. It leverages information from diverse omics datasets, namely protein interaction networks, toxicogenomics data, gene and protein expression data, genotype-phenotype associations and chemical biology information. 
 iPath uses as input tissue/organ-specific protein interaction networks and a list of genes of interest (seed genes), and after mapping the seeds to the network it applies network optimisation algorithms to identify the subnetwork. It can be used to identify molecular pathways related to drug toxicity.""" ;
     sc:name "iPath" ;
@@ -257706,7 +264843,7 @@ iPath uses as input tissue/organ-specific protein interaction networks and a lis
     sc:url "http://sbi.imim.es/data/ipath.tgz" .
 
 <https://bio.tools/ipathwayguide> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0203,
@@ -257730,7 +264867,7 @@ iPath uses as input tissue/organ-specific protein interaction networks and a lis
         "Gil Mor" .
 
 <https://bio.tools/ipavs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0634,
@@ -257751,7 +264888,7 @@ iPath uses as input tissue/organ-specific protein interaction networks and a lis
     biotools:primaryContact "ipavs Admin" .
 
 <https://bio.tools/ipba> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -257773,7 +264910,7 @@ iPath uses as input tissue/organ-specific protein interaction networks and a lis
     biotools:primaryContact "Agnel Praveen Joseph" .
 
 <https://bio.tools/ipbt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2269,
@@ -257790,14 +264927,13 @@ iPath uses as input tissue/organ-specific protein interaction networks and a lis
 
 <https://bio.tools/ipc> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:name "Protein sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1528" ;
-            sc:name "Protein isoelectric point" ;
-            sc:sameAs "http://edamontology.org/data_1528" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1528" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Protein isoelectric point" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -257822,7 +264958,7 @@ iPath uses as input tissue/organ-specific protein interaction networks and a lis
     biotools:primaryContact <http://orcid.org/0000-0001-8187-1980> .
 
 <https://bio.tools/ipcarf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_0659,
@@ -257840,7 +264976,7 @@ iPath uses as input tissue/organ-specific protein interaction networks and a lis
     biotools:primaryContact <https://orcid.org/0000-0002-5473-323X> .
 
 <https://bio.tools/ipcoal> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0084,
@@ -257865,7 +265001,7 @@ Free document hosting provided by Read the Docs.""" ;
     sc:url "https://github.com/pmckenz1/ipcoal/" .
 
 <https://bio.tools/ipcwswitch> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2269,
@@ -257877,7 +265013,7 @@ Free document hosting provided by Read the Docs.""" ;
     sc:url "https://cran.r-project.org/web/packages/ipcwswitch/index.html" .
 
 <https://bio.tools/ipd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0804,
@@ -257899,7 +265035,7 @@ Free document hosting provided by Read the Docs.""" ;
     biotools:primaryContact "Contact Form" .
 
 <https://bio.tools/ipd-imgt_hla> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0199,
@@ -257920,7 +265056,7 @@ Free document hosting provided by Read the Docs.""" ;
     biotools:primaryContact "Contact Form" .
 
 <https://bio.tools/ipd-pathogen> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0089,
@@ -257943,7 +265079,7 @@ Free document hosting provided by Read the Docs.""" ;
     biotools:primaryContact <https://orcid.org/0000-0002-1119-4774> .
 
 <https://bio.tools/ipd-pipeline> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0622,
@@ -257969,7 +265105,7 @@ IPD is an in-silico GUI-based automated pathogen analysis pipeline for seamless
     sc:url "http://www.actrec.gov.in/pi-webpages/AmitDutt/IPD/IPD.html" .
 
 <https://bio.tools/ipda> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0157,
@@ -257988,8 +265124,31 @@ IPD is an in-silico GUI-based automated pathogen analysis pipeline for seamless
     sc:url "http://biominer.bime.ntu.edu.tw/ipda/" ;
     biotools:primaryContact "Chien-Yu Chen" .
 
+<https://bio.tools/ipdb> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0659,
+        edam:topic_3170,
+        edam:topic_3500 ;
+    sc:citation <https://doi.org/10.1186/S12864-021-08071-6>,
+        "pmcid:PMC8549166",
+        "pubmed:34702185" ;
+    sc:description "A PIWI-bound piRNAs database to mining NGS sncRNA data and beyond." ;
+    sc:featureList edam:operation_0463,
+        edam:operation_2421,
+        edam:operation_3792 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "IPdb" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://ipdb2.shinyapps.io/ipdb2/" .
+
 <https://bio.tools/ipdfromkm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0102,
@@ -258010,7 +265169,7 @@ An implementation to reconstruct individual patient data from Kaplan-Meier (K-M)
     sc:url "http://trialdesign.org/one-page-shell.html#IPDfromKM" .
 
 <https://bio.tools/ipdmada> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_2269 ;
     sc:citation <https://doi.org/10.1002/JRSM.1444>,
@@ -258022,7 +265181,7 @@ An implementation to reconstruct individual patient data from Kaplan-Meier (K-M)
     sc:url "https://jwang7.shinyapps.io/ipdmada/" .
 
 <https://bio.tools/ipdmr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3295,
@@ -258044,7 +265203,7 @@ Tool kits for quanlity control, analysis and visulization of Illumina DNA methyl
     sc:url "https://bioconductor.org/packages/release/bioc/html/ENmix.html" .
 
 <https://bio.tools/ipgwas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3053,
@@ -258062,7 +265221,7 @@ Tool kits for quanlity control, analysis and visulization of Illumina DNA methyl
         "You-QiangSong" .
 
 <https://bio.tools/iphys> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3300,
         edam:topic_3304,
@@ -258079,14 +265238,13 @@ In the past few years a lot of attention has been given to methods for remotely
 
 <https://bio.tools/ipi> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2384" ;
-            sc:name "IPI protein ID" ;
-            sc:sameAs "http://edamontology.org/data_2384" ] ;
+            sc:additionalType "http://edamontology.org/data_2384" ;
+            sc:name "IPI protein ID" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Sequence record" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0085,
@@ -258101,7 +265259,7 @@ In the past few years a lot of attention has been given to methods for remotely
     sc:url "http://www.ebi.ac.uk/IPI" .
 
 <https://bio.tools/ipick> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0593,
@@ -258121,7 +265279,7 @@ In the past few years a lot of attention has been given to methods for remotely
         "Woonghee Lee" .
 
 <https://bio.tools/ipig> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0654,
@@ -258138,8 +265296,32 @@ In the past few years a lot of attention has been given to methods for remotely
     sc:softwareVersion "r5" ;
     sc:url "http://sourceforge.net/projects/ipig/" .
 
+<https://bio.tools/ipjgl> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0199,
+        edam:topic_0602,
+        edam:topic_2269,
+        edam:topic_2640,
+        edam:topic_3170 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAB751>,
+        "pmcid:PMC8756181",
+        "pubmed:34718410" ;
+    sc:description "Importance-Penalized Joint Graphical Lasso (IPJGL)." ;
+    sc:featureList edam:operation_3223,
+        edam:operation_3463,
+        edam:operation_3625,
+        edam:operation_3927 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "IPJGL" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/Wu-Lab/IPJGL" .
+
 <https://bio.tools/ipk-cats> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:citation <https://doi.org/10.1016/j.jbiotec.2017.07.006>,
         <https://doi.org/10.1093/bioinformatics/btx198>,
         <https://doi.org/10.1111/tpj.14645>,
@@ -258153,14 +265335,14 @@ In the past few years a lot of attention has been given to methods for remotely
 
 <https://bio.tools/ipk_blast> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_2546" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1921" ;
+            sc:name "Sequence alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3053 ;
     sc:citation <https://doi.org/10.3835/plantgenome2015.06.0038> ;
@@ -258178,7 +265360,7 @@ In the past few years a lot of attention has been given to methods for remotely
     biotools:primaryContact "Dr. Uwe Scholz" .
 
 <https://bio.tools/ipknot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0082,
@@ -258198,7 +265380,7 @@ In the past few years a lot of attention has been given to methods for remotely
     sc:url "http://rtips.dna.bio.keio.ac.jp/ipknot/" .
 
 <https://bio.tools/ipnhot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0082,
@@ -258217,7 +265399,7 @@ A webserver for identifying protein-nucleic acid interfaces hotspot residues. iP
     sc:url "http://zhulab.ahu.edu.cn/iPNHOT/" .
 
 <https://bio.tools/ipo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -258238,7 +265420,7 @@ A webserver for identifying protein-nucleic acid interfaces hotspot residues. iP
     biotools:primaryContact "Thomas Riebenbauer" .
 
 <https://bio.tools/ipp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_3293 ;
@@ -258252,7 +265434,7 @@ A webserver for identifying protein-nucleic acid interfaces hotspot residues. iP
     biotools:primaryContact "Dr. Amar Mukherjee" .
 
 <https://bio.tools/ippbs-opt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0128,
@@ -258269,7 +265451,7 @@ A webserver for identifying protein-nucleic acid interfaces hotspot residues. iP
     sc:url "http://www.jci-bioinfo.cn/iPPBS-Opt" .
 
 <https://bio.tools/ippbs-pseaac> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0128,
@@ -258286,7 +265468,7 @@ A webserver for identifying protein-nucleic acid interfaces hotspot residues. iP
     sc:url "http://www.jci-bioinfo.cn/iPPBS-PseAAC" .
 
 <https://bio.tools/ippd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0154,
@@ -258305,7 +265487,7 @@ A webserver for identifying protein-nucleic acid interfaces hotspot residues. iP
     biotools:primaryContact "Martin Slawski" .
 
 <https://bio.tools/ippi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0602,
@@ -258321,7 +265503,7 @@ A webserver for identifying protein-nucleic acid interfaces hotspot residues. iP
     sc:url "http://sunflower.kuicr.kyoto-u.ac.jp/~morihiro/protint/ppi-form.html" .
 
 <https://bio.tools/ippi-db> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_3343 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btaa1091> ;
@@ -258334,7 +265516,7 @@ A webserver for identifying protein-nucleic acid interfaces hotspot residues. iP
     sc:url "https://ippidb.pasteur.fr" .
 
 <https://bio.tools/ippi-esml> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -258349,8 +265531,21 @@ A webserver for identifying protein-nucleic acid interfaces hotspot residues. iP
     sc:softwareHelp <http://www.jci-bioinfo.cn/PPIEL/PPIEL_readme.html> ;
     sc:url "http://www.jci-bioinfo.cn/iPPI-Esml" .
 
+<https://bio.tools/ipro-gan> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workbench" ;
+    sc:applicationSubCategory edam:topic_0634,
+        edam:topic_0749 ;
+    sc:citation <https://doi.org/10.1016/J.CMPB.2022.106625>,
+        "pubmed:35038653" ;
+    sc:description "A novel model based on generative adversarial learning for identifying promoters and their strength" ;
+    sc:license "Not licensed" ;
+    sc:name "iPro-GAN" ;
+    sc:operatingSystem "Linux" ;
+    sc:url "https://github.com/Bovbene/iPro-GAN" .
+
 <https://bio.tools/ipro54-pseknc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0749 ;
     sc:citation <https://doi.org/10.1093/nar/gku1019>,
@@ -258363,8 +265558,56 @@ A webserver for identifying protein-nucleic acid interfaces hotspot residues. iP
     sc:url "http://lin-group.cn/server/iPro54-PseKNC" ;
     biotools:primaryContact "Hao Lin" .
 
+<https://bio.tools/iprobiotics> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0152,
+        edam:topic_3174,
+        edam:topic_3390,
+        edam:topic_3474,
+        edam:topic_3697 ;
+    sc:citation <https://doi.org/10.1093/BIB/BBAB477>,
+        "pubmed:34849572" ;
+    sc:description "A machine learning platform for rapid identification of probiotic properties from whole-genome primary sequences." ;
+    sc:featureList edam:operation_3472,
+        edam:operation_3936,
+        edam:operation_3937 ;
+    sc:isAccessibleForFree true ;
+    sc:name "iProbiotics" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://bioinfor.imu.edu.cn/iprobiotics" .
+
+<https://bio.tools/iprom-zea> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:name "Nucleic acid sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0091,
+        edam:topic_0749,
+        edam:topic_0780,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1016/J.YGENO.2022.110384>,
+        "pubmed:35533969" ;
+    sc:description "A two-layer model to identify plant promoters and their types using convolutional neural network." ;
+    sc:featureList edam:operation_0440,
+        edam:operation_0441,
+        edam:operation_3927 ;
+    sc:isAccessibleForFree true ;
+    sc:name "iProm-Zea" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://nsclbio.jbnu.ac.kr/tools/iProm-Zea/" .
+
 <https://bio.tools/ipromoter-2l> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0654,
@@ -258382,7 +265625,7 @@ A webserver for identifying protein-nucleic acid interfaces hotspot residues. iP
     biotools:primaryContact "Bin Liu" .
 
 <https://bio.tools/ipromoter-5mc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_2640,
@@ -258404,8 +265647,53 @@ This prediction website is based on known human small cell lung cancer cell coef
     sc:name "iPromoter-5mC" ;
     sc:url "http://www.jci-bioinfo.cn/iPromoter-5mC" .
 
+<https://bio.tools/iprotgly-ss> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0601,
+        edam:topic_0749,
+        edam:topic_0821,
+        edam:topic_3334,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1007/978-1-0716-2317-6_5>,
+        "pubmed:35696077" ;
+    sc:description "A Tool to Accurately Predict Protein Glycation Site Using Structural-Based Features." ;
+    sc:featureList edam:operation_0417,
+        edam:operation_2415,
+        edam:operation_2488,
+        edam:operation_3755 ;
+    sc:isAccessibleForFree true ;
+    sc:name "iProtGly-SS" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://brl.uiu.ac.bd/iprotgly-ss/" .
+
+<https://bio.tools/iprox> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0077,
+        edam:topic_0080,
+        edam:topic_0121,
+        edam:topic_0154,
+        edam:topic_3520 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAB1081>,
+        "pmcid:PMC8728291",
+        "pubmed:34871441" ;
+    sc:description "iProX is an integrated proteome resources center in China, which is built to accelerate the worldwide data sharing in proteomics. iProX is composed of a data submission system and a proteome database." ;
+    sc:featureList edam:operation_2421,
+        edam:operation_2422,
+        edam:operation_3431,
+        edam:operation_3631 ;
+    sc:isAccessibleForFree true ;
+    sc:name "iProX" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://www.iprox.cn" .
+
 <https://bio.tools/iprstats> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_2269 ;
@@ -258421,10 +265709,10 @@ This prediction website is based on known human small cell lung cancer cell coef
 
 <https://bio.tools/ipsa> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:encodingFormat "http://edamontology.org/format_2306" ;
+            sc:name "Sequence features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0077 ;
     sc:author "Dmitri Pervouchine" ;
@@ -258442,7 +265730,7 @@ This prediction website is based on known human small cell lung cancer cell coef
     biotools:primaryContact "Dmitri Pervouchine" .
 
 <https://bio.tools/ipseu-ncp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0621,
@@ -258459,7 +265747,7 @@ Pseudouridine modification is most commonly found among various kinds of RNA mod
     sc:url "https://github.com/ngphubinh/iPseU-NCP" .
 
 <https://bio.tools/ipsi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_3068,
         edam:topic_3071 ;
@@ -258478,7 +265766,7 @@ IPSI database, "Italian Present-day Stress Indicators", is a georeferenced repos
     sc:url "http://ipsi.rm.ingv.it/" .
 
 <https://bio.tools/iptdfold> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0130,
@@ -258495,7 +265783,7 @@ IPSI database, "Italian Present-day Stress Indicators", is a georeferenced repos
     biotools:primaryContact "Gui-Jun Zhang" .
 
 <https://bio.tools/iptk> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -258519,8 +265807,59 @@ IPSI database, "Italian Present-day Stress Indicators", is a georeferenced repos
         <https://iptk.readthedocs.io/en/latest/> ;
     sc:url "https://anaconda.org/bioconda/iptkl" .
 
+<https://bio.tools/ipvp-drlf> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0780,
+        edam:topic_2229,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1016/J.CSBJ.2022.06.002>,
+        "pmcid:PMC9207291",
+        "pubmed:35765653" ;
+    sc:description "Identification of plant vacuole proteins by exploiting deep representation learning features." ;
+    sc:featureList edam:operation_2489,
+        edam:operation_3767,
+        edam:operation_3936 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "iPVP-DRLF" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://121.40.214.145:7002" .
+
+<https://bio.tools/ipylae> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workflow" ;
+    sc:applicationSubCategory edam:topic_0160,
+        edam:topic_0602,
+        edam:topic_0625,
+        edam:topic_2885,
+        edam:topic_3516 ;
+    sc:citation <https://doi.org/10.7717/PEERJ.12502>,
+        "pmcid:PMC8679960",
+        "pubmed:35003914" ;
+    sc:description "Python for local ancestry estimation" ;
+    sc:featureList edam:operation_0487,
+        edam:operation_3196,
+        edam:operation_3436,
+        edam:operation_3454,
+        edam:operation_3891 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "iPyLAE" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/smetam/pylae" .
+
 <https://bio.tools/ipyphe> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3298,
@@ -258544,7 +265883,7 @@ Python toolbox for phenotype analysis of arrayed microbial colonies.""" ;
     sc:url "https://github.com/Bahler-Lab/pyphe" .
 
 <https://bio.tools/ipyrad> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3056,
@@ -258567,7 +265906,7 @@ Welcome to ipyrad — ipyrad documentation.""" ;
     sc:url "https://github.com/dereneaton/ipyrad/" .
 
 <https://bio.tools/iq-ghost> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0194,
         edam:topic_0621,
@@ -258580,7 +265919,7 @@ Welcome to ipyrad — ipyrad documentation.""" ;
     sc:url "http://www.iqtree.org" .
 
 <https://bio.tools/iq-r> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -258598,7 +265937,7 @@ This is an R package to estimate relative protein abundances from ion quantifica
     sc:url "http://oncoproteomics.nl/iq" .
 
 <https://bio.tools/iq-tree> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0194,
         edam:topic_2269,
@@ -258614,7 +265953,7 @@ This is an R package to estimate relative protein abundances from ion quantifica
     sc:url "http://www.cibiv.at/software/iqtree/" .
 
 <https://bio.tools/iqcell> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3053,
@@ -258633,7 +265972,7 @@ This is an R package to estimate relative protein abundances from ion quantifica
     biotools:primaryContact "Peter W. Zandstra" .
 
 <https://bio.tools/iqseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3320 ;
     sc:citation <https://doi.org/10.1371/journal.pone.0029175> ;
@@ -258647,7 +265986,7 @@ This is an R package to estimate relative protein abundances from ion quantifica
     biotools:primaryContact "Gerstein Lab" .
 
 <https://bio.tools/iqtl-f2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0102,
@@ -258664,7 +266003,7 @@ This is an R package to estimate relative protein abundances from ion quantifica
     biotools:primaryContact "Yuehua Cui" .
 
 <https://bio.tools/iqtl-vc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3053 ;
@@ -258677,7 +266016,7 @@ This is an R package to estimate relative protein abundances from ion quantifica
     sc:url "http://www.stt.msu.edu/~cui/software.html" .
 
 <https://bio.tools/iqtree> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3293 ;
     sc:citation <https://doi.org/10.1093/molbev/msu300> ;
@@ -258688,7 +266027,7 @@ This is an R package to estimate relative protein abundances from ion quantifica
     sc:url "http://www.iqtree.org/" .
 
 <https://bio.tools/iquant> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3047,
@@ -258705,7 +266044,7 @@ This is an R package to estimate relative protein abundances from ion quantifica
     biotools:primaryContact "Siqi Liu" .
 
 <https://bio.tools/ir-tex> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Web service" ;
     sc:applicationSubCategory edam:topic_3170,
@@ -258729,7 +266068,7 @@ Download the latest version of R software, available at https://cran.r-project.o
     sc:url "http://www.lstmed.ac.uk/projects/IR-TEx" .
 
 <https://bio.tools/ir-visual-image-fusion> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -258744,8 +266083,31 @@ Download the latest version of R software, available at https://cran.r-project.o
     sc:url "https://www.mathworks.com/matlabcentral/fileexchange/68674-infrared-and-visual-image-fusion-method-based-on-swt_dct_sf" ;
     biotools:primaryContact "Xin Jin" .
 
+<https://bio.tools/ira> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_0883" ;
+            sc:name "Structure" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0769,
+        edam:topic_3473 ;
+    sc:citation <https://doi.org/10.1021/ACS.JCIM.1C00567>,
+        "pubmed:34704748" ;
+    sc:description "A Shape Matching Approach for Recognition and Comparison of Generic Atomic Patterns." ;
+    sc:featureList edam:operation_0387,
+        edam:operation_3432,
+        edam:operation_3456 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "IRA" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/mammasmias/IterativeRotationsAssignments" .
+
 <https://bio.tools/iranges> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3071,
@@ -258768,7 +266130,7 @@ Download the latest version of R software, available at https://cran.r-project.o
     biotools:primaryContact "BioConductor Package Maintainer" .
 
 <https://bio.tools/irbis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:author "Dmitri Pervouchine" ;
@@ -258788,7 +266150,7 @@ Download the latest version of R software, available at https://cran.r-project.o
     biotools:primaryContact "Dmitri Pervouchine" .
 
 <https://bio.tools/irc-fuse> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0154,
@@ -258805,7 +266167,7 @@ Download the latest version of R software, available at https://cran.r-project.o
     sc:url "http://kurata14.bio.kyutech.ac.jp/IRC-Fuse/" .
 
 <https://bio.tools/iread> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3308,
@@ -258824,7 +266186,7 @@ iREAD (intron REtention Analysis and Detector)is a tool to detect intron retenti
     sc:url "https://github.com/genemine/iread" .
 
 <https://bio.tools/irefindex> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0128 ;
     sc:author "Ian Donaldson" ;
@@ -258841,7 +266203,7 @@ iREAD (intron REtention Analysis and Detector)is a tool to detect intron retenti
     sc:url "http://irefindex.org/" .
 
 <https://bio.tools/irefr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0128 ;
     sc:author "Antonio Mora",
@@ -258862,14 +266224,14 @@ iREAD (intron REtention Analysis and Detector)is a tool to detect intron retenti
 
 <https://bio.tools/irefscape> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0842" ;
-            sc:name "Identifier" ;
-            sc:sameAs "http://edamontology.org/data_0842" ] ;
+            sc:additionalType "http://edamontology.org/data_0842" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Identifier" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Pathway or network" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0128 ;
     sc:author "Ian Donaldson",
@@ -258890,7 +266252,7 @@ iREAD (intron REtention Analysis and Detector)is a tool to detect intron retenti
     sc:url "http://irefindex.org/wiki/index.php?title=iRefScape" .
 
 <https://bio.tools/irefweb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -258912,8 +266274,53 @@ Identified a group of co-expressed genes, and would like to check if the protein
     sc:name "iRefWeb" ;
     sc:url "http://wodaklab.org/iRefWeb" .
 
+<https://bio.tools/iregnet> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0602,
+        edam:topic_0749,
+        edam:topic_0780,
+        edam:topic_3169,
+        edam:topic_3295 ;
+    sc:citation <https://doi.org/10.1093/PLPHYS/KIAB389>,
+        "pmcid:PMC8566287",
+        "pubmed:34618085" ;
+    sc:description "An integrative Regulatory Network analysis tool for Arabidopsis thaliana." ;
+    sc:featureList edam:operation_1781,
+        edam:operation_2437,
+        edam:operation_3196,
+        edam:operation_3222,
+        edam:operation_3925 ;
+    sc:isAccessibleForFree true ;
+    sc:name "iRegNet" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://chromatindynamics.snu.ac.kr:8082/iRegNet_main" .
+
+<https://bio.tools/irena> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0602,
+        edam:topic_0659,
+        edam:topic_0749,
+        edam:topic_3170,
+        edam:topic_3308 ;
+    sc:citation <https://doi.org/10.1101/2021.11.22.469628> ;
+    sc:description "IReNA (Integrated Regulatory Network Analysis) is an R package to perform regulatory network analysis. IReNA contains two methods to reconstruct gene regulatory networks. The first is using single-cell RNA sequencing (scRNA-seq) data alone. The second is integrating scRNA-seq data and chromatin accessibility profiles from Assay for Transposase Accessible Chromatin using sequencing (ATAC-seq). IReNA performs modular regulatory network to reveal key transcription factors and significant regulatory relationships among modules, providing biological insights on regulatory mechanisms." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_1781,
+        edam:operation_2437 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "IReNA" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/jiang-junyao/IReNA" .
+
 <https://bio.tools/iresbase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0621,
@@ -258934,14 +266341,13 @@ A Comprehensive Database of Experimentally Verified Internal Ribosome Entry Site
 
 <https://bio.tools/iresite> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ] ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:encodingFormat "http://edamontology.org/format_2200" ;
+            sc:name "Nucleic acid sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2084" ;
-            sc:name "Nucleic acid report" ;
-            sc:sameAs "http://edamontology.org/data_2084" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2084" ;
+            sc:name "Nucleic acid report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0160,
@@ -258962,7 +266368,7 @@ A Comprehensive Database of Experimentally Verified Internal Ribosome Entry Site
     biotools:primaryContact "Martin Pospisek" .
 
 <https://bio.tools/irespred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0621,
@@ -258978,8 +266384,26 @@ A Comprehensive Database of Experimentally Verified Internal Ribosome Entry Site
     sc:softwareHelp <http://196.1.114.46:1800/IRESPred/about.html> ;
     sc:url "http://bioinfo.net.in/IRESPred/" .
 
+<https://bio.tools/irex> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0749,
+        edam:topic_3299,
+        edam:topic_3379 ;
+    sc:citation <https://doi.org/10.1017/CTS.2022.376>,
+        "pmcid:PMC9066316",
+        "pubmed:35574155" ;
+    sc:description "A national web-based platform for operationalizing single IRB review." ;
+    sc:featureList edam:operation_3755 ;
+    sc:isAccessibleForFree true ;
+    sc:name "IREx" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://IRBExchange.org" .
+
 <https://bio.tools/irfcellsegmentation> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0611,
         edam:topic_2229,
@@ -258999,8 +266423,32 @@ A Comprehensive Database of Experimentally Verified Internal Ribosome Entry Site
     biotools:primaryContact <https://orcid.org/0000-0001-9794-5649>,
         "Lucy Collinson" .
 
+<https://bio.tools/irfinder-s> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_3170,
+        edam:topic_3320,
+        edam:topic_3474,
+        edam:topic_3512,
+        edam:topic_3519 ;
+    sc:citation <https://doi.org/10.1186/S13059-021-02515-8>,
+        "pmcid:PMC8573998",
+        "pubmed:34749764" ;
+    sc:description "A comprehensive suite to discover and explore intron retention." ;
+    sc:featureList edam:operation_0264,
+        edam:operation_0337,
+        edam:operation_3799 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "IRFinder-S" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://github.com/RitchieLabIGH/IRFinder/wiki> ;
+    sc:url "https://github.com/RitchieLabIGH/IRFinder" .
+
 <https://bio.tools/irg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0749,
@@ -259022,7 +266470,7 @@ A Comprehensive Database of Experimentally Verified Internal Ribosome Entry Site
     biotools:primaryContact "Amy Marshall-Colon" .
 
 <https://bio.tools/irgo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Ontology" ;
     sc:applicationSubCategory edam:topic_0089,
@@ -259042,7 +266490,7 @@ A Comprehensive Database of Experimentally Verified Internal Ribosome Entry Site
     sc:url "http://ir-go.net/" .
 
 <https://bio.tools/irgvalid> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2640,
@@ -259064,8 +266512,54 @@ A Comprehensive Database of Experimentally Verified Internal Ribosome Entry Site
         "Windows" ;
     sc:url "https://wlake.shinyapps.io/iRGvalid/" .
 
+<https://bio.tools/irice-ms> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0080,
+        edam:topic_0121,
+        edam:topic_0601,
+        edam:topic_0780 ;
+    sc:citation <https://doi.org/10.1093/BIB/BBAB486>,
+        "pubmed:34864888" ;
+    sc:description "An integrated XGBoost model for detecting multitype post-translational modification sites in rice." ;
+    sc:featureList edam:operation_0417,
+        edam:operation_3647,
+        edam:operation_3755 ;
+    sc:isAccessibleForFree true ;
+    sc:name "iRice-MS" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://lin-group.cn/server/iRice-MS" .
+
+<https://bio.tools/irimage> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Plug-in" ;
+    sc:applicationSubCategory edam:topic_0780,
+        edam:topic_3068,
+        edam:topic_3382 ;
+    sc:citation <https://doi.org/10.7717/PEERJ-CS.977>,
+        "pmcid:PMC9138121",
+        "pubmed:35634096" ;
+    sc:description "Open source software for processing images from infrared thermal cameras." ;
+    sc:featureList edam:operation_0460,
+        edam:operation_3435,
+        edam:operation_3443 ;
+    sc:isAccessibleForFree true ;
+    sc:license "AGPL-3.0" ;
+    sc:name "IRimage" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://github.com/gpereyrairujo/IRimage/blob/main/CODE_OF_CONDUCT.md> ;
+    sc:url "https://github.com/gpereyrairujo/IRimage" .
+
 <https://bio.tools/iris> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3301,
@@ -259082,7 +266576,7 @@ A Comprehensive Database of Experimentally Verified Internal Ribosome Entry Site
     biotools:primaryContact "George Kritikos" .
 
 <https://bio.tools/iris-fgm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -259102,7 +266596,7 @@ Single-cell RNA-Seq data is useful in discovering cell heterogeneity and signatu
     sc:url "https://github.com/OSU-BMBL/IRIS-FGM" .
 
 <https://bio.tools/iris-py> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3170,
@@ -259121,7 +266615,7 @@ See 'README.1.pyIRIS.md' for detail.""" ;
     sc:url "https://github.com/th00516/ISS_pyIRIS" .
 
 <https://bio.tools/iris3> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0203,
@@ -259146,7 +266640,7 @@ integrated cell type specific Regulon inference from single-cell rna seq.""" ;
     sc:url "https://bmbl.bmi.osumc.edu/iris3/" .
 
 <https://bio.tools/irisspatialfeatures> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3474 ;
@@ -259163,7 +266657,7 @@ integrated cell type specific Regulon inference from single-cell rna seq.""" ;
     biotools:primaryContact "Daniel Gusenleitner" .
 
 <https://bio.tools/irma> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0154 ;
@@ -259180,7 +266674,7 @@ integrated cell type specific Regulon inference from single-cell rna seq.""" ;
     sc:url "http://biodev.extra.cea.fr/docs/irma/doku.php" .
 
 <https://bio.tools/irna-m6a> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0099,
@@ -259206,7 +266700,7 @@ Choose Species: Human Mouse Rat and Tissues: Brain Liver Kidney.""" ;
     sc:url "http://lin-group.cn/server/iRNA-m6A" .
 
 <https://bio.tools/irna-methyl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0099,
@@ -259223,7 +266717,7 @@ Choose Species: Human Mouse Rat and Tissues: Brain Liver Kidney.""" ;
     biotools:primaryContact "Hao Lin" .
 
 <https://bio.tools/irna5hmc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_3308,
@@ -259238,7 +266732,7 @@ A generic webserver for predicting RNA 5hmC sites.""" ;
     sc:url "http://server.malab.cn/iRNA5hmC" .
 
 <https://bio.tools/irna5hmc-ps> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0099,
@@ -259259,7 +266753,7 @@ Authors: Sajid Ahmed†, Zahid Hossain†, Mahtab Uddin, Ghazaleh Taherzadeh, Al
     sc:url "https://github.com/zahid6454/iRNA5hmC-PS" .
 
 <https://bio.tools/iro-3wpseknc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3127,
@@ -259276,7 +266770,7 @@ Authors: Sajid Ahmed†, Zahid Hossain†, Mahtab Uddin, Ghazaleh Taherzadeh, Al
     biotools:primaryContact "Bin Liu" .
 
 <https://bio.tools/iroar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0632,
         edam:topic_3168,
@@ -259293,7 +266787,7 @@ Authors: Sajid Ahmed†, Zahid Hossain†, Mahtab Uddin, Ghazaleh Taherzadeh, Al
         "Ilgar Mamedov" .
 
 <https://bio.tools/irootlab> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3307,
         edam:topic_3365,
@@ -259310,7 +266804,7 @@ Authors: Sajid Ahmed†, Zahid Hossain†, Mahtab Uddin, Ghazaleh Taherzadeh, Al
     biotools:primaryContact "Júlio Trevisan" .
 
 <https://bio.tools/irprofiler> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0820,
@@ -259330,7 +266824,7 @@ Authors: Sajid Ahmed†, Zahid Hossain†, Mahtab Uddin, Ghazaleh Taherzadeh, Al
     biotools:primaryContact "Christos Maramis" .
 
 <https://bio.tools/irscope> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -259349,7 +266843,7 @@ Authors: Sajid Ahmed†, Zahid Hossain†, Mahtab Uddin, Ghazaleh Taherzadeh, Al
     biotools:primaryContact "Ali Amiryousefi" .
 
 <https://bio.tools/irspot-psednc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3127,
@@ -259368,7 +266862,7 @@ Authors: Sajid Ahmed†, Zahid Hossain†, Mahtab Uddin, Ghazaleh Taherzadeh, Al
     biotools:primaryContact "Hao Lin" .
 
 <https://bio.tools/irspot-tncpseaac> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0654,
@@ -259388,7 +266882,7 @@ Authors: Sajid Ahmed†, Zahid Hossain†, Mahtab Uddin, Ghazaleh Taherzadeh, Al
     biotools:primaryContact "Support" .
 
 <https://bio.tools/irsvpred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0780,
         edam:topic_3382,
@@ -259410,8 +266904,24 @@ Primary Basmati Quality Characteristics.""" ;
     sc:name "iRSVPred" ;
     sc:url "http://14.139.62.220/rice/" .
 
+<https://bio.tools/irtbemm> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:citation <https://doi.org/10.1177/0146621620932654>,
+        "pmcid:PMC7495790",
+        "pubmed:34565936" ;
+    sc:description "An R Package for Estimating IRT Models With Guessing or Slipping Parameters." ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "IRTBEMM" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://cran.r-project.org/web/packages/IRTBEMM/IRTBEMM.pdf> ;
+    sc:url "http://cran.r-project.org/package=IRTBEMM" .
+
 <https://bio.tools/isa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3053,
@@ -259427,7 +266937,7 @@ Primary Basmati Quality Characteristics.""" ;
     sc:url "http://www2.unil.ch/cbg/index.php?title=ISA" .
 
 <https://bio.tools/isa4j> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_3382,
@@ -259444,7 +266954,7 @@ This is an XML namespace defined in the XML Linking Language (XLink) specificati
     sc:url "https://mvnrepository.com/artifact/de.ipk-gatersleben/isa4j" .
 
 <https://bio.tools/isa_api> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3382,
@@ -259462,7 +266972,7 @@ The ISA API aims to provide you, the developer, with a set of tools to help you
     sc:url "http://github.com/ISA-tools/isa-api/" .
 
 <https://bio.tools/isa_tools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0219,
         edam:topic_3071 ;
@@ -259478,7 +266988,7 @@ The ISA API aims to provide you, the developer, with a set of tools to help you
     sc:url "http://isa-tools.org/" .
 
 <https://bio.tools/isaac> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0622 ;
@@ -259492,8 +267002,28 @@ The ISA API aims to provide you, the developer, with a set of tools to help you
     sc:url "https://github.com/sequencing" ;
     biotools:primaryContact "ISAAC support" .
 
+<https://bio.tools/isac> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Desktop application" ;
+    sc:applicationSubCategory edam:topic_0611,
+        edam:topic_0769,
+        edam:topic_3520 ;
+    sc:citation <https://doi.org/10.3389/FMOLB.2022.919994>,
+        "pmcid:PMC9296836",
+        "pubmed:35874605" ;
+    sc:description "Accelerated 2D Classification With ISAC Using GPUs." ;
+    sc:featureList edam:operation_3432,
+        edam:operation_3458 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "ISAC" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://gitlab.gwdg.de/mpi-dortmund/sphire/cuISAC/" .
+
 <https://bio.tools/isacgh> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -259513,14 +267043,14 @@ The ISA API aims to provide you, the developer, with a set of tools to help you
 
 <https://bio.tools/isafe> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2082" ;
-            sc:name "Matrix" ;
-            sc:sameAs "http://edamontology.org/data_2082" ] ;
+            sc:additionalType "http://edamontology.org/data_2082" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Matrix" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2082" ;
-            sc:name "Matrix" ;
-            sc:sameAs "http://edamontology.org/data_2082" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2082" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Matrix" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3299,
         edam:topic_3473,
@@ -259540,7 +267070,7 @@ The ISA API aims to provide you, the developer, with a set of tools to help you
     biotools:primaryContact "Ali Akbari" .
 
 <https://bio.tools/isambard> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0130,
         edam:topic_2258,
@@ -259558,7 +267088,7 @@ The ISA API aims to provide you, the developer, with a set of tools to help you
         "D.N. Woolfson" .
 
 <https://bio.tools/isarst> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0081,
@@ -259579,7 +267109,7 @@ The ISA API aims to provide you, the developer, with a set of tools to help you
     biotools:primaryContact "Ping-Chiang Lyu" .
 
 <https://bio.tools/isas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0622 ;
@@ -259594,7 +267124,7 @@ The ISA API aims to provide you, the developer, with a set of tools to help you
     sc:url "http://www.imagenix.com/genomics/index.html" .
 
 <https://bio.tools/iscan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0622 ;
     sc:description "A package to identify insertion sequences and similar transposable elements, their inverted repeats, and the direct target repeats they generate in entire genomes." ;
@@ -259606,7 +267136,7 @@ The ISA API aims to provide you, the developer, with a set of tools to help you
     biotools:primaryContact "ExPASy helpdesk" .
 
 <https://bio.tools/iscdnase-seq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3168,
@@ -259625,7 +267155,7 @@ The ISA API aims to provide you, the developer, with a set of tools to help you
         "Bing Ni" .
 
 <https://bio.tools/iscgps> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0769,
@@ -259654,7 +267184,7 @@ The ISA API aims to provide you, the developer, with a set of tools to help you
     sc:url "https://github.com/IMB-Computational-Genomics-Lab/scGPS" .
 
 <https://bio.tools/ischip> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0632,
         edam:topic_0749,
@@ -259677,7 +267207,7 @@ The modelling of the chromatin immunoprecipitaion followed by next generation se
     sc:url "https://github.com/fnaumenko/isChIP" .
 
 <https://bio.tools/iscompare> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0199,
@@ -259698,7 +267228,7 @@ Bacterial genomes are composed by a core and an accessory genome.""" ;
     sc:url "https://github.com/maurijlozano/ISCompare" .
 
 <https://bio.tools/isdtool> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0804,
         edam:topic_2830,
@@ -259714,7 +267244,7 @@ Bacterial genomes are composed by a core and an accessory genome.""" ;
     biotools:primaryContact "JunLiu" .
 
 <https://bio.tools/isee> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3308 ;
@@ -259736,7 +267266,7 @@ Bacterial genomes are composed by a core and an accessory genome.""" ;
     biotools:primaryContact <https://orcid.org/0000-0003-3252-7758> .
 
 <https://bio.tools/iseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3168,
@@ -259755,7 +267285,7 @@ Bacterial genomes are composed by a core and an accessory genome.""" ;
     biotools:primaryContact "Qianxing Mo" .
 
 <https://bio.tools/isescan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0199,
@@ -259772,7 +267302,7 @@ Bacterial genomes are composed by a core and an accessory genome.""" ;
     biotools:primaryContact "Zhiqun Xie" .
 
 <https://bio.tools/isfinder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0621,
@@ -259793,7 +267323,7 @@ Bacterial genomes are composed by a core and an accessory genome.""" ;
     biotools:primaryContact "Patricia Siguier" .
 
 <https://bio.tools/isfrag> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0602,
@@ -259815,8 +267345,27 @@ Bacterial genomes are composed by a core and an accessory genome.""" ;
         "Windows" ;
     sc:url "https://github.com/HuanLab/ISFrag" .
 
+<https://bio.tools/isfun> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0091 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC281>,
+        "pubmed:35441661" ;
+    sc:description "An R package for integrative dimension reduction analysis." ;
+    sc:featureList edam:operation_3891,
+        edam:operation_3935,
+        edam:operation_3960 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-2.0" ;
+    sc:name "iSFun" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://cran.r-project.org/web/packages/iSFun/iSFun.pdf> ;
+    sc:url "https://CRAN.R-project.org/package=iSFun" .
+
 <https://bio.tools/isgp-drlf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0140,
@@ -259836,8 +267385,77 @@ if computing on a GPU, it would be fasster.""" ;
     sc:name "isGP-DRLF" ;
     sc:url "http://isGP-DRLF.aibiochem.net" .
 
+<https://bio.tools/isgpre> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:applicationSubCategory edam:topic_0623,
+        edam:topic_3474 ;
+    sc:description "Tools for predicting interferon stimulated human genes" ;
+    sc:license "GPL-3.0" ;
+    sc:name "ISGPRE" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://github.com/HChai01/ISGPRE> ;
+    sc:softwareVersion "1.0" ;
+    sc:url "http://isgpre.cvr.gla.ac.uk/" .
+
+<https://bio.tools/iskylims> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_3914" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Quality control report" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2337" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Resource metadata" ] ;
+    bsc:output [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Report" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web API",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0607,
+        edam:topic_3489 ;
+    sc:author <https://orcid.org/0000-0002-0740-6324>,
+        "Luis Chapado" ;
+    sc:description "Open-source LIMS (laboratory Information Management System) for Next Generation Sequencing sample management, statistics and reports, and bioinformatics analysis service management." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_2409,
+        edam:operation_3218 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "iSkyLIMS" ;
+    sc:operatingSystem "Linux" ;
+    sc:softwareHelp <https://iskylims.readthedocs.io/en/latest/> ;
+    sc:softwareVersion "2.2.1" ;
+    sc:url "https://github.com/BU-ISCIII/iSkyLIMS" .
+
+<https://bio.tools/islandcompare> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0084,
+        edam:topic_0797,
+        edam:topic_3174 ;
+    sc:citation <https://doi.org/10.1099/MGEN.0.000818>,
+        "pubmed:35584003" ;
+    sc:description "Enabling genomic island prediction and comparison in multiple genomes to investigate bacterial evolution and outbreaks." ;
+    sc:featureList edam:operation_0567,
+        edam:operation_3432,
+        edam:operation_3482 ;
+    sc:isAccessibleForFree true ;
+    sc:name "IslandCompare" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://islandcompare.ca" .
+
 <https://bio.tools/islandpath> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0114,
         edam:topic_0621,
@@ -259857,7 +267475,7 @@ if computing on a GPU, it would be fasster.""" ;
     sc:url "http://www.pathogenomics.sfu.ca/islandpath/" .
 
 <https://bio.tools/islandviewer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0622,
@@ -259880,7 +267498,7 @@ if computing on a GPU, it would be fasster.""" ;
     biotools:primaryContact "Fiona S. L. Brinkman" .
 
 <https://bio.tools/ism> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0199,
@@ -259901,7 +267519,7 @@ Web site created using create-react-app.""" ;
     sc:url "https://covid19-ism.coe.drexel.edu/" .
 
 <https://bio.tools/isma> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0166 ;
@@ -259917,7 +267535,7 @@ Web site created using create-react-app.""" ;
     biotools:primaryContact "Sofie Demeyer" .
 
 <https://bio.tools/ismags> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0166,
         edam:topic_2259 ;
@@ -259940,22 +267558,21 @@ Cytoscape App for the ISMAGS motif detection algorithm.""" ;
 
 <https://bio.tools/ismara> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3110" ;
-            sc:name "Raw microarray data" ;
-            sc:sameAs "http://edamontology.org/data_3110" ],
+            sc:additionalType "http://edamontology.org/data_3108" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
+            sc:name "Experimental measurement" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3108" ;
-            sc:name "Experimental measurement" ;
-            sc:sameAs "http://edamontology.org/data_3108" ],
+            sc:additionalType "http://edamontology.org/data_3110" ;
+            sc:encodingFormat "http://edamontology.org/format_2056" ;
+            sc:name "Raw microarray data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3108" ;
-            sc:name "Experimental measurement" ;
-            sc:sameAs "http://edamontology.org/data_3108" ] ;
+            sc:additionalType "http://edamontology.org/data_3108" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
+            sc:name "Experimental measurement" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0085,
@@ -259980,10 +267597,10 @@ Cytoscape App for the ISMAGS motif detection algorithm.""" ;
 
 <https://bio.tools/ismara_client> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_1638" ;
+            sc:name "Expression data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3169,
         edam:topic_3518 ;
@@ -260002,7 +267619,7 @@ Cytoscape App for the ISMAGS motif detection algorithm.""" ;
     biotools:primaryContact "Mikhail Pachkov" .
 
 <https://bio.tools/ismp-grey> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078 ;
     sc:citation <https://doi.org/10.1371/journal.pone.0049040> ;
@@ -260016,7 +267633,7 @@ Cytoscape App for the ISMAGS motif detection algorithm.""" ;
     sc:url "http://www.jci-bioinfo.cn/iSMP-Grey" .
 
 <https://bio.tools/isno-aapair> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078 ;
     sc:citation <https://doi.org/10.7717/peerj.171>,
@@ -260033,7 +267650,7 @@ Cytoscape App for the ISMAGS motif detection algorithm.""" ;
     sc:url "http://app.aporc.org/iSNO-AAPair/" .
 
 <https://bio.tools/isno-pseaac> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0154 ;
@@ -260048,7 +267665,7 @@ Cytoscape App for the ISMAGS motif detection algorithm.""" ;
     sc:url "http://app.aporc.org/iSNO-PseAAC/" .
 
 <https://bio.tools/isnpranker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0203,
@@ -260060,7 +267677,7 @@ Cytoscape App for the ISMAGS motif detection algorithm.""" ;
     sc:url "http://isnpranker.semilab.ir/" .
 
 <https://bio.tools/iso2flux> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3292 ;
     sc:citation <https://doi.org/10.1101/213603> ;
@@ -260076,22 +267693,22 @@ Cytoscape App for the ISMAGS motif detection algorithm.""" ;
 
 <https://bio.tools/iso2l> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1857" ;
-            sc:name "Atomic occupancy" ;
-            sc:sameAs "http://edamontology.org/data_1857" ],
+            sc:additionalType "http://edamontology.org/data_1857" ;
+            sc:encodingFormat "http://edamontology.org/format_2035" ;
+            sc:name "Atomic occupancy" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_2571" ;
+            sc:name "Protein sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ],
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3603" ;
+            sc:name "Plot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_2269,
@@ -260107,18 +267724,18 @@ Cytoscape App for the ISMAGS motif detection algorithm.""" ;
 
 <https://bio.tools/isobar> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0944" ;
-            sc:name "Peptide mass fingerprint" ;
-            sc:sameAs "http://edamontology.org/data_0944" ],
+            sc:additionalType "http://edamontology.org/data_0944" ;
+            sc:encodingFormat "http://edamontology.org/format_3651" ;
+            sc:name "Peptide mass fingerprint" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ] ;
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Peptide identification" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_3468" ;
+            sc:name "Expression data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -260147,8 +267764,29 @@ Cytoscape App for the ISMAGS motif detection algorithm.""" ;
     sc:url "http://bioconductor.org/packages/release/bioc/html/isobar.html" ;
     biotools:primaryContact <http://orcid.org/0000-0001-6192-0853> .
 
+<https://bio.tools/isobaricquant> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0121,
+        edam:topic_0154,
+        edam:topic_3520 ;
+    sc:citation <https://doi.org/10.1002/PMIC.202100253>,
+        "pubmed:35776068" ;
+    sc:description "IsobaricQuant enables cross-platform quantification, visualization, and filtering of isobarically-labeled peptides." ;
+    sc:featureList edam:operation_3639,
+        edam:operation_3695,
+        edam:operation_3767 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "IsobaricQuant" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://isobaricquant.readthedocs.io/en/latest/> ;
+    sc:url "https://github.com/Villen-Lab/isobaricquant" .
+
 <https://bio.tools/isobase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0128,
@@ -260167,7 +267805,7 @@ Cytoscape App for the ISMAGS motif detection algorithm.""" ;
     biotools:primaryContact "IsoBase Support" .
 
 <https://bio.tools/isoblat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0196 ;
     sc:description "Use transcripts to assess a de novo assembly." ;
@@ -260184,14 +267822,12 @@ Cytoscape App for the ISMAGS motif detection algorithm.""" ;
 
 <https://bio.tools/isochore> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2887" ;
-            sc:name "Nucleic acid sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2887" ] ;
+            sc:additionalType "http://edamontology.org/data_2887" ;
+            sc:name "Nucleic acid sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1276" ;
-            sc:name "Nucleic acid features" ;
-            sc:sameAs "http://edamontology.org/data_1276" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1276" ;
+            sc:name "Nucleic acid features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0157 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -260222,23 +267858,22 @@ Cytoscape App for the ISMAGS motif detection algorithm.""" ;
 
 <https://bio.tools/isochore-ebi> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ] ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:name "Nucleic acid sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1276" ;
-            sc:name "Nucleic acid features" ;
-            sc:sameAs "http://edamontology.org/data_1276" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1276" ;
+            sc:name "Nucleic acid features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0157,
         edam:topic_3512 ;
     sc:author "EMBOSS",
-        "Web Production" ;
-    sc:citation <https://doi.org/10.1093/nar/gkv1352> ;
+        "Job Dispatcher" ;
+    sc:citation <https://doi.org/10.1093/nar/gkac240>,
+        <https://doi.org/10.1093/nar/gkv1352> ;
     sc:description "Plot potential isochore features." ;
     sc:featureList edam:operation_0430 ;
-    sc:name "isochore (EBI)" ;
+    sc:name "Isochore (EBI)" ;
     sc:operatingSystem "Linux",
         "Mac",
         "Windows" ;
@@ -260247,10 +267882,10 @@ Cytoscape App for the ISMAGS motif detection algorithm.""" ;
         <http://www.ebi.ac.uk/about/terms-of-use> ;
     sc:softwareVersion "1" ;
     sc:url "http://www.ebi.ac.uk/Tools/seqstats/emboss_isochore/" ;
-    biotools:primaryContact "Web Production" .
+    biotools:primaryContact "Job Dispatcher Team" .
 
 <https://bio.tools/isocket> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_2814,
@@ -260267,8 +267902,31 @@ Cytoscape App for the ISMAGS motif detection algorithm.""" ;
     biotools:primaryContact "Derek N Woolfson",
         "Jack W Heal" .
 
+<https://bio.tools/isocnv> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0622,
+        edam:topic_0632,
+        edam:topic_2885,
+        edam:topic_3676,
+        edam:topic_3958 ;
+    sc:citation <https://doi.org/10.1186/S12859-021-04452-6>,
+        "pmcid:PMC8555218",
+        "pubmed:34715772" ;
+    sc:description "In silico optimization of copy number variant detection from targeted or exome sequencing data." ;
+    sc:featureList edam:operation_3196,
+        edam:operation_3227,
+        edam:operation_3961 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "isoCNV" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://gitlab.com/sequentiateampublic/isocnv" .
+
 <https://bio.tools/isoda> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0634,
@@ -260288,7 +267946,7 @@ Cytoscape App for the ISMAGS motif detection algorithm.""" ;
         "Maozu Guo" .
 
 <https://bio.tools/isoem> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3320 ;
     sc:citation "pubmed:21504602" ;
@@ -260306,7 +267964,7 @@ Cytoscape App for the ISMAGS motif detection algorithm.""" ;
         "Sahar Al Seesi" .
 
 <https://bio.tools/isoem2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0203,
@@ -260322,7 +267980,7 @@ Cytoscape App for the ISMAGS motif detection algorithm.""" ;
         "Ion I. Măndoiu" .
 
 <https://bio.tools/isoexpresso> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2640,
@@ -260343,7 +268001,7 @@ Cytoscape App for the ISMAGS motif detection algorithm.""" ;
         "Sangwoo Kim" .
 
 <https://bio.tools/isofinder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0199,
@@ -260363,7 +268021,7 @@ Cytoscape App for the ISMAGS motif detection algorithm.""" ;
     biotools:primaryContact "J. L. Oliver" .
 
 <https://bio.tools/isoformresolver> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121 ;
     sc:citation <https://doi.org/10.1021/pr200039p> ;
@@ -260374,7 +268032,7 @@ Cytoscape App for the ISMAGS motif detection algorithm.""" ;
     biotools:primaryContact "Natalie Ahn" .
 
 <https://bio.tools/isoformswitchanalyzer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3307,
         edam:topic_3512 ;
@@ -260395,7 +268053,7 @@ Cytoscape App for the ISMAGS motif detection algorithm.""" ;
         "Kristoffer Vitting-Seerup" .
 
 <https://bio.tools/isogenegui> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -260415,7 +268073,7 @@ Cytoscape App for the ISMAGS motif detection algorithm.""" ;
     biotools:primaryContact "Setia Pramana" .
 
 <https://bio.tools/isoglyp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0601,
@@ -260435,7 +268093,7 @@ Isoform Specific O-Glycosylation Prediction (ISOGlyP).""" ;
     sc:url "http://ISOGlyP.utep.edu" .
 
 <https://bio.tools/isogo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_2640,
@@ -260456,7 +268114,7 @@ The advent of RNA-seq technologies has switched the paradigm of genetic analysis
     sc:url "https://biotecnun.unav.es/app/isogo" .
 
 <https://bio.tools/isolasso> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0203,
@@ -260471,7 +268129,7 @@ The advent of RNA-seq technologies has switched the paradigm of genetic analysis
     sc:url "http://alumni.cs.ucr.edu/~liw/isolasso.html" .
 
 <https://bio.tools/isolde> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3053,
@@ -260491,7 +268149,7 @@ The advent of RNA-seq technologies has switched the paradigm of genetic analysis
     biotools:primaryContact "Christelle Reynès" .
 
 <https://bio.tools/isom-gsn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2640,
@@ -260510,7 +268168,7 @@ To replicate the algorithm use the following steps:.""" ;
     sc:url "https://github.com/NaziaFatima/iSOM_GSN" .
 
 <https://bio.tools/isomir> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_0780,
@@ -260530,7 +268188,7 @@ The IsomiR Window project is a user-friendly tool that enables biologists to per
     sc:url "https://isomir.fc.ul.pt/" .
 
 <https://bio.tools/isomir-sea> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0659,
@@ -260548,7 +268206,7 @@ The IsomiR Window project is a user-friendly tool that enables biologists to per
     biotools:primaryContact "Gianvito Urgese" .
 
 <https://bio.tools/isomirmap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0659,
@@ -260572,7 +268230,7 @@ isoMiRmap is a miRNA and isomiRs mining tool that let's you quickly, exhaustivel
     sc:url "https://cm.jefferson.edu/isoMiRmap/" .
 
 <https://bio.tools/isomirs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0099,
@@ -260593,7 +268251,7 @@ isoMiRmap is a miRNA and isomiRs mining tool that let's you quickly, exhaustivel
     biotools:primaryContact "Lorena Pantano" .
 
 <https://bio.tools/isonet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0611,
         edam:topic_0749,
@@ -260611,26 +268269,8 @@ isoMiRmap is a miRNA and isomiRs mining tool that let's you quickly, exhaustivel
         "Windows" ;
     sc:url "https://github.com/Heng-Z/IsoNet" .
 
-<https://bio.tools/isoprene-derived_SOA_ISOPOOH-derived_SOA> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0203,
-        edam:topic_2840,
-        edam:topic_3305,
-        edam:topic_3314,
-        edam:topic_3360 ;
-    sc:citation "pubmed:31872748" ;
-    sc:description """Understanding the Early Biological Effects of Isoprene-Derived Particulate Matter Enhanced by Anthropogenic Pollutants.
-
-INTRODUCTION:Airborne fine particulate matter (PM2.5; particulate matter ≤ 2.5 μm in aerodynamic diameter) plays a key role in air quality, climate, and public health. Globally, the largest mass fraction of PM2.5 is organic, dominated by secondary organic aerosol (SOA) formed from atmospheric oxidation of volatile organic compounds (VOCs). Isoprene from vegetation is the most abundant nonmethane VOC emitted into Earth's atmosphere.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'precursors isoprene-derived SOA ISOPOOH-derived SOA', 'isoprene-derived SOA MAE- ISOPOOH-derived SOA', 'isoprene-derived SOA ISOPOOH-derived SOA alters', 'isoprene-derived SOA'""" ;
-    sc:featureList edam:operation_2495 ;
-    sc:name "isoprene-derived SOA ISOPOOH-derived SOA" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31872748" .
-
 <https://bio.tools/isoresolve> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0085,
         edam:topic_0114,
@@ -260649,14 +268289,14 @@ IsoResolve is a computational approach for isoform function prediction by levera
 
 <https://bio.tools/isoscale> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0857" ;
-            sc:name "Sequence search results" ;
-            sc:sameAs "http://edamontology.org/data_0857" ] ;
+            sc:additionalType "http://edamontology.org/data_0857" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Sequence search results" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2907" ;
-            sc:name "Protein accession" ;
-            sc:sameAs "http://edamontology.org/data_2907" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2907" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Protein accession" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0154,
@@ -260680,7 +268320,7 @@ IsoResolve is a computational approach for isoform function prediction by levera
     biotools:primaryContact "Simone Sidoli" .
 
 <https://bio.tools/isoscm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0634,
@@ -260697,7 +268337,7 @@ IsoResolve is a computational approach for isoform function prediction by levera
     sc:url "https://github.com/shenkers/isoscm" .
 
 <https://bio.tools/isoseq3> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application",
         "Workflow" ;
@@ -260719,7 +268359,7 @@ IsoResolve is a computational approach for isoform function prediction by levera
     biotools:primaryContact "Pacific Biosciences" .
 
 <https://bio.tools/isosolve> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0593,
@@ -260738,7 +268378,7 @@ IsoResolve is a computational approach for isoform function prediction by levera
         "Sergueï Sokol" .
 
 <https://bio.tools/isosplitter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0780,
@@ -260758,7 +268398,7 @@ IsoResolve is a computational approach for isoform function prediction by levera
     biotools:primaryContact "Hengfu Yin" .
 
 <https://bio.tools/isotools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0114,
         edam:topic_3170,
@@ -260781,14 +268421,14 @@ IsoResolve is a computational approach for isoform function prediction by levera
 
 <https://bio.tools/isotop> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0846" ;
-            sc:name "Chemical formula" ;
-            sc:sameAs "http://edamontology.org/data_0846" ] ;
+            sc:additionalType "http://edamontology.org/data_0846" ;
+            sc:encodingFormat "http://edamontology.org/format_2035" ;
+            sc:name "Chemical formula" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3603" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -260805,14 +268445,14 @@ IsoResolve is a computational approach for isoform function prediction by levera
 
 <https://bio.tools/isotop_fs> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0846" ;
-            sc:name "Chemical formula" ;
-            sc:sameAs "http://edamontology.org/data_0846" ] ;
+            sc:additionalType "http://edamontology.org/data_0846" ;
+            sc:encodingFormat "http://edamontology.org/format_2035" ;
+            sc:name "Chemical formula" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3603" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -260825,7 +268465,7 @@ IsoResolve is a computational approach for isoform function prediction by levera
     sc:url "http://www.ms-utils.org/isotop_fs.html" .
 
 <https://bio.tools/isotope> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3170,
@@ -260851,14 +268491,14 @@ For the obtention of exonizations, neoskipping and A5_A3 events, the first input
 
 <https://bio.tools/isotope_calculator> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0846" ;
-            sc:name "Chemical formula" ;
-            sc:sameAs "http://edamontology.org/data_0846" ] ;
+            sc:additionalType "http://edamontology.org/data_0846" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Chemical formula" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -260875,7 +268515,7 @@ For the obtention of exonizations, neoskipping and A5_A3 events, the first input
     sc:url "http://www.kombyonyx.com/isotopes/" .
 
 <https://bio.tools/isotopica> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0121,
@@ -260898,7 +268538,7 @@ For the obtention of exonizations, neoskipping and A5_A3 events, the first input
     biotools:primaryContact "Fernandez-de-Cossio J." .
 
 <https://bio.tools/isotopident> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0622,
@@ -260914,7 +268554,7 @@ For the obtention of exonizations, neoskipping and A5_A3 events, the first input
     biotools:primaryContact "Erick Antezana" .
 
 <https://bio.tools/isotracer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0602,
@@ -260938,7 +268578,7 @@ For the obtention of exonizations, neoskipping and A5_A3 events, the first input
     sc:url "https://matthieu-bruneaux.gitlab.io/isotracer/" .
 
 <https://bio.tools/isotv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0108,
@@ -260960,7 +268600,7 @@ IsoTV is Snakemake pipeline to analyze and visualize functional features of tran
     sc:url "https://github.molgen.mpg.de/MayerGroup/IsoTV" .
 
 <https://bio.tools/isown> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_2640,
@@ -260978,8 +268618,30 @@ IsoTV is Snakemake pipeline to analyze and visualize functional features of tran
     sc:url "https://github.com/ikalatskaya/ISOWN" ;
     biotools:primaryContact "Irina Kalatskaya" .
 
+<https://bio.tools/ispace-log> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0204,
+        edam:topic_0602,
+        edam:topic_3170 ;
+    sc:citation <https://doi.org/10.12688/F1000RESEARCH.26128.2>,
+        "pmcid:PMC8756298",
+        "pubmed:35083040" ;
+    sc:description "A approach to inferring gene-gene net-works using SPACE model with log penalty." ;
+    sc:featureList edam:operation_2436,
+        edam:operation_2437,
+        edam:operation_3196,
+        edam:operation_3659 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "ispace-log" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/wuqian77/SpaceLog" .
+
 <https://bio.tools/ispectron> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0176,
         edam:topic_0593,
@@ -260997,7 +268659,7 @@ We introduce iSPECTRON, a program that parses data from common quantum chemistry
     sc:url "https://github.com/ispectrongit/iSPECTRON/" .
 
 <https://bio.tools/ispider_central> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0121,
@@ -261012,8 +268674,33 @@ We introduce iSPECTRON, a program that parses data from common quantum chemistry
     sc:name "ISPIDER Central" ;
     sc:url "http://www.ispider.manchester.ac.uk/cgi-bin/ProteomicSearch.pl" .
 
+<https://bio.tools/ispip> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0123,
+        edam:topic_0128,
+        edam:topic_0749,
+        edam:topic_2275,
+        edam:topic_3534 ;
+    sc:citation <https://doi.org/10.1186/S12859-022-04852-2>,
+        "pmcid:PMC9316365",
+        "pubmed:35879651" ;
+    sc:description "Integrated structure-based protein interface prediction." ;
+    sc:featureList edam:operation_0321,
+        edam:operation_0474,
+        edam:operation_2575,
+        edam:operation_3659,
+        edam:operation_3899 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "ISPIP" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/eved1018/ISPIP" .
+
 <https://bio.tools/ispot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0154,
@@ -261036,22 +268723,22 @@ We introduce iSPECTRON, a program that parses data from common quantum chemistry
 
 <https://bio.tools/ispred> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1008" ;
-            sc:name "Polypeptide chain ID" ;
-            sc:sameAs "http://edamontology.org/data_1008" ],
+            sc:additionalType "http://edamontology.org/data_1008" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Polypeptide chain ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ] ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein structure" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1537" ;
-            sc:name "Protein structure report" ;
-            sc:sameAs "http://edamontology.org/data_1537" ],
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein structure" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1537" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Protein structure report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0160 ;
@@ -261072,7 +268759,7 @@ We introduce iSPECTRON, a program that parses data from common quantum chemistry
     biotools:primaryContact "Castrense Savojardo" .
 
 <https://bio.tools/isprf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0804,
         edam:topic_2640,
@@ -261091,7 +268778,7 @@ The code and dataset used in the construction of ISPRF.""" ;
     sc:url "https://immunotype.shinyapps.io/ISPRF/" .
 
 <https://bio.tools/issake> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3174 ;
     sc:citation "pubmed:19136549" ;
@@ -261103,7 +268790,7 @@ The code and dataset used in the construction of ISPRF.""" ;
     biotools:primaryContact "R.L. Warren" .
 
 <https://bio.tools/issec> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0130,
@@ -261124,8 +268811,21 @@ ISSEC adopts deep learning to learn specific patterns within predicted inter-res
     sc:name "ISSEC" ;
     sc:url "https://github.com/bigict/ISSEC/" .
 
+<https://bio.tools/isspred> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:description "This server is an attempt to help biologist identify Inteins hiding in their protein sequences." ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "isspred" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/isspred/index.html> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/isspred/index.html" .
+
 <https://bio.tools/istable> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0130,
         edam:topic_0199,
@@ -261142,7 +268842,7 @@ ISSEC adopts deep learning to learn specific patterns within predicted inter-res
     sc:url "http://predictor.nchu.edu.tw/istable/" .
 
 <https://bio.tools/istdeco> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0621,
@@ -261160,7 +268860,7 @@ ISSEC adopts deep learning to learn specific patterns within predicted inter-res
     biotools:primaryContact "Axel Andersson" .
 
 <https://bio.tools/istech_snpanalyzer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0199,
@@ -261178,7 +268878,7 @@ ISSEC adopts deep learning to learn specific patterns within predicted inter-res
     sc:url "http://snp.istech.info/istech/board/login_form.jsp" .
 
 <https://bio.tools/isth> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0637,
         edam:topic_3303,
@@ -261197,25 +268897,8 @@ ISTH’s Common Data Elements (CDE) project provides investigators with pre-defi
     sc:name "ISTH" ;
     sc:url "http://isth.breakthrough.healthcare" .
 
-<https://bio.tools/isthmic_spondylolisthesis_degenerative_spondylolisthesis> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0621,
-        edam:topic_0634,
-        edam:topic_3444 ;
-    sc:citation <https://doi.org/10.1097/MD.0000000000018157>,
-        "pubmed:31804327" ;
-    sc:description """Association of MRI-defined lumbar paraspinal muscle mass and slip percentage in degenerative and isthmic spondylolisthesis.
-
-The objective of this study is to investigate the role of paraspinal muscles in the progression of different types of spondylolisthesis by examining the correlation between cross-sectional area (CSA) of lumbar paraspinal muscle and slip percentage (SP) in degenerative spondylolisthesis and isthmic spondylolisthesis. A multicenter retrospective analysis was carried out including 219 subjects diagnosed with lumbar spondylolisthesis. Using T2-weighted axial magnetic resonance imgaging, CSAs of the psoas major (PM), multifidus (MU), and erector spinae were measured and divided by L5 vertebral body (VB) CSA. SP was measured using sagittal T2-weighted images.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'spondylolisthesis degenerative spondylolisthesis', 'isthmic spondylolisthesis', 'isthmic spondylolisthesis degenerative', 'VB'""" ;
-    sc:featureList edam:operation_3659 ;
-    sc:name "isthmic spondylolisthesis degenerative spondylolisthesis" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31804327" .
-
 <https://bio.tools/isuc-pseaac> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -261232,7 +268915,7 @@ The objective of this study is to investigate the role of paraspinal muscles in
     biotools:primaryContact "Yan Xu" .
 
 <https://bio.tools/isuc-pseopt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0108,
@@ -261249,7 +268932,7 @@ The objective of this study is to investigate the role of paraspinal muscles in
     biotools:primaryContact "Xiao Xuan" .
 
 <https://bio.tools/isulf-cys> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0123,
         edam:topic_0128,
@@ -261269,7 +268952,7 @@ The objective of this study is to investigate the role of paraspinal muscles in
     biotools:primaryContact "Yan Xu Close" .
 
 <https://bio.tools/isumok-pseaac> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0203,
@@ -261291,8 +268974,22 @@ The objective of this study is to investigate the role of paraspinal muscles in
         "Windows" ;
     sc:url "https://github.com/csbioinfopk/iSumoK-PseAAC" .
 
+<https://bio.tools/isunstruct> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:citation <https://doi.org/10.1088/1478-3975/8/3/035004>,
+        "pubmed:21572175" ;
+    sc:description "IsUnstruct is a new method based on the Ising model used for the prediction of disordered residues from protein sequence alone." ;
+    sc:isAccessibleForFree true ;
+    sc:name "IsUnstruct" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareVersion "v2.02" ;
+    sc:url "http://bioinfo.protres.ru/IsUnstruct/" .
+
 <https://bio.tools/isvase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_3170,
@@ -261311,7 +269008,7 @@ The objective of this study is to investigate the role of paraspinal muscles in
     biotools:primaryContact "Hasan Awad Aljohi" .
 
 <https://bio.tools/iswarm-cg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0176,
         edam:topic_2275,
@@ -261334,7 +269031,7 @@ Optimizing bonded terms of a CG model.""" ;
     sc:url "http://www.github.com/GMPavanLab/SwarmCG" .
 
 <https://bio.tools/it3se-px> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0121,
@@ -261351,7 +269048,7 @@ Optimizing bonded terms of a CG model.""" ;
     sc:url "https://github.com/taigangliu/iT3SE-PX" .
 
 <https://bio.tools/itagplot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3168 ;
@@ -261367,7 +269064,7 @@ Optimizing bonded terms of a CG model.""" ;
     biotools:primaryContact "Jeong-Hyeon Choi" .
 
 <https://bio.tools/italics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0102,
@@ -261386,7 +269083,7 @@ Optimizing bonded terms of a CG model.""" ;
     biotools:primaryContact "Guillem Rigaill" .
 
 <https://bio.tools/itar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0749,
@@ -261406,7 +269103,7 @@ Optimizing bonded terms of a CG model.""" ;
     biotools:primaryContact "Chao Cheng" .
 
 <https://bio.tools/itaxotools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Suite" ;
     sc:applicationSubCategory edam:topic_0637,
@@ -261424,7 +269121,7 @@ Optimizing bonded terms of a CG model.""" ;
     biotools:primaryContact <https://orcid.org/0000-0003-0747-0817> .
 
 <https://bio.tools/iterativebma> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -261443,7 +269140,7 @@ Optimizing bonded terms of a CG model.""" ;
     biotools:primaryContact "Ka Yee Yeung" .
 
 <https://bio.tools/iterativebmasurv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -261463,7 +269160,7 @@ Optimizing bonded terms of a CG model.""" ;
     biotools:primaryContact "Ka Yee Yeung" .
 
 <https://bio.tools/iterclust> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/bty176>,
@@ -261483,7 +269180,7 @@ Optimizing bonded terms of a CG model.""" ;
     biotools:primaryContact "Hongxu Ding" .
 
 <https://bio.tools/itercluster> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0769,
@@ -261504,7 +269201,7 @@ The IterCluster is a barcode clustering algorithm fragment read analysis. There
     sc:url "https://github.com/JianCong-WENG/IterCluster" .
 
 <https://bio.tools/iteremoval> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3168,
@@ -261522,8 +269219,28 @@ The IterCluster is a barcode clustering algorithm fragment read analysis. There
     sc:url "http://bioconductor.org/packages/release/bioc/html/iteremoval.html" ;
     biotools:primaryContact "Jiacheng Chuan" .
 
+<https://bio.tools/ithermo> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Desktop application",
+        "Library" ;
+    sc:applicationSubCategory edam:topic_0078,
+        edam:topic_3292,
+        edam:topic_3297,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.3389/FMICB.2022.790063>,
+        "pmcid:PMC8902591",
+        "pubmed:35273581" ;
+    sc:description "iThermo: Thermophilic Protein Prediction uses the protein sequence information to predict the thermophilic proteins. It is based on Multi-layer Perceptron classifier trained model." ;
+    sc:featureList edam:operation_0267,
+        edam:operation_0477,
+        edam:operation_3767 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "iThermo" ;
+    sc:url "http://lin-group.cn/server/iThermo/index.html" .
+
 <https://bio.tools/iti> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0654,
@@ -261540,8 +269257,27 @@ The IterCluster is a barcode clustering algorithm fragment read analysis. There
     sc:softwareVersion "2.0" ;
     sc:url "http://iti.sourceforge.net/" .
 
+<https://bio.tools/itime> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0625,
+        edam:topic_2269,
+        edam:topic_3382,
+        edam:topic_3518 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAB757>,
+        "pmcid:PMC8652029",
+        "pubmed:34734969" ;
+    sc:description """iTIME (interactive Tumor Immune MicroEnvironment) is a shiny application that creates interactive figures for examining spatial organization of individual tumors and provide basic spatial and summary information.
+https://fridleylab.shinyapps.io/iTIME/""" ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3443,
+        edam:operation_3799 ;
+    sc:name "iTIME" ;
+    sc:url "https://fridleylab.shinyapps.io/iTIME/" ;
+    biotools:primaryContact <https://orcid.org/0000-0001-7739-7956> .
+
 <https://bio.tools/itis-psetnc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_3510,
@@ -261557,16 +269293,38 @@ The IterCluster is a barcode clustering algorithm fragment read analysis. There
     sc:url "http://lin.uestc.edu.cn/server/iTIS-PseTNC" ;
     biotools:primaryContact "Hao Lin" .
 
+<https://bio.tools/ito> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0089,
+        edam:topic_0203,
+        edam:topic_3068,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1038/S41597-022-01435-X>,
+        "pmcid:PMC9205953",
+        "pubmed:35715466" ;
+    sc:description "A curated, ontology-based, large-scale knowledge graph of artificial intelligence tasks and benchmarks." ;
+    sc:featureList edam:operation_0224,
+        edam:operation_3096,
+        edam:operation_3559 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "ITO" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://openbiolink.github.io/ITOExplorer/" .
+
 <https://bio.tools/itol> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0872" ;
-            sc:name "Phylogenetic tree" ;
-            sc:sameAs "http://edamontology.org/data_0872" ] ;
+            sc:additionalType "http://edamontology.org/data_0872" ;
+            sc:encodingFormat "http://edamontology.org/format_3159" ;
+            sc:name "Phylogenetic tree" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1707" ;
-            sc:name "Phylogenetic tree image" ;
-            sc:sameAs "http://edamontology.org/data_1707" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1707" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Phylogenetic tree image" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3174,
@@ -261591,7 +269349,7 @@ The IterCluster is a barcode clustering algorithm fragment read analysis. There
     biotools:primaryContact "Georg Zeller" .
 
 <https://bio.tools/itr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3360,
         edam:topic_3379,
@@ -261608,8 +269366,50 @@ ITR-Forest is used to generate individualized treatment rule (ITR) for both rand
     sc:name "ITR" ;
     sc:url "https://github.com/kdoub5ha/ITR.Forest" .
 
+<https://bio.tools/itrex> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_2640,
+        edam:topic_3360,
+        edam:topic_3382,
+        edam:topic_3577 ;
+    sc:citation <https://doi.org/10.1016/J.PHRS.2021.105996>,
+        "pubmed:34848323" ;
+    sc:description "Interactive exploration of mono- and combination therapy dose response profiling data." ;
+    sc:featureList edam:operation_3799 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "iTReX" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://itrex.kitz-heidelberg.de" .
+
+<https://bio.tools/itritikbdb> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0128,
+        edam:topic_0749,
+        edam:topic_0780,
+        edam:topic_2229,
+        edam:topic_3324 ;
+    sc:citation <https://doi.org/10.3390/IJMS23137455>,
+        "pmcid:PMC9267065",
+        "pubmed:35806459" ;
+    sc:description "A Functional Annotation Resource for Deciphering the Complete Interaction Networks in Wheat-Karnal Bunt Pathosystem." ;
+    sc:featureList edam:operation_2489,
+        edam:operation_2492,
+        edam:operation_3925 ;
+    sc:isAccessibleForFree true ;
+    sc:name "iTritiKBdb" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://bioinfo.usu.edu/tritikbdb/" .
+
 <https://bio.tools/its2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0097,
@@ -261631,13 +269431,8 @@ ITR-Forest is used to generate individualized treatment rule (ITR) for both rand
     biotools:primaryContact "Dr. Matthias Wolf",
         "Prof. Dr. Jörg Schultz" .
 
-<https://bio.tools/its_amplicon_sequencing> a sc:SoftwareApplication ;
-    sc:description "As a leading provider of NGS services and a partner of Illumina, CD Genomics offers a portfolio of solutions for metagenomics sequencing. 16S/18S/ITS amplicon sequencing is characterized by cost-efficiency, high-speed and practicability to help you identify and investigate the microbial community. With over 10 years of experience, we can totally meet your project requirements and budgets in the exploration of microbial biodiversity. If you are interested in what CD Genomics can do with the 16S/18S/ITS Amplicon Sequencing, please do not hesitate to contact us. We are more than happy to be of assistance!" ;
-    sc:name "ITS Amplicon Sequencing" ;
-    sc:url "https://www.cd-genomics.com/16S-18S-ITS-Amplicon-Sequencing.html" .
-
 <https://bio.tools/itsfm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3500 ;
     sc:citation <https://doi.org/10.1101/2021.01.09.426033> ;
@@ -261650,7 +269445,7 @@ Identify, Track and Segment sound (by) Frequency (and its) Modulation — itsFM
     sc:url "https://itsfm.readthedocs.io" .
 
 <https://bio.tools/itsonedb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_3174 ;
     sc:author "C.N.R. - IBIOM",
@@ -261669,21 +269464,39 @@ Identify, Track and Segment sound (by) Frequency (and its) Modulation — itsFM
     biotools:primaryContact "Graziano Pesole" .
 
 <https://bio.tools/itsonewb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "ITSoneWB (ITSone WorkBench) is a Galaxy-based bioinformatic environment where comprehensive and high-quality reference data are connected with established pipelines and new tools in an automated and easy-to-use service targeted at global taxonomic analysis of eukaryotic communities based on Internal Transcribed Spacer 1 variants high-throughput sequencing." ;
     sc:name "ITSoneWB" ;
     sc:url "http://itsonewb.cloud.ba.infn.it/galaxy" .
 
+<https://bio.tools/itsx> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0659,
+        edam:topic_3301 ;
+    sc:author "Johan Bengtsson-Palme" ;
+    sc:citation <https://doi.org/10.1111/2041-210X.12073> ;
+    sc:description "TSx is an open source software utility to extract the highly variable ITS1 and ITS2 subregions from ITS sequences, which is commonly used as a molecular barcode for e.g. fungi. As the inclusion of parts of the neighbouring, very conserved, ribosomal genes (SSU, 5S and LSU rRNA sequences) in the sequence identification process can lead to severely misleading results, ITSx identifies and extracts only the ITS regions themselves." ;
+    sc:featureList edam:operation_0253 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "ITSx" ;
+    sc:operatingSystem "Linux",
+        "Mac" ;
+    sc:softwareHelp <https://microbiology.se/publ/itsx_users_guide.pdf> ;
+    sc:url "https://microbiology.se/software/itsx/" ;
+    biotools:primaryContact "Johan Bengtsson-Palme" .
+
 <https://bio.tools/itsxpress> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2975" ;
-            sc:name "Nucleic acid sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_2975" ] ;
+            sc:additionalType "http://edamontology.org/data_2975" ;
+            sc:encodingFormat "http://edamontology.org/format_2182" ;
+            sc:name "Nucleic acid sequence (raw)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2975" ;
-            sc:name "Nucleic acid sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_2975" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2975" ;
+            sc:encodingFormat "http://edamontology.org/format_2545" ;
+            sc:name "Nucleic acid sequence (raw)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3174,
         edam:topic_3697 ;
@@ -261699,7 +269512,7 @@ Identify, Track and Segment sound (by) Frequency (and its) Modulation — itsFM
     biotools:primaryContact "Adam Rivers" .
 
 <https://bio.tools/ittca-hybrid> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2640,
@@ -261716,8 +269529,34 @@ iTTCA-Hybrid: Improved and robust identification of tumor T cell antigens by hyb
     sc:name "iTTCA-Hybrid" ;
     sc:url "http://camt.pythonanywhere.com/iTTCA-Hybrid" .
 
+<https://bio.tools/ittca-rf> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_2640,
+        edam:topic_2830,
+        edam:topic_3400,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1186/S12967-021-03084-X>,
+        "pmcid:PMC8554859",
+        "pubmed:34706730" ;
+    sc:description "A random forest predictor for tumor T cell antigens." ;
+    sc:featureList edam:operation_0252,
+        edam:operation_0416,
+        edam:operation_3936 ;
+    sc:isAccessibleForFree true ;
+    sc:name "iTTCA-RF" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://lab.malab.cn/~acy/iTTCA" .
+
 <https://bio.tools/iubiq-lys> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0128,
@@ -261734,7 +269573,7 @@ iTTCA-Hybrid: Improved and robust identification of tumor T cell antigens by hyb
     biotools:primaryContact "Xiao Xuan" .
 
 <https://bio.tools/iucnn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_0621,
@@ -261754,7 +269593,7 @@ iTTCA-Hybrid: Improved and robust identification of tumor T cell antigens by hyb
     sc:url "https://github.com/azizka/IUCNN" .
 
 <https://bio.tools/iumami-scm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -261773,7 +269612,7 @@ This is the website for predicting Umami Peptides from the publication called ."
     sc:url "http://camt.pythonanywhere.com/iUmami-SCM" .
 
 <https://bio.tools/iupacpal> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0157,
         edam:topic_0621,
@@ -261793,7 +269632,7 @@ IUPACpal is an exact tool for efficient identification of inverted repeats in IU
     sc:url "https://sourceforge.net/projects/iupacpal/" .
 
 <https://bio.tools/iuphar-db> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0602,
@@ -261814,7 +269653,7 @@ IUPACpal is an exact tool for efficient identification of inverted repeats in IU
     biotools:primaryContact "Anthony J. Harmar" .
 
 <https://bio.tools/iupred3> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0736,
@@ -261828,12 +269667,17 @@ IUPACpal is an exact tool for efficient identification of inverted repeats in IU
         edam:operation_0470,
         edam:operation_1777,
         edam:operation_3904 ;
+    sc:isAccessibleForFree true ;
     sc:name "IUPred3" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://iupred3.elte.hu/help_new> ;
     sc:url "https://iupred3.elte.hu" ;
     biotools:primaryContact <https://orcid.org/0000-0002-3624-5937> .
 
 <https://bio.tools/iupred_ws_jabaws> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btr304> ;
@@ -261848,8 +269692,32 @@ IUPACpal is an exact tool for efficient identification of inverted repeats in IU
     sc:softwareVersion "1" ;
     sc:url "http://www.compbio.dundee.ac.uk/jabaws/" .
 
+<https://bio.tools/iusmmt> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0654,
+        edam:topic_2640,
+        edam:topic_3295,
+        edam:topic_3674 ;
+    sc:citation <https://doi.org/10.1371/JOURNAL.PCBI.1009250>,
+        "pmcid:PMC8437300",
+        "pubmed:34464378" ;
+    sc:description "Intersection-union survival mixture-adjusted mediation test (IUSMMT) is a R procedure for examining whether a set of gene-based methylation loci affects cancer survival through gene expression under the framework of mixed models." ;
+    sc:featureList edam:operation_2495,
+        edam:operation_3196,
+        edam:operation_3206,
+        edam:operation_3207 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "IUSMMT" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/biostatpzeng/IUSMMT" .
+
 <https://bio.tools/iuta> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3053,
         edam:topic_3170,
@@ -261869,7 +269737,7 @@ IUPACpal is an exact tool for efficient identification of inverted repeats in IU
     biotools:primaryContact "Liang Niu" .
 
 <https://bio.tools/iva> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0157,
@@ -261884,7 +269752,7 @@ IUPACpal is an exact tool for efficient identification of inverted repeats in IU
     sc:url "http://sanger-pathogens.github.io/iva/" .
 
 <https://bio.tools/ivar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3071,
         edam:topic_3168,
@@ -261902,22 +269770,22 @@ iVar - DataBase of Genomics Variants.""" ;
 
 <https://bio.tools/ivas> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3495" ;
-            sc:name "RNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3495" ],
+            sc:additionalType "http://edamontology.org/data_1270" ;
+            sc:encodingFormat "http://edamontology.org/format_2306" ;
+            sc:name "Feature table" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1270" ;
-            sc:name "Feature table" ;
-            sc:sameAs "http://edamontology.org/data_1270" ] ;
+            sc:additionalType "http://edamontology.org/data_3495" ;
+            sc:encodingFormat "http://edamontology.org/format_2306" ;
+            sc:name "RNA sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1669" ;
-            sc:name "P-value" ;
-            sc:sameAs "http://edamontology.org/data_1669" ],
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3603" ;
+            sc:name "Plot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1669" ;
+            sc:encodingFormat "http://edamontology.org/format_3603" ;
+            sc:name "P-value" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3170,
@@ -261936,8 +269804,29 @@ iVar - DataBase of Genomics Variants.""" ;
     sc:url "http://bioconductor.org/packages/release/bioc/html/IVAS.html" ;
     biotools:primaryContact "Seonggyun Han" .
 
+<https://bio.tools/ivayu> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Desktop application" ;
+    sc:applicationSubCategory edam:topic_0749,
+        edam:topic_2269,
+        edam:topic_3572 ;
+    sc:citation <https://doi.org/10.3390/S21227726>,
+        "pmcid:PMC8618008",
+        "pubmed:34833800" ;
+    sc:description "An Open-Source Toolbox for Visualization and Analysis of Crowd-Sourced Sensor Data." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3435,
+        edam:operation_3436 ;
+    sc:isAccessibleForFree true ;
+    sc:license "CC-BY-NC-SA-4.0" ;
+    sc:name "iVayu" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/sachit27/VAYU" .
+
 <https://bio.tools/iview> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_2275,
@@ -261954,7 +269843,7 @@ iVar - DataBase of Genomics Variants.""" ;
     biotools:primaryContact "Jacky Lee Hong Jian" .
 
 <https://bio.tools/ivkc-otc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0130,
         edam:topic_0623,
@@ -261971,7 +269860,7 @@ iVar - DataBase of Genomics Variants.""" ;
     biotools:primaryContact "Hao Lin" .
 
 <https://bio.tools/ivs-caffe> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3474 ;
     sc:citation <https://doi.org/10.1109/TNNLS.2021.3072145>,
@@ -261987,7 +269876,7 @@ iVar - DataBase of Genomics Variants.""" ;
     sc:url "https://github.com/apple35932003/IVS-Caffe" .
 
 <https://bio.tools/ivterm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_3174,
@@ -262005,7 +269894,7 @@ iVar - DataBase of Genomics Variants.""" ;
     sc:url "https://github.com/SJTU-CGM/ivTerm" .
 
 <https://bio.tools/ivygapse> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3168 ;
@@ -262024,7 +269913,7 @@ iVar - DataBase of Genomics Variants.""" ;
     biotools:primaryContact "VJ Carey" .
 
 <https://bio.tools/iwa-mirna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -262048,7 +269937,7 @@ iVar - DataBase of Genomics Variants.""" ;
     sc:url "http://omicstudio.cloud:4005" .
 
 <https://bio.tools/iwhale> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0769,
@@ -262072,7 +269961,7 @@ All the steps of the pipeline and their dependencies are controlled by SCons so
     sc:url "https://github.com/alexcoppe/iWhale" .
 
 <https://bio.tools/iwtomics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/bty090> ;
@@ -262093,7 +269982,7 @@ All the steps of the pipeline and their dependencies are controlled by SCons so
     biotools:primaryContact "Marzia A Cremona" .
 
 <https://bio.tools/j> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3071 ;
@@ -262108,7 +269997,7 @@ All the steps of the pipeline and their dependencies are controlled by SCons so
     sc:url "http://churchill.jax.org/software/jqtl.shtml" .
 
 <https://bio.tools/j-circos> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0097,
@@ -262126,7 +270015,7 @@ All the steps of the pipeline and their dependencies are controlled by SCons so
         "Jiyuan An" .
 
 <https://bio.tools/j-express> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0102,
@@ -262145,7 +270034,7 @@ All the steps of the pipeline and their dependencies are controlled by SCons so
     sc:url "http://jexpress.bioinfo.no/site/" .
 
 <https://bio.tools/j-modl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3277,
         edam:topic_3444,
@@ -262160,8 +270049,32 @@ Joint model-based deep learning for parallel imaging.""" ;
     sc:name "J-MoDL" ;
     sc:url "https://github.com/hkaggarwal/J-MoDL" .
 
+<https://bio.tools/j-space> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0084,
+        edam:topic_0199,
+        edam:topic_2269,
+        edam:topic_2640,
+        edam:topic_3168 ;
+    sc:citation <https://doi.org/10.1186/S12859-022-04779-8>,
+        "pmcid:PMC9270769",
+        "pubmed:35804300" ;
+    sc:description "A Julia package for the simulation of spatial models of cancer evolution and of sequencing experiments." ;
+    sc:featureList edam:operation_0324,
+        edam:operation_2426,
+        edam:operation_3196,
+        edam:operation_3227 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Other" ;
+    sc:name "J-SPACE" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/BIMIB-DISCo/J-Space.jl" .
+
 <https://bio.tools/jabaws> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Suite" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -262179,7 +270092,7 @@ Joint model-based deep learning for parallel imaging.""" ;
     sc:url "http://www.compbio.dundee.ac.uk/jabaws/" .
 
 <https://bio.tools/jackalope> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0102,
@@ -262200,7 +270113,7 @@ Joint model-based deep learning for parallel imaging.""" ;
     biotools:primaryContact "Lucas A. Nell" .
 
 <https://bio.tools/jackie> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0749,
@@ -262220,7 +270133,7 @@ JACKIE (Jackie and Albert’s CRISPR K-mer Instances Enumerator) scans the genom
     sc:url "http://crispr.software/JACKIE" .
 
 <https://bio.tools/jackstraw> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0797,
@@ -262238,7 +270151,7 @@ JACKIE (Jackie and Albert’s CRISPR K-mer Instances Enumerator) scans the genom
     biotools:primaryContact "Neo Christopher Chung" .
 
 <https://bio.tools/jacusa2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0769,
@@ -262255,7 +270168,7 @@ JACKIE (Jackie and Albert’s CRISPR K-mer Instances Enumerator) scans the genom
     sc:url "https://github.com/dieterich-lab/JACUSA2" .
 
 <https://bio.tools/jadis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0080,
@@ -262270,7 +270183,7 @@ JACKIE (Jackie and Albert’s CRISPR K-mer Instances Enumerator) scans the genom
     sc:url "http://wwwabi.snv.jussieu.fr/public/Jadis/" .
 
 <https://bio.tools/jaffal> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3170,
@@ -262289,7 +270202,7 @@ JACKIE (Jackie and Albert’s CRISPR K-mer Instances Enumerator) scans the genom
         <https://orcid.org/0000-0002-8461-7467> .
 
 <https://bio.tools/jags> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Script" ;
     sc:applicationSubCategory edam:topic_2269 ;
@@ -262307,14 +270220,14 @@ JACKIE (Jackie and Albert’s CRISPR K-mer Instances Enumerator) scans the genom
 
 <https://bio.tools/jali> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ],
+            sc:additionalType "http://edamontology.org/data_3154" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3154" ;
-            sc:name "Protein alignment" ;
-            sc:sameAs "http://edamontology.org/data_3154" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web API",
         "Web application" ;
@@ -262336,7 +270249,7 @@ JACKIE (Jackie and Albert’s CRISPR K-mer Instances Enumerator) scans the genom
     sc:url "http://bibiserv.cebitec.uni-bielefeld.de/jali" .
 
 <https://bio.tools/jamberoo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_2275 ;
     sc:description "Jamberoo (former JMolEditor) is a program for displaying, analyzing, editing, converting, and animating molecular systems." ;
@@ -262350,7 +270263,7 @@ JACKIE (Jackie and Albert’s CRISPR K-mer Instances Enumerator) scans the genom
     sc:url "http://sf.anu.edu.au/~vvv900/cct/appl/jmoleditor/index.html" .
 
 <https://bio.tools/jamg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0091,
@@ -262367,7 +270280,7 @@ JACKIE (Jackie and Albert’s CRISPR K-mer Instances Enumerator) scans the genom
     biotools:primaryContact <http://orcid.org/0000-0002-3635-6848> .
 
 <https://bio.tools/jami> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0622,
@@ -262383,8 +270296,31 @@ JACKIE (Jackie and Albert’s CRISPR K-mer Instances Enumerator) scans the genom
     biotools:primaryContact "Marcel H Schulz",
         "Markus List" .
 
+<https://bio.tools/jamir-eqtl> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0625,
+        edam:topic_0659,
+        edam:topic_2885,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.1093/DATABASE/BAAB072>,
+        "pmcid:PMC8570227",
+        "pubmed:34730175" ;
+    sc:description "Japanese genome-wide identification of microRNA expression quantitative trait loci across dementia types." ;
+    sc:featureList edam:operation_3196,
+        edam:operation_3792,
+        edam:operation_3799 ;
+    sc:isAccessibleForFree true ;
+    sc:name "JAMIR-eQTL" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://www.jamir-eqtl.org/" .
+
 <https://bio.tools/jamm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_3168,
@@ -262398,7 +270334,7 @@ JACKIE (Jackie and Albert’s CRISPR K-mer Instances Enumerator) scans the genom
     sc:url "https://github.com/mahmoudibrahim/jamm" .
 
 <https://bio.tools/jamming> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0602 ;
@@ -262414,7 +270350,7 @@ JACKIE (Jackie and Albert’s CRISPR K-mer Instances Enumerator) scans the genom
     sc:url "http://bis.ifc.unam.mx:8090/JAMMING/" .
 
 <https://bio.tools/jamss> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -262430,7 +270366,7 @@ JACKIE (Jackie and Albert’s CRISPR K-mer Instances Enumerator) scans the genom
     biotools:primaryContact "Rob Smith" .
 
 <https://bio.tools/janggu> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3168,
@@ -262454,7 +270390,7 @@ Janggu is a python package that facilitates deep learning in the context of geno
     sc:url "https://github.com/BIMSBbioinfo/janggu" .
 
 <https://bio.tools/jannovar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0634,
@@ -262472,8 +270408,28 @@ Janggu is a python package that facilitates deep learning in the context of geno
     sc:softwareHelp <http://jannovar.readthedocs.io/en/master/> ;
     sc:url "http://charite.github.io/software-jannovar.html" .
 
+<https://bio.tools/japonicusdb> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0121,
+        edam:topic_0219,
+        edam:topic_0621,
+        edam:topic_0623,
+        edam:topic_3299 ;
+    sc:citation <https://doi.org/10.1101/2021.09.23.461587> ;
+    sc:description "This is the Schizosaccharomyces japonicus genome database." ;
+    sc:featureList edam:operation_0224 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "JaponicusDB" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://www.japonicusdb.org" .
+
 <https://bio.tools/jar3d> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0099 ;
@@ -262488,8 +270444,19 @@ Janggu is a python package that facilitates deep learning in the context of geno
     sc:url "http://rna.bgsu.edu/jar3d" ;
     biotools:primaryContact "BGSU research" .
 
+<https://bio.tools/jarvis> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_3316 ;
+    sc:citation <https://doi.org/10.3390/e21111074> ;
+    sc:description "Efficient lossless compression of genomic sequences using a competitive prediction between two different classes of models: weighted stochastic repeat models and weighted context models." ;
+    sc:license "GPL-3.0" ;
+    sc:name "JARVIS" ;
+    sc:softwareVersion "1.0" ;
+    sc:url "https://github.com/cobilab/jarvis" .
+
 <https://bio.tools/jarvis-stm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0769,
@@ -262512,7 +270479,7 @@ The NIST Materials Data Curation System (MDCS) provides a means for capturing, s
     sc:url "https://jarvis.nist.gov/jarvisstm" .
 
 <https://bio.tools/jasmine-sv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0769,
@@ -262533,7 +270500,7 @@ The NIST Materials Data Curation System (MDCS) provides a means for capturing, s
         "Sergey Aganezov" .
 
 <https://bio.tools/jasp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0611,
         edam:topic_2269,
@@ -262552,50 +270519,41 @@ The NIST Materials Data Curation System (MDCS) provides a means for capturing, s
 
 <https://bio.tools/jaspar> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3494" ;
-            sc:name "DNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3494" ],
+            sc:additionalType "http://edamontology.org/data_2291" ;
+            sc:name "UniProt ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2755" ;
-            sc:name "Transcription factor name" ;
-            sc:sameAs "http://edamontology.org/data_2755" ],
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "DNA sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1119" ;
-            sc:name "JASPAR profile ID" ;
-            sc:sameAs "http://edamontology.org/data_1119" ],
+            sc:additionalType "http://edamontology.org/data_2755" ;
+            sc:name "Transcription factor name" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2732" ;
-            sc:name "Family name" ;
-            sc:sameAs "http://edamontology.org/data_2732" ],
+            sc:additionalType "http://edamontology.org/data_1119" ;
+            sc:name "JASPAR profile ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1868" ;
-            sc:name "Taxon" ;
-            sc:sameAs "http://edamontology.org/data_1868" ],
+            sc:additionalType "http://edamontology.org/data_2732" ;
+            sc:name "Family name" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3671" ;
-            sc:name "Text" ;
-            sc:sameAs "http://edamontology.org/data_3671" ],
+            sc:additionalType "http://edamontology.org/data_1045" ;
+            sc:name "Species name" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1045" ;
-            sc:name "Species name" ;
-            sc:sameAs "http://edamontology.org/data_1045" ],
+            sc:additionalType "http://edamontology.org/data_1868" ;
+            sc:name "Taxon" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1077" ;
-            sc:name "Transcription factor identifier" ;
-            sc:sameAs "http://edamontology.org/data_1077" ],
+            sc:additionalType "http://edamontology.org/data_3671" ;
+            sc:name "Text" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2291" ;
-            sc:name "UniProt ID" ;
-            sc:sameAs "http://edamontology.org/data_2291" ] ;
+            sc:additionalType "http://edamontology.org/data_1077" ;
+            sc:name "Transcription factor identifier" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1119" ;
-            sc:name "JASPAR profile ID" ;
-            sc:sameAs "http://edamontology.org/data_1119" ],
+            sc:additionalType "http://edamontology.org/data_1119" ;
+            sc:name "JASPAR profile ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1119" ;
-            sc:name "JASPAR profile ID" ;
-            sc:sameAs "http://edamontology.org/data_1119" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1119" ;
+            sc:encodingFormat "http://edamontology.org/format_3750" ;
+            sc:name "JASPAR profile ID" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web API",
         "Web application" ;
@@ -262639,7 +270597,7 @@ The NIST Materials Data Curation System (MDCS) provides a means for capturing, s
         "Wyeth Wasserman" .
 
 <https://bio.tools/jaspar2018> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0749 ;
     sc:citation <https://doi.org/10.1093/nar/gkx1126>,
@@ -262659,7 +270617,7 @@ The NIST Materials Data Curation System (MDCS) provides a means for capturing, s
     biotools:primaryContact "Ge Tan" .
 
 <https://bio.tools/jaspar_api> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0654,
@@ -262678,7 +270636,7 @@ The NIST Materials Data Curation System (MDCS) provides a means for capturing, s
         "Aziz Khan" .
 
 <https://bio.tools/jaspar_ws> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0749 ;
@@ -262695,7 +270653,7 @@ The NIST Materials Data Curation System (MDCS) provides a means for capturing, s
     sc:url "http://api.bioinfo.no/wsdl/Jaspar_webservice_0.2.wsdl" .
 
 <https://bio.tools/jaspardb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0749 ;
     sc:citation <https://doi.org/10.1093/nar/gkv1176> ;
@@ -262710,7 +270668,7 @@ The NIST Materials Data Curation System (MDCS) provides a means for capturing, s
     sc:url "http://api.bioinfo.no/wsdl/JasparDB.wsdl" .
 
 <https://bio.tools/jasper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3174,
         edam:topic_3382,
@@ -262729,7 +270687,7 @@ The NIST Materials Data Curation System (MDCS) provides a means for capturing, s
     biotools:primaryContact "Giri Narasimhan" .
 
 <https://bio.tools/jaspextract> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3512 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -262760,14 +270718,12 @@ The NIST Materials Data Curation System (MDCS) provides a means for capturing, s
 
 <https://bio.tools/jaspscan> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0916" ;
-            sc:name "Gene report" ;
-            sc:sameAs "http://edamontology.org/data_0916" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0916" ;
+            sc:name "Gene report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0749 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -262798,18 +270754,18 @@ The NIST Materials Data Curation System (MDCS) provides a means for capturing, s
 
 <https://bio.tools/jass> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3590" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3590" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3590" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application",
         "Web service" ;
@@ -262839,7 +270795,7 @@ The NIST Materials Data Curation System (MDCS) provides a means for capturing, s
     biotools:primaryContact <http://orcid.org/0000-0002-7554-6783> .
 
 <https://bio.tools/jassa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0601,
         edam:topic_0634,
@@ -262856,7 +270812,7 @@ The NIST Materials Data Curation System (MDCS) provides a means for capturing, s
     biotools:primaryContact "Guillaume Beauclair" .
 
 <https://bio.tools/java_treeview> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0203 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/bth349>,
@@ -262871,7 +270827,7 @@ The NIST Materials Data Curation System (MDCS) provides a means for capturing, s
     sc:url "http://jtreeview.sourceforge.net/" .
 
 <https://bio.tools/javadl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0209,
         edam:topic_2640,
@@ -262889,7 +270845,7 @@ JavaDL is a deep learning program based on Java, freely available for download h
     sc:url "https://imdlab.mdanderson.org/JavaDL/JavaDL.php" .
 
 <https://bio.tools/jawamix5> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3053,
@@ -262906,8 +270862,26 @@ JavaDL is a deep learning program based on Java, freely available for download h
     sc:url "http://code.google.com/p/jawamix5/" ;
     biotools:primaryContact "Quan Lon" .
 
+<https://bio.tools/jax-cnv> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0622,
+        edam:topic_3673,
+        edam:topic_3958 ;
+    sc:citation <https://doi.org/10.1016/J.GPB.2021.06.003>,
+        "pubmed:35085778" ;
+    sc:description "JAX-CNV: clinical-graded copy number variation detector." ;
+    sc:featureList edam:operation_3227,
+        edam:operation_3920,
+        edam:operation_3961 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Other" ;
+    sc:name "JAX-CNV" ;
+    sc:operatingSystem "Linux" ;
+    sc:url "https://github.com/TheJacksonLaboratory/JAX-CNV" .
+
 <https://bio.tools/jbiclustge> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_3473 ;
@@ -262923,7 +270897,7 @@ JavaDL is a deep learning program based on Java, freely available for download h
     biotools:primaryContact "Rui Mendes" .
 
 <https://bio.tools/jbrowse> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0622 ;
     sc:citation <https://doi.org/10.1101/gr.094607.109> ;
@@ -262938,7 +270912,7 @@ JavaDL is a deep learning program based on Java, freely available for download h
     biotools:primaryContact "GMOD Support" .
 
 <https://bio.tools/jbrowser> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0622 ;
     sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAB459>,
@@ -262956,7 +270930,7 @@ JavaDL is a deep learning program based on Java, freely available for download h
     sc:url "https://github.com/GMOD/JBrowseR/" .
 
 <https://bio.tools/jcat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0621,
@@ -262977,7 +270951,7 @@ JavaDL is a deep learning program based on Java, freely available for download h
     biotools:primaryContact "Andreas Grote" .
 
 <https://bio.tools/jcdsa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2640,
@@ -262996,7 +270970,7 @@ JavaDL is a deep learning program based on Java, freely available for download h
     biotools:primaryContact <https://orcid.org/0000-0003-2272-6278> .
 
 <https://bio.tools/jchem_for_office> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_3314 ;
@@ -263011,7 +270985,7 @@ JavaDL is a deep learning program based on Java, freely available for download h
     sc:url "https://www.chemaxon.com/products/jchem-for-office/" .
 
 <https://bio.tools/jcnet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3334,
         edam:topic_3379,
@@ -263033,7 +271007,7 @@ This work was conducted at the Neuroimmunology Clinic (NIC) and Translation Neur
     sc:url "https://github.com/omarallouz/JCnet" .
 
 <https://bio.tools/jcs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3418,
@@ -263052,18 +271026,18 @@ Official repository of the paper: JCS: An explainable COVID-19 diagnosis system
 
 <https://bio.tools/jd2stat> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1245" ;
-            sc:name "Sequence cluster (protein)" ;
-            sc:sameAs "http://edamontology.org/data_1245" ],
+            sc:additionalType "http://edamontology.org/data_1245" ;
+            sc:encodingFormat "http://edamontology.org/format_2546" ;
+            sc:name "Sequence cluster (protein)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1246" ;
-            sc:name "Sequence cluster (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1246" ] ;
+            sc:additionalType "http://edamontology.org/data_1246" ;
+            sc:encodingFormat "http://edamontology.org/format_2200" ;
+            sc:name "Sequence cluster (nucleic acid)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0870" ;
-            sc:name "Sequence distance matrix" ;
-            sc:sameAs "http://edamontology.org/data_0870" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0870" ;
+            sc:encodingFormat "http://edamontology.org/format_1423" ;
+            sc:name "Sequence distance matrix" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1038/srep06504>,
@@ -263081,7 +271055,7 @@ Official repository of the paper: JCS: An explainable COVID-19 diagnosis system
     biotools:primaryContact <http://orcid.org/0000-0002-3729-8176> .
 
 <https://bio.tools/jdc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0128,
@@ -263102,7 +271076,7 @@ Official repository of the paper: JCS: An explainable COVID-19 diagnosis system
         "Qiu Xiao" .
 
 <https://bio.tools/jdftx> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3332 ;
@@ -263122,7 +271096,7 @@ Official repository of the paper: JCS: An explainable COVID-19 diagnosis system
     biotools:primaryContact <https://orcid.org/0000-0002-0625-4592> .
 
 <https://bio.tools/jdinac> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0622,
@@ -263140,7 +271114,7 @@ Official repository of the paper: JCS: An explainable COVID-19 diagnosis system
     biotools:primaryContact "Lei Xie" .
 
 <https://bio.tools/jdpd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0176,
@@ -263159,7 +271133,7 @@ Official repository of the paper: JCS: An explainable COVID-19 diagnosis system
     biotools:primaryContact "Achim Zielesny" .
 
 <https://bio.tools/jecho> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0166,
@@ -263175,7 +271149,7 @@ Official repository of the paper: JCS: An explainable COVID-19 diagnosis system
     sc:url "http://www.healthinformaticslab.org/supp/" .
 
 <https://bio.tools/jedi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_3170,
@@ -263193,7 +271167,7 @@ Abstract Circular RNA is a novel class of endogenous non-coding RNAs that have b
     sc:url "https://github.com/hallogameboy/JEDI" .
 
 <https://bio.tools/jedi-md> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0176,
         edam:topic_2269,
         edam:topic_3382 ;
@@ -263211,7 +271185,7 @@ Abstract Circular RNA is a novel class of endogenous non-coding RNAs that have b
     biotools:primaryContact <https://orcid.org/0000-0003-1206-3028> .
 
 <https://bio.tools/jellyfish> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0622 ;
@@ -263229,8 +271203,14 @@ Abstract Circular RNA is a novel class of endogenous non-coding RNAs that have b
     biotools:primaryContact "Carl Kingsford",
         "Guillaume Marçais" .
 
+<https://bio.tools/jellyfish_gfp_mrna> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:description "The GFP mRNA will express a green fluorescent protein, originally isolated from the jellyfish, Aequorea victoria. GFP could be used in a wide range of applications where they have functioned as a cell lineage tracer, reporter of gene expression, or as a measure of protein-protein interactions." ;
+    sc:name "Jellyfish GFP mRNA" ;
+    sc:url "https://integraterna.creative-biogene.com/jellyfish-gfp-mrna-item-pmrn-0001-470826.html" .
+
 <https://bio.tools/jensemb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0219,
         edam:topic_0622 ;
@@ -263247,7 +271227,7 @@ Abstract Circular RNA is a novel class of endogenous non-coding RNAs that have b
     biotools:primaryContact "Roslin Bioinformatics" .
 
 <https://bio.tools/jepeg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2269,
@@ -263262,7 +271242,7 @@ Abstract Circular RNA is a novel class of endogenous non-coding RNAs that have b
     sc:url "http://dleelab.github.io/jepeg/" .
 
 <https://bio.tools/jerman-enhancement-filter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -263280,7 +271260,7 @@ Abstract Circular RNA is a novel class of endogenous non-coding RNAs that have b
     biotools:primaryContact "Tim Jerman" .
 
 <https://bio.tools/jesam> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0654,
@@ -263297,7 +271277,7 @@ Abstract Circular RNA is a novel class of endogenous non-coding RNAs that have b
     sc:url "http://www.littlest.co.uk/software/bioinf/old_packages/jesam/jesam_paper.html" .
 
 <https://bio.tools/jevtrace> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0084,
@@ -263320,7 +271300,7 @@ Abstract Circular RNA is a novel class of endogenous non-coding RNAs that have b
     biotools:primaryContact "JEvTrace team" .
 
 <https://bio.tools/jflow> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3071,
@@ -263334,7 +271314,7 @@ Abstract Circular RNA is a novel class of endogenous non-coding RNAs that have b
     sc:url "http://jflow.toulouse.inra.fr/app/index.html" .
 
 <https://bio.tools/jfuzzymachine> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2275,
@@ -263350,7 +271330,7 @@ Elucidating mechanistic relationships among intracellular macromolecules is fund
     sc:url "https://github.com/paiyetan/jfuzzymachine" .
 
 <https://bio.tools/jgi_genome_portal> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0621,
@@ -263371,7 +271351,7 @@ Elucidating mechanistic relationships among intracellular macromolecules is fund
     biotools:primaryContact "I.V. Grigoriev" .
 
 <https://bio.tools/jhubiobank> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3170,
@@ -263394,7 +271374,7 @@ These instructions assume that you:.""" ;
     sc:url "https://github.com/Sage-Bionetworks/JHU-biobank" .
 
 <https://bio.tools/jiffynet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0602,
@@ -263410,7 +271390,7 @@ These instructions assume that you:.""" ;
     sc:url "http://www.jiffynet.org" .
 
 <https://bio.tools/jigcell_run_manager> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2259,
@@ -263428,7 +271408,7 @@ These instructions assume that you:.""" ;
     biotools:primaryContact "Alida Palmisano" .
 
 <https://bio.tools/jigsaw> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622 ;
     sc:citation <https://doi.org/10.1186/gb-2006-7-s1-s9> ;
@@ -263441,7 +271421,7 @@ These instructions assume that you:.""" ;
     sc:url "https://ccb.jhu.edu/software/jigsaw/index.shtml" .
 
 <https://bio.tools/jind> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_3170,
@@ -263458,7 +271438,7 @@ JIND is a framework for automated cell-type identification based on neural netwo
     sc:url "https://github.com/mohit1997/JIND" .
 
 <https://bio.tools/jmorp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3168,
@@ -263477,7 +271457,7 @@ jMorp: Japanese Multi Omics Reference Panel - Tohoku Medical Megabank Organizati
     sc:url "https://jmorp.megabank.tohoku.ac.jp" .
 
 <https://bio.tools/jmrui> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3384,
         edam:topic_3444,
@@ -263496,14 +271476,13 @@ jMorp: Japanese Multi Omics Reference Panel - Tohoku Medical Megabank Organizati
 
 <https://bio.tools/jmzml> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2129" ;
-            sc:name "File format name" ;
-            sc:sameAs "http://edamontology.org/data_2129" ] ;
+            sc:additionalType "http://edamontology.org/data_2129" ;
+            sc:encodingFormat "http://edamontology.org/format_3244" ;
+            sc:name "File format name" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2129" ;
-            sc:name "File format name" ;
-            sc:sameAs "http://edamontology.org/data_2129" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2129" ;
+            sc:name "File format name" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121 ;
     sc:citation <https://doi.org/10.1002/pmic.200900719> ;
@@ -263520,10 +271499,10 @@ jMorp: Japanese Multi Omics Reference Panel - Tohoku Medical Megabank Organizati
 
 <https://bio.tools/jmzreader> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3653" ;
+            sc:name "Mass spectrometry spectra" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0121 ;
     sc:citation <https://doi.org/10.1002/pmic.201100578> ;
@@ -263535,7 +271514,7 @@ jMorp: Japanese Multi Omics Reference Panel - Tohoku Medical Megabank Organizati
     biotools:primaryContact "PRIDE Helpdesk" .
 
 <https://bio.tools/jmztab> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3172 ;
@@ -263552,18 +271531,18 @@ jMorp: Japanese Multi Omics Reference Panel - Tohoku Medical Megabank Organizati
 
 <https://bio.tools/jmztab-m> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ],
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:encodingFormat "http://edamontology.org/format_3681" ;
+            sc:name "Mass spectrometry data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3509" ;
-            sc:name "Ontology mapping" ;
-            sc:sameAs "http://edamontology.org/data_3509" ] ;
+            sc:additionalType "http://edamontology.org/data_3509" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Ontology mapping" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:encodingFormat "http://edamontology.org/format_3681" ;
+            sc:name "Mass spectrometry data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0089,
@@ -263591,7 +271570,7 @@ jMorp: Japanese Multi Omics Reference Panel - Tohoku Medical Megabank Organizati
     biotools:primaryContact <https://orcid.org/0000-0002-6540-6875> .
 
 <https://bio.tools/jnmf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0085,
         edam:topic_0622,
@@ -263607,7 +271586,7 @@ jMorp: Japanese Multi Omics Reference Panel - Tohoku Medical Megabank Organizati
     sc:url "http://page.amss.ac.cn/shihua.zhang/software.html" .
 
 <https://bio.tools/jnmfma> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3391 ;
@@ -263619,7 +271598,7 @@ jMorp: Japanese Multi Omics Reference Panel - Tohoku Medical Megabank Organizati
     sc:url "http://micblab.iim.ac.cn/jnmfma/" .
 
 <https://bio.tools/joda> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0204,
@@ -263640,7 +271619,7 @@ jMorp: Japanese Multi Omics Reference Panel - Tohoku Medical Megabank Organizati
     biotools:primaryContact <http://orcid.org/0000-0002-1320-6695> .
 
 <https://bio.tools/john-hopkins-covid19-cases-loader> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3305,
@@ -263657,7 +271636,7 @@ jMorp: Japanese Multi Omics Reference Panel - Tohoku Medical Megabank Organizati
     biotools:primaryContact "Axel Ahrens" .
 
 <https://bio.tools/johns_hopkins_coronavirus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0781,
@@ -263671,7 +271650,7 @@ jMorp: Japanese Multi Omics Reference Panel - Tohoku Medical Megabank Organizati
     sc:url "https://coronavirus.jhu.edu/map.html" .
 
 <https://bio.tools/joinerml> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3474,
@@ -263691,7 +271670,7 @@ jMorp: Japanese Multi Omics Reference Panel - Tohoku Medical Megabank Organizati
     biotools:primaryContact "Pete Philipson" .
 
 <https://bio.tools/joinet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0634,
@@ -263709,8 +271688,33 @@ jMorp: Japanese Multi Omics Reference Panel - Tohoku Medical Megabank Organizati
         "Windows" ;
     sc:url "https://github.com/rauschenberger/joinet" .
 
+<https://bio.tools/joint-snf> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0602,
+        edam:topic_0659,
+        edam:topic_2229,
+        edam:topic_3360,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.1016/J.CSBJ.2022.06.065>,
+        "pmcid:PMC9284445",
+        "pubmed:35860412" ;
+    sc:description """Joint-SNF method uses SNF to integrate the joint structure extracted by JIVE method to obtain the fusion matrix.
+The fused network enhances strong similarities and weakens spurious associations between samples while reducing the noise. The realization of Joint-SNF method relies on the following two important algorithms.
+Extraction of joint structures by JIVE; Similarity Network Fusion""" ;
+    sc:featureList edam:operation_2938,
+        edam:operation_3432,
+        edam:operation_3503 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "Joint-SNF" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/Sameerer/Joint-SNF" .
+
 <https://bio.tools/jointslm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3175 ;
     sc:citation "pubmed:21321017" ;
@@ -263724,7 +271728,7 @@ jMorp: Japanese Multi Omics Reference Panel - Tohoku Medical Megabank Organizati
     biotools:primaryContact "Alberto Magi" .
 
 <https://bio.tools/jonckheere-terpstra-trend-test> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:description "A nonparametric Test for Trend" ;
     sc:featureList edam:operation_2238 ;
@@ -263739,7 +271743,7 @@ jMorp: Japanese Multi Omics Reference Panel - Tohoku Medical Megabank Organizati
     biotools:primaryContact "Giuseppe Cardillo" .
 
 <https://bio.tools/jorca> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3077,
@@ -263761,7 +271765,7 @@ jMorp: Japanese Multi Omics Reference Panel - Tohoku Medical Megabank Organizati
     biotools:primaryContact "Esteban Pérez-Wohlfeil" .
 
 <https://bio.tools/jorg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0114,
@@ -263781,19 +271785,8 @@ jMorp: Japanese Multi Omics Reference Panel - Tohoku Medical Megabank Organizati
     sc:url "https://github.com/lmlui/Jorg" ;
     biotools:primaryContact "Adam P. Arkin" .
 
-<https://bio.tools/journals> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3303,
-        edam:topic_3384,
-        edam:topic_3390 ;
-    sc:citation <https://doi.org/10.4103/IJPVM.IJPVM_134_19>,
-        "pmcid:PMC6592134",
-        "pubmed:31360359" ;
-    sc:description "> LOW CONFIDENCE! | > CORRECT NAME OF TOOL COULD ALSO BE 'VOSviewer' | Altmetric Analysis of Contemporary Iranian Medical Journals | MoH Medical Journals بانک اطلاعات نشریات پزشکی کشور | سامانه اطلاعات نشریات پزشکی ایران Iran Medical Journals Information System" ;
-    sc:name "journals" ;
-    sc:url "http://journals.research.ac.ir/" .
-
 <https://bio.tools/joy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -263813,8 +271806,30 @@ jMorp: Japanese Multi Omics Reference Panel - Tohoku Medical Megabank Organizati
     sc:url "http://mizuguchilab.org/joy/" ;
     biotools:primaryContact "JOY Support" .
 
+<https://bio.tools/jpa> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_3172,
+        edam:topic_3407,
+        edam:topic_3520 ;
+    sc:citation <https://doi.org/10.3390/METABO12030212>,
+        "pmcid:PMC8952385",
+        "pubmed:35323655" ;
+    sc:description "JPA (short for Joint Metabolomics Data Processing and Annotation), an R package that offers comprehensive and streamlined metabolic feature extraction and annotation." ;
+    sc:featureList edam:operation_3215,
+        edam:operation_3435,
+        edam:operation_3937 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "JPA" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/HuanLab/JPA" .
+
 <https://bio.tools/jpcr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0632 ;
@@ -263833,7 +271848,7 @@ jMorp: Japanese Multi Omics Reference Panel - Tohoku Medical Megabank Organizati
     biotools:primaryContact "Support" .
 
 <https://bio.tools/jpg-image-eidors-model-converter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -263849,7 +271864,7 @@ jMorp: Japanese Multi Omics Reference Panel - Tohoku Medical Megabank Organizati
     biotools:primaryContact "Sathyanarayan Rao" .
 
 <https://bio.tools/jphmm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0160,
@@ -263874,30 +271889,30 @@ jMorp: Japanese Multi Omics Reference Panel - Tohoku Medical Megabank Organizati
 
 <https://bio.tools/jphyloio> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1916" ;
-            sc:name "Alignment" ;
-            sc:sameAs "http://edamontology.org/data_1916" ],
+            sc:additionalType "http://edamontology.org/data_3028" ;
+            sc:encodingFormat "http://edamontology.org/format_3159" ;
+            sc:name "Taxonomy" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0872" ;
-            sc:name "Phylogenetic tree" ;
-            sc:sameAs "http://edamontology.org/data_0872" ],
+            sc:additionalType "http://edamontology.org/data_1916" ;
+            sc:encodingFormat "http://edamontology.org/format_1991" ;
+            sc:name "Alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3028" ;
-            sc:name "Taxonomy" ;
-            sc:sameAs "http://edamontology.org/data_3028" ] ;
+            sc:additionalType "http://edamontology.org/data_0872" ;
+            sc:encodingFormat "http://edamontology.org/format_3159" ;
+            sc:name "Phylogenetic tree" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3028" ;
-            sc:name "Taxonomy" ;
-            sc:sameAs "http://edamontology.org/data_3028" ],
+            sc:additionalType "http://edamontology.org/data_3028" ;
+            sc:encodingFormat "http://edamontology.org/format_3159" ;
+            sc:name "Taxonomy" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0872" ;
-            sc:name "Phylogenetic tree" ;
-            sc:sameAs "http://edamontology.org/data_0872" ],
+            sc:additionalType "http://edamontology.org/data_0872" ;
+            sc:encodingFormat "http://edamontology.org/format_3159" ;
+            sc:name "Phylogenetic tree" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1916" ;
-            sc:name "Alignment" ;
-            sc:sameAs "http://edamontology.org/data_1916" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1916" ;
+            sc:encodingFormat "http://edamontology.org/format_1997" ;
+            sc:name "Alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3293,
@@ -263926,7 +271941,7 @@ jMorp: Japanese Multi Omics Reference Panel - Tohoku Medical Megabank Organizati
     biotools:primaryContact "Ben C. Stöver" .
 
 <https://bio.tools/jpop> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0085,
         edam:topic_0654,
@@ -263949,7 +271964,7 @@ jMorp: Japanese Multi Omics Reference Panel - Tohoku Medical Megabank Organizati
     biotools:primaryContact "Ying Xu" .
 
 <https://bio.tools/jpred_3> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -263970,7 +271985,7 @@ jMorp: Japanese Multi Omics Reference Panel - Tohoku Medical Megabank Organizati
     biotools:primaryContact "Support" .
 
 <https://bio.tools/jpred_ws_jabaws> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3542 ;
@@ -263987,7 +272002,7 @@ jMorp: Japanese Multi Omics Reference Panel - Tohoku Medical Megabank Organizati
     sc:url "http://www.compbio.dundee.ac.uk/jabaws/" .
 
 <https://bio.tools/jpredictor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0203,
@@ -264006,7 +272021,7 @@ jMorp: Japanese Multi Omics Reference Panel - Tohoku Medical Megabank Organizati
     biotools:primaryContact "Marc Rehmsmeier" .
 
 <https://bio.tools/jprofilegrid> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0092,
@@ -264023,7 +272038,7 @@ jMorp: Japanese Multi Omics Reference Panel - Tohoku Medical Megabank Organizati
     sc:url "http://www.profilegrid.org/" .
 
 <https://bio.tools/jprogo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0203,
@@ -264038,7 +272053,7 @@ jMorp: Japanese Multi Omics Reference Panel - Tohoku Medical Megabank Organizati
     sc:url "http://www.jprogo.de/index.jsp" .
 
 <https://bio.tools/jpsa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_3382,
         edam:topic_3474 ;
@@ -264051,7 +272066,7 @@ jMorp: Japanese Multi Omics Reference Panel - Tohoku Medical Megabank Organizati
     sc:url "https://github.com/danfenghong/ECCV2018_J-Play" .
 
 <https://bio.tools/jronn_ws_jabaws> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btr304> ;
@@ -264067,7 +272082,7 @@ jMorp: Japanese Multi Omics Reference Panel - Tohoku Medical Megabank Organizati
     sc:url "http://www.compbio.dundee.ac.uk/jabaws/" .
 
 <https://bio.tools/js-ms> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -264088,7 +272103,7 @@ JavaScript Mass Spectrometry, a visualization GUI for Mass Spectrometry signal d
     sc:url "http://github.com/optimusmoose/jsms" .
 
 <https://bio.tools/jsbml> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2259 ;
@@ -264103,7 +272118,7 @@ JavaScript Mass Spectrometry, a visualization GUI for Mass Spectrometry signal d
     sc:url "http://sbml.org/Software/JSBML" .
 
 <https://bio.tools/jsom> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0804,
         edam:topic_3077,
@@ -264123,10 +272138,9 @@ JavaScript Mass Spectrometry, a visualization GUI for Mass Spectrometry signal d
 
 <https://bio.tools/jsparklines> a sc:SoftwareApplication ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1636" ;
-            sc:name "Heat map" ;
-            sc:sameAs "http://edamontology.org/data_1636" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1636" ;
+            sc:name "Heat map" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0092 ;
     sc:citation <https://doi.org/10.1002/pmic.201400356> ;
@@ -264141,7 +272155,7 @@ JavaScript Mass Spectrometry, a visualization GUI for Mass Spectrometry signal d
     sc:url "http://compomics.github.io/projects/jsparklines.html" .
 
 <https://bio.tools/jspecies> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0797,
@@ -264160,7 +272174,7 @@ JavaScript Mass Spectrometry, a visualization GUI for Mass Spectrometry signal d
     biotools:primaryContact "Ramon Rosselló Móra" .
 
 <https://bio.tools/jsphylosvg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_3293,
@@ -264176,7 +272190,7 @@ JavaScript Mass Spectrometry, a visualization GUI for Mass Spectrometry signal d
     sc:url "https://github.com/guyleonard/jsPhyloSVG" .
 
 <https://bio.tools/jspsych> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3382,
         edam:topic_3520,
@@ -264196,14 +272210,12 @@ The jspsych-psychophysics plugin is developed for the purpose of conducting onli
 
 <https://bio.tools/jsquid> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ] ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:name "Pathway or network" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:name "Pathway or network" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_2259 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btn213> ;
@@ -264219,7 +272231,7 @@ The jspsych-psychophysics plugin is developed for the purpose of conducting onli
     sc:url "http://jsquid.sbc.su.se/" .
 
 <https://bio.tools/jsrc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2229,
@@ -264240,14 +272252,14 @@ Clustering scRNA-seq by joint sparse representation clustering (jSRC) Overview:.
 
 <https://bio.tools/jtraml> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ] ;
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:encodingFormat "http://edamontology.org/format_3246" ;
+            sc:name "Mass spectrometry data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3246" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0121 ;
@@ -264264,7 +272276,7 @@ Clustering scRNA-seq by joint sparse representation clustering (jSRC) Overview:.
     sc:url "https://github.com/compomics/jtraml" .
 
 <https://bio.tools/juchmme> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation "pubmed:31250907" ;
@@ -264278,7 +272290,7 @@ Clustering scRNA-seq by joint sparse representation clustering (jSRC) Overview:.
     biotools:primaryContact <http://orcid.org/0000-0003-4935-2325> .
 
 <https://bio.tools/juicebox> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
@@ -264301,7 +272313,7 @@ Clustering scRNA-seq by joint sparse representation clustering (jSRC) Overview:.
         "The Center for Genome Architecture" .
 
 <https://bio.tools/juicer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0622,
@@ -264325,7 +272337,7 @@ Clustering scRNA-seq by joint sparse representation clustering (jSRC) Overview:.
         "The Center for Genome Architecture" .
 
 <https://bio.tools/jump3> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -264342,7 +272354,7 @@ Clustering scRNA-seq by joint sparse representation clustering (jSRC) Overview:.
     sc:url "http://homepages.inf.ed.ac.uk/vhuynht/software.html" .
 
 <https://bio.tools/jumper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0203,
@@ -264367,7 +272379,7 @@ Clustering scRNA-seq by joint sparse representation clustering (jSRC) Overview:.
     sc:url "https://github.com/elkebir-group/Jumper" .
 
 <https://bio.tools/jumpm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0621,
@@ -264387,8 +272399,38 @@ JUMPm is a software program for mass spectrometry-based metabolite identificatio
     sc:name "JUMPm" ;
     sc:url "http://www.stjuderesearch.org/site/lab/peng/jumpm" .
 
+<https://bio.tools/jumpt> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_3620" ;
+            sc:name "Expression data" ] ;
+    bsc:output [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_3620" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0080,
+        edam:topic_0121,
+        edam:topic_0154,
+        edam:topic_3315,
+        edam:topic_3520 ;
+    sc:citation <https://doi.org/10.1021/ACS.ANALCHEM.1C02309>,
+        "pubmed:34587451" ;
+    sc:description "JUMPt (JUMP-turnover) software determines the protein turnover rates in pulse SILAC labeled animals using mass spectrometry (MS) data. JUMPt uses a novel differential equation-based mathematical model to calculate the reliable and accurate protein turnover rates. The proposed method calculates the half-life of individual proteins by fitting the dynamic data of unlabeled free Lys and protein-bound Lys from individual proteins simultaneously." ;
+    sc:featureList edam:operation_2476,
+        edam:operation_3638,
+        edam:operation_3715 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "JUMPt" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/JUMPSuite/JUMPt" .
+
 <https://bio.tools/junctionseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -264408,7 +272450,7 @@ JUMPm is a software program for mass spectrometry-based metabolite identificatio
     biotools:primaryContact "Stephen Hartley" .
 
 <https://bio.tools/june> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3305,
         edam:topic_3318,
@@ -264426,7 +272468,7 @@ A framework for high resolution Agent Based Modelling.""" ;
     sc:url "https://github.com/IDAS-Durham/JUNE" .
 
 <https://bio.tools/jupyter_book> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0605,
         edam:topic_3068,
@@ -264445,7 +272487,7 @@ A framework for high resolution Agent Based Modelling.""" ;
     sc:url "http://jupyterbook.org" .
 
 <https://bio.tools/jutils> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0625,
@@ -264465,7 +272507,7 @@ A framework for high resolution Agent Based Modelling.""" ;
     biotools:primaryContact <https://orcid.org/0000-0001-8124-2324> .
 
 <https://bio.tools/juxtapose> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3170,
@@ -264485,10 +272527,10 @@ A framework for high resolution Agent Based Modelling.""" ;
 
 <https://bio.tools/jvarkit> a sc:SoftwareApplication ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1050" ;
-            sc:name "File name" ;
-            sc:sameAs "http://edamontology.org/data_1050" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1050" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "File name" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3391 ;
     sc:author "Pierre Lindenbaum" ;
@@ -264510,7 +272552,7 @@ A framework for high resolution Agent Based Modelling.""" ;
     biotools:primaryContact "Pierre Lindenbaum" .
 
 <https://bio.tools/jvenn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_2269 ;
@@ -264526,7 +272568,7 @@ A framework for high resolution Agent Based Modelling.""" ;
     sc:url "http://bioinfo.genotoul.fr/jvenn/" .
 
 <https://bio.tools/jvirgel> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0121,
@@ -264546,7 +272588,7 @@ A framework for high resolution Agent Based Modelling.""" ;
     biotools:primaryContact "K. Hiller" .
 
 <https://bio.tools/jwes> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0769,
@@ -264570,7 +272612,7 @@ A framework for high resolution Agent Based Modelling.""" ;
     sc:url "https://github.com/drzeeshanahmed/JWES-DB" .
 
 <https://bio.tools/k-anonymity> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3068,
@@ -264587,7 +272629,7 @@ A framework for high resolution Agent Based Modelling.""" ;
     biotools:primaryContact "Yun William Yu" .
 
 <https://bio.tools/k-branches> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_2269,
@@ -264605,22 +272647,20 @@ A framework for high resolution Agent Based Modelling.""" ;
 
 <https://bio.tools/k-fold> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1127" ;
-            sc:name "PDB ID" ;
-            sc:sameAs "http://edamontology.org/data_1127" ],
+            sc:additionalType "http://edamontology.org/data_1008" ;
+            sc:name "Polypeptide chain ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ],
+            sc:additionalType "http://edamontology.org/data_1127" ;
+            sc:name "PDB ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1008" ;
-            sc:name "Polypeptide chain ID" ;
-            sc:sameAs "http://edamontology.org/data_1008" ] ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein structure" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0951" ;
-            sc:name "Statistical estimate score" ;
-            sc:sameAs "http://edamontology.org/data_0951" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0951" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Statistical estimate score" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0130 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btl610> ;
@@ -264638,7 +272678,7 @@ A framework for high resolution Agent Based Modelling.""" ;
         "Rita Casadio" .
 
 <https://bio.tools/k-link> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0102,
@@ -264655,7 +272695,7 @@ A framework for high resolution Agent Based Modelling.""" ;
     biotools:primaryContact "Lauren Bragg" .
 
 <https://bio.tools/k-map> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0821,
@@ -264672,7 +272712,7 @@ A framework for high resolution Agent Based Modelling.""" ;
     biotools:primaryContact "Tan Lab" .
 
 <https://bio.tools/k-pam> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0152,
@@ -264695,7 +272735,7 @@ The following documentation is to help the user in usage of K-PAM web server."""
     sc:url "http://www.iith.ac.in/K-PAM/" .
 
 <https://bio.tools/k-pax> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080 ;
@@ -264709,7 +272749,7 @@ The following documentation is to help the user in usage of K-PAM web server."""
     sc:url "http://www.helsinki.fi/bsg/software/K-PAX/" .
 
 <https://bio.tools/k-seq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0654,
@@ -264727,8 +272767,28 @@ The following documentation is to help the user in usage of K-PAM web server."""
     sc:url "https://github.com/ichen-lab-ucsb/k-seq" ;
     biotools:primaryContact "Irene A Chen" .
 
+<https://bio.tools/k2mem> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0199,
+        edam:topic_3174,
+        edam:topic_3837 ;
+    sc:citation <https://doi.org/10.1109/TCBB.2021.3117406>,
+        "pubmed:34606462" ;
+    sc:description "Discovering Discriminative K-mers From Sequencing Data for Metagenomic Reads Classification." ;
+    sc:featureList edam:operation_0362,
+        edam:operation_2995,
+        edam:operation_3472 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "K2Mem" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/davide92/K2Mem" .
+
 <https://bio.tools/k2n> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0097,
@@ -264749,7 +272809,7 @@ The following documentation is to help the user in usage of K-PAM web server."""
     biotools:primaryContact "Rob Kight" .
 
 <https://bio.tools/k2taxonomer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0637,
@@ -264767,17 +272827,8 @@ K2Taxonomer is an R package built around a "top-down" recursive partitioning fra
     sc:name "K2Taxonomer" ;
     sc:url "https://github.com/montilab/K2Taxonomer" .
 
-<https://bio.tools/kNN-Genome-Scans> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3053,
-        edam:topic_3168 ;
-    sc:citation <https://doi.org/10.1101/752758> ;
-    sc:description "> VERY_LOW CONFIDENCE! | > HOMEPAGE MISSING! | > CORRECT NAME OF TOOL COULD ALSO BE 'introgression', 'pievos101', 'genome-scan', 'PopGenome' | Genome Scans for Selection and Introgression based on k-nearest Neighbor Techniques | Abstract In recent years, genome-scan methods have been extensively used to detect local signatures of selection and introgression. Here, we introduce a series of versatile genome-scan methods that are based on non-parametric k -nearest neighbors (kNN) techniques, while incorporating pairwise Fixation Index ( F ST ) estimates and pairwise nucleotide differences ( d xy ) as features. Simulations were performed for both positive directional selection and introgression, with varying parameters, such as recombination rates, population background histories, the proportion of introgression, and the time of gene flow. We find that kNN-based methods perform remarkably well while yielding stable results almost over the entire range of k" ;
-    sc:featureList edam:operation_3891 ;
-    sc:name "kNN-Genome-Scans" ;
-    sc:url "https://doi.org/10.1101/752758" .
-
 <https://bio.tools/kOBCS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3421,
@@ -264790,7 +272841,7 @@ K2Taxonomer is an R package built around a "top-down" recursive partitioning fra
     sc:url "http://www.kobcs.info" .
 
 <https://bio.tools/kaas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0219,
@@ -264808,7 +272859,7 @@ K2Taxonomer is an R package built around a "top-down" recursive partitioning fra
     biotools:primaryContact "Contact Form" .
 
 <https://bio.tools/kablammo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0092,
@@ -264824,7 +272875,7 @@ K2Taxonomer is an R package built around a "top-down" recursive partitioning fra
     biotools:primaryContact "James Wasmuth" .
 
 <https://bio.tools/kaea> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0602,
@@ -264845,14 +272896,14 @@ K2Taxonomer is an R package built around a "top-down" recursive partitioning fra
 
 <https://bio.tools/kaiju> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2975" ;
-            sc:name "Nucleic acid sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_2975" ] ;
+            sc:additionalType "http://edamontology.org/data_2975" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Nucleic acid sequence (raw)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3028" ;
-            sc:name "Taxonomy" ;
-            sc:sameAs "http://edamontology.org/data_3028" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3028" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Taxonomy" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_3174 ;
@@ -264876,7 +272927,7 @@ K2Taxonomer is an R package built around a "top-down" recursive partitioning fra
         "Peter Menzel" .
 
 <https://bio.tools/kaikobase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0154,
@@ -264895,8 +272946,29 @@ K2Taxonomer is an R package built around a "top-down" recursive partitioning fra
     sc:url "https://kaikobase.dna.affrc.go.jp" ;
     biotools:primaryContact "Akiya Jouraku" .
 
+<https://bio.tools/kairosight> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_3300,
+        edam:topic_3382 ;
+    sc:citation <https://doi.org/10.3389/FPHYS.2021.752940>,
+        "pmcid:PMC8586513",
+        "pubmed:34777017" ;
+    sc:description "Open-Source Software for the Analysis of Cardiac Optical Data Collected From Multiple Species." ;
+    sc:featureList edam:operation_3435,
+        edam:operation_3443,
+        edam:operation_3454 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "KairoSight" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/kairosight/kairosight-2.0" .
+
 <https://bio.tools/kaks_calculator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_2533,
@@ -264913,7 +272985,7 @@ K2Taxonomer is an R package built around a "top-down" recursive partitioning fra
     biotools:primaryContact "Jun Yu" .
 
 <https://bio.tools/kaleidoscope> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0203,
@@ -264928,22 +273000,21 @@ K2Taxonomer is an R package built around a "top-down" recursive partitioning fra
 
 <https://bio.tools/kalign> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:name "Sequence alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:author "Erik Sonnhammer",
-        "Web Production" ;
-    sc:citation <https://doi.org/10.1186/1471-2105-6-298> ;
+        "Job Dispatcher" ;
+    sc:citation <https://doi.org/10.1093/nar/gkac240>,
+        <https://doi.org/10.1186/1471-2105-6-298> ;
     sc:description "Fast and accurate multiple sequence alignment which handles large sequences." ;
     sc:featureList edam:operation_0492 ;
-    sc:name "Kalign" ;
+    sc:name "Kalign (EBI)" ;
     sc:operatingSystem "Linux",
         "Mac",
         "Windows" ;
@@ -264953,10 +273024,10 @@ K2Taxonomer is an R package built around a "top-down" recursive partitioning fra
         <http://www.ebi.ac.uk/about/terms-of-use> ;
     sc:softwareVersion "1" ;
     sc:url "http://www.ebi.ac.uk/Tools/msa/kalign/" ;
-    biotools:primaryContact "Web Production" .
+    biotools:primaryContact "Job Dispatcher Team" .
 
 <https://bio.tools/kalign_api_ebi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1093/nar/gkn1006> ;
@@ -264971,7 +273042,7 @@ K2Taxonomer is an R package built around a "top-down" recursive partitioning fra
     sc:url "http://www.ebi.ac.uk/Tools/webservices/services/msa/kalign_rest" .
 
 <https://bio.tools/kalign_sbc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0622 ;
@@ -264986,7 +273057,7 @@ K2Taxonomer is an R package built around a "top-down" recursive partitioning fra
     biotools:primaryContact "Oliver Frings" .
 
 <https://bio.tools/kallisto> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3170,
@@ -265004,7 +273075,7 @@ K2Taxonomer is an R package built around a "top-down" recursive partitioning fra
     sc:url "https://pachterlab.github.io/kallisto/about.html" .
 
 <https://bio.tools/kaml> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2885,
@@ -265026,7 +273097,7 @@ Kinship Adjusted Multiple Loci Best Linear Unbiased Prediction.""" ;
     sc:url "https://github.com/YinLiLin/KAML" .
 
 <https://bio.tools/kanalyze> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0080,
@@ -265043,8 +273114,32 @@ Kinship Adjusted Multiple Loci Best Linear Unbiased Prediction.""" ;
     sc:url "http://vannberg.biology.gatech.edu:8080/VannbergLab/kanalyze.html" ;
     biotools:primaryContact "Dr. Fredrik Vannberg" .
 
+<https://bio.tools/kanphos> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0121,
+        edam:topic_0601,
+        edam:topic_0602,
+        edam:topic_0749,
+        edam:topic_3300 ;
+    sc:citation <https://doi.org/10.3390/CELLS11010047>,
+        "pmcid:PMC8750479",
+        "pubmed:35011609" ;
+    sc:description "A Database of Kinase-Associated Neural Protein Phosphorylation in the Brain." ;
+    sc:featureList edam:operation_0224,
+        edam:operation_0417,
+        edam:operation_0533 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "KANPHOS" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://kanphos.neuroinf.jp/" .
+
 <https://bio.tools/kantoo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0769,
@@ -265063,7 +273158,7 @@ Kinship Adjusted Multiple Loci Best Linear Unbiased Prediction.""" ;
     biotools:primaryContact "Turner Conrad" .
 
 <https://bio.tools/kapac> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_2640,
@@ -265079,7 +273174,7 @@ Kinship Adjusted Multiple Loci Best Linear Unbiased Prediction.""" ;
     biotools:primaryContact "Mihaela Zavolan" .
 
 <https://bio.tools/kappa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -265095,7 +273190,7 @@ Kinship Adjusted Multiple Loci Best Linear Unbiased Prediction.""" ;
     biotools:primaryContact "Daniel P. Matton" .
 
 <https://bio.tools/kappa-view4> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0203,
@@ -265115,7 +273210,7 @@ Kinship Adjusted Multiple Loci Best Linear Unbiased Prediction.""" ;
     biotools:primaryContact "KaPPA-View4 Support" .
 
 <https://bio.tools/karga> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0196,
@@ -265136,7 +273231,7 @@ Kinship Adjusted Multiple Loci Best Linear Unbiased Prediction.""" ;
     sc:url "https://github.com/DataIntellSystLab/KARGA" .
 
 <https://bio.tools/karma> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0203,
@@ -265151,7 +273246,7 @@ Kinship Adjusted Multiple Loci Best Linear Unbiased Prediction.""" ;
     sc:url "http://biryani.med.yale.edu/karma/cgi-bin/mysql/karma.pl" .
 
 <https://bio.tools/karyon> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0196,
@@ -265166,13 +273261,14 @@ Kinship Adjusted Multiple Loci Best Linear Unbiased Prediction.""" ;
         edam:operation_0525,
         edam:operation_3227,
         edam:operation_3644 ;
-    sc:license "MIT" ;
+    sc:license "GPL-3.0" ;
     sc:name "Karyon" ;
+    sc:softwareVersion "1.2" ;
     sc:url "https://github.com/Gabaldonlab/karyon" ;
     biotools:primaryContact "Toni Gabaldón" .
 
 <https://bio.tools/karyoploter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0622,
@@ -265193,7 +273289,7 @@ Kinship Adjusted Multiple Loci Best Linear Unbiased Prediction.""" ;
     biotools:primaryContact "Bernat Gel" .
 
 <https://bio.tools/kass> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
@@ -265216,7 +273312,7 @@ main.nf assembles KIR haplotypes from PacBio HiFi reads.""" ;
     sc:url "https://github.com/droeatumn/kass" .
 
 <https://bio.tools/kassiopeia> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -265236,7 +273332,7 @@ main.nf assembles KIR haplotypes from PacBio HiFi reads.""" ;
     biotools:primaryContact "Dr. Martin Kollmar" .
 
 <https://bio.tools/kat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0622 ;
@@ -265255,7 +273351,7 @@ main.nf assembles KIR haplotypes from PacBio HiFi reads.""" ;
     sc:url "http://www.earlham.ac.uk/kat-tools" .
 
 <https://bio.tools/kataegis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_2640,
@@ -265275,7 +273371,7 @@ main.nf assembles KIR haplotypes from PacBio HiFi reads.""" ;
     sc:url "https://github.com/flosalbizziae/kataegis" .
 
 <https://bio.tools/katk> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0625,
@@ -265298,7 +273394,7 @@ Detect genotypes from raw sequence data.""" ;
     sc:url "http://bioinfo.ut.ee/KATK/" .
 
 <https://bio.tools/kaustnmf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2640 ;
     sc:citation <https://doi.org/10.1186/1471-2105-14-107> ;
@@ -265311,7 +273407,7 @@ Detect genotypes from raw sequence data.""" ;
     sc:url "http://sfb.kaust.edu.sa/Pages/Software.aspx" .
 
 <https://bio.tools/kaviar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_3053,
@@ -265328,10 +273424,9 @@ Detect genotypes from raw sequence data.""" ;
 
 <https://bio.tools/kb-rank> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1127" ;
-            sc:name "PDB ID" ;
-            sc:sameAs "http://edamontology.org/data_1127" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1127" ;
+            sc:name "PDB ID" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3388 ;
     sc:citation <https://doi.org/10.1007/s10969-012-9125-7>,
@@ -265352,7 +273447,7 @@ Detect genotypes from raw sequence data.""" ;
     biotools:primaryContact "William McLaughlin" .
 
 <https://bio.tools/kbase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0797 ;
     sc:citation <https://doi.org/10.1016/0141-1195(89)90043-0> ;
@@ -265366,7 +273461,7 @@ Detect genotypes from raw sequence data.""" ;
     biotools:primaryContact "Contact Form" .
 
 <https://bio.tools/kbat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0622,
@@ -265384,7 +273479,7 @@ Detect genotypes from raw sequence data.""" ;
     sc:url "http://www.stat.sinica.edu.tw/hsinchou/genetics/association/KBAT.htm" .
 
 <https://bio.tools/kboost> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -265402,7 +273497,7 @@ Detect genotypes from raw sequence data.""" ;
     biotools:primaryContact <https://orcid.org/0000-0002-9110-2189> .
 
 <https://bio.tools/kbws> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1186/1751-0473-6-8> ;
@@ -265415,8 +273510,43 @@ Detect genotypes from raw sequence data.""" ;
     sc:softwareVersion "1" ;
     sc:url "http://www.g-language.org/wiki/kbws_readme" .
 
+<https://bio.tools/kc-align> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "DNA sequence" ] ;
+    bsc:output [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1383" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Nucleic acid sequence alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0102 ;
+    sc:description "A fast and accurate tool for performing codon-aware multiple sequence alignments" ;
+    sc:featureList edam:operation_0492 ;
+    sc:license "AFL-3.0" ;
+    sc:name "kc-align" ;
+    sc:softwareVersion "1.0" ;
+    sc:url "https://github.com/davebx/kc-align" .
+
+<https://bio.tools/kc-hits> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workflow" ;
+    sc:applicationSubCategory edam:topic_0769,
+        edam:topic_2840,
+        edam:topic_3292,
+        edam:topic_3343 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC189>,
+        "pubmed:35348625" ;
+    sc:description "A tool to aid in the evaluation and classification of chemical carcinogens." ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "kc-hits" ;
+    sc:operatingSystem "Windows" ;
+    sc:url "https://gitlab.com/i1650/kc-hits.git" .
+
 <https://bio.tools/kcam> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0102,
@@ -265437,7 +273567,7 @@ Detect genotypes from raw sequence data.""" ;
     biotools:primaryContact "Contact Form" .
 
 <https://bio.tools/kcmbt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0196,
@@ -265451,28 +273581,73 @@ Detect genotypes from raw sequence data.""" ;
     sc:url "https://github.com/abdullah009/kcmbt_mt" ;
     biotools:primaryContact "Abdullah-Al Mamun" .
 
+<https://bio.tools/kcnq1> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_1317,
+        edam:topic_3300,
+        edam:topic_3306,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1161/CIRCGENETICS.117.001754>,
+        "pmcid:PMC5679743",
+        "pubmed:29021305" ;
+    sc:description "Predicting the Functional Impact of KCNQ1 Variants with Artificial Neural Networks." ;
+    sc:featureList edam:operation_0331,
+        edam:operation_0480,
+        edam:operation_3092,
+        edam:operation_3927 ;
+    sc:isAccessibleForFree true ;
+    sc:name "KCNQ1" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://www.kcnq1predict.org" .
+
+<https://bio.tools/kcoss> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0084,
+        edam:topic_0196,
+        edam:topic_3174 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAB797>,
+        "pubmed:34849595" ;
+    sc:description "An ultra-fast k-mer counter for assembled genome analysis." ;
+    sc:featureList edam:operation_0525,
+        edam:operation_3211,
+        edam:operation_3472,
+        edam:operation_3695 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "KCOSS" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://github.com/kcoss-2021/KCOSS/blob/main/kmer_counter/README.md> ;
+    sc:url "https://github.com/kcoss-2021/KCOSS" .
+
 <https://bio.tools/kcsmart> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3112" ;
-            sc:name "Gene expression matrix" ;
-            sc:sameAs "http://edamontology.org/data_3112" ],
+            sc:additionalType "http://edamontology.org/data_3111" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "Processed microarray data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3111" ;
-            sc:name "Processed microarray data" ;
-            sc:sameAs "http://edamontology.org/data_3111" ] ;
+            sc:additionalType "http://edamontology.org/data_3112" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "Gene expression matrix" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1772" ;
-            sc:name "Score" ;
-            sc:sameAs "http://edamontology.org/data_1772" ],
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "Plot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2082" ;
-            sc:name "Matrix" ;
-            sc:sameAs "http://edamontology.org/data_2082" ],
+            sc:additionalType "http://edamontology.org/data_2082" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "Matrix" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1772" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "Score" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2640,
@@ -265493,7 +273668,7 @@ Detect genotypes from raw sequence data.""" ;
     biotools:primaryContact "Jorma de Ronde" .
 
 <https://bio.tools/kd-klnmf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_3047 ;
@@ -265508,7 +273683,7 @@ Long non-coding RNAs (lncRNAs) refer to functional RNA molecules with a length m
     sc:url "https://github.com/HuijuanQiao/KD-KLNMF" .
 
 <https://bio.tools/kd4v> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0625,
@@ -265529,7 +273704,7 @@ Long non-coding RNAs (lncRNAs) refer to functional RNA molecules with a length m
     biotools:primaryContact "Contact Form" .
 
 <https://bio.tools/kddn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -265547,7 +273722,7 @@ Long non-coding RNAs (lncRNAs) refer to functional RNA molecules with a length m
     sc:url "http://apps.cytoscape.org/apps/kddn" .
 
 <https://bio.tools/kdetrees> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0084,
@@ -265565,7 +273740,7 @@ Long non-coding RNAs (lncRNAs) refer to functional RNA molecules with a length m
     biotools:primaryContact "Grady Weyenberg" .
 
 <https://bio.tools/kea> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0128,
@@ -265584,7 +273759,7 @@ Long non-coding RNAs (lncRNAs) refer to functional RNA molecules with a length m
     biotools:primaryContact "Avi Ma’ayan" .
 
 <https://bio.tools/keanu> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0637,
         edam:topic_3050,
@@ -265605,7 +273780,7 @@ The following command is used to create the taxonomy.dat and merged_deleted.dat
     sc:url "https://github.com/IGBB/keanu" .
 
 <https://bio.tools/kebabs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -265626,7 +273801,7 @@ The following command is used to create the taxonomy.dat and merged_deleted.dat
     biotools:primaryContact <http://orcid.org/0000-0001-6859-8828> .
 
 <https://bio.tools/kec> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0154,
@@ -265648,7 +273823,7 @@ The following command is used to create the taxonomy.dat and merged_deleted.dat
     biotools:primaryContact "Pavel Beran" .
 
 <https://bio.tools/keeseek> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654 ;
@@ -265664,7 +273839,7 @@ The following command is used to create the taxonomy.dat and merged_deleted.dat
     biotools:primaryContact "Stefano Toppo" .
 
 <https://bio.tools/kegarray> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -265680,7 +273855,7 @@ The following command is used to create the taxonomy.dat and merged_deleted.dat
     sc:url "http://www.genome.jp/kegg/expression/" .
 
 <https://bio.tools/kegdraw> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1093/glycob/cwj010> ;
@@ -265694,16 +273869,24 @@ The following command is used to create the taxonomy.dat and merged_deleted.dat
     sc:url "http://www.kegg.jp/kegg/download/kegtools.html" .
 
 <https://bio.tools/kegg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0128,
         edam:topic_0602,
         edam:topic_0621,
         edam:topic_3407 ;
-    sc:citation "pubmed:12539951",
-        "pubmed:18077471",
+    sc:citation <https://doi.org/10.1002/pro.3715>,
+        <https://doi.org/10.1093/nar/28.1.27>,
+        <https://doi.org/10.1093/nar/gkaa970>,
+        "pmcid:PMC102409",
+        "pmcid:PMC6798127",
+        "pmcid:PMC7779016",
+        "pubmed:10592173",
+        "pubmed:12539951",
         "pubmed:18477636",
+        "pubmed:31441146",
+        "pubmed:33125081",
         "pubmed:9847135" ;
     sc:description "Pathway maps, molecular catalogs, genome maps and gene catalogs that capture knowledge about interactions in terms of information pathways. This tool comprises several databases, including BRITE (protein-protein interactions), PATHWAY (interaction networks for cellular processes), and LIGAND (chemical compounds and chemical reactions). Its Atlas is a new tool for the global analysis of metabolic pathways." ;
     sc:featureList edam:operation_0533,
@@ -265721,14 +273904,14 @@ The following command is used to create the taxonomy.dat and merged_deleted.dat
 
 <https://bio.tools/kegganim> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3108" ;
-            sc:name "Experimental measurement" ;
-            sc:sameAs "http://edamontology.org/data_3108" ] ;
+            sc:additionalType "http://edamontology.org/data_3108" ;
+            sc:encodingFormat "http://edamontology.org/format_3167" ;
+            sc:name "Experimental measurement" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Image" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0092,
@@ -265753,17 +273936,18 @@ The following command is used to create the taxonomy.dat and merged_deleted.dat
 
 <https://bio.tools/keggcharter> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0907" ;
-            sc:name "Protein family report" ;
-            sc:sameAs "http://edamontology.org/data_0907" ] ;
+            sc:additionalType "http://edamontology.org/data_0907" ;
+            sc:encodingFormat "http://edamontology.org/format_3620" ;
+            sc:name "Protein family report" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2984" ;
-            sc:name "Pathway or network report" ;
-            sc:sameAs "http://edamontology.org/data_2984" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2984" ;
+            sc:encodingFormat "http://edamontology.org/format_3603" ;
+            sc:name "Pathway or network report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0085 ;
     sc:author <http://orcid.org/0000-0002-2691-9950> ;
+    sc:citation <https://doi.org/10.1016/j.csbj.2022.03.042> ;
     sc:description "A tool for representing genomic potential and transcriptomic expression into KEGG pathways." ;
     sc:featureList edam:operation_3925 ;
     sc:isAccessibleForFree true ;
@@ -265772,11 +273956,11 @@ The following command is used to create the taxonomy.dat and merged_deleted.dat
     sc:operatingSystem "Linux",
         "Mac" ;
     sc:softwareHelp <https://github.com/iquasere/KEGGCharter#readme> ;
-    sc:softwareVersion "0.2.3" ;
+    sc:softwareVersion "0.3.4" ;
     sc:url "https://github.com/iquasere/KEGGCharter" .
 
 <https://bio.tools/kegggraph> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -265798,7 +273982,7 @@ The following command is used to create the taxonomy.dat and merged_deleted.dat
     biotools:primaryContact "Jitao David Zhang" .
 
 <https://bio.tools/kegglincs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0102,
@@ -265817,7 +274001,7 @@ The following command is used to create the taxonomy.dat and merged_deleted.dat
     biotools:primaryContact "Shana White" .
 
 <https://bio.tools/keggorthology> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -265836,7 +274020,7 @@ The following command is used to create the taxonomy.dat and merged_deleted.dat
     biotools:primaryContact "VJ Carey" .
 
 <https://bio.tools/keggparser> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -265854,7 +274038,7 @@ The following command is used to create the taxonomy.dat and merged_deleted.dat
     sc:url "http://www.mathworks.com/matlabcentral/fileexchange/37561" .
 
 <https://bio.tools/keggprofile> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0602 ;
@@ -265874,22 +274058,22 @@ The following command is used to create the taxonomy.dat and merged_deleted.dat
 
 <https://bio.tools/keggrest> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0842" ;
-            sc:name "Identifier" ;
-            sc:sameAs "http://edamontology.org/data_0842" ],
+            sc:additionalType "http://edamontology.org/data_0968" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Keyword" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0968" ;
-            sc:name "Keyword" ;
-            sc:sameAs "http://edamontology.org/data_0968" ] ;
+            sc:additionalType "http://edamontology.org/data_0842" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Identifier" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2080" ;
-            sc:name "Database search results" ;
-            sc:sameAs "http://edamontology.org/data_2080" ],
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Image" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2080" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Database search results" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0091 ;
@@ -265908,7 +274092,7 @@ The following command is used to create the taxonomy.dat and merged_deleted.dat
     biotools:primaryContact "BioConductor Package Maintainer" .
 
 <https://bio.tools/keggtranslator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3071 ;
@@ -265923,7 +274107,7 @@ The following command is used to create the taxonomy.dat and merged_deleted.dat
     sc:url "http://www.ra.cs.uni-tuebingen.de/software/KEGGtranslator/index.htm" .
 
 <https://bio.tools/keller> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0602,
@@ -265939,8 +274123,32 @@ The following command is used to create the taxonomy.dat and merged_deleted.dat
     sc:url "http://www.sailing.cs.cmu.edu/main/?page_id=430" ;
     biotools:primaryContact "Eric P. Xing" .
 
+<https://bio.tools/kemet> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0160,
+        edam:topic_0602,
+        edam:topic_3174,
+        edam:topic_3407,
+        edam:topic_3697 ;
+    sc:citation <https://doi.org/10.1016/J.CSBJ.2022.03.015>,
+        "pmcid:PMC8976094",
+        "pubmed:35422973" ;
+    sc:description "A python tool for KEGG Module evaluation and microbial genome annotation expansion." ;
+    sc:featureList edam:operation_0310,
+        edam:operation_0362,
+        edam:operation_3660,
+        edam:operation_3929 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "KEMET" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/Matteopaluh/KEMET" .
+
 <https://bio.tools/kera> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0203,
@@ -265960,7 +274168,7 @@ KERA (Kinetic Event Resolving Algorithm) is a tool for analyzing data which cons
     sc:url "https://github.com/MSpiesLab/KERA" .
 
 <https://bio.tools/keras_dna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0621,
@@ -265980,7 +274188,7 @@ Keras_dna is an API that helps quick experimentation in applying deep learning t
     sc:url "https://github.com/etirouthier/keras_dna.git" .
 
 <https://bio.tools/keras_r-cnn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0634,
@@ -265998,7 +274206,7 @@ keras-rcnn is the Keras package for region-based convolutional neural networks."
     sc:url "https://github.com/broadinstitute/keras-rcnn" .
 
 <https://bio.tools/ketcher-rails> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0154,
@@ -266017,7 +274225,7 @@ keras-rcnn is the Keras package for region-based convolutional neural networks."
     biotools:primaryContact "Stefan Bräse" .
 
 <https://bio.tools/ketoadvanced> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description """We researched, and here you will learn who makes Keto Advanced 1500 and the best way to get the quality product you deserve. These are the real facts made by the company and the owner of the Keto Advanced 1500.
 
 https://www.bignewsnetwork.com/news/270897667/keto-1500massive-weight-loss-technique
@@ -266030,18 +274238,15 @@ https://www.kemovebbs.com/Thread-Keto-Advanced-1500-Updated-October-2021-Shark-T
 
 <https://bio.tools/key_pathway_miner> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ],
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:name "Gene expression data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Gene expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ] ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:name "Pathway or network" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:name "Pathway or network" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_2259,
@@ -266063,7 +274268,7 @@ https://www.kemovebbs.com/Thread-Keto-Advanced-1500-Updated-October-2021-Shark-T
     biotools:primaryContact "Jan Baumbach" .
 
 <https://bio.tools/keyboard> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0209,
         edam:topic_2640,
@@ -266078,19 +274283,8 @@ https://www.kemovebbs.com/Thread-Keto-Advanced-1500-Updated-October-2021-Shark-T
     sc:url "https://cran.r-project.org/package=Keyboard" ;
     biotools:primaryContact "Chen Li" .
 
-<https://bio.tools/keyminer> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0659,
-        edam:topic_3170,
-        edam:topic_3512 ;
-    sc:citation <https://doi.org/10.1101/784819> ;
-    sc:description "> LOW CONFIDENCE! | > COMMON LINK WITH (PUB. & NAME DIFFERENT) bio.tools/RECIST_1.1 (PYTHONANYWHERE.COM), bio.tools/iPro70-FMWin (PYTHONANYWHERE.COM), bio.tools/camels (PYTHONANYWHERE.COM) | > CORRECT NAME OF TOOL COULD ALSO BE 'spatiotemporal-specific', 'NMTSI' | Analysis of spatiotemporal specificity of small RNAs regulating hPSC differentiation and beyond | We provide a search engine to retrieve detailed information of small RNA. For reference, please cite the following paper: | Li, L., Miu, K. K., Gu, S., Cheung, H. H. & Chan, W. Y. Comparison of multi-lineage differentiation of hiPSCs reveals novel miRNAs that regulate lineage specification. Sci Rep 8, 9630, doi:10.1038/s41598-018-27719-0 (2018) | contact: lli172@usc.edu, jinfeng@megagon.ai" ;
-    sc:featureList edam:operation_3501,
-        edam:operation_3792 ;
-    sc:name "keyminer" ;
-    sc:url "https://keyminer.pythonanywhere.com/km/" .
-
 <https://bio.tools/kfc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0128,
@@ -266115,7 +274309,7 @@ https://www.kemovebbs.com/Thread-Keto-Advanced-1500-Updated-October-2021-Shark-T
     sc:url "https://mitchell-lab.biochem.wisc.edu/KFC_Server/index.php" .
 
 <https://bio.tools/kfits> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
@@ -266135,7 +274329,7 @@ https://www.kemovebbs.com/Thread-Keto-Advanced-1500-Updated-October-2021-Shark-T
     biotools:primaryContact "Dana Reichmann" .
 
 <https://bio.tools/kg-covid-19> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3305,
@@ -266152,7 +274346,7 @@ The KG-COVID-19 project is the first instantiation of such a KG Hub. Thus, KG-CO
     sc:url "https://github.com/Knowledge-Graph-Hub/kg-covid-19/wiki" .
 
 <https://bio.tools/kg4sl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -266171,7 +274365,7 @@ The KG-COVID-19 project is the first instantiation of such a KG Hub. Thus, KG-CO
     sc:url "https://github.com/JieZheng-ShanghaiTech/KG4SL" .
 
 <https://bio.tools/kgcn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0209,
@@ -266189,7 +274383,7 @@ kGCN: a graph-based deep learning framework for life science.""" ;
     sc:url "https://github.com/clinfo/kGCN" .
 
 <https://bio.tools/kgem> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3053,
         edam:topic_3168 ;
@@ -266204,8 +274398,32 @@ kGCN: a graph-based deep learning framework for life science.""" ;
     sc:softwareVersion "0.3.1" ;
     sc:url "http://alan.cs.gsu.edu/NGS/?q=content/kgem" .
 
+<https://bio.tools/kgev> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0089,
+        edam:topic_0602,
+        edam:topic_0625,
+        edam:topic_3068,
+        edam:topic_3473 ;
+    sc:citation <https://doi.org/10.1186/S12911-022-01848-Z>,
+        "pmcid:PMC9161770",
+        "pubmed:35655307" ;
+    sc:description "Expediting knowledge acquisition by a web framework for Knowledge Graph Exploration and Visualization (KGEV)." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_2421,
+        edam:operation_2422,
+        edam:operation_3625 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "KGEV" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/WGLab/kgev-neo4j" .
+
 <https://bio.tools/kgg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3053,
@@ -266222,7 +274440,7 @@ kGCN: a graph-based deep learning framework for life science.""" ;
     biotools:primaryContact "Dr Li, Miaoxin" .
 
 <https://bio.tools/kggseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0634,
@@ -266239,18 +274457,18 @@ kGCN: a graph-based deep learning framework for life science.""" ;
 
 <https://bio.tools/khmer> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3497" ;
-            sc:name "DNA sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_3497" ],
+            sc:additionalType "http://edamontology.org/data_3497" ;
+            sc:encodingFormat "http://edamontology.org/format_2182" ;
+            sc:name "DNA sequence (raw)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3497" ;
-            sc:name "DNA sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_3497" ] ;
+            sc:additionalType "http://edamontology.org/data_3497" ;
+            sc:encodingFormat "http://edamontology.org/format_2182" ;
+            sc:name "DNA sequence (raw)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3497" ;
-            sc:name "DNA sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_3497" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3497" ;
+            sc:encodingFormat "http://edamontology.org/format_2182" ;
+            sc:name "DNA sequence (raw)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196 ;
     sc:citation <https://doi.org/10.1073/pnas.1121464109>,
@@ -266277,7 +274495,7 @@ kGCN: a graph-based deep learning framework for life science.""" ;
         "khmer-project@idyll.org" .
 
 <https://bio.tools/kibio> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Workbench" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -266297,7 +274515,7 @@ kGCN: a graph-based deep learning framework for life science.""" ;
     biotools:primaryContact <https://orcid.org/0000-0001-7922-790X> .
 
 <https://bio.tools/kic> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3071,
         edam:topic_3168,
@@ -266315,8 +274533,21 @@ kGCN: a graph-based deep learning framework for life science.""" ;
     biotools:primaryContact "Khyati Patel",
         "YetingZhang" .
 
+<https://bio.tools/kidoq> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:description "KiDoQ, a web server has been developed to serve scientific community working in the field of designing inhibitors against Dihydrodipicolinate synthase (DHDPS), a potential drug target enzyme of a unique bacterial DAP/Lysine pathway." ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "kidoq" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/kidoq/index.html> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/kidoq/index.html" .
+
 <https://bio.tools/kimi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0196,
@@ -266335,7 +274566,7 @@ KIMI: R package based on Knockoff Inference for Motif Identification from molecu
     sc:url "https://github.com/xinbaiusc/KIMI" .
 
 <https://bio.tools/kimod> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3071,
@@ -266354,7 +274585,7 @@ KIMI: R package based on Knockoff Inference for Motif Identification from molecu
     biotools:primaryContact "M L Zingaretti" .
 
 <https://bio.tools/kimono> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0128,
@@ -266372,8 +274603,31 @@ KiMONo is a network inference tool for multi-omics datasets. The multi-omics net
     sc:name "KiMONo" ;
     sc:url "https://github.com/cellmapslab/kimono" .
 
+<https://bio.tools/kimopack> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0769,
+        edam:topic_3068 ;
+    sc:citation <https://doi.org/10.1021/ACS.JPCA.2C00907>,
+        "pmcid:PMC9251768",
+        "pubmed:35700393" ;
+    sc:description "A python Package for Kinetic Modeling of the Chemical Mechanism." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3219,
+        edam:operation_3435 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "KiMoPack" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://kimopack.readthedocs.io/en/latest/>,
+        <https://www.youtube.com/channel/UCmhiK0P9wXXjs_PJaitx8BQ> ;
+    sc:url "https://pypi.org/project/KiMoPack/" .
+
 <https://bio.tools/kimosys> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_2259,
         edam:topic_3375,
@@ -266393,7 +274647,7 @@ KiMONo is a network inference tool for multi-omics datasets. The multi-omics net
     biotools:primaryContact "Contact form" .
 
 <https://bio.tools/kinact> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0130,
         edam:topic_0199,
@@ -266410,7 +274664,7 @@ KiMONo is a network inference tool for multi-omics datasets. The multi-omics net
         "Dr. Douglas E. V. Pires" .
 
 <https://bio.tools/kinafrag> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
@@ -266429,7 +274683,7 @@ KiMONo is a network inference tool for multi-omics datasets. The multi-omics net
         "Guang-Fu Yang" .
 
 <https://bio.tools/kinari-web> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0123,
@@ -266451,14 +274705,13 @@ KiMONo is a network inference tool for multi-omics datasets. The multi-omics net
 
 <https://bio.tools/kinase_sarfari_blast_search> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0857" ;
-            sc:name "Sequence search results" ;
-            sc:sameAs "http://edamontology.org/data_0857" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0857" ;
+            sc:name "Sequence search results" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:author "ChEMBL Team" ;
@@ -266478,14 +274731,12 @@ KiMONo is a network inference tool for multi-omics datasets. The multi-omics net
 
 <https://bio.tools/kinase_sarfari_small_molecule_search> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3490" ;
-            sc:name "Chemical structure sketch" ;
-            sc:sameAs "http://edamontology.org/data_3490" ] ;
+            sc:additionalType "http://edamontology.org/data_3490" ;
+            sc:name "Chemical structure sketch" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0962" ;
-            sc:name "Small molecule report" ;
-            sc:sameAs "http://edamontology.org/data_0962" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0962" ;
+            sc:name "Small molecule report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154 ;
     sc:author "ChEMBL Team" ;
@@ -266504,7 +274755,7 @@ KiMONo is a network inference tool for multi-omics datasets. The multi-omics net
     biotools:primaryContact "Mark Davies" .
 
 <https://bio.tools/kinasemd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0199,
@@ -266522,7 +274773,7 @@ Mutations in kinases are abundant and critical to study signaling pathways and r
     sc:url "https://bioinfo.uth.edu/kmd/" .
 
 <https://bio.tools/kinasephos> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -266544,7 +274795,7 @@ Mutations in kinases are abundant and critical to study signaling pathways and r
     biotools:primaryContact "KinasePhos Support" .
 
 <https://bio.tools/kinasepkipred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0202,
@@ -266568,7 +274819,7 @@ Set up the conda environment and activate it.""" ;
     sc:url "https://github.com/sirimullalab/KinasepKipred" .
 
 <https://bio.tools/kincohort> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3053 ;
@@ -266584,7 +274835,7 @@ Set up the conda environment and activate it.""" ;
     biotools:primaryContact "Nilanjan Chatterjee" .
 
 <https://bio.tools/kincore> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0166,
@@ -266606,10 +274857,10 @@ Use the following command to create a virtual enviroment and install the necessa
 
 <https://bio.tools/kincsm> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2301" ;
-            sc:name "SMILES string" ;
-            sc:sameAs "http://edamontology.org/data_2301" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2301" ;
+            sc:encodingFormat "http://edamontology.org/format_1196" ;
+            sc:name "SMILES string" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0602,
@@ -266631,8 +274882,27 @@ Use the following command to create a virtual enviroment and install the necessa
         "Windows" ;
     sc:url "http://biosig.unimelb.edu.au/kin_csm/" .
 
+<https://bio.tools/kinderminer_web> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0218,
+        edam:topic_0749,
+        edam:topic_2229 ;
+    sc:citation <https://doi.org/10.12688/F1000RESEARCH.25523.2>,
+        "pmcid:PMC8756297",
+        "pubmed:35083039" ;
+    sc:description "A simple web tool for ranking pairwise associations in biomedical applications." ;
+    sc:featureList edam:operation_0306 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "KinderMiner web" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://www.kinderminer.org" .
+
 <https://bio.tools/kindisperse> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_0621,
@@ -266650,7 +274920,7 @@ Use the following command to create a virtual enviroment and install the necessa
     sc:url "https://github.com/moshejasper/kindisperse" .
 
 <https://bio.tools/kindock> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0081,
@@ -266667,7 +274937,7 @@ Use the following command to create a virtual enviroment and install the necessa
     sc:url "http://abcis.cbs.cnrs.fr/kindock/" .
 
 <https://bio.tools/kinefold> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0082,
@@ -266687,7 +274957,7 @@ Use the following command to create a virtual enviroment and install the necessa
     biotools:primaryContact "Contact form" .
 
 <https://bio.tools/kinfer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2259,
         edam:topic_3314,
@@ -266703,7 +274973,7 @@ Use the following command to create a virtual enviroment and install the necessa
     sc:url "http://www.cosbi.eu/research/prototypes/kinfer" .
 
 <https://bio.tools/kinfitr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3375,
@@ -266717,7 +274987,7 @@ Use the following command to create a virtual enviroment and install the necessa
     sc:url "https://github.com/mathesong/kinfitr" .
 
 <https://bio.tools/kinfraglib> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0196,
@@ -266741,14 +275011,13 @@ We present here KinFragLib, a data-driven kinase-focused fragment library based
 
 <https://bio.tools/kingfisher> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2091" ;
-            sc:name "Accession" ;
-            sc:sameAs "http://edamontology.org/data_2091" ] ;
+            sc:additionalType "http://edamontology.org/data_2091" ;
+            sc:name "Accession" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:encodingFormat "http://edamontology.org/format_3698" ;
+            sc:name "Nucleic acid sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0077 ;
     sc:description "Easier download/extract of FASTA/Q read data and metadata from the ENA, NCBI, AWS or GCP." ;
     sc:featureList edam:operation_0349,
@@ -266761,7 +275030,7 @@ We present here KinFragLib, a data-driven kinase-focused fragment library based
     sc:url "https://github.com/wwood/kingfisher-download" .
 
 <https://bio.tools/kinimmerse> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_2275 ;
     sc:description "KinImmerse translates the molecular capabilities of the kinemage graphics format into software for display and manipulation in the DiVE (Duke immersive Virtual Environment) or other VR system. KinImmerse is supported by the flexible display construction and editing features in the KiNG kinemage viewer and it implements new forms of user interaction in the DiVE." ;
@@ -266774,7 +275043,7 @@ We present here KinFragLib, a data-driven kinase-focused fragment library based
     sc:url "http://kinemage.biochem.duke.edu/software/kinimmerse.php" .
 
 <https://bio.tools/kininfor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3053 ;
@@ -266791,7 +275060,7 @@ We present here KinFragLib, a data-driven kinase-focused fragment library based
     biotools:primaryContact "JinliangWang" .
 
 <https://bio.tools/kinmap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0623,
@@ -266812,7 +275081,7 @@ We present here KinFragLib, a data-driven kinase-focused fragment library based
     biotools:primaryContact "Support" .
 
 <https://bio.tools/kinmutrf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0821,
@@ -266833,7 +275102,7 @@ We present here KinFragLib, a data-driven kinase-focused fragment library based
     biotools:primaryContact "Miguel vazquez" .
 
 <https://bio.tools/kinortho> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0623,
@@ -266851,7 +275120,7 @@ We present here KinFragLib, a data-driven kinase-focused fragment library based
     biotools:primaryContact <https://orcid.org/0000-0002-2833-8375> .
 
 <https://bio.tools/kinpred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0089,
@@ -266874,7 +275143,7 @@ Users of KinPred-formatted Prediction Algorithm Resources.""" ;
     sc:url "https://figshare.com/projects/KinPred_v1_0/86885" .
 
 <https://bio.tools/kinwalker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0099,
@@ -266888,7 +275157,7 @@ Users of KinPred-formatted Prediction Algorithm Resources.""" ;
     sc:url "http://www.bioinf.uni-leipzig.de/Software/Kinwalker/" .
 
 <https://bio.tools/kipar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2259 ;
@@ -266904,7 +275173,7 @@ Users of KinPred-formatted Prediction Algorithm Resources.""" ;
     sc:url "http://www.mcisb.org/resources/kipar/index.html" .
 
 <https://bio.tools/kipes> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0623,
         edam:topic_3293 ;
     sc:author "Boas Pucker" ;
@@ -266918,7 +275187,7 @@ Users of KinPred-formatted Prediction Algorithm Resources.""" ;
     biotools:primaryContact "Boas Pucker" .
 
 <https://bio.tools/kipper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3071 ;
@@ -266932,7 +275201,7 @@ Users of KinPred-formatted Prediction Algorithm Resources.""" ;
     sc:url "https://github.com/Public-Health-Bioinformatics/kipper" .
 
 <https://bio.tools/kismeth> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_3173,
         edam:topic_3295 ;
@@ -266947,7 +275216,7 @@ Users of KinPred-formatted Prediction Algorithm Resources.""" ;
     biotools:primaryContact "Kismeth Support" .
 
 <https://bio.tools/kissde> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3175,
@@ -266967,27 +275236,58 @@ Users of KinPred-formatted Prediction Algorithm Resources.""" ;
     sc:url "http://bioconductor.org/packages/release/bioc/html/kissDE.html" ;
     biotools:primaryContact "Aurélie Siberchicot" .
 
+<https://bio.tools/kissim> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0080,
+        edam:topic_0082,
+        edam:topic_0154,
+        edam:topic_0160 ;
+    sc:citation <https://doi.org/10.1021/ACS.JCIM.2C00050>,
+        "pubmed:35536589" ;
+    sc:description "Predicting Off-Targets from Structural Similarities in the Kinome." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_0475,
+        edam:operation_2929 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "KiSSim" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://kissim.readthedocs.io/en/latest/index.html> ;
+    sc:url "https://github.com/volkamerlab/kissim" .
+
 <https://bio.tools/kit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
-    sc:additionalType "Desktop application" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Desktop application",
+        "Library" ;
     sc:applicationSubCategory edam:topic_2229,
+        edam:topic_3382,
         edam:topic_3383 ;
-    sc:citation <https://doi.org/10.1093/bioinformatics/btw087>,
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC330>,
+        <https://doi.org/10.1093/bioinformatics/btw087>,
         "pmcid:PMC4908324",
-        "pubmed:27153705" ;
+        "pmcid:PMC9191203",
+        "pubmed:27153705",
+        "pubmed:35579370" ;
     sc:description "Kinetochore Tracking (KiT) is an open-source software package for tracking kinetochores from live-cell fluorescent movies." ;
-    sc:featureList edam:operation_3443 ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3443,
+        edam:operation_3799,
+        edam:operation_3935 ;
+    sc:isAccessibleForFree true ;
     sc:license "GPL-3.0" ;
     sc:name "KiT" ;
     sc:operatingSystem "Linux",
         "Mac",
         "Windows" ;
     sc:softwareHelp <https://bitbucket.org/jarmond/kit/src/59396b209c83fbc712bd03de0e54bbc2f07204fc/KiT%20User%20Manual.pdf?at=master&fileviewer=file-view-default> ;
-    sc:url "https://bitbucket.org/jarmond/kit/overview" ;
+    sc:url "https://github.com/cmcb-warwick/KiT" ;
     biotools:primaryContact <http://orcid.org/0000-0001-5146-0910> .
 
 <https://bio.tools/kitsune> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0194,
         edam:topic_0196,
@@ -267011,8 +275311,24 @@ KITSUNE is a toolkit for evaluation of the length of k-mer in a given genome dat
     sc:name "KITSUNE" ;
     sc:url "https://github.com/natapol/kitsune" .
 
+<https://bio.tools/kiu-net> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_3382 ;
+    sc:citation <https://doi.org/10.1109/TMI.2021.3130469>,
+        "pubmed:34813472" ;
+    sc:description "Overcomplete Convolutional Architectures for Biomedical Image and Volumetric Segmentation." ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "KiU-Net" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/jeya-maria-jose/KiU-Net-pytorch" .
+
 <https://bio.tools/kiwi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0602,
@@ -267032,7 +275348,7 @@ KITSUNE is a toolkit for evaluation of the length of k-mer in a given genome dat
     biotools:primaryContact "Support" .
 
 <https://bio.tools/kiwifruit_genome_database> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
@@ -267055,7 +275371,7 @@ KITSUNE is a toolkit for evaluation of the length of k-mer in a given genome dat
     sc:url "http://kiwifruitgenome.org/" .
 
 <https://bio.tools/klab-pcr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3308,
         edam:topic_3519 ;
@@ -267069,7 +275385,7 @@ KITSUNE is a toolkit for evaluation of the length of k-mer in a given genome dat
     biotools:primaryContact "Stephen A.Krawetz" .
 
 <https://bio.tools/klarigi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0625,
@@ -267089,7 +275405,7 @@ KITSUNE is a toolkit for evaluation of the length of k-mer in a given genome dat
     sc:url "http://github.com/reality/klarigi" .
 
 <https://bio.tools/kldm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3174,
@@ -267107,7 +275423,7 @@ kLDM is designed to infer multiple association networks based on variation of en
     sc:url "https://github.com/tinglab/kLDM.git" .
 
 <https://bio.tools/kleborate> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3174,
@@ -267128,7 +275444,7 @@ A manuscript describing the Kleborate software in full is currently in preparati
     sc:url "https://github.com/katholt/Kleborate" .
 
 <https://bio.tools/klebsiella_maldi_typer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3301,
         edam:topic_3305,
@@ -267144,7 +275460,7 @@ A manuscript describing the Kleborate software in full is currently in preparati
     sc:url "https://maldityper.pasteur.fr" .
 
 <https://bio.tools/klic> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3172,
@@ -267165,90 +275481,71 @@ The code contained in this folder can be used to reproduce the pancancer analysi
 
 <https://bio.tools/klifs> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ],
+            sc:additionalType "http://edamontology.org/data_2886" ;
+            sc:encodingFormat "http://edamontology.org/format_2554" ;
+            sc:name "Protein sequence record" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2886" ;
-            sc:name "Protein sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2886" ] ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein structure" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1712" ;
-            sc:name "Chemical structure image" ;
-            sc:sameAs "http://edamontology.org/data_1712" ],
+            sc:additionalType "http://edamontology.org/data_0954" ;
+            sc:name "Database cross-mapping" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0906" ;
-            sc:name "Protein interaction report" ;
-            sc:sameAs "http://edamontology.org/data_0906" ],
+            sc:additionalType "http://edamontology.org/data_0982" ;
+            sc:name "Molecule identifier" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0982" ;
-            sc:name "Molecule identifier" ;
-            sc:sameAs "http://edamontology.org/data_0982" ],
+            sc:additionalType "http://edamontology.org/data_1498" ;
+            sc:name "Tanimoto similarity score" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2050" ;
-            sc:name "Molecular property (general)" ;
-            sc:sameAs "http://edamontology.org/data_2050" ],
+            sc:additionalType "http://edamontology.org/data_2526" ;
+            sc:name "Text data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2992" ;
-            sc:name "Protein structure image" ;
-            sc:sameAs "http://edamontology.org/data_2992" ],
+            sc:additionalType "http://edamontology.org/data_0893" ;
+            sc:name "Sequence-structure alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0890" ;
-            sc:name "Structural (3D) profile alignment" ;
-            sc:sameAs "http://edamontology.org/data_0890" ],
+            sc:additionalType "http://edamontology.org/data_0888" ;
+            sc:name "Structure similarity score" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0889" ;
-            sc:name "Structural profile" ;
-            sc:sameAs "http://edamontology.org/data_0889" ],
+            sc:additionalType "http://edamontology.org/data_0984" ;
+            sc:name "Molecule name" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2526" ;
-            sc:name "Text data" ;
-            sc:sameAs "http://edamontology.org/data_2526" ],
+            sc:additionalType "http://edamontology.org/data_1537" ;
+            sc:name "Protein structure report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2080" ;
-            sc:name "Database search results" ;
-            sc:sameAs "http://edamontology.org/data_2080" ],
+            sc:additionalType "http://edamontology.org/data_2992" ;
+            sc:name "Protein structure image" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0954" ;
-            sc:name "Database cross-mapping" ;
-            sc:sameAs "http://edamontology.org/data_0954" ],
+            sc:additionalType "http://edamontology.org/data_2080" ;
+            sc:name "Database search results" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1461" ;
-            sc:name "Protein-ligand complex" ;
-            sc:sameAs "http://edamontology.org/data_1461" ],
+            sc:additionalType "http://edamontology.org/data_0897" ;
+            sc:name "Protein property" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0897" ;
-            sc:name "Protein property" ;
-            sc:sameAs "http://edamontology.org/data_0897" ],
+            sc:additionalType "http://edamontology.org/data_0906" ;
+            sc:name "Protein interaction report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1498" ;
-            sc:name "Tanimoto similarity score" ;
-            sc:sameAs "http://edamontology.org/data_1498" ],
+            sc:additionalType "http://edamontology.org/data_1712" ;
+            sc:name "Chemical structure image" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0984" ;
-            sc:name "Molecule name" ;
-            sc:sameAs "http://edamontology.org/data_0984" ],
+            sc:additionalType "http://edamontology.org/data_1461" ;
+            sc:name "Protein-ligand complex" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0893" ;
-            sc:name "Sequence-structure alignment" ;
-            sc:sameAs "http://edamontology.org/data_0893" ],
+            sc:additionalType "http://edamontology.org/data_2050" ;
+            sc:name "Molecular property (general)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0888" ;
-            sc:name "Structure similarity score" ;
-            sc:sameAs "http://edamontology.org/data_0888" ],
+            sc:additionalType "http://edamontology.org/data_0889" ;
+            sc:name "Structural profile" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1537" ;
-            sc:name "Protein structure report" ;
-            sc:sameAs "http://edamontology.org/data_1537" ],
+            sc:additionalType "http://edamontology.org/data_1463" ;
+            sc:name "Small molecule structure" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1481" ;
-            sc:name "Structure alignment (protein)" ;
-            sc:sameAs "http://edamontology.org/data_1481" ],
+            sc:additionalType "http://edamontology.org/data_0890" ;
+            sc:name "Structural (3D) profile alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1463" ;
-            sc:name "Small molecule structure" ;
-            sc:sameAs "http://edamontology.org/data_1463" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1481" ;
+            sc:name "Structure alignment (protein)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web API",
         "Web application" ;
@@ -267298,12 +275595,12 @@ The code contained in this folder can be used to reproduce the pancancer analysi
         "Windows" ;
     sc:softwareHelp <https://klifs.net/faq.php>,
         <https://klifs.net/swagger> ;
-    sc:softwareVersion "3.0" ;
+    sc:softwareVersion "3.2" ;
     sc:url "https://klifs.net" ;
     biotools:primaryContact <https://orcid.org/0000-0001-5514-6021> .
 
 <https://bio.tools/km2gcn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -267321,8 +275618,51 @@ The code contained in this folder can be used to reproduce the pancancer analysi
     sc:url "https://github.com/juanbot/km2gcn" ;
     biotools:primaryContact "Juan A. Botía" .
 
+<https://bio.tools/kma> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "DNA sequence" ] ;
+    bsc:output [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1383" ;
+            sc:encodingFormat "http://edamontology.org/format_1984" ;
+            sc:name "Nucleic acid sequence alignment" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_3917" ;
+            sc:encodingFormat "http://edamontology.org/format_1915" ;
+            sc:name "Count matrix" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_0858" ;
+            sc:encodingFormat "http://edamontology.org/format_1915" ;
+            sc:name "Sequence signature matches" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2019" ;
+            sc:encodingFormat "http://edamontology.org/format_1915" ;
+            sc:name "Map data" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0080 ;
+    sc:citation <https://doi.org/10.1186/s12859-018-2336-6>,
+        "pmcid:PMC6116485",
+        "pubmed:30157759" ;
+    sc:description "KMA is mapping a method designed to map raw reads directly against redundant databases, in an ultra-fast manner using seed and extend." ;
+    sc:featureList edam:operation_3198 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Apache-2.0" ;
+    sc:name "KMA" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://bitbucket.org/genomicepidemiology/kma/src/master/README.md> ;
+    sc:softwareVersion "1.4.0" ;
+    sc:url "https://bitbucket.org/genomicepidemiology/kma/src/master/" .
+
 <https://bio.tools/kmacs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -267336,7 +275676,7 @@ The code contained in this folder can be used to reproduce the pancancer analysi
     sc:url "http://kmacs.gobics.de/" .
 
 <https://bio.tools/kmap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0602,
@@ -267362,7 +275702,7 @@ KAUST Metagenomic Analysis Platform.""" ;
     sc:url "http://www.cbrc.kaust.edu.sa/kmapBLAST/" .
 
 <https://bio.tools/kmc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0622,
@@ -267378,7 +275718,7 @@ KAUST Metagenomic Analysis Platform.""" ;
     sc:url "http://sun.aei.polsl.pl/REFRESH/index.php?page=projects&project=kmc&subpage=about" .
 
 <https://bio.tools/kmcEx> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTZ299>,
@@ -267399,7 +275739,7 @@ KAUST Metagenomic Analysis Platform.""" ;
         "Limsoon Wong" .
 
 <https://bio.tools/kmdata> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Library" ;
     sc:applicationSubCategory edam:topic_0219,
@@ -267422,7 +275762,7 @@ KAUST Metagenomic Analysis Platform.""" ;
     sc:url "https://github.com/raredd/kmdata" .
 
 <https://bio.tools/kmech> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0821,
@@ -267439,7 +275779,7 @@ KAUST Metagenomic Analysis Platform.""" ;
     sc:url "http://www.igb.uci.edu/tools/sb/metabolic-modeling/35-kmech.html" .
 
 <https://bio.tools/kmer-ssr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0157,
@@ -267454,7 +275794,7 @@ KAUST Metagenomic Analysis Platform.""" ;
     biotools:primaryContact "Perry Ridge" .
 
 <https://bio.tools/kmer-svm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0749,
@@ -267474,7 +275814,7 @@ KAUST Metagenomic Analysis Platform.""" ;
     biotools:primaryContact "Support" .
 
 <https://bio.tools/kmer2snp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_2885,
@@ -267491,7 +275831,7 @@ Kmer2SNP is a fast and accurate variants calling tool for next-generation sequen
     sc:url "https://github.com/yanboANU/Kmer2SNP" .
 
 <https://bio.tools/kmerPyramid> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3168,
         edam:topic_3174,
@@ -267511,7 +275851,7 @@ Kmer2SNP is a fast and accurate variants calling tool for next-generation sequen
     biotools:primaryContact "Klaus Jung" .
 
 <https://bio.tools/kmeranalyzer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:citation <https://doi.org/10.3389/fgene.2021.618170> ;
     sc:description "An alignment-free method capable of processing and counting k-mers in a reasonable time, while evaluating multiple values of the k parameter concurrently." ;
     sc:isAccessibleForFree true ;
@@ -267522,7 +275862,7 @@ Kmer2SNP is a fast and accurate variants calling tool for next-generation sequen
     biotools:primaryContact <https://orcid.org/0000-0002-0222-4273> .
 
 <https://bio.tools/kmerator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0659,
@@ -267535,20 +275875,23 @@ Kmer2SNP is a fast and accurate variants calling tool for next-generation sequen
         edam:operation_0450,
         edam:operation_3472,
         edam:operation_3800 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
     sc:name "Kmerator" ;
+    sc:softwareVersion "0.5.2" ;
     sc:url "https://github.com/Transipedia/kmerator" ;
     biotools:primaryContact "Thérèse Commes" .
 
 <https://bio.tools/kmerfinder> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_2546" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2955" ;
-            sc:name "Sequence report" ;
-            sc:sameAs "http://edamontology.org/data_2955" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2955" ;
+            sc:encodingFormat "http://edamontology.org/format_2333" ;
+            sc:name "Sequence report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3305 ;
@@ -267570,7 +275913,7 @@ Kmer2SNP is a fast and accurate variants calling tool for next-generation sequen
     biotools:primaryContact "Ole Lund" .
 
 <https://bio.tools/kmergenie> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btt310> ;
@@ -267584,7 +275927,7 @@ Kmer2SNP is a fast and accurate variants calling tool for next-generation sequen
     biotools:primaryContact "KmerGenie Support" .
 
 <https://bio.tools/kmergo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0196,
@@ -267605,7 +275948,7 @@ KmerGO is a user-friendly tool to identify the group-specific sequences on two g
     sc:url "https://github.com/ChnMasterOG/KmerGO" .
 
 <https://bio.tools/kmerkeys> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
@@ -267624,7 +275967,7 @@ KmerGO is a user-friendly tool to identify the group-specific sequences on two g
     biotools:primaryContact <https://orcid.org/0000-0003-3772-3424> .
 
 <https://bio.tools/kmerstream> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_2269,
@@ -267640,7 +275983,7 @@ KmerGO is a user-friendly tool to identify the group-specific sequences on two g
     biotools:primaryContact "Páll Melsted" .
 
 <https://bio.tools/kmtricks> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3174,
@@ -267659,10 +276002,10 @@ kmtricks is a modular tool suite for counting kmers, and constructing Bloom filt
 
 <https://bio.tools/kmx> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1234" ;
-            sc:name "Sequence set (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1234" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1234" ;
+            sc:encodingFormat "http://edamontology.org/format_1207" ;
+            sc:name "Sequence set (nucleic acid)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3047 ;
     sc:author "Ketil Malde" ;
@@ -267679,7 +276022,7 @@ kmtricks is a modular tool suite for counting kmers, and constructing Bloom filt
     biotools:primaryContact "Ketil Malde" .
 
 <https://bio.tools/knet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -267695,7 +276038,7 @@ kmtricks is a modular tool suite for counting kmers, and constructing Bloom filt
     sc:url "http://compbio.med.wayne.edu/software/KNet/index.htm" .
 
 <https://bio.tools/knetfold> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0082,
@@ -267710,7 +276053,7 @@ kmtricks is a modular tool suite for counting kmers, and constructing Bloom filt
     sc:url "https://binkley2.ncifcrf.gov/users/bshapiro/knetfold/kNetFold.html" .
 
 <https://bio.tools/knetminer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0780,
@@ -267732,18 +276075,17 @@ KnetMiner is a web application to search and visualise genome-scale knowledge ne
 
 <https://bio.tools/knime> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ] ;
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Image" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ],
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_2350" ;
+            sc:name "Image" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1772" ;
-            sc:name "Score" ;
-            sc:sameAs "http://edamontology.org/data_1772" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1772" ;
+            sc:name "Score" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0092,
@@ -267773,7 +276115,7 @@ KnetMiner is a web application to search and visualise genome-scale knowledge ne
     biotools:primaryContact "Alexander Fillbrunn" .
 
 <https://bio.tools/knime-cellular-phenotyping> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_2259 ;
     sc:citation <https://doi.org/10.1016/j.jbiotec.2017.07.019>,
@@ -267785,7 +276127,7 @@ KnetMiner is a web application to search and visualise genome-scale knowledge ne
     biotools:primaryContact "Manuel Gunkel" .
 
 <https://bio.tools/knime4bio> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0622,
@@ -267803,7 +276145,7 @@ KnetMiner is a web application to search and visualise genome-scale knowledge ne
     biotools:primaryContact "Pierre LINDENBAUM" .
 
 <https://bio.tools/knime4ngs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654,
@@ -267820,7 +276162,7 @@ KnetMiner is a web application to search and visualise genome-scale knowledge ne
     biotools:primaryContact "Robert Kueffner" .
 
 <https://bio.tools/knindex> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3068,
@@ -267840,7 +276182,7 @@ After your Node.js environment and MySQL are ready, find out the location of the
     sc:url "https://knindex.pufengdu.org" .
 
 <https://bio.tools/knit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -267860,7 +276202,7 @@ Knock-In / Knock-Out Network Interaction Tools.""" ;
     sc:url "http://knit.ims.bio" .
 
 <https://bio.tools/knnimpute> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0654,
@@ -267876,8 +276218,30 @@ Knock-In / Knock-Out Network Interaction Tools.""" ;
     sc:url "http://function.princeton.edu/software/" ;
     biotools:primaryContact "Russ B. Altman" .
 
+<https://bio.tools/knotali> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0080,
+        edam:topic_0082,
+        edam:topic_0097,
+        edam:topic_0659,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.21203/RS.3.RS-700965/V1> ;
+    sc:description "KnotAli is an algorithm for predicting the pseudoknotted secondary structures of RNA using relaxed Hierarchical Folding." ;
+    sc:featureList edam:operation_0278,
+        edam:operation_0292,
+        edam:operation_0502,
+        edam:operation_0570,
+        edam:operation_3469 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "KnotAli" ;
+    sc:operatingSystem "Linux",
+        "Mac" ;
+    sc:url "https://github.com/mateog4712/KnotAli" .
+
 <https://bio.tools/knotshape> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0099,
@@ -267893,7 +276257,7 @@ Knock-In / Knock-Out Network Interaction Tools.""" ;
         "Yanni Sun" .
 
 <https://bio.tools/know-me> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3068,
         edam:topic_3382,
@@ -267911,7 +276275,7 @@ Knock-In / Knock-Out Network Interaction Tools.""" ;
     sc:url "https://designfordementia.squarespace.com" .
 
 <https://bio.tools/knowseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0602,
@@ -267930,7 +276294,7 @@ Knock-In / Knock-Out Network Interaction Tools.""" ;
     biotools:primaryContact <https://orcid.org/0000-0002-7380-1023> .
 
 <https://bio.tools/kobamin> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -267955,7 +276319,7 @@ Knock-In / Knock-Out Network Interaction Tools.""" ;
     biotools:primaryContact "Purdue University, College of Science" .
 
 <https://bio.tools/kobas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0602,
@@ -267974,7 +276338,7 @@ Knock-In / Knock-Out Network Interaction Tools.""" ;
     biotools:primaryContact "Liping Wei" .
 
 <https://bio.tools/kobt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -267991,7 +276355,7 @@ Knock-In / Knock-Out Network Interaction Tools.""" ;
     sc:url "https://cran.r-project.org/web/packages/KOBT/index.html" .
 
 <https://bio.tools/kodama> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3365,
@@ -268011,7 +276375,7 @@ Knock-In / Knock-Out Network Interaction Tools.""" ;
     biotools:primaryContact "Stefano Cacciatore" .
 
 <https://bio.tools/kollector> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0749,
@@ -268027,7 +276391,7 @@ Knock-In / Knock-Out Network Interaction Tools.""" ;
     biotools:primaryContact "Inanc Birol" .
 
 <https://bio.tools/kolmogorov> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0081,
@@ -268044,7 +276408,7 @@ Knock-In / Knock-Out Network Interaction Tools.""" ;
     biotools:primaryContact "Raffaele Giancarlo" .
 
 <https://bio.tools/komb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3174,
         edam:topic_3697,
@@ -268059,8 +276423,28 @@ Revealing repeats using K-core on unitig graphs.""" ;
     sc:name "KOMB" ;
     sc:url "https://gitlab.com/treangenlab/komb.git" .
 
+<https://bio.tools/kombat> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0218,
+        edam:topic_0621,
+        edam:topic_3374,
+        edam:topic_3375 ;
+    sc:citation <https://doi.org/10.20944/PREPRINTS202110.0033.V1> ;
+    sc:description "Knowledgebase of Microbes’ Battling Agents for Therapeutics." ;
+    sc:featureList edam:operation_0306,
+        edam:operation_3482 ;
+    sc:isAccessibleForFree true ;
+    sc:name "KOMBAT" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://kombat.igib.res.in/" .
+
 <https://bio.tools/komenti> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0218,
@@ -268077,7 +276461,7 @@ Komenti is a tool for semantic query, annotation, and analysis of text using ont
     sc:url "http://github.com/reality/komenti" .
 
 <https://bio.tools/komodo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -268094,7 +276478,7 @@ Komenti is a tool for semantic query, annotation, and analysis of text using ont
     biotools:primaryContact "FP Lobo" .
 
 <https://bio.tools/kontaminant> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3168 ;
@@ -268108,7 +276492,7 @@ Komenti is a tool for semantic query, annotation, and analysis of text using ont
     sc:url "http://www.tgac.ac.uk/kontaminant/" .
 
 <https://bio.tools/korp-pl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0154,
@@ -268128,7 +276512,7 @@ Our Knowledge-base ORientational Potential (KORP-PL), developed in a joint-ventu
     sc:url "https://team.inria.fr/nano-d/korp-pl/" .
 
 <https://bio.tools/kosmos> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -268150,7 +276534,7 @@ Our Knowledge-base ORientational Potential (KORP-PL), developed in a joint-ventu
     biotools:primaryContact "Kosmos team" .
 
 <https://bio.tools/kot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3056,
@@ -268166,7 +276550,7 @@ Our Knowledge-base ORientational Potential (KORP-PL), developed in a joint-ventu
     sc:url "https://eeg-ebe.github.io/KoT/" .
 
 <https://bio.tools/kotai_antibody_builder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2275,
         edam:topic_2814,
@@ -268182,7 +276566,7 @@ Our Knowledge-base ORientational Potential (KORP-PL), developed in a joint-ventu
     sc:url "http://kotaiab.org/" .
 
 <https://bio.tools/kourami> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2815,
         edam:topic_2830,
@@ -268198,7 +276582,7 @@ Our Knowledge-base ORientational Potential (KORP-PL), developed in a joint-ventu
     biotools:primaryContact "Carl Kingsford" .
 
 <https://bio.tools/kpath> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3168 ;
@@ -268212,7 +276596,7 @@ Our Knowledge-base ORientational Potential (KORP-PL), developed in a joint-ventu
     sc:url "http://www.cs.cmu.edu/~ckingsf/software/pathenc/" .
 
 <https://bio.tools/kpi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0632,
@@ -268231,7 +276615,7 @@ Our Knowledge-base ORientational Potential (KORP-PL), developed in a joint-ventu
     sc:url "https://github.com/droeatumn/kpi" .
 
 <https://bio.tools/kplogo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0659,
@@ -268255,8 +276639,21 @@ Our Knowledge-base ORientational Potential (KORP-PL), developed in a joint-ventu
     sc:url "http://kplogo.wi.mit.edu/" ;
     biotools:primaryContact <http://orcid.org/0000-0003-0369-5269> .
 
+<https://bio.tools/kpnn> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:citation <https://doi.org/10.1186/s13059-020-02100-5>,
+        "pubmed:32746932" ;
+    sc:description "Knowledge-primed neural networks developed in the Bock lab at CeMM. KPNNs are neural networks that are trained using a knowledge-based network structure, which enables interpretability after training. Networks used in KPNNs should consist of nodes with labels (for example proteins in biological networks) that are connected based on prior knolwedge. After training, KPNNs enable extraction of node weights (importance scores) that represent the importance of individual nodes for the prediction." ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "KPNN" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/epigen/KPNN" .
+
 <https://bio.tools/krait> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0632,
@@ -268278,14 +276675,14 @@ Our Knowledge-base ORientational Potential (KORP-PL), developed in a joint-ventu
 
 <https://bio.tools/kraken> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3494" ;
-            sc:name "DNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3494" ] ;
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:encodingFormat "http://edamontology.org/format_2546" ;
+            sc:name "DNA sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3028" ;
-            sc:name "Taxonomy" ;
-            sc:sameAs "http://edamontology.org/data_3028" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3028" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Taxonomy" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0637,
         edam:topic_3174 ;
@@ -268303,14 +276700,14 @@ Our Knowledge-base ORientational Potential (KORP-PL), developed in a joint-ventu
 
 <https://bio.tools/kraken2> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3494" ;
-            sc:name "DNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3494" ] ;
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "DNA sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3028" ;
-            sc:name "Taxonomy" ;
-            sc:sameAs "http://edamontology.org/data_3028" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3028" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Taxonomy" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0637,
         edam:topic_3174 ;
@@ -268325,18 +276722,18 @@ Our Knowledge-base ORientational Potential (KORP-PL), developed in a joint-ventu
 
 <https://bio.tools/krakentools> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3028" ;
-            sc:name "Taxonomy" ;
-            sc:sameAs "http://edamontology.org/data_3028" ],
+            sc:additionalType "http://edamontology.org/data_3028" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Taxonomy" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3028" ;
-            sc:name "Taxonomy" ;
-            sc:sameAs "http://edamontology.org/data_3028" ] ;
+            sc:additionalType "http://edamontology.org/data_3028" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Taxonomy" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3028" ;
-            sc:name "Taxonomy" ;
-            sc:sameAs "http://edamontology.org/data_3028" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3028" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Taxonomy" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0637,
         edam:topic_3174 ;
@@ -268352,7 +276749,7 @@ Our Knowledge-base ORientational Potential (KORP-PL), developed in a joint-ventu
     sc:url "https://github.com/jenniferlu717/KrakenTools" .
 
 <https://bio.tools/krds> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0821,
@@ -268371,7 +276768,7 @@ Our Knowledge-base ORientational Potential (KORP-PL), developed in a joint-ventu
     biotools:primaryContact "Support" .
 
 <https://bio.tools/krgdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3390,
@@ -268391,7 +276788,7 @@ Our Knowledge-base ORientational Potential (KORP-PL), developed in a joint-ventu
     sc:url "http://coda.nih.go.kr/coda/KRGDB/index.jsp" .
 
 <https://bio.tools/krisp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3293,
@@ -268414,7 +276811,7 @@ Our Knowledge-base ORientational Potential (KORP-PL), developed in a joint-ventu
         "Tulio de Oliveira" .
 
 <https://bio.tools/krona> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_3174 ;
     sc:citation "pubmed:21961884" ;
@@ -268431,22 +276828,22 @@ Our Knowledge-base ORientational Potential (KORP-PL), developed in a joint-ventu
 
 <https://bio.tools/kronaextract> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0637,
@@ -268466,7 +276863,7 @@ Our Knowledge-base ORientational Potential (KORP-PL), developed in a joint-ventu
     biotools:primaryContact "Galaxy Support Team" .
 
 <https://bio.tools/kronos> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0622,
@@ -268483,26 +276880,60 @@ Our Knowledge-base ORientational Potential (KORP-PL), developed in a joint-ventu
     sc:url "https://github.com/jtaghiyar/kronos" ;
     biotools:primaryContact "Jafar Taghiyar" .
 
+<https://bio.tools/kronos_scrt> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Script" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0621,
+        edam:topic_0654,
+        edam:topic_2229,
+        edam:topic_3940 ;
+    sc:citation <https://doi.org/10.1101/2021.09.01.458599> ;
+    sc:description "A uniform framework for single-cell replication timing analysis." ;
+    sc:featureList edam:operation_3454,
+        edam:operation_3802 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "Kronos scRT" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/CL-CHEN-Lab/Kronos_scRT" .
+
 <https://bio.tools/krsa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
-    sc:additionalType "Command-line tool" ;
-    sc:applicationSubCategory edam:topic_0128,
-        edam:topic_0203,
-        edam:topic_3518 ;
-    sc:citation <https://doi.org/10.1101/2020.08.26.268581> ;
-    sc:description "Network-based Prediction of Differential Kinase Activity from Kinome Array Data." ;
-    sc:featureList edam:operation_0417,
-        edam:operation_0531,
-        edam:operation_3927 ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0121,
+        edam:topic_0154,
+        edam:topic_0601,
+        edam:topic_0769,
+        edam:topic_3179 ;
+    sc:citation <https://doi.org/10.1101/2020.08.26.268581>,
+        <https://doi.org/10.1371/JOURNAL.PONE.0260440>,
+        "pmcid:PMC8682895",
+        "pubmed:34919543" ;
+    sc:description "An R package and R Shiny web application for an end-to-end upstream kinase analysis of kinome array data." ;
+    sc:featureList edam:operation_0335,
+        edam:operation_0337,
+        edam:operation_3695,
+        edam:operation_3891,
+        edam:operation_3960 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Other" ;
     sc:name "KRSA" ;
-    sc:url "https://github.com/kalganem/KRSA" .
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://kalganem.shinyapps.io/KRSA/" .
 
 <https://bio.tools/kscv> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3112" ;
-            sc:name "Gene expression matrix" ;
-            sc:sameAs "http://edamontology.org/data_3112" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3112" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Gene expression matrix" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_2640,
@@ -268525,7 +276956,7 @@ Our Knowledge-base ORientational Potential (KORP-PL), developed in a joint-ventu
     sc:url "https://jiang-lab.shinyapps.io/kscv/" .
 
 <https://bio.tools/ksp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0128,
@@ -268544,7 +276975,7 @@ KSP is a method for predicting kinase annotations for phosphorylation sites by e
     sc:url "https://sourceforge.net/projects/kspscore/files/" .
 
 <https://bio.tools/ksp-puel> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0128,
@@ -268560,7 +276991,7 @@ KSP is a method for predicting kinase annotations for phosphorylation sites by e
     sc:url "https://github.com/PengyiYang/KSP-PUEL" .
 
 <https://bio.tools/ksrates> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0084,
@@ -268585,7 +277016,7 @@ KSP is a method for predicting kinase annotations for phosphorylation sites by e
     biotools:primaryContact <https://orcid.org/0000-0002-5341-136X> .
 
 <https://bio.tools/ksrepo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3053,
         edam:topic_3336,
@@ -268605,7 +277036,7 @@ KSP is a method for predicting kinase annotations for phosphorylation sites by e
     biotools:primaryContact "Adam Brown" .
 
 <https://bio.tools/kssd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0194,
@@ -268620,7 +277051,7 @@ KSP is a method for predicting kinase annotations for phosphorylation sites by e
     sc:url "https://github.com/yhg926/public_kssd" .
 
 <https://bio.tools/kth-package> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3518 ;
     sc:description "KTH-package provides a collection of tools designed to make the microarray data analysis easier." ;
@@ -268632,8 +277063,26 @@ KSP is a method for predicting kinase annotations for phosphorylation sites by e
     sc:softwareVersion "1.2.1" ;
     sc:url "http://www.biotech.kth.se/molbio/microarray/dataanalysis/index.html" .
 
+<https://bio.tools/ktop> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0621,
+        edam:topic_3421 ;
+    sc:citation <https://doi.org/10.1016/J.EURURO.2021.12.008>,
+        "pubmed:35000822" ;
+    sc:description "Kidney Transplantation Outcome Predictions (KTOP) allows the prediction of certain outcomes after kidney transplantations from brain-dead deceased donors." ;
+    sc:featureList edam:operation_3503,
+        edam:operation_3659 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "KTOP" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://riskcalc.org/ktop/" .
+
 <https://bio.tools/ktreedist> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_3293,
@@ -268650,7 +277099,7 @@ KSP is a method for predicting kinase annotations for phosphorylation sites by e
     biotools:primaryContact "Castresana Villamor, José" .
 
 <https://bio.tools/ktrim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3068,
         edam:topic_3168 ;
@@ -268665,7 +277114,7 @@ There is a bug in multi-file handling in v1.2.0 and previous versions of Ktrim,
     sc:url "https://github.com/hellosunking/Ktrim/" .
 
 <https://bio.tools/ktwas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0625,
@@ -268685,7 +277134,7 @@ The kTWAS program leverages TWAS-like feature selection (Elastic Net weights) fo
     sc:url "https://github.com/theLongLab/kTWAS" .
 
 <https://bio.tools/kuenm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0610 ;
@@ -268702,7 +277151,7 @@ The kTWAS program leverages TWAS-like feature selection (Elastic Net weights) fo
     biotools:primaryContact "Marlon E. Cobos" .
 
 <https://bio.tools/kul-vbg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3304,
         edam:topic_3384,
@@ -268722,7 +277171,7 @@ A workflow to allow Freesurfer recon-all to run on brain images with large lesio
     sc:url "https://github.com/KUL-Radneuron/KUL_VBG" .
 
 <https://bio.tools/kups> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0121,
@@ -268744,7 +277193,7 @@ A workflow to allow Freesurfer recon-all to run on brain images with large lesio
     biotools:primaryContact "Xue-wen Chen" .
 
 <https://bio.tools/kusakidb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0780,
@@ -268763,7 +277212,7 @@ KusakiDB is a database of protein orthologous groups (OGs) that:.""" ;
     sc:url "http://pgdbjsnp.kazusa.or.jp/app/kusakidb" .
 
 <https://bio.tools/kvarpreddb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0199,
@@ -268782,7 +277231,7 @@ KusakiDB is a database of protein orthologous groups (OGs) that:.""" ;
     sc:url "http://bioinfo.zju.edu.cn/KVarPredDB" .
 
 <https://bio.tools/kvarq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
@@ -268804,8 +277253,38 @@ KusakiDB is a database of protein orthologous groups (OGs) that:.""" ;
     sc:softwareVersion "0.12.2" ;
     sc:url "https://www.swisstph.ch/en/about/mpi/tuberculosis-research/kvarq-targeted-and-direct-variant-calling-in-fastq-reads-of-bacterial-genomes/" .
 
+<https://bio.tools/kvfinder> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_0883" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Structure" ] ;
+    bsc:output [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2878" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Protein structural motif" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Plug-in" ;
+    sc:applicationSubCategory edam:topic_0081,
+        edam:topic_1317,
+        edam:topic_2814,
+        edam:topic_3332 ;
+    sc:citation <https://doi.org/10.1186/1471-2105-15-197> ;
+    sc:description """The KVFinder software, originally published in 2014, is DEPRECATED.
+
+We published more recent software: parKVFinder and pyKVFinder.""" ;
+    sc:featureList edam:operation_0250,
+        edam:operation_2575,
+        edam:operation_3351 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "KVFinder" ;
+    sc:operatingSystem "Linux",
+        "Windows" ;
+    sc:url "http://lnbio.cnpem.br/bioinformatics/main/software/" .
+
 <https://bio.tools/kvik> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2259 ;
@@ -268823,7 +277302,7 @@ KusakiDB is a database of protein orthologous groups (OGs) that:.""" ;
     sc:url "https://github.com/fjukstad/kvik" .
 
 <https://bio.tools/kwarg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0749,
@@ -268840,14 +277319,14 @@ Software implementing a parsimony-based heuristic algorithm for reconstructing a
 
 <https://bio.tools/kwip> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0848" ;
-            sc:name "Raw sequence" ;
-            sc:sameAs "http://edamontology.org/data_0848" ] ;
+            sc:additionalType "http://edamontology.org/data_0848" ;
+            sc:encodingFormat "http://edamontology.org/format_2571" ;
+            sc:name "Raw sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0870" ;
-            sc:name "Sequence distance matrix" ;
-            sc:sameAs "http://edamontology.org/data_0870" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0870" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "Sequence distance matrix" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0622,
@@ -268867,7 +277346,7 @@ Software implementing a parsimony-based heuristic algorithm for reconstructing a
     biotools:primaryContact "Kevin Murray" .
 
 <https://bio.tools/kymoanalyzer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_3334,
         edam:topic_3383 ;
@@ -268886,7 +277365,7 @@ Software implementing a parsimony-based heuristic algorithm for reconstructing a
     sc:url "https://www.encalada.scripps.edu/kymoanalyzer" .
 
 <https://bio.tools/kymorod> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0780,
@@ -268903,7 +277382,7 @@ Software implementing a parsimony-based heuristic algorithm for reconstructing a
     biotools:primaryContact "Philippe Andrey" .
 
 <https://bio.tools/kyrix-s> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_3315,
@@ -268923,7 +277402,7 @@ Kyrix facilitates the creation of data visualizations with details-on-demand int
     sc:url "https://github.com/tracyhenry/kyrix" .
 
 <https://bio.tools/l-measure> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3334,
@@ -268939,8 +277418,20 @@ Kyrix facilitates the creation of data visualizations with details-on-demand int
         <http://cng.gmu.edu:8080/Lm/help/index.htm> ;
     sc:url "http://cng.gmu.edu:8080/Lm/" .
 
+<https://bio.tools/l1-soul> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Desktop application" ;
+    sc:applicationSubCategory edam:topic_0634,
+        edam:topic_3954 ;
+    sc:citation <https://doi.org/10.1109/TUFFC.2022.3141686>,
+        "pubmed:34995188" ;
+    sc:description "Second-Order Ultrasound Elastography With L1-Norm Spatial Regularization." ;
+    sc:isAccessibleForFree true ;
+    sc:name "L1-SOUL" ;
+    sc:url "https://users.encs.concordia.ca/~impact/code/" .
+
 <https://bio.tools/l1kdeconv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203 ;
     sc:citation <https://doi.org/10.1186/s12859-017-1767-9> ;
@@ -268955,7 +277446,7 @@ Kyrix facilitates the creation of data visualizations with details-on-demand int
     biotools:primaryContact "Zhao Li" .
 
 <https://bio.tools/l1pred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0821 ;
     sc:description "L1pred is a sequence-based prediction tool for catalytic residues in enzymes with the L1-logreg classifier" ;
@@ -268966,7 +277457,7 @@ Kyrix facilitates the creation of data visualizations with details-on-demand int
     sc:url "http://sysbio.unl.edu/L1pred/" .
 
 <https://bio.tools/l2l> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0204 ;
@@ -268981,7 +277472,7 @@ Kyrix facilitates the creation of data visualizations with details-on-demand int
     sc:url "http://depts.washington.edu/l2l/" .
 
 <https://bio.tools/l3fnet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3382,
         edam:topic_3474 ;
@@ -268997,14 +277488,12 @@ Light Field (LF) offers unique advantages such as post-capture refocusing and de
 
 <https://bio.tools/la-images> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:name "Mass spectrometry spectra" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:name "Image" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0121,
@@ -269027,7 +277516,7 @@ Light Field (LF) offers unique advantages such as post-capture refocusing and de
     biotools:primaryContact "LA-iMages support" .
 
 <https://bio.tools/lab7> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0607,
         edam:topic_0622,
@@ -269041,7 +277530,7 @@ Light Field (LF) offers unique advantages such as post-capture refocusing and de
     sc:url "http://www.lab7.io" .
 
 <https://bio.tools/labcas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0080,
@@ -269058,14 +277547,14 @@ Light Field (LF) offers unique advantages such as post-capture refocusing and de
     biotools:primaryContact "Hong-Bin" .
 
 <https://bio.tools/label3dmaize> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "Label3DMaize was applied to achieve semi-automatic point cloud segmentation and annotation of maize shoots at different growth stages, through a series of operations, including stem segmentation, coarse segmentation, fine segmentation, and sample-based segmentation." ;
     sc:name "Label3DMaize" ;
     sc:softwareVersion "2.0" ;
     sc:url "https://github.com/syau-miao/Label3DMaize.git" .
 
 <https://bio.tools/labial-thermistor-potentiometer-processing> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344 ;
@@ -269081,7 +277570,7 @@ Light Field (LF) offers unique advantages such as post-capture refocusing and de
     biotools:primaryContact "Nicole Prause" .
 
 <https://bio.tools/labrat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2640,
@@ -269106,7 +277595,7 @@ Light Field (LF) offers unique advantages such as post-capture refocusing and de
     sc:url "https://github.com/TaliaferroLab/LABRAT/" .
 
 <https://bio.tools/labxdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Database portal" ;
     sc:applicationSubCategory edam:topic_0607,
@@ -269127,7 +277616,7 @@ LabxDB for high-throughput sequencing (HTS) annotation. LabxDB seq organizes sam
     sc:url "https://labxdb.vejnar.org" .
 
 <https://bio.tools/lachesis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_2269 ;
@@ -269140,8 +277629,29 @@ LabxDB for high-throughput sequencing (HTS) annotation. LabxDB seq organizes sam
     sc:softwareHelp <https://github.com/shendurelab/LACHESIS> ;
     sc:url "http://shendurelab.github.io/LACHESIS/" .
 
+<https://bio.tools/lacop> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0114,
+        edam:topic_0204,
+        edam:topic_0602,
+        edam:topic_0625,
+        edam:topic_3407 ;
+    sc:citation <https://doi.org/10.1002/BMB.21638>,
+        "pubmed:35723033" ;
+    sc:description "A free web-based lac operon simulation that enhances student learning of gene regulation concepts." ;
+    sc:featureList edam:operation_0435,
+        edam:operation_3196,
+        edam:operation_3928 ;
+    sc:isAccessibleForFree true ;
+    sc:name "LacOp" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://flask-env.rnwhymamqf.us-west-2.elasticbeanstalk.com/lacop" .
+
 <https://bio.tools/ladderfinder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0654,
@@ -269158,7 +277668,7 @@ LabxDB for high-throughput sequencing (HTS) annotation. LabxDB seq organizes sam
     sc:url "http://services.appliedgenomics.org/software/ladderfinder/" .
 
 <https://bio.tools/lagan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0622,
@@ -269175,7 +277685,7 @@ LabxDB for high-throughput sequencing (HTS) annotation. LabxDB seq organizes sam
     biotools:primaryContact "Michael Brudno" .
 
 <https://bio.tools/lahedes> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0199,
@@ -269197,7 +277707,7 @@ LabxDB for high-throughput sequencing (HTS) annotation. LabxDB seq organizes sam
     biotools:primaryContact "LAHEDES Support" .
 
 <https://bio.tools/lahma> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0601,
@@ -269221,14 +277731,14 @@ Search LAHMA database by PDB identifier.""" ;
 
 <https://bio.tools/lailaps> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0968" ;
-            sc:name "Keyword" ;
-            sc:sameAs "http://edamontology.org/data_0968" ] ;
+            sc:additionalType "http://edamontology.org/data_0968" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Keyword" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2080" ;
-            sc:name "Database search results" ;
-            sc:sameAs "http://edamontology.org/data_2080" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2080" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Database search results" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0780 ;
@@ -269254,7 +277764,7 @@ Search LAHMA database by PDB identifier.""" ;
         "Jinbo Chen" .
 
 <https://bio.tools/lailaps-qsm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0218,
@@ -269277,14 +277787,13 @@ Search LAHMA database by PDB identifier.""" ;
 
 <https://bio.tools/lailapsipk> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0968" ;
-            sc:name "Keyword" ;
-            sc:sameAs "http://edamontology.org/data_0968" ] ;
+            sc:additionalType "http://edamontology.org/data_0968" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Keyword" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2080" ;
-            sc:name "Database search results" ;
-            sc:sameAs "http://edamontology.org/data_2080" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2080" ;
+            sc:name "Database search results" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0780 ;
@@ -269307,7 +277816,7 @@ Search LAHMA database by PDB identifier.""" ;
         "Jinbo Chen" .
 
 <https://bio.tools/laj> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0080 ;
@@ -269325,42 +277834,42 @@ Search LAHMA database by PDB identifier.""" ;
 
 <https://bio.tools/laj_1> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_1381" ;
+            sc:encodingFormat "http://edamontology.org/format_3014" ;
+            sc:name "Sequence alignment (pair)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1381" ;
-            sc:name "Sequence alignment (pair)" ;
-            sc:sameAs "http://edamontology.org/data_1381" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0092,
@@ -269382,7 +277891,7 @@ Search LAHMA database by PDB identifier.""" ;
     biotools:primaryContact "Galaxy Support Team" .
 
 <https://bio.tools/lakemorpho> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3387,
@@ -269401,7 +277910,7 @@ Search LAHMA database by PDB identifier.""" ;
     biotools:primaryContact "Jeffrey Hollister" .
 
 <https://bio.tools/laketrophicmodelling> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_2269 ;
     sc:citation <https://doi.org/10.7287/PEERJ.PREPRINTS.1319V2>,
@@ -269419,24 +277928,23 @@ This repository contains all the materials needed to reproduce Hollister et al.
 
 <https://bio.tools/lalign> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1381" ;
-            sc:name "Sequence alignment (pair)" ;
-            sc:sameAs "http://edamontology.org/data_1381" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1381" ;
+            sc:name "Sequence alignment (pair)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0157 ;
     sc:author "Bill Pearson",
-        "Web Production" ;
-    sc:citation <https://doi.org/10.1385/1-59259-192-2:185> ;
+        "Job Dispatcher" ;
+    sc:citation <https://doi.org/10.1093/nar/gkac240>,
+        <https://doi.org/10.1385/1-59259-192-2:185> ;
     sc:description "Find internal duplications by calculating non-intersecting local sequence alignments." ;
     sc:featureList edam:operation_0491,
         edam:operation_0495 ;
-    sc:name "LALIGN" ;
+    sc:name "LALIGN (EBI)" ;
     sc:operatingSystem "Linux",
         "Mac",
         "Windows" ;
@@ -269446,29 +277954,10 @@ This repository contains all the materials needed to reproduce Hollister et al.
         <http://www.ebi.ac.uk/about/terms-of-use> ;
     sc:softwareVersion "1" ;
     sc:url "http://www.ebi.ac.uk/Tools/psa/lalign/" ;
-    biotools:primaryContact "Web Production" .
-
-<https://bio.tools/lalign_sib> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
-    sc:additionalType "Web application" ;
-    sc:applicationSubCategory edam:topic_0080,
-        edam:topic_0121,
-        edam:topic_0622 ;
-    sc:description "LALIGN, from the FASTA package,  finds multiple matching subsegments in two sequences, locally or globally." ;
-    sc:featureList edam:operation_0292,
-        edam:operation_0346,
-        edam:operation_0491,
-        edam:operation_2479 ;
-    sc:name "LALIGN (SIB)" ;
-    sc:operatingSystem "Linux",
-        "Mac",
-        "Windows" ;
-    sc:softwareHelp <https://embnet.vital-it.ch/software/LALIGN.man.html> ;
-    sc:url "http://embnet.vital-it.ch/software/LALIGN_form.html" ;
-    biotools:primaryContact "Bill Pearson" .
+    biotools:primaryContact "Job Dispatcher Team" .
 
 <https://bio.tools/lama> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0769,
@@ -269487,7 +277976,7 @@ Welcome to LAMA, an open source pipeline to automatically identify embryo dysmor
     sc:url "https://github.com/mpi2/LAMA" .
 
 <https://bio.tools/lambda-r> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_2269,
@@ -269505,7 +277994,7 @@ An R package of model based clustering for flow and mass cytometry data.""" ;
     sc:url "https://github.com/abikoushi/lambda" .
 
 <https://bio.tools/laminin_database> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0623,
@@ -269525,7 +278014,7 @@ An R package of model based clustering for flow and mass cytometry data.""" ;
     sc:url "http://www.lm.lncc.br" .
 
 <https://bio.tools/lamp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_2840,
         edam:topic_3301,
@@ -269544,7 +278033,7 @@ An R package of model based clustering for flow and mass cytometry data.""" ;
     biotools:primaryContact "Support" .
 
 <https://bio.tools/lampa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0099,
@@ -269575,7 +278064,7 @@ Sorry, this file is invalid so it cannot be displayed.""" ;
     sc:url "https://github.com/Gorbalenya-Lab/LAMPA" .
 
 <https://bio.tools/lamplink> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2885,
@@ -269590,7 +278079,7 @@ Sorry, this file is invalid so it cannot be displayed.""" ;
     sc:url "http://a-terada.github.io/lamplink/" .
 
 <https://bio.tools/lamps> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0632,
@@ -269613,7 +278102,7 @@ The 'Ligation-mediated Amplified, Multiplexed Primer-pair Sequence' or LAMPS is
     sc:url "https://github.com/BlanchetteLab/LAMPS" .
 
 <https://bio.tools/lanceotron> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0749,
@@ -269632,7 +278121,7 @@ LanceOtron is a machine learning, genomic data extraction and analysis tool trai
     sc:url "https://lanceotron.molbiol.ox.ac.uk" .
 
 <https://bio.tools/lancet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0199,
@@ -269649,24 +278138,8 @@ Lancet is a somatic variant caller (SNVs and indels) for short read data. Lancet
     sc:name "Lancet" ;
     sc:url "https://github.com/nygenome/lancet" .
 
-<https://bio.tools/land> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0102,
-        edam:topic_3068 ;
-    sc:citation <https://doi.org/10.7287/PEERJ.PREPRINTS.27214V2> ;
-    sc:description """Open educational resources for validation of global high-resolution land cover maps.
-
-Land cover (LC) maps are crucial to analyze and understand several phenomena, including urbanization, deforestation and climate change. This elevates the importance of their accuracy, which is assessed through a validation process. However, we observed that knowledge on the importance of LC maps and their validation is limited. Hence, a set of educational resources has been created to assist in the validation of LC maps. These resources, available under an open access license, focus on validation through open source and easy-to-use software. Moreover, addressing the lack of accurate and up-to-date reference LC data, an application has been developed that provides users a means to collect LC data.
-
-||| HOMEPAGE BROKEN!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'deforestation', 'LC', 'urbanization', 'elevates'""" ;
-    sc:featureList edam:operation_2428,
-        edam:operation_2429 ;
-    sc:name "land" ;
-    sc:url "http://www.gisgeolab.polimi.it/docs/training/ISPRS2018/Land" .
-
 <https://bio.tools/lantern> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0203,
@@ -269687,7 +278160,7 @@ Land cover (LC) maps are crucial to analyze and understand several phenomena, in
     biotools:primaryContact <https://orcid.org/0000-0001-7351-6268> .
 
 <https://bio.tools/laocoon> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_2229,
@@ -269700,7 +278173,7 @@ Land cover (LC) maps are crucial to analyze and understand several phenomena, in
     sc:url "https://github.com/edukait/laocoon" .
 
 <https://bio.tools/lapmix> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3518 ;
@@ -269717,7 +278190,7 @@ Land cover (LC) maps are crucial to analyze and understand several phenomena, in
     biotools:primaryContact "Yann Ruffieux" .
 
 <https://bio.tools/lara> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0097,
@@ -269735,8 +278208,32 @@ Land cover (LC) maps are crucial to analyze and understand several phenomena, in
     sc:url "http://www.mi.fu-berlin.de/w/LiSA/Lara" ;
     biotools:primaryContact "Bauer M" .
 
+<https://bio.tools/lara_2> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workflow" ;
+    sc:applicationSubCategory edam:topic_0080,
+        edam:topic_0097,
+        edam:topic_0166,
+        edam:topic_0659,
+        edam:topic_3170 ;
+    sc:citation <https://doi.org/10.1186/S12859-021-04532-7>,
+        "pmcid:PMC8734264",
+        "pubmed:34991448" ;
+    sc:description "Parallel and vectorized program for sequence-structure alignment of RNA sequences." ;
+    sc:featureList edam:operation_0295,
+        edam:operation_0302,
+        edam:operation_0491,
+        edam:operation_0502 ;
+    sc:isAccessibleForFree true ;
+    sc:license "BSD-3-Clause" ;
+    sc:name "LaRA 2" ;
+    sc:operatingSystem "Linux",
+        "Mac" ;
+    sc:softwareHelp <https://seqan.github.io/lara/> ;
+    sc:url "https://github.com/seqan/lara" .
+
 <https://bio.tools/larva> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0199,
@@ -269753,7 +278250,7 @@ Land cover (LC) maps are crucial to analyze and understand several phenomena, in
     biotools:primaryContact "Mark Gerstein" .
 
 <https://bio.tools/larvalign> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3334,
@@ -269773,7 +278270,7 @@ Land cover (LC) maps are crucial to analyze and understand several phenomena, in
     biotools:primaryContact "Dorit Merhof" .
 
 <https://bio.tools/lasagna-search> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
@@ -269791,7 +278288,7 @@ Land cover (LC) maps are crucial to analyze and understand several phenomena, in
     biotools:primaryContact "Chun-Hsi Huang" .
 
 <https://bio.tools/laser> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0625,
@@ -269809,7 +278306,7 @@ Land cover (LC) maps are crucial to analyze and understand several phenomena, in
     sc:url "http://genome.sph.umich.edu/wiki/LASER" .
 
 <https://bio.tools/lasergene> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0102,
@@ -269837,7 +278334,7 @@ Land cover (LC) maps are crucial to analyze and understand several phenomena, in
     biotools:primaryContact "Contact Form" .
 
 <https://bio.tools/lassim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0208,
         edam:topic_0622,
@@ -269855,7 +278352,7 @@ Land cover (LC) maps are crucial to analyze and understand several phenomena, in
     biotools:primaryContact "Mika Gustafsson" .
 
 <https://bio.tools/last> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0797 ;
@@ -269872,7 +278369,7 @@ Land cover (LC) maps are crucial to analyze and understand several phenomena, in
     biotools:primaryContact "LAST Support" .
 
 <https://bio.tools/lastz> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622 ;
     sc:description "A tool for (1) aligning two DNA sequences, and (2) inferring appropriate scoring parameters automatically." ;
@@ -269886,7 +278383,7 @@ Land cover (LC) maps are crucial to analyze and understand several phenomena, in
     biotools:primaryContact "LASTZ Support" .
 
 <https://bio.tools/lasv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0122,
         edam:topic_0199,
@@ -269902,7 +278399,7 @@ Land cover (LC) maps are crucial to analyze and understand several phenomena, in
     sc:url "https://zlab.umassmed.edu/~zhuangj/laSV/" .
 
 <https://bio.tools/latent_Gaussian_copula_model> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_2885,
@@ -269919,7 +278416,7 @@ This gives the code for the latent Gaussian copula model.""" ;
     sc:url "https://github.com/Aiying0512/LGCM" .
 
 <https://bio.tools/lathe> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3174,
@@ -269940,7 +278437,7 @@ A tool for generating bacterial genomes from metagenomes with Nanopore long read
     sc:url "http://www.github.com/bhattlab/lathe" .
 
 <https://bio.tools/latpack> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3678 ;
     sc:citation <https://doi.org/10.2976/1.3027681> ;
@@ -269955,7 +278452,7 @@ A tool for generating bacterial genomes from metagenomes with Nanopore long read
     sc:url "http://www.bioinf.uni-freiburg.de/Software/LatPack/" .
 
 <https://bio.tools/layercake> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0622,
@@ -269974,7 +278471,7 @@ A tool for generating bacterial genomes from metagenomes with Nanopore long read
     biotools:primaryContact "Log in" .
 
 <https://bio.tools/layers> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_2814,
@@ -269990,7 +278487,7 @@ A tool for generating bacterial genomes from metagenomes with Nanopore long read
     sc:url "http://www.csb.iitkgp.ernet.in/applications/mol_layers/main" .
 
 <https://bio.tools/laynii> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3304,
@@ -270007,7 +278504,7 @@ Here are some extra scripts that we use in combination with LayNii.""" ;
     sc:url "https://github.com/ofgulban/LayNii_extras" .
 
 <https://bio.tools/lazyb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0196,
@@ -270031,8 +278528,33 @@ Here are some extra scripts that we use in combination with LayNii.""" ;
         "Windows" ;
     sc:url "https://github.com/TGatter/LazyB" .
 
+<https://bio.tools/lbd> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_0968" ;
+            sc:name "Keyword" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0219,
+        edam:topic_3300,
+        edam:topic_3360,
+        edam:topic_3422,
+        edam:topic_3577 ;
+    sc:citation <https://doi.org/10.1093/DATABASE/BAAC051>,
+        "pmcid:PMC9254641",
+        "pubmed:35788654" ;
+    sc:description "LBD (Lymphoma Biomarker Database) is a manually curated database of literature-supported biomarkers for lymphoma. It contains 793 biomarkers (715 single biomarkers and 78 combined biomarkers) for different subtypes of lymphoma which have been verified by experiments. The biomarkers are collected from 978 literatures from PubMed and are categorized into molecular (DNA, RNA, protein, chemical), cellular (cells or cell counts), image (imaging technologies or parameters), histopathological (characteristics of individuals' histopathological functioning), physiological (characteristics of individuals' normal functioning) biomarkers. By browsing and searching LBD, users can get access to comprehensive information about lymphoma biomarkers conveniently." ;
+    sc:featureList edam:operation_2421,
+        edam:operation_2428,
+        edam:operation_3435 ;
+    sc:isAccessibleForFree true ;
+    sc:name "LBD" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://bis.zju.edu.cn/LBD" .
+
 <https://bio.tools/lbd-covid19> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0218,
         edam:topic_3063,
@@ -270050,7 +278572,7 @@ Here are some extra scripts that we use in combination with LayNii.""" ;
     sc:url "https://github.com/kilicogluh/lbd-covid" .
 
 <https://bio.tools/lbe> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2269 ;
@@ -270067,8 +278589,24 @@ Here are some extra scripts that we use in combination with LayNii.""" ;
     sc:url "http://bioconductor.org/packages/release/bioc/html/LBE.html" ;
     biotools:primaryContact "Cyril Dalmasso" .
 
+<https://bio.tools/lbtope> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:citation <https://doi.org/10.1371/journal.pone.0062216>,
+        "pmcid:PMC3646881",
+        "pubmed:23667458" ;
+    sc:description "We developed a method LBtope for predicting linear B-cell epitopes. We developed several models using various techniques (e.g., SVM, IBk)on a large dataset of B-cell epitopes and non-epitopes (12063 epitopes and 20589 non epitopes obtained from IEDB database)." ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "lbtope" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/lbtope/index.php> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/lbtope/index.php" .
+
 <https://bio.tools/lc-ims-ms_feature_finder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -270080,7 +278618,7 @@ Here are some extra scripts that we use in combination with LayNii.""" ;
     sc:url "http://omics.pnl.gov/software/lc-ims-ms-feature-finder" .
 
 <https://bio.tools/lc-n2g> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3390,
@@ -270100,7 +278638,7 @@ Nutrigenomics aims at understanding the interaction between nutrition and gene i
     sc:url "http://shiny.maths.usyd.edu.au/LC-N2G/" .
 
 <https://bio.tools/lc3b-roi-quantification> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -270118,14 +278656,14 @@ Nutrigenomics aims at understanding the interaction between nutrition and gene i
 
 <https://bio.tools/lca> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0084 ;
@@ -270142,7 +278680,7 @@ Nutrigenomics aims at understanding the interaction between nutrition and gene i
     biotools:primaryContact "Galaxy Support Team" .
 
 <https://bio.tools/lcc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0202,
@@ -270165,8 +278703,32 @@ Estimates the longitudinal concordance correlation to access the longitudinal ag
     sc:name "lcc" ;
     sc:url "https://prof-thiagooliveira.shinyapps.io/lccApp/" .
 
+<https://bio.tools/lcmd> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_2640,
+        edam:topic_3172,
+        edam:topic_3360,
+        edam:topic_3520 ;
+    sc:citation <https://doi.org/10.1016/J.CSBJ.2021.12.002>,
+        "pmcid:PMC8683384",
+        "pubmed:34976312" ;
+    sc:description "The Lung Cancer Metabolome Database (LCMD), a freely available online database depositing 2013 lung cancer-related metabolites identified from 65 mass spectrometry-based lung cancer metabolomics studies." ;
+    sc:featureList edam:operation_2422,
+        edam:operation_3431,
+        edam:operation_3803 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "LCMD" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://cosbi7.ee.ncku.edu.tw/LCMD/" .
+
 <https://bio.tools/lcmix> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3366,
@@ -270182,7 +278744,7 @@ Estimates the longitudinal concordance correlation to access the longitudinal ag
     biotools:primaryContact "Katerina J. Kechris" .
 
 <https://bio.tools/lcms_tno_deco> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3172 ;
     sc:citation <https://doi.org/10.1002/rcm.6517> ;
@@ -270195,10 +278757,10 @@ Estimates the longitudinal concordance correlation to access the longitudinal ag
 
 <https://bio.tools/lcmsworld> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrum" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3244" ;
+            sc:name "Mass spectrum" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -270219,7 +278781,7 @@ Estimates the longitudinal concordance correlation to access the longitudinal ag
     sc:url "https://github.com/PGB-LIV/lcmsWorld" .
 
 <https://bio.tools/lcqs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_2269,
@@ -270237,7 +278799,7 @@ This software implements the LCQS algorithm described in: Fu J , Ke B , Dong S .
     sc:url "https://github.com/SCUT-CCNL/LCQS" .
 
 <https://bio.tools/lcsm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:citation <https://doi.org/10.31234/OSF.IO/ATJPU> ;
     sc:description "An R package and tutorial on latent change score modelling." ;
@@ -270251,7 +278813,7 @@ This software implements the LCQS algorithm described in: Fu J , Ke B , Dong S .
     sc:url "https://milanwiedemann.shinyapps.io/shinychange/" .
 
 <https://bio.tools/lct> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -270269,7 +278831,7 @@ LCT is a tool that analyzes a protein sequence and portrays its Low Complexity T
     sc:url "http://cbdm-01.zdv.uni-mainz.de/~munoz/lct/" .
 
 <https://bio.tools/lctc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0176,
@@ -270284,7 +278846,7 @@ LCT is a tool that analyzes a protein sequence and portrays its Low Complexity T
     biotools:primaryContact "Xuhui Huang" .
 
 <https://bio.tools/ld_select> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2885,
         edam:topic_3053,
@@ -270301,14 +278863,14 @@ LCT is a tool that analyzes a protein sequence and portrays its Low Complexity T
 
 <https://bio.tools/lda> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ] ;
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:encodingFormat "http://edamontology.org/format_3245" ;
+            sc:name "Mass spectrometry data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_3617" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0153,
         edam:topic_3172 ;
@@ -270328,7 +278890,7 @@ LCT is a tool that analyzes a protein sequence and portrays its Low Complexity T
     biotools:primaryContact "Gerhard Thallinger" .
 
 <https://bio.tools/ldacov> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0780,
         edam:topic_2269,
@@ -270347,7 +278909,7 @@ LCT is a tool that analyzes a protein sequence and portrays its Low Complexity T
     sc:url "https://github.com/gilsonshimizu/ldacov" .
 
 <https://bio.tools/ldagan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_2269,
@@ -270364,7 +278926,7 @@ Code for the image generation experiments in Latent Dirichlet Allocation in Gene
     sc:url "https://github.com/Sumching/LDAGAN" .
 
 <https://bio.tools/ldblock> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:description "Define data structures for linkage disequilibrium measures in populations." ;
@@ -270381,7 +278943,7 @@ Code for the image generation experiments in Latent Dirichlet Allocation in Gene
     biotools:primaryContact "VJ Carey" .
 
 <https://bio.tools/ldblockshow> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0622,
@@ -270401,7 +278963,7 @@ LDBlockShow is a fast and effective tool to generate linkage disequilibrium (LD)
     sc:url "https://github.com/BGI-shenzhen/LDBlockShow" .
 
 <https://bio.tools/ldetect> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3053,
         edam:topic_3056,
@@ -270415,8 +278977,31 @@ LDBlockShow is a fast and effective tool to generate linkage disequilibrium (LD)
     sc:url "https://bitbucket.org/nygcresearch/ldetect" ;
     biotools:primaryContact "Tomas Berisa" .
 
+<https://bio.tools/ldexpress> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_0203,
+        edam:topic_2640,
+        edam:topic_3305,
+        edam:topic_3517 ;
+    sc:citation <https://doi.org/10.1186/S12859-021-04531-8>,
+        "pmcid:PMC8686638",
+        "pubmed:34930111" ;
+    sc:description "An online tool for integrating population-specific linkage disequilibrium patterns with tissue-specific expression data." ;
+    sc:featureList edam:operation_0282,
+        edam:operation_0488,
+        edam:operation_3196,
+        edam:operation_3226 ;
+    sc:isAccessibleForFree true ;
+    sc:name "LDexpress" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://ldlink.nci.nih.gov/?tab=ldexpress" .
+
 <https://bio.tools/ldhelmet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3053,
@@ -270431,7 +279016,7 @@ LDBlockShow is a fast and effective tool to generate linkage disequilibrium (LD)
     biotools:primaryContact "Yun S. Song" .
 
 <https://bio.tools/ldkit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0625,
@@ -270452,7 +279037,7 @@ Run using Graphic User Interface (GUI).""" ;
     sc:url "https://github.com/tangyou79/LDkit" .
 
 <https://bio.tools/ldlink> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_3053,
         edam:topic_3056,
@@ -270469,7 +279054,7 @@ Run using Graphic User Interface (GUI).""" ;
     biotools:primaryContact "LDlink Admin" .
 
 <https://bio.tools/ldlinkr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0102,
@@ -270488,7 +279073,7 @@ LDlinkR - An R Package for Calculating Linkage Disequilibrium.""" ;
     sc:url "https://github.com/CBIIT/LDlinkR" .
 
 <https://bio.tools/ldm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3174,
         edam:topic_3697 ;
@@ -270504,7 +279089,7 @@ Linear Decomposition Model.""" ;
     sc:url "https://github.com/yijuanhu/LDM" .
 
 <https://bio.tools/ldmgen> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0625,
@@ -270520,7 +279105,7 @@ Linear Decomposition Model.""" ;
     biotools:primaryContact "Hongyu Zhao" .
 
 <https://bio.tools/ldmhap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0199,
@@ -270536,7 +279121,7 @@ Linear Decomposition Model.""" ;
     biotools:primaryContact "Hongyu Zhao" .
 
 <https://bio.tools/ldnfsgb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0634,
@@ -270555,7 +279140,7 @@ LDNFSGB:Predicting lncRNA-disease associations using network feature similarity
     sc:url "https://github.com/MLMIP/LDNFSGB" .
 
 <https://bio.tools/ldpac> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
@@ -270572,7 +279157,7 @@ LDNFSGB:Predicting lncRNA-disease associations using network feature similarity
     biotools:primaryContact "Buhm Han" .
 
 <https://bio.tools/ldpred2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_2885,
@@ -270595,7 +279180,7 @@ This tutorial only uses fake data for educational purposes. You should also prob
     sc:url "https://privefl.github.io/bigsnpr/articles/LDpred2.html" .
 
 <https://bio.tools/ldsc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3053 ;
@@ -270611,7 +279196,7 @@ This tutorial only uses fake data for educational purposes. You should also prob
     sc:url "https://github.com/bulik/ldsc" .
 
 <https://bio.tools/ldsep> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0625,
@@ -270631,7 +279216,7 @@ Estimate haplotypic or composite pairwise linkage disequilibrium (LD) in polyplo
     sc:url "https://cran.r-project.org/package=ldsep" .
 
 <https://bio.tools/ldso> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3053,
@@ -270648,7 +279233,7 @@ Estimate haplotypic or composite pairwise linkage disequilibrium (LD) in polyplo
     biotools:primaryContact "Florence Ytournel" .
 
 <https://bio.tools/ldwp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0199,
@@ -270663,7 +279248,7 @@ Estimate haplotypic or composite pairwise linkage disequilibrium (LD) in polyplo
     sc:url "http://www.cs.cityu.edu.hk/~lwang/software/LDWP/index.html" .
 
 <https://bio.tools/leBIBI> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0084 ;
     sc:description "Quick bioInformatic phylogeny of prokaryotes." ;
     sc:name "leBIBI" ;
@@ -270671,18 +279256,18 @@ Estimate haplotypic or composite pairwise linkage disequilibrium (LD) in polyplo
 
 <https://bio.tools/lea> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3112" ;
-            sc:name "Gene expression matrix" ;
-            sc:sameAs "http://edamontology.org/data_3112" ] ;
+            sc:additionalType "http://edamontology.org/data_3112" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Gene expression matrix" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ],
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Image" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0610,
@@ -270708,8 +279293,53 @@ Estimate haplotypic or composite pairwise linkage disequilibrium (LD) in polyplo
     sc:url "http://bioconductor.org/packages/release/bioc/html/LEA.html" ;
     biotools:primaryContact "Eric Frichot" .
 
+<https://bio.tools/lead-or> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_3300,
+        edam:topic_3304,
+        edam:topic_3384,
+        edam:topic_3421,
+        edam:topic_3444 ;
+    sc:citation <https://doi.org/10.7554/ELIFE.72929>,
+        "pmcid:PMC9177150",
+        "pubmed:35594135" ;
+    sc:description "A multimodal platform for deep brain stimulation surgery." ;
+    sc:featureList edam:operation_3435,
+        edam:operation_3443,
+        edam:operation_3890 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "Lead-OR" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://www.lead-dbs.org" .
+
+<https://bio.tools/leadd> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0196,
+        edam:topic_0209,
+        edam:topic_3047,
+        edam:topic_3299 ;
+    sc:citation <https://doi.org/10.1186/S13321-022-00582-Y>,
+        "pmcid:PMC8760751",
+        "pubmed:35033209" ;
+    sc:description "LEADD (Lamarckian Evolutionary Algorithm for de novo Drug Design) is a tool for molecular design and optimization." ;
+    sc:featureList edam:operation_0479,
+        edam:operation_3216,
+        edam:operation_3435,
+        edam:operation_4009 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "LEADD" ;
+    sc:operatingSystem "Linux" ;
+    sc:url "https://github.com/UAMCAntwerpen/LEADD" .
+
 <https://bio.tools/leafcuttermd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3320,
@@ -270732,7 +279362,7 @@ LeafCutter: Annotation-free quantification of RNA splicing.""" ;
     sc:url "http://davidaknowles.github.io/leafcutter" .
 
 <https://bio.tools/leafmachine> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_0780,
@@ -270750,8 +279380,32 @@ LeafMachine is a GUI that autonomously extracts leaf trait data from herbarium v
     sc:name "LeafMachine" ;
     sc:url "https://github.com/Gene-Weaver/LeafMachine" .
 
+<https://bio.tools/leafnet> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Desktop application",
+        "Web application",
+        "Workflow" ;
+    sc:applicationSubCategory edam:topic_0625,
+        edam:topic_0780,
+        edam:topic_3382 ;
+    sc:citation <https://doi.org/10.1093/PLCELL/KOAC021>,
+        "pmcid:PMC8972303",
+        "pubmed:35080620" ;
+    sc:description "LeafNet is a convenient tool that can robustly localize stomata and segment pavement cells for light-microscope images of leaves" ;
+    sc:featureList edam:operation_3443,
+        edam:operation_3553,
+        edam:operation_3799 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "LeafNet" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://leafnet.whu.edu.cn/doc> ;
+    sc:url "https://leafnet.whu.edu.cn/" .
+
 <https://bio.tools/leafoptimizer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0780,
@@ -270770,7 +279424,7 @@ LeafMachine is a GUI that autonomously extracts leaf trait data from herbarium v
     biotools:primaryContact "Christopher D Muir" .
 
 <https://bio.tools/leapr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -270788,8 +279442,15 @@ Layered Enrichment Analysis of Pathways in R (leapR) a tool that carries out sta
     sc:name "leapR" ;
     sc:url "https://github.com/biodataganache/leapR" .
 
+<https://bio.tools/learnMSA> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:description "Multiple sequence alignment formulated as a statistical machine learning problem, where an optimal profile hidden Markov model for a potentially very large family of protein sequences is searched and an alignment is decoded." ;
+    sc:name "learnMSA" ;
+    sc:softwareVersion "1.0.1" ;
+    sc:url "https://github.com/Gaius-Augustus/learnMSA" .
+
 <https://bio.tools/learnPopGen> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3055,
         edam:topic_3056,
@@ -270811,7 +279472,7 @@ Layered Enrichment Analysis of Pathways in R (leapR) a tool that carries out sta
     biotools:primaryContact "Liam J. Revell" .
 
 <https://bio.tools/learncoil> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078 ;
     sc:citation <https://doi.org/10.1073/pnas.95.6.2738> ;
@@ -270825,7 +279486,7 @@ Layered Enrichment Analysis of Pathways in R (leapR) a tool that carries out sta
     sc:url "http://groups.csail.mit.edu/cb/learncoil/webcoil.html" .
 
 <https://bio.tools/leave-detection-feature> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0780,
         edam:topic_3344,
@@ -270843,7 +279504,7 @@ Layered Enrichment Analysis of Pathways in R (leapR) a tool that carries out sta
     biotools:primaryContact "Ahmed Raafat" .
 
 <https://bio.tools/leb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203 ;
     sc:citation <https://doi.org/10.1007/978-3-642-00727-9_22> ;
@@ -270856,30 +279517,28 @@ Layered Enrichment Analysis of Pathways in R (leapR) a tool that carries out sta
 
 <https://bio.tools/lebibipqp> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ],
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1056" ;
-            sc:name "Database name" ;
-            sc:sameAs "http://edamontology.org/data_1056" ] ;
+            sc:additionalType "http://edamontology.org/data_1056" ;
+            sc:name "Database name" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ],
+            sc:additionalType "http://edamontology.org/data_3272" ;
+            sc:name "Species tree" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0857" ;
-            sc:name "Sequence search results" ;
-            sc:sameAs "http://edamontology.org/data_0857" ],
+            sc:additionalType "http://edamontology.org/data_0857" ;
+            sc:encodingFormat "http://edamontology.org/format_1333" ;
+            sc:name "Sequence search results" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3272" ;
-            sc:name "Species tree" ;
-            sc:sameAs "http://edamontology.org/data_3272" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1984" ;
+            sc:name "Sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0621 ;
@@ -270902,26 +279561,26 @@ Layered Enrichment Analysis of Pathways in R (leapR) a tool that carries out sta
 
 <https://bio.tools/ledpred> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1276" ;
-            sc:name "Nucleic acid features" ;
-            sc:sameAs "http://edamontology.org/data_1276" ],
+            sc:additionalType "http://edamontology.org/data_1276" ;
+            sc:encodingFormat "http://edamontology.org/format_3005" ;
+            sc:name "Nucleic acid features" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2854" ;
-            sc:name "Position-specific scoring matrix" ;
-            sc:sameAs "http://edamontology.org/data_2854" ] ;
+            sc:additionalType "http://edamontology.org/data_2854" ;
+            sc:encodingFormat "http://edamontology.org/format_3005" ;
+            sc:name "Position-specific scoring matrix" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ],
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Plot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1772" ;
-            sc:name "Score" ;
-            sc:sameAs "http://edamontology.org/data_1772" ],
+            sc:additionalType "http://edamontology.org/data_0950" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Mathematical model" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0950" ;
-            sc:name "Mathematical model" ;
-            sc:sameAs "http://edamontology.org/data_0950" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1772" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Score" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0602,
@@ -270941,7 +279600,7 @@ Layered Enrichment Analysis of Pathways in R (leapR) a tool that carries out sta
     biotools:primaryContact "Aitor Gonzalez" .
 
 <https://bio.tools/leehom> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_2269,
@@ -270956,22 +279615,20 @@ Layered Enrichment Analysis of Pathways in R (leapR) a tool that carries out sta
 
 <https://bio.tools/legiolist> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1026" ;
-            sc:name "Gene symbol" ;
-            sc:sameAs "http://edamontology.org/data_1026" ],
+            sc:additionalType "http://edamontology.org/data_1097" ;
+            sc:name "Sequence accession (nucleic acid)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1097" ;
-            sc:name "Sequence accession (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1097" ] ;
+            sc:additionalType "http://edamontology.org/data_1026" ;
+            sc:name "Gene symbol" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0916" ;
-            sc:name "Gene report" ;
-            sc:sameAs "http://edamontology.org/data_0916" ],
+            sc:additionalType "http://edamontology.org/data_0916" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Gene report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0916" ;
-            sc:name "Gene report" ;
-            sc:sameAs "http://edamontology.org/data_0916" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0916" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Gene report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0621 ;
     sc:citation "pubmed:7704253" ;
@@ -270987,8 +279644,32 @@ Layered Enrichment Analysis of Pathways in R (leapR) a tool that carries out sta
     biotools:primaryContact <http://orcid.org/0000-0002-6350-5001>,
         "Carmen Buchrieser" .
 
+<https://bio.tools/legui> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_3300,
+        edam:topic_3304,
+        edam:topic_3334,
+        edam:topic_3444,
+        edam:topic_3452 ;
+    sc:citation <https://doi.org/10.3389/FNINS.2021.769872>,
+        "pmcid:PMC8695687",
+        "pubmed:34955721" ;
+    sc:description "A Fast and Accurate Graphical User Interface for Automated Detection and Anatomical Localization of Intracranial Electrodes." ;
+    sc:featureList edam:operation_3435,
+        edam:operation_3443 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "LeGUI" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://github.com/Rolston-Lab/LeGUI/blob/main/LeGUI_InstallationGuide.pdf>,
+        <https://github.com/Rolston-Lab/LeGUI/blob/main/LeGUI_UserManual.pdf> ;
+    sc:url "https://github.com/Rolston-Lab/LeGUI" .
+
 <https://bio.tools/legumeip> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0203,
@@ -271011,7 +279692,7 @@ Layered Enrichment Analysis of Pathways in R (leapR) a tool that carries out sta
     biotools:primaryContact "The Samuel Roberts Noble Foundation" .
 
 <https://bio.tools/leish-exp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0121,
@@ -271031,7 +279712,7 @@ The Leishmania Exclusive Protein database (Leish-ExP) is a repository of protein
     sc:url "http://www.hpppi.iicb.res.in/Leish-ex" .
 
 <https://bio.tools/leitmotif> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -271048,7 +279729,7 @@ run scan Need to enter motif alignments before running scan.""" ;
     sc:url "https://leitmotif.irb.hr" .
 
 <https://bio.tools/lemarns> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_3489,
@@ -271070,7 +279751,7 @@ LeMaRns is an R package to set up, run and explore the outputs of the Length-bas
     sc:url "https://cran.r-project.org/web/packages/LeMaRns/index.html" .
 
 <https://bio.tools/lemmi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0637,
         edam:topic_0749,
@@ -271094,7 +279775,7 @@ Methods that completely or partially failed the LEMMI evaluation.""" ;
     sc:url "https://lemmi.ezlab.org" .
 
 <https://bio.tools/lemon-pdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0769,
@@ -271110,7 +279791,7 @@ Methods that completely or partially failed the LEMMI evaluation.""" ;
     sc:url "https://github.com/chopralab/lemon/" .
 
 <https://bio.tools/lemon-tree> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0203,
@@ -271130,14 +279811,12 @@ Methods that completely or partially failed the LEMMI evaluation.""" ;
 
 <https://bio.tools/lemone> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0928" ;
-            sc:name "Gene expression profile" ;
-            sc:sameAs "http://edamontology.org/data_0928" ] ;
+            sc:additionalType "http://edamontology.org/data_0928" ;
+            sc:name "Gene expression profile" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2984" ;
-            sc:name "Pathway or network report" ;
-            sc:sameAs "http://edamontology.org/data_2984" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2984" ;
+            sc:name "Pathway or network report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btq395> ;
@@ -271154,7 +279833,7 @@ Methods that completely or partially failed the LEMMI evaluation.""" ;
     biotools:primaryContact "Tom Michoel" .
 
 <https://bio.tools/lemons> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_2258,
@@ -271169,35 +279848,16 @@ Methods that completely or partially failed the LEMMI evaluation.""" ;
     sc:url "https://github.com/magarveylab/lemons" ;
     biotools:primaryContact "Nathan A. Magarvey" .
 
-<https://bio.tools/lentigo_maligna> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3305,
-        edam:topic_3382,
-        edam:topic_3404,
-        edam:topic_3421 ;
-    sc:citation <https://doi.org/10.1159/000502470>,
-        "pubmed:31639788" ;
-    sc:description """Evidence-Based Clinical Practice Guidelines for the Management of Patients with Lentigo Maligna.
-
-What are the most effective treatment/management interventions to improve outcomes in patients with lentigo maligna?.
-
-Complete surgical removal of lentigo maligna lesion with 5-10mm margins is the preferred management, when possible.
-
-Soyer, P, Meghna Kakani, Associate Professor Pascale Guitera FACD PhD, Clinical Professor Angela Hong, Scolyer, R, Stretch, J, Strutton, G, Cancer Council Australia Melanoma Guidelines Working Party.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'maligna', 'lentigo', 'Clinical question:Effective interventions improve outcomes lentigo maligna3F', 'lentigo maligna melanoma'""" ;
-    sc:name "lentigo maligna" ;
-    sc:url "https://wiki.cancer.org.au/australia/Clinical_question:Effective_interventions_to_improve_outcomes_in_lentigo_maligna%3F" .
-
 <https://bio.tools/leon> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2975" ;
-            sc:name "Nucleic acid sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_2975" ] ;
+            sc:additionalType "http://edamontology.org/data_2975" ;
+            sc:encodingFormat "http://edamontology.org/format_2182" ;
+            sc:name "Nucleic acid sequence (raw)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0955" ;
-            sc:name "Data index" ;
-            sc:sameAs "http://edamontology.org/data_0955" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0955" ;
+            sc:encodingFormat "http://edamontology.org/format_2333" ;
+            sc:name "Data index" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:citation <https://doi.org/10.1186/s12859-015-0709-7> ;
@@ -271215,7 +279875,7 @@ Soyer, P, Meghna Kakani, Associate Professor Pascale Guitera FACD PhD, Clinical
     biotools:primaryContact "Dominique Lavenier" .
 
 <https://bio.tools/lep-anchor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
@@ -271232,10 +279892,10 @@ Soyer, P, Meghna Kakani, Associate Professor Pascale Guitera FACD PhD, Clinical
 
 <https://bio.tools/lep-map3> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3494" ;
-            sc:name "DNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3494" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "DNA sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btx494>,
@@ -271252,14 +279912,14 @@ Soyer, P, Meghna Kakani, Associate Professor Pascale Guitera FACD PhD, Clinical
 
 <https://bio.tools/lepidodb> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Sequence alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0622 ;
     sc:description "Genomics of two major lepidopteran pests." ;
@@ -271276,22 +279936,20 @@ Soyer, P, Meghna Kakani, Associate Professor Pascale Guitera FACD PhD, Clinical
 
 <https://bio.tools/leproma> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1097" ;
-            sc:name "Sequence accession (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1097" ],
+            sc:additionalType "http://edamontology.org/data_1026" ;
+            sc:name "Gene symbol" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1026" ;
-            sc:name "Gene symbol" ;
-            sc:sameAs "http://edamontology.org/data_1026" ] ;
+            sc:additionalType "http://edamontology.org/data_1097" ;
+            sc:name "Sequence accession (nucleic acid)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0916" ;
-            sc:name "Gene report" ;
-            sc:sameAs "http://edamontology.org/data_0916" ],
+            sc:additionalType "http://edamontology.org/data_0916" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Gene report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0916" ;
-            sc:name "Gene report" ;
-            sc:sameAs "http://edamontology.org/data_0916" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0916" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Gene report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0621 ;
     sc:description "Mycobacterium leprae genome database." ;
@@ -271304,7 +279962,7 @@ Soyer, P, Meghna Kakani, Associate Professor Pascale Guitera FACD PhD, Clinical
     sc:url "http://genolist.pasteur.fr/Leproma/" .
 
 <https://bio.tools/les> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2533,
@@ -271324,7 +279982,7 @@ Soyer, P, Meghna Kakani, Associate Professor Pascale Guitera FACD PhD, Clinical
     biotools:primaryContact "Julian Gehring" .
 
 <https://bio.tools/leukemia-cancer-detection> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_2640,
@@ -271340,8 +279998,21 @@ Soyer, P, Meghna Kakani, Associate Professor Pascale Guitera FACD PhD, Clinical
     sc:url "https://www.mathworks.com/matlabcentral/fileexchange/64357-leukemia-cancer-detection" ;
     biotools:primaryContact "Vivek Singh" .
 
+<https://bio.tools/leukemiabd> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:description "leukemiaBD is a database of blood cancer that maintains gene expression datasets and biomarkers curated from public repositories and literature respectively. It contains following two modules for extracting data." ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "leukemiabd" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/leukemiabd/> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/leukemiabd/" .
+
 <https://bio.tools/leukmir> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0659,
@@ -271362,7 +280033,7 @@ Acute Lymphoblastic Leukemia (ALL) is one of the most common heterogeneous disea
     sc:url "http://tdb.ccmb.res.in/LeukmiR/" .
 
 <https://bio.tools/levelnet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
@@ -271383,7 +280054,7 @@ Acute Lymphoblastic Leukemia (ALL) is one of the most common heterogeneous disea
     sc:url "http://www.lcqb.upmc.fr/levelnet/" .
 
 <https://bio.tools/lever> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3385 ;
@@ -271399,7 +280070,7 @@ Acute Lymphoblastic Leukemia (ALL) is one of the most common heterogeneous disea
     biotools:primaryContact "Andrew R. Cohen" .
 
 <https://bio.tools/leviosam> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0108,
@@ -271418,7 +280089,7 @@ Use a VCF file containing alternative haplotype information to lift SAM/BAM alig
     sc:url "https://github.com/alshai/levioSAM" .
 
 <https://bio.tools/lexexp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0218,
@@ -271431,7 +280102,7 @@ Use a VCF file containing alternative haplotype information to lift SAM/BAM alig
     sc:url "https://sarkerlab.org/lexexp" .
 
 <https://bio.tools/lexops> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0632,
         edam:topic_3382 ;
@@ -271450,7 +280121,7 @@ LexOPS is an R package and shiny app for generating controlled word stimuli, for
     sc:url "https://JackEdTaylor.github.io/LexOPSdocs/" .
 
 <https://bio.tools/lfa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0081,
@@ -271473,7 +280144,7 @@ LexOPS is an R package and shiny app for generating controlled word stimuli, for
         "Wei Hao" .
 
 <https://bio.tools/lfc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_2269,
@@ -271491,7 +280162,7 @@ LexOPS is an R package and shiny app for generating controlled word stimuli, for
     biotools:primaryContact "Sekretariat" .
 
 <https://bio.tools/lfmm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0610,
@@ -271514,10 +280185,9 @@ LexOPS is an R package and shiny app for generating controlled word stimuli, for
 
 <https://bio.tools/lfpy> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0950" ;
-            sc:name "Mathematical model" ;
-            sc:sameAs "http://edamontology.org/data_0950" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0950" ;
+            sc:name "Mathematical model" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3304,
         edam:topic_3306,
@@ -271537,7 +280207,7 @@ LexOPS is an R package and shiny app for generating controlled word stimuli, for
     sc:url "http://lfpy.github.io/" .
 
 <https://bio.tools/lfqc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3071 ;
@@ -271552,7 +280222,7 @@ LexOPS is an R package and shiny app for generating controlled word stimuli, for
     biotools:primaryContact "Sanguthevar Rajasekaran" .
 
 <https://bio.tools/lfquant> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -271567,7 +280237,7 @@ LexOPS is an R package and shiny app for generating controlled word stimuli, for
         "Yunping Zhu" .
 
 <https://bio.tools/lfspro> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_2269,
@@ -271590,7 +280260,7 @@ TP53 germline mutation carrier estimation and cancer risk predictions.""" ;
     sc:url "https://bioinformatics.mdanderson.org/public-software/lfspro/" .
 
 <https://bio.tools/lga> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -271612,7 +280282,7 @@ TP53 germline mutation carrier estimation and cancer risk predictions.""" ;
     biotools:primaryContact "Adam Zemla" .
 
 <https://bio.tools/lgc-clustering> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:description "The code of Local Gravitation Clustering" ;
     sc:featureList edam:operation_3432,
@@ -271627,7 +280297,7 @@ TP53 germline mutation carrier estimation and cancer risk predictions.""" ;
     biotools:primaryContact "w qiang" .
 
 <https://bio.tools/lgepred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3321,
@@ -271639,27 +280309,25 @@ TP53 germline mutation carrier estimation and cancer risk predictions.""" ;
     sc:name "LGEpred" ;
     sc:operatingSystem "Linux" ;
     sc:softwareHelp <http://crdd.osdd.net/raghava//lgepred/help1.html> ;
-    sc:url "http://www.imtech.res.in/raghava/lgepred/" ;
+    sc:url "http://webs.iiitd.edu.in/raghava/lgepred/" ;
     biotools:primaryContact "Gajendra P.S. Raghava" .
 
 <https://bio.tools/lgicdb> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2797" ;
-            sc:name "Protein ID (LGICdb)" ;
-            sc:sameAs "http://edamontology.org/data_2797" ],
+            sc:additionalType "http://edamontology.org/data_2797" ;
+            sc:name "Protein ID (LGICdb)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2797" ;
-            sc:name "Protein ID (LGICdb)" ;
-            sc:sameAs "http://edamontology.org/data_2797" ] ;
+            sc:additionalType "http://edamontology.org/data_2797" ;
+            sc:name "Protein ID (LGICdb)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ],
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Protein features" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Protein features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0166,
         edam:topic_3293 ;
@@ -271675,7 +280343,7 @@ TP53 germline mutation carrier estimation and cancer risk predictions.""" ;
     biotools:primaryContact "Nicolas Le Novere" .
 
 <https://bio.tools/lgpr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0634,
@@ -271692,7 +280360,7 @@ R package for Longitudinal Gaussian Process Regression.""" ;
     sc:url "http://jtimonen.github.io/lgpr-usage" .
 
 <https://bio.tools/lgsfaligner> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0099 ;
@@ -271708,8 +280376,28 @@ R package for Longitudinal Gaussian Process Regression.""" ;
     sc:url "http://www.comp.nus.edu.sg/~bioinfo/LGSFAligner/index.htm" ;
     biotools:primaryContact "Jesper Jansson" .
 
+<https://bio.tools/lhspred> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3063,
+        edam:topic_3068,
+        edam:topic_3452 ;
+    sc:citation <https://doi.org/10.1016/J.BSPC.2022.103745>,
+        "pmcid:PMC9098195",
+        "pubmed:35582239" ;
+    sc:description "A web based application for predicting lung health severity." ;
+    sc:featureList edam:operation_3435,
+        edam:operation_3659 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "LHSPred" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://dibresources.jcbose.ac.in/ssaha4/lhspred" .
+
 <https://bio.tools/libcsam> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3168,
         edam:topic_3571 ;
@@ -271724,7 +280412,7 @@ R package for Longitudinal Gaussian Process Regression.""" ;
     biotools:primaryContact "Rodrigo Cánovas" .
 
 <https://bio.tools/libfbat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3053 ;
@@ -271738,7 +280426,7 @@ R package for Longitudinal Gaussian Process Regression.""" ;
     sc:url "http://pbil.univ-lyon1.fr/software/libfbat/" .
 
 <https://bio.tools/libfid> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0091 ;
     sc:author "Robert Homann" ;
@@ -271758,7 +280446,7 @@ R package for Longitudinal Gaussian Process Regression.""" ;
     sc:url "http://bibiserv.cebitec.uni-bielefeld.de/libfid" .
 
 <https://bio.tools/libinvent> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0209,
@@ -271781,7 +280469,7 @@ R package for Longitudinal Gaussian Process Regression.""" ;
     sc:url "https://github.com/MolecularAI/Lib-INVENT" .
 
 <https://bio.tools/libipaca> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -271796,7 +280484,7 @@ R package for Longitudinal Gaussian Process Regression.""" ;
     sc:url "https://github.com/kirchnerlab/libipaca" .
 
 <https://bio.tools/libmaus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3372 ;
     sc:description "A collection of data structures and algorithms. libmaus is a necessary component of Biobambam." ;
@@ -271811,14 +280499,14 @@ R package for Longitudinal Gaussian Process Regression.""" ;
 
 <https://bio.tools/libmgf> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ] ;
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:encodingFormat "http://edamontology.org/format_3652" ;
+            sc:name "Mass spectrometry data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:encodingFormat "http://edamontology.org/format_3652" ;
+            sc:name "Mass spectrometry data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0121,
@@ -271842,7 +280530,7 @@ R package for Longitudinal Gaussian Process Regression.""" ;
     sc:url "http://kirchnerlab.github.io/libmgf/" .
 
 <https://bio.tools/libmi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_0749,
@@ -271864,7 +280552,7 @@ LibMI is an histopathological image annotating library. This library is based on
     sc:url "https://gitlab.com/BioAI/libMI" .
 
 <https://bio.tools/libmolgrid> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3332,
@@ -271884,7 +280572,7 @@ libmolgrid is a C++ library with Python bindings that generates tensors from mol
     sc:url "http://gnina.github.io/libmolgrid" .
 
 <https://bio.tools/libmprc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -271895,7 +280583,7 @@ libmolgrid is a C++ library with Python bindings that generates tensors from mol
     sc:url "http://informatics.mayo.edu/svn/trunk/mprc/raams/doc/index.html" .
 
 <https://bio.tools/libmsym> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0154,
@@ -271915,7 +280603,7 @@ libmolgrid is a C++ library with Python bindings that generates tensors from mol
     biotools:primaryContact "Marcus Johansson" .
 
 <https://bio.tools/libomexmeta> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_3067,
@@ -271937,14 +280625,14 @@ libmolgrid is a C++ library with Python bindings that generates tensors from mol
 
 <https://bio.tools/libra> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ] ;
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_3655" ;
+            sc:name "Peptide identification" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_3747" ;
+            sc:name "Expression data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -271963,7 +280651,7 @@ libmolgrid is a C++ library with Python bindings that generates tensors from mol
     sc:url "http://tools.proteomecenter.org/Libra.php" .
 
 <https://bio.tools/libra_ligand> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_2275 ;
@@ -271978,14 +280666,14 @@ libmolgrid is a C++ library with Python bindings that generates tensors from mol
 
 <https://bio.tools/libralign> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1385" ;
-            sc:name "Sequence alignment (hybrid)" ;
-            sc:sameAs "http://edamontology.org/data_1385" ] ;
+            sc:additionalType "http://edamontology.org/data_1385" ;
+            sc:encodingFormat "http://edamontology.org/format_2924" ;
+            sc:name "Sequence alignment (hybrid)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1385" ;
-            sc:name "Sequence alignment (hybrid)" ;
-            sc:sameAs "http://edamontology.org/data_1385" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1385" ;
+            sc:encodingFormat "http://edamontology.org/format_2924" ;
+            sc:name "Sequence alignment (hybrid)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3070,
@@ -272011,7 +280699,7 @@ libmolgrid is a C++ library with Python bindings that generates tensors from mol
     biotools:primaryContact "Ben Stöver" .
 
 <https://bio.tools/libroadrunner> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2259,
         edam:topic_3070 ;
@@ -272026,7 +280714,7 @@ libmolgrid is a C++ library with Python bindings that generates tensors from mol
     sc:url "http://www.libroadrunner.org" .
 
 <https://bio.tools/libsbml> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2259,
         edam:topic_3071 ;
@@ -272041,7 +280729,7 @@ libmolgrid is a C++ library with Python bindings that generates tensors from mol
     sc:url "http://sbml.org/Software/libSBML" .
 
 <https://bio.tools/libxtc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0176,
         edam:topic_0736 ;
@@ -272057,7 +280745,7 @@ libmolgrid is a C++ library with Python bindings that generates tensors from mol
     biotools:primaryContact <https://orcid.org/0000-0002-4520-0351> .
 
 <https://bio.tools/lichee> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_2640,
@@ -272073,7 +280761,7 @@ libmolgrid is a C++ library with Python bindings that generates tensors from mol
     sc:url "http://viq854.github.io/lichee/" .
 
 <https://bio.tools/lichem> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0176,
         edam:topic_2269,
@@ -272092,7 +280780,7 @@ libmolgrid is a C++ library with Python bindings that generates tensors from mol
     biotools:primaryContact "G. Andrés Cisneros" .
 
 <https://bio.tools/liddell> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3070,
@@ -272110,7 +280798,7 @@ libmolgrid is a C++ library with Python bindings that generates tensors from mol
     biotools:primaryContact "Giuseppe Cardillo" .
 
 <https://bio.tools/liden> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_2885,
@@ -272123,7 +280811,7 @@ libmolgrid is a C++ library with Python bindings that generates tensors from mol
     sc:url "http://www.cs.cityu.edu.hk/~lwang/software/Link/index.htm" .
 
 <https://bio.tools/lifeexplorer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0081,
@@ -272141,24 +280829,30 @@ libmolgrid is a C++ library with Python bindings that generates tensors from mol
         <http://www.lifeexplorer.info/tutorials/> ;
     sc:url "http://www.lifeexplorer.info/" .
 
+<https://bio.tools/liferay> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:description "Liferay, Inc., is an open-source company that provides free documentation and paid professional service to users of its software.  Mainly focused on enterprise portal technology, the company has its headquarters in Diamond Bar, California, United States." ;
+    sc:name "Liferay" ;
+    sc:url "https://www.liferay.com/" .
+
 <https://bio.tools/lifewatchgreece> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1868" ;
-            sc:name "Taxon" ;
-            sc:sameAs "http://edamontology.org/data_1868" ],
+            sc:additionalType "http://edamontology.org/data_1869" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Organism identifier" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ],
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3549" ;
+            sc:name "Image" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1869" ;
-            sc:name "Organism identifier" ;
-            sc:sameAs "http://edamontology.org/data_1869" ] ;
+            sc:additionalType "http://edamontology.org/data_1868" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Taxon" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3546" ;
-            sc:name "Image metadata" ;
-            sc:sameAs "http://edamontology.org/data_3546" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3546" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Image metadata" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_3050,
         edam:topic_3382,
@@ -272181,7 +280875,7 @@ libmolgrid is a C++ library with Python bindings that generates tensors from mol
     biotools:primaryContact <http://orcid.org/0000-0002-6693-2033> .
 
 <https://bio.tools/liftoff> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
@@ -272198,7 +280892,7 @@ libmolgrid is a C++ library with Python bindings that generates tensors from mol
     sc:url "https://github.com/agshumate/Liftoff" .
 
 <https://bio.tools/liftover> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3071 ;
@@ -272214,7 +280908,7 @@ libmolgrid is a C++ library with Python bindings that generates tensors from mol
     sc:url "http://api.bioinfo.no/wsdl/LiftOverService.wsdl" .
 
 <https://bio.tools/liftpose3d> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_3304,
@@ -272236,7 +280930,7 @@ libmolgrid is a C++ library with Python bindings that generates tensors from mol
     sc:url "https://pypi.org/project/liftpose/" .
 
 <https://bio.tools/ligadvisor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0209,
@@ -272255,7 +280949,7 @@ libmolgrid is a C++ library with Python bindings that generates tensors from mol
     biotools:primaryContact <https://orcid.org/0000-0002-2474-0607> .
 
 <https://bio.tools/ligalign> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0097,
@@ -272276,28 +280970,8 @@ libmolgrid is a C++ library with Python bindings that generates tensors from mol
     sc:url "http://compbio.cs.toronto.edu/ligalign/" ;
     biotools:primaryContact "LigAlign support" .
 
-<https://bio.tools/ligand-docking> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0154,
-        edam:topic_0654,
-        edam:topic_2275,
-        edam:topic_2640,
-        edam:topic_3304 ;
-    sc:citation <https://doi.org/10.7287/PEERJ.PREPRINTS.1582V3> ;
-    sc:description """In silico homology modelling and identification of Tousled-like kinase 1 inhibitors for glioblastoma therapy via high throughput virtual screening protein-ligand docking.
-
-Background: Glioblastoma multiforme (GBM) is a grade IV brain tumor that arises from star-shaped glial cells supporting neural cells called astrocytes. The survival of GBM patients remains poor despite many specific molecular targets that have been developed and used for therapy. Tousled-like kinase 1 (TLK1), a serine-threonine kinase, was identified to be overexpressed in cancers such as GBM. TLK1 plays an important role in controlling chromosomal aggregation, cell survival and proliferation. In vitro studies suggested that TLK1 is a potential target for some cancers; hence, the identification of suitable molecular inhibitors for TLK1 is warranted as a new therapeutic agents in GBM.
-
-||| HOMEPAGE BROKEN!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'ligand.info database'""" ;
-    sc:featureList edam:operation_0477,
-        edam:operation_0482,
-        edam:operation_3436 ;
-    sc:name "ligand-docking" ;
-    sc:url "http://ligand.info" .
-
 <https://bio.tools/ligandrna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0099,
@@ -272316,7 +280990,7 @@ Background: Glioblastoma multiforme (GBM) is a grade IV brain tumor that arises
         "Kaja Milanowska - Server developer" .
 
 <https://bio.tools/ligap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0804,
@@ -272334,7 +281008,7 @@ Background: Glioblastoma multiforme (GBM) is a grade IV brain tumor that arises
     biotools:primaryContact "Tarmo Äijö" .
 
 <https://bio.tools/ligbuilder_v3> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0154,
@@ -272355,7 +281029,7 @@ With the rapid development of systems-based pharmacology and poly-pharmacology,
     sc:url "http://www.pkumdl.cn/ligbuilder3/" .
 
 <https://bio.tools/ligegfr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2275,
@@ -272373,7 +281047,7 @@ Predicting pIC50 and distinguishing hit compounds for ligands against human EGFR
     sc:url "https://ligegfr.vistec.ist" .
 
 <https://bio.tools/liger> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3170,
@@ -272395,7 +281069,7 @@ LIGER (liger) is a package for integrating and analyzing multiple single-cell da
     sc:url "https://github.com/MacoskoLab/liger" .
 
 <https://bio.tools/liggrep> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2275,
@@ -272415,14 +281089,14 @@ Jacob Durrant software July 7, 2020July 10, 2020.""" ;
     sc:url "http://durrantlab.com/liggrep/" .
 
 <https://bio.tools/light_attention_subcellular_localization> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:citation <https://doi.org/10.1101/2021.04.25.441334> ;
     sc:description "Deep learning architecture and web server which predicts protein subcellular localization. It is based on protein language models and pre-trained Transformers." ;
     sc:name "Light Attention" ;
     sc:url "https://github.com/HannesStark/protein-localization" .
 
 <https://bio.tools/lightassembler> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3168 ;
@@ -272435,7 +281109,7 @@ Jacob Durrant software July 7, 2020July 10, 2020.""" ;
     sc:url "https://github.com/SaraEl-Metwally/LightAssembler" .
 
 <https://bio.tools/lightbbb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3336,
@@ -272451,7 +281125,7 @@ Identification of blood-brain barrier (BBB) permeability of a compound is a majo
     sc:url "http://ssbio.cau.ac.kr/software/bbb" .
 
 <https://bio.tools/lightcud> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3063,
         edam:topic_3360,
@@ -272472,14 +281146,13 @@ The diagnosis of inflammatory bowel disease (IBD) and discrimination between the
 
 <https://bio.tools/lightdock> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2877" ;
-            sc:name "Protein complex" ;
-            sc:sameAs "http://edamontology.org/data_2877" ] ;
+            sc:additionalType "http://edamontology.org/data_2877" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein complex" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2877" ;
-            sc:name "Protein complex" ;
-            sc:sameAs "http://edamontology.org/data_2877" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2877" ;
+            sc:name "Protein complex" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0128 ;
     sc:citation "pubmed:28968719" ;
@@ -272499,7 +281172,7 @@ The framework is highly versatile, with many options that can be further develop
     biotools:primaryContact "Brian Jimenez" .
 
 <https://bio.tools/lighter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0654,
@@ -272517,10 +281190,10 @@ The framework is highly versatile, with many options that can be further develop
 
 <https://bio.tools/lightstringgraph> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3497" ;
-            sc:name "DNA sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_3497" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3497" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "DNA sequence (raw)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196 ;
     sc:citation <https://doi.org/10.1007/978-3-662-44753-6_23> ;
@@ -272538,7 +281211,7 @@ The framework is highly versatile, with many options that can be further develop
         "Paola Bonizzoni" .
 
 <https://bio.tools/ligmate> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0209,
         edam:topic_3343,
@@ -272553,7 +281226,7 @@ Ligand-similarity-based virtual screening is one of the most applicable computer
     sc:url "http://cao.labshare.cn/ligmate/" .
 
 <https://bio.tools/ligmerge> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0209,
         edam:topic_2275,
@@ -272569,13 +281242,39 @@ Ligand-similarity-based virtual screening is one of the most applicable computer
     sc:url "http://nbcr.ucsd.edu/data/sw/hosted/ligmerge/" ;
     biotools:primaryContact "Steffen Lindert" .
 
+<https://bio.tools/ligningraphs> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0593,
+        edam:topic_3068,
+        edam:topic_3315 ;
+    sc:citation <https://doi.org/10.1186/S13321-022-00627-2>,
+        "pmcid:PMC9261032",
+        "pubmed:35794646" ;
+    sc:description "LigninGraphs is an open-source software package in Python to generate feasible lignin structures." ;
+    sc:featureList edam:operation_0320,
+        edam:operation_0337,
+        edam:operation_0479 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "LigninGraphs" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://ligningraphs.readthedocs.io/en/latest> ;
+    sc:url "https://github.com/VlachosGroup/ligningraphs" .
+
 <https://bio.tools/ligplot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_2275,
         edam:topic_2814 ;
-    sc:citation "pubmed:7630882" ;
+    sc:citation <https://doi.org/10.1021/ci200227u>,
+        <https://doi.org/10.1093/protein/8.2.127>,
+        "pubmed:21919503",
+        "pubmed:7630882" ;
     sc:description "Program which plots schematic diagrams of protein-ligand interactions." ;
     sc:featureList edam:operation_0482 ;
     sc:name "LIGPLOT" ;
@@ -272589,14 +281288,12 @@ Ligand-similarity-based virtual screening is one of the most applicable computer
 
 <https://bio.tools/ligsearch> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:name "Protein sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1566" ;
-            sc:name "Protein-ligand interaction report" ;
-            sc:sameAs "http://edamontology.org/data_1566" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1566" ;
+            sc:name "Protein-ligand interaction report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_2814 ;
@@ -272618,7 +281315,7 @@ Ligand-similarity-based virtual screening is one of the most applicable computer
     biotools:primaryContact "Roman Laskowski" .
 
 <https://bio.tools/ligsift> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0154,
@@ -272632,7 +281329,7 @@ Ligand-similarity-based virtual screening is one of the most applicable computer
     sc:url "http://cssb.biology.gatech.edu/LIGSIFT" .
 
 <https://bio.tools/ligtbm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0209,
@@ -272648,7 +281345,7 @@ Ligand-similarity-based virtual screening is one of the most applicable computer
     sc:url "https://ligtbm.cluspro.org/" .
 
 <https://bio.tools/ligtmap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0209,
@@ -272669,13 +281366,13 @@ Ligand-similarity-based virtual screening is one of the most applicable computer
     sc:url "https://cbbio.online/LigTMap" .
 
 <https://bio.tools/like_a_diva> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "With Like A Diva this year, don't compromise on style with our Indian salwar kameez, lehenga choli, Indian sarees, palazzo suits, and designer sharara suits. Experience a comfortable and warm experience with our sharara suits. We also have a selection of ready-to-wear ethnic dresses, making it simple to update your wardrobe for the new season." ;
     sc:name "Like A Diva" ;
     sc:url "https://www.likeadiva.com/" .
 
 <https://bio.tools/likelihood-ratio-test-changes-homeolog-expression-bias> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0203,
@@ -272692,7 +281389,7 @@ Ligand-similarity-based virtual screening is one of the most applicable computer
     biotools:primaryContact "Ronald D Smith" .
 
 <https://bio.tools/likelihoodprofiler> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2259,
@@ -272712,7 +281409,7 @@ LikelihoodProfiler is a package for identifiability analysis and confidence inte
     sc:url "https://github.com/insysbio/LikelihoodProfiler.jl" .
 
 <https://bio.tools/lillies> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_2640,
@@ -272729,14 +281426,13 @@ LikelihoodProfiler is a package for identifiability analysis and confidence inte
 
 <https://bio.tools/limani> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ] ;
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_2333" ;
+            sc:name "Image" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0920" ;
-            sc:name "Genotype/phenotype report" ;
-            sc:sameAs "http://edamontology.org/data_0920" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0920" ;
+            sc:name "Genotype/phenotype report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3382 ;
     sc:citation <https://doi.org/10.1111/j.1365-313X.2011.04803.x> ;
@@ -272753,7 +281449,7 @@ LikelihoodProfiler is a package for identifiability analysis and confidence inte
     biotools:primaryContact "Stijn Dhondt" .
 
 <https://bio.tools/lime> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0637,
         edam:topic_3168,
@@ -272774,7 +281470,7 @@ LiME is a novel lightweight alignment-free and assembly-free framework for metag
     sc:url "https://github.com/veronicaguerrini/LiME" .
 
 <https://bio.tools/limetr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3305,
@@ -272791,7 +281487,7 @@ Linear Mixed Effects Model with Trimming.""" ;
     sc:url "https://github.com/zhengp0/limetr" .
 
 <https://bio.tools/limix> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0622 ;
@@ -272806,14 +281502,14 @@ Linear Mixed Effects Model with Trimming.""" ;
 
 <https://bio.tools/limma> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Gene expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ] ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Gene expression data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3047,
@@ -272833,34 +281529,20 @@ Linear Mixed Effects Model with Trimming.""" ;
     sc:url "http://bioconductor.org/packages/release/bioc/html/limma.html" ;
     biotools:primaryContact <http://orcid.org/0000-0001-9221-2892> .
 
-<https://bio.tools/limma_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0203,
-        edam:topic_3295,
-        edam:topic_3518 ;
-    sc:citation <https://doi.org/10.1089/CMB.2019.0125>,
-        "pubmed:31460783" ;
-    sc:description "> VERY_LOW CONFIDENCE! | > NAME EQUAL TO (PUB. DIFFERENT) bio.tools/limma | > COMMON LINK WITH (PUB. & NAME DIFFERENT) bio.tools/limma (BIOCONDUCTOR.ORG/packages/release/bioc/html/limma.html) | > CORRECT NAME OF TOOL COULD ALSO BE 'DMGs', 'GBMs', 'GBM', 'ALX1' | Construction of Novel DNA Methylation-Based Prognostic Model to Predict Survival in Glioblastoma | Linear Models for Microarray Data | Data analysis, linear models and differential expression for microarray data" ;
-    sc:featureList edam:operation_2495,
-        edam:operation_3501,
-        edam:operation_3659 ;
-    sc:license "GPL-2.0" ;
-    sc:name "limma_autogenerated" ;
-    sc:url "https://bioconductor.org/packages/release/bioc/html/limma.html" .
-
 <https://bio.tools/limmagui> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Gene expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ] ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Gene expression data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ],
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Plot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0091,
@@ -272883,18 +281565,18 @@ Linear Mixed Effects Model with Trimming.""" ;
 
 <https://bio.tools/limmarp> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2082" ;
-            sc:name "Matrix" ;
-            sc:sameAs "http://edamontology.org/data_2082" ],
+            sc:additionalType "http://edamontology.org/data_2082" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Matrix" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Gene expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ] ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Gene expression data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1669" ;
-            sc:name "P-value" ;
-            sc:sameAs "http://edamontology.org/data_1669" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1669" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "P-value" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0121,
@@ -272915,7 +281597,7 @@ Linear Mixed Effects Model with Trimming.""" ;
     biotools:primaryContact <http://orcid.org/0000-0002-9708-6722> .
 
 <https://bio.tools/limonada> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0153,
         edam:topic_0176,
@@ -272935,7 +281617,7 @@ Linear Mixed Effects Model with Trimming.""" ;
     biotools:primaryContact <https://orcid.org/0000-0002-9252-2396> .
 
 <https://bio.tools/lims_tools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2885 ;
@@ -272947,7 +281629,7 @@ Linear Mixed Effects Model with Trimming.""" ;
     sc:url "http://www.ikmb.uni-kiel.de/resources/download-tools/software/software-download-institute-clinical-molecular-biology#limstools" .
 
 <https://bio.tools/limtox> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2840,
         edam:topic_3360,
@@ -272968,7 +281650,7 @@ Linear Mixed Effects Model with Trimming.""" ;
     biotools:primaryContact "Andrés Cañada Pallarés" .
 
 <https://bio.tools/lin_f9> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0209,
         edam:topic_2275,
@@ -272988,7 +281670,7 @@ Linear Mixed Effects Model with Trimming.""" ;
     sc:url "https://yzhang.hpc.nyu.edu/Lin_F9/" .
 
 <https://bio.tools/linadmix> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0654,
@@ -273005,7 +281687,7 @@ Linear Mixed Effects Model with Trimming.""" ;
     sc:url "https://github.com/swidler/linadmix" .
 
 <https://bio.tools/linc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -273025,7 +281707,7 @@ Linear Mixed Effects Model with Trimming.""" ;
     biotools:primaryContact "Manuel Goepferich" .
 
 <https://bio.tools/linc2function> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -273041,7 +281723,7 @@ Linear Mixed Effects Model with Trimming.""" ;
     sc:url "https://bioinformaticslab.erc.monash.edu/linc2function" .
 
 <https://bio.tools/lincrna_predict> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0659 ;
     sc:citation <https://doi.org/10.1186/s12859-017-1922-3> ;
@@ -273055,7 +281737,7 @@ Linear Mixed Effects Model with Trimming.""" ;
     biotools:primaryContact "Ning Yu" .
 
 <https://bio.tools/lincs_canvas_browser> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0202,
         edam:topic_0203,
@@ -273080,7 +281762,7 @@ Linear Mixed Effects Model with Trimming.""" ;
     biotools:primaryContact "Avi Ma'ayan" .
 
 <https://bio.tools/lincsnp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_2815,
@@ -273098,8 +281780,31 @@ Linear Mixed Effects Model with Trimming.""" ;
     sc:url "http://210.46.80.146/lincsnp/" ;
     biotools:primaryContact "Support" .
 
+<https://bio.tools/linda> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0157,
+        edam:topic_3168,
+        edam:topic_3500,
+        edam:topic_3697 ;
+    sc:citation <https://doi.org/10.1186/S13059-022-02655-5>,
+        "pmcid:PMC9012043",
+        "pubmed:35421994" ;
+    sc:description "Linear models for differential abundance analysis of microbiome compositional data." ;
+    sc:featureList edam:operation_3435,
+        edam:operation_3557,
+        edam:operation_3659 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "LinDA" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://cran.r-project.org/web/packages/MicrobiomeStat/MicrobiomeStat.pdf> ;
+    sc:url "https://github.com/zhouhj1994/LinDA" .
+
 <https://bio.tools/lindeconseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2229,
@@ -273120,10 +281825,9 @@ Cell Type Deconvolution using gene expression data for bulk samples.""" ;
 
 <https://bio.tools/lindna> a sc:SoftwareApplication ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1278" ;
-            sc:name "Genetic map" ;
-            sc:sameAs "http://edamontology.org/data_1278" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1278" ;
+            sc:name "Genetic map" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0092 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -273152,8 +281856,28 @@ Cell Type Deconvolution using gene expression data for bulk samples.""" ;
     sc:softwareVersion "r6" ;
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/lindna.html" .
 
+<https://bio.tools/lineage> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0099,
+        edam:topic_0199,
+        edam:topic_3170,
+        edam:topic_3500,
+        edam:topic_3676 ;
+    sc:citation <https://doi.org/10.1073/PNAS.2119767119>,
+        "pmcid:PMC8812554",
+        "pubmed:35086932" ;
+    sc:description "A lineage analysis algorithm called Label-free IdeNtification of Endogenous informAtive sinGle cell mitochondrial RNA mutation for lineage analysis and clonal Evolution (LINEAGE) by integrating the low cross-entropy subspaces identification with a consensus clustering method." ;
+    sc:featureList edam:operation_0314 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "lineage" ;
+    sc:operatingSystem "Mac",
+        "Windows" ;
+    sc:url "https://github.com/songjiajia2018/LINEAGE" .
+
 <https://bio.tools/lineagepulse> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2229,
@@ -273172,7 +281896,7 @@ Cell Type Deconvolution using gene expression data for bulk samples.""" ;
     biotools:primaryContact "David S Fischer" .
 
 <https://bio.tools/lineagespot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:citation <https://doi.org/10.1101/2021.03.17.21252673> ;
     sc:description "Lineagespot is a framework written in R, and aims to identify and assign different SARS-CoV-2 lineages based on a single variant file (i.e., variant calling format)." ;
     sc:isAccessibleForFree true ;
@@ -273183,7 +281907,7 @@ Cell Type Deconvolution using gene expression data for bulk samples.""" ;
     biotools:primaryContact <https://orcid.org/0000-0002-0222-4273> .
 
 <https://bio.tools/linearpartition> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0659,
@@ -273205,7 +281929,7 @@ This repository contains the C++ source code for the LinearPartition project, th
     sc:url "http://linearfold.org/partition" .
 
 <https://bio.tools/linesink-maker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3068 ;
     sc:citation <https://doi.org/10.1111/GWAT.13095>,
@@ -273218,7 +281942,7 @@ This repository contains the C++ source code for the LinearPartition project, th
     biotools:primaryContact "Andrew T. Leaf" .
 
 <https://bio.tools/linflow> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0194,
@@ -273238,7 +281962,7 @@ This repository contains the C++ source code for the LinearPartition project, th
     sc:url "https://code.vt.edu/linbaseproject/LINflow/" .
 
 <https://bio.tools/linkage> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3053 ;
@@ -273254,7 +281978,7 @@ This repository contains the C++ source code for the LinearPartition project, th
     sc:url "http://www.jurgott.org/linkage/LinkagePC.html" .
 
 <https://bio.tools/linkagemapview> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0092,
@@ -273274,7 +281998,7 @@ This repository contains the C++ source code for the LinearPartition project, th
     biotools:primaryContact "Lisa A Ouellette" .
 
 <https://bio.tools/linkcomm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2259 ;
@@ -273289,7 +282013,7 @@ This repository contains the C++ source code for the LinearPartition project, th
     sc:url "https://cran.r-project.org/web/packages/linkcomm/index.html" .
 
 <https://bio.tools/linkdatagen> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3325,
@@ -273311,7 +282035,7 @@ This repository contains the C++ source code for the LinearPartition project, th
     biotools:primaryContact "Melanie Bahlo" .
 
 <https://bio.tools/linkedimm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0089,
@@ -273336,14 +282060,14 @@ This repository contains the C++ source code for the LinearPartition project, th
 
 <https://bio.tools/linkedpipes_etl> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2093" ;
-            sc:name "Data reference" ;
-            sc:sameAs "http://edamontology.org/data_2093" ] ;
+            sc:additionalType "http://edamontology.org/data_2093" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Data reference" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2093" ;
-            sc:name "Data reference" ;
-            sc:sameAs "http://edamontology.org/data_2093" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2093" ;
+            sc:encodingFormat "http://edamontology.org/format_3750" ;
+            sc:name "Data reference" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Workbench",
         "Workflow" ;
@@ -273369,8 +282093,39 @@ This repository contains the C++ source code for the LinearPartition project, th
     sc:url "https://etl.linkedpipes.com/" ;
     biotools:primaryContact <https://orcid.org/0000-0001-7234-3051> .
 
+<https://bio.tools/linkehr> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Desktop application" ;
+    sc:description """LinkEHR is a set of tools that enables the semantic interoperability of your data by:
+
+Creating clinical information models (archetypes)
+Transforming clinical data into standards such as openEHR, HL7 CDA, or ISO 13606""" ;
+    sc:featureList edam:operation_2429,
+        edam:operation_2430 ;
+    sc:isAccessibleForFree true ;
+    sc:name "LinkEHR" ;
+    sc:url "https://linkehr.veratech.es/" .
+
+<https://bio.tools/linkexplorer> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1093/bioinformatics/btac068>,
+        "pubmed:35139158" ;
+    sc:description "Predicting, explaining and exploring links in large biomedical knowledge graphs." ;
+    sc:featureList edam:operation_2422,
+        edam:operation_3359,
+        edam:operation_3436 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "LinkExplorer" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/OpenBioLink/Explorer" .
+
 <https://bio.tools/linkmfex> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0102,
@@ -273383,7 +282138,7 @@ This repository contains the C++ source code for the LinearPartition project, th
     sc:url "http://www.uoguelph.ca/~rdanzman/software.htm" .
 
 <https://bio.tools/linkprep> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0625 ;
@@ -273398,7 +282153,7 @@ This repository contains the C++ source code for the LinearPartition project, th
     sc:url "http://bioinf.wehi.edu.au/software/index.html" .
 
 <https://bio.tools/links> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
@@ -273417,7 +282172,7 @@ This repository contains the C++ source code for the LinearPartition project, th
     biotools:primaryContact "Rene L. Warren" .
 
 <https://bio.tools/linksnps> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2885,
         edam:topic_3053,
@@ -273435,7 +282190,7 @@ This repository contains the C++ source code for the LinearPartition project, th
         "Hideki Innan" .
 
 <https://bio.tools/linnorm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3168,
@@ -273455,7 +282210,7 @@ This repository contains the C++ source code for the LinearPartition project, th
     biotools:primaryContact "Ken Shun Hang Yip" .
 
 <https://bio.tools/linps> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
@@ -273479,8 +282234,28 @@ This repository contains the C++ source code for the LinearPartition project, th
     sc:softwareHelp <https://bcmslab.shinyapps.io/LINPSAPP/> ;
     sc:url "https://bcmslab.shinyapps.io/LINPSAPP/" .
 
+<https://bio.tools/lint-web> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0121,
+        edam:topic_0153,
+        edam:topic_3172,
+        edam:topic_3308,
+        edam:topic_3407 ;
+    sc:citation <https://doi.org/10.1002/SMTD.202100206>,
+        "pubmed:34928054" ;
+    sc:description "A lipidomic data processing website aims to provide users a friendly pipeline for statistical analyses and lipidomic data mining." ;
+    sc:featureList edam:operation_3928,
+        edam:operation_3935 ;
+    sc:isAccessibleForFree true ;
+    sc:name "LINT-web" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://www.lintwebomics.info/" .
+
 <https://bio.tools/linus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3070,
@@ -273494,7 +282269,7 @@ This repository contains the C++ source code for the LinearPartition project, th
     sc:url "https://imb-dev.gitlab.io/linus-manuscript/" .
 
 <https://bio.tools/lionessR> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0602,
@@ -273522,8 +282297,9 @@ LIONESS, or Linear Interpolation to Obtain Network Estimates for Single Samples,
     sc:url "https://github.com/kuijjerlab/lionessR" .
 
 <https://bio.tools/lionirs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
-    sc:additionalType "Library" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library",
+        "Suite" ;
     sc:applicationSubCategory edam:topic_0593,
         edam:topic_3300,
         edam:topic_3384 ;
@@ -273532,12 +282308,16 @@ LIONESS, or Linear Interpolation to Obtain Network Estimates for Single Samples,
     sc:featureList edam:operation_0337,
         edam:operation_3219,
         edam:operation_3435 ;
+    sc:isAccessibleForFree true ;
     sc:license "GPL-3.0" ;
     sc:name "LIONirs" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
     sc:url "https://github.com/JulieTremblay3/LIONirs" .
 
 <https://bio.tools/lipid_maps> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0153,
@@ -273560,10 +282340,10 @@ LIONESS, or Linear Interpolation to Obtain Network Estimates for Single Samples,
 
 <https://bio.tools/lipidcreator> a sc:SoftwareApplication ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2812" ;
-            sc:name "Lipid identifier" ;
-            sc:sameAs "http://edamontology.org/data_2812" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2812" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Lipid identifier" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0153 ;
     sc:description "LipidCreator is a kick-off tool for targeted lipidomics providing both precursor / fragment mass transition list and a spectral library of MS2 spectra for lipids." ;
@@ -273572,7 +282352,7 @@ LIONESS, or Linear Interpolation to Obtain Network Estimates for Single Samples,
     sc:url "http://lifs.isas.de/index.php/lipidcreator" .
 
 <https://bio.tools/lipidcreator_skyline> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0153,
         edam:topic_0154,
@@ -273593,8 +282373,31 @@ LipidCreator_HumanPlatelet_application.""" ;
     sc:name "LipidCreator_skyline" ;
     sc:url "https://panoramaweb.org/lipidcreator.url" .
 
+<https://bio.tools/lipiddyn> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0153,
+        edam:topic_0176,
+        edam:topic_0736,
+        edam:topic_0820,
+        edam:topic_2640 ;
+    sc:citation <https://doi.org/10.1016/j.csbj.2022.06.054>,
+        "pmcid:PMC9283888",
+        "pubmed:35860415" ;
+    sc:description "Unraveling membrane properties at the organelle-level with LipidDyn." ;
+    sc:featureList edam:operation_0244,
+        edam:operation_2476,
+        edam:operation_2489 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "LipidDyn" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/ELELAB/LipidDyn" .
+
 <https://bio.tools/lipidex> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Workbench" ;
     sc:applicationSubCategory edam:topic_0153,
@@ -273615,7 +282418,7 @@ LipidCreator_HumanPlatelet_application.""" ;
     sc:url "https://github.com/coongroup/LipiDex" .
 
 <https://bio.tools/lipidfinder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0153,
@@ -273640,7 +282443,7 @@ LipidFinder is an open-source Python workflow which searches a number of differe
     sc:url "http://lipidmaps.org/resources/tools/lipidfinder" .
 
 <https://bio.tools/lipidisease> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0153,
         edam:topic_0218,
@@ -273663,7 +282466,7 @@ LipidFinder is an open-source Python workflow which searches a number of differe
     sc:url "http://cbdm-01.zdv.uni-mainz.de:3838/piyusmor/LipiDisease/" .
 
 <https://bio.tools/lipidlynxx> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0121,
@@ -273686,7 +282489,7 @@ A robust and accurate converter can only be achieved by community-wide collabora
     sc:url "https://github.com/SysMedOs/LipidLynxX" .
 
 <https://bio.tools/lipidomer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0153,
         edam:topic_0769,
@@ -273705,7 +282508,7 @@ Integrative Visualizations of the Lipidome.""" ;
     sc:url "https://lipidomer.org" .
 
 <https://bio.tools/lipidomics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0153,
         edam:topic_3360,
@@ -273727,8 +282530,29 @@ Welcome to the Lipidomics Standard Initiative (LSI)""" ;
     sc:name "lipidomics" ;
     sc:url "https://lipidomics-standards-initiative.org/" .
 
+<https://bio.tools/lipidone> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Desktop application",
+        "Workbench" ;
+    sc:applicationSubCategory edam:topic_0153,
+        edam:topic_0196,
+        edam:topic_0203,
+        edam:topic_0821,
+        edam:topic_3047 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAB867>,
+        "pubmed:34971364" ;
+    sc:description "LipidOne is a freely available and easy-to-use software to discover the deeper features of building blocks in a lipidomic dataset." ;
+    sc:featureList edam:operation_0310,
+        edam:operation_3463,
+        edam:operation_3799 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "LipidOne" ;
+    sc:operatingSystem "Windows" ;
+    sc:url "http://www.dcbb.unipg.it/LipidOne" .
+
 <https://bio.tools/lipidr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0153,
@@ -273751,7 +282575,7 @@ lipidr: Data Mining and Analysis of Lipidomics Datasets in R.""" ;
     sc:url "https://www.lipidr.org/" .
 
 <https://bio.tools/lipidsig> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0153,
         edam:topic_0625,
@@ -273768,7 +282592,7 @@ lipidr: Data Mining and Analysis of Lipidomics Datasets in R.""" ;
     biotools:primaryContact <https://orcid.org/0000-0002-1229-4857> .
 
 <https://bio.tools/lipidsuite> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0153,
         edam:topic_0769,
@@ -273786,7 +282610,7 @@ lipidr: Data Mining and Analysis of Lipidomics Datasets in R.""" ;
     sc:url "http://suite.lipidr.org" .
 
 <https://bio.tools/lipidwrapper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Library" ;
     sc:applicationSubCategory edam:topic_0166,
@@ -273809,18 +282633,18 @@ lipidr: Data Mining and Analysis of Lipidomics Datasets in R.""" ;
 
 <https://bio.tools/lipidxplorer> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ],
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3654" ;
+            sc:name "Mass spectrometry spectra" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ] ;
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:encodingFormat "http://edamontology.org/format_3654" ;
+            sc:name "Mass spectrometry data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:encodingFormat "http://edamontology.org/format_3620" ;
+            sc:name "Mass spectrometry data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0153,
         edam:topic_3172 ;
@@ -273838,8 +282662,28 @@ lipidr: Data Mining and Analysis of Lipidomics Datasets in R.""" ;
     sc:softwareVersion "1.2.8" ;
     sc:url "https://lifs.isas.de/wiki" .
 
+<https://bio.tools/liplacet> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Plug-in" ;
+    sc:applicationSubCategory edam:topic_0108,
+        edam:topic_0780,
+        edam:topic_2229,
+        edam:topic_3382,
+        edam:topic_3520 ;
+    sc:citation <https://doi.org/10.1093/PLPHYS/KIAB530>,
+        "pmcid:PMC8825436",
+        "pubmed:34791452" ;
+    sc:description "ImageJ Plugin for manual cell lineage tracking." ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "LiPlaCeT" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/paul-hernandez-herrera/LiPlaCeT" .
+
 <https://bio.tools/lipo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3301,
@@ -273855,7 +282699,7 @@ lipidr: Data Mining and Analysis of Lipidomics Datasets in R.""" ;
     sc:url "http://services.cbu.uib.no/tools/lipo" .
 
 <https://bio.tools/lipoddx> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3325,
@@ -273873,14 +282717,14 @@ LIPO-DDx® is a mobile app based on a personal algorithm developed by Prof. Davi
 
 <https://bio.tools/lipop> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2955" ;
-            sc:name "Sequence report" ;
-            sc:sameAs "http://edamontology.org/data_2955" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2955" ;
+            sc:encodingFormat "http://edamontology.org/format_2305" ;
+            sc:name "Sequence report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application",
         "Web service" ;
@@ -273902,7 +282746,7 @@ LIPO-DDx® is a mobile app based on a personal algorithm developed by Prof. Davi
     biotools:primaryContact "Agnieszka S. Juncker" .
 
 <https://bio.tools/liposome-analysis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -273919,7 +282763,7 @@ LIPO-DDx® is a mobile app based on a personal algorithm developed by Prof. Davi
     biotools:primaryContact "Maxim" .
 
 <https://bio.tools/liposvm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0154,
@@ -273943,7 +282787,7 @@ The file named Encoding schemes contains code for different encoding schemes: PS
     sc:url "https://github.com/stars20180811/LipoSVM" .
 
 <https://bio.tools/liputils> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0153,
@@ -273965,7 +282809,7 @@ A small Python package to manipulate complex lipids.""" ;
     sc:url "https://github.com/Stemanz/liputils/" .
 
 <https://bio.tools/lipydomics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0153,
@@ -273986,7 +282830,7 @@ lipydomics is a Python package for performing standard lipidomics analysis proto
     sc:url "https://github.com/dylanhross/lipydomics" .
 
 <https://bio.tools/lipyphilic> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0153,
         edam:topic_0176,
@@ -274004,7 +282848,7 @@ lipydomics is a Python package for performing standard lipidomics analysis proto
     biotools:primaryContact <https://orcid.org/0000-0003-1028-4804> .
 
 <https://bio.tools/liqa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0203,
@@ -274026,7 +282870,7 @@ The input of LIQA is long-read RNA-seq read data in BAM format together with a r
     sc:url "https://github.com/WGLab/LIQA" .
 
 <https://bio.tools/liquid> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0202,
@@ -274043,7 +282887,7 @@ The input of LIQA is long-read RNA-seq read data in BAM format together with a r
     biotools:primaryContact "Yusuf Tanrikulu" .
 
 <https://bio.tools/liquidassociation> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0097,
@@ -274063,7 +282907,7 @@ The input of LIQA is long-read RNA-seq read data in BAM format together with a r
     biotools:primaryContact "Yen-Yi Ho" .
 
 <https://bio.tools/lira> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_2269,
@@ -274084,8 +282928,34 @@ This software seeks to improve the process of analyzing mouse lung slides for Tu
     sc:name "LIRA" ;
     sc:url "https://Github.com/TB-imaging/LIRA" .
 
+<https://bio.tools/lirbase> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0621,
+        edam:topic_0659,
+        edam:topic_0780,
+        edam:topic_3500,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAB912>,
+        "pmcid:PMC8728187",
+        "pubmed:34643715" ;
+    sc:description "A comprehensive database of long inverted repeats in eukaryotic genomes." ;
+    sc:featureList edam:operation_0282,
+        edam:operation_0502,
+        edam:operation_3208,
+        edam:operation_3223,
+        edam:operation_3431 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "LIRBase" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://venyao.xyz/lirbase/" .
+
 <https://bio.tools/lirical> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3298,
@@ -274106,7 +282976,7 @@ LIRICAL is designed to provide clincially interpretable computational analysis o
     sc:url "https://github.com/TheJacksonLaboratory/LIRICAL" .
 
 <https://bio.tools/lis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0602,
@@ -274126,7 +282996,7 @@ LIRICAL is designed to provide clincially interpretable computational analysis o
     biotools:primaryContact "Contact form" .
 
 <https://bio.tools/lisa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0749,
@@ -274148,7 +283018,7 @@ Web version and documentation is hosted at http://lisa.cistrome.org. For large s
     sc:url "http://lisa.cistrome.org/" .
 
 <https://bio.tools/lise> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0154,
@@ -274170,7 +283040,7 @@ Web version and documentation is hosted at http://lisa.cistrome.org. For large s
     biotools:primaryContact "LISE Support" .
 
 <https://bio.tools/list-s2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0199,
@@ -274192,7 +283062,7 @@ LIST-S2 predicts the deleteriousness of amino acid mutations in protein sequence
     sc:url "https://list-s2.msl.ubc.ca/" .
 
 <https://bio.tools/list_ontologies> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_3071 ;
@@ -274206,43 +283076,16 @@ LIST-S2 predicts the deleteriousness of amino acid mutations in protein sequence
     sc:softwareVersion "1" ;
     sc:url "https://confluence.crbs.ucsd.edu/display/NIF/OntoQuestMain" .
 
-<https://bio.tools/list_people_brain_tumors> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_2640,
-        edam:topic_3304,
-        edam:topic_3334,
-        edam:topic_3384,
-        edam:topic_3421 ;
-    sc:citation <https://doi.org/10.1080/02688697.2019.1701629>,
-        "pubmed:31852258" ;
-    sc:description """Interesting different survival status of musicians with malignant cerebral tumors.
-
-List of people with brain tumors.
-
-From Wikipedia, the free encyclopedia.
-
-Jump to navigation Jump to search.
-
-This is a dynamic list and may never be able to satisfy particular standards for completeness. You can help by expanding it with reliably sourced entries.
-
-A brain tumor is an abnormal growth of cells within the brain or inside the skull, and can be cancerous (malignant) or non-cancerous (benign). Just over half of all primary brain tumors are malignant; the rest are benign, though they may still be life-threatening. In the United States in 2000, survivors of benign primary brain tumors outnumbered those who had cancerous primary brain tumors by approximately 4:1. Metastatic brain cancer is over six times more common than primary brain cancer, as it occurs in about 10–30% of all people with cancer.[1].
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'musicians malign cerebral tumors music'""" ;
-    sc:featureList edam:operation_2421,
-        edam:operation_3503,
-        edam:operation_3659 ;
-    sc:name "list people brain tumors" ;
-    sc:url "https://en.wikipedia.org/wiki/List_of_people_with_brain_tumors" .
-
 <https://bio.tools/listannotation> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2305" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0219 ;
     sc:citation <https://doi.org/10.1093/nar/gkw343>,
@@ -274260,18 +283103,18 @@ A brain tumor is an abnormal growth of cells within the brain or inside the skul
 
 <https://bio.tools/listinputs> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3071 ;
@@ -274290,14 +283133,12 @@ A brain tumor is an abnormal growth of cells within the brain or inside the skul
 
 <https://bio.tools/listor> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ],
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -274327,7 +283168,7 @@ A brain tumor is an abnormal growth of cells within the brain or inside the skul
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/listor.html" .
 
 <https://bio.tools/lit-pcba> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2275,
@@ -274348,7 +283189,7 @@ LIT-PCBA: A dataset for virtual screening and machine learninig.""" ;
     sc:url "http://drugdesign.unistra.fr/LIT-PCBA" .
 
 <https://bio.tools/liteflownet2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3382,
         edam:topic_3474 ;
@@ -274363,22 +283204,20 @@ Over four decades, the majority addresses the problem of optical flow estimation
 
 <https://bio.tools/litemol> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0940" ;
-            sc:name "Electron microscopy volume map" ;
-            sc:sameAs "http://edamontology.org/data_0940" ],
+            sc:additionalType "http://edamontology.org/data_1127" ;
+            sc:name "PDB ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1127" ;
-            sc:name "PDB ID" ;
-            sc:sameAs "http://edamontology.org/data_1127" ],
+            sc:additionalType "http://edamontology.org/data_0940" ;
+            sc:encodingFormat "http://edamontology.org/format_2333" ;
+            sc:name "Electron microscopy volume map" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ] ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1477" ;
+            sc:name "Protein structure" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2992" ;
-            sc:name "Protein structure image" ;
-            sc:sameAs "http://edamontology.org/data_2992" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2992" ;
+            sc:name "Protein structure image" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0092 ;
     sc:author "David Sehnal" ;
@@ -274399,7 +283238,7 @@ Over four decades, the majority addresses the problem of optical flow estimation
     biotools:primaryContact "David Sehnal" .
 
 <https://bio.tools/liteqtl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3512,
@@ -274420,7 +283259,7 @@ Over four decades, the majority addresses the problem of optical flow estimation
     sc:url "https://github.com/senresearch/LiteQTL.jl" .
 
 <https://bio.tools/litinspector> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0218,
         edam:topic_0219,
@@ -274441,7 +283280,7 @@ Over four decades, the majority addresses the problem of optical flow estimation
     sc:url "http://www.litinspector.org/" .
 
 <https://bio.tools/litminer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0218,
@@ -274458,7 +283297,7 @@ Over four decades, the majority addresses the problem of optical flow estimation
     sc:url "http://andromeda.gsf.de/litminer" .
 
 <https://bio.tools/litpathexplorer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0218,
@@ -274477,7 +283316,7 @@ Over four decades, the majority addresses the problem of optical flow estimation
     biotools:primaryContact "Sophia Ananiadou" .
 
 <https://bio.tools/litsuggest> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3068,
         edam:topic_3303,
@@ -274493,7 +283332,7 @@ Over four decades, the majority addresses the problem of optical flow estimation
     biotools:primaryContact <https://orcid.org/0000-0001-9998-916X> .
 
 <https://bio.tools/litt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3305,
         edam:topic_3324,
@@ -274511,7 +283350,7 @@ Over four decades, the majority addresses the problem of optical flow estimation
     sc:url "https://github.com/CDCgov/TB_molecular_epidemiology" .
 
 <https://bio.tools/livebench> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -274533,7 +283372,7 @@ Over four decades, the majority addresses the problem of optical flow estimation
     biotools:primaryContact "Leszek Rychlewski" .
 
 <https://bio.tools/livecell> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0769,
@@ -274558,8 +283397,30 @@ Over four decades, the majority addresses the problem of optical flow estimation
     sc:softwareHelp <https://sartorius-research.github.io/LIVECell/> ;
     sc:url "https://github.com/sartorius-research/LIVECell" .
 
+<https://bio.tools/livecellminer> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_0160,
+        edam:topic_0634,
+        edam:topic_2229,
+        edam:topic_3382 ;
+    sc:citation <https://doi.org/10.1101/2021.11.17.469067> ;
+    sc:description "Extension to the SciXMiner MATLAB toolbox used for quantitative analysis of chromatin decondensation" ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3216,
+        edam:operation_3436,
+        edam:operation_3799 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "LiveCellMiner" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/stegmaierj/LiveCellMiner" .
+
 <https://bio.tools/livelayer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0634,
@@ -274579,7 +283440,7 @@ MISP Research Center, Isfahan University of Medical Sciences.""" ;
     sc:url "https://github.com/MansoorehMontazerin/Livelayer-Software" .
 
 <https://bio.tools/liver-segmentation-levelset-algorithm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3306,
         edam:topic_3344,
@@ -274597,14 +283458,14 @@ MISP Research Center, Isfahan University of Medical Sciences.""" ;
 
 <https://bio.tools/livermore_metagenomics_analysis_toolkit> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3494" ;
-            sc:name "DNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3494" ] ;
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:encodingFormat "http://edamontology.org/format_2546" ;
+            sc:name "DNA sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2080" ;
-            sc:name "Database search results" ;
-            sc:sameAs "http://edamontology.org/data_2080" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2080" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Database search results" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1007/s10586-013-0309-0>,
@@ -274622,7 +283483,7 @@ MISP Research Center, Isfahan University of Medical Sciences.""" ;
     biotools:primaryContact "Maya B Gokhale" .
 
 <https://bio.tools/ljafgd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0202,
@@ -274641,7 +283502,7 @@ MISP Research Center, Isfahan University of Medical Sciences.""" ;
         <https://orcid.org/0000-0001-8985-0818> .
 
 <https://bio.tools/llamanade> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_2830,
@@ -274663,8 +283524,29 @@ MISP Research Center, Isfahan University of Medical Sciences.""" ;
         "Windows" ;
     sc:url "https://github.com/sangzhe/Llamanade" .
 
+<https://bio.tools/llpc> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_2229,
+        edam:topic_3382,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.3389/FNINF.2022.895290>,
+        "pmcid:PMC9133536",
+        "pubmed:35645753" ;
+    sc:description "Local Label Point Correction for Edge Detection of Overlapping Cervical Cells." ;
+    sc:featureList edam:operation_3096,
+        edam:operation_3553,
+        edam:operation_3799 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "LLPC" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/nachifur/LLPC" .
+
 <https://bio.tools/llpsdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0154,
@@ -274685,7 +283567,7 @@ LLPSDB contains LLPS related proteins together with the corresponding phase sepa
     sc:url "http://bio-comp.org.cn/llpsdb" .
 
 <https://bio.tools/lmap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application",
         "Workflow" ;
@@ -274713,7 +283595,7 @@ LLPSDB contains LLPS related proteins together with the corresponding phase sepa
     biotools:primaryContact <https://orcid.org/0000-0002-0084-6116> .
 
 <https://bio.tools/lmap_s> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application",
         "Workflow" ;
@@ -274739,7 +283621,7 @@ The LMAP_S package additionally includes our RYcode.pl application for purine/py
     biotools:primaryContact <https://orcid.org/0000-0002-0084-6116> .
 
 <https://bio.tools/lmcgst> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0654,
@@ -274756,7 +283638,7 @@ The LMAP_S package additionally includes our RYcode.pl application for purine/py
     biotools:primaryContact "Arthur W. Pightling" .
 
 <https://bio.tools/lmdme> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2269,
@@ -274777,7 +283659,7 @@ The LMAP_S package additionally includes our RYcode.pl application for purine/py
     biotools:primaryContact "Cristobal Fresno" .
 
 <https://bio.tools/lme4> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3517,
         edam:topic_3678 ;
@@ -274792,7 +283674,7 @@ The LMAP_S package additionally includes our RYcode.pl application for purine/py
     sc:url "https://cran.r-project.org/web/packages/lme4/index.html" .
 
 <https://bio.tools/lme4gs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0625,
@@ -274813,7 +283695,7 @@ The LMAP_S package additionally includes our RYcode.pl application for purine/py
     sc:url "https://github.com/perpdgo/lme4GS" .
 
 <https://bio.tools/lme4qtl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3053,
@@ -274833,7 +283715,7 @@ The LMAP_S package additionally includes our RYcode.pl application for purine/py
     biotools:primaryContact "Support" .
 
 <https://bio.tools/lmgene> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -274852,7 +283734,7 @@ The LMAP_S package additionally includes our RYcode.pl application for purine/py
     biotools:primaryContact "Blythe Durbin-Johnson" .
 
 <https://bio.tools/lmm-lasso> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3053 ;
@@ -274868,7 +283750,7 @@ The LMAP_S package additionally includes our RYcode.pl application for purine/py
     sc:url "http://www.bsse.ethz.ch/mlcb/research/bioinformatics-and-computational-biology/lmm-lasso.html" .
 
 <https://bio.tools/lmm2met> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3172,
@@ -274890,7 +283772,7 @@ The LMAP_S package additionally includes our RYcode.pl application for purine/py
     biotools:primaryContact "Sakda Khoomrung" .
 
 <https://bio.tools/lmme> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0202,
@@ -274909,7 +283791,7 @@ The LMAP_S package additionally includes our RYcode.pl application for purine/py
     biotools:primaryContact <https://orcid.org/0000-0002-1286-1372> .
 
 <https://bio.tools/lms> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3305,
@@ -274931,7 +283813,7 @@ The LMAP_S package additionally includes our RYcode.pl application for purine/py
     sc:url "https://wenn23.shinyapps.io/lmslmosapp/" .
 
 <https://bio.tools/lmsm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0659,
@@ -274953,8 +283835,50 @@ Until now, existing methods for identifying lncRNA related miRNA sponge modules
     sc:name "LMSM" ;
     sc:url "https://github.com/zhangjunpeng411/LMSM" .
 
+<https://bio.tools/lmt_usv_toolbox> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0621,
+        edam:topic_0625,
+        edam:topic_3520 ;
+    sc:citation <https://doi.org/10.3389/FNBEH.2021.735920>,
+        "pmcid:PMC8548730",
+        "pubmed:34720899" ;
+    sc:description "Novel Methodological Approach to Place Mouse Ultrasonic Vocalizations in Their Behavioral Contexts." ;
+    sc:featureList edam:operation_2409,
+        edam:operation_3196,
+        edam:operation_3891 ;
+    sc:isAccessibleForFree true ;
+    sc:name "LMT USV Toolbox" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://usv.pasteur.cloud" .
+
+<https://bio.tools/lmtracemap> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3301,
+        edam:topic_3305,
+        edam:topic_3324,
+        edam:topic_3411,
+        edam:topic_3673 ;
+    sc:citation <https://doi.org/10.1371/JOURNAL.PONE.0267972>,
+        "pmcid:PMC9084517",
+        "pubmed:35533187" ;
+    sc:description "A Listeria monocytogenes fast-tracing platform for global surveillance." ;
+    sc:featureList edam:operation_0335,
+        edam:operation_0337,
+        edam:operation_3840 ;
+    sc:license "Other" ;
+    sc:name "LmTraceMap" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://lmtracemap.cgu.edu.tw/hua_map/test/upload.php" .
+
 <https://bio.tools/lnatools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0082,
@@ -274978,7 +283902,7 @@ Until now, existing methods for identifying lncRNA related miRNA sponge modules
         "Support in the US" .
 
 <https://bio.tools/lnc2cancer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0659,
@@ -274999,8 +283923,35 @@ Lnc2Cancer, is a manually curated database that provides comprehensive experimen
     sc:softwareVersion "3.0" ;
     sc:url "http://www.bio-bigdata.net/lnc2cancer" .
 
+<https://bio.tools/lncactdb> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_0968" ;
+            sc:name "Keyword" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0625,
+        edam:topic_0634,
+        edam:topic_0659,
+        edam:topic_2640,
+        edam:topic_3577 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAB1092>,
+        "pmcid:PMC8728196",
+        "pubmed:34850125" ;
+    sc:description "An updated database of experimentally supported ceRNA interactions and personalized networks contributing to precision medicine." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_0463,
+        edam:operation_2421,
+        edam:operation_3792 ;
+    sc:isAccessibleForFree true ;
+    sc:name "LncACTdb" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareVersion "3.0" ;
+    sc:url "http://bio-bigdata.hrbmu.edu.cn/LncACTdb" .
+
 <https://bio.tools/lncdisease> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0634,
@@ -275015,7 +283966,7 @@ Lnc2Cancer, is a manually curated database that provides comprehensive experimen
     biotools:primaryContact "Qinghua Cui（崔庆华）" .
 
 <https://bio.tools/lncecell> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0625,
@@ -275033,7 +283984,7 @@ Lnc2Cancer, is a manually curated database that provides comprehensive experimen
     sc:url "http://www.bio-bigdata.net/LnCeCell/" .
 
 <https://bio.tools/lncevo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0659,
@@ -275050,7 +284001,7 @@ Lnc2Cancer, is a manually curated database that provides comprehensive experimen
     sc:url "https://gitlab.com/spirit678/lncrna_conservation_nf" .
 
 <https://bio.tools/lncexpdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -275073,14 +284024,12 @@ LncExpDB is a comprehensive database for lncRNA expression. It covers expression
 
 <https://bio.tools/lncexplore> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1033" ;
-            sc:name "Ensembl gene ID" ;
-            sc:sameAs "http://edamontology.org/data_1033" ],
+            sc:additionalType "http://edamontology.org/data_1026" ;
+            sc:name "Gene symbol" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1026" ;
-            sc:name "Gene symbol" ;
-            sc:sameAs "http://edamontology.org/data_1026" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1033" ;
+            sc:name "Ensembl gene ID" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -275104,7 +284053,7 @@ LncExpDB is a comprehensive database for lncRNA expression. It covers expression
     sc:url "http://lncexplore.bmi.nycu.edu.tw" .
 
 <https://bio.tools/lncgsea> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0659,
@@ -275127,7 +284076,7 @@ LncExpDB is a comprehensive database for lncRNA expression. It covers expression
     sc:url "https://github.com/ylab-hi/lncGSEA" .
 
 <https://bio.tools/lncident> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0659 ;
     sc:citation <https://doi.org/10.1155/2016/9185496>,
@@ -275146,26 +284095,23 @@ LncExpDB is a comprehensive database for lncRNA expression. It covers expression
 
 <https://bio.tools/lncipedia> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2012" ;
-            sc:name "Sequence coordinates" ;
-            sc:sameAs "http://edamontology.org/data_2012" ],
+            sc:additionalType "http://edamontology.org/data_2012" ;
+            sc:name "Sequence coordinates" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2295" ;
-            sc:name "Gene ID" ;
-            sc:sameAs "http://edamontology.org/data_2295" ],
+            sc:additionalType "http://edamontology.org/data_2295" ;
+            sc:encodingFormat "http://edamontology.org/format_2306" ;
+            sc:name "Gene ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3495" ;
-            sc:name "RNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3495" ] ;
+            sc:additionalType "http://edamontology.org/data_3495" ;
+            sc:name "RNA sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ],
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_2306" ;
+            sc:name "Annotation track" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2012" ;
-            sc:name "Sequence coordinates" ;
-            sc:sameAs "http://edamontology.org/data_2012" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2012" ;
+            sc:name "Sequence coordinates" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0114,
         edam:topic_3473 ;
@@ -275181,7 +284127,7 @@ LncExpDB is a comprehensive database for lncRNA expression. It covers expression
     sc:url "http://www.lncipedia.org/" .
 
 <https://bio.tools/lncmachine> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0659,
@@ -275202,7 +284148,7 @@ lncMachine requires python3 or newer.""" ;
     sc:url "https://github.com/hbusra/lncMachine.git" .
 
 <https://bio.tools/lncmim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Script" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -275225,7 +284171,7 @@ Increasing lncRNA-associated competing triplets were found to play important rol
     sc:url "https://github.com/xiaofengsong/LncMiM" .
 
 <https://bio.tools/lncr2metasta> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0659,
@@ -275245,7 +284191,7 @@ A database for experimentally supported lncRNAs during various cancer metastatic
     sc:url "http://lncR2metasta.wchoda.com" .
 
 <https://bio.tools/lncrbase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0659,
@@ -275263,7 +284209,7 @@ A database for experimentally supported lncRNAs during various cancer metastatic
     sc:url "http://dibresources.jcbose.ac.in/zhumur/lncrbase2/" .
 
 <https://bio.tools/lncrna-id> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0659,
@@ -275279,7 +284225,7 @@ A database for experimentally supported lncRNAs during various cancer metastatic
     biotools:primaryContact "Yuan Zhang" .
 
 <https://bio.tools/lncrna_mdeep> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0659,
@@ -275292,7 +284238,7 @@ lncRNA_Mdeep is a computational tool for distinguishing lncRNAs from protein-cod
     sc:url "https://github.com/NWPU-903PR/lncRNA_Mdeep" .
 
 <https://bio.tools/lncrnadb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0203,
@@ -275312,8 +284258,32 @@ lncRNA_Mdeep is a computational tool for distinguishing lncRNAs from protein-cod
     sc:url "http://www.lncrnadb.org/" ;
     biotools:primaryContact "Quek Xiu Cheng" .
 
+<https://bio.tools/lncrnafunc> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0659,
+        edam:topic_0749,
+        edam:topic_2640,
+        edam:topic_3320,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAB1035>,
+        "pmcid:PMC8728133",
+        "pubmed:34791419" ;
+    sc:description "A knowledgebase of lncRNA function in human cancer." ;
+    sc:featureList edam:operation_0420,
+        edam:operation_0463,
+        edam:operation_3792,
+        edam:operation_3901 ;
+    sc:isAccessibleForFree true ;
+    sc:name "lncRNAfunc" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://ccsm.uth.edu/lncRNAfunc" .
+
 <https://bio.tools/lncrnakb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0659,
@@ -275337,7 +284307,7 @@ LncRNAKB is an invaluable resource to understand the biological importance of lo
     sc:url "http://www.lncrnakb.org/" .
 
 <https://bio.tools/lncrnator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0128,
@@ -275355,7 +284325,7 @@ LncRNAKB is an invaluable resource to understand the biological importance of lo
     sc:url "http://lncrnator.ewha.ac.kr/" .
 
 <https://bio.tools/lncsea> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0659,
@@ -275375,7 +284345,7 @@ Welcome to LncSEA a comprehensive human lncRNA sets resource and enrichment anal
     sc:url "http://bio.liclab.net/LncSEA/index.php" .
 
 <https://bio.tools/lncspa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0659,
@@ -275395,7 +284365,7 @@ Knowledge of lncRNA spatial expression patterns across tissues is important for
     sc:url "http://bio-bigdata.hrbmu.edu.cn/LncSpA" .
 
 <https://bio.tools/lnctar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0099,
@@ -275413,7 +284383,7 @@ Knowledge of lncRNA spatial expression patterns across tissues is important for
     biotools:primaryContact "Dr. Qinghua Cui" .
 
 <https://bio.tools/lnetreduce> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_3324,
@@ -275427,7 +284397,7 @@ Knowledge of lncRNA spatial expression patterns across tissues is important for
     biotools:primaryContact <https://orcid.org/0000-0001-6453-5707> .
 
 <https://bio.tools/lnetwork> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_3293,
@@ -275444,7 +284414,7 @@ Knowledge of lncRNA spatial expression patterns across tissues is important for
     biotools:primaryContact "Juan Wang" .
 
 <https://bio.tools/lnj> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_3293 ;
@@ -275458,7 +284428,7 @@ Knowledge of lncRNA spatial expression patterns across tissues is important for
     biotools:primaryContact "Nalvo F. Almeida" .
 
 <https://bio.tools/lnkg2lmlnk> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102 ;
     sc:description "A new converter from Linkage-style to Morgan ver 3 style data files." ;
@@ -275471,7 +284441,7 @@ Knowledge of lncRNA spatial expression patterns across tissues is important for
     biotools:primaryContact "Support" .
 
 <https://bio.tools/lnlcorr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078 ;
     sc:citation <https://doi.org/10.1007/s00239-007-9018-8>,
@@ -275488,7 +284458,7 @@ Knowledge of lncRNA spatial expression patterns across tissues is important for
     sc:url "http://www.evolutionarygenomics.com/ProgramsData/lnlcorr/LnLCorr.html" .
 
 <https://bio.tools/lnsignal> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154 ;
     sc:citation <https://doi.org/10.2174/1574893611308020006> ;
@@ -275503,14 +284473,14 @@ Knowledge of lncRNA spatial expression patterns across tissues is important for
 
 <https://bio.tools/load_multifastq> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:citation <https://doi.org/10.1093/nar/gkw343>,
@@ -275527,7 +284497,7 @@ Knowledge of lncRNA spatial expression patterns across tissues is important for
     biotools:primaryContact "Galaxy Support Team" .
 
 <https://bio.tools/lobo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082 ;
     sc:citation <https://doi.org/10.1093/protein/15.4.279>,
@@ -275545,7 +284515,7 @@ Knowledge of lncRNA spatial expression patterns across tissues is important for
     biotools:primaryContact "Silvio Tosatto" .
 
 <https://bio.tools/lobstahs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0154,
@@ -275566,7 +284536,7 @@ Knowledge of lncRNA spatial expression patterns across tissues is important for
     biotools:primaryContact <http://orcid.org/0000-0002-5705-9682> .
 
 <https://bio.tools/lobstr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:citation "pubmed:22522390" ;
@@ -275580,7 +284550,7 @@ Knowledge of lncRNA spatial expression patterns across tissues is important for
         "lobSTR user group mailing list" .
 
 <https://bio.tools/loc3d> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0081,
@@ -275599,7 +284569,7 @@ Knowledge of lncRNA spatial expression patterns across tissues is important for
     sc:url "http://cubic.bioc.columbia.edu/db/LOC3d/" .
 
 <https://bio.tools/local-reciprocal-blast-search> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:description "Perform reciprocal blast against two databases to find RBH Orthologs" ;
     sc:featureList edam:operation_2421,
@@ -275615,7 +284585,7 @@ Knowledge of lncRNA spatial expression patterns across tissues is important for
     biotools:primaryContact "Hengfu Yin" .
 
 <https://bio.tools/local_clustering> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3053 ;
@@ -275630,7 +284600,7 @@ Knowledge of lncRNA spatial expression patterns across tissues is important for
     biotools:primaryContact "Mark Gerstein" .
 
 <https://bio.tools/localali> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2259 ;
@@ -275644,7 +284614,7 @@ Knowledge of lncRNA spatial expression patterns across tissues is important for
     biotools:primaryContact "Jialu Hu" .
 
 <https://bio.tools/localcider> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0130,
@@ -275665,7 +284635,7 @@ Knowledge of lncRNA spatial expression patterns across tissues is important for
         "Rohit V. Pappu" .
 
 <https://bio.tools/localcontrol> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3303,
         edam:topic_3377,
@@ -275684,7 +284654,7 @@ Knowledge of lncRNA spatial expression patterns across tissues is important for
     sc:url "https://CRAN.R-project.org/package=LocalControl" .
 
 <https://bio.tools/localization-hard-exudates-retinal-fundus-images> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -275702,7 +284672,7 @@ Knowledge of lncRNA spatial expression patterns across tissues is important for
     biotools:primaryContact "Bagadam David" .
 
 <https://bio.tools/localizome> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -275726,7 +284696,7 @@ Knowledge of lncRNA spatial expression patterns across tissues is important for
         "Sangsoo Kim" .
 
 <https://bio.tools/localmove> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0099,
@@ -275743,8 +284713,30 @@ Knowledge of lncRNA spatial expression patterns across tissues is important for
     sc:url "http://bioinformatics.bc.edu/clotelab/localmove/" ;
     biotools:primaryContact "Clote Structural Biology Lab" .
 
+<https://bio.tools/localngsrelate> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_0625,
+        edam:topic_2885,
+        edam:topic_3168 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAB732>,
+        "pmcid:PMC8796377",
+        "pubmed:34718411" ;
+    sc:description "A software tool for inferring IBD sharing along the genome between pairs of individuals from low-depth NGS data." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_0484,
+        edam:operation_3196 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "LocalNgsRelate" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/idamoltke/LocalNgsRelate" .
+
 <https://bio.tools/localstar3d> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0097,
@@ -275766,7 +284758,7 @@ LocalSTAR3D is a program for the local alignment of RNA 3D structures.""" ;
     sc:url "http://genome.ucf.edu/LocalSTAR3D" .
 
 <https://bio.tools/localvar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0621,
@@ -275786,7 +284778,7 @@ LocalSTAR3D is a program for the local alignment of RNA 3D structures.""" ;
     sc:url "http://www.watkinscv.com/app-demos/LocalVar" .
 
 <https://bio.tools/localzprojector> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_3383 ;
     sc:citation <https://doi.org/10.1101/2021.01.15.426809v3> ;
@@ -275799,24 +284791,43 @@ LocalSTAR3D is a program for the local alignment of RNA 3D structures.""" ;
     sc:url "https://gitlab.pasteur.fr/iah-public/localzprojector" ;
     biotools:primaryContact <https://orcid.org/0000-0002-0998-4718> .
 
+<https://bio.tools/locan> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Library" ;
+    sc:applicationSubCategory edam:topic_0091,
+        edam:topic_3303,
+        edam:topic_3382 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC160>,
+        "pubmed:35298593" ;
+    sc:description "A python library for analyzing single-molecule localization microscopy data." ;
+    sc:isAccessibleForFree true ;
+    sc:license "BSD-3-Clause" ;
+    sc:name "LOCAN" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://locan.readthedocs.io> ;
+    sc:url "https://pypi.org/project/locan" .
+
 <https://bio.tools/locarna> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3495" ;
-            sc:name "RNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3495" ] ;
+            sc:additionalType "http://edamontology.org/data_3495" ;
+            sc:encodingFormat "http://edamontology.org/format_2200" ;
+            sc:name "RNA sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0872" ;
-            sc:name "Phylogenetic tree" ;
-            sc:sameAs "http://edamontology.org/data_0872" ],
+            sc:additionalType "http://edamontology.org/data_1916" ;
+            sc:encodingFormat "http://edamontology.org/format_3508" ;
+            sc:name "Alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1465" ;
-            sc:name "RNA structure" ;
-            sc:sameAs "http://edamontology.org/data_1465" ],
+            sc:additionalType "http://edamontology.org/data_0872" ;
+            sc:encodingFormat "http://edamontology.org/format_1910" ;
+            sc:name "Phylogenetic tree" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1916" ;
-            sc:name "Alignment" ;
-            sc:sameAs "http://edamontology.org/data_1916" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1465" ;
+            sc:encodingFormat "http://edamontology.org/format_3466" ;
+            sc:name "RNA structure" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0097 ;
     sc:author <http://orcid.org/0000-0001-8231-3323>,
@@ -275840,22 +284851,22 @@ LocalSTAR3D is a program for the local alignment of RNA 3D structures.""" ;
 
 <https://bio.tools/locarna-p> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3495" ;
-            sc:name "RNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3495" ] ;
+            sc:additionalType "http://edamontology.org/data_3495" ;
+            sc:encodingFormat "http://edamontology.org/format_2200" ;
+            sc:name "RNA sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1465" ;
-            sc:name "RNA structure" ;
-            sc:sameAs "http://edamontology.org/data_1465" ],
+            sc:additionalType "http://edamontology.org/data_1916" ;
+            sc:encodingFormat "http://edamontology.org/format_3508" ;
+            sc:name "Alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1916" ;
-            sc:name "Alignment" ;
-            sc:sameAs "http://edamontology.org/data_1916" ],
+            sc:additionalType "http://edamontology.org/data_1465" ;
+            sc:encodingFormat "http://edamontology.org/format_3466" ;
+            sc:name "RNA structure" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0872" ;
-            sc:name "Phylogenetic tree" ;
-            sc:sameAs "http://edamontology.org/data_0872" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0872" ;
+            sc:encodingFormat "http://edamontology.org/format_1910" ;
+            sc:name "Phylogenetic tree" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0097 ;
@@ -275879,7 +284890,7 @@ LocalSTAR3D is a program for the local alignment of RNA 3D structures.""" ;
         "Sebastian Will" .
 
 <https://bio.tools/locas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196 ;
     sc:citation "pubmed:21858125" ;
@@ -275892,7 +284903,7 @@ LocalSTAR3D is a program for the local alignment of RNA 3D structures.""" ;
     biotools:primaryContact "Juliane D. Klein" .
 
 <https://bio.tools/locate> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0121,
@@ -275915,7 +284926,7 @@ LocalSTAR3D is a program for the local alignment of RNA 3D structures.""" ;
         "Rohan Teasdale" .
 
 <https://bio.tools/locate-r> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_2269,
@@ -275934,7 +284945,7 @@ The system will take one RNA sequence at a time.""" ;
     sc:url "http://locate-r.azurewebsites.net/" .
 
 <https://bio.tools/locdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0089,
@@ -275954,7 +284965,7 @@ The system will take one RNA sequence at a time.""" ;
         "Shruti Rastogi" .
 
 <https://bio.tools/locfdr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0625,
@@ -275978,7 +284989,7 @@ The system will take one RNA sequence at a time.""" ;
     biotools:primaryContact <https://orcid.org/0000-0002-9224-4410> .
 
 <https://bio.tools/lochap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3053,
@@ -275994,7 +285005,7 @@ The system will take one RNA sequence at a time.""" ;
     sc:url "http://compgenome.org/lochap/" .
 
 <https://bio.tools/loci2path> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0085,
         edam:topic_0203,
@@ -276014,7 +285025,7 @@ The system will take one RNA sequence at a time.""" ;
     biotools:primaryContact "Tianlei Xu" .
 
 <https://bio.tools/lock> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0166,
         edam:topic_2814 ;
@@ -276027,7 +285038,7 @@ The system will take one RNA sequence at a time.""" ;
     sc:url "http://motif.stanford.edu/distributions/lock/" .
 
 <https://bio.tools/locnes> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0602,
@@ -276043,7 +285054,7 @@ The system will take one RNA sequence at a time.""" ;
     sc:url "http://prodata.swmed.edu/LocNES/LocNES.php" .
 
 <https://bio.tools/locp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0160 ;
@@ -276059,7 +285070,7 @@ The system will take one RNA sequence at a time.""" ;
     biotools:primaryContact <http://orcid.org/0000-0002-4714-9481> .
 
 <https://bio.tools/locpred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_2814 ;
@@ -276074,7 +285085,7 @@ The system will take one RNA sequence at a time.""" ;
     sc:url "http://www.dsimb.inserm.fr/~debrevern/TOOLS/LOCPRED/index.html" .
 
 <https://bio.tools/locsmoc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3168,
@@ -276091,7 +285102,7 @@ The system will take one RNA sequence at a time.""" ;
     biotools:primaryContact "Vincent Detours" .
 
 <https://bio.tools/loctarget> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0128,
@@ -276108,14 +285119,14 @@ The system will take one RNA sequence at a time.""" ;
 
 <https://bio.tools/loctree2> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2886" ;
-            sc:name "Protein sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2886" ] ;
+            sc:additionalType "http://edamontology.org/data_2886" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0896" ;
-            sc:name "Protein report" ;
-            sc:sameAs "http://edamontology.org/data_0896" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0896" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Protein report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0123,
@@ -276138,14 +285149,14 @@ The system will take one RNA sequence at a time.""" ;
 
 <https://bio.tools/loctree3> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2886" ;
-            sc:name "Protein sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2886" ] ;
+            sc:additionalType "http://edamontology.org/data_2886" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0896" ;
-            sc:name "Protein report" ;
-            sc:sameAs "http://edamontology.org/data_0896" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0896" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Protein report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -276177,7 +285188,7 @@ The system will take one RNA sequence at a time.""" ;
     sc:url "https://rostlab.org/services/loctree3/" .
 
 <https://bio.tools/locus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3320 ;
@@ -276191,7 +285202,7 @@ The system will take one RNA sequence at a time.""" ;
     sc:url "http://stormo.wustl.edu/resources.html" .
 
 <https://bio.tools/locusexplorer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0219,
@@ -276210,7 +285221,7 @@ The system will take one RNA sequence at a time.""" ;
     biotools:primaryContact "Tokhir Dadaev" .
 
 <https://bio.tools/locusfocus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0203,
@@ -276233,7 +285244,7 @@ A Colocalization Tool to Prioritize Genes and Tissues from GWAS and eQTL Integra
     sc:url "https://locusfocus.research.sickkids.ca" .
 
 <https://bio.tools/locusmap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3053 ;
@@ -276249,7 +285260,7 @@ A Colocalization Tool to Prioritize Genes and Tissues from GWAS and eQTL Integra
     sc:url "http://animalgene.umn.edu/locusmap/index.html" .
 
 <https://bio.tools/locuszoom> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0102,
@@ -276279,7 +285290,7 @@ The LocusZoom.js library provides several pre-defined layouts for entire plots a
     sc:url "https://github.com/statgen/locuszoom/" .
 
 <https://bio.tools/lodgwas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3053,
         edam:topic_3360,
@@ -276296,7 +285307,7 @@ The LocusZoom.js library provides several pre-defined layouts for entire plots a
     biotools:primaryContact "Ilja M. Nolte" .
 
 <https://bio.tools/lofreq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "LoFreq* (i.e. LoFreq version 2) is a fast and sensitive variant-caller for inferring SNVs and indels from next-generation sequencing data. It makes full use of base-call qualities and other sources of errors inherent in sequencing (e.g. mapping or base/indel alignment uncertainty), which are usually ignored by other methods or only used for filtering." ;
     sc:name "lofreq" ;
     sc:softwareVersion "v2.1.5" ;
@@ -276304,10 +285315,10 @@ The LocusZoom.js library provides several pre-defined layouts for entire plots a
 
 <https://bio.tools/loftk> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0622,
@@ -276327,7 +285338,7 @@ The LocusZoom.js library provides several pre-defined layouts for entire plots a
     sc:url "https://github.com/CirculatoryHealth/LoFTK" .
 
 <https://bio.tools/log-p-value-fisher-exact-test-hypergeometric-distribution> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2229 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btp235> ;
@@ -276342,7 +285353,7 @@ The LocusZoom.js library provides several pre-defined layouts for entire plots a
     biotools:primaryContact "Jia Meng" .
 
 <https://bio.tools/logicfs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -276362,7 +285373,7 @@ The LocusZoom.js library provides several pre-defined layouts for entire plots a
     biotools:primaryContact "Holger Schwender" .
 
 <https://bio.tools/logicnet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -276378,7 +285389,7 @@ The LocusZoom.js library provides several pre-defined layouts for entire plots a
     sc:url "https://github.com/CompBioIPM/LogicNet" .
 
 <https://bio.tools/logikey> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3315,
@@ -276393,7 +285404,7 @@ LogiKEy Workbench (dataset of formalized knowledge): Flexible, Pluralistic Found
     sc:url "http://logikey.org" .
 
 <https://bio.tools/logiqa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0622,
@@ -276412,7 +285423,7 @@ LogiKEy Workbench (dataset of formalized knowledge): Flexible, Pluralistic Found
     biotools:primaryContact "Hinrich Gronemeyer" .
 
 <https://bio.tools/logitt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0077,
@@ -276431,7 +285442,7 @@ LogiKEy Workbench (dataset of formalized knowledge): Flexible, Pluralistic Found
     biotools:primaryContact "Tobias Guennel" .
 
 <https://bio.tools/logliveplotcovid19> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -276448,7 +285459,7 @@ LogiKEy Workbench (dataset of formalized knowledge): Flexible, Pluralistic Found
     biotools:primaryContact "Lateef Adewale Kareem" .
 
 <https://bio.tools/logminer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0804,
@@ -276467,7 +285478,7 @@ LogiKEy Workbench (dataset of formalized knowledge): Flexible, Pluralistic Found
         "Steven Kleinstein" .
 
 <https://bio.tools/lognormal-perfusion-model> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3954 ;
     sc:description "Fit disruption replenishment time-intensity data with the lognormal perfusion model" ;
@@ -276480,8 +285491,30 @@ LogiKEy Workbench (dataset of formalized knowledge): Flexible, Pluralistic Found
     sc:url "https://www.mathworks.com/matlabcentral/fileexchange/40786-lognormal-perfusion-model" ;
     biotools:primaryContact "John Hudson" .
 
+<https://bio.tools/logo> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0218,
+        edam:topic_0749,
+        edam:topic_2815,
+        edam:topic_3517,
+        edam:topic_3574 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAC326>,
+        "pubmed:35536244" ;
+    sc:description "Integrating convolution and self-attention improves language model of human genome for interpreting non-coding regions at base-resolution." ;
+    sc:featureList edam:operation_0331,
+        edam:operation_0440,
+        edam:operation_3226 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "LOGO" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/melobio/LOGO" .
+
 <https://bio.tools/logobar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0154,
@@ -276502,7 +285535,7 @@ LogiKEy Workbench (dataset of formalized knowledge): Flexible, Pluralistic Found
     biotools:primaryContact "Thomas Burglin" .
 
 <https://bio.tools/logoddslogo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0092 ;
@@ -276519,7 +285552,7 @@ LogiKEy Workbench (dataset of formalized knowledge): Flexible, Pluralistic Found
     biotools:primaryContact "Yi-Kuo Yu" .
 
 <https://bio.tools/logojs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2885,
@@ -276539,18 +285572,18 @@ Create Logos: paste or upload data in common formats.""" ;
 
 <https://bio.tools/logol> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1353" ;
-            sc:name "Sequence motif" ;
-            sc:sameAs "http://edamontology.org/data_1353" ],
+            sc:additionalType "http://edamontology.org/data_1353" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Sequence motif" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0858" ;
-            sc:name "Sequence signature matches" ;
-            sc:sameAs "http://edamontology.org/data_0858" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0858" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Sequence signature matches" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0160 ;
@@ -276570,7 +285603,7 @@ Create Logos: paste or upload data in common formats.""" ;
     biotools:primaryContact "GenOuest" .
 
 <https://bio.tools/logolas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:citation <https://doi.org/10.1101/226597> ;
@@ -276589,7 +285622,7 @@ Create Logos: paste or upload data in common formats.""" ;
     biotools:primaryContact "Kushal Dey" .
 
 <https://bio.tools/loica> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3315,
@@ -276610,7 +285643,7 @@ Create Logos: paste or upload data in common formats.""" ;
     sc:url "https://github.com/RudgeLab/LOICA" .
 
 <https://bio.tools/lol> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -276629,7 +285662,7 @@ Create Logos: paste or upload data in common formats.""" ;
     biotools:primaryContact "Yinyin Yuan" .
 
 <https://bio.tools/lola> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -276648,7 +285681,7 @@ Create Logos: paste or upload data in common formats.""" ;
     biotools:primaryContact "Nathan Sheffield" .
 
 <https://bio.tools/lolaweb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0749 ;
@@ -276664,7 +285697,7 @@ Create Logos: paste or upload data in common formats.""" ;
     sc:url "http://lolaweb.databio.org" .
 
 <https://bio.tools/long-bone-diaphyseal-CSG-Toolkit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3452 ;
     sc:citation <https://doi.org/10.1016/j.forsciint.2019.01.041>,
@@ -276681,7 +285714,7 @@ Create Logos: paste or upload data in common formats.""" ;
     biotools:primaryContact "Andreas Bertsatos" .
 
 <https://bio.tools/long-read-tools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0091,
@@ -276700,13 +285733,8 @@ Create Logos: paste or upload data in common formats.""" ;
         "Windows" ;
     sc:url "https://long-read-tools.org/" .
 
-<https://bio.tools/long-read_metagenomic_sequencing> a sc:SoftwareApplication ;
-    sc:description "CD Genomics has further optimized the process to exceed PacBio’s benchmarks in output and read length to support long-read metagenomic sequencing, and reduce some splicing errors and effectively improve the resolution of microbial community profiling. PacBio System is highly robust and cost-effective and should be the platform of choice in metagenomics sequencing , particularly for complex sample and low-diversity microbial communities. CD Genomics will be your best companion in long-read metagenomic sequencing. Please contact us for more information and a detailed quote." ;
-    sc:name "Long-Read Metagenomic Sequencing" ;
-    sc:url "https://www.cd-genomics.com/Long-Read-Metagenomic-Sequencing.html" .
-
 <https://bio.tools/longage> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3175 ;
@@ -276724,7 +285752,7 @@ LongAGE is a memory-efficient implementation of AGE (https://github.com/abyzovla
     sc:url "https://github.com/Coaxecva/LongAGE" .
 
 <https://bio.tools/longgenedb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0634,
@@ -276742,7 +285770,7 @@ Long genes harbor specific genomic and epigenomic features and have been implica
     sc:url "https://longgenedb.com" .
 
 <https://bio.tools/longgf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_2640,
@@ -276763,7 +285791,7 @@ A computational algorithm and software tool for fast and accurate detection of g
     sc:url "https://github.com/WGLab/LongGF" .
 
 <https://bio.tools/longgwas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3053,
@@ -276780,7 +285808,7 @@ A computational algorithm and software tool for fast and accurate detection of g
     biotools:primaryContact "Nicholas Furlotte" .
 
 <https://bio.tools/longislnd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3053 ;
@@ -276796,27 +285824,8 @@ A computational algorithm and software tool for fast and accurate detection of g
     sc:softwareHelp <http://bioinform.github.io/longislnd/> ;
     sc:url "https://github.com/bioinform/longislnd" .
 
-<https://bio.tools/longitudinal_multiomic_analysis_public> a sc:SoftwareApplication ;
-    sc:additionalType "Command-line tool" ;
-    sc:applicationSubCategory edam:topic_0154,
-        edam:topic_0602,
-        edam:topic_3172,
-        edam:topic_3697 ;
-    sc:citation <https://doi.org/10.1101/835124> ;
-    sc:description """Dynamic Bayesian networks for integrating multi-omics time-series microbiome data.
-
-longitudinal_multiomic_analysis_public.
-
-The source code and documentation will be posted here after publication.""" ;
-    sc:featureList edam:operation_2428,
-        edam:operation_2495,
-        edam:operation_3435 ;
-    sc:license "MIT" ;
-    sc:name "longitudinal multiomic analysis public" ;
-    sc:url "https://github.com/DaniRuizPerez/longitudinal_multiomic_analysis_public" .
-
 <https://bio.tools/longo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2229,
@@ -276835,7 +285844,7 @@ The source code and documentation will be posted here after publication.""" ;
     biotools:primaryContact "Tae-Hyuk Ahn" .
 
 <https://bio.tools/longranger> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0622,
@@ -276861,8 +285870,22 @@ The source code and documentation will be posted here after publication.""" ;
         <https://support.10xgenomics.com/genome-exome/software/pipelines/latest/using/wgs> ;
     sc:url "https://support.10xgenomics.com/genome-exome/software/pipelines/latest/what-is-long-ranger" .
 
+<https://bio.tools/longshot> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0199 ;
+    sc:citation <https://doi.org/10.1038/s41467-019-12493-y> ;
+    sc:description "Longshot is a variant calling tool for diploid genomes using long error prone reads such as Pacific Biosciences (PacBio) SMRT and Oxford Nanopore Technologies (ONT). It takes as input an aligned BAM file and outputs a phased VCF file with variants and haplotype information. It can also genotype and phase input VCF files. It can output haplotype-separated BAM files that can be used for downstream analysis. Currently, it only calls single nucleotide variants (SNVs), but it can genotype indels if they are given in an input VCF." ;
+    sc:featureList edam:operation_3227 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "Longshot" ;
+    sc:softwareHelp <https://bioconda.github.io/recipes/longshot/README.html> ;
+    sc:url "https://github.com/pjedge/longshot" ;
+    biotools:primaryContact "Vikas Bansal" .
+
 <https://bio.tools/longstitch> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
@@ -276882,7 +285905,7 @@ The source code and documentation will be posted here after publication.""" ;
     sc:url "https://github.com/bcgsc/longstitch" .
 
 <https://bio.tools/longtron> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Script" ;
     sc:applicationSubCategory edam:topic_0102,
@@ -276900,7 +285923,7 @@ The source code and documentation will be posted here after publication.""" ;
     sc:url "https://github.com/schatzlab/LongTron" .
 
 <https://bio.tools/lookseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0092,
@@ -276923,7 +285946,7 @@ The source code and documentation will be posted here after publication.""" ;
     biotools:primaryContact "Dr Magnus Manske" .
 
 <https://bio.tools/loopdetect> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0602,
@@ -276942,8 +285965,31 @@ LoopDetect - comprehensive detection of feedback loops in ODE models.""" ;
     sc:name "LoopDetect" ;
     sc:url "https://de.mathworks.com/matlabcentral/fileexchange/81928-loopdetect/" .
 
+<https://bio.tools/loopgrafter> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0130,
+        edam:topic_0736,
+        edam:topic_0821,
+        edam:topic_3421,
+        edam:topic_3542 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAC249>,
+        "pubmed:35438789" ;
+    sc:description "A web tool for transplanting dynamical loops for protein engineering." ;
+    sc:featureList edam:operation_0244,
+        edam:operation_0249,
+        edam:operation_0479,
+        edam:operation_0481,
+        edam:operation_4008 ;
+    sc:isAccessibleForFree true ;
+    sc:name "LoopGrafter" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://loschmidt.chemi.muni.cz/loopgrafter/" .
+
 <https://bio.tools/looping> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0736,
         edam:topic_2814 ;
@@ -276959,7 +286005,7 @@ LoopDetect - comprehensive detection of feedback loops in ODE models.""" ;
     sc:url "http://circe.med.uniroma1.it/looping/" .
 
 <https://bio.tools/loopviz> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0203,
@@ -276977,7 +286023,7 @@ Cloning has been an integral part of most laboratory research questions and cont
     sc:url "https://gitlab.com/marielelensink325/loopseq" .
 
 <https://bio.tools/loqum> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0102,
@@ -276993,7 +286039,7 @@ Cloning has been an integral part of most laboratory research questions and cont
     sc:url "http://compbio.case.edu/loqum/" .
 
 <https://bio.tools/lord> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_3325 ;
@@ -277011,7 +286057,7 @@ Cloning has been an integral part of most laboratory research questions and cont
     sc:url "http://enlord.bndmr.fr/#homepage" .
 
 <https://bio.tools/lordFAST> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3168,
@@ -277032,7 +286078,7 @@ Cloning has been an integral part of most laboratory research questions and cont
         "Faraz Hach" .
 
 <https://bio.tools/lordec> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0654,
@@ -277049,7 +286095,7 @@ Cloning has been an integral part of most laboratory research questions and cont
         "Leena Salmela" .
 
 <https://bio.tools/loretta> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0196,
@@ -277071,7 +286117,7 @@ Cloning has been an integral part of most laboratory research questions and cont
     biotools:primaryContact <https://orcid.org/0000-0001-7265-5960> .
 
 <https://bio.tools/lors> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0203,
@@ -277088,7 +286134,7 @@ Cloning has been an integral part of most laboratory research questions and cont
     biotools:primaryContact "Hongyu Zhao" .
 
 <https://bio.tools/lorsi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3068,
@@ -277103,23 +286149,8 @@ Cloning has been an integral part of most laboratory research questions and cont
     sc:name "LoRSI" ;
     sc:url "https://github.com/YakhiniGroup/LoRSI" .
 
-<https://bio.tools/los_hospitales_de_bajo_valor> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3512 ;
-    sc:citation <https://doi.org/10.1097/DCR.0000000000001523>,
-        "pmcid:PMC6895391",
-        "pubmed:31633600" ;
-    sc:description """Preventing Complications or Improving Efficiency.
-
-BACKGROUND:There is increased focus on the value of surgical care. Postoperative complications decrease value, but it is unknown whether high-value hospitals spend less than low-value hospitals in cases without complications. Previous studies have not evaluated both expenditures and validated outcomes in the same patients, limiting the understanding of interactions between clinical performance, efficient utilization of services, and costliness of surgical episodes. OBJECTIVE:This study aimed to identify payment differences between low- and high-value hospitals in colectomy cases without adverse outcomes using a linked data set of multipayer claims and validated clinical outcomes. DESIGN:This is a retrospective observational cohort study.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'los hospitales de alto valor', 'hospitales de bajo valor', 'bajo valor con casos sin', 'valor con casos sin resultados'""" ;
-    sc:name "los hospitales de bajo valor" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31633600" .
-
 <https://bio.tools/lot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3053 ;
@@ -277134,7 +286165,7 @@ BACKGROUND:There is increased focus on the value of surgical care. Postoperative
     sc:url "http://c2s2.yale.edu/software/LOT/" .
 
 <https://bio.tools/lotus-db> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0637,
         edam:topic_2258,
@@ -277155,7 +286186,7 @@ BACKGROUND:There is increased focus on the value of surgical care. Postoperative
         <http://orcid.org/0000-0003-3389-2191> .
 
 <https://bio.tools/lougehrigs-disease-detection-by-watershed> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0634 ;
     sc:description "Detection and analysis of Lou Gehrig's disease by using Watershed Techniques as well as clustering." ;
@@ -277170,7 +286201,7 @@ BACKGROUND:There is increased focus on the value of surgical care. Postoperative
     biotools:primaryContact "ALI  AKBAR" .
 
 <https://bio.tools/lovd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0085,
@@ -277193,7 +286224,7 @@ BACKGROUND:There is increased focus on the value of surgical care. Postoperative
     sc:url "http://www.lovd.nl/3.0/home" .
 
 <https://bio.tools/lowcomplexity> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -277214,32 +286245,53 @@ BACKGROUND:There is increased focus on the value of surgical care. Postoperative
     sc:url "http://wwwmgs.bionet.nsc.ru/mgs/programs/low_complexity/" ;
     biotools:primaryContact "Yury Orlov" .
 
+<https://bio.tools/lowki> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0622,
+        edam:topic_0625,
+        edam:topic_3500,
+        edam:topic_3673 ;
+    sc:citation <https://doi.org/10.21203/RS.3.RS-1109592/V1> ;
+    sc:description "Moment Estimators of Relatedness From Low-Depth Whole-Genome Sequencing Data." ;
+    sc:featureList edam:operation_3196,
+        edam:operation_3557,
+        edam:operation_3659 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "LowKi" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://htmlpreview.github.io/?https://github.com/genostats/LowKi/blob/master/doc/LowKi.html> ;
+    sc:url "https://github.com/genostats/LowKi" .
+
 <https://bio.tools/lowmaca> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2295" ;
-            sc:name "Gene ID" ;
-            sc:sameAs "http://edamontology.org/data_2295" ],
+            sc:additionalType "http://edamontology.org/data_2295" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Gene ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1138" ;
-            sc:name "Pfam accession number" ;
-            sc:sameAs "http://edamontology.org/data_1138" ] ;
+            sc:additionalType "http://edamontology.org/data_1138" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Pfam accession number" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2166" ;
-            sc:name "Sequence composition plot" ;
-            sc:sameAs "http://edamontology.org/data_2166" ],
+            sc:additionalType "http://edamontology.org/data_0867" ;
+            sc:encodingFormat "http://edamontology.org/format_3603" ;
+            sc:name "Sequence alignment report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1384" ;
-            sc:name "Sequence alignment (protein)" ;
-            sc:sameAs "http://edamontology.org/data_1384" ],
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3603" ;
+            sc:name "Plot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0867" ;
-            sc:name "Sequence alignment report" ;
-            sc:sameAs "http://edamontology.org/data_0867" ],
+            sc:additionalType "http://edamontology.org/data_2166" ;
+            sc:encodingFormat "http://edamontology.org/format_3603" ;
+            sc:name "Sequence composition plot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1384" ;
+            sc:encodingFormat "http://edamontology.org/format_3603" ;
+            sc:name "Sequence alignment (protein)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0078,
@@ -277263,7 +286315,7 @@ BACKGROUND:There is increased focus on the value of surgical care. Postoperative
         <http://orcid.org/0000-0003-1103-7688> .
 
 <https://bio.tools/lox> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3168 ;
@@ -277279,7 +286331,7 @@ BACKGROUND:There is increased focus on the value of surgical care. Postoperative
     biotools:primaryContact "Townsend Lab" .
 
 <https://bio.tools/lp-hclus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_0659,
@@ -277298,7 +286350,7 @@ The system LP-HCLUS and all the necessary files(lphclus.zip).""" ;
     sc:url "http://www.di.uniba.it/~gianvitopio/systems/lphclus/" .
 
 <https://bio.tools/lpcf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0623,
@@ -277315,7 +286367,7 @@ The system LP-HCLUS and all the necessary files(lphclus.zip).""" ;
     biotools:primaryContact "Konstantin Voevodski" .
 
 <https://bio.tools/lpdr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0625,
@@ -277333,7 +286385,7 @@ The system LP-HCLUS and all the necessary files(lphclus.zip).""" ;
     biotools:primaryContact <https://orcid.org/0000-0001-6621-1247> .
 
 <https://bio.tools/lpe> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -277353,7 +286405,7 @@ The system LP-HCLUS and all the necessary files(lphclus.zip).""" ;
     biotools:primaryContact "Nitin Jain" .
 
 <https://bio.tools/lpeadj> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2269,
@@ -277372,7 +286424,7 @@ The system LP-HCLUS and all the necessary files(lphclus.zip).""" ;
     biotools:primaryContact "Carl Murie" .
 
 <https://bio.tools/lpi-cnncp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0154,
@@ -277390,8 +286442,29 @@ LPI-CNNCP designs a copy-padding trick to turn the protein/RNA sequences with va
     sc:name "LPI-CNNCP" ;
     sc:url "https://github.com/NWPU-903PR/LPI-CNNCP" .
 
+<https://bio.tools/lpi-csffr> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0128,
+        edam:topic_0659,
+        edam:topic_3474,
+        edam:topic_3500 ;
+    sc:citation <https://doi.org/10.1016/J.COMPBIOLCHEM.2022.107718>,
+        "pubmed:35785626" ;
+    sc:description "A computational method LPI-CSFFR to predict lncRNA-protein interactions from sequences, secondary structure, and physicochemical property, which makes use of deep learning CNN and further improve its performance using feature reuse strategy." ;
+    sc:featureList edam:operation_0267,
+        edam:operation_2492,
+        edam:operation_3094 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "LPI-CSFFR" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/JianjunTan-Beijing/LPI-CSFFR" .
+
 <https://bio.tools/lpi-skf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0128,
@@ -277410,11 +286483,10 @@ This model is proposed to predict lncRNA-protein interactions, which can be summ
     sc:url "https://github.com/zyk2118216069/LPI-SKF" .
 
 <https://bio.tools/lpicom> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
-        edam:topic_2814,
-        edam:topic_3557 ;
+        edam:topic_2814 ;
     sc:citation "pubmed:27016210" ;
     sc:description "Web server developed for understanding protein-ligand interaction for almost all ligands available in Protein Data Bank." ;
     sc:featureList edam:operation_2949 ;
@@ -277423,10 +286495,33 @@ This model is proposed to predict lncRNA-protein interactions, which can be summ
         "Mac",
         "Windows" ;
     sc:softwareHelp <http://crdd.osdd.net/raghava/lpicom/help.php> ;
-    sc:url "http://crdd.osdd.net/raghava/lpicom/" .
+    sc:url "http://webs.iiitd.edu.in/raghava/lpicom/" .
+
+<https://bio.tools/lpinsider> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0218,
+        edam:topic_0634,
+        edam:topic_0659,
+        edam:topic_3300,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1186/S12859-022-04665-3>,
+        "pmcid:PMC9013167",
+        "pubmed:35428172" ;
+    sc:description "A webserver for lncRNA-protein interaction extraction from the literature." ;
+    sc:featureList edam:operation_3280,
+        edam:operation_3625,
+        edam:operation_3659 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Apache-2.0" ;
+    sc:name "LPInsider" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://www.csbg-jlu.info/LPInsider/" .
 
 <https://bio.tools/lpmx> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3316,
         edam:topic_3382 ;
@@ -277441,7 +286536,7 @@ This model is proposed to predict lncRNA-protein interactions, which can be summ
     sc:url "https://github.com/jasonyangshadow/lpmx" .
 
 <https://bio.tools/lpnet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0204,
@@ -277461,7 +286556,7 @@ This model is proposed to predict lncRNA-protein interactions, which can be summ
     biotools:primaryContact "Lars Kaderali" .
 
 <https://bio.tools/lpph> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0625,
@@ -277477,7 +286572,7 @@ This model is proposed to predict lncRNA-protein interactions, which can be summ
     biotools:primaryContact "Dan Gusfield" .
 
 <https://bio.tools/lpptiger> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0153,
@@ -277493,7 +286588,7 @@ This model is proposed to predict lncRNA-protein interactions, which can be summ
     biotools:primaryContact "Issue tracker" .
 
 <https://bio.tools/lpsymphony> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0605 ;
@@ -277510,8 +286605,28 @@ This model is proposed to predict lncRNA-protein interactions, which can be summ
     sc:url "http://bioconductor.org/packages/release/bioc/html/lpsymphony.html" ;
     biotools:primaryContact "Vladislav Kim" .
 
+<https://bio.tools/lptd> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Desktop application",
+        "Library" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_0736,
+        edam:topic_3315,
+        edam:topic_3382,
+        edam:topic_3542 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC170>,
+        "pubmed:35311956" ;
+    sc:description "The LPTD is an automatic topology determination method for intermediate resolution cryo-EM maps." ;
+    sc:featureList edam:operation_0319,
+        edam:operation_2429,
+        edam:operation_2488 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "LPTD" ;
+    sc:url "https://github.com/B-Behkamal/LPTD" .
+
 <https://bio.tools/lpwc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0621,
@@ -277532,7 +286647,7 @@ Lag Penalized Weighted Correlation (LPWC) is a method for clustering short time
     sc:url "https://github.com/gitter-lab/LPWC" .
 
 <https://bio.tools/lqas-imp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3393,
@@ -277548,7 +286663,7 @@ The goal is to classify an area as “high” or “low” on some trait of inte
     sc:url "https://github.com/isabelfulcher/lqas_imp" .
 
 <https://bio.tools/lra> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0091,
@@ -277571,7 +286686,7 @@ Long read aligner for sequences and contigs.""" ;
     sc:url "https://anaconda.org/bioconda/lra" .
 
 <https://bio.tools/lracluster> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3047,
@@ -277587,8 +286702,32 @@ Long read aligner for sequences and contigs.""" ;
     biotools:primaryContact "Dingming Wu",
         "Jin Gu" .
 
+<https://bio.tools/lrbinner> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0196,
+        edam:topic_3174,
+        edam:topic_3277,
+        edam:topic_3474,
+        edam:topic_3837 ;
+    sc:citation <https://doi.org/10.1186/S13015-022-00221-Z>,
+        "pmcid:PMC9277797",
+        "pubmed:35821155" ;
+    sc:description "Binning long reads in metagenomics datasets using composition and coverage information." ;
+    sc:featureList edam:operation_0310,
+        edam:operation_3432,
+        edam:operation_3472,
+        edam:operation_3798 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-2.0" ;
+    sc:name "LRBinner" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/anuradhawick/LRBinner" .
+
 <https://bio.tools/lrc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0804,
         edam:topic_2229,
@@ -277605,8 +286744,26 @@ Long read aligner for sequences and contigs.""" ;
     sc:url "http://bs.ipm.ir/softwares/LRC/" ;
     biotools:primaryContact "School of Biological Sciences" .
 
+<https://bio.tools/lrd> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0102 ;
+    sc:citation <https://doi.org/10.3758/S13428-021-01718-Y>,
+        "pubmed:34850358" ;
+    sc:description "An R package and Shiny application for processing lexical data." ;
+    sc:featureList edam:operation_0335,
+        edam:operation_2422,
+        edam:operation_3096 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "lrd" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/npm27/lrd" .
+
 <https://bio.tools/lre-analysis-rtpcr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3344,
@@ -277625,7 +286782,7 @@ Long read aligner for sequences and contigs.""" ;
     biotools:primaryContact "Diane" .
 
 <https://bio.tools/lrensemble> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0621 ;
@@ -277641,8 +286798,44 @@ Long read aligner for sequences and contigs.""" ;
     sc:softwareHelp <http://mleg.cse.sc.edu/LRensemble/link1.htm> ;
     sc:url "http://mleg.cse.sc.edu/LRensemble/cgi-bin/index.html" .
 
+<https://bio.tools/lrgapcloser> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Script" ;
+    sc:applicationSubCategory edam:topic_0196 ;
+    sc:citation <https://doi.org/10.1093/gigascience/giy157> ;
+    sc:description "LR_Gapcloser is a gap closing tool using long reads from studied species. The long reads could be downloaed from public read archive database (for instance, NCBI SRA database ) or be your own data. Then they are fragmented and aligned to scaffolds using BWA mem algorithm in BWA package. In the package, we provided a compiled bwa, so the user needn't to install bwa. LR_Gapcloser uses the alignments to find the bridging that cross the gap, and then fills the long read original sequence into the genomic gaps." ;
+    sc:featureList edam:operation_3217 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "LR_Gapcloser" ;
+    sc:url "https://github.com/CAFS-bioinformatics/LR_Gapcloser" ;
+    biotools:primaryContact <https://orcid.org/0000-0002-7277-1942> .
+
+<https://bio.tools/lrgcpnd> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0659,
+        edam:topic_2640,
+        edam:topic_3360,
+        edam:topic_3373 ;
+    sc:citation <https://doi.org/10.3390/IJMS221910508>,
+        "pmcid:PMC8508984",
+        "pubmed:34638849" ;
+    sc:description "Predicting Associations between ncRNA and Drug Resistance via Linear Residual Graph Convolution." ;
+    sc:featureList edam:operation_0321,
+        edam:operation_3436,
+        edam:operation_3625 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "LRGCPND" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/TroyePlus/LRGCPND" .
+
 <https://bio.tools/lriscan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0602,
@@ -277660,8 +286853,29 @@ Long read aligner for sequences and contigs.""" ;
     sc:url "http://www.rna.uni-jena.de/en/software/" ;
     biotools:primaryContact "Marcus Fricke" .
 
+<https://bio.tools/lrloop> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0602,
+        edam:topic_2229,
+        edam:topic_3170 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC447>,
+        "pubmed:35788263" ;
+    sc:description "LRLoop is a full-featured R package for analyzing LR-Loops from bulk & single-cell RNA-seq data." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_2437,
+        edam:operation_2492 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "LRLoop" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/Pinlyu3/LRLoop" .
+
 <https://bio.tools/lrmotifs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654 ;
     sc:citation <https://doi.org/10.1371/journal.pone.0047836> ;
@@ -277674,7 +286888,7 @@ Long read aligner for sequences and contigs.""" ;
     sc:url "http://code.google.com/p/likelihood-ratio-motifs/" .
 
 <https://bio.tools/lrod> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0196,
@@ -277692,7 +286906,7 @@ LROD can detect overlap regions among long reads.""" ;
     sc:url "https://github.com/luojunwei/LROD" .
 
 <https://bio.tools/lrpath> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -277709,7 +286923,7 @@ LROD can detect overlap regions among long reads.""" ;
     sc:url "http://lrpath.ncibi.org/" .
 
 <https://bio.tools/lrrr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_2275 ;
@@ -277725,7 +286939,7 @@ LROD can detect overlap regions among long reads.""" ;
     biotools:primaryContact "Admin" .
 
 <https://bio.tools/lrrsearch> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
@@ -277744,8 +286958,26 @@ LROD can detect overlap regions among long reads.""" ;
     sc:url "http://www.lrrsearch.com/" ;
     biotools:primaryContact "Support" .
 
+<https://bio.tools/lrwrhlda> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workbench" ;
+    sc:applicationSubCategory edam:topic_0602,
+        edam:topic_0634,
+        edam:topic_0659,
+        edam:topic_2640 ;
+    sc:citation <https://doi.org/10.1186/S12859-021-04538-1>,
+        "pmcid:PMC8729064",
+        "pubmed:34983367" ;
+    sc:description "Prediction of lncRNA-disease association based on a Laplace normalized random walk with restart algorithm on heterogeneous networks." ;
+    sc:featureList edam:operation_0463,
+        edam:operation_3435,
+        edam:operation_3927 ;
+    sc:license "Not licensed" ;
+    sc:name "LRWRHLDA" ;
+    sc:url "https://github.com/wang-124/LRWRHLDA.git" .
+
 <https://bio.tools/ls-snp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_2885,
@@ -277762,7 +286994,7 @@ LROD can detect overlap regions among long reads.""" ;
     sc:url "http://ls-snp.icm.jhu.edu/ls-snp-pdb/" .
 
 <https://bio.tools/lsc-cnn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3382 ;
     sc:citation <https://doi.org/10.1109/TPAMI.2020.2974830>,
@@ -277777,7 +287009,7 @@ This repository is the pytorch implementation for the crowd counting model, LSC-
     sc:url "https://github.com/val-iisc/lsc-cnn" .
 
 <https://bio.tools/lsd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0625,
@@ -277797,8 +287029,18 @@ This repository is the pytorch implementation for the crowd counting model, LSC-
     sc:url "http://psd.cbi.pku.edu.cn/" ;
     biotools:primaryContact "Jingchu Luo" .
 
+<https://bio.tools/lsdate> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_3293 ;
+    sc:citation <https://doi.org/10.1093/sysbio/syv068> ;
+    sc:description "Fast dating using least-squares criteria and algorithms" ;
+    sc:name "LSD" ;
+    sc:operatingSystem "Linux" ;
+    sc:url "http://www.atgc-montpellier.fr/LSD/" .
+
 <https://bio.tools/lsgsp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654 ;
     sc:description "LSGSP is the java codes which provided for use on this site are not part of the book Large-Scale Genome Sequence Processing published by Imperial College Press" ;
@@ -277810,7 +287052,7 @@ This repository is the pytorch implementation for the crowd counting model, LSC-
     sc:url "http://mlab.cb.k.u-tokyo.ac.jp/~moris/LSGSP/" .
 
 <https://bio.tools/lsim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2275,
         edam:topic_2814 ;
@@ -277823,7 +287065,7 @@ This repository is the pytorch implementation for the crowd counting model, LSC-
     sc:url "http://www.molspaces.com/d_lsim-overview.php" .
 
 <https://bio.tools/lskb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0769 ;
@@ -277841,7 +287083,7 @@ This repository is the pytorch implementation for the crowd counting model, LSC-
     biotools:primaryContact "Support" .
 
 <https://bio.tools/lsm-file-reader> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3318,
@@ -277859,7 +287101,7 @@ This repository is the pytorch implementation for the crowd counting model, LSC-
     biotools:primaryContact "CY Y" .
 
 <https://bio.tools/lsm-file-toolbox> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -277875,7 +287117,7 @@ This repository is the pytorch implementation for the crowd counting model, LSC-
     biotools:primaryContact "Peter Li" .
 
 <https://bio.tools/lsnmf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203 ;
     sc:citation <https://doi.org/10.1186/1471-2105-7-175> ;
@@ -277887,7 +287129,7 @@ This repository is the pytorch implementation for the crowd counting model, LSC-
     sc:url "http://bioinformatics.fccc.edu/software/OpenSource/LS-NMF/lsnmf.shtml" .
 
 <https://bio.tools/lspr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btr041> ;
@@ -277901,7 +287143,7 @@ This repository is the pytorch implementation for the crowd counting model, LSC-
     sc:url "http://bioinformatics.cau.edu.cn/LSPR/" .
 
 <https://bio.tools/lsr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3053,
@@ -277914,7 +287156,7 @@ This repository is the pytorch implementation for the crowd counting model, LSC-
     sc:url "http://www.csjfann.ibms.sinica.edu.tw/eag/programlist/LSR/LSR.html" .
 
 <https://bio.tools/lstm-phv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0154,
@@ -277931,7 +287173,7 @@ This repository is the pytorch implementation for the crowd counting model, LSC-
     biotools:primaryContact <https://orcid.org/0000-0003-4254-2214> .
 
 <https://bio.tools/lstrap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -277949,7 +287191,7 @@ This repository is the pytorch implementation for the crowd counting model, LSC-
     biotools:primaryContact "Marek Mutwil" .
 
 <https://bio.tools/lstrap-cloud> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0749,
@@ -277973,7 +287215,7 @@ LSTrAP-Cloud is a pipeline designed for building co-expression networks from RNA
     sc:url "https://github.com/tqiaowen/LSTrAP-Cloud" .
 
 <https://bio.tools/lstrap-kingdom> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0780,
@@ -277987,8 +287229,27 @@ By NTU Plants Systems Biology and Evolution Laboratory.""" ;
     sc:name "LSTrAP-Kingdom" ;
     sc:url "https://github.com/wirriamm/plants-pipeline" .
 
+<https://bio.tools/ltm-tcm> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0202,
+        edam:topic_0218,
+        edam:topic_0625,
+        edam:topic_3303,
+        edam:topic_3336 ;
+    sc:citation <https://doi.org/10.1016/J.PHRS.2022.106185>,
+        "pubmed:35306140" ;
+    sc:description "A comprehensive database for the linking of Traditional Chinese Medicine with modern medicine at molecular and phenotypic levels." ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "LTM-TCM" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://cloud.tasly.com/#/tcm/home" .
+
 <https://bio.tools/ltr-finder-p> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0157,
         edam:topic_0749,
@@ -277999,7 +287260,7 @@ By NTU Plants Systems Biology and Evolution Laboratory.""" ;
     sc:url "https://github.com/oushujun/LTR_FINDER_parallel" .
 
 <https://bio.tools/ltr_finder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0157,
         edam:topic_0622,
@@ -278014,8 +287275,20 @@ By NTU Plants Systems Biology and Evolution Laboratory.""" ;
     sc:url "http://tlife.fudan.edu.cn/ltr_finder/" ;
     biotools:primaryContact "Webmaster" .
 
+<https://bio.tools/ltr_retriever> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:citation <https://doi.org/10.1104/pp.17.01310> ;
+    sc:description "LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also included in this package." ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "LTR_retriever" ;
+    sc:url "https://github.com/oushujun/LTR_retriever" ;
+    biotools:primaryContact <https://orcid.org/0000-0001-5938-7180>,
+        <https://orcid.org/0000-0002-2776-6669> .
+
 <https://bio.tools/ltr_struc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654,
@@ -278030,7 +287303,7 @@ By NTU Plants Systems Biology and Evolution Laboratory.""" ;
     sc:url "http://www.mcdonaldlab.biology.gatech.edu/ltr_struc.htm" .
 
 <https://bio.tools/ltrtype> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0160,
@@ -278048,7 +287321,7 @@ By NTU Plants Systems Biology and Evolution Laboratory.""" ;
     biotools:primaryContact "Li-Zhi Gao" .
 
 <https://bio.tools/ltsoft> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_3053,
@@ -278062,7 +287335,7 @@ By NTU Plants Systems Biology and Evolution Laboratory.""" ;
     sc:url "http://www.hsph.harvard.edu/alkes-price/software/" .
 
 <https://bio.tools/luca> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3053,
@@ -278078,7 +287351,7 @@ By NTU Plants Systems Biology and Evolution Laboratory.""" ;
     sc:url "http://stat.sfu.ca/statgen/research/luca.html" .
 
 <https://bio.tools/lucegene> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0654,
@@ -278095,7 +287368,7 @@ By NTU Plants Systems Biology and Evolution Laboratory.""" ;
     sc:url "http://www.gmod.org/wiki/LuceGene" .
 
 <https://bio.tools/luciphor2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0601,
@@ -278113,22 +287386,18 @@ By NTU Plants Systems Biology and Evolution Laboratory.""" ;
 
 <https://bio.tools/lucy> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3497" ;
-            sc:name "DNA sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_3497" ],
+            sc:additionalType "http://edamontology.org/data_3497" ;
+            sc:name "DNA sequence (raw)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3497" ;
-            sc:name "DNA sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_3497" ] ;
+            sc:additionalType "http://edamontology.org/data_3497" ;
+            sc:name "DNA sequence (raw)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1772" ;
-            sc:name "Score" ;
-            sc:sameAs "http://edamontology.org/data_1772" ],
+            sc:additionalType "http://edamontology.org/data_1772" ;
+            sc:name "Score" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3494" ;
-            sc:name "DNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3494" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:name "DNA sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3572 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/17.12.1093> ;
@@ -278146,7 +287415,7 @@ By NTU Plants Systems Biology and Evolution Laboratory.""" ;
         "Michael Holmes" .
 
 <https://bio.tools/luevari> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2885,
         edam:topic_3174,
@@ -278164,7 +287433,7 @@ LueVari is a reference free metagenome SNP caller, based on the read-colored de
     sc:url "https://github.com/baharpan/cosmo/tree/LueVari" .
 
 <https://bio.tools/lumi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3053,
@@ -278186,7 +287455,7 @@ LueVari is a reference free metagenome SNP caller, based on the read-colored de
     biotools:primaryContact "Pan Du" .
 
 <https://bio.tools/lumi-pcr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Script" ;
     sc:applicationSubCategory edam:topic_0632,
@@ -278207,7 +287476,7 @@ LueVari is a reference free metagenome SNP caller, based on the read-colored de
     sc:url "https://github.com/anthonyuren/LUMI-PCR-pipeline/" .
 
 <https://bio.tools/luminate> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3524,
@@ -278226,7 +287495,7 @@ Note: Estimates of cLV parameters with LUMINATE is considered experimental. To t
     sc:url "https://github.com/tyjo/luminate" .
 
 <https://bio.tools/luminous> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_3071,
         edam:topic_3452,
@@ -278244,16 +287513,21 @@ LUMINOUS Database: Lumbar MUltifidus Muscle SegmentatIoN FrOm UltraSound.""" ;
     sc:url "http://data.sonography.ai" .
 
 <https://bio.tools/lumpy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3175 ;
     sc:citation <https://doi.org/10.1186/gb-2014-15-6-r84> ;
     sc:description "A novel SV discovery framework that naturally integrates multiple SV signals jointly across multiple samples. We show that LUMPY yields improved sensitivity, especially when SV signal is reduced owing to either low coverage data or low intra-sample variant allele frequency." ;
     sc:featureList edam:operation_3228 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
     sc:name "lumpy" ;
-    sc:url "https://github.com/arq5x/lumpy-sv" .
+    sc:url "https://github.com/arq5x/lumpy-sv" ;
+    biotools:primaryContact "Aaron R Quinlan",
+        "Ira M Hall" .
 
 <https://bio.tools/lung> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0634,
@@ -278279,14 +287553,12 @@ Notice: Use of undefined constant filterByMrna - assumed 'filterByMrna' in /var/
 
 <https://bio.tools/lunggens> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1026" ;
-            sc:name "Gene symbol" ;
-            sc:sameAs "http://edamontology.org/data_1026" ] ;
+            sc:additionalType "http://edamontology.org/data_1026" ;
+            sc:name "Gene symbol" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Gene expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:name "Gene expression data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3170,
@@ -278305,18 +287577,18 @@ Notice: Use of undefined constant filterByMrna - assumed 'filterByMrna' in /var/
 
 <https://bio.tools/lutefisk> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0850" ;
-            sc:name "Sequence set" ;
-            sc:sameAs "http://edamontology.org/data_0850" ],
+            sc:additionalType "http://edamontology.org/data_0850" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Sequence set" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3652" ;
+            sc:name "Mass spectrometry spectra" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0850" ;
-            sc:name "Sequence set" ;
-            sc:sameAs "http://edamontology.org/data_0850" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0850" ;
+            sc:encodingFormat "http://edamontology.org/format_1919" ;
+            sc:name "Sequence set" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -278333,7 +287605,7 @@ Notice: Use of undefined constant filterByMrna - assumed 'filterByMrna' in /var/
     sc:url "http://www.hairyfatguy.com/lutefisk" .
 
 <https://bio.tools/lutefiskxp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_3520 ;
@@ -278352,14 +287624,13 @@ Notice: Use of undefined constant filterByMrna - assumed 'filterByMrna' in /var/
 
 <https://bio.tools/lux_score> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2905" ;
-            sc:name "Lipid accession" ;
-            sc:sameAs "http://edamontology.org/data_2905" ] ;
+            sc:additionalType "http://edamontology.org/data_2905" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Lipid accession" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0842" ;
-            sc:name "Identifier" ;
-            sc:sameAs "http://edamontology.org/data_0842" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0842" ;
+            sc:name "Identifier" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0153 ;
     sc:citation <https://doi.org/10.1371/journal.pcbi.1004511> ;
@@ -278372,8 +287643,30 @@ Notice: Use of undefined constant filterByMrna - assumed 'filterByMrna' in /var/
     sc:softwareHelp <https://lifs.isas.de/index.php/lux-score> ;
     sc:url "http://lifs.isas.de/index.php/lux-score" .
 
+<https://bio.tools/luxrep> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Workflow" ;
+    sc:applicationSubCategory edam:topic_0654,
+        edam:topic_3168,
+        edam:topic_3295,
+        edam:topic_3674 ;
+    sc:citation <https://doi.org/10.1186/S12859-021-04546-1>,
+        "pmcid:PMC8760685",
+        "pubmed:35030989" ;
+    sc:description "LuxRep is a genome wide methylation analysis tool that models different bisulphite-converted DNA libraries from the same biological replicate (i.e., technical replicates) thereby allowing use of libraries of even low bisulphite conversion rates." ;
+    sc:featureList edam:operation_3186,
+        edam:operation_3207,
+        edam:operation_3919 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "LuxRep" ;
+    sc:operatingSystem "Linux",
+        "Mac" ;
+    sc:url "https://github.com/tare/LuxGLM/tree/master/LuxRep" .
+
 <https://bio.tools/luxus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3292,
@@ -278393,7 +287686,7 @@ LuxGLM Using Spatial correlation (LuxUS) is a tool for differential methylation
     sc:url "https://github.com/hallav/LuxUS" .
 
 <https://bio.tools/lvdatamap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3444 ;
@@ -278411,7 +287704,7 @@ LuxGLM Using Spatial correlation (LuxUS) is a tool for differential methylation
     biotools:primaryContact "Thien-Khoi N. Phung" .
 
 <https://bio.tools/lvsmirna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -278431,7 +287724,7 @@ LuxGLM Using Spatial correlation (LuxUS) is a tool for differential methylation
     biotools:primaryContact "Stefano Calza" .
 
 <https://bio.tools/lwgv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0622,
@@ -278448,7 +287741,7 @@ LuxGLM Using Spatial correlation (LuxUS) is a tool for differential methylation
     biotools:primaryContact "Jeremiah Faith" .
 
 <https://bio.tools/lxtoo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_3372 ;
@@ -278461,7 +287754,7 @@ LuxGLM Using Spatial correlation (LuxUS) is a tool for differential methylation
     sc:url "http://bioinformatics.jnu.edu.cn/LXtoo/" .
 
 <https://bio.tools/lymanalyzer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_0804,
@@ -278479,7 +287772,7 @@ LuxGLM Using Spatial correlation (LuxUS) is a tool for differential methylation
     biotools:primaryContact "cathal.seoighe@nuigalway.ie" .
 
 <https://bio.tools/lymphoatlas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0108,
@@ -278499,7 +287792,7 @@ Shiny application to visualise phospho-kinetics upon TCR activation.""" ;
     sc:url "https://bmm-lab.github.io/LymphoAtlas" .
 
 <https://bio.tools/lymphoseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0080 ;
@@ -278516,7 +287809,7 @@ Shiny application to visualise phospho-kinetics upon TCR activation.""" ;
     biotools:primaryContact "David Coffey" .
 
 <https://bio.tools/lynx_multi-gene_annotations> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0602,
@@ -278535,7 +287828,7 @@ Shiny application to visualise phospho-kinetics upon TCR activation.""" ;
     sc:url "http://lynx.ci.uchicago.edu/webservices.html" .
 
 <https://bio.tools/lyrus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0199,
         edam:topic_0634,
@@ -278551,7 +287844,7 @@ Shiny application to visualise phospho-kinetics upon TCR activation.""" ;
     sc:url "https://github.com/jiaying2508/LYRUS" .
 
 <https://bio.tools/lzerd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2275 ;
     sc:citation <https://doi.org/10.1002/prot.24079>,
@@ -278566,7 +287859,7 @@ Shiny application to visualise phospho-kinetics upon TCR activation.""" ;
     sc:url "http://kiharalab.org/proteindocking/lzerd.php" .
 
 <https://bio.tools/lzw-kernel> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -278581,7 +287874,7 @@ Shiny application to visualise phospho-kinetics upon TCR activation.""" ;
     biotools:primaryContact "Attila Kertész-Farkas" .
 
 <https://bio.tools/m-bison> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -278597,26 +287890,21 @@ Shiny application to visualise phospho-kinetics upon TCR activation.""" ;
 
 <https://bio.tools/m-iolite> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0984" ;
-            sc:name "Molecule name" ;
-            sc:sameAs "http://edamontology.org/data_0984" ],
+            sc:additionalType "http://edamontology.org/data_0984" ;
+            sc:name "Molecule name" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ],
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:name "Mass spectrometry data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1864" ;
-            sc:name "Map set data" ;
-            sc:sameAs "http://edamontology.org/data_1864" ],
+            sc:additionalType "http://edamontology.org/data_0990" ;
+            sc:name "Compound name" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0990" ;
-            sc:name "Compound name" ;
-            sc:sameAs "http://edamontology.org/data_0990" ],
+            sc:additionalType "http://edamontology.org/data_1864" ;
+            sc:name "Map set data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1154" ;
-            sc:name "KEGG object identifier" ;
-            sc:sameAs "http://edamontology.org/data_1154" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1154" ;
+            sc:name "KEGG object identifier" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Desktop application",
         "Suite",
@@ -278651,7 +287939,7 @@ Shiny application to visualise phospho-kinetics upon TCR activation.""" ;
     biotools:primaryContact "Maria I Klapa" .
 
 <https://bio.tools/m-path> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2259,
@@ -278668,22 +287956,22 @@ Shiny application to visualise phospho-kinetics upon TCR activation.""" ;
 
 <https://bio.tools/m2aia> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ],
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3682" ;
+            sc:name "Image" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ] ;
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3551" ;
+            sc:name "Image" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ],
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3551" ;
+            sc:name "Image" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3682" ;
+            sc:name "Image" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0091 ;
@@ -278703,7 +287991,7 @@ Shiny application to visualise phospho-kinetics upon TCR activation.""" ;
     sc:url "https://www.m2aia.de" .
 
 <https://bio.tools/m2gmda> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_0659,
@@ -278724,7 +288012,7 @@ Predicting MiRNA-disease Associations by Multiple Meta-paths Fusion Graph Embedd
     sc:url "https://github.com/dangdangzhang/M2GMDA" .
 
 <https://bio.tools/m2ia> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0602,
@@ -278744,7 +288032,7 @@ M2IA is a web-based server for the Microbiome and Metabolome data integration an
     sc:url "http://m2ia.met-bioinformatics.cn" .
 
 <https://bio.tools/m2lite> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3071 ;
@@ -278758,8 +288046,31 @@ M2IA is a web-based server for the Microbiome and Metabolome data integration an
     sc:softwareHelp <https://bitbucket.org/paiyetan/m2lite/wiki/Home> ;
     sc:url "https://bitbucket.org/paiyetan/m2lite" .
 
+<https://bio.tools/m2pp> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workbench" ;
+    sc:applicationSubCategory edam:topic_0078,
+        edam:topic_0154,
+        edam:topic_0602,
+        edam:topic_0634,
+        edam:topic_3335 ;
+    sc:citation <https://doi.org/10.1186/S12859-021-04522-9>,
+        "pmcid:PMC8728953",
+        "pubmed:34983358" ;
+    sc:description "a computational model for predicting drug-targeted pathogenic proteins" ;
+    sc:featureList edam:operation_2489,
+        edam:operation_3094,
+        edam:operation_3461,
+        edam:operation_3659 ;
+    sc:license "Not licensed" ;
+    sc:name "M2PP" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/shimingwang1994/M2PP.git" .
+
 <https://bio.tools/m2r> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0625,
@@ -278778,7 +288089,7 @@ Microbiota-to-Recon (M2R) program.""" ;
     sc:url "https://github.com/e-weglarz-tomczak/m2r" .
 
 <https://bio.tools/m3> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2885,
         edam:topic_3053,
@@ -278794,7 +288105,7 @@ Microbiota-to-Recon (M2R) program.""" ;
     sc:url "http://zhaocenter.org/software/#Genomic_Expression_Pathway_Analysis" .
 
 <https://bio.tools/m3c> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3168,
@@ -278811,8 +288122,28 @@ Microbiota-to-Recon (M2R) program.""" ;
     sc:url "http://bioconductor.org/packages/release/bioc/html/M3C.html" ;
     biotools:primaryContact "Christopher John" .
 
+<https://bio.tools/m3cs> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0108,
+        edam:topic_0218,
+        edam:topic_0659,
+        edam:topic_2640,
+        edam:topic_3063 ;
+    sc:citation <https://doi.org/10.1093/DATABASE/BAAC013>,
+        "pubmed:35303059" ;
+    sc:description "MicroRNA childhood Cancer Catalog (M3Cs) is a high-quality curated collection of published miRNA research studies on 16 pediatric cancer diseases." ;
+    sc:featureList edam:operation_0306,
+        edam:operation_3436,
+        edam:operation_3454 ;
+    sc:name "M3Cs" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://m3cs.shinyapps.io/M3Cs/" .
+
 <https://bio.tools/m3d> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0097,
@@ -278832,7 +288163,7 @@ Microbiota-to-Recon (M2R) program.""" ;
     biotools:primaryContact "Tom Mayo" .
 
 <https://bio.tools/m3diseen> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_3303,
         edam:topic_3374,
@@ -278847,7 +288178,7 @@ Select a tested drug product Example 1 Example 2 Example 3 Example 4 Load materi
     sc:url "http://m3diseen.com/predictions/" .
 
 <https://bio.tools/m3drop> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -278867,7 +288198,7 @@ Select a tested drug product Example 1 Example 2 Example 3 Example 4 Load materi
     biotools:primaryContact "Tallulah Andrews" .
 
 <https://bio.tools/m4t> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -278889,8 +288220,33 @@ Select a tested drug product Example 1 Example 2 Example 3 Example 4 Load materi
     sc:softwareHelp <http://manaslu.fiserlab.org/M4T/help.html#target> ;
     sc:url "http://manaslu.fiserlab.org/M4T/" .
 
+<https://bio.tools/m5c-atlas> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0659,
+        edam:topic_2885,
+        edam:topic_3320,
+        edam:topic_3512,
+        edam:topic_3674 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAB1075>,
+        "pmcid:PMC8728298",
+        "pubmed:34986603" ;
+    sc:description "A database for decoding and annotating the 5-methylcytosine (m5C) epitranscriptome." ;
+    sc:featureList edam:operation_0278,
+        edam:operation_0314,
+        edam:operation_0463,
+        edam:operation_0502 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "m5C-Atlas" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://www.xjtlu.edu.cn/biologicalsciences/m5c-atlas" .
+
 <https://bio.tools/m5cpred-svm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0780,
@@ -278913,7 +288269,7 @@ A webserver for m5C Sites Identification of RNA. m5CPred-SVM was developed by us
     sc:url "http://zhulab.ahu.edu.cn/m5CPred-SVM" .
 
 <https://bio.tools/m5upred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_3295,
@@ -278933,7 +288289,7 @@ As one of the widely occurring RNA modifications, 5-methyluridine (m5U) has rece
     sc:url "https://www.xjtlu.edu.cn/biologicalsciences/m5u" .
 
 <https://bio.tools/m6Acomet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0659,
@@ -278955,8 +288311,29 @@ As one of the widely occurring RNA modifications, 5-methyluridine (m5U) has rece
     sc:url "http://xjtlu.edu.cn/biologicalsciences/m6acomet" ;
     biotools:primaryContact "Jia Meng" .
 
+<https://bio.tools/m6_aexpress-reader> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0204,
+        edam:topic_0602,
+        edam:topic_2640,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.1016/J.YMETH.2022.03.008>,
+        "pubmed:35314342" ;
+    sc:description "Prediction of m6A regulated expression genes by integrating m6A sites and reader binding information in specific- context" ;
+    sc:featureList edam:operation_2495,
+        edam:operation_2575,
+        edam:operation_3222 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "m6 Aexpress-Reader" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/NWPU-903PR/m6AexpressReader" .
+
 <https://bio.tools/m6a-express> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0659,
@@ -278978,8 +288355,34 @@ As one of the widely occurring RNA modifications, 5-methyluridine (m5U) has rece
         "Windows" ;
     sc:url "https://github.com/Yufei-Huang-Lab/m6Aexpress" .
 
+<https://bio.tools/m6a-tshub> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2299" ;
+            sc:name "Gene name" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_3264" ;
+            sc:name "COSMIC ID" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0199,
+        edam:topic_0659,
+        edam:topic_2640,
+        edam:topic_3295,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.1101/2022.01.12.476117> ;
+    sc:description "Unveiling the context-specific m6A methylation and m6A-affecting mutations in 23 human tissues." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_0331,
+        edam:operation_0417 ;
+    sc:isAccessibleForFree true ;
+    sc:name "m6A-TSHub" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://www.xjtlu.edu.cn/biologicalsciences/m6ats" .
+
 <https://bio.tools/m6a2target> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3170,
@@ -278996,7 +288399,7 @@ N6-methyladenosine (m6A) is the most abundant posttranscriptional modification i
     sc:url "http://m6a2target.canceromics.org" .
 
 <https://bio.tools/m6add> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0634,
@@ -279013,8 +288416,27 @@ N6-methyladenosine (m6A) is the most abundant posttranscriptional modification i
     sc:url "http://m6add.edbc.org/" ;
     biotools:primaryContact "Yan Zhang" .
 
+<https://bio.tools/m6adecom> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0099,
+        edam:topic_0602,
+        edam:topic_3295 ;
+    sc:citation <https://doi.org/10.1016/J.YMETH.2022.01.007>,
+        "pubmed:35091075" ;
+    sc:description "Analysis of m6A profile matrix based on graph regularized non-negative matrix factorization." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_2436,
+        edam:operation_3204 ;
+    sc:isAccessibleForFree true ;
+    sc:name "m6Adecom" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://www.rnanut.net/m6adecom" .
+
 <https://bio.tools/m6age> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3320,
@@ -279036,7 +288458,7 @@ N6-methyladenosine (m6A) is the most abundant posttranscriptional modification i
     sc:url "https://github.com/bokunoBike/m6AGE" .
 
 <https://bio.tools/m6ampred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_3047,
@@ -279049,7 +288471,7 @@ N6-methyladenosine (m6A) is the most abundant posttranscriptional modification i
     sc:url "https://www.xjtlu.edu.cn/biologicalsciences/m6am" .
 
 <https://bio.tools/m6anet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_3170,
@@ -279070,7 +288492,7 @@ N6-methyladenosine (m6A) is the most abundant posttranscriptional modification i
     sc:url "https://github.com/GoekeLab/m6anet" .
 
 <https://bio.tools/m6areader> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3295,
@@ -279090,7 +288512,7 @@ Among the various types of RNA modification, the methylation of adenosine at the
     sc:url "http://m6areader.rnamd.com" .
 
 <https://bio.tools/m7G-MaP-seq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_3170,
@@ -279105,7 +288527,7 @@ Among the various types of RNA modification, the methylation of adenosine at the
     sc:url "https://github.com/jeppevinther/m7g_map_seq" .
 
 <https://bio.tools/m7ghub> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0659,
@@ -279128,27 +288550,8 @@ A database for the disease-associated genetic variants that may affect m7G sites
     sc:name "m7GHub" ;
     sc:url "http://www.xjtlu.edu.cn/biologicalsciences/m7ghub" .
 
-<https://bio.tools/mCARE> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0749,
-        edam:topic_2269,
-        edam:topic_3411 ;
-    sc:citation <https://doi.org/10.1371/JOURNAL.PONE.0223004>,
-        "pmcid:PMC6773420",
-        "pubmed:31574133" ;
-    sc:description """Costs and cost-effectiveness analyses of mCARE strategies for promoting care seeking of maternal and newborn health services in rural Bangladesh.
-
-OBJECTIVE:We examined the incremental cost-effectiveness between two mHealth programs, implemented from 2011 to 2015 in rural Bangladesh: (1) Comprehensive mCARE package as an intervention group and (2) Basic mCARE package as a control group. METHODS:Both programs included a core package of census enumeration and pregnancy surveillance provided by an established cadre of digitally enabled community health workers (CHWs). In the comprehensive mCARE package, short message service (SMS) and home visit reminders were additionally sent to pregnant women (n = 610) and CHWs (n = 70) to promote the pregnant women's care-seeking of essential maternal and newborn care services.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'SMS' (bio.tools/sms)""" ;
-    sc:featureList edam:operation_3435,
-        edam:operation_3454 ;
-    sc:name "mCARE" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31574133" .
-
 <https://bio.tools/mCSM-PPI2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0199,
@@ -279172,7 +288575,7 @@ OBJECTIVE:We examined the incremental cost-effectiveness between two mHealth pro
         <https://orcid.org/0000-0003-2948-2413> .
 
 <https://bio.tools/mND> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2640,
@@ -279188,7 +288591,7 @@ OBJECTIVE:We examined the incremental cost-effectiveness between two mHealth pro
     sc:url "https://www.itb.cnr.it/mnd" .
 
 <https://bio.tools/mPies> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0121,
@@ -279212,14 +288615,14 @@ Werner, J., Géron, A., Kerssemakers, J. et al. mPies: a novel metaproteomics to
 
 <https://bio.tools/mQC> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1383" ;
-            sc:name "Sequence alignment (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1383" ] ;
+            sc:additionalType "http://edamontology.org/data_1383" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
+            sc:name "Sequence alignment (nucleic acid)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3308,
         edam:topic_3572 ;
@@ -279241,7 +288644,7 @@ Werner, J., Géron, A., Kerssemakers, J. et al. mPies: a novel metaproteomics to
     biotools:primaryContact <https://orcid.org/0000-0002-7575-2085> .
 
 <https://bio.tools/m_ia> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3071,
@@ -279257,7 +288660,7 @@ Werner, J., Géron, A., Kerssemakers, J. et al. mPies: a novel metaproteomics to
     sc:url "http://maia.genouest.org/" .
 
 <https://bio.tools/ma> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0203 ;
     sc:citation <https://doi.org/10.1007/s00335-015-9596-5> ;
@@ -279273,7 +288676,7 @@ Werner, J., Géron, A., Kerssemakers, J. et al. mPies: a novel metaproteomics to
     sc:url "http://www.emouseatlas.org/emap/home.html" .
 
 <https://bio.tools/ma2c> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0632,
         edam:topic_3518 ;
@@ -279290,7 +288693,7 @@ Werner, J., Géron, A., Kerssemakers, J. et al. mPies: a novel metaproteomics to
     sc:url "http://liulab.dfci.harvard.edu/MA2C/MA2C.htm" .
 
 <https://bio.tools/maanova> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -279309,7 +288712,7 @@ Werner, J., Géron, A., Kerssemakers, J. et al. mPies: a novel metaproteomics to
     biotools:primaryContact "Keith Sheppard" .
 
 <https://bio.tools/maaper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_3170,
@@ -279331,7 +288734,7 @@ Werner, J., Géron, A., Kerssemakers, J. et al. mPies: a novel metaproteomics to
     sc:url "https://github.com/Vivianstats/MAAPER" .
 
 <https://bio.tools/maawf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_0769,
@@ -279351,11 +288754,15 @@ A Multifunctional and Visual Tool for Microbiomic Data Analyses.""" ;
     sc:url "http://www.maawf.com" .
 
 <https://bio.tools/maboss> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2259,
         edam:topic_2269 ;
-    sc:citation "pubmed:22932419" ;
+    sc:citation <https://doi.org/10.1093/bioinformatics/btx123>,
+        <https://doi.org/10.1186/1752-0509-6-116>,
+        "pmcid:PMC3517402",
+        "pubmed:22932419",
+        "pubmed:28881959" ;
     sc:description "Simulating continuous/discrete time Markov processes, applied on a Boolean network." ;
     sc:featureList edam:operation_3562 ;
     sc:name "MaBoSS" ;
@@ -279364,16 +288771,36 @@ A Multifunctional and Visual Tool for Microbiomic Data Analyses.""" ;
     sc:softwareVersion "2.0" ;
     sc:url "https://maboss.curie.fr" .
 
+<https://bio.tools/maca> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_2229,
+        edam:topic_3170,
+        edam:topic_3308 ;
+    sc:citation <https://doi.org/10.1093/bioinformatics/btab840>,
+        "pubmed:34935911" ;
+    sc:description "Marker-based automatic cell-type annotation for single cell expression data" ;
+    sc:featureList edam:operation_0313,
+        edam:operation_2422,
+        edam:operation_3435 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "MACA" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/ImXman/MACA" .
+
 <https://bio.tools/macaron> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ] ;
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence variations" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Sequence variations" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3307,
@@ -279392,8 +288819,30 @@ A Multifunctional and Visual Tool for Microbiomic Data Analyses.""" ;
     sc:url "http://www.genmed.fr/index.php/fr/recherche/publications" ;
     biotools:primaryContact "Waqasuddin Khan" .
 
+<https://bio.tools/macarons> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_0625,
+        edam:topic_0780,
+        edam:topic_2885,
+        edam:topic_3517 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAB803>,
+        "pubmed:34864867" ;
+    sc:description "Macarons is an algorithm designed to recover single nucleotide polymorphisms (SNPs) that are related with a phenotype in genome wide association studies (GWAS) by taking into account of the dependencies between them." ;
+    sc:featureList edam:operation_3196,
+        edam:operation_3661,
+        edam:operation_3799 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "Macarons" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/serhan-yilmaz/macarons" .
+
 <https://bio.tools/macat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0077,
@@ -279415,7 +288864,7 @@ A Multifunctional and Visual Tool for Microbiomic Data Analyses.""" ;
     biotools:primaryContact <http://orcid.org/0000-0003-1471-1295> .
 
 <https://bio.tools/macclade> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_3293,
@@ -279429,8 +288878,54 @@ A Multifunctional and Visual Tool for Microbiomic Data Analyses.""" ;
     sc:url "http://macclade.org/index.html" ;
     biotools:primaryContact "David Maddison" .
 
+<https://bio.tools/mace> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0610,
+        edam:topic_0780,
+        edam:topic_3071,
+        edam:topic_3172,
+        edam:topic_3520 ;
+    sc:citation <https://doi.org/10.1007/S10886-022-01364-4>,
+        "pubmed:35576088" ;
+    sc:description "An Open Access Data Repository of Mass Spectra for Chemical Ecology." ;
+    sc:featureList edam:operation_3431,
+        edam:operation_3801,
+        edam:operation_3803,
+        edam:operation_3860 ;
+    sc:isAccessibleForFree true ;
+    sc:license "CC-BY-SA-4.0" ;
+    sc:name "MACE" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://www.oc.tu-bs.de/schulz/html/MACE.html" .
+
+<https://bio.tools/macer> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0196,
+        edam:topic_0621,
+        edam:topic_3572 ;
+    sc:citation <https://doi.org/10.3897/BDJ.9.E71378>,
+        "pmcid:PMC8443542",
+        "pubmed:34594153" ;
+    sc:description "Molecular Acquisition, Cleaning, and Evaluation in R (MACER) is an R package to assist biological researchers in assembling taxonomically and marker focused molecular sequence data set." ;
+    sc:featureList edam:operation_0310,
+        edam:operation_3192,
+        edam:operation_3200 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-2.0" ;
+    sc:name "MACER" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://cran.r-project.org/web/packages/MACER/MACER.pdf>,
+        <https://github.com/rgyoung6/MACER_example> ;
+    sc:url "https://github.com/rgyoung6/MACER" .
+
 <https://bio.tools/mach> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3055,
@@ -279451,7 +288946,7 @@ A Multifunctional and Visual Tool for Microbiomic Data Analyses.""" ;
     sc:url "http://csg.sph.umich.edu/abecasis/mach/" .
 
 <https://bio.tools/mach-admix> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3056 ;
     sc:citation <https://doi.org/10.1002/gepi.21690>,
@@ -279470,7 +288965,7 @@ A Multifunctional and Visual Tool for Microbiomic Data Analyses.""" ;
     sc:url "https://yunliweb.its.unc.edu//MaCH-Admix/index.php" .
 
 <https://bio.tools/mach2dat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_2885 ;
@@ -279485,7 +288980,7 @@ A Multifunctional and Visual Tool for Microbiomic Data Analyses.""" ;
     sc:url "https://www.nitrc.org/projects/mach2dat/" .
 
 <https://bio.tools/mach2qtl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3517 ;
     sc:citation <https://doi.org/10.1146/annurev.genom.9.081307.164242>,
@@ -279500,7 +288995,7 @@ A Multifunctional and Visual Tool for Microbiomic Data Analyses.""" ;
     sc:url "https://www.nitrc.org/projects/mach2qtl/" .
 
 <https://bio.tools/machado> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Suite",
         "Web API",
@@ -279517,7 +289012,7 @@ A Multifunctional and Visual Tool for Microbiomic Data Analyses.""" ;
     biotools:primaryContact <https://orcid.org/0000-0002-7739-0284> .
 
 <https://bio.tools/machine-learned_ses> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0166,
         edam:topic_3474,
@@ -279537,7 +289032,7 @@ A Multifunctional and Visual Tool for Microbiomic Data Analyses.""" ;
     sc:url "http://rayluolab.org/ml-ses/" .
 
 <https://bio.tools/machine-olf-action> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2258,
         edam:topic_3292,
@@ -279556,7 +289051,7 @@ Machine-OLF-action: a machine learning-driven computational framework.""" ;
     sc:url "https://ahuja-lab.in/" .
 
 <https://bio.tools/machine_boss> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0160,
@@ -279576,7 +289071,7 @@ Machine Boss allows you to manipulate state machines by concatenating, composing
     sc:url "http://machineboss.org/" .
 
 <https://bio.tools/macie> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0821,
@@ -279598,7 +289093,7 @@ Machine Boss allows you to manipulate state machines by concatenating, composing
     biotools:primaryContact "Gemma L. Holliday" .
 
 <https://bio.tools/macleaps> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3053,
@@ -279615,7 +289110,7 @@ Machine Boss allows you to manipulate state machines by concatenating, composing
     sc:url "http://www.ra.cs.uni-tuebingen.de/software/MACLEAPS/index.htm" .
 
 <https://bio.tools/macml> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1371/journal.pcbi.1000421> ;
@@ -279629,7 +289124,7 @@ Machine Boss allows you to manipulate state machines by concatenating, composing
     sc:url "http://medicine.yale.edu/lab/townsend/sand/index.aspx#page1" .
 
 <https://bio.tools/macoed> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3053 ;
@@ -279643,7 +289138,7 @@ Machine Boss allows you to manipulate state machines by concatenating, composing
     sc:url "http://www.csbio.sjtu.edu.cn/bioinf/MACOED/" .
 
 <https://bio.tools/macorrplot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0204,
@@ -279663,7 +289158,7 @@ Machine Boss allows you to manipulate state machines by concatenating, composing
     biotools:primaryContact "Alexander Ploner" .
 
 <https://bio.tools/macpepdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -279684,7 +289179,7 @@ Machine Boss allows you to manipulate state machines by concatenating, composing
     sc:url "https://macpepdb.mpc.rub.de/" .
 
 <https://bio.tools/macpet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3125 ;
@@ -279705,7 +289200,7 @@ Machine Boss allows you to manipulate state machines by concatenating, composing
     biotools:primaryContact "Ioannis Vardaxis" .
 
 <https://bio.tools/macrel> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library",
         "Web application" ;
@@ -279730,7 +289225,7 @@ Pipeline to mine antimicrobial peptides (AMPs) from (meta)genomes.""" ;
     sc:url "https://big-data-biology.org/software/macrel" .
 
 <https://bio.tools/macroms> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0821,
         edam:topic_3343,
@@ -279749,7 +289244,7 @@ Pipeline to mine antimicrobial peptides (AMPs) from (meta)genomes.""" ;
     biotools:primaryContact <https://orcid.org/0000-0003-3107-9922> .
 
 <https://bio.tools/macroscopic-muscle-model> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3306 ;
     sc:citation <https://doi.org/10.1016/j.jbiomech.2014.02.009> ;
@@ -279765,7 +289260,7 @@ Pipeline to mine antimicrobial peptides (AMPs) from (meta)genomes.""" ;
     biotools:primaryContact <https://orcid.org/0000-0002-3480-6892> .
 
 <https://bio.tools/macrosight> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_2229,
@@ -279788,26 +289283,26 @@ Pipeline to mine antimicrobial peptides (AMPs) from (meta)genomes.""" ;
 
 <https://bio.tools/macs> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ],
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_3005" ;
+            sc:name "Annotation track" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0749,
@@ -279826,7 +289321,7 @@ Pipeline to mine antimicrobial peptides (AMPs) from (meta)genomes.""" ;
     biotools:primaryContact "MACS Support" .
 
 <https://bio.tools/macs_dna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3678 ;
@@ -279840,7 +289335,7 @@ Pipeline to mine antimicrobial peptides (AMPs) from (meta)genomes.""" ;
     sc:url "https://popmodels.cancercontrol.cancer.gov/gsr/packages/macs/" .
 
 <https://bio.tools/macse> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0108,
@@ -279866,18 +289361,16 @@ MACSE aligns coding NT sequences with respect to their AA translation while allo
 
 <https://bio.tools/macsims> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1947" ;
+            sc:name "Sequence alignment" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ],
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:name "Annotation track" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0092 ;
     sc:citation <https://doi.org/10.1186/1471-2105-7-318> ;
@@ -279895,7 +289388,7 @@ MACSE aligns coding NT sequences with respect to their AA translation while allo
     biotools:primaryContact "Julie Thompson" .
 
 <https://bio.tools/macsnvdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0208,
         edam:topic_0602,
@@ -279918,46 +289411,38 @@ MACSNVdb is an open-access SNV database comprising ~74.51 million high-quality n
 
 <https://bio.tools/macsyfinder> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0869" ;
-            sc:name "Sequence-profile alignment" ;
-            sc:sameAs "http://edamontology.org/data_0869" ],
+            sc:additionalType "http://edamontology.org/data_2886" ;
+            sc:encodingFormat "http://edamontology.org/format_2200" ;
+            sc:name "Protein sequence record" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ],
+            sc:additionalType "http://edamontology.org/data_0869" ;
+            sc:encodingFormat "http://edamontology.org/format_3329" ;
+            sc:name "Sequence-profile alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2337" ;
-            sc:name "Resource metadata" ;
-            sc:sameAs "http://edamontology.org/data_2337" ],
-        [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2886" ;
-            sc:name "Protein sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2886" ] ;
+            sc:additionalType "http://edamontology.org/data_2337" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Resource metadata" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ],
-        [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ],
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ],
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0085 ;
     sc:author "Bertrand Néron" ;
     sc:citation <https://doi.org/10.1371/journal.pone.0110726> ;
     sc:description "Program to model and detect macromolecular systems, genetic pathways... in protein datasets. In prokaryotes, these systems have often evolutionarily conserved properties: they are made of conserved components, and are encoded in compact loci (conserved genetic architecture). The user models these systems to reflect these conserved features, and to allow their efficient detection." ;
-    sc:featureList edam:operation_0337,
-        edam:operation_2423 ;
+    sc:featureList edam:operation_1777,
+        edam:operation_3672 ;
     sc:license "GPL-3.0" ;
     sc:name "MacSyFinder" ;
     sc:operatingSystem "Linux",
@@ -279965,13 +289450,17 @@ MACSNVdb is an open-access SNV database comprising ~74.51 million high-quality n
     sc:provider "Institut Pasteur",
         "Microbial Evolutionary Genomics Unit" ;
     sc:softwareHelp <http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0110726>,
-        <https://github.com/gem-pasteur/macsyfinder> ;
-    sc:softwareVersion "1.0.2" ;
+        <https://macsyfinder.readthedocs.io/en/latest/>,
+        <https://macsyfinder.readthedocs.io/en/latest/developer_guide/index.html>,
+        <https://macsyfinder.readthedocs.io/en/latest/user_guide/index.html> ;
+    sc:softwareVersion "1.0.2",
+        "2.0" ;
     sc:url "https://github.com/gem-pasteur/macsyfinder" ;
-    biotools:primaryContact "Bertrand Néron" .
+    biotools:primaryContact <https://orcid.org/0000-0002-5231-3346>,
+        "Bertrand Néron" .
 
 <https://bio.tools/mad> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2885,
         edam:topic_3168,
@@ -279987,7 +289476,7 @@ MACSNVdb is an open-access SNV database comprising ~74.51 million high-quality n
     sc:url "https://github.com/isglobal-brge/MAD" .
 
 <https://bio.tools/mad-hidtree> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2885,
@@ -280008,7 +289497,7 @@ A Tool for Multiple Accessions' Distinguishing through Hierarchical Decision Tre
     sc:url "https://bioinfo.noble.org/MAD-HiDTree/" .
 
 <https://bio.tools/mad-unet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3452,
         edam:topic_3474,
@@ -280025,7 +289514,7 @@ Deep Learning Tutorial for Kaggle Ultrasound Nerve Segmentation competition, usi
     sc:url "https://github.com/Mrqins/pancreas-segmentation" .
 
 <https://bio.tools/mada> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0654,
@@ -280046,7 +289535,7 @@ MADA is developed for the whole process of methylation array data analysis""" ;
     sc:url "http://bioinformatics.csu.edu.cn/MADA/" .
 
 <https://bio.tools/madap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0203,
@@ -280067,7 +289556,7 @@ MADA is developed for the whole process of methylation array data analysis""" ;
     biotools:primaryContact "Contact form" .
 
 <https://bio.tools/madcat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0736,
@@ -280083,7 +289572,7 @@ MADA is developed for the whole process of methylation array data analysis""" ;
     sc:url "http://www.grigoryanlab.org/madcat/" .
 
 <https://bio.tools/made> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0769,
@@ -280099,7 +289588,7 @@ The Maryland Analysis of Developmental EEG (MADE) Pipeline. Version 1.0. Develop
     sc:url "https://github.com/ChildDevLab/MADE-EEG-preprocessing-pipeline" .
 
 <https://bio.tools/made4> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -280121,7 +289610,7 @@ The Maryland Analysis of Developmental EEG (MADE) Pipeline. Version 1.0. Develop
     biotools:primaryContact <http://orcid.org/0000-0002-1395-9734> .
 
 <https://bio.tools/madgic> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_2269,
@@ -280139,7 +289628,7 @@ The Maryland Analysis of Developmental EEG (MADE) Pipeline. Version 1.0. Develop
     biotools:primaryContact "Keegan Korthauer" .
 
 <https://bio.tools/madnet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3473,
@@ -280156,10 +289645,10 @@ The Maryland Analysis of Developmental EEG (MADE) Pipeline. Version 1.0. Develop
 
 <https://bio.tools/madora> a sc:SoftwareApplication ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0920" ;
-            sc:name "Genotype/phenotype report" ;
-            sc:sameAs "http://edamontology.org/data_0920" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0920" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Genotype/phenotype report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3303,
@@ -280183,7 +289672,7 @@ The Maryland Analysis of Developmental EEG (MADE) Pipeline. Version 1.0. Develop
     biotools:primaryContact "Daniel Georgiev" .
 
 <https://bio.tools/madseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0097,
@@ -280203,7 +289692,7 @@ The Maryland Analysis of Developmental EEG (MADE) Pipeline. Version 1.0. Develop
     biotools:primaryContact "Yu Kong" .
 
 <https://bio.tools/maelasviewer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0749,
@@ -280225,7 +289714,7 @@ A magnetostrictive material is one which changes in size due to a change of stat
     sc:url "https://maelasviewer.herokuapp.com/" .
 
 <https://bio.tools/maestro> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2533,
         edam:topic_2814,
@@ -280241,7 +289730,7 @@ A magnetostrictive material is one which changes in size due to a change of stat
     sc:url "https://biwww.che.sbg.ac.at/" .
 
 <https://bio.tools/maestro_standalone> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:citation <https://doi.org/10.1186/s12859-015-0548-6>,
         "pubmed:25885774" ;
@@ -280254,7 +289743,7 @@ A magnetostrictive material is one which changes in size due to a change of stat
     sc:url "https://pbwww.services.came.sbg.ac.at/maestro" .
 
 <https://bio.tools/maestroweb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_3307 ;
     sc:description "MAESTRO-web is web interface to MAESTRO, a Multi AgEnt STability pRedictiOn tool for calculating changes in unfolding free energy upon point mutation. MAESTRO is structure based, which means that the 3-d structure of the wild type is required. It is able to predict single- and multi-point in monomeric and multimeric proteins. In addition, MAESTROweb provides mutation sensitivity profiles, a scanner for the most (de)stabilizing mutations and potential S-S bonds sites." ;
@@ -280262,7 +289751,7 @@ A magnetostrictive material is one which changes in size due to a change of stat
     sc:url "https://pbwww.services.came.sbg.ac.at/maestro/web" .
 
 <https://bio.tools/maexplorer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_2269,
@@ -280282,7 +289771,7 @@ A magnetostrictive material is one which changes in size due to a change of stat
     sc:url "http://maexplorer.sourceforge.net/" .
 
 <https://bio.tools/maf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3518 ;
@@ -280298,7 +289787,7 @@ A magnetostrictive material is one which changes in size due to a change of stat
     biotools:primaryContact "P.Hingamp" .
 
 <https://bio.tools/mafco> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_3071 ;
@@ -280313,14 +289802,14 @@ A magnetostrictive material is one which changes in size due to a change of stat
 
 <https://bio.tools/mafft_ebi> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -280337,7 +289826,7 @@ A magnetostrictive material is one which changes in size due to a change of stat
     sc:url "https://www.ebi.ac.uk/Tools/msa/mafft/" .
 
 <https://bio.tools/mafsnp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2885,
         edam:topic_3053,
@@ -280354,7 +289843,7 @@ A magnetostrictive material is one which changes in size due to a change of stat
     biotools:primaryContact "Jiyuan Hu and Hong Zhang" .
 
 <https://bio.tools/maftools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0199,
@@ -280372,7 +289861,7 @@ A magnetostrictive material is one which changes in size due to a change of stat
     biotools:primaryContact "Anand Mayakonda" .
 
 <https://bio.tools/maga> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0160,
@@ -280395,7 +289884,7 @@ MAGA is a new simpler way to infer information from alignments. Based on a regul
     sc:url "http://cbdm-01.zdv.uni-mainz.de/~munoz/maga/" .
 
 <https://bio.tools/magallanes> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0091,
@@ -280422,8 +289911,32 @@ MAGA is a new simpler way to infer information from alignments. Based on a regul
     sc:url "http://bitlab-es.com/magallanes/" ;
     biotools:primaryContact "Esteban Pérez-Wohlfeil" .
 
+<https://bio.tools/mage> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0625,
+        edam:topic_0632,
+        edam:topic_3063,
+        edam:topic_3518 ;
+    sc:citation <https://doi.org/10.3390/BIOLOGY11060895>,
+        "pmcid:PMC9220151",
+        "pubmed:35741417" ;
+    sc:description "An Open-Source Tool for Meta-Analysis of Gene Expression Studies." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_0315,
+        edam:operation_2436 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "MAGE" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://www.compgen.org/tools/mage" .
+
 <https://bio.tools/mage-ml_visualize> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3368 ;
     sc:description "MAGE-ML visualize script will read any MAGE-ML file and generate a graph showing the links between BioMaterials all the way through to BioAssays, and include information on sample characteristics and experimental factor values in the output." ;
@@ -280436,7 +289949,7 @@ MAGA is a new simpler way to infer information from alignments. Based on a regul
     sc:url "http://tab2mage.sourceforge.net/#other_packages" .
 
 <https://bio.tools/mageck> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0622,
@@ -280452,7 +289965,7 @@ MAGA is a new simpler way to infer information from alignments. Based on a regul
     biotools:primaryContact "Dana Farber" .
 
 <https://bio.tools/mageckflute> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0085 ;
     sc:description "It is designed to surporting downstream analysis, utilizing the gene summary data provided through MAGeCK or MAGeCK-VISPR. Quality control, normalization, and screen hit identification for CRISPR screen data are performed in pipeline. Identified hits within the pipeline are categorized based on experimental design, and are subsequently interpreted by functional enrichment analysis." ;
@@ -280473,7 +289986,7 @@ MAGA is a new simpler way to infer information from alignments. Based on a regul
     biotools:primaryContact "Wubing Zhang" .
 
 <https://bio.tools/magecomet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3365,
         edam:topic_3473 ;
@@ -280492,7 +290005,7 @@ MAGA is a new simpler way to infer information from alignments. Based on a regul
     biotools:primaryContact "Helen Parkinson" .
 
 <https://bio.tools/magellan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3056 ;
@@ -280513,18 +290026,18 @@ MAGA is a new simpler way to infer information from alignments. Based on a regul
 
 <https://bio.tools/mageri> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2337" ;
-            sc:name "Resource metadata" ;
-            sc:sameAs "http://edamontology.org/data_2337" ],
+            sc:additionalType "http://edamontology.org/data_2337" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Resource metadata" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0848" ;
-            sc:name "Raw sequence" ;
-            sc:sameAs "http://edamontology.org/data_0848" ] ;
+            sc:additionalType "http://edamontology.org/data_0848" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Raw sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2955" ;
-            sc:name "Sequence report" ;
-            sc:sameAs "http://edamontology.org/data_2955" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2955" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0199,
@@ -280543,7 +290056,7 @@ MAGA is a new simpler way to infer information from alignments. Based on a regul
     biotools:primaryContact "Dmitriy M. Chudakov" .
 
 <https://bio.tools/maggie> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0625,
@@ -280562,7 +290075,7 @@ MAGGIE provides a framework for identifying DNA sequence motifs mediating transc
     sc:url "https://github.com/zeyang-shen/maggie" .
 
 <https://bio.tools/maggottracker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_3070 ;
@@ -280577,7 +290090,7 @@ MAGGIE provides a framework for identifying DNA sequence motifs mediating transc
     sc:url "http://wormloco.org/mag/doc/" .
 
 <https://bio.tools/magi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_2640,
@@ -280594,7 +290107,7 @@ MAGGIE provides a framework for identifying DNA sequence motifs mediating transc
     biotools:primaryContact "Raphael Lab, Princeton University" .
 
 <https://bio.tools/magi-ms> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0203,
@@ -280615,7 +290128,7 @@ MAGGIE provides a framework for identifying DNA sequence motifs mediating transc
     sc:url "https://github.com/jchow32/MAGI-MS" .
 
 <https://bio.tools/magia2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -280639,18 +290152,15 @@ MAGGIE provides a framework for identifying DNA sequence motifs mediating transc
 
 <https://bio.tools/magic> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2295" ;
-            sc:name "Gene ID" ;
-            sc:sameAs "http://edamontology.org/data_2295" ] ;
+            sc:additionalType "http://edamontology.org/data_2295" ;
+            sc:name "Gene ID" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1636" ;
-            sc:name "Heat map" ;
-            sc:sameAs "http://edamontology.org/data_1636" ],
+            sc:additionalType "http://edamontology.org/data_3134" ;
+            sc:name "Gene transcript report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3134" ;
-            sc:name "Gene transcript report" ;
-            sc:sameAs "http://edamontology.org/data_3134" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1636" ;
+            sc:name "Heat map" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0780,
         edam:topic_3308 ;
@@ -280667,7 +290177,7 @@ MAGGIE provides a framework for identifying DNA sequence motifs mediating transc
     sc:url "http://bioinformatics.intec.ugent.be/magic/" .
 
 <https://bio.tools/magic-clustering> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3337,
@@ -280685,7 +290195,7 @@ MAGGIE provides a framework for identifying DNA sequence motifs mediating transc
         "Junhao Wen" .
 
 <https://bio.tools/magic_encode> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3169,
@@ -280705,7 +290215,7 @@ The manuscript accompanying this script is: MAGIC: A tool for predicting transcr
     sc:url "https://go.wisc.edu/magic" .
 
 <https://bio.tools/magic_ms> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_1317,
@@ -280722,7 +290232,7 @@ The manuscript accompanying this script is: MAGIC: A tool for predicting transcr
     biotools:primaryContact "T.-Y. Sung" .
 
 <https://bio.tools/magic_rings> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0209,
@@ -280743,7 +290253,7 @@ The manuscript accompanying this script is: MAGIC: A tool for predicting transcr
     sc:url "https://bit.ly/magicrings" .
 
 <https://bio.tools/magic_tool> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3382 ;
     sc:description "MAGIC Tool is an integrated microarray data analysis software." ;
@@ -280758,7 +290268,7 @@ The manuscript accompanying this script is: MAGIC: A tool for predicting transcr
     sc:url "http://www.bio.davidson.edu/projects/magic/magic.html" .
 
 <https://bio.tools/magicviewer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0199,
@@ -280780,7 +290290,7 @@ The manuscript accompanying this script is: MAGIC: A tool for predicting transcr
         "Zhongsheng Sun" .
 
 <https://bio.tools/magiic-pro> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -280798,7 +290308,7 @@ The manuscript accompanying this script is: MAGIC: A tool for predicting transcr
     biotools:primaryContact "Chien-Yu Chen" .
 
 <https://bio.tools/magine> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0602,
@@ -280820,7 +290330,7 @@ MAGINE is a framework for the analysis of quantitative multi-omics data. It was
     sc:url "https://github.com/lolab-vu/magine" .
 
 <https://bio.tools/magma> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3518 ;
@@ -280834,7 +290344,7 @@ MAGINE is a framework for the analysis of quantitative multi-omics data. It was
     sc:url "http://www.magma-fgcz.unizh.ch/pages/loginuser.jsf" .
 
 <https://bio.tools/magma_motif> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0203,
@@ -280851,7 +290361,7 @@ MAGINE is a framework for the analysis of quantitative multi-omics data. It was
     biotools:primaryContact "Gary D. Stormo" .
 
 <https://bio.tools/magna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3299 ;
@@ -280867,7 +290377,7 @@ MAGINE is a framework for the analysis of quantitative multi-omics data. It was
     biotools:primaryContact "Tijana Milenkovic, Ph.D" .
 
 <https://bio.tools/magnet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0203,
@@ -280890,7 +290400,7 @@ MAGINE is a framework for the analysis of quantitative multi-omics data. It was
     biotools:primaryContact "Gürkan Bebek" .
 
 <https://bio.tools/magnetic-susceptibility-measurement> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -280905,30 +290415,31 @@ MAGINE is a framework for the analysis of quantitative multi-omics data. It was
     sc:url "https://www.mathworks.com/matlabcentral/fileexchange/70296-the-codes-for-measuring-magnetic-susceptibility" ;
     biotools:primaryContact "Seon ha Hwang" .
 
-<https://bio.tools/magnetoencephalography_EEG> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_2269,
-        edam:topic_3452,
-        edam:topic_3474 ;
-    sc:citation <https://doi.org/10.1007/S12021-019-09436-9>,
-        "pubmed:31598847" ;
-    sc:description """a GPU Accelerated FEM Tool for Forward and Inverse Computations in Matlab.
-
-Open-source Python software for exploring, visualizing, and analyzing human neurophysiological data: MEG, EEG, sEEG, ECoG, and more.
-
-Clean scripting & visualization.
-
-Broad data format & analysis support.
-
-||| COMMON LINK WITH (PUB. & NAME DIFFERENT) bio.tools/MNE-Python (MARTINOS.ORG/mne/stable).
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'Zeffiro User Interface Electromagnetic Brain Imaging', 'Zeffiro', 'FEM' (bio.tools/fem), 'EEG'""" ;
-    sc:featureList edam:operation_0337,
-        edam:operation_3435 ;
-    sc:name "magnetoencephalography EEG" ;
-    sc:url "https://martinos.org/mne/stable/index.html" .
+<https://bio.tools/magneto> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0196,
+        edam:topic_0769,
+        edam:topic_3050,
+        edam:topic_3174,
+        edam:topic_3697 ;
+    sc:citation <https://doi.org/10.1128/msystems.00432-22>,
+        "pubmed:35703559" ;
+    sc:description "An automated workflow for genome-resolved metagenomics" ;
+    sc:featureList edam:operation_0310,
+        edam:operation_0362,
+        edam:operation_3192,
+        edam:operation_3219 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "MAGNETO" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://gitlab.univ-nantes.fr/bird_pipeline_registry/magneto" .
 
 <https://bio.tools/magnolia> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0082,
@@ -280951,10 +290462,9 @@ Broad data format & analysis support.
 
 <https://bio.tools/magpie> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0950" ;
-            sc:name "Mathematical model" ;
-            sc:sameAs "http://edamontology.org/data_0950" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0950" ;
+            sc:name "Mathematical model" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_2269,
@@ -280974,7 +290484,7 @@ Broad data format & analysis support.
     biotools:primaryContact "Christoph Baldow" .
 
 <https://bio.tools/magprediction> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_2885,
         edam:topic_3053 ;
@@ -280988,7 +290498,7 @@ Broad data format & analysis support.
     sc:url "http://qge.fhcrc.org/MAGprediction/" .
 
 <https://bio.tools/magpy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0637,
@@ -281004,7 +290514,7 @@ Broad data format & analysis support.
     biotools:primaryContact <https://orcid.org/0000-0003-4211-0358> .
 
 <https://bio.tools/magus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0091 ;
@@ -281022,7 +290532,7 @@ MAFFT (linux version is included).""" ;
     sc:url "https://github.com/vlasmirnov/MAGUS" .
 
 <https://bio.tools/maigespack> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0654,
@@ -281042,7 +290552,7 @@ MAFFT (linux version is included).""" ;
     biotools:primaryContact "Gustavo H. Esteves" .
 
 <https://bio.tools/mainmast> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0611,
@@ -281062,7 +290572,7 @@ MAINMAST is a fully automated protocol and can generate reliable initial C-alpha
     sc:url "http://kiharalab.org/mainmast/index.html" .
 
 <https://bio.tools/mainmastseg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0736,
@@ -281080,7 +290590,7 @@ MAINMAST is a fully automated protocol and can generate reliable initial C-alpha
     sc:url "http://kiharalab.org/mainmast_seg" .
 
 <https://bio.tools/mainsel> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3063,
@@ -281097,7 +290607,7 @@ This repository is a fork of the official Mainzelliste project, embodying the fe
     sc:url "https://github.com/medicalinformatics/MainzellisteSEL" .
 
 <https://bio.tools/mainzelhandler> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3063,
         edam:topic_3303,
@@ -281110,7 +290620,7 @@ This repository is a fork of the official Mainzelliste project, embodying the fe
     sc:url "https://github.com/DanielPreciado-Marquez/MainzelHandler" .
 
 <https://bio.tools/maip> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0209,
@@ -281131,7 +290641,7 @@ The malaria inhibitor prediction (MAIP) platform is the result of a public-priva
     sc:url "https://www.ebi.ac.uk/chembl/maip/" .
 
 <https://bio.tools/maisen> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0196,
@@ -281151,14 +290661,12 @@ The malaria inhibitor prediction (MAIP) platform is the result of a public-priva
 
 <https://bio.tools/maistas> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ] ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:name "Nucleic acid sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:name "Protein structure" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btr198> ;
@@ -281176,22 +290684,22 @@ The malaria inhibitor prediction (MAIP) platform is the result of a public-priva
 
 <https://bio.tools/mait> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ] ;
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:encodingFormat "http://edamontology.org/format_3650" ;
+            sc:name "Mass spectrometry data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ],
+            sc:additionalType "http://edamontology.org/data_1636" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Heat map" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ],
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Plot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1636" ;
-            sc:name "Heat map" ;
-            sc:sameAs "http://edamontology.org/data_1636" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3172,
@@ -281214,14 +290722,13 @@ The malaria inhibitor prediction (MAIP) platform is the result of a public-priva
 
 <https://bio.tools/maizegdb> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2798" ;
-            sc:name "MaizeDB ID" ;
-            sc:sameAs "http://edamontology.org/data_2798" ] ;
+            sc:additionalType "http://edamontology.org/data_2798" ;
+            sc:name "MaizeDB ID" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3134" ;
-            sc:name "Gene transcript report" ;
-            sc:sameAs "http://edamontology.org/data_3134" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3134" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Gene transcript report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0780 ;
     sc:citation <https://doi.org/10.1093/database/bap020> ;
@@ -281235,7 +290742,7 @@ The malaria inhibitor prediction (MAIP) platform is the result of a public-priva
     sc:url "http://www.maizegdb.org/" .
 
 <https://bio.tools/mak> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_0798 ;
@@ -281248,7 +290755,7 @@ The malaria inhibitor prediction (MAIP) platform is the result of a public-priva
     sc:url "http://perl.idmb.tamu.edu/mak.htm" .
 
 <https://bio.tools/make2d-db_ii> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -281265,14 +290772,14 @@ The malaria inhibitor prediction (MAIP) platform is the result of a public-priva
 
 <https://bio.tools/make_random> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_2546" ;
+            sc:name "Protein sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_2546" ;
+            sc:name "Protein sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_2269,
@@ -281286,7 +290793,7 @@ The malaria inhibitor prediction (MAIP) platform is the result of a public-priva
     sc:url "http://www.ms-utils.org/make_random.html" .
 
 <https://bio.tools/makecdfenv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -281306,7 +290813,7 @@ The malaria inhibitor prediction (MAIP) platform is the result of a public-priva
     biotools:primaryContact "James W. MacDonald" .
 
 <https://bio.tools/makehub> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0622,
@@ -281327,14 +290834,12 @@ MakeHub is a command line tool for the fully automatic generation of of track da
 
 <https://bio.tools/makenucseq> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1597" ;
-            sc:name "Codon usage table" ;
-            sc:sameAs "http://edamontology.org/data_1597" ] ;
+            sc:additionalType "http://edamontology.org/data_1597" ;
+            sc:name "Codon usage table" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -281365,14 +290870,12 @@ MakeHub is a command line tool for the fully automatic generation of of track da
 
 <https://bio.tools/makeprotseq> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0897" ;
-            sc:name "Protein property" ;
-            sc:sameAs "http://edamontology.org/data_0897" ] ;
+            sc:additionalType "http://edamontology.org/data_0897" ;
+            sc:name "Protein property" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2886" ;
-            sc:name "Protein sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2886" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2886" ;
+            sc:name "Protein sequence record" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -281402,14 +290905,17 @@ MakeHub is a command line tool for the fully automatic generation of of track da
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/makeprotseq.html" .
 
 <https://bio.tools/maker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0622,
         edam:topic_0654 ;
     sc:citation <https://doi.org/10.1101/gr.6743907>,
+        <https://doi.org/10.1186/1471-2105-12-491>,
         "pmcid:PMC2134774",
-        "pubmed:18025269" ;
+        "pmcid:PMC3280279",
+        "pubmed:18025269",
+        "pubmed:22192575" ;
     sc:description "Portable and easily configurable genome annotation pipeline. It’s purpose is to allow smaller eukaryotic and prokaryotic genome projects to independently annotate their genomes and to create genome databases." ;
     sc:featureList edam:operation_0362 ;
     sc:license "Artistic-2.0" ;
@@ -281419,7 +290925,7 @@ MakeHub is a command line tool for the fully automatic generation of of track da
     sc:url "http://www.yandell-lab.org/software/maker.html" .
 
 <https://bio.tools/maker-p> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0219,
         edam:topic_3168 ;
@@ -281433,22 +290939,22 @@ MakeHub is a command line tool for the fully automatic generation of of track da
 
 <https://bio.tools/makestatschipseq> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ],
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Image" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3169 ;
     sc:citation <https://doi.org/10.1093/nar/gkw343>,
@@ -281465,30 +290971,30 @@ MakeHub is a command line tool for the fully automatic generation of of track da
 
 <https://bio.tools/maketssdist> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_3003" ;
+            sc:name "Annotation track" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ] ;
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_3003" ;
+            sc:name "Annotation track" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3508" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Image" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3169 ;
     sc:citation <https://doi.org/10.1093/nar/gkw343>,
@@ -281504,7 +291010,7 @@ MakeHub is a command line tool for the fully automatic generation of of track da
     biotools:primaryContact "Galaxy Support Team" .
 
 <https://bio.tools/makips> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3335,
@@ -281526,7 +291032,7 @@ MAKIPS ACUTE KIDNEY INJURY RISK CALCULATOR.""" ;
     sc:url "http://www.bioestadistica.net/MAKIPS.aspx" .
 
 <https://bio.tools/mako> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3168,
@@ -281543,7 +291049,7 @@ MAKIPS ACUTE KIDNEY INJURY RISK CALCULATOR.""" ;
     biotools:primaryContact <https://orcid.org/0000-0002-8116-5901> .
 
 <https://bio.tools/mal-prec> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0601,
@@ -281563,7 +291069,7 @@ Mal-Prec is a supervised machine learning classification to predict malonylated
     sc:url "https://github.com/flyinsky6/Mal-Prec" .
 
 <https://bio.tools/mala> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0602 ;
     sc:citation <https://doi.org/10.1109/DEXA.2012.29> ;
@@ -281577,7 +291083,7 @@ Mal-Prec is a supervised machine learning classification to predict malonylated
     sc:url "http://dmb.iasi.cnr.it/mala.php" .
 
 <https://bio.tools/malacoda> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0749,
@@ -281597,7 +291103,7 @@ The goal of malacoda is to enable Bayesian analysis of high-throughput genomic a
     sc:url "http://github.com/andrewGhazi/malacoda" .
 
 <https://bio.tools/malakite> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_3510 ;
@@ -281614,14 +291120,13 @@ The goal of malacoda is to enable Bayesian analysis of high-throughput genomic a
 
 <https://bio.tools/malaria_data_blast_search> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0857" ;
-            sc:name "Sequence search results" ;
-            sc:sameAs "http://edamontology.org/data_0857" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0857" ;
+            sc:name "Sequence search results" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0621,
@@ -281643,14 +291148,12 @@ The goal of malacoda is to enable Bayesian analysis of high-throughput genomic a
 
 <https://bio.tools/malaria_data_small_molecule_search> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3490" ;
-            sc:name "Chemical structure sketch" ;
-            sc:sameAs "http://edamontology.org/data_3490" ] ;
+            sc:additionalType "http://edamontology.org/data_3490" ;
+            sc:name "Chemical structure sketch" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0962" ;
-            sc:name "Small molecule report" ;
-            sc:sameAs "http://edamontology.org/data_0962" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0962" ;
+            sc:name "Small molecule report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0621,
@@ -281671,7 +291174,7 @@ The goal of malacoda is to enable Bayesian analysis of high-throughput genomic a
     biotools:primaryContact "Mark Davies" .
 
 <https://bio.tools/malax> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3173,
@@ -281689,7 +291192,7 @@ The goal of malacoda is to enable Bayesian analysis of high-throughput genomic a
         "Omer Weissbrod" .
 
 <https://bio.tools/malboost> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0749,
@@ -281713,7 +291216,7 @@ The goal of malacoda is to enable Bayesian analysis of high-throughput genomic a
     sc:url "http://malboost.bi.up.ac.za" .
 
 <https://bio.tools/maldi_quant> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -281735,7 +291238,7 @@ The goal of malacoda is to enable Bayesian analysis of high-throughput genomic a
     biotools:primaryContact <https://orcid.org/0000-0001-7406-4443> .
 
 <https://bio.tools/maldipepquant> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3520 ;
     sc:citation <https://doi.org/10.1128/AEM.00667-07>,
@@ -281752,7 +291255,7 @@ The goal of malacoda is to enable Bayesian analysis of high-throughput genomic a
     biotools:primaryContact "ExPASy helpdesk" .
 
 <https://bio.tools/maldsoft> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_3056 ;
@@ -281770,7 +291273,7 @@ The goal of malacoda is to enable Bayesian analysis of high-throughput genomic a
     sc:url "https://web.stanford.edu/group/pritchardlab/software/maldsoft_download.html" .
 
 <https://bio.tools/maligner> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0080 ;
@@ -281784,7 +291287,7 @@ The goal of malacoda is to enable Bayesian analysis of high-throughput genomic a
     sc:url "https://github.com/LeeMendelowitz/maligner" .
 
 <https://bio.tools/mallard> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_3511 ;
@@ -281799,7 +291302,7 @@ The goal of malacoda is to enable Bayesian analysis of high-throughput genomic a
     sc:url "http://www.softsea.com/review/Mallard.html" .
 
 <https://bio.tools/malta> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0196,
@@ -281817,7 +291320,7 @@ The goal of malacoda is to enable Bayesian analysis of high-throughput genomic a
     sc:url "http://alan.cs.gsu.edu/NGS/?q=malta" .
 
 <https://bio.tools/maltcms> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0121,
@@ -281836,22 +291339,22 @@ The goal of malacoda is to enable Bayesian analysis of high-throughput genomic a
 
 <https://bio.tools/malvirus> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3494" ;
-            sc:name "DNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3494" ],
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "DNA sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ],
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "DNA sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3494" ;
-            sc:name "DNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3494" ] ;
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_2305" ;
+            sc:name "Annotation track" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence variations" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0781,
@@ -281878,7 +291381,7 @@ MALVIRUS is distributed as a Docker image and is publicly available on GitHub an
     sc:url "https://algolab.github.io/MALVIRUS" .
 
 <https://bio.tools/mam> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0084,
@@ -281896,14 +291399,13 @@ MALVIRUS is distributed as a Docker image and is publicly available on GitHub an
 
 <https://bio.tools/mam-pipeline> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3497" ;
-            sc:name "DNA sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_3497" ] ;
+            sc:additionalType "http://edamontology.org/data_3497" ;
+            sc:name "DNA sequence (raw)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1893" ;
-            sc:name "Locus ID" ;
-            sc:sameAs "http://edamontology.org/data_1893" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1893" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Locus ID" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1093/nar/gku847> ;
@@ -281919,7 +291421,7 @@ MALVIRUS is distributed as a Docker image and is publicly available on GitHub an
     sc:url "http://www.biobix.be/mam/" .
 
 <https://bio.tools/mamba> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2258,
@@ -281941,7 +291443,7 @@ Internally uses RDKit, numpy, pandas and scikit-learn python packages.""" ;
     sc:url "https://github.com/CHLoschen/mamba" .
 
 <https://bio.tools/mamba-seq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0659,
@@ -281963,18 +291465,17 @@ Internally uses RDKit, numpy, pandas and scikit-learn python packages.""" ;
 
 <https://bio.tools/mambo> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2093" ;
-            sc:name "Data reference" ;
-            sc:sameAs "http://edamontology.org/data_2093" ],
+            sc:additionalType "http://edamontology.org/data_3736" ;
+            sc:encodingFormat "http://edamontology.org/format_3706" ;
+            sc:name "Ecological data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3736" ;
-            sc:name "Ecological data" ;
-            sc:sameAs "http://edamontology.org/data_3736" ] ;
+            sc:additionalType "http://edamontology.org/data_2093" ;
+            sc:name "Data reference" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_3617" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3172,
         edam:topic_3174,
@@ -281993,7 +291494,7 @@ Internally uses RDKit, numpy, pandas and scikit-learn python packages.""" ;
     biotools:primaryContact "Bas E. Dutilh" .
 
 <https://bio.tools/maml> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_0769,
@@ -282012,7 +291513,7 @@ Automated machine learning model building pipeline for microbiome data.""" ;
     sc:url "https://github.com/yangfenglong/mAML1.0" .
 
 <https://bio.tools/mammalian_gene_collection> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -282041,7 +291542,7 @@ Automated machine learning model building pipeline for microbiome data.""" ;
     biotools:primaryContact "National Institute of Health" .
 
 <https://bio.tools/mammogram> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_2640,
@@ -282059,7 +291560,7 @@ Automated machine learning model building pipeline for microbiome data.""" ;
     biotools:primaryContact "deepukv" .
 
 <https://bio.tools/mammogram-image-enhancement> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3382 ;
@@ -282074,18 +291575,30 @@ Automated machine learning model building pipeline for microbiome data.""" ;
     sc:url "https://www.mathworks.com/matlabcentral/fileexchange/50281-mammogram-image-enhancement" ;
     biotools:primaryContact "Darshan Yogendra" .
 
-<https://bio.tools/mamo> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_2640,
-        edam:topic_3168,
-        edam:topic_3444 ;
-    sc:citation <https://doi.org/10.14735/AMKO2019S6>,
-        "pubmed:31409076" ;
-    sc:description "> VERY_LOW CONFIDENCE! | > CORRECT NAME OF TOOL COULD ALSO BE 'BRIP1 RAD51C RAD51D', 'carriers BRIP1 RAD51C RAD51D', 'BRIP1 RAD51C', 'RAD51C RAD51D' | Recommendations for Preventive Care for Women with Rare Genetic Cause of Breast and Ovarian Cancer | Program mamografického screeningu v České republice | Výzkumný projekt řešený pod odbornou garancí Komise odborníků pro mamární diagnostiku (KOMD). Sběr a analýza dat z Programu mamografického screeningu v České republice. Organizační a edukační materiály o prevenci rakoviny prsu, on-line poradna pro veřejnost | MAMO.CZ : MAMOGRAFICKÝ SCREENING [ISSN 1804-0861]" ;
-    sc:name "mamo" ;
-    sc:url "http://www.mamo.cz" .
+<https://bio.tools/mamnet> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0625,
+        edam:topic_0634,
+        edam:topic_3175,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1093/BIB/BBAC195>,
+        "pubmed:35580841" ;
+    sc:description "Detecting and genotyping deletions and insertions based on long reads and a deep learning approach." ;
+    sc:featureList edam:operation_3196,
+        edam:operation_3227,
+        edam:operation_3228,
+        edam:operation_3802 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "MAMnet" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/micahvista/MAMnet" .
 
 <https://bio.tools/mamodel> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3372 ;
     sc:citation <https://doi.org/10.1186/1471-2105-7-349> ;
@@ -282100,7 +291613,7 @@ Automated machine learning model building pipeline for microbiome data.""" ;
     sc:url "http://www.cs.tut.fi/sgn/csb/mamodel/" .
 
 <https://bio.tools/mamot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0622,
@@ -282114,7 +291627,7 @@ Automated machine learning model building pipeline for microbiome data.""" ;
     biotools:primaryContact "Mauro Delorenzi" .
 
 <https://bio.tools/mamphea> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3053 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btq359> ;
@@ -282128,7 +291641,7 @@ Automated machine learning model building pipeline for microbiome data.""" ;
     sc:url "http://evol.nhri.org.tw/phenome/index.jsp?platform=mmus" .
 
 <https://bio.tools/mana_nomogram> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3403 ;
@@ -282140,7 +291653,7 @@ Automated machine learning model building pipeline for microbiome data.""" ;
     sc:url "http://www.MANA-nom.com" .
 
 <https://bio.tools/manaclust> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0625,
@@ -282159,7 +291672,7 @@ Automated machine learning model building pipeline for microbiome data.""" ;
     biotools:primaryContact "Supinda Bunyavanich" .
 
 <https://bio.tools/management-accession-numbers-sequences> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_3071 ;
@@ -282173,8 +291686,34 @@ Automated machine learning model building pipeline for microbiome data.""" ;
     sc:url "https://www.mathworks.com/matlabcentral/fileexchange/47871-management-of-accession-numbers-and-sequences" ;
     biotools:primaryContact "José Luis Ruiz" .
 
+<https://bio.tools/mandrake> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:name "Sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0196,
+        edam:topic_2885,
+        edam:topic_3305,
+        edam:topic_3315,
+        edam:topic_3796 ;
+    sc:citation <https://doi.org/10.1101/2021.10.28.466232> ;
+    sc:description "Visualising microbial population structure by embedding millions of genomes into a low-dimensional representation." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_0525,
+        edam:operation_3891,
+        edam:operation_3935 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "Mandrake" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://mandrake.readthedocs.io/en/latest/> ;
+    sc:url "https://gtonkinhill.github.io/mandrake-web/" .
+
 <https://bio.tools/mango> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0122,
         edam:topic_2269 ;
@@ -282190,7 +291729,7 @@ Automated machine learning model building pipeline for microbiome data.""" ;
     biotools:primaryContact "PHANSTIEL LAB" .
 
 <https://bio.tools/mango_eda> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654 ;
     sc:citation <https://doi.org/10.1016/J.CELS.2019.11.002>,
@@ -282205,8 +291744,21 @@ Free document hosting provided by Read the Docs.""" ;
     sc:name "Mango_EDA" ;
     sc:url "https://bdg-mango.readthedocs.io/en/latest/" .
 
+<https://bio.tools/mango_prediction_of_protein_function_from_manually_annotated_proteins_based_on_go_gene_ontology> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:description "MANGO: Prediction of Protein Function from Manually Annotated proteins based on GO (Gene Ontology)" ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "mango : Prediction of Protein Function from Manually Annotated proteins based on GO (Gene Ontology)" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/mango/> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/mango/" .
+
 <https://bio.tools/manhattan-plots-visualisation-gwas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_2885,
@@ -282224,7 +291776,7 @@ Free document hosting provided by Read the Docs.""" ;
     biotools:primaryContact "Harry Green" .
 
 <https://bio.tools/maniea> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3474,
         edam:topic_3697 ;
@@ -282240,7 +291792,7 @@ Free document hosting provided by Read the Docs.""" ;
     biotools:primaryContact "Kewei Yang" .
 
 <https://bio.tools/maninetcluster> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0121,
@@ -282262,18 +291814,8 @@ A novel manifold learning approach to reveal thefunctional links between gene ne
         "Windows" ;
     sc:url "https://github.com/daifengwanglab/ManiNetCluster" .
 
-<https://bio.tools/manipulatives_nursing_education> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3474,
-        edam:topic_3489,
-        edam:topic_3912 ;
-    sc:citation <https://doi.org/10.1111/NUF.12387>,
-        "pubmed:31506941" ;
-    sc:description "> CORRECT NAME OF TOOL COULD ALSO BE 'manipulatives' | Manipulatives in nursing education | Definition of Manipulatives at Dictionary.com | Manipulatives definition, influencing or attempting to influence the behavior or emotions of others for one’s own purposes: a manipulative boss. See more | Dictionary.com and Thesaurus.com use cookies to enhance {see also: improve, boost} your experience. By continuing without changing your settings, you agree to this use. To provide the best {see also: finest, first-rate} English dictionary and thesaurus on the web for free, we also request your permission for us and our partners to use cookies to personalize ads. To allow this, please click \"Accept Cookies.\" Need more info? Take a bite out of our ∙ Cookie Policy | https://www.appnexus.com/en/company/platform-privacy-policy" ;
-    sc:name "manipulatives nursing education" ;
-    sc:url "http://www.dictionary.com/browse/manipulatives" .
-
 <https://bio.tools/manor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3321,
@@ -282294,8 +291836,31 @@ A novel manifold learning approach to reveal thefunctional links between gene ne
     sc:url "http://bioconductor.org/packages/release/bioc/html/MANOR.html" ;
     biotools:primaryContact "Pierre Neuvial" .
 
+<https://bio.tools/manoraa> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2301" ;
+            sc:name "SMILES string" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0209,
+        edam:topic_0632,
+        edam:topic_2828,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1016/J.STR.2021.09.004>,
+        "pubmed:34614393" ;
+    sc:description "A machine learning platform to guide protein-ligand design by anchors and influential distances." ;
+    sc:featureList edam:operation_2429,
+        edam:operation_4009 ;
+    sc:isAccessibleForFree true ;
+    sc:name "MANORAA" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://manoraa.org" .
+
 <https://bio.tools/manorm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3169,
@@ -282312,7 +291877,7 @@ A novel manifold learning approach to reveal thefunctional links between gene ne
     sc:url "http://bcb.dfci.harvard.edu/~gcyuan/MAnorm/MAnorm.htm" .
 
 <https://bio.tools/manorm_2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0621,
@@ -282336,7 +291901,7 @@ MAnorm2_utils is designed to coordinate with MAnorm2, an R package for different
     sc:url "https://pypi.org/project/MAnorm2-utils" .
 
 <https://bio.tools/manta> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3174,
@@ -282356,7 +291921,7 @@ MAnorm2_utils is designed to coordinate with MAnorm2, an R package for different
         "Chris Berthiaume" .
 
 <https://bio.tools/manta_db> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Database portal" ;
     sc:applicationSubCategory edam:topic_0102,
@@ -282380,7 +291945,7 @@ Microbiota And pheNotype correlaTion Analysis platform.""" ;
     sc:url "https://mizuguchilab.org/manta/" .
 
 <https://bio.tools/manta_sv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3053,
@@ -282395,7 +291960,7 @@ Microbiota And pheNotype correlaTion Analysis platform.""" ;
     sc:url "https://github.com/Illumina/manta" .
 
 <https://bio.tools/mantel-haenszel-test> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_2269 ;
@@ -282416,7 +291981,7 @@ Microbiota And pheNotype correlaTion Analysis platform.""" ;
     biotools:primaryContact "Steinar Thorvaldsen" .
 
 <https://bio.tools/mantelcorr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -282435,7 +292000,7 @@ Microbiota And pheNotype correlaTion Analysis platform.""" ;
     biotools:primaryContact "Brian Steinmeyer" .
 
 <https://bio.tools/manti> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -282457,7 +292022,7 @@ Microbiota And pheNotype correlaTion Analysis platform.""" ;
     sc:url "https://MANTI.sourceforge.io" .
 
 <https://bio.tools/mantis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_3299,
@@ -282478,7 +292043,7 @@ Microbiota And pheNotype correlaTion Analysis platform.""" ;
     biotools:primaryContact "Jose Lourenco" .
 
 <https://bio.tools/mantis-ml> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3322,
@@ -282497,7 +292062,7 @@ Microbiota And pheNotype correlaTion Analysis platform.""" ;
     sc:url "https://dvitsios.github.io/mantis-ml-predictions" .
 
 <https://bio.tools/mantis_ga> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0160,
@@ -282515,16 +292080,36 @@ This tool can be used for protein function annotation, it is a standalone tool t
     sc:name "Mantis_GA" ;
     sc:url "https://github.com/PedroMTQ/mantis" .
 
+<https://bio.tools/mantis_index> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0080,
+        edam:topic_0203,
+        edam:topic_3170,
+        edam:topic_3315 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC142>,
+        "pubmed:35325039" ;
+    sc:description "Mantis is a space-efficient data structure that can be used to index thousands of raw- read experiments and facilitate large-scale sequence searches on those experiments. Mantis uses counting quotient filters instead of Bloom filters, enabling rapid index builds and queries, small indexes, and exact results, i.e., no false positives or negatives." ;
+    sc:featureList edam:operation_0524,
+        edam:operation_2421,
+        edam:operation_2422,
+        edam:operation_3472 ;
+    sc:isAccessibleForFree true ;
+    sc:license "BSD-3-Clause" ;
+    sc:name "Mantis" ;
+    sc:operatingSystem "Linux" ;
+    sc:url "https://github.com/splatlab/mantis/tree/mergeMSTs" .
+
 <https://bio.tools/mantis_pfa> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0896" ;
-            sc:name "Protein report" ;
-            sc:sameAs "http://edamontology.org/data_0896" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0896" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Protein report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_1775 ;
     sc:citation <https://doi.org/10.1101/2020.11.02.360933> ;
@@ -282540,7 +292125,7 @@ This tool can be used for protein function annotation, it is a standalone tool t
     biotools:primaryContact "Pedro Queirós" .
 
 <https://bio.tools/mantra> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2259,
@@ -282557,7 +292142,7 @@ This tool can be used for protein function annotation, it is a standalone tool t
     sc:url "http://mantra.tigem.it/" .
 
 <https://bio.tools/map4> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0209,
@@ -282584,7 +292169,7 @@ TMAPs of the ChEMBL, non-Lipinski ChEMBL, Human Metabolome, SwissProt up to 50 r
     sc:url "http://tm.gdb.tools/map4/" .
 
 <https://bio.tools/mapanalyzer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0219,
@@ -282603,7 +292188,7 @@ TMAPs of the ChEMBL, non-Lipinski ChEMBL, Human Metabolome, SwissProt up to 50 r
         "Yuan Zhou (for prediction server-related issues)" .
 
 <https://bio.tools/mapbayr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2269,
@@ -282625,7 +292210,7 @@ TMAPs of the ChEMBL, non-Lipinski ChEMBL, Human Metabolome, SwissProt up to 50 r
     sc:url "https://github.com/FelicienLL/mapbayr" .
 
 <https://bio.tools/mapdamage> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3168 ;
@@ -282642,8 +292227,29 @@ TMAPs of the ChEMBL, non-Lipinski ChEMBL, Human Metabolome, SwissProt up to 50 r
         "Hákon Jónsson",
         "Mikkel Schubert" .
 
+<https://bio.tools/mapdatage> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_0654,
+        edam:topic_3168 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC425>,
+        "pubmed:35771611" ;
+    sc:description "A ShinyR package to chart ancient DNA data through space and time." ;
+    sc:featureList edam:operation_0573,
+        edam:operation_2939,
+        edam:operation_3891 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "mapDATAge" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/xuefenfei712/mapDATAge" .
+
 <https://bio.tools/mapdia> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0121,
@@ -282660,7 +292266,7 @@ TMAPs of the ChEMBL, non-Lipinski ChEMBL, Human Metabolome, SwissProt up to 50 r
     biotools:primaryContact "Hyungwon Choi" .
 
 <https://bio.tools/mapdisto> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3053 ;
@@ -282677,7 +292283,7 @@ TMAPs of the ChEMBL, non-Lipinski ChEMBL, Human Metabolome, SwissProt up to 50 r
     sc:url "http://mapdisto.free.fr/MapDisto/" .
 
 <https://bio.tools/mapdp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -282696,7 +292302,7 @@ MHC-associated peptide discovery platform.""" ;
     sc:url "https://gitlab.com/iric-proteo/mapdp" .
 
 <https://bio.tools/mapexr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0622,
@@ -282716,7 +292322,7 @@ MHC-associated peptide discovery platform.""" ;
         "Ryan N Gutenkunst" .
 
 <https://bio.tools/mapgaps> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0080 ;
@@ -282730,7 +292336,7 @@ MHC-associated peptide discovery platform.""" ;
     sc:url "http://mapgaps.igs.umaryland.edu/" .
 
 <https://bio.tools/mapgl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0621,
@@ -282754,7 +292360,7 @@ This repository can be used to reproduce source data and results contributing to
     sc:url "https://github.com/adadiehl/mapGL" .
 
 <https://bio.tools/mapi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_3307,
@@ -282777,8 +292383,30 @@ This repository can be used to reproduce source data and results contributing to
     sc:url "http://bitlab-es.com/mapi/" ;
     biotools:primaryContact "Esteban Pérez-Wohlfeil" .
 
+<https://bio.tools/mapiya> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0081,
+        edam:topic_0128,
+        edam:topic_0196 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAC307>,
+        "pmcid:PMC9252833",
+        "pubmed:35524560" ;
+    sc:description "MAPIYA contact map server for identification and visualization of molecular interactions in proteins and biological complexes." ;
+    sc:featureList edam:operation_0272,
+        edam:operation_0310,
+        edam:operation_0337,
+        edam:operation_0478,
+        edam:operation_2429 ;
+    sc:isAccessibleForFree true ;
+    sc:name "Mapiya" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://mapiya.lcbio.pl/" .
+
 <https://bio.tools/mapkl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -282796,8 +292424,29 @@ This repository can be used to reproduce source data and results contributing to
     sc:url "http://bioconductor.org/packages/release/bioc/html/mAPKL.html" ;
     biotools:primaryContact "Argiris Sakellariou" .
 
+<https://bio.tools/maplaria> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_0749,
+        edam:topic_2269 ;
+    sc:citation <https://doi.org/10.1186/S12936-021-04011-7>,
+        "pmcid:PMC8686323",
+        "pubmed:34930265" ;
+    sc:description "A user friendly web-application for spatio-temporal malaria prevalence mapping." ;
+    sc:featureList edam:operation_2429,
+        edam:operation_3359,
+        edam:operation_3436 ;
+    sc:isAccessibleForFree true ;
+    sc:name "Maplaria" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://fhm-chicas-Maplaria.lancs.ac.uk/page/methods> ;
+    sc:url "https://fhm-chicas-Maplaria.lancs.ac.uk" .
+
 <https://bio.tools/maple> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -282819,8 +292468,30 @@ This repository can be used to reproduce source data and results contributing to
     sc:url "http://maple.rx.umaryland.edu/" ;
     biotools:primaryContact <https://orcid.org/0000-0002-5525-9170> .
 
+<https://bio.tools/maplet> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0749,
+        edam:topic_0769,
+        edam:topic_3172 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAB741>,
+        "pmcid:PMC8796365",
+        "pubmed:34694386" ;
+    sc:description "An extensible R toolbox for modular and reproducible metabolomics pipelines." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3557,
+        edam:operation_3891 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "maplet" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://github.com/krumsieklab/maplet/blob/main/guide/maplet_Reference_Guide_markdown.md> ;
+    sc:url "https://github.com/krumsieklab/maplet" .
+
 <https://bio.tools/mapman> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -282837,7 +292508,7 @@ This repository can be used to reproduce source data and results contributing to
     biotools:primaryContact "MapMan Team" .
 
 <https://bio.tools/mapmecfs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3334,
@@ -282854,7 +292525,7 @@ This repository can be used to reproduce source data and results contributing to
     biotools:primaryContact <https://orcid.org/0000-0001-6785-0032> .
 
 <https://bio.tools/mapmi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0102,
@@ -282875,7 +292546,7 @@ This repository can be used to reproduce source data and results contributing to
     biotools:primaryContact "Anton Enright" .
 
 <https://bio.tools/mapp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3120 ;
@@ -282893,42 +292564,42 @@ This repository can be used to reproduce source data and results contributing to
 
 <https://bio.tools/mapperanalyzer> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1975" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ],
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Sequence trace" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_3003" ;
+            sc:name "Annotation track" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1975" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ],
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
+            sc:name "Sequence trace" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1975" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:citation <https://doi.org/10.1093/nar/gkw343>,
@@ -282946,7 +292617,7 @@ This repository can be used to reproduce source data and results contributing to
     biotools:primaryContact "Galaxy Support Team" .
 
 <https://bio.tools/mapperdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_2815,
@@ -282963,7 +292634,7 @@ This repository can be used to reproduce source data and results contributing to
     sc:url "http://genome.ufl.edu/mapperdb" .
 
 <https://bio.tools/mappertrac> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3304,
@@ -282981,7 +292652,7 @@ Massively Parallel, Portable, and Reproducible Tractography (MaPPeRTrac) is a br
     sc:url "https://github.com/LLNL/MaPPeRTrac" .
 
 <https://bio.tools/mappi-dat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0203,
         edam:topic_0621,
@@ -283001,7 +292672,7 @@ MAPPI-DAT (Mappit microArray Protein Protein Interaction- Data management & Anal
     sc:url "https://github.com/compomics/MAPPI-DAT" .
 
 <https://bio.tools/mapping_tool> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0602,
@@ -283017,82 +292688,82 @@ MAPPI-DAT (Mappit microArray Protein Protein Interaction- Data management & Anal
 
 <https://bio.tools/mappinghsp4taxo> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ],
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Image" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ],
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Image" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Image" ],
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-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ],
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
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         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ],
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
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-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ],
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
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-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ],
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
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-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ],
+            sc:additionalType "http://edamontology.org/data_2968" ;
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-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ],
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
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-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ],
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
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-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ],
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Image" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ],
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Image" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ],
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Image" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ],
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Image" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Image" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0637,
@@ -283112,7 +292783,7 @@ MAPPI-DAT (Mappit microArray Protein Protein Interaction- Data management & Anal
     biotools:primaryContact "Galaxy Support Team" .
 
 <https://bio.tools/mappis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0128,
@@ -283134,7 +292805,7 @@ MAPPI-DAT (Mappit microArray Protein Protein Interaction- Data management & Anal
     biotools:primaryContact "Alexandra Shulman-Peleg" .
 
 <https://bio.tools/mappop> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3053,
@@ -283150,22 +292821,22 @@ MAPPI-DAT (Mappit microArray Protein Protein Interaction- Data management & Anal
 
 <https://bio.tools/mapquant> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ],
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3245" ;
+            sc:name "Mass spectrometry spectra" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3245" ;
+            sc:name "Mass spectrometry spectra" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ],
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Plot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_2058" ;
+            sc:name "Expression data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0121,
@@ -283187,7 +292858,7 @@ MAPPI-DAT (Mappit microArray Protein Protein Interaction- Data management & Anal
     sc:url "http://arep.med.harvard.edu/MapQuant/index.html" .
 
 <https://bio.tools/mapredictdsc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3071,
@@ -283206,7 +292877,7 @@ MAPPI-DAT (Mappit microArray Protein Protein Interaction- Data management & Anal
     biotools:primaryContact "Adi Laurentiu Tarca" .
 
 <https://bio.tools/maps-phenotype> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0625,
@@ -283228,26 +292899,21 @@ MAPPI-DAT (Mappit microArray Protein Protein Interaction- Data management & Anal
 
 <https://bio.tools/mapscape> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3546" ;
-            sc:name "Image metadata" ;
-            sc:sameAs "http://edamontology.org/data_3546" ],
+            sc:additionalType "http://edamontology.org/data_3424" ;
+            sc:name "Raw image" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0920" ;
-            sc:name "Genotype/phenotype report" ;
-            sc:sameAs "http://edamontology.org/data_0920" ],
+            sc:additionalType "http://edamontology.org/data_3546" ;
+            sc:name "Image metadata" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3424" ;
-            sc:name "Raw image" ;
-            sc:sameAs "http://edamontology.org/data_3424" ],
+            sc:additionalType "http://edamontology.org/data_2523" ;
+            sc:name "Phylogenetic data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2523" ;
-            sc:name "Phylogenetic data" ;
-            sc:sameAs "http://edamontology.org/data_2523" ] ;
+            sc:additionalType "http://edamontology.org/data_0920" ;
+            sc:name "Genotype/phenotype report" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_2229,
@@ -283268,7 +292934,7 @@ MAPPI-DAT (Mappit microArray Protein Protein Interaction- Data management & Anal
     biotools:primaryContact "Maia Smith" .
 
 <https://bio.tools/mapsci> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078 ;
     sc:citation <https://doi.org/10.1186/1471-2105-11-71> ;
@@ -283286,22 +292952,22 @@ MAPPI-DAT (Mappit microArray Protein Protein Interaction- Data management & Anal
 
 <https://bio.tools/mapsembler> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ],
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Nucleic acid sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2975" ;
-            sc:name "Nucleic acid sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_2975" ] ;
+            sc:additionalType "http://edamontology.org/data_2975" ;
+            sc:encodingFormat "http://edamontology.org/format_2182" ;
+            sc:name "Nucleic acid sequence (raw)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ],
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Pathway or network" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Nucleic acid sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196 ;
     sc:citation <https://doi.org/10.1186/1471-2105-13-48> ;
@@ -283318,7 +292984,7 @@ MAPPI-DAT (Mappit microArray Protein Protein Interaction- Data management & Anal
     biotools:primaryContact "Pierre Peterlongo" .
 
 <https://bio.tools/mapseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0160,
@@ -283334,7 +293000,7 @@ MAPPI-DAT (Mappit microArray Protein Protein Interaction- Data management & Anal
     biotools:primaryContact "Christian von Mering" .
 
 <https://bio.tools/mapsplice> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3170 ;
     sc:citation "pubmed:20802226" ;
@@ -283347,7 +293013,7 @@ MAPPI-DAT (Mappit microArray Protein Protein Interaction- Data management & Anal
     biotools:primaryContact "Support" .
 
 <https://bio.tools/mapview> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0199,
@@ -283369,7 +293035,7 @@ MAPPI-DAT (Mappit microArray Protein Protein Interaction- Data management & Anal
         "Suhua Shi" .
 
 <https://bio.tools/maq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622 ;
     sc:citation <https://doi.org/10.1101/gr.078212.108>,
@@ -283389,7 +293055,7 @@ MAPPI-DAT (Mappit microArray Protein Protein Interaction- Data management & Anal
     biotools:primaryContact <http://orcid.org/0000-0003-4874-2874> .
 
 <https://bio.tools/maqgene> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2885 ;
     sc:citation "pubmed:19620971" ;
@@ -283403,7 +293069,7 @@ MAPPI-DAT (Mappit microArray Protein Protein Interaction- Data management & Anal
     biotools:primaryContact "Henry Bigelow" .
 
 <https://bio.tools/maqview> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0092 ;
     sc:description "Graphical read alignment viewer. It is specifically designed for the Maq alignment file and allows visualization of the mismatches, base qualities and mapping qualities. Maqview is nothing fancy as Consed or GAP, but just a simple viewer for visualizing what happens in a particular region." ;
@@ -283414,8 +293080,33 @@ MAPPI-DAT (Mappit microArray Protein Protein Interaction- Data management & Anal
     sc:softwareHelp <http://maq.sourceforge.net/maqview-man.shtml> ;
     sc:url "http://maq.sourceforge.net/maqview.shtml" .
 
+<https://bio.tools/maracas> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_3169,
+        edam:topic_3170,
+        edam:topic_3512,
+        edam:topic_3810 ;
+    sc:citation <https://doi.org/10.1186/S12859-022-04639-5>,
+        "pmcid:PMC8973887",
+        "pubmed:35361110" ;
+    sc:description "ALGAEFUN with MARACAS, microALGAE FUNctional enrichment tool for MicroAlgae RnA-seq and Chip-seq AnalysiS." ;
+    sc:featureList edam:operation_2436,
+        edam:operation_3223,
+        edam:operation_3431,
+        edam:operation_3680,
+        edam:operation_3800 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "MARACAS" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/fran-romero-campero/MARACAS" .
+
 <https://bio.tools/marbl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0622,
@@ -283431,7 +293122,7 @@ MAPPI-DAT (Mappit microArray Protein Protein Interaction- Data management & Anal
     biotools:primaryContact "Kevin C. O'Kane" .
 
 <https://bio.tools/marcat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_3174,
         edam:topic_3301,
@@ -283456,7 +293147,7 @@ MAPPI-DAT (Mappit microArray Protein Protein Interaction- Data management & Anal
     biotools:primaryContact "The MMP team" .
 
 <https://bio.tools/marcoil> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0081,
@@ -283475,8 +293166,28 @@ MAPPI-DAT (Mappit microArray Protein Protein Interaction- Data management & Anal
     sc:url "http://bcf.isb-sib.ch/webmarcoil/webmarcoilINFOC1.html" ;
     biotools:primaryContact "Mauro Delorenzi" .
 
+<https://bio.tools/marcopolo> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_2229,
+        edam:topic_3170 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAC216>,
+        "pubmed:35420135" ;
+    sc:description "A method to discover differentially expressed genes in single-cell RNA-seq data without depending on prior clustering." ;
+    sc:featureList edam:operation_0313,
+        edam:operation_2844,
+        edam:operation_3435 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Other" ;
+    sc:name "MarcoPolo" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/chanwkimlab/MarcoPolo" .
+
 <https://bio.tools/mardb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3301,
@@ -283500,7 +293211,7 @@ MAPPI-DAT (Mappit microArray Protein Protein Interaction- Data management & Anal
     sc:url "https://mmp.sfb.uit.no/databases/mardb/" .
 
 <https://bio.tools/mare> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3070,
@@ -283520,7 +293231,7 @@ MaRe has been developed with scientific application in mind. High-throughput met
     sc:url "https://github.com/mcapuccini/MaRe" .
 
 <https://bio.tools/marea> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3387 ;
@@ -283537,7 +293248,7 @@ MaRe has been developed with scientific application in mind. High-throughput met
     biotools:primaryContact "Juan Carlos Villaseñor-Derbez" .
 
 <https://bio.tools/mares> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0637,
@@ -283561,8 +293272,57 @@ These scripts support the MARES (MARine Eukaryote Species) pipeline used to crea
     sc:name "MARES" ;
     sc:url "https://github.com/wpearman1996/MARES_database_pipeline" .
 
+<https://bio.tools/maresnet> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "DNA sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0749,
+        edam:topic_3169,
+        edam:topic_3474,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.1093/BIB/BBAB445>,
+        "pmcid:PMC8769703",
+        "pubmed:34664074" ;
+    sc:description "Predicting transcription factor binding sites by combining multi-scale bottom-up and top-down attention and residual network." ;
+    sc:featureList edam:operation_0445,
+        edam:operation_2575,
+        edam:operation_4009 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "MAResNet" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://csbio.njust.edu.cn/bioinf/maresnet/" .
+
+<https://bio.tools/margaret> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0099,
+        edam:topic_0749,
+        edam:topic_2229,
+        edam:topic_3170,
+        edam:topic_3308 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAC412>,
+        "pubmed:35639499" ;
+    sc:description "MARGARET is a computational tool for Trajectory Inference i.e. for inferring trajectories underlying biological developmental processes like cell-differentiation." ;
+    sc:featureList edam:operation_3799,
+        edam:operation_3890,
+        edam:operation_3891,
+        edam:operation_3935 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "MARGARET" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/Zafar-Lab/Margaret" .
+
 <https://bio.tools/marge> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3169 ;
     sc:citation <https://doi.org/10.1101/gr.201574.115> ;
@@ -283577,7 +293337,7 @@ These scripts support the MARES (MARine Eukaryote Species) pipeline used to crea
     sc:url "http://cistrome.org/MARGE/" .
 
 <https://bio.tools/marginalcausality> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602 ;
@@ -283593,8 +293353,73 @@ These scripts support the MARES (MARine Eukaryote Species) pipeline used to crea
     sc:url "https://github.com/Monneret/MarginalCausality" ;
     biotools:primaryContact "Gilles Monneret" .
 
+<https://bio.tools/marginalign> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1916" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
+            sc:name "Alignment" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Nucleic acid sequence" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:encodingFormat "http://edamontology.org/format_2182" ;
+            sc:name "Nucleic acid sequence" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence record" ] ;
+    bsc:output [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1364" ;
+            sc:encodingFormat "http://edamontology.org/format_2072" ;
+            sc:name "Hidden Markov model" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence variations" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1916" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
+            sc:name "Alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library",
+        "Script" ;
+    sc:applicationSubCategory edam:topic_0102 ;
+    sc:author "Benedict Paten" ;
+    sc:citation <https://doi.org/10.1038/nmeth.3290> ;
+    sc:description "The marginAlign package can be used to align reads to a reference genome and call single nucleotide variations (SNVs). It is specifically tailored for Oxford Nanopore Reads." ;
+    sc:featureList edam:operation_3198,
+        edam:operation_3227 ;
+    sc:license "MIT" ;
+    sc:name "marginAlign" ;
+    sc:url "https://github.com/benedictpaten/marginAlign" ;
+    biotools:primaryContact "Benedict Paten",
+        "Mark Akeson" .
+
+<https://bio.tools/marginphase> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Nucleic acid sequence" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1916" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0625 ;
+    sc:description "MarginPhase is a program for simultaneous haplotyping and genotyping." ;
+    sc:featureList edam:operation_0487,
+        edam:operation_3196 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "marginPhase" ;
+    sc:url "https://github.com/benedictpaten/marginPhase" ;
+    biotools:primaryContact "Benedict Paten" .
+
 <https://bio.tools/mariboes> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0821,
         edam:topic_1775 ;
@@ -283610,7 +293435,7 @@ These scripts support the MARES (MARine Eukaryote Species) pipeline used to crea
     biotools:primaryContact "Thomas Abeel" .
 
 <https://bio.tools/mark2cure> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0218,
         edam:topic_0605,
@@ -283632,18 +293457,18 @@ Progress in biomedical science is all about incrementally building off of the wo
 
 <https://bio.tools/markduplicates_ip> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ],
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Sequence trace" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:citation <https://doi.org/10.1093/nar/gkw343>,
@@ -283660,7 +293485,7 @@ Progress in biomedical science is all about incrementally building off of the wo
     biotools:primaryContact "Galaxy Support Team" .
 
 <https://bio.tools/marker-free> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3452 ;
@@ -283673,7 +293498,7 @@ Progress in biomedical science is all about incrementally building off of the wo
     sc:url "https://github.com/icthrm/joint-marker-free-alignment" .
 
 <https://bio.tools/markercapsule> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2229,
@@ -283688,7 +293513,7 @@ MarkerCapsule is a genneral framework for identifying cell types from single cel
     sc:url "https://github.com/sumantaray/MarkerCapsule" .
 
 <https://bio.tools/markerdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0634,
@@ -283706,8 +293531,47 @@ MarkerDB is a freely available electronic database that attempts to consolidate
     sc:name "MarkerDB" ;
     sc:url "https://markerdb.ca" .
 
+<https://bio.tools/markermag> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_0659,
+        edam:topic_3174,
+        edam:topic_3293 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC398>,
+        "pubmed:35713513" ;
+    sc:description "Linking metagenome-assembled genomes (MAGs) with 16S rRNA marker genes using paired-end short reads." ;
+    sc:featureList edam:operation_0310,
+        edam:operation_3198,
+        edam:operation_3233 ;
+    sc:isAccessibleForFree true ;
+    sc:license "AGPL-3.0" ;
+    sc:name "MarkerMAG" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/songweizhi/MarkerMAG" .
+
+<https://bio.tools/markerml> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3174,
+        edam:topic_3360,
+        edam:topic_3474,
+        edam:topic_3697 ;
+    sc:citation <https://doi.org/10.1016/J.JMB.2022.167589>,
+        "pubmed:35662460" ;
+    sc:description "Marker Feature Identification in Metagenomic Datasets Using Interpretable Machine Learning." ;
+    sc:featureList edam:operation_2238 ;
+    sc:isAccessibleForFree true ;
+    sc:name "MarkerML" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://microbiome.igib.res.in/markerml/" .
+
 <https://bio.tools/markerpen> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_2229,
@@ -283729,7 +293593,7 @@ MarkerDB is a freely available electronic database that attempts to consolidate
         "Kathryn Roeder" .
 
 <https://bio.tools/markophylo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0623,
@@ -283747,7 +293611,7 @@ MarkerDB is a freely available electronic database that attempts to consolidate
     biotools:primaryContact "Utkarsh J. Dang" .
 
 <https://bio.tools/markovhc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_2640,
@@ -283765,7 +293629,7 @@ MarkovHC is an open-source R package designed for explore hierarchical structure
     sc:url "https://github.com/ZhenyiWangTHU/MarkovHC" .
 
 <https://bio.tools/markus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0081,
@@ -283787,7 +293651,7 @@ MarkovHC is an open-source R package designed for explore hierarchical structure
     biotools:primaryContact "Support" .
 
 <https://bio.tools/marky> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0219,
         edam:topic_3071 ;
@@ -283806,14 +293670,14 @@ MarkovHC is an open-source R package designed for explore hierarchical structure
 
 <https://bio.tools/marna> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3495" ;
-            sc:name "RNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3495" ] ;
+            sc:additionalType "http://edamontology.org/data_3495" ;
+            sc:encodingFormat "http://edamontology.org/format_2200" ;
+            sc:name "RNA sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1916" ;
-            sc:name "Alignment" ;
-            sc:sameAs "http://edamontology.org/data_1916" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1916" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:author "RNA Team Freiburg" ;
@@ -283835,7 +293699,7 @@ MarkovHC is an open-source R package designed for explore hierarchical structure
         "RNA Team Freiburg" .
 
 <https://bio.tools/marome> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3511 ;
     sc:author <https://orcid.org/0000-0002-1368-307X> ;
@@ -283848,7 +293712,7 @@ MarkovHC is an open-source R package designed for explore hierarchical structure
     sc:url "http://bioinfo.net.in/MARome" .
 
 <https://bio.tools/marq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -283864,7 +293728,7 @@ MarkovHC is an open-source R package designed for explore hierarchical structure
     sc:url "http://marq.dacya.ucm.es" .
 
 <https://bio.tools/marr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
@@ -283892,7 +293756,7 @@ MarkovHC is an open-source R package designed for explore hierarchical structure
     sc:url "https://maxmcgrath.shinyapps.io/marr/" .
 
 <https://bio.tools/marray> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -283912,7 +293776,7 @@ MarkovHC is an open-source R package designed for explore hierarchical structure
     biotools:primaryContact "Yee Hwa (Jean) Yang" .
 
 <https://bio.tools/marray-microarray> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0659,
@@ -283931,7 +293795,7 @@ MarkovHC is an open-source R package designed for explore hierarchical structure
     biotools:primaryContact "junbai wang" .
 
 <https://bio.tools/marref> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3301,
@@ -283955,7 +293819,7 @@ MarkovHC is an open-source R package designed for explore hierarchical structure
     biotools:primaryContact "The MMP team" .
 
 <https://bio.tools/marrvel> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_3053,
@@ -283970,7 +293834,7 @@ MarkovHC is an open-source R package designed for explore hierarchical structure
     biotools:primaryContact "Zhandong Liu" .
 
 <https://bio.tools/mars> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0736,
         edam:topic_2814 ;
@@ -283985,7 +293849,7 @@ MarkovHC is an open-source R package designed for explore hierarchical structure
     biotools:primaryContact "Markus Zweckstetter" .
 
 <https://bio.tools/mars_ml> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_2640,
         edam:topic_3304,
@@ -284009,7 +293873,7 @@ MARS's novel approach to extracting features from the animals' poses and traject
     sc:url "https://neuroethology.github.io/MARS/" .
 
 <https://bio.tools/mars_sv_calling> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3125,
@@ -284031,14 +293895,12 @@ MARS's novel approach to extracting features from the animals' poses and traject
 
 <https://bio.tools/marscan> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2887" ;
-            sc:name "Nucleic acid sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2887" ] ;
+            sc:additionalType "http://edamontology.org/data_2887" ;
+            sc:name "Nucleic acid sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1276" ;
-            sc:name "Nucleic acid features" ;
-            sc:sameAs "http://edamontology.org/data_1276" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1276" ;
+            sc:name "Nucleic acid features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3053 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -284068,7 +293930,7 @@ MARS's novel approach to extracting features from the animals' poses and traject
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/marscan.html" .
 
 <https://bio.tools/marsi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0140,
         edam:topic_0154,
@@ -284083,7 +293945,7 @@ MARS's novel approach to extracting features from the animals' poses and traject
     biotools:primaryContact "Markus J Herrgård" .
 
 <https://bio.tools/marspred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0659,
@@ -284096,11 +293958,11 @@ MARS's novel approach to extracting features from the animals' poses and traject
         "Mac",
         "Windows" ;
     sc:softwareHelp <http://crdd.osdd.net/raghava//marspred/help.php> ;
-    sc:url "http://www.imtech.res.in/raghava/marspred/" ;
+    sc:url "http://webs.iiitd.edu.in/raghava/marspred/" ;
     biotools:primaryContact "Bharat Panwar" .
 
 <https://bio.tools/martini> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_2885,
@@ -284121,7 +293983,7 @@ MARS's novel approach to extracting features from the animals' poses and traject
     biotools:primaryContact "Hector Climente-Gonzalez" .
 
 <https://bio.tools/martini-forcefield> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0153,
@@ -284141,7 +294003,7 @@ MARS's novel approach to extracting features from the animals' poses and traject
     sc:url "http://cgmartini.nl" .
 
 <https://bio.tools/martview> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0634,
@@ -284162,7 +294024,7 @@ MARS's novel approach to extracting features from the animals' poses and traject
     biotools:primaryContact "Arek Kasprzyk" .
 
 <https://bio.tools/marv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0622,
@@ -284181,7 +294043,7 @@ MARS's novel approach to extracting features from the animals' poses and traject
     biotools:primaryContact "Marika Kaakinen" .
 
 <https://bio.tools/marvin> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3053,
@@ -284195,8 +294057,32 @@ MARS's novel approach to extracting features from the animals' poses and traject
     sc:softwareHelp <https://github.com/Illumina/MarViN/blob/master/README.md> ;
     sc:url "https://github.com/illumina/marvin" .
 
+<https://bio.tools/mas> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0091,
+        edam:topic_0154,
+        edam:topic_0621,
+        edam:topic_0622,
+        edam:topic_3316 ;
+    sc:citation <https://doi.org/10.1186/S12864-021-08029-8>,
+        "pmcid:PMC8501643",
+        "pubmed:34627149" ;
+    sc:description "Manual Annotation Studio (MAS) is a web server which assists users in the process of identifying coding regions and determining the function of genes." ;
+    sc:featureList edam:operation_0362,
+        edam:operation_2421,
+        edam:operation_3431,
+        edam:operation_3778 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "MAS" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/BDRD-Genomics/MAS" .
+
 <https://bio.tools/masc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3168 ;
@@ -284212,14 +294098,14 @@ MARS's novel approach to extracting features from the animals' poses and traject
 
 <https://bio.tools/mascot2xml> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ] ;
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:encodingFormat "http://edamontology.org/format_3713" ;
+            sc:name "Mass spectrometry data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:encodingFormat "http://edamontology.org/format_3655" ;
+            sc:name "Mass spectrometry data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121 ;
@@ -284230,14 +294116,12 @@ MARS's novel approach to extracting features from the animals' poses and traject
 
 <https://bio.tools/mascotdatfile> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ] ;
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:name "Mass spectrometry data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:name "Mass spectrometry data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0121,
@@ -284255,7 +294139,7 @@ MARS's novel approach to extracting features from the animals' poses and traject
     sc:url "http://compomics.github.io/projects/mascotdatfile.html" .
 
 <https://bio.tools/mascp_gator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0780,
@@ -284271,7 +294155,7 @@ MARS's novel approach to extracting features from the animals' poses and traject
     sc:url "http://gator.masc-proteomics.org/" .
 
 <https://bio.tools/mase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654 ;
@@ -284287,7 +294171,7 @@ MARS's novel approach to extracting features from the animals' poses and traject
     biotools:primaryContact "Database Administor" .
 
 <https://bio.tools/mash> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0622,
@@ -284306,7 +294190,7 @@ MARS's novel approach to extracting features from the animals' poses and traject
     biotools:primaryContact "Adam M. Phillippy" .
 
 <https://bio.tools/mash_explorer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -284328,7 +294212,7 @@ MASH Explorer is a comprehensive and user-friendly software environment for top-
     sc:url "http://ge.crb.wisc.edu/MASH_Explorer/index.htm" .
 
 <https://bio.tools/mashmap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
@@ -284349,7 +294233,7 @@ MASH Explorer is a comprehensive and user-friendly software environment for top-
         "Srinivas Aluru" .
 
 <https://bio.tools/masi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_2840,
@@ -284370,7 +294254,7 @@ Accumulating evidence about the interaction between human microbiota and active
     sc:url "http://www.aiddlab.com/MASI" .
 
 <https://bio.tools/masigpro> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -284391,7 +294275,7 @@ Accumulating evidence about the interaction between human microbiota and active
     biotools:primaryContact "Maria Jose Nueda" .
 
 <https://bio.tools/masive> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0102,
@@ -284409,14 +294293,12 @@ Accumulating evidence about the interaction between human microbiota and active
 
 <https://bio.tools/maskambignuc> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2887" ;
-            sc:name "Nucleic acid sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2887" ] ;
+            sc:additionalType "http://edamontology.org/data_2887" ;
+            sc:name "Nucleic acid sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2887" ;
-            sc:name "Nucleic acid sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2887" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2887" ;
+            sc:name "Nucleic acid sequence record" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -284447,14 +294329,12 @@ Accumulating evidence about the interaction between human microbiota and active
 
 <https://bio.tools/maskambigprot> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2886" ;
-            sc:name "Protein sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2886" ] ;
+            sc:additionalType "http://edamontology.org/data_2886" ;
+            sc:name "Protein sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -284484,7 +294364,7 @@ Accumulating evidence about the interaction between human microbiota and active
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/maskambigprot.html" .
 
 <https://bio.tools/maskbad> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -284504,14 +294384,12 @@ Accumulating evidence about the interaction between human microbiota and active
 
 <https://bio.tools/maskfeat> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0160 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -284541,7 +294419,7 @@ Accumulating evidence about the interaction between human microbiota and active
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/maskfeat.html" .
 
 <https://bio.tools/maskmitosis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3382,
@@ -284558,7 +294436,7 @@ Codes for our Medical & Biological Engineering & Computing paper "MaskMitosis: a
     sc:url "https://github.com/MeriemSebai/MaskMitosis" .
 
 <https://bio.tools/maskrc-svg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_3127 ;
@@ -284573,14 +294451,12 @@ Codes for our Medical & Biological Engineering & Computing paper "MaskMitosis: a
 
 <https://bio.tools/maskseq> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -284610,7 +294486,7 @@ Codes for our Medical & Biological Engineering & Computing paper "MaskMitosis: a
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/maskseq.html" .
 
 <https://bio.tools/mason> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622 ;
     sc:citation <https://doi.org/10.1371/journal.pone.0049110> ;
@@ -284627,7 +294503,7 @@ Codes for our Medical & Biological Engineering & Computing paper "MaskMitosis: a
     biotools:primaryContact "Manuel Holtgrewe" .
 
 <https://bio.tools/maspectras> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_3071,
@@ -284643,7 +294519,7 @@ Codes for our Medical & Biological Engineering & Computing paper "MaskMitosis: a
     sc:url "http://genome.tugraz.at/maspectras/maspectras_description.shtml" .
 
 <https://bio.tools/masqot-gui> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_3518,
@@ -284661,14 +294537,14 @@ Codes for our Medical & Biological Engineering & Computing paper "MaskMitosis: a
 
 <https://bio.tools/mass> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ],
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_3655" ;
+            sc:name "Peptide identification" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3244" ;
+            sc:name "Mass spectrometry spectra" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -284691,7 +294567,7 @@ Codes for our Medical & Biological Engineering & Computing paper "MaskMitosis: a
     biotools:primaryContact "Mass++ Users Group" .
 
 <https://bio.tools/mass-p> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0078,
@@ -284712,33 +294588,20 @@ Tong Liu and Zheng Wang. MASS: predict the global qualities of individual protei
     sc:name "MASS-p" ;
     sc:url "http://dna.cs.miami.edu/MASS/" .
 
-<https://bio.tools/mass-shootings> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3068 ;
-    sc:citation <https://doi.org/10.1101/2019.12.12.19014738> ;
-    sc:description """high-capacity magazines significantly increase fatality counts, and are becoming more prevalent.
-
-Background: There has been disagreement in the literature regarding whether public mass shootings are becoming more frequent, or more deadly, and whether high-capacity magazine (HCM) weaponry is associated with increased fatalities. Objective: We examined the 85 non-felony- and non-gang-related mass shootings with at least four people shot and killed that occurred in public places between 1995 to 2018 to examine the frequency and deadliness of public mass shootings, as well as the role of HCM weaponry in fatalities. Findings: The per-capita rate of public mass shootings with at least four people killed has not significantly increased since 1995 (Negative Binomial linear regression p=0.20), but public mass shootings with at least six people killed have been increasing by 6.9% per year (p=0.01).
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'mass shootings'""" ;
-    sc:featureList edam:operation_3659,
-        edam:operation_3799 ;
-    sc:name "Temporal trends public mass shootings" ;
-    sc:url "https://mass-shooting-analytics.shinyapps.io/mass_shootings/" .
-
 <https://bio.tools/mass-up> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ],
+            sc:additionalType "http://edamontology.org/data_0944" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Peptide mass fingerprint" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0944" ;
-            sc:name "Peptide mass fingerprint" ;
-            sc:sameAs "http://edamontology.org/data_0944" ] ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3654" ;
+            sc:name "Mass spectrometry spectra" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0944" ;
-            sc:name "Peptide mass fingerprint" ;
-            sc:sameAs "http://edamontology.org/data_0944" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0944" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Peptide mass fingerprint" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_2269,
@@ -284769,30 +294632,30 @@ Background: There has been disagreement in the literature regarding whether publ
 
 <https://bio.tools/massai> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ],
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3651" ;
+            sc:name "Mass spectrometry spectra" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3651" ;
+            sc:name "Mass spectrometry spectra" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ],
+            sc:additionalType "http://edamontology.org/data_1636" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Heat map" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1636" ;
-            sc:name "Heat map" ;
-            sc:sameAs "http://edamontology.org/data_1636" ],
+            sc:additionalType "http://edamontology.org/data_3483" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Spectrum" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0850" ;
-            sc:name "Sequence set" ;
-            sc:sameAs "http://edamontology.org/data_0850" ],
+            sc:additionalType "http://edamontology.org/data_0850" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence set" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3483" ;
-            sc:name "Spectrum" ;
-            sc:sameAs "http://edamontology.org/data_3483" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_3651" ;
+            sc:name "Peptide identification" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -284812,7 +294675,7 @@ Background: There has been disagreement in the literature regarding whether publ
     sc:url "http://www.massai.dk" .
 
 <https://bio.tools/massarray> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -284833,13 +294696,8 @@ Background: There has been disagreement in the literature regarding whether publ
     sc:url "http://bioconductor.org/packages/release/bioc/html/MassArray.html" ;
     biotools:primaryContact "Reid F. Thompson" .
 
-<https://bio.tools/massarray_snp_genotyping> a sc:SoftwareApplication ;
-    sc:description "CD Genomics offers a rapid and accurate custom SNP validation on the MassARRAY MALDI–TOF instrument provided by Agena Bioscience. Our service includes customized SNP panels design, oligo manufacture and pool balancing, iPLEX chemistry running, analysis of genotyping and delivery of genotype report in Excel format. Our workflows can be designed to accommodate both small and large assay requirements. If you have additional requirements or questions, please feel free to contact us." ;
-    sc:name "MassARRAY SNP Genotyping" ;
-    sc:url "https://www.cd-genomics.com/MassARRAY-SNP-Genotyping.html" .
-
 <https://bio.tools/massbank> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_3172 ;
     sc:author "The MassBank Project" ;
@@ -284850,7 +294708,7 @@ Background: There has been disagreement in the literature regarding whether publ
     sc:url "https://massbank.eu/" .
 
 <https://bio.tools/massbase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0780,
@@ -284875,14 +294733,14 @@ Background: There has been disagreement in the literature regarding whether publ
 
 <https://bio.tools/masschroq> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ] ;
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_3654" ;
+            sc:name "Peptide identification" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_3654" ;
+            sc:name "Expression data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -284903,8 +294761,31 @@ Background: There has been disagreement in the literature regarding whether publ
     sc:softwareHelp <http://pappso.inra.fr/bioinfo/masschroq/documentation.php> ;
     sc:url "http://pappso.inra.fr/bioinfo/masschroq/" .
 
+<https://bio.tools/massdatabase> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Library" ;
+    sc:applicationSubCategory edam:topic_0153,
+        edam:topic_0154,
+        edam:topic_0602,
+        edam:topic_3172,
+        edam:topic_3407 ;
+    sc:citation <https://doi.org/10.1093/bioinformatics/btac546>,
+        "pubmed:35944213" ;
+    sc:description "massdatabase is an R package that operates the online public databases and combines with other tools for streamlined compound annotation and pathway enrichment analysis. massDatabase is a flexible, simple, and powerful tool that can be installed on all platforms, allowing the users to leverage all the online public databases for biological function mining." ;
+    sc:featureList edam:operation_2409,
+        edam:operation_3501,
+        edam:operation_3928 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-2.0" ;
+    sc:name "massDatabase" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://massdatabase.tidymass.org/" .
+
 <https://bio.tools/masserstein> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3047,
@@ -284927,14 +294808,14 @@ The tools are distributed as a Python3 package called masserstein. Basic functio
 
 <https://bio.tools/masshunter_file_reader> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3245" ;
+            sc:name "Mass spectrometry spectra" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Mass spectrometry spectra" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -284950,7 +294831,7 @@ The tools are distributed as a Python3 package called masserstein. Basic functio
     sc:url "http://www.quadtechassociates.com/freeware.html" .
 
 <https://bio.tools/massifquant> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -284966,22 +294847,22 @@ The tools are distributed as a Python3 package called masserstein. Basic functio
 
 <https://bio.tools/massir> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Gene expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ] ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_2058" ;
+            sc:name "Gene expression data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ],
+            sc:additionalType "http://edamontology.org/data_1772" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Score" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1772" ;
-            sc:name "Score" ;
-            sc:sameAs "http://edamontology.org/data_1772" ],
+            sc:additionalType "http://edamontology.org/data_1636" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Heat map" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1636" ;
-            sc:name "Heat map" ;
-            sc:sameAs "http://edamontology.org/data_1636" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -285001,8 +294882,30 @@ The tools are distributed as a Python3 package called masserstein. Basic functio
     sc:url "http://bioconductor.org/packages/release/bioc/html/massiR.html" ;
     biotools:primaryContact <http://orcid.org/0000-0003-2388-6046> .
 
+<https://bio.tools/massivegst> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_2269,
+        edam:topic_3068,
+        edam:topic_3308 ;
+    sc:citation <https://doi.org/10.3390/E24050739>,
+        "pmcid:PMC9140214",
+        "pubmed:35626622" ;
+    sc:description "A Mann-Whitney-Wilcoxon Gene-Set Test Tool That Gives Meaning to Gene-Set Enrichment Analysis." ;
+    sc:featureList edam:operation_2436,
+        edam:operation_3435,
+        edam:operation_3928 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "massiveGST" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://cran.r-project.org/web/packages/massiveGST/massiveGST.pdf> ;
+    sc:url "http://www.massivegenesetstest.org/" .
+
 <https://bio.tools/massmap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0637,
@@ -285023,18 +294926,18 @@ The tools are distributed as a Python3 package called masserstein. Basic functio
 
 <https://bio.tools/massmatrix> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1233" ;
-            sc:name "Sequence set (protein)" ;
-            sc:sameAs "http://edamontology.org/data_1233" ],
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3654" ;
+            sc:name "Mass spectrometry spectra" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
+            sc:additionalType "http://edamontology.org/data_1233" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence set (protein)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Peptide identification" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -285057,7 +294960,7 @@ The tools are distributed as a Python3 package called masserstein. Basic functio
     sc:url "http://www.massmatrix.net" .
 
 <https://bio.tools/massnet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0128,
@@ -285075,7 +294978,7 @@ The tools are distributed as a Python3 package called masserstein. Basic functio
     sc:url "http://massnet.kr" .
 
 <https://bio.tools/masspix> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3172,
@@ -285096,7 +294999,7 @@ The tools are distributed as a Python3 package called masserstein. Basic functio
     biotools:primaryContact "Julian L. Griffin" .
 
 <https://bio.tools/masspy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0821,
@@ -285118,7 +295021,7 @@ MASSpy - Mass Action Stoichiometric Simulation in Python.""" ;
     sc:url "https://pypi.org/project/masspy/" .
 
 <https://bio.tools/massshiftfinder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0121,
@@ -285134,7 +295037,7 @@ MASSpy - Mass Action Stoichiometric Simulation in Python.""" ;
     sc:url "http://www.uib.no/en/rg/probe/65790/massshiftfinder" .
 
 <https://bio.tools/massspecapi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_2258 ;
     sc:citation <https://doi.org/10.1007/s13361-011-0265-y> ;
@@ -285149,7 +295052,7 @@ MASSpy - Mass Action Stoichiometric Simulation in Python.""" ;
     sc:url "http://www.chemspider.com/MassSpecAPI.asmx" .
 
 <https://bio.tools/massspecblocks> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3303,
@@ -285175,7 +295078,7 @@ MASSpy - Mass Action Stoichiometric Simulation in Python.""" ;
     sc:url "https://ms.biomed.cas.cz/msb" .
 
 <https://bio.tools/massspecwavelet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -285196,7 +295099,7 @@ MASSpy - Mass Action Stoichiometric Simulation in Python.""" ;
     biotools:primaryContact "Pan Du" .
 
 <https://bio.tools/masstrix> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0602,
@@ -285219,14 +295122,14 @@ MASSpy - Mass Action Stoichiometric Simulation in Python.""" ;
 
 <https://bio.tools/masswiz> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3653" ;
+            sc:name "Mass spectrometry spectra" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Peptide identification" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -285243,14 +295146,14 @@ MASSpy - Mass Action Stoichiometric Simulation in Python.""" ;
 
 <https://bio.tools/masswolf> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3245" ;
+            sc:name "Mass spectrometry spectra" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3654" ;
+            sc:name "Mass spectrometry spectra" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -285263,22 +295166,22 @@ MASSpy - Mass Action Stoichiometric Simulation in Python.""" ;
 
 <https://bio.tools/massxpert> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0977" ;
-            sc:name "Tool identifier" ;
-            sc:sameAs "http://edamontology.org/data_0977" ],
+            sc:additionalType "http://edamontology.org/data_0977" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Tool identifier" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Protein sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ],
+            sc:additionalType "http://edamontology.org/data_0977" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Tool identifier" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0977" ;
-            sc:name "Tool identifier" ;
-            sc:sameAs "http://edamontology.org/data_0977" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Protein sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0123,
@@ -285303,10 +295206,10 @@ MASSpy - Mass Action Stoichiometric Simulation in Python.""" ;
 
 <https://bio.tools/massypup> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3654" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -285319,7 +295222,7 @@ MASSpy - Mass Action Stoichiometric Simulation in Python.""" ;
     sc:url "http://www.bioprocess.org/massypup" .
 
 <https://bio.tools/massytools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3071,
@@ -285334,7 +295237,7 @@ MASSpy - Mass Action Stoichiometric Simulation in Python.""" ;
     sc:url "https://github.com/Tarskin/MassyTools" .
 
 <https://bio.tools/mast> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3308 ;
@@ -285353,14 +295256,14 @@ MASSpy - Mass Action Stoichiometric Simulation in Python.""" ;
 
 <https://bio.tools/master2pgsnp> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0199,
@@ -285382,7 +295285,7 @@ MASSpy - Mass Action Stoichiometric Simulation in Python.""" ;
     biotools:primaryContact "Galaxy Support Team" .
 
 <https://bio.tools/masterVar2VCF> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622 ;
     sc:description "masterVar2VCF converts a Complete Genomics masterVar file to a file in VCF v4.1 format." ;
@@ -285395,7 +295298,7 @@ MASSpy - Mass Action Stoichiometric Simulation in Python.""" ;
     sc:url "http://www.completegenomics.com/analysis-tools/toolrepository/masterVarformattoVCFformatfileconverter/" .
 
 <https://bio.tools/masterpath> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0602,
@@ -285417,18 +295320,16 @@ MasterPATH is an exploratory network analysis method that employs the shortest p
 
 <https://bio.tools/mastr> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3495" ;
-            sc:name "RNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3495" ] ;
+            sc:additionalType "http://edamontology.org/data_3495" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "RNA sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1916" ;
-            sc:name "Alignment" ;
-            sc:sameAs "http://edamontology.org/data_1916" ],
+            sc:additionalType "http://edamontology.org/data_1916" ;
+            sc:name "Alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0880" ;
-            sc:name "RNA secondary structure" ;
-            sc:sameAs "http://edamontology.org/data_0880" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0880" ;
+            sc:name "RNA secondary structure" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
@@ -285447,7 +295348,7 @@ MasterPATH is an exploratory network analysis method that employs the shortest p
     biotools:primaryContact "Stinus Lindgreen" .
 
 <https://bio.tools/masttreedist> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_3293,
@@ -285466,7 +295367,7 @@ MasterPATH is an exploratory network analysis method that employs the shortest p
         "Yongji Li" .
 
 <https://bio.tools/masurca> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0196,
@@ -285482,7 +295383,7 @@ MasterPATH is an exploratory network analysis method that employs the shortest p
         "Guillaume Marçais" .
 
 <https://bio.tools/mat2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3308,
@@ -285500,7 +295401,7 @@ MasterPATH is an exploratory network analysis method that employs the shortest p
         "Xing-Ming Zhao" .
 
 <https://bio.tools/matTFA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3172,
@@ -285519,7 +295420,7 @@ MasterPATH is an exploratory network analysis method that employs the shortest p
     biotools:primaryContact "Laboratory of Computational Systems Biotechnology" .
 
 <https://bio.tools/matam> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3174,
@@ -285535,7 +295436,7 @@ MasterPATH is an exploratory network analysis method that employs the shortest p
     sc:url "https://github.com/bonsai-team/matam" .
 
 <https://bio.tools/matapax> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0780,
@@ -285552,7 +295453,7 @@ MasterPATH is an exploratory network analysis method that employs the shortest p
     sc:url "http://matapax.mpimp-golm.mpg.de/" .
 
 <https://bio.tools/matataki> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3170 ;
@@ -285569,7 +295470,7 @@ MasterPATH is an exploratory network analysis method that employs the shortest p
     biotools:primaryContact "Kengo Kinoshita" .
 
 <https://bio.tools/matav3> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0099,
@@ -285585,7 +295486,7 @@ MasterPATH is an exploratory network analysis method that employs the shortest p
     biotools:primaryContact "Paul Gottlieb" .
 
 <https://bio.tools/match> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0654,
@@ -285607,7 +295508,7 @@ MasterPATH is an exploratory network analysis method that employs the shortest p
     biotools:primaryContact "Webmaster" .
 
 <https://bio.tools/match_box> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0625,
@@ -285630,7 +295531,7 @@ MasterPATH is an exploratory network analysis method that employs the shortest p
     sc:url "https://seqr.broadinstitute.org/matchmaker/matchbox" .
 
 <https://bio.tools/matcha> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0632,
         edam:topic_3169,
@@ -285650,7 +295551,7 @@ This is the implementation of the algorithm MATCHA for analyzing multi-way chrom
     sc:url "https://github.com/ma-compbio/MATCHA" .
 
 <https://bio.tools/matchathon> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_3344 ;
     sc:citation <https://doi.org/10.1101/2020.11.06.371526> ;
@@ -285668,22 +295569,22 @@ To help students find faculty members with mutual research interests, we use thi
 
 <https://bio.tools/matchbox> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Gene expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ] ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_2058" ;
+            sc:name "Gene expression data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ],
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Plot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ],
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Gene expression data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Gene expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -285707,22 +295608,18 @@ To help students find faculty members with mutual research interests, we use thi
 
 <https://bio.tools/matcher> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ],
+            sc:additionalType "http://edamontology.org/data_0874" ;
+            sc:name "Comparison matrix" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0874" ;
-            sc:name "Comparison matrix" ;
-            sc:sameAs "http://edamontology.org/data_0874" ],
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1381" ;
-            sc:name "Sequence alignment (pair)" ;
-            sc:sameAs "http://edamontology.org/data_1381" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1381" ;
+            sc:name "Sequence alignment (pair)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0097 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -285752,7 +295649,7 @@ To help students find faculty members with mutual research interests, we use thi
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/matcher.html" .
 
 <https://bio.tools/matcher-api-ebi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1016/0022-2836(87)90478-5> ;
@@ -285768,23 +295665,22 @@ To help students find faculty members with mutual research interests, we use thi
 
 <https://bio.tools/matcher-ebi> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1381" ;
-            sc:name "Sequence alignment (pair)" ;
-            sc:sameAs "http://edamontology.org/data_1381" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1381" ;
+            sc:name "Sequence alignment (pair)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:author "EMBOSS",
-        "Web Production" ;
-    sc:citation <https://doi.org/10.1016/0196-8858(91)90017-D> ;
+        "Job Dispatcher" ;
+    sc:citation <https://doi.org/10.1016/0196-8858(91)90017-D>,
+        <https://doi.org/10.1093/nar/gkac240> ;
     sc:description "Waterman-Eggert local alignment of two sequences." ;
     sc:featureList edam:operation_0491,
         edam:operation_0495 ;
-    sc:name "matcher (EBI)" ;
+    sc:name "Matcher (EBI)" ;
     sc:operatingSystem "Linux",
         "Mac",
         "Windows" ;
@@ -285793,10 +295689,10 @@ To help students find faculty members with mutual research interests, we use thi
         <http://www.ebi.ac.uk/about/terms-of-use> ;
     sc:softwareVersion "1" ;
     sc:url "http://www.ebi.ac.uk/Tools/psa/emboss_matcher/" ;
-    biotools:primaryContact "Web Production" .
+    biotools:primaryContact "Job Dispatcher Team" .
 
 <https://bio.tools/matcher_ws_husar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1016/0196-8858(91)90017-D> ;
@@ -285808,7 +295704,7 @@ To help students find faculty members with mutual research interests, we use thi
     sc:url "http://genius.embnet.dkfz-heidelberg.de/menu/hobit/embdoc/matcher.html" .
 
 <https://bio.tools/matchmaker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0602,
@@ -285826,7 +295722,7 @@ Drug combination therapies have been a viable strategy for the treatment of comp
     sc:url "https://github.com/tastanlab/matchmaker" .
 
 <https://bio.tools/matchmaker_exchange> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
@@ -285851,7 +295747,7 @@ Drug combination therapies have been a viable strategy for the treatment of comp
     sc:url "http://www.matchmakerexchange.org" .
 
 <https://bio.tools/matchminer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0203,
@@ -285873,7 +295769,7 @@ Drug combination therapies have been a viable strategy for the treatment of comp
     biotools:primaryContact "MatchMiner Support" .
 
 <https://bio.tools/matchmixer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3170,
@@ -285890,7 +295786,7 @@ MOTIVATION:Combining gene expression (GE) profiles generated from different plat
     sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31904810" .
 
 <https://bio.tools/matchms> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3172 ;
     sc:description "Tool to import, process, clean, and compare mass spectrometry data." ;
@@ -285901,7 +295797,7 @@ MOTIVATION:Combining gene expression (GE) profiles generated from different plat
     sc:url "https://github.com/matchms/matchms" .
 
 <https://bio.tools/matchseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0203,
@@ -285923,7 +295819,7 @@ Each script includes a help menu with further instructions and available options
     sc:url "https://github.com/mpieva/matchseq" .
 
 <https://bio.tools/matcol> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3382 ;
@@ -285938,7 +295834,7 @@ Each script includes a help menu with further instructions and available options
     biotools:primaryContact "Support" .
 
 <https://bio.tools/matfr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3474,
@@ -285955,7 +295851,7 @@ The matFR toolbox has already integrated 42 methods. Among them, 12 methods are
     sc:url "http://github.com/NicoYuCN/matFR" .
 
 <https://bio.tools/mathdamp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0154,
@@ -285973,7 +295869,7 @@ The matFR toolbox has already integrated 42 methods. Among them, 12 methods are
     biotools:primaryContact "Martin Robert" .
 
 <https://bio.tools/mathfeature> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0102,
@@ -285995,7 +295891,7 @@ Machine learning algorithms have been very successfully applied to extract new a
     sc:url "https://bonidia.github.io/MathFeature/" .
 
 <https://bio.tools/matisse> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_2229,
@@ -286015,7 +295911,7 @@ Machine learning algorithms have been very successfully applied to extract new a
     biotools:primaryContact <https://orcid.org/0000-0002-5060-2603> .
 
 <https://bio.tools/matlab> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:description "MATLAB is a general use development environment and scientific computing language." ;
     sc:isAccessibleForFree false ;
@@ -286027,7 +295923,7 @@ Machine learning algorithms have been very successfully applied to extract new a
     sc:url "https://www.mathworks.com/products/matlab.html" .
 
 <https://bio.tools/matlab-biomech-functions> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3318,
@@ -286043,7 +295939,7 @@ Machine learning algorithms have been very successfully applied to extract new a
     biotools:primaryContact "cedric MORIO" .
 
 <https://bio.tools/matlab-panel-data-toolbox> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:citation <https://doi.org/10.18637/jss.v076.i06> ;
@@ -286058,7 +295954,7 @@ Machine learning algorithms have been very successfully applied to extract new a
     biotools:primaryContact "Javier Barbero Jiménez" .
 
 <https://bio.tools/matnet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3382,
         edam:topic_3474 ;
@@ -286078,8 +295974,30 @@ This is a PyTorch implementation of our MATNet for unsupervised video object seg
     sc:name "MATNet" ;
     sc:url "https://github.com/tfzhou/MATNet" .
 
+<https://bio.tools/matoptimize> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0084,
+        edam:topic_0194,
+        edam:topic_0199 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC401>,
+        "pmcid:PMC9344837",
+        "pubmed:35731204" ;
+    sc:description "matOptimize is a program to rapidly and effectively optimize a mutation-annotated tree (MAT) for parsimony using subtree pruning and regrafting (SPR) moves within a user-defined radius." ;
+    sc:featureList edam:operation_0323,
+        edam:operation_0326,
+        edam:operation_0558,
+        edam:operation_0567 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "matOptimize" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/yceh/matOptimize-experiments" .
+
 <https://bio.tools/matquantify> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3321,
         edam:topic_3382 ;
@@ -286095,7 +296013,7 @@ This is a PyTorch implementation of our MATNet for unsupervised video object seg
     biotools:primaryContact "Matloob Khushi" .
 
 <https://bio.tools/matras> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0130,
@@ -286118,7 +296036,7 @@ This is a PyTorch implementation of our MATNet for unsupervised video object seg
     biotools:primaryContact "MATRAS Support" .
 
 <https://bio.tools/matrisome> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0601,
@@ -286139,22 +296057,20 @@ The extracellular matrix (ECM) is an assembly of hundreds of proteins that struc
 
 <https://bio.tools/matrix-clustering> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1361" ;
-            sc:name "Position frequency matrix" ;
-            sc:sameAs "http://edamontology.org/data_1361" ] ;
+            sc:additionalType "http://edamontology.org/data_1361" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Position frequency matrix" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1361" ;
-            sc:name "Position frequency matrix" ;
-            sc:sameAs "http://edamontology.org/data_1361" ],
+            sc:additionalType "http://edamontology.org/data_1246" ;
+            sc:name "Sequence cluster (nucleic acid)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ],
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:name "Report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1246" ;
-            sc:name "Sequence cluster (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1246" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1361" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Position frequency matrix" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_3125,
@@ -286179,7 +296095,7 @@ The extracellular matrix (ECM) is an assembly of hundreds of proteins that struc
         "Morgane Thomas-Chollier" .
 
 <https://bio.tools/matrix2png> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_3053,
@@ -286198,7 +296114,7 @@ The extracellular matrix (ECM) is an assembly of hundreds of proteins that struc
     biotools:primaryContact "Paul Pavlidis" .
 
 <https://bio.tools/matrix_eqtl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2885,
         edam:topic_3053 ;
@@ -286214,7 +296130,7 @@ The extracellular matrix (ECM) is an assembly of hundreds of proteins that struc
     biotools:primaryContact "Andrey A. Shabalin" .
 
 <https://bio.tools/matrixcgh> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3053 ;
     sc:description "MatrixCGH is an extensible software framework for array CGH processing" ;
@@ -286228,14 +296144,12 @@ The extracellular matrix (ECM) is an assembly of hundreds of proteins that struc
 
 <https://bio.tools/matrixclust> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2855" ;
-            sc:name "Distance matrix" ;
-            sc:sameAs "http://edamontology.org/data_2855" ] ;
+            sc:additionalType "http://edamontology.org/data_2855" ;
+            sc:name "Distance matrix" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1235" ;
-            sc:name "Sequence cluster" ;
-            sc:sameAs "http://edamontology.org/data_1235" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1235" ;
+            sc:name "Sequence cluster" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3307 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btm562>,
@@ -286252,7 +296166,7 @@ The extracellular matrix (ECM) is an assembly of hundreds of proteins that struc
     biotools:primaryContact <http://orcid.org/0000-0003-4327-3730> .
 
 <https://bio.tools/matrixdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0128,
@@ -286278,7 +296192,7 @@ The extracellular matrix (ECM) is an assembly of hundreds of proteins that struc
     biotools:primaryContact <https://orcid.org/0000-0001-9263-1851> .
 
 <https://bio.tools/matrixepistasis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0625,
@@ -286296,7 +296210,7 @@ The extracellular matrix (ECM) is an assembly of hundreds of proteins that struc
     biotools:primaryContact "Shijia Zhu" .
 
 <https://bio.tools/matrixmatchmaker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078 ;
     sc:citation "pubmed:19696150" ;
@@ -286308,7 +296222,7 @@ The extracellular matrix (ECM) is an assembly of hundreds of proteins that struc
     sc:url "http://www.uhnresearch.ca/labs/tillier/software.htm#8" .
 
 <https://bio.tools/matrixqcvis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0769,
@@ -286327,7 +296241,7 @@ The extracellular matrix (ECM) is an assembly of hundreds of proteins that struc
     sc:url "https://www.bioconductor.org/packages/release/bioc/html/MatrixQCvis.html" .
 
 <https://bio.tools/matrixrider> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3534 ;
@@ -286345,7 +296259,7 @@ The extracellular matrix (ECM) is an assembly of hundreds of proteins that struc
     biotools:primaryContact "Elena Grassi" .
 
 <https://bio.tools/matroid-intersection-algorithm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3315 ;
     sc:description "Matroid intersection algorithm, i.e., find the maximum cardinality intersection of two matroids" ;
@@ -286359,7 +296273,7 @@ The extracellular matrix (ECM) is an assembly of hundreds of proteins that struc
     biotools:primaryContact "Yuan Zhang" .
 
 <https://bio.tools/mats> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3277,
@@ -286376,7 +296290,7 @@ An efficient version of MATS that was used to perform the experiments in the art
     sc:url "https://github.com/timo-verstraeten/mats-experiments" .
 
 <https://bio.tools/matsas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3077,
         edam:topic_3448,
@@ -286391,7 +296305,7 @@ An efficient version of MATS that was used to perform the experiments in the art
     biotools:primaryContact <https://orcid.org/0000-0002-5608-8115> .
 
 <https://bio.tools/matscholar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0218,
@@ -286407,7 +296321,7 @@ An efficient version of MATS that was used to perform the experiments in the art
     sc:url "http://matscholar.com" .
 
 <https://bio.tools/matt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2814 ;
     sc:citation <https://doi.org/10.1371/journal.pcbi.0040010> ;
@@ -286422,7 +296336,7 @@ An efficient version of MATS that was used to perform the experiments in the art
     sc:url "http://matt.cs.tufts.edu/" .
 
 <https://bio.tools/mattbench> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_1317,
         edam:topic_2814 ;
@@ -286437,7 +296351,7 @@ An efficient version of MATS that was used to perform the experiments in the art
     sc:url "http://bcb.cs.tufts.edu/mattbench/Mattbench.html" .
 
 <https://bio.tools/matter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -286457,7 +296371,7 @@ An efficient version of MATS that was used to perform the experiments in the art
     biotools:primaryContact "Kylie A. Bemis" .
 
 <https://bio.tools/maturebayes> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0659 ;
@@ -286473,7 +296387,7 @@ An efficient version of MATS that was used to perform the experiments in the art
     biotools:primaryContact "Panayiota Poirazi" .
 
 <https://bio.tools/maude> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2229,
@@ -286493,8 +296407,25 @@ MAUDE is an R package for finding differences in means of normally distributed (
     sc:name "MAUDE" ;
     sc:url "https://github.com/Carldeboer/MAUDE" .
 
+<https://bio.tools/maude_database> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_2815,
+        edam:topic_3378,
+        edam:topic_3489 ;
+    sc:citation <https://doi.org/10.1097/DSS.0000000000003501>,
+        "pubmed:35778250" ;
+    sc:description "A Cross-sectional Analysis of the US Food and Drug Administration Manufacturer and User Facility Device Experience Database." ;
+    sc:featureList edam:operation_2421 ;
+    sc:isAccessibleForFree true ;
+    sc:name "MAUDE" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://www.accessdata.fda.gov/scripts/cdrh/cfdocs/cfmaude/search.cfm" .
+
 <https://bio.tools/maui> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0625,
@@ -286515,7 +296446,7 @@ MAUDE is an R package for finding differences in means of normally distributed (
         "Leeat Keren" .
 
 <https://bio.tools/mauve> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3308 ;
@@ -286534,7 +296465,7 @@ MAUDE is an R package for finding differences in means of normally distributed (
     biotools:primaryContact "Aaron Darling" .
 
 <https://bio.tools/mave-nn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0625,
@@ -286550,7 +296481,7 @@ learning genotype-phenotype maps from multiplex assays of variant effect — mav
     sc:url "https://mavenn.readthedocs.io" .
 
 <https://bio.tools/mavequest> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0634,
@@ -286574,7 +296505,7 @@ MaveQuest is an online database for querying literature-curated functional assay
     sc:url "https://mavequest.varianteffect.org/" .
 
 <https://bio.tools/maveregistry> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0154,
@@ -286590,7 +296521,7 @@ MaveRegistry is a collaborative resource for sharing progress on Multiplexed Ass
     sc:url "https://registry.varianteffect.org" .
 
 <https://bio.tools/mavid> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0084,
@@ -286607,7 +296538,7 @@ MaveRegistry is a collaborative resource for sharing progress on Multiplexed Ass
     sc:url "http://pachterlab.github.io/software.html" .
 
 <https://bio.tools/mavisto> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_2259 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/bti556> ;
@@ -286625,7 +296556,7 @@ MaveRegistry is a collaborative resource for sharing progress on Multiplexed Ass
     sc:url "http://mavisto.ipk-gatersleben.de/" .
 
 <https://bio.tools/maxalign> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0084,
@@ -286650,7 +296581,7 @@ MaveRegistry is a collaborative resource for sharing progress on Multiplexed Ass
         "Technical problems: Peter Wad Sackett" .
 
 <https://bio.tools/maxbin> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3174,
@@ -286666,7 +296597,7 @@ MaveRegistry is a collaborative resource for sharing progress on Multiplexed Ass
     biotools:primaryContact "Yu-Wei Wu" .
 
 <https://bio.tools/maxcluster> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_2814 ;
@@ -286683,7 +296614,7 @@ MaveRegistry is a collaborative resource for sharing progress on Multiplexed Ass
     sc:url "http://www.sbg.bio.ic.ac.uk/~maxcluster" .
 
 <https://bio.tools/maxcontrastprojection> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3382 ;
     sc:description "A problem when recording 3D fluorescent microscopy images is how to properly present these results in 2D. Maximum intensity projections are a popular method to determine the focal plane of each pixel in the image. The problem with this approach, however, is that out-of-focus elements will still be visible, making edges and fine structures difficult to detect. This package aims to resolve this problem." ;
@@ -286700,7 +296631,7 @@ MaveRegistry is a collaborative resource for sharing progress on Multiplexed Ass
     biotools:primaryContact "Jan Sauer" .
 
 <https://bio.tools/maxcounts> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1186/1471-2105-15-S1-S7> ;
@@ -286718,7 +296649,7 @@ MaveRegistry is a collaborative resource for sharing progress on Multiplexed Ass
     biotools:primaryContact "Francesca Finotello" .
 
 <https://bio.tools/maxent-ppi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0128,
@@ -286735,7 +296666,7 @@ MaveRegistry is a collaborative resource for sharing progress on Multiplexed Ass
     biotools:primaryContact "Sean B Holden" .
 
 <https://bio.tools/maxflow> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080 ;
@@ -286750,7 +296681,7 @@ MaveRegistry is a collaborative resource for sharing progress on Multiplexed Ass
     sc:url "http://ekhidna.biocenter.helsinki.fi/gtg/start" .
 
 <https://bio.tools/maxhic> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_2885,
@@ -286768,7 +296699,7 @@ MaxHiC is a background correcting model for General and Capture Hi-C experiments
     sc:url "https://github.com/Rassa-Gvm/MaxHiC" .
 
 <https://bio.tools/maxic-q> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3678 ;
@@ -286787,7 +296718,7 @@ MaxHiC is a background correcting model for General and Capture Hi-C experiments
     biotools:primaryContact "Systems Proteomics Laboratory, Institute of Information Science, Academia Sinica" .
 
 <https://bio.tools/maxillary-sinus-quantification> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_3384 ;
     sc:citation <https://doi.org/10.1371/journal.pone.0190770> ;
@@ -286802,7 +296733,7 @@ MaxHiC is a background correcting model for General and Capture Hi-C experiments
     biotools:primaryContact "Diana Rodrigues de Pina" .
 
 <https://bio.tools/maximum-intensity-projection> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -286822,7 +296753,7 @@ MaxHiC is a background correcting model for General and Capture Hi-C experiments
     biotools:primaryContact "Job" .
 
 <https://bio.tools/maximus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0622 ;
     sc:description "Hybrid reference and de novo assembly pipeline" ;
@@ -286835,7 +296766,7 @@ MaxHiC is a background correcting model for General and Capture Hi-C experiments
         "Allen Yu" .
 
 <https://bio.tools/maxlink> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2259,
@@ -286852,7 +296783,7 @@ MaxHiC is a background correcting model for General and Capture Hi-C experiments
     biotools:primaryContact "Dimitri Guala" .
 
 <https://bio.tools/maxmod> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_2275,
@@ -286867,7 +296798,7 @@ MaxHiC is a background correcting model for General and Capture Hi-C experiments
     biotools:primaryContact "Panda PK" .
 
 <https://bio.tools/maxocc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_1317,
         edam:topic_2275 ;
@@ -286886,18 +296817,18 @@ MaxHiC is a background correcting model for General and Capture Hi-C experiments
 
 <https://bio.tools/maxquant> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ] ;
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_3620" ;
+            sc:name "Peptide identification" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ],
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3603" ;
+            sc:name "Plot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Expression data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_2269,
@@ -286923,7 +296854,7 @@ MaxHiC is a background correcting model for General and Capture Hi-C experiments
     sc:url "http://www.maxquant.org/" .
 
 <https://bio.tools/maxreport> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0121,
@@ -286942,7 +296873,7 @@ MaxHiC is a background correcting model for General and Capture Hi-C experiments
     biotools:primaryContact "Tao Zhou" .
 
 <https://bio.tools/maxsnippetmodel> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3400,
         edam:topic_3474 ;
@@ -286959,14 +296890,12 @@ MaxHiC is a background correcting model for General and Capture Hi-C experiments
 
 <https://bio.tools/maxsprout> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1470" ;
-            sc:name "C-alpha trace" ;
-            sc:sameAs "http://edamontology.org/data_1470" ] ;
+            sc:additionalType "http://edamontology.org/data_1470" ;
+            sc:name "C-alpha trace" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:name "Protein structure" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2275,
         edam:topic_2814 ;
@@ -286988,7 +296917,7 @@ MaxHiC is a background correcting model for General and Capture Hi-C experiments
     biotools:primaryContact "Web Production" .
 
 <https://bio.tools/mayday> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_3170 ;
     sc:citation "pubmed:20375461" ;
@@ -287004,26 +296933,26 @@ MaxHiC is a background correcting model for General and Capture Hi-C experiments
 
 <https://bio.tools/mayu> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ],
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_3655" ;
+            sc:name "Peptide identification" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ],
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_3655" ;
+            sc:name "Peptide identification" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ] ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ],
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3508" ;
+            sc:name "Plot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Peptide identification" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_2269,
@@ -287040,7 +296969,7 @@ MaxHiC is a background correcting model for General and Capture Hi-C experiments
     sc:url "http://proteomics.ethz.ch/muellelu/web/LukasReiter/Mayu/" .
 
 <https://bio.tools/mb-gan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3174 ;
     sc:citation <https://doi.org/10.1101/863977> ;
@@ -287050,7 +296979,7 @@ MaxHiC is a background correcting model for General and Capture Hi-C experiments
     sc:url "https://github.com/zhanxw/MB-GAN" .
 
 <https://bio.tools/mba> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0593,
@@ -287067,7 +296996,7 @@ MaxHiC is a background correcting model for General and Capture Hi-C experiments
     biotools:primaryContact "Olga Vitek Lab" .
 
 <https://bio.tools/mbamethyl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0204,
@@ -287087,7 +297016,7 @@ MaxHiC is a background correcting model for General and Capture Hi-C experiments
     biotools:primaryContact "Tao Wang" .
 
 <https://bio.tools/mbased> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -287106,7 +297035,7 @@ MaxHiC is a background correcting model for General and Capture Hi-C experiments
     biotools:primaryContact "Oleg Mayba" .
 
 <https://bio.tools/mbasr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0769,
@@ -287123,7 +297052,7 @@ MrBayes Ancestral States with R. Contribute to stevenheritage/MBASR development
     sc:url "https://github.com/stevenheritage/MBASR/releases" .
 
 <https://bio.tools/mbbc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3174,
@@ -287143,7 +297072,7 @@ MrBayes Ancestral States with R. Contribute to stevenheritage/MBASR development
         "Ying Wang" .
 
 <https://bio.tools/mbcb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3168,
@@ -287161,8 +297090,53 @@ MrBayes Ancestral States with R. Contribute to stevenheritage/MBASR development
     sc:url "http://bioconductor.org/packages/release/bioc/html/MBCB.html" ;
     biotools:primaryContact "Jeff Allen" .
 
+<https://bio.tools/mbcdeg> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_2269,
+        edam:topic_3170 ;
+    sc:citation <https://doi.org/10.1186/S12859-021-04438-4>,
+        "pmcid:PMC8527798",
+        "pubmed:34670485" ;
+    sc:description "Differential expression analysis using a model-based gene clustering algorithm for RNA-seq data." ;
+    sc:featureList edam:operation_0313,
+        edam:operation_3223,
+        edam:operation_3680 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "MBCdeg" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/takosa/MBCdeg-paper" .
+
+<https://bio.tools/mbdenoise> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0084,
+        edam:topic_2269,
+        edam:topic_3170,
+        edam:topic_3174,
+        edam:topic_3697 ;
+    sc:citation <https://doi.org/10.1186/S13059-022-02657-3>,
+        "pmcid:PMC9011970",
+        "pubmed:35422001" ;
+    sc:description "Microbiome data denoising using zero-inflated probabilistic principal components analysis." ;
+    sc:featureList edam:operation_3435,
+        edam:operation_3891,
+        edam:operation_3935,
+        edam:operation_3960 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "mbDenoise" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/YanyZeng/mbDenoise" .
+
 <https://bio.tools/mbend> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_2269 ;
@@ -287176,7 +297150,7 @@ MrBayes Ancestral States with R. Contribute to stevenheritage/MBASR development
     sc:url "https://cran.r-project.org/package=mbend" .
 
 <https://bio.tools/mbg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0196,
@@ -287192,8 +297166,27 @@ Minimizer based sparse de Bruijn Graph constructor. Homopolymer compress input s
     sc:name "MBG" ;
     sc:url "https://anaconda.org/bioconda/mbg" .
 
+<https://bio.tools/mbgapp> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_2269,
+        edam:topic_3305,
+        edam:topic_3344 ;
+    sc:citation <https://doi.org/10.1371/JOURNAL.PONE.0262145>,
+        "pmcid:PMC8719748",
+        "pubmed:34972193" ;
+    sc:description "A Shiny application for teaching model-based geostatistics to population health scientists." ;
+    sc:featureList edam:operation_3435 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "MBGapp" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://olatunjijohnson.shinyapps.io/mbgapp/" .
+
 <https://bio.tools/mbgc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0622 ;
@@ -287205,7 +297198,7 @@ Multiple Bacteria Genome Compressor (MBGC) is a tool for compressing genomes in
     sc:url "http://github.com/kowallus/mbgc" .
 
 <https://bio.tools/mbgd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0622,
@@ -287224,7 +297217,7 @@ Multiple Bacteria Genome Compressor (MBGC) is a tool for compressing genomes in
     biotools:primaryContact "Ikuo Uchiyama" .
 
 <https://bio.tools/mbinfo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_3071 ;
@@ -287237,7 +297230,7 @@ Multiple Bacteria Genome Compressor (MBGC) is a tool for compressing genomes in
     sc:url "https://github.com/MICommunity/psicquic" .
 
 <https://bio.tools/mbkmeans> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3170,
@@ -287259,14 +297252,14 @@ Clustering, GeneExpression, RNASeq, Sequencing, SingleCell, Software, Transcript
 
 <https://bio.tools/mblastall> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0857" ;
-            sc:name "Sequence search results" ;
-            sc:sameAs "http://edamontology.org/data_0857" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0857" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Sequence search results" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:citation <https://doi.org/10.1016/s0022-2836(05)80360-2>,
@@ -287281,24 +297274,47 @@ Clustering, GeneExpression, RNASeq, Sequencing, SingleCell, Software, Transcript
     sc:url "https://bioweb.pasteur.fr/packages/pack@ptools@0.99d" ;
     biotools:primaryContact "Galaxy Support Team" .
 
+<https://bio.tools/mbodymap> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0219,
+        edam:topic_0634,
+        edam:topic_3063,
+        edam:topic_3174,
+        edam:topic_3697 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAB973>,
+        "pmcid:PMC8728210",
+        "pubmed:34718713" ;
+    sc:description "A curated database for microbes across human body and their associations with health and diseases." ;
+    sc:featureList edam:operation_0224,
+        edam:operation_0362,
+        edam:operation_3461 ;
+    sc:isAccessibleForFree true ;
+    sc:name "mBodyMap" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://mbodymap.microbiome.cloud" .
+
 <https://bio.tools/mbpcr> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1276" ;
-            sc:name "Nucleic acid features" ;
-            sc:sameAs "http://edamontology.org/data_1276" ],
+            sc:additionalType "http://edamontology.org/data_0928" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Gene expression profile" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0928" ;
-            sc:name "Gene expression profile" ;
-            sc:sameAs "http://edamontology.org/data_0928" ] ;
+            sc:additionalType "http://edamontology.org/data_1276" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Nucleic acid features" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ],
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Plot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1276" ;
-            sc:name "Nucleic acid features" ;
-            sc:sameAs "http://edamontology.org/data_1276" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1276" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Nucleic acid features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -287317,7 +297333,7 @@ Clustering, GeneExpression, RNASeq, Sequencing, SingleCell, Software, Transcript
     biotools:primaryContact "P.M.V. Rancoita" .
 
 <https://bio.tools/mbppred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0820,
@@ -287333,7 +297349,7 @@ Clustering, GeneExpression, RNASeq, Sequencing, SingleCell, Software, Transcript
     sc:url "http://aias.biol.uoa.gr/MBPpred/" .
 
 <https://bio.tools/mbr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0632,
         edam:topic_3518 ;
@@ -287350,7 +297366,7 @@ Clustering, GeneExpression, RNASeq, Sequencing, SingleCell, Software, Transcript
     sc:url "http://liulab.dfci.harvard.edu/Software/MBR/MBR.htm.html" .
 
 <https://bio.tools/mbrole> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3172 ;
@@ -287366,7 +297382,7 @@ Clustering, GeneExpression, RNASeq, Sequencing, SingleCell, Software, Transcript
     sc:url "http://csbg.cnb.csic.es/mbrole2/" .
 
 <https://bio.tools/mbs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_2885,
@@ -287383,7 +297399,7 @@ Clustering, GeneExpression, RNASeq, Sequencing, SingleCell, Software, Transcript
     biotools:primaryContact "Kosuke M Teshima" .
 
 <https://bio.tools/mbstar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0659,
@@ -287399,7 +297415,7 @@ Clustering, GeneExpression, RNASeq, Sequencing, SingleCell, Software, Transcript
     sc:url "http://www.isical.ac.in/~bioinfo_miu/MBStar30.htm" .
 
 <https://bio.tools/mbttest> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3308 ;
@@ -287417,7 +297433,7 @@ Clustering, GeneExpression, RNASeq, Sequencing, SingleCell, Software, Transcript
     biotools:primaryContact "Yuan-De Tan" .
 
 <https://bio.tools/mbv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3168,
@@ -287435,18 +297451,18 @@ Clustering, GeneExpression, RNASeq, Sequencing, SingleCell, Software, Transcript
 
 <https://bio.tools/mbwa_wrapper> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1932" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
+            sc:name "Sequence trace" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0622,
@@ -287466,7 +297482,7 @@ Clustering, GeneExpression, RNASeq, Sequencing, SingleCell, Software, Transcript
     biotools:primaryContact "Galaxy Support Team" .
 
 <https://bio.tools/mc-simulation-photon-tissue> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3374 ;
     sc:description "A MATLAB implementation of Monte Carlo simulation for photon migration inside tissue." ;
@@ -287483,7 +297499,7 @@ Clustering, GeneExpression, RNASeq, Sequencing, SingleCell, Software, Transcript
     biotools:primaryContact "Bo Qiang" .
 
 <https://bio.tools/mc3> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2259,
@@ -287498,7 +297514,7 @@ Clustering, GeneExpression, RNASeq, Sequencing, SingleCell, Software, Transcript
     biotools:primaryContact "Soha Hassoun" .
 
 <https://bio.tools/mcagui> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3053,
@@ -287519,7 +297535,7 @@ Clustering, GeneExpression, RNASeq, Sequencing, SingleCell, Software, Transcript
     biotools:primaryContact "Wade K. Copeland" .
 
 <https://bio.tools/mcbiclust> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2269,
@@ -287541,7 +297557,7 @@ Clustering, GeneExpression, RNASeq, Sequencing, SingleCell, Software, Transcript
     biotools:primaryContact "Robert Bentham" .
 
 <https://bio.tools/mcc-sp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -287561,8 +297577,71 @@ ADnet: An integration powerful method(MCC-SP) for Identification of Causal Pathw
     sc:name "MCC-SP" ;
     sc:url "https://github.com/zhuyuchen95/ADnet" .
 
+<https://bio.tools/mccdti> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workbench" ;
+    sc:applicationSubCategory edam:topic_0128,
+        edam:topic_0154,
+        edam:topic_3336,
+        edam:topic_3373 ;
+    sc:citation <https://doi.org/10.1093/BIB/BBAC059>,
+        "pubmed:35262678" ;
+    sc:description "A framework MccDTI for DTIs prediction by integrating heterogeneous information of drug and target. MccDTI adopts multiview network embedding to integrate heterogeneous information." ;
+    sc:featureList edam:operation_3927 ;
+    sc:license "Not licensed" ;
+    sc:name "MccDTI" ;
+    sc:operatingSystem "Linux" ;
+    sc:url "https://github.com/ShangCS/MccDTI" .
+
+<https://bio.tools/mccl> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0749,
+        edam:topic_3315,
+        edam:topic_3382 ;
+    sc:citation <https://doi.org/10.1117/1.JBO.27.8.083005>,
+        "pmcid:PMC9005200",
+        "pubmed:35415991" ;
+    sc:description "An open-source software application for Monte Carlo simulations of radiative transport." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_2428,
+        edam:operation_3431 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "MCCL" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://github.com/VirtualPhotonics/Vts.MonteCarlo/wiki/MCCL-Getting-Started-on-Linux>,
+        <https://github.com/VirtualPhotonics/Vts.MonteCarlo/wiki/MCCL-Getting-Started-on-Mac>,
+        <https://github.com/VirtualPhotonics/Vts.MonteCarlo/wiki/MCCL-Getting-Started-on-Windows> ;
+    sc:url "https://virtualphotonics.org/software-mccl" .
+
+<https://bio.tools/mccomedy> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0621,
+        edam:topic_3068,
+        edam:topic_3318,
+        edam:topic_3697 ;
+    sc:citation <https://doi.org/10.1371/JOURNAL.PCBI.1009777>,
+        "pmcid:PMC8830788",
+        "pubmed:35073313" ;
+    sc:description "A user-friendly tool for next-generation individual-based modeling of microbial consumer-resource systems." ;
+    sc:featureList edam:operation_3196,
+        edam:operation_3660,
+        edam:operation_3891,
+        edam:operation_3946 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "McComedy" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://git.ufz.de/bogdanow/mccomedy" .
+
 <https://bio.tools/mccortex> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0199,
@@ -287580,8 +297659,32 @@ ADnet: An integration powerful method(MCC-SP) for Identification of Causal Pathw
     biotools:primaryContact "Isaac Turner",
         "Kiran V Garimella" .
 
+<https://bio.tools/mcdb> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0078,
+        edam:topic_0202,
+        edam:topic_0209,
+        edam:topic_2640,
+        edam:topic_3473 ;
+    sc:citation <https://doi.org/10.1016/J.APSB.2021.05.032>,
+        "pmcid:PMC8546929",
+        "pubmed:34729303" ;
+    sc:description "A comprehensive curated mitotic catastrophe database for retrieval, protein sequence alignment, and target prediction." ;
+    sc:featureList edam:operation_2421,
+        edam:operation_2422,
+        edam:operation_2489,
+        edam:operation_4009 ;
+    sc:isAccessibleForFree true ;
+    sc:name "MCDB" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://www.combio-lezhang.online/MCDB/index_html/" .
+
 <https://bio.tools/mcdgpa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_2640,
@@ -287599,7 +297702,7 @@ ADnet: An integration powerful method(MCC-SP) for Identification of Causal Pathw
     biotools:primaryContact "Asia-Pacific Operations Research Center" .
 
 <https://bio.tools/mcf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0610,
@@ -287615,7 +297718,7 @@ ADnet: An integration powerful method(MCC-SP) for Identification of Causal Pathw
     sc:url "http://www.stat.duke.edu/research/software/west/MCF/index.html" .
 
 <https://bio.tools/mcgh> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0654,
@@ -287632,7 +297735,7 @@ ADnet: An integration powerful method(MCC-SP) for Identification of Causal Pathw
     biotools:primaryContact "Junbai Wang" .
 
 <https://bio.tools/mcic> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -287656,7 +297759,7 @@ Using a sequence similarity-based annotation and an ensemble of a support vector
     sc:url "https://cbb.ut.ac.ir/MCIC" .
 
 <https://bio.tools/mcid> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3419,
@@ -287676,7 +297779,7 @@ Using a sequence similarity-based annotation and an ensemble of a support vector
     sc:url "https://sorg-apps.shinyapps.io/tka_koos_mcid/" .
 
 <https://bio.tools/mcl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3316 ;
@@ -287690,7 +297793,7 @@ Using a sequence similarity-based annotation and an ensemble of a support vector
     sc:url "http://micans.org/mcl/" .
 
 <https://bio.tools/mcl-caw> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_3307 ;
     sc:citation "pubmed:20939868" ;
@@ -287702,7 +297805,7 @@ Using a sequence similarity-based annotation and an ensemble of a support vector
     sc:url "https://sites.google.com/site/mclcaw/" .
 
 <https://bio.tools/mclean> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3474 ;
     sc:citation <https://doi.org/10.7717/PEERJ-CS.145>,
@@ -287717,7 +297820,7 @@ Using a sequence similarity-based annotation and an ensemble of a support vector
     biotools:primaryContact "Daniel Alcaide" .
 
 <https://bio.tools/mcmc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3293 ;
@@ -287735,7 +297838,7 @@ Installing the CoupledMCMC package.""" ;
     sc:url "https://github.com/nicfel/CoupledMCMC" .
 
 <https://bio.tools/mcmc_ibdfinder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_2885,
@@ -287752,7 +297855,7 @@ Installing the CoupledMCMC package.""" ;
     biotools:primaryContact "Ida Moltke" .
 
 <https://bio.tools/mcmccodonsite> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_2269,
@@ -287767,7 +297870,7 @@ Installing the CoupledMCMC package.""" ;
     sc:url "http://www.bioinformatics.uottawa.ca/stephane/downloads.html" .
 
 <https://bio.tools/mcmicro> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0202,
         edam:topic_0769,
@@ -287785,7 +297888,7 @@ Installing the CoupledMCMC package.""" ;
     biotools:primaryContact <https://orcid.org/0000-0002-3364-1838> .
 
 <https://bio.tools/mcmseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0203,
@@ -287805,7 +297908,7 @@ This is the repo for the mcmseq R package, which has the wrapper functions to ru
     sc:url "https://github.com/stop-pre16/mcmseq" .
 
 <https://bio.tools/mcna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Script" ;
     sc:applicationSubCategory edam:topic_0602,
@@ -287825,8 +297928,29 @@ This is the repo for the mcmseq R package, which has the wrapper functions to ru
     sc:url "https://gitlab.com/pierrejulien.viailly/mcna/" ;
     biotools:primaryContact <https://orcid.org/0000-0002-9636-8971> .
 
+<https://bio.tools/mcnn> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0099,
+        edam:topic_3474,
+        edam:topic_3534,
+        edam:topic_3794 ;
+    sc:citation <https://doi.org/10.1109/TCBB.2022.3170367>,
+        "pubmed:35471886" ;
+    sc:description "Multiple convolutional neural networks for RNA-protein binding sites prediction." ;
+    sc:featureList edam:operation_2464,
+        edam:operation_3902,
+        edam:operation_3927 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "MCNN" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/biomg/MCNN" .
+
 <https://bio.tools/mcode> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0121,
@@ -287850,7 +297974,7 @@ This is the repo for the mcmseq R package, which has the wrapper functions to ru
     biotools:primaryContact "Gary Bader" .
 
 <https://bio.tools/mcpath> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0130,
         edam:topic_0154,
@@ -287873,7 +297997,7 @@ This is the repo for the mcmseq R package, which has the wrapper functions to ru
     biotools:primaryContact "MCPath Support" .
 
 <https://bio.tools/mcpca_popgen> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2885,
@@ -287898,7 +298022,7 @@ This is the repo for the mcmseq R package, which has the wrapper functions to ru
     sc:url "https://github.com/yiwenstat/MCPCA_PopGen" .
 
 <https://bio.tools/mcpd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3047,
         edam:topic_3321,
@@ -287915,7 +298039,7 @@ This is the repo for the mcmseq R package, which has the wrapper functions to ru
     biotools:primaryContact "Alexander Schliep" .
 
 <https://bio.tools/mcpdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0623,
@@ -287937,7 +298061,7 @@ MCPdb is an online resource for viewing and exploring bacterial microcompartment
     sc:url "https://mcpdb.mbi.ucla.edu/" .
 
 <https://bio.tools/mcpep> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0820,
@@ -287957,7 +298081,7 @@ MCPdb is an online resource for viewing and exploring bacterial microcompartment
     sc:url "http://bental.tau.ac.il/MCPep/" .
 
 <https://bio.tools/mcpese> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2259,
@@ -287974,7 +298098,7 @@ Monte Carlo Penalty Selection (MCPeSe) for graphical lasso.""" ;
     sc:url "https://github.com/markkukuismin/MCPeSe/" .
 
 <https://bio.tools/mcpromoter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0654,
@@ -287992,7 +298116,7 @@ Monte Carlo Penalty Selection (MCPeSe) for graphical lasso.""" ;
     biotools:primaryContact "Chris Burge" .
 
 <https://bio.tools/mcqfold> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0099 ;
@@ -288008,7 +298132,7 @@ Monte Carlo Penalty Selection (MCPeSe) for graphical lasso.""" ;
     biotools:primaryContact "Dirk Metzler" .
 
 <https://bio.tools/mcrestimate> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3071,
@@ -288028,12 +298152,13 @@ Monte Carlo Penalty Selection (MCPeSe) for graphical lasso.""" ;
     biotools:primaryContact "Marc Johannes" .
 
 <https://bio.tools/mcsea> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
-    sc:applicationSubCategory edam:topic_3053,
+    sc:applicationSubCategory edam:topic_3173,
         edam:topic_3295,
         edam:topic_3518 ;
-    sc:citation <https://doi.org/10.1101/293381> ;
+    sc:citation <https://doi.org/10.1093/bioinformatics/btz096>,
+        "pubmed:30753302" ;
     sc:description "Identification of diferentially methylated regions (DMRs) in predefined regions (promoters, CpG islands...) from the human genome using Illumina's 450K or EPIC microarray data. Provides methods to rank CpG probes based on linear models and includes plotting functions." ;
     sc:featureList edam:operation_0362,
         edam:operation_2424,
@@ -288044,14 +298169,14 @@ Monte Carlo Penalty Selection (MCPeSe) for graphical lasso.""" ;
     sc:operatingSystem "Linux",
         "Mac",
         "Windows" ;
-    sc:softwareHelp <http://bioconductor.org/packages/release/bioc/manuals/mCSEA/man/mCSEA.pdf>,
-        <http://bioconductor.org/packages/release/bioc/vignettes/mCSEA/inst/doc/mCSEA.pdf> ;
-    sc:softwareVersion "1.0.1" ;
+    sc:softwareHelp <https://www.bioconductor.org/packages/release/bioc/manuals/mCSEA/man/mCSEA.pdf>,
+        <https://www.bioconductor.org/packages/release/bioc/vignettes/mCSEA/inst/doc/mCSEA.pdf> ;
+    sc:softwareVersion "1.14.0" ;
     sc:url "http://bioconductor.org/packages/release/bioc/html/mCSEA.html" ;
-    biotools:primaryContact "Jordi Martorell-Marugán" .
+    biotools:primaryContact <https://orcid.org/0000-0002-5186-0735> .
 
 <https://bio.tools/mcshape> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3344,
@@ -288068,7 +298193,7 @@ Monte Carlo Penalty Selection (MCPeSe) for graphical lasso.""" ;
     biotools:primaryContact "Brian Schmidt" .
 
 <https://bio.tools/mcsm-ab> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0804,
@@ -288088,7 +298213,7 @@ Monte Carlo Penalty Selection (MCPeSe) for graphical lasso.""" ;
         "Dr. Douglas E. V. Pires" .
 
 <https://bio.tools/mcsm-membrane> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0130,
@@ -288112,7 +298237,7 @@ Douglas E. V. Pires & David B. Ascher.""" ;
     sc:url "http://biosig.unimelb.edu.au/mcsm_membrane" .
 
 <https://bio.tools/mcsm_na> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0128,
@@ -288131,7 +298256,7 @@ Douglas E. V. Pires & David B. Ascher.""" ;
         "Dr. Douglas E. V. Pires" .
 
 <https://bio.tools/mcsnp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2885,
@@ -288148,7 +298273,7 @@ Douglas E. V. Pires & David B. Ascher.""" ;
     sc:url "http://www.bioinformatics.org/mcsnp/wiki/" .
 
 <https://bio.tools/mcsplicer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0749,
@@ -288169,7 +298294,7 @@ McSplicer is a probabilistic model for estimating splice site usages, rather tha
     sc:url "https://github.com/canzarlab/McSplicer" .
 
 <https://bio.tools/mctbi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0099,
@@ -288184,8 +298309,74 @@ McSplicer is a probabilistic model for estimating splice site usages, rather tha
     sc:url "http://rna.physics.missouri.edu/MCTBI/" ;
     biotools:primaryContact "Support" .
 
+<https://bio.tools/mcx> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_3315,
+        edam:topic_3382,
+        edam:topic_3398 ;
+    sc:citation <https://doi.org/10.1117/1.JBO.27.8.083015>,
+        "pmcid:PMC9084406",
+        "pubmed:35534924" ;
+    sc:description "Graphics processing unit-accelerated Monte Carlo simulation of polarized light in complex three-dimensional media.'" ;
+    sc:featureList edam:operation_2426,
+        edam:operation_2940,
+        edam:operation_3454 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "MCX" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <http://mcx.space/wiki/>,
+        <http://mcx.space/wiki/?Learn> ;
+    sc:url "http://mcx.space/" .
+
+<https://bio.tools/mcx_cloud> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3315,
+        edam:topic_3316,
+        edam:topic_3382 ;
+    sc:citation <https://doi.org/10.1117/1.JBO.27.8.083008>,
+        "pmcid:PMC8728956",
+        "pubmed:34989198" ;
+    sc:description "Modern, scalable, high-performance and in-browser Monte Carlo simulation platform with cloud computing." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_2426,
+        edam:operation_3927 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "MCX Cloud" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://mcx.space/cloud" .
+
+<https://bio.tools/mcycdb> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Database portal" ;
+    sc:applicationSubCategory edam:topic_0602,
+        edam:topic_0623,
+        edam:topic_3174,
+        edam:topic_3697,
+        edam:topic_3837 ;
+    sc:citation <https://doi.org/10.1111/1755-0998.13589>,
+        "pubmed:35080120" ;
+    sc:description "A curated database for comprehensively profiling methane cycling processes of environmental microbiomes." ;
+    sc:featureList edam:operation_3460 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "MCycDB" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/qichao1984/MCycDB" .
+
 <https://bio.tools/md-task> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0154,
@@ -288201,8 +298392,47 @@ McSplicer is a probabilistic model for estimating splice site usages, rather tha
     sc:url "https://github.com/RUBi-ZA/MD-TASK" ;
     biotools:primaryContact "Özlem Tastan Bishop" .
 
+<https://bio.tools/md_davis> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0078,
+        edam:topic_0176,
+        edam:topic_0602,
+        edam:topic_3382 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC314>,
+        "pubmed:35532115" ;
+    sc:description "Interactive Data Visualization of Protein Molecular Dynamics." ;
+    sc:featureList edam:operation_0244,
+        edam:operation_0249,
+        edam:operation_0337,
+        edam:operation_2476 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "MD DaVis" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://md-davis.readthedocs.io> ;
+    sc:url "https://github.com/djmaity/md-davis/tree/v0.4.0" .
+
+<https://bio.tools/mdadp> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0634,
+        edam:topic_3301 ;
+    sc:citation <https://doi.org/10.1109/JBHI.2022.3156166>,
+        "pubmed:35254998" ;
+    sc:description "A webserver integrating database and prediction tools for microbe-disease associations." ;
+    sc:license "Not licensed" ;
+    sc:name "MDADP" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://mdadp.leelab2997.cn" .
+
 <https://bio.tools/mdag> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0749,
@@ -288224,7 +298454,7 @@ Learning a mixed directed acyclic graph based on both continuous and categorical
     sc:url "https://CRAN.R-project.org/package=mDAG" .
 
 <https://bio.tools/mdanalysis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0176 ;
     sc:citation <https://doi.org/10.1002/jcc.21787> ;
@@ -288239,7 +298469,7 @@ Learning a mixed directed acyclic graph based on both continuous and categorical
     biotools:primaryContact "MDAnalysis mainling list" .
 
 <https://bio.tools/mdat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3374,
@@ -288257,7 +298487,7 @@ Learning a mixed directed acyclic graph based on both continuous and categorical
     biotools:primaryContact "Nicholas Knowlton" .
 
 <https://bio.tools/mdbenchmark> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0176,
@@ -288287,10 +298517,10 @@ MDBenchmark: Benchmark molecular dynamics simulations¶.""" ;
 
 <https://bio.tools/mdbg> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3174,
@@ -288311,7 +298541,7 @@ MDBenchmark: Benchmark molecular dynamics simulations¶.""" ;
     sc:url "https://github.com/ekimb/rust-mdbg/" .
 
 <https://bio.tools/mdcontactcom> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0176,
         edam:topic_2814,
@@ -288329,7 +298559,7 @@ MDBenchmark: Benchmark molecular dynamics simulations¶.""" ;
     sc:url "https://gitlab.com/chiemotono/mdcontactcom" .
 
 <https://bio.tools/mdcs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3277 ;
@@ -288345,7 +298575,7 @@ MDBenchmark: Benchmark molecular dynamics simulations¶.""" ;
     sc:url "http://mips.helmholtz-muenchen.de/proj/mdcs/" .
 
 <https://bio.tools/mdd-carb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_2259,
@@ -288362,7 +298592,7 @@ MDBenchmark: Benchmark molecular dynamics simulations¶.""" ;
     biotools:primaryContact "Support" .
 
 <https://bio.tools/mdd-soh> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0736 ;
@@ -288379,14 +298609,14 @@ MDBenchmark: Benchmark molecular dynamics simulations¶.""" ;
 
 <https://bio.tools/mddmd> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ] ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein structure" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0883" ;
-            sc:name "Structure" ;
-            sc:sameAs "http://edamontology.org/data_0883" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0883" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Structure" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0176 ;
     sc:citation <https://doi.org/10.1021/ct300494q> ;
@@ -288403,7 +298633,7 @@ MDBenchmark: Benchmark molecular dynamics simulations¶.""" ;
     biotools:primaryContact "Institute for Research in Biomedicine Barcelona" .
 
 <https://bio.tools/mdeepred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0154,
@@ -288423,7 +298653,7 @@ MDeePred: Multi-Channel Deep Chemogenomic Modeling of Receptor-Ligand Binding Af
     sc:url "https://github.com/cansyl/MDeePred" .
 
 <https://bio.tools/mdeht> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -288443,24 +298673,44 @@ MDEHT is termed as Multivariate Differential Expression by Hotelling’s Test.""
     sc:name "MDEHT" ;
     sc:url "https://github.com/amanzju/MDEHT" .
 
+<https://bio.tools/mdgf-mcec> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0602,
+        edam:topic_0634,
+        edam:topic_3300,
+        edam:topic_3474,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.1093/BIB/BBAC289>,
+        "pubmed:35907779" ;
+    sc:description "A multi-view dual attention embedding model with cooperative ensemble learning for CircRNA-disease association prediction." ;
+    sc:featureList edam:operation_0303 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "MDGF-MCEC" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/ABard0/MDGF-MCEC" .
+
 <https://bio.tools/mdgsa> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3111" ;
-            sc:name "Processed microarray data" ;
-            sc:sameAs "http://edamontology.org/data_3111" ] ;
+            sc:additionalType "http://edamontology.org/data_3111" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "Processed microarray data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ],
+            sc:additionalType "http://edamontology.org/data_1669" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "P-value" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1669" ;
-            sc:name "P-value" ;
-            sc:sameAs "http://edamontology.org/data_1669" ],
+            sc:additionalType "http://edamontology.org/data_1772" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "Score" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1772" ;
-            sc:name "Score" ;
-            sc:sameAs "http://edamontology.org/data_1772" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -288485,7 +298735,7 @@ MDEHT is termed as Multivariate Differential Expression by Hotelling’s Test.""
     biotools:primaryContact "David Montaner" .
 
 <https://bio.tools/mdi-gpu> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_2259 ;
@@ -288500,7 +298750,7 @@ MDEHT is termed as Multivariate Differential Expression by Hotelling’s Test.""
     biotools:primaryContact "Warwick Systems Biology Centre" .
 
 <https://bio.tools/mdipa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0154,
@@ -288522,7 +298772,7 @@ A microRNA-drug Interaction Prediction Approach.""" ;
     sc:url "https://github.com/AliJam82/MDIPA" .
 
 <https://bio.tools/mdiv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3053,
         edam:topic_3056,
@@ -288536,7 +298786,7 @@ A microRNA-drug Interaction Prediction Approach.""" ;
     sc:url "http://people.binf.ku.dk/rasmus/webpage/mdiv.html" .
 
 <https://bio.tools/mdlab> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0176,
         edam:topic_2275,
@@ -288553,7 +298803,7 @@ A microRNA-drug Interaction Prediction Approach.""" ;
     biotools:primaryContact "Trevor Cickovski" .
 
 <https://bio.tools/mdloc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_2229 ;
@@ -288568,7 +298818,7 @@ A microRNA-drug Interaction Prediction Approach.""" ;
     sc:url "http://128.4.31.235/" .
 
 <https://bio.tools/mdm-task-web> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0176,
         edam:topic_0769,
@@ -288588,7 +298838,7 @@ A platform for the analysis of molecular dynamics trajectories using dynamic res
     sc:url "https://mdmtaskweb.rubi.ru.ac.za/" .
 
 <https://bio.tools/mdmapr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0605,
@@ -288609,7 +298859,7 @@ The Molecular Detection Mapping and Analysis Platform for R (MDMAPR) is an open-
     sc:url "https://hannerlab.shinyapps.io/MDMAPR/" .
 
 <https://bio.tools/mdmoby> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web API" ;
     sc:applicationSubCategory edam:topic_0082 ;
@@ -288625,7 +298875,7 @@ The Molecular Detection Mapping and Analysis Platform for R (MDMAPR) is an open-
     biotools:primaryContact "Institute for Research in Biomedicine Barcelona" .
 
 <https://bio.tools/mdock> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0154,
         edam:topic_0209,
@@ -288642,7 +298892,7 @@ The Molecular Detection Mapping and Analysis Platform for R (MDMAPR) is an open-
     biotools:primaryContact "Xiaoqin Zou" .
 
 <https://bio.tools/mdockpep> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -288663,7 +298913,7 @@ MDockPeP server predicts protein-peptide complex structures starting with the pr
     sc:url "http://zougrouptoolkit.missouri.edu/mdockpep" .
 
 <https://bio.tools/mdop> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0637,
@@ -288686,7 +298936,7 @@ The Molecular Data Organization for Publication (MDOP) R package has functions t
     sc:url "https://github.com/rgyoung6/MDOP" .
 
 <https://bio.tools/mdp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2259,
         edam:topic_3063,
@@ -288706,7 +298956,7 @@ The Molecular Data Organization for Publication (MDOP) R package has functions t
     biotools:primaryContact "Helder Nakaya" .
 
 <https://bio.tools/mdpet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_3384,
         edam:topic_3452 ;
@@ -288719,7 +298969,7 @@ The Molecular Data Organization for Publication (MDOP) R package has functions t
     sc:url "https://github.com/bbbbbbzhou/MDPET" .
 
 <https://bio.tools/mdpfinder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2259,
@@ -288735,7 +298985,7 @@ The Molecular Data Organization for Publication (MDOP) R package has functions t
     biotools:primaryContact "Shihua Zhang's Lab" .
 
 <https://bio.tools/mdqc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -288756,14 +299006,12 @@ The Molecular Data Organization for Publication (MDOP) R package has functions t
 
 <https://bio.tools/mdr> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:name "Protein sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:name "Protein features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1110/ps.035428.108> ;
@@ -288774,7 +299022,7 @@ The Molecular Data Organization for Publication (MDOP) R package has functions t
     sc:url "http://www.bioinfo.ifm.liu.se/services/mdr/" .
 
 <https://bio.tools/mdrpdt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0634,
@@ -288791,8 +299039,32 @@ The Molecular Data Organization for Publication (MDOP) R package has functions t
     sc:softwareHelp <http://ritchielab.psu.edu/mdr-downloads> ;
     sc:url "http://ritchielab.psu.edu/mdr-downloads" .
 
+<https://bio.tools/mdrsa> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:name "Mass spectrometry data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0121,
+        edam:topic_3301,
+        edam:topic_3324,
+        edam:topic_3474,
+        edam:topic_3520 ;
+    sc:citation <https://doi.org/10.3389/FMICB.2021.766206>,
+        "pmcid:PMC8678511",
+        "pubmed:34925273" ;
+    sc:description "The web-based application for rapid determination of multidrug-resistant Staphylococcus aureus with MALDI-TOF mass spectra" ;
+    sc:featureList edam:operation_3215,
+        edam:operation_3482 ;
+    sc:isAccessibleForFree true ;
+    sc:name "MDRSA" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://fdblab.csie.ncu.edu.tw/mdrsa/" .
+
 <https://bio.tools/mdscan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0602,
@@ -288810,7 +299082,7 @@ The Molecular Data Organization for Publication (MDOP) R package has functions t
     biotools:primaryContact "Xiaole Shirley Liu" .
 
 <https://bio.tools/mdsine> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3056,
@@ -288827,7 +299099,7 @@ The Molecular Data Organization for Publication (MDOP) R package has functions t
     biotools:primaryContact "Georg K. GerberEmail author" .
 
 <https://bio.tools/mdt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080 ;
@@ -288840,7 +299112,7 @@ The Molecular Data Organization for Publication (MDOP) R package has functions t
     sc:url "http://salilab.org/mdt/" .
 
 <https://bio.tools/mdts> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3168 ;
@@ -288859,14 +299131,14 @@ The Molecular Data Organization for Publication (MDOP) R package has functions t
 
 <https://bio.tools/mdweb> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0883" ;
-            sc:name "Structure" ;
-            sc:sameAs "http://edamontology.org/data_0883" ],
+            sc:additionalType "http://edamontology.org/data_1127" ;
+            sc:encodingFormat "http://edamontology.org/format_1964" ;
+            sc:name "PDB ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1127" ;
-            sc:name "PDB ID" ;
-            sc:sameAs "http://edamontology.org/data_1127" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0883" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Structure" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Workbench" ;
     sc:applicationSubCategory edam:topic_0081,
@@ -288886,7 +299158,7 @@ The Molecular Data Organization for Publication (MDOP) R package has functions t
     biotools:primaryContact "Institute for Research in Biomedicine Barcelona" .
 
 <https://bio.tools/me-scan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0632,
@@ -288910,8 +299182,26 @@ MEScanner is an intergrated tool for identifying polymorphic mobile element inse
     sc:name "ME-Scan" ;
     sc:url "https://github.com/JXing-Lab/ME-SCAN_2018" .
 
+<https://bio.tools/me_again_meds> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0621,
+        edam:topic_3063,
+        edam:topic_3305,
+        edam:topic_3418 ;
+    sc:citation <https://doi.org/10.1016/J.ECLINM.2021.101171>,
+        "pmcid:PMC8633963",
+        "pubmed:34877511" ;
+    sc:description "A site to help depressed patients select an antidepressant tahat is most likely to help them" ;
+    sc:isAccessibleForFree true ;
+    sc:name "Me Again Meds" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://hi.gmu.edu/ad" .
+
 <https://bio.tools/mea> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3169,
         edam:topic_3173,
@@ -288931,7 +299221,7 @@ MEScanner is an intergrated tool for identifying polymorphic mobile element inse
     sc:url "https://github.com/julienrichardalbert/MEA" .
 
 <https://bio.tools/meadmix> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3053,
         edam:topic_3056,
@@ -288948,7 +299238,7 @@ MEScanner is an intergrated tool for identifying polymorphic mobile element inse
     biotools:primaryContact "Prof. Ken Norris" .
 
 <https://bio.tools/meaga> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2259,
@@ -288966,26 +299256,26 @@ MEScanner is an intergrated tool for identifying polymorphic mobile element inse
 
 <https://bio.tools/meal> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3111" ;
-            sc:name "Processed microarray data" ;
-            sc:sameAs "http://edamontology.org/data_3111" ] ;
+            sc:additionalType "http://edamontology.org/data_3111" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "Processed microarray data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1669" ;
-            sc:name "P-value" ;
-            sc:sameAs "http://edamontology.org/data_1669" ],
+            sc:additionalType "http://edamontology.org/data_1669" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "P-value" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1772" ;
-            sc:name "Score" ;
-            sc:sameAs "http://edamontology.org/data_1772" ],
+            sc:additionalType "http://edamontology.org/data_2082" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "Matrix" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ],
+            sc:additionalType "http://edamontology.org/data_1772" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "Score" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2082" ;
-            sc:name "Matrix" ;
-            sc:sameAs "http://edamontology.org/data_2082" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -289007,7 +299297,7 @@ MEScanner is an intergrated tool for identifying polymorphic mobile element inse
     biotools:primaryContact "Carlos Ruiz" .
 
 <https://bio.tools/mean-centering-spectrum> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3374 ;
     sc:description "The process of mean-centering is to calculate the average spectrum of the data set and subtract that" ;
@@ -289024,7 +299314,7 @@ MEScanner is an intergrated tool for identifying polymorphic mobile element inse
     biotools:primaryContact "reza ha" .
 
 <https://bio.tools/meander> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0199 ;
     sc:citation "pubmed:23605045" ;
@@ -289032,8 +299322,31 @@ MEScanner is an intergrated tool for identifying polymorphic mobile element inse
     sc:name "Meander" ;
     sc:url "https://sites.google.com/site/meanderviz/" .
 
+<https://bio.tools/meangs> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0196,
+        edam:topic_0610,
+        edam:topic_3293,
+        edam:topic_3500,
+        edam:topic_3673 ;
+    sc:citation <https://doi.org/10.1093/BIB/BBAB538>,
+        "pubmed:34941991" ;
+    sc:description "An efficient seed-free tool for de novo assembling animal mitochondrial genome using whole genome NGS data." ;
+    sc:featureList edam:operation_0523,
+        edam:operation_0524,
+        edam:operation_0525,
+        edam:operation_3211 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "MEANGS" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/YanCCscu/meangs" .
+
 <https://bio.tools/means> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2259,
         edam:topic_3569 ;
@@ -289050,7 +299363,7 @@ MEScanner is an intergrated tool for identifying polymorphic mobile element inse
     biotools:primaryContact "Michael P. H. Stumpf" .
 
 <https://bio.tools/meap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3308 ;
     sc:citation <https://doi.org/10.1093/nar/gkr513> ;
@@ -289065,7 +299378,7 @@ MEScanner is an intergrated tool for identifying polymorphic mobile element inse
     sc:url "http://csbi.ltdk.helsinki.fi/meap/index.html" .
 
 <https://bio.tools/mearec> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3068,
@@ -289084,7 +299397,7 @@ MEArec: Fast and customizable simulation of extracellular recordings on Multi-El
     sc:url "https://github.com/alejoe91/MEArec" .
 
 <https://bio.tools/measure-myelin-axon-diameter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0611,
         edam:topic_3304,
@@ -289102,7 +299415,7 @@ MEArec: Fast and customizable simulation of extracellular recordings on Multi-El
     biotools:primaryContact "steed huang" .
 
 <https://bio.tools/measurepsf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3304,
@@ -289119,7 +299432,7 @@ MEArec: Fast and customizable simulation of extracellular recordings on Multi-El
     biotools:primaryContact "Rob Campbell" .
 
 <https://bio.tools/meat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0659,
@@ -289134,7 +299447,7 @@ MEArec: Fast and customizable simulation of extracellular recordings on Multi-El
     sc:url "https://ohlerlab.mdc-berlin.de/software/PAR-CLIP_motif_analysis_tool_87/" .
 
 <https://bio.tools/mebipred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0108,
@@ -289157,7 +299470,7 @@ MEArec: Fast and customizable simulation of extracellular recordings on Multi-El
     sc:url "http://services.bromberglab.org/mebipred" .
 
 <https://bio.tools/mebs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0622,
@@ -289177,7 +299490,7 @@ MEArec: Fast and customizable simulation of extracellular recordings on Multi-El
         "Valerie De Anda Torres" .
 
 <https://bio.tools/mecat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3168,
@@ -289199,7 +299512,7 @@ MEArec: Fast and customizable simulation of extracellular recordings on Multi-El
         "Ying Chen" .
 
 <https://bio.tools/meccog> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0602,
@@ -289215,7 +299528,7 @@ MEArec: Fast and customizable simulation of extracellular recordings on Multi-El
     sc:url "http://www.meccog.org" .
 
 <https://bio.tools/mechanalyze> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_3368,
         edam:topic_3372 ;
@@ -289233,18 +299546,15 @@ MEArec: Fast and customizable simulation of extracellular recordings on Multi-El
 
 <https://bio.tools/mechnetor> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2299" ;
-            sc:name "Gene name" ;
-            sc:sameAs "http://edamontology.org/data_2299" ],
+            sc:additionalType "http://edamontology.org/data_2291" ;
+            sc:name "UniProt ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3021" ;
-            sc:name "UniProt accession" ;
-            sc:sameAs "http://edamontology.org/data_3021" ],
+            sc:additionalType "http://edamontology.org/data_3021" ;
+            sc:name "UniProt accession" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2291" ;
-            sc:name "UniProt ID" ;
-            sc:sameAs "http://edamontology.org/data_2291" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2299" ;
+            sc:name "Gene name" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -289271,7 +299581,7 @@ MEArec: Fast and customizable simulation of extracellular recordings on Multi-El
     sc:url "http://mechnetor.russelllab.org" .
 
 <https://bio.tools/mechrna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0128,
@@ -289288,8 +299598,52 @@ MEArec: Fast and customizable simulation of extracellular recordings on Multi-El
         "Rolf Backofen",
         "Support" .
 
+<https://bio.tools/mecom> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0821,
+        edam:topic_3534 ;
+    sc:citation <https://doi.org/10.1021/ACS.JCIM.1C01335>,
+        "pubmed:35044164" ;
+    sc:description "MeCOM is a versatile tool for metalloenzyme active site comparison, which is based on the pharmacophore and α-carbon patterns. It can automatically recognize the active site of the given metalloenzyme, extract active site features, and superimpose metalloenzymes. This tool can be used to find important information to develop new specific metalloenzyme inhibitors, and it will be also useful for protein function prediction, drug repurposing, inhibitor selectivity investigation, and so on." ;
+    sc:featureList edam:operation_1831,
+        edam:operation_1834,
+        edam:operation_3898 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "MeCOM" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://mecom.ddtmlab.org/file_download/MeCOM%20Manual.pdf> ;
+    sc:url "https://mecom.ddtmlab.org" .
+
+<https://bio.tools/meconcord> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0749,
+        edam:topic_0780,
+        edam:topic_3168,
+        edam:topic_3295,
+        edam:topic_3674 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC248>,
+        "pmcid:PMC9235486",
+        "pubmed:35758820" ;
+    sc:description "A new metric to quantitatively characterize DNA methylation heterogeneity across reads and CpG sites." ;
+    sc:featureList edam:operation_3186,
+        edam:operation_3207,
+        edam:operation_3629,
+        edam:operation_3799 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "MeConcord" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/WangLabTHU/MeConcord" .
+
 <https://bio.tools/mecor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2815 ;
     sc:citation <https://doi.org/10.1016/J.CMPB.2021.106238>,
@@ -289302,7 +299656,7 @@ MEArec: Fast and customizable simulation of extracellular recordings on Multi-El
     sc:url "https://github.com/LindaNab/mecor" .
 
 <https://bio.tools/med> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0654 ;
@@ -289317,7 +299671,7 @@ MEArec: Fast and customizable simulation of extracellular recordings on Multi-El
     sc:url "http://cqb.pku.edu.cn/ZhuLab/med2_1/MED2.htm" .
 
 <https://bio.tools/med-tma> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3303,
@@ -289335,7 +299689,7 @@ MED-TMA: Machine learning-based Ensemble model for Diagnosis of TMA.""" ;
     sc:url "http://hematology.snu.ac.kr/medtma/" .
 
 <https://bio.tools/medExtractR> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0202,
         edam:topic_0218,
@@ -289348,7 +299702,7 @@ MED-TMA: Machine learning-based Ensemble model for Diagnosis of TMA.""" ;
     sc:url "https://cran.r-project.org/web/packages/medExtractR/index.html" .
 
 <https://bio.tools/medaka> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3474 ;
@@ -289367,7 +299721,7 @@ MED-TMA: Machine learning-based Ensemble model for Diagnosis of TMA.""" ;
     biotools:primaryContact "Oxford Nanopore Technologies" .
 
 <https://bio.tools/medalt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_2640,
@@ -289391,7 +299745,7 @@ The focal and broad copy number alterations associated with lineage expansion.""
     sc:url "https://github.com/KChen-lab/MEDALT" .
 
 <https://bio.tools/medas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_3170,
@@ -289411,7 +299765,7 @@ This repository contains the pipeline for generating exonic PSI used in MeDAS.""
     sc:url "https://das.chenlulab.com" .
 
 <https://bio.tools/medcalc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_3304,
@@ -289430,7 +299784,7 @@ MedCalc is a comprehensive statistical software package for biomedical research.
     sc:url "http://www.medcalc.org" .
 
 <https://bio.tools/medea> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0625,
@@ -289454,18 +299808,18 @@ MEDEA identifies lineage-specifying transcription factors (TFs) from chromatin a
 
 <https://bio.tools/medecom> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2082" ;
-            sc:name "Matrix" ;
-            sc:sameAs "http://edamontology.org/data_2082" ] ;
+            sc:additionalType "http://edamontology.org/data_2082" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Matrix" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ],
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3604" ;
+            sc:name "Plot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_3554" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -289491,7 +299845,7 @@ MEDEA identifies lineage-specifying transcription factors (TFs) from chromatin a
     biotools:primaryContact "Pavlo Lutsik" .
 
 <https://bio.tools/medeller> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0820,
@@ -289508,7 +299862,7 @@ MEDEA identifies lineage-specifying transcription factors (TFs) from chromatin a
     biotools:primaryContact "Charlotte Deane" .
 
 <https://bio.tools/medi-2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0089,
@@ -289530,7 +299884,7 @@ MEDEA identifies lineage-specifying transcription factors (TFs) from chromatin a
     sc:url "https://www.vumc.org/wei-lab/medi" .
 
 <https://bio.tools/medical-image-segmentation-segnet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -289548,7 +299902,7 @@ MEDEA identifies lineage-specifying transcription factors (TFs) from chromatin a
     biotools:primaryContact "Kei Otsuka" .
 
 <https://bio.tools/medical-ventilator-model> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344 ;
@@ -289563,7 +299917,7 @@ MEDEA identifies lineage-specifying transcription factors (TFs) from chromatin a
     biotools:primaryContact "Steve Miller" .
 
 <https://bio.tools/medical_relation_extraction> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0218,
         edam:topic_3303,
@@ -289584,7 +299938,7 @@ This is an implementation of BERT-CNN model used in our paper "A General Approac
     sc:url "https://github.com/chentao1999/MedicalRelationExtraction" .
 
 <https://bio.tools/medicascy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3047,
@@ -289604,7 +299958,7 @@ MEDICASCY is a multi-label based boosted random forest machine learning method t
     sc:url "http://pwp.gatech.edu/cssb/MEDICASCY" .
 
 <https://bio.tools/medicc2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0084,
@@ -289622,7 +299976,7 @@ MEDICASCY is a multi-label based boosted random forest machine learning method t
     biotools:primaryContact "Roland F Schwarz" .
 
 <https://bio.tools/medips> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3168,
@@ -289645,18 +299999,15 @@ MEDICASCY is a multi-label based boosted random forest machine learning method t
 
 <https://bio.tools/medline_ranker> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1088" ;
-            sc:name "Article ID" ;
-            sc:sameAs "http://edamontology.org/data_1088" ],
+            sc:additionalType "http://edamontology.org/data_0968" ;
+            sc:name "Keyword" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0968" ;
-            sc:name "Keyword" ;
-            sc:sameAs "http://edamontology.org/data_0968" ] ;
+            sc:additionalType "http://edamontology.org/data_1088" ;
+            sc:name "Article ID" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0972" ;
-            sc:name "Text mining report" ;
-            sc:sameAs "http://edamontology.org/data_0972" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0972" ;
+            sc:name "Text mining report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0218 ;
@@ -289674,7 +300025,7 @@ MEDICASCY is a multi-label based boosted random forest machine learning method t
     biotools:primaryContact "Jean Fred Fontaine" .
 
 <https://bio.tools/medlineranker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0218 ;
     sc:citation "pubmed:19429696" ;
@@ -289689,7 +300040,7 @@ MEDICASCY is a multi-label based boosted random forest machine learning method t
     biotools:primaryContact "Jean Fred Fontaine" .
 
 <https://bio.tools/medme> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0654,
@@ -289710,7 +300061,7 @@ MEDICASCY is a multi-label based boosted random forest machine learning method t
     biotools:primaryContact "Mattia Pelizzola" .
 
 <https://bio.tools/medminer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0621,
@@ -289729,7 +300080,7 @@ MEDICASCY is a multi-label based boosted random forest machine learning method t
     biotools:primaryContact "MedMiner Support" .
 
 <https://bio.tools/medock> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_2275,
@@ -289752,7 +300103,7 @@ MEDICASCY is a multi-label based boosted random forest machine learning method t
     sc:url "https://medock.ee.ncku.edu.tw/" .
 
 <https://bio.tools/medprodb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -289776,7 +300127,7 @@ MEDICASCY is a multi-label based boosted random forest machine learning method t
     sc:url "http://www.nipgr.ac.in/MedProDB" .
 
 <https://bio.tools/medsavant> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3053 ;
@@ -289789,12 +300140,58 @@ MEDICASCY is a multi-label based boosted random forest machine learning method t
     sc:softwareVersion "1.3.6" ;
     sc:url "http://www.genomesavant.com/p/medsavant/index" .
 
+<https://bio.tools/medtag> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0089,
+        edam:topic_0218,
+        edam:topic_0621,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1186/S12911-021-01706-4>,
+        "pmcid:PMC8684237",
+        "pubmed:34922517" ;
+    sc:description "A portable and customizable annotation tool for biomedical documents." ;
+    sc:featureList edam:operation_2422,
+        edam:operation_3280,
+        edam:operation_3283,
+        edam:operation_3778 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "MedTAG" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/MedTAG/medtag-core" .
+
+<https://bio.tools/medtator> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0091,
+        edam:topic_0218,
+        edam:topic_3303,
+        edam:topic_3500 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAB880>,
+        "pubmed:34983060" ;
+    sc:description "MedTator is a serverless text annotation tool for corpus development. It is built on HTML5 techniques and many open-source packages, and was designed to be easy-to-use for your annotation task." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_2422,
+        edam:operation_3280,
+        edam:operation_3778 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Apache-2.0" ;
+    sc:name "MedTator" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://github.com/OHNLP/MedTator/wiki/> ;
+    sc:url "https://ohnlp.github.io/MedTator" .
+
 <https://bio.tools/medusa> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3497" ;
-            sc:name "DNA sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_3497" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3497" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "DNA sequence (raw)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0122,
@@ -289815,7 +300212,7 @@ MEDICASCY is a multi-label based boosted random forest machine learning method t
         "Marco Galardini" .
 
 <https://bio.tools/medusa-protein> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0130,
         edam:topic_0154,
@@ -289834,7 +300231,7 @@ MEDICASCY is a multi-label based boosted random forest machine learning method t
         "Tatiana Galochkina" .
 
 <https://bio.tools/medusa3> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0602 ;
@@ -289845,7 +300242,7 @@ MEDICASCY is a multi-label based boosted random forest machine learning method t
     sc:url "https://sites.google.com/site/medusa3visualization/" .
 
 <https://bio.tools/medusa_motif> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0749,
@@ -289863,7 +300260,7 @@ MEDICASCY is a multi-label based boosted random forest machine learning method t
     biotools:primaryContact "Christina Leslie" .
 
 <https://bio.tools/medusa_pcr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0632,
@@ -289880,7 +300277,7 @@ MEDICASCY is a multi-label based boosted random forest machine learning method t
     biotools:primaryContact "Erik Shonhammer" .
 
 <https://bio.tools/medusapy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0602,
         edam:topic_3172,
@@ -289908,7 +300305,7 @@ Free document hosting provided by Read the Docs.""" ;
     sc:url "https://github.com/opencobra/Medusa" .
 
 <https://bio.tools/medyan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0176,
         edam:topic_0602,
@@ -289926,7 +300323,7 @@ Free document hosting provided by Read the Docs.""" ;
     biotools:primaryContact "James Komianos" .
 
 <https://bio.tools/meerkat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_2640,
@@ -289941,8 +300338,27 @@ Free document hosting provided by Read the Docs.""" ;
     sc:url "http://compbio.med.harvard.edu/Meerkat/" ;
     biotools:primaryContact "Lixing Yang" .
 
+<https://bio.tools/meet-uro> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_2229,
+        edam:topic_3360,
+        edam:topic_3379,
+        edam:topic_3384 ;
+    sc:citation <https://doi.org/10.1177/17588359221079580>,
+        "pmcid:PMC8883304",
+        "pubmed:35237353" ;
+    sc:description "Application of the Meet-URO score to metastatic renal cell carcinoma patients treated with second- and third-line cabozantinib." ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "Meet-URO" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://proviso.shinyapps.io/Meet-URO15_score/" .
+
 <https://bio.tools/mefisto> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0621,
@@ -289964,7 +300380,7 @@ MEFISTO provides an unsupervised approach to integrate multi-modal data with con
     sc:url "https://biofam.github.io/MOFA2/MEFISTO" .
 
 <https://bio.tools/mefit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_3168,
@@ -289984,7 +300400,7 @@ MEFISTO provides an unsupervised approach to integrate multi-modal data with con
     biotools:primaryContact "Hardik I. Parikh" .
 
 <https://bio.tools/mefsat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0621,
@@ -290006,17 +300422,44 @@ Medicinal Fungi Secondary Metabolite And Therapeutics (MeFSAT) is a curated data
     sc:url "https://cb.imsc.res.in/mefsat/" .
 
 <https://bio.tools/mega> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0084,
         edam:topic_3053,
         edam:topic_3056,
         edam:topic_3293 ;
-    sc:citation "pubmed:11751241",
+    sc:citation <https://doi.org/10.1093/bib/5.2.150>,
+        <https://doi.org/10.1093/bib/bbn017>,
+        <https://doi.org/10.1093/bioinformatics/10.2.189>,
+        <https://doi.org/10.1093/bioinformatics/17.12.1244>,
+        <https://doi.org/10.1093/bioinformatics/bts507>,
+        <https://doi.org/10.1093/molbev/msab120>,
+        <https://doi.org/10.1093/molbev/msm092>,
+        <https://doi.org/10.1093/molbev/msr121>,
+        <https://doi.org/10.1093/molbev/mst197>,
+        <https://doi.org/10.1093/molbev/msw054>,
+        <https://doi.org/10.1093/molbev/msy096>,
+        <https://doi.org/10.1093/molbev/msz312>,
+        "pmcid:PMC2562624",
+        "pmcid:PMC3203626",
+        "pmcid:PMC3467750",
+        "pmcid:PMC3840312",
+        "pmcid:PMC5967553",
+        "pmcid:PMC7086165",
+        "pmcid:PMC8210823",
+        "pmcid:PMC8233496",
+        "pubmed:11751241",
         "pubmed:15260895",
         "pubmed:17488738",
+        "pubmed:18417537",
         "pubmed:21546353",
+        "pubmed:22923298",
+        "pubmed:24132122",
+        "pubmed:27004904",
+        "pubmed:29722887",
+        "pubmed:31904846",
+        "pubmed:33892491",
         "pubmed:8019868" ;
     sc:description "Software package for phylogenetic analysis with a graphical user interface. It allows viewing and editing of the aligned input sequence data and provides many tools for phylogenetic and statistical analysis of the alignments." ;
     sc:featureList edam:operation_0540,
@@ -290032,8 +300475,31 @@ Medicinal Fungi Secondary Metabolite And Therapeutics (MeFSAT) is a curated data
     sc:softwareHelp <http://www.megasoftware.net/docs> ;
     sc:url "http://www.megasoftware.net/" .
 
+<https://bio.tools/megad> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0634,
+        edam:topic_3174,
+        edam:topic_3474,
+        edam:topic_3577,
+        edam:topic_3697 ;
+    sc:citation <https://doi.org/10.3390/LIFE12050669>,
+        "pmcid:PMC9143510",
+        "pubmed:35629336" ;
+    sc:description "Deep Learning for Rapid and Accurate Disease Status Prediction of Metagenomic Samples." ;
+    sc:featureList edam:operation_3435,
+        edam:operation_3460,
+        edam:operation_3927 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "MegaD" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/BioHPC/MegaD" .
+
 <https://bio.tools/megadepth> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0622,
@@ -290054,7 +300520,7 @@ This package provides an R interface to Megadepth by Christopher Wilks available
     sc:url "https://github.com/ChristopherWilks/megadepth" .
 
 <https://bio.tools/megadock> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_2275 ;
@@ -290068,7 +300534,7 @@ This package provides an R interface to Megadepth by Christopher Wilks available
     sc:url "http://www.bi.cs.titech.ac.jp/megadock/" .
 
 <https://bio.tools/megadock-web> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078 ;
     sc:citation <https://doi.org/10.1186/s12859-018-2073-x> ;
@@ -290084,7 +300550,7 @@ This package provides an R interface to Megadepth by Christopher Wilks available
         "Yutaka Akiyama" .
 
 <https://bio.tools/megago> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0121,
@@ -290105,7 +300571,7 @@ Calculate semantic distance for sets of Gene Ontology terms.""" ;
     sc:url "https://megago.ugent.be" .
 
 <https://bio.tools/megahit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0610,
@@ -290122,7 +300588,7 @@ Calculate semantic distance for sets of Gene Ontology terms.""" ;
     biotools:primaryContact "L3 Bioinformatics Limited" .
 
 <https://bio.tools/megalmm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0780,
@@ -290139,7 +300605,7 @@ Scripts to run all analyses and make all figures in the paper: MegaLMM: Mega-sca
     sc:url "https://github.com/deruncie/MegaLMM_analyses" .
 
 <https://bio.tools/megamapper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2533,
         edam:topic_3168,
@@ -290156,18 +300622,15 @@ Scripts to run all analyses and make all figures in the paper: MegaLMM: Mega-sca
 
 <https://bio.tools/megamerger> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ],
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -290198,7 +300661,7 @@ Scripts to run all analyses and make all figures in the paper: MegaLMM: Mega-sca
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/megamerger.html" .
 
 <https://bio.tools/megamerger_ws_husar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2> ;
@@ -290213,7 +300676,7 @@ Scripts to run all analyses and make all figures in the paper: MegaLMM: Mega-sca
     sc:url "http://genius.embnet.dkfz-heidelberg.de/menu/hobit/embdoc/megamerger.html" .
 
 <https://bio.tools/megan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation "pubmed:17255551" ;
@@ -290229,7 +300692,7 @@ Scripts to run all analyses and make all figures in the paper: MegaLMM: Mega-sca
     biotools:primaryContact "Huson DH" .
 
 <https://bio.tools/megan6> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3174 ;
     sc:citation <https://doi.org/10.1101/gr.120618.111> ;
@@ -290246,7 +300709,7 @@ Scripts to run all analyses and make all figures in the paper: MegaLMM: Mega-sca
     sc:url "http://ab.inf.uni-tuebingen.de/software/megan6/" .
 
 <https://bio.tools/megante> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0780,
@@ -290266,7 +300729,7 @@ Scripts to run all analyses and make all figures in the paper: MegaLMM: Mega-sca
     sc:url "https://megante.dna.affrc.go.jp" .
 
 <https://bio.tools/megapath> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3168,
@@ -290286,7 +300749,7 @@ Next-generation sequencing (NGS) enables unbiased detection of pathogens by mapp
     sc:url "https://sourceforge.net/projects/megapath" .
 
 <https://bio.tools/megar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0623,
         edam:topic_0625,
@@ -290309,8 +300772,35 @@ Machine learning has been utilized in many applications from biomedical imaging
     sc:name "MegaR" ;
     sc:url "https://github.com/BioHPC/MegaR" .
 
+<https://bio.tools/megh> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0621,
+        edam:topic_2269,
+        edam:topic_2815 ;
+    sc:citation <https://doi.org/10.1177/09622802221102620>,
+        "pmcid:PMC9315191",
+        "pubmed:35668699" ;
+    sc:description "A parametric class of general hazard models for clustered survival data." ;
+    sc:featureList edam:operation_3432,
+        edam:operation_3659,
+        edam:operation_3664 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "MEGH" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/FJRubio67/MEGH" .
+
+<https://bio.tools/mego_pay> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:description "ur company provides aeps cash withdrawal service to the best of our abilities. It is easy to start serving customers once you download the mego app, register & begin using it." ;
+    sc:name "Mego Pay" ;
+    sc:url "https://mymego.in/" .
+
 <https://bio.tools/megraft> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3174,
@@ -290328,7 +300818,7 @@ Machine learning has been utilized in many applications from biomedical imaging
     biotools:primaryContact "Johan Bengtsson-Palme" .
 
 <https://bio.tools/megu> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2259,
         edam:topic_3308,
@@ -290343,7 +300833,7 @@ Machine learning has been utilized in many applications from biomedical imaging
     sc:url "http://megu.iab.keio.ac.jp/" .
 
 <https://bio.tools/meigo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_2258,
@@ -290363,7 +300853,7 @@ Machine learning has been utilized in many applications from biomedical imaging
         "Julio Saez-Rodríguez" .
 
 <https://bio.tools/meigor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2259,
@@ -290382,7 +300872,7 @@ Machine learning has been utilized in many applications from biomedical imaging
     biotools:primaryContact "Jose Egea" .
 
 <https://bio.tools/meiosisonline> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
@@ -290405,7 +300895,7 @@ Machine learning has been utilized in many applications from biomedical imaging
     sc:url "https://mcg.ustc.edu.cn/bsc/meiosis/index.html" .
 
 <https://bio.tools/meirlop> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3169,
@@ -290432,7 +300922,7 @@ To get started using MEIRLOP, see our documentation, which gives you a quick ide
     sc:url "https://github.com/npdeloss/meirlop" .
 
 <https://bio.tools/mel-mp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0602,
@@ -290453,10 +300943,9 @@ To get started using MEIRLOP, see our documentation, which gives you a quick ide
 
 <https://bio.tools/melanie> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0942" ;
-            sc:name "2D PAGE image" ;
-            sc:sameAs "http://edamontology.org/data_0942" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0942" ;
+            sc:name "2D PAGE image" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3520 ;
     sc:citation <https://doi.org/10.1002/elps.1150181506> ;
@@ -290472,7 +300961,7 @@ To get started using MEIRLOP, see our documentation, which gives you a quick ide
     sc:url "http://world-2dpage.expasy.org/melanie/" .
 
 <https://bio.tools/melanomamine> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0218 ;
     sc:author "Andrés Cañada",
@@ -290494,7 +300983,7 @@ To get started using MEIRLOP, see our documentation, which gives you a quick ide
         "Martin Krallinger" .
 
 <https://bio.tools/meld> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0102,
@@ -290515,7 +301004,7 @@ The Multi-centre Epilepsy Lesion Detection (MELD) project is an international co
     sc:url "https://meldproject.github.io/" .
 
 <https://bio.tools/melinaii> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0203,
@@ -290539,10 +301028,10 @@ The Multi-centre Epilepsy Lesion Detection (MELD) project is an international co
 
 <https://bio.tools/meltdb> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:encodingFormat "http://edamontology.org/format_3245" ;
+            sc:name "Mass spectrometry data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3172 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btn452> ;
@@ -290565,7 +301054,7 @@ The Multi-centre Epilepsy Lesion Detection (MELD) project is an international co
     sc:url "http://meltdb.cebitec.uni-bielefeld.de" .
 
 <https://bio.tools/melting> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0097,
@@ -290583,7 +301072,7 @@ The Multi-centre Epilepsy Lesion Detection (MELD) project is an international co
     biotools:primaryContact "Nicolas Le Novère" .
 
 <https://bio.tools/meltingplot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0632,
         edam:topic_3068,
@@ -290602,18 +301091,18 @@ MeltingPlot is a tool for strains clustering/typing and epidemiological investig
 
 <https://bio.tools/mem> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1025" ;
-            sc:name "Gene identifier" ;
-            sc:sameAs "http://edamontology.org/data_1025" ],
+            sc:additionalType "http://edamontology.org/data_0928" ;
+            sc:encodingFormat "http://edamontology.org/format_3326" ;
+            sc:name "Gene expression profile" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0928" ;
-            sc:name "Gene expression profile" ;
-            sc:sameAs "http://edamontology.org/data_0928" ] ;
+            sc:additionalType "http://edamontology.org/data_1025" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Gene identifier" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3768" ;
-            sc:name "Clustered gene expression profiles" ;
-            sc:sameAs "http://edamontology.org/data_3768" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3768" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Clustered gene expression profiles" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -290639,7 +301128,7 @@ MeltingPlot is a tool for strains clustering/typing and epidemiological investig
         "Raivo Kolde" .
 
 <https://bio.tools/mem-adsvm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0820,
@@ -290657,8 +301146,28 @@ MeltingPlot is a tool for strains clustering/typing and epidemiological investig
     biotools:primaryContact "Man-Wai Mak",
         "Shibiao Wan" .
 
+<https://bio.tools/mem3dg> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0153,
+        edam:topic_0820,
+        edam:topic_3318,
+        edam:topic_3382 ;
+    sc:citation <https://doi.org/10.1101/2021.10.30.466618> ;
+    sc:description "Modeling Membrane Mechanochemical Dynamics in 3D using Discrete Differential Geometry." ;
+    sc:featureList edam:operation_2476,
+        edam:operation_3454,
+        edam:operation_3891 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MPL-2.0" ;
+    sc:name "Mem3DG" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/RangamaniLabUCSD/Mem3DG" .
+
 <https://bio.tools/memblob> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:citation <https://doi.org/10.1007/978-1-0716-0270-6_9>,
         <https://doi.org/10.1093/bioinformatics/btz539>,
@@ -290669,7 +301178,7 @@ MeltingPlot is a tool for strains clustering/typing and epidemiological investig
     sc:url "http://memblob.hegelab.org" .
 
 <https://bio.tools/membplugin> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_1317,
@@ -290690,7 +301199,7 @@ MeltingPlot is a tool for strains clustering/typing and epidemiological investig
     sc:url "http://sourceforge.net/projects/membplugin/" .
 
 <https://bio.tools/membrain> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0736,
         edam:topic_0820,
@@ -290707,7 +301216,7 @@ MeltingPlot is a tool for strains clustering/typing and epidemiological investig
     biotools:primaryContact "Hong Bin" .
 
 <https://bio.tools/membrane_channels> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0820,
@@ -290724,7 +301233,7 @@ MeltingPlot is a tool for strains clustering/typing and epidemiological investig
     biotools:primaryContact "The PhET Project" .
 
 <https://bio.tools/memdock> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0153,
@@ -290745,7 +301254,7 @@ MeltingPlot is a tool for strains clustering/typing and epidemiological investig
     sc:url "http://bioinfo3d.cs.tau.ac.il/Memdock/index.html" .
 
 <https://bio.tools/meme> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3510,
@@ -290764,38 +301273,38 @@ MeltingPlot is a tool for strains clustering/typing and epidemiological investig
 
 <https://bio.tools/meme_fimo> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
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+            sc:additionalType "http://edamontology.org/data_0006" ;
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@@ -290820,62 +301329,62 @@ MeltingPlot is a tool for strains clustering/typing and epidemiological investig
 
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-            sc:identifier "http://edamontology.org/data_0006" ;
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-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ],
+            sc:additionalType "http://edamontology.org/data_0850" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
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-            sc:identifier "http://edamontology.org/data_1353" ;
-            sc:name "Sequence motif" ;
-            sc:sameAs "http://edamontology.org/data_1353" ],
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-            sc:name "Phylogenetic tree" ;
-            sc:sameAs "http://edamontology.org/data_0872" ],
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-            sc:name "Statistical estimate score" ;
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+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3604" ;
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-            sc:name "Sequence motif" ;
-            sc:sameAs "http://edamontology.org/data_1353" ],
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+            sc:encodingFormat "http://edamontology.org/format_1360" ;
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-            sc:sameAs "http://edamontology.org/data_1353" ],
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-            sc:name "Hidden Markov model" ;
-            sc:sameAs "http://edamontology.org/data_1364" ],
+            sc:additionalType "http://edamontology.org/data_1353" ;
+            sc:encodingFormat "http://edamontology.org/format_1360" ;
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-            sc:identifier "http://edamontology.org/data_1772" ;
-            sc:name "Score" ;
-            sc:sameAs "http://edamontology.org/data_1772" ],
+            sc:additionalType "http://edamontology.org/data_1353" ;
+            sc:encodingFormat "http://edamontology.org/format_1360" ;
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-            sc:name "Sequence motif" ;
-            sc:sameAs "http://edamontology.org/data_1353" ],
+            sc:additionalType "http://edamontology.org/data_1353" ;
+            sc:encodingFormat "http://edamontology.org/format_1360" ;
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-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ],
+            sc:additionalType "http://edamontology.org/data_1353" ;
+            sc:encodingFormat "http://edamontology.org/format_1360" ;
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-            sc:identifier "http://edamontology.org/data_1353" ;
-            sc:name "Sequence motif" ;
-            sc:sameAs "http://edamontology.org/data_1353" ],
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:name "Sequence features" ],
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-            sc:identifier "http://edamontology.org/data_1353" ;
-            sc:name "Sequence motif" ;
-            sc:sameAs "http://edamontology.org/data_1353" ],
+            sc:additionalType "http://edamontology.org/data_0850" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
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-            sc:identifier "http://edamontology.org/data_0850" ;
-            sc:name "Sequence set" ;
-            sc:sameAs "http://edamontology.org/data_0850" ],
+            sc:additionalType "http://edamontology.org/data_2854" ;
+            sc:encodingFormat "http://edamontology.org/format_2200" ;
+            sc:name "Position-specific scoring matrix" ],
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-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ],
+            sc:additionalType "http://edamontology.org/data_1353" ;
+            sc:encodingFormat "http://edamontology.org/format_1360" ;
+            sc:name "Sequence motif" ],
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-            sc:identifier "http://edamontology.org/data_1353" ;
-            sc:name "Sequence motif" ;
-            sc:sameAs "http://edamontology.org/data_1353" ],
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_1915" ;
+            sc:name "Report" ],
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-            sc:identifier "http://edamontology.org/data_0869" ;
-            sc:name "Sequence-profile alignment" ;
-            sc:sameAs "http://edamontology.org/data_0869" ],
+            sc:additionalType "http://edamontology.org/data_0872" ;
+            sc:encodingFormat "http://edamontology.org/format_1910" ;
+            sc:name "Phylogenetic tree" ],
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-            sc:identifier "http://edamontology.org/data_1353" ;
-            sc:name "Sequence motif" ;
-            sc:sameAs "http://edamontology.org/data_1353" ],
+            sc:additionalType "http://edamontology.org/data_1353" ;
+            sc:encodingFormat "http://edamontology.org/format_1360" ;
+            sc:name "Sequence motif" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ],
+            sc:additionalType "http://edamontology.org/data_1353" ;
+            sc:encodingFormat "http://edamontology.org/format_1360" ;
+            sc:name "Sequence motif" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2854" ;
-            sc:name "Position-specific scoring matrix" ;
-            sc:sameAs "http://edamontology.org/data_2854" ],
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1962" ;
+            sc:name "Sequence" ],
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-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ],
+            sc:additionalType "http://edamontology.org/data_1364" ;
+            sc:name "Hidden Markov model" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1353" ;
-            sc:name "Sequence motif" ;
-            sc:sameAs "http://edamontology.org/data_1353" ],
+            sc:additionalType "http://edamontology.org/data_0869" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Sequence-profile alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2080" ;
-            sc:name "Database search results" ;
-            sc:sameAs "http://edamontology.org/data_2080" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:name "Sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1353" ;
-            sc:name "Sequence motif" ;
-            sc:sameAs "http://edamontology.org/data_1353" ],
+            sc:additionalType "http://edamontology.org/data_1022" ;
+            sc:name "Sequence feature label" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1353" ;
-            sc:name "Sequence motif" ;
-            sc:sameAs "http://edamontology.org/data_1353" ],
+            sc:additionalType "http://edamontology.org/data_1353" ;
+            sc:encodingFormat "http://edamontology.org/format_1360" ;
+            sc:name "Sequence motif" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1353" ;
-            sc:name "Sequence motif" ;
-            sc:sameAs "http://edamontology.org/data_1353" ],
+            sc:additionalType "http://edamontology.org/data_0850" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence set" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1353" ;
-            sc:name "Sequence motif" ;
-            sc:sameAs "http://edamontology.org/data_1353" ],
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ],
+            sc:additionalType "http://edamontology.org/data_1353" ;
+            sc:encodingFormat "http://edamontology.org/format_1360" ;
+            sc:name "Sequence motif" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Suite",
         "Web application" ;
@@ -291489,7 +301968,7 @@ MeltingPlot is a tool for strains clustering/typing and epidemiological investig
     biotools:primaryContact "MEME Suite Support" .
 
 <https://bio.tools/memes> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0160,
@@ -291516,7 +301995,7 @@ motif matching, comparison, and de novo discovery using the MEME Suite.""" ;
     biotools:primaryContact "Daniel J. McKay" .
 
 <https://bio.tools/memgen> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0176,
         edam:topic_0820,
@@ -291535,14 +302014,13 @@ motif matching, comparison, and de novo discovery using the MEME Suite.""" ;
 
 <https://bio.tools/memhdx> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ] ;
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Mass spectrometry data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3520 ;
     sc:author "Véronique Hourdel" ;
@@ -291569,14 +302047,14 @@ motif matching, comparison, and de novo discovery using the MEME Suite.""" ;
 
 <https://bio.tools/memloci> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2974" ;
-            sc:name "Protein sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_2974" ] ;
+            sc:additionalType "http://edamontology.org/data_2974" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence (raw)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Protein features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0140,
         edam:topic_0621,
@@ -291596,7 +302074,7 @@ motif matching, comparison, and de novo discovery using the MEME Suite.""" ;
         "Pier Luigi Martelli" .
 
 <https://bio.tools/memmorf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0153,
@@ -291618,7 +302096,7 @@ Membrane-binding Molecular Recognition Features.""" ;
     sc:url "https://memmorf.hegelab.org" .
 
 <https://bio.tools/memo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3295,
         edam:topic_3474,
@@ -291638,8 +302116,22 @@ Membrane-binding Molecular Recognition Features.""" ;
     biotools:primaryContact "Eva-Maria Geissen",
         "Nicole E. Radde" .
 
+<https://bio.tools/memo-ms> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_3172 ;
+    sc:citation <https://doi.org/10.3389/fbinf.2022.842964> ;
+    sc:description "Ms2 basEd saMple vectOrization (MEMO) is a method allowing a Retention Time (RT) agnostic alignment of metabolomics samples using the fragmentation spectra (MS2) of their consituents. The occurence of MS2 peaks and neutral losses (to the precursor) in each sample is counted and used to generate an MS2 fingerprint of the sample. These fingerprints can in a second stage be aligned to compare different samples." ;
+    sc:isAccessibleForFree true ;
+    sc:name "MEMO" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareVersion "0.1.4" ;
+    sc:url "https://github.com/mandelbrot-project/memo" .
+
 <https://bio.tools/memo_cancer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2259,
@@ -291655,7 +302147,7 @@ Membrane-binding Molecular Recognition Features.""" ;
     sc:url "http://cbio.mskcc.org/tools/memo/" .
 
 <https://bio.tools/memoir> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -291677,26 +302169,8 @@ Membrane-binding Molecular Recognition Features.""" ;
     sc:url "http://opig.stats.ox.ac.uk/webapps/memoir" ;
     biotools:primaryContact "Oxford Protein Informatics Group" .
 
-<https://bio.tools/memoryLSTM> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0128,
-        edam:topic_3474,
-        edam:topic_3557 ;
-    sc:citation <https://doi.org/10.1186/S12859-019-3199-1>,
-        "pmcid:PMC6882172",
-        "pubmed:31775612" ;
-    sc:description """Attention mechanism enhanced LSTM with residual architecture and its application for protein-protein interaction residue pairs prediction.
-
-BACKGROUND:Recurrent neural network(RNN) is a good way to process sequential data, but the capability of RNN to compute long sequence data is inefficient. As a variant of RNN, long short term memory(LSTM) solved the problem in some extent. Here we improved LSTM for big data application in protein-protein interaction interface residue pairs prediction based on the following two reasons. On the one hand, there are some deficiencies in LSTM, such as shallow layers, gradient explosion or vanishing, etc. With a dramatic data increasing, the imbalance between algorithm innovation and big data processing has been more serious and urgent.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'LSTM' (bio.tools/LSTM)""" ;
-    sc:featureList edam:operation_0272,
-        edam:operation_2464,
-        edam:operation_2492 ;
-    sc:name "memory(LSTM" ;
-    sc:url "https://github.com/Jiale-Liu/LSTM" .
-
 <https://bio.tools/memosys> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2259,
@@ -291712,8 +302186,17 @@ BACKGROUND:Recurrent neural network(RNN) is a good way to process sequential dat
     sc:url "http://icbi.at/software/memosys/memosys.shtml" ;
     biotools:primaryContact "Zlatko Trajanoski (Director)" .
 
+<https://bio.tools/memote> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:description "Testing of metabolic models" ;
+    sc:isAccessibleForFree true ;
+    sc:license "Apache-2.0" ;
+    sc:name "memote" ;
+    sc:softwareHelp <https://memote.readthedocs.io/en/latest/> ;
+    sc:url "https://github.com/opencobra/memote" .
+
 <https://bio.tools/memotif> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0166,
@@ -291736,14 +302219,14 @@ BACKGROUND:Recurrent neural network(RNN) is a good way to process sequential dat
 
 <https://bio.tools/mempype> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2974" ;
-            sc:name "Protein sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_2974" ] ;
+            sc:additionalType "http://edamontology.org/data_2974" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence (raw)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0896" ;
-            sc:name "Protein report" ;
-            sc:sameAs "http://edamontology.org/data_0896" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0896" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Protein report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0140,
         edam:topic_0621,
@@ -291766,7 +302249,7 @@ BACKGROUND:Recurrent neural network(RNN) is a good way to process sequential dat
         "Pier Luigi Martelli" .
 
 <https://bio.tools/memrgc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0199,
@@ -291785,7 +302268,7 @@ Memrgc is a tool for compression genome sequence. The program is written in C++1
     sc:url "https://github.com/yuansliu/memRGC" .
 
 <https://bio.tools/memsat-svm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_2814 ;
@@ -291802,7 +302285,7 @@ Memrgc is a tool for compression genome sequence. The program is written in C++1
     sc:url "http://bioinfadmin.cs.ucl.ac.uk/downloads/memsat-svm/" .
 
 <https://bio.tools/memtype-2l> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0820,
@@ -291819,7 +302302,7 @@ Memrgc is a tool for compression genome sequence. The program is written in C++1
     biotools:primaryContact "Hong Bin" .
 
 <https://bio.tools/mendel> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_2269,
@@ -291836,7 +302319,7 @@ Memrgc is a tool for compression genome sequence. The program is written in C++1
     sc:url "http://software.genetics.ucla.edu/mendel" .
 
 <https://bio.tools/mendel-gpu> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_2269,
@@ -291849,20 +302332,34 @@ Memrgc is a tool for compression genome sequence. The program is written in C++1
     sc:softwareHelp <https://code.google.com/archive/p/mendel-gpu/wikis/configuration.wiki> ;
     sc:url "https://code.google.com/p/mendel-gpu/" .
 
+<https://bio.tools/mendelgen> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:description "Mendelgen is a plasmid editing app that features cloning, sequencing alignment, vaccine design tools, and more." ;
+    sc:featureList edam:operation_0361,
+        edam:operation_0491,
+        edam:operation_0492,
+        edam:operation_0560,
+        edam:operation_0575,
+        edam:operation_0578,
+        edam:operation_2429 ;
+    sc:isAccessibleForFree true ;
+    sc:name "Mendelgen" ;
+    sc:softwareHelp <https://mendelgen.com/docs> ;
+    sc:url "https://mendelgen.com" .
+
 <https://bio.tools/mendelian> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ] ;
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence variations" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0916" ;
-            sc:name "Gene report" ;
-            sc:sameAs "http://edamontology.org/data_0916" ],
+            sc:additionalType "http://edamontology.org/data_0916" ;
+            sc:name "Gene report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:name "Sequence variations" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_3325 ;
@@ -291882,7 +302379,7 @@ Memrgc is a tool for compression genome sequence. The program is written in C++1
         "Filip Van Nieuwerburgh" .
 
 <https://bio.tools/mendelianrandomization> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2269,
@@ -291902,14 +302399,14 @@ Memrgc is a tool for compression genome sequence. The program is written in C++1
 
 <https://bio.tools/mendelmd> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ] ;
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence variations" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1270" ;
-            sc:name "Feature table" ;
-            sc:sameAs "http://edamontology.org/data_1270" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1270" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Feature table" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_1775,
         edam:topic_2885,
@@ -291929,7 +302426,7 @@ Memrgc is a tool for compression genome sequence. The program is written in C++1
     biotools:primaryContact "Sérgio D. J. Pena" .
 
 <https://bio.tools/mendelvar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0625,
@@ -291949,7 +302446,7 @@ A new tool that blends your everyday work apps into one. It's the all-in-one wor
     sc:url "https://mendelvar.mrcieu.ac.uk/" .
 
 <https://bio.tools/mendevar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_2830,
         edam:topic_3301,
@@ -291971,7 +302468,7 @@ A collection of open-access, curated databases that integrate population sequenc
     sc:url "https://pubmlst.org" .
 
 <https://bio.tools/meneco> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Script" ;
     sc:applicationSubCategory edam:topic_0602,
@@ -291993,7 +302490,7 @@ A collection of open-access, curated databases that integrate population sequenc
         "Sylvain Prigent" .
 
 <https://bio.tools/meningioma> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_2640,
@@ -292015,8 +302512,27 @@ Individual-patient prediction of meningioma malignancy and survival.""" ;
     sc:name "meningioma" ;
     sc:url "http://www.meningioma.app" .
 
+<https://bio.tools/menotr> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0097,
+        edam:topic_3292 ;
+    sc:citation <https://doi.org/10.1016/J.BPC.2021.106682>,
+        "pmcid:PMC8711798",
+        "pubmed:34634538" ;
+    sc:description "Multi-start Evolutionary Nonlinear OpTimizeR (MENOTR)." ;
+    sc:featureList edam:operation_0455,
+        edam:operation_0475 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "MENOTR" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/ZachIngram/2021-MENOTR" .
+
 <https://bio.tools/mensadb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0153,
         edam:topic_0154,
@@ -292036,18 +302552,18 @@ Individual-patient prediction of meningioma malignancy and survival.""" ;
 
 <https://bio.tools/mentalist> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3210" ;
-            sc:name "Genome index" ;
-            sc:sameAs "http://edamontology.org/data_3210" ],
+            sc:additionalType "http://edamontology.org/data_3497" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "DNA sequence (raw)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3497" ;
-            sc:name "DNA sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_3497" ] ;
+            sc:additionalType "http://edamontology.org/data_3210" ;
+            sc:encodingFormat "http://edamontology.org/format_3590" ;
+            sc:name "Genome index" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3492" ;
-            sc:name "Nucleic acid signature" ;
-            sc:sameAs "http://edamontology.org/data_3492" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3492" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Nucleic acid signature" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199 ;
     sc:citation <https://doi.org/10.1099/mgen.0.000146> ;
@@ -292063,10 +302579,10 @@ Individual-patient prediction of meningioma malignancy and survival.""" ;
 
 <https://bio.tools/mentha> a sc:SoftwareApplication ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0906" ;
-            sc:name "Protein interaction data" ;
-            sc:sameAs "http://edamontology.org/data_0906" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0906" ;
+            sc:encodingFormat "http://edamontology.org/format_3158" ;
+            sc:name "Protein interaction data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_3325 ;
@@ -292091,7 +302607,7 @@ Individual-patient prediction of meningioma malignancy and survival.""" ;
         "Luana Licata" .
 
 <https://bio.tools/menu-builder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_3071 ;
@@ -292107,7 +302623,7 @@ Individual-patient prediction of meningioma malignancy and survival.""" ;
     biotools:primaryContact "greenify" .
 
 <https://bio.tools/mephas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Web application" ;
     sc:applicationSubCategory edam:topic_2229,
@@ -292129,7 +302645,7 @@ MEPHAS is a shiny-based statistical software that was developed to support stati
     sc:url "https://alain003.phs.osaka-u.ac.jp/mephas/" .
 
 <https://bio.tools/mepsa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0821,
@@ -292148,7 +302664,7 @@ MEPHAS is a shiny-based statistical software that was developed to support stati
         "Paulino G´omez-Puertas" .
 
 <https://bio.tools/meqa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3572,
@@ -292164,7 +302680,7 @@ MEPHAS is a shiny-based statistical software that was developed to support stati
     sc:url "http://life.tongji.edu.cn/meqa/" .
 
 <https://bio.tools/meraculous> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196 ;
     sc:citation "pubmed:21876754" ;
@@ -292177,7 +302693,7 @@ MEPHAS is a shiny-based statistical software that was developed to support stati
     biotools:primaryContact "Eugene Goltsman" .
 
 <https://bio.tools/merantk> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_3295,
@@ -292192,7 +302708,7 @@ MEPHAS is a shiny-based statistical software that was developed to support stati
     sc:url "http://www.icbi.at/software/meRanTK/merantk.shtml" .
 
 <https://bio.tools/merav> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2229,
@@ -292210,7 +302726,7 @@ MEPHAS is a shiny-based statistical software that was developed to support stati
     biotools:primaryContact "Yoav Shaul" .
 
 <https://bio.tools/mercator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0654 ;
@@ -292224,7 +302740,7 @@ MEPHAS is a shiny-based statistical software that was developed to support stati
     sc:url "http://www.biostat.wisc.edu/~cdewey/mercator/" .
 
 <https://bio.tools/mercator_plant> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0780,
@@ -292242,7 +302758,7 @@ MEPHAS is a shiny-based statistical software that was developed to support stati
     biotools:primaryContact "MARC LOHSE" .
 
 <https://bio.tools/mercatorr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3063,
         edam:topic_3303 ;
@@ -292255,7 +302771,7 @@ MEPHAS is a shiny-based statistical software that was developed to support stati
     sc:url "https://cran.r-project.org/web/packages/Mercator/index.html" .
 
 <https://bio.tools/merfin> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
@@ -292273,7 +302789,7 @@ MEPHAS is a shiny-based statistical software that was developed to support stati
     sc:url "https://github.com/arangrhie/merfin" .
 
 <https://bio.tools/mergemaid> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -292293,7 +302809,7 @@ MEPHAS is a shiny-based statistical software that was developed to support stati
     biotools:primaryContact "Xiaogang Zhong" .
 
 <https://bio.tools/mergeomics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Suite",
         "Web application",
@@ -292319,7 +302835,7 @@ MEPHAS is a shiny-based statistical software that was developed to support stati
     biotools:primaryContact "Douglas Arneson" .
 
 <https://bio.tools/mergeomics_pipeline> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3174,
@@ -292340,26 +302856,21 @@ MEPHAS is a shiny-based statistical software that was developed to support stati
 
 <https://bio.tools/merger> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0874" ;
-            sc:name "Comparison matrix" ;
-            sc:sameAs "http://edamontology.org/data_0874" ],
+            sc:additionalType "http://edamontology.org/data_0874" ;
+            sc:name "Comparison matrix" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ],
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1381" ;
-            sc:name "Sequence alignment (pair)" ;
-            sc:sameAs "http://edamontology.org/data_1381" ],
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1381" ;
+            sc:name "Sequence alignment (pair)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0097 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -292391,58 +302902,58 @@ MEPHAS is a shiny-based statistical software that was developed to support stati
 
 <https://bio.tools/mergeslidingwindowsclusters> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_3003" ;
+            sc:name "Annotation track" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
+            sc:name "Sequence trace" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1975" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
+            sc:name "Sequence trace" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2305" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2306" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2305" ;
+            sc:name "Data" ],
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-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1975" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2306" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_3003" ;
+            sc:name "Annotation track" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1975" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3365 ;
@@ -292461,58 +302972,58 @@ MEPHAS is a shiny-based statistical software that was developed to support stati
 
 <https://bio.tools/mergetranscriptlists> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1975" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1975" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
+            sc:name "Sequence trace" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2306" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_3003" ;
+            sc:name "Annotation track" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ],
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
+            sc:name "Sequence trace" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2305" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2306" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ],
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_3003" ;
+            sc:name "Annotation track" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2305" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1975" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3071 ;
@@ -292531,38 +303042,38 @@ MEPHAS is a shiny-based statistical software that was developed to support stati
 
 <https://bio.tools/mergingdataclusterize> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_3003" ;
+            sc:name "Annotation track" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
+            sc:name "Sequence trace" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2305" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1975" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1975" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3168 ;
@@ -292581,7 +303092,7 @@ MEPHAS is a shiny-based statistical software that was developed to support stati
     biotools:primaryContact "Galaxy Support Team" .
 
 <https://bio.tools/merida> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0202,
         edam:topic_2640,
@@ -292602,7 +303113,7 @@ MEPHAS is a shiny-based statistical software that was developed to support stati
     sc:url "https://github.com/unisb-bioinf/MERIDA.git" .
 
 <https://bio.tools/merip-pf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0099,
@@ -292619,8 +303130,31 @@ MEPHAS is a shiny-based statistical software that was developed to support stati
     sc:url "http://software.big.ac.cn/MeRIP-PF.html" ;
     biotools:primaryContact "YU Jun" .
 
+<https://bio.tools/meripseqpipe> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0769,
+        edam:topic_3169,
+        edam:topic_3170,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC025>,
+        "pubmed:35022687" ;
+    sc:description "An integrated analysis pipeline for MeRIP-seq data based on Nextflow." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3222,
+        edam:operation_3223 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "MeRIPseqPipe" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://github.com/canceromics/MeRIPseqPipe/blob/main/CODE_OF_CONDUCT.md> ;
+    sc:url "https://github.com/canceromics/MeRIPseqPipe" .
+
 <https://bio.tools/merit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0622,
@@ -292640,7 +303174,7 @@ It considers the genomic context of the errors, including the nucleotides immedi
     biotools:primaryContact "Hossein Khiabanian" .
 
 <https://bio.tools/merlin> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3517 ;
@@ -292656,42 +303190,69 @@ It considers the genomic context of the errors, including the nucleotides immedi
     sc:softwareHelp <https://csg.sph.umich.edu/abecasis/Merlin/tour/> ;
     sc:url "https://csg.sph.umich.edu/abecasis/Merlin/" .
 
-<https://bio.tools/merlin_-_MEtabolic_models_Reconstruction_using_genome-scaLe_INformation> a sc:SoftwareApplication ;
+<https://bio.tools/merlin-sysbio> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ],
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1179" ;
-            sc:name "NCBI taxonomy ID" ;
-            sc:sameAs "http://edamontology.org/data_1179" ] ;
+            sc:additionalType "http://edamontology.org/data_1179" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "NCBI taxonomy ID" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0950" ;
-            sc:name "Mathematical model" ;
-            sc:sameAs "http://edamontology.org/data_0950" ],
+            sc:additionalType "http://edamontology.org/data_0950" ;
+            sc:encodingFormat "http://edamontology.org/format_2585" ;
+            sc:name "Mathematical model" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2129" ;
-            sc:name "File format name" ;
-            sc:sameAs "http://edamontology.org/data_2129" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2129" ;
+            sc:encodingFormat "http://edamontology.org/format_1936" ;
+            sc:name "File format name" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_2259 ;
-    sc:citation <https://doi.org/10.1093/nar/gkv294> ;
-    sc:description """merlin is a simple, graphical and user-oriented solution for the reconstruction of genome-scale metabolic models.
+    sc:citation <https://doi.org/10.1093/nar/gkac459>,
+        <https://doi.org/10.1093/nar/gkv294>,
+        "pmcid:PMC4417185",
+        "pmcid:PMC9226533",
+        "pubmed:25845595",
+        "pubmed:35694833" ;
+    sc:description """Merlin is a simple, graphical and user-oriented solution for the reconstruction of genome-scale metabolic models.
 
 It will guide you along the model reconstruction, providing several tools that help to improve and curate the model throughout the whole process.""" ;
     sc:featureList edam:operation_3660 ;
     sc:isAccessibleForFree true ;
     sc:license "GPL-3.0" ;
-    sc:name "merlin - MEtabolic models Reconstruction using genome-scaLe INformation" ;
+    sc:name "merlin" ;
     sc:operatingSystem "Linux",
         "Mac",
         "Windows" ;
     sc:softwareVersion "4.0.0-beta" ;
     sc:url "https://merlin-sysbio.org/" .
 
+<https://bio.tools/mermaid_py> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_3047,
+        edam:topic_3315,
+        edam:topic_3336,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1186/S13321-021-00572-6>,
+        "pmcid:PMC8626955",
+        "pubmed:34838134" ;
+    sc:description "An open source automated hit-to-lead method based on deep reinforcement learning." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3938 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "MERMAID" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/sekijima-lab/mermaid" .
+
 <https://bio.tools/merops> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0154,
@@ -292714,22 +303275,18 @@ It will guide you along the model reconstruction, providing several tools that h
 
 <https://bio.tools/merops_blast> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3494" ;
-            sc:name "DNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3494" ],
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:name "DNA sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:name "Protein sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0857" ;
-            sc:name "Sequence search results" ;
-            sc:sameAs "http://edamontology.org/data_0857" ],
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:name "Protein features" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0857" ;
+            sc:name "Sequence search results" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0821 ;
@@ -292752,7 +303309,7 @@ It will guide you along the model reconstruction, providing several tools that h
     biotools:primaryContact "MEROPS group" .
 
 <https://bio.tools/merp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3305,
@@ -292768,7 +303325,7 @@ It will guide you along the model reconstruction, providing several tools that h
     biotools:primaryContact "Benjamin F. Voight" .
 
 <https://bio.tools/merqury> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0780,
@@ -292789,7 +303346,7 @@ Merqury provides a set of tools for this purpose.""" ;
     sc:url "https://github.com/marbl/merqury" .
 
 <https://bio.tools/merrill> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3318,
         edam:topic_3332 ;
@@ -292804,8 +303361,21 @@ Merqury provides a set of tools for this purpose.""" ;
     sc:url "https://www.geos.ed.ac.uk/geosciences/research/projects/rockmag" ;
     biotools:primaryContact "Pádraig Ó Conbhuí" .
 
+<https://bio.tools/meryl> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0080,
+        edam:topic_0622,
+        edam:topic_3673 ;
+    sc:citation <https://doi.org/10.1186/s13059-020-02134-9> ;
+    sc:description "Meryl is a tool for counting and working with sets of k-mers that was originally developed for use in the Celera Assembler and has since been migrated and maintained as part of Canu." ;
+    sc:featureList edam:operation_3472 ;
+    sc:name "Meryl" ;
+    sc:softwareVersion "1.3" ;
+    sc:url "https://github.com/marbl/meryl" .
+
 <https://bio.tools/mesa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0196,
@@ -292828,7 +303398,7 @@ MESA: automated assessment of synthetic DNA fragments and simulation of DNA synt
     sc:url "http://mesa.mosla.de" .
 
 <https://bio.tools/mesadb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0154,
@@ -292854,14 +303424,12 @@ MESA: automated assessment of synthetic DNA fragments and simulation of DNA synt
 
 <https://bio.tools/mesalina> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ] ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:name "Nucleic acid sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2070" ;
-            sc:name "Sequence motif (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_2070" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2070" ;
+            sc:name "Sequence motif (nucleic acid)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3511 ;
     sc:citation <https://doi.org/10.5220/0004903502330238> ;
@@ -292873,7 +303441,7 @@ MESA: automated assessment of synthetic DNA fragments and simulation of DNA synt
     sc:url "https://github.ugent.be/ComputationalBiology/mesalina" .
 
 <https://bio.tools/mescan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0199,
@@ -292894,20 +303462,43 @@ We provide an example dataset from TCGA Ovarian Cancer to demonstrate the pipeli
     sc:name "MEScan" ;
     sc:url "https://github.com/MarkeyBBSRF/MEScan" .
 
+<https://bio.tools/meshclust> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0196,
+        edam:topic_0654,
+        edam:topic_0798,
+        edam:topic_3474,
+        edam:topic_3697 ;
+    sc:citation <https://doi.org/10.1186/S12864-022-08619-0>,
+        "pmcid:PMC9171953",
+        "pubmed:35668366" ;
+    sc:description "High-quality clustering of DNA sequences using the mean shift algorithm and alignment-free identity scores." ;
+    sc:featureList edam:operation_3432,
+        edam:operation_3435,
+        edam:operation_3472 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "MeShClust" ;
+    sc:operatingSystem "Linux",
+        "Mac" ;
+    sc:softwareVersion "3.0" ;
+    sc:url "https://github.com/BioinformaticsToolsmith/MeShClust2" .
+
 <https://bio.tools/meshdbi> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3509" ;
-            sc:name "Ontology mapping" ;
-            sc:sameAs "http://edamontology.org/data_3509" ],
+            sc:additionalType "http://edamontology.org/data_0967" ;
+            sc:encodingFormat "http://edamontology.org/format_2195" ;
+            sc:name "Ontology concept data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0967" ;
-            sc:name "Ontology concept data" ;
-            sc:sameAs "http://edamontology.org/data_0967" ] ;
+            sc:additionalType "http://edamontology.org/data_3509" ;
+            sc:encodingFormat "http://edamontology.org/format_2195" ;
+            sc:name "Ontology mapping" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0582" ;
-            sc:name "Ontology" ;
-            sc:sameAs "http://edamontology.org/data_0582" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0582" ;
+            sc:encodingFormat "http://edamontology.org/format_2195" ;
+            sc:name "Ontology" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3063,
@@ -292928,7 +303519,7 @@ We provide an example dataset from TCGA Ovarian Cancer to demonstrate the pipeli
     biotools:primaryContact <http://orcid.org/0000-0003-3797-2148> .
 
 <https://bio.tools/meshes> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3068,
@@ -292948,22 +303539,22 @@ We provide an example dataset from TCGA Ovarian Cancer to demonstrate the pipeli
 
 <https://bio.tools/meshr> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2295" ;
-            sc:name "Gene ID" ;
-            sc:sameAs "http://edamontology.org/data_2295" ],
+            sc:additionalType "http://edamontology.org/data_2295" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Gene ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0582" ;
-            sc:name "Ontology" ;
-            sc:sameAs "http://edamontology.org/data_0582" ] ;
+            sc:additionalType "http://edamontology.org/data_0582" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Ontology" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3509" ;
-            sc:name "Ontology mapping" ;
-            sc:sameAs "http://edamontology.org/data_3509" ],
+            sc:additionalType "http://edamontology.org/data_3509" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Ontology mapping" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3063,
@@ -292985,18 +303576,18 @@ We provide an example dataset from TCGA Ovarian Cancer to demonstrate the pipeli
 
 <https://bio.tools/meshsim> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0582" ;
-            sc:name "Ontology" ;
-            sc:sameAs "http://edamontology.org/data_0582" ],
+            sc:additionalType "http://edamontology.org/data_2526" ;
+            sc:encodingFormat "http://edamontology.org/format_2195" ;
+            sc:name "Text data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2526" ;
-            sc:name "Text data" ;
-            sc:sameAs "http://edamontology.org/data_2526" ] ;
+            sc:additionalType "http://edamontology.org/data_0582" ;
+            sc:encodingFormat "http://edamontology.org/format_2195" ;
+            sc:name "Ontology" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1772" ;
-            sc:name "Score" ;
-            sc:sameAs "http://edamontology.org/data_1772" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1772" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Score" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0089,
@@ -293016,7 +303607,7 @@ We provide an example dataset from TCGA Ovarian Cancer to demonstrate the pipeli
     biotools:primaryContact "Jing ZHou" .
 
 <https://bio.tools/meskit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0091 ;
@@ -293038,7 +303629,7 @@ We provide an example dataset from TCGA Ovarian Cancer to demonstrate the pipeli
     biotools:primaryContact <https://orcid.org/0000-0001-9938-9973> .
 
 <https://bio.tools/mesmer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_1317 ;
@@ -293053,7 +303644,7 @@ We provide an example dataset from TCGA Ovarian Cancer to demonstrate the pipeli
     biotools:primaryContact "Mark P. Foster" .
 
 <https://bio.tools/mesoSPIM_initiative> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3064,
         edam:topic_3304,
@@ -293066,16 +303657,31 @@ We provide an example dataset from TCGA Ovarian Cancer to demonstrate the pipeli
     sc:name "mesoSPIM initiative" ;
     sc:url "http://www.mesospim.org" .
 
+<https://bio.tools/mesocosm> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_2815,
+        edam:topic_3489,
+        edam:topic_3573 ;
+    sc:citation <https://doi.org/10.1016/J.IMPACT.2020.100288>,
+        "pubmed:35559777" ;
+    sc:description "A mesocosm database management system for environmental nanosafety." ;
+    sc:featureList edam:operation_2421 ;
+    sc:isAccessibleForFree true ;
+    sc:name "mesocosm" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://aliayadi.github.io/MESOCOSM-database/" .
+
 <https://bio.tools/mesord> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2087" ;
-            sc:name "Molecular property" ;
-            sc:sameAs "http://edamontology.org/data_2087" ] ;
+            sc:additionalType "http://edamontology.org/data_2087" ;
+            sc:name "Molecular property" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2087" ;
-            sc:name "Molecular property" ;
-            sc:sameAs "http://edamontology.org/data_2087" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2087" ;
+            sc:name "Molecular property" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_3332 ;
@@ -293090,7 +303696,7 @@ We provide an example dataset from TCGA Ovarian Cancer to demonstrate the pipeli
     sc:url "http://mesord.sourceforge.net/" .
 
 <https://bio.tools/messar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3172,
@@ -293110,7 +303716,7 @@ MESSAR 0.1 (MEtabolite SubStructure Auto-Recommender).""" ;
     sc:url "http://messar.biodatamining.be" .
 
 <https://bio.tools/messi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2229,
@@ -293128,18 +303734,18 @@ MESSI (Mixture of Experts for Spatial Signaling genes Identification) is a predi
 
 <https://bio.tools/messina> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0928" ;
-            sc:name "Gene expression profile" ;
-            sc:sameAs "http://edamontology.org/data_0928" ] ;
+            sc:additionalType "http://edamontology.org/data_0928" ;
+            sc:encodingFormat "http://edamontology.org/format_2058" ;
+            sc:name "Gene expression profile" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ],
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -293163,7 +303769,7 @@ MESSI (Mixture of Experts for Spatial Signaling genes Identification) is a predi
     biotools:primaryContact "Mark Pinese" .
 
 <https://bio.tools/met> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0749,
@@ -293183,8 +303789,32 @@ MESSI (Mixture of Experts for Spatial Signaling genes Identification) is a predi
     sc:url "http://veda.cs.uiuc.edu/MET/" ;
     biotools:primaryContact "Charles Blatti" .
 
+<https://bio.tools/met4j> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:encodingFormat "http://edamontology.org/format_2585" ;
+            sc:name "Pathway or network" ] ;
+    bsc:output [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:encodingFormat "http://edamontology.org/format_2585" ;
+            sc:name "Pathway or network" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0602 ;
+    sc:author "Clément Frainay",
+        "Ludovic Cottret" ;
+    sc:description "Java library for metabolic networks. Singularity and docker containers allow to use met4j without installing Java or computational skills. Met4j apps allow to parse and edit SBML and to analyse the network with graph analysis." ;
+    sc:featureList edam:operation_3660,
+        edam:operation_3929 ;
+    sc:isAccessibleForFree true ;
+    sc:license "CECILL-2.1" ;
+    sc:name "met4j" ;
+    sc:softwareHelp <https://forgemia.inra.fr/metexplore/met4j> ;
+    sc:softwareVersion "1.0.1" ;
+    sc:url "https://forgemia.inra.fr/metexplore/met4j" .
+
 <https://bio.tools/meta> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0160 ;
@@ -293208,7 +303838,7 @@ MESSI (Mixture of Experts for Spatial Signaling genes Identification) is a predi
     biotools:primaryContact "Enrique Blanco" .
 
 <https://bio.tools/meta-align> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0160,
@@ -293223,26 +303853,8 @@ MESSI (Mixture of Experts for Spatial Signaling genes Identification) is a predi
     sc:name "Meta-Align" ;
     sc:url "https://github.com/shravan-repos/Metaalign" .
 
-<https://bio.tools/meta-analysis_rare_variant> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3305,
-        edam:topic_3517,
-        edam:topic_3673,
-        edam:topic_3676 ;
-    sc:citation <https://doi.org/10.1002/GEPI.22273>,
-        "pubmed:31830326" ;
-    sc:description """An adaptive test for meta-analysis of rare variant association studies.
-
-Single genome-wide studies may be underpowered to detect trait-associated rare variants with moderate or weak effect sizes. As a viable alternative, meta-analysis is widely used to increase power by combining different studies. The power of meta-analysis critically depends on the underlying association patterns and heterogeneity levels, which are unknown and vary from locus to locus. However, existing methods mainly focus on one or only a few combinations of the association pattern and heterogeneity level, thus may lose power in many situations. To address this issue, we propose a general and unified framework by combining a class of tests including and beyond some existing ones, leading to high power across a wide range of scenarios.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'aSPUmeta'""" ;
-    sc:featureList edam:operation_3196,
-        edam:operation_3435,
-        edam:operation_3791 ;
-    sc:name "meta-analysis rare variant" ;
-    sc:url "https://github.com/ytzhong/metaRV" .
-
 <https://bio.tools/meta-basic> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3542 ;
     sc:citation "pubmed:15215454" ;
@@ -293260,7 +303872,7 @@ Single genome-wide studies may be underpowered to detect trait-associated rare v
         "Leszek Rychlewski" .
 
 <https://bio.tools/meta-fish-lib> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0160,
@@ -293283,18 +303895,18 @@ Single genome-wide studies may be underpowered to detect trait-associated rare v
 
 <https://bio.tools/meta-gecko> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1234" ;
-            sc:name "Sequence set (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1234" ],
+            sc:additionalType "http://edamontology.org/data_1234" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence set (nucleic acid)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1234" ;
-            sc:name "Sequence set (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1234" ] ;
+            sc:additionalType "http://edamontology.org/data_1234" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence set (nucleic acid)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1872" ;
-            sc:name "Taxonomic classification" ;
-            sc:sameAs "http://edamontology.org/data_1872" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1872" ;
+            sc:encodingFormat "http://edamontology.org/format_2333" ;
+            sc:name "Taxonomic classification" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_3174 ;
@@ -293314,7 +303926,7 @@ Single genome-wide studies may be underpowered to detect trait-associated rare v
     biotools:primaryContact "Esteban Pérez-Wohlfeil" .
 
 <https://bio.tools/meta-i6ma> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_0780,
@@ -293334,7 +303946,7 @@ DNA N6-Methyladenine Site predictor.""" ;
     sc:url "http://kurata14.bio.kyutech.ac.jp/Meta-i6mA/" .
 
 <https://bio.tools/meta-ipvp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_2229,
@@ -293353,7 +303965,7 @@ In this work, we developed a novel PVP predictor named PVPred-SCM which is an ef
     sc:url "http://camt.pythonanywhere.com/Meta-iPVP" .
 
 <https://bio.tools/meta-meme> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0160,
@@ -293373,16 +303985,39 @@ In this work, we developed a novel PVP predictor named PVPred-SCM which is an ef
     sc:url "http://metameme.sdsc.edu/" ;
     biotools:primaryContact "Grundy W. N." .
 
+<https://bio.tools/meta-nanosim> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0196,
+        edam:topic_3174,
+        edam:topic_3308,
+        edam:topic_3512,
+        edam:topic_3837 ;
+    sc:citation <https://doi.org/10.1101/2021.11.19.469328> ;
+    sc:description "Characterization and simulation of metagenomic nanopore sequencing data with Meta-NanoSim." ;
+    sc:featureList edam:operation_0310,
+        edam:operation_0335,
+        edam:operation_3185,
+        edam:operation_3472,
+        edam:operation_3799 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "Meta-NanoSim" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/bcgsc/NanoSim" .
+
 <https://bio.tools/meta-pipe> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0925" ;
-            sc:name "Sequence assembly" ;
-            sc:sameAs "http://edamontology.org/data_0925" ] ;
+            sc:additionalType "http://edamontology.org/data_0925" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence assembly" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Protein features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0736,
@@ -293412,7 +304047,7 @@ In this work, we developed a novel PVP predictor named PVPred-SCM which is an ef
         "Erik Hjerde" .
 
 <https://bio.tools/meta-prism> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0780,
         edam:topic_3174,
@@ -293432,18 +304067,18 @@ Meta-Prism aims to conduct quick query in large-scale metagenomics database. The
 
 <https://bio.tools/meta-snp> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2209" ;
-            sc:name "Mutation ID" ;
-            sc:sameAs "http://edamontology.org/data_2209" ],
+            sc:additionalType "http://edamontology.org/data_2974" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence (raw)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2974" ;
-            sc:name "Protein sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_2974" ] ;
+            sc:additionalType "http://edamontology.org/data_2209" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Mutation ID" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1622" ;
-            sc:name "Disease report" ;
-            sc:sameAs "http://edamontology.org/data_1622" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1622" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Disease report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0123,
         edam:topic_0634 ;
@@ -293463,7 +304098,7 @@ Meta-Prism aims to conduct quick query in large-scale metagenomics database. The
     biotools:primaryContact <http://orcid.org/0000-0002-2323-0963> .
 
 <https://bio.tools/meta-storms> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0610,
@@ -293479,7 +304114,7 @@ Meta-Prism aims to conduct quick query in large-scale metagenomics database. The
     biotools:primaryContact "Su, Xiaoquan" .
 
 <https://bio.tools/metaFALCON> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0593,
         edam:topic_3315,
@@ -293498,38 +304133,38 @@ Meta-Prism aims to conduct quick query in large-scale metagenomics database. The
 
 <https://bio.tools/metaQuantome> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ],
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Peptide identification" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ],
+            sc:additionalType "http://edamontology.org/data_1872" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Taxonomic classification" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1011" ;
-            sc:name "EC number" ;
-            sc:sameAs "http://edamontology.org/data_1011" ],
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Expression data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2583" ;
-            sc:name "GO concept ID (molecular function)" ;
-            sc:sameAs "http://edamontology.org/data_2583" ],
+            sc:additionalType "http://edamontology.org/data_1011" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "EC number" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1872" ;
-            sc:name "Taxonomic classification" ;
-            sc:sameAs "http://edamontology.org/data_1872" ] ;
+            sc:additionalType "http://edamontology.org/data_2583" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "GO concept ID (molecular function)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3028" ;
-            sc:name "Taxonomy" ;
-            sc:sameAs "http://edamontology.org/data_3028" ],
+            sc:additionalType "http://edamontology.org/data_2583" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "GO concept ID (molecular function)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ],
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Expression data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2583" ;
-            sc:name "GO concept ID (molecular function)" ;
-            sc:sameAs "http://edamontology.org/data_2583" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3028" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Taxonomy" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3174,
@@ -293557,7 +304192,7 @@ Meta-Prism aims to conduct quick query in large-scale metagenomics database. The
     sc:url "https://github.com/galaxyproteomics/metaquantome" .
 
 <https://bio.tools/metaRbolomics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0153,
         edam:topic_0593,
@@ -293572,7 +304207,7 @@ Meta-Prism aims to conduct quick query in large-scale metagenomics database. The
     sc:url "http://rformassspectrometry.github.io/metaRbolomics-book" .
 
 <https://bio.tools/metaSPARSim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0659,
@@ -293597,7 +304232,7 @@ Patuzzi I., Baruzzo G., Losasso C., Ricci A., Di Camillo B. "metaSPARSim: a 16S
     sc:url "http://sysbiobig.dei.unipd.it/?q=Software#metaSPARSimand" .
 
 <https://bio.tools/metaadedb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3336,
@@ -293615,7 +304250,7 @@ The new version consists of 744,709 drug-ADE associations between 8,498 compound
     sc:url "http://lmmd.ecust.edu.cn/metaadedb/" .
 
 <https://bio.tools/metaarray> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -293635,7 +304270,7 @@ The new version consists of 744,709 drug-ADE associations between 8,498 compound
     biotools:primaryContact "Hyungwon Choi" .
 
 <https://bio.tools/metab> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0602,
@@ -293657,7 +304292,7 @@ The new version consists of 744,709 drug-ADE associations between 8,498 compound
     biotools:primaryContact "Raphael Aggio" .
 
 <https://bio.tools/metabar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_0632,
@@ -293677,7 +304312,7 @@ This package can be easily used in combination with others R packages commonly u
     sc:url "https://metabarfactory.github.io/metabaR" .
 
 <https://bio.tools/metabase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0621,
@@ -293697,7 +304332,7 @@ This package can be easily used in combination with others R packages commonly u
     biotools:primaryContact "Dan M. Bolser" .
 
 <https://bio.tools/metabcc-lr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3168,
@@ -293716,7 +304351,7 @@ This package can be easily used in combination with others R packages commonly u
     sc:url "https://github.com/anuradhawick/MetaBCC-LR" .
 
 <https://bio.tools/metabcombiner> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -293734,7 +304369,7 @@ This package can be easily used in combination with others R packages commonly u
         <https://orcid.org/0000-0001-7388-8520> .
 
 <https://bio.tools/metabin> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0637,
         edam:topic_3168,
@@ -293751,7 +304386,7 @@ This package can be easily used in combination with others R packages commonly u
     sc:url "http://metabin.riken.jp/application" .
 
 <https://bio.tools/metabinner> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0769,
@@ -293771,7 +304406,7 @@ This package can be easily used in combination with others R packages commonly u
     sc:url "https://github.com/ziyewang/MetaBinner" .
 
 <https://bio.tools/metabiome> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0218,
         edam:topic_0821,
@@ -293792,7 +304427,7 @@ This package can be easily used in combination with others R packages commonly u
     biotools:primaryContact "Contact Form" .
 
 <https://bio.tools/metabnorm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2259,
         edam:topic_3172 ;
@@ -293808,7 +304443,7 @@ This package can be easily used in combination with others R packages commonly u
     biotools:primaryContact "Jauhiainen A" .
 
 <https://bio.tools/metaboanalyst> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3172,
@@ -293828,7 +304463,7 @@ This package can be easily used in combination with others R packages commonly u
     sc:url "http://www.metaboanalyst.ca" .
 
 <https://bio.tools/metabocraft> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0602,
@@ -293845,7 +304480,7 @@ This package can be easily used in combination with others R packages commonly u
     biotools:primaryContact "Karl Burgess" .
 
 <https://bio.tools/metabodiff> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0797,
@@ -293863,7 +304498,7 @@ This package can be easily used in combination with others R packages commonly u
     biotools:primaryContact "Andreas Mock" .
 
 <https://bio.tools/metabokit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0153,
         edam:topic_0154,
@@ -293882,7 +304517,7 @@ We have developed MetaboKit, a comprehensive software package for compound ident
     sc:url "https://github.com/MetaboKit" .
 
 <https://bio.tools/metabolic> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3407,
@@ -293896,7 +304531,7 @@ We have developed MetaboKit, a comprehensive software package for compound ident
     sc:url "https://github.com/AnantharamanLab/METABOLIC" .
 
 <https://bio.tools/metabolic_network_sgl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0625,
@@ -293914,7 +304549,7 @@ We have developed MetaboKit, a comprehensive software package for compound ident
         "Satya Swarup Sama" .
 
 <https://bio.tools/metabolic_pathway_prediction> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0209,
@@ -293936,7 +304571,7 @@ Baranwal, Mayank, Abram Magner, Paolo Elvati, Jacob Saldinger, Angela Violi, and
     sc:url "https://github.com/baranwa2/MetabolicPathwayPrediction" .
 
 <https://bio.tools/metabolicatlas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2259 ;
     sc:citation <https://doi.org/10.1126/scisignal.aaz1482>,
@@ -293955,7 +304590,7 @@ Baranwal, Mayank, Abram Magner, Paolo Elvati, Jacob Saldinger, Angela Violi, and
     sc:url "https://metabolicatlas.org" .
 
 <https://bio.tools/metabolights> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_3172 ;
     sc:citation <https://doi.org/10.1093/nar/gks1004> ;
@@ -293970,7 +304605,7 @@ Baranwal, Mayank, Abram Magner, Paolo Elvati, Jacob Saldinger, Angela Violi, and
     sc:url "http://www.ebi.ac.uk/metabolights/" .
 
 <https://bio.tools/metabolisHMM> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0160,
@@ -294000,7 +304635,7 @@ metabolisHMM is a tool for visualizing the distributions and evolutionary histor
     sc:url "https://github.com/elizabethmcd/metabolisHMM" .
 
 <https://bio.tools/metabolite-investigator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
@@ -294020,7 +304655,7 @@ This is a Shiny-App with the aim of facilitating association and covariate selec
     sc:url "https://apps.health-atlas.de/metabolite-investigator/" .
 
 <https://bio.tools/metabolite_autoplotter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0102,
@@ -294037,7 +304672,7 @@ This is a Shiny-App with the aim of facilitating association and covariate selec
     sc:url "https://mpietzke.shinyapps.io/autoplotter" .
 
 <https://bio.tools/metabolitedetector> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3172 ;
@@ -294052,8 +304687,25 @@ This is a Shiny-App with the aim of facilitating association and covariate selec
     biotools:primaryContact "K. Hiller - Software Developer",
         "Nils koschnitzki - Administrator" .
 
+<https://bio.tools/metabolizer> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0602 ;
+    sc:citation <https://doi.org/10.1038/s41540-019-0087-2>,
+        "pmcid:PMC6397295",
+        "pubmed:30854222" ;
+    sc:description "Metabolizer is a web tool for analysis of modular architecture of metabolic pathways using transcriptomic data. Metabolizer calculates impact of modules on production of metabolites. These modules are conserved part of metabolism which starts with substrate(s) and ends with a product." ;
+    sc:isAccessibleForFree true ;
+    sc:name "Metabolizer" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <http://metabolizer.babelomics.org/doc/doku.php> ;
+    sc:softwareVersion "1.7.0" ;
+    sc:url "http://metabolizer.babelomics.org/" .
+
 <https://bio.tools/metabolome_searcher> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_2259 ;
@@ -294066,7 +304718,7 @@ This is a Shiny-App with the aim of facilitating association and covariate selec
     sc:url "http://procyc.westcent.usu.edu/cgi-bin/MetaboSearcher.cgi" .
 
 <https://bio.tools/metabolomexchange> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_3172 ;
     sc:description "An international data aggregation and notification service for metabolomics." ;
@@ -294080,7 +304732,7 @@ This is a Shiny-App with the aim of facilitating association and covariate selec
     sc:url "http://metabolomexchange.org" .
 
 <https://bio.tools/metabolomicstools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_3172,
         edam:topic_3407 ;
@@ -294098,7 +304750,7 @@ This is a Shiny-App with the aim of facilitating association and covariate selec
     biotools:primaryContact "Christoph Steinbeck" .
 
 <https://bio.tools/metabomaps> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -294122,7 +304774,7 @@ MetaboMAPS is a web project for manipulating metabolic pathways in SVG format. M
     sc:url "https://metabomaps.brenda-enzymes.org" .
 
 <https://bio.tools/metabominer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0593,
         edam:topic_3172,
@@ -294139,7 +304791,7 @@ MetaboMAPS is a web project for manipulating metabolic pathways in SVG format. M
     biotools:primaryContact "Jianguo Xia" .
 
 <https://bio.tools/metabomxtr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2269 ;
@@ -294157,7 +304809,7 @@ MetaboMAPS is a web project for manipulating metabolic pathways in SVG format. M
     biotools:primaryContact "Michael Nodzenski" .
 
 <https://bio.tools/metabonetworks> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3172,
@@ -294174,7 +304826,7 @@ MetaboMAPS is a web project for manipulating metabolic pathways in SVG format. M
     biotools:primaryContact "Joram Posma" .
 
 <https://bio.tools/metaboprep> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0769,
@@ -294193,7 +304845,7 @@ MetaboMAPS is a web project for manipulating metabolic pathways in SVG format. M
     sc:url "https://github.com/MRCIEU/metaboprep" .
 
 <https://bio.tools/metabosearch> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3172,
         edam:topic_3489 ;
@@ -294209,7 +304861,7 @@ MetaboMAPS is a web project for manipulating metabolic pathways in SVG format. M
     biotools:primaryContact "Support" .
 
 <https://bio.tools/metabosignal> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0602,
@@ -294232,7 +304884,7 @@ MetaboMAPS is a web project for manipulating metabolic pathways in SVG format. M
         "Rafael Ayala" .
 
 <https://bio.tools/metaboverse> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -294255,7 +304907,7 @@ Integrating multi- or single-omic metabolic data upon the metabolic network can
     sc:url "https://github.com/Metaboverse/" .
 
 <https://bio.tools/metabridge> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0154,
@@ -294274,7 +304926,7 @@ Integrating multi- or single-omic metabolic data upon the metabolic network can
     biotools:primaryContact "Robert E W Hancock" .
 
 <https://bio.tools/metacachespark> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0780,
@@ -294292,7 +304944,7 @@ Integrating multi- or single-omic metabolic data upon the metabolic network can
     sc:url "https://github.com/jmabuin/MetaCacheSpark" .
 
 <https://bio.tools/metacca> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0625,
@@ -294313,7 +304965,7 @@ Integrating multi- or single-omic metabolic data upon the metabolic network can
     biotools:primaryContact <http://orcid.org/0000-0003-1072-8858> .
 
 <https://bio.tools/metachrom> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0625,
@@ -294334,7 +304986,7 @@ MetaChrom is a transfer learning framework that takes advantage of both an exten
     sc:url "https://metachrom.ttic.edu/" .
 
 <https://bio.tools/metaclean> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -294354,7 +305006,7 @@ Detection of Low-Quality Peaks in Untargeted Metabolomics Data.""" ;
     sc:url "https://CRAN.R-project.org/package=MetaClean" .
 
 <https://bio.tools/metacluster> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0157,
         edam:topic_3174,
@@ -294369,7 +305021,7 @@ Detection of Low-Quality Peaks in Untargeted Metabolomics Data.""" ;
     sc:url "http://i.cs.hku.hk/~alse/MetaCluster/index.html" .
 
 <https://bio.tools/metacnv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2640 ;
     sc:citation <https://doi.org/10.21203/RS.2.15757/V2> ;
@@ -294381,7 +305033,7 @@ The majority of copy number callers requires high read coverage data that is oft
     sc:url "https://bitbucket.org/sonnhammergroup/metacnv" .
 
 <https://bio.tools/metacoag> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3168,
@@ -294400,14 +305052,14 @@ The majority of copy number callers requires high read coverage data that is oft
 
 <https://bio.tools/metacoder> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3736" ;
-            sc:name "Ecological data" ;
-            sc:sameAs "http://edamontology.org/data_3736" ] ;
+            sc:additionalType "http://edamontology.org/data_3736" ;
+            sc:encodingFormat "http://edamontology.org/format_3706" ;
+            sc:name "Ecological data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0872" ;
-            sc:name "Phylogenetic tree" ;
-            sc:sameAs "http://edamontology.org/data_0872" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0872" ;
+            sc:encodingFormat "http://edamontology.org/format_2006" ;
+            sc:name "Phylogenetic tree" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0092,
@@ -294428,7 +305080,7 @@ The majority of copy number callers requires high read coverage data that is oft
         "Niklaus J. Grünwald" .
 
 <https://bio.tools/metacomp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_2269,
@@ -294448,7 +305100,7 @@ The majority of copy number callers requires high read coverage data that is oft
         "Peng Zhai" .
 
 <https://bio.tools/metacompass> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0196 ;
@@ -294461,7 +305113,7 @@ The majority of copy number callers requires high read coverage data that is oft
     sc:url "http://metacompass.cbcb.umd.edu/" .
 
 <https://bio.tools/metacram> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0637,
         edam:topic_3168,
@@ -294480,7 +305132,7 @@ The majority of copy number callers requires high read coverage data that is oft
         "Xiejia Zhang" .
 
 <https://bio.tools/metacrop> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0780,
@@ -294505,7 +305157,7 @@ The majority of copy number callers requires high read coverage data that is oft
     biotools:primaryContact "Falk Schreiber" .
 
 <https://bio.tools/metacv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0157,
         edam:topic_3168,
@@ -294518,7 +305170,7 @@ The majority of copy number callers requires high read coverage data that is oft
     sc:url "https://sourceforge.net/projects/metacv/" .
 
 <https://bio.tools/metacyc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0821,
@@ -294540,7 +305192,7 @@ The majority of copy number callers requires high read coverage data that is oft
     biotools:primaryContact "MetaCyc Support" .
 
 <https://bio.tools/metacyto> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2229,
@@ -294559,7 +305211,7 @@ The majority of copy number callers requires high read coverage data that is oft
     biotools:primaryContact "Zicheng Hu" .
 
 <https://bio.tools/metadataset> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Database portal" ;
     sc:applicationSubCategory edam:topic_0610,
@@ -294580,7 +305232,7 @@ Metadataset is a collection of open data from scientific publications.""" ;
     sc:url "http://www.metadataset.com" .
 
 <https://bio.tools/metadbsite> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_3125 ;
@@ -294597,7 +305249,7 @@ Metadataset is a collection of open data from scientific publications.""" ;
     biotools:primaryContact "Dr. Bingding Huang" .
 
 <https://bio.tools/metadea> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0634,
@@ -294617,7 +305269,7 @@ Metadataset is a collection of open data from scientific publications.""" ;
         <https://orcid.org/0000-0003-4128-2561> .
 
 <https://bio.tools/metadiff> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3170 ;
@@ -294632,14 +305284,14 @@ Metadataset is a collection of open data from scientific publications.""" ;
 
 <https://bio.tools/metadisorder> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2886" ;
-            sc:name "Protein sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2886" ] ;
+            sc:additionalType "http://edamontology.org/data_2886" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0896" ;
-            sc:name "Protein report" ;
-            sc:sameAs "http://edamontology.org/data_0896" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0896" ;
+            sc:encodingFormat "http://edamontology.org/format_1964" ;
+            sc:name "Protein report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0091 ;
     sc:citation <https://doi.org/10.1186/1471-2105-13-111> ;
@@ -294655,14 +305307,14 @@ Metadataset is a collection of open data from scientific publications.""" ;
 
 <https://bio.tools/metadyn_view> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0889" ;
-            sc:name "Structural profile" ;
-            sc:sameAs "http://edamontology.org/data_0889" ] ;
+            sc:additionalType "http://edamontology.org/data_0889" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Structural profile" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1636" ;
-            sc:name "Heat map" ;
-            sc:sameAs "http://edamontology.org/data_1636" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1636" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Heat map" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3332 ;
     sc:author "Petr Hosek",
@@ -294685,14 +305337,14 @@ Metadataset is a collection of open data from scientific publications.""" ;
 
 <https://bio.tools/metadynminer> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3870" ;
-            sc:name "Trajectory data" ;
-            sc:sameAs "http://edamontology.org/data_3870" ] ;
+            sc:additionalType "http://edamontology.org/data_3870" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Trajectory data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Image" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_3892 ;
     sc:description "Molecular simulations are slow because the system usually gets stuck in local energy minima. To address this problem, metadynamics uses an artificial bias potential calculated adaptivly during the simulation. Metadynminer is R package for analysis and visualization of metadynamics results, primarily from popular Plumed package." ;
@@ -294714,7 +305366,7 @@ Metadataset is a collection of open data from scientific publications.""" ;
     biotools:primaryContact "Vojtech Spiwok" .
 
 <https://bio.tools/metadynreporter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0176 ;
     sc:description "Metadynreporter is a Galaxy portal that generates a PDF report based on data from metadynamics simulation done in Plumed (https://www.plumed.org/)." ;
@@ -294724,7 +305376,7 @@ Metadataset is a collection of open data from scientific publications.""" ;
     sc:url "http://metadynreporter.cz/" .
 
 <https://bio.tools/metafetcher> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0153,
         edam:topic_0154,
@@ -294743,7 +305395,7 @@ PubChem, Kyoto Encyclopedia of Genes and Genomes (KEGG), and Lipidomics Gateway
     biotools:primaryContact <https://orcid.org/0000-0002-7201-2604> .
 
 <https://bio.tools/metafind> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0593,
         edam:topic_3172 ;
@@ -294758,7 +305410,7 @@ PubChem, Kyoto Encyclopedia of Genes and Genomes (KEGG), and Lipidomics Gateway
     sc:url "http://mlg.ucd.ie/metabol.html" .
 
 <https://bio.tools/metafun> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0634,
@@ -294779,7 +305431,7 @@ PubChem, Kyoto Encyclopedia of Genes and Genomes (KEGG), and Lipidomics Gateway
     sc:url "http://bioinfo.cipf.es/metafun" .
 
 <https://bio.tools/metafunc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0769,
@@ -294799,7 +305451,7 @@ Create the nrgo database for the metafunc workflow.""" ;
     sc:url "https://gitlab.com/schmeierlab/workflows/metafunc.git" .
 
 <https://bio.tools/metafunprimer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0632,
@@ -294823,7 +305475,7 @@ Create the nrgo database for the metafunc workflow.""" ;
     sc:url "https://github.com/jialiu232/MetaFunPrimer_paper_info.git" .
 
 <https://bio.tools/metafusion> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Script" ;
     sc:applicationSubCategory edam:topic_0114,
@@ -294838,7 +305490,7 @@ Create the nrgo database for the metafunc workflow.""" ;
     sc:url "https://github.com/ccmbioinfo/MetaFusion" .
 
 <https://bio.tools/metag> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0637,
@@ -294858,7 +305510,7 @@ Due to file size limitations, the databases can be found here:.""" ;
     sc:url "http://bioinformatics.uni-muenster.de/tools/metag/" .
 
 <https://bio.tools/metagem> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0769,
@@ -294879,7 +305531,7 @@ metaGEM integrates an array of existing bioinformatics and metabolic modeling to
     sc:url "https://github.com/franciscozorrilla/metaGEM" .
 
 <https://bio.tools/metagen> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Plug-in",
         "Script" ;
@@ -294898,7 +305550,7 @@ metaGEM integrates an array of existing bioinformatics and metabolic modeling to
     biotools:primaryContact "Pantelis Bagos" .
 
 <https://bio.tools/metagenassist> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_3174,
         edam:topic_3474 ;
@@ -294917,14 +305569,14 @@ metaGEM integrates an array of existing bioinformatics and metabolic modeling to
 
 <https://bio.tools/metagene> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_3003" ;
+            sc:name "Sequence alignment" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3053 ;
@@ -294943,7 +305595,7 @@ metaGEM integrates an array of existing bioinformatics and metabolic modeling to
     biotools:primaryContact "Charles Joly Beauparlant" .
 
 <https://bio.tools/metageneannotator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0219,
         edam:topic_0621,
@@ -294959,14 +305611,35 @@ metaGEM integrates an array of existing bioinformatics and metabolic modeling to
     sc:url "http://metagene.cb.k.u-tokyo.ac.jp/" ;
     biotools:primaryContact "Hideki Noguchi" .
 
+<https://bio.tools/metagenebank> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0634,
+        edam:topic_3174,
+        edam:topic_3577,
+        edam:topic_3697,
+        edam:topic_3837 ;
+    sc:citation <https://doi.org/10.1186/S12866-021-02321-Z>,
+        "pmcid:PMC8485520",
+        "pubmed:34592929" ;
+    sc:description "A standardized database to study deep sequenced metagenomic data from human fecal specimen." ;
+    sc:featureList edam:operation_0335,
+        edam:operation_2421,
+        edam:operation_3431,
+        edam:operation_3695,
+        edam:operation_3891 ;
+    sc:name "MetaGeneBank" ;
+    sc:url "http://tcm.zju.edu.cn/mgb" .
+
 <https://bio.tools/metagenemark> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "MetaGeneMark is a tool for gene prediction in metagenomes, utilizing metagenome parameters and gene prediction." ;
     sc:name "MetaGeneMark" ;
     sc:url "http://exon.gatech.edu/GeneMark/meta_gmhmmp.cgi" .
 
 <https://bio.tools/metagenesense> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0769,
@@ -294984,7 +305657,7 @@ metaGEM integrates an array of existing bioinformatics and metabolic modeling to
     sc:url "https://github.com/pgp-pasteur-fr/MetaGenSense" .
 
 <https://bio.tools/metagenome-kin> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3174 ;
     sc:citation <https://doi.org/10.1186/s12876-015-0330-2> ;
@@ -294998,30 +305671,30 @@ metaGEM integrates an array of existing bioinformatics and metabolic modeling to
 
 <https://bio.tools/metagenomefeatures> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3028" ;
-            sc:name "Taxonomy" ;
-            sc:sameAs "http://edamontology.org/data_3028" ],
+            sc:additionalType "http://edamontology.org/data_3113" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Sample annotation" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3567" ;
-            sc:name "Reference sample report" ;
-            sc:sameAs "http://edamontology.org/data_3567" ],
+            sc:additionalType "http://edamontology.org/data_3028" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Taxonomy" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3113" ;
-            sc:name "Sample annotation" ;
-            sc:sameAs "http://edamontology.org/data_3113" ] ;
+            sc:additionalType "http://edamontology.org/data_3567" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Reference sample report" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3028" ;
-            sc:name "Taxonomy" ;
-            sc:sameAs "http://edamontology.org/data_3028" ],
+            sc:additionalType "http://edamontology.org/data_3567" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Reference sample report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3567" ;
-            sc:name "Reference sample report" ;
-            sc:sameAs "http://edamontology.org/data_3567" ],
+            sc:additionalType "http://edamontology.org/data_3028" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Taxonomy" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3113" ;
-            sc:name "Sample annotation" ;
-            sc:sameAs "http://edamontology.org/data_3113" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3113" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Sample annotation" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0637,
@@ -295042,22 +305715,22 @@ metaGEM integrates an array of existing bioinformatics and metabolic modeling to
 
 <https://bio.tools/metagenomeseq> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3028" ;
-            sc:name "Taxonomy" ;
-            sc:sameAs "http://edamontology.org/data_3028" ],
+            sc:additionalType "http://edamontology.org/data_3028" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Taxonomy" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Report" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ],
+            sc:additionalType "http://edamontology.org/data_1669" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "P-value" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1669" ;
-            sc:name "P-value" ;
-            sc:sameAs "http://edamontology.org/data_1669" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3168,
@@ -295076,13 +305749,8 @@ metaGEM integrates an array of existing bioinformatics and metabolic modeling to
     sc:url "http://bioconductor.org/packages/release/bioc/html/metagenomeSeq.html" ;
     biotools:primaryContact "Joseph N. Paulson" .
 
-<https://bio.tools/metagenomic_shotgun_sequencing> a sc:SoftwareApplication ;
-    sc:description "As an experienced provider of NGS services and a partner of Illumina, CD Genomics is committed to offering qualified metagenomic shotgun sequencing service. Shotgun metagenomic sequencing allows the taxonomic and biological functional characterization of polymicrobial communities in a cost-effective and time-efficient manner. We consistently deliver high-quality data with flexibility and bioinformatics analysis based on customers’ requirements." ;
-    sc:name "Metagenomic Shotgun Sequencing" ;
-    sc:url "https://www.cd-genomics.com/Metagenomic-Shotgun-Sequencing.html" .
-
 <https://bio.tools/metagenonets> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0769,
@@ -295101,23 +305769,33 @@ Microbial association networks are frequently used for understanding and compari
     sc:url "https://web.rniapps.net/metagenonets" .
 
 <https://bio.tools/metagenyo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_0920" ;
+            sc:encodingFormat "http://edamontology.org/format_3468" ;
+            sc:name "Genotype/phenotype report" ] ;
+    bsc:output [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_0920" ;
+            sc:name "Genotype/phenotype report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
-        edam:topic_2269 ;
+        edam:topic_0625,
+        edam:topic_2269,
+        edam:topic_2885 ;
+    sc:author "Jordi Martorell-Marugán" ;
     sc:citation <https://doi.org/10.1186/s12859-017-1990-4> ;
-    sc:description "Meta-analysis of genetic association studies." ;
-    sc:featureList edam:operation_3439 ;
+    sc:description "MetaGenyo is a simple, ready-to-use software which has been designed to perform meta-analysis of genetic association studies." ;
+    sc:featureList edam:operation_2403 ;
+    sc:isAccessibleForFree true ;
     sc:name "MetaGenyo" ;
     sc:operatingSystem "Linux",
         "Mac",
         "Windows" ;
-    sc:softwareHelp <http://bioinfo.genyo.es/metagenyo/#tab-3045-9> ;
-    sc:url "http://bioinfo.genyo.es/metagenyo/" ;
-    biotools:primaryContact "Pedro Carmona-Saez" .
+    sc:url "https://metagenyo.genyo.es" ;
+    biotools:primaryContact <https://orcid.org/0000-0002-6173-7255> .
 
 <https://bio.tools/metagraph> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0196,
@@ -295140,7 +305818,7 @@ The MetaGraph framework allows for indexing and analysis of very large biologica
     sc:url "https://metagraph.ethz.ch" .
 
 <https://bio.tools/metagun> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3174,
@@ -295153,8 +305831,50 @@ The MetaGraph framework allows for indexing and analysis of very large biologica
     sc:softwareHelp <http://cqb.pku.edu.cn/ZhuLab/MetaGUN/README> ;
     sc:url "http://cqb.pku.edu.cn/ZhuLab/MetaGUN/index.html" .
 
+<https://bio.tools/metagwgs> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "DNA sequence" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "DNA sequence" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "DNA sequence" ] ;
+    bsc:output [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_3028" ;
+            sc:encodingFormat "http://edamontology.org/format_1915" ;
+            sc:name "Taxonomy" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "DNA sequence" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_3917" ;
+            sc:encodingFormat "http://edamontology.org/format_1915" ;
+            sc:name "Count matrix" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workflow" ;
+    sc:applicationSubCategory edam:topic_3174 ;
+    sc:description "metagWGS is a workflow dedicated to the analysis of metagenomic data. It allows assembly, taxonomic annotation, and functional annotation of predicted genes. Since release 2.3, binning step with the possibility of cross-alignment is included. It has been developed in collaboration with several CATI BIOS4biol agents. Funded by Antiselfish Project (Labex Ecofect), ExpoMicoPig project (France Futur elevage) and SeqOccIn project (CPER - Occitanie Toulouse / FEDER), ATB_Biofilm funded by PNREST Anses, France genomique (ANR-10-INBS-09-08) and Resalab Ouest." ;
+    sc:featureList edam:operation_0524,
+        edam:operation_3460,
+        edam:operation_3672 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "metagWGS" ;
+    sc:operatingSystem "Linux" ;
+    sc:provider "GenoToul bioinformatics facility" ;
+    sc:softwareHelp <https://forgemia.inra.fr/genotoul-bioinfo/metagwgs/-/blob/master/README.md> ;
+    sc:softwareVersion "2.3" ;
+    sc:url "https://forgemia.inra.fr/genotoul-bioinfo/metagwgs" ;
+    biotools:primaryContact <https://orcid.org/0000-0001-5054-7731> .
+
 <https://bio.tools/metagxovarian> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -295172,7 +305892,7 @@ The MetaGraph framework allows for indexing and analysis of very large biologica
     biotools:primaryContact "Michael Zon" .
 
 <https://bio.tools/metahdep> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -295191,7 +305911,7 @@ The MetaGraph framework allows for indexing and analysis of very large biologica
     biotools:primaryContact "John R. Stevens" .
 
 <https://bio.tools/metaheuristic-reactive-model> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3305,
@@ -295209,7 +305929,7 @@ The MetaGraph framework allows for indexing and analysis of very large biologica
     biotools:primaryContact "Erik" .
 
 <https://bio.tools/metaimprint> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3053,
@@ -295228,7 +305948,7 @@ The MetaGraph framework allows for indexing and analysis of very large biologica
     biotools:primaryContact "Contact form" .
 
 <https://bio.tools/metainter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3053,
@@ -295243,7 +305963,7 @@ The MetaGraph framework allows for indexing and analysis of very large biologica
     sc:url "http://metainter.meb.uni-bonn.de/" .
 
 <https://bio.tools/metakallisto> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_1317,
         edam:topic_3170,
@@ -295259,7 +305979,7 @@ The MetaGraph framework allows for indexing and analysis of very large biologica
     biotools:primaryContact "L. Pachter" .
 
 <https://bio.tools/metal> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3517 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btq340> ;
@@ -295274,7 +305994,7 @@ The MetaGraph framework allows for indexing and analysis of very large biologica
     sc:url "http://genome.sph.umich.edu/wiki/METAL_Program" .
 
 <https://bio.tools/metalaffa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3174,
@@ -295297,7 +306017,7 @@ MetaLAFFA is a pipeline for annotating shotgun metagenomic data with abundances
     sc:url "https://github.com/borenstein-lab/MetaLAFFA" .
 
 <https://bio.tools/metaldetector> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3125,
@@ -295320,7 +306040,7 @@ MetaLAFFA is a pipeline for annotating shotgun metagenomic data with abundances
     biotools:primaryContact "Metal Detector v2.0 Support" .
 
 <https://bio.tools/metalign> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3174,
         edam:topic_3303,
@@ -295338,7 +306058,7 @@ Metalign is a method for estimating the taxonomic composition and relative abund
     sc:url "https://github.com/nlapier2/Metalign" .
 
 <https://bio.tools/metalims> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0607,
         edam:topic_3071,
@@ -295354,8 +306074,82 @@ Metalign is a method for estimating the taxonomic composition and relative abund
     sc:url "https://github.com/cheinle/MetaLIMS" ;
     biotools:primaryContact "Cassie Heinle" .
 
+<https://bio.tools/metaline> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
+            sc:name "Sequence alignment" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Sequence record" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Sequence alignment" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Sequence record" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_3028" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Taxonomy" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Sequence record" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_3028" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Taxonomy" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
+            sc:name "Sequence alignment" ] ;
+    bsc:output [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3579" ;
+            sc:name "Plot" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_3028" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Taxonomy" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Sequence record" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
+            sc:name "Sequence alignment" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Plot" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Sequence alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workflow" ;
+    sc:applicationSubCategory edam:topic_0637,
+        edam:topic_3174,
+        edam:topic_3301 ;
+    sc:description "metagenomics Taxonomic Assignation pipeline in Snakemake" ;
+    sc:featureList edam:operation_0337,
+        edam:operation_0496,
+        edam:operation_3192,
+        edam:operation_3211,
+        edam:operation_3218,
+        edam:operation_3434,
+        edam:operation_3460 ;
+    sc:license "GPL-2.0" ;
+    sc:name "meTAline" ;
+    sc:url "https://github.com/Dfupa/meTAline" .
+
 <https://bio.tools/metalionrna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0099,
@@ -295372,14 +306166,13 @@ Metalign is a method for estimating the taxonomic composition and relative abund
 
 <https://bio.tools/metalizer> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ] ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein structure" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0906" ;
-            sc:name "Protein interaction data" ;
-            sc:sameAs "http://edamontology.org/data_0906" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0906" ;
+            sc:name "Protein interaction data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_3534 ;
@@ -295394,10 +306187,10 @@ Metalign is a method for estimating the taxonomic composition and relative abund
 
 <https://bio.tools/metalogo> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0081,
@@ -295423,10 +306216,10 @@ Metalign is a method for estimating the taxonomic composition and relative abund
 
 <https://bio.tools/metalpdb> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1127" ;
-            sc:name "PDB ID" ;
-            sc:sameAs "http://edamontology.org/data_1127" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1127" ;
+            sc:encodingFormat "http://edamontology.org/format_2065" ;
+            sc:name "PDB ID" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_3292 ;
     sc:citation <https://doi.org/10.1093/nar/gks1063> ;
@@ -295443,10 +306236,10 @@ Metalign is a method for estimating the taxonomic composition and relative abund
 
 <https://bio.tools/metals2> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein structure" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_3292 ;
@@ -295464,7 +306257,7 @@ Metalign is a method for estimating the taxonomic composition and relative abund
     biotools:primaryContact "Antonio Rosato" .
 
 <https://bio.tools/metamapr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0821,
@@ -295481,7 +306274,7 @@ Metalign is a method for estimating the taxonomic composition and relative abund
     sc:url "http://dgrapov.github.io/MetaMapR/" .
 
 <https://bio.tools/metamaps> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0157,
         edam:topic_3174 ;
@@ -295493,8 +306286,32 @@ Metalign is a method for estimating the taxonomic composition and relative abund
     sc:url "https://github.com/DiltheyLab/MetaMaps" ;
     biotools:primaryContact <https://orcid.org/0000-0002-6394-4581> .
 
+<https://bio.tools/metamdb> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_0154,
+        edam:topic_0602,
+        edam:topic_3407,
+        edam:topic_3955 ;
+    sc:citation <https://doi.org/10.3390/metabo12020122>,
+        "pmcid:PMC8878866",
+        "pubmed:35208198" ;
+    sc:description "MetAMDB is a software/database for the analysis of metabolic models and specifically the work with atom mappings." ;
+    sc:featureList edam:operation_2421,
+        edam:operation_2429,
+        edam:operation_3660 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "MetAMDB" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://metamdb.tu-bs.de/" .
+
 <https://bio.tools/metameth> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -295513,7 +306330,7 @@ EWAS meta-analysis of age in human skeletal muscle.""" ;
     sc:url "https://sarah-voisin.shinyapps.io/MetaMeth/" .
 
 <https://bio.tools/metamhc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2830 ;
@@ -295534,7 +306351,7 @@ EWAS meta-analysis of age in human skeletal muscle.""" ;
     biotools:primaryContact "Cheng Luo" .
 
 <https://bio.tools/metamic> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3174,
@@ -295553,7 +306370,7 @@ EWAS meta-analysis of age in human skeletal muscle.""" ;
     sc:url "https://github.com/ZhaoXM-Lab/metaMIC" .
 
 <https://bio.tools/metamicrobiomeR> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3399,
         edam:topic_3410,
@@ -295572,7 +306389,7 @@ EWAS meta-analysis of age in human skeletal muscle.""" ;
     biotools:primaryContact "Nhan Thi Ho" .
 
 <https://bio.tools/metamis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3056,
         edam:topic_3174,
@@ -295592,7 +306409,7 @@ EWAS meta-analysis of age in human skeletal muscle.""" ;
     biotools:primaryContact "Support" .
 
 <https://bio.tools/metamix> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3174,
@@ -295609,7 +306426,7 @@ EWAS meta-analysis of age in human skeletal muscle.""" ;
     biotools:primaryContact "Sofia Morfopoulou" .
 
 <https://bio.tools/metamorf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Database portal",
         "Web application" ;
@@ -295629,7 +306446,7 @@ MetamORF: A repository of unique short Open Reading Frames identified by both ex
     sc:url "http://metamorf.hb.univ-amu.fr/" .
 
 <https://bio.tools/metamos> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3168 ;
@@ -295646,7 +306463,7 @@ MetamORF: A repository of unique short Open Reading Frames identified by both ex
     sc:url "http://cbcb.umd.edu/software/metAMOS" .
 
 <https://bio.tools/metams> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3172 ;
@@ -295665,7 +306482,7 @@ MetamORF: A repository of unique short Open Reading Frames identified by both ex
     biotools:primaryContact <http://orcid.org/0000-0002-8798-5599> .
 
 <https://bio.tools/metamvgl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3174,
@@ -295680,14 +306497,14 @@ MetamORF: A repository of unique short Open Reading Frames identified by both ex
 
 <https://bio.tools/metamylo> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1233" ;
-            sc:name "Sequence set (protein)" ;
-            sc:sameAs "http://edamontology.org/data_1233" ] ;
+            sc:additionalType "http://edamontology.org/data_1233" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence set (protein)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Protein features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3325,
         edam:topic_3510 ;
@@ -295708,7 +306525,7 @@ MetamORF: A repository of unique short Open Reading Frames identified by both ex
     biotools:primaryContact "Christian Delamarche" .
 
 <https://bio.tools/metan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0780,
@@ -295724,7 +306541,7 @@ metan (multi-environment trials analysis) provides useful functions for analyzin
     sc:url "https://tiagoolivoto.github.io/metan/" .
 
 <https://bio.tools/metaneighbor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3308 ;
@@ -295742,7 +306559,7 @@ metan (multi-environment trials analysis) provides useful functions for analyzin
     biotools:primaryContact "Manthan Shah" .
 
 <https://bio.tools/metanet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2259,
@@ -295758,7 +306575,7 @@ metan (multi-environment trials analysis) provides useful functions for analyzin
     biotools:primaryContact "Zhenqiu Liu" .
 
 <https://bio.tools/metanetc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3382,
@@ -295778,7 +306595,7 @@ This is a toolbox to convert .mat files on MetaNet into GDS files.""" ;
     sc:url "http://metanet.stanford.edu" .
 
 <https://bio.tools/metanetx> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
@@ -295805,7 +306622,7 @@ This is a toolbox to convert .mat files on MetaNet into GDS files.""" ;
     biotools:primaryContact "MetaNetX Support" .
 
 <https://bio.tools/metano> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2259 ;
@@ -295823,7 +306640,7 @@ This is a toolbox to convert .mat files on MetaNet into GDS files.""" ;
     biotools:primaryContact "Support" .
 
 <https://bio.tools/metaomgraph> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_1775,
@@ -295840,7 +306657,7 @@ This is a toolbox to convert .mat files on MetaNet into GDS files.""" ;
     sc:url "http://www.metnetdb.org/MetNet_MetaOmGraph.htm" .
 
 <https://bio.tools/metap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_3172 ;
@@ -295858,7 +306675,7 @@ This is a toolbox to convert .mat files on MetaNet into GDS files.""" ;
     biotools:primaryContact "Support" .
 
 <https://bio.tools/metapass> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0202,
@@ -295874,7 +306691,7 @@ This is a toolbox to convert .mat files on MetaNet into GDS files.""" ;
     sc:url "http://www.way2drug.com/metapass" .
 
 <https://bio.tools/metapath> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602 ;
@@ -295888,7 +306705,7 @@ This is a toolbox to convert .mat files on MetaNet into GDS files.""" ;
     biotools:primaryContact "George C. Tseng" .
 
 <https://bio.tools/metapath_online> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0602,
@@ -295913,7 +306730,7 @@ This is a toolbox to convert .mat files on MetaNet into GDS files.""" ;
     biotools:primaryContact "Thomas Handorf" .
 
 <https://bio.tools/metapathways> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_0637,
@@ -295929,7 +306746,7 @@ This is a toolbox to convert .mat files on MetaNet into GDS files.""" ;
     sc:url "http://hallam.microbiology.ubc.ca/MetaPathways/" .
 
 <https://bio.tools/metapepseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3168,
@@ -295944,7 +306761,7 @@ This is a toolbox to convert .mat files on MetaNet into GDS files.""" ;
     sc:url "http://sourceforge.net/projects/metapepseq/" .
 
 <https://bio.tools/metaphat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0153,
         edam:topic_0625,
@@ -295964,7 +306781,7 @@ MetaPhat is an open sourced program to detect best subset traits on lead multiva
     sc:url "https://sourceforge.net/projects/meta-pheno-association-tracer" .
 
 <https://bio.tools/metaphlan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0194,
@@ -295982,7 +306799,7 @@ MetaPhat is an open sourced program to detect best subset traits on lead multiva
     sc:url "http://huttenhower.sph.harvard.edu/metaphlan" .
 
 <https://bio.tools/metaphors> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0084,
@@ -296003,12 +306820,11 @@ MetaPhat is an open sourced program to detect best subset traits on lead multiva
     sc:operatingSystem "Linux",
         "Mac",
         "Windows" ;
-    sc:softwareVersion "metaphors_201405",
-        "metaphors_201901" ;
+    sc:softwareVersion "2.5" ;
     sc:url "http://orthology.phylomedb.org/" .
 
 <https://bio.tools/metaphyler> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0637,
         edam:topic_3174,
@@ -296024,7 +306840,7 @@ MetaPhat is an open sourced program to detect best subset traits on lead multiva
     biotools:primaryContact "Bo Liu" .
 
 <https://bio.tools/metapipe> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_3174 ;
     sc:author <https://orcid.org/0000-0001-8555-3808> ;
@@ -296041,7 +306857,7 @@ META-pipe is also available as a web service (see link section).""" ;
     biotools:primaryContact <https://orcid.org/0000-0002-4397-8020> .
 
 <https://bio.tools/metaplab> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2259 ;
@@ -296057,18 +306873,18 @@ META-pipe is also available as a web service (see link section).""" ;
 
 <https://bio.tools/metaplatanus> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1931" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ],
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
@@ -296088,31 +306904,56 @@ META-pipe is also available as a web service (see link section).""" ;
         "Windows" ;
     sc:url "https://github.com/rkajitani/MetaPlatanus" .
 
+<https://bio.tools/metapone> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0602,
+        edam:topic_3172,
+        edam:topic_3407,
+        edam:topic_3520 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC364>,
+        "pmcid:PMC9272804",
+        "pubmed:35639952" ;
+    sc:description "A Bioconductor package for joint pathway testing for untargeted metabolomics data." ;
+    sc:featureList edam:operation_3501,
+        edam:operation_3659,
+        edam:operation_3929 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Artistic-2.0" ;
+    sc:name "metapone" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://bioconductor.org/packages/devel/bioc/manuals/metapone/man/metapone.pdf> ;
+    sc:url "https://bioconductor.org/packages/devel/bioc/html/metapone.html.<h4" .
+
 <https://bio.tools/metapopr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
-    sc:additionalType "Command-line tool",
-        "Library",
-        "Script" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0203,
         edam:topic_0769,
         edam:topic_2885,
         edam:topic_3174 ;
-    sc:citation <https://doi.org/10.1101/2020.11.01.363960> ;
-    sc:description """A pipeline for macro- and micro-diversity analyses and visualization of microbial and viral metagenome-derived populations.
-
-A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations.
-
-MetaPop is a pipeline designed to facilitate the processing of sets of short read data mapped to reference genomes with the twin aims of calculating sample-level diversity metrics such as abundance, population diversity, and similarity across multiple samples, and assessing within-species diversity through the assessment of nucleotide polymorphisms and amino acid substitutions. To further facilitate understanding, the pipeline also produces graphical summaries of its results.""" ;
+    sc:citation <https://doi.org/10.1186/S40168-022-01231-0>,
+        "pmcid:PMC8922842",
+        "pubmed:35287721" ;
+    sc:description "A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations" ;
     sc:featureList edam:operation_0337,
         edam:operation_0484,
         edam:operation_2962,
         edam:operation_3196 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
     sc:name "MetaPopR" ;
-    sc:url "https://github.com/metaGmetapop/metapop" .
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://de.cyverse.org/apps/agave/MetaPop-1.0.0" .
 
 <https://bio.tools/metapred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script",
         "Workbench" ;
     sc:applicationSubCategory edam:topic_3063,
@@ -296131,7 +306972,7 @@ MetaPop is a pipeline designed to facilitate the processing of sets of short rea
     sc:url "https://github.com/sheryl-ai/MetaPred" .
 
 <https://bio.tools/metapred2cs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0621,
@@ -296147,8 +306988,21 @@ MetaPop is a pipeline designed to facilitate the processing of sets of short rea
     sc:softwareHelp <http://metapred2cs.ibers.aber.ac.uk/help_page1.html> ;
     sc:url "http://metapred2cs.ibers.aber.ac.uk/" .
 
+<https://bio.tools/metapred_webserver> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:description "MetaPred : A webserver for the Prediction of Cytochrome P450 Isoform responsible for Metabolizing a Drug Molecule" ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "metapred webserver" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/metapred/index.php> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/metapred/index.php" .
+
 <https://bio.tools/metapredict> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -296171,7 +307025,7 @@ MetaPop is a pipeline designed to facilitate the processing of sets of short rea
     sc:url "http://metapredict.readthedocs.io/" .
 
 <https://bio.tools/metaprism> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0637,
         edam:topic_3174,
@@ -296191,7 +307045,7 @@ MetaPrism provides joint profile (infer both taxonomical and functional profile)
     sc:url "https://github.com/jiwoongbio/MetaPrism" .
 
 <https://bio.tools/metapro> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0769,
@@ -296215,7 +307069,7 @@ The MetaPro Meta Transcriptomics/Genomics Pipeline is a software tool that will
     sc:url "https://github.com/ParkinsonLab/MetaPro" .
 
 <https://bio.tools/metaprofi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0154,
@@ -296233,7 +307087,7 @@ The MetaPro Meta Transcriptomics/Genomics Pipeline is a software tool that will
     sc:url "https://github.com/kalininalab/metaprofi" .
 
 <https://bio.tools/metaprofiler> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -296253,17 +307107,17 @@ This repository contains the source code of the MetaProfiler software package. I
     sc:url "https://github.com/psmyth94/MetaProfiler.git" .
 
 <https://bio.tools/metaprokka> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "`prokka` optimized for large datasets" ;
     sc:name "metaprokka" ;
     sc:url "https://github.com/telatin/metaprokka" .
 
 <https://bio.tools/metaproteomeanalyzer> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3651" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -296277,7 +307131,7 @@ This repository contains the source code of the MetaProfiler software package. I
     sc:url "https://code.google.com/p/meta-proteome-analyzer/" .
 
 <https://bio.tools/metapsicov> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_1317,
@@ -296293,7 +307147,7 @@ This repository contains the source code of the MetaProfiler software package. I
     sc:url "http://bioinf.cs.ucl.ac.uk/MetaPSICOV/" .
 
 <https://bio.tools/metaqc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3678 ;
     sc:citation <https://doi.org/10.1093/nar/gkr1071> ;
@@ -296309,7 +307163,7 @@ This repository contains the source code of the MetaProfiler software package. I
     sc:url "http://www.pitt.edu/~tsengweb/MetaOmicsHome.htm" .
 
 <https://bio.tools/metaqtl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3053 ;
@@ -296328,7 +307182,7 @@ This repository contains the source code of the MetaProfiler software package. I
     sc:url "http://www.bioinformatics.org/mqtl/wiki/" .
 
 <https://bio.tools/metaquast> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3174 ;
@@ -296343,7 +307197,7 @@ This repository contains the source code of the MetaProfiler software package. I
     sc:url "http://quast.sourceforge.net/metaquast.html" .
 
 <https://bio.tools/metaquery> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3053,
         edam:topic_3301,
@@ -296361,18 +307215,18 @@ This repository contains the source code of the MetaProfiler software package. I
 
 <https://bio.tools/metaranker> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2299" ;
-            sc:name "Gene name" ;
-            sc:sameAs "http://edamontology.org/data_2299" ] ;
+            sc:additionalType "http://edamontology.org/data_2299" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Gene name" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2984" ;
-            sc:name "Pathway or network report" ;
-            sc:sameAs "http://edamontology.org/data_2984" ],
+            sc:additionalType "http://edamontology.org/data_2984" ;
+            sc:encodingFormat "http://edamontology.org/format_2333" ;
+            sc:name "Pathway or network report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0916" ;
-            sc:name "Gene report" ;
-            sc:sameAs "http://edamontology.org/data_0916" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0916" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Gene report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0199,
@@ -296403,7 +307257,7 @@ This repository contains the source code of the MetaProfiler software package. I
     biotools:primaryContact <http://orcid.org/0000-0003-0207-4831> .
 
 <https://bio.tools/metare> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0749,
@@ -296422,10 +307276,9 @@ metaRE R Package for Meta-analysis of Transcriptome Data to Identify the Cis-reg
 
 <https://bio.tools/metarep> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:name "Sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3174 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btq455> ;
@@ -296442,7 +307295,7 @@ metaRE R Package for Meta-analysis of Transcriptome Data to Identify the Cis-reg
     biotools:primaryContact "Support" .
 
 <https://bio.tools/metarnamodules> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0102,
@@ -296456,7 +307309,7 @@ metaRE R Package for Meta-analysis of Transcriptome Data to Identify the Cis-reg
     sc:url "http://rth.dk/resources/mrm/" .
 
 <https://bio.tools/metarnn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_2815,
         edam:topic_3325 ;
@@ -296469,7 +307322,7 @@ metaRE R Package for Meta-analysis of Transcriptome Data to Identify the Cis-reg
     biotools:primaryContact "Xiaoming Liu" .
 
 <https://bio.tools/metaron> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0114,
         edam:topic_0154,
@@ -296491,7 +307344,7 @@ MetaRon (Metagenomic opeRon prediction pipeline) is a computational workflow for
     sc:url "https://github.com/zaidissa/MetaRon" .
 
 <https://bio.tools/metasel> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3340,
@@ -296508,7 +307361,7 @@ MetaRon (Metagenomic opeRon prediction pipeline) is a computational workflow for
     biotools:primaryContact "Sissades Tongsima" .
 
 <https://bio.tools/metaseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -296528,14 +307381,14 @@ MetaRon (Metagenomic opeRon prediction pipeline) is a computational workflow for
 
 <https://bio.tools/metaseqr> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3112" ;
-            sc:name "Gene expression matrix" ;
-            sc:sameAs "http://edamontology.org/data_3112" ] ;
+            sc:additionalType "http://edamontology.org/data_3112" ;
+            sc:encodingFormat "http://edamontology.org/format_3751" ;
+            sc:name "Gene expression matrix" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3112" ;
-            sc:name "Gene expression matrix" ;
-            sc:sameAs "http://edamontology.org/data_3112" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3112" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Gene expression matrix" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3308 ;
     sc:citation "pubmed:25452340" ;
@@ -296554,7 +307407,7 @@ MetaRon (Metagenomic opeRon prediction pipeline) is a computational workflow for
     biotools:primaryContact "Panagiotis Moulos" .
 
 <https://bio.tools/metaseqr2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Workflow" ;
     sc:author "Panagiotis Moulos" ;
@@ -296571,7 +307424,7 @@ MetaRon (Metagenomic opeRon prediction pipeline) is a computational workflow for
     biotools:primaryContact "Panagiotis Moulos" .
 
 <https://bio.tools/metashark> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0602,
@@ -296588,7 +307441,7 @@ MetaRon (Metagenomic opeRon prediction pipeline) is a computational workflow for
     sc:url "http://bioinformatics.leeds.ac.uk/shark/" .
 
 <https://bio.tools/metashot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0637,
         edam:topic_3174,
@@ -296604,7 +307457,7 @@ MetaRon (Metagenomic opeRon prediction pipeline) is a computational workflow for
     biotools:primaryContact "G. Pesole" .
 
 <https://bio.tools/metashot_prok-quality> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0769,
@@ -296624,7 +307477,7 @@ MetaRon (Metagenomic opeRon prediction pipeline) is a computational workflow for
     sc:url "https://github.com/metashot/prok-quality" .
 
 <https://bio.tools/metasim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3174 ;
@@ -296642,7 +307495,7 @@ MetaRon (Metagenomic opeRon prediction pipeline) is a computational workflow for
     biotools:primaryContact "Richter DC" .
 
 <https://bio.tools/metaskat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_3517 ;
     sc:citation <https://doi.org/10.1016/j.ajhg.2013.05.010> ;
@@ -296657,7 +307510,7 @@ MetaRon (Metagenomic opeRon prediction pipeline) is a computational workflow for
     sc:url "https://www.hsph.harvard.edu/skat/metaskat/" .
 
 <https://bio.tools/metasnv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2885,
         edam:topic_3837 ;
@@ -296676,7 +307529,7 @@ MetaRon (Metagenomic opeRon prediction pipeline) is a computational workflow for
     biotools:primaryContact "Peer Bork" .
 
 <https://bio.tools/metaspace> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3172,
@@ -296699,38 +307552,38 @@ MetaRon (Metagenomic opeRon prediction pipeline) is a computational workflow for
 
 <https://bio.tools/metaspades> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3174 ;
@@ -296749,7 +307602,7 @@ MetaRon (Metagenomic opeRon prediction pipeline) is a computational workflow for
     biotools:primaryContact "Galaxy Support Team" .
 
 <https://bio.tools/metassembler> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0622 ;
@@ -296763,7 +307616,7 @@ MetaRon (Metagenomic opeRon prediction pipeline) is a computational workflow for
     biotools:primaryContact "Michael Schatz" .
 
 <https://bio.tools/metassimulo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0593,
         edam:topic_3172,
@@ -296780,7 +307633,7 @@ MetaRon (Metagenomic opeRon prediction pipeline) is a computational workflow for
     biotools:primaryContact "Tim Ebbels" .
 
 <https://bio.tools/metasspred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_3542 ;
@@ -296794,7 +307647,7 @@ MetaRon (Metagenomic opeRon prediction pipeline) is a computational workflow for
     biotools:primaryContact "Hoque Lab" .
 
 <https://bio.tools/metastats> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3174,
@@ -296810,7 +307663,7 @@ MetaRon (Metagenomic opeRon prediction pipeline) is a computational workflow for
     sc:url "http://metastats.cbcb.umd.edu/detection.html" .
 
 <https://bio.tools/metastudent> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3307 ;
     sc:author "Tobias Hamp" ;
@@ -296829,7 +307682,7 @@ MetaRon (Metagenomic opeRon prediction pipeline) is a computational workflow for
     biotools:primaryContact "Rostlab" .
 
 <https://bio.tools/metasv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_3168 ;
@@ -296842,7 +307695,7 @@ MetaRon (Metagenomic opeRon prediction pipeline) is a computational workflow for
     sc:url "http://bioinform.github.io/metasv/" .
 
 <https://bio.tools/metatasser> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0196,
@@ -296858,17 +307711,11 @@ MetaRon (Metagenomic opeRon prediction pipeline) is a computational workflow for
     sc:operatingSystem "Linux" ;
     sc:url "http://cssb.biology.gatech.edu/skolnick/webservice/MetaTASSER/index.html" .
 
-<https://bio.tools/metatranscriptomic_sequencing> a sc:SoftwareApplication ;
-    sc:description "CD Genomics provides full metatranscriptomic sequencing service package including sample standardization, library construction, Hiseq sequencing, raw data alignment, down-stream bioinformatics processing and statistical analysis. We can tailor this pipeline to your research interest. If you have additional requirements or questions, please feel free to contact us, our specialists are more than happy to assist you." ;
-    sc:name "Metatranscriptomic Sequencing" ;
-    sc:url "https://www.cd-genomics.com/Metatranscriptomic-Sequencing.html" .
-
 <https://bio.tools/metatrass> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:name "Sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3168,
@@ -296891,7 +307738,7 @@ MetaRon (Metagenomic opeRon prediction pipeline) is a computational workflow for
     sc:url "https://github.com/BGI-Qingdao/MetaTrass" .
 
 <https://bio.tools/metatreemap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_3293,
@@ -296907,7 +307754,7 @@ MetaRon (Metagenomic opeRon prediction pipeline) is a computational workflow for
     sc:url "http://metasystems.riken.jp/visualization/treemap/index.htm" .
 
 <https://bio.tools/metatrend> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3053,
         edam:topic_3305 ;
@@ -296923,7 +307770,7 @@ MetaRon (Metagenomic opeRon prediction pipeline) is a computational workflow for
     biotools:primaryContact "Pantelis G. Bagos, Ph.D." .
 
 <https://bio.tools/metatryp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -296951,7 +307798,7 @@ METATRYP allows users to investigate the occurrence of tryptic peptides within t
     sc:url "https://metatryp.whoi.edu" .
 
 <https://bio.tools/metatx> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_0749,
@@ -296971,7 +307818,7 @@ The MetaTX is aimed for plotting the transcriptomic distribution of RNA-related
     sc:url "https://github.com/yue-wang-biomath/MetaTX.1.0" .
 
 <https://bio.tools/metavar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_2885,
@@ -296993,7 +307840,7 @@ metaVaR is a R package developed for population genomic analyses based on varian
     sc:url "https://github.com/madoui/MetaVaR" .
 
 <https://bio.tools/metavelvet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196 ;
     sc:citation <https://doi.org/10.1093/nar/gks678> ;
@@ -297005,7 +307852,7 @@ metaVaR is a R package developed for population genomic analyses based on varian
     sc:url "http://metavelvet.dna.bio.keio.ac.jp/" .
 
 <https://bio.tools/metavelvet-dl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3174,
@@ -297030,7 +307877,7 @@ metaVaR is a R package developed for population genomic analyses based on varian
     sc:url "http://www.dna.bio.keio.ac.jp/metavelvet-dl/" .
 
 <https://bio.tools/metavisitor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -297049,7 +307896,7 @@ metaVaR is a R package developed for population genomic analyses based on varian
     biotools:primaryContact "Christophe Antoniewski" .
 
 <https://bio.tools/metaviz> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3174,
         edam:topic_3697,
@@ -297068,7 +307915,7 @@ metaVaR is a R package developed for population genomic analyses based on varian
     sc:url "http://metaviz.cbcb.umd.edu/" .
 
 <https://bio.tools/metavizr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3174 ;
     sc:citation <https://doi.org/10.1093/nar/gky136>,
@@ -297088,7 +307935,7 @@ metaVaR is a R package developed for population genomic analyses based on varian
     biotools:primaryContact "Hector Corrada Bravo" .
 
 <https://bio.tools/metaworks> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0621,
@@ -297107,7 +307954,7 @@ MetaWorks consists of a Conda environment and Snakemake pipeline that is meant t
     sc:url "https://github.com/terrimporter/MetaWorks" .
 
 <https://bio.tools/metawrap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_3174,
         edam:topic_3673,
@@ -297129,7 +307976,7 @@ MetaWorks consists of a Conda environment and Snakemake pipeline that is meant t
         "James Taylor" .
 
 <https://bio.tools/metax> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3172,
@@ -297149,7 +307996,7 @@ MetaWorks consists of a Conda environment and Snakemake pipeline that is meant t
     biotools:primaryContact "Bo Wen" .
 
 <https://bio.tools/metaxa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3174,
@@ -297167,7 +308014,7 @@ MetaWorks consists of a Conda environment and Snakemake pipeline that is meant t
     biotools:primaryContact "Johan Bengtsson" .
 
 <https://bio.tools/metaxa2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0637,
@@ -297184,7 +308031,7 @@ MetaWorks consists of a Conda environment and Snakemake pipeline that is meant t
     sc:url "http://microbiology.se/software/metaxa2/" .
 
 <https://bio.tools/metaxplor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_3071,
@@ -297198,8 +308045,52 @@ MetaWorks consists of a Conda environment and Snakemake pipeline that is meant t
     sc:softwareVersion "1.0-beta" ;
     sc:url "https://github.com/SouthGreenPlatform/metaXplor" .
 
+<https://bio.tools/metazexp> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_3170,
+        edam:topic_3308,
+        edam:topic_3320,
+        edam:topic_3500 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAB933>,
+        "pmcid:PMC8728262",
+        "pubmed:34718719" ;
+    sc:description "A database for gene expression and alternative splicing profiles and their analyses based on 53 615 public RNA-seq samples in 72 metazoan species." ;
+    sc:featureList edam:operation_0224,
+        edam:operation_0264,
+        edam:operation_0314,
+        edam:operation_3431,
+        edam:operation_3891 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "MetazExp" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://bioinfo.njau.edu.cn/metazExp/" .
+
+<https://bio.tools/metbp> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0097,
+        edam:topic_0099,
+        edam:topic_3125,
+        edam:topic_3534 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC392>,
+        "pubmed:35695777" ;
+    sc:description "A Software Tool for Detection of Interaction between Metal Ion-RNA Base Pairs." ;
+    sc:featureList edam:operation_1834,
+        edam:operation_3898,
+        edam:operation_3903 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "MetBP" ;
+    sc:operatingSystem "Linux" ;
+    sc:url "https://github.com/computational-biology/metbp" .
+
 <https://bio.tools/metccs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3172,
@@ -297216,7 +308107,7 @@ MetaWorks consists of a Conda environment and Snakemake pipeline that is meant t
     biotools:primaryContact "Zheng-Jiang Zhu" .
 
 <https://bio.tools/metchalizer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3172,
@@ -297232,7 +308123,7 @@ This repository contains code and datasets used for the article Using Out-of-Bat
     sc:url "https://github.com/mbongaerts/Metchalizer/" .
 
 <https://bio.tools/metcirc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0602,
@@ -297252,7 +308143,7 @@ This repository contains code and datasets used for the article Using Out-of-Bat
     biotools:primaryContact "Thomas Naake" .
 
 <https://bio.tools/metdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_3050,
         edam:topic_3308,
@@ -297267,7 +308158,7 @@ This repository contains code and datasets used for the article Using Out-of-Bat
     sc:url "http://metdb.sb-roscoff.fr/metdb/" .
 
 <https://bio.tools/metdisease> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0219,
         edam:topic_0602,
@@ -297285,7 +308176,7 @@ This repository contains code and datasets used for the article Using Out-of-Bat
     biotools:primaryContact "Alla Karnovsky" .
 
 <https://bio.tools/metdraw> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_3407 ;
@@ -297301,7 +308192,7 @@ This repository contains code and datasets used for the article Using Out-of-Bat
     biotools:primaryContact "Dr. Jason A. Papin" .
 
 <https://bio.tools/metenp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0602,
@@ -297322,7 +308213,7 @@ MetENP is a R package that enables detection of significant metabolites from met
     sc:url "https://github.com/metabolomicsworkbench/MetENP" .
 
 <https://bio.tools/meteolakes> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3306,
@@ -297338,16 +308229,36 @@ This product is developed, managed and maintained by Theo Baracchini and part of
     sc:name "Meteolakes" ;
     sc:url "http://meteolakes.ch" .
 
+<https://bio.tools/metex> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0121,
+        edam:topic_0154,
+        edam:topic_3172,
+        edam:topic_3520 ;
+    sc:citation <https://doi.org/10.1021/ACSCHEMBIO.1C00737>,
+        "pubmed:34859662" ;
+    sc:description "Metabolomics Explorer Application for Natural Product Discovery." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3803,
+        edam:operation_3937 ;
+    sc:isAccessibleForFree true ;
+    sc:name "MetEx" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://mo.princeton.edu/MetEx/" .
+
 <https://bio.tools/metexplore> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ] ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:encodingFormat "http://edamontology.org/format_2585" ;
+            sc:name "Pathway or network" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:encodingFormat "http://edamontology.org/format_3620" ;
+            sc:name "Pathway or network" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Web service",
         "Workbench" ;
@@ -297372,20 +308283,21 @@ This product is developed, managed and maintained by Theo Baracchini and part of
         <https://metexplore.toulouse.inra.fr/metexploreViz/doc/documentation.php> ;
     sc:softwareVersion "2.26",
         "2.27",
-        "2.28" ;
+        "2.28",
+        "2.30" ;
     sc:url "http://www.metexplore.fr/" ;
     biotools:primaryContact <https://orcid.org/0000-0001-9401-2894> .
 
 <https://bio.tools/metfamily> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Mass spectrometry spectra" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3603" ;
+            sc:name "Image" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3172 ;
     sc:citation <https://doi.org/10.1021/acs.analchem.6b01569>,
@@ -297411,14 +308323,13 @@ This product is developed, managed and maintained by Theo Baracchini and part of
 
 <https://bio.tools/metfrag> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3108" ;
-            sc:name "Experimental measurement" ;
-            sc:sameAs "http://edamontology.org/data_3108" ] ;
+            sc:additionalType "http://edamontology.org/data_3108" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Experimental measurement" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0883" ;
-            sc:name "Structure" ;
-            sc:sameAs "http://edamontology.org/data_0883" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0883" ;
+            sc:name "Structure" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_3391 ;
     sc:citation <https://doi.org/10.1186/s13321-016-0115-9> ;
@@ -297433,7 +308344,7 @@ This product is developed, managed and maintained by Theo Baracchini and part of
     sc:url "http://msbi.ipb-halle.de/MetFragBeta/" .
 
 <https://bio.tools/metfusion> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3172 ;
@@ -297447,19 +308358,8 @@ This product is developed, managed and maintained by Theo Baracchini and part of
     sc:softwareHelp <https://msbi.ipb-halle.de/MetFusion/> ;
     sc:url "http://msbi.ipb-halle.de/MetFusion/" .
 
-<https://bio.tools/methane_emissions_high-emitting_paddies> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0749,
-        edam:topic_0780,
-        edam:topic_3810 ;
-    sc:citation <https://doi.org/10.12688/F1000RESEARCH.15859.3>,
-        "pmcid:PMC6659764",
-        "pubmed:31372208" ;
-    sc:description "> VERY_LOW CONFIDENCE! | > HOMEPAGE MISSING! | > CORRECT NAME OF TOOL COULD ALSO BE 'suppressing methane emissions high-emitting paddies', 'emissions high-emitting paddies', 'high-emitting paddies', 'methane emissions high-emitting' | Rice plants reduce methane emissions in high-emitting paddies | Background: Rice is understood to enhance methane emissions from paddy fields in IPCC guidelines. However, rice actually has two opposite functions related to methane: i) emission enhancement, such as by providing emission pathways (aerenchyma) and methanogenetic substrates; and ii) emission suppression by providing oxygen pathways, which suppress methanogenesis or enhance methane oxidation. The overall role of rice is thus determined by the balance between its enhancing and suppressing functions" ;
-    sc:name "methane emissions high-emitting paddies" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31372208" .
-
 <https://bio.tools/methcancer-gen> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0654,
@@ -297480,7 +308380,7 @@ methCancer-gen is a deep neural network-based tool for generating DNA methylome
     sc:url "https://github.com/cbi-bioinfo/methCancer-gen" .
 
 <https://bio.tools/methcoresprofiler> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Script" ;
     sc:applicationSubCategory edam:topic_0199,
@@ -297499,7 +308399,7 @@ methCancer-gen is a deep neural network-based tool for generating DNA methylome
     sc:url "https://github.com/84AP/MethCoresProfiler/" .
 
 <https://bio.tools/methdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0654,
@@ -297517,7 +308417,7 @@ methCancer-gen is a deep neural network-based tool for generating DNA methylome
     biotools:primaryContact "christoph.grunau@methdb.de" .
 
 <https://bio.tools/methget> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -297544,7 +308444,7 @@ Ordinal association analyses with genes ranked by gene expression level.""" ;
     sc:url "https://paoyang.ipmb.sinica.edu.tw/Software.html" .
 
 <https://bio.tools/methgo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3168,
         edam:topic_3295,
@@ -297558,7 +308458,7 @@ Ordinal association analyses with genes ranked by gene expression level.""" ;
     sc:url "http://paoyangchen-laboratory.github.io/methgo/" .
 
 <https://bio.tools/methhaplo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_2885,
@@ -297580,7 +308480,7 @@ DNA methylation is an important epigenetic modification that plays a critical ro
     sc:url "https://github.com/ZhouQiangwei/MethHaplo" .
 
 <https://bio.tools/methhc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0654,
@@ -297604,7 +308504,7 @@ More Clinical and Experimentally Validated Data.""" ;
     sc:url "http://awi.cuhk.edu.cn/~MethHC" .
 
 <https://bio.tools/methimpute> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3168,
         edam:topic_3295 ;
@@ -297623,7 +308523,7 @@ More Clinical and Experimentally Validated Data.""" ;
     biotools:primaryContact "Aaron Taudt" .
 
 <https://bio.tools/methinheritsim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3168,
@@ -297644,7 +308544,7 @@ More Clinical and Experimentally Validated Data.""" ;
     biotools:primaryContact "Pascal Belleau" .
 
 <https://bio.tools/methk> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0204,
@@ -297660,7 +308560,7 @@ More Clinical and Experimentally Validated Data.""" ;
     sc:url "http://csb.cse.yzu.edu.tw/MethK/" .
 
 <https://bio.tools/methmarker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3173,
         edam:topic_3295 ;
@@ -297675,8 +308575,27 @@ More Clinical and Experimentally Validated Data.""" ;
     sc:url "http://methmarker.mpi-inf.mpg.de/" ;
     biotools:primaryContact "MethMarker Support" .
 
+<https://bio.tools/methodsj2> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_3063,
+        edam:topic_3382,
+        edam:topic_3520 ;
+    sc:citation <https://doi.org/10.1038/S41592-021-01290-5>,
+        "pubmed:34654919" ;
+    sc:description "A software tool to capture metadata and generate comprehensive microscopy methods text." ;
+    sc:featureList edam:operation_3443,
+        edam:operation_3552 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "MethodsJ2" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/ABIF-McGill/MethodsJ2" .
+
 <https://bio.tools/methpanel> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_0769,
@@ -297694,7 +308613,7 @@ MethPanel is a computational pipeline in Linux operating system with an interact
     sc:url "https://github.com/thinhong/MethPanel" .
 
 <https://bio.tools/methpat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3295,
@@ -297711,7 +308630,7 @@ MethPanel is a computational pipeline in Linux operating system with an interact
     biotools:primaryContact "Bernie Pope" .
 
 <https://bio.tools/methped> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2229,
@@ -297732,7 +308651,7 @@ MethPanel is a computational pipeline in Linux operating system with an interact
     biotools:primaryContact "Helena Carén" .
 
 <https://bio.tools/methpipe> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3168,
         edam:topic_3295 ;
@@ -297748,7 +308667,7 @@ MethPanel is a computational pipeline in Linux operating system with an interact
     biotools:primaryContact "MethPipe Support" .
 
 <https://bio.tools/methplotlib> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0654,
@@ -297777,7 +308696,7 @@ methplotlib [-h] [-v] -m METHYLATION [METHYLATION ...] -n NAMES""" ;
     sc:url "https://github.com/wdecoster/methplotlib" .
 
 <https://bio.tools/methreg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_2885,
@@ -297800,7 +308719,7 @@ Epigenome-wide association studies (EWAS) detects a large number of DNA methylat
     sc:url "https://bioconductor.org/packages/MethReg/" .
 
 <https://bio.tools/methrix> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2885,
         edam:topic_3295,
@@ -297823,14 +308742,14 @@ Bedgraph files generated by BS pipelines often come in various flavors. Critical
 
 <https://bio.tools/methtargetedngs> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1921" ;
+            sc:name "Sequence alignment" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1636" ;
-            sc:name "Heat map" ;
-            sc:sameAs "http://edamontology.org/data_1636" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1636" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Heat map" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3168,
@@ -297849,7 +308768,7 @@ Bedgraph files generated by BS pipelines often come in various flavors. Critical
     biotools:primaryContact "Muhammad Ahmer Jamil" .
 
 <https://bio.tools/methvisual> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3295,
@@ -297869,7 +308788,7 @@ Bedgraph files generated by BS pipelines often come in various flavors. Critical
     biotools:primaryContact "Arie Zackay" .
 
 <https://bio.tools/methyanalysis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0654,
@@ -297889,7 +308808,7 @@ Bedgraph files generated by BS pipelines often come in various flavors. Critical
     biotools:primaryContact "Pan Du" .
 
 <https://bio.tools/methyl-eqtl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0749,
@@ -297911,7 +308830,7 @@ Bedgraph files generated by BS pipelines often come in various flavors. Critical
     sc:url "https://rstudio-prd-c1.pmacs.upenn.edu/methyl-eQTL/" .
 
 <https://bio.tools/methylCC> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0654,
@@ -297942,7 +308861,7 @@ DNAMethylation, MethylSeq, MethylationArray, Microarray, Sequencing, Software, W
     sc:url "https://github.com/stephaniehicks/methylCC" .
 
 <https://bio.tools/methylGSA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Library" ;
     sc:applicationSubCategory edam:topic_3170,
@@ -297965,7 +308884,7 @@ DNAMethylation, MethylSeq, MethylationArray, Microarray, Sequencing, Software, W
     biotools:primaryContact "Xu Ren" .
 
 <https://bio.tools/methylaction> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_0654,
@@ -297983,18 +308902,18 @@ DNAMethylation, MethylSeq, MethylationArray, Microarray, Sequencing, Software, W
 
 <https://bio.tools/methylaid> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3117" ;
-            sc:name "Microarray hybridisation data" ;
-            sc:sameAs "http://edamontology.org/data_3117" ] ;
+            sc:additionalType "http://edamontology.org/data_3117" ;
+            sc:encodingFormat "http://edamontology.org/format_3578" ;
+            sc:name "Microarray hybridisation data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ],
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Plot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -298016,20 +308935,8 @@ DNAMethylation, MethylSeq, MethylationArray, Microarray, Sequencing, Software, W
     sc:url "http://bioconductor.org/packages/release/bioc/html/MethylAid.html" ;
     biotools:primaryContact "M. van Iterson" .
 
-<https://bio.tools/methylation> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3295,
-        edam:topic_3518,
-        edam:topic_3674 ;
-    sc:citation <https://doi.org/10.1101/733204> ;
-    sc:description "> VERY_LOW CONFIDENCE! | > HOMEPAGE MISSING! | > CORRECT NAME OF TOOL COULD ALSO BE 'Infinium Methylation450K BeadChip Infinium methylationEPIC', 'cartilage', 'CpG', 'Infinium Methylation450K' | Correlation of Infinium HumanMethylation450K and MethylationEPIC BeadChip arrays in cartilage | Abstract Background DNA methylation of CpG sites is commonly measured using Illumina Infinium BeadChip platforms. The Infinium MethylationEPIC array has replaced the Infinium Methylation450K array. The two arrays use the same technology, with the EPIC array assaying 865859 CpG sites, almost double the number of sites present on the 450K array. In this study, we compare DNA methylation values of shared CpGs of the same human cartilage samples assayed using both platforms. Methods DNA methylation was measured in 21 human cartilage samples using the Illumina Infinium Methylation450K BeadChip and the Infinium methylationEPIC array" ;
-    sc:featureList edam:operation_0417,
-        edam:operation_3206,
-        edam:operation_3207 ;
-    sc:name "methylation" ;
-    sc:url "https://doi.org/10.1101/733204" .
-
 <https://bio.tools/methylationtoactivity> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_2640,
@@ -298049,7 +308956,7 @@ Although genome-wide DNA methylomes have demonstrated their clinical value as re
     sc:url "https://platform.stjude.cloud/workflows/methylation-to-activity" .
 
 <https://bio.tools/methylclock> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0654,
@@ -298067,7 +308974,7 @@ Although genome-wide DNA methylomes have demonstrated their clinical value as re
     sc:url "https://github.com/isglobal-brge/methylclock" .
 
 <https://bio.tools/methylcoder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3168,
@@ -298087,14 +308994,14 @@ Although genome-wide DNA methylomes have demonstrated their clinical value as re
 
 <https://bio.tools/methyldackel> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1383" ;
-            sc:name "Nucleic acid sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_1383" ] ;
+            sc:additionalType "http://edamontology.org/data_1383" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Nucleic acid sequence alignment" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2854" ;
-            sc:name "Position-specific scoring matrix" ;
-            sc:sameAs "http://edamontology.org/data_2854" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2854" ;
+            sc:encodingFormat "http://edamontology.org/format_3583" ;
+            sc:name "Position-specific scoring matrix" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3173 ;
     sc:description "A (mostly) universal methylation extractor for BS-seq experiments." ;
@@ -298109,7 +309016,7 @@ Although genome-wide DNA methylomes have demonstrated their clinical value as re
     sc:url "https://github.com/dpryan79/MethylDackel" .
 
 <https://bio.tools/methylextract> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3168,
@@ -298128,7 +309035,7 @@ Although genome-wide DNA methylomes have demonstrated their clinical value as re
         "Ricardo Lebrón" .
 
 <https://bio.tools/methylflow> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3168,
@@ -298143,7 +309050,7 @@ Although genome-wide DNA methylomes have demonstrated their clinical value as re
     biotools:primaryContact "Hector Corrada Bravo" .
 
 <https://bio.tools/methylhmm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3295 ;
     sc:citation <https://doi.org/10.1371/journal.pone.0032225> ;
@@ -298156,7 +309063,7 @@ Although genome-wide DNA methylomes have demonstrated their clinical value as re
     sc:url "http://stephenslab.uchicago.edu/software.html#eqtlbma" .
 
 <https://bio.tools/methylinheritance> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3168,
@@ -298176,7 +309083,7 @@ Although genome-wide DNA methylomes have demonstrated their clinical value as re
     biotools:primaryContact "Astrid Deschenes" .
 
 <https://bio.tools/methylkit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0654,
@@ -298198,7 +309105,7 @@ Although genome-wide DNA methylomes have demonstrated their clinical value as re
     biotools:primaryContact <http://orcid.org/0000-0002-0468-0117> .
 
 <https://bio.tools/methylmix> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3295,
@@ -298218,14 +309125,14 @@ Although genome-wide DNA methylomes have demonstrated their clinical value as re
 
 <https://bio.tools/methylmnm> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_3003" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0951" ;
-            sc:name "Statistical estimate score" ;
-            sc:sameAs "http://edamontology.org/data_0951" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0951" ;
+            sc:encodingFormat "http://edamontology.org/format_3003" ;
+            sc:name "Statistical estimate score" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3168,
@@ -298245,7 +309152,7 @@ Although genome-wide DNA methylomes have demonstrated their clinical value as re
     biotools:primaryContact "Yan Zhou" .
 
 <https://bio.tools/methylomedb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3173,
@@ -298266,7 +309173,7 @@ Although genome-wide DNA methylomes have demonstrated their clinical value as re
     biotools:primaryContact "Fatemeh G. Haghighi" .
 
 <https://bio.tools/methylpipe> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0654,
@@ -298287,8 +309194,27 @@ Although genome-wide DNA methylomes have demonstrated their clinical value as re
     sc:url "http://bioconductor.org/packages/release/bioc/html/methylPipe.html" ;
     biotools:primaryContact <http://orcid.org/0000-0002-4650-8745> .
 
+<https://bio.tools/methylpiper> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0654,
+        edam:topic_0769,
+        edam:topic_3295 ;
+    sc:citation <https://doi.org/10.1101/2021.11.19.21266469> ;
+    sc:description "Modular and reproducible pipelines for multi-omics predictors of complex traits." ;
+    sc:featureList edam:operation_0417,
+        edam:operation_3503,
+        edam:operation_3659 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "MethylPipeR" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/marioni-group/MethylPipeR" .
+
 <https://bio.tools/methylscaper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3176,
@@ -298306,7 +309232,7 @@ methylscaper is a Shiny app for visualizing methylation data. Install the packag
     sc:url "https://github.com/rhondabacher/acmethylscaper" .
 
 <https://bio.tools/methylseekr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0654,
@@ -298328,7 +309254,7 @@ methylscaper is a Shiny app for visualizing methylation data. Install the packag
     biotools:primaryContact "Lukas Burger" .
 
 <https://bio.tools/methylsig> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3168,
@@ -298345,7 +309271,7 @@ methylscaper is a Shiny app for visualizing methylation data. Install the packag
     biotools:primaryContact "Maureen A. Sartor" .
 
 <https://bio.tools/methylspectrum> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3295,
@@ -298360,7 +309286,7 @@ methylscaper is a Shiny app for visualizing methylation data. Install the packag
     sc:url "http://people.oregonstate.edu/~housemae/software/" .
 
 <https://bio.tools/methylstar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_0769,
@@ -298385,7 +309311,7 @@ To process a large number of WGBS samples in a consistent, documented and reprod
     sc:url "https://github.com/jlab-code/MethylStar" .
 
 <https://bio.tools/methylumi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0654,
@@ -298405,7 +309331,7 @@ To process a large number of WGBS samples in a consistent, documented and reprod
     biotools:primaryContact "Sean Davis" .
 
 <https://bio.tools/methylviewer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3125,
         edam:topic_3168,
@@ -298422,7 +309348,7 @@ To process a large number of WGBS samples in a consistent, documented and reprod
     biotools:primaryContact "Ian Carr." .
 
 <https://bio.tools/methyvim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3295,
         edam:topic_3674 ;
@@ -298441,7 +309367,7 @@ To process a large number of WGBS samples in a consistent, documented and reprod
     biotools:primaryContact "Nima Hejazi" .
 
 <https://bio.tools/metid> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3071,
@@ -298457,7 +309383,7 @@ To process a large number of WGBS samples in a consistent, documented and reprod
     biotools:primaryContact "Michael Snyder" .
 
 <https://bio.tools/metidfyr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0154,
@@ -298476,7 +309402,7 @@ MetIDfyR is an open-source, cross-platform and versatile R script to predict and
     sc:url "https://github.com/agnesblch/MetIDfyR" .
 
 <https://bio.tools/metitree> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_3172 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/bts486> ;
@@ -298492,7 +309418,7 @@ MetIDfyR is an open-source, cross-platform and versatile R script to predict and
     sc:url "http://www.metitree.nl/" .
 
 <https://bio.tools/metlab> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_3174,
@@ -298511,7 +309437,7 @@ MetIDfyR is an open-source, cross-platform and versatile R script to predict and
     biotools:primaryContact "Julliette Hayer" .
 
 <https://bio.tools/metmap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3297,
@@ -298528,7 +309454,7 @@ MetIDfyR is an open-source, cross-platform and versatile R script to predict and
     biotools:primaryContact "Julio Vera" .
 
 <https://bio.tools/metmatch> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3172 ;
     sc:citation <https://doi.org/10.3390/metabo6040039>,
@@ -298544,7 +309470,7 @@ MetIDfyR is an open-source, cross-platform and versatile R script to predict and
     biotools:primaryContact <http://orcid.org/0000-0002-7520-4943> .
 
 <https://bio.tools/metradisc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3518 ;
@@ -298557,8 +309483,31 @@ MetIDfyR is an open-source, cross-platform and versatile R script to predict and
     sc:url "http://biomath.med.uth.gr/default.aspx?id=232164AC-9C6B-4A27-A595-2A22C35B6260" ;
     biotools:primaryContact "Elias Zintzaras" .
 
+<https://bio.tools/metro> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0153,
+        edam:topic_0199,
+        edam:topic_0203,
+        edam:topic_3305,
+        edam:topic_3517 ;
+    sc:citation <https://doi.org/10.1016/J.AJHG.2022.03.003>,
+        "pmcid:PMC9118130",
+        "pubmed:35334221" ;
+    sc:description "METRO is a new computational method that leverages expression data collected from multiple genetic ancestries to enhance Transcriptome-wide association studies (TWAS)." ;
+    sc:featureList edam:operation_0282,
+        edam:operation_2495,
+        edam:operation_3799 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "METRO" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/zhengli09/METRO" .
+
 <https://bio.tools/metroid> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0736,
@@ -298579,7 +309528,7 @@ METROID (Morphological Extraction of Transmembrane potential from Regions Of Int
     sc:url "https://doi.org/10.6084/m9.figshare.11344046.v1" .
 
 <https://bio.tools/metscape_3> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0602,
@@ -298596,7 +309545,7 @@ METROID (Morphological Extraction of Transmembrane potential from Regions Of Int
     biotools:primaryContact "Support" .
 
 <https://bio.tools/metstat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3172 ;
     sc:description "A diverse collection of metabolomics related statistical tools." ;
@@ -298613,7 +309562,7 @@ METROID (Morphological Extraction of Transmembrane potential from Regions Of Int
     biotools:primaryContact "Gooitzen Zwanenburg" .
 
 <https://bio.tools/mettailor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3172 ;
@@ -298629,7 +309578,7 @@ METROID (Morphological Extraction of Transmembrane potential from Regions Of Int
     biotools:primaryContact "Choi H" .
 
 <https://bio.tools/metu> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_3305,
         edam:topic_3324 ;
@@ -298652,7 +309601,7 @@ ERİŞKİN YOĞUN BAKIM DOLULUK ORANI.""" ;
     sc:url "https://github.com/kansil/covid-19" .
 
 <https://bio.tools/mev> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3170 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btr490> ;
@@ -298670,10 +309619,9 @@ ERİŞKİN YOĞUN BAKIM DOLULUK ORANI.""" ;
 
 <https://bio.tools/mexpress> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1025" ;
-            sc:name "Gene identifier" ;
-            sc:sameAs "http://edamontology.org/data_1025" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1025" ;
+            sc:name "Gene identifier" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3173,
         edam:topic_3308 ;
@@ -298690,7 +309638,7 @@ ERİŞKİN YOĞUN BAKIM DOLULUK ORANI.""" ;
     sc:url "http://www.mexpress.be" .
 
 <https://bio.tools/meye> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0625,
@@ -298711,7 +309659,7 @@ ERİŞKİN YOĞUN BAKIM DOLULUK ORANI.""" ;
     biotools:primaryContact <https://orcid.org/0000-0001-5344-5079> .
 
 <https://bio.tools/mf-towmut> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0625,
@@ -298728,7 +309676,7 @@ R program to implement MF-TOWmuT, a new method developed for large-scale genome
     sc:url "https://github.com/gaochengPRC/MF-TOWmuT" .
 
 <https://bio.tools/mfa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3170 ;
@@ -298747,7 +309695,7 @@ R program to implement MF-TOWmuT, a new method developed for large-scale genome
     biotools:primaryContact "Kieran Campbell" .
 
 <https://bio.tools/mfames> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:description "An MATLAB implementation of the (Mutliple) FAst MEdoid Selection algorithm (MFAMES)." ;
     sc:featureList edam:operation_3432 ;
@@ -298761,7 +309709,7 @@ R program to implement MF-TOWmuT, a new method developed for large-scale genome
     biotools:primaryContact "Stephen Pratt" .
 
 <https://bio.tools/mfasd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_2814,
@@ -298776,7 +309724,7 @@ R program to implement MF-TOWmuT, a new method developed for large-scale genome
     biotools:primaryContact "Zhi Liang" .
 
 <https://bio.tools/mfassignr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0769,
@@ -298791,7 +309739,7 @@ Ultrahigh resolution mass spectrometry is widely used for nontargeted analysis o
     sc:url "https://github.com/skschum/MFAssignR" .
 
 <https://bio.tools/mfcis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0780,
@@ -298814,7 +309762,7 @@ Ultrahigh resolution mass spectrometry is widely used for nontargeted analysis o
     sc:url "http://mfcis.online/" .
 
 <https://bio.tools/mfcnv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_3168,
@@ -298835,7 +309783,7 @@ There are six directories. 1.program This directory contains three files that ha
     sc:url "https://github.com/BDanalysis/mfcnv" .
 
 <https://bio.tools/mfdm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2885,
         edam:topic_3053,
@@ -298853,7 +309801,7 @@ There are six directories. 1.program This directory contains three files that ha
     biotools:primaryContact "LI Haipeng" .
 
 <https://bio.tools/mfdp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0634,
@@ -298870,7 +309818,7 @@ There are six directories. 1.program This directory contains three files that ha
     biotools:primaryContact "Dr. Lukasz Kurgan" .
 
 <https://bio.tools/mfga> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0625,
@@ -298888,7 +309836,7 @@ The Male Fertility Gene Atlas (MFGA) is a public platform for providing a fast,
     sc:url "https://mfga.uni-muenster.de" .
 
 <https://bio.tools/mflink> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_2269,
@@ -298904,7 +309852,7 @@ The Male Fertility Gene Atlas (MFGA) is a public platform for providing a fast,
     biotools:primaryContact "David Curtis" .
 
 <https://bio.tools/mflux> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2259,
@@ -298925,7 +309873,7 @@ The Male Fertility Gene Atlas (MFGA) is a public platform for providing a fast,
         "Dr. Wu" .
 
 <https://bio.tools/mfmd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_2815,
@@ -298943,7 +309891,7 @@ The Male Fertility Gene Atlas (MFGA) is a public platform for providing a fast,
         "Hicham Charoute" .
 
 <https://bio.tools/mfold> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0097,
@@ -298966,34 +309914,34 @@ The Male Fertility Gene Atlas (MFGA) is a public platform for providing a fast,
 
 <https://bio.tools/mfpaq> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ],
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3710" ;
+            sc:name "Mass spectrometry spectra" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ],
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Peptide identification" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ],
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_3713" ;
+            sc:name "Peptide identification" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ] ;
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_3713" ;
+            sc:name "Peptide identification" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ],
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Peptide identification" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ],
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Peptide identification" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_3468" ;
+            sc:name "Peptide identification" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -299014,8 +309962,21 @@ The Male Fertility Gene Atlas (MFGA) is a public platform for providing a fast,
     sc:softwareHelp <http://mfpaq.sourceforge.net/> ;
     sc:url "http://mfpaq.sourceforge.net" .
 
+<https://bio.tools/mfqe> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0622 ;
+    sc:description "FASTA/FASTQ extractor for multiple sets of read names" ;
+    sc:featureList edam:operation_2422 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "mfqe" ;
+    sc:operatingSystem "Linux" ;
+    sc:softwareHelp <https://anaconda.org/bioconda/mfqe> ;
+    sc:url "https://github.com/wwood/mfqe" .
+
 <https://bio.tools/mfsearcher> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API" ;
     sc:applicationSubCategory edam:topic_3172 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/bts660> ;
@@ -299031,14 +309992,13 @@ The Male Fertility Gene Atlas (MFGA) is a public platform for providing a fast,
 
 <https://bio.tools/mfungd> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2799" ;
-            sc:name "Gene ID (MfunGD)" ;
-            sc:sameAs "http://edamontology.org/data_2799" ] ;
+            sc:additionalType "http://edamontology.org/data_2799" ;
+            sc:name "Gene ID (MfunGD)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0916" ;
-            sc:name "Gene report" ;
-            sc:sameAs "http://edamontology.org/data_0916" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0916" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Gene report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0621 ;
     sc:citation <https://doi.org/10.1093/nar/gkj074>,
@@ -299054,7 +310014,7 @@ The Male Fertility Gene Atlas (MFGA) is a public platform for providing a fast,
     sc:url "http://bio2rdf.org/describe/?uri=http://bio2rdf.org/lsr:mfungd" .
 
 <https://bio.tools/mfuzz> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -299075,8 +310035,29 @@ The Male Fertility Gene Atlas (MFGA) is a public platform for providing a fast,
     sc:url "http://bioconductor.org/packages/release/bioc/html/Mfuzz.html" ;
     biotools:primaryContact "Matthias Futschik" .
 
+<https://bio.tools/mg-ncrexplorer> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0659,
+        edam:topic_0804,
+        edam:topic_3360,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.1016/J.CLIM.2022.109075>,
+        "pubmed:35809855" ;
+    sc:description "Comprehensive analysis of ncRNA involvement in brain microglia immunology." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_2422,
+        edam:operation_3792 ;
+    sc:isAccessibleForFree true ;
+    sc:name "MG-ncRexplorer" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://bio-bigdata.hrbmu.edu.cn/MG-ncRexplorer/" .
+
 <https://bio.tools/mg-rast> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3174,
         edam:topic_3293 ;
@@ -299090,7 +310071,7 @@ The Male Fertility Gene Atlas (MFGA) is a public platform for providing a fast,
     biotools:primaryContact "F. Meyer" .
 
 <https://bio.tools/mga> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654 ;
@@ -299104,7 +310085,7 @@ The Male Fertility Gene Atlas (MFGA) is a public platform for providing a fast,
     sc:url "http://bibiserv.techfak.uni-bielefeld.de/mga/" .
 
 <https://bio.tools/mgcat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654 ;
@@ -299123,7 +310104,7 @@ The Male Fertility Gene Atlas (MFGA) is a public platform for providing a fast,
     sc:url "http://alggen.lsi.upc.es/recerca/align/mgcat/" .
 
 <https://bio.tools/mgclus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2259 ;
@@ -299138,8 +310119,33 @@ The Male Fertility Gene Atlas (MFGA) is a public platform for providing a fast,
     sc:url "http://sonnhammer.sbc.su.se/download/software/MGclus/Readme" ;
     biotools:primaryContact "Erik L. L. Sonnhammer" .
 
+<https://bio.tools/mgcount> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_0203,
+        edam:topic_0659,
+        edam:topic_3170,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.1186/S12859-021-04544-3>,
+        "pmcid:PMC8760670",
+        "pubmed:35030988" ;
+    sc:description "A total RNA-seq quantification tool to address multi-mapping and multi-overlapping alignments ambiguity in non-coding transcripts." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_3436,
+        edam:operation_3563,
+        edam:operation_3799 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "MGcount" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://filedn.com/lTnUWxFTA93JTyX3Hvbdn2h/mgcount/UserGuide.html> ;
+    sc:url "https://github.com/hitaandrea/MGcount" .
+
 <https://bio.tools/mgd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0199,
@@ -299163,7 +310169,7 @@ The Male Fertility Gene Atlas (MFGA) is a public platform for providing a fast,
     sc:url "http://www.informatics.jax.org/" .
 
 <https://bio.tools/mgdrive_2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_3305,
@@ -299182,7 +310188,7 @@ MGDrivE 2 is a new simulation platform which extends capabilities from the MGDri
     sc:url "https://github.com/MarshallLab/MGDrivE/tree/master/MGDrivE2" .
 
 <https://bio.tools/mgenome> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0622,
@@ -299197,7 +310203,7 @@ MGDrivE 2 is a new simulation platform which extends capabilities from the MGDri
     biotools:primaryContact "Shiquan Wu" .
 
 <https://bio.tools/mgenomesubtractor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0622 ;
     sc:citation "pubmed:20435682" ;
@@ -299214,18 +310220,18 @@ MGDrivE 2 is a new simulation platform which extends capabilities from the MGDri
 
 <https://bio.tools/mgenrichment> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1033" ;
-            sc:name "Ensembl gene ID" ;
-            sc:sameAs "http://edamontology.org/data_1033" ],
+            sc:additionalType "http://edamontology.org/data_1033" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Ensembl gene ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2298" ;
-            sc:name "Gene ID (HGNC)" ;
-            sc:sameAs "http://edamontology.org/data_2298" ],
+            sc:additionalType "http://edamontology.org/data_3274" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "MGI accession" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3274" ;
-            sc:name "MGI accession" ;
-            sc:sameAs "http://edamontology.org/data_3274" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2298" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Gene ID (HGNC)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3697 ;
@@ -299243,7 +310249,7 @@ MGDrivE 2 is a new simulation platform which extends capabilities from the MGDri
     sc:url "https://ciernialab.shinyapps.io/MGEnrichmentApp/" .
 
 <https://bio.tools/mgescan-ltr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0122,
         edam:topic_0621,
@@ -299257,7 +310263,7 @@ MGDrivE 2 is a new simulation platform which extends capabilities from the MGDri
     sc:url "http://darwin.informatics.indiana.edu/cgi-bin/evolution/ltr.pl" .
 
 <https://bio.tools/mgf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0203,
@@ -299277,7 +310283,7 @@ MGF proteins are classified into 31 groups based on sequence homology. Three, ni
     sc:url "http://www.computationalbiology.cn/MGF/home.html" .
 
 <https://bio.tools/mgfm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -299296,7 +310302,7 @@ MGF proteins are classified into 31 groups based on sequence homology. Three, ni
     biotools:primaryContact "Khadija El Amrani" .
 
 <https://bio.tools/mgfr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0099,
@@ -299316,7 +310322,7 @@ MGF proteins are classified into 31 groups based on sequence homology. Three, ni
     biotools:primaryContact "Khadija El Amrani" .
 
 <https://bio.tools/mggp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3307 ;
     sc:citation <https://doi.org/10.1016/j.jpdc.2017.06.017>,
@@ -299333,14 +310339,13 @@ MGF proteins are classified into 31 groups based on sequence homology. Three, ni
 
 <https://bio.tools/mgi> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1026" ;
-            sc:name "Gene symbol" ;
-            sc:sameAs "http://edamontology.org/data_1026" ] ;
+            sc:additionalType "http://edamontology.org/data_1026" ;
+            sc:name "Gene symbol" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2093" ;
-            sc:name "Data reference" ;
-            sc:sameAs "http://edamontology.org/data_2093" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2093" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Data reference" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0621 ;
     sc:citation <https://doi.org/10.1093/nar/gku967>,
@@ -299356,7 +310361,7 @@ MGF proteins are classified into 31 groups based on sequence homology. Three, ni
     sc:url "http://www.informatics.jax.org/" .
 
 <https://bio.tools/mgip> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -299377,7 +310382,7 @@ MGF proteins are classified into 31 groups based on sequence homology. Three, ni
     biotools:primaryContact "Lee S. Katz" .
 
 <https://bio.tools/mgmapper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3174 ;
@@ -299396,7 +310401,7 @@ MGF proteins are classified into 31 groups based on sequence homology. Three, ni
         "Thomas Sicheritz-Pontén" .
 
 <https://bio.tools/mgms2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3277,
         edam:topic_3474,
@@ -299418,7 +310423,7 @@ A glycolipid mass spectrometry technology has the potential to accurately identi
     sc:url "https://CRAN.R-project.org/package=MGMS2" .
 
 <https://bio.tools/mgraph> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -299439,8 +310444,30 @@ A glycolipid mass spectrometry technology has the potential to accurately identi
     sc:url "https://www.mathworks.com/matlabcentral/fileexchange/14635-mgraph" ;
     biotools:primaryContact "Junbai Wang" .
 
+<https://bio.tools/mgreml> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0611,
+        edam:topic_0625,
+        edam:topic_2885,
+        edam:topic_3517 ;
+    sc:citation <https://doi.org/10.1186/S12859-022-04835-3>,
+        "pmcid:PMC9327374",
+        "pubmed:35896974" ;
+    sc:description "Multivariate estimation of factor structures of complex traits using SNP-based genomic relationships." ;
+    sc:featureList edam:operation_0331,
+        edam:operation_3196,
+        edam:operation_3661 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "MGREML" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/devlaming/mgreml/" .
+
 <https://bio.tools/mgsa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -299459,7 +310486,7 @@ A glycolipid mass spectrometry technology has the potential to accurately identi
     biotools:primaryContact "Sebastian Bauer" .
 
 <https://bio.tools/mgse> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Script" ;
     sc:applicationSubCategory edam:topic_0157,
@@ -299475,7 +310502,7 @@ A glycolipid mass spectrometry technology has the potential to accurately identi
     biotools:primaryContact "Boas Pucker" .
 
 <https://bio.tools/mgsz> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3053 ;
@@ -299491,7 +310518,7 @@ A glycolipid mass spectrometry technology has the potential to accurately identi
     biotools:primaryContact "Pashupati Mishra" .
 
 <https://bio.tools/mgt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0196,
@@ -299517,7 +310544,7 @@ A glycolipid mass spectrometry technology has the potential to accurately identi
     sc:url "https://mgtdb.unsw.edu.au/" .
 
 <https://bio.tools/mgtools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3168,
@@ -299532,7 +310559,7 @@ A glycolipid mass spectrometry technology has the potential to accurately identi
     biotools:primaryContact "Jose R. Valverde" .
 
 <https://bio.tools/mgv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
@@ -299553,8 +310580,31 @@ A glycolipid mass spectrometry technology has the potential to accurately identi
         "Windows" ;
     sc:url "http://www.informatics.jax.org/mgv" .
 
+<https://bio.tools/mgwas-explorer> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0634,
+        edam:topic_2885,
+        edam:topic_3172,
+        edam:topic_3517 ;
+    sc:citation <https://doi.org/10.3390/METABO12060526>,
+        "pmcid:PMC9230867",
+        "pubmed:35736459" ;
+    sc:description "Linking SNPs, Genes, Metabolites, and Diseases for Functional Insights." ;
+    sc:featureList edam:operation_2436,
+        edam:operation_3196,
+        edam:operation_3661,
+        edam:operation_3925 ;
+    sc:isAccessibleForFree true ;
+    sc:name "mGWAS-Explorer" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://www.mgwas.ca" .
+
 <https://bio.tools/mgwt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0091,
@@ -299573,26 +310623,22 @@ A glycolipid mass spectrometry technology has the potential to accurately identi
 
 <https://bio.tools/mgx> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2975" ;
-            sc:name "Nucleic acid sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_2975" ] ;
+            sc:additionalType "http://edamontology.org/data_2975" ;
+            sc:encodingFormat "http://edamontology.org/format_3284" ;
+            sc:name "Nucleic acid sequence (raw)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ],
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:name "Pathway or network" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ],
+            sc:additionalType "http://edamontology.org/data_3028" ;
+            sc:name "Taxonomy" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ],
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:name "Report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3028" ;
-            sc:name "Taxonomy" ;
-            sc:sameAs "http://edamontology.org/data_3028" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_3174 ;
     sc:citation <https://doi.org/10.1186/s40168-018-0460-1>,
@@ -299613,10 +310659,10 @@ A glycolipid mass spectrometry technology has the potential to accurately identi
 
 <https://bio.tools/mhaptools> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3494" ;
-            sc:name "DNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3494" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
+            sc:name "DNA sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3295,
@@ -299635,7 +310681,7 @@ A glycolipid mass spectrometry technology has the potential to accurately identi
     sc:url "https://jiantaoshi.github.io/mHap/index.html" .
 
 <https://bio.tools/mhc-np> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_2830 ;
@@ -299652,7 +310698,7 @@ A glycolipid mass spectrometry technology has the potential to accurately identi
         "Sébastien Giguère" .
 
 <https://bio.tools/mhc-typer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0199,
@@ -299672,11 +310718,11 @@ A glycolipid mass spectrometry technology has the potential to accurately identi
     biotools:primaryContact "Kang Huang" .
 
 <https://bio.tools/mhc2pred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0804,
-        edam:topic_2830 ;
+        edam:topic_3344 ;
     sc:citation "pubmed:18450002" ;
     sc:description "SVM based method for prediction of promiscuous MHC class II binding peptides. The average accuracy of SVM based method for 42 alleles is ~80%. The performence of the method was poorer for few allele due to smaller size of dataset. The performence of the method was tested through 5-fold cross-validation." ;
     sc:featureList edam:operation_0252 ;
@@ -299685,11 +310731,11 @@ A glycolipid mass spectrometry technology has the potential to accurately identi
         "Mac",
         "Windows" ;
     sc:softwareHelp <http://crdd.osdd.net/raghava//mhc2pred/help.html> ;
-    sc:url "http://www.imtech.res.in/raghava/mhc2pred/" ;
+    sc:url "http://webs.iiitd.edu.in/raghava/mhc2pred/" ;
     biotools:primaryContact "Dr. G.P.S. Raghava" .
 
 <https://bio.tools/mhcattnnet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0199,
@@ -299708,20 +310754,35 @@ MHCAttnNet uses a Bi-directional Long Short Term Memory (Bi-LSTM) styled encoder
     sc:name "MHCAttnNet" ;
     sc:url "https://github.com/gopuvenkat/MHCAttnNet" .
 
+<https://bio.tools/mhcbn> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:citation <https://doi.org/10.1093/bioinformatics/btg055>,
+        "pubmed:12651731" ;
+    sc:description "The MHCBN is a curated database consisting of detailed information about Major Histocompatibility Complex (MHC) Binding, Non-binding peptides and T-cell epitopes. The version 4.0 of database provides information about peptides interacting with TAP and MHC linked autoimmune diseases." ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "MHCBN" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/mhcbn/> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/mhcbn/" .
+
 <https://bio.tools/mhccluster> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1353" ;
-            sc:name "Sequence motif" ;
-            sc:sameAs "http://edamontology.org/data_1353" ] ;
+            sc:additionalType "http://edamontology.org/data_1353" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence motif" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0872" ;
-            sc:name "Phylogenetic tree" ;
-            sc:sameAs "http://edamontology.org/data_0872" ],
+            sc:additionalType "http://edamontology.org/data_0872" ;
+            sc:encodingFormat "http://edamontology.org/format_2006" ;
+            sc:name "Phylogenetic tree" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1636" ;
-            sc:name "Heat map" ;
-            sc:sameAs "http://edamontology.org/data_1636" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1636" ;
+            sc:encodingFormat "http://edamontology.org/format_2333" ;
+            sc:name "Heat map" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2830 ;
     sc:citation <https://doi.org/10.1007/s00251-013-0714-9>,
@@ -299742,7 +310803,7 @@ MHCAttnNet uses a Bi-directional Long Short Term Memory (Bi-LSTM) styled encoder
     biotools:primaryContact <http://orcid.org/0000-0001-7885-4311> .
 
 <https://bio.tools/mhcflurry> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0804,
@@ -299761,7 +310822,7 @@ MHCAttnNet uses a Bi-directional Long Short Term Memory (Bi-LSTM) styled encoder
     biotools:primaryContact "Timothy J. O'Donnell" .
 
 <https://bio.tools/mhcii3d> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2275,
@@ -299783,7 +310844,7 @@ The knowledge of MHC II binding peptides is highly desired in immunological rese
     sc:url "http://tools.iedb.org/auto_bench/mhcii/weekly/" .
 
 <https://bio.tools/mhcpred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0749,
@@ -299800,8 +310861,27 @@ The knowledge of MHC II binding peptides is highly desired in immunological rese
     sc:url "http://www.ddg-pharmfac.net/mhcpred/MHCPred/" ;
     biotools:primaryContact "Support" .
 
+<https://bio.tools/mhcroberta> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0218,
+        edam:topic_2830,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1093/BIB/BBAB595>,
+        "pubmed:35443027" ;
+    sc:description "Pan-specific peptide-MHC class I binding prediction through transfer learning with label-agnostic protein sequences." ;
+    sc:featureList edam:operation_0252,
+        edam:operation_0416 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "MHCRoBERTa" ;
+    sc:operatingSystem "Linux",
+        "Mac" ;
+    sc:url "https://github.com/FuxuWang/MHCRoBERTa" .
+
 <https://bio.tools/mhcvision> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -299820,7 +310900,7 @@ The knowledge of MHC II binding peptides is highly desired in immunological rese
     sc:url "https://github.com/PGB-LIV/MHCVision" .
 
 <https://bio.tools/mhcvizpipe> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -299844,7 +310924,7 @@ MhcVizPipe connects the bioinformatic tools NetMHCpan, NetMHCIIpan and GibbsClus
     sc:url "https://github.com/CaronLab/MhcVizPipe" .
 
 <https://bio.tools/mhic> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Library" ;
     sc:applicationSubCategory edam:topic_0102,
@@ -299868,7 +310948,7 @@ In order to have an integrated tool, we developed a Graphical User Interface for
     sc:url "https://github.com/MHi-C" .
 
 <https://bio.tools/mhrwr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_0659,
@@ -299884,7 +310964,7 @@ Package: MHRWR Type: Package Title: MHRWR Prediction of lncRNA-disease associati
     sc:url "https://github.com/yangyq505/MHRWR" .
 
 <https://bio.tools/mi-cnn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3382,
@@ -299902,7 +310982,7 @@ Multiple instance learning based classification for MSI data.""" ;
     sc:url "https://github.com/Vitek-Lab/mi-CNN_MSI" .
 
 <https://bio.tools/mi-maap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0622,
@@ -299923,7 +311003,7 @@ Multiple instance learning based classification for MSI data.""" ;
     sc:url "https://research.cchmc.org/mershalab/MI-MAAP/login/" .
 
 <https://bio.tools/mi-sim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_3524,
         edam:topic_3697 ;
@@ -299940,7 +311020,7 @@ Multiple instance learning based classification for MSI data.""" ;
     biotools:primaryContact "Matthew J. Wade" .
 
 <https://bio.tools/miComplete> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
@@ -299954,27 +311034,8 @@ Multiple instance learning based classification for MSI data.""" ;
     sc:name "miComplete" ;
     sc:url "https://bitbucket.org/evolegiolab/micomplete" .
 
-<https://bio.tools/miR-206_hMCs_miR-206> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0659,
-        edam:topic_0749,
-        edam:topic_2229,
-        edam:topic_3519 ;
-    sc:citation <https://doi.org/10.12659/MSM.918912>,
-        "pubmed:31880296" ;
-    sc:description """miR-206 Inhibits Cell Proliferation and Extracellular Matrix Accumulation by Targeting Hypoxia-Inducible Factor 1-alpha (HIF-1α) in Mesangial Cells Treated with High Glucose.
-
-BACKGROUND The goal of this study was to investigate the expression of miR-206 in human glomerular mesangial cells (hMCs) treated by exposure to high glucose (HG) levels, to assess the influence of miR-206 on the proliferation and extracellular matrix (ECM) deposition of hMCs, and to investigate the potential mechanisms of action. MATERIAL AND METHODS The level of miR-206 was detected by RT-qPCR. MTT assay and colony formation assay were used to assess hMCs cell proliferation ability. Western blotting was carried out to measure the expression of related proteins.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'hMCs miR-206', 'miR-206 hMCs', 'miR-206 mimics miR-206', 'regulated miR-206 hMCs miR-206'""" ;
-    sc:featureList edam:operation_0463,
-        edam:operation_3431 ;
-    sc:name "miR-206 hMCs miR-206" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31880296" .
-
 <https://bio.tools/miR2Diabetes> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0219,
         edam:topic_0625,
         edam:topic_0634,
@@ -299994,7 +311055,7 @@ microRNAs (miRNAs) have been established as critical regulators of the pathogene
     sc:url "http://mir2diabetes.yoonlab.or.kr" .
 
 <https://bio.tools/miRDB> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0659,
@@ -300009,7 +311070,7 @@ microRNAs (miRNAs) have been established as critical regulators of the pathogene
     sc:url "http://mirdb.org" .
 
 <https://bio.tools/miRDRN> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0634,
@@ -300028,64 +311089,8 @@ microRNAs (miRNAs) have been established as critical regulators of the pathogene
     sc:url "http://mirdrn.ncu.edu.tw/mirdrn/" ;
     biotools:primaryContact "Hoong-Chien Lee" .
 
-<https://bio.tools/miRNA> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0659,
-        edam:topic_3170,
-        edam:topic_3316,
-        edam:topic_3512,
-        edam:topic_3518 ;
-    sc:citation <https://doi.org/10.1101/GR.248997.119>,
-        "pmcid:PMC6836743",
-        "pubmed:31645363" ;
-    sc:description """Dynamics of microRNA expression during mouse prenatal development.
-
-miRNAtap: microRNA Targets - Aggregated Predictions.
-
-The package facilitates implementation of workflows requiring miRNA predictions, it allows to integrate ranked miRNA target predictions from multiple sources available online and aggregate them with various methods which improves quality of predictions above any of the single sources. Currently predictions are available for Homo sapiens, Mus musculus and Rattus norvegicus (the last one through homology translation).
-
-# Running maSigPro on miRNAs in hpc.
-
-||| COMMON LINK WITH (PUB. & NAME DIFFERENT) bio.tools/mirnatap (BIOCONDUCTOR.ORG/packages/release/bioc/html/miRNAtap.html).
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'organ-specific', 'miRNAs' (bio.tools/miRNAs), 'embryonic'""" ;
-    sc:featureList edam:operation_0463,
-        edam:operation_3192,
-        edam:operation_3436,
-        edam:operation_3792 ;
-    sc:license "GPL-2.0" ;
-    sc:name "miRNA" ;
-    sc:url "https://bioconductor.org/packages/release/bioc/html/miRNAtap.html" .
-
-<https://bio.tools/miRNA_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0203,
-        edam:topic_0659,
-        edam:topic_2640,
-        edam:topic_3170,
-        edam:topic_3512 ;
-    sc:citation <https://doi.org/10.1038/S41598-019-54358-W>,
-        <https://doi.org/10.1093/BIOINFORMATICS/BTZ940>,
-        "pmcid:PMC6889159",
-        "pubmed:31792281",
-        "pubmed:31860057" ;
-    sc:description """The integrative knowledge base for miRNA-mRNA expression in colorectal cancer.
-
-Complexity measures of the mature miRNA for improving pre-miRNAs prediction.
-
-This is a distribution of the source code used in:.
-
-Jonathan Raad, Georgina Stegmayer and Diego H. Milone, "Complexity measures of the mature for improving pre-miRNAs prediction".
-
-Welcome to the miRNA-mRNA expression atlas: a knowledge base for studying the expression of miRNAs and their target genes in colorectal cancer.
-
-We performed an integrative analysis of miRNA-target gene interactions (MTI) on high-throughput molecular profiling of 295 CRC samples obtained from The Cancer Genome Atlas (TCGA). Our study results in 26,963 correlated MTIs, with focus on the negatively strong correlated MTIs. Our analysis provides a catalogue of MTIs that can serve as a starting point in testing more targeted hypotheses and dealing with CRC functional experiments""" ;
-    sc:featureList edam:operation_0463,
-        edam:operation_3463,
-        edam:operation_3792 ;
-    sc:name "miRNA_autogenerated" ;
-    sc:url "https://mirna-coadread.omics.si/" .
-
 <https://bio.tools/miRNAmotif> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_3170,
@@ -300106,22 +311111,8 @@ We performed an integrative analysis of miRNA-target gene interactions (MTI) on
     sc:softwareHelp <https://github.com/martynaut/mirnamotif/blob/master/README.md> ;
     sc:url "http://mirnamotif.ibch.poznan.pl" .
 
-<https://bio.tools/miRNAs> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0659,
-        edam:topic_3170,
-        edam:topic_3518 ;
-    sc:citation <https://doi.org/10.1093/NAR/GKZ664>,
-        "pubmed:31372646" ;
-    sc:description "> VERY_LOW CONFIDENCE! | > CORRECT NAME OF TOOL COULD ALSO BE 'EISA', 'EMT', 'EMT-regulatory', 'miR-200c' | Extensive transcriptional responses are co-ordinated by microRNAs as revealed by Exon-Intron Split Analysis (EISA) | A collection of scripts associated with the manuscript Cursons et al (2017) - Post-transcriptional control of EMT is coordinated through distributed, combinatorial targeting by multiple microRNAs | Combinatorial miRNAs in breast cancer EMT" ;
-    sc:featureList edam:operation_0463,
-        edam:operation_3792,
-        edam:operation_3800 ;
-    sc:license "MIT" ;
-    sc:name "miRNAs" ;
-    sc:url "https://github.com/DavisLaboratory/Combinatorial_miRNAs" .
-
 <https://bio.tools/miRPathDB> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0602,
@@ -300138,7 +311129,7 @@ Since the initial release of miRPathDB, tremendous progress has been made in the
     sc:url "https://mpd.bioinf.uni-sb.de/" .
 
 <https://bio.tools/miRTarBas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0218,
         edam:topic_0602,
@@ -300159,31 +311150,8 @@ As a database, miRTarBase has accumulated more than three hundred and sixty thou
     sc:name "miRTarBas" ;
     sc:url "http://mirtarbase.mbc.nctu.edu.tw" .
 
-<https://bio.tools/miRTarBase_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0218,
-        edam:topic_0659,
-        edam:topic_0749,
-        edam:topic_3518,
-        edam:topic_3794 ;
-    sc:citation <https://doi.org/10.1093/NAR/GKZ896>,
-        "pubmed:31647101" ;
-    sc:description """updates to the experimentally validated microRNA-target interaction database.
-
-the experimentally validated microRNA-target interactions database.
-
-As a database, miRTarBase has accumulated more than three hundred and sixty thousand miRNA-target interactions (MTIs), which are collected by manually surveying pertinent literature after NLP of the text systematically to filter research articles related to functional studies of miRNAs. Generally, the collected MTIs are validated experimentally by reporter assay, western blot, microarray and next-generation sequencing experiments. While containing the largest amount of validated MTIs, the miRTarBase provides the most updated collection by comparing with other similar, previously developed databases.
-
-||| NAME EQUAL TO (PUB. DIFFERENT) bio.tools/mirtarbase.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'miRTarBase 2020'""" ;
-    sc:featureList edam:operation_0463,
-        edam:operation_2428,
-        edam:operation_3792 ;
-    sc:name "miRTarBase_autogenerated" ;
-    sc:url "http://miRTarBase.cuhk.edu.cn/" .
-
 <https://bio.tools/miRTissue> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0108,
@@ -300207,7 +311175,7 @@ As a database, miRTarBase has accumulated more than three hundred and sixty thou
     biotools:primaryContact "Translational Bioinformatics Laboratory at CNR-ICAR" .
 
 <https://bio.tools/miRTop> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0659,
@@ -300228,7 +311196,7 @@ As a database, miRTarBase has accumulated more than three hundred and sixty thou
     biotools:primaryContact <https://orcid.org/0000-0002-3859-3249> .
 
 <https://bio.tools/miRTrace> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_3170,
@@ -300251,7 +311219,7 @@ As a database, miRTarBase has accumulated more than three hundred and sixty thou
     sc:url "https://github.com/friedlanderlab/mirtrace" .
 
 <https://bio.tools/miRWoods> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0659,
@@ -300271,7 +311239,7 @@ MicroRNAs are conserved, endogenous small RNAs with critical post-transcriptiona
     sc:url "https://github.com/hendrixlab/miRWoods" .
 
 <https://bio.tools/miRcode> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0203,
@@ -300295,7 +311263,7 @@ MiRcode provides "whole transcriptome" human microRNA target predictions based o
     sc:url "http://www.mircode.org/" .
 
 <https://bio.tools/miRmedon> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_3170,
@@ -300310,7 +311278,7 @@ MiRcode provides "whole transcriptome" human microRNA target predictions based o
     sc:url "https://github.com/Amitai88/miRmedon" .
 
 <https://bio.tools/miRspongeR> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0659,
@@ -300331,7 +311299,7 @@ MiRcode provides "whole transcriptome" human microRNA target predictions based o
     sc:url "http://bioconductor.org/packages/release/bioc/html/miRspongeR.html" .
 
 <https://bio.tools/miRsyn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0602,
@@ -300354,7 +311322,7 @@ A novel method for identifying miRNA synergism using multiple-intervention causa
     sc:url "https://github.com/zhangjunpeng411/miRsyn" .
 
 <https://bio.tools/miTRATA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_3170,
@@ -300373,8 +311341,26 @@ A novel method for identifying miRNA synergism using multiple-intervention causa
     sc:url "https://wasabi.ddpsc.org/~apps/ta/" ;
     biotools:primaryContact "Blake C. Meyers" .
 
+<https://bio.tools/mia> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Desktop application" ;
+    sc:applicationSubCategory edam:topic_3344,
+        edam:topic_3382,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1101/2022.01.14.476308> ;
+    sc:description "An Open Source Standalone Deep Learning Application for Microscopic Image Analysis." ;
+    sc:featureList edam:operation_3443 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "MIA" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://mianalyzer.github.io> ;
+    sc:url "https://github.com/MIAnalyzer/MIA" .
+
 <https://bio.tools/miamexpress> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0219,
@@ -300396,8 +311382,54 @@ A novel method for identifying miRNA synergism using multiple-intervention causa
     sc:url "http://www.ebi.ac.uk/microarray/MIAMExpress/miamexpress.html" ;
     biotools:primaryContact "Contact Form" .
 
+<https://bio.tools/miami> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0625,
+        edam:topic_0634,
+        edam:topic_2640,
+        edam:topic_3382,
+        edam:topic_3934 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC414>,
+        "pmcid:PMC9344855",
+        "pubmed:35748713" ;
+    sc:description "Mutual Information-based Analysis of Multiplex Imaging data." ;
+    sc:featureList edam:operation_3443,
+        edam:operation_3463,
+        edam:operation_3659 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "MIAMI" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/sealx017/MIAMI" .
+
+<https://bio.tools/miaome> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0659,
+        edam:topic_3172,
+        edam:topic_3173,
+        edam:topic_3697 ;
+    sc:citation <https://doi.org/10.1016/J.CSBJ.2022.05.024>,
+        "pmcid:PMC9136154",
+        "pubmed:35664224" ;
+    sc:description "Human microbiome affect the host epigenome." ;
+    sc:featureList edam:operation_0463,
+        edam:operation_2421,
+        edam:operation_3792 ;
+    sc:isAccessibleForFree true ;
+    sc:name "MIAOME" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://miaome.idrblab.net/ttd/" .
+
 <https://bio.tools/miarma-seq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0749,
@@ -300418,7 +311450,7 @@ A novel method for identifying miRNA synergism using multiple-intervention causa
     sc:url "http://miarmaseq.idoproteins.com/" .
 
 <https://bio.tools/mib> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0611,
         edam:topic_3385,
@@ -300438,7 +311470,7 @@ A novel method for identifying miRNA synergism using multiple-intervention causa
     biotools:primaryContact <http://orcid.org/0000-0003-2190-4909> .
 
 <https://bio.tools/mib2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -300457,8 +311489,37 @@ A novel method for identifying miRNA synergism using multiple-intervention causa
     sc:url "https://www.mathworks.com/matlabcentral/fileexchange/63402-microscopy-image-browser-2-mib2" ;
     biotools:primaryContact "Ilya Belevich" .
 
+<https://bio.tools/mib2_sever> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2291" ;
+            sc:name "UniProt ID" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1127" ;
+            sc:name "PDB ID" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_2275,
+        edam:topic_2814,
+        edam:topic_3534 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC534>,
+        "pubmed:35904542" ;
+    sc:description "Metal ion-binding site prediction and modeling server." ;
+    sc:featureList edam:operation_0474,
+        edam:operation_3898,
+        edam:operation_3899 ;
+    sc:isAccessibleForFree true ;
+    sc:name "MIB2" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://bioinfo.cmu.edu.tw/MIB2/" .
+
 <https://bio.tools/mibiomics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0769,
@@ -300476,7 +311537,7 @@ A web application for multi-omics analysis.""" ;
     sc:url "https://shiny-bird.univ-nantes.fr/app/Mibiomics" .
 
 <https://bio.tools/micRocounter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_2885,
@@ -300491,7 +311552,7 @@ A web application for multi-omics analysis.""" ;
     sc:url "http://github.com/johnathanlo/micRocounter" .
 
 <https://bio.tools/mica-aligner> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3168 ;
@@ -300504,7 +311565,7 @@ A web application for multi-omics analysis.""" ;
     sc:url "https://github.com/aquaskyline/MICA-aligner" .
 
 <https://bio.tools/micc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3168,
@@ -300522,7 +311583,7 @@ A web application for multi-omics analysis.""" ;
         "Zhang MQ" .
 
 <https://bio.tools/micca> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_3174,
@@ -300546,7 +311607,7 @@ A web application for multi-omics analysis.""" ;
     biotools:primaryContact "Davide Albanese" .
 
 <https://bio.tools/micelle_maker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0153,
         edam:topic_0820,
@@ -300566,7 +311627,7 @@ A web application for multi-omics analysis.""" ;
     biotools:primaryContact "Support" .
 
 <https://bio.tools/micha> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0202,
@@ -300587,7 +311648,7 @@ MICHA (Minimal Information for CHemosensitivity Assay) is a web-based platform t
     sc:url "https://micha-protocol.org" .
 
 <https://bio.tools/micheck> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3339,
@@ -300605,7 +311666,7 @@ MICHA (Minimal Information for CHemosensitivity Assay) is a web-based platform t
     biotools:primaryContact "Claudine Medigue" .
 
 <https://bio.tools/michelanglo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_3382 ;
@@ -300625,7 +311686,7 @@ Convert PyMOL files, upload PDB files or submit PDB codes and create a webpage t
     sc:url "http://michelanglo.sgc.ox.ac.uk" .
 
 <https://bio.tools/michi-shape-plotter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3304,
@@ -300642,7 +311703,7 @@ Convert PyMOL files, upload PDB files or submit PDB codes and create a webpage t
     biotools:primaryContact "Michele Giugliano" .
 
 <https://bio.tools/michi-tracer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3304,
@@ -300660,7 +311721,7 @@ Convert PyMOL files, upload PDB files or submit PDB codes and create a webpage t
     biotools:primaryContact "Michele Giugliano" .
 
 <https://bio.tools/michip> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0659,
@@ -300680,7 +311741,7 @@ Convert PyMOL files, upload PDB files or submit PDB codes and create a webpage t
     biotools:primaryContact "Jonathon Blake" .
 
 <https://bio.tools/micmic> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0634,
@@ -300697,8 +311758,48 @@ Convert PyMOL files, upload PDB files or submit PDB codes and create a webpage t
     sc:url "https://github.com/ZhangJlab/MICMIC" ;
     biotools:primaryContact "J. Zhang" .
 
+<https://bio.tools/micnet> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0160,
+        edam:topic_0602,
+        edam:topic_3697 ;
+    sc:citation <https://doi.org/10.1371/JOURNAL.PONE.0259756>,
+        "pmcid:PMC9231805",
+        "pubmed:35749381" ;
+    sc:description "Visualizing and unraveling a microbial network." ;
+    sc:featureList edam:operation_3432,
+        edam:operation_3925,
+        edam:operation_3935 ;
+    sc:isAccessibleForFree true ;
+    sc:name "MicNet" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://micnetapplb-1212130533.us-east-1.elb.amazonaws.com" .
+
+<https://bio.tools/micnet_toolbox> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0602,
+        edam:topic_3299,
+        edam:topic_3697 ;
+    sc:citation <https://doi.org/10.1101/2021.11.11.468289> ;
+    sc:description "Visualizing and deconstructing a microbial network." ;
+    sc:featureList edam:operation_3432,
+        edam:operation_3925,
+        edam:operation_3935 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "MicNet toolbox" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/Labevo/MicNetToolbox" .
+
 <https://bio.tools/mico> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0199,
@@ -300713,26 +311814,8 @@ Convert PyMOL files, upload PDB files or submit PDB codes and create a webpage t
     sc:softwareHelp <http://mico.ggc.org/MICO/> ;
     sc:url "http://mico.ggc.org/MICO/SearchEntry.jsp" .
 
-<https://bio.tools/micrIO> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0632,
-        edam:topic_3370,
-        edam:topic_3382 ;
-    sc:citation <https://doi.org/10.1039/C9LC00512A>,
-        "pmcid:PMC6923132",
-        "pubmed:31701110" ;
-    sc:description """an open-source autosampler and fraction collector for automated microfluidic input-output.
-
-Microfluidic devices are an enabling technology for many labs, facilitating a wide range of applications spanning high-throughput encapsulation, molecular separations, and long-term cell culture. In many cases, however, their utility is limited by a 'world-to-chip' barrier that makes it difficult to serially interface samples with these devices. As a result, many researchers are forced to rely on low-throughput, manual approaches for managing device input and output (IO) of samples, reagents, and effluent. Here, we present a hardware-software platform for automated microfluidic IO (micrIO). The platform, which is uniquely compatible with positive-pressure microfluidics, comprises an 'AutoSipper' for input and a 'Fraction Collector' for output.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'world-to-chip', 'hardware-software'""" ;
-    sc:featureList edam:operation_0310 ;
-    sc:name "micrIO" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31701110" .
-
 <https://bio.tools/micro-meta_app> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3382,
@@ -300750,24 +311833,47 @@ Microfluidic devices are an enabling technology for many labs, facilitating a wi
         "Windows" ;
     sc:url "https://github.com/WU-BIMAC/MicroMetaApp.github.io" .
 
+<https://bio.tools/micro-primers> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0632,
+        edam:topic_0769,
+        edam:topic_2885,
+        edam:topic_3056,
+        edam:topic_3168 ;
+    sc:citation <https://doi.org/10.1038/S41598-021-04275-8>,
+        "pmcid:PMC8741888",
+        "pubmed:34997147" ;
+    sc:description "Automating microsatellite screening and primer design from multi-individual libraries using Micro-Primers." ;
+    sc:featureList edam:operation_0308,
+        edam:operation_3196,
+        edam:operation_3237 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "Micro-Primers" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/FilAlves/micro-primers" .
+
 <https://bio.tools/microSysMics> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3494" ;
-            sc:name "DNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3494" ] ;
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:encodingFormat "http://edamontology.org/format_2545" ;
+            sc:name "DNA sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3707" ;
-            sc:name "Biodiversity data" ;
-            sc:sameAs "http://edamontology.org/data_3707" ],
+            sc:additionalType "http://edamontology.org/data_1872" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Taxonomic classification" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3272" ;
-            sc:name "Species tree" ;
-            sc:sameAs "http://edamontology.org/data_3272" ],
+            sc:additionalType "http://edamontology.org/data_3272" ;
+            sc:encodingFormat "http://edamontology.org/format_1910" ;
+            sc:name "Species tree" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1872" ;
-            sc:name "Taxonomic classification" ;
-            sc:sameAs "http://edamontology.org/data_1872" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3707" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Biodiversity data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_3697 ;
     sc:author "Erwan Delage" ;
@@ -300788,7 +311894,7 @@ Microfluidic devices are an enabling technology for many labs, facilitating a wi
         <https://orcid.org/0000-0002-8689-2083> .
 
 <https://bio.tools/microanalyzer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2885,
@@ -300805,7 +311911,7 @@ Microfluidic devices are an enabling technology for many labs, facilitating a wi
     sc:url "https://sourceforge.net/projects/microanalyzer/" .
 
 <https://bio.tools/microarray_retriever> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3518,
@@ -300820,7 +311926,7 @@ Microfluidic devices are an enabling technology for many labs, facilitating a wi
     sc:url "http://www.lgtc.nl/MaRe/" .
 
 <https://bio.tools/microbe_browser> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0102,
@@ -300835,7 +311941,7 @@ Microfluidic devices are an enabling technology for many labs, facilitating a wi
     sc:url "http://microbe.vital-it.ch" .
 
 <https://bio.tools/microbeannotator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0769,
@@ -300855,7 +311961,7 @@ MicrobeAnnotator uses an iterative approach to annotate microbial genomes (Bacte
     sc:url "https://github.com/cruizperez/MicrobeAnnotator" .
 
 <https://bio.tools/microbegps> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3168,
         edam:topic_3174,
@@ -300871,7 +311977,7 @@ MicrobeAnnotator uses an iterative approach to annotate microbial genomes (Bacte
     biotools:primaryContact "Bernhard Y Renard" .
 
 <https://bio.tools/microbench> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_2259,
@@ -300890,7 +311996,7 @@ MicrobeAnnotator uses an iterative approach to annotate microbial genomes (Bacte
     sc:url "https://github.com/alubbock/microbench" .
 
 <https://bio.tools/microbesonline> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -300913,38 +312019,37 @@ MicrobeAnnotator uses an iterative approach to annotate microbial genomes (Bacte
 
 <https://bio.tools/microbetrace> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2914" ;
-            sc:name "Sequence features metadata" ;
-            sc:sameAs "http://edamontology.org/data_2914" ],
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Pathway or network" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ],
+            sc:additionalType "http://edamontology.org/data_0870" ;
+            sc:name "Sequence distance matrix" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1442" ;
-            sc:name "Phylogenetic tree distances" ;
-            sc:sameAs "http://edamontology.org/data_1442" ],
+            sc:additionalType "http://edamontology.org/data_1442" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Phylogenetic tree distances" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0870" ;
-            sc:name "Sequence distance matrix" ;
-            sc:sameAs "http://edamontology.org/data_0870" ],
+            sc:additionalType "http://edamontology.org/data_2914" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Sequence features metadata" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1383" ;
-            sc:name "Nucleic acid sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_1383" ] ;
+            sc:additionalType "http://edamontology.org/data_1383" ;
+            sc:encodingFormat "http://edamontology.org/format_2554" ;
+            sc:name "Nucleic acid sequence alignment" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3424" ;
-            sc:name "Raw image" ;
-            sc:sameAs "http://edamontology.org/data_3424" ],
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Pathway or network" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1383" ;
-            sc:name "Nucleic acid sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_1383" ],
+            sc:additionalType "http://edamontology.org/data_1383" ;
+            sc:encodingFormat "http://edamontology.org/format_2546" ;
+            sc:name "Nucleic acid sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3424" ;
+            sc:encodingFormat "http://edamontology.org/format_3604" ;
+            sc:name "Raw image" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Workbench" ;
     sc:applicationSubCategory edam:topic_0084,
@@ -300982,14 +312087,13 @@ be readily imported, integrated and visualized...no coding required!""" ;
 
 <https://bio.tools/microbial_advanced_database_organisation_micado> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1026" ;
-            sc:name "Gene symbol" ;
-            sc:sameAs "http://edamontology.org/data_1026" ] ;
+            sc:additionalType "http://edamontology.org/data_1026" ;
+            sc:name "Gene symbol" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2093" ;
-            sc:name "Data reference" ;
-            sc:sameAs "http://edamontology.org/data_2093" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2093" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Data reference" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0621 ;
     sc:citation "pubmed:9283758" ;
@@ -301005,7 +312109,7 @@ be readily imported, integrated and visualized...no coding required!""" ;
         "Hélène Chiapello" .
 
 <https://bio.tools/microbial_genome_viewer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0602,
@@ -301026,13 +312130,8 @@ be readily imported, integrated and visualized...no coding required!""" ;
     sc:url "http://www.cmbi.ru.nl/MGV/" ;
     biotools:primaryContact "Robert Kerkhoven" .
 
-<https://bio.tools/microbial_whole_genome_sequencing> a sc:SoftwareApplication ;
-    sc:description "With decades of experience in the fields of genome sequencing, CD Genomics is devoted to providing the accurate and affordable microbial whole genome sequencing service. We combine both Illumina (short reads) and PacBio (long reads) platforms for microbial re-sequencing and complete genome de novo sequencing . Our strong expertise is enhanced by flexible sequencing strategies and professional bioinformatics pipelines.  We can tailor this pipeline to your research interest. If you have additional requirements or questions, please feel free to contact us." ;
-    sc:name "Microbial Whole Genome Sequencing" ;
-    sc:url "https://www.cd-genomics.com/Microbial-Whole-Genome-Sequencing.html" .
-
 <https://bio.tools/microbiome> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3174 ;
     sc:author "Leo Lahti" ;
@@ -301048,7 +312147,7 @@ be readily imported, integrated and visualized...no coding required!""" ;
     biotools:primaryContact "Leo Lahti" .
 
 <https://bio.tools/microbiomeDASim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3174,
         edam:topic_3697,
@@ -301072,7 +312171,7 @@ After installing Jupyter and the appopriate kernel you can access an interactive
     sc:url "http://bioconductor.org/packages/microbiomeDASim" .
 
 <https://bio.tools/microbiomeanalyst> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0091,
@@ -301093,7 +312192,7 @@ Note - MicrobiomeAnalystR is still under development - we cannot guarantee full
     sc:url "https://www.microbiomeanalyst.ca" .
 
 <https://bio.tools/microbiomebpr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0659,
@@ -301116,8 +312215,53 @@ Both the workflows are controlled by bash scripts: amplicon_analysis.sh and meta
     sc:name "MicrobiomeBPR" ;
     sc:url "https://github.com/grimmlab/MicrobiomeBestPracticeReview" .
 
+<https://bio.tools/microbiomegwas> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0625,
+        edam:topic_0659,
+        edam:topic_2885,
+        edam:topic_3517,
+        edam:topic_3697 ;
+    sc:citation <https://doi.org/10.3390/GENES13071224>,
+        "pmcid:PMC9317577",
+        "pubmed:35886007" ;
+    sc:description "MicrobiomeGWAS is a software package for identifying host genetic variants associated with micorbiome distance matrix or beta-diversity. For each SNP, microbiome GWAS tests the main effect or the SNP-environment interaction." ;
+    sc:featureList edam:operation_0484,
+        edam:operation_3196,
+        edam:operation_3659,
+        edam:operation_3891 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-2.0" ;
+    sc:name "microbiomeGWAS" ;
+    sc:operatingSystem "Linux",
+        "Mac" ;
+    sc:url "https://github.com/lsncibb/microbiomeGWAS" .
+
+<https://bio.tools/microbiomemarker> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_3342,
+        edam:topic_3360,
+        edam:topic_3474,
+        edam:topic_3577,
+        edam:topic_3697 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC438>,
+        "pubmed:35771644" ;
+    sc:description "An R/Bioconductor package for microbiome marker identification and visualization." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3435 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "microbiomeMarker" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://bioconductor.org/packages/release/bioc/manuals/microbiomeMarker/man/microbiomeMarker.pdf> ;
+    sc:url "https://www.bioconductor.org/packages/microbiomeMarker" .
+
 <https://bio.tools/microbvs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_2269,
@@ -301138,7 +312282,7 @@ In this folder you'll find code for the R package MicroBVS found in:.
     sc:url "https://github.com/mkoslovsky/MicroBVS" .
 
 <https://bio.tools/microclass> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0637,
@@ -301157,7 +312301,7 @@ In this folder you'll find code for the R package MicroBVS found in:.
     biotools:primaryContact "Lars Snipen" .
 
 <https://bio.tools/microdor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0203,
@@ -301173,7 +312317,7 @@ In this folder you'll find code for the R package MicroBVS found in:.
     sc:url "http://reprod.njmu.edu.cn/cgi-bin/microdor/index.py" .
 
 <https://bio.tools/microdrop> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3053,
@@ -301189,7 +312333,7 @@ In this folder you'll find code for the R package MicroBVS found in:.
     biotools:primaryContact "Noah A Rosenberg" .
 
 <https://bio.tools/microerroranalyzer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2885,
         edam:topic_3053,
@@ -301206,7 +312350,7 @@ In this folder you'll find code for the R package MicroBVS found in:.
     sc:url "http://www.zsl.org/science/software/microerroranalyzer" .
 
 <https://bio.tools/microfootprinter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0204,
@@ -301228,7 +312372,7 @@ In this folder you'll find code for the R package MicroBVS found in:.
     biotools:primaryContact "Martin Tompa" .
 
 <https://bio.tools/microgmt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0196,
@@ -301251,7 +312395,7 @@ MicroGMT is a python based package, which takes either raw sequence reads or ass
     sc:url "https://github.com/qunfengdong/MicroGMT" .
 
 <https://bio.tools/micrographcleaner> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3572 ;
@@ -301266,7 +312410,7 @@ MicrographCleaner (micrograph_cleaner_em) is a python package designed to segmen
     sc:url "https://github.com/rsanchezgarc/micrograph_cleaner_em" .
 
 <https://bio.tools/micrographite> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0085 ;
     sc:citation <https://doi.org/10.1093/nar/gku354>,
@@ -301286,7 +312430,7 @@ MicrographCleaner (micrograph_cleaner_em) is a python package designed to segmen
     biotools:primaryContact "Chiara Romualdi" .
 
 <https://bio.tools/microhapdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0625,
@@ -301305,7 +312449,7 @@ MicroHapDB is a portable database intended for scientists and researchers intere
     sc:url "https://github.com/bioforensics/MicroHapDB/" .
 
 <https://bio.tools/microinspector> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_0749,
@@ -301323,7 +312467,7 @@ MicroHapDB is a portable database intended for scientists and researchers intere
     sc:url "http://bioinfo.uni-plovdiv.bg/microinspector/" .
 
 <https://bio.tools/microkit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0621,
@@ -301347,7 +312491,7 @@ MicroHapDB is a portable database intended for scientists and researchers intere
         "Zexian Liu," .
 
 <https://bio.tools/micromanager> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0611,
         edam:topic_3383 ;
@@ -301363,18 +312507,18 @@ MicroHapDB is a portable database intended for scientists and researchers intere
 
 <https://bio.tools/micromummie> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0925" ;
-            sc:name "Sequence assembly" ;
-            sc:sameAs "http://edamontology.org/data_0925" ],
+            sc:additionalType "http://edamontology.org/data_0925" ;
+            sc:encodingFormat "http://edamontology.org/format_3009" ;
+            sc:name "Sequence assembly" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2887" ;
-            sc:name "Nucleic acid sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2887" ] ;
+            sc:additionalType "http://edamontology.org/data_2887" ;
+            sc:encodingFormat "http://edamontology.org/format_2206" ;
+            sc:name "Nucleic acid sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1270" ;
-            sc:name "Feature table" ;
-            sc:sameAs "http://edamontology.org/data_1270" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1270" ;
+            sc:encodingFormat "http://edamontology.org/format_2305" ;
+            sc:name "Feature table" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3308 ;
     sc:citation <https://doi.org/10.1038/nmeth.2489> ;
@@ -301388,7 +312532,7 @@ MicroHapDB is a portable database intended for scientists and researchers intere
     biotools:primaryContact "Uwe Ohler" .
 
 <https://bio.tools/microp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -301405,14 +312549,13 @@ MicroHapDB is a portable database intended for scientists and researchers intere
 
 <https://bio.tools/micropan> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3497" ;
-            sc:name "DNA sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_3497" ] ;
+            sc:additionalType "http://edamontology.org/data_3497" ;
+            sc:encodingFormat "http://edamontology.org/format_2546" ;
+            sc:name "DNA sequence (raw)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0872" ;
-            sc:name "Phylogenetic tree" ;
-            sc:sameAs "http://edamontology.org/data_0872" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0872" ;
+            sc:name "Phylogenetic tree" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0797,
         edam:topic_3070,
@@ -301436,7 +312579,7 @@ MicroHapDB is a portable database intended for scientists and researchers intere
     sc:url "https://cran.r-project.org/web/packages/micropan/index.html" .
 
 <https://bio.tools/micropattern> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3174,
         edam:topic_3301,
@@ -301454,7 +312597,7 @@ MicroHapDB is a portable database intended for scientists and researchers intere
     biotools:primaryContact "Qinghua Cui" .
 
 <https://bio.tools/microphaser> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0203,
@@ -301473,7 +312616,7 @@ MicroHapDB is a portable database intended for scientists and researchers intere
     sc:url "https://github.com/koesterlab/microphaser" .
 
 <https://bio.tools/microphenodb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0089,
@@ -301489,7 +312632,7 @@ MicroHapDB is a portable database intended for scientists and researchers intere
     sc:url "http://www.liwzlab.cn/microphenodb" .
 
 <https://bio.tools/micropie> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0637,
         edam:topic_3298,
@@ -301510,7 +312653,7 @@ MicroHapDB is a portable database intended for scientists and researchers intere
     biotools:primaryContact "Jin Mao" .
 
 <https://bio.tools/micropilot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3382 ;
     sc:citation <https://doi.org/10.1038/nmeth.1558> ;
@@ -301522,7 +312665,7 @@ MicroHapDB is a portable database intended for scientists and researchers intere
     sc:url "http://www.embl.de/almf/almf_services/hc_screeing/micropilot/" .
 
 <https://bio.tools/micropipe> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0769,
@@ -301544,14 +312687,14 @@ microPIPE was developed to automate high-quality complete bacterial genome assem
 
 <https://bio.tools/micropita> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0078,
@@ -301571,7 +312714,7 @@ microPIPE was developed to automate high-quality complete bacterial genome assem
     biotools:primaryContact "Galaxy Support Team" .
 
 <https://bio.tools/micropower> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3301,
         edam:topic_3697 ;
@@ -301585,7 +312728,7 @@ microPIPE was developed to automate high-quality complete bacterial genome assem
     biotools:primaryContact "Frederic Bushman" .
 
 <https://bio.tools/microrazers> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0622,
@@ -301600,7 +312743,7 @@ microPIPE was developed to automate high-quality complete bacterial genome assem
     biotools:primaryContact "Anne-Katrin Emde" .
 
 <https://bio.tools/microrna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0099,
@@ -301618,14 +312761,8 @@ microPIPE was developed to automate high-quality complete bacterial genome assem
     sc:url "http://bioconductor.org/packages/release/bioc/html/microRNA.html" ;
     biotools:primaryContact "\"James F. Reid\"" .
 
-<https://bio.tools/microrna_expression_profiling_microarray> a sc:SoftwareApplication ;
-    sc:description """"CD Genomics offers a comprehensive microRNA microarray profiling service based on some of the most powerful platforms in this field with unrivaled accuracy and sensitivity.
-miRNA expression profiling came into prominence, in part, because of the expectation that a highly expressed miRNA for a given tissue or cell type (or a developmental stage) is likely to play a regulatory role.Let microRNA and microarray experts perform your analysis in automated laboratories with rigorous quality control and fast turn-around times and advanced data analysis tailored to your research needs and budget.\"""" ;
-    sc:name "MicroRNA Expression Profiling Microarray" ;
-    sc:url "https://www.cd-genomics.com/MicroRNA-Expression-Profiling-Microarray-Service.html" .
-
 <https://bio.tools/microrpm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0659,
@@ -301641,13 +312778,33 @@ miRNA expression profiling came into prominence, in part, because of the expecta
     biotools:primaryContact "Na-Sheng Lin",
         "Wen-Chi Chang" .
 
-<https://bio.tools/microsatellite_genotyping> a sc:SoftwareApplication ;
-    sc:description "CD Genomics has extensive experience in providing support for the selection and design of microsatellite markers for a wide range of plant and animal species. Besides microsatellite genotyping, we also provide genotyping by sequencing (GBS) method, which saves time and resources. CD Genomics provides full microsatellite genotyping service package, including designing and ordering fluorescently labeled primer pairs, primer validation, microsatellite genotyping, as well as data analysis. We can tailor this pipeline to your research interest. If you have additional requirements or questions, please feel free to contact us." ;
-    sc:name "Microsatellite Genotyping" ;
-    sc:url "https://www.cd-genomics.com/Microsatellite-Genotyping-Service.html" .
+<https://bio.tools/microsalmon> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0621,
+        edam:topic_0659,
+        edam:topic_0749,
+        edam:topic_3308,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.3390/NCRNA7040061>,
+        "pmcid:PMC8544657",
+        "pubmed:34698276" ;
+    sc:description "A Comprehensive, Searchable Resource of Predicted MicroRNA Targets and 3'UTR Cis-Regulatory Elements in the Full-Length Sequenced Atlantic Salmon Transcriptome." ;
+    sc:featureList edam:operation_0239,
+        edam:operation_0335,
+        edam:operation_0441,
+        edam:operation_0463,
+        edam:operation_3192 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "MicroSalmon" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://github.com/AndreassenLab/MicroSalmon/" .
 
 <https://bio.tools/microscope> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0622 ;
@@ -301666,7 +312823,7 @@ miRNA expression profiling came into prominence, in part, because of the expecta
     biotools:primaryContact "Bohdan B. Khomtchouk" .
 
 <https://bio.tools/microscope-cockpit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3344,
         edam:topic_3382,
@@ -301685,52 +312842,8 @@ Micron Advanced Imaging ConsortiumMicron Advanced Imaging ConsortiumMicron Advan
     sc:name "Microscope-Cockpit" ;
     sc:url "https://micronoxford.com/python-microscope-cockpit" .
 
-<https://bio.tools/microscopemage> a sc:SoftwareApplication ;
-    edam:has_input edam:data_0925,
-        edam:data_3495 ;
-    edam:has_output edam:data_3002 ;
-    sc:additionalType "Bioinformatics portal",
-        "Web application",
-        "Workbench" ;
-    sc:applicationSubCategory edam:topic_0085,
-        edam:topic_0621,
-        edam:topic_0797,
-        edam:topic_2259,
-        edam:topic_3301 ;
-    sc:citation <https://doi.org/10.1093/bib/bbx113>,
-        <https://doi.org/10.1093/database/bap021>,
-        <https://doi.org/10.1093/nar/gkj406>,
-        <https://doi.org/10.1093/nar/gks1194>,
-        <https://doi.org/10.1093/nar/gkw1101>,
-        <https://doi.org/10.1093/nar/gkz926>,
-        "pubmed:28968784",
-        "pubmed:31647104" ;
-    sc:description """MicroScope is an integrated Web platform for the annotation and exploration of microbial gene functions through genomic, pangenomic and metabolic comparative analysis. 
-
-It supports submissions of newly assembled genomes and metagenomes, and also provides analysis services for RNA-seq data. 
-
-The user interface of MicroScope enables collaborative work in a rich comparative context to improve community-based curation efforts.""" ;
-    sc:featureList edam:operation_0362,
-        edam:operation_2495,
-        edam:operation_3083,
-        edam:operation_3197,
-        edam:operation_3208,
-        edam:operation_3209,
-        edam:operation_3562 ;
-    sc:isAccessibleForFree true ;
-    sc:name "MicroScope - MaGe" ;
-    sc:operatingSystem "Linux",
-        "Mac",
-        "Windows" ;
-    sc:provider "LABGeM - CEA/Genosocope - UMR8030" ;
-    sc:softwareHelp <https://microscope.readthedocs.org/>,
-        <https://www.genoscope.cns.fr/agc/microscope/about/microscopecharter.php> ;
-    sc:termsOfService <https://www.genoscope.cns.fr/agc/microscope/about/services.php> ;
-    sc:url "https://www.genoscope.cns.fr/agc/microscope" ;
-    sc:version "3" .
-
 <https://bio.tools/microscopy-images> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -301748,7 +312861,7 @@ The user interface of MicroScope enables collaborative work in a rich comparativ
     biotools:primaryContact "Fred Sigworth" .
 
 <https://bio.tools/microsniper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0659,
@@ -301764,7 +312877,7 @@ The user interface of MicroScope enables collaborative work in a rich comparativ
     sc:url "http://epicenter.ie-freiburg.mpg.de/services/microsniper/" .
 
 <https://bio.tools/microstate> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3068,
@@ -301784,8 +312897,29 @@ The user interface of MicroScope enables collaborative work in a rich comparativ
     sc:softwareHelp <https://github.com/plus-microstate/toolbox/blob/master/documentation.html> ;
     sc:url "https://github.com/plus-microstate/toolbox" .
 
+<https://bio.tools/microsugar> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0089,
+        edam:topic_0203,
+        edam:topic_0659,
+        edam:topic_0780,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.1016/J.YGENO.2022.110420>,
+        "pubmed:35760231" ;
+    sc:description "A database of comprehensive miRNA target prediction framework for sugarcane (Saccharum officinarum L.)." ;
+    sc:featureList edam:operation_0463,
+        edam:operation_2422,
+        edam:operation_3792 ;
+    sc:isAccessibleForFree true ;
+    sc:name "MicroSugar" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://suc.gene-db.com/#/" .
+
 <https://bio.tools/microtaxi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0637,
@@ -301801,7 +312935,7 @@ The user interface of MicroScope enables collaborative work in a rich comparativ
     sc:url "http://metagenomics.iiserb.ac.in/microtaxi/" .
 
 <https://bio.tools/microtss> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3168,
         edam:topic_3474 ;
@@ -301812,8 +312946,27 @@ The user interface of MicroScope enables collaborative work in a rich comparativ
     sc:name "microTSS" ;
     sc:url "http://www.microrna.gr/microTSS" .
 
+<https://bio.tools/microusv> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0196 ;
+    sc:citation <https://doi.org/10.1016/J.OHX.2020.E00105>,
+        "pmcid:PMC9041221",
+        "pubmed:35495207" ;
+    sc:description "A low-cost platform for indoor marine swarm robotics research." ;
+    sc:featureList edam:operation_0310,
+        edam:operation_2428,
+        edam:operation_3431 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "microUSV" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/CalvinGregory/microUSV/releases/tag/v1.0" .
+
 <https://bio.tools/microvessel-segmentation> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3070,
@@ -301832,7 +312985,7 @@ The user interface of MicroScope enables collaborative work in a rich comparativ
     biotools:primaryContact "Constantino Carlos Reyes-Aldasoro" .
 
 <https://bio.tools/micsa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_3169 ;
@@ -301847,7 +313000,7 @@ The user interface of MicroScope enables collaborative work in a rich comparativ
         "Valentina Boeva" .
 
 <https://bio.tools/mid> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0654 ;
@@ -301861,7 +313014,7 @@ The user interface of MicroScope enables collaborative work in a rich comparativ
     sc:url "http://cqb.pku.edu.cn/ZhuLab/MID/index.html" .
 
 <https://bio.tools/midas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -301880,7 +313033,7 @@ The user interface of MicroScope enables collaborative work in a rich comparativ
         "Gelio Alves" .
 
 <https://bio.tools/midashla> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0154,
@@ -301906,7 +313059,7 @@ The user interface of MicroScope enables collaborative work in a rich comparativ
     sc:url "https://github.com/Genentech/MiDAS" .
 
 <https://bio.tools/midasr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0154,
@@ -301927,7 +313080,7 @@ Human immunogenetic variation in the form of HLA and KIR types has been shown to
     sc:url "https://github.com/Genentech/MiDAS" .
 
 <https://bio.tools/midaw> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0203,
@@ -301942,7 +313095,7 @@ Human immunogenetic variation in the form of HLA and KIR types has been shown to
     sc:url "http://midaw.cribi.unipd.it/dnachip/" .
 
 <https://bio.tools/midb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_3320,
@@ -301957,8 +313110,30 @@ Human immunogenetic variation in the form of HLA and KIR types has been shown to
     sc:name "MIDB" ;
     sc:url "https://midb.pnb.uconn.edu" .
 
+<https://bio.tools/midsin> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_3277,
+        edam:topic_3315,
+        edam:topic_3382 ;
+    sc:citation <https://doi.org/10.1371/JOURNAL.PCBI.1009480>,
+        "pmcid:PMC8553042",
+        "pubmed:34662338" ;
+    sc:description "Measures the concentration of specific infections (SIN) in a virus sample based on a TCID50 endpoint dilution assay." ;
+    sc:featureList edam:operation_2939,
+        edam:operation_3435,
+        edam:operation_3799 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "midSIN" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://midsin.physics.ryerson.ca" .
+
 <https://bio.tools/mieaa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0099,
@@ -301978,7 +313153,7 @@ Human immunogenetic variation in the form of HLA and KIR types has been shown to
     biotools:primaryContact "Backes C" .
 
 <https://bio.tools/miec-svm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0128 ;
@@ -301992,7 +313167,7 @@ Human immunogenetic variation in the form of HLA and KIR types has been shown to
     biotools:primaryContact "Wei Wang" .
 
 <https://bio.tools/mifold> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0097,
@@ -302008,7 +313183,7 @@ Human immunogenetic variation in the form of HLA and KIR types has been shown to
     sc:url "http://www.uea.ac.uk/computing/mifold" .
 
 <https://bio.tools/miframe> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0634,
@@ -302029,7 +313204,7 @@ Human immunogenetic variation in the form of HLA and KIR types has been shown to
     biotools:primaryContact "Keller A" .
 
 <https://bio.tools/miga> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0622 ;
     sc:citation "pubmed:24529207" ;
@@ -302043,7 +313218,7 @@ Human immunogenetic variation in the form of HLA and KIR types has been shown to
     biotools:primaryContact "Ioannis Kavakiotis" .
 
 <https://bio.tools/miga-taxa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0637,
@@ -302060,7 +313235,7 @@ Human immunogenetic variation in the form of HLA and KIR types has been shown to
     biotools:primaryContact "Luis M. Rodriguez-R" .
 
 <https://bio.tools/migenas_toolkit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -302080,8 +313255,34 @@ Human immunogenetic variation in the form of HLA and KIR types has been shown to
         "MIGenAS support",
         "Markus Rampp" .
 
+<https://bio.tools/migene> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1026" ;
+            sc:name "Gene symbol" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_3275" ;
+            sc:name "Phenotype name" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0199,
+        edam:topic_0203,
+        edam:topic_0625,
+        edam:topic_0634,
+        edam:topic_3068 ;
+    sc:citation <https://doi.org/10.21203/RS.3.RS-1216843/V1> ;
+    sc:description "An Evidence-based Database of Genes and Phenotypes of Male Infertility." ;
+    sc:featureList edam:operation_2421,
+        edam:operation_3196 ;
+    sc:isAccessibleForFree true ;
+    sc:name "MIgene" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://midb.geneworks.cn" .
+
 <https://bio.tools/mignon> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0749,
@@ -302101,7 +313302,7 @@ Human immunogenetic variation in the form of HLA and KIR types has been shown to
     biotools:primaryContact <https://orcid.org/0000-0003-3318-120X> .
 
 <https://bio.tools/migraine> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3053,
         edam:topic_3056,
@@ -302118,7 +313319,7 @@ Human immunogenetic variation in the form of HLA and KIR types has been shown to
     biotools:primaryContact "François Rousset" .
 
 <https://bio.tools/migsa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3170,
@@ -302137,7 +313338,7 @@ Human immunogenetic variation in the form of HLA and KIR types has been shown to
     biotools:primaryContact "Juan C. Rodriguez" .
 
 <https://bio.tools/miic> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0622,
@@ -302153,8 +313354,28 @@ Human immunogenetic variation in the form of HLA and KIR types has been shown to
     sc:url "https://cran.r-project.org/web/packages/miic/index.html" ;
     biotools:primaryContact "Nadir Sella" .
 
+<https://bio.tools/miic_web> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0602,
+        edam:topic_2640,
+        edam:topic_3305,
+        edam:topic_3384,
+        edam:topic_3421 ;
+    sc:citation <https://doi.org/10.1038/S41746-022-00647-0>,
+        "pmcid:PMC9365762",
+        "pubmed:35948579" ;
+    sc:description "Interactive exploration of a global clinical network from a large breast cancer cohort." ;
+    sc:featureList edam:operation_0337 ;
+    sc:isAccessibleForFree true ;
+    sc:name "MIIC" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://miic.curie.fr" .
+
 <https://bio.tools/miind> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3304,
         edam:topic_3315,
@@ -302176,7 +313397,7 @@ Human immunogenetic variation in the form of HLA and KIR types has been shown to
     sc:url "https://github.com/dekamps/miind" .
 
 <https://bio.tools/mikado> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3512 ;
@@ -302194,7 +313415,7 @@ Human immunogenetic variation in the form of HLA and KIR types has been shown to
     sc:url "https://github.com/lucventurini/mikado" .
 
 <https://bio.tools/mikan_gb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
@@ -302214,8 +313435,30 @@ Human immunogenetic variation in the form of HLA and KIR types has been shown to
     sc:name "Mikan_GB" ;
     sc:url "https://mikan.dna.affrc.go.jp" .
 
+<https://bio.tools/mikb> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0121,
+        edam:topic_3053,
+        edam:topic_3300,
+        edam:topic_3335,
+        edam:topic_3577 ;
+    sc:citation <https://doi.org/10.1016/J.CSBJ.2021.11.011>,
+        "pmcid:PMC8626632",
+        "pubmed:34900127" ;
+    sc:description "A manually curated and comprehensive knowledge base for myocardial infarction." ;
+    sc:featureList edam:operation_3454,
+        edam:operation_3501,
+        edam:operation_3907 ;
+    sc:isAccessibleForFree true ;
+    sc:name "MIKB" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://www.sysbio.org.cn/mikb/" .
+
 <https://bio.tools/millefy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0203,
@@ -302235,7 +313478,7 @@ Millefy is a tool for visualizing read coverage of single-cell RNA sequensing (s
     sc:url "https://github.com/yuifu/millefy" .
 
 <https://bio.tools/millipede> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0654,
@@ -302252,7 +313495,7 @@ Millefy is a tool for visualizing read coverage of single-cell RNA sequensing (s
     biotools:primaryContact "Alexander J. Hartemink" .
 
 <https://bio.tools/milo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_2229,
@@ -302269,7 +313512,7 @@ Milo is a method for differential abundance analysis on KNN graph from single-ce
     sc:url "https://github.com/MarioniLab/miloR" .
 
 <https://bio.tools/milorgwas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2885,
@@ -302287,7 +313530,7 @@ This package is for Genome Wide Association Studies using a logistic mixed model
     sc:url "https://github.com/genostats/milorGWAS" .
 
 <https://bio.tools/mim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3511 ;
@@ -302302,7 +313545,7 @@ This package is for Genome Wide Association Studies using a logistic mixed model
     sc:url "http://bcb.dfci.harvard.edu/~gcyuan/software.html" .
 
 <https://bio.tools/mimager> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3518 ;
     sc:description "Easily visualize and inspect microarrays for spatial artifacts." ;
@@ -302320,7 +313563,7 @@ This package is for Genome Wide Association Studies using a logistic mixed model
     biotools:primaryContact "Aaron Wolen" .
 
 <https://bio.tools/mimeanto> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0659,
@@ -302337,7 +313580,7 @@ This package is for Genome Wide Association Studies using a logistic mixed model
     biotools:primaryContact "Maureen Smith" .
 
 <https://bio.tools/mimenet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3172,
@@ -302358,7 +313601,7 @@ MiMeNet uses microbial features to predict metabolite output features. To do so,
     sc:url "https://github.com/YDaiLab/MiMeNet" .
 
 <https://bio.tools/mimic> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0196,
@@ -302381,7 +313624,7 @@ MiMeNet uses microbial features to predict metabolite output features. To do so,
     sc:url "https://github.com/ClavelLab/MiMiC" .
 
 <https://bio.tools/mimicknet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3068,
         edam:topic_3384,
@@ -302400,8 +313643,49 @@ The above is a cineloop of cardiac data with conventional delay-and-sum beamform
     sc:name "MimickNet" ;
     sc:url "https://github.com/ouwen/MimickNet" .
 
+<https://bio.tools/mimir> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_3172,
+        edam:topic_3305,
+        edam:topic_3337,
+        edam:topic_3407 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC388>,
+        "pmcid:PMC9344846",
+        "pubmed:35695757" ;
+    sc:description "R-shiny application to infer risk factors and endpoints from Nightingale Health's 1H-NMR Metabolomics data." ;
+    sc:featureList edam:operation_3435,
+        edam:operation_3557 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "MiMIR" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://github.com/DanieleBizzarri/MiMIR/blob/main/man/MANUAL.pdf> ;
+    sc:url "https://github.com/DanieleBizzarri/MiMIR" .
+
+<https://bio.tools/mimml> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_3336,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1093/BIB/BBAB499>,
+        "pubmed:34882225" ;
+    sc:description "Accelerating bioactive peptide discovery via mutual information-based meta-learning." ;
+    sc:featureList edam:operation_3435 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "MIMML" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/TearsWaiting/MIMML" .
+
 <https://bio.tools/mimo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2259 ;
@@ -302416,7 +313700,7 @@ The above is a cineloop of cardiac data with conventional delay-and-sum beamform
     sc:url "http://www.picb.ac.cn/ClinicalGenomicNTW/MIMO.html" .
 
 <https://bio.tools/mimodb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0154,
@@ -302438,14 +313722,14 @@ The above is a cineloop of cardiac data with conventional delay-and-sum beamform
 
 <https://bio.tools/mimosa> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3108" ;
-            sc:name "Experimental measurement" ;
-            sc:sameAs "http://edamontology.org/data_3108" ] ;
+            sc:additionalType "http://edamontology.org/data_3108" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Experimental measurement" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3361 ;
@@ -302467,10 +313751,9 @@ The above is a cineloop of cardiac data with conventional delay-and-sum beamform
 
 <https://bio.tools/mimosa2> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:name "Sequence variations" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
@@ -302494,7 +313777,7 @@ The above is a cineloop of cardiac data with conventional delay-and-sum beamform
     sc:url "http://elbo-spice.cs.tau.ac.il/shiny/MIMOSA2shiny/" .
 
 <https://bio.tools/mimsi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2640,
@@ -302512,7 +313795,7 @@ A deep, multiple instance learning based classifier for identifying Microsatelli
     sc:url "https://github.com/mskcc/mimsi" .
 
 <https://bio.tools/minactionpath> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -302534,7 +313817,7 @@ A deep, multiple instance learning based classifier for identifying Microsatelli
     biotools:primaryContact "Marc Delarue Contact Form" .
 
 <https://bio.tools/minas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0082,
@@ -302556,16 +313839,31 @@ A deep, multiple instance learning based classifier for identifying Microsatelli
     sc:url "http://www.minas.uzh.ch/" ;
     biotools:primaryContact "Joachim Schnabl" .
 
+<https://bio.tools/minced> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0157,
+        edam:topic_0622,
+        edam:topic_3174 ;
+    sc:description "MinCED is a program to find Clustered Regularly Interspaced Short Palindromic Repeats (CRISPRs) in full genomes or environmental datasets such as assembled contigs from metagenomes." ;
+    sc:featureList edam:operation_0237 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "minced" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/ctSkennerton/minced" .
+
 <https://bio.tools/mindboggle> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3442" ;
-            sc:name "MRI image" ;
-            sc:sameAs "http://edamontology.org/data_3442" ] ;
+            sc:additionalType "http://edamontology.org/data_3442" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "MRI image" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3334,
         edam:topic_3444 ;
@@ -302583,10 +313881,9 @@ A deep, multiple instance learning based classifier for identifying Microsatelli
 
 <https://bio.tools/mindel> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2975" ;
-            sc:name "Nucleic acid sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_2975" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2975" ;
+            sc:name "Nucleic acid sequence (raw)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3168 ;
@@ -302607,7 +313904,7 @@ A deep, multiple instance learning based classifier for identifying Microsatelli
     biotools:primaryContact "Dr. Yuanda Lv" .
 
 <https://bio.tools/mindrug> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0209,
@@ -302630,14 +313927,14 @@ A deep, multiple instance learning based classifier for identifying Microsatelli
 
 <https://bio.tools/mindthegap> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2975" ;
-            sc:name "Nucleic acid sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_2975" ] ;
+            sc:additionalType "http://edamontology.org/data_2975" ;
+            sc:encodingFormat "http://edamontology.org/format_2182" ;
+            sc:name "Nucleic acid sequence (raw)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Nucleic acid sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btu545> ;
@@ -302655,7 +313952,7 @@ A deep, multiple instance learning based classifier for identifying Microsatelli
     biotools:primaryContact "Claire Lemaitre" .
 
 <https://bio.tools/mindy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -302672,16 +313969,39 @@ A deep, multiple instance learning based classifier for identifying Microsatelli
     sc:url "http://wiki.c2b2.columbia.edu/califanolab/index.php/Software/MINDY2?" ;
     biotools:primaryContact "Andrea Califano" .
 
+<https://bio.tools/mine> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_3172,
+        edam:topic_3292,
+        edam:topic_3407,
+        edam:topic_3473 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC331>,
+        "pmcid:PMC9237697",
+        "pubmed:35595247" ;
+    sc:description "Enhanced biochemical coverage for peak identification in untargeted metabolomics." ;
+    sc:featureList edam:operation_2421,
+        edam:operation_2422,
+        edam:operation_3803 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "MINE" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://mine-api.readthedocs.io/en/latest/> ;
+    sc:softwareVersion "2.0" ;
+    sc:url "https://minedatabase.ci.northwestern.edu" .
+
 <https://bio.tools/mineXpert> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ] ;
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:name "Mass spectrometry data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Script" ;
     sc:applicationSubCategory edam:topic_3292,
@@ -302707,7 +314027,7 @@ A deep, multiple instance learning based classifier for identifying Microsatelli
     sc:url "http://msxpertsuite.org" .
 
 <https://bio.tools/mineica> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -302728,18 +314048,18 @@ A deep, multiple instance learning based classifier for identifying Microsatelli
 
 <https://bio.tools/minepath> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ],
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Gene expression data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Gene expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ] ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:encodingFormat "http://edamontology.org/format_2013" ;
+            sc:name "Pathway or network" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:encodingFormat "http://edamontology.org/format_3166" ;
+            sc:name "Pathway or network" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3307 ;
     sc:citation <https://doi.org/10.1093/nar/gkx278>,
@@ -302763,8 +314083,16 @@ MinePath identifies of differentially expressed functional paths or sub-paths wi
     sc:url "http://www.minepath.org/" ;
     biotools:primaryContact "Lefteris Koumakis" .
 
+<https://bio.tools/mineprot> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:description "AI systems represented by AlphaFold are rapidly expanding the data scale of protein structure modelling, hence how to curate these novel high-throughput data has emerged as a challenge. Here we provide our solution, MineProt, a project to help researchers efficiently set up custom protein servers to facilitate data sharing. It enables users to build their own server in simple steps, run almost out-of-the-box scripts to annotate and curate their proteins, visualize, browse and search their data via a user-friendly online interface, and utilize plugins to extend the functionality of server. Its current version can directly transform results of AlphaFold and ColabFold into a fully functional website, while supporting any other data compatible with its standard as well. MineProt is open-sourced at https://github.com/huiwenke/MineProt." ;
+    sc:name "MineProt" ;
+    sc:softwareHelp <https://github.com/huiwenke/MineProt/wiki> ;
+    sc:softwareVersion "0.1.2" ;
+    sc:url "https://github.com/huiwenke/MineProt" .
+
 <https://bio.tools/miner> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0084,
@@ -302782,7 +314110,7 @@ MinePath identifies of differentially expressed functional paths or sub-paths wi
     sc:url "http://coit-apple01.uncc.edu/MINER/" .
 
 <https://bio.tools/minet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0602 ;
@@ -302799,7 +314127,7 @@ MinePath identifies of differentially expressed functional paths or sub-paths wi
     biotools:primaryContact "Patrick E. Meyer" .
 
 <https://bio.tools/minfi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0654,
@@ -302822,7 +314150,7 @@ MinePath identifies of differentially expressed functional paths or sub-paths wi
     biotools:primaryContact <http://orcid.org/0000-0003-0086-0687> .
 
 <https://bio.tools/mini-covidnet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3384,
@@ -302836,16 +314164,40 @@ MinePath identifies of differentially expressed functional paths or sub-paths wi
     sc:url "https://github.com/navchetan-awasthi/Mini-COVIDNet" ;
     biotools:primaryContact <https://orcid.org/0000-0003-4810-352X> .
 
+<https://bio.tools/mini-isoqlr> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1193" ;
+            sc:encodingFormat "http://edamontology.org/format_2545" ;
+            sc:name "Tool name (FASTA)" ] ;
+    bsc:output [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1711" ;
+            sc:encodingFormat "http://edamontology.org/format_3508" ;
+            sc:name "Sequence alignment image" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0091 ;
+    sc:citation <https://doi.org/10.1101/2022.03.01.482488> ;
+    sc:description "This pipeline was developed to detect and quantify isoforms from the expression of minigenes, whose cDNA was sequenced using Oxford Nanopore Technologies (ONT)." ;
+    sc:featureList edam:operation_3182,
+        edam:operation_3800 ;
+    sc:isAccessibleForFree true ;
+    sc:license "CC-BY-NC-SA-4.0" ;
+    sc:name "Mini-IsoQLR" ;
+    sc:operatingSystem "Linux" ;
+    sc:softwareHelp <https://github.com/TBLabFJD/Mini-IsoQLR> ;
+    sc:url "https://github.com/TBLabFJD/Mini-IsoQLR" ;
+    biotools:primaryContact <https://orcid.org/0000-0003-4099-9421> .
+
 <https://bio.tools/minia> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2975" ;
-            sc:name "Nucleic acid sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_2975" ] ;
+            sc:additionalType "http://edamontology.org/data_2975" ;
+            sc:encodingFormat "http://edamontology.org/format_2182" ;
+            sc:name "Nucleic acid sequence (raw)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0925" ;
-            sc:name "Sequence assembly" ;
-            sc:sameAs "http://edamontology.org/data_0925" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0925" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence assembly" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196 ;
     sc:citation <https://doi.org/10.1186/1748-7188-9-2> ;
@@ -302862,8 +314214,24 @@ MinePath identifies of differentially expressed functional paths or sub-paths wi
     biotools:primaryContact "Guillaume Rizk",
         "Rayan Chikhi" .
 
+<https://bio.tools/miniasm> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0196,
+        edam:topic_0622 ;
+    sc:citation <https://doi.org/10.1093/bioinformatics/btw152>,
+        "pmcid:PMC4937194",
+        "pubmed:27153593" ;
+    sc:description "Miniasm is a very fast OLC-based de novo assembler for noisy long reads. It takes all-vs-all read self-mappings (typically by minimap) as input and outputs an assembly graph in the GFA format." ;
+    sc:featureList edam:operation_0524 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "miniasm" ;
+    sc:operatingSystem "Linux" ;
+    sc:url "https://github.com/lh3/miniasm" .
+
 <https://bio.tools/miniception> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3168 ;
@@ -302878,7 +314246,7 @@ This repo contains reference implementation and analysis codes for the manuscrip
     sc:url "https://github.com/kingsford-group/miniception" .
 
 <https://bio.tools/minicore> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2229,
         edam:topic_3170 ;
@@ -302894,7 +314262,7 @@ This repo contains reference implementation and analysis codes for the manuscrip
         <https://orcid.org/0000-0003-2437-1976> .
 
 <https://bio.tools/minimac2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3053 ;
@@ -302907,7 +314275,7 @@ This repo contains reference implementation and analysis codes for the manuscrip
     sc:url "http://genome.sph.umich.edu/wiki/Minimac2" .
 
 <https://bio.tools/minimac3> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3056 ;
     sc:citation <https://doi.org/10.1038/ng.3656> ;
@@ -302920,7 +314288,7 @@ This repo contains reference implementation and analysis codes for the manuscrip
     sc:url "http://genome.sph.umich.edu/wiki/Minimac3" .
 
 <https://bio.tools/minimac4> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3168 ;
@@ -302933,7 +314301,7 @@ This repo contains reference implementation and analysis codes for the manuscrip
     sc:url "https://genome.sph.umich.edu/wiki/Minimac4" .
 
 <https://bio.tools/minimap2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/bty191>,
@@ -302948,7 +314316,7 @@ This repo contains reference implementation and analysis codes for the manuscrip
     sc:url "https://github.com/lh3/minimap2" .
 
 <https://bio.tools/minimum-redundancy-maximum-relevance-feature-selection> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3070,
@@ -302965,7 +314333,7 @@ This repo contains reference implementation and analysis codes for the manuscrip
     biotools:primaryContact "Hanchuan Peng" .
 
 <https://bio.tools/minimum-spanning-tree> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344 ;
@@ -302982,7 +314350,7 @@ This repo contains reference implementation and analysis codes for the manuscrip
     biotools:primaryContact "Ashim Gautam" .
 
 <https://bio.tools/minimumdistance> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0625,
@@ -303001,7 +314369,7 @@ This repo contains reference implementation and analysis codes for the manuscrip
     biotools:primaryContact "Robert B Scharpf" .
 
 <https://bio.tools/minion_synthmetagenome> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3168,
@@ -303015,16 +314383,29 @@ This repo contains reference implementation and analysis codes for the manuscrip
     sc:url "https://github.com/mw55309/MinION_SynthMetagenome" ;
     biotools:primaryContact "Bonnie L. Brown" .
 
+<https://bio.tools/miniprot> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0080,
+        edam:topic_0160 ;
+    sc:description "Miniprot aligns a protein sequence against a genome with affine gap penalty, splicing and frameshift. It is primarily intended for annotating protein-coding genes in a new species using known genes from other species." ;
+    sc:featureList edam:operation_0292,
+        edam:operation_2479 ;
+    sc:license "MIT" ;
+    sc:name "miniprot" ;
+    sc:softwareVersion "0.3" ;
+    sc:url "https://github.com/lh3/miniprot" .
+
 <https://bio.tools/minirmd> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3494" ;
-            sc:name "DNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3494" ] ;
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "DNA sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3494" ;
-            sc:name "DNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3494" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "DNA sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0003 ;
     sc:description "Minirmd is a tool to fast remove duplicate reads." ;
@@ -303037,7 +314418,7 @@ This repo contains reference implementation and analysis codes for the manuscrip
     sc:url "https://github.com/yuansliu/minirmd" .
 
 <https://bio.tools/minmlst> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0089,
@@ -303060,7 +314441,7 @@ minMLST is a machine-learning based methodology for identifying a minimal subset
     sc:url "https://pypi.org/project/minmlst/" .
 
 <https://bio.tools/minmotif_miner> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0154,
@@ -303081,8 +314462,30 @@ minMLST is a machine-learning based methodology for identifying a minimal subset
         "Windows" ;
     sc:url "http://minimotifminer.org" .
 
+<https://bio.tools/minn-dti> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_3336,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC377>,
+        "pmcid:PMC9272808",
+        "pubmed:35652721" ;
+    sc:description "Effective drug-target interaction prediction with mutual interaction neural network." ;
+    sc:featureList edam:operation_0272,
+        edam:operation_3094,
+        edam:operation_3216,
+        edam:operation_3938 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "MINN-DTI" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/admislf/MINN-DTI" .
+
 <https://bio.tools/minnetrank> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0203,
@@ -303101,7 +314504,7 @@ minMLST is a machine-learning based methodology for identifying a minimal subset
     sc:url "https://github.com/weitinging/MinNetRank" .
 
 <https://bio.tools/minnow> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3512,
@@ -303118,18 +314521,18 @@ minMLST is a machine-learning based methodology for identifying a minimal subset
 
 <https://bio.tools/minos> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3494" ;
-            sc:name "DNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3494" ],
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "DNA sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3108" ;
-            sc:name "Experimental measurement" ;
-            sc:sameAs "http://edamontology.org/data_3108" ] ;
+            sc:additionalType "http://edamontology.org/data_3108" ;
+            sc:encodingFormat "http://edamontology.org/format_1931" ;
+            sc:name "Experimental measurement" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3494" ;
-            sc:name "DNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3494" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "DNA sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0625,
@@ -303149,7 +314552,7 @@ minMLST is a machine-learning based methodology for identifying a minimal subset
     sc:url "https://github.com/iqbal-lab-org/minos" .
 
 <https://bio.tools/minotour> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0769,
@@ -303171,7 +314574,7 @@ minMLST is a machine-learning based methodology for identifying a minimal subset
     sc:url "http://137.44.59.170" .
 
 <https://bio.tools/minpath> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3174,
@@ -303191,14 +314594,13 @@ minMLST is a machine-learning based methodology for identifying a minimal subset
 
 <https://bio.tools/mint> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2526" ;
-            sc:name "Text data" ;
-            sc:sameAs "http://edamontology.org/data_2526" ] ;
+            sc:additionalType "http://edamontology.org/data_2526" ;
+            sc:name "Text data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0906" ;
-            sc:name "Protein interaction data" ;
-            sc:sameAs "http://edamontology.org/data_0906" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0906" ;
+            sc:encodingFormat "http://edamontology.org/format_3158" ;
+            sc:name "Protein interaction data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
@@ -303228,8 +314630,31 @@ minMLST is a machine-learning based methodology for identifying a minimal subset
     sc:url "https://mint.bio.uniroma2.it/" ;
     biotools:primaryContact <https://orcid.org/0000-0001-5084-9000> .
 
+<https://bio.tools/mintia> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0196,
+        edam:topic_0203,
+        edam:topic_3174,
+        edam:topic_3697,
+        edam:topic_3837 ;
+    sc:citation <https://doi.org/10.7717/PEERJ.11885>,
+        "pmcid:PMC8483015",
+        "pubmed:34692239" ;
+    sc:description "A metagenomic INserT integrated assembly and annotation tool." ;
+    sc:featureList edam:operation_0310,
+        edam:operation_0362,
+        edam:operation_2422 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "MINTIA" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/Bios4Biol/MINTIA" .
+
 <https://bio.tools/mintie> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2640,
@@ -303254,7 +314679,7 @@ minMLST is a machine-learning based methodology for identifying a minimal subset
     biotools:primaryContact <https://orcid.org/0000-0001-9788-5690> .
 
 <https://bio.tools/mintmap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_2229,
@@ -303272,7 +314697,7 @@ minMLST is a machine-learning based methodology for identifying a minimal subset
     biotools:primaryContact "Isidore Rigoutsos" .
 
 <https://bio.tools/mintyper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
@@ -303291,8 +314716,33 @@ MINTyper is a tools designed to quickly a distance matrix from a set of input se
     sc:name "MINTyper" ;
     sc:url "https://cge.cbs.dtu.dk/services/MINTyper" .
 
+<https://bio.tools/mio> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0602,
+        edam:topic_0659,
+        edam:topic_2640,
+        edam:topic_3360 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC366>,
+        "pmcid:PMC9272810",
+        "pubmed:35642895" ;
+    sc:description "MicroRNA target analysis system for Immuno-Oncology." ;
+    sc:featureList edam:operation_0252,
+        edam:operation_0463,
+        edam:operation_3659,
+        edam:operation_3792 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "MIO" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://mio.icbi.at" .
+
 <https://bio.tools/miodin> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0749,
@@ -303313,7 +314763,7 @@ R software package for integration of multi-omics data""" ;
     sc:url "https://gitlab.com/algoromics/miodin" .
 
 <https://bio.tools/miolite> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2258,
         edam:topic_2259,
@@ -303335,8 +314785,27 @@ R software package for integration of multi-omics data""" ;
     sc:url "http://miolite2.iceht.forth.gr" ;
     biotools:primaryContact "Maria Klapa" .
 
+<https://bio.tools/miom> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0602,
+        edam:topic_3172,
+        edam:topic_3308 ;
+    sc:description "MIOM (Mixed Integer Optimization for Metabolism) is a python library for creating and solving complex optimization problems using genome-scale metabolic networks, in just a few lines. It offers a high-level API that leverages the power of modern Mixed Integer Optimization (MIO) solvers to easily define steady-state metabolic optimization problems, from simple Flux Balance Analysis (FBA) simulations, to more complex problems, such as sparse FBA or context-specific reconstruction algorithms, and solve them the required level of optimality." ;
+    sc:featureList edam:operation_3660 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "MIOM" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://metexplore.github.io/miom/> ;
+    sc:softwareVersion "0.9.0-beta9" ;
+    sc:url "https://github.com/metexplore/miom" ;
+    biotools:primaryContact <https://orcid.org/0000-0002-4938-4418> .
+
 <https://bio.tools/mip_scaffolder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0622,
@@ -303355,7 +314824,7 @@ R software package for integration of multi-omics data""" ;
     biotools:primaryContact "Leena Salmela" .
 
 <https://bio.tools/mipav> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0611,
@@ -303376,7 +314845,7 @@ R software package for integration of multi-omics data""" ;
         "Ideas for features" .
 
 <https://bio.tools/mipgen> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0632,
@@ -303392,7 +314861,7 @@ R software package for integration of multi-omics data""" ;
         "Jay Shendure" .
 
 <https://bio.tools/mipmoddb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0160,
@@ -303413,7 +314882,7 @@ R software package for integration of multi-omics data""" ;
     biotools:primaryContact "Contact form" .
 
 <https://bio.tools/mipp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0623,
@@ -303432,7 +314901,7 @@ R software package for integration of multi-omics data""" ;
     biotools:primaryContact "Sukwoo Kim" .
 
 <https://bio.tools/mippie> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0128,
@@ -303455,7 +314924,7 @@ Welcome to MIPPIE, a web tool to generate reliable and meaningful mouse protein-
     sc:url "https://cbdm.uni-mainz.de/mippie" .
 
 <https://bio.tools/mipred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_3500,
@@ -303467,7 +314936,7 @@ Welcome to MIPPIE, a web tool to generate reliable and meaningful mouse protein-
     sc:url "http://www.bioinf.seu.edu.cn/miRNA/" .
 
 <https://bio.tools/miprip> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0602,
@@ -303487,7 +314956,7 @@ MIPRIP: The Mixed Integer linear Programming based Regulatory Interaction Predic
     sc:url "https://github.com/KoenigLabNM/MIPRIP" .
 
 <https://bio.tools/miqc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2229,
@@ -303504,7 +314973,7 @@ MIPRIP: The Mixed Integer linear Programming based Regulatory Interaction Predic
     biotools:primaryContact <https://orcid.org/0000-0002-7858-0231> .
 
 <https://bio.tools/miqoGraph> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_3056 ;
@@ -303517,7 +314986,7 @@ Abstract Admixture graphs represent the genetic relationship between a set of po
     sc:url "https://github.com/juliayyan/PhylogeneticTrees.jl" .
 
 <https://bio.tools/mir-at> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0659,
@@ -303533,7 +315002,7 @@ Abstract Admixture graphs represent the genetic relationship between a set of po
     sc:url "http://cptweb.cpt.wayne.edu/miR-AT/search.jsp" .
 
 <https://bio.tools/mir-island> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_0780,
@@ -303549,7 +315018,7 @@ Abstract Admixture graphs represent the genetic relationship between a set of po
     sc:url "https://github.com/janeyurigao/miR-Island" .
 
 <https://bio.tools/mir-prefer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0659,
@@ -303566,7 +315035,7 @@ Abstract Admixture graphs represent the genetic relationship between a set of po
     sc:url "http://www.cse.msu.edu/~leijikai/mir-prefer/" .
 
 <https://bio.tools/mir-tv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0659,
@@ -303586,7 +315055,7 @@ MicroRNAs (miRNAs) have been found in many organisms and play essential roles in
     sc:url "http://mirtv.ibms.sinica.edu.tw" .
 
 <https://bio.tools/mir2gene> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0659,
@@ -303602,7 +315071,7 @@ MicroRNAs (miRNAs) have been found in many organisms and play essential roles in
     sc:url "http://www.cuilab.cn/mir2gene" .
 
 <https://bio.tools/mir2go> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0204,
@@ -303619,7 +315088,7 @@ MicroRNAs (miRNAs) have been found in many organisms and play essential roles in
     biotools:primaryContact "Yan Cui" .
 
 <https://bio.tools/mirTime> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_3170,
@@ -303641,7 +315110,7 @@ MicroRNAs (miRNAs) have been found in many organisms and play essential roles in
     biotools:primaryContact "Sun Kim" .
 
 <https://bio.tools/mir_path> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0659,
@@ -303657,7 +315126,7 @@ MicroRNAs (miRNAs) have been found in many organisms and play essential roles in
     sc:url "http://comp-sysbio.org/miR_Path/" .
 
 <https://bio.tools/mira> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3170 ;
@@ -303676,7 +315145,7 @@ MicroRNAs (miRNAs) have been found in many organisms and play essential roles in
     biotools:primaryContact "Bastien Chevreux" .
 
 <https://bio.tools/mira-plant> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0659,
@@ -303692,7 +315161,7 @@ MicroRNAs (miRNAs) have been found in many organisms and play essential roles in
     biotools:primaryContact "Michael Huttner" .
 
 <https://bio.tools/mirabel> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0659,
@@ -303712,7 +315181,7 @@ A simple and efficient miRNA target prediction tool.""" ;
     sc:url "http://bioinfo.univ-rouen.fr/mirabel/" .
 
 <https://bio.tools/mirach> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2259 ;
@@ -303728,7 +315197,7 @@ A simple and efficient miRNA target prediction tool.""" ;
     biotools:primaryContact "Masao Nagasaki" .
 
 <https://bio.tools/miracle> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_3518 ;
@@ -303744,7 +315213,7 @@ A simple and efficient miRNA target prediction tool.""" ;
     biotools:primaryContact "Markus List" .
 
 <https://bio.tools/miracle-rna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0659,
@@ -303765,7 +315234,7 @@ A simple and efficient miRNA target prediction tool.""" ;
         "Ke Deng" .
 
 <https://bio.tools/miract> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0203,
@@ -303782,8 +315251,32 @@ A simple and efficient miRNA target prediction tool.""" ;
     sc:name "mirAct" ;
     sc:url "http://sysbio.ustc.edu.cn/software/mirAct" .
 
+<https://bio.tools/miragdb> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0204,
+        edam:topic_0659,
+        edam:topic_0749,
+        edam:topic_3308,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.3389/FIMMU.2022.863110>,
+        "pmcid:PMC8987502",
+        "pubmed:35401578" ;
+    sc:description "A Knowledgebase of RAG Regulators." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_0463,
+        edam:operation_3192,
+        edam:operation_3792 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "miRAGDB" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://52.4.112.252/shiny/miragdb/" .
+
 <https://bio.tools/mirage> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -303804,7 +315297,7 @@ A simple and efficient miRNA target prediction tool.""" ;
     biotools:primaryContact <http://orcid.org/0000-0003-0867-8986> .
 
 <https://bio.tools/mirage-evol> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0623,
@@ -303824,7 +315317,7 @@ Mirage is ancestral genome estimation software with high accuracy based on a phy
     sc:url "https://github.com/fukunagatsu/Mirage" .
 
 <https://bio.tools/miranalyzer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0659,
@@ -303843,7 +315336,7 @@ Mirage is ancestral genome estimation software with high accuracy based on a phy
     sc:url "http://bioinfo2.ugr.es/miRanalyzer/miRanalyzer.php" .
 
 <https://bio.tools/miranno> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0602,
@@ -303863,7 +315356,7 @@ Mirage is ancestral genome estimation software with high accuracy based on a phy
     sc:url "https://ophid.utoronto.ca/miRAnno/" .
 
 <https://bio.tools/mirbase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0102,
@@ -303885,7 +315378,7 @@ Mirage is ancestral genome estimation software with high accuracy based on a phy
     biotools:primaryContact "Sam Griffiths-Jones" .
 
 <https://bio.tools/mirbaseconverter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_3518 ;
@@ -303902,8 +315395,35 @@ Mirage is ancestral genome estimation software with high accuracy based on a phy
     sc:url "http://bioconductor.org/packages/release/bioc/html/miRBaseConverter.html" ;
     biotools:primaryContact "Taosheng Xu" .
 
+<https://bio.tools/mirbiom> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:name "Expression data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0659,
+        edam:topic_3170,
+        edam:topic_3474,
+        edam:topic_3518,
+        edam:topic_3794 ;
+    sc:citation <https://doi.org/10.1371/JOURNAL.PONE.0258550>,
+        "pmcid:PMC8509996",
+        "pubmed:34637468" ;
+    sc:description "Machine-learning on Bayesian causal nets of RBP-miRNA interactions successfully predicts miRNA profiles." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_0463,
+        edam:operation_3792,
+        edam:operation_3799,
+        edam:operation_3901 ;
+    sc:isAccessibleForFree true ;
+    sc:name "miRbiom" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://scbb.ihbt.res.in/miRbiom-webserver/" .
+
 <https://bio.tools/mircat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0769 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/bts311> ;
@@ -303918,7 +315438,7 @@ Mirage is ancestral genome estimation software with high accuracy based on a phy
     biotools:primaryContact "Forum" .
 
 <https://bio.tools/mircat2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_0780,
@@ -303937,7 +315457,7 @@ Mirage is ancestral genome estimation software with high accuracy based on a phy
         "V. Moulton" .
 
 <https://bio.tools/mircomb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0602,
@@ -303960,14 +315480,14 @@ Mirage is ancestral genome estimation software with high accuracy based on a phy
 
 <https://bio.tools/mircomp> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3111" ;
-            sc:name "Processed microarray data" ;
-            sc:sameAs "http://edamontology.org/data_3111" ] ;
+            sc:additionalType "http://edamontology.org/data_3111" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "Processed microarray data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0659,
@@ -303990,7 +315510,7 @@ Mirage is ancestral genome estimation software with high accuracy based on a phy
     biotools:primaryContact "Matthew N. McCall" .
 
 <https://bio.tools/mircomp-shiny> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_3519 ;
@@ -304009,7 +315529,7 @@ Mirage is ancestral genome estimation software with high accuracy based on a phy
     biotools:primaryContact "Matthew N. McCall" .
 
 <https://bio.tools/mircompare> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0659 ;
@@ -304026,7 +315546,7 @@ Mirage is ancestral genome estimation software with high accuracy based on a phy
         "Stefano Pirro" .
 
 <https://bio.tools/mirconnx> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -304044,7 +315564,7 @@ Mirage is ancestral genome estimation software with high accuracy based on a phy
     sc:url "http://www.benoslab.pitt.edu/mirconnx" .
 
 <https://bio.tools/mircoop> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0659,
@@ -304060,7 +315580,7 @@ Although miRNAs can cause widespread changes in expression programs, single miRN
     sc:url "https://github.com/guldenolgun" .
 
 <https://bio.tools/mircorrnet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0659,
@@ -304080,7 +315600,7 @@ Although miRNAs can cause widespread changes in expression programs, single miRN
     biotools:primaryContact <https://orcid.org/0000-0001-8780-6303> .
 
 <https://bio.tools/mircure> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0659,
@@ -304100,22 +315620,8 @@ Given a list of miRNA candidates, MirCure evaluates a number of miRNA-specific f
     sc:name "MirCure" ;
     sc:url "https://github.com/ConesaLab/MirCure" .
 
-<https://bio.tools/mirdata> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0659,
-        edam:topic_0780,
-        edam:topic_3500 ;
-    sc:citation <https://doi.org/10.1016/J.DIB.2019.104209>,
-        "pmcid:PMC6700487",
-        "pubmed:31453279" ;
-    sc:description "> LOW CONFIDENCE! | Genome-wide hairpins datasets of animals and plants for novel miRNA prediction | sinc(i) - http://sinc.unl.edu.ar/ lbugnon@sinc.unl.edu.ar | This is a public distribution of the dataset detailed in: \"Genome-wide hairpins datasets of animals and plants for novel miRNA prediction”, by Leandro A. Bugnon, Cristian Yones, Diego H. Milone and Georgina Stegmayer, under review (2019) | We make available to the research community the hairpin sequences and extracted features of genome-wide data, that can be very useful for the task of computational microRNAs prediction:" ;
-    sc:featureList edam:operation_0463,
-        edam:operation_3192,
-        edam:operation_3792 ;
-    sc:name "mirdata" ;
-    sc:url "https://sourceforge.net/projects/sourcesinc/files/mirdata/" .
-
 <https://bio.tools/mirdeep> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0659,
@@ -304130,7 +315636,7 @@ Given a list of miRNA candidates, MirCure evaluates a number of miRNA-specific f
     biotools:primaryContact "Nikolaus Rajewsky" .
 
 <https://bio.tools/mirdeep2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_3794 ;
@@ -304149,7 +315655,7 @@ Given a list of miRNA candidates, MirCure evaluates a number of miRNA-specific f
     sc:url "https://github.com/rajewsky-lab/mirdeep2" .
 
 <https://bio.tools/mirdentify> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_3500,
@@ -304168,7 +315674,7 @@ Given a list of miRNA candidates, MirCure evaluates a number of miRNA-specific f
     biotools:primaryContact "Support" .
 
 <https://bio.tools/mirdnn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_0780,
@@ -304185,8 +315691,34 @@ Given a list of miRNA candidates, MirCure evaluates a number of miRNA-specific f
     sc:url "http://sinc.unl.edu.ar/web-demo/mirdnn/" ;
     biotools:primaryContact "G. Stegmayer" .
 
+<https://bio.tools/mire2e> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_3495" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "RNA sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0082,
+        edam:topic_0654,
+        edam:topic_0659,
+        edam:topic_3170,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAB823>,
+        "pubmed:34875006" ;
+    sc:description "A full end-to-end deep model based on Transformers for prediction of pre-miRNAs." ;
+    sc:featureList edam:operation_0278,
+        edam:operation_0463,
+        edam:operation_3192 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "miRe2e" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://sinc.unl.edu.ar/web-demo/miRe2e/" .
+
 <https://bio.tools/miredibase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0203,
@@ -304206,18 +315738,16 @@ MiREDiBase (miRNA Editing Database) is a catalog of validated and putative miRNA
 
 <https://bio.tools/mireduce> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2975" ;
-            sc:name "Nucleic acid sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_2975" ],
+            sc:additionalType "http://edamontology.org/data_2975" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Nucleic acid sequence (raw)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0928" ;
-            sc:name "Gene expression profile" ;
-            sc:sameAs "http://edamontology.org/data_0928" ] ;
+            sc:additionalType "http://edamontology.org/data_0928" ;
+            sc:name "Gene expression profile" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0659 ;
     sc:description "This tool correlates the logarithm of expression fold changes of a set of genes with the motif content of the regulatory sequences of these genes. In particular, it correlates the genome wide mRNA log fold changes in experiments involving the knockout/knockdown/overexpression of one or more miRNAs with the motif content of the 3'UTRs. The model is based on linear regression, and is intended for genome-wide studies." ;
@@ -304226,8 +315756,32 @@ MiREDiBase (miRNA Editing Database) is a catalog of validated and putative miRNA
     sc:operatingSystem "Linux" ;
     sc:url "https://www.mdc-berlin.de/10615841/en/research/research_teams/systems_biology_of_gene_regulatory_elements/projects/mireduce" .
 
+<https://bio.tools/miretrieve> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0218,
+        edam:topic_0634,
+        edam:topic_0659,
+        edam:topic_3063,
+        edam:topic_3518 ;
+    sc:citation <https://doi.org/10.1093/NARGAB/LQAB117>,
+        "pmcid:PMC8696973",
+        "pubmed:34988440" ;
+    sc:description "R package and web application for miRNA text mining." ;
+    sc:featureList edam:operation_0306,
+        edam:operation_0463,
+        edam:operation_3792 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "miRetrieve" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://miretrieve.shinyapps.io/miRetrieve/" .
+
 <https://bio.tools/mirev> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_0659,
@@ -304243,7 +315797,7 @@ MiREDiBase (miRNA Editing Database) is a catalog of validated and putative miRNA
     biotools:primaryContact "Alex Hildebrandt" .
 
 <https://bio.tools/mireya> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_0749,
@@ -304261,7 +315815,7 @@ MiREDiBase (miRNA Editing Database) is a catalog of validated and putative miRNA
         "Yulia A. Medvedeva" .
 
 <https://bio.tools/mirffldb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0634,
@@ -304283,14 +315837,14 @@ miRNA and Transcription Factors (TFs) are fundamental transcriptional and post-t
 
 <https://bio.tools/mirfix> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1916" ;
-            sc:name "Alignment" ;
-            sc:sameAs "http://edamontology.org/data_1916" ] ;
+            sc:additionalType "http://edamontology.org/data_1916" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Alignment" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1916" ;
-            sc:name "Alignment" ;
-            sc:sameAs "http://edamontology.org/data_1916" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1916" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "MIRfix automatically curates miRNA datasets by improving alignments of their precursors, the consistency of the annotation of mature miR and miR* sequence, and the phylogenetic coverage. MIRfix produces alignments that are comparable across families and sets the stage for improved homology search as well as quantitative analyses." ;
     sc:featureList edam:operation_2428 ;
     sc:name "MIRfix" ;
@@ -304298,7 +315852,7 @@ miRNA and Transcription Factors (TFs) are fundamental transcriptional and post-t
     sc:url "https://github.com/Bierinformatik/MIRfix" .
 
 <https://bio.tools/mirfold> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0659,
@@ -304311,8 +315865,31 @@ miRNA and Transcription Factors (TFs) are fundamental transcriptional and post-t
     sc:softwareHelp <http://wwwabi.snv.jussieu.fr/research/publi/small_ncRNA/> ;
     sc:url "http://wwwabi.snv.jussieu.fr/research/publi/small_ncRNA/" .
 
+<https://bio.tools/mirgalaxy> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0659,
+        edam:topic_0769,
+        edam:topic_3168,
+        edam:topic_3360 ;
+    sc:citation <https://doi.org/10.3390/CANCERS13225663>,
+        "pmcid:PMC8616193",
+        "pubmed:34830818" ;
+    sc:description "Galaxy-Based Framework for Interactive Analysis of microRNA and isomiR Sequencing Data." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3223,
+        edam:operation_3792 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "miRGalaxy" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/Glogobyte/miRGalaxy" .
+
 <https://bio.tools/mirge3> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_0769,
@@ -304333,30 +315910,27 @@ Enables building small-RNA libraries for the organism of choice to use in the mi
 
 <https://bio.tools/mirgen> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1097" ;
-            sc:name "Sequence accession (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1097" ],
+            sc:additionalType "http://edamontology.org/data_1097" ;
+            sc:name "Sequence accession (nucleic acid)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1097" ;
-            sc:name "Sequence accession (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1097" ],
+            sc:additionalType "http://edamontology.org/data_1869" ;
+            sc:name "Organism identifier" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1869" ;
-            sc:name "Organism identifier" ;
-            sc:sameAs "http://edamontology.org/data_1869" ] ;
+            sc:additionalType "http://edamontology.org/data_1097" ;
+            sc:name "Sequence accession (nucleic acid)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0880" ;
-            sc:name "RNA secondary structure" ;
-            sc:sameAs "http://edamontology.org/data_0880" ],
+            sc:additionalType "http://edamontology.org/data_3134" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Gene transcript report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3495" ;
-            sc:name "RNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3495" ],
+            sc:additionalType "http://edamontology.org/data_0880" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "RNA secondary structure" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3134" ;
-            sc:name "Gene transcript report" ;
-            sc:sameAs "http://edamontology.org/data_3134" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3495" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "RNA sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0659 ;
     sc:citation <https://doi.org/10.1146/annurev-genet-120213-092023> ;
@@ -304374,7 +315948,7 @@ Enables building small-RNA libraries for the organism of choice to use in the mi
     biotools:primaryContact "Bastian Fromm" .
 
 <https://bio.tools/mirgo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0659,
@@ -304394,7 +315968,7 @@ microRNA-target binding site prediction tool.""" ;
     sc:url "http://predictor.nchu.edu.tw/miRgo" .
 
 <https://bio.tools/mirgtf-net> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0659,
@@ -304416,7 +315990,7 @@ microRNA-target binding site prediction tool.""" ;
     biotools:primaryContact <https://orcid.org/0000-0002-8830-4679> .
 
 <https://bio.tools/miriam> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1093/nar/gkr1097> ;
@@ -304430,8 +316004,31 @@ microRNA-target binding site prediction tool.""" ;
     sc:softwareVersion "1" ;
     sc:url "http://www.ebi.ac.uk/miriam/" .
 
+<https://bio.tools/miriam_pipeline> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0769,
+        edam:topic_2229,
+        edam:topic_3382,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1002/CYTO.A.24541>,
+        "pubmed:35084791" ;
+    sc:description "A machine and deep learning single-cell segmentation and quantification pipeline for multi-dimensional tissue images." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_3443,
+        edam:operation_3799 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "MIRIAM" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://github.com/Coffey-Lab/MIRIAM/blob/master/Cell%20Segmentation%20Tutorial.pdf> ;
+    sc:url "https://github.com/Coffey-Lab/MIRIAM" .
+
 <https://bio.tools/miriam_ws> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_2259,
         edam:topic_3071 ;
@@ -304447,7 +316044,7 @@ microRNA-target binding site prediction tool.""" ;
     sc:url "http://www.ebi.ac.uk/miriam/main/mdb?section=ws_help" .
 
 <https://bio.tools/mirin> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0602,
@@ -304464,7 +316061,7 @@ microRNA-target binding site prediction tool.""" ;
     sc:url "http://mirin.ym.edu.tw/tool.php" .
 
 <https://bio.tools/miringo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Library" ;
     sc:applicationSubCategory edam:topic_0089,
@@ -304487,7 +316084,7 @@ This R Shiny application can be used to predict Gene Ontology (GO) terms indirec
     sc:url "https://github.com/Fadeel/miRinGO" .
 
 <https://bio.tools/mirintegrator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0099,
@@ -304506,8 +316103,29 @@ This R Shiny application can be used to predict Gene Ontology (GO) terms indirec
     sc:url "http://bioconductor.org/packages/release/bioc/html/mirIntegrator.html" ;
     biotools:primaryContact "Diana Diaz" .
 
+<https://bio.tools/mirkat-mc> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0634,
+        edam:topic_3379,
+        edam:topic_3697 ;
+    sc:citation <https://doi.org/10.3389/FGENE.2022.841764>,
+        "pmcid:PMC9010828",
+        "pubmed:35432465" ;
+    sc:description "A Distance-Based Microbiome Kernel Association Test With Multi-Categorical Outcomes.MiRKAT-MC" ;
+    sc:featureList edam:operation_2238,
+        edam:operation_3196,
+        edam:operation_3432 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "MiRKAT-MC" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/Zhiwen-Owen-Jiang/MiRKATMC" .
+
 <https://bio.tools/mirkit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "miRkit is an open source framework written in R, that allows for the comprehensive analysis of RT-PCR data, from the processing of raw data to a functional analysis of the produced results. The main goal of the tool is to provide an assessment of the samples’ quality, perform data normalization by endogenous and exogenous miRNAs, and facilitate differential and functional enrichment analysis. The tool offers fast execution times with low memory usage, can perform the full analysis from the raw RT-PCR data to functional analysis of targeted genes, and is specifically designed to support the popular miScript miRNA PCR Array (Qiagen) technology." ;
     sc:isAccessibleForFree true ;
     sc:license "MIT" ;
@@ -304519,18 +316137,17 @@ This R Shiny application can be used to predict Gene Ontology (GO) terms indirec
 
 <https://bio.tools/mirlab> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3108" ;
-            sc:name "Experimental measurement" ;
-            sc:sameAs "http://edamontology.org/data_3108" ],
+            sc:additionalType "http://edamontology.org/data_3108" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Experimental measurement" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Gene expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ] ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Gene expression data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2082" ;
-            sc:name "Matrix" ;
-            sc:sameAs "http://edamontology.org/data_2082" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2082" ;
+            sc:name "Matrix" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library",
         "Plug-in" ;
@@ -304560,7 +316177,7 @@ This R Shiny application can be used to predict Gene Ontology (GO) terms indirec
     biotools:primaryContact <http://orcid.org/0000-0002-9732-4313> .
 
 <https://bio.tools/mirlastic> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -304577,7 +316194,7 @@ This R Shiny application can be used to predict Gene Ontology (GO) terms indirec
     biotools:primaryContact "Steffen Sass" .
 
 <https://bio.tools/mirmaid> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Database portal",
         "Library",
@@ -304602,7 +316219,7 @@ This R Shiny application can be used to predict Gene Ontology (GO) terms indirec
         "Morten Lindow" .
 
 <https://bio.tools/mirmap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0659 ;
     sc:citation <https://doi.org/10.1093/nar/gks901> ;
@@ -304617,7 +316234,7 @@ This R Shiny application can be used to predict Gene Ontology (GO) terms indirec
     sc:url "http://mirmap.ezlab.org/" .
 
 <https://bio.tools/mirmark> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_0749,
@@ -304632,7 +316249,7 @@ This R Shiny application can be used to predict Gene Ontology (GO) terms indirec
     biotools:primaryContact "Lana Garmire" .
 
 <https://bio.tools/mirmaster> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0659,
@@ -304650,7 +316267,7 @@ This R Shiny application can be used to predict Gene Ontology (GO) terms indirec
     biotools:primaryContact <https://orcid.org/0000-0002-5361-0895> .
 
 <https://bio.tools/mirmat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0659 ;
@@ -304667,7 +316284,7 @@ This R Shiny application can be used to predict Gene Ontology (GO) terms indirec
         "Prof. J.Wang (Other)" .
 
 <https://bio.tools/mirmine> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:description "miRmine database is a collection of expression profiles from different publicly available miRNA-seq datasets, Panwar et al (2017) miRmine: A Database of Human miRNA Expression, prepared with this data package as RangedSummarizedExperiment." ;
@@ -304684,7 +316301,7 @@ This R Shiny application can be used to predict Gene Ontology (GO) terms indirec
     biotools:primaryContact "Dusan Randjelovic" .
 
 <https://bio.tools/mirmmr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2533,
         edam:topic_2640,
@@ -304701,7 +316318,7 @@ This R Shiny application can be used to predict Gene Ontology (GO) terms indirec
         "Steven M Foltz" .
 
 <https://bio.tools/mirmod> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0099,
@@ -304721,7 +316338,7 @@ This R Shiny application can be used to predict Gene Ontology (GO) terms indirec
     biotools:primaryContact "Dinesh Gupta" .
 
 <https://bio.tools/mirmodule> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0659,
@@ -304735,8 +316352,31 @@ This R Shiny application can be used to predict Gene Ontology (GO) terms indirec
     sc:softwareHelp <http://hulab.ucf.edu/research/projects/miRNA/miRModule/> ;
     sc:url "http://hulab.ucf.edu/research/projects/miRNA/miRModule/" .
 
+<https://bio.tools/mirmodulenet> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workflow" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0602,
+        edam:topic_0659,
+        edam:topic_0769,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.3389/FGENE.2022.767455>,
+        "pmcid:PMC9039401",
+        "pubmed:35495139" ;
+    sc:description "Detecting miRNA-mRNA Regulatory Modules." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_2436,
+        edam:operation_3792 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "miRModuleNet" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/malikyousef/miRModuleNet/" .
+
 <https://bio.tools/mirna-dis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0659,
@@ -304755,7 +316395,7 @@ based on distance structure status pairs.""" ;
     biotools:primaryContact "Bin Liu" .
 
 <https://bio.tools/mirna_digger> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0203,
@@ -304771,10 +316411,10 @@ based on distance structure status pairs.""" ;
 
 <https://bio.tools/mirnafinder> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0659,
@@ -304796,7 +316436,7 @@ based on distance structure status pairs.""" ;
     sc:url "http://mirnafinder.shyaman.me/" .
 
 <https://bio.tools/mirnafold> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0099,
@@ -304813,7 +316453,7 @@ based on distance structure status pairs.""" ;
     sc:url "http://evryrna.ibisc.univ-evry.fr/miRNAFold/" .
 
 <https://bio.tools/mirnakey> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0659 ;
     sc:citation "pubmed:20801911" ;
@@ -304827,7 +316467,7 @@ based on distance structure status pairs.""" ;
     biotools:primaryContact "miRNAKey Support" .
 
 <https://bio.tools/mirnalasso> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0160,
@@ -304844,7 +316484,7 @@ based on distance structure status pairs.""" ;
     biotools:primaryContact "Yin Liu" .
 
 <https://bio.tools/mirnameconverter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0099,
@@ -304867,26 +316507,26 @@ based on distance structure status pairs.""" ;
 
 <https://bio.tools/mirnapath> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3112" ;
-            sc:name "Gene expression matrix" ;
-            sc:sameAs "http://edamontology.org/data_3112" ],
+            sc:additionalType "http://edamontology.org/data_3115" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Microarray metadata" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3115" ;
-            sc:name "Microarray metadata" ;
-            sc:sameAs "http://edamontology.org/data_3115" ] ;
+            sc:additionalType "http://edamontology.org/data_3112" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Gene expression matrix" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1636" ;
-            sc:name "Heat map" ;
-            sc:sameAs "http://edamontology.org/data_1636" ],
+            sc:additionalType "http://edamontology.org/data_1772" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "Score" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1669" ;
-            sc:name "P-value" ;
-            sc:sameAs "http://edamontology.org/data_1669" ],
+            sc:additionalType "http://edamontology.org/data_1669" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "P-value" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1772" ;
-            sc:name "Score" ;
-            sc:sameAs "http://edamontology.org/data_1772" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1636" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "Heat map" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -304907,7 +316547,7 @@ based on distance structure status pairs.""" ;
     biotools:primaryContact "James M. Ward" .
 
 <https://bio.tools/mirnaqc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_2229,
@@ -304929,7 +316569,7 @@ mirnaQC provides several quality features that can help researchers identify iss
     sc:url "https://arn.ugr.es/mirnaqc/" .
 
 <https://bio.tools/mirnasnp-v3> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -304951,7 +316591,7 @@ microRNAs (miRNAs) are endogenous and regulatory non-coding RNAs by targeting mR
     sc:url "http://bioinfo.life.hust.edu.cn/miRNASNP/" .
 
 <https://bio.tools/mirnass> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0659,
@@ -304970,22 +316610,22 @@ microRNAs (miRNAs) are endogenous and regulatory non-coding RNAs by targeting mR
 
 <https://bio.tools/mirnatap> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1383" ;
-            sc:name "Sequence alignment (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1383" ] ;
+            sc:additionalType "http://edamontology.org/data_1383" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Sequence alignment (nucleic acid)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1027" ;
-            sc:name "Gene ID (NCBI)" ;
-            sc:sameAs "http://edamontology.org/data_1027" ],
+            sc:additionalType "http://edamontology.org/data_1027" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "Gene ID (NCBI)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1772" ;
-            sc:name "Score" ;
-            sc:sameAs "http://edamontology.org/data_1772" ],
+            sc:additionalType "http://edamontology.org/data_1772" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "Score" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0954" ;
-            sc:name "Database cross-mapping" ;
-            sc:sameAs "http://edamontology.org/data_0954" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0954" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "Database cross-mapping" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0621,
@@ -305008,7 +316648,7 @@ microRNAs (miRNAs) are endogenous and regulatory non-coding RNAs by targeting mR
     biotools:primaryContact "Maciej Pajak" .
 
 <https://bio.tools/mirnatarbase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0218,
         edam:topic_0659,
@@ -305029,7 +316669,7 @@ As a database, miRTarBase has accumulated more than three hundred and sixty thou
     sc:url "http://miRTarBase.cuhk.edu.cn/" .
 
 <https://bio.tools/mirnatip> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0602,
@@ -305045,7 +316685,7 @@ As a database, miRTarBase has accumulated more than three hundred and sixty thou
     biotools:primaryContact "Antonino Fiannaca" .
 
 <https://bio.tools/mirnatissueatlas2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0634,
@@ -305066,7 +316706,7 @@ As a database, miRTarBase has accumulated more than three hundred and sixty thou
     sc:url "https://www.ccb.uni-saarland.de/tissueatlas2" .
 
 <https://bio.tools/mirnest> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_0780,
@@ -305088,7 +316728,7 @@ As a database, miRTarBase has accumulated more than three hundred and sixty thou
     biotools:primaryContact "miRNEST Support" .
 
 <https://bio.tools/mirnet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0602,
@@ -305109,7 +316749,7 @@ As a database, miRTarBase has accumulated more than three hundred and sixty thou
     biotools:primaryContact "Jeff Xia" .
 
 <https://bio.tools/mirortho> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0084,
@@ -305128,7 +316768,7 @@ As a database, miRTarBase has accumulated more than three hundred and sixty thou
     sc:url "http://cegg.unige.ch/mirortho" .
 
 <https://bio.tools/mirpipe> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0659 ;
@@ -305143,7 +316783,7 @@ As a database, miRTarBase has accumulated more than three hundred and sixty thou
     sc:url "https://bioinformatics.mpi-bn.mpg.de/" .
 
 <https://bio.tools/mirplant> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0659,
@@ -305164,7 +316804,7 @@ As a database, miRTarBase has accumulated more than three hundred and sixty thou
     biotools:primaryContact "Support" .
 
 <https://bio.tools/mirplex> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0659,
@@ -305182,7 +316822,7 @@ As a database, miRTarBase has accumulated more than three hundred and sixty thou
         "Dr. Simon Moxon," .
 
 <https://bio.tools/mirpls> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_2640,
@@ -305201,7 +316841,7 @@ Run cv_mirPLS to determine the regularization parameters: lambda1 and lambda2. W
     sc:url "https://github.com/pfruan/mirPLS" .
 
 <https://bio.tools/mirprof> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_3168,
@@ -305221,7 +316861,7 @@ Run cv_mirPLS to determine the regularization parameters: lambda1 and lambda2. W
     biotools:primaryContact "Vincent Moulton" .
 
 <https://bio.tools/mirpub> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0092 ;
@@ -305239,14 +316879,14 @@ Run cv_mirPLS to determine the regularization parameters: lambda1 and lambda2. W
 
 <https://bio.tools/mirpursuit> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3496" ;
-            sc:name "RNA sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_3496" ] ;
+            sc:additionalType "http://edamontology.org/data_3496" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "RNA sequence (raw)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0659 ;
     sc:citation <https://doi.org/10.1002/1873-3468.12746>,
@@ -305267,7 +316907,7 @@ Run cv_mirPLS to determine the regularization parameters: lambda1 and lambda2. W
     biotools:primaryContact <http://orcid.org/0000-0002-3794-4262> .
 
 <https://bio.tools/mirra> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_3077,
@@ -305287,8 +316927,34 @@ Run cv_mirPLS to determine the regularization parameters: lambda1 and lambda2. W
     sc:softwareHelp <https://github.com/opieters/MIRRA/tree/main/webserver/documentation> ;
     sc:url "https://github.com/opieters/MIRRA" .
 
+<https://bio.tools/mirror> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_0114,
+        edam:topic_0219,
+        edam:topic_3174,
+        edam:topic_3697 ;
+    sc:citation <https://doi.org/10.1128/SPECTRUM.02017-21>,
+        "pmcid:PMC9045266",
+        "pubmed:35352997" ;
+    sc:description "Database and Tool for Metataxonomics with Long-Read Sequence." ;
+    sc:featureList edam:operation_0579,
+        edam:operation_3200,
+        edam:operation_3460,
+        edam:operation_3695,
+        edam:operation_3933 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "MIrROR" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://mirror.egnome.co.kr/" .
+
 <https://bio.tools/mirscan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0099,
@@ -305304,7 +316970,7 @@ Run cv_mirPLS to determine the regularization parameters: lambda1 and lambda2. W
     sc:url "http://bartellab.wi.mit.edu/softwareDocs/MiRscan3/Introduction.html" .
 
 <https://bio.tools/mirscape> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0659,
@@ -305326,7 +316992,7 @@ Run cv_mirPLS to determine the regularization parameters: lambda1 and lambda2. W
     sc:url "https://github.com/hannenhalli-lab/miRSCAPE" .
 
 <https://bio.tools/mirsm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0659,
@@ -305350,7 +317016,7 @@ Run cv_mirPLS to determine the regularization parameters: lambda1 and lambda2. W
     biotools:primaryContact <https://orcid.org/0000-0001-6127-9701> .
 
 <https://bio.tools/mirsponge> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3063,
@@ -305370,7 +317036,7 @@ Run cv_mirPLS to determine the regularization parameters: lambda1 and lambda2. W
     biotools:primaryContact "Junpeng Zhang" .
 
 <https://bio.tools/mirspring> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_3071,
@@ -305385,7 +317051,7 @@ Run cv_mirPLS to determine the regularization parameters: lambda1 and lambda2. W
     biotools:primaryContact "David T. Humphreys" .
 
 <https://bio.tools/mirswitch> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_0659,
@@ -305403,7 +317069,7 @@ This website uses Matomo Analytics and cookies. For more information, please ref
     sc:url "https://www.ccb.uni-saarland.de/mirswitch/" .
 
 <https://bio.tools/mirsynergy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0099,
@@ -305424,7 +317090,7 @@ This website uses Matomo Analytics and cookies. For more information, please ref
     biotools:primaryContact "Yue Li" .
 
 <https://bio.tools/mirsystem> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0602,
@@ -305443,7 +317109,7 @@ This website uses Matomo Analytics and cookies. For more information, please ref
     biotools:primaryContact "Support" .
 
 <https://bio.tools/mirtar2go> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_2229,
@@ -305465,7 +317131,7 @@ This website uses Matomo Analytics and cookies. For more information, please ref
         "Support" .
 
 <https://bio.tools/mirtarbase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -305486,8 +317152,31 @@ This website uses Matomo Analytics and cookies. For more information, please ref
     sc:url "http://miRTarBase.mbc.nctu.edu.tw/" ;
     biotools:primaryContact "miRTarBase Support" .
 
+<https://bio.tools/mirtarbase_mirnas> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0218,
+        edam:topic_0659,
+        edam:topic_2885,
+        edam:topic_3512,
+        edam:topic_3794 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAB1079>,
+        "pmcid:PMC8728135",
+        "pubmed:34850920" ;
+    sc:description "The experimentally validated microRNA-target interactions database" ;
+    sc:featureList edam:operation_0314,
+        edam:operation_0337,
+        edam:operation_0463,
+        edam:operation_3792 ;
+    sc:isAccessibleForFree true ;
+    sc:name "miRTarBase" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://miRTarBase.cuhk.edu.cn/" .
+
 <https://bio.tools/mirtarvis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0203,
@@ -305505,7 +317194,7 @@ This website uses Matomo Analytics and cookies. For more information, please ref
     sc:url "http://hcil.snu.ac.kr/~rati/miRTarVis/index.html" .
 
 <https://bio.tools/mirtex> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0204,
@@ -305522,7 +317211,7 @@ This website uses Matomo Analytics and cookies. For more information, please ref
     biotools:primaryContact "Gang Li" .
 
 <https://bio.tools/mirtif> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0659,
@@ -305539,7 +317228,7 @@ This website uses Matomo Analytics and cookies. For more information, please ref
     biotools:primaryContact "Kuo-Bin Li" .
 
 <https://bio.tools/mirtmc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0659,
@@ -305558,7 +317247,7 @@ This project includes the dataset and excuteable programs (both on Windows and L
     sc:url "https://github.com/hjiangcsu/miRTMC" .
 
 <https://bio.tools/mirtools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0659,
@@ -305575,7 +317264,7 @@ This project includes the dataset and excuteable programs (both on Windows and L
     sc:url "http://centre.bioinformatics.zj.cn/mirtools/" .
 
 <https://bio.tools/mirtrail> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0602,
@@ -305593,7 +317282,7 @@ This project includes the dataset and excuteable programs (both on Windows and L
     sc:url "http://mirtrail.bioinf.uni-sb.de/" .
 
 <https://bio.tools/mirtrios> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0199,
@@ -305616,7 +317305,7 @@ This project includes the dataset and excuteable programs (both on Windows and L
         "Yi Jiang" .
 
 <https://bio.tools/miru> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0659,
@@ -305635,7 +317324,7 @@ This project includes the dataset and excuteable programs (both on Windows and L
     biotools:primaryContact "The Zhao Bioinformatics Laboratory" .
 
 <https://bio.tools/miru-profiler> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0634,
@@ -305656,7 +317345,7 @@ This project includes the dataset and excuteable programs (both on Windows and L
         "Rahim Rajwani" .
 
 <https://bio.tools/miru-vntrplus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0199,
@@ -305678,7 +317367,7 @@ This project includes the dataset and excuteable programs (both on Windows and L
     biotools:primaryContact "Contact form" .
 
 <https://bio.tools/mirumir> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0659,
@@ -305696,7 +317385,7 @@ This project includes the dataset and excuteable programs (both on Windows and L
     biotools:primaryContact "AV Antonov" .
 
 <https://bio.tools/mirvas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0203,
         edam:topic_0659,
@@ -305723,7 +317412,7 @@ Cammaerts, S., Strazisar, M., Dierckx, J., Del Favero, J., De Rijk, P. (2015) mi
     sc:url "http://mirvas.bioinf.be/analyse.html" .
 
 <https://bio.tools/mirvestigator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0203,
@@ -305746,7 +317435,7 @@ Cammaerts, S., Strazisar, M., Dierckx, J., Del Favero, J., De Rijk, P. (2015) mi
     biotools:primaryContact "miRvestigator Support" .
 
 <https://bio.tools/mirvial> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0659,
@@ -305763,7 +317452,7 @@ Cammaerts, S., Strazisar, M., Dierckx, J., Del Favero, J., De Rijk, P. (2015) mi
     biotools:primaryContact "Weixiong Zhang" .
 
 <https://bio.tools/mirviz> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0625,
@@ -305785,7 +317474,7 @@ Overlay microRNA data (miR expression, differential expression, phenotypic score
     sc:url "http://mirviz.prabi.fr/" .
 
 <https://bio.tools/mirz> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0621,
@@ -305798,7 +317487,7 @@ Overlay microRNA data (miR expression, differential expression, phenotypic score
     sc:url "http://www.mirz.unibas.ch" .
 
 <https://bio.tools/misa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0632,
         edam:topic_0654,
@@ -305815,7 +317504,7 @@ Overlay microRNA data (miR expression, differential expression, phenotypic score
     biotools:primaryContact "Thomas Thiel" .
 
 <https://bio.tools/miscan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3305 ;
@@ -305828,7 +317517,7 @@ Overlay microRNA data (miR expression, differential expression, phenotypic score
     sc:url "https://miscan.eu-topia.org" .
 
 <https://bio.tools/miscast> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
@@ -305849,7 +317538,7 @@ MISCAST (MIssense variant to protein StruCture Analysis web SuiTe; http://miscas
     sc:url "http://miscast.broadinstitute.org/" .
 
 <https://bio.tools/miscnn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3384,
@@ -305869,7 +317558,7 @@ The open-source Python library MIScnn is an intuitive API allowing fast setup of
     sc:url "https://github.com/frankkramer-lab/MIScnn" .
 
 <https://bio.tools/misdeed> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3339,
         edam:topic_3678,
@@ -305887,8 +317576,29 @@ The open-source Python library MIScnn is an intuitive API allowing fast setup of
         "Windows" ;
     sc:url "https://github.com/pchlenski/misdeed" .
 
+<https://bio.tools/miseval> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_3063,
+        edam:topic_3303,
+        edam:topic_3384,
+        edam:topic_3452,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.3233/SHTI220391>,
+        "pubmed:35612011" ;
+    sc:description "A Metric Library for Medical Image Segmentation Evaluation." ;
+    sc:featureList edam:operation_3435,
+        edam:operation_3443 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "MISeval" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/frankkramer-lab/miseval" .
+
 <https://bio.tools/misfinder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0196,
@@ -305903,7 +317613,7 @@ The open-source Python library MIScnn is an intuitive API allowing fast setup of
     sc:url "https://github.com/hitbio/misFinder" .
 
 <https://bio.tools/mishima> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654 ;
     sc:citation <https://doi.org/10.1186/1471-2105-11-142> ;
@@ -305917,7 +317627,7 @@ The open-source Python library MIScnn is an intuitive API allowing fast setup of
     sc:url "http://kirill-kryukov.com/study/mishima/" .
 
 <https://bio.tools/misis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0781,
@@ -305933,7 +317643,7 @@ The open-source Python library MIScnn is an intuitive API allowing fast setup of
     sc:url "https://www.fasteris.com/apps/" .
 
 <https://bio.tools/mismax> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3293 ;
     sc:citation <https://doi.org/10.1109/DCC.2014.57> ;
@@ -305946,7 +317656,7 @@ The open-source Python library MIScnn is an intuitive API allowing fast setup of
     biotools:primaryContact "Cinzia Pizzi" .
 
 <https://bio.tools/miso> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3320 ;
@@ -305960,8 +317670,31 @@ The open-source Python library MIScnn is an intuitive API allowing fast setup of
     sc:url "http://genes.mit.edu/burgelab/miso/docs/#releases" ;
     biotools:primaryContact "Tom Griffiths" .
 
+<https://bio.tools/mispheroid> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_2229,
+        edam:topic_2640,
+        edam:topic_3170,
+        edam:topic_3421 ;
+    sc:citation <https://doi.org/10.1038/S41592-021-01291-4>,
+        "pmcid:PMC8566242",
+        "pubmed:34725485" ;
+    sc:description "A knowledgebase and transparency tool for minimum information in spheroid identity." ;
+    sc:featureList edam:operation_0310,
+        edam:operation_3223,
+        edam:operation_3799 ;
+    sc:isAccessibleForFree true ;
+    sc:name "MISpheroID" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://www.mispheroid.org" .
+
 <https://bio.tools/missense3d-db> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0154,
@@ -305986,7 +317719,7 @@ Missense3D-DB is a database of precomputed structural predictions for ~4M human
     sc:url "http://missense3d.bc.ic.ac.uk/" .
 
 <https://bio.tools/missequel> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0622,
@@ -306002,7 +317735,7 @@ Missense3D-DB is a database of precomputed structural predictions for ~4M human
     sc:url "http://www.cs.colostate.edu/seq/missequel/" .
 
 <https://bio.tools/missing_label_problem> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_3332 ;
@@ -306014,7 +317747,7 @@ Missense3D-DB is a database of precomputed structural predictions for ~4M human
     sc:url "https://github.com/ljmartin/Missing_label_problem" .
 
 <https://bio.tools/missmethyl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3168,
@@ -306037,7 +317770,7 @@ Missense3D-DB is a database of precomputed structural predictions for ~4M human
         <http://orcid.org/0000-0002-9458-3061> .
 
 <https://bio.tools/missrows> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3307 ;
@@ -306059,7 +317792,7 @@ Missense3D-DB is a database of precomputed structural predictions for ~4M human
     biotools:primaryContact <http://orcid.org/0000-0003-3432-6909> .
 
 <https://bio.tools/mist> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
@@ -306081,7 +317814,7 @@ Missense3D-DB is a database of precomputed structural predictions for ~4M human
     sc:url "http://mistdb.com/" .
 
 <https://bio.tools/mist-stitch> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3360,
         edam:topic_3382,
@@ -306097,7 +317830,7 @@ Missense3D-DB is a database of precomputed structural predictions for ~4M human
     biotools:primaryContact "Joe Chalfoun" .
 
 <https://bio.tools/mistic> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0128,
@@ -306120,7 +317853,7 @@ Missense3D-DB is a database of precomputed structural predictions for ~4M human
     biotools:primaryContact "Franco Simonetti (Webadmin)" .
 
 <https://bio.tools/mistic-tumour> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_2640,
@@ -306139,7 +317872,7 @@ Missense3D-DB is a database of precomputed structural predictions for ~4M human
     biotools:primaryContact "Sylvie Mader" .
 
 <https://bio.tools/mistic2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0130,
         edam:topic_0602,
@@ -306157,8 +317890,61 @@ Missense3D-DB is a database of precomputed structural predictions for ~4M human
     sc:softwareVersion "2.1.16" ;
     sc:url "https://mistic2.leloir.org.ar/" .
 
+<https://bio.tools/mistic_predictor> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script",
+        "Web API",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0199,
+        edam:topic_0622,
+        edam:topic_2269,
+        edam:topic_3063,
+        edam:topic_3325,
+        edam:topic_3474,
+        edam:topic_3676 ;
+    sc:author <https://orcid.org/0000-0001-9268-6748>,
+        <https://orcid.org/0000-0002-0807-6363> ;
+    sc:citation <https://doi.org/10.1371/journal.pone.0236962>,
+        "pmcid:PMC7394404",
+        "pubmed:32735577" ;
+    sc:contributor <https://orcid.org/0000-0002-7134-3217> ;
+    sc:description "MISTIC (MISsense deleTeriousness predICtor), a prediction tool to reveal disease-relevant deleterious missense variants based on an original combination of two complementary machine learning algorithms using a soft voting system that integrates 113 missense features, ranging from multi-ethnic minor allele frequencies and evolutionary conservation, to physiochemical and biochemical properties of amino acids." ;
+    sc:featureList edam:operation_0331,
+        edam:operation_3225,
+        edam:operation_3226 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "MISTIC" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareVersion "1.0" ;
+    sc:url "http://lbgi.fr/mistic" ;
+    biotools:primaryContact <https://orcid.org/0000-0001-9268-6748>,
+        <https://orcid.org/0000-0002-7134-3217> .
+
+<https://bio.tools/mistic_t-sne> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0610,
+        edam:topic_0625,
+        edam:topic_3360,
+        edam:topic_3382 ;
+    sc:citation <https://doi.org/10.1101/2021.10.08.463728> ;
+    sc:description "An open-source multiplexed image t-SNE viewer." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3443 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "Mistic" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://mistic-rtd.readthedocs.io/en/latest/> ;
+    sc:url "https://github.com/MathOnco/Mistic" .
+
 <https://bio.tools/mit_splice_predictor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0114,
         edam:topic_0203,
@@ -306182,7 +317968,7 @@ Missense3D-DB is a database of precomputed structural predictions for ~4M human
     biotools:primaryContact "Chris Burge" .
 
 <https://bio.tools/mitar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_3474,
@@ -306196,7 +317982,7 @@ Missense3D-DB is a database of precomputed structural predictions for ~4M human
     sc:url "https://github.com/tjgu/miTAR" .
 
 <https://bio.tools/mitch> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0602,
@@ -306221,7 +318007,7 @@ mitch is an R package for multi-contrast enrichment analysis.""" ;
     sc:url "https://bioconductor.org/packages/mitch" .
 
 <https://bio.tools/mite_digger> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0654 ;
     sc:citation <https://doi.org/10.1186/1471-2105-14-186> ;
@@ -306234,7 +318020,7 @@ mitch is an R package for multi-contrast enrichment analysis.""" ;
     sc:url "http://labs.csb.utoronto.ca/yang/MITEDigger/" .
 
 <https://bio.tools/mitea> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0099,
@@ -306250,7 +318036,7 @@ mitch is an R package for multi-contrast enrichment analysis.""" ;
     sc:url "http://cbl-gorilla.cs.technion.ac.il/miTEA/" .
 
 <https://bio.tools/mitgard> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0621,
@@ -306272,7 +318058,7 @@ MITGARD (Mitochondrial Genome Assembly from RNA-seq Data) is a computational too
     sc:url "https://github.com/pedronachtigall/MITGARD" .
 
 <https://bio.tools/mitimpact> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0154,
@@ -306292,12 +318078,15 @@ MitImpact is a collection of pre-computed pathogenicity predictions for all poss
     sc:url "http://mitimpact.css-mendel.it" .
 
 <https://bio.tools/mitoXplorer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0199,
         edam:topic_0602 ;
-    sc:citation <https://doi.org/10.1101/641423> ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAC306>,
+        <https://doi.org/10.1101/641423>,
+        "pmcid:PMC9252804",
+        "pubmed:35524562" ;
     sc:description "Visual data mining platform to systematically analyze and visualize mitochondrial expression dynamics and mutations." ;
     sc:featureList edam:operation_0337,
         edam:operation_3891 ;
@@ -306308,11 +318097,13 @@ MitImpact is a collection of pre-computed pathogenicity predictions for all poss
         "Mac",
         "Windows" ;
     sc:softwareHelp <http://mitoxplorer.ibdm.univ-mrs.fr/about.html> ;
-    sc:url "http://mitoxplorer.ibdm.univ-mrs.fr" ;
-    biotools:primaryContact "Bianca Habermann" .
+    sc:softwareVersion "1.0",
+        "2.0" ;
+    sc:url "http://mitoxplorer2.ibdm.univ-mrs.fr/index.php" ;
+    biotools:primaryContact <https://orcid.org/0000-0002-2457-7504> .
 
 <https://bio.tools/mitobank> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0654 ;
@@ -306327,7 +318118,7 @@ MitImpact is a collection of pre-computed pathogenicity predictions for all poss
     sc:url "http://darwin.uvigo.es/software/mitobank.html" .
 
 <https://bio.tools/mitobreak> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_2229,
@@ -306346,7 +318137,7 @@ MitImpact is a collection of pre-computed pathogenicity predictions for all poss
     biotools:primaryContact "Support" .
 
 <https://bio.tools/mitocarta> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -306367,13 +318158,8 @@ MitoCarta3.0 is an inventory of 1136 human and 1140 mouse genes encoding protein
     sc:softwareVersion "3.0" ;
     sc:url "http://www.broadinstitute.org/mitocarta" .
 
-<https://bio.tools/mitochondrial_dna_mtdna_sequencing> a sc:SoftwareApplication ;
-    sc:description "Mitochondrial DNA sequencing is available on both Illumina’s MiSeq, and PacBio Sequel System. Illumina next-generation sequencing (NGS) has the potential to transform mtDNA analysis. Take advantage of PacBio’s long reads, CD Genomics present amplification-free, full-length sequencing of linearized mtDNA. Full-length sequencing allows variant phasing along the entire mitochondrial genome, identification of heteroplasmic variants, and detection of epigenetic modifications that are lost in amplicon-based methods." ;
-    sc:name "Mitochondrial DNA (mtDNA) sequencing" ;
-    sc:url "https://www.cd-genomics.com/Mitochondrial-DNA-mtDNA-sequencing.html" .
-
 <https://bio.tools/mitocounter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0654,
@@ -306387,8 +318173,26 @@ MitoCarta3.0 is an inventory of 1136 human and 1140 mouse genes encoding protein
     sc:url "http://sourceforge.net/projects/mitocounter/?source=navbar" ;
     biotools:primaryContact "Cheng-Yan Kao" .
 
+<https://bio.tools/mitodataclean> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0084,
+        edam:topic_0199,
+        edam:topic_2640,
+        edam:topic_3168,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1002/IJC.33927>,
+        "pubmed:35001369" ;
+    sc:description "A machine learning approach for the accurate identification of cross-contamination-derived tumor mitochondrial DNA mutations." ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "mitoDataclean" ;
+    sc:operatingSystem "Mac",
+        "Windows" ;
+    sc:url "https://github.com/3150129019/mitoDataclean" .
+
 <https://bio.tools/mitofish> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0654,
@@ -306408,7 +318212,7 @@ MitoCarta3.0 is an inventory of 1136 human and 1140 mouse genes encoding protein
     biotools:primaryContact "Wataru Iwasaki" .
 
 <https://bio.tools/mitoflex> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
@@ -306429,7 +318233,7 @@ MitoFlex is a Python3 based toolkit designated for mitochondrial genome assembli
     sc:url "https://github.com/Prunoideae/MitoFlex" .
 
 <https://bio.tools/mitofy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0622,
@@ -306445,7 +318249,7 @@ MitoFlex is a Python3 based toolkit designated for mitochondrial genome assembli
     sc:url "http://dogma.ccbb.utexas.edu/mitofy/" .
 
 <https://bio.tools/mitogenesisdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0203,
@@ -306470,8 +318274,25 @@ MitoFlex is a Python3 based toolkit designated for mitochondrial genome assembli
         "Jean-Christophe GELLY",
         "Mickael ORGEUR" .
 
+<https://bio.tools/mitohifi> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0080,
+        edam:topic_0196,
+        edam:topic_0622 ;
+    sc:citation <https://doi.org/10.1111/1755-0998.13160> ;
+    sc:description "Find, circularise and annotate mitogenome from PacBio assemblies" ;
+    sc:featureList edam:operation_0362,
+        edam:operation_0524,
+        edam:operation_0525,
+        edam:operation_2995 ;
+    sc:license "MIT" ;
+    sc:name "MitoHiFi" ;
+    sc:softwareVersion "2.2" ;
+    sc:url "https://github.com/marcelauliano/MitoHiFi" .
+
 <https://bio.tools/mitolink> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
@@ -306493,7 +318314,7 @@ MitoFlex is a Python3 based toolkit designated for mitochondrial genome assembli
     sc:url "https://ab-openlab.csir.res.in/mitolink/" .
 
 <https://bio.tools/mitominer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0621,
@@ -306516,18 +318337,18 @@ MitoFlex is a Python3 based toolkit designated for mitochondrial genome assembli
 
 <https://bio.tools/mitoode> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3108" ;
-            sc:name "Experimental measurement" ;
-            sc:sameAs "http://edamontology.org/data_3108" ] ;
+            sc:additionalType "http://edamontology.org/data_3108" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "Experimental measurement" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1772" ;
-            sc:name "Score" ;
-            sc:sameAs "http://edamontology.org/data_1772" ],
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "Plot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1772" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "Score" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0625,
@@ -306551,7 +318372,7 @@ MitoFlex is a Python3 based toolkit designated for mitochondrial genome assembli
         "Gregoire Pau" .
 
 <https://bio.tools/mitopaths> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2229,
@@ -306574,7 +318395,7 @@ MitoFlex is a Python3 based toolkit designated for mitochondrial genome assembli
         "Silvia Crafa" .
 
 <https://bio.tools/mitophast> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_2229,
@@ -306589,7 +318410,7 @@ MitoFlex is a Python3 based toolkit designated for mitochondrial genome assembli
     biotools:primaryContact "Tan Mun Hua" .
 
 <https://bio.tools/mitophen> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0625,
@@ -306608,7 +318429,7 @@ MitoFlex is a Python3 based toolkit designated for mitochondrial genome assembli
     biotools:primaryContact <https://orcid.org/0000-0002-7065-6617> .
 
 <https://bio.tools/mitophen_database> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0625,
@@ -306631,7 +318452,7 @@ MitoFlex is a Python3 based toolkit designated for mitochondrial genome assembli
     sc:url "http://www.mitophen.org" .
 
 <https://bio.tools/mitopred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -306648,7 +318469,7 @@ MitoFlex is a Python3 based toolkit designated for mitochondrial genome assembli
     sc:url "http://bioinformatics.albany.edu/~mitopred/" .
 
 <https://bio.tools/mitoprot_ii> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0078,
@@ -306667,14 +318488,14 @@ MitoFlex is a Python3 based toolkit designated for mitochondrial genome assembli
 
 <https://bio.tools/mitos> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1234" ;
-            sc:name "Sequence set (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1234" ] ;
+            sc:additionalType "http://edamontology.org/data_1234" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence set (nucleic acid)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2084" ;
-            sc:name "Nucleic acid report" ;
-            sc:sameAs "http://edamontology.org/data_2084" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2084" ;
+            sc:encodingFormat "http://edamontology.org/format_2305" ;
+            sc:name "Nucleic acid report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_3500,
@@ -306687,8 +318508,32 @@ MitoFlex is a Python3 based toolkit designated for mitochondrial genome assembli
     sc:softwareHelp <http://mitos.bioinf.uni-leipzig.de/help.py#example> ;
     sc:url "http://mitos.bioinf.uni-leipzig.de/index.py" .
 
+<https://bio.tools/mitoscape> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_2229,
+        edam:topic_3168,
+        edam:topic_3474,
+        edam:topic_3577 ;
+    sc:citation <https://doi.org/10.1371/JOURNAL.PCBI.1009594>,
+        "pmcid:PMC8610268",
+        "pubmed:34762648" ;
+    sc:description "A big-data, machine-learning platform for obtaining mitochondrial DNA from next-generation sequencing data." ;
+    sc:featureList edam:operation_0292,
+        edam:operation_0308,
+        edam:operation_3227,
+        edam:operation_3891 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Apache-2.0" ;
+    sc:name "MitoScape" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/larryns/MitoScape" .
+
 <https://bio.tools/mitoseek> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_2229,
@@ -306702,7 +318547,7 @@ MitoFlex is a Python3 based toolkit designated for mitochondrial genome assembli
     sc:url "https://github.com/riverlee/MitoSeek" .
 
 <https://bio.tools/mitosegnet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0625,
@@ -306726,7 +318571,7 @@ All scripts used to generate statistical and visual data shown in the MitoSegNet
     sc:url "https://zenodo.org/search?page=1&size=20&q=mitosegnet" .
 
 <https://bio.tools/mitotip> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0625,
@@ -306746,7 +318591,7 @@ All scripts used to generate statistical and visual data shown in the MitoSegNet
     biotools:primaryContact "Neal Sondheimer" .
 
 <https://bio.tools/mitotool> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654,
@@ -306764,7 +318609,7 @@ All scripts used to generate statistical and visual data shown in the MitoSegNet
     biotools:primaryContact "Yong-Gang Yao" .
 
 <https://bio.tools/mitotoolpy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_2229,
@@ -306781,7 +318626,7 @@ All scripts used to generate statistical and visual data shown in the MitoSegNet
     biotools:primaryContact "Long Fan" .
 
 <https://bio.tools/mitotox> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
@@ -306805,8 +318650,32 @@ All scripts used to generate statistical and visual data shown in the MitoSegNet
     sc:softwareHelp <https://www.mitotox.org/about/> ;
     sc:url "http://www.mitotox.org" .
 
+<https://bio.tools/mitovisualize> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2299" ;
+            sc:name "Gene name" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0097,
+        edam:topic_0099,
+        edam:topic_0654 ;
+    sc:citation <https://doi.org/10.1093/bioinformatics/btac216>,
+        "pubmed:35412583" ;
+    sc:description "MitoVisualize is a tool for analysis of variants in human mitochondrial RNAs and DNA." ;
+    sc:featureList edam:operation_0502,
+        edam:operation_0570,
+        edam:operation_3197 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "MitoVisualize" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://mitovisualize.org/api> ;
+    sc:url "https://www.mitovisualize.org/" .
+
 <https://bio.tools/mitozoa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_3299 ;
     sc:citation <https://doi.org/10.1016/j.mito.2010.01.004> ;
@@ -306823,7 +318692,7 @@ All scripts used to generate statistical and visual data shown in the MitoSegNet
     biotools:primaryContact "Graziano Pesole" .
 
 <https://bio.tools/mitpred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_2229,
@@ -306837,11 +318706,11 @@ All scripts used to generate statistical and visual data shown in the MitoSegNet
         "Mac",
         "Windows" ;
     sc:softwareHelp <http://crdd.osdd.net/raghava/mitpred/> ;
-    sc:url "http://www.imtech.res.in/raghava/mitpred/" ;
+    sc:url "http://webs.iiitd.edu.in/raghava/mitpred/" ;
     biotools:primaryContact "G.P.S.Raghava" .
 
 <https://bio.tools/mitree> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0203 ;
     sc:citation "pubmed:11262950" ;
@@ -306853,7 +318722,7 @@ All scripts used to generate statistical and visual data shown in the MitoSegNet
     sc:url "http://www.snubi.org/software/MITree/" .
 
 <https://bio.tools/mitsu> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3125,
@@ -306870,7 +318739,7 @@ All scripts used to generate statistical and visual data shown in the MitoSegNet
     biotools:primaryContact "Alastair M. Kilpatrick" .
 
 <https://bio.tools/mity> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0625,
@@ -306889,7 +318758,7 @@ Technically you can run mity call and mity normalise separately, but since mity
     sc:url "https://github.com/KCCG/mity" .
 
 <https://bio.tools/mix> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196 ;
     sc:author "Alexis Groppi",
@@ -306915,7 +318784,7 @@ Technically you can run mity call and mity normalise separately, but since mity
     biotools:primaryContact "Alexis Groppi" .
 
 <https://bio.tools/mix99> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3055 ;
@@ -306931,7 +318800,7 @@ Technically you can run mity call and mity normalise separately, but since mity
     sc:url "https://portal.mtt.fi/portal/page/portal/mtt_en/mtt/about/researchunits/bel/biometricalgenetics/software/MiX99" .
 
 <https://bio.tools/mixNBHMM> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_2269,
@@ -306951,7 +318820,7 @@ mixNBHMM is an R package for the detection of genomic regions exhibiting short a
     sc:url "https://github.com/plbaldoni/mixNBHMM" .
 
 <https://bio.tools/mixblup> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3055 ;
     sc:description "Modern genetic evaluation system for all breeding organizations. It estimates genetic merit of individuals using observations and family relationships, given the components of variance." ;
@@ -306965,7 +318834,7 @@ mixNBHMM is an R package for the detection of genomic regions exhibiting short a
     sc:url "http://www.mixblup.eu" .
 
 <https://bio.tools/mixchip> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_3125,
@@ -306983,7 +318852,7 @@ mixNBHMM is an R package for the detection of genomic regions exhibiting short a
         "Sini Rautio" .
 
 <https://bio.tools/mixclone> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0122,
         edam:topic_2640 ;
@@ -307000,7 +318869,7 @@ mixNBHMM is an R package for the detection of genomic regions exhibiting short a
     sc:url "https://github.com/uci-cbcl/MixClone" .
 
 <https://bio.tools/mixdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121 ;
     sc:citation <https://doi.org/10.1074/mcp.M111.010017> ;
@@ -307013,8 +318882,27 @@ mixNBHMM is an R package for the detection of genomic regions exhibiting short a
     sc:softwareVersion "1.0r" ;
     sc:url "http://proteomics.ucsd.edu/software-tools/mixdb/" .
 
+<https://bio.tools/mixedcca> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_2269,
+        edam:topic_2640,
+        edam:topic_3697 ;
+    sc:citation <https://doi.org/10.1080/10618600.2021.1882468>,
+        "pmcid:PMC8916743",
+        "pubmed:35280976" ;
+    sc:description "The R package mixedCCA implements sparse canonical correlation analysis for data of mixed types: continuous, binary or zero-inflated (truncated continuous)." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3799 ;
+    sc:license "Not licensed" ;
+    sc:name "mixedCCA" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/irinagain/mixedCCA" .
+
 <https://bio.tools/mixgf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_2269,
@@ -307030,7 +318918,7 @@ mixNBHMM is an R package for the detection of genomic regions exhibiting short a
     sc:url "http://proteomics.ucsd.edu/software-tools/mixgf/" .
 
 <https://bio.tools/mixindependr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0625,
@@ -307055,8 +318943,30 @@ The goal of mixIndependR is to test the mutual independence of mixed genetic mar
     sc:name "mixIndependR" ;
     sc:url "https://cran.r-project.org/web/packages/mixIndependR/index.html" .
 
+<https://bio.tools/mixkernel> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_2269,
+        edam:topic_3307,
+        edam:topic_3391,
+        edam:topic_3569 ;
+    sc:citation <https://doi.org/10.1093/bioinformatics/btx682>,
+        <https://doi.org/10.1093/nargab/lqac014> ;
+    sc:description "Kernel-based methods are powerful methods for integrating heterogeneous types of data. mixKernel aims at providing methods to combine kernel for unsupervised exploratory analysis. Different solutions are provided to compute a meta-kernel, in a consensus way or in a way that best preserves the original topology of the data. mixKernel also integrates kernel PCA to visualize similarities between samples in a non linear space and from the multiple source point of view. Functions to assess and display important variables are also provided in the package." ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "mixKernel" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <http://mixkernel.clementine.wf/articles/a-mixKernelInstallation.html>,
+        <http://mixkernel.clementine.wf/articles/mixKernelUsersGuide.html>,
+        <http://mixkernel.clementine.wf/reference/index.html> ;
+    sc:softwareVersion "0.8" ;
+    sc:url "http://mixkernel.clementine.wf/" .
+
 <https://bio.tools/mixmul> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3053 ;
     sc:citation <https://doi.org/10.1186/1423-0127-16-52> ;
@@ -307068,7 +318978,7 @@ The goal of mixIndependR is to test the mutual independence of mixed genetic mar
     sc:url "http://www.csjfann.ibms.sinica.edu.tw/eag/programlist/MIXMUL/MIXMUL.html" .
 
 <https://bio.tools/mixology> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3314 ;
     sc:citation <https://doi.org/10.1101/2021.01.30.428948> ;
@@ -307083,14 +318993,14 @@ Mixology is a tool that makes it easy to calculate the ingredients needed for me
 
 <https://bio.tools/mixomics> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2082" ;
-            sc:name "Matrix" ;
-            sc:sameAs "http://edamontology.org/data_2082" ] ;
+            sc:additionalType "http://edamontology.org/data_2082" ;
+            sc:encodingFormat "http://edamontology.org/format_3751" ;
+            sc:name "Matrix" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1772" ;
-            sc:name "Score" ;
-            sc:sameAs "http://edamontology.org/data_1772" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1772" ;
+            sc:encodingFormat "http://edamontology.org/format_3751" ;
+            sc:name "Score" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0121,
@@ -307120,7 +319030,7 @@ Mixology is a tool that makes it easy to calculate the ingredients needed for me
     biotools:primaryContact "Australia" .
 
 <https://bio.tools/mixonat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0593,
@@ -307141,7 +319051,7 @@ MixONat allows the dereplication of natural products mixtures using 13C-NMR and
     sc:url "https://sourceforge.net/projects/mixonat" .
 
 <https://bio.tools/mixoviz> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0625,
@@ -307160,7 +319070,7 @@ Detection and visualization of 2n/3n mixoploidy from a VCF. This repo contains t
     sc:url "https://github.com/HudsonAlpha/mixoviz" .
 
 <https://bio.tools/mixscore> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0634,
@@ -307177,7 +319087,7 @@ Detection and visualization of 2n/3n mixoploidy from a VCF. This repo contains t
         "Bogdan Pasaniuc" .
 
 <https://bio.tools/mixsih> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0654 ;
@@ -307191,7 +319101,7 @@ Detection and visualization of 2n/3n mixoploidy from a VCF. This repo contains t
     sc:url "https://sites.google.com/site/hmatsu1226/software/mixsih" .
 
 <https://bio.tools/mixtreem> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0623,
         edam:topic_3293,
@@ -307206,7 +319116,7 @@ Detection and visualization of 2n/3n mixoploidy from a VCF. This repo contains t
     biotools:primaryContact "Ikram Ullah Khattak" .
 
 <https://bio.tools/mixtwice> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -307225,7 +319135,7 @@ Detection and visualization of 2n/3n mixoploidy from a VCF. This repo contains t
     biotools:primaryContact "Michael A Newton" .
 
 <https://bio.tools/mizbee> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0622,
@@ -307244,7 +319154,7 @@ Detection and visualization of 2n/3n mixoploidy from a VCF. This repo contains t
         "Tamara Munzner" .
 
 <https://bio.tools/mkdom> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -307258,7 +319168,7 @@ Detection and visualization of 2n/3n mixoploidy from a VCF. This repo contains t
     sc:url "http://prodom.prabi.fr/prodom/xdom/welcome.html" .
 
 <https://bio.tools/mkdom2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0736 ;
@@ -307273,14 +319183,13 @@ Detection and visualization of 2n/3n mixoploidy from a VCF. This repo contains t
 
 <https://bio.tools/mkesa> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2975" ;
-            sc:name "Nucleic acid sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_2975" ] ;
+            sc:additionalType "http://edamontology.org/data_2975" ;
+            sc:encodingFormat "http://edamontology.org/format_2187" ;
+            sc:name "Nucleic acid sequence (raw)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3210" ;
-            sc:name "Genome index" ;
-            sc:sameAs "http://edamontology.org/data_3210" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3210" ;
+            sc:name "Genome index" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3071 ;
@@ -307301,7 +319210,7 @@ Detection and visualization of 2n/3n mixoploidy from a VCF. This repo contains t
     sc:url "http://bibiserv.cebitec.uni-bielefeld.de/mkesa" .
 
 <https://bio.tools/mkt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0199,
@@ -307324,7 +319233,7 @@ Detection and visualization of 2n/3n mixoploidy from a VCF. This repo contains t
         "Sonia Casillas" .
 
 <https://bio.tools/mkvsites> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0176,
@@ -307343,7 +319252,7 @@ Derives Gromacs virtual site parameters (angle constraint, dummy constraints) fo
     sc:url "https://github.com/ErikMarklund/mkvsites" .
 
 <https://bio.tools/ml-assisted-hypersperal-imaging> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3314,
@@ -307365,7 +319274,7 @@ Derives Gromacs virtual site parameters (angle constraint, dummy constraints) fo
     biotools:primaryContact "Orly Liba" .
 
 <https://bio.tools/ml-dbscan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0176,
@@ -307383,8 +319292,29 @@ Derives Gromacs virtual site parameters (angle constraint, dummy constraints) fo
         "Windows" ;
     sc:url "https://github.com/liusong299/ML-DBSCAN" .
 
+<https://bio.tools/ml-locmlfe> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0140,
+        edam:topic_0601,
+        edam:topic_0749,
+        edam:topic_0820,
+        edam:topic_2229 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAB811>,
+        "pmcid:PMC8690230",
+        "pubmed:34864897" ;
+    sc:description "Predicting the multi-label protein subcellular localization through multi-information fusion and MLSI dimensionality reduction based on MLFE classifier." ;
+    sc:featureList edam:operation_2489,
+        edam:operation_3891,
+        edam:operation_3935 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "ML-locMLFE" ;
+    sc:operatingSystem "Windows" ;
+    sc:url "https://github.com/QUST-AIBBDRC/ML-locMLFE/" .
+
 <https://bio.tools/ml-sim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Web application" ;
     sc:applicationSubCategory edam:topic_3382,
@@ -307407,7 +319337,7 @@ Derives Gromacs virtual site parameters (angle constraint, dummy constraints) fo
     sc:url "http://ML-SIM.github.io" .
 
 <https://bio.tools/ml-svr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2259,
@@ -307422,8 +319352,43 @@ Derives Gromacs virtual site parameters (angle constraint, dummy constraints) fo
     sc:url "http://www.cbil.ece.vt.edu/software.htm" ;
     biotools:primaryContact "Jianhua Xuan" .
 
+<https://bio.tools/ml-wpbe> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_2258,
+        edam:topic_3332,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1021/acs.jpclett.1c02506>,
+        "pubmed:34559964" ;
+    sc:contributor <https://orcid.org/0000-0002-0418-0489>,
+        <https://orcid.org/0000-0002-2250-8548>,
+        "Alexander W. Kohn",
+        "Nadav Geva" ;
+    sc:description "ML-wPBE is a machine learned range separated hybrid functional for use in density functional theory (DFT) calculations." ;
+    sc:name "ML-wPBE" ;
+    sc:url "https://github.com/zhoulinumass/ML-wPBE" ;
+    biotools:primaryContact <https://orcid.org/0000-0003-3271-5345> .
+
+<https://bio.tools/ml4bio> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0769,
+        edam:topic_3315,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC233>,
+        "pmcid:PMC9236579",
+        "pubmed:35758797" ;
+    sc:description "An approachable, flexible and practical machine learning workshop for biologists." ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "ML4Bio" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/gitter-lab/ml4bio" .
+
 <https://bio.tools/ml4vis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0769,
@@ -307441,7 +319406,7 @@ Derives Gromacs virtual site parameters (angle constraint, dummy constraints) fo
     sc:url "https://ml4vis.github.io" .
 
 <https://bio.tools/mlasso-hum> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0140,
@@ -307460,7 +319425,7 @@ Derives Gromacs virtual site parameters (angle constraint, dummy constraints) fo
         "Shibiao Wan" .
 
 <https://bio.tools/mlatticeabc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_3448,
@@ -307481,7 +319446,7 @@ Derives Gromacs virtual site parameters (angle constraint, dummy constraints) fo
     sc:url "https://github.com/usccolumbia/MLatticeABC" .
 
 <https://bio.tools/mlbias> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3474 ;
     sc:citation "pubmed:25086004" ;
@@ -307495,8 +319460,39 @@ Derives Gromacs virtual site parameters (angle constraint, dummy constraints) fo
     sc:url "http://tsenglab.biostat.pitt.edu/software.htm#MLbias" ;
     biotools:primaryContact "Tseng GC" .
 
+<https://bio.tools/mlbp> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0121,
+        edam:topic_0154,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1093/BIB/BBAB414>,
+        "pubmed:34651655" ;
+    sc:description "Identifying multi-functional bioactive peptide functions using multi-label deep learning." ;
+    sc:featureList edam:operation_3631 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "MLBP" ;
+    sc:operatingSystem "Linux",
+        "Windows" ;
+    sc:url "https://github.com/xialab-ahu/MLBP" .
+
+<https://bio.tools/mlconfound> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:applicationSubCategory edam:topic_3474 ;
+    sc:description "Tools for analyzing and quantifying effects of confounder variables on machine learning model predictions." ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "mlconfound" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://mlconfound.readthedocs.io/> ;
+    sc:softwareVersion "v0.20" ;
+    sc:url "https://mlconfound.readthedocs.io/" .
+
 <https://bio.tools/mlda> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3365,
         edam:topic_3366 ;
@@ -307516,7 +319512,7 @@ Derives Gromacs virtual site parameters (angle constraint, dummy constraints) fo
     biotools:primaryContact "Sebastian Ventura" .
 
 <https://bio.tools/mlde> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0130,
         edam:topic_0199,
@@ -307534,7 +319530,7 @@ A machine-learning package for navigating combinatorial protein fitness landscap
     sc:url "https://github.com/fhalab/MLDE" .
 
 <https://bio.tools/mldna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2259,
         edam:topic_3308,
@@ -307551,7 +319547,7 @@ A machine-learning package for navigating combinatorial protein fitness landscap
     biotools:primaryContact "Chuang Ma" .
 
 <https://bio.tools/mlefgn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3382,
         edam:topic_3474 ;
@@ -307570,7 +319566,7 @@ Image denoising is a challenging inverse problem due to the complex scenes and i
     sc:url "https://github.com/MIVRC/MLEFGN-PyTorch" .
 
 <https://bio.tools/mlegp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2259 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btn329>,
@@ -307587,7 +319583,7 @@ Image denoising is a challenging inverse problem due to the complex scenes and i
     sc:url "https://gdancik.github.io/bioinformatics/software.html" .
 
 <https://bio.tools/mlgaze> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3473,
@@ -307605,8 +319601,31 @@ A machine learning repository for pattern recognition of gaze errors in consumer
     sc:name "MLGaze" ;
     sc:url "https://github.com/anuradhakar49/MLGaze" .
 
+<https://bio.tools/mlgl-mp> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0602,
+        edam:topic_3336,
+        edam:topic_3375,
+        edam:topic_3407,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC222>,
+        "pmcid:PMC9235472",
+        "pubmed:35758801" ;
+    sc:description "A Multi-Label Graph Learning framework enhanced by pathway interdependence for Metabolic Pathway prediction." ;
+    sc:featureList edam:operation_3660,
+        edam:operation_3926,
+        edam:operation_3929 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "MLGL-MP" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/dubingxue/MLGL-MP" .
+
 <https://bio.tools/mlgt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3168,
@@ -307627,7 +319646,7 @@ A machine learning repository for pattern recognition of gaze errors in consumer
     biotools:primaryContact "Dave T. Gerrard" .
 
 <https://bio.tools/mlhka> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0602,
@@ -307648,7 +319667,7 @@ A machine learning repository for pattern recognition of gaze errors in consumer
     biotools:primaryContact "Stephen Wright" .
 
 <https://bio.tools/mlho> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_3324,
@@ -307671,18 +319690,15 @@ A machine learning repository for pattern recognition of gaze errors in consumer
 
 <https://bio.tools/mlibrary> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ],
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:name "Mass spectrometry spectra" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0944" ;
-            sc:name "Peptide mass fingerprint" ;
-            sc:sameAs "http://edamontology.org/data_0944" ] ;
+            sc:additionalType "http://edamontology.org/data_0944" ;
+            sc:name "Peptide mass fingerprint" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:name "Peptide identification" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_3489 ;
@@ -307702,7 +319718,7 @@ A machine learning repository for pattern recognition of gaze errors in consumer
     sc:url "http://www.sing-group.org/MLibrary/" .
 
 <https://bio.tools/mlinterfaces> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3474 ;
@@ -307720,7 +319736,7 @@ A machine learning repository for pattern recognition of gaze errors in consumer
     biotools:primaryContact "V. Carey" .
 
 <https://bio.tools/mllpa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0153,
         edam:topic_0176,
@@ -307739,12 +319755,25 @@ A machine learning repository for pattern recognition of gaze errors in consumer
         <https://vivien-walter.github.io/mllpa/install/> ;
     sc:url "https://vivien-walter.github.io/mllpa/" .
 
+<https://bio.tools/mlmc> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workflow" ;
+    sc:applicationSubCategory edam:topic_0634,
+        edam:topic_3336,
+        edam:topic_3373 ;
+    sc:citation <https://doi.org/10.1093/BIB/BBAC054>,
+        "pubmed:35289352" ;
+    sc:description "Drug repositioning based on multi-view learning with matrix completion." ;
+    sc:license "Not licensed" ;
+    sc:name "MLMC" ;
+    sc:url "https://github.com/BioinformaticsCSU/MLMC" .
+
 <https://bio.tools/mloc-mrna> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3495" ;
-            sc:name "RNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3495" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3495" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "RNA sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0203,
@@ -307767,7 +319796,7 @@ A machine learning repository for pattern recognition of gaze errors in consumer
     sc:url "http://cabgrid.res.in:8080/mlocmrna/" .
 
 <https://bio.tools/mlodisdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0219,
         edam:topic_0634,
@@ -307788,7 +319817,7 @@ MloDisDB aims to gather MLOs and LLPS related diseases from the dispersed litera
     sc:url "http://mlodis.phasep.pro/" .
 
 <https://bio.tools/mlp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2269 ;
@@ -307806,7 +319835,7 @@ MloDisDB aims to gather MLOs and LLPS related diseases from the dispersed litera
     biotools:primaryContact "Tobias Verbeke" .
 
 <https://bio.tools/mlphaser> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3053 ;
     sc:description "mlPhaser is an R package for phase haplotypes from genotypes based on a list of known haplotypes. Suited to highly diverse loci such as HLA." ;
@@ -307821,14 +319850,13 @@ MloDisDB aims to gather MLOs and LLPS related diseases from the dispersed litera
 
 <https://bio.tools/mlplasmids> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ] ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Nucleic acid sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1270" ;
-            sc:name "Feature table" ;
-            sc:sameAs "http://edamontology.org/data_1270" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1270" ;
+            sc:name "Feature table" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0196,
@@ -307857,7 +319885,7 @@ It currently classifies short-read contigs as chromosomes and plasmids for Enter
     sc:url "https://gitlab.com/sirarredondo/mlplasmids" .
 
 <https://bio.tools/mlr3proba> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3303,
@@ -307879,7 +319907,7 @@ Core learners are implemented in mlr3proba, recommended common learners are impl
     sc:url "https://github.com/mlr-org/mlr3proba" .
 
 <https://bio.tools/mlrMBO> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3518 ;
@@ -307892,7 +319920,7 @@ Core learners are implemented in mlr3proba, recommended common learners are impl
     sc:url "http://github.com/mlr-org/mlrMBO" .
 
 <https://bio.tools/mlrho> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_3056,
@@ -307909,7 +319937,7 @@ Core learners are implemented in mlr3proba, recommended common learners are impl
     biotools:primaryContact "Haubold B" .
 
 <https://bio.tools/mlseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3170,
@@ -307929,14 +319957,14 @@ Core learners are implemented in mlr3proba, recommended common learners are impl
 
 <https://bio.tools/mlst> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_2546" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2955" ;
-            sc:name "Sequence report" ;
-            sc:sameAs "http://edamontology.org/data_2955" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2955" ;
+            sc:encodingFormat "http://edamontology.org/format_2333" ;
+            sc:name "Sequence report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2830 ;
     sc:citation <https://doi.org/10.1128/JCM.06094-11>,
@@ -307956,14 +319984,12 @@ Core learners are implemented in mlr3proba, recommended common learners are impl
 
 <https://bio.tools/mlst-db> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:name "Sequence features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0199 ;
     sc:citation <https://doi.org/10.1186/1471-2105-5-86> ;
@@ -307978,7 +320004,7 @@ Core learners are implemented in mlr3proba, recommended common learners are impl
     sc:url "http://mlstdb.bmc.uu.se/" .
 
 <https://bio.tools/mlst_f> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3174,
@@ -307998,7 +320024,7 @@ Deconvoluting the Diversity of Within-host Pathogen Strain in a MLST Framework."
     sc:url "https://github.com/WGS-TB/MLST" .
 
 <https://bio.tools/mlsta> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_2533,
@@ -308014,7 +320040,7 @@ Deconvoluting the Diversity of Within-host Pathogen Strain in a MLST Framework."
     sc:url "http://www.prc.boun.edu.tr/appserv/prc/mlsta/" .
 
 <https://bio.tools/mltree> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0084 ;
     sc:citation <https://doi.org/10.1016/j.cub.2007.11.058> ;
@@ -308028,7 +320054,7 @@ Deconvoluting the Diversity of Within-host Pathogen Strain in a MLST Framework."
     biotools:primaryContact "MLtree Support" .
 
 <https://bio.tools/mltreemap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_0821,
@@ -308045,8 +320071,30 @@ Deconvoluting the Diversity of Within-host Pathogen Strain in a MLST Framework."
     sc:url "http://mltreemap.org/" ;
     biotools:primaryContact "http://mltreemap.org/treemap_cgi/treemap_input_page.pl?sessionId=pboNF1ki5uQW&userId=so9xq1rVittY" .
 
+<https://bio.tools/mlyspred> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0601,
+        edam:topic_3373 ;
+    sc:citation <https://doi.org/10.1093/BIB/BBAC277>,
+        "pubmed:35953081" ;
+    sc:description "Graph-based multi-view clustering and multi-dimensional normal distribution resampling techniques to predict multiple lysine sites." ;
+    sc:featureList edam:operation_0417,
+        edam:operation_3435,
+        edam:operation_3645 ;
+    sc:isAccessibleForFree true ;
+    sc:name "MLysPRED" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://47.100.136.41:8181" .
+
 <https://bio.tools/mm-ismsa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0176,
@@ -308062,7 +320110,7 @@ Deconvoluting the Diversity of Within-host Pathogen Strain in a MLST Framework."
     sc:url "http://ub.cbm.uam.es/software/mmismsa.php" .
 
 <https://bio.tools/mmannot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0659,
@@ -308082,7 +320130,7 @@ For instance, suppose that you have sequenced your organism of interest with sRN
     sc:url "https://github.com/mzytnicki/mmannot" .
 
 <https://bio.tools/mmappr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0102,
@@ -308100,26 +320148,26 @@ For instance, suppose that you have sequenced your organism of interest with sRN
 
 <https://bio.tools/mmass> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ],
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3654" ;
+            sc:name "Mass spectrometry spectra" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ],
+            sc:additionalType "http://edamontology.org/data_0944" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Peptide mass fingerprint" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0944" ;
-            sc:name "Peptide mass fingerprint" ;
-            sc:sameAs "http://edamontology.org/data_0944" ] ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3654" ;
+            sc:name "Mass spectrometry spectra" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ],
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Peptide identification" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Image" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0153,
@@ -308154,7 +320202,7 @@ For instance, suppose that you have sequenced your organism of interest with sRN
     sc:url "http://www.mmass.org/" .
 
 <https://bio.tools/mmb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_2275 ;
@@ -308170,38 +320218,38 @@ For instance, suppose that you have sequenced your organism of interest with sRN
 
 <https://bio.tools/mmb_api> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3021" ;
-            sc:name "UniProt accession" ;
-            sc:sameAs "http://edamontology.org/data_3021" ],
+            sc:additionalType "http://edamontology.org/data_1005" ;
+            sc:encodingFormat "http://edamontology.org/format_1964" ;
+            sc:name "HET group name" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1005" ;
-            sc:name "HET group name" ;
-            sc:sameAs "http://edamontology.org/data_1005" ],
+            sc:additionalType "http://edamontology.org/data_3021" ;
+            sc:encodingFormat "http://edamontology.org/format_1964" ;
+            sc:name "UniProt accession" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1011" ;
-            sc:name "EC number" ;
-            sc:sameAs "http://edamontology.org/data_1011" ],
+            sc:additionalType "http://edamontology.org/data_1011" ;
+            sc:encodingFormat "http://edamontology.org/format_1964" ;
+            sc:name "EC number" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1127" ;
-            sc:name "PDB ID" ;
-            sc:sameAs "http://edamontology.org/data_1127" ] ;
+            sc:additionalType "http://edamontology.org/data_1127" ;
+            sc:encodingFormat "http://edamontology.org/format_1964" ;
+            sc:name "PDB ID" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0883" ;
-            sc:name "Structure" ;
-            sc:sameAs "http://edamontology.org/data_0883" ],
+            sc:additionalType "http://edamontology.org/data_2886" ;
+            sc:encodingFormat "http://edamontology.org/format_3464" ;
+            sc:name "Protein sequence record" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2974" ;
-            sc:name "Protein sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_2974" ],
+            sc:additionalType "http://edamontology.org/data_1463" ;
+            sc:encodingFormat "http://edamontology.org/format_1705" ;
+            sc:name "Small molecule structure" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1463" ;
-            sc:name "Small molecule structure" ;
-            sc:sameAs "http://edamontology.org/data_1463" ],
+            sc:additionalType "http://edamontology.org/data_0883" ;
+            sc:encodingFormat "http://edamontology.org/format_1477" ;
+            sc:name "Structure" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2886" ;
-            sc:name "Protein sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2886" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2974" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence (raw)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0081 ;
@@ -308216,7 +320264,7 @@ For instance, suppose that you have sequenced your organism of interest with sRN
     biotools:primaryContact "Josep Ll. Gelpi" .
 
 <https://bio.tools/mmbgx> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0203,
@@ -308234,11 +320282,10 @@ For instance, suppose that you have sequenced your organism of interest with sRN
     biotools:primaryContact "Sylvia Richardson" .
 
 <https://bio.tools/mmbpred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0130,
-        edam:topic_2533,
-        edam:topic_2830 ;
+        edam:topic_2533 ;
     sc:citation "pubmed:14511568" ;
     sc:description "Server of prediction of of MHC class I binders which can bind to wide range of MHC alleles with high affinity. This server has potential to develop sub-unit vaccine for large population." ;
     sc:featureList edam:operation_1777 ;
@@ -308247,11 +320294,11 @@ For instance, suppose that you have sequenced your organism of interest with sRN
         "Mac",
         "Windows" ;
     sc:softwareHelp <http://crdd.osdd.net/raghava/mmbpred/> ;
-    sc:url "http://www.imtech.res.in/raghava/mmbpred/" ;
+    sc:url "http://webs.iiitd.edu.in/raghava/mmbpred/" ;
     biotools:primaryContact "Dr.G.P.S.Raghava" .
 
 <https://bio.tools/mmcif_dictionary_suite> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102 ;
     sc:description "MMCIF Dictionary Suite is a collection of tools to parse, validate, manage data dictionaries used by the PDB. Applications are also included, which convert data dictionaries to XML schema, provide HTML browsing, produce mapping information for relational database loaders (Db Loader) and convert data files between related CIF dialects" ;
@@ -308264,7 +320311,7 @@ For instance, suppose that you have sequenced your organism of interest with sRN
     sc:url "http://sw-tools.rcsb.org/apps/MMCIF-DICT-SUITE/index.html" .
 
 <https://bio.tools/mmcp-counter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_2640,
@@ -308284,8 +320331,36 @@ Murine version of MCP-counter, a tool to estimate the immune and stromal composi
     sc:name "mMCP-counter" ;
     sc:url "https://github.com/cit-bioinfo/mMCP-counter" .
 
+<https://bio.tools/mmcsm-na> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein structure" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0077,
+        edam:topic_0128,
+        edam:topic_0130,
+        edam:topic_0154,
+        edam:topic_0199 ;
+    sc:citation <https://doi.org/10.1093/NARGAB/LQAB109>,
+        "pmcid:PMC8600011",
+        "pubmed:34805992" ;
+    sc:description "Accurately predicting effects of single and multiple mutations on protein-nucleic acid binding affinity." ;
+    sc:featureList edam:operation_0331,
+        edam:operation_0420,
+        edam:operation_0478,
+        edam:operation_0480,
+        edam:operation_3799 ;
+    sc:isAccessibleForFree true ;
+    sc:name "mmCSM-NA" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://biosig.unimelb.edu.au/mmcsm_na" .
+
 <https://bio.tools/mmcsm-ppi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
@@ -308308,7 +320383,7 @@ Murine version of MCP-counter, a tool to estimate the immune and stromal composi
         <https://orcid.org/0000-0003-2948-2413> .
 
 <https://bio.tools/mmdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0082,
@@ -308331,7 +320406,7 @@ Murine version of MCP-counter, a tool to estimate the immune and stromal composi
     biotools:primaryContact "Stephen H. Bryant" .
 
 <https://bio.tools/mmdb_mouse> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0219,
         edam:topic_0625,
@@ -308353,7 +320428,7 @@ Identify frequently found bacterial species in the gastrointestinal tract of hea
     sc:url "http://leb.snu.ac.kr/mmdb/" .
 
 <https://bio.tools/mmdiff2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -308373,7 +320448,7 @@ Identify frequently found bacterial species in the gastrointestinal tract of hea
     biotools:primaryContact "Gabriele Schweikert" .
 
 <https://bio.tools/mmdit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0654,
@@ -308393,7 +320468,7 @@ Identify frequently found bacterial species in the gastrointestinal tract of hea
     sc:url "https://www.unthsc.edu/mmdit/" .
 
 <https://bio.tools/mmease> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -308410,7 +320485,7 @@ Identify frequently found bacterial species in the gastrointestinal tract of hea
     sc:url "https://idrblab.org/mmease/" .
 
 <https://bio.tools/mmeta> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0160 ;
@@ -308432,7 +320507,7 @@ Identify frequently found bacterial species in the gastrointestinal tract of hea
     biotools:primaryContact "Enrique Blanco" .
 
 <https://bio.tools/mmeta-marker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3303,
@@ -308451,7 +320526,7 @@ Identify frequently found bacterial species in the gastrointestinal tract of hea
         "Ni Zhao" .
 
 <https://bio.tools/mmge> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0625,
@@ -308470,8 +320545,22 @@ Extrachromosomal mobile genetic elements (eMGEs), including phages and plasmids,
     sc:name "mMGE" ;
     sc:url "https://mgedb.comp-sysbio.org" .
 
+<https://bio.tools/mmgl> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workbench" ;
+    sc:applicationSubCategory edam:topic_0634,
+        edam:topic_3384 ;
+    sc:citation <https://doi.org/10.1109/TMI.2022.3159264>,
+        "pubmed:35286257" ;
+    sc:description "an end-to-end Multi-modal Graph Learning framework (MMGL) for disease prediction with multi-modality" ;
+    sc:featureList edam:operation_3436 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "MMGL" ;
+    sc:url "https://github.com/SsGood/MMGL" .
+
 <https://bio.tools/mmhub> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0780,
@@ -308493,7 +320582,7 @@ Comprehensively, freely, and User-friendly.""" ;
     sc:url "https://biodb.swu.edu.cn/mmdb/" .
 
 <https://bio.tools/mmia> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0659,
@@ -308508,7 +320597,7 @@ Comprehensively, freely, and User-friendly.""" ;
     sc:url "http://cancer.informatics.indiana.edu/mmia" .
 
 <https://bio.tools/mml> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0623,
         edam:topic_3053,
@@ -308524,7 +320613,7 @@ Comprehensively, freely, and User-friendly.""" ;
     biotools:primaryContact "Xin Li" .
 
 <https://bio.tools/mmligner> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0632,
         edam:topic_2269 ;
@@ -308537,7 +320626,7 @@ Comprehensively, freely, and User-friendly.""" ;
     sc:url "http://lcb.infotech.monash.edu.au/seqmmligner" .
 
 <https://bio.tools/mmmdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0602,
@@ -308557,7 +320646,7 @@ Comprehensively, freely, and User-friendly.""" ;
     biotools:primaryContact "Masahiro SUGIMOTO" .
 
 <https://bio.tools/mmmvi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_3174,
@@ -308578,7 +320667,7 @@ Comprehensively, freely, and User-friendly.""" ;
     sc:url "https://github.com/dorbarker/voc-identify/" .
 
 <https://bio.tools/mmnet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0602,
@@ -308600,7 +320689,7 @@ Comprehensively, freely, and User-friendly.""" ;
         "Yang Cao" .
 
 <https://bio.tools/mmp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0622,
@@ -308631,7 +320720,7 @@ Comprehensively, freely, and User-friendly.""" ;
     sc:url "https://mmp.sfb.uit.no/" .
 
 <https://bio.tools/mmpalatemirna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -308651,7 +320740,7 @@ Comprehensively, freely, and User-friendly.""" ;
     biotools:primaryContact "Guy Brock" .
 
 <https://bio.tools/mmpred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0130,
@@ -308669,7 +320758,7 @@ Distance-assisted multimodal conformation sampling for de novo protein structure
     sc:url "https://github.com/iobio-zjut/MMpred" .
 
 <https://bio.tools/mmquant> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3170 ;
@@ -308685,7 +320774,7 @@ Distance-assisted multimodal conformation sampling for de novo protein structure
     biotools:primaryContact "Matthias Zytnicki" .
 
 <https://bio.tools/mmr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0797,
@@ -308702,7 +320791,7 @@ Distance-assisted multimodal conformation sampling for de novo protein structure
     biotools:primaryContact "MSKCC – Computational Biology Center" .
 
 <https://bio.tools/mmrfbiolinks> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_2640,
@@ -308720,7 +320809,7 @@ Distance-assisted multimodal conformation sampling for de novo protein structure
     biotools:primaryContact "Mario Cannataro" .
 
 <https://bio.tools/mmrrc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0621,
@@ -308746,7 +320835,7 @@ Distance-assisted multimodal conformation sampling for de novo protein structure
     sc:url "http://med.unc.edu/mmrrc" .
 
 <https://bio.tools/mms2plot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -308765,7 +320854,7 @@ The package mms2plot visualizes multiple tandem mass spectrometry (MS/MS or MS2)
     sc:url "https://github.com/lileir/MMS2plot" .
 
 <https://bio.tools/mmsdusty> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2258 ;
     sc:citation <https://doi.org/10.1002/minf.201300061> ;
@@ -308782,7 +320871,7 @@ The package mms2plot visualizes multiple tandem mass spectrometry (MS/MS or MS2)
     biotools:primaryContact "Stefano Moro" .
 
 <https://bio.tools/mmseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3170 ;
@@ -308797,7 +320886,7 @@ The package mms2plot visualizes multiple tandem mass spectrometry (MS/MS or MS2)
     biotools:primaryContact "Ernest Turro" .
 
 <https://bio.tools/mmseqs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0623 ;
@@ -308813,7 +320902,7 @@ The package mms2plot visualizes multiple tandem mass spectrometry (MS/MS or MS2)
     biotools:primaryContact "Johannes Söding" .
 
 <https://bio.tools/mmsig> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0203,
@@ -308834,7 +320923,7 @@ The package mms2plot visualizes multiple tandem mass spectrometry (MS/MS or MS2)
         <https://orcid.org/0000-0002-5017-1620> .
 
 <https://bio.tools/mmsim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_3068,
         edam:topic_3077,
@@ -308850,7 +320939,7 @@ Parent repository for the MMSIM framework which currently includes MMSIMPlugin a
     sc:url "https://github.com/ctr26/MMSIM" .
 
 <https://bio.tools/mmsinc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_2258 ;
     sc:citation <https://doi.org/10.1093/nar/gkn727> ;
@@ -308866,7 +320955,7 @@ Parent repository for the MMSIM framework which currently includes MMSIMPlugin a
     biotools:primaryContact "Stefano Moro" .
 
 <https://bio.tools/mmssimilarity> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2258 ;
     sc:description "Web-oriented tool developed with the specific aim to calculate chemical similarity indexes between a query structure and a chemical database." ;
@@ -308881,7 +320970,7 @@ Parent repository for the MMSIM framework which currently includes MMSIMPlugin a
     biotools:primaryContact "Stefano Moro" .
 
 <https://bio.tools/mmtsb_toolset> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_1317,
@@ -308896,20 +320985,43 @@ Parent repository for the MMSIM framework which currently includes MMSIMPlugin a
     sc:softwareHelp <https://github.com/mmtsb/toolset> ;
     sc:url "http://blue11.bch.msu.edu/mmtsb/Main_Page" .
 
+<https://bio.tools/mmvdb> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0659,
+        edam:topic_2830,
+        edam:topic_3379,
+        edam:topic_3930,
+        edam:topic_3966 ;
+    sc:citation <https://doi.org/10.1093/DATABASE/BAAB063>,
+        "pmcid:PMC8533362",
+        "pubmed:34679165" ;
+    sc:description "Vaccinomics and RNA-based therapeutics database for infectious hemorrhagic fever-causing mammarenaviruses." ;
+    sc:featureList edam:operation_0252,
+        edam:operation_0416,
+        edam:operation_0560 ;
+    sc:isAccessibleForFree true ;
+    sc:name "MMVdb" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://www.mmvdb.dqweilab-sjtu.com/index.php" .
+
 <https://bio.tools/mmvec> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2082" ;
-            sc:name "Matrix" ;
-            sc:sameAs "http://edamontology.org/data_2082" ] ;
+            sc:additionalType "http://edamontology.org/data_2082" ;
+            sc:encodingFormat "http://edamontology.org/format_3746" ;
+            sc:name "Matrix" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ],
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_1915" ;
+            sc:name "Plot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2082" ;
-            sc:name "Matrix" ;
-            sc:sameAs "http://edamontology.org/data_2082" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2082" ;
+            sc:encodingFormat "http://edamontology.org/format_1915" ;
+            sc:name "Matrix" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3172,
@@ -308928,7 +321040,7 @@ Parent repository for the MMSIM framework which currently includes MMSIMPlugin a
     sc:url "https://github.com/biocore/mmvec" .
 
 <https://bio.tools/mmx-i> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_2828,
         edam:topic_3452 ;
@@ -308945,7 +321057,7 @@ Parent repository for the MMSIM framework which currently includes MMSIMPlugin a
     biotools:primaryContact "Antoine Bergamaschi" .
 
 <https://bio.tools/mndr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0621,
@@ -308968,8 +321080,29 @@ MNDR (Mammalian ncRNA-Disease Repository) is a database that curated association
     sc:softwareVersion "3.0" ;
     sc:url "http://www.rna-society.org/mndr/" .
 
+<https://bio.tools/mne-bids> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0621,
+        edam:topic_3300,
+        edam:topic_3384 ;
+    sc:citation <https://doi.org/10.21105/JOSS.01896>,
+        "pmcid:PMC9390980",
+        "pubmed:35990374" ;
+    sc:description "Organizing electrophysiological data into the BIDS format and facilitating their analysis." ;
+    sc:featureList edam:operation_0224,
+        edam:operation_0335,
+        edam:operation_3436 ;
+    sc:isAccessibleForFree true ;
+    sc:license "BSD-3-Clause" ;
+    sc:name "MNE-BIDS" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://mne.tools/mne-bids/" .
+
 <https://bio.tools/mnhn-tree-tools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_3168,
@@ -308991,7 +321124,7 @@ MNDR (Mammalian ncRNA-Disease Repository) is a database that curated association
     sc:url "https://gitlab.in2p3.fr/mnhn-tools/mnhn-tree-tools" .
 
 <https://bio.tools/mni> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -309008,7 +321141,7 @@ MNDR (Mammalian ncRNA-Disease Repository) is a database that curated association
     sc:url "http://dibernardo.tigem.it/softwares/mode-of-action-by-network-inference-mni" .
 
 <https://bio.tools/mni-siscom> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_3384,
@@ -309028,7 +321161,7 @@ A simple command line tool and GUI for computing subtraction ictal SPECT coregis
     sc:url "https://github.com/jeremymoreau/mnisiscom" .
 
 <https://bio.tools/moable> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0602,
@@ -309050,8 +321183,27 @@ A simple command line tool and GUI for computing subtraction ictal SPECT coregis
         "Windows" ;
     sc:url "https://github.com/dmis-lab/moable" .
 
+<https://bio.tools/moai> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0634,
+        edam:topic_2640,
+        edam:topic_2830 ;
+    sc:citation <https://doi.org/10.1093/BIB/BBAB427>,
+        "pubmed:34661627" ;
+    sc:description "A multi-outcome interaction identification approach" ;
+    sc:featureList edam:operation_3503 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "MOAI" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://drive.google.com/file/d/1mBn3qK04Cr7Ds37FvjOcReTg_EWf8ggM/view> ;
+    sc:url "https://sites.google.com/view/moaitool/home" .
+
 <https://bio.tools/moaims> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_3169,
@@ -309072,10 +321224,10 @@ Methylated RNA immunoprecipitation sequencing (MeRIP-Seq) is a popular sequencin
 
 <https://bio.tools/moan> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Nucleic acid sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1371/journal.pcbi.1000562> ;
@@ -309092,7 +321244,7 @@ Methylated RNA immunoprecipitation sequencing (MeRIP-Seq) is a popular sequencin
     biotools:primaryContact "Eivind Valen" .
 
 <https://bio.tools/mob-suite> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0798,
@@ -309115,7 +321267,7 @@ Plasmids are mobile genetic elements (MGEs), which allow for rapid evolution and
     sc:url "https://github.com/phac-nml/mob-suite" .
 
 <https://bio.tools/mobi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2814 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btq537> ;
@@ -309133,18 +321285,17 @@ Plasmids are mobile genetic elements (MGEs), which allow for rapid evolution and
 
 <https://bio.tools/mobidb> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3021" ;
-            sc:name "UniProt accession" ;
-            sc:sameAs "http://edamontology.org/data_3021" ],
+            sc:additionalType "http://edamontology.org/data_2007" ;
+            sc:encodingFormat "http://edamontology.org/format_1964" ;
+            sc:name "UniProt keyword" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2007" ;
-            sc:name "UniProt keyword" ;
-            sc:sameAs "http://edamontology.org/data_2007" ] ;
+            sc:additionalType "http://edamontology.org/data_3021" ;
+            sc:name "UniProt accession" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:encodingFormat "http://edamontology.org/format_3464" ;
+            sc:name "Sequence features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web API",
         "Web application" ;
@@ -309177,14 +321328,14 @@ Plasmids are mobile genetic elements (MGEs), which allow for rapid evolution and
 
 <https://bio.tools/mobidb-lite> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:encodingFormat "http://edamontology.org/format_2548" ;
+            sc:name "Protein features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3510 ;
     sc:citation "pubmed:28453683" ;
@@ -309199,8 +321350,28 @@ Plasmids are mobile genetic elements (MGEs), which allow for rapid evolution and
     sc:url "http://protein.bio.unipd.it/mobidblite/" ;
     biotools:primaryContact "Silvio C.E. Tosatto" .
 
+<https://bio.tools/mobileog-db> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0623,
+        edam:topic_0798,
+        edam:topic_3174 ;
+    sc:citation <https://doi.org/10.1128/AEM.00991-22>,
+        "pubmed:36036594" ;
+    sc:description "A Manually Curated Database of Protein Families Mediating the Life Cycle of Bacterial Mobile Genetic Elements." ;
+    sc:featureList edam:operation_0427,
+        edam:operation_0578,
+        edam:operation_3482 ;
+    sc:isAccessibleForFree true ;
+    sc:name "mobileOG-db" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://fralinlifesci.vt.edu/content/dam/fralinlifesci_vt_edu/ciwars/mobileOG-db_UserGuidance_v1.6.pdf> ;
+    sc:url "http://mobileogdb.flsi.cloud.vt.edu/" .
+
 <https://bio.tools/mobileq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_3277,
@@ -309213,8 +321384,46 @@ mobileQ is a free, open-source web dashboard and Android smartphone application
     sc:name "mobileQ" ;
     sc:url "https://mobileQ.org" .
 
+<https://bio.tools/mobilesal> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_3382,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1109/TPAMI.2021.3134684>,
+        "pubmed:34898430" ;
+    sc:description "Extremely Efficient RGB-D Salient Object Detection." ;
+    sc:featureList edam:operation_3436,
+        edam:operation_3454,
+        edam:operation_3937 ;
+    sc:isAccessibleForFree true ;
+    sc:license "CC-BY-NC-SA-4.0" ;
+    sc:name "MobileSal" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/yuhuan-wu/mobilesal" .
+
+<https://bio.tools/mobilitytransformr> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0091,
+        edam:topic_0769,
+        edam:topic_3172 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC441>,
+        "pubmed:35781328" ;
+    sc:description "An R package for effective mobility transformation of CE-MS data." ;
+    sc:featureList edam:operation_3435 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Artistic-2.0" ;
+    sc:name "MobilityTransformR" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://bioconductor.org/packages/release/bioc/manuals/MobilityTransformR/man/MobilityTransformR.pdf> ;
+    sc:url "https://bioconductor.org/packages/MobilityTransformR" .
+
 <https://bio.tools/mobilomefinder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0749,
@@ -309241,7 +321450,7 @@ mobileQ is a free, open-source web dashboard and Android smartphone application
         "Zixin Deng" .
 
 <https://bio.tools/mobps-gc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0780,
@@ -309268,7 +321477,7 @@ More convenient input for Manuel Select (selection of cohorts for BVE - 03/11/20
     sc:url "http://www.mobps.de" .
 
 <https://bio.tools/mobster> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3168,
@@ -309283,7 +321492,7 @@ More convenient input for Manuel Select (selection of cohorts for BVE - 03/11/20
     biotools:primaryContact "Jayne Y Hehir-Kwa" .
 
 <https://bio.tools/mobster-r> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_2640,
@@ -309302,8 +321511,27 @@ Model-based tumour subclonal deconvolution.""" ;
     sc:name "mobster-R" ;
     sc:url "https://caravagnalab.github.io/mobster/" .
 
+<https://bio.tools/mocafe> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_2640,
+        edam:topic_3068,
+        edam:topic_3407 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC521>,
+        "pubmed:35876789" ;
+    sc:description "A comprehensive Python library for simulating cancer development with Phase Field Models." ;
+    sc:featureList edam:operation_2426,
+        edam:operation_3454 ;
+    sc:isAccessibleForFree true ;
+    sc:license "CC-BY-NC-4.0" ;
+    sc:name "Mocafe" ;
+    sc:operatingSystem "Linux",
+        "Windows" ;
+    sc:softwareHelp <https://biocomputingup.github.io/mocafe/build/html/index.html> ;
+    sc:url "https://github.com/BioComputingUP/mocafe" .
+
 <https://bio.tools/mocapy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2259,
@@ -309318,7 +321546,7 @@ Model-based tumour subclonal deconvolution.""" ;
     biotools:primaryContact "Martin Paluszewski" .
 
 <https://bio.tools/mocapy_plus_plus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0081 ;
     sc:citation <https://doi.org/10.1186/1471-2105-11-126> ;
@@ -309337,18 +321565,18 @@ Model-based tumour subclonal deconvolution.""" ;
 
 <https://bio.tools/mocat> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2975" ;
-            sc:name "Nucleic acid sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_2975" ] ;
+            sc:additionalType "http://edamontology.org/data_2975" ;
+            sc:encodingFormat "http://edamontology.org/format_1933" ;
+            sc:name "Nucleic acid sequence (raw)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2082" ;
-            sc:name "Matrix" ;
-            sc:sameAs "http://edamontology.org/data_2082" ],
+            sc:additionalType "http://edamontology.org/data_2082" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Matrix" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0925" ;
-            sc:name "Sequence assembly" ;
-            sc:sameAs "http://edamontology.org/data_0925" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0925" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence assembly" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3174 ;
     sc:citation "pubmed:23082188",
@@ -309372,7 +321600,7 @@ Model-based tumour subclonal deconvolution.""" ;
     biotools:primaryContact "Georg Zeller" .
 
 <https://bio.tools/mocca> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_3295,
@@ -309391,7 +321619,7 @@ Model-based tumour subclonal deconvolution.""" ;
     biotools:primaryContact <https://orcid.org/0000-0001-7171-2265> .
 
 <https://bio.tools/moccasin> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2259,
         edam:topic_3524 ;
@@ -309405,7 +321633,7 @@ Model-based tumour subclonal deconvolution.""" ;
     biotools:primaryContact "Michael Hucka," .
 
 <https://bio.tools/moccs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3125,
@@ -309422,7 +321650,7 @@ Model-based tumour subclonal deconvolution.""" ;
     biotools:primaryContact "Haruka Ozaki" .
 
 <https://bio.tools/mochiview> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0622,
@@ -309442,7 +321670,7 @@ Model-based tumour subclonal deconvolution.""" ;
     biotools:primaryContact "Alexander D. Johnson" .
 
 <https://bio.tools/mocsphaser> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2885,
         edam:topic_3053 ;
@@ -309458,7 +321686,7 @@ Model-based tumour subclonal deconvolution.""" ;
     biotools:primaryContact "Mamoru Kato" .
 
 <https://bio.tools/modEnrichr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
@@ -309481,7 +321709,7 @@ Model-based tumour subclonal deconvolution.""" ;
     biotools:primaryContact <https://orcid.org/0000-0002-6904-1017> .
 
 <https://bio.tools/mod_bio> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_3372 ;
@@ -309497,7 +321725,7 @@ Model-based tumour subclonal deconvolution.""" ;
     biotools:primaryContact "Pierre Lindenbaum" .
 
 <https://bio.tools/mod_tools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0659,
@@ -309518,7 +321746,7 @@ Model-based tumour subclonal deconvolution.""" ;
     biotools:primaryContact "Giulio Pavesi" .
 
 <https://bio.tools/moda> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -309537,7 +321765,7 @@ Model-based tumour subclonal deconvolution.""" ;
     biotools:primaryContact "Dong Li" .
 
 <https://bio.tools/modb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0621,
@@ -309561,34 +321789,30 @@ Model-based tumour subclonal deconvolution.""" ;
 
 <https://bio.tools/modbase> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1106" ;
-            sc:name "dbSNP ID" ;
-            sc:sameAs "http://edamontology.org/data_1106" ],
+            sc:additionalType "http://edamontology.org/data_3021" ;
+            sc:name "UniProt accession" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3021" ;
-            sc:name "UniProt accession" ;
-            sc:sameAs "http://edamontology.org/data_3021" ],
+            sc:additionalType "http://edamontology.org/data_1106" ;
+            sc:name "dbSNP ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3021" ;
-            sc:name "UniProt accession" ;
-            sc:sameAs "http://edamontology.org/data_3021" ],
+            sc:additionalType "http://edamontology.org/data_3021" ;
+            sc:name "UniProt accession" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3021" ;
-            sc:name "UniProt accession" ;
-            sc:sameAs "http://edamontology.org/data_3021" ] ;
+            sc:additionalType "http://edamontology.org/data_3021" ;
+            sc:name "UniProt accession" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1537" ;
-            sc:name "Protein structure report" ;
-            sc:sameAs "http://edamontology.org/data_1537" ],
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Sequence variations" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ],
+            sc:additionalType "http://edamontology.org/data_1537" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Protein structure report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Sequence variations" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_2814 ;
     sc:citation <https://doi.org/10.1093/nar/gkt1144> ;
@@ -309602,7 +321826,7 @@ Model-based tumour subclonal deconvolution.""" ;
     sc:url "http://modbase.compbio.ucsf.edu/modbase-cgi/index.cgi" .
 
 <https://bio.tools/mode-task> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0176,
         edam:topic_0602,
@@ -309619,14 +321843,12 @@ Model-based tumour subclonal deconvolution.""" ;
 
 <https://bio.tools/model> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0842" ;
-            sc:name "Identifier" ;
-            sc:sameAs "http://edamontology.org/data_0842" ] ;
+            sc:additionalType "http://edamontology.org/data_0842" ;
+            sc:name "Identifier" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2080" ;
-            sc:name "Database search results" ;
-            sc:sameAs "http://edamontology.org/data_2080" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2080" ;
+            sc:name "Database search results" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0176 ;
     sc:citation <https://doi.org/10.1016/j.str.2010.07.013> ;
@@ -309643,7 +321865,7 @@ Model-based tumour subclonal deconvolution.""" ;
     biotools:primaryContact "Institute for Research in Biomedicine Barcelona" .
 
 <https://bio.tools/model-debugger-simbiology> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344 ;
@@ -309659,7 +321881,7 @@ Model-based tumour subclonal deconvolution.""" ;
     biotools:primaryContact "Florian Augustin" .
 
 <https://bio.tools/model-m> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_3305,
         edam:topic_3318,
@@ -309675,7 +321897,7 @@ Model-based tumour subclonal deconvolution.""" ;
     biotools:primaryContact <https://orcid.org/0000-0003-2364-5357> .
 
 <https://bio.tools/model-vesicle-removal-cryoem> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3318,
@@ -309695,7 +321917,7 @@ Model-based tumour subclonal deconvolution.""" ;
     biotools:primaryContact "Katrine Hommelhoff Jensen" .
 
 <https://bio.tools/model_dis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0218,
         edam:topic_0602,
@@ -309712,7 +321934,7 @@ Model-based tumour subclonal deconvolution.""" ;
     sc:url "https://github.com/dewancse/model-discovery-tool" .
 
 <https://bio.tools/modelbase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2259,
@@ -309733,7 +321955,7 @@ Model-based tumour subclonal deconvolution.""" ;
     biotools:primaryContact <https://orcid.org/0000-0003-0882-6088> .
 
 <https://bio.tools/modelbuildr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3518 ;
@@ -309749,7 +321971,7 @@ Model-based tumour subclonal deconvolution.""" ;
     sc:url "http://github.com/mknoll/modelBuildR" .
 
 <https://bio.tools/modelestimator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0081 ;
@@ -309764,8 +321986,26 @@ Model-based tumour subclonal deconvolution.""" ;
     sc:url "http://www.csc.kth.se/~arve/code/modelestimator/" ;
     biotools:primaryContact "Lars Arvestad" .
 
+<https://bio.tools/modelgenerator> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0078,
+        edam:topic_0154 ;
+    sc:citation <https://doi.org/10.1186/1471-2148-6-29>,
+        "pmcid:PMC1435933",
+        "pubmed:16563161" ;
+    sc:description "Amino acid and nucleotide substitution model selection" ;
+    sc:featureList edam:operation_2423 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "modelgenerator" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://mcinerneylab.com/software/modelgenerator/" .
+
 <https://bio.tools/modeling-lungcancer-diagnosis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3070,
@@ -309781,12 +322021,23 @@ Model-based tumour subclonal deconvolution.""" ;
     biotools:primaryContact "Paola Favaretto" .
 
 <https://bio.tools/modeller> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_2275,
         edam:topic_2814 ;
-    sc:citation "pubmed:24573470" ;
+    sc:citation <https://doi.org/10.1002/cpbi.3>,
+        <https://doi.org/10.1006/jmbi.1993.1626>,
+        <https://doi.org/10.1007/978-1-4939-0366-5_1>,
+        <https://doi.org/10.1110/ps.9.9.1753>,
+        <https://doi.org/10.1146/annurev.biophys.29.1.291>,
+        "pmcid:PMC2144714",
+        "pmcid:PMC5031415",
+        "pubmed:10940251",
+        "pubmed:11045621",
+        "pubmed:24573470",
+        "pubmed:27322406",
+        "pubmed:8254673" ;
     sc:description "Used for homology or comparative modeling of protein three-dimensional structures. The user provides an alignment of a sequence to be modeled with known related structures and MODELLER automatically calculates a model containing all non-hydrogen atoms." ;
     sc:featureList edam:operation_0477 ;
     sc:name "MODELLER" ;
@@ -309799,7 +322050,7 @@ Model-based tumour subclonal deconvolution.""" ;
     biotools:primaryContact "Modeller Support" .
 
 <https://bio.tools/modelmatcher> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0621,
@@ -309816,7 +322067,7 @@ Model-based tumour subclonal deconvolution.""" ;
     sc:url "https://www.modelmatcher.net/" .
 
 <https://bio.tools/models-genesis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3067,
         edam:topic_3384,
@@ -309836,7 +322087,7 @@ We have built a set of pre-trained models called Generic Autodidactic Models, ni
     sc:url "https://github.com/MrGiovanni/ModelsGenesis" .
 
 <https://bio.tools/modelseed> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0780,
@@ -309855,7 +322106,7 @@ The ModelSEED is a resource for the reconstruction, exploration, comparison, and
     sc:url "https://modelseed.org" .
 
 <https://bio.tools/modeltest> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0199,
@@ -309869,7 +322120,7 @@ The ModelSEED is a resource for the reconstruction, exploration, comparison, and
     sc:url "http://darwin.uvigo.es/software/modeltest_server.html" .
 
 <https://bio.tools/modent> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0602,
@@ -309885,7 +322136,7 @@ The ModelSEED is a resource for the reconstruction, exploration, comparison, and
     biotools:primaryContact "Guy Karlebach" .
 
 <https://bio.tools/moder2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_2269,
@@ -309905,7 +322156,7 @@ MODER2 is implemented in C++ and has been tested in Linux platform. As the only
     sc:url "https://github.com/jttoivon/moder2" .
 
 <https://bio.tools/moderna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0097 ;
@@ -309923,7 +322174,7 @@ MODER2 is implemented in C++ and has been tested in Linux platform. As the only
     sc:url "http://genesilico.pl/moderna/" .
 
 <https://bio.tools/modest> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0130,
         edam:topic_0154,
@@ -309947,7 +322198,7 @@ MODER2 is implemented in C++ and has been tested in Linux platform. As the only
     biotools:primaryContact "MODDEST Support" .
 
 <https://bio.tools/modexplorer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0623,
         edam:topic_2275 ;
@@ -309962,7 +322213,7 @@ MODER2 is implemented in C++ and has been tested in Linux platform. As the only
     sc:url "http://modorama.org/modexplorer/index/" .
 
 <https://bio.tools/modflex> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2275,
@@ -309979,14 +322230,14 @@ MODER2 is implemented in C++ and has been tested in Linux platform. As the only
 
 <https://bio.tools/modfold> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0950" ;
-            sc:name "Mathematical model" ;
-            sc:sameAs "http://edamontology.org/data_0950" ],
+            sc:additionalType "http://edamontology.org/data_2974" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Protein sequence (raw)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2974" ;
-            sc:name "Protein sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_2974" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0950" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Mathematical model" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0130 ;
@@ -310003,7 +322254,7 @@ MODER2 is implemented in C++ and has been tested in Linux platform. As the only
     biotools:primaryContact "Dr Liam J. McGuffin" .
 
 <https://bio.tools/modfold4> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -310025,7 +322276,7 @@ MODER2 is implemented in C++ and has been tested in Linux platform. As the only
     biotools:primaryContact "Dr Liam J. McGuffin" .
 
 <https://bio.tools/modi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0154,
@@ -310042,7 +322293,7 @@ MODER2 is implemented in C++ and has been tested in Linux platform. As the only
     sc:url "http://prix.uos.ac.kr/research.jsp" .
 
 <https://bio.tools/modifier> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3170,
@@ -310062,34 +322313,34 @@ R package for robust disease module identification.""" ;
 
 <https://bio.tools/modifygenomiccoordinates> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ],
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
+            sc:name "Sequence trace" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_3003" ;
+            sc:name "Annotation track" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2305" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1975" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2306" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1975" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3071 ;
@@ -310108,14 +322359,14 @@ R package for robust disease module identification.""" ;
 
 <https://bio.tools/modifysequencelist> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0078,
@@ -310135,7 +322386,7 @@ R package for robust disease module identification.""" ;
     biotools:primaryContact "Galaxy Support Team" .
 
 <https://bio.tools/modil> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_2533,
@@ -310154,8 +322405,26 @@ R package for robust disease module identification.""" ;
     sc:url "http://compbio.cs.toronto.edu/modil/" ;
     biotools:primaryContact "MoDIL support" .
 
+<https://bio.tools/modinterv> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3299,
+        edam:topic_3305,
+        edam:topic_3315 ;
+    sc:citation <https://doi.org/10.1016/J.SIMPA.2022.100409>,
+        "pmcid:PMC9375249",
+        "pubmed:35990010" ;
+    sc:description "An automated online software for modeling epidemics." ;
+    sc:featureList edam:operation_2426 ;
+    sc:isAccessibleForFree true ;
+    sc:name "ModInterv" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://fisica.ufpr.br/modinterv" .
+
 <https://bio.tools/modlamp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0123,
@@ -310174,10 +322443,10 @@ R package for robust disease module identification.""" ;
 
 <https://bio.tools/modlink> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2974" ;
-            sc:name "Protein sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_2974" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2974" ;
+            sc:encodingFormat "http://edamontology.org/format_1218" ;
+            sc:name "Protein sequence (raw)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API" ;
     sc:applicationSubCategory edam:topic_0736 ;
     sc:author <http://orcid.org/0000-0002-0128-8363>,
@@ -310198,7 +322467,7 @@ R package for robust disease module identification.""" ;
     sc:url "http://sbi.imim.es/modlink/" .
 
 <https://bio.tools/modmap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2259 ;
@@ -310214,7 +322483,7 @@ R package for robust disease module identification.""" ;
     biotools:primaryContact "David Amar" .
 
 <https://bio.tools/modmatcher> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3391 ;
     sc:citation <https://doi.org/10.1371/journal.pcbi.1003790>,
@@ -310229,7 +322498,7 @@ R package for robust disease module identification.""" ;
     sc:url "http://research.mssm.edu/integrative-network-biology/Software.html" .
 
 <https://bio.tools/modomics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web API" ;
     sc:applicationSubCategory edam:topic_0602,
@@ -310249,18 +322518,17 @@ R package for robust disease module identification.""" ;
 
 <https://bio.tools/modorama> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ],
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0893" ;
-            sc:name "Sequence-structure alignment" ;
-            sc:sameAs "http://edamontology.org/data_0893" ],
+            sc:additionalType "http://edamontology.org/data_0893" ;
+            sc:name "Sequence-structure alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein structure" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/bts070>,
@@ -310280,7 +322548,7 @@ R package for robust disease module identification.""" ;
     biotools:primaryContact "Jan Kosinski" .
 
 <https://bio.tools/modpep> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_2258,
@@ -310297,7 +322565,7 @@ R package for robust disease module identification.""" ;
     biotools:primaryContact "Sheng-You Huang" .
 
 <https://bio.tools/modpepint> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0602,
@@ -310314,7 +322582,7 @@ R package for robust disease module identification.""" ;
     biotools:primaryContact "Rolf Backofen" .
 
 <https://bio.tools/modphred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0654,
@@ -310334,7 +322602,7 @@ R package for robust disease module identification.""" ;
         <https://orcid.org/0000-0003-0790-067X> .
 
 <https://bio.tools/modpred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0601,
@@ -310351,7 +322619,7 @@ R package for robust disease module identification.""" ;
     biotools:primaryContact "Pejaver, V" .
 
 <https://bio.tools/modpropep> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0121,
@@ -310369,7 +322637,7 @@ R package for robust disease module identification.""" ;
     sc:url "http://www.nii.res.in/~narendra/PROT_PEP_INTERACTION/index.html" .
 
 <https://bio.tools/modrefiner> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_2275,
@@ -310384,7 +322652,7 @@ R package for robust disease module identification.""" ;
     sc:url "http://zhanglab.ccmb.med.umich.edu/ModRefiner/" .
 
 <https://bio.tools/modsara> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0654,
@@ -310401,7 +322669,7 @@ R package for robust disease module identification.""" ;
     biotools:primaryContact "Feifei Xiao" .
 
 <https://bio.tools/modsara-variant> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3056,
         edam:topic_3293 ;
@@ -310421,7 +322689,7 @@ R package for robust disease module identification.""" ;
     biotools:primaryContact "Heping Zhang" .
 
 <https://bio.tools/modsubnetbiomident> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -310443,7 +322711,7 @@ R package for robust disease module identification.""" ;
     biotools:primaryContact "Igor Jurisica" .
 
 <https://bio.tools/modtect> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_0749,
@@ -310466,7 +322734,7 @@ R package for robust disease module identification.""" ;
     sc:url "https://github.com/ktan8/ModTect" .
 
 <https://bio.tools/modularboost> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0602,
@@ -310488,14 +322756,12 @@ R package for robust disease module identification.""" ;
 
 <https://bio.tools/moduledigger> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ] ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:name "Nucleic acid sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2070" ;
-            sc:name "Sequence motif (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_2070" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2070" ;
+            sc:name "Sequence motif (nucleic acid)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3511 ;
     sc:citation <https://doi.org/10.1186/1471-2105-10-S1-S30> ;
@@ -310509,7 +322775,7 @@ R package for robust disease module identification.""" ;
     sc:url "http://bioinformatics.intec.ugent.be/kmarchal/Supplementary_Information_Sun_2009_ModuleDigger/Index.html" .
 
 <https://bio.tools/modulemaster> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0749,
@@ -310528,7 +322794,7 @@ R package for robust disease module identification.""" ;
         "Klaus Harter" .
 
 <https://bio.tools/moduleorganizer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1186/1471-2105-11-474> ;
@@ -310543,7 +322809,7 @@ R package for robust disease module identification.""" ;
     sc:url "http://www.genouest.org/spip.php?page=outils&id_rubrique=113&lang=en" .
 
 <https://bio.tools/modulesearch> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0128,
@@ -310558,8 +322824,30 @@ R package for robust disease module identification.""" ;
     sc:softwareHelp <http://bclab.inha.ac.kr/ModuleSearch/> ;
     sc:url "http://bclab.inha.ac.kr/ModuleSearch/" .
 
+<https://bio.tools/moet> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0089,
+        edam:topic_0602,
+        edam:topic_0621,
+        edam:topic_0622,
+        edam:topic_3500 ;
+    sc:citation <https://doi.org/10.1093/GENETICS/IYAC005>,
+        "pmcid:PMC8982048",
+        "pubmed:35380657" ;
+    sc:description "A web-based gene set enrichment tool at the Rat Genome Database for multiontology and multispecies analyses." ;
+    sc:featureList edam:operation_2436,
+        edam:operation_3559,
+        edam:operation_3672 ;
+    sc:isAccessibleForFree true ;
+    sc:name "MOET" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://rgd.mcw.edu/rgdweb/enrichment/start.html" .
+
 <https://bio.tools/mofa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3306,
         edam:topic_3336,
@@ -310577,14 +322865,12 @@ R package for robust disease module identification.""" ;
 
 <https://bio.tools/moff> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ] ;
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:name "Mass spectrometry data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2071" ;
-            sc:name "Sequence motif (protein)" ;
-            sc:sameAs "http://edamontology.org/data_2071" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2071" ;
+            sc:name "Sequence motif (protein)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121 ;
     sc:citation <https://doi.org/10.1038/nmeth.4075>,
@@ -310602,7 +322888,7 @@ R package for robust disease module identification.""" ;
     biotools:primaryContact "Lennart Martens" .
 
 <https://bio.tools/mofi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:citation <https://doi.org/10.1021/acs.analchem.8b00019>,
         "pubmed:29624378" ;
@@ -310617,7 +322903,7 @@ R package for robust disease module identification.""" ;
     biotools:primaryContact <https://orcid.org/0000-0002-7350-4045> .
 
 <https://bio.tools/mog> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2640,
@@ -310639,7 +322925,7 @@ MetaOmGraph (MOG) is a Java software to interactively explore and visualize larg
     sc:url "https://github.com/urmi-21/MetaOmGraph/" .
 
 <https://bio.tools/mogamun> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0203,
@@ -310658,7 +322944,7 @@ MOGAMUN is a Multi Objective Genetic Algorithm to find active modules (i.e., hig
     sc:url "https://github.com/elvanov/MOGAMUN" .
 
 <https://bio.tools/mogen> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0122,
         edam:topic_0804,
@@ -310674,26 +322960,26 @@ MOGAMUN is a Multi Objective Genetic Algorithm to find active modules (i.e., hig
 
 <https://bio.tools/mogsa> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Gene expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ],
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "Gene expression data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3115" ;
-            sc:name "Microarray metadata" ;
-            sc:sameAs "http://edamontology.org/data_3115" ] ;
+            sc:additionalType "http://edamontology.org/data_3115" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "Microarray metadata" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1772" ;
-            sc:name "Score" ;
-            sc:sameAs "http://edamontology.org/data_1772" ],
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "Plot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ],
+            sc:additionalType "http://edamontology.org/data_1636" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "Heat map" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1636" ;
-            sc:name "Heat map" ;
-            sc:sameAs "http://edamontology.org/data_1636" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1772" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "Score" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -310715,7 +323001,7 @@ MOGAMUN is a Multi Objective Genetic Algorithm to find active modules (i.e., hig
     biotools:primaryContact "Chen Meng" .
 
 <https://bio.tools/moiety_modeling> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0593,
@@ -310749,7 +323035,7 @@ Welcome to moiety_modeling’s documentation!¶.
     sc:url "https://figshare.com/articles/moiety_modeling_framework/7886135" .
 
 <https://bio.tools/moirai> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3572 ;
@@ -310765,7 +323051,7 @@ Welcome to moiety_modeling’s documentation!¶.
     sc:url "http://sourceforge.net/projects/moirai/" .
 
 <https://bio.tools/moirnaifold> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0203,
@@ -310781,7 +323067,7 @@ Welcome to moiety_modeling’s documentation!¶.
     biotools:primaryContact <https://orcid.org/0000-0002-0438-9557> .
 
 <https://bio.tools/moitf-em> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0781,
         edam:topic_2275,
@@ -310795,8 +323081,31 @@ Welcome to moiety_modeling’s documentation!¶.
     sc:url "http://ai.stanford.edu/~mitul/motifEM/" ;
     biotools:primaryContact "Mitul Saha" .
 
+<https://bio.tools/mojitoo> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0080,
+        edam:topic_0121,
+        edam:topic_3173,
+        edam:topic_3303,
+        edam:topic_3308 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC220>,
+        "pmcid:PMC9235504",
+        "pubmed:35758807" ;
+    sc:description "A fast and universal method for integration of multimodal single-cell data." ;
+    sc:featureList edam:operation_3435,
+        edam:operation_3891,
+        edam:operation_3907 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "MOJITOO" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/CostaLab/MOJITOO" .
+
 <https://bio.tools/mokapot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -310815,7 +323124,7 @@ Welcome to moiety_modeling’s documentation!¶.
     sc:url "https://github.com/wfondrie/mokapot" .
 
 <https://bio.tools/mol2context-vec> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -310837,7 +323146,7 @@ Welcome to moiety_modeling’s documentation!¶.
     sc:url "https://github.com/lol88/Mol2Context-vec" .
 
 <https://bio.tools/molaical> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0209,
@@ -310857,7 +323166,7 @@ MolAICal is a drug design software combined by artificial intelligence and class
     sc:url "https://molaical.github.io" .
 
 <https://bio.tools/molaxis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0130,
         edam:topic_0166,
@@ -310880,7 +323189,7 @@ MolAICal is a drug design software combined by artificial intelligence and class
     biotools:primaryContact "Eitan Yaffe" .
 
 <https://bio.tools/molcontroller> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0154,
@@ -310897,8 +323206,30 @@ Visual Molecular Dynamics (VMD) is one of the most widely used molecular graphic
     sc:name "Molcontroller" ;
     sc:url "https://github.com/ChenchenWu-hub/Molcontroller" .
 
+<https://bio.tools/moldata> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_3324,
+        edam:topic_3336,
+        edam:topic_3407,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.21203/RS.3.RS-968557/V2> ;
+    sc:description "Molecular Benchmark for Disease and Target Based Machine Learning." ;
+    sc:featureList edam:operation_3216,
+        edam:operation_3359,
+        edam:operation_3937,
+        edam:operation_3938 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "MolData" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/Transilico/MolData" .
+
 <https://bio.tools/molden> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0154,
@@ -310916,7 +323247,7 @@ Visual Molecular Dynamics (VMD) is one of the most widely used molecular graphic
     biotools:primaryContact "G.Schaftenaar" .
 
 <https://bio.tools/moldiscovery> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -310937,22 +323268,22 @@ MolDiscovery is a mass spectral database search method that improves both effici
 
 <https://bio.tools/mole> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ],
+            sc:additionalType "http://edamontology.org/data_1127" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "PDB ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1127" ;
-            sc:name "PDB ID" ;
-            sc:sameAs "http://edamontology.org/data_1127" ] ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1477" ;
+            sc:name "Protein structure" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ],
+            sc:additionalType "http://edamontology.org/data_2878" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Protein structural motif" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2878" ;
-            sc:name "Protein structural motif" ;
-            sc:sameAs "http://edamontology.org/data_2878" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein structure" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application",
         "Web application" ;
@@ -310991,22 +323322,22 @@ MolDiscovery is a mass spectral database search method that improves both effici
 
 <https://bio.tools/mole_pymol_plugin> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ],
+            sc:additionalType "http://edamontology.org/data_1127" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "PDB ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1127" ;
-            sc:name "PDB ID" ;
-            sc:sameAs "http://edamontology.org/data_1127" ] ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein structure" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ],
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1475" ;
+            sc:name "Protein structure" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1539" ;
-            sc:name "Protein structural quality report" ;
-            sc:sameAs "http://edamontology.org/data_1539" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1539" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Protein structural quality report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0123,
         edam:topic_0128,
@@ -311039,7 +323370,7 @@ MolDiscovery is a mass spectral database search method that improves both effici
         "Primary Contact" .
 
 <https://bio.tools/molecular_anatomy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0209,
         edam:topic_0602,
@@ -311062,7 +323393,7 @@ MolDiscovery is a mass spectral database search method that improves both effici
     sc:url "https://ma.exscalate.eu" .
 
 <https://bio.tools/molecular_weight_calculator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -311075,7 +323406,7 @@ MolDiscovery is a mass spectral database search method that improves both effici
     sc:url "http://omics.pnl.gov/software/molecular-weight-calculator" .
 
 <https://bio.tools/molecule-viewer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3047,
         edam:topic_3318,
@@ -311094,22 +323425,22 @@ MolDiscovery is a mass spectral database search method that improves both effici
 
 <https://bio.tools/moleonline> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ],
+            sc:additionalType "http://edamontology.org/data_1127" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "PDB ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1127" ;
-            sc:name "PDB ID" ;
-            sc:sameAs "http://edamontology.org/data_1127" ] ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1477" ;
+            sc:name "Protein structure" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ],
+            sc:additionalType "http://edamontology.org/data_1539" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Protein structural quality report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1539" ;
-            sc:name "Protein structural quality report" ;
-            sc:sameAs "http://edamontology.org/data_1539" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1475" ;
+            sc:name "Protein structure" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0123,
         edam:topic_0128,
@@ -311163,7 +323494,7 @@ MolDiscovery is a mass spectral database search method that improves both effici
         "Primary contact" .
 
 <https://bio.tools/molfit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0128,
@@ -311177,7 +323508,7 @@ MolDiscovery is a mass spectral database search method that improves both effici
     sc:url "http://www.weizmann.ac.il/Chemical_Research_Support/molfit/" .
 
 <https://bio.tools/molgenis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_3071,
@@ -311202,7 +323533,7 @@ MolDiscovery is a mass spectral database search method that improves both effici
     biotools:primaryContact "Morris Swertz" .
 
 <https://bio.tools/molgenis-impute> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0654,
@@ -311220,7 +323551,7 @@ MolDiscovery is a mass spectral database search method that improves both effici
     biotools:primaryContact "Alexandros Kanterakis" .
 
 <https://bio.tools/molgenis_compute> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1186/s13104-015-1309-3> ;
@@ -311238,7 +323569,7 @@ MolDiscovery is a mass spectral database search method that improves both effici
     biotools:primaryContact "Morris Swertz" .
 
 <https://bio.tools/molgpka> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3047,
@@ -311259,8 +323590,26 @@ MolDiscovery is a mass spectral database search method that improves both effici
         <https://xundrug.cn/molgpka/tutorial> ;
     sc:url "https://xundrug.cn/molgpka" .
 
+<https://bio.tools/molhyb> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0078,
+        edam:topic_0154,
+        edam:topic_0209 ;
+    sc:citation <https://doi.org/10.1021/ACS.JCIM.2C00443>,
+        "pubmed:35695435" ;
+    sc:description "A Web Server for Structure-Based Drug Design by Molecular Hybridization." ;
+    sc:featureList edam:operation_0482,
+        edam:operation_4009 ;
+    sc:isAccessibleForFree true ;
+    sc:name "MolHyb" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://molhyb.xundrug.cn/" .
+
 <https://bio.tools/molligen> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0797,
         edam:topic_3301 ;
@@ -311280,13 +323629,14 @@ MolDiscovery is a mass spectral database search method that improves both effici
         "Windows" ;
     sc:provider "Centre de Bioinformatique de Bordeaux (CBiB)",
         "u-bordeaux.fr" ;
-    sc:softwareHelp <http://services.cbib.u-bordeaux2.fr/molligen/>,
-        <http://services.cbib.u-bordeaux2.fr/molligen/CREDITS/data/MolliGen_Tutorial_2012.pdf> ;
-    sc:url "http://services.cbib.u-bordeaux2.fr/molligen/" ;
+    sc:softwareHelp <http://services.cbib.u-bordeaux.fr/molligen/CREDITS/data/MolliGen_Tutorial_2012.pdf>,
+        <https://services.cbib.u-bordeaux.fr/molligen4/> ;
+    sc:softwareVersion "4" ;
+    sc:url "https://services.cbib.u-bordeaux.fr/molligen4/" ;
     biotools:primaryContact "Aurélien Barré" .
 
 <https://bio.tools/molloc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0097,
@@ -311303,7 +323653,7 @@ MolDiscovery is a mass spectral database search method that improves both effici
     sc:url "http://bcb.dei.unipd.it/MolLoc" .
 
 <https://bio.tools/molluscdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Plug-in" ;
     sc:applicationSubCategory edam:topic_0084,
@@ -311326,14 +323676,12 @@ MolDiscovery is a mass spectral database search method that improves both effici
 
 <https://bio.tools/molmeth> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0968" ;
-            sc:name "Keyword" ;
-            sc:sameAs "http://edamontology.org/data_0968" ] ;
+            sc:additionalType "http://edamontology.org/data_0968" ;
+            sc:name "Keyword" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2337" ;
-            sc:name "Resource metadata" ;
-            sc:sameAs "http://edamontology.org/data_2337" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2337" ;
+            sc:name "Resource metadata" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_3361 ;
     sc:citation <https://doi.org/10.1016/j.nbt.2012.05.019> ;
@@ -311348,7 +323696,7 @@ MolDiscovery is a mass spectral database search method that improves both effici
     sc:url "http://www.molmeth.org/" .
 
 <https://bio.tools/molmovdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0081,
@@ -311369,8 +323717,29 @@ MolDiscovery is a mass spectral database search method that improves both effici
     sc:url "http://molmovdb.org/" ;
     biotools:primaryContact "Bo Wang" .
 
+<https://bio.tools/molormer> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0605,
+        edam:topic_3336,
+        edam:topic_3375,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1093/BIB/BBAC296>,
+        "pubmed:35849817" ;
+    sc:description "A lightweight self-attention-based method focused on spatial structure of molecular graph for drug-drug interactions prediction." ;
+    sc:featureList edam:operation_3927,
+        edam:operation_4009 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "Molormer" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/IsXudongZhang/Molormer" .
+
 <https://bio.tools/molpov> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_2275,
@@ -311384,17 +323753,45 @@ MolDiscovery is a mass spectral database search method that improves both effici
     sc:softwareVersion "2.1.0" ;
     sc:url "https://richardson.chem.ufl.edu/software/molpov-molecular-images/" .
 
+<https://bio.tools/molpredictx> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2301" ;
+            sc:name "SMILES string" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1463" ;
+            sc:name "Small molecule structure" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3047,
+        edam:topic_3373,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1002/MINF.202200133>,
+        "pubmed:35961924" ;
+    sc:description "MolPredictX is a web tool that allows the scientific community to obtain biological activities predictions of molecules. MolPredictX manages predictive models already published in indexed scientific articles and makes predictions of molecules the researcher wishes to investigate. It informs the qualitative prediction of the molecules, as well as a probability quantitative value of activity. MolPredictX also provides the possibility for the researcher to download predictions in the .csv format" ;
+    sc:featureList edam:operation_0224,
+        edam:operation_3461,
+        edam:operation_3799 ;
+    sc:isAccessibleForFree true ;
+    sc:name "MolPredictX" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://www.molpredictx.ufpb.br/" .
+
 <https://bio.tools/molprobity> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0082,
         edam:topic_0097,
         edam:topic_0157,
         edam:topic_0166 ;
-    sc:citation "pubmed:12557186",
+    sc:citation <https://doi.org/10.1107/S0907444909042073>,
+        "pmcid:PMC2803126",
+        "pubmed:12557186",
         "pubmed:15215462",
-        "pubmed:17452350" ;
+        "pubmed:17452350",
+        "pubmed:20057044" ;
     sc:description "MolProbity is a structure validation web service for diagnosing problems in 3D models of proteins, nucleic acids or complexes.  It adds and optimizes H atoms (correcting 180° flipped Asn/Gln/His sidechains), and then calculates global and local validation for all-atom contacts (steric clashes, H-bonds & vdW), covalent geometry, and conformation (Ramachandran & rotamers for protein, ribose puckers & suite conformers for RNA).  Results are displayed online as 3D graphics and sortable charts." ;
     sc:featureList edam:operation_0249,
         edam:operation_0321,
@@ -311410,7 +323807,7 @@ MolDiscovery is a mass spectral database search method that improves both effici
     biotools:primaryContact "Contact Form" .
 
 <https://bio.tools/molprobity_3d> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0154,
@@ -311431,7 +323828,7 @@ CCTBX, which powers this version of MolProbity (4.2), requires stricter adherenc
     sc:url "http://molprobity.manchester.ac.uk" .
 
 <https://bio.tools/molrep> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_1317,
@@ -311452,7 +323849,7 @@ CCTBX, which powers this version of MolProbity (4.2), requires stricter adherenc
     sc:url "http://www.ccp4.ac.uk/html/molrep.html" .
 
 <https://bio.tools/molrepp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2275,
         edam:topic_3314,
@@ -311470,14 +323867,14 @@ MolRep is a Python package for fairly measuring algorithmic progress on chemical
 
 <https://bio.tools/molstar> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ] ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1477" ;
+            sc:name "Protein structure" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3603" ;
+            sc:name "Image" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3307 ;
     sc:citation <https://doi.org/10.2312/molva.20181103> ;
@@ -311493,7 +323890,7 @@ MolRep is a Python package for fairly measuring algorithmic progress on chemical
     sc:url "https://molstar.org/" .
 
 <https://bio.tools/molstar-viewer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0593,
@@ -311513,7 +323910,7 @@ MolRep is a Python package for fairly measuring algorithmic progress on chemical
     biotools:primaryContact <https://orcid.org/0000-0002-0893-5551> .
 
 <https://bio.tools/molsurfer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_2275,
@@ -311532,7 +323929,7 @@ MolRep is a Python package for fairly measuring algorithmic progress on chemical
         "Rebecca Wade" .
 
 <https://bio.tools/moltrans> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0602,
@@ -311551,7 +323948,7 @@ Drug target interaction (DTI) prediction is a foundational task for in-silico dr
     sc:url "https://github.com/kexinhuang12345/moltrans" .
 
 <https://bio.tools/molup> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description """molUP is a free VMD extension that allows you to open and save Gaussian files. This tool can be used to analyze results from Gaussian output files and prepare Gaussian input files.
 
 molUP provides also a set of tools to adjust bond lengths, rotate angles and dihedral angles directly on VMD. With molUP, it is possible to add and remove atoms or molecules using VMD.""" ;
@@ -311560,7 +323957,7 @@ molUP provides also a set of tools to adjust bond lengths, rotate angles and dih
     sc:url "https://biosim.pt/molup/" .
 
 <https://bio.tools/molywood> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0176,
         edam:topic_0769,
@@ -311582,7 +323979,7 @@ Specifically, molywood automatizes the most tedious steps in generation of these
     sc:url "http://gitlab.com/KomBioMol/molywood" .
 
 <https://bio.tools/mom> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622 ;
     sc:citation "pubmed:19228804" ;
@@ -311597,7 +323994,7 @@ Specifically, molywood automatizes the most tedious steps in generation of these
     biotools:primaryContact "H. L. Eaves" .
 
 <https://bio.tools/moma> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Plug-in" ;
     sc:applicationSubCategory edam:topic_0204,
@@ -311616,7 +324013,7 @@ Specifically, molywood automatizes the most tedious steps in generation of these
     biotools:primaryContact "Florian Jug" .
 
 <https://bio.tools/moma-ligpath> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0166,
@@ -311638,10 +324035,10 @@ Specifically, molywood automatizes the most tedious steps in generation of these
 
 <https://bio.tools/moma-loopsampler> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2085" ;
-            sc:name "Structure report" ;
-            sc:sameAs "http://edamontology.org/data_2085" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2085" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Structure report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0176,
@@ -311660,7 +324057,7 @@ Specifically, molywood automatizes the most tedious steps in generation of these
     sc:url "https://moma.laas.fr/applications/LoopSampler/" .
 
 <https://bio.tools/momba> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_3315,
         edam:topic_3372,
@@ -311678,7 +324075,7 @@ Specifically, molywood automatizes the most tedious steps in generation of these
     biotools:primaryContact <https://orcid.org/0000-0003-2551-2814> .
 
 <https://bio.tools/momn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3382 ;
@@ -311694,7 +324091,7 @@ Bilinear pooling achieves great success in fine-grained visual recognition (FGVC
     sc:url "https://github.com/mboboGO/MOMN" .
 
 <https://bio.tools/monaco> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0102,
@@ -311709,7 +324106,7 @@ Bilinear pooling achieves great success in fine-grained visual recognition (FGVC
     sc:url "https://github.com/bjyoontamu/MONACO" .
 
 <https://bio.tools/monago> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0089,
@@ -311726,7 +324123,7 @@ Bilinear pooling achieves great success in fine-grained visual recognition (FGVC
     sc:url "http://monago.erc.monash.edu/" .
 
 <https://bio.tools/monas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0625,
         edam:topic_0632,
@@ -311746,7 +324143,7 @@ Bilinear pooling achieves great success in fine-grained visual recognition (FGVC
     sc:url "https://github.com/ItokawaK/MoNaS" .
 
 <https://bio.tools/monet-rna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3170,
@@ -311766,8 +324163,31 @@ Monet is an open-source Python package for analyzing and integrating scRNA-Seq d
     sc:name "Monet-RNA" ;
     sc:url "https://github.com/flo-compbio/monet" .
 
+<https://bio.tools/monet_R> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0602,
+        edam:topic_2885,
+        edam:topic_3172,
+        edam:topic_3360 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAB722>,
+        "pubmed:34694378" ;
+    sc:description "MoNET is an R package providing network analysis of -omics findings. It is built on top of an integrated network, including metabolite-protein interactions, protein interactions and relationships between genetic variations and transcription factor binding sites." ;
+    sc:featureList edam:operation_0276,
+        edam:operation_2437,
+        edam:operation_3660 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "MoNET" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://github.com/JW-Yan/MONET/blob/main/Tutorial.docx?raw=true> ;
+    sc:url "https://github.com/JW-Yan/MONET" .
+
 <https://bio.tools/monetfamily> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0128,
@@ -311785,7 +324205,7 @@ Monet is an open-source Python package for analyzing and integrating scRNA-Seq d
     biotools:primaryContact "Chun-Yu Lin" .
 
 <https://bio.tools/mongkie> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0622,
@@ -311804,8 +324224,17 @@ Monet is an open-source Python package for analyzing and integrating scRNA-Seq d
     sc:url "http://yjjang.github.io/mongkie/" ;
     biotools:primaryContact "Yeongjun Jang" .
 
+<https://bio.tools/mongoose> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:description "MONGOOSE (MetabOlic Network GrOwth Optimization Solved Exactly) is a package for structural analysis and refinement of constraint-based metabolic networks. Unlike other existing software, MONGOOSE uses exact rational arithmetic, which makes its results certifiably accurate" ;
+    sc:isAccessibleForFree true ;
+    sc:license "Apache-2.0" ;
+    sc:name "MONGOOSE" ;
+    sc:softwareHelp <http://cb.csail.mit.edu/cb/mongoose/> ;
+    sc:url "http://cb.csail.mit.edu/cb/mongoose/" .
+
 <https://bio.tools/moni> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0654 ;
@@ -311824,7 +324253,7 @@ Monet is an open-source Python package for analyzing and integrating scRNA-Seq d
     sc:url "https://github.com/maxrossi91/moni" .
 
 <https://bio.tools/monkey> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0654,
@@ -311843,7 +324272,7 @@ Monet is an open-source Python package for analyzing and integrating scRNA-Seq d
     biotools:primaryContact "Michael B Eisen" .
 
 <https://bio.tools/monkeycbp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3304,
         edam:topic_3384,
@@ -311862,7 +324291,7 @@ MonkeyCBP (A toolbox for connectivity-based parcellation of monkey brain).""" ;
     sc:url "https://github.com/bheAI/MonkeyCBP_CLI" .
 
 <https://bio.tools/monn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0154,
@@ -311883,7 +324312,7 @@ The benchmark dataset described in this paper can be found in ./data/, and the c
     sc:url "https://github.com/lishuya17/MONN" .
 
 <https://bio.tools/monoclad> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3053 ;
@@ -311900,14 +324329,14 @@ The benchmark dataset described in this paper can be found in ./data/, and the c
 
 <https://bio.tools/monocle> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Gene expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ] ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_1213" ;
+            sc:name "Gene expression data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1713" ;
-            sc:name "Fate map" ;
-            sc:sameAs "http://edamontology.org/data_1713" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1713" ;
+            sc:encodingFormat "http://edamontology.org/format_2032" ;
+            sc:name "Fate map" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -311935,14 +324364,14 @@ The benchmark dataset described in this paper can be found in ./data/, and the c
 
 <https://bio.tools/monores> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3424" ;
-            sc:name "Raw image" ;
-            sc:sameAs "http://edamontology.org/data_3424" ] ;
+            sc:additionalType "http://edamontology.org/data_3424" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Raw image" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Image" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0154,
@@ -311959,14 +324388,13 @@ The benchmark dataset described in this paper can be found in ./data/, and the c
 
 <https://bio.tools/monosaccharidedb> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2746" ;
-            sc:name "MonosaccharideDB ID" ;
-            sc:sameAs "http://edamontology.org/data_2746" ] ;
+            sc:additionalType "http://edamontology.org/data_2746" ;
+            sc:name "MonosaccharideDB ID" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2313" ;
-            sc:name "Carbohydrate report" ;
-            sc:sameAs "http://edamontology.org/data_2313" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2313" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Carbohydrate report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0152 ;
     sc:citation <https://doi.org/10.1007/978-4-431-56454-6_3> ;
@@ -311981,7 +324409,7 @@ The benchmark dataset described in this paper can be found in ./data/, and the c
     biotools:primaryContact "Thomas Lütteke" .
 
 <https://bio.tools/monovar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0622 ;
@@ -311995,7 +324423,7 @@ The benchmark dataset described in this paper can be found in ./data/, and the c
     sc:url "https://bitbucket.org/hamimzafar/monovar" .
 
 <https://bio.tools/monster> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0097,
@@ -312015,7 +324443,7 @@ The benchmark dataset described in this paper can be found in ./data/, and the c
     biotools:primaryContact "Webmaster" .
 
 <https://bio.tools/montage> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0625,
@@ -312034,7 +324462,7 @@ The benchmark dataset described in this paper can be found in ./data/, and the c
     sc:url "https://github.com/CAG-CNV/MONTAGE" .
 
 <https://bio.tools/montecarbo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0152,
         edam:topic_0209,
         edam:topic_0821,
@@ -312051,7 +324479,7 @@ The benchmark dataset described in this paper can be found in ./data/, and the c
     biotools:primaryContact <https://orcid.org/0000-0001-7596-8161> .
 
 <https://bio.tools/monti> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0625,
@@ -312075,7 +324503,7 @@ The benchmark dataset described in this paper can be found in ./data/, and the c
     sc:url "https://github.com/inukj/MONTI" .
 
 <https://bio.tools/moods> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Script" ;
     sc:applicationSubCategory edam:topic_0102,
@@ -312092,7 +324520,7 @@ The benchmark dataset described in this paper can be found in ./data/, and the c
     sc:url "https://www.cs.helsinki.fi/group/pssmfind/" .
 
 <https://bio.tools/moonlightr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -312115,7 +324543,7 @@ The benchmark dataset described in this paper can be found in ./data/, and the c
         "Catharina Olsen" .
 
 <https://bio.tools/moose> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2259,
@@ -312131,7 +324559,7 @@ The benchmark dataset described in this paper can be found in ./data/, and the c
     biotools:primaryContact "Upinder S. Bhalla" .
 
 <https://bio.tools/moped> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0602,
@@ -312149,7 +324577,7 @@ Mathematical modeling of metabolic networks is a powerful approach to investigat
     sc:url "https://gitlab.com/marvin.vanaalst/moped" .
 
 <https://bio.tools/mops> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -312168,7 +324596,7 @@ Mathematical modeling of metabolic networks is a powerful approach to investigat
     biotools:primaryContact "Philipp Eser" .
 
 <https://bio.tools/morbinet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0634,
@@ -312184,7 +324612,7 @@ Mathematical modeling of metabolic networks is a powerful approach to investigat
     sc:url "https://morbinet.org/shiny" .
 
 <https://bio.tools/morca> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3366,
         edam:topic_3372,
@@ -312207,7 +324635,7 @@ Mathematical modeling of metabolic networks is a powerful approach to investigat
     biotools:primaryContact "Esteban Pérez-Wohlfeil" .
 
 <https://bio.tools/mordred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0154,
@@ -312225,8 +324653,46 @@ Mathematical modeling of metabolic networks is a powerful approach to investigat
     sc:url "https://github.com/mordred-descriptor/mordred" ;
     biotools:primaryContact "Moriwaki H" .
 
+<https://bio.tools/morethananova> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0092,
+        edam:topic_2269,
+        edam:topic_3678 ;
+    sc:citation <https://doi.org/10.1371/JOURNAL.PONE.0271185>,
+        "pmcid:PMC9269871",
+        "pubmed:35802729" ;
+    sc:description "A user-friendly Shiny/R application for exploring and comparing data with interactive visualization." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3435 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "moreThanANOVA" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://hanchen.shinyapps.io/moreThanANOVA/" .
+
+<https://bio.tools/morf-funcpred> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0082,
+        edam:topic_3474,
+        edam:topic_3538 ;
+    sc:citation <https://doi.org/10.3389/FPHAR.2022.856417>,
+        "pmcid:PMC8957949",
+        "pubmed:35350759" ;
+    sc:description "A package for molecular recognition feature function prediction based on multi-label learning and ensemble learning" ;
+    sc:featureList edam:operation_0303,
+        edam:operation_0474,
+        edam:operation_1777,
+        edam:operation_3904 ;
+    sc:license "Not licensed" ;
+    sc:name "MoRF-FUNCpred" ;
+    sc:url "https://github.com/LiangYu-Xidian/MoRF-FUNCpred" .
+
 <https://bio.tools/morfchibi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -312234,6 +324700,8 @@ Mathematical modeling of metabolic networks is a powerful approach to investigat
     sc:citation "pubmed:27174932" ;
     sc:description "New computational approach for a fast and accurate prediction of MoRFs(Molecular Recognition Features) in protein sequences." ;
     sc:featureList edam:operation_3092 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Apache-2.0" ;
     sc:name "MoRFCHiBi" ;
     sc:operatingSystem "Linux" ;
     sc:softwareHelp <http://gsponerlab.msl.ubc.ca/software/morf_chibi/overview/> ;
@@ -312241,7 +324709,7 @@ Mathematical modeling of metabolic networks is a powerful approach to investigat
     biotools:primaryContact "Nawar Malhis" .
 
 <https://bio.tools/morfee> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:citation <https://doi.org/10.1101/2020.03.29.012054> ;
     sc:description "MORFEE (Mutation on Open Reading FramE annotation) is a tool (R package) that, from a VCF file, detects and annotates single nucleotide variants creating premature ATG codons." ;
     sc:featureList edam:operation_3661 ;
@@ -312251,7 +324719,7 @@ Mathematical modeling of metabolic networks is a powerful approach to investigat
     sc:url "https://daissi.github.io/MORFEE/" .
 
 <https://bio.tools/morfeus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3321 ;
@@ -312270,7 +324738,7 @@ Mathematical modeling of metabolic networks is a powerful approach to investigat
         "M Volkmer" .
 
 <https://bio.tools/morgana> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3064,
@@ -312292,7 +324760,7 @@ Mathematical modeling of metabolic networks is a powerful approach to investigat
     sc:url "https://github.com/LabTrivedi/MOrgAna.git" .
 
 <https://bio.tools/morld> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2275,
@@ -312317,7 +324785,7 @@ MORLD is a molecule optimization method based on reinforcement learning and dock
     sc:url "http://morld.kaist.ac.kr" .
 
 <https://bio.tools/morph> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602 ;
     sc:citation <https://doi.org/10.1105/tpc.112.104513>,
@@ -312333,7 +324801,7 @@ MORLD is a molecule optimization method based on reinforcement learning and dock
     sc:url "http://bioinformatics.psb.ugent.be/webtools/morph/" .
 
 <https://bio.tools/morphdata> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3304,
@@ -312354,7 +324822,7 @@ MORLD is a molecule optimization method based on reinforcement learning and dock
     sc:url "http://github.com/anabelacampos/MorphData" .
 
 <https://bio.tools/morphdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0203,
         edam:topic_0602,
@@ -312386,7 +324854,7 @@ rdf Generate RDF graph (for MorphDB).""" ;
     sc:url "http://bioinformatics.psb.ugent.be/webtools/morphdb/morphDB/index/" .
 
 <https://bio.tools/morpheus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121 ;
     sc:citation <https://doi.org/10.1021/pr301024c> ;
@@ -312400,34 +324868,34 @@ rdf Generate RDF graph (for MorphDB).""" ;
 
 <https://bio.tools/morpheus-framework> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ],
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:encodingFormat "http://edamontology.org/format_2585" ;
+            sc:name "Pathway or network" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ],
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:encodingFormat "http://edamontology.org/format_2585" ;
+            sc:name "Pathway or network" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ] ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:encodingFormat "http://edamontology.org/format_2585" ;
+            sc:name "Pathway or network" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3870" ;
-            sc:name "Trajectory data" ;
-            sc:sameAs "http://edamontology.org/data_3870" ],
+            sc:additionalType "http://edamontology.org/data_3449" ;
+            sc:encodingFormat "http://edamontology.org/format_3604" ;
+            sc:name "Cell migration track image" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3449" ;
-            sc:name "Cell migration track image" ;
-            sc:sameAs "http://edamontology.org/data_3449" ],
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:encodingFormat "http://edamontology.org/format_3604" ;
+            sc:name "Pathway or network" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ],
+            sc:additionalType "http://edamontology.org/data_3870" ;
+            sc:encodingFormat "http://edamontology.org/format_3603" ;
+            sc:name "Trajectory data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3870" ;
-            sc:name "Trajectory data" ;
-            sc:sameAs "http://edamontology.org/data_3870" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3870" ;
+            sc:encodingFormat "http://edamontology.org/format_3877" ;
+            sc:name "Trajectory data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_2229,
@@ -312465,7 +324933,7 @@ rdf Generate RDF graph (for MorphDB).""" ;
     biotools:primaryContact <https://orcid.org/0000-0003-0137-5106> .
 
 <https://bio.tools/morpheus_ij> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0108,
@@ -312484,7 +324952,7 @@ MORPHEUS is a Fiji ImageJ2 plugin for the automated evaluation of cell morphomet
     sc:url "https://sourceforge.net/projects/morpheus-for-fiji/" .
 
 <https://bio.tools/morphin> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0621,
@@ -312502,17 +324970,31 @@ MORPHEUS is a Fiji ImageJ2 plugin for the automated evaluation of cell morphomet
     sc:url "http://www.inetbio.org/morphin/" ;
     biotools:primaryContact "Sohyun Hwang" .
 
-<https://bio.tools/morphine_milligram_equivalents> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3416,
-        edam:topic_3421 ;
-    sc:citation <https://doi.org/10.1097/CORR.0000000000000885>,
-        "pubmed:31389888" ;
-    sc:description "> VERY_LOW CONFIDENCE! | > HOMEPAGE MISSING! | > CORRECT NAME OF TOOL COULD ALSO BE 'morphine milligram', '30-day morphine milligram equivalents', 'milligram equivalents', '30-day morphine milligram equivalents 1288' | Has a Prescription-limiting Law in Rhode Island Helped to Reduce Opioid Use After Total Joint Arthroplasty? | BACKGROUND:In the United States, since 2016, at least 28 of 50 state legislatures have passed laws regarding mandatory prescribing limits for opioid medications. One of the earliest state laws (which was passed in Rhode Island in 2016) restricted the maximum morphine milligram equivalents provided in the first postoperative prescription for patients defined as opioid-naïve to 30 morphine milligram equivalents per day, 150 total morphine milligram equivalents, or 20 total doses. While such regulations are increasingly common in the United States, their effects on opioid use after total joint arthroplasty are unclear" ;
-    sc:name "morphine milligram equivalents" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31389888" .
+<https://bio.tools/morphious> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workflow" ;
+    sc:applicationSubCategory edam:topic_0769,
+        edam:topic_3474,
+        edam:topic_3500,
+        edam:topic_3954 ;
+    sc:citation <https://doi.org/10.1186/S12974-021-02376-9>,
+        "pmcid:PMC8800241",
+        "pubmed:35093113" ;
+    sc:description "An unsupervised machine learning workflow to detect the activation of microglia and astrocytes." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3432,
+        edam:operation_3891 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "MORPHIOUS" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://github.com/jsilburt/Morphious/blob/master/v2/tutorial_writeup/22-2-27_tutorial_README.pdf> ;
+    sc:url "https://github.com/jsilburt/Morphious" .
 
 <https://bio.tools/morphographx> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0081,
@@ -312529,7 +325011,7 @@ MORPHEUS is a Fiji ImageJ2 plugin for the automated evaluation of cell morphomet
     biotools:primaryContact "Richard Smith" .
 
 <https://bio.tools/morpholibj> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_3315,
         edam:topic_3382 ;
@@ -312546,7 +325028,7 @@ MORPHEUS is a Fiji ImageJ2 plugin for the automated evaluation of cell morphomet
     biotools:primaryContact "Philippe Andrey" .
 
 <https://bio.tools/morphomap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3315,
@@ -312566,7 +325048,7 @@ Extract cross sections from long bone meshes at specified intervals along the di
     sc:url "https://github.com/AProfico/morphomap" .
 
 <https://bio.tools/morphot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0611 ;
@@ -312579,8 +325061,27 @@ MorphOT is a plugin for ChimeraX, which allows users to directly interpolate mul
     sc:name "MorphOT" ;
     sc:url "https://github.com/kdd-ubc/MorphOT.git" .
 
+<https://bio.tools/morphotools2> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library",
+        "Workflow" ;
+    sc:applicationSubCategory edam:topic_0769,
+        edam:topic_2269 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC173>,
+        "pubmed:35323864" ;
+    sc:description "The package MorphoTools2 is intended for multivariate analyses of morphological data." ;
+    sc:featureList edam:operation_2938,
+        edam:operation_2939,
+        edam:operation_3891 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "MorphoTools2" ;
+    sc:operatingSystem "Mac",
+        "Windows" ;
+    sc:url "https://cran.r-project.org/package=MorphoTools2" .
+
 <https://bio.tools/morris-lecar-matlab> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3304,
@@ -312597,7 +325098,7 @@ MorphOT is a plugin for ChimeraX, which allows users to directly interpolate mul
     biotools:primaryContact "Guan Wenye" .
 
 <https://bio.tools/mosaic> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3053,
         edam:topic_3056,
@@ -312614,7 +325115,7 @@ MorphOT is a plugin for ChimeraX, which allows users to directly interpolate mul
     biotools:primaryContact "Leithen K. M’Gonigle" .
 
 <https://bio.tools/mosaic_vaccine_designer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0804,
@@ -312630,7 +325131,7 @@ MorphOT is a plugin for ChimeraX, which allows users to directly interpolate mul
     sc:url "http://www.hiv.lanl.gov/content/sequence/MOSAIC/makeVaccine.html" .
 
 <https://bio.tools/mosaicbioacc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0780,
@@ -312649,7 +325150,7 @@ MorphOT is a plugin for ChimeraX, which allows users to directly interpolate mul
     biotools:primaryContact <https://orcid.org/0000-0003-4604-0166> .
 
 <https://bio.tools/mosaicexplorerj> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0621,
@@ -312667,7 +325168,7 @@ MorphOT is a plugin for ChimeraX, which allows users to directly interpolate mul
     sc:url "https://github.com/SebastienTs/MosaicExplorerJ" .
 
 <https://bio.tools/mosaics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0204,
@@ -312687,7 +325188,7 @@ MorphOT is a plugin for ChimeraX, which allows users to directly interpolate mul
     biotools:primaryContact "Dongjun Chung" .
 
 <https://bio.tools/mosaik> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0196 ;
@@ -312708,8 +325209,30 @@ MorphOT is a plugin for ChimeraX, which allows users to directly interpolate mul
     sc:url "https://github.com/wanpinglee/MOSAIK" ;
     biotools:primaryContact "Wan Ping Lee" .
 
+<https://bio.tools/mosbi> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0121,
+        edam:topic_0602,
+        edam:topic_2640,
+        edam:topic_3172,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1101/2021.09.30.462567> ;
+    sc:description "Multi-algorithm Ensemble Biclustering Method MoSBi (Molecular Signature Identification using Biclustering)" ;
+    sc:featureList edam:operation_0337,
+        edam:operation_2422,
+        edam:operation_3435 ;
+    sc:isAccessibleForFree true ;
+    sc:license "AGPL-3.0" ;
+    sc:name "MoSBi" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://bioconductor.org/packages/release/bioc/manuals/mosbi/man/mosbi.pdf> ;
+    sc:url "https://gitlab.lrz.de/lipitum-projects/mosbi" .
+
 <https://bio.tools/mosby> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_1317,
         edam:topic_2275,
@@ -312725,78 +325248,78 @@ MorphOT is a plugin for ChimeraX, which allows users to directly interpolate mul
 
 <https://bio.tools/mosca> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ],
+            sc:additionalType "http://edamontology.org/data_1233" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence set (protein)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2019" ;
-            sc:name "Map data" ;
-            sc:sameAs "http://edamontology.org/data_2019" ],
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Sequence trace" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1233" ;
-            sc:name "Sequence set (protein)" ;
-            sc:sameAs "http://edamontology.org/data_1233" ],
+            sc:additionalType "http://edamontology.org/data_0925" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence assembly" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ],
+            sc:additionalType "http://edamontology.org/data_2019" ;
+            sc:encodingFormat "http://edamontology.org/format_3620" ;
+            sc:name "Map data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0925" ;
-            sc:name "Sequence assembly" ;
-            sc:sameAs "http://edamontology.org/data_0925" ],
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Sequence trace" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ],
+            sc:additionalType "http://edamontology.org/data_0925" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence assembly" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0925" ;
-            sc:name "Sequence assembly" ;
-            sc:sameAs "http://edamontology.org/data_0925" ],
+            sc:additionalType "http://edamontology.org/data_1233" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence set (protein)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1233" ;
-            sc:name "Sequence set (protein)" ;
-            sc:sameAs "http://edamontology.org/data_1233" ] ;
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Sequence trace" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ],
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Sequence trace" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0857" ;
-            sc:name "Sequence search results" ;
-            sc:sameAs "http://edamontology.org/data_0857" ],
+            sc:additionalType "http://edamontology.org/data_1233" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence set (protein)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0925" ;
-            sc:name "Sequence assembly" ;
-            sc:sameAs "http://edamontology.org/data_0925" ],
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:encodingFormat "http://edamontology.org/format_3603" ;
+            sc:name "Pathway or network" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0857" ;
-            sc:name "Sequence search results" ;
-            sc:sameAs "http://edamontology.org/data_0857" ],
+            sc:additionalType "http://edamontology.org/data_0857" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Sequence search results" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3914" ;
-            sc:name "Quality control report" ;
-            sc:sameAs "http://edamontology.org/data_3914" ],
+            sc:additionalType "http://edamontology.org/data_2711" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Genome report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2093" ;
-            sc:name "Data reference" ;
-            sc:sameAs "http://edamontology.org/data_2093" ],
+            sc:additionalType "http://edamontology.org/data_0857" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Sequence search results" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2711" ;
-            sc:name "Genome report" ;
-            sc:sameAs "http://edamontology.org/data_2711" ],
+            sc:additionalType "http://edamontology.org/data_0928" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Gene expression profile" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1233" ;
-            sc:name "Sequence set (protein)" ;
-            sc:sameAs "http://edamontology.org/data_1233" ],
+            sc:additionalType "http://edamontology.org/data_3914" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Quality control report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0928" ;
-            sc:name "Gene expression profile" ;
-            sc:sameAs "http://edamontology.org/data_0928" ],
+            sc:additionalType "http://edamontology.org/data_2093" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data reference" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0925" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence assembly" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3174,
@@ -312828,7 +325351,7 @@ MorphOT is a plugin for ChimeraX, which allows users to directly interpolate mul
     biotools:primaryContact <http://orcid.org/0000-0001-6037-4248> .
 
 <https://bio.tools/moscato> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0634,
@@ -312848,7 +325371,7 @@ MorphOT is a plugin for ChimeraX, which allows users to directly interpolate mul
     sc:url "https://github.com/lorinmil/MOSCATO" .
 
 <https://bio.tools/mosdef-cassandra> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0176,
         edam:topic_0769,
@@ -312866,7 +325389,7 @@ MorphOT is a plugin for ChimeraX, which allows users to directly interpolate mul
     biotools:primaryContact <https://orcid.org/0000-0001-5311-6718> .
 
 <https://bio.tools/mosdepth> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3572 ;
@@ -312883,7 +325406,7 @@ MorphOT is a plugin for ChimeraX, which allows users to directly interpolate mul
     biotools:primaryContact "Brent Pedersen" .
 
 <https://bio.tools/mosdi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0160,
@@ -312901,7 +325424,7 @@ MorphOT is a plugin for ChimeraX, which allows users to directly interpolate mul
     biotools:primaryContact "Tobias Marschall" .
 
 <https://bio.tools/moses> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2275,
@@ -312923,10 +325446,9 @@ Deep generative models are rapidly becoming popular for the discovery of new mol
 
 <https://bio.tools/mosflm> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0937" ;
-            sc:name "Protein X-ray crystallographic data" ;
-            sc:sameAs "http://edamontology.org/data_0937" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0937" ;
+            sc:name "Protein X-ray crystallographic data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_1317,
@@ -312947,7 +325469,7 @@ Deep generative models are rapidly becoming popular for the discovery of new mol
     biotools:primaryContact "Andrew G.W. Leslie" .
 
 <https://bio.tools/mosga> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0621,
@@ -312965,8 +325487,24 @@ The generation of high-quality assemblies, even for large eukaryotic genomes, ha
     sc:name "MOSGA" ;
     sc:url "https://gitlab.com/mosga/mosga" .
 
+<https://bio.tools/moss> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0602 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC179>,
+        "pubmed:35325043" ;
+    sc:description "Multi-omic integration with Sparse Value Decomposition (MOSS), a free and open-source R package for integration and feature selection in multiple large omics datasets." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_3432 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-2.0" ;
+    sc:name "MOSS" ;
+    sc:operatingSystem "Mac",
+        "Windows" ;
+    sc:url "https://CRAN.R-project.org/package=MOSS" .
+
 <https://bio.tools/most> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_2269,
@@ -312981,8 +325519,25 @@ The generation of high-quality assemblies, even for large eukaryotic genomes, ha
     sc:url "http://dlin.web.unc.edu/software/MOST/" ;
     biotools:primaryContact "DANYU LIN" .
 
+<https://bio.tools/most-dl> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_3444,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1109/TMI.2022.3179981>,
+        "pubmed:35657830" ;
+    sc:description "Application in Single-shot T2 Mapping with Severe Head Motion Using Overlapping-echo Acquisition." ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "MOST-DL" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/qinqinyang/MOST-DL" .
+
 <https://bio.tools/most-motif> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3169,
@@ -312997,7 +325552,7 @@ The generation of high-quality assemblies, even for large eukaryotic genomes, ha
     sc:url "http://cbb.sjtu.edu.cn/~ccwei/pub/software/MOST/MOST.php" .
 
 <https://bio.tools/mostwas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0659,
@@ -313015,7 +325570,7 @@ The generation of high-quality assemblies, even for large eukaryotic genomes, ha
     sc:url "https://bhattacharya-a-bt.github.io/MOSTWAS" .
 
 <https://bio.tools/motan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0166,
         edam:topic_0736,
@@ -313032,7 +325587,7 @@ The generation of high-quality assemblies, even for large eukaryotic genomes, ha
     biotools:primaryContact "Eva Aksianov" .
 
 <https://bio.tools/mothe> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3304,
         edam:topic_3382,
@@ -313052,7 +325607,7 @@ Mothe is a PYPI library to detect and track multiple animals in a heterogeneous
     sc:url "https://github.com/tee-lab/MOTHe" .
 
 <https://bio.tools/mothul_krona> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0194,
         edam:topic_3174 ;
@@ -313064,18 +325619,19 @@ Mothe is a PYPI library to detect and track multiple animals in a heterogeneous
     sc:url "https://github.com/accaldwell/mothur_krona" .
 
 <https://bio.tools/mothur> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_3697 ;
     sc:citation <https://doi.org/10.1128/AEM.01541-09> ;
     sc:description "\"Open-source, platform-independent, community-supported software for describing and comparing microbial communities\" Schloss PD et al. 2009" ;
     sc:license "GPL-3.0" ;
     sc:name "mothur" ;
-    sc:softwareHelp <http://mothur.org/wiki/mothur_manual/> ;
+    sc:softwareHelp <http://mothur.org/wiki/>,
+        <http://mothur.org/wiki/mothur_manual/> ;
     sc:url "http://mothur.org/" .
 
 <https://bio.tools/motif-raptor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0749,
@@ -313098,7 +325654,7 @@ Genome-wide association studies (GWAS) have identified thousands of common trait
     sc:url "https://github.com/pinellolab/MotifRaptor" .
 
 <https://bio.tools/motif-x> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0160,
@@ -313115,7 +325671,7 @@ Genome-wide association studies (GWAS) have identified thousands of common trait
     biotools:primaryContact "Daniel Schwartz" .
 
 <https://bio.tools/motif3d> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0081,
@@ -313134,18 +325690,17 @@ Genome-wide association studies (GWAS) have identified thousands of common trait
 
 <https://bio.tools/motif_prob> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3494" ;
-            sc:name "DNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3494" ],
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "DNA sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3495" ;
-            sc:name "RNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3495" ] ;
+            sc:additionalType "http://edamontology.org/data_3495" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "RNA sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2955" ;
-            sc:name "Sequence report" ;
-            sc:sameAs "http://edamontology.org/data_2955" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2955" ;
+            sc:name "Sequence report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0091,
@@ -313167,7 +325722,7 @@ Genome-wide association studies (GWAS) have identified thousands of common trait
     sc:url "https://github.com/DataIntellSystLab/motif_prob" .
 
 <https://bio.tools/motif_scraper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3168,
@@ -313184,7 +325739,7 @@ Genome-wide association studies (GWAS) have identified thousands of common trait
     biotools:primaryContact "Elisha D O Roberson" .
 
 <https://bio.tools/motifbreakr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -313206,7 +325761,7 @@ Genome-wide association studies (GWAS) have identified thousands of common trait
     biotools:primaryContact "Simon Gert Coetzee" .
 
 <https://bio.tools/motifcatcher> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0091,
@@ -313225,7 +325780,7 @@ Genome-wide association studies (GWAS) have identified thousands of common trait
     biotools:primaryContact "Phillip Seitzer" .
 
 <https://bio.tools/motifcounter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203 ;
     sc:citation <https://doi.org/10.18129/B9.bioc.motifcounter> ;
@@ -313244,7 +325799,7 @@ Genome-wide association studies (GWAS) have identified thousands of common trait
     biotools:primaryContact "Wolfgang Kopp" .
 
 <https://bio.tools/motifcut> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654,
@@ -313261,7 +325816,7 @@ Genome-wide association studies (GWAS) have identified thousands of common trait
     biotools:primaryContact "Serafim Batzoglou" .
 
 <https://bio.tools/motifdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -313281,7 +325836,7 @@ Genome-wide association studies (GWAS) have identified thousands of common trait
     biotools:primaryContact "Paul Shannon" .
 
 <https://bio.tools/motifdetector> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0160,
@@ -313298,7 +325853,7 @@ Genome-wide association studies (GWAS) have identified thousands of common trait
     biotools:primaryContact "Lusheng Wang" .
 
 <https://bio.tools/motifeR> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -313321,7 +325876,7 @@ Shisheng Wang, Yue Cai, Jingqiu Cheng, Wenxue Li, Yansheng Liu and Hao Yang. "mo
     sc:url "https://www.omicsolution.org/wukong/motifeR" .
 
 <https://bio.tools/motifgenie> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0749,
@@ -313340,7 +325895,7 @@ Shisheng Wang, Yue Cai, Jingqiu Cheng, Wenxue Li, Yansheng Liu and Hao Yang. "mo
     biotools:primaryContact <https://orcid.org/0000-0002-5532-0154> .
 
 <https://bio.tools/motiflab> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application",
         "Workbench" ;
@@ -313370,7 +325925,7 @@ Shisheng Wang, Yue Cai, Jingqiu Cheng, Wenxue Li, Yansheng Liu and Hao Yang. "mo
         "Kjetil Klepper" .
 
 <https://bio.tools/motifmatchr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:description "Quickly find motif matches for many motifs and many sequences. Wraps C++ code from the MOODS motif calling library, which was developed by Pasi Rastas, Janne Korhonen, and Petri Martinmäki." ;
@@ -313387,7 +325942,7 @@ Shisheng Wang, Yue Cai, Jingqiu Cheng, Wenxue Li, Yansheng Liu and Hao Yang. "mo
     biotools:primaryContact "Alicia Schep" .
 
 <https://bio.tools/motifregressor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0654 ;
@@ -313401,7 +325956,7 @@ Shisheng Wang, Yue Cai, Jingqiu Cheng, Wenxue Li, Yansheng Liu and Hao Yang. "mo
     sc:url "http://www.math.umass.edu/~conlon/mr.html" .
 
 <https://bio.tools/motifrg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -313421,7 +325976,7 @@ Shisheng Wang, Yue Cai, Jingqiu Cheng, Wenxue Li, Yansheng Liu and Hao Yang. "mo
     biotools:primaryContact "Zizhen Yao" .
 
 <https://bio.tools/motifsampler> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0654,
@@ -313440,7 +325995,7 @@ Shisheng Wang, Yue Cai, Jingqiu Cheng, Wenxue Li, Yansheng Liu and Hao Yang. "mo
     sc:url "http://homes.esat.kuleuven.be/~sistawww/bioi/thijs/Work/MotifSampler.html" .
 
 <https://bio.tools/motifscan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654 ;
     sc:citation <https://doi.org/10.1093/nar/gkl585> ;
@@ -313453,7 +326008,7 @@ Shisheng Wang, Yue Cai, Jingqiu Cheng, Wenxue Li, Yansheng Liu and Hao Yang. "mo
     sc:url "http://motifscan.stanford.edu/" .
 
 <https://bio.tools/motifsearch> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3125 ;
@@ -313469,7 +326024,7 @@ Shisheng Wang, Yue Cai, Jingqiu Cheng, Wenxue Li, Yansheng Liu and Hao Yang. "mo
     sc:url "http://compbio.cs.princeton.edu/bindsites/" .
 
 <https://bio.tools/motifsim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654,
@@ -313489,14 +326044,14 @@ Shisheng Wang, Yue Cai, Jingqiu Cheng, Wenxue Li, Yansheng Liu and Hao Yang. "mo
 
 <https://bio.tools/motifstack> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1361" ;
-            sc:name "Position frequency matrix" ;
-            sc:sameAs "http://edamontology.org/data_1361" ] ;
+            sc:additionalType "http://edamontology.org/data_1361" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "Position frequency matrix" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Image" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -313521,14 +326076,12 @@ Shisheng Wang, Yue Cai, Jingqiu Cheng, Wenxue Li, Yansheng Liu and Hao Yang. "mo
 
 <https://bio.tools/motifsuite> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ] ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:name "Nucleic acid sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2070" ;
-            sc:name "Sequence motif (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_2070" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2070" ;
+            sc:name "Sequence motif (nucleic acid)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3511 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/bts293> ;
@@ -313544,7 +326097,7 @@ Shisheng Wang, Yue Cai, Jingqiu Cheng, Wenxue Li, Yansheng Liu and Hao Yang. "mo
     sc:url "http://bioinformatics.intec.ugent.be/MotifSuite/Index.htm" .
 
 <https://bio.tools/motifviz> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0166,
@@ -313564,8 +326117,30 @@ Shisheng Wang, Yue Cai, Jingqiu Cheng, Wenxue Li, Yansheng Liu and Hao Yang. "mo
     sc:url "http://biowulf.bu.edu/MotifViz/" ;
     biotools:primaryContact "Yutao Fu" .
 
+<https://bio.tools/motilitai> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0091,
+        edam:topic_3303,
+        edam:topic_3344,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1016/J.ISCI.2022.104644>,
+        "pmcid:PMC9287611",
+        "pubmed:35856034" ;
+    sc:description "A machine learning framework for automatic prediction of human sperm motility." ;
+    sc:featureList edam:operation_3436,
+        edam:operation_3659,
+        edam:operation_3937 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "motilitAI" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/EIHW/motilitAI" .
+
 <https://bio.tools/motimul> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0160,
@@ -313587,7 +326162,7 @@ Execute MotiMul without distinguishing a sequence and its complementary strand i
     sc:url "https://github.com/ko-ichimo-ri/MotiMul" .
 
 <https://bio.tools/motioncor2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0611 ;
     sc:citation <https://doi.org/10.1038/nmeth.4193> ;
@@ -313603,7 +326178,7 @@ Execute MotiMul without distinguishing a sequence and its complementary strand i
         "Shawn Zheng" .
 
 <https://bio.tools/motiv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -313624,18 +326199,17 @@ Execute MotiMul without distinguishing a sequence and its complementary strand i
 
 <https://bio.tools/motivevalidator> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1127" ;
-            sc:name "PDB ID" ;
-            sc:sameAs "http://edamontology.org/data_1127" ],
+            sc:additionalType "http://edamontology.org/data_0883" ;
+            sc:encodingFormat "http://edamontology.org/format_1477" ;
+            sc:name "Structure" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0883" ;
-            sc:name "Structure" ;
-            sc:sameAs "http://edamontology.org/data_0883" ] ;
+            sc:additionalType "http://edamontology.org/data_1127" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "PDB ID" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1539" ;
-            sc:name "Protein structural quality report" ;
-            sc:sameAs "http://edamontology.org/data_1539" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1539" ;
+            sc:name "Protein structural quality report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0081,
@@ -313665,7 +326239,7 @@ residues.""" ;
         "Primacy Contact" .
 
 <https://bio.tools/motoRneuron> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3068,
@@ -313691,7 +326265,7 @@ The purpose of this document is to get you started using the motoRneuron package
     sc:url "https://github.com/tweedell/motoRneuron" .
 
 <https://bio.tools/motto> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0160,
@@ -313714,16 +326288,38 @@ git clone https://github.com/MichaelMW/motto.git.""" ;
     sc:name "Motto" ;
     sc:url "http://wanglab.ucsd.edu/star/motto" .
 
+<https://bio.tools/motulizer> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_3168,
+        edam:topic_3174,
+        edam:topic_3293,
+        edam:topic_3944 ;
+    sc:citation <https://doi.org/10.1093/NARGAB/LQAC060>,
+        "pmcid:PMC9376867",
+        "pubmed:35979445" ;
+    sc:description "A robust Bayesian approach to leverage metagenome-assembled genomes for core-genome estimation." ;
+    sc:featureList edam:operation_0310,
+        edam:operation_3432,
+        edam:operation_3435 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "mOTUlizer" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://github.com/moritzbuck/mOTUlizer" .
+
 <https://bio.tools/motus> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0850" ;
-            sc:name "Sequence set" ;
-            sc:sameAs "http://edamontology.org/data_0850" ] ;
+            sc:additionalType "http://edamontology.org/data_0850" ;
+            sc:encodingFormat "http://edamontology.org/format_1931" ;
+            sc:name "Sequence set" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2082" ;
-            sc:name "Matrix" ;
-            sc:sameAs "http://edamontology.org/data_2082" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2082" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Matrix" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3174 ;
     sc:citation <https://doi.org/10.1038/nmeth.2693>,
@@ -313744,7 +326340,7 @@ git clone https://github.com/MichaelMW/motto.git.""" ;
     sc:url "https://motu-tool.org/" .
 
 <https://bio.tools/mountainClimber> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3170,
@@ -313760,7 +326356,7 @@ git clone https://github.com/MichaelMW/motto.git.""" ;
     sc:url "http://github.com/gxiaolab/mountainClimber" .
 
 <https://bio.tools/mouse_atlas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0204,
@@ -313784,7 +326380,7 @@ git clone https://github.com/MichaelMW/motto.git.""" ;
     biotools:primaryContact "Marco A. Marra" .
 
 <https://bio.tools/mouse_proteome_project> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0121,
@@ -313806,7 +326402,7 @@ git clone https://github.com/MichaelMW/motto.git.""" ;
     biotools:primaryContact "Thomas Kislinger" .
 
 <https://bio.tools/mousebook> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0199,
@@ -313826,7 +326422,7 @@ git clone https://github.com/MichaelMW/motto.git.""" ;
     sc:url "http://www.mousebook.org/" .
 
 <https://bio.tools/mousedivgeno> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0625,
@@ -313843,7 +326439,7 @@ git clone https://github.com/MichaelMW/motto.git.""" ;
     biotools:primaryContact "Jessica Seavey" .
 
 <https://bio.tools/mousefm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0203,
@@ -313862,7 +326458,7 @@ This repository contains the backend of the MouseFM tool including the scripts o
     sc:url "https://github.com/matmu/MouseFM-Backend" .
 
 <https://bio.tools/mouseindeldb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0199,
@@ -313879,7 +326475,7 @@ This repository contains the backend of the MouseFM tool including the scripts o
     sc:url "http://polybrowse.abcc.ncifcrf.gov/" .
 
 <https://bio.tools/mousemine> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0621,
@@ -313895,7 +326491,7 @@ This repository contains the backend of the MouseFM tool including the scripts o
     sc:url "http://www.mousemine.org/mousemine/begin.do" .
 
 <https://bio.tools/mousr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -313914,7 +326510,7 @@ This repository contains the backend of the MouseFM tool including the scripts o
     sc:url "https://mousr.qub.ac.uk/" .
 
 <https://bio.tools/movapa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0780,
         edam:topic_3170,
@@ -313930,8 +326526,25 @@ Alternative polyadenylation (APA) has been widely recognized as a widespread mec
     sc:name "movAPA" ;
     sc:url "https://github.com/BMILAB/movAPA" .
 
+<https://bio.tools/moveapps> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Suite" ;
+    sc:applicationSubCategory edam:topic_0610,
+        edam:topic_0769,
+        edam:topic_3500 ;
+    sc:citation <https://doi.org/10.1186/S40462-022-00327-4>,
+        "pmcid:PMC9290230",
+        "pubmed:35843990" ;
+    sc:description "MoveApps is a no-code analysis platform for animal tracking data hosted by the Max Planck Institute of Animal Behavior. The aim is to make sophisticated analytical tools accessible to a larger audience." ;
+    sc:isAccessibleForFree true ;
+    sc:name "MoveApps" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://www.moveapps.org" .
+
 <https://bio.tools/movics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_0769,
@@ -313948,7 +326561,7 @@ The goal of MOVICS is to provide a unified interface for 10 state-of-the-art mul
     sc:url "https://github.com/xlucpu/MOVICS" .
 
 <https://bio.tools/moviemaker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0130,
@@ -313967,7 +326580,7 @@ The goal of MOVICS is to provide a unified interface for 10 state-of-the-art mul
     biotools:primaryContact "MovieMaker Support" .
 
 <https://bio.tools/movies> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0081,
@@ -313983,8 +326596,29 @@ The goal of MOVICS is to provide a unified interface for 10 state-of-the-art mul
     sc:name "MoViES" ;
     sc:url "http://ang.cz3.nus.edu.sg/cgi-bin/prog/norm.pl" .
 
+<https://bio.tools/movis> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Desktop application",
+        "Web application",
+        "Workflow" ;
+    sc:applicationSubCategory edam:topic_3168,
+        edam:topic_3174,
+        edam:topic_3308 ;
+    sc:citation <https://doi.org/10.1016/J.CSBJ.2022.02.012>,
+        "pmcid:PMC8886009",
+        "pubmed:35284047" ;
+    sc:description "A multi-omics software solution for multi-modal time-series clustering, embedding, and visualizing tasks." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3432,
+        edam:operation_3565 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "MOVIS" ;
+    sc:operatingSystem "Linux" ;
+    sc:url "https://hub.docker.com/r/aanzel/movis" .
+
 <https://bio.tools/mowserv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3077,
@@ -314010,7 +326644,7 @@ The goal of MOVICS is to provide a unified interface for 10 state-of-the-art mul
         "Esteban Pérez-Wohlfeil" .
 
 <https://bio.tools/mp-nerf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0176,
         edam:topic_0196,
@@ -314030,8 +326664,29 @@ The goal of MOVICS is to provide a unified interface for 10 state-of-the-art mul
         "Windows" ;
     sc:url "https://github.com/EleutherAI/mp_nerf" .
 
+<https://bio.tools/mp-net> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_3382,
+        edam:topic_3474,
+        edam:topic_3500 ;
+    sc:citation <https://doi.org/10.1371/JOURNAL.PONE.0269449>,
+        "pmcid:PMC9200300",
+        "pubmed:35704628" ;
+    sc:description "Deep learning-based segmentation for fluorescence microscopy images of microplastics isolated from clams." ;
+    sc:featureList edam:operation_0455,
+        edam:operation_3443,
+        edam:operation_3799 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "MP-Net" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/sanghyeonp/MP-Net" .
+
 <https://bio.tools/mp3> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0621,
@@ -314047,7 +326702,7 @@ The goal of MOVICS is to provide a unified interface for 10 state-of-the-art mul
     biotools:primaryContact "Vineetk Sharma" .
 
 <https://bio.tools/mp3tree> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0199,
@@ -314065,7 +326720,7 @@ Supplementary repository for: https://github.com/AlgoLab/mp3treesim.""" ;
     sc:url "https://github.com/AlgoLab/mp3treesim" .
 
 <https://bio.tools/mpa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1002/pmic.200700776>,
@@ -314084,7 +326739,7 @@ Supplementary repository for: https://github.com/AlgoLab/mp3treesim.""" ;
     biotools:primaryContact <http://orcid.org/0000-0002-0246-3119> .
 
 <https://bio.tools/mpa_pathway_tool> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0602,
@@ -314106,7 +326761,7 @@ Supplementary repository for: https://github.com/AlgoLab/mp3treesim.""" ;
     sc:url "https://github.com/danielwalke/MPA_Pathway_Tool" .
 
 <https://bio.tools/mpa_portable> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -314124,62 +326779,48 @@ Supplementary repository for: https://github.com/AlgoLab/mp3treesim.""" ;
 
 <https://bio.tools/mpagenomics> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3111" ;
-            sc:name "Processed microarray data" ;
-            sc:sameAs "http://edamontology.org/data_3111" ],
+            sc:additionalType "http://edamontology.org/data_3111" ;
+            sc:name "Processed microarray data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2531" ;
-            sc:name "Experiment report" ;
-            sc:sameAs "http://edamontology.org/data_2531" ],
+            sc:additionalType "http://edamontology.org/data_3111" ;
+            sc:name "Processed microarray data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3110" ;
-            sc:name "Raw microarray data" ;
-            sc:sameAs "http://edamontology.org/data_3110" ],
+            sc:additionalType "http://edamontology.org/data_3111" ;
+            sc:name "Processed microarray data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3111" ;
-            sc:name "Processed microarray data" ;
-            sc:sameAs "http://edamontology.org/data_3111" ],
+            sc:additionalType "http://edamontology.org/data_2531" ;
+            sc:name "Experiment report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3111" ;
-            sc:name "Processed microarray data" ;
-            sc:sameAs "http://edamontology.org/data_3111" ],
+            sc:additionalType "http://edamontology.org/data_3111" ;
+            sc:name "Processed microarray data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3111" ;
-            sc:name "Processed microarray data" ;
-            sc:sameAs "http://edamontology.org/data_3111" ],
+            sc:additionalType "http://edamontology.org/data_3111" ;
+            sc:name "Processed microarray data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3111" ;
-            sc:name "Processed microarray data" ;
-            sc:sameAs "http://edamontology.org/data_3111" ] ;
+            sc:additionalType "http://edamontology.org/data_3110" ;
+            sc:name "Raw microarray data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3111" ;
-            sc:name "Processed microarray data" ;
-            sc:sameAs "http://edamontology.org/data_3111" ],
+            sc:additionalType "http://edamontology.org/data_2531" ;
+            sc:name "Experiment report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3111" ;
-            sc:name "Processed microarray data" ;
-            sc:sameAs "http://edamontology.org/data_3111" ],
+            sc:additionalType "http://edamontology.org/data_3111" ;
+            sc:name "Processed microarray data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2531" ;
-            sc:name "Experiment report" ;
-            sc:sameAs "http://edamontology.org/data_2531" ],
+            sc:additionalType "http://edamontology.org/data_3111" ;
+            sc:name "Processed microarray data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2535" ;
-            sc:name "Sequence tag profile" ;
-            sc:sameAs "http://edamontology.org/data_2535" ],
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:name "Sequence features" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3111" ;
-            sc:name "Processed microarray data" ;
-            sc:sameAs "http://edamontology.org/data_3111" ],
+            sc:additionalType "http://edamontology.org/data_2531" ;
+            sc:name "Experiment report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2531" ;
-            sc:name "Experiment report" ;
-            sc:sameAs "http://edamontology.org/data_2531" ],
+            sc:additionalType "http://edamontology.org/data_2535" ;
+            sc:name "Sequence tag profile" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3111" ;
+            sc:name "Processed microarray data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2269,
@@ -314203,7 +326844,7 @@ Supplementary repository for: https://github.com/AlgoLab/mp3treesim.""" ;
     biotools:primaryContact "Samuel Blanck" .
 
 <https://bio.tools/mpbind> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0654 ;
@@ -314219,14 +326860,12 @@ Supplementary repository for: https://github.com/AlgoLab/mp3treesim.""" ;
 
 <https://bio.tools/mpblast> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0857" ;
-            sc:name "Sequence search results" ;
-            sc:sameAs "http://edamontology.org/data_0857" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0857" ;
+            sc:name "Sequence search results" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0219 ;
@@ -314243,7 +326882,7 @@ Supplementary repository for: https://github.com/AlgoLab/mp3treesim.""" ;
     biotools:primaryContact "Ian Korf" .
 
 <https://bio.tools/mpcc-solution-genetic-regulatory-circuit-design-problems> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3315,
         edam:topic_3895 ;
@@ -314258,7 +326897,7 @@ Supplementary repository for: https://github.com/AlgoLab/mp3treesim.""" ;
     biotools:primaryContact "James Allison" .
 
 <https://bio.tools/mpd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0634,
@@ -314280,7 +326919,7 @@ Supplementary repository for: https://github.com/AlgoLab/mp3treesim.""" ;
     biotools:primaryContact "Contact Form" .
 
 <https://bio.tools/mpd-primer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0632,
         edam:topic_3168,
@@ -314299,7 +326938,7 @@ Supplementary repository for: https://github.com/AlgoLab/mp3treesim.""" ;
     biotools:primaryContact "Support" .
 
 <https://bio.tools/mpda> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3518 ;
@@ -314315,7 +326954,7 @@ Supplementary repository for: https://github.com/AlgoLab/mp3treesim.""" ;
     sc:url "http://www.stat.sinica.edu.tw/hsinchou/genetics/pooledDNA/mpda.htm" .
 
 <https://bio.tools/mpea> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2259,
@@ -314330,7 +326969,7 @@ Supplementary repository for: https://github.com/AlgoLab/mp3treesim.""" ;
     sc:url "http://ekhidna.biocenter.helsinki.fi/poxo/mpea" .
 
 <https://bio.tools/mpex> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -314347,7 +326986,7 @@ Supplementary repository for: https://github.com/AlgoLab/mp3treesim.""" ;
     biotools:primaryContact "Stephen H. White" .
 
 <https://bio.tools/mpfe> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0160,
@@ -314367,7 +327006,7 @@ Supplementary repository for: https://github.com/AlgoLab/mp3treesim.""" ;
     biotools:primaryContact "Conrad Burden" .
 
 <https://bio.tools/mpgafold> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0099,
@@ -314382,7 +327021,7 @@ Supplementary repository for: https://github.com/AlgoLab/mp3treesim.""" ;
     biotools:primaryContact "Bruce A. Shapiro" .
 
 <https://bio.tools/mpi_toolkit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -314405,26 +327044,26 @@ Supplementary repository for: https://github.com/AlgoLab/mp3treesim.""" ;
 
 <https://bio.tools/mpileup> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Sequence trace" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ],
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3020" ;
+            sc:name "Sequence variations" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2885,
         edam:topic_3071,
@@ -314443,26 +327082,26 @@ Supplementary repository for: https://github.com/AlgoLab/mp3treesim.""" ;
 
 <https://bio.tools/mpileup_vcf> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Sequence trace" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence variations" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2885,
         edam:topic_3168 ;
@@ -314479,7 +327118,7 @@ Supplementary repository for: https://github.com/AlgoLab/mp3treesim.""" ;
     biotools:primaryContact "Galaxy Support Team" .
 
 <https://bio.tools/mpiutils> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3307 ;
     sc:description "Do you have thousands of files that you need to run the same program on? Are xargs, GNU parallel, and any of the million workflow management systems not working out for you? This package may be of assistance. It provides a command line tool for parallel execution of many command line tasks on any architecture that supports MPI. It also includes parallel implementations of the Python :func:`map` and :func:`imap` functions and a few handy bits and pieces for logging." ;
@@ -314494,7 +327133,7 @@ Supplementary repository for: https://github.com/AlgoLab/mp3treesim.""" ;
     biotools:primaryContact "Australia" .
 
 <https://bio.tools/mplot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0166,
@@ -314512,7 +327151,7 @@ Supplementary repository for: https://github.com/AlgoLab/mp3treesim.""" ;
     sc:url "http://proteinformatics.charite.de/mplot/" .
 
 <https://bio.tools/mpmap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3053 ;
@@ -314526,7 +327165,7 @@ Supplementary repository for: https://github.com/AlgoLab/mp3treesim.""" ;
     sc:url "https://cran.r-project.org/src/contrib/Archive/mpMap/" .
 
 <https://bio.tools/mpoptag> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2885,
         edam:topic_3053,
@@ -314543,7 +327182,7 @@ Supplementary repository for: https://github.com/AlgoLab/mp3treesim.""" ;
         "Zongli Xu" .
 
 <https://bio.tools/mpp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0199,
@@ -314560,7 +327199,7 @@ Supplementary repository for: https://github.com/AlgoLab/mp3treesim.""" ;
     sc:url "http://cbr.jic.ac.uk/dicks/software/mpp/index.html" .
 
 <https://bio.tools/mppi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0219,
@@ -314584,7 +327223,7 @@ Supplementary repository for: https://github.com/AlgoLab/mp3treesim.""" ;
     sc:url "http://bis.zju.edu.cn/mppi/" .
 
 <https://bio.tools/mpra> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0085,
         edam:topic_0204,
@@ -314604,7 +327243,7 @@ Supplementary repository for: https://github.com/AlgoLab/mp3treesim.""" ;
     biotools:primaryContact "Leslie Myint" .
 
 <https://bio.tools/mpra_design_tools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
@@ -314624,7 +327263,7 @@ Supplementary repository for: https://github.com/AlgoLab/mp3treesim.""" ;
     biotools:primaryContact "Chad A Shaw" .
 
 <https://bio.tools/mpradecoder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0632,
         edam:topic_0769,
@@ -314643,7 +327282,7 @@ Supplementary repository for: https://github.com/AlgoLab/mp3treesim.""" ;
     biotools:primaryContact "Alexey V. Pindyurin" .
 
 <https://bio.tools/mpromdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0219,
         edam:topic_0749,
@@ -314665,7 +327304,7 @@ Supplementary repository for: https://github.com/AlgoLab/mp3treesim.""" ;
     biotools:primaryContact "Ramana V. Davuluri" .
 
 <https://bio.tools/mps6> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0625,
@@ -314689,7 +327328,7 @@ understand structural changes on alylsulfatase B (ASB) caused by Mucopolysacchar
     sc:url "http://mps6-database.org" .
 
 <https://bio.tools/mpsbase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0203,
@@ -314712,7 +327351,7 @@ understand structural changes on alylsulfatase B (ASB) caused by Mucopolysacchar
     sc:url "https://www.ufrgs.br/mpsbase/" .
 
 <https://bio.tools/mpsc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -314728,7 +327367,7 @@ understand structural changes on alylsulfatase B (ASB) caused by Mucopolysacchar
     sc:url "http://www.manchesterproteome.manchester.ac.uk/#/MPSC" .
 
 <https://bio.tools/mpscan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3308 ;
@@ -314743,7 +327382,7 @@ understand structural changes on alylsulfatase B (ASB) caused by Mucopolysacchar
     biotools:primaryContact "Vincent Lefort" .
 
 <https://bio.tools/mpslda-prosvm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0140,
         edam:topic_0780,
@@ -314759,7 +327398,7 @@ understand structural changes on alylsulfatase B (ASB) caused by Mucopolysacchar
     sc:url "https://github.com/QUST-AIBBDRC/MpsLDA-ProSVM/" .
 
 <https://bio.tools/mpss> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0605,
         edam:topic_0659,
@@ -314784,8 +327423,29 @@ if you use data from this page.""" ;
     sc:name "mpss" ;
     sc:url "https://mpss.danforthcenter.org" .
 
+<https://bio.tools/mptevol> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0084,
+        edam:topic_2640,
+        edam:topic_3676 ;
+    sc:citation <https://doi.org/10.1093/BIB/BBAC175>,
+        "pubmed:35598328" ;
+    sc:description "Deciphering clonal dynamics and metastatic routines in a rare patient of synchronous triple-primary tumors and multiple metastases with MPTevol." ;
+    sc:featureList edam:operation_0325,
+        edam:operation_3227,
+        edam:operation_3799 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "MPTevol" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://rpubs.com/cqj_00/MPTevol> ;
+    sc:url "https://github.com/qingjian1991/MPTevol" .
+
 <https://bio.tools/mptheory> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2259,
         edam:topic_3372,
@@ -314802,7 +327462,7 @@ if you use data from this page.""" ;
     biotools:primaryContact "Vincenzo Manca" .
 
 <https://bio.tools/mptherm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0130,
         edam:topic_0199,
@@ -314822,7 +327482,7 @@ MPTherm is a thermodynamic database of membrane proteins and their mutants, cont
     sc:url "http://www.iitm.ac.in/bioinfo/mptherm/" .
 
 <https://bio.tools/mptherm-pred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0130,
         edam:topic_0199,
@@ -314841,10 +327501,10 @@ The stability of membrane proteins differs from globular proteins due to the pre
 
 <https://bio.tools/mpthub> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_2840,
@@ -314861,7 +327521,7 @@ The stability of membrane proteins differs from globular proteins due to the pre
     sc:url "https://github.com/lassisg/mpthub" .
 
 <https://bio.tools/mptopoquerier> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0820 ;
@@ -314878,7 +327538,7 @@ The stability of membrane proteins differs from globular proteins due to the pre
     biotools:primaryContact "Stephen H. White" .
 
 <https://bio.tools/mptp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0084,
@@ -314898,7 +327558,7 @@ The stability of membrane proteins differs from globular proteins due to the pre
         "Tomas Flouri" .
 
 <https://bio.tools/mqf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_3170,
@@ -314922,7 +327582,7 @@ Welcome to khmer: k-mer counting, filtering, and graph traversal FTW!.
     sc:url "https://github.com/dib-lab/2020-paper-mqf-benchmarks" .
 
 <https://bio.tools/mqscore> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3053,
@@ -314939,7 +327599,7 @@ Welcome to khmer: k-mer counting, filtering, and graph traversal FTW!.
     biotools:primaryContact "Tatiana Axenovich" .
 
 <https://bio.tools/mquad> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_2229,
@@ -314956,7 +327616,7 @@ Welcome to khmer: k-mer counting, filtering, and graph traversal FTW!.
         <https://orcid.org/0000-0003-3124-9186> .
 
 <https://bio.tools/mr-corr2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3517 ;
     sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAB646>,
@@ -314971,8 +327631,31 @@ Welcome to khmer: k-mer counting, filtering, and graph traversal FTW!.
         "Windows" ;
     sc:url "https://github.com/QingCheng0218/MR.Corr2" .
 
+<https://bio.tools/mr-mdr> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0625,
+        edam:topic_2269,
+        edam:topic_2885,
+        edam:topic_3517,
+        edam:topic_3974 ;
+    sc:citation <https://doi.org/10.1186/S12859-021-04395-Y>,
+        "pmcid:PMC8489107",
+        "pubmed:34607566" ;
+    sc:description "Spatial rank-based multifactor dimensionality reduction to detect gene-gene interactions for multivariate phenotypes." ;
+    sc:featureList edam:operation_3192,
+        edam:operation_3196,
+        edam:operation_3935 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "MR-MDR" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/statpark/MR-MDR" .
+
 <https://bio.tools/mr-microt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0204 ;
     sc:citation <https://doi.org/10.1145/2618243.2618289> ;
@@ -314987,22 +327670,22 @@ Welcome to khmer: k-mer counting, filtering, and graph traversal FTW!.
 
 <https://bio.tools/mr-mspolygraph> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ],
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3652" ;
+            sc:name "Mass spectrometry spectra" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1233" ;
-            sc:name "Sequence set (protein)" ;
-            sc:sameAs "http://edamontology.org/data_1233" ] ;
+            sc:additionalType "http://edamontology.org/data_1233" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence set (protein)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ],
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_3652" ;
+            sc:name "Peptide identification" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3652" ;
+            sc:name "Mass spectrometry spectra" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -315020,7 +327703,7 @@ Welcome to khmer: k-mer counting, filtering, and graph traversal FTW!.
     sc:url "http://compbio.eecs.wsu.edu/" .
 
 <https://bio.tools/mr-parkinsonism> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3384,
@@ -315042,7 +327725,7 @@ Coronal oblique reconstruction of superior cerebellar peduncles.""" ;
     sc:url "https://mrpi.unicz.it" .
 
 <https://bio.tools/mr-tim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3304,
         edam:topic_3384,
@@ -315060,13 +327743,61 @@ It performs automated segmentation of whole-head T1-weighted MR images in 12 tis
     sc:name "MR-TIM" ;
     sc:url "https://www.nitrc.org/projects/mr-tim" .
 
+<https://bio.tools/mra_toolbox> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_2258,
+        edam:topic_2840,
+        edam:topic_3314,
+        edam:topic_3855 ;
+    sc:citation <https://doi.org/10.1038/S41598-022-13028-0>,
+        "pmcid:PMC9132927",
+        "pubmed:35614210" ;
+    sc:description "A web-based toolbox for predicting mixture toxicity of chemical substances in chemical products." ;
+    sc:featureList edam:operation_3799,
+        edam:operation_3891 ;
+    sc:isAccessibleForFree true ;
+    sc:name "MRA Toolbox" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareVersion "1.0" ;
+    sc:url "https://www.mratoolbox.org" .
+
+<https://bio.tools/mraid> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_2269,
+        edam:topic_2885,
+        edam:topic_3337,
+        edam:topic_3517 ;
+    sc:citation <https://doi.org/10.1101/2021.11.03.21265848> ;
+    sc:description "MRAID(Mendelian Randomization with Automated Instrument Determination),is an R package for efficient statistical inference of two-sample Mendelian Randomization. MRAID takes GWAS summary statistics as inputs to estimate causal effects of one trait on another." ;
+    sc:featureList edam:operation_0282,
+        edam:operation_3435,
+        edam:operation_3659 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "MRAID" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/yuanzhongshang/MRAID" .
+
 <https://bio.tools/mrbayes> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3293 ;
     sc:author "Fredrik Ronquist" ;
     sc:citation <https://doi.org/10.1093/bioinformatics/17.8.754>,
-        "pubmed:11524383" ;
+        <https://doi.org/10.1093/bioinformatics/btg180>,
+        <https://doi.org/10.1093/sysbio/sys029>,
+        "pmcid:PMC3329765",
+        "pubmed:11524383",
+        "pubmed:12912839",
+        "pubmed:22357727" ;
     sc:contributor "Bret Larget",
         "Chi Zhang",
         "Donald Simon",
@@ -315094,18 +327825,8 @@ It performs automated segmentation of whole-head T1-weighted MR images in 12 tis
     sc:softwareVersion "3.2.6" ;
     sc:url "http://nbisweden.github.io/MrBayes/" .
 
-<https://bio.tools/mrbayes_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3305,
-        edam:topic_3517,
-        edam:topic_3855 ;
-    sc:citation <https://doi.org/10.1101/19005868> ;
-    sc:description "> VERY_LOW CONFIDENCE! | > NAME (mrbayes) SIMILAR TO (PUB. DIFFERENT) bio.tools/mrbayes (MrBayes) | > CORRECT NAME OF TOOL COULD ALSO BE 'radial MR-Egger', 'Stan', 'MR-Egger', 'IVW MR-Egger' | Bayesian estimation of IVW and MR-Egger models for two-sample Mendelian randomization studies | Bayesian Summary Data Models for Mendelian Randomization Studies | Bayesian implementation of IVW and MR-Egger models | Install the CRAN version with following code: | remotes::install_github(\"okezie94/mrbayes\", build_opts = c(\"--no-resave-data\", \"--no-manual\"), build_vignettes = TRUE) | Or install the development version from GitHub with:" ;
-    sc:featureList edam:operation_3659 ;
-    sc:name "mrbayes_autogenerated" ;
-    sc:url "https://okezie94.github.io/mrbayes/" .
-
 <https://bio.tools/mrbump> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2814,
@@ -315127,7 +327848,7 @@ It performs automated segmentation of whole-head T1-weighted MR images in 12 tis
     sc:url "http://www.ccp4.ac.uk/MrBUMP/" .
 
 <https://bio.tools/mrbws> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1093/nar/gkq1008> ;
@@ -315142,7 +327863,7 @@ It performs automated segmentation of whole-head T1-weighted MR images in 12 tis
     sc:url "http://bioit.fleming.gr/mrb/data.jsp" .
 
 <https://bio.tools/mrc_image_processing_package> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_1317,
@@ -315163,7 +327884,7 @@ It performs automated segmentation of whole-head T1-weighted MR images in 12 tis
     sc:url "http://www2.mrc-lmb.cam.ac.uk/image2000.html" .
 
 <https://bio.tools/mrcanavar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3577 ;
@@ -315178,7 +327899,7 @@ It performs automated segmentation of whole-head T1-weighted MR images in 12 tis
     biotools:primaryContact "Doscussion Forum" .
 
 <https://bio.tools/mrcfile> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0611,
         edam:topic_1317 ;
@@ -315198,7 +327919,7 @@ This library aims to allow users and developers to read and write standard-compl
     sc:url "https://mrcfile.readthedocs.io/en/latest/readme.html" .
 
 <https://bio.tools/mrcip> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3517 ;
     sc:citation <https://doi.org/10.1093/BIB/BBAB019>,
@@ -315213,7 +327934,7 @@ This library aims to allow users and developers to read and write standard-compl
         "Zhonghua Liu" .
 
 <https://bio.tools/mrd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2533,
@@ -315228,7 +327949,7 @@ This library aims to allow users and developers to read and write standard-compl
     biotools:primaryContact "Lusheng Wang" .
 
 <https://bio.tools/mrdna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0632,
         edam:topic_0654,
@@ -315248,7 +327969,7 @@ Will Kaufhold authored Jan 07, 2020""" ;
     sc:url "https://gitlab.engr.illinois.edu/tbgl/tools/mrdna" .
 
 <https://bio.tools/mrdp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3263,
         edam:topic_3316,
@@ -315268,7 +327989,7 @@ ECMWF 20th Century Reanalysis (ERA-20C)""" ;
     biotools:primaryContact "Ian Foster" .
 
 <https://bio.tools/mredictor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0659,
@@ -315284,7 +328005,7 @@ ECMWF 20th Century Reanalysis (ERA-20C)""" ;
     sc:url "http://mredictor.hugef-research.org/" .
 
 <https://bio.tools/mreps> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0157,
         edam:topic_0199,
@@ -315308,22 +328029,22 @@ ECMWF 20th Century Reanalysis (ERA-20C)""" ;
 
 <https://bio.tools/mres2x> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ],
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:encodingFormat "http://edamontology.org/format_3713" ;
+            sc:name "Mass spectrometry data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ] ;
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:encodingFormat "http://edamontology.org/format_3713" ;
+            sc:name "Mass spectrometry data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ],
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:encodingFormat "http://edamontology.org/format_3652" ;
+            sc:name "Mass spectrometry data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:encodingFormat "http://edamontology.org/format_3713" ;
+            sc:name "Mass spectrometry data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -315338,7 +328059,7 @@ ECMWF 20th Century Reanalysis (ERA-20C)""" ;
     sc:url "https://sourceforge.net/projects/protms/files/mres2x/" .
 
 <https://bio.tools/mrfast> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622 ;
     sc:citation "pubmed:19718026" ;
@@ -315352,7 +328073,7 @@ ECMWF 20th Century Reanalysis (ERA-20C)""" ;
     biotools:primaryContact "Can Alkan" .
 
 <https://bio.tools/mrfseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0203,
@@ -315368,7 +328089,7 @@ ECMWF 20th Century Reanalysis (ERA-20C)""" ;
     sc:url "http://www.cs.ucr.edu/~yyang027/mrfseq.htm" .
 
 <https://bio.tools/mrgsolve> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0202,
         edam:topic_0602,
@@ -315398,7 +328119,7 @@ This website contains (hopefully) helpful vignettes to help you learn and use mr
     sc:url "https://cran.r-project.org/web/packages/mrgsolve/index.html" .
 
 <https://bio.tools/mrhmms> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_2269 ;
@@ -315415,7 +328136,7 @@ This website contains (hopefully) helpful vignettes to help you learn and use mr
         "Yu Zhang" .
 
 <https://bio.tools/mri> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_3304,
@@ -315436,7 +328157,7 @@ This page hosts projectomes produced with NeuroData's MRI Graphs pipeline (m2g).
     sc:url "https://neurodata.io/mri" .
 
 <https://bio.tools/mri-brain-segmentation> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3304,
@@ -315455,7 +328176,7 @@ This page hosts projectomes produced with NeuroData's MRI Graphs pipeline (m2g).
     biotools:primaryContact "Robert Bemis" .
 
 <https://bio.tools/mri-image-brain-tumor-detection> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3304,
@@ -315474,7 +328195,7 @@ This page hosts projectomes produced with NeuroData's MRI Graphs pipeline (m2g).
     biotools:primaryContact "Shazid Mahmood" .
 
 <https://bio.tools/mri-image-snr-computer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3304,
@@ -315494,7 +328215,7 @@ This page hosts projectomes produced with NeuroData's MRI Graphs pipeline (m2g).
     biotools:primaryContact "Yingying Wang, Ph.D." .
 
 <https://bio.tools/mri-segmentation-bias-field-correction> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3304,
@@ -315512,7 +328233,7 @@ This page hosts projectomes produced with NeuroData's MRI Graphs pipeline (m2g).
     biotools:primaryContact "Chunming Li" .
 
 <https://bio.tools/mri-share> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3384,
@@ -315532,7 +328253,7 @@ This page hosts projectomes produced with NeuroData's MRI Graphs pipeline (m2g).
     sc:url "http://www.i-share.fr" .
 
 <https://bio.tools/mries> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3384,
@@ -315554,7 +328275,7 @@ This page hosts projectomes produced with NeuroData's MRI Graphs pipeline (m2g).
     sc:url "https://github.com/SunKaijia0065/MRIES" .
 
 <https://bio.tools/mriml> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3474,
@@ -315574,7 +328295,7 @@ This page hosts projectomes produced with NeuroData's MRI Graphs pipeline (m2g).
     sc:url "https://nfj1380.github.io/mrIML" .
 
 <https://bio.tools/mrireco> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_3303,
         edam:topic_3372,
@@ -315591,7 +328312,7 @@ This page hosts projectomes produced with NeuroData's MRI Graphs pipeline (m2g).
     biotools:primaryContact <https://orcid.org/0000-0002-1589-8517> .
 
 <https://bio.tools/mrlocus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0625,
@@ -315612,7 +328333,7 @@ MRLocus is a statistical method providing Mendelian Randomization analysis per l
     sc:url "https://mikelove.github.io/mrlocus" .
 
 <https://bio.tools/mrmassaydb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -315630,7 +328351,7 @@ MRLocus is a statistical method providing Mendelian Randomization analysis per l
     sc:url "http://mrmassaydb.proteincentre.com/" .
 
 <https://bio.tools/mrmkit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -315650,7 +328371,7 @@ MRMkit: automated data processing for large-scale targeted mass spectrometry."""
     sc:url "https://github.com/MRMkit/MRMkit" .
 
 <https://bio.tools/mrmlm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Library" ;
     sc:applicationSubCategory edam:topic_3053,
@@ -315669,8 +328390,23 @@ Conduct multi-locus genome-wide association study under the framework of multi-l
     sc:softwareVersion "4.0" ;
     sc:url "https://bigd.big.ac.cn/biocode/tools/BT007077" .
 
+<https://bio.tools/mrmodeltest2> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0199 ;
+    sc:citation <https://doi.org/10.1080/10635150490264699>,
+        "pubmed:14965900" ;
+    sc:description "C program for selecting DNA substitution models using PAUP*" ;
+    sc:featureList edam:operation_0550 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "mrmodeltest2" ;
+    sc:operatingSystem "Mac",
+        "Windows" ;
+    sc:url "https://github.com/nylander/MrModeltest2" .
+
 <https://bio.tools/mrmplusgui> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_2640 ;
@@ -315685,7 +328421,7 @@ Conduct multi-locus genome-wide association study under the framework of multi-l
     sc:url "https://bitbucket.org/paiyetan/mrmplusgui" .
 
 <https://bio.tools/mrmr-feature-selection> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3374 ;
     sc:citation <https://doi.org/10.1109/TPAMI.2005.159> ;
@@ -315701,7 +328437,7 @@ Conduct multi-locus genome-wide association study under the framework of multi-l
     biotools:primaryContact "Hanchuan Peng" .
 
 <https://bio.tools/mrmre> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269 ;
     sc:citation "pubmed:23825369" ;
@@ -315716,7 +328452,7 @@ Conduct multi-locus genome-wide association study under the framework of multi-l
     biotools:primaryContact "Benjamin Haibe-Kains" .
 
 <https://bio.tools/mrna_optimiser> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0099,
@@ -315733,7 +328469,7 @@ Conduct multi-locus genome-wide association study under the framework of multi-l
     biotools:primaryContact "Paulo Gaspar" .
 
 <https://bio.tools/mrnaloc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0108,
@@ -315753,7 +328489,7 @@ Conduct multi-locus genome-wide association study under the framework of multi-l
     sc:url "http://proteininformatics.org/mkumar/mrnaloc" .
 
 <https://bio.tools/mrnalocater> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_2229,
@@ -315769,7 +328505,7 @@ Conduct multi-locus genome-wide association study under the framework of multi-l
     biotools:primaryContact "Wei Chen" .
 
 <https://bio.tools/mrp_py> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0130,
         edam:topic_0154,
@@ -315787,7 +328523,7 @@ This program streamlines the process of post-translationally modified residue pa
     sc:url "https://github.com/pgsahrmann/mrp" .
 
 <https://bio.tools/mrpc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -315808,7 +328544,7 @@ This program streamlines the process of post-translationally modified residue pa
         "Md. Bahadur Badsha" .
 
 <https://bio.tools/mrpixel> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Script" ;
     sc:applicationSubCategory edam:topic_0154,
@@ -315828,7 +328564,7 @@ MrPIXEL is a program that enables the energetics of crystal packing to be analys
     sc:url "http://www.crystal.chem.ed.ac.uk/software/mrpixel" .
 
 <https://bio.tools/mrprimerw> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0632,
@@ -315844,7 +328580,7 @@ MrPIXEL is a program that enables the energetics of crystal packing to be analys
     sc:url "http://mrprimerw.com/" .
 
 <https://bio.tools/mrqy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3383,
@@ -315866,7 +328602,7 @@ Two Python scripts (QC.py and QCF.py) are used to generate several tags and nois
     sc:url "http://github.com/ccipd/MRQy" .
 
 <https://bio.tools/mrrobust> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3305,
@@ -315881,7 +328617,7 @@ Two Python scripts (QC.py and QCF.py) are used to generate several tags and nois
     sc:url "https://github.com/remlapmot/mrrobust" .
 
 <https://bio.tools/mrs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078 ;
     sc:citation "pubmed:15980580" ;
@@ -315895,8 +328631,55 @@ Two Python scripts (QC.py and QCF.py) are used to generate several tags and nois
     sc:url "http://mrs.cmbi.ru.nl/" ;
     biotools:primaryContact "M.L. Hekkelman" .
 
+<https://bio.tools/mrscloud> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0593,
+        edam:topic_0602,
+        edam:topic_3172 ;
+    sc:citation <https://doi.org/10.1002/MRM.29370>,
+        "pmcid:PMC9420769",
+        "pubmed:35775808" ;
+    sc:description "A cloud-based spectral simulation tool “MRSCloud,” which allows MRS users to simulate a vendor-specific and sequence-specific basis set online in a convenient and time-efficient manner. This tool can simulate basis sets for GE, Philips, and Siemens MR scanners, including conventional acquisitions and spectral editing schemes with PRESS and semi-LASER localization at 3 T." ;
+    sc:featureList edam:operation_3928 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "MRSCloud" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://braingps.mricloud.org/docs/tutorials/login_mricloud/login_mricloud.html> ;
+    sc:url "https://braingps.mricloud.org" .
+
+<https://bio.tools/mrsd> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3170,
+        edam:topic_3277,
+        edam:topic_3308,
+        edam:topic_3320,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.1016/J.AJHG.2021.12.014>,
+        "pmcid:PMC8874219",
+        "pubmed:35065709" ;
+    sc:description "A quantitative approach for assessing suitability of RNA-seq in the investigation of mis-splicing in Mendelian disease." ;
+    sc:featureList edam:operation_0264,
+        edam:operation_0314,
+        edam:operation_0433,
+        edam:operation_3226,
+        edam:operation_3800 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "MRSD" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://mcgm-mrsd.github.io/" .
+
 <https://bio.tools/mrsfast> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622 ;
     sc:citation <https://doi.org/10.1038/nmeth0810-576>,
@@ -315917,7 +328700,7 @@ Two Python scripts (QC.py and QCF.py) are used to generate several tags and nois
         "Iman Sarrafi" .
 
 <https://bio.tools/mrsfast-ultra> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
@@ -315933,7 +328716,7 @@ Two Python scripts (QC.py and QCF.py) are used to generate several tags and nois
     biotools:primaryContact "Faraz Hach" .
 
 <https://bio.tools/mrvtest> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3053 ;
@@ -315946,7 +328729,7 @@ Two Python scripts (QC.py and QCF.py) are used to generate several tags and nois
     sc:url "http://www.davecurtis.net/dcurtis/software.html" .
 
 <https://bio.tools/ms> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2259,
         edam:topic_3056 ;
@@ -315960,7 +328743,7 @@ Two Python scripts (QC.py and QCF.py) are used to generate several tags and nois
     sc:url "http://home.uchicago.edu/~rhudson1/source/mksamples.html" .
 
 <https://bio.tools/ms-blast> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080 ;
@@ -315975,7 +328758,7 @@ Two Python scripts (QC.py and QCF.py) are used to generate several tags and nois
     sc:url "http://genetics.bwh.harvard.edu/msblast/" .
 
 <https://bio.tools/ms-cleanr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0780,
@@ -315996,7 +328779,7 @@ MS-CleanR use as input MS-DIAL peak list processed in data dependent analysis (D
     sc:url "https://github.com/eMetaboHUB/MS-CleanR" .
 
 <https://bio.tools/ms-dart-seq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0654,
@@ -316020,46 +328803,46 @@ This repository contains the analytical code necessary to reproduce the results
 
 <https://bio.tools/ms-data-core-api> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ],
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:encodingFormat "http://edamontology.org/format_3247" ;
+            sc:name "Mass spectrometry data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ],
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:encodingFormat "http://edamontology.org/format_3681" ;
+            sc:name "Mass spectrometry data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ],
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:encodingFormat "http://edamontology.org/format_3827" ;
+            sc:name "Mass spectrometry data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ],
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:encodingFormat "http://edamontology.org/format_3827" ;
+            sc:name "Mass spectrometry data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ] ;
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:encodingFormat "http://edamontology.org/format_3827" ;
+            sc:name "Mass spectrometry data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ],
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:encodingFormat "http://edamontology.org/format_3681" ;
+            sc:name "Mass spectrometry data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ],
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:encodingFormat "http://edamontology.org/format_3827" ;
+            sc:name "Mass spectrometry data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ],
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:encodingFormat "http://edamontology.org/format_3827" ;
+            sc:name "Mass spectrometry data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ],
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:encodingFormat "http://edamontology.org/format_3827" ;
+            sc:name "Mass spectrometry data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:encodingFormat "http://edamontology.org/format_3004" ;
+            sc:name "Mass spectrometry data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3372,
@@ -316080,8 +328863,31 @@ This repository contains the analytical code necessary to reproduce the results
     sc:softwareVersion "2.0.31" ;
     sc:url "https://github.com/PRIDE-Utilities/ms-data-core-api" .
 
+<https://bio.tools/ms-decipher> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0080,
+        edam:topic_0121,
+        edam:topic_0154,
+        edam:topic_0601,
+        edam:topic_3520 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC014>,
+        "pubmed:35020790" ;
+    sc:description "A user-friendly proteome database search software with an emphasis on deciphering the spectra of O-linked glycopeptides." ;
+    sc:featureList edam:operation_0417,
+        edam:operation_2421,
+        edam:operation_3645,
+        edam:operation_3802 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Apache-2.0" ;
+    sc:name "MS-Decipher" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/DICP-1809/MS-Decipher" .
+
 <https://bio.tools/ms-deconv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121 ;
     sc:citation <https://doi.org/10.1074/mcp.M110.002766> ;
@@ -316097,18 +328903,18 @@ This repository contains the analytical code necessary to reproduce the results
 
 <https://bio.tools/ms-digest> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1056" ;
-            sc:name "Database name" ;
-            sc:sameAs "http://edamontology.org/data_1056" ],
+            sc:additionalType "http://edamontology.org/data_1056" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Database name" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3021" ;
-            sc:name "UniProt accession" ;
-            sc:sameAs "http://edamontology.org/data_3021" ] ;
+            sc:additionalType "http://edamontology.org/data_3021" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "UniProt accession" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1238" ;
-            sc:name "Proteolytic digest" ;
-            sc:sameAs "http://edamontology.org/data_1238" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1238" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Proteolytic digest" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -316126,14 +328932,14 @@ This repository contains the analytical code necessary to reproduce the results
 
 <https://bio.tools/ms-fit> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0944" ;
-            sc:name "Peptide mass fingerprint" ;
-            sc:sameAs "http://edamontology.org/data_0944" ] ;
+            sc:additionalType "http://edamontology.org/data_0944" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Peptide mass fingerprint" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Peptide identification" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -316155,38 +328961,38 @@ This repository contains the analytical code necessary to reproduce the results
 
 <https://bio.tools/ms-gf> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3483" ;
-            sc:name "Spectrum" ;
-            sc:sameAs "http://edamontology.org/data_3483" ],
+            sc:additionalType "http://edamontology.org/data_3483" ;
+            sc:encodingFormat "http://edamontology.org/format_3653" ;
+            sc:name "Spectrum" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1667" ;
-            sc:name "E-value" ;
-            sc:sameAs "http://edamontology.org/data_1667" ],
+            sc:additionalType "http://edamontology.org/data_1233" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence set (protein)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1233" ;
-            sc:name "Sequence set (protein)" ;
-            sc:sameAs "http://edamontology.org/data_1233" ],
+            sc:additionalType "http://edamontology.org/data_1667" ;
+            sc:encodingFormat "http://edamontology.org/format_3247" ;
+            sc:name "E-value" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ] ;
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_3247" ;
+            sc:name "Peptide identification" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1667" ;
-            sc:name "E-value" ;
-            sc:sameAs "http://edamontology.org/data_1667" ],
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_3247" ;
+            sc:name "Peptide identification" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2080" ;
-            sc:name "Database search results" ;
-            sc:sameAs "http://edamontology.org/data_2080" ],
+            sc:additionalType "http://edamontology.org/data_1667" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "E-value" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1667" ;
-            sc:name "E-value" ;
-            sc:sameAs "http://edamontology.org/data_1667" ],
+            sc:additionalType "http://edamontology.org/data_1667" ;
+            sc:encodingFormat "http://edamontology.org/format_3247" ;
+            sc:name "E-value" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2080" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Database search results" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_2269,
@@ -316210,22 +329016,22 @@ This repository contains the analytical code necessary to reproduce the results
 
 <https://bio.tools/ms-gfdb> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3483" ;
-            sc:name "Spectrum" ;
-            sc:sameAs "http://edamontology.org/data_3483" ],
+            sc:additionalType "http://edamontology.org/data_1233" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence set (protein)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1233" ;
-            sc:name "Sequence set (protein)" ;
-            sc:sameAs "http://edamontology.org/data_1233" ] ;
+            sc:additionalType "http://edamontology.org/data_3483" ;
+            sc:encodingFormat "http://edamontology.org/format_3653" ;
+            sc:name "Spectrum" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1669" ;
-            sc:name "P-value" ;
-            sc:sameAs "http://edamontology.org/data_1669" ],
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Peptide identification" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1669" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "P-value" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_2269,
@@ -316246,7 +329052,7 @@ This repository contains the analytical code necessary to reproduce the results
     sc:url "http://proteomics.ucsd.edu/ProteoSAFe/" .
 
 <https://bio.tools/ms-hbm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3304,
@@ -316262,14 +329068,14 @@ This repository contains the analytical code necessary to reproduce the results
 
 <https://bio.tools/ms-isotope> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1957" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -316286,10 +329092,9 @@ This repository contains the analytical code necessary to reproduce the results
 
 <https://bio.tools/ms-lims> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:name "Mass spectrometry data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3071,
@@ -316308,26 +329113,43 @@ This repository contains the analytical code necessary to reproduce the results
     sc:url "https://github.com/compomics/ms-lims" ;
     biotools:primaryContact "Lennart Martens" .
 
+<https://bio.tools/ms-mda> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0749,
+        edam:topic_3419,
+        edam:topic_3473 ;
+    sc:citation <https://doi.org/10.3389/FNINS.2021.778488>,
+        "pmcid:PMC8688841",
+        "pubmed:34949983" ;
+    sc:description "Multisource Marginal Distribution Adaptation for Cross-Subject and Cross-Session EEG Emotion Recognition." ;
+    sc:featureList edam:operation_0303,
+        edam:operation_3435,
+        edam:operation_3891 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "MS-MDA" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/VoiceBeer/MS-MDA" .
+
 <https://bio.tools/ms-mint> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
-    sc:additionalType "Desktop application",
-        "Web application",
-        "Workbench" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3172 ;
-    sc:description """Browser-based application for interactive processing of large-scale metabolomics (MS1) data. Developed by the Lewis Research Group at the University of Calgary in Alberta, Canada.
-
-The Metabolomics Integrator (MINT)) is a post-processing tool for liquid chromatography-mass spectrometry (LCMS) based metabolomics. Metabolomics is the study of all metabolites (small chemical compounds) in a biological sample e.g. from bacteria or a human blood sample. The metabolites can be used to define biomarkers used in medicine to find treatments for diseases or for the development of diagnostic tests or for the identification of pathogens such as methicillin resistant Staphylococcus aureus (MRSA).""" ;
+    sc:description "Python library for large-cohort metabolomics (MS1) processing." ;
     sc:isAccessibleForFree true ;
-    sc:license "MIT" ;
+    sc:license "Apache-2.0" ;
     sc:name "MINT (Metabolomics Integrator)" ;
     sc:operatingSystem "Linux",
         "Mac",
         "Windows" ;
-    sc:softwareHelp <https://sorenwacker.github.io/ms-mint/> ;
-    sc:url "https://github.com/sorenwacke/ms-mint" .
+    sc:softwareHelp <https://lewisresearchgroup.github.io/ms-mint/> ;
+    sc:url "https://github.com/LewisResearchGroup/ms-mint" .
 
 <https://bio.tools/ms-peaks-alignment> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3314,
@@ -316348,14 +329170,14 @@ The Metabolomics Integrator (MINT)) is a post-processing tool for liquid chromat
 
 <https://bio.tools/ms-spectre> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3654" ;
+            sc:name "Mass spectrometry spectra" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0944" ;
-            sc:name "Peptide mass fingerprint" ;
-            sc:sameAs "http://edamontology.org/data_0944" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0944" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Peptide mass fingerprint" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -316373,7 +329195,7 @@ The Metabolomics Integrator (MINT)) is a post-processing tool for liquid chromat
     sc:url "http://sourceforge.net/projects/ms-spectre" .
 
 <https://bio.tools/ms1searchpy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121 ;
     sc:citation <https://doi.org/10.1021/acs.analchem.9b05095>,
@@ -316388,7 +329210,7 @@ The Metabolomics Integrator (MINT)) is a post-processing tool for liquid chromat
     sc:url "https://github.com/markmipt/ms1searchpy" .
 
 <https://bio.tools/ms2ai> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -316407,7 +329229,7 @@ Liquid-chromatography mass-spectrometry (LC-MS) is the established standard for
     sc:url "https://gitlab.com/roettgerlab/ms2ai" .
 
 <https://bio.tools/ms2compound> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_3172,
@@ -316422,7 +329244,7 @@ Liquid-chromatography mass-spectrometry (LC-MS) is the established standard for
     sc:url "https://github.com/beherasan/MS2Compound" .
 
 <https://bio.tools/ms2deepscore> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3172,
@@ -316440,7 +329262,7 @@ Liquid-chromatography mass-spectrometry (LC-MS) is the established standard for
     biotools:primaryContact <https://orcid.org/0000-0002-3535-9406> .
 
 <https://bio.tools/ms2planner> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3047,
@@ -316464,7 +329286,7 @@ Liquid-chromatography mass-spectrometry (LC-MS) is the established standard for
     sc:url "https://github.com/mohimanilab/MS2Planner" .
 
 <https://bio.tools/ms2preproc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -316476,8 +329298,31 @@ Liquid-chromatography mass-spectrometry (LC-MS) is the established standard for
     sc:softwareHelp <http://kirchnerlab.github.io/libmgf/doc/html/index.html> ;
     sc:url "http://kirchnerlab.github.com/libmgf" .
 
+<https://bio.tools/ms2rescore> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0121,
+        edam:topic_0154,
+        edam:topic_2830,
+        edam:topic_3520,
+        edam:topic_3922 ;
+    sc:citation <https://doi.org/10.1016/J.MCPRO.2022.100266>,
+        "pubmed:35803561" ;
+    sc:description "Sensitive PSM rescoring with predicted MS² peak intensities using MS²PIP, DeepLC, and Percolator." ;
+    sc:featureList edam:operation_0252,
+        edam:operation_3631,
+        edam:operation_3767 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Apache-2.0" ;
+    sc:name "MS2Rescore" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://compomics.github.io/projects/ms2rescore> ;
+    sc:url "https://github.com/compomics/ms2rescore" .
+
 <https://bio.tools/ms_align> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654,
@@ -316495,7 +329340,7 @@ Liquid-chromatography mass-spectrometry (LC-MS) is the established standard for
         "Sèverine Bérard" .
 
 <https://bio.tools/ms_dial> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0153,
         edam:topic_3172,
@@ -316517,7 +329362,7 @@ Liquid-chromatography mass-spectrometry (LC-MS) is the established standard for
         "Makoto Arita" .
 
 <https://bio.tools/ms_piano> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -316539,38 +329384,38 @@ Liquid-chromatography mass-spectrometry (LC-MS) is the established standard for
 
 <https://bio.tools/msa> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1984" ;
+            sc:name "Sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ],
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_1948" ;
+            sc:name "Protein sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:encodingFormat "http://edamontology.org/format_1948" ;
+            sc:name "Nucleic acid sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1711" ;
-            sc:name "Sequence alignment image" ;
-            sc:sameAs "http://edamontology.org/data_1711" ],
+            sc:additionalType "http://edamontology.org/data_0867" ;
+            sc:encodingFormat "http://edamontology.org/format_1997" ;
+            sc:name "Sequence alignment report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ],
+            sc:additionalType "http://edamontology.org/data_0850" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence set" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0850" ;
-            sc:name "Sequence set" ;
-            sc:sameAs "http://edamontology.org/data_0850" ],
+            sc:additionalType "http://edamontology.org/data_1270" ;
+            sc:encodingFormat "http://edamontology.org/format_2305" ;
+            sc:name "Feature table" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1270" ;
-            sc:name "Feature table" ;
-            sc:sameAs "http://edamontology.org/data_1270" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1984" ;
+            sc:name "Sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0867" ;
-            sc:name "Sequence alignment report" ;
-            sc:sameAs "http://edamontology.org/data_0867" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1711" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Sequence alignment image" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -316603,28 +329448,88 @@ Liquid-chromatography mass-spectrometry (LC-MS) is the established standard for
     sc:url "http://msa.biojs.net" ;
     biotools:primaryContact "Ulrich Bodenhofer" .
 
+<https://bio.tools/msa2dist> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Library" ;
+    sc:applicationSubCategory edam:topic_0080,
+        edam:topic_3299,
+        edam:topic_3945 ;
+    sc:description "R/Bioconductor package MSA2dist calculates pairwise distances between all sequences of a DNAStringSet or a AAStringSet using a custom score matrix and conducts codon based analysis. It uses scoring matrices to be used in these pairwise distance calcualtions which can be adapted to any scoring for DNA or AA characters. E.g. by using literal distances MSA2dist calcualtes pairwise IUPAC distances." ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "MSA2dist" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://bioconductor.org/packages/release/bioc/vignettes/MSA2dist/inst/doc/MSA2dist.html> ;
+    sc:softwareVersion "1.0.0",
+        "1.1.7" ;
+    sc:url "http://bioconductor.org/packages/release/bioc/html/MSA2dist.html" ;
+    biotools:primaryContact "Kristian Ullrich" .
+
+<https://bio.tools/msa_signature_attribution> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0199,
+        edam:topic_0769,
+        edam:topic_2640 ;
+    sc:citation <https://doi.org/10.1186/S12859-021-04450-8>,
+        "pmcid:PMC8567580",
+        "pubmed:34736398" ;
+    sc:description "Mutational signature attribution with confidence based on simulations" ;
+    sc:featureList edam:operation_3227,
+        edam:operation_3435 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "MSA" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://gitlab.com/s.senkin/MSA" .
+
+<https://bio.tools/msac> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_3047,
+        edam:topic_3520 ;
+    sc:citation <https://doi.org/10.1021/ACS.JCIM.1C00579>,
+        "pubmed:34842435" ;
+    sc:description "The Molecular Spectrometry Adduct Calculator (MSAC) calculates the m/z of potential adducts from given compound m/z." ;
+    sc:featureList edam:operation_3627,
+        edam:operation_3767,
+        edam:operation_3860 ;
+    sc:isAccessibleForFree true ;
+    sc:license "BSD-2-Clause" ;
+    sc:name "MSAC" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/pnnl/MSAC" .
+
 <https://bio.tools/msaccess> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ],
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3654" ;
+            sc:name "Mass spectrometry spectra" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_3655" ;
+            sc:name "Peptide identification" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ],
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Mass spectrometry spectra" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ],
+            sc:additionalType "http://edamontology.org/data_0942" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "2D PAGE image" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0942" ;
-            sc:name "2D PAGE image" ;
-            sc:sameAs "http://edamontology.org/data_0942" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Peptide identification" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3382,
@@ -316642,7 +329547,7 @@ Liquid-chromatography mass-spectrometry (LC-MS) is the established standard for
     sc:url "http://proteowizard.sourceforge.net/tools/msaccess.html" .
 
 <https://bio.tools/msacquisitionsimulator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520,
@@ -316659,18 +329564,18 @@ Liquid-chromatography mass-spectrometry (LC-MS) is the established standard for
 
 <https://bio.tools/msalign> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ],
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_3655" ;
+            sc:name "Peptide identification" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ] ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3654" ;
+            sc:name "Mass spectrometry spectra" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1916" ;
-            sc:name "Alignment" ;
-            sc:sameAs "http://edamontology.org/data_1916" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1916" ;
+            sc:encodingFormat "http://edamontology.org/format_1921" ;
+            sc:name "Alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0083,
         edam:topic_0121,
@@ -316687,14 +329592,14 @@ Liquid-chromatography mass-spectrometry (LC-MS) is the established standard for
 
 <https://bio.tools/msalign2> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3654" ;
+            sc:name "Mass spectrometry spectra" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1916" ;
-            sc:name "Alignment" ;
-            sc:sameAs "http://edamontology.org/data_1916" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1916" ;
+            sc:encodingFormat "http://edamontology.org/format_3654" ;
+            sc:name "Alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3172,
@@ -316710,7 +329615,7 @@ Liquid-chromatography mass-spectrometry (LC-MS) is the established standard for
     sc:url "http://www.ms-utils.org/msalign2/index.html" .
 
 <https://bio.tools/msap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0769,
@@ -316727,7 +329632,7 @@ Mutational signature attribution with confidence based on simulations.""" ;
     sc:url "https://gitlab.com/s.senkin/MSA" .
 
 <https://bio.tools/msaprobs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btw558> ;
@@ -316742,7 +329647,7 @@ Mutational signature attribution with confidence based on simulations.""" ;
     sc:url "http://msaprobs.sourceforge.net/homepage.htm#latest" .
 
 <https://bio.tools/msaprobs-mpi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3168,
@@ -316763,7 +329668,7 @@ MSAProbs-MPI is a parallelization of MSAProbs (v0.9.7) using MPI for distributed
     sc:url "http://msaprobs.sourceforge.net" .
 
 <https://bio.tools/msatcommander> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0632,
         edam:topic_0654,
@@ -316781,26 +329686,26 @@ MSAProbs-MPI is a parallelization of MSAProbs (v0.9.7) using MPI for distributed
 
 <https://bio.tools/msaviewer> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1984" ;
+            sc:name "Sequence alignment" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0850" ;
-            sc:name "Sequence set" ;
-            sc:sameAs "http://edamontology.org/data_0850" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1984" ;
+            sc:name "Sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1270" ;
-            sc:name "Feature table" ;
-            sc:sameAs "http://edamontology.org/data_1270" ],
+            sc:additionalType "http://edamontology.org/data_1270" ;
+            sc:encodingFormat "http://edamontology.org/format_2305" ;
+            sc:name "Feature table" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1711" ;
-            sc:name "Sequence alignment image" ;
-            sc:sameAs "http://edamontology.org/data_1711" ],
+            sc:additionalType "http://edamontology.org/data_1711" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Sequence alignment image" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0850" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence set" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0160 ;
@@ -316828,7 +329733,7 @@ MSAProbs-MPI is a parallelization of MSAProbs (v0.9.7) using MPI for distributed
     sc:url "http://msa.biojs.net" .
 
 <https://bio.tools/msavolve> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -316846,18 +329751,15 @@ MSAProbs-MPI is a parallelization of MSAProbs (v0.9.7) using MPI for distributed
 
 <https://bio.tools/msbar> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ],
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -316887,7 +329789,7 @@ MSAProbs-MPI is a parallelization of MSAProbs (v0.9.7) using MPI for distributed
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/msbar.html" .
 
 <https://bio.tools/msbayespro> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0121,
@@ -316903,7 +329805,7 @@ MSAProbs-MPI is a parallelization of MSAProbs (v0.9.7) using MPI for distributed
     sc:url "http://darwin.informatics.indiana.edu/yonli/proteininfer/" .
 
 <https://bio.tools/msbe> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2269,
@@ -316919,7 +329821,7 @@ MSAProbs-MPI is a parallelization of MSAProbs (v0.9.7) using MPI for distributed
     biotools:primaryContact "Lusheng Wang" .
 
 <https://bio.tools/msbmf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0634,
@@ -316940,7 +329842,7 @@ An international forum for researchers and educators in the life sciences, cover
     sc:url "https://github.com/BioinformaticsCSU/MSBMF" .
 
 <https://bio.tools/msc_tree_resampling> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0194,
         edam:topic_2269,
@@ -316959,7 +329861,7 @@ An international forum for researchers and educators in the life sciences, cover
     biotools:primaryContact "Daniel Sloan" .
 
 <https://bio.tools/mscdpb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_3169 ;
@@ -316973,7 +329875,7 @@ An international forum for researchers and educators in the life sciences, cover
     sc:url "http://121.5.71.120/mscDPB/" .
 
 <https://bio.tools/mscentipede> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0749 ;
     sc:citation <https://doi.org/10.1371/journal.pone.0138030> ;
@@ -316988,7 +329890,7 @@ An international forum for researchers and educators in the life sciences, cover
     sc:url "https://github.com/rajanil/msCentipede" .
 
 <https://bio.tools/mscfs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0659,
@@ -317009,7 +329911,7 @@ An international forum for researchers and educators in the life sciences, cover
     sc:url "https://github.com/CJNabla/MultiSourcCFS" .
 
 <https://bio.tools/msclassifier> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0140,
         edam:topic_2640,
@@ -317026,7 +329928,7 @@ MSclassifier classifies instances using median-supplement machine learning metho
     sc:url "https://nweb.gimpa.edu.gh/schools/school-of-technology/software/MSclassifier/" .
 
 <https://bio.tools/mscltoolbox> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3179 ;
     sc:description "MSCLtoolbox (The MSCL Analyst’s Toolbox) includes a set of scripts accessible as either a customized menu item (Windows) or as stand alone scripts (Mac) for the analysis of Affymetrix gene chip data. The scripts are run in the JMP statistical package, see below. Also available in the toolbox are GCOS database access scripts specific for Affymetrix." ;
@@ -317041,7 +329943,7 @@ MSclassifier classifies instances using median-supplement machine learning metho
     sc:url "http://abs.cit.nih.gov/MSCLtoolbox/" .
 
 <https://bio.tools/msclust> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0099,
@@ -317058,7 +329960,7 @@ MSclassifier classifies instances using median-supplement machine learning metho
     sc:url "http://zhaocenter.org/software/#Genomic_Protein_Sequence_Analysis" .
 
 <https://bio.tools/mscnmf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2229,
@@ -317077,14 +329979,14 @@ MSclassifier classifies instances using median-supplement machine learning metho
 
 <https://bio.tools/msconvert> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrum" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3654" ;
+            sc:name "Mass spectrum" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrum" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3654" ;
+            sc:name "Mass spectrum" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -317106,7 +330008,7 @@ MSclassifier classifies instances using median-supplement machine learning metho
     biotools:primaryContact "Matt Chambers" .
 
 <https://bio.tools/mscquartets> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_2269,
@@ -317124,7 +330026,7 @@ Analyzing Gene Tree Quartets under the Multi-Species Coalescent.""" ;
     sc:url "https://CRAN.R-project.org/package=MSCquartets" .
 
 <https://bio.tools/mscquartetsr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_2269,
@@ -317142,10 +330044,10 @@ Analyzing Gene Tree Quartets under the Multi-Species Coalescent.""" ;
 
 <https://bio.tools/msd_file_reader> a sc:SoftwareApplication ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -317160,7 +330062,7 @@ Analyzing Gene Tree Quartets under the Multi-Species Coalescent.""" ;
     sc:url "http://www.quadtechassociates.com/freeware.html" .
 
 <https://bio.tools/msea> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0602,
@@ -317179,7 +330081,7 @@ Analyzing Gene Tree Quartets under the Multi-Species Coalescent.""" ;
     biotools:primaryContact "Jeff Xia" .
 
 <https://bio.tools/msf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0130,
         edam:topic_0736,
@@ -317197,10 +330099,10 @@ Analyzing Gene Tree Quartets under the Multi-Species Coalescent.""" ;
 
 <https://bio.tools/msfilereader_python_bindings> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3712" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3520 ;
     sc:description "Python bindings for the (non-free) ThermoFisher Scientific MSFileReader." ;
@@ -317214,14 +330116,13 @@ Analyzing Gene Tree Quartets under the Multi-Species Coalescent.""" ;
 
 <https://bio.tools/msfragger> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3483" ;
-            sc:name "Spectrum" ;
-            sc:sameAs "http://edamontology.org/data_3483" ] ;
+            sc:additionalType "http://edamontology.org/data_3483" ;
+            sc:encodingFormat "http://edamontology.org/format_3245" ;
+            sc:name "Spectrum" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2080" ;
-            sc:name "Database search results" ;
-            sc:sameAs "http://edamontology.org/data_2080" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2080" ;
+            sc:name "Database search results" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0601,
@@ -317236,7 +330137,7 @@ Analyzing Gene Tree Quartets under the Multi-Species Coalescent.""" ;
     biotools:primaryContact "Alexey Nesvizhskii" .
 
 <https://bio.tools/msgbsr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0625,
@@ -317256,22 +330157,22 @@ Analyzing Gene Tree Quartets under the Multi-Species Coalescent.""" ;
 
 <https://bio.tools/msgfdb2pepxml> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ],
+            sc:additionalType "http://edamontology.org/data_1233" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence set (protein)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1233" ;
-            sc:name "Sequence set (protein)" ;
-            sc:sameAs "http://edamontology.org/data_1233" ],
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3654" ;
+            sc:name "Mass spectrometry spectra" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Peptide identification" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_3655" ;
+            sc:name "Peptide identification" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -317287,7 +330188,7 @@ Analyzing Gene Tree Quartets under the Multi-Species Coalescent.""" ;
     sc:url "http://ms-utils.org/msgfdb2pepxml/index.html" .
 
 <https://bio.tools/msgfgui> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3365,
@@ -317308,7 +330209,7 @@ Analyzing Gene Tree Quartets under the Multi-Species Coalescent.""" ;
     biotools:primaryContact "Thomas Lin Pedersen" .
 
 <https://bio.tools/msgfplus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0108,
@@ -317328,7 +330229,7 @@ Analyzing Gene Tree Quartets under the Multi-Species Coalescent.""" ;
     biotools:primaryContact "Thomas Lin Pedersen" .
 
 <https://bio.tools/msgl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_2640,
@@ -317346,18 +330247,18 @@ Analyzing Gene Tree Quartets under the Multi-Species Coalescent.""" ;
 
 <https://bio.tools/msgraph> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3245" ;
+            sc:name "Mass spectrometry spectra" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ],
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Mass spectrometry spectra" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3466" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -317375,7 +330276,7 @@ Analyzing Gene Tree Quartets under the Multi-Species Coalescent.""" ;
     sc:url "http://msgraph.sourceforge.net/" .
 
 <https://bio.tools/mshot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2259,
         edam:topic_3056 ;
@@ -317390,7 +330291,7 @@ Analyzing Gene Tree Quartets under the Multi-Species Coalescent.""" ;
     sc:url "https://uchicago.app.box.com/s/l3e5uf13tikfjm7e1il1eujitlsjdx13" .
 
 <https://bio.tools/msi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0804,
         edam:topic_2229,
@@ -317405,7 +330306,7 @@ Analyzing Gene Tree Quartets under the Multi-Species Coalescent.""" ;
     biotools:primaryContact "Faheem Mitha" .
 
 <https://bio.tools/msi-r> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3172,
@@ -317427,7 +330328,7 @@ This repository contains the python script performing the recalibration of mass
     sc:url "https://github.com/LaRoccaRaphael/MSI_recalibration" .
 
 <https://bio.tools/msi_mass_spectrometry> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0637,
@@ -317451,7 +330352,7 @@ This repository contains the python script performing the recalibration of mass
     sc:url "https://msi.happy-dev.fr/" .
 
 <https://bio.tools/msifinder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_2885,
@@ -317471,7 +330372,7 @@ This repository contains the python script performing the recalibration of mass
         "Haijun Wang" .
 
 <https://bio.tools/msight> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3382,
@@ -317490,14 +330391,14 @@ This repository contains the python script performing the recalibration of mass
 
 <https://bio.tools/msimageview> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3710" ;
+            sc:name "Mass spectrometry spectra" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3591" ;
+            sc:name "Image" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3383,
@@ -317514,7 +330415,7 @@ This repository contains the python script performing the recalibration of mass
     sc:url "https://ms-imaging.org/wp/msimageview/" .
 
 <https://bio.tools/msinspect> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0121 ;
     sc:citation <https://doi.org/10.1021/pr900169w> ;
@@ -317526,22 +330427,22 @@ This repository contains the python script performing the recalibration of mass
 
 <https://bio.tools/msireader> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ],
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:encodingFormat "http://edamontology.org/format_3654" ;
+            sc:name "Mass spectrometry data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ] ;
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3654" ;
+            sc:name "Image" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ],
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3620" ;
+            sc:name "Image" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3620" ;
+            sc:name "Mass spectrometry spectra" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3382,
@@ -317564,7 +330465,7 @@ This repository contains the python script performing the recalibration of mass
     sc:url "http://www4.ncsu.edu/~dcmuddim/msireader.html" .
 
 <https://bio.tools/msisensor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0654,
@@ -317580,7 +330481,7 @@ This repository contains the python script performing the recalibration of mass
         "Kai Ye" .
 
 <https://bio.tools/msisensor-ct> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_2885,
@@ -317600,7 +330501,7 @@ MSIsensor-ct is a novel method based machine learning, which can accurately dete
     sc:url "https://github.com/niu-lab/MSIsensor-ct" .
 
 <https://bio.tools/msisensor-pro> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0622,
@@ -317617,7 +330518,7 @@ MSIsensor-pro is an updated version of msisensor. MSIsensor-pro evaluates Micros
     sc:url "https://github.com/xjtu-omics/msisensor-pro" .
 
 <https://bio.tools/msite> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0154,
@@ -317632,7 +330533,7 @@ MSIsensor-pro is an updated version of msisensor. MSIsensor-pro evaluates Micros
     biotools:primaryContact "Wanda Sicinska" .
 
 <https://bio.tools/msiwarp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_3382,
@@ -317653,7 +330554,7 @@ MSIWarp is a flexible tool to perform mass alignment of Mass Spectrometry Imagin
     sc:url "https://github.com/horvatovichlab/MSIWarp" .
 
 <https://bio.tools/msk-kp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0622,
@@ -317675,7 +330576,7 @@ Metabolic Disorders Knowledge Portal.
     sc:url "http://mskkp.org/" .
 
 <https://bio.tools/mskcc-cgds-cancer-genomics-toolbox> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0622,
@@ -317693,7 +330594,7 @@ Metabolic Disorders Knowledge Portal.
     biotools:primaryContact "Erik Larsson" .
 
 <https://bio.tools/msl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3068 ;
     sc:citation <https://doi.org/10.12688/f1000research.7329.3> ;
@@ -317707,7 +330608,7 @@ Metabolic Disorders Knowledge Portal.
     biotools:primaryContact "Zeeshan Ahmed" .
 
 <https://bio.tools/msldock> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2275,
         edam:topic_3336 ;
@@ -317723,8 +330624,32 @@ Metabolic Disorders Knowledge Portal.
     sc:url "https://github.com/lcmeteor/MSLDOCK" ;
     biotools:primaryContact <https://orcid.org/0000-0002-9824-4294> .
 
+<https://bio.tools/mslibrarian> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0080,
+        edam:topic_0121,
+        edam:topic_0154,
+        edam:topic_0769,
+        edam:topic_3520 ;
+    sc:citation <https://doi.org/10.1021/ACS.JPROTEOME.1C00796>,
+        "pmcid:PMC8822486",
+        "pubmed:35042333" ;
+    sc:description "Optimized Predicted Spectral Libraries for Data-Independent Acquisition Proteomics." ;
+    sc:featureList edam:operation_3630,
+        edam:operation_3633,
+        edam:operation_3801 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "MSLibrarian" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://github.com/MarcIsak/MSLibrarian/wiki/> ;
+    sc:url "https://github.com/MarcIsak/MSLibrarian" .
+
 <https://bio.tools/msmbuilder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0176,
         edam:topic_2269,
@@ -317742,7 +330667,7 @@ Metabolic Disorders Knowledge Portal.
     biotools:primaryContact "Robert T. McGibbon" .
 
 <https://bio.tools/msmc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0194 ;
     sc:citation <https://doi.org/10.1038/ng.3015> ;
@@ -317756,7 +330681,7 @@ Metabolic Disorders Knowledge Portal.
     sc:url "https://github.com/stschiff/msmc" .
 
 <https://bio.tools/msms> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2259,
         edam:topic_3056 ;
@@ -317772,22 +330697,22 @@ Metabolic Disorders Knowledge Portal.
 
 <https://bio.tools/msmseda> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ] ;
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:encodingFormat "http://edamontology.org/format_3245" ;
+            sc:name "Mass spectrometry data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ],
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Image" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ],
+            sc:additionalType "http://edamontology.org/data_1636" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Heat map" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1636" ;
-            sc:name "Heat map" ;
-            sc:sameAs "http://edamontology.org/data_1636" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -317813,18 +330738,18 @@ Metabolic Disorders Knowledge Portal.
 
 <https://bio.tools/msmstests> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ] ;
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:encodingFormat "http://edamontology.org/format_3245" ;
+            sc:name "Mass spectrometry data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ],
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Plot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Image" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -317848,7 +330773,7 @@ Metabolic Disorders Knowledge Portal.
     biotools:primaryContact "Josep Gregori i Font" .
 
 <https://bio.tools/msnbase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -317871,7 +330796,7 @@ Metabolic Disorders Knowledge Portal.
     biotools:primaryContact <http://orcid.org/0000-0002-1520-2268> .
 
 <https://bio.tools/msnid> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -317890,8 +330815,33 @@ Metabolic Disorders Knowledge Portal.
     sc:url "http://bioconductor.org/packages/release/bioc/html/MSnID.html" ;
     biotools:primaryContact "Vlad Petyuk" .
 
+<https://bio.tools/msnovelist> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0153,
+        edam:topic_0154,
+        edam:topic_3172,
+        edam:topic_3474,
+        edam:topic_3520 ;
+    sc:citation <https://doi.org/10.1038/S41592-022-01486-3>,
+        "pmcid:PMC9262714",
+        "pubmed:35637304" ;
+    sc:description "De novo structure generation from mass spectra." ;
+    sc:featureList edam:operation_0476,
+        edam:operation_3431,
+        edam:operation_3454,
+        edam:operation_3860,
+        edam:operation_4009 ;
+    sc:isAccessibleForFree true ;
+    sc:license "AGPL-3.0" ;
+    sc:name "MSNovelist" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/meowcat/MSNovelist" .
+
 <https://bio.tools/msoar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3053 ;
@@ -317906,7 +330856,7 @@ Metabolic Disorders Knowledge Portal.
     sc:url "http://msoar.cs.ucr.edu/" .
 
 <https://bio.tools/msound> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3452,
@@ -317921,7 +330871,7 @@ mSOUND is an open-source toolbox written in MATLAB.""" ;
     sc:url "https://m-sound.github.io/mSOUND/home" .
 
 <https://bio.tools/msp-htprimer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0632,
@@ -317939,7 +330889,7 @@ mSOUND is an open-source toolbox written in MATLAB.""" ;
     biotools:primaryContact "Ram Vinay Pandey" .
 
 <https://bio.tools/mspack> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3172,
@@ -317959,7 +330909,7 @@ mSOUND is an open-source toolbox written in MATLAB.""" ;
     sc:url "https://github.com/fhanau/mspack" .
 
 <https://bio.tools/mspc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_3070,
@@ -317976,7 +330926,7 @@ mSOUND is an open-source toolbox written in MATLAB.""" ;
     biotools:primaryContact "Vahid Jalili" .
 
 <https://bio.tools/mspc-morpheus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_2814,
@@ -317994,7 +330944,7 @@ mSOUND is an open-source toolbox written in MATLAB.""" ;
     biotools:primaryContact "Richard D. Vierstra" .
 
 <https://bio.tools/mspecs_editor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3172,
         edam:topic_3520 ;
@@ -318008,7 +330958,7 @@ mSOUND is an open-source toolbox written in MATLAB.""" ;
     biotools:primaryContact "Dr. Dietmar Schomburg" .
 
 <https://bio.tools/mspectraai> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
         edam:topic_3172,
@@ -318030,7 +330980,7 @@ MSpectraAI is a free, user-friendly and comprehensive software for mining and cl
     sc:url "https://github.com/wangshisheng/MSpectraAI" .
 
 <https://bio.tools/mspike> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:description "MSPIKE performs neural spike pattern analysis on extracellular potentials acquired with TDT's System3." ;
     sc:featureList edam:operation_0380 ;
@@ -318044,7 +330994,7 @@ MSpectraAI is a free, user-friendly and comprehensive software for mining and cl
     biotools:primaryContact "Hazem Baqaen" .
 
 <https://bio.tools/mspire> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3473,
@@ -318062,14 +331012,14 @@ MSpectraAI is a free, user-friendly and comprehensive software for mining and cl
 
 <https://bio.tools/mspire-simulator> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:encodingFormat "http://edamontology.org/format_3244" ;
+            sc:name "Mass spectrometry data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520,
@@ -318087,14 +331037,14 @@ MSpectraAI is a free, user-friendly and comprehensive software for mining and cl
 
 <https://bio.tools/mspire_mspire-sequest> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3244" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3655" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -318107,7 +331057,7 @@ MSpectraAI is a free, user-friendly and comprehensive software for mining and cl
     sc:url "http://mspire.rubyforge.org" .
 
 <https://bio.tools/msplit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154 ;
@@ -318123,7 +331073,7 @@ MSpectraAI is a free, user-friendly and comprehensive software for mining and cl
     sc:url "http://proteomics.ucsd.edu/software-tools/msplit/" .
 
 <https://bio.tools/mspls> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0602,
@@ -318143,7 +331093,7 @@ Simulation studies for sparse partial least squares path modeling.""" ;
     sc:url "http://uva.csala.me/mspls" .
 
 <https://bio.tools/mspolygraph> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -318156,7 +331106,7 @@ Simulation studies for sparse partial least squares path modeling.""" ;
     sc:url "http://omics.pnl.gov/software/MSPolygraph.php" .
 
 <https://bio.tools/msprep> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2259,
         edam:topic_3172 ;
@@ -318171,7 +331121,7 @@ Simulation studies for sparse partial least squares path modeling.""" ;
     biotools:primaryContact "Grant Hughes" .
 
 <https://bio.tools/msprime> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3056 ;
     sc:citation <https://doi.org/10.1371/journal.pcbi.1004842> ;
@@ -318184,7 +331134,7 @@ Simulation studies for sparse partial least squares path modeling.""" ;
     sc:url "https://tskit.dev/msprime" .
 
 <https://bio.tools/msprogene> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0602,
@@ -318202,7 +331152,7 @@ Simulation studies for sparse partial least squares path modeling.""" ;
     biotools:primaryContact "Bernhard Y. Renard" .
 
 <https://bio.tools/mspurity> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -318223,22 +331173,21 @@ Simulation studies for sparse partial least squares path modeling.""" ;
 
 <https://bio.tools/msqrob> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0857" ;
-            sc:name "Sequence search results" ;
-            sc:sameAs "http://edamontology.org/data_0857" ],
+            sc:additionalType "http://edamontology.org/data_0857" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Sequence search results" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2531" ;
-            sc:name "Experiment report" ;
-            sc:sameAs "http://edamontology.org/data_2531" ] ;
+            sc:additionalType "http://edamontology.org/data_2531" ;
+            sc:encodingFormat "http://edamontology.org/format_3468" ;
+            sc:name "Experiment report" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ],
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:name "Plot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_3468" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121 ;
     sc:author <http://orcid.org/0000-0002-8285-7766> ;
@@ -318264,7 +331213,7 @@ Simulation studies for sparse partial least squares path modeling.""" ;
         "Lieven Clement" .
 
 <https://bio.tools/msqt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0654,
@@ -318283,10 +331232,10 @@ Simulation studies for sparse partial least squares path modeling.""" ;
 
 <https://bio.tools/msquant> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3713" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -318299,8 +331248,27 @@ Simulation studies for sparse partial least squares path modeling.""" ;
     sc:softwareHelp <http://msquant.sourceforge.net/> ;
     sc:url "http://msquant.sourceforge.net" .
 
+<https://bio.tools/msrcall> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0108,
+        edam:topic_0196,
+        edam:topic_3168,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC435>,
+        "pubmed:35766808" ;
+    sc:description "A Multi-scale Deep Neural Network to Basecall Oxford Nanopore Sequences." ;
+    sc:featureList edam:operation_0525,
+        edam:operation_3185 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "MSRCall" ;
+    sc:operatingSystem "Linux",
+        "Mac" ;
+    sc:url "https://github.com/d05943006/MSRCall" .
+
 <https://bio.tools/msrdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0140,
@@ -318320,8 +331288,32 @@ Simulation studies for sparse partial least squares path modeling.""" ;
         <https://orcid.org/0000-0003-3404-8312>,
         "Todd A. Gray" .
 
+<https://bio.tools/msrepdb> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0196,
+        edam:topic_0637,
+        edam:topic_0780,
+        edam:topic_3175,
+        edam:topic_3500 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAB1089>,
+        "pmcid:PMC8728181",
+        "pubmed:34850956" ;
+    sc:description "A comprehensive repetitive sequence database of over 80 000 species." ;
+    sc:featureList edam:operation_0368,
+        edam:operation_0379,
+        edam:operation_2421,
+        edam:operation_2422 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Other" ;
+    sc:name "msRepDB" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://msrepdb.cbrc.kaust.edu.sa/pages/msRepDB/index.html" .
+
 <https://bio.tools/mss> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3053,
@@ -318335,36 +331327,58 @@ Simulation studies for sparse partial least squares path modeling.""" ;
     sc:url "http://www.csjfann.ibms.sinica.edu.tw/eag/programlist/MSS/MSS.html" ;
     biotools:primaryContact "Cathy S. J. Fann" .
 
+<https://bio.tools/mssort-dia-xmbd> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0080,
+        edam:topic_0121,
+        edam:topic_0154,
+        edam:topic_3474,
+        edam:topic_3520 ;
+    sc:citation <https://doi.org/10.1016/J.JPROT.2022.104542>,
+        "pubmed:35231660" ;
+    sc:description "A deep learning classification tool of the peptide precursors quantified by OpenSWATH." ;
+    sc:featureList edam:operation_3767,
+        edam:operation_3799,
+        edam:operation_3802 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "MSSort-DIA-XMBD" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/jianweishuai/MSSort-DIA-XMBD" .
+
 <https://bio.tools/msstats> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ],
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_3714" ;
+            sc:name "Expression data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ],
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Expression data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ] ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Expression data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1636" ;
-            sc:name "Heat map" ;
-            sc:sameAs "http://edamontology.org/data_1636" ],
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Expression data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ],
+            sc:additionalType "http://edamontology.org/data_0951" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Statistical estimate score" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0951" ;
-            sc:name "Statistical estimate score" ;
-            sc:sameAs "http://edamontology.org/data_0951" ],
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3508" ;
+            sc:name "Plot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1636" ;
+            sc:encodingFormat "http://edamontology.org/format_3508" ;
+            sc:name "Heat map" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0769,
@@ -318388,7 +331402,7 @@ Simulation studies for sparse partial least squares path modeling.""" ;
     sc:url "http://www.msstats.org/" .
 
 <https://bio.tools/msstatsqc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0121 ;
     sc:citation <https://doi.org/10.1074/mcp.M116.064774> ;
@@ -318406,7 +331420,7 @@ Simulation studies for sparse partial least squares path modeling.""" ;
     biotools:primaryContact "Eralp Dogu" .
 
 <https://bio.tools/msstatsqcgui> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -318423,7 +331437,7 @@ Simulation studies for sparse partial least squares path modeling.""" ;
     biotools:primaryContact "Eralp Dogu" .
 
 <https://bio.tools/mst-backbone-gm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_2269,
@@ -318440,7 +331454,7 @@ Phylogeny inference via maximum likelihood is NP-hard. Current methods make simp
     sc:url "https://github.com/prabhavk/mst-backbone-sem-gm" .
 
 <https://bio.tools/mstmap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3053,
@@ -318454,8 +331468,33 @@ Phylogeny inference via maximum likelihood is NP-hard. Current methods make simp
     sc:softwareHelp <http://alumni.cs.ucr.edu/~yonghui/mstmap.html> ;
     sc:url "http://alumni.cs.ucr.edu/~yonghui/mstmap.html" .
 
+<https://bio.tools/mstopdiff> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Database portal" ;
+    sc:applicationSubCategory edam:topic_0080,
+        edam:topic_0121,
+        edam:topic_0601,
+        edam:topic_3320,
+        edam:topic_3520 ;
+    sc:citation <https://doi.org/10.1021/ACS.JPROTEOME.1C00766>,
+        "pubmed:34818005" ;
+    sc:description "A Tool for the Visualization of Mass Shifts in Deconvoluted Top-Down Proteomics Data for the Database-Independent Detection of Protein Modifications." ;
+    sc:featureList edam:operation_0417,
+        edam:operation_3215,
+        edam:operation_3629,
+        edam:operation_3633,
+        edam:operation_3755 ;
+    sc:isAccessibleForFree true ;
+    sc:license "BSD-3-Clause" ;
+    sc:name "MSTopDiff" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/PhilippKaulich/MSTopDiff" .
+
 <https://bio.tools/mstractor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0621,
@@ -318479,7 +331518,7 @@ Phylogeny inference via maximum likelihood is NP-hard. Current methods make simp
     sc:url "https://github.com/MetabolomicsSA/MStractor" .
 
 <https://bio.tools/mstree> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3053,
         edam:topic_3315,
@@ -318498,7 +331537,7 @@ MStree is an open-source software for estimating ancestral population sizes and
     sc:url "https://github.com/liujunfengtop/MStree/" .
 
 <https://bio.tools/mstruct> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3056 ;
@@ -318511,7 +331550,7 @@ MStree is an open-source software for estimating ancestral population sizes and
     sc:url "http://www.sailing.cs.cmu.edu/main/?page_id=399" .
 
 <https://bio.tools/msu-net> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0611,
         edam:topic_3384,
@@ -318527,7 +331566,7 @@ MStree is an open-source software for estimating ancestral population sizes and
     biotools:primaryContact "Jinhuai Liu" .
 
 <https://bio.tools/msuite> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Suite" ;
     sc:applicationSubCategory edam:topic_0654,
@@ -318551,8 +331590,30 @@ Msuite is written in Perl and R for Linux/Unix platform. To run Msuite you need
     sc:name "Msuite" ;
     sc:url "https://github.com/hellosunking/Msuite/" .
 
+<https://bio.tools/msup6_supa> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Nucleic acid sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_2885,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1016/J.YMETH.2021.11.010>,
+        "pubmed:34843978" ;
+    sc:description "A centralized online platform for predicting the m6A methylation degree of mRNA and the SNP-related traits in Maize." ;
+    sc:featureList edam:operation_0417 ;
+    sc:isAccessibleForFree true ;
+    sc:name "msup6 supA" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://www.xjtlu.edu.cn/biologicalsciences/maize" .
+
 <https://bio.tools/msv3d> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_2814 ;
@@ -318569,7 +331630,7 @@ Msuite is written in Perl and R for Linux/Unix platform. To run Msuite you need
     sc:url "http://decrypthon.igbmc.fr/msv3d/cgi-bin/home" .
 
 <https://bio.tools/msviz> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0121 ;
@@ -318594,7 +331655,7 @@ Msuite is written in Perl and R for Linux/Unix platform. To run Msuite you need
     biotools:primaryContact "Roman Mylonas" .
 
 <https://bio.tools/mt-hess> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3053,
@@ -318611,7 +331672,7 @@ Msuite is written in Perl and R for Linux/Unix platform. To run Msuite you need
         "Sylvia Richardson" .
 
 <https://bio.tools/mt-sccalr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library",
         "Script" ;
@@ -318635,7 +331696,7 @@ Identifying diagnosis-specific genotype-phenotype associations via joint multi-t
     sc:url "https://github.com/dulei323/MTSCCALR" .
 
 <https://bio.tools/mtProtEvol> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0128,
@@ -318656,7 +331717,7 @@ Identifying diagnosis-specific genotype-phenotype associations via joint multi-t
     biotools:primaryContact "Konstantin Gunbin" .
 
 <https://bio.tools/mta> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0637,
@@ -318679,8 +331740,30 @@ Identifying diagnosis-specific genotype-phenotype associations via joint multi-t
         "Windows" ;
     sc:url "https://github.com/chanw0/MTA" .
 
+<https://bio.tools/mtagcn> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0659,
+        edam:topic_0780,
+        edam:topic_3474,
+        edam:topic_3512,
+        edam:topic_3810 ;
+    sc:citation <https://doi.org/10.1186/S12859-022-04819-3>,
+        "pmcid:PMC9275082",
+        "pubmed:35820798" ;
+    sc:description "Predicting miRNA-target associations in Camellia sinensis var. assamica through graph convolution neural network." ;
+    sc:featureList edam:operation_0463,
+        edam:operation_3927 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "MTAGCN" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/haisonF/MTAGCN" .
+
 <https://bio.tools/mtbtndb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0621,
@@ -318697,8 +331780,43 @@ Identifying diagnosis-specific genotype-phenotype associations via joint multi-t
     sc:name "MtbTnDB" ;
     sc:url "http://www.mtbtndb.app" .
 
+<https://bio.tools/mtbveb> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:citation <https://doi.org/10.1371/journal.pone.0153771> ;
+    sc:description "MtbVeb is a web-based platform developed for designing vaccines against existing and emerging strains of mycobacterium tuberculosis. This includes drug resistant and extreme drug resistant M.Tb strains. It also allow users to design vaccines against M.tb using all three appraches (strain, antigen and epitope based vaccines)." ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "mtbveb" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/mtbveb/index.php> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/mtbveb/index.php" .
+
+<https://bio.tools/mtcards> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0622,
+        edam:topic_0634,
+        edam:topic_2229,
+        edam:topic_3053,
+        edam:topic_3673 ;
+    sc:citation <https://doi.org/10.1093/HMG/DDAB358>,
+        "pubmed:34897451" ;
+    sc:description "A database of mitochondrial genome variants in chinese population" ;
+    sc:featureList edam:operation_3196,
+        edam:operation_3211,
+        edam:operation_3227 ;
+    sc:isAccessibleForFree true ;
+    sc:name "MTCards" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://genemed.tech/mtcards/" .
+
 <https://bio.tools/mtctscan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0208,
@@ -318714,8 +331832,30 @@ Identifying diagnosis-specific genotype-phenotype associations via joint multi-t
     sc:softwareHelp <https://mtctscanhelp.github.io/mTCTScanHelp/> ;
     sc:url "http://jjwanglab.org/mTCTScan" .
 
+<https://bio.tools/mtd> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0621,
+        edam:topic_0769,
+        edam:topic_3170,
+        edam:topic_3697,
+        edam:topic_3941 ;
+    sc:citation <https://doi.org/10.1101/2021.11.16.468881> ;
+    sc:description "A unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data." ;
+    sc:featureList edam:operation_3192,
+        edam:operation_3463,
+        edam:operation_3799,
+        edam:operation_3891 ;
+    sc:isAccessibleForFree true ;
+    sc:license "CC-BY-NC-4.0" ;
+    sc:name "MTD" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/FEI38750/MTD" .
+
 <https://bio.tools/mtdfreml> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2269 ;
     sc:citation <https://doi.org/10.2527/1996.74112586x> ;
@@ -318728,7 +331868,7 @@ Identifying diagnosis-specific genotype-phenotype associations via joint multi-t
     sc:url "http://aipl.arsusda.gov/software/mtdfreml/" .
 
 <https://bio.tools/mtdna-server> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654,
@@ -318747,7 +331887,7 @@ Identifying diagnosis-specific genotype-phenotype associations via joint multi-t
         "Sebastian Schoenherr" .
 
 <https://bio.tools/mtdnacombine> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0610,
@@ -318767,7 +331907,7 @@ This vignette describes the mtDNAcombine package, an R library designed to suppo
     sc:url "https://github.com/EvolEcolGroup/mtDNAcombine" .
 
 <https://bio.tools/mtdnaprofiler> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654,
@@ -318784,7 +331924,7 @@ This vignette describes the mtDNAcombine package, an R library designed to suppo
     sc:url "http://mtprofiler.yonsei.ac.kr/" .
 
 <https://bio.tools/mtexpress> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0203,
@@ -318802,7 +331942,7 @@ This vignette describes the mtDNAcombine package, an R library designed to suppo
     biotools:primaryContact <https://orcid.org/0000-0002-2348-0778> .
 
 <https://bio.tools/mtg2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0622,
@@ -318819,8 +331959,30 @@ This vignette describes the mtDNAcombine package, an R library designed to suppo
     sc:url "https://sites.google.com/site/honglee0707/mtg2" ;
     biotools:primaryContact "Lee SH" .
 
+<https://bio.tools/mtgcn> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0128,
+        edam:topic_2640,
+        edam:topic_3295,
+        edam:topic_3360,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1093/BIB/BBAB432>,
+        "pubmed:34643232" ;
+    sc:description "Improving cancer driver gene identification using multi-task learning on graph convolutional network." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_2454,
+        edam:operation_3436 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "MTGCN" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/weiba/MTGCN" .
+
 <https://bio.tools/mtide> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0659,
@@ -318836,7 +331998,7 @@ This vignette describes the mtDNAcombine package, an R library designed to suppo
         "Zhejiang University" .
 
 <https://bio.tools/mtl-bc-lbc-bioner> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0218,
         edam:topic_3303,
@@ -318852,7 +332014,7 @@ Named entity recognition is a critical and fundamental task for biomedical text
     sc:url "https://github.com/zmmzGitHub/MTL-BC-LBC-BioNER" .
 
 <https://bio.tools/mtm-align> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0736 ;
@@ -318866,7 +332028,7 @@ Named entity recognition is a critical and fundamental task for biomedical text
     sc:url "http://yanglab.nankai.edu.cn/mTM-align/" .
 
 <https://bio.tools/mtmdat-haddock> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_2275,
@@ -318882,8 +332044,21 @@ Named entity recognition is a critical and fundamental task for biomedical text
     sc:url "http://www.ifm.liu.se/chemistry/molbiotech/maria_sunnerhagens_group/mtmdat/" ;
     biotools:primaryContact "Janosch Hennig" .
 
+<https://bio.tools/mtnbcpred> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:description "A webserver for the prediction of metastatic triple negative breast cancer (TNBC) patients. MTNBCPred is a service for the prediction of lymph-node metastatic and non-metastatic TNBC patients." ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "mtnbcpred" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/mtnbcpred/> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/mtnbcpred/" .
+
 <https://bio.tools/mtoolbox> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btu483>,
@@ -318896,7 +332071,7 @@ Named entity recognition is a critical and fundamental task for biomedical text
     sc:url "https://github.com/mitoNGS/MToolBox" .
 
 <https://bio.tools/mtop> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2269,
@@ -318917,7 +332092,7 @@ The 'TOP' vignette will provide a good start point for using TOP package.""" ;
     sc:url "https://github.com/andrewhaoyu/TOP" .
 
 <https://bio.tools/mtpa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Script" ;
     sc:applicationSubCategory edam:topic_0593,
@@ -318937,7 +332112,7 @@ In the data analysis of functional near-infrared spectroscopy (fNIRS), linear mo
     sc:url "https://github.com/PsyChiLin/MTPAinR" .
 
 <https://bio.tools/mtr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_3174 ;
     sc:citation "pubmed:21127032" ;
@@ -318948,7 +332123,7 @@ In the data analysis of functional near-infrared spectroscopy (fNIRS), linear mo
     biotools:primaryContact "Fabio Gori" .
 
 <https://bio.tools/mtr3d> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -318966,7 +332141,7 @@ In the data analysis of functional near-infrared spectroscopy (fNIRS), linear mo
     biotools:primaryContact <https://orcid.org/0000-0003-2948-2413> .
 
 <https://bio.tools/mtsplice> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0199,
@@ -318984,8 +332159,30 @@ In the data analysis of functional near-infrared spectroscopy (fNIRS), linear mo
     sc:name "MTSplice" ;
     sc:url "https://gitlab.cmm.in.tum.de/gagneurlab/mtsplice" .
 
+<https://bio.tools/mttb> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0659,
+        edam:topic_3170,
+        edam:topic_3324,
+        edam:topic_3360,
+        edam:topic_3384 ;
+    sc:citation <https://doi.org/10.3389/FCIMB.2022.850279>,
+        "pmcid:PMC8982078",
+        "pubmed:35392603" ;
+    sc:description "A Web-Based R/Shiny App for Pulmonary Tuberculosis Screening." ;
+    sc:featureList edam:operation_2428,
+        edam:operation_3223,
+        edam:operation_3435 ;
+    sc:isAccessibleForFree true ;
+    sc:name "mtTB" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://tuberculosis.shinyapps.io/mtTB/" .
+
 <https://bio.tools/mu-net> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3304,
         edam:topic_3444,
@@ -319000,7 +332197,7 @@ Multi-task U-Net for the simultaneous segmentation and skull-stripping of mouse
     sc:url "https://github.com/Hierakonpolis/MU-Net" .
 
 <https://bio.tools/mu-pseudeep> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0602,
@@ -319026,7 +332223,7 @@ Deep learning method for Pseudouridine site prediction.""" ;
     sc:url "https://github.com/smk5g5/MU-PseUDeep" .
 
 <https://bio.tools/mu2a> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2885 ;
     sc:citation "pubmed:21149339" ;
@@ -319041,7 +332238,7 @@ Deep learning method for Pseudouridine site prediction.""" ;
     biotools:primaryContact "Michael Krauthammer" .
 
 <https://bio.tools/mucnv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3673,
@@ -319058,7 +332255,7 @@ Deep learning method for Pseudouridine site prediction.""" ;
     biotools:primaryContact <https://orcid.org/0000-0003-0891-0204> .
 
 <https://bio.tools/mucor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_2269,
@@ -319074,8 +332271,21 @@ Deep learning method for Pseudouridine site prediction.""" ;
     sc:url "https://github.com/blachlylab/mucor" ;
     biotools:primaryContact "James S. Blachly" .
 
+<https://bio.tools/mucormydb> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:description "Mucormydb is a web server that enables the scientific community to fight opportunistic fungal infections caused by a group of molds" ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "mucormydb" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/mucormydb/index.html> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/mucormydb/index.html" .
+
 <https://bio.tools/mud> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0219,
         edam:topic_1317 ;
@@ -319092,8 +332302,31 @@ Deep learning method for Pseudouridine site prediction.""" ;
     sc:softwareVersion "1" ;
     sc:url "http://mud.tau.ac.il/" .
 
+<https://bio.tools/muddy_db> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Database portal" ;
+    sc:applicationSubCategory edam:topic_0089,
+        edam:topic_0218,
+        edam:topic_0637,
+        edam:topic_3301,
+        edam:topic_3473 ;
+    sc:citation <https://doi.org/10.7717/PEERJ.12463>,
+        "pmcid:PMC8588855",
+        "pubmed:34820191" ;
+    sc:description "Biologically-oriented mud volcano database." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3436 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "muddy_db" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://muddy-db.shinyapps.io/muddy_db/" .
+
 <https://bio.tools/mude> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0121 ;
@@ -319110,7 +332343,7 @@ Deep learning method for Pseudouridine site prediction.""" ;
         "Fabio R. Cerqueira" .
 
 <https://bio.tools/muffin> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0769,
@@ -319131,7 +332364,7 @@ MUFFIN is a hybrid assembly and differential binning workflow for metagenomics,
     sc:url "https://github.com/RVanDamme/MUFFIN" .
 
 <https://bio.tools/muffin-drug> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0602,
@@ -319147,7 +332380,7 @@ MUFFIN is a hybrid assembly and differential binning workflow for metagenomics,
         "Xiangxiang Zeng" .
 
 <https://bio.tools/mufold> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2275,
         edam:topic_2814 ;
@@ -319161,7 +332394,7 @@ MUFFIN is a hybrid assembly and differential binning workflow for metagenomics,
     biotools:primaryContact "Dong Xu" .
 
 <https://bio.tools/mufold_cl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_2275,
@@ -319176,7 +332409,7 @@ MUFFIN is a hybrid assembly and differential binning workflow for metagenomics,
     biotools:primaryContact "Dong Xu" .
 
 <https://bio.tools/mugbas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3053,
@@ -319193,102 +332426,94 @@ MUFFIN is a hybrid assembly and differential binning workflow for metagenomics,
 
 <https://bio.tools/mugvre> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0905" ;
-            sc:name "Protein interaction raw data" ;
-            sc:sameAs "http://edamontology.org/data_0905" ],
+            sc:additionalType "http://edamontology.org/data_0905" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Protein interaction raw data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ],
+            sc:additionalType "http://edamontology.org/data_1461" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein-ligand complex" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3210" ;
-            sc:name "Genome index" ;
-            sc:sameAs "http://edamontology.org/data_3210" ],
+            sc:additionalType "http://edamontology.org/data_0883" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Structure" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2012" ;
-            sc:name "Sequence coordinates" ;
-            sc:sameAs "http://edamontology.org/data_2012" ],
+            sc:additionalType "http://edamontology.org/data_2012" ;
+            sc:name "Sequence coordinates" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1461" ;
-            sc:name "Protein-ligand complex" ;
-            sc:sameAs "http://edamontology.org/data_1461" ],
+            sc:additionalType "http://edamontology.org/data_3869" ;
+            sc:name "Simulation" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ],
+            sc:additionalType "http://edamontology.org/data_3210" ;
+            sc:name "Genome index" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0905" ;
-            sc:name "Protein interaction raw data" ;
-            sc:sameAs "http://edamontology.org/data_0905" ],
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:encodingFormat "http://edamontology.org/format_2200" ;
+            sc:name "Nucleic acid sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ],
+            sc:additionalType "http://edamontology.org/data_0905" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Protein interaction raw data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3869" ;
-            sc:name "Simulation" ;
-            sc:sameAs "http://edamontology.org/data_3869" ],
+            sc:additionalType "http://edamontology.org/data_0905" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Protein interaction raw data" ],
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-            sc:identifier "http://edamontology.org/data_0883" ;
-            sc:name "Structure" ;
-            sc:sameAs "http://edamontology.org/data_0883" ],
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ],
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:encodingFormat "http://edamontology.org/format_2305" ;
+            sc:name "Sequence features" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ],
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:name "Annotation track" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0883" ;
-            sc:name "Structure" ;
-            sc:sameAs "http://edamontology.org/data_0883" ],
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein structure" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0905" ;
-            sc:name "Protein interaction raw data" ;
-            sc:sameAs "http://edamontology.org/data_0905" ] ;
+            sc:additionalType "http://edamontology.org/data_0883" ;
+            sc:name "Structure" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3870" ;
-            sc:name "Trajectory data" ;
-            sc:sameAs "http://edamontology.org/data_3870" ],
+            sc:additionalType "http://edamontology.org/data_3870" ;
+            sc:name "Trajectory data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ],
+            sc:additionalType "http://edamontology.org/data_1276" ;
+            sc:encodingFormat "http://edamontology.org/format_3003" ;
+            sc:name "Nucleic acid features" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1276" ;
-            sc:name "Nucleic acid features" ;
-            sc:sameAs "http://edamontology.org/data_1276" ],
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein structure" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3870" ;
-            sc:name "Trajectory data" ;
-            sc:sameAs "http://edamontology.org/data_3870" ],
+            sc:additionalType "http://edamontology.org/data_0906" ;
+            sc:encodingFormat "http://edamontology.org/format_4002" ;
+            sc:name "Protein interaction data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3872" ;
-            sc:name "Topology data" ;
-            sc:sameAs "http://edamontology.org/data_3872" ],
+            sc:additionalType "http://edamontology.org/data_3872" ;
+            sc:encodingFormat "http://edamontology.org/format_4002" ;
+            sc:name "Topology data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2877" ;
-            sc:name "Protein complex" ;
-            sc:sameAs "http://edamontology.org/data_2877" ],
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_2305" ;
+            sc:name "Annotation track" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2084" ;
-            sc:name "Nucleic acid report" ;
-            sc:sameAs "http://edamontology.org/data_2084" ],
+            sc:additionalType "http://edamontology.org/data_2877" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein complex" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ],
+            sc:additionalType "http://edamontology.org/data_3870" ;
+            sc:name "Trajectory data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0906" ;
-            sc:name "Protein interaction data" ;
-            sc:sameAs "http://edamontology.org/data_0906" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2084" ;
+            sc:name "Nucleic acid report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Workbench" ;
     sc:applicationSubCategory edam:topic_0097,
@@ -319329,7 +332554,7 @@ MUFFIN is a hybrid assembly and differential binning workflow for metagenomics,
     biotools:primaryContact <https://orcid.org/0000-0002-6797-8746> .
 
 <https://bio.tools/mulan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654,
@@ -319348,7 +332573,7 @@ MUFFIN is a hybrid assembly and differential binning workflow for metagenomics,
     biotools:primaryContact "Ovcharenko I." .
 
 <https://bio.tools/mulcch> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0804,
         edam:topic_3308,
@@ -319363,7 +332588,7 @@ MUFFIN is a hybrid assembly and differential binning workflow for metagenomics,
     biotools:primaryContact "Roy S" .
 
 <https://bio.tools/mulcom> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -319382,7 +332607,7 @@ MUFFIN is a hybrid assembly and differential binning workflow for metagenomics,
     biotools:primaryContact "Claudio Isella" .
 
 <https://bio.tools/mulocdeep> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0140,
@@ -319406,7 +332631,7 @@ MULocDeep: An Interpretable Deep Learning Model for Protein Localization Predict
     sc:url "http://www.mu-loc.org/" .
 
 <https://bio.tools/mulpba> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_2814 ;
@@ -319423,7 +332648,7 @@ MULocDeep: An Interpretable Deep Learning Model for Protein Localization Predict
         "Sylvain Léonard" .
 
 <https://bio.tools/mulrf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3053,
         edam:topic_3293,
@@ -319440,7 +332665,7 @@ MULocDeep: An Interpretable Deep Learning Model for Protein Localization Predict
     biotools:primaryContact "Chaudhary R" .
 
 <https://bio.tools/multassoc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3053 ;
@@ -319455,7 +332680,7 @@ MULocDeep: An Interpretable Deep Learning Model for Protein Localization Predict
     sc:url "http://dceg.cancer.gov/tools/analysis/multassoc" .
 
 <https://bio.tools/multeesum> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0203,
@@ -319472,8 +332697,28 @@ MULocDeep: An Interpretable Deep Learning Model for Protein Localization Predict
     sc:url "http://www.cs.utah.edu/~miriah/multeesum/" ;
     biotools:primaryContact "Tamara Munzner" .
 
+<https://bio.tools/multi-branch-cnn> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0202,
+        edam:topic_3335,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1101/2021.11.13.468342> ;
+    sc:description "Classification of ion channel interacting peptides using parallel convolutional neural networks." ;
+    sc:featureList edam:operation_3359,
+        edam:operation_3435,
+        edam:operation_3695 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "Multi-Branch-CNN" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/jieluyan/Multi-Branch-CNN" .
+
 <https://bio.tools/multi-car> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3125,
@@ -319491,8 +332736,33 @@ MULocDeep: An Interpretable Deep Learning Model for Protein Localization Predict
     sc:url "http://140.114.85.168/Multi-CAR/index.php" ;
     biotools:primaryContact "Chin Lung Lu" .
 
+<https://bio.tools/multi-csar> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Nucleic acid sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_0196,
+        edam:topic_3168 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAC301>,
+        "pmcid:PMC9252826",
+        "pubmed:35524553" ;
+    sc:description "A web server for scaffolding contigs using multiple reference genomes." ;
+    sc:featureList edam:operation_0479,
+        edam:operation_0490,
+        edam:operation_0525,
+        edam:operation_3216 ;
+    sc:isAccessibleForFree true ;
+    sc:name "Multi-CSAR" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://genome.cs.nthu.edu.tw/Multi-CSAR/" .
+
 <https://bio.tools/multi-dice> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0797,
         edam:topic_3056,
@@ -319513,7 +332783,7 @@ MULocDeep: An Interpretable Deep Learning Model for Protein Localization Predict
     biotools:primaryContact "Alexander Xue" .
 
 <https://bio.tools/multi-findcore-toolbox> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0593,
         edam:topic_2269,
@@ -319532,7 +332802,7 @@ MULocDeep: An Interpretable Deep Learning Model for Protein Localization Predict
     biotools:primaryContact "David Snyder" .
 
 <https://bio.tools/multi-fingerprint_browser> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0632,
@@ -319555,7 +332825,7 @@ MULocDeep: An Interpretable Deep Learning Model for Protein Localization Predict
     biotools:primaryContact "Jean-Louis Reymond" .
 
 <https://bio.tools/multi-harmony> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -319576,7 +332846,7 @@ MULocDeep: An Interpretable Deep Learning Model for Protein Localization Predict
     biotools:primaryContact "Bernd Brandt" .
 
 <https://bio.tools/multi-parametric-response-map> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3304,
@@ -319596,26 +332866,26 @@ MULocDeep: An Interpretable Deep Learning Model for Protein Localization Predict
 
 <https://bio.tools/multi-q> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ],
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_3747" ;
+            sc:name "Peptide identification" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ],
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3710" ;
+            sc:name "Mass spectrometry spectra" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3654" ;
+            sc:name "Mass spectrometry spectra" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ],
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3654" ;
+            sc:name "Mass spectrometry spectra" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Expression data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -319632,8 +332902,31 @@ MULocDeep: An Interpretable Deep Learning Model for Protein Localization Predict
     sc:softwareHelp <http://ms.iis.sinica.edu.tw/COmics/Software_Multi-Q.html> ;
     sc:url "http://ms.iis.sinica.edu.tw/Multi-Q/" .
 
+<https://bio.tools/multi-resbind> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0128,
+        edam:topic_3474,
+        edam:topic_3512,
+        edam:topic_3518,
+        edam:topic_3794 ;
+    sc:citation <https://doi.org/10.1186/S12859-021-04430-Y>,
+        "pmcid:PMC8594109",
+        "pubmed:34781902" ;
+    sc:description "A residual network-based multi-label classifier for in vivo RNA binding prediction and preference visualization." ;
+    sc:featureList edam:operation_0278,
+        edam:operation_3901,
+        edam:operation_3902 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "Multi-resBind" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/tjustorm/Multi-resBind" .
+
 <https://bio.tools/multi-scattering> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3315,
         edam:topic_3318,
@@ -319651,7 +332944,7 @@ Welcome to "Multi-Scattering" a freely accessible online software for the modeli
     sc:url "https://multi-scattering.com/" .
 
 <https://bio.tools/multi-template_matching> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3382,
@@ -319672,7 +332965,7 @@ Multi-Template Matching for object-detection.""" ;
     sc:url "https://github.com/multi-template-matching" .
 
 <https://bio.tools/multiPhATE> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Script" ;
     sc:applicationSubCategory edam:topic_0160,
@@ -319692,7 +332985,7 @@ Multi-Template Matching for object-detection.""" ;
     biotools:primaryContact "Carol L. Ecale Zhou" .
 
 <https://bio.tools/multiSLIDE> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0121,
@@ -319714,18 +333007,15 @@ multiSLIDE is an open-source tool for query-driven visualization of quantitative
 
 <https://bio.tools/multi_experiment_matrix> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2109" ;
-            sc:name "Identifier (hybrid)" ;
-            sc:sameAs "http://edamontology.org/data_2109" ] ;
+            sc:additionalType "http://edamontology.org/data_2109" ;
+            sc:name "Identifier (hybrid)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1636" ;
-            sc:name "Heat map" ;
-            sc:sameAs "http://edamontology.org/data_1636" ],
+            sc:additionalType "http://edamontology.org/data_3111" ;
+            sc:name "Processed microarray data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3111" ;
-            sc:name "Processed microarray data" ;
-            sc:sameAs "http://edamontology.org/data_3111" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1636" ;
+            sc:name "Heat map" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0085,
         edam:topic_0092,
@@ -319746,7 +333036,7 @@ multiSLIDE is an open-source tool for query-driven visualization of quantitative
     biotools:primaryContact "Priit Adler" .
 
 <https://bio.tools/multi_locus_view> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3169,
         edam:topic_3170,
@@ -319765,7 +333055,7 @@ Multi Locus View (MLV) is a web based tool for analysing and visualising Next Ge
     sc:url "https://github.com/Hughes-Genome-Group/mlv" .
 
 <https://bio.tools/multiassayexperiment> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -319783,8 +333073,30 @@ Multi Locus View (MLV) is a web based tool for analysing and visualising Next Ge
     sc:url "http://bioconductor.org/packages/release/bioc/html/MultiAssayExperiment.html" ;
     biotools:primaryContact "Marcel Ramos" .
 
+<https://bio.tools/multibac> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_2269,
+        edam:topic_3077,
+        edam:topic_3361 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC132>,
+        "pmcid:PMC9048667",
+        "pubmed:35238331" ;
+    sc:description "An R package to remove batch effects in multi-omic experiments." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3891 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "MultiBaC" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://www.bioconductor.org/packages/release/bioc/manuals/MultiBaC/man/MultiBaC.pdf> ;
+    sc:url "https://www.bioconductor.org/packages/release/bioc/html/MultiBaC.html" .
+
 <https://bio.tools/multiband-fmri-volume-censoring> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3304,
@@ -319801,7 +333113,7 @@ Multi Locus View (MLV) is a web based tool for analysing and visualising Next Ge
     biotools:primaryContact "John Williams" .
 
 <https://bio.tools/multibind> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0128,
@@ -319823,7 +333135,7 @@ Multi Locus View (MLV) is a web based tool for analysing and visualising Next Ge
     biotools:primaryContact "MultiBind administrator" .
 
 <https://bio.tools/multibreak-sv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_3168,
@@ -319839,24 +333151,58 @@ Multi Locus View (MLV) is a web based tool for analysing and visualising Next Ge
     biotools:primaryContact "Anna Ritz",
         "Benjamin J. Raphael" .
 
+<https://bio.tools/multicapsnet> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0128,
+        edam:topic_0203,
+        edam:topic_3170,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.3389/FGENE.2021.767602>,
+        "pmcid:PMC8652257",
+        "pubmed:34899854" ;
+    sc:description "A General Framework for Data Integration and Interpretable Classification." ;
+    sc:featureList edam:operation_3225,
+        edam:operation_3227,
+        edam:operation_3927 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "MultiCapsNet" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/wanglf19/MultiCapsNet" .
+
 <https://bio.tools/multiclasspairs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0769,
-        edam:topic_2640 ;
+        edam:topic_3170,
+        edam:topic_3277,
+        edam:topic_3308,
+        edam:topic_3518 ;
     sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAB088>,
         "pubmed:33543757" ;
-    sc:description "An R package to train multiclass pairbased classifier." ;
-    sc:featureList edam:operation_0337,
+    sc:description "A comparison of rule-based and centroid single-sample multiclass predictors for transcriptomic classification." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_0337,
         edam:operation_2454,
+        edam:operation_3435,
+        edam:operation_3800,
         edam:operation_3907 ;
+    sc:isAccessibleForFree true ;
     sc:license "GPL-2.0" ;
     sc:name "multiclassPairs" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://cran.r-project.org/web/packages/multiclassPairs/multiclassPairs.pdf>,
+        <https://cran.r-project.org/web/packages/multiclassPairs/vignettes/Tutorial.html> ;
     sc:url "https://github.com/NourMarzouka/multiclassPairs" .
 
 <https://bio.tools/multiclust> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3053,
@@ -319875,7 +333221,7 @@ Multi Locus View (MLV) is a web based tool for analysing and visualising Next Ge
     biotools:primaryContact "Nathan Lawlor" .
 
 <https://bio.tools/multicoil> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1371/journal.pone.0023519> ;
@@ -319889,7 +333235,7 @@ Multi Locus View (MLV) is a web based tool for analysing and visualising Next Ge
     sc:url "http://groups.csail.mit.edu/cb/multicoil" .
 
 <https://bio.tools/multicom> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0082 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btq058>,
@@ -319903,7 +333249,7 @@ Multi Locus View (MLV) is a web based tool for analysing and visualising Next Ge
     sc:url "http://sysbio.rnet.missouri.edu/multicom_cluster/human/" .
 
 <https://bio.tools/multicom2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0154,
@@ -319919,7 +333265,7 @@ Multi Locus View (MLV) is a web based tool for analysing and visualising Next Ge
     biotools:primaryContact "Jianlin Cheng" .
 
 <https://bio.tools/multicrispr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0632,
         edam:topic_3168,
@@ -319935,7 +333281,7 @@ Multi-locus multi-purpose Crispr/Cas design.""" ;
     sc:url "https://gitlab.gwdg.de/loosolab/software/multicrispr" .
 
 <https://bio.tools/multidataset> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0654,
@@ -319956,7 +333302,7 @@ Multi-locus multi-purpose Crispr/Cas design.""" ;
     biotools:primaryContact <http://orcid.org/0000-0002-6014-3498> .
 
 <https://bio.tools/multidcox> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203 ;
     sc:citation <https://doi.org/10.1186/s12859-017-1963-7> ;
@@ -319971,7 +333317,7 @@ Multi-locus multi-purpose Crispr/Cas design.""" ;
     biotools:primaryContact "Herty Liany" .
 
 <https://bio.tools/multidiseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3053 ;
@@ -319983,14 +333329,12 @@ Multi-locus multi-purpose Crispr/Cas design.""" ;
 
 <https://bio.tools/multidisp> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:name "Sequence alignment" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1354" ;
-            sc:name "Sequence profile" ;
-            sc:sameAs "http://edamontology.org/data_1354" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1354" ;
+            sc:name "Sequence profile" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0092 ;
     sc:citation <https://doi.org/10.1002/humu.20166> ;
@@ -320006,7 +333350,7 @@ Multi-locus multi-purpose Crispr/Cas design.""" ;
     sc:url "http://structure.bmc.lu.se/MultiDisp/index.html" .
 
 <https://bio.tools/multidti> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3336,
@@ -320029,14 +333373,14 @@ Multi-locus multi-purpose Crispr/Cas design.""" ;
 
 <https://bio.tools/multifastamix> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:citation <https://doi.org/10.1093/nar/gkw343>,
@@ -320052,7 +333396,7 @@ Multi-locus multi-purpose Crispr/Cas design.""" ;
     biotools:primaryContact "Galaxy Support Team" .
 
 <https://bio.tools/multifit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0611,
@@ -320074,8 +333418,28 @@ Multi-locus multi-purpose Crispr/Cas design.""" ;
     sc:url "http://modbase.compbio.ucsf.edu/multifit/" ;
     biotools:primaryContact "MultiFit Support" .
 
+<https://bio.tools/multiflex-lf> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Desktop application" ;
+    sc:applicationSubCategory edam:topic_0080,
+        edam:topic_0121,
+        edam:topic_0154,
+        edam:topic_0601,
+        edam:topic_3520 ;
+    sc:citation <https://doi.org/10.1021/ACS.JPROTEOME.1C00669>,
+        "pubmed:35086334" ;
+    sc:description "A Computational Approach to Quantify the Modification Stoichiometries in Label-Free Proteomics Data Sets." ;
+    sc:featureList edam:operation_0417,
+        edam:operation_3634,
+        edam:operation_3755 ;
+    sc:isAccessibleForFree true ;
+    sc:license "AGPL-3.0" ;
+    sc:name "multiFLEX-LF" ;
+    sc:operatingSystem "Windows" ;
+    sc:url "https://gitlab.com/SteenOmicsLab/multiflex-lf" .
+
 <https://bio.tools/multifocus-image-fusion> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -320094,7 +333458,7 @@ Multi-locus multi-purpose Crispr/Cas design.""" ;
     biotools:primaryContact "Kun Zhan" .
 
 <https://bio.tools/multigems> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2885,
         edam:topic_3053,
@@ -320109,7 +333473,7 @@ Multi-locus multi-purpose Crispr/Cas design.""" ;
     biotools:primaryContact "Xinping Cui" .
 
 <https://bio.tools/multiglycan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0219,
         edam:topic_0601,
@@ -320125,7 +333489,7 @@ Multi-locus multi-purpose Crispr/Cas design.""" ;
         "Haixu Tang" .
 
 <https://bio.tools/multigsea> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -320146,7 +333510,7 @@ Combining GSEA-based pathway enrichment with multi omics data integration.""" ;
     sc:url "https://github.com/yigbt/multiGSEA" .
 
 <https://bio.tools/multigwas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2885,
@@ -320167,7 +333531,7 @@ Combining GSEA-based pathway enrichment with multi omics data integration.""" ;
     sc:url "https://github.com/agrosavia-bioinformatics/multiGWAS" .
 
 <https://bio.tools/multik> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0102,
@@ -320190,7 +333554,7 @@ Combining GSEA-based pathway enrichment with multi omics data integration.""" ;
     sc:url "https://github.com/siyao-liu/MultiK" .
 
 <https://bio.tools/multilcs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344 ;
@@ -320206,7 +333570,7 @@ Combining GSEA-based pathway enrichment with multi omics data integration.""" ;
     biotools:primaryContact "milchsage" .
 
 <https://bio.tools/multiloc2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0089,
@@ -320223,7 +333587,7 @@ Combining GSEA-based pathway enrichment with multi omics data integration.""" ;
     sc:url "http://abi.inf.uni-tuebingen.de/Services/MultiLoc2" .
 
 <https://bio.tools/multimap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0102,
@@ -320240,8 +333604,31 @@ Combining GSEA-based pathway enrichment with multi omics data integration.""" ;
     biotools:primaryContact "Rasheeda Williams",
         "Tara C. Matise" .
 
+<https://bio.tools/multimap_multi-omics> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0749,
+        edam:topic_2229,
+        edam:topic_3170,
+        edam:topic_3308,
+        edam:topic_3940 ;
+    sc:citation <https://doi.org/10.1186/S13059-021-02565-Y>,
+        "pmcid:PMC8686224",
+        "pubmed:34930412" ;
+    sc:description "Dimensionality reduction and integration of multimodal data." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_3891,
+        edam:operation_3935 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "MultiMAP" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://github.com/Teichlab/MultiMAP" .
+
 <https://bio.tools/multimarker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3172,
         edam:topic_3360,
@@ -320261,18 +333648,18 @@ Combining GSEA-based pathway enrichment with multi omics data integration.""" ;
 
 <https://bio.tools/multimed> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2082" ;
-            sc:name "Matrix" ;
-            sc:sameAs "http://edamontology.org/data_2082" ] ;
+            sc:additionalType "http://edamontology.org/data_2082" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "Matrix" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0951" ;
-            sc:name "Statistical estimate score" ;
-            sc:sameAs "http://edamontology.org/data_0951" ],
+            sc:additionalType "http://edamontology.org/data_1669" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "P-value" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1669" ;
-            sc:name "P-value" ;
-            sc:sameAs "http://edamontology.org/data_1669" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0951" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "Statistical estimate score" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2269,
@@ -320291,7 +333678,7 @@ Combining GSEA-based pathway enrichment with multi omics data integration.""" ;
     biotools:primaryContact "Simina M. Boca" .
 
 <https://bio.tools/multimeta> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2885,
         edam:topic_3053,
@@ -320308,7 +333695,7 @@ Combining GSEA-based pathway enrichment with multi omics data integration.""" ;
     biotools:primaryContact "Dragana Vuckovic" .
 
 <https://bio.tools/multimir> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0634,
@@ -320325,7 +333712,7 @@ Combining GSEA-based pathway enrichment with multi omics data integration.""" ;
     biotools:primaryContact "Dan Theodorescu" .
 
 <https://bio.tools/multimorbidity> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0634,
@@ -320341,7 +333728,7 @@ Combining GSEA-based pathway enrichment with multi omics data integration.""" ;
     sc:url "https://comorbidity.comp-sysbio.org" .
 
 <https://bio.tools/multinanopolish> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0196,
@@ -320361,7 +333748,7 @@ We present an efficient implementation of Nanopolish, called MultiNanopolish. Mu
     sc:url "https://github.com/BioinformaticsCSU/MultiNanopolish" .
 
 <https://bio.tools/multiomicsviz> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2259,
         edam:topic_3391 ;
@@ -320380,7 +333767,7 @@ We present an efficient implementation of Nanopolish, called MultiNanopolish. Mu
     biotools:primaryContact "Jing Wang" .
 
 <https://bio.tools/multiomix> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0659,
@@ -320405,7 +333792,7 @@ We present an efficient implementation of Nanopolish, called MultiNanopolish. Mu
     sc:url "https://www.multiomix.org" .
 
 <https://bio.tools/multipaths> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0769,
@@ -320427,7 +333814,7 @@ A Python package for network analysis through diffusion label propagation algori
     sc:url "https://github.com/multipaths" .
 
 <https://bio.tools/multiphen> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2885,
@@ -320444,7 +333831,7 @@ A Python package for network analysis through diffusion label propagation algori
     biotools:primaryContact "Lachlan Coin" .
 
 <https://bio.tools/multiphyl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_3293 ;
@@ -320456,7 +333843,7 @@ A Python package for network analysis through diffusion label propagation algori
     sc:url "http://www.cs.nuim.ie/distributed/multiphyl.php" .
 
 <https://bio.tools/multiple_tdt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3053 ;
@@ -320470,7 +333857,7 @@ A Python package for network analysis through diffusion label propagation algori
     biotools:primaryContact "Hongyu Zhao" .
 
 <https://bio.tools/multiple_tools_explore> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0602,
@@ -320495,30 +333882,30 @@ MeTeOR mines the PubMed literature, revealing knowledge previously hidden in a s
 
 <https://bio.tools/multiplierz> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ],
+            sc:additionalType "http://edamontology.org/data_3786" ;
+            sc:encodingFormat "http://edamontology.org/format_3621" ;
+            sc:name "Query script" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3786" ;
-            sc:name "Query script" ;
-            sc:sameAs "http://edamontology.org/data_3786" ],
+            sc:additionalType "http://edamontology.org/data_3786" ;
+            sc:encodingFormat "http://edamontology.org/format_3621" ;
+            sc:name "Query script" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ],
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:encodingFormat "http://edamontology.org/format_3468" ;
+            sc:name "Mass spectrometry data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3786" ;
-            sc:name "Query script" ;
-            sc:sameAs "http://edamontology.org/data_3786" ] ;
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:encodingFormat "http://edamontology.org/format_3468" ;
+            sc:name "Mass spectrometry data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ],
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Image" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:encodingFormat "http://edamontology.org/format_3468" ;
+            sc:name "Mass spectrometry data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0121,
@@ -320559,14 +333946,12 @@ MeTeOR mines the PubMed literature, revealing knowledge previously hidden in a s
 
 <https://bio.tools/multiplx> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1240" ;
-            sc:name "PCR primers" ;
-            sc:sameAs "http://edamontology.org/data_1240" ] ;
+            sc:additionalType "http://edamontology.org/data_1240" ;
+            sc:name "PCR primers" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1234" ;
-            sc:name "Sequence set (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1234" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1234" ;
+            sc:name "Sequence set (nucleic acid)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3519 ;
@@ -320584,7 +333969,7 @@ MeTeOR mines the PubMed literature, revealing knowledge previously hidden in a s
     biotools:primaryContact "Lauris Kaplinski" .
 
 <https://bio.tools/multipow> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3053,
         edam:topic_3517 ;
@@ -320600,7 +333985,7 @@ MeTeOR mines the PubMed literature, revealing knowledge previously hidden in a s
     biotools:primaryContact "Peter Kraft" .
 
 <https://bio.tools/multipred2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0625,
@@ -320618,7 +334003,7 @@ MeTeOR mines the PubMed literature, revealing knowledge previously hidden in a s
     biotools:primaryContact "Guang LanZhang" .
 
 <https://bio.tools/multiprot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
@@ -320634,7 +334019,7 @@ MeTeOR mines the PubMed literature, revealing knowledge previously hidden in a s
     sc:url "http://bioinfo3d.cs.tau.ac.il/MultiProt/" .
 
 <https://bio.tools/multipsq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3293,
         edam:topic_3301,
@@ -320653,10 +334038,10 @@ MeTeOR mines the PubMed literature, revealing knowledge previously hidden in a s
 
 <https://bio.tools/multiqc> a sc:SoftwareApplication ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_3750" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_3168 ;
@@ -320677,7 +334062,7 @@ MeTeOR mines the PubMed literature, revealing knowledge previously hidden in a s
     biotools:primaryContact <http://orcid.org/0000-0003-4101-2502> .
 
 <https://bio.tools/multirnafold> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0099,
@@ -320693,7 +334078,7 @@ MeTeOR mines the PubMed literature, revealing knowledge previously hidden in a s
     biotools:primaryContact "Mirela Andronescu" .
 
 <https://bio.tools/multiscan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -320712,7 +334097,7 @@ MeTeOR mines the PubMed literature, revealing knowledge previously hidden in a s
     biotools:primaryContact "Mizanur Khondoker" .
 
 <https://bio.tools/multisnv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_2640,
@@ -320729,7 +334114,7 @@ MeTeOR mines the PubMed literature, revealing knowledge previously hidden in a s
     biotools:primaryContact "Malvina Josephidou" .
 
 <https://bio.tools/multisyncpy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_2269,
@@ -320741,22 +334126,8 @@ MeTeOR mines the PubMed literature, revealing knowledge previously hidden in a s
     sc:name "multiSyncPy" ;
     sc:url "https://github.com/cslab-hub/multiSyncPy" .
 
-<https://bio.tools/multitable_review> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3174,
-        edam:topic_3304,
-        edam:topic_3697 ;
-    sc:citation <https://doi.org/10.3389/FGENE.2019.00627>,
-        "pmcid:PMC6724662",
-        "pubmed:31555316" ;
-    sc:description "> VERY_LOW CONFIDENCE! | > CORRECT NAME OF TOOL COULD ALSO BE 'multitable', 'domains-different' | Multitable Methods for Microbiome Data Integration | Code to accompany \"Multitable Methods for Microbiome Data Integration\" | This is code to accompany Multitable Methods for Microbiome Data Integration by Sankaran and Holmes | To rerun any particular method, edit the associated read_data() command into read_data(simulate=TRUE), and put simulated data sim.rda in a data/ subdirectory of the main repo. To run all methods, just use bash run_all.sh in the main repository" ;
-    sc:featureList edam:operation_2939,
-        edam:operation_3096,
-        edam:operation_3891 ;
-    sc:name "multitable_review" ;
-    sc:url "https://github.com/krisrs1128/multitable_review" .
-
 <https://bio.tools/multitfa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3172,
@@ -320772,7 +334143,7 @@ We present multiTFA, a multivariate thermodynamics-based metabolic flux analysis
     sc:url "https://github.com/biosustain/multitfa" .
 
 <https://bio.tools/multitrans> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3170,
         edam:topic_3308 ;
@@ -320786,7 +334157,7 @@ We present multiTFA, a multivariate thermodynamics-based metabolic flux analysis
     sc:url "https://github.com/jzbio/MultiTrans" .
 
 <https://bio.tools/multivarNetwork> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0602,
@@ -320804,7 +334175,7 @@ We present multiTFA, a multivariate thermodynamics-based metabolic flux analysis
     biotools:primaryContact "Julien Chiquet" .
 
 <https://bio.tools/multiverse> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3473,
@@ -320822,7 +334193,7 @@ We present multiTFA, a multivariate thermodynamics-based metabolic flux analysis
     biotools:primaryContact "Léo Pio-Lopez" .
 
 <https://bio.tools/multivi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2229,
@@ -320843,7 +334214,7 @@ We present multiTFA, a multivariate thermodynamics-based metabolic flux analysis
     sc:url "https://docs.scvi-tools.org/en/stable/user_guide/models/multivi.html" .
 
 <https://bio.tools/multiview> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3172,
         edam:topic_3473 ;
@@ -320861,7 +334232,7 @@ We present multiTFA, a multivariate thermodynamics-based metabolic flux analysis
     biotools:primaryContact "Samir Kanaan-Izquierdo" .
 
 <https://bio.tools/multiz> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0160 ;
@@ -320876,14 +334247,14 @@ We present multiTFA, a multivariate thermodynamics-based metabolic flux analysis
 
 <https://bio.tools/multovl> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2012" ;
-            sc:name "Sequence coordinates" ;
-            sc:sameAs "http://edamontology.org/data_2012" ] ;
+            sc:additionalType "http://edamontology.org/data_2012" ;
+            sc:encodingFormat "http://edamontology.org/format_2305" ;
+            sc:name "Sequence coordinates" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2012" ;
-            sc:name "Sequence coordinates" ;
-            sc:sameAs "http://edamontology.org/data_2012" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2012" ;
+            sc:encodingFormat "http://edamontology.org/format_1975" ;
+            sc:name "Sequence coordinates" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/bts607> ;
@@ -320901,7 +334272,7 @@ We present multiTFA, a multivariate thermodynamics-based metabolic flux analysis
     biotools:primaryContact <http://orcid.org/0000-0002-0299-1165> .
 
 <https://bio.tools/multperf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_3293,
@@ -320917,7 +334288,7 @@ We present multiTFA, a multivariate thermodynamics-based metabolic flux analysis
     biotools:primaryContact "Dan Gusfield" .
 
 <https://bio.tools/multtest> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2269 ;
@@ -320935,7 +334306,7 @@ We present multiTFA, a multivariate thermodynamics-based metabolic flux analysis
     biotools:primaryContact "Katherine S. Pollard" .
 
 <https://bio.tools/mum> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Script" ;
     sc:applicationSubCategory edam:topic_0196,
@@ -320958,7 +334329,7 @@ Deletions (novel and mobile), insertions (novel and mobile) and tandem duplicati
     sc:url "https://github.com/SAMtoBAM/MUMandCo" .
 
 <https://bio.tools/mumer4> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3574 ;
@@ -320976,13 +334347,19 @@ Deletions (novel and mobile), insertions (novel and mobile) and tandem duplicati
         "Guillaume Marçais" .
 
 <https://bio.tools/mummer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0622,
         edam:topic_3168 ;
-    sc:citation <https://doi.org/10.1371/journal.pcbi.1005944>,
-        "pubmed:10325427" ;
+    sc:citation <https://doi.org/10.1093/nar/30.11.2478>,
+        <https://doi.org/10.1186/gb-2004-5-2-r12>,
+        <https://doi.org/10.1371/journal.pcbi.1005944>,
+        "pmcid:PMC117189",
+        "pmcid:PMC395750",
+        "pubmed:10325427",
+        "pubmed:12034836",
+        "pubmed:14759262" ;
     sc:description "MUMmer is a modular system for the rapid whole genome alignment of finished or draft sequence. Basically it is a ultra-fast alignment of large-scale DNA and protein sequences" ;
     sc:featureList edam:operation_0292,
         edam:operation_3198 ;
@@ -320996,7 +334373,7 @@ Deletions (novel and mobile), insertions (novel and mobile) and tandem duplicati
     biotools:primaryContact "Help list" .
 
 <https://bio.tools/mummergpu> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3308 ;
@@ -321009,7 +334386,7 @@ Deletions (novel and mobile), insertions (novel and mobile) and tandem duplicati
     biotools:primaryContact "Michael C Schatz" .
 
 <https://bio.tools/mumot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3315,
@@ -321031,7 +334408,7 @@ MuMoT (Multiscale Modelling Tool) is a tool designed to allow sophisticated math
     sc:url "http://github.com/DiODeProject/MuMoT/" .
 
 <https://bio.tools/mumrescuelite> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3169 ;
@@ -321048,7 +334425,7 @@ MuMoT (Multiscale Modelling Tool) is a tool designed to allow sophisticated math
     biotools:primaryContact "Support" .
 
 <https://bio.tools/mungesumstats> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3053,
@@ -321067,7 +334444,7 @@ MuMoT (Multiscale Modelling Tool) is a tool designed to allow sophisticated math
     sc:url "https://neurogenomics.github.io/MungeSumstats" .
 
 <https://bio.tools/mupet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3334,
         edam:topic_3338,
@@ -321087,7 +334464,7 @@ MuMoT (Multiscale Modelling Tool) is a tool designed to allow sophisticated math
     biotools:primaryContact "Pat Levitt" .
 
 <https://bio.tools/muplex> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0632,
@@ -321104,7 +334481,7 @@ MuMoT (Multiscale Modelling Tool) is a tool designed to allow sophisticated math
     sc:url "http://apps.diatomsoftware.com/muplex/html/MuPlex.html" .
 
 <https://bio.tools/mupred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0166,
@@ -321121,7 +334498,7 @@ MuMoT (Multiscale Modelling Tool) is a tool designed to allow sophisticated math
     sc:url "http://digbio.missouri.edu/mupred/" .
 
 <https://bio.tools/mupro> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0130,
         edam:topic_2533,
@@ -321140,8 +334517,28 @@ MuMoT (Multiscale Modelling Tool) is a tool designed to allow sophisticated math
         "Paul Rigor",
         "Pierre Baldi" .
 
+<https://bio.tools/mural> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0199,
+        edam:topic_0780,
+        edam:topic_3168,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1101/2021.10.25.465689> ;
+    sc:description "A deep learning-based framework for estimating fine-scale germline mutation rates." ;
+    sc:featureList edam:operation_3227,
+        edam:operation_3435,
+        edam:operation_3927 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "MuRaL" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/CaiLiLab/MuRaL" .
+
 <https://bio.tools/muren> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2269,
@@ -321165,7 +334562,7 @@ MuMoT (Multiscale Modelling Tool) is a tool designed to allow sophisticated math
     sc:url "http://github.com/hippo-yf/MUREN" .
 
 <https://bio.tools/musa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btl537> ;
@@ -321179,7 +334576,7 @@ MuMoT (Multiscale Modelling Tool) is a tool designed to allow sophisticated math
     sc:url "http://kdbio.inesc-id.pt/~ndm/software/musa.html" .
 
 <https://bio.tools/musa-r> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application",
         "Library" ;
@@ -321200,23 +334597,24 @@ MuMoT (Multiscale Modelling Tool) is a tool designed to allow sophisticated math
 
 <https://bio.tools/muscle> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3495" ;
-            sc:name "RNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3495" ],
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:encodingFormat "http://edamontology.org/format_1948" ;
+            sc:name "DNA sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3494" ;
-            sc:name "DNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3494" ] ;
+            sc:additionalType "http://edamontology.org/data_3495" ;
+            sc:encodingFormat "http://edamontology.org/format_1948" ;
+            sc:name "RNA sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1997" ;
+            sc:name "Sequence alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web API" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:author "Robert Edgar" ;
     sc:citation <https://doi.org/10.1093/nar/gkh340>,
+        <https://doi.org/10.1101/2021.06.20.449169>,
         <https://doi.org/10.1186/1471-2105-5-113>,
         <https://doi.org/10.7490/f1000research.1114334.1>,
         "pmcid:PMC390337",
@@ -321233,12 +334631,12 @@ MuMoT (Multiscale Modelling Tool) is a tool designed to allow sophisticated math
         <https://www.drive5.com/muscle/manual/>,
         <https://www.drive5.com/muscle/manual/install.html>,
         <https://www.ebi.ac.uk/seqdb/confluence/display/WEBSERVICES/muscle_rest> ;
-    sc:softwareVersion "3.16.0" ;
+    sc:softwareVersion "5" ;
     sc:url "https://www.drive5.com/muscle/" ;
     biotools:primaryContact "Robert Edgar" .
 
 <https://bio.tools/muscle-fascicle-tracking-ultrasound> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -321256,19 +334654,18 @@ MuMoT (Multiscale Modelling Tool) is a tool designed to allow sophisticated math
 
 <https://bio.tools/muscle_ebi> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:name "Sequence alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
-    sc:author "Robert Edgar",
-        "Web Production" ;
-    sc:citation <https://doi.org/10.1093/nar/gkh340> ;
+    sc:author "Job Dispatcher",
+        "Robert Edgar" ;
+    sc:citation <https://doi.org/10.1093/nar/gkac240>,
+        <https://doi.org/10.1093/nar/gkh340> ;
     sc:description "Sequence alignment using the Multiple Sequence Comparison by Log-Expectation (MUSCLE) method" ;
     sc:featureList edam:operation_0492 ;
     sc:name "MUSCLE (EBI)" ;
@@ -321280,18 +334677,16 @@ MuMoT (Multiscale Modelling Tool) is a tool designed to allow sophisticated math
         <http://www.ebi.ac.uk/about/terms-of-use> ;
     sc:softwareVersion "1" ;
     sc:url "http://www.ebi.ac.uk/Tools/msa/muscle/" ;
-    biotools:primaryContact "Web Production" .
+    biotools:primaryContact "Job Dispatcher Team" .
 
 <https://bio.tools/muscle_ws_jabaws> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:name "Sequence alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btr304> ;
@@ -321307,7 +334702,7 @@ MuMoT (Multiscale Modelling Tool) is a tool designed to allow sophisticated math
     sc:url "http://www.compbio.dundee.ac.uk/jabaws" .
 
 <https://bio.tools/muscleatlasexplorer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -321328,10 +334723,9 @@ MuscleAtlasExplorer(BETA)2.""" ;
 
 <https://bio.tools/museqbox> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0857" ;
-            sc:name "Sequence search results" ;
-            sc:sameAs "http://edamontology.org/data_0857" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0857" ;
+            sc:name "Sequence search results" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654 ;
@@ -321345,7 +334739,7 @@ MuscleAtlasExplorer(BETA)2.""" ;
     sc:url "http://brendelgroup.org/bioinformatics2go/MuSeqBox.php" .
 
 <https://bio.tools/musi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0654,
@@ -321363,7 +334757,7 @@ MuscleAtlasExplorer(BETA)2.""" ;
     sc:url "http://gobics.de/ingo/musi/musi.html" .
 
 <https://bio.tools/musi-bind> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3125,
@@ -321382,7 +334776,7 @@ MuscleAtlasExplorer(BETA)2.""" ;
         "TaeHyung Simon Kim" .
 
 <https://bio.tools/musica> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0622,
@@ -321400,7 +334794,7 @@ MuscleAtlasExplorer(BETA)2.""" ;
     biotools:primaryContact "Sergi Castellví-Bel" .
 
 <https://bio.tools/musica_2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:citation "pubmed:20479877" ;
@@ -321416,8 +334810,32 @@ MuscleAtlasExplorer(BETA)2.""" ;
         "Shin-ichi Morishita",
         "Yutaka Suzuki" .
 
+<https://bio.tools/musicatk> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0199,
+        edam:topic_0769,
+        edam:topic_2640,
+        edam:topic_3360 ;
+    sc:citation <https://doi.org/10.1158/0008-5472.CAN-21-0899>,
+        "pmcid:PMC8639789",
+        "pubmed:34625425" ;
+    sc:description "The Mutational Signature Comprehensive Analysis Toolkit (musicatk) for the Discovery, Prediction, and Exploration of Mutational Signatures." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3227,
+        edam:operation_3629 ;
+    sc:isAccessibleForFree true ;
+    sc:license "LGPL-3.0" ;
+    sc:name "musicatk" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://bioconductor.org/packages/release/bioc/manuals/musicatk/man/musicatk.pdf>,
+        <https://camplab.net/musicatk/v1.2.1/index.html> ;
+    sc:url "https://camplab.net/musicatk" .
+
 <https://bio.tools/musitedeep> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
@@ -321441,7 +334859,7 @@ The MusiteDeep web server is available at http://www.musite.net. This repository
     sc:url "https://www.musite.net" .
 
 <https://bio.tools/musket> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0654 ;
@@ -321455,8 +334873,28 @@ The MusiteDeep web server is available at http://www.musite.net. This repository
     sc:softwareVersion "1.1" ;
     sc:url "http://musket.sourceforge.net/" .
 
+<https://bio.tools/musmorph> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0625,
+        edam:topic_0769,
+        edam:topic_3384,
+        edam:topic_3444,
+        edam:topic_3452 ;
+    sc:citation <https://doi.org/10.1101/2021.11.11.468142> ;
+    sc:description "Database of standardized mouse morphology data for morphometric meta-analyses." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3196,
+        edam:operation_3435 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "MusMorph" ;
+    sc:operatingSystem "Linux",
+        "Mac" ;
+    sc:url "http://www.facebase.org" .
+
 <https://bio.tools/must> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654,
@@ -321471,7 +334909,7 @@ The MusiteDeep web server is available at http://www.musite.net. This repository
     sc:url "http://www.healthinformaticslab.org/supp/" .
 
 <https://bio.tools/mustache> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0749,
@@ -321490,7 +334928,7 @@ Mustache (Multi-scale Detection of Chromatin Loops from Hi-C and Micro-C Maps us
     sc:url "https://github.com/ay-lab/mustache" .
 
 <https://bio.tools/mustang> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_2814 ;
@@ -321504,7 +334942,7 @@ Mustache (Multi-scale Detection of Chromatin Loops from Hi-C and Micro-C Maps us
     biotools:primaryContact "Arun Konagurthu" .
 
 <https://bio.tools/mustard> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_3170,
@@ -321525,7 +334963,7 @@ MuStARD - autoMated SmAll Rna Detection.""" ;
     sc:url "http://gitlab.com/RBP_Bioinformatics/mustard" .
 
 <https://bio.tools/mustguseal> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0623,
@@ -321542,7 +334980,7 @@ MuStARD - autoMated SmAll Rna Detection.""" ;
     biotools:primaryContact "Vytas K Švedas" .
 
 <https://bio.tools/mustool> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3400 ;
     sc:citation <https://doi.org/10.1007/978-3-030-45190-5_8>,
@@ -321555,7 +334993,7 @@ MUST is a tool for online enumeration of minimal unsatisfiable subsets (MUSes) o
     sc:url "https://github.com/jar-ben/mustool" .
 
 <https://bio.tools/mutaid> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_3168,
@@ -321574,7 +335012,7 @@ MUST is a tool for online enumeration of minimal unsatisfiable subsets (MUSes) o
     biotools:primaryContact "Ram Vinay Pandey" .
 
 <https://bio.tools/mutalisk> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_3173 ;
@@ -321593,7 +335031,7 @@ MUST is a tool for online enumeration of minimal unsatisfiable subsets (MUSes) o
     biotools:primaryContact <https://orcid.org/0000-0002-7816-1299> .
 
 <https://bio.tools/mutalyzer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
@@ -321615,7 +335053,7 @@ MUST is a tool for online enumeration of minimal unsatisfiable subsets (MUSes) o
     biotools:primaryContact "Vis JK" .
 
 <https://bio.tools/mutalyzer_ws> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0085 ;
@@ -321630,7 +335068,7 @@ MUST is a tool for online enumeration of minimal unsatisfiable subsets (MUSes) o
     sc:url "https://mutalyzer.nl/soap-api" .
 
 <https://bio.tools/mutanalyst> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2533,
         edam:topic_3519,
@@ -321647,7 +335085,7 @@ MUST is a tool for online enumeration of minimal unsatisfiable subsets (MUSes) o
     biotools:primaryContact "Matteo P. Ferla" .
 
 <https://bio.tools/mutanome> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
@@ -321671,7 +335109,7 @@ A pharmacogenomics database for prioritizing actionable mutations for personaliz
     sc:url "https://mutanome.lerner.ccf.org" .
 
 <https://bio.tools/mutanthuntwgs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Script" ;
     sc:applicationSubCategory edam:topic_0199,
@@ -321691,7 +335129,7 @@ A bioinformatics pipeline for identification and characterization of mutations i
     sc:url "https://github.com/mae92/MutantHuntWGS" .
 
 <https://bio.tools/mutarget> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0203,
@@ -321712,7 +335150,7 @@ muTarget is a cancer biomarker / target discovery tool with two major functions.
     sc:url "http://www.mutarget.com" .
 
 <https://bio.tools/mutarna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0097,
@@ -321732,7 +335170,7 @@ MutaRNA (Mutational Analysis of RNAs) predicts and visualizes the mutation-induc
     sc:url "http://rna.informatik.uni-freiburg.de/MutaRNA" .
 
 <https://bio.tools/mutascope> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_2640 ;
@@ -321745,7 +335183,7 @@ MutaRNA (Mutational Analysis of RNAs) predicts and visualizes the mutation-induc
     biotools:primaryContact "Shawn Yost" .
 
 <https://bio.tools/mutation3d> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_2640,
@@ -321764,7 +335202,7 @@ MutaRNA (Mutational Analysis of RNAs) predicts and visualizes the mutation-induc
     biotools:primaryContact "Haiyuan Yu" .
 
 <https://bio.tools/mutationTCN> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_2269,
@@ -321784,7 +335222,7 @@ The code is compatible with tensorflow-gpu=1.10.0 and python=2.7""" ;
     sc:url "https://github.com/ha01994/mutationTCN" .
 
 <https://bio.tools/mutation_maker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0632,
@@ -321805,7 +335243,7 @@ Mutation Maker, An Open Source Oligo Design Software For Mutagenesis and De Novo
     sc:url "https://github.com/Merck/Mutation_Maker" .
 
 <https://bio.tools/mutation_taster> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0199,
@@ -321838,7 +335276,7 @@ Mutation Maker, An Open Source Oligo Design Software For Mutagenesis and De Novo
         "Jana Marie Schwarz" .
 
 <https://bio.tools/mutationaligner> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web API" ;
     sc:applicationSubCategory edam:topic_0736,
@@ -321859,7 +335297,7 @@ Mutation Maker, An Open Source Oligo Design Software For Mutagenesis and De Novo
     biotools:primaryContact "Support" .
 
 <https://bio.tools/mutationalpatterns> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0199,
@@ -321882,10 +335320,10 @@ Mutation Maker, An Open Source Oligo Design Software For Mutagenesis and De Novo
 
 <https://bio.tools/mutationdistiller> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0850" ;
-            sc:name "Sequence set" ;
-            sc:sameAs "http://edamontology.org/data_0850" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0850" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence set" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0199,
@@ -321908,7 +335346,7 @@ Mutation Maker, An Open Source Oligo Design Software For Mutagenesis and De Novo
     sc:url "https://www.mutationdistiller.org/" .
 
 <https://bio.tools/mutationexplorer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
@@ -321931,14 +335369,12 @@ MutationExplorer is currently most usable for breast cancer samples, since the r
 
 <https://bio.tools/mutationinfo> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2294" ;
-            sc:name "Sequence variation ID" ;
-            sc:sameAs "http://edamontology.org/data_2294" ] ;
+            sc:additionalType "http://edamontology.org/data_2294" ;
+            sc:name "Sequence variation ID" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2887" ;
-            sc:name "Nucleic acid sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2887" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2887" ;
+            sc:name "Nucleic acid sequence record" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0622 ;
@@ -321956,7 +335392,7 @@ MutationExplorer is currently most usable for breast cancer samples, since the r
     biotools:primaryContact "Alexandros Kanterakis" .
 
 <https://bio.tools/mutationmotif> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070 ;
     sc:citation <https://doi.org/10.7287/peerj.preprints.2236v3> ;
@@ -321972,7 +335408,7 @@ MutationExplorer is currently most usable for breast cancer samples, since the r
     biotools:primaryContact "Australia" .
 
 <https://bio.tools/mutations-meta-analyser> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0199 ;
     sc:description "Identifying potential mutations across target gene sequences." ;
@@ -321988,7 +335424,7 @@ MutationExplorer is currently most usable for breast cancer samples, since the r
     biotools:primaryContact <https://orcid.org/0000-0002-0222-4273> .
 
 <https://bio.tools/mutationtaster> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_1775 ;
@@ -322004,7 +335440,7 @@ MutationExplorer is currently most usable for breast cancer samples, since the r
     sc:url "http://www.mutationtaster.org/" .
 
 <https://bio.tools/mutcombinator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -322027,8 +335463,30 @@ MutCombinator enables us to practically identify mutated peptides from tandem ma
     sc:name "MutCombinator" ;
     sc:url "https://prix.hanyang.ac.kr/download/mutcombinator.jsp" .
 
+<https://bio.tools/mutcov> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0199,
+        edam:topic_0769,
+        edam:topic_0821,
+        edam:topic_2830 ;
+    sc:citation <https://doi.org/10.1016/J.COMPBIOMED.2022.105509>,
+        "pmcid:PMC8993498",
+        "pubmed:35421792" ;
+    sc:description "A pipeline for evaluating the effect of mutations in spike protein on infectivity and antigenicity of SARS-CoV-2." ;
+    sc:featureList edam:operation_0252,
+        edam:operation_0478,
+        edam:operation_0480 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "MutCov" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://jianglab.org.cn/MutCov" .
+
 <https://bio.tools/mutdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0114,
@@ -322052,14 +335510,14 @@ MutCombinator enables us to practically identify mutated peptides from tandem ma
 
 <https://bio.tools/mutect> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ] ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:encodingFormat "http://edamontology.org/format_1921" ;
+            sc:name "Nucleic acid sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2032" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_2640,
@@ -322078,7 +335536,7 @@ MutCombinator enables us to practically identify mutated peptides from tandem ma
     biotools:primaryContact "MuTect Support" .
 
 <https://bio.tools/mutenricher> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0622,
@@ -322104,7 +335562,7 @@ License: MIT License, see License.""" ;
     sc:url "https://github.com/asoltis/MutEnricher" .
 
 <https://bio.tools/mutexsl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_3307,
         edam:topic_3344 ;
@@ -322123,7 +335581,7 @@ License: MIT License, see License.""" ;
     biotools:primaryContact <http://orcid.org/0000-0002-0713-6723> .
 
 <https://bio.tools/mutlbsgenedb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0749,
@@ -322143,7 +335601,7 @@ License: MIT License, see License.""" ;
     biotools:primaryContact "Zhongming Zha" .
 
 <https://bio.tools/mutpred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0634 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btp528> ;
@@ -322158,7 +335616,7 @@ License: MIT License, see License.""" ;
     sc:url "http://mutpred.mutdb.org/" .
 
 <https://bio.tools/mutrank> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0602,
@@ -322180,7 +335638,7 @@ Transcriptomic data can uncover complex biological processes in part through the
     sc:url "https://github.com/eporetsky/MutRank" .
 
 <https://bio.tools/muts-needle-plot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_2533,
@@ -322198,8 +335656,31 @@ Transcriptomic data can uncover complex biological processes in part through the
     sc:url "https://github.com/bbglab/muts-needle-plot" ;
     biotools:primaryContact "Michael P Schroeder" .
 
+<https://bio.tools/mutscape> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0199,
+        edam:topic_0632,
+        edam:topic_2640,
+        edam:topic_3360,
+        edam:topic_3673 ;
+    sc:citation <https://doi.org/10.1093/NARGAB/LQAB099>,
+        "pmcid:PMC8559159",
+        "pubmed:34734182" ;
+    sc:description "An analytical toolkit for probing the mutational landscape in cancer genomics." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3227,
+        edam:operation_3695 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "MutScape" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/anitalu724/MutScape" .
+
 <https://bio.tools/mutscreener> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0632,
@@ -322214,7 +335695,7 @@ Transcriptomic data can uncover complex biological processes in part through the
     sc:url "http://bioinfo.bsd.uchicago.edu/MutScreener.html" .
 
 <https://bio.tools/mutsigmapper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0199,
@@ -322231,7 +335712,7 @@ R package mutSigMapper aims to resolve a critical shortcoming of existing softwa
     sc:url "https://github.com/juliancandia/mutSigMapper" .
 
 <https://bio.tools/mutsignatures> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0654,
@@ -322251,7 +335732,7 @@ Cancer cells accumulate DNA mutations as result of DNA damage and DNA repair pro
     sc:url "https://CRAN.R-project.org/package=mutSignatures" .
 
 <https://bio.tools/mutspace> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_2640,
@@ -322272,7 +335753,7 @@ MutSpace is a method aiming to address the computational challenge to consider l
     sc:url "https://github.com/ma-compbio/MutSpace" .
 
 <https://bio.tools/mutualfold> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0099,
@@ -322287,7 +335768,7 @@ MutSpace is a method aiming to address the computational challenge to consider l
     biotools:primaryContact "Cuncong Zhong" .
 
 <https://bio.tools/mutvis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0622,
@@ -322304,7 +335785,7 @@ MutSpace is a method aiming to address the computational challenge to consider l
     biotools:primaryContact "Vidya Niranjan" .
 
 <https://bio.tools/mutyper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2533,
         edam:topic_2885,
@@ -322331,7 +335812,7 @@ Ancestral k-mer mutation types for SNP data.""" ;
     sc:url "https://harrispopgen.github.io/mutyper" .
 
 <https://bio.tools/muvis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_2269,
@@ -322351,7 +335832,7 @@ muvis is a visualization and analysis toolkit for multivariate datasets. To use
     sc:url "https://github.com/bAIo-lab/muvis" .
 
 <https://bio.tools/muwu> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0625,
@@ -322373,18 +335854,18 @@ muvis is a visualization and analysis toolkit for multivariate datasets. To use
 
 <https://bio.tools/muxquant> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ],
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_3655" ;
+            sc:name "Peptide identification" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3654" ;
+            sc:name "Mass spectrometry spectra" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Expression data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -322402,7 +335883,7 @@ muvis is a visualization and analysis toolkit for multivariate datasets. To use
     sc:url "http://www.ms-utils.org/muxQuant" .
 
 <https://bio.tools/mvbimbam> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3517 ;
     sc:citation <https://doi.org/10.1371/journal.pone.0065245>,
@@ -322417,7 +335898,7 @@ muvis is a visualization and analysis toolkit for multivariate datasets. To use
     sc:url "https://github.com/heejungshim/mvBIMBAM" .
 
 <https://bio.tools/mvbiodatasim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3070 ;
     sc:citation <https://doi.org/10.1186/s12859-015-0577-1>,
@@ -322438,7 +335919,7 @@ muvis is a visualization and analysis toolkit for multivariate datasets. To use
         "Roberto Tagliaferri" .
 
 <https://bio.tools/mvcclass> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3071 ;
@@ -322456,7 +335937,7 @@ muvis is a visualization and analysis toolkit for multivariate datasets. To use
     biotools:primaryContact "Elizabeth Whalen" .
 
 <https://bio.tools/mvda> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3070 ;
     sc:author "Angela Serra" ;
@@ -322474,7 +335955,7 @@ muvis is a visualization and analysis toolkit for multivariate datasets. To use
         "Roberto Tagliaferri" .
 
 <https://bio.tools/mvgcn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0634,
@@ -322493,7 +335974,7 @@ muvis is a visualization and analysis toolkit for multivariate datasets. To use
     sc:url "https://github.com/fuhaitao95/MVGCN" .
 
 <https://bio.tools/mvgst> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0085,
@@ -322511,8 +335992,31 @@ muvis is a visualization and analysis toolkit for multivariate datasets. To use
     sc:url "http://bioconductor.org/packages/release/bioc/html/mvGST.html" ;
     biotools:primaryContact "John R. Stevens" .
 
+<https://bio.tools/mvib> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0634,
+        edam:topic_3174,
+        edam:topic_3474,
+        edam:topic_3520,
+        edam:topic_3697 ;
+    sc:citation <https://doi.org/10.1371/JOURNAL.PCBI.1010050>,
+        "pmcid:PMC9022840",
+        "pubmed:35404958" ;
+    sc:description "Microbiome-based disease prediction with multimodal variational information bottlenecks." ;
+    sc:featureList edam:operation_3359,
+        edam:operation_3891,
+        edam:operation_3935 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "MVIB" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/nec-research/microbiome-mvib" .
+
 <https://bio.tools/mvic-combination-generator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:description "Normalization tests for shoulder electromyographic signals" ;
     sc:featureList edam:operation_3435 ;
@@ -322525,7 +336029,7 @@ muvis is a visualization and analysis toolkit for multivariate datasets. To use
     biotools:primaryContact "Fabien" .
 
 <https://bio.tools/mview_api_ebi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/14.4.380> ;
@@ -322541,24 +336045,24 @@ muvis is a visualization and analysis toolkit for multivariate datasets. To use
 
 <https://bio.tools/mview_ebi> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1948" ;
+            sc:name "Sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0857" ;
-            sc:name "Sequence search results" ;
-            sc:sameAs "http://edamontology.org/data_0857" ] ;
+            sc:additionalType "http://edamontology.org/data_0857" ;
+            sc:encodingFormat "http://edamontology.org/format_1948" ;
+            sc:name "Sequence search results" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:name "Sequence alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_3071 ;
-    sc:author "Nigel Brown",
-        "Web Production" ;
-    sc:citation <https://doi.org/10.1093/bioinformatics/14.4.380> ;
+    sc:author "Job Dispatcher",
+        "Nigel Brown" ;
+    sc:citation <https://doi.org/10.1093/bioinformatics/14.4.380>,
+        <https://doi.org/10.1093/nar/gkac240> ;
     sc:description "Reformat the results of a sequence database search (BLAST, FASTA) or a multiple alignment adding optional HTML markup to control colouring and web page layout." ;
     sc:featureList edam:operation_0335 ;
     sc:name "MView (EBI)" ;
@@ -322570,10 +336074,33 @@ muvis is a visualization and analysis toolkit for multivariate datasets. To use
         <http://www.ebi.ac.uk/about/terms-of-use> ;
     sc:softwareVersion "1" ;
     sc:url "http://www.ebi.ac.uk/Tools/msa/mview/" ;
-    biotools:primaryContact "Web Production" .
+    biotools:primaryContact "Job Dispatcher Team" .
+
+<https://bio.tools/mvip> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0622,
+        edam:topic_3169,
+        edam:topic_3170,
+        edam:topic_3320,
+        edam:topic_3794 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAB958>,
+        "pmcid:PMC8689837",
+        "pubmed:34718748" ;
+    sc:description "MVIP provides a large number of available multi-omics data under viral infection in various species." ;
+    sc:featureList edam:operation_2422,
+        edam:operation_3208,
+        edam:operation_3223 ;
+    sc:isAccessibleForFree true ;
+    sc:name "MVIP" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://mvip.whu.edu.cn/" .
 
 <https://bio.tools/mvp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_2275 ;
@@ -322588,7 +336115,7 @@ muvis is a visualization and analysis toolkit for multivariate datasets. To use
     sc:url "http://zhanglab.ccmb.med.umich.edu/MVP/" .
 
 <https://bio.tools/mvp_a> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -322606,7 +336133,7 @@ The Galaxy MVP visualization plugin enables viewing of results produced from wor
     sc:url "https://github.com/galaxyproteomics/mvpapplication-git.git" .
 
 <https://bio.tools/mvpa-light> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3384,
@@ -322627,7 +336154,7 @@ This is the companion repository of the MVPA-Light paper.""" ;
     sc:url "http://github.com/treder/mvpa-light" .
 
 <https://bio.tools/mvpalab> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3361,
@@ -322649,8 +336176,27 @@ This is the companion repository of the MVPA-Light paper.""" ;
         <https://github.com/dlopezg/mvpalab/wiki> ;
     sc:url "https://github.com/dlopezg/mvpalab" .
 
+<https://bio.tools/mvppt> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0625,
+        edam:topic_3168,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1016/J.GPB.2022.07.005>,
+        "pubmed:35940520" ;
+    sc:description "A highly efficient and sensitive pathogenicity prediction tool for missense variants." ;
+    sc:featureList edam:operation_3196,
+        edam:operation_3225,
+        edam:operation_3461 ;
+    sc:isAccessibleForFree true ;
+    sc:name "mvPPT" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://www.mvppt.club" .
+
 <https://bio.tools/mvqtlcim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0102,
@@ -322668,7 +336214,7 @@ This is the companion repository of the MVPA-Light paper.""" ;
         "Fenxiang Liu" .
 
 <https://bio.tools/mvse> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3305,
         edam:topic_3315,
@@ -322687,7 +336233,7 @@ Understanding how climate dictates the timing and potential of mosquito-borne vi
     sc:url "http://sourceforge.net/projects/mvse/" .
 
 <https://bio.tools/mvsim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:citation <https://doi.org/10.1101/2021.08.01.454686>,
         "pmcid:PMC8351779",
@@ -322705,7 +336251,7 @@ Understanding how climate dictates the timing and potential of mosquito-borne vi
     sc:url "https://sarkarlab.github.io/MVsim/" .
 
 <https://bio.tools/mwastools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0153,
         edam:topic_2258,
@@ -322726,14 +336272,12 @@ Understanding how climate dictates the timing and potential of mosquito-borne vi
 
 <https://bio.tools/mwcontam> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1505" ;
-            sc:name "Amino acid index (molecular weight)" ;
-            sc:sameAs "http://edamontology.org/data_1505" ] ;
+            sc:additionalType "http://edamontology.org/data_1505" ;
+            sc:name "Amino acid index (molecular weight)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1505" ;
-            sc:name "Amino acid index (molecular weight)" ;
-            sc:sameAs "http://edamontology.org/data_1505" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1505" ;
+            sc:name "Amino acid index (molecular weight)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0157 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -322764,18 +336308,15 @@ Understanding how climate dictates the timing and potential of mosquito-borne vi
 
 <https://bio.tools/mwfilter> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0944" ;
-            sc:name "Peptide mass fingerprint" ;
-            sc:sameAs "http://edamontology.org/data_0944" ],
+            sc:additionalType "http://edamontology.org/data_1505" ;
+            sc:name "Amino acid index (molecular weight)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1505" ;
-            sc:name "Amino acid index (molecular weight)" ;
-            sc:sameAs "http://edamontology.org/data_1505" ] ;
+            sc:additionalType "http://edamontology.org/data_0944" ;
+            sc:name "Peptide mass fingerprint" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1505" ;
-            sc:name "Amino acid index (molecular weight)" ;
-            sc:sameAs "http://edamontology.org/data_1505" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1505" ;
+            sc:name "Amino acid index (molecular weight)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0157 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -322805,7 +336346,7 @@ Understanding how climate dictates the timing and potential of mosquito-borne vi
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/mwfilter.html" .
 
 <https://bio.tools/mwise> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3172,
@@ -322825,7 +336366,7 @@ Understanding how climate dictates the timing and potential of mosquito-borne vi
     sc:url "https://github.com/b2slab/mWISE" .
 
 <https://bio.tools/mwmm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_2640,
         edam:topic_3512 ;
@@ -322840,7 +336381,7 @@ Understanding how climate dictates the timing and potential of mosquito-borne vi
     sc:url "https://github.com/BaiLab/MWMM" .
 
 <https://bio.tools/mwt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3277 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btn100> ;
@@ -322854,7 +336395,7 @@ Understanding how climate dictates the timing and potential of mosquito-borne vi
     sc:url "http://fafner.meb.ki.se/personal/yudpaw/?page_id=13" .
 
 <https://bio.tools/mwtab> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -322878,7 +336419,7 @@ Understanding how climate dictates the timing and potential of mosquito-borne vi
         <https://orcid.org/0000-0003-3995-5368> .
 
 <https://bio.tools/mwwtest> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3474 ;
@@ -322895,14 +336436,13 @@ Understanding how climate dictates the timing and potential of mosquito-borne vi
 
 <https://bio.tools/mxm> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Gene expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ] ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Gene expression data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0950" ;
-            sc:name "Mathematical model" ;
-            sc:sameAs "http://edamontology.org/data_0950" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0950" ;
+            sc:name "Mathematical model" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269 ;
     sc:author "Giorgos Athineou",
@@ -322926,7 +336466,7 @@ Understanding how climate dictates the timing and potential of mosquito-borne vi
     biotools:primaryContact "Michail Tsagris" .
 
 <https://bio.tools/my-closure> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0602,
@@ -322943,7 +336483,7 @@ Understanding how climate dictates the timing and potential of mosquito-borne vi
     biotools:primaryContact "Qiong Wu" .
 
 <https://bio.tools/myDGR> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0605,
@@ -322968,18 +336508,16 @@ Understanding how climate dictates the timing and potential of mosquito-borne vi
 
 <https://bio.tools/my_forensic_loci_queries> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ] ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Nucleic acid sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ],
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:name "Image" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0916" ;
-            sc:name "Gene report" ;
-            sc:sameAs "http://edamontology.org/data_0916" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0916" ;
+            sc:name "Gene report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_3511 ;
@@ -322994,8 +336532,32 @@ Understanding how climate dictates the timing and potential of mosquito-borne vi
     sc:softwareVersion "1.1" ;
     sc:url "https://github.com/beukueb/myflq" .
 
+<https://bio.tools/myb> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0196,
+        edam:topic_0623,
+        edam:topic_0780,
+        edam:topic_3293 ;
+    sc:citation <https://doi.org/10.1186/s12864-022-08452-5>,
+        "pmcid:PMC8933966",
+        "pubmed:35305581" ;
+    sc:description "This tool performs an automatic identification, annotation, and analysis of the MYB gene family in plants. It can be applied to new transcriptome of genome assemblies." ;
+    sc:featureList edam:operation_0525,
+        edam:operation_3192,
+        edam:operation_3258,
+        edam:operation_3631 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "MYB" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/bpucker/MYB_annotator" .
+
 <https://bio.tools/mybs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0749,
@@ -323015,8 +336577,30 @@ Understanding how climate dictates the timing and potential of mosquito-borne vi
     sc:url "http://bits.iis.sinica.edu.tw/~mybs/" ;
     biotools:primaryContact "MYBS team" .
 
+<https://bio.tools/mycc> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
+    bsc:output [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_3768" ;
+            sc:name "Clustered expression profiles" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_3837 ;
+    sc:description "MyCC is built and delivered as a tailored solution for metagenomics sequencesclassfication" ;
+    sc:featureList edam:operation_2995 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "mycc" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://sourceforge.net/projects/sb2nhri/files/MyCC/manual%20of%20MyCC.pdf/download> ;
+    sc:url "https://sourceforge.net/projects/sb2nhri/files/MyCC/" .
+
 <https://bio.tools/mycelyso> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3297,
         edam:topic_3382,
@@ -323031,7 +336615,7 @@ Understanding how climate dictates the timing and potential of mosquito-borne vi
     sc:url "https://github.com/modsim/mycelyso" .
 
 <https://bio.tools/myclade> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0736,
@@ -323051,7 +336635,7 @@ Understanding how climate dictates the timing and potential of mosquito-borne vi
     biotools:primaryContact <https://orcid.org/0000-0003-2098-5743> .
 
 <https://bio.tools/mycocsm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3047,
         edam:topic_3299,
@@ -323070,7 +336654,7 @@ Douglas E. V. Pires & David B. Ascher.""" ;
     sc:url "http://biosig.unimelb.edu.au/myco_csm" .
 
 <https://bio.tools/mycomemsvm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0820,
@@ -323086,8 +336670,43 @@ Douglas E. V. Pires & David B. Ascher.""" ;
     sc:url "http://lin.uestc.edu.cn/server/MycoMemSVM" ;
     biotools:primaryContact "Hao Lin" .
 
+<https://bio.tools/mycoprint> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:description "MycoPrint is a web interface for exploration of the interactome of Mycobacterium tuberculosis H37Rv (Mtb) predicted by \"Domain Interaction Mapping\" (DIM) method." ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "mycoprint" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/mycoprint/index.html> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/mycoprint/index.html" .
+
+<https://bio.tools/mycosnp> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0769,
+        edam:topic_2885,
+        edam:topic_3305,
+        edam:topic_3316,
+        edam:topic_3673 ;
+    sc:citation <https://doi.org/10.1007/978-1-0716-2417-3_17>,
+        "pubmed:35674957" ;
+    sc:description "A Portable Workflow for Performing Whole-Genome Sequencing Analysis of Candida auris." ;
+    sc:featureList edam:operation_0484,
+        edam:operation_3192,
+        edam:operation_3196,
+        edam:operation_3211 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Apache-2.0" ;
+    sc:name "MycoSNP" ;
+    sc:operatingSystem "Linux" ;
+    sc:softwareHelp <https://github.com/CDCgov/mycosnp/blob/master/code-of-conduct.md> ;
+    sc:url "https://github.com/CDCgov/mycosnp" .
+
 <https://bio.tools/mycosub> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_2229,
@@ -323104,7 +336723,7 @@ Douglas E. V. Pires & David B. Ascher.""" ;
     biotools:primaryContact "Hao Lin" .
 
 <https://bio.tools/mycov> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0637,
@@ -323125,7 +336744,7 @@ The ‘MyCoV’ package will currently only work in a linux environment. Essenti
     sc:url "https://github.com/dw974/MyCoV" .
 
 <https://bio.tools/myeltracer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0611,
         edam:topic_0625,
@@ -323146,7 +336765,7 @@ The ‘MyCoV’ package will currently only work in a linux environment. Essenti
     sc:url "https://github.com/HarrisonAllen/MyelTracer" .
 
 <https://bio.tools/myexperiment> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0091,
@@ -323167,18 +336786,18 @@ The ‘MyCoV’ package will currently only work in a linux environment. Essenti
 
 <https://bio.tools/mygene> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1026" ;
-            sc:name "Gene symbol" ;
-            sc:sameAs "http://edamontology.org/data_1026" ] ;
+            sc:additionalType "http://edamontology.org/data_1026" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "Gene symbol" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1027" ;
-            sc:name "Gene ID (NCBI)" ;
-            sc:sameAs "http://edamontology.org/data_1027" ],
+            sc:additionalType "http://edamontology.org/data_1027" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "Gene ID (NCBI)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1033" ;
-            sc:name "Ensembl gene ID" ;
-            sc:sameAs "http://edamontology.org/data_1033" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1033" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "Ensembl gene ID" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3321 ;
@@ -323198,10 +336817,9 @@ The ‘MyCoV’ package will currently only work in a linux environment. Essenti
 
 <https://bio.tools/mygenomebrowser> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:name "Sequence features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0091 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btw800>,
@@ -323220,7 +336838,7 @@ The ‘MyCoV’ package will currently only work in a linux environment. Essenti
     biotools:primaryContact <http://orcid.org/0000-0002-2348-0778> .
 
 <https://bio.tools/myhits> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0736 ;
@@ -323238,7 +336856,7 @@ The ‘MyCoV’ package will currently only work in a linux environment. Essenti
     biotools:primaryContact <http://orcid.org/0000-0001-9292-9463> .
 
 <https://bio.tools/myminer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3473 ;
@@ -323257,18 +336875,15 @@ The ‘MyCoV’ package will currently only work in a linux environment. Essenti
 
 <https://bio.tools/myodata> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2099" ;
-            sc:name "Name" ;
-            sc:sameAs "http://edamontology.org/data_2099" ],
+            sc:additionalType "http://edamontology.org/data_1033" ;
+            sc:name "Ensembl gene ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1033" ;
-            sc:name "Ensembl gene ID" ;
-            sc:sameAs "http://edamontology.org/data_1033" ],
+            sc:additionalType "http://edamontology.org/data_1026" ;
+            sc:name "Gene symbol" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1026" ;
-            sc:name "Gene symbol" ;
-            sc:sameAs "http://edamontology.org/data_1026" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2099" ;
+            sc:name "Name" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -323291,7 +336906,7 @@ The ‘MyCoV’ package will currently only work in a linux environment. Essenti
     sc:url "https://myodata.bio.unipd.it" .
 
 <https://bio.tools/myoexplorer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_3170,
@@ -323309,7 +336924,7 @@ This repository contains the companion code for recreating the single nucleus an
     sc:url "http://bimsbstatic.mdc-berlin.de/akalin/MyoExplorer/mm10.Seurat.RDS" .
 
 <https://bio.tools/myominer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0602,
@@ -323331,7 +336946,7 @@ Co-expression analyses will help muscle researchers to delineate the tissue-, ce
     sc:url "https://www.sys-myo.com/myominer" .
 
 <https://bio.tools/myomirdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0634,
@@ -323353,7 +336968,7 @@ Defence Institute of Physiology and Allied Sciences,.""" ;
     sc:url "http://www.myomirdb.in/" .
 
 <https://bio.tools/myosoft> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_3067,
         edam:topic_3382,
@@ -323369,8 +336984,30 @@ automated muscle histology analysis using machine learning algorithm utilizing F
     sc:name "Myosoft" ;
     sc:url "https://github.com/Hyojung-Choo/Myosoft/tree/Myosoft-hub" .
 
+<https://bio.tools/myotube_analyzer> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Desktop application" ;
+    sc:applicationSubCategory edam:topic_2229,
+        edam:topic_3340,
+        edam:topic_3382 ;
+    sc:citation <https://doi.org/10.1186/S13395-022-00297-6>,
+        "pmcid:PMC9185954",
+        "pubmed:35689270" ;
+    sc:description "The Myotube Analyzer is an open source app made specifically for the analysis of microscopic images taken of muscle stem cell cultures." ;
+    sc:featureList edam:operation_3096,
+        edam:operation_3443,
+        edam:operation_3799 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "Myotube Analyzer" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://github.com/SimonNoe/myotube-analyzer-app/blob/main/Manual.md> ;
+    sc:url "https://github.com/SimonNoe/myotube-analyzer-app" .
+
 <https://bio.tools/myphylodb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3071,
         edam:topic_3361,
@@ -323386,8 +337023,39 @@ automated muscle histology analysis using machine learning algorithm utilizing F
     sc:url "http://www.myphylodb.org/" ;
     biotools:primaryContact "Daniel Manter" .
 
+<https://bio.tools/myprosle> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_3112" ;
+            sc:encodingFormat "http://edamontology.org/format_1964" ;
+            sc:name "Gene expression matrix" ] ;
+    bsc:output [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1772" ;
+            sc:name "Score" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2082" ;
+            sc:name "Matrix" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0804,
+        edam:topic_3308,
+        edam:topic_3379 ;
+    sc:description "MyPROSLE was developed with the aim of bringing molecular information from patients to clinical practice. For this, we have created a new methodology to summarize the transcriptome of individual patients in a series of biological functions or gene-modules, which were later used to predict up to a total of 111 different clinical outcomes, including clinical manifestations, laboratory measurements, cytokine levels, autoantibodies, cell percentages, nearby disease flares and response to drugs." ;
+    sc:featureList edam:operation_2437,
+        edam:operation_2495,
+        edam:operation_3928,
+        edam:operation_3929 ;
+    sc:isAccessibleForFree true ;
+    sc:name "MyPROSLE" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://myprosle.genyo.es/" .
+
 <https://bio.tools/myproteinnet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0203,
@@ -323412,7 +337080,7 @@ automated muscle histology analysis using machine learning algorithm utilizing F
     biotools:primaryContact "Esti Yeger-Lotem" .
 
 <https://bio.tools/myriads> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_2269,
@@ -323429,7 +337097,7 @@ automated muscle histology analysis using machine learning algorithm utilizing F
     biotools:primaryContact "Support" .
 
 <https://bio.tools/myrialign> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102 ;
     sc:description """Software to align short reads produced by a short read genome sequencer to a reference genome. It performs brute force alignment using a variant on the "bitap" algorithm that aligns several thousand reads to a reference in parallel. It uses bit-parallelism, multiple processors, and Cell SPUs if available.
@@ -323445,18 +337113,18 @@ It will find alignments with any number of errors up to a user specified cutoff.
 
 <https://bio.tools/myrimatch> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1233" ;
-            sc:name "Sequence set (protein)" ;
-            sc:sameAs "http://edamontology.org/data_1233" ],
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3654" ;
+            sc:name "Mass spectrometry spectra" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
+            sc:additionalType "http://edamontology.org/data_1233" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence set (protein)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_3655" ;
+            sc:name "Peptide identification" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -323474,7 +337142,7 @@ It will find alignments with any number of errors up to a user specified cutoff.
     sc:url "https://medschool.vanderbilt.edu/msrc-bioinformatics/myrimatch-source" .
 
 <https://bio.tools/myrna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_3170 ;
     sc:citation "pubmed:20701754" ;
@@ -323486,7 +337154,7 @@ It will find alignments with any number of errors up to a user specified cutoff.
     biotools:primaryContact "Ben Langmead" .
 
 <https://bio.tools/myrt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0749,
@@ -323504,7 +337172,7 @@ It will find alignments with any number of errors up to a user specified cutoff.
     sc:url "https://omics.sice.indiana.edu/myRT/" .
 
 <https://bio.tools/mysort> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3170,
@@ -323522,7 +337190,7 @@ Copyright © 2021 Institute of Information Science, Academia Sinica, TAIWAN."""
     sc:url "https://symbiosis.iis.sinica.edu.tw/mySORT/" .
 
 <https://bio.tools/myssp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0654,
@@ -323537,7 +337205,7 @@ Copyright © 2021 Institute of Information Science, Academia Sinica, TAIWAN."""
     biotools:primaryContact "Michael S. Rosenberg" .
 
 <https://bio.tools/mysyntenyportal> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0797,
@@ -323554,22 +337222,22 @@ Copyright © 2021 Institute of Information Science, Academia Sinica, TAIWAN."""
 
 <https://bio.tools/myvariant> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0954" ;
-            sc:name "Database cross-mapping" ;
-            sc:sameAs "http://edamontology.org/data_0954" ],
+            sc:additionalType "http://edamontology.org/data_2082" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Matrix" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2082" ;
-            sc:name "Matrix" ;
-            sc:sameAs "http://edamontology.org/data_2082" ] ;
+            sc:additionalType "http://edamontology.org/data_0954" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Database cross-mapping" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2872" ;
-            sc:name "ID list" ;
-            sc:sameAs "http://edamontology.org/data_2872" ],
+            sc:additionalType "http://edamontology.org/data_0954" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "Database cross-mapping" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0954" ;
-            sc:name "Database cross-mapping" ;
-            sc:sameAs "http://edamontology.org/data_0954" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2872" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "ID list" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0091,
@@ -323590,7 +337258,7 @@ Copyright © 2021 Institute of Information Science, Academia Sinica, TAIWAN."""
     biotools:primaryContact "Chunlei Wu" .
 
 <https://bio.tools/myvcf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_2533,
@@ -323609,14 +337277,14 @@ Copyright © 2021 Institute of Information Science, Academia Sinica, TAIWAN."""
 
 <https://bio.tools/mz2mgf> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3834" ;
+            sc:name "Mass spectrometry spectra" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3651" ;
+            sc:name "Mass spectrometry spectra" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -323631,14 +337299,14 @@ Copyright © 2021 Institute of Information Science, Academia Sinica, TAIWAN."""
 
 <https://bio.tools/mzBruker> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3245" ;
+            sc:name "Mass spectrometry spectra" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3654" ;
+            sc:name "Mass spectrometry spectra" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -323650,14 +337318,14 @@ Copyright © 2021 Institute of Information Science, Academia Sinica, TAIWAN."""
 
 <https://bio.tools/mzWiff> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3710" ;
+            sc:name "Mass spectrometry spectra" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3654" ;
+            sc:name "Mass spectrometry spectra" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -323670,14 +337338,14 @@ Copyright © 2021 Institute of Information Science, Academia Sinica, TAIWAN."""
 
 <https://bio.tools/mzXML2Search> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3654" ;
+            sc:name "Mass spectrometry spectra" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3653" ;
+            sc:name "Mass spectrometry spectra" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -323689,7 +337357,7 @@ Copyright © 2021 Institute of Information Science, Academia Sinica, TAIWAN."""
     sc:url "http://tools.proteomecenter.org/wiki/index.php?title=Software:MzXML2Search" .
 
 <https://bio.tools/mzextract> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3172 ;
     sc:citation <https://doi.org/10.1016/j.aca.2013.09.028> ;
@@ -323707,7 +337375,7 @@ Copyright © 2021 Institute of Information Science, Academia Sinica, TAIWAN."""
     biotools:primaryContact "Christoph M. Becker" .
 
 <https://bio.tools/mzid> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3071 ;
@@ -323724,12 +337392,34 @@ Copyright © 2021 Institute of Information Science, Academia Sinica, TAIWAN."""
     sc:url "http://bioconductor.org/packages/release/bioc/html/mzID.html" ;
     biotools:primaryContact "Thomas Lin Pedersen" .
 
+<https://bio.tools/mzinbva> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0121,
+        edam:topic_2269,
+        edam:topic_3174,
+        edam:topic_3697,
+        edam:topic_3941 ;
+    sc:citation <https://doi.org/10.1093/BIB/BBAB443>,
+        "pubmed:34718406" ;
+    sc:description "Variational approximation for multilevel zero-inflated negative-binomial models for association analysis in microbiome surveys." ;
+    sc:featureList edam:operation_2238,
+        edam:operation_3454,
+        edam:operation_3799 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "MZINBVA" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/liudoubletian/MZINBVA" .
+
 <https://bio.tools/mzjava> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3651" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -323747,10 +337437,10 @@ Copyright © 2021 Institute of Information Science, Academia Sinica, TAIWAN."""
 
 <https://bio.tools/mzkit> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:encodingFormat "http://edamontology.org/format_3244" ;
+            sc:name "Mass spectrometry data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3172,
         edam:topic_3370,
@@ -323768,7 +337458,7 @@ Copyright © 2021 Institute of Information Science, Academia Sinica, TAIWAN."""
     sc:url "https://mzkit.org/" .
 
 <https://bio.tools/mzmatch> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3172,
         edam:topic_3365,
@@ -323786,30 +337476,30 @@ Copyright © 2021 Institute of Information Science, Academia Sinica, TAIWAN."""
 
 <https://bio.tools/mzmine> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ],
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3650" ;
+            sc:name "Mass spectrometry spectra" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3650" ;
+            sc:name "Mass spectrometry spectra" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0944" ;
-            sc:name "Peptide mass fingerprint" ;
-            sc:sameAs "http://edamontology.org/data_0944" ],
+            sc:additionalType "http://edamontology.org/data_1636" ;
+            sc:encodingFormat "http://edamontology.org/format_3604" ;
+            sc:name "Heat map" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ],
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3604" ;
+            sc:name "Image" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1636" ;
-            sc:name "Heat map" ;
-            sc:sameAs "http://edamontology.org/data_1636" ],
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3604" ;
+            sc:name "Plot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0944" ;
+            sc:encodingFormat "http://edamontology.org/format_3681" ;
+            sc:name "Peptide mass fingerprint" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -323839,7 +337529,7 @@ Copyright © 2021 Institute of Information Science, Academia Sinica, TAIWAN."""
     sc:url "http://mzmine.sourceforge.net" .
 
 <https://bio.tools/mzqlibrary> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -323853,7 +337543,7 @@ Copyright © 2021 Institute of Information Science, Academia Sinica, TAIWAN."""
     sc:url "http://www.psidev.info/mzquantml" .
 
 <https://bio.tools/mzr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -323878,7 +337568,7 @@ Copyright © 2021 Institute of Information Science, Academia Sinica, TAIWAN."""
         "Steffen Neumann" .
 
 <https://bio.tools/mzrapp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3172,
@@ -323897,18 +337587,18 @@ Copyright © 2021 Institute of Information Science, Academia Sinica, TAIWAN."""
 
 <https://bio.tools/mzrecal> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ],
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3244" ;
+            sc:name "Mass spectrum" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrum" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_3247" ;
+            sc:name "Peptide identification" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrum" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3244" ;
+            sc:name "Mass spectrum" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btab056>,
@@ -323925,7 +337615,7 @@ Copyright © 2021 Institute of Information Science, Academia Sinica, TAIWAN."""
     sc:url "https://github.com/524D/mzrecal/" .
 
 <https://bio.tools/mzrtsim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3172,
         edam:topic_3518,
@@ -323944,7 +337634,7 @@ The goal of mzrtsim is to make batch effects simulation for LC/GC-MS based peaks
     sc:url "https://github.com/yufree/mzrtsim" .
 
 <https://bio.tools/mzs_tools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
@@ -323964,14 +337654,14 @@ The goal of mzrtsim is to make batch effects simulation for LC/GC-MS based peaks
 
 <https://bio.tools/mzstar> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3710" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3654" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3520 ;
     sc:citation <https://doi.org/10.1186/1471-2105-5-162> ;
@@ -323984,18 +337674,18 @@ The goal of mzrtsim is to make batch effects simulation for LC/GC-MS based peaks
 
 <https://bio.tools/mzvar> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1276" ;
-            sc:name "Nucleic acid features" ;
-            sc:sameAs "http://edamontology.org/data_1276" ],
+            sc:additionalType "http://edamontology.org/data_1234" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence set (nucleic acid)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1234" ;
-            sc:name "Sequence set (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1234" ] ;
+            sc:additionalType "http://edamontology.org/data_1276" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Nucleic acid features" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0850" ;
-            sc:name "Sequence set" ;
-            sc:sameAs "http://edamontology.org/data_0850" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0850" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence set" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0622 ;
@@ -324014,16 +337704,31 @@ The goal of mzrtsim is to make batch effects simulation for LC/GC-MS based peaks
     sc:url "https://bitbucket.org/sib-pig/mzvar-public/src/master/" ;
     biotools:primaryContact <https://orcid.org/0000-0001-6548-709X> .
 
+<https://bio.tools/mzviewer> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Desktop application" ;
+    sc:applicationSubCategory edam:topic_0092,
+        edam:topic_3520 ;
+    sc:description "MZViewer is a lightweight viewer for mzData mass spec files. It is not designed to be a full analysis application, but rather to provide a quick view of mzData files." ;
+    sc:featureList edam:operation_3694 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-2.0" ;
+    sc:name "mzviewer" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://www.bioinformatics.babraham.ac.uk/projects/mzviewer/" .
+
 <https://bio.tools/mzxml_viewer> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3654" ;
+            sc:name "Mass spectrometry spectra" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3603" ;
+            sc:name "Mass spectrometry spectra" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3382,
@@ -324039,14 +337744,14 @@ The goal of mzrtsim is to make batch effects simulation for LC/GC-MS based peaks
 
 <https://bio.tools/mzxmlplot> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3654" ;
+            sc:name "Mass spectrometry spectra" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1636" ;
-            sc:name "Heat map" ;
-            sc:sameAs "http://edamontology.org/data_1636" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1636" ;
+            sc:encodingFormat "http://edamontology.org/format_3603" ;
+            sc:name "Heat map" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_3520 ;
@@ -324061,7 +337766,7 @@ The goal of mzrtsim is to make batch effects simulation for LC/GC-MS based peaks
     sc:url "http://www.ms-utils.org/mzXMLplot/index.html" .
 
 <https://bio.tools/n-bq-nn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3382,
@@ -324076,7 +337781,7 @@ This implementation supports cifar10/cifar100/imagenet.""" ;
     sc:url "http://github.com/papcjy/n-BQ-NN" .
 
 <https://bio.tools/n-dimensional-trapezoidal-integral> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3315,
         edam:topic_3382 ;
@@ -324092,7 +337797,7 @@ This implementation supports cifar10/cifar100/imagenet.""" ;
     biotools:primaryContact "Mohammed Sadeq Al-Rawi" .
 
 <https://bio.tools/n-glyco> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0102,
@@ -324114,27 +337819,8 @@ This implementation supports cifar10/cifar100/imagenet.""" ;
     sc:softwareHelp <http://hivtools.publichealth.uga.edu/N-Glyco/Help.php> ;
     sc:url "http://hivtools.publichealth.uga.edu/N-Glyco/" .
 
-<https://bio.tools/n-level_SEM> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0611,
-        edam:topic_2269 ;
-    sc:citation <https://doi.org/10.1177/0013164419840071>,
-        "pmcid:PMC6777070",
-        "pubmed:31621695" ;
-    sc:description """Using n-Level Structural Equation Models for Causal Modeling in Fully Nested, Partially Nested, and Cross-Classified Randomized Controlled Trials.
-
-Complex data structures are ubiquitous in psychological research, especially in educational settings. In the context of randomized controlled trials, students are nested in classrooms but may be cross-classified by other units, such as small groups. Furthermore, in many cases only some students may be nested within a unit while other students may not. Such instances of partial nesting requires a more flexible framework for estimating treatment effects so that the model coefficients are correctly estimated.
-
-||| HOMEPAGE BROKEN!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'SEM' (bio.tools/sem), 'xxm', 'n-level', 'cross-classified'""" ;
-    sc:featureList edam:operation_3432,
-        edam:operation_3435,
-        edam:operation_3659 ;
-    sc:name "n-level SEM" ;
-    sc:url "https://qmi-fcrr.shinyapps.io/nSEM" .
-
 <https://bio.tools/n-score> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3295,
@@ -324152,14 +337838,14 @@ Complex data structures are ubiquitous in psychological research, especially in
 
 <https://bio.tools/n50> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3494" ;
-            sc:name "DNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3494" ] ;
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:encodingFormat "http://edamontology.org/format_2545" ;
+            sc:name "DNA sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3914" ;
-            sc:name "Quality control report" ;
-            sc:sameAs "http://edamontology.org/data_3914" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3914" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Quality control report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "A script to calculate N50 from one or multiple FASTA/FASTQ files available via BioConda" ;
     sc:featureList edam:operation_2238 ;
     sc:name "n50 calculator" ;
@@ -324168,10 +337854,9 @@ Complex data structures are ubiquitous in psychological research, especially in
 
 <https://bio.tools/nabe> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3108" ;
-            sc:name "Experimental measurement" ;
-            sc:sameAs "http://edamontology.org/data_3108" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3108" ;
+            sc:name "Experimental measurement" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
@@ -324197,7 +337882,7 @@ Complex data structures are ubiquitous in psychological research, especially in
     sc:url "http://nabe.denglab.org" .
 
 <https://bio.tools/nabo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_2229,
@@ -324216,7 +337901,7 @@ Nabo is a flexible Python package that allows projections of cells from one popu
     sc:url "http://github.com/parashardhapola/nabo" .
 
 <https://bio.tools/nachrdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3068,
@@ -324236,7 +337921,7 @@ NAChRDB is particularly useful for identifying gaps in knowledge and for guiding
     sc:url "https://crocodile.ncbr.muni.cz/Apps/NAChRDB/" .
 
 <https://bio.tools/nadbinder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078 ;
     sc:citation <https://doi.org/10.1186/1471-2105-11-160> ;
@@ -324249,10 +337934,10 @@ NAChRDB is particularly useful for identifying gaps in knowledge and for guiding
         "Mac",
         "Windows" ;
     sc:softwareHelp <http://crdd.osdd.net/raghava/nadbinder/help.html> ;
-    sc:url "http://www.imtech.res.in/raghava/nadbinder/" .
+    sc:url "http://webs.iiitd.edu.in/raghava/nadbinder/" .
 
 <https://bio.tools/nadfinder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_3168 ;
@@ -324271,16 +337956,36 @@ NAChRDB is particularly useful for identifying gaps in knowledge and for guiding
     biotools:primaryContact "Jianhong Ou",
         "Lihua Julie Zhu" .
 
+<https://bio.tools/nae> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0602,
+        edam:topic_0659,
+        edam:topic_3315 ;
+    sc:citation <https://doi.org/10.1109/JBHI.2022.3199243>,
+        "pubmed:35976846" ;
+    sc:description "Evaluating gene regulatory network activity from dynamic expression data by regularized constraint programming." ;
+    sc:featureList edam:operation_1781,
+        edam:operation_2437,
+        edam:operation_2476 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "NAE" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/zpliulab/NAE" .
+
 <https://bio.tools/naflex> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2086" ;
-            sc:name "Nucleic acid structure data" ;
-            sc:sameAs "http://edamontology.org/data_2086" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2086" ;
+            sc:name "Nucleic acid structure data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0097 ;
     sc:author <http://orcid.org/0000-0002-8291-8071> ;
@@ -324302,7 +338007,7 @@ NAChRDB is particularly useful for identifying gaps in knowledge and for guiding
     biotools:primaryContact <http://orcid.org/0000-0002-8291-8071> .
 
 <https://bio.tools/naguider> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -324327,7 +338032,7 @@ NAguideR is a web-based tool, which integrates 23 common missing value imputatio
     sc:url "http://www.omicsolution.org/wukong/NAguideR/" .
 
 <https://bio.tools/nail> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2259 ;
@@ -324343,7 +338048,7 @@ NAguideR is a web-based tool, which integrates 23 common missing value imputatio
     biotools:primaryContact "Daniel G. Hurley" .
 
 <https://bio.tools/nam> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3056,
@@ -324360,7 +338065,7 @@ NAguideR is a web-based tool, which integrates 23 common missing value imputatio
     biotools:primaryContact "Alencar Xavier" .
 
 <https://bio.tools/nanite> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0632,
         edam:topic_3382,
@@ -324378,7 +338083,7 @@ NAguideR is a web-based tool, which integrates 23 common missing value imputatio
     sc:url "https://github.com/AFM-Analysis/nanite" .
 
 <https://bio.tools/nannochloropsis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0622 ;
     sc:citation <https://doi.org/10.1093/mp/sst120>,
@@ -324395,7 +338100,7 @@ NAguideR is a web-based tool, which integrates 23 common missing value imputatio
     biotools:primaryContact "Andrea Telatin" .
 
 <https://bio.tools/nano-id> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_3047,
@@ -324414,27 +338119,120 @@ Bespoke script collection for nanopore sequencing-based Isoform Dynamics (nano-I
     sc:name "nano-ID" ;
     sc:url "https://github.com/birdumbrella/nano-ID" .
 
+<https://bio.tools/nano2ngs-muta> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0199,
+        edam:topic_0749,
+        edam:topic_3168,
+        edam:topic_3174,
+        edam:topic_3519 ;
+    sc:citation <https://doi.org/10.1093/NARGAB/LQAC033>,
+        "pmcid:PMC9022462",
+        "pubmed:35464239" ;
+    sc:description "A framework for converting nanopore sequencing data to NGS-liked sequencing data for hotspot mutation detection." ;
+    sc:featureList edam:operation_0310,
+        edam:operation_3195,
+        edam:operation_3227,
+        edam:operation_3228 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "Nano2NGS-Muta" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/langjidong/Nano2NGS" .
+
+<https://bio.tools/nanobase> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0099,
+        edam:topic_0654,
+        edam:topic_3068,
+        edam:topic_3168,
+        edam:topic_3382 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAB1000>,
+        "pmcid:PMC8728195",
+        "pubmed:34747480" ;
+    sc:description "A repository for DNA and RNA nanostructures." ;
+    sc:featureList edam:operation_0244,
+        edam:operation_2421,
+        edam:operation_3216,
+        edam:operation_3431 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "Nanobase" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://nanobase.org/" .
+
+<https://bio.tools/nanobodies> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:name "Sequence" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_3671" ;
+            sc:name "Text" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_2640,
+        edam:topic_2830,
+        edam:topic_3168,
+        edam:topic_3374,
+        edam:topic_3948 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAB1021>,
+        "pmcid:PMC8728276",
+        "pubmed:34747487" ;
+    sc:description "INDI-integrated nanobody database for immunoinformatics." ;
+    sc:featureList edam:operation_2422,
+        edam:operation_3216,
+        edam:operation_3431 ;
+    sc:isAccessibleForFree true ;
+    sc:name "nanobodies" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <http://research.naturalantibody.com/nbdocumentation> ;
+    sc:url "http://naturalantibody.com/nanobodies" .
+
 <https://bio.tools/nanoclust> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1234" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Sequence set (nucleic acid)" ] ;
+    bsc:output [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_3028" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Taxonomy" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1246" ;
+            sc:name "Sequence cluster (nucleic acid)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
-    sc:applicationSubCategory edam:topic_0659,
+    sc:applicationSubCategory edam:topic_0637,
         edam:topic_0769,
-        edam:topic_3168 ;
+        edam:topic_3168,
+        edam:topic_3174 ;
+    sc:author <https://orcid.org/0000-0003-1777-9084> ;
     sc:citation <https://doi.org/10.1101/2020.05.14.087353> ;
-    sc:description """A species-level analysis of 16S rRNA nanopore sequencing data.
-
-De novo clustering and consensus building for ONT 16S sequencing data.
-
-iii. Clone the NanoCLUST repository and test the pipeline on a minimal dataset with a single command and docker/conda profiles.""" ;
+    sc:contributor <https://orcid.org/0000-0001-5352-069X>,
+        "Laura Ciuffreda" ;
+    sc:description "A species-level analysis of 16S rRNA nanopore sequencing data based on de novo clustering and consensus building." ;
     sc:featureList edam:operation_3432,
         edam:operation_3460,
         edam:operation_3644 ;
+    sc:isAccessibleForFree true ;
     sc:license "MIT" ;
     sc:name "NanoCLUST" ;
-    sc:url "https://github.com/genomicsITER/NanoCLUST" .
+    sc:softwareHelp <https://github.com/genomicsITER/NanoCLUST/tree/master/docs> ;
+    sc:url "https://github.com/genomicsITER/NanoCLUST" ;
+    biotools:primaryContact <https://orcid.org/0000-0003-1777-9084> .
 
 <https://bio.tools/nanodisco> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3174,
@@ -324456,7 +338254,7 @@ iii. Clone the NanoCLUST repository and test the pipeline on a minimal dataset w
     biotools:primaryContact <https://orcid.org/0000-0002-2462-9124> .
 
 <https://bio.tools/nanodoc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0601,
@@ -324475,14 +338273,39 @@ This software requires In vitro unmodified RNA raw read and Native RNA raw read
     sc:name "nanoDoc" ;
     sc:url "https://github.com/uedaLabR/nanoDoc" .
 
+<https://bio.tools/nanoforms> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0091,
+        edam:topic_0196,
+        edam:topic_0621,
+        edam:topic_3168,
+        edam:topic_3174 ;
+    sc:citation <https://doi.org/10.7717/PEERJ.13056>,
+        "pmcid:PMC8973472",
+        "pubmed:35368340" ;
+    sc:description "An integrated server for processing, analysis and assembly of raw sequencing data of microbial genomes, from Oxford Nanopore technology." ;
+    sc:featureList edam:operation_0310,
+        edam:operation_3185,
+        edam:operation_3192,
+        edam:operation_3196,
+        edam:operation_3933 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "NanoForms" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://nanoforms.tech" .
+
 <https://bio.tools/nanogalaxy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "A collection of best practice and popular ONT-oriented tools are integrated (and are expanding) in this custom Galaxy instance." ;
     sc:name "NanoGalaxy" ;
     sc:url "https://nanopore.usegalaxy.eu/" .
 
 <https://bio.tools/nanoj> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0804,
         edam:topic_3382,
@@ -324506,14 +338329,14 @@ Super-Resolution Radial Fluctuations (SRRF) - ImageJ Plugin.""" ;
 
 <https://bio.tools/nanoj-squirrel> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ] ;
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Image" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_3385,
         edam:topic_3572 ;
@@ -324529,7 +338352,7 @@ Super-Resolution Radial Fluctuations (SRRF) - ImageJ Plugin.""" ;
     biotools:primaryContact "Sian Culley" .
 
 <https://bio.tools/nanomark> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0654,
@@ -324543,8 +338366,30 @@ Super-Resolution Radial Fluctuations (SRRF) - ImageJ Plugin.""" ;
     sc:url "https://github.com/kkrizanovic/NanoMark" ;
     biotools:primaryContact "Ivan Sović" .
 
+<https://bio.tools/nanomaterial_modeler> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0176,
+        edam:topic_2275,
+        edam:topic_3368,
+        edam:topic_3520 ;
+    sc:citation <https://doi.org/10.1021/ACS.JCTC.1C00996>,
+        "pmcid:PMC8752518",
+        "pubmed:34871001" ;
+    sc:description "CHARMM-GUI Nanomaterial Modeler for Modeling and Simulation of Nanomaterial Systems." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_0480,
+        edam:operation_2476 ;
+    sc:isAccessibleForFree true ;
+    sc:name "Nanomaterial Modeler" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://www.charmm-gui.org/demo/nanomaterial" .
+
 <https://bio.tools/nanomethviz> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0654,
@@ -324566,8 +338411,25 @@ NanoMethViz is a toolkit for visualising methylation data from Oxford Nanopore s
     sc:name "NanoMethViz" ;
     sc:url "https://bioconductor.org/packages/NanoMethViz" .
 
+<https://bio.tools/nanomixhamster> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_2229,
+        edam:topic_2258,
+        edam:topic_2840,
+        edam:topic_3500 ;
+    sc:citation <https://doi.org/10.1080/17435390.2022.2080609>,
+        "pubmed:35713578" ;
+    sc:description "A web-based tool for predicting cytotoxicity of TiO2-based multicomponent nanomaterials toward Chinese hamster ovary (CHO-K1) cells." ;
+    sc:isAccessibleForFree true ;
+    sc:name "NanoMixHamster" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://nanomixhamster.cloud.nanosolveit.eu/" .
+
 <https://bio.tools/nanomlst> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0769,
@@ -324585,8 +338447,31 @@ Accurate multilocus sequence typing using Oxford Nanopore MinION with dual-barco
     sc:name "nanoMLST" ;
     sc:url "https://github.com/jade-nhri/nanoMLST" .
 
+<https://bio.tools/nanonet> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0736,
+        edam:topic_2830,
+        edam:topic_3168,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.3389/FIMMU.2022.958584>,
+        "pmcid:PMC9411858",
+        "pubmed:36032123" ;
+    sc:description "Rapid and accurate end-to-end nanobody modeling by deep learning." ;
+    sc:featureList edam:operation_0416,
+        edam:operation_0479,
+        edam:operation_0480,
+        edam:operation_0481 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Other" ;
+    sc:name "NanoNet" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/dina-lab3D/NanoNet" .
+
 <https://bio.tools/nanook> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0080,
@@ -324605,7 +338490,7 @@ Accurate multilocus sequence typing using Oxford Nanopore MinION with dual-barco
     biotools:primaryContact <http://orcid.org/0000-0003-3044-4297> .
 
 <https://bio.tools/nanopack> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0092,
@@ -324624,7 +338509,7 @@ Accurate multilocus sequence typing using Oxford Nanopore MinION with dual-barco
     biotools:primaryContact "Wouter De Coster" .
 
 <https://bio.tools/nanopanel2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0199,
@@ -324649,7 +338534,7 @@ Accurate multilocus sequence typing using Oxford Nanopore MinION with dual-barco
     sc:url "https://github.com/popitsch/nanopanel2" .
 
 <https://bio.tools/nanoparticle-monolayers> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0611,
         edam:topic_0769,
         edam:topic_3384,
@@ -324666,7 +338551,7 @@ A persistent challenge in materials science is the characterization of a large e
     sc:url "https://github.com/hugadams/imgproc_supplemental" .
 
 <https://bio.tools/nanoparticle-pbpk-model> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_3374,
@@ -324686,7 +338571,7 @@ A persistent challenge in materials science is the characterization of a large e
     biotools:primaryContact "Baojian Wu" .
 
 <https://bio.tools/nanopass> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2229 ;
     sc:citation <https://doi.org/10.1186/S12989-020-00368-W>,
@@ -324700,10 +338585,10 @@ The Nano Particle Administration Sedimentation Simulator (NanoPASS) is a package
 
 <https://bio.tools/nanoplot> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3494" ;
-            sc:name "DNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3494" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:encodingFormat "http://edamontology.org/format_1207" ;
+            sc:name "DNA sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622 ;
     sc:author <https://orcid.org/0000-0002-5248-8197> ;
@@ -324724,18 +338609,17 @@ The Nano Particle Administration Sedimentation Simulator (NanoPASS) is a package
 
 <https://bio.tools/nanopolish> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ],
+            sc:additionalType "http://edamontology.org/data_2093" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Data reference" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2093" ;
-            sc:name "Data reference" ;
-            sc:sameAs "http://edamontology.org/data_2093" ] ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:encodingFormat "http://edamontology.org/format_2200" ;
+            sc:name "Sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0867" ;
-            sc:name "Sequence alignment report" ;
-            sc:sameAs "http://edamontology.org/data_0867" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0867" ;
+            sc:name "Sequence alignment report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0199,
@@ -324756,7 +338640,7 @@ The Nano Particle Administration Sedimentation Simulator (NanoPASS) is a package
     biotools:primaryContact "Jared Simpson" .
 
 <https://bio.tools/nanopore> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0632,
@@ -324775,19 +338659,8 @@ In many of the scripts, you need to set the path for the corresponding data dire
     sc:name "nanopore" ;
     sc:url "https://github.com/shubhamchandak94/nanopore_dna_storage" .
 
-<https://bio.tools/nanoporous_GaN_photoelectrode_patterned_sapphire> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0611,
-        edam:topic_2828 ;
-    sc:citation <https://doi.org/10.1016/J.DIB.2019.104433>,
-        "pmcid:PMC6737298",
-        "pubmed:31516954" ;
-    sc:description "> VERY_LOW CONFIDENCE! | > HOMEPAGE MISSING! | > CORRECT NAME OF TOOL COULD ALSO BE 'nanoporous GaN photoelectrode', 'nanoporous GaN photoelectrode patterned', 'GaN photoelectrode patterned sapphire', 'GaN photoelectrode' | Experimental dataset of nanoporous GaN photoelectrode supported on patterned sapphire substrates for photoelectrochemical water splitting | GaN is one of the most promising materials for high PEC efficiency to produce clean, renewable hydrogen in an ecofriendly manner (Ebaid et al., 2015; Kamimura et al., 2017; Yang et al., 2018; Ohkawa et al., 2013). Trough assays of nanoporous gallium nitride (GaN) photoelectrode, we recently demonstrated an improved PEC efficiency and photocurrent density of nanoporous GaN photoelectrode by 470% times with respect to planar counterpart (Li et al., 2019)" ;
-    sc:featureList edam:operation_3359 ;
-    sc:name "nanoporous GaN photoelectrode patterned sapphire" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31516954" .
-
 <https://bio.tools/nanoreviser> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3474,
@@ -324802,8 +338675,40 @@ Nanopore sequencing is regarded as one of the most promising third-generation se
     sc:name "NanoReviser" ;
     sc:url "https://github.com/pkubioinformatics/NanoReviser" .
 
+<https://bio.tools/nanortax> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1234" ;
+            sc:name "Sequence set (nucleic acid)" ] ;
+    bsc:output [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_3028" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Taxonomy" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0769,
+        edam:topic_3174 ;
+    sc:author <https://orcid.org/0000-0003-1777-9084>,
+        "Laura Ciuffreda" ;
+    sc:contributor <https://orcid.org/0000-0001-5352-069X>,
+        "Laura Ciuffreda" ;
+    sc:description """NanoRTax is a taxonomic and diversity analysis pipeline built originally for Nanopore 16S rRNA data with real-time analysis support in mind. It combines state-of-the-art classifiers such as Kraken2, Centrifuge and BLAST with downstream analysis steps to provide a framework for the analysis of in-progress sequencing runs. NanoRTax retrieves the final output files in the same structure/format for every classifier which enables more comprehensive tool/database comparison and better benchmarking capabilities. Additionally, NanoRTax includes a web application (./viz_webapp/) for visualizing complete or partial pipeline outputs.
+
+The NanoRTax pipeline is built using Nextflow, a workflow tool to run tasks across multiple compute infrastructures in a very portable manner. It comes with conda environments and docker containers making installation trivial and results highly reproducible.""" ;
+    sc:featureList edam:operation_2478,
+        edam:operation_3460,
+        edam:operation_3731,
+        edam:operation_3744 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "NanoRtax" ;
+    sc:operatingSystem "Linux" ;
+    sc:softwareHelp <https://github.com/genomicsITER/NanoRTax/tree/master/docs> ;
+    sc:url "https://github.com/genomicsITER/NanoRtax" ;
+    biotools:primaryContact <https://orcid.org/0000-0003-1777-9084> .
+
 <https://bio.tools/nanoscape> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0593,
         edam:topic_0611,
         edam:topic_2229,
@@ -324825,7 +338730,7 @@ Nanopore sequencing is regarded as one of the most promising third-generation se
     sc:url "https://store.steampowered.com/app/1654050/Nanoscape" .
 
 <https://bio.tools/nanosim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3168,
@@ -324842,7 +338747,7 @@ Nanopore sequencing is regarded as one of the most promising third-generation se
     biotools:primaryContact "Inanç Birol" .
 
 <https://bio.tools/nanospc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_3174,
@@ -324864,8 +338769,28 @@ NanoSPC is a scalable, portable and cloud compatible pipeline for analyzing Nano
     sc:name "NanoSPC" ;
     sc:url "https://nanospc.mmmoxford.uk" .
 
+<https://bio.tools/nanosplicer> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_3320,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.1101/2021.10.23.465402> ;
+    sc:description "Accurate identification of splice junctions using Oxford Nanopore sequencing." ;
+    sc:featureList edam:operation_0232,
+        edam:operation_0433,
+        edam:operation_3185 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "NanoSplicer" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://github.com/shimlab/NanoSplicer/blob/master/docs/NanoSplicer_Supplementary.pdf> ;
+    sc:url "https://github.com/shimlab/NanoSplicer" .
+
 <https://bio.tools/nanospring> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0780,
@@ -324882,7 +338807,7 @@ NanoSPC is a scalable, portable and cloud compatible pipeline for analyzing Nano
     sc:url "https://github.com/qm2/NanoSpring" .
 
 <https://bio.tools/nanostringdiff> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2269 ;
@@ -324900,7 +338825,7 @@ NanoSPC is a scalable, portable and cloud compatible pipeline for analyzing Nano
     biotools:primaryContact "hong wang" .
 
 <https://bio.tools/nanostringnorm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0099,
@@ -324916,7 +338841,7 @@ NanoSPC is a scalable, portable and cloud compatible pipeline for analyzing Nano
     biotools:primaryContact "Paul Boutros" .
 
 <https://bio.tools/nanostringnormcnv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3175,
@@ -324934,7 +338859,7 @@ NanoSPC is a scalable, portable and cloud compatible pipeline for analyzing Nano
     biotools:primaryContact "Paul C Boutros" .
 
 <https://bio.tools/nanostringqcpro> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -324955,7 +338880,7 @@ NanoSPC is a scalable, portable and cloud compatible pipeline for analyzing Nano
     biotools:primaryContact "Robert Ziman" .
 
 <https://bio.tools/nanotator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
@@ -324979,7 +338904,7 @@ Short-read sequencing (SRS) is the predominant technique of DNA sequencing used
     sc:url "https://github.com/VilainLab/nanotatoRexternalDB" .
 
 <https://bio.tools/nanotiler> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0099 ;
@@ -324997,7 +338922,7 @@ Short-read sequencing (SRS) is the predominant technique of DNA sequencing used
     biotools:primaryContact "Bruce A. Shapiro" .
 
 <https://bio.tools/nanotox> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0769,
@@ -325013,8 +338938,35 @@ Computational hazard assessment of MeOx nanoparticle toxicity using machine lear
     sc:name "NanoTox" ;
     sc:url "https://github.com/NanoTox" .
 
+<https://bio.tools/nanotrf> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0196,
+        edam:topic_0621,
+        edam:topic_0769,
+        edam:topic_0780,
+        edam:topic_3959 ;
+    sc:citation <https://doi.org/10.3390/PLANTS11162103>,
+        "pmcid:PMC9413040",
+        "pubmed:36015406" ;
+    sc:description "A software tool to de novo search high-copy tandem repeats in Oxford Nanopore Technologies (ONT) plant DNA sequencing data" ;
+    sc:featureList edam:operation_0523,
+        edam:operation_0525,
+        edam:operation_3192 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "NanoTRF" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/Kirovez/NanoTRF" .
+
 <https://bio.tools/nanoxtract> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0611,
         edam:topic_0621,
@@ -325035,7 +338987,7 @@ Statistically processed image end result.""" ;
     sc:url "http://enaloscloud.novamechanics.com/EnalosWebApps/NanoXtract/" .
 
 <https://bio.tools/naomi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3324,
@@ -325057,7 +339009,7 @@ Statistically processed image end result.""" ;
     sc:url "https://github.com/jeffeaton/naomi-model-paper/tree/master/naomi" .
 
 <https://bio.tools/nap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654,
@@ -325073,7 +339025,7 @@ Statistically processed image end result.""" ;
     sc:url "http://athena.bioc.uvic.ca/virology-ca-tools/nap/" .
 
 <https://bio.tools/nap-cnb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0769,
@@ -325090,8 +339042,39 @@ NeoAntigens Prediction @ CNB (NAP-CNB) is a tool for the prediction of neoantige
     sc:name "NAP-CNB" ;
     sc:url "http://biocomp.cnb.csic.es/NeoantigensApp/" .
 
+<https://bio.tools/napari-kics> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_2333" ;
+            sc:name "Image" ] ;
+    bsc:output [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Report" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3591" ;
+            sc:name "Image" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Plug-in" ;
+    sc:applicationSubCategory edam:topic_0196 ;
+    sc:author <https://orcid.org/0000-0001-8839-411X>,
+        "Alexandr Dibrov" ;
+    sc:contributor <https://orcid.org/0000-0002-8134-5929> ;
+    sc:description "A plugin to estimate chromosome sizes from karyotype images." ;
+    sc:featureList edam:operation_3180,
+        edam:operation_3443 ;
+    sc:isAccessibleForFree true ;
+    sc:license "BSD-3-Clause" ;
+    sc:name "napari-kics" ;
+    sc:operatingSystem "Linux",
+        "Mac" ;
+    sc:softwareVersion "0.0.3.rc2" ;
+    sc:url "https://github.com/mpicbg-csbd/napari-kics" ;
+    biotools:primaryContact <https://orcid.org/0000-0002-8134-5929> .
+
 <https://bio.tools/napp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0082,
@@ -325114,7 +339097,7 @@ NeoAntigens Prediction @ CNB (NAP-CNB) is a tool for the prediction of neoantige
     biotools:primaryContact "NAPP Support" .
 
 <https://bio.tools/naps> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0082,
@@ -325132,7 +339115,7 @@ NeoAntigens Prediction @ CNB (NAP-CNB) is a tool for the prediction of neoantige
     sc:url "http://proteomics.bioengr.uic.edu/NAPS" .
 
 <https://bio.tools/narrowpeaks> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -325154,7 +339137,7 @@ NeoAntigens Prediction @ CNB (NAP-CNB) is a tool for the prediction of neoantige
     biotools:primaryContact <http://orcid.org/0000-0003-1959-8199> .
 
 <https://bio.tools/nasca> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0593,
         edam:topic_2814 ;
@@ -325169,7 +339152,7 @@ NeoAntigens Prediction @ CNB (NAP-CNB) is a tool for the prediction of neoantige
     sc:url "http://www.cs.duke.edu/donaldlab/software/nasca/index.php" .
 
 <https://bio.tools/nascent> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0602,
@@ -325185,7 +339168,7 @@ NeoAntigens Prediction @ CNB (NAP-CNB) is a tool for the prediction of neoantige
     sc:url "http://nascent.pitgroup.org/" .
 
 <https://bio.tools/nasqar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_3170,
@@ -325211,7 +339194,7 @@ https://github.com/nasqar/nasqar.""" ;
     sc:url "http://nasqar.abudhabi.nyu.edu/" .
 
 <https://bio.tools/nassam> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0082,
@@ -325233,7 +339216,7 @@ https://github.com/nasqar/nasqar.""" ;
     biotools:primaryContact "NASSAM Support" .
 
 <https://bio.tools/nast> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0621,
@@ -325250,7 +339233,7 @@ https://github.com/nasqar/nasqar.""" ;
     sc:url "http://greengenes.lbl.gov/cgi-bin/nph-NAST_align.cgi" .
 
 <https://bio.tools/nast-ier> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_3168 ;
@@ -325264,14 +339247,14 @@ https://github.com/nasqar/nasqar.""" ;
 
 <https://bio.tools/nastiseq> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2535" ;
-            sc:name "Sequence tag profile" ;
-            sc:sameAs "http://edamontology.org/data_2535" ] ;
+            sc:additionalType "http://edamontology.org/data_2535" ;
+            sc:encodingFormat "http://edamontology.org/format_2548" ;
+            sc:name "Sequence tag profile" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:encodingFormat "http://edamontology.org/format_2548" ;
+            sc:name "Sequence features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3308 ;
     sc:citation <https://doi.org/10.1101/gr.149310.112> ;
@@ -325286,10 +339269,10 @@ https://github.com/nasqar/nasqar.""" ;
 
 <https://bio.tools/nastybugs> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3301 ;
     sc:citation <https://doi.org/10.12688/f1000research.12781.1> ;
@@ -325303,7 +339286,7 @@ https://github.com/nasqar/nasqar.""" ;
         "Steve Tsang" .
 
 <https://bio.tools/natalieq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0602,
@@ -325322,7 +339305,7 @@ https://github.com/nasqar/nasqar.""" ;
     biotools:primaryContact "Support" .
 
 <https://bio.tools/natdrap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0634,
@@ -325339,8 +339322,24 @@ https://github.com/nasqar/nasqar.""" ;
     sc:name "NatDRAP" ;
     sc:url "https://github.com/lixt314/NatDRAP1" .
 
+<https://bio.tools/natora> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0769,
+        edam:topic_3053,
+        edam:topic_3372 ;
+    sc:citation <https://doi.org/10.1101/2021.10.21.465343> ;
+    sc:description "A relatedness-pruning method to minimize the loss of dataset size in genetic and omics analyses" ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "NAToRA" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/ldgh/NAToRA_Public" .
+
 <https://bio.tools/naturalist> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0637,
         edam:topic_3050,
@@ -325355,7 +339354,7 @@ naturaList package for R. version 0.2.0.""" ;
     sc:url "https://github.com/avrodrigues/naturaList" .
 
 <https://bio.tools/navia> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0091,
@@ -325377,7 +339376,7 @@ naturaList package for R. version 0.2.0.""" ;
     sc:url "https://navia.ms" .
 
 <https://bio.tools/navicluster> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0128,
@@ -325395,7 +339394,7 @@ naturaList package for R. version 0.2.0.""" ;
     biotools:primaryContact "Thanet Praneenararat" .
 
 <https://bio.tools/navigator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0602,
@@ -325416,7 +339415,7 @@ naturaList package for R. version 0.2.0.""" ;
     biotools:primaryContact "Jurisica Lab" .
 
 <https://bio.tools/navip> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:author "Jan-Simon Baasner" ;
     sc:citation <https://doi.org/10.1101/596718> ;
     sc:contributor "Boas Pucker" ;
@@ -325427,7 +339426,7 @@ naturaList package for R. version 0.2.0.""" ;
         "Jan-Simon Baasner" .
 
 <https://bio.tools/navise> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3168,
         edam:topic_3173,
@@ -325447,7 +339446,7 @@ naturaList package for R. version 0.2.0.""" ;
     biotools:primaryContact "Ander Izeta" .
 
 <https://bio.tools/nbamseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -325470,8 +339469,32 @@ High-throughput sequencing experiments followed by differential expression analy
     sc:name "NBAMSeq" ;
     sc:url "http://bioconductor.org/packages/release/bioc/html/NBAMSeq.html" .
 
+<https://bio.tools/nbbt-test> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0121,
+        edam:topic_3170,
+        edam:topic_3308,
+        edam:topic_3320,
+        edam:topic_3676 ;
+    sc:citation <https://doi.org/10.1038/S41598-022-15762-X>,
+        "pmcid:PMC9329447",
+        "pubmed:35896555" ;
+    sc:description "A versatile method for differential analysis of multiple types of RNA-seq data." ;
+    sc:featureList edam:operation_0264,
+        edam:operation_3223,
+        edam:operation_3680 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "NBBt-test" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://cran.r-project.org/web/packages/NBBttest/NBBttest.pdf> ;
+    sc:url "https://CRAN.R-project.org/package=NBBttest" .
+
 <https://bio.tools/nbc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3053 ;
@@ -325484,7 +339507,7 @@ High-throughput sequencing experiments followed by differential expression analy
     sc:url "https://github.com/EESI/nbc" .
 
 <https://bio.tools/nbia> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -325504,7 +339527,7 @@ With the explosion of high-throughput data, effective integrative analyses are n
     sc:url "http://bioconductor.org/packages/release/bioc/html/BLMA.html" .
 
 <https://bio.tools/nbigv-db> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_2229,
@@ -325524,7 +339547,7 @@ Welcome to NBIGV, a database dedicated to organizing and characterizing non-B ce
     sc:url "http://nbigv.org" .
 
 <https://bio.tools/nbis-meta> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_3174 ;
     sc:description "A snakemake workflow for metagenomics" ;
@@ -325537,7 +339560,7 @@ Welcome to NBIGV, a database dedicated to organizing and characterizing non-B ce
     sc:url "https://github.com/NBISweden/nbis-meta" .
 
 <https://bio.tools/nbr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2269,
@@ -325559,7 +339582,7 @@ Network-Based R-Statistics using Mixed Effects Models.""" ;
     sc:url "https://CRAN.R-project.org/package=NBR" .
 
 <https://bio.tools/nbrp_resources> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0102,
@@ -325581,8 +339604,27 @@ Network-Based R-Statistics using Mixed Effects Models.""" ;
     sc:url "http://www.nbrp.jp/index.jsp" ;
     biotools:primaryContact "Contact form" .
 
+<https://bio.tools/nbs-predict> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_3360,
+        edam:topic_3444,
+        edam:topic_3474,
+        edam:topic_3577 ;
+    sc:citation <https://doi.org/10.1016/J.NEUROIMAGE.2021.118625>,
+        "pubmed:34610435" ;
+    sc:description "NBS-Predict aims to provide a fast way to identify neuroimaging-based biomarkers with high generalizability by combining machine learning with graph theory in a cross-validation structure." ;
+    sc:featureList edam:operation_3658 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "NBS-Predict" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/eminSerin/NBS-Predict" .
+
 <https://bio.tools/nbspred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0780,
@@ -325600,7 +339642,7 @@ Network-Based R-Statistics using Mixed Effects Models.""" ;
     biotools:primaryContact "Sandeep Kushwaha" .
 
 <https://bio.tools/nbzimm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_2269,
@@ -325619,7 +339661,7 @@ NBZIMM: Negative Binomial and Zero-Inflated Mixed Models, with Applications to M
     sc:url "http://github.com//nyiuab//NBZIMM" .
 
 <https://bio.tools/nc2eye> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_0659,
@@ -325641,7 +339683,7 @@ Eye diseases (EDs) represent the disorders affecting visual system, such as reti
     sc:url "http://nc2eye.bio-data.cn/" .
 
 <https://bio.tools/ncRNA-eQTL> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_2885,
@@ -325656,29 +339698,32 @@ Eye diseases (EDs) represent the disorders affecting visual system, such as reti
     sc:softwareHelp <http://creativecommons.org/licenses/by-nc/4.0/> ;
     sc:url "http://ibi.hzau.edu.cn/ncRNA-eQTL" .
 
-<https://bio.tools/ncRNA2MetS> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0219,
-        edam:topic_0602,
-        edam:topic_0659,
-        edam:topic_3068,
-        edam:topic_3407 ;
-    sc:citation <https://doi.org/10.7717/PEERJ.7909>,
-        "pmcid:PMC6798904",
-        "pubmed:31637139" ;
-    sc:description """a manually curated database for non-coding RNAs associated with metabolic syndrome.
-
-Metabolic syndrome is a cluster of the most dangerous heart attack risk factors (diabetes and raised fasting plasma glucose, abdominal obesity, high cholesterol and high blood pressure), and has become a major global threat to human health. A number of studies have demonstrated that hundreds of non-coding RNAs, including miRNAs and lncRNAs, are involved in metabolic syndrome-related diseases such as obesity, type 2 diabetes mellitus, hypertension, etc. However, these research results are distributed in a large number of literature, which is not conducive to analysis and use. There is an urgent need to integrate these relationship data between metabolic syndrome and non-coding RNA into a specialized database.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'biomed-bigdata'""" ;
-    sc:featureList edam:operation_2421,
-        edam:operation_3792 ;
-    sc:name "ncRNA2MetS" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31637139" .
+<https://bio.tools/ncats_inxight_drugs> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0202,
+        edam:topic_3373,
+        edam:topic_3375,
+        edam:topic_3379 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAB918>,
+        "pmcid:PMC8728186",
+        "pubmed:34648031" ;
+    sc:description "A comprehensive and curated portal for translational research." ;
+    sc:featureList edam:operation_0224,
+        edam:operation_3436,
+        edam:operation_3938 ;
+    sc:isAccessibleForFree true ;
+    sc:name "NCATS Inxight Drugs" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://drugs.ncats.io/api/v1> ;
+    sc:url "https://drugs.ncats.io" .
 
 <https://bio.tools/ncbi-taxonomist> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0637,
         edam:topic_0769,
@@ -325702,7 +339747,7 @@ Toolbox to manage NCBI taxonomical data.""" ;
     sc:url "https://cloud.sylabs.io/library/jpb/ncbi-taxonomist" .
 
 <https://bio.tools/ncbi_assembly_archive> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0196,
@@ -325723,7 +339768,7 @@ Toolbox to manage NCBI taxonomical data.""" ;
     sc:url "http://www.ncbi.nlm.nih.gov/projects/assembly/" .
 
 <https://bio.tools/ncbi_bookshelf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_3297,
         edam:topic_3303,
@@ -325744,16 +339789,28 @@ Toolbox to manage NCBI taxonomical data.""" ;
     sc:url "http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Books" ;
     biotools:primaryContact "Marilu A. Hoeppner" .
 
+<https://bio.tools/ncbi_datasets> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Bioinformatics portal",
+        "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_3071 ;
+    sc:description "NCBI Datasets is a new resource that lets you easily gather data from across NCBI databases. Find and download sequence, annotation, and metadata for genes and genomes using our command-line tools or web interface." ;
+    sc:featureList edam:operation_0338,
+        edam:operation_2409,
+        edam:operation_2422 ;
+    sc:name "NCBI Datasets" ;
+    sc:softwareVersion "13.29.1" ;
+    sc:url "https://www.ncbi.nlm.nih.gov/datasets/" .
+
 <https://bio.tools/ncbi_dbprobe> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2719" ;
-            sc:name "dbProbe ID" ;
-            sc:sameAs "http://edamontology.org/data_2719" ] ;
+            sc:additionalType "http://edamontology.org/data_2719" ;
+            sc:name "dbProbe ID" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2717" ;
-            sc:name "Oligonucleotide probe annotation" ;
-            sc:sameAs "http://edamontology.org/data_2717" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2717" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Oligonucleotide probe annotation" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0607 ;
     sc:citation <https://doi.org/10.1093/nar/gkq1172> ;
@@ -325767,7 +339824,7 @@ Toolbox to manage NCBI taxonomical data.""" ;
     sc:url "http://www.ncbi.nlm.nih.gov/probe" .
 
 <https://bio.tools/ncbi_epigenomics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0203,
@@ -325787,84 +339844,87 @@ Toolbox to manage NCBI taxonomical data.""" ;
     sc:url "http://www.ncbi.nlm.nih.gov/epigenomics" ;
     biotools:primaryContact "Gregory D. Schuler" .
 
+<https://bio.tools/ncbi_fcs> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0080,
+        edam:topic_0196 ;
+    sc:description "The NCBI Foreign Contamination Screen (FCS) is a tool suite for identifying and removing contaminant sequences in genome assemblies. Contaminants are defined as sequences in a dataset that do not originate from the biological source organism and can arise from a variety of environmental and laboratory sources. FCS will help you remove contaminants from genomes before submission to GenBank." ;
+    sc:featureList edam:operation_3180,
+        edam:operation_3187,
+        edam:operation_3192 ;
+    sc:name "NCBI fcs" ;
+    sc:softwareVersion "0.2.2" ;
+    sc:url "https://github.com/ncbi/fcs" .
+
 <https://bio.tools/ncbi_gene> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0842" ;
-            sc:name "Identifier" ;
-            sc:sameAs "http://edamontology.org/data_0842" ],
+            sc:additionalType "http://edamontology.org/data_1187" ;
+            sc:name "PubMed ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1176" ;
-            sc:name "GO concept ID" ;
-            sc:sameAs "http://edamontology.org/data_1176" ],
+            sc:additionalType "http://edamontology.org/data_1176" ;
+            sc:name "GO concept ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1045" ;
-            sc:name "Species name" ;
-            sc:sameAs "http://edamontology.org/data_1045" ],
+            sc:additionalType "http://edamontology.org/data_1097" ;
+            sc:name "Sequence accession (nucleic acid)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1097" ;
-            sc:name "Sequence accession (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1097" ],
+            sc:additionalType "http://edamontology.org/data_1026" ;
+            sc:name "Gene symbol" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0987" ;
-            sc:name "Chromosome name" ;
-            sc:sameAs "http://edamontology.org/data_0987" ],
+            sc:additionalType "http://edamontology.org/data_0842" ;
+            sc:name "Identifier" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1026" ;
-            sc:name "Gene symbol" ;
-            sc:sameAs "http://edamontology.org/data_1026" ],
+            sc:additionalType "http://edamontology.org/data_0842" ;
+            sc:name "Identifier" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0966" ;
-            sc:name "Ontology term" ;
-            sc:sameAs "http://edamontology.org/data_0966" ],
+            sc:additionalType "http://edamontology.org/data_0966" ;
+            sc:name "Ontology term" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1011" ;
-            sc:name "EC number" ;
-            sc:sameAs "http://edamontology.org/data_1011" ],
+            sc:additionalType "http://edamontology.org/data_1045" ;
+            sc:name "Species name" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1187" ;
-            sc:name "PubMed ID" ;
-            sc:sameAs "http://edamontology.org/data_1187" ],
+            sc:additionalType "http://edamontology.org/data_0987" ;
+            sc:name "Chromosome name" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0842" ;
-            sc:name "Identifier" ;
-            sc:sameAs "http://edamontology.org/data_0842" ] ;
+            sc:additionalType "http://edamontology.org/data_1011" ;
+            sc:name "EC number" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0916" ;
-            sc:name "Gene report" ;
-            sc:sameAs "http://edamontology.org/data_0916" ],
+            sc:additionalType "http://edamontology.org/data_0916" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Gene report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0916" ;
-            sc:name "Gene report" ;
-            sc:sameAs "http://edamontology.org/data_0916" ],
+            sc:additionalType "http://edamontology.org/data_0916" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Gene report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0916" ;
-            sc:name "Gene report" ;
-            sc:sameAs "http://edamontology.org/data_0916" ],
+            sc:additionalType "http://edamontology.org/data_0916" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Gene report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0916" ;
-            sc:name "Gene report" ;
-            sc:sameAs "http://edamontology.org/data_0916" ],
+            sc:additionalType "http://edamontology.org/data_0916" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Gene report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0916" ;
-            sc:name "Gene report" ;
-            sc:sameAs "http://edamontology.org/data_0916" ],
+            sc:additionalType "http://edamontology.org/data_0916" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Gene report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0916" ;
-            sc:name "Gene report" ;
-            sc:sameAs "http://edamontology.org/data_0916" ],
+            sc:additionalType "http://edamontology.org/data_0916" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Gene report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0916" ;
-            sc:name "Gene report" ;
-            sc:sameAs "http://edamontology.org/data_0916" ],
+            sc:additionalType "http://edamontology.org/data_0916" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Gene report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0916" ;
-            sc:name "Gene report" ;
-            sc:sameAs "http://edamontology.org/data_0916" ],
+            sc:additionalType "http://edamontology.org/data_0916" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Gene report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0916" ;
-            sc:name "Gene report" ;
-            sc:sameAs "http://edamontology.org/data_0916" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0916" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Gene report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0623 ;
@@ -325879,7 +339939,7 @@ Toolbox to manage NCBI taxonomical data.""" ;
     sc:url "http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene" .
 
 <https://bio.tools/ncbi_genome_workbench> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3168 ;
@@ -325896,7 +339956,7 @@ Toolbox to manage NCBI taxonomical data.""" ;
     biotools:primaryContact "Support" .
 
 <https://bio.tools/ncbi_genotyping> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0625,
@@ -325919,7 +339979,7 @@ Toolbox to manage NCBI taxonomical data.""" ;
     sc:url "https://www.ncbi.nlm.nih.gov/projects/genotyping/formpage.cgi" .
 
 <https://bio.tools/ncbi_geo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0632,
@@ -325943,7 +340003,7 @@ Toolbox to manage NCBI taxonomical data.""" ;
     biotools:primaryContact "Tanya Barrett" .
 
 <https://bio.tools/ncbi_influenza_virus_sequence_annotation_tool> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -325966,10 +340026,10 @@ Toolbox to manage NCBI taxonomical data.""" ;
 
 <https://bio.tools/ncbi_mass_downloader> a sc:SoftwareApplication ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0850" ;
-            sc:name "Sequence set" ;
-            sc:sameAs "http://edamontology.org/data_0850" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0850" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Sequence set" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_3307 ;
@@ -325988,7 +340048,7 @@ Toolbox to manage NCBI taxonomical data.""" ;
     biotools:primaryContact "Francisco Pina Martins" .
 
 <https://bio.tools/ncbi_resources> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
@@ -325996,9 +340056,42 @@ Toolbox to manage NCBI taxonomical data.""" ;
         edam:topic_3366,
         edam:topic_3473,
         edam:topic_3489 ;
-    sc:citation "pubmed:19910364",
+    sc:citation <https://doi.org/10.1093/nar/gkaa892>,
+        <https://doi.org/10.1093/nar/gkab1112>,
+        <https://doi.org/10.1093/nar/gki062>,
+        <https://doi.org/10.1093/nar/gkl1031>,
+        <https://doi.org/10.1093/nar/gkm1000>,
+        <https://doi.org/10.1093/nar/gkp967>,
+        <https://doi.org/10.1093/nar/gkq1172>,
+        <https://doi.org/10.1093/nar/gkr1184>,
+        <https://doi.org/10.1093/nar/gku1130>,
+        <https://doi.org/10.1093/nar/gkv1290>,
+        <https://doi.org/10.1093/nar/gkw1071>,
+        <https://doi.org/10.1093/nar/gkx1095>,
+        <https://doi.org/10.1093/nar/gky1069>,
+        <https://doi.org/10.1093/nar/gkz899>,
+        "pmcid:PMC2808881",
+        "pmcid:PMC3013733",
+        "pmcid:PMC3245031",
+        "pmcid:PMC4383943",
+        "pmcid:PMC4702911",
+        "pmcid:PMC5753372",
+        "pmcid:PMC7778943",
+        "pmcid:PMC8728269",
+        "pubmed:15608222",
+        "pubmed:17170002",
+        "pubmed:18045790",
+        "pubmed:19910364",
         "pubmed:21097890",
-        "pubmed:22140104" ;
+        "pubmed:22140104",
+        "pubmed:25398906",
+        "pubmed:26615191",
+        "pubmed:27899561",
+        "pubmed:29140470",
+        "pubmed:30395293",
+        "pubmed:31602479",
+        "pubmed:33095870",
+        "pubmed:34850941" ;
     sc:description "The National Center for Biotechnology Information (NCBI) provides analysis and retrieval resources for the data in GenBank and other biological data made available through the NCBI web site." ;
     sc:featureList edam:operation_0224,
         edam:operation_0308,
@@ -326015,14 +340108,13 @@ Toolbox to manage NCBI taxonomical data.""" ;
 
 <https://bio.tools/ncbi_taxonomy_database> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1179" ;
-            sc:name "NCBI taxonomy ID" ;
-            sc:sameAs "http://edamontology.org/data_1179" ] ;
+            sc:additionalType "http://edamontology.org/data_1179" ;
+            sc:name "NCBI taxonomy ID" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3028" ;
-            sc:name "Taxonomy" ;
-            sc:sameAs "http://edamontology.org/data_3028" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3028" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Taxonomy" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0621,
@@ -326047,7 +340139,7 @@ Toolbox to manage NCBI taxonomical data.""" ;
     sc:url "http://www.ncbi.nlm.nih.gov/Taxonomy" .
 
 <https://bio.tools/ncbrpred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0082,
@@ -326070,7 +340162,7 @@ NCBRPred is a new sequence-based computational predictor for identifying DNA-bin
     sc:url "http://bliulab.net/NCBRPred" .
 
 <https://bio.tools/nccmp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "nccmp compares two NetCDF files bitwise, semantically or with a user defined tolerance (absolute or relative percentage).  Parallel comparisons are done in local memory without requiring temporary files.  Highly recommended for regression testing scientific models or datasets in a test-driven development environment." ;
     sc:isAccessibleForFree true ;
     sc:license "GPL-2.0" ;
@@ -326081,7 +340173,7 @@ NCBRPred is a new sequence-based computational predictor for identifying DNA-bin
     biotools:primaryContact "Remik Ziemlinski" .
 
 <https://bio.tools/ncdfflow> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2229,
@@ -326101,7 +340193,7 @@ NCBRPred is a new sequence-based computational predictor for identifying DNA-bin
     biotools:primaryContact "Mike Jiang" .
 
 <https://bio.tools/ncdlres> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0203,
@@ -326124,7 +340216,7 @@ NCBRPred is a new sequence-based computational predictor for identifying DNA-bin
     sc:url "https://github.com/linyuwangPHD/ncDLRES" .
 
 <https://bio.tools/ncdrmarker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0154,
@@ -326144,7 +340236,7 @@ ncDRMarker is an integrated bioinformatic platform that enable users to prioriti
     sc:url "http://bio-bigdata.hrbmu.edu.cn/ncDRMarker/index" .
 
 <https://bio.tools/ncep> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0154,
@@ -326162,7 +340254,7 @@ More and more evidences have shown that non-coding RNAs (ncRNAs), such as lncRNA
     sc:url "http://www.jianglab.cn/ncEP/" .
 
 <https://bio.tools/ncfans-v2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0659,
@@ -326183,7 +340275,7 @@ More and more evidences have shown that non-coding RNAs (ncRNAs), such as lncRNA
         "Qi Liao" .
 
 <https://bio.tools/ncgtw> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -326203,7 +340295,7 @@ The purpose of ncGTW is to detect and fix the bad alignments in the LC-MS data.
     sc:url "https://github.com/ChiungTingWu/ncGTW" .
 
 <https://bio.tools/nci_flicker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0602,
@@ -326223,7 +340315,7 @@ The purpose of ncGTW is to detect and fix the bad alignments in the LC-MS data.
     sc:url "http://www.lecb.ncifcrf.gov/flicker/" .
 
 <https://bio.tools/ncigraph> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0602,
@@ -326242,7 +340334,7 @@ The purpose of ncGTW is to detect and fix the bad alignments in the LC-MS data.
     biotools:primaryContact "Laurent Jacob" .
 
 <https://bio.tools/ncis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2640 ;
@@ -326256,7 +340348,7 @@ The purpose of ncGTW is to detect and fix the bad alignments in the LC-MS data.
     sc:url "http://bioen-compbio.bioen.illinois.edu/NCIS/" .
 
 <https://bio.tools/ncmhap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0196,
@@ -326275,7 +340367,7 @@ This code is related to our recently proposed method called NCMHap. This method
     sc:url "https://github.com/Fatemeh-Zamani/NCMHap" .
 
 <https://bio.tools/nco> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:description "The NCO toolkit manipulates and analyzes data stored in netCDF-accessible formats, including DAP, HDF4, and HDF5." ;
     sc:license "BSD-3-Clause" ;
@@ -326285,7 +340377,7 @@ This code is related to our recently proposed method called NCMHap. This method
     sc:url "http://nco.sourceforge.net/" .
 
 <https://bio.tools/ncodr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0081,
@@ -326308,14 +340400,14 @@ NCodR : A multi-class SVM classifier using single sequence repeat signatures to
 
 <https://bio.tools/ncoils> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2974" ;
-            sc:name "Protein sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_2974" ] ;
+            sc:additionalType "http://edamontology.org/data_2974" ;
+            sc:encodingFormat "http://edamontology.org/format_2200" ;
+            sc:name "Protein sequence (raw)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Protein features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3542 ;
     sc:citation <https://doi.org/10.1126/science.252.5009.1162>,
@@ -326332,7 +340424,7 @@ NCodR : A multi-class SVM classifier using single sequence repeat signatures to
     sc:url "http://www.predictprotein.org" .
 
 <https://bio.tools/ncov> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3168,
@@ -326351,7 +340443,7 @@ Information on COVID-19, the infectious disease caused by the most recently disc
     sc:url "https://www.who.int/emergencies/diseases/novel-coronavirus-2019" .
 
 <https://bio.tools/ncov2019> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3077,
         edam:topic_3305,
@@ -326373,14 +340465,14 @@ Information on COVID-19, the infectious disease caused by the most recently disc
 
 <https://bio.tools/ncpred> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_2200" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1772" ;
-            sc:name "Score" ;
-            sc:sameAs "http://edamontology.org/data_1772" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1772" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Score" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3070 ;
     sc:citation <https://doi.org/10.1093/nar/gku325> ;
@@ -326395,7 +340487,7 @@ Information on COVID-19, the infectious disease caused by the most recently disc
     sc:url "http://ncrna-pred.com/HLRF.htm" .
 
 <https://bio.tools/ncpro-ml> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0659,
@@ -326413,7 +340505,7 @@ The promoter is located near the transcription start sites and regulates transcr
     sc:url "http://www.bio-bigdata.cn/ncPro-ML/" .
 
 <https://bio.tools/ncrdeep> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_3474,
@@ -326429,7 +340521,7 @@ ncRDeep: Non coding RNA classification with convolutional neural network.""" ;
     sc:url "http://home.jbnu.ac.kr/NSCL/ncRDeep.htm" .
 
 <https://bio.tools/ncrdense> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0203,
@@ -326447,7 +340539,7 @@ ncRDeep: Non coding RNA classification with convolutional neural network.""" ;
     sc:url "http://nsclbio.jbnu.ac.kr/tools/ncRDense/" .
 
 <https://bio.tools/ncresnet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0659,
@@ -326469,7 +340561,7 @@ A deep learning-based method to predict noncoding RNAs of RNA sequences.""" ;
     sc:url "https://github.com/abcair/NCResNet" .
 
 <https://bio.tools/ncrfp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0154,
@@ -326488,7 +340580,7 @@ ncRNAs family classification.""" ;
     sc:url "https://github.com/linyuwangPHD/ncRFP" .
 
 <https://bio.tools/ncri> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0219,
@@ -326508,7 +340600,7 @@ Non-coding RNAs in Inflammation (ncRI) provides a manually curated database for
     sc:url "http://www.jianglab.cn/ncRI/" .
 
 <https://bio.tools/ncrna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0203,
@@ -326531,7 +340623,7 @@ Non-coding RNAs in Inflammation (ncRI) provides a manually curated database for
     biotools:primaryContact "Non-Coding RNA database team" .
 
 <https://bio.tools/ncrnavar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
@@ -326553,7 +340645,7 @@ Sep 10, 2019: The variant mapping was developed...""" ;
     sc:url "http://www.liwzlab.cn/ncrnavar/" .
 
 <https://bio.tools/ncrnawsdl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1093/nar/gkr1175> ;
@@ -326569,7 +340661,7 @@ Sep 10, 2019: The variant mapping was developed...""" ;
     biotools:primaryContact "Runsheng Chen" .
 
 <https://bio.tools/ncrpheno> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0625,
@@ -326594,7 +340686,7 @@ ncRPheno is a comprehensive database that provides experimentally supported asso
     sc:url "http://lilab2.sysu.edu.cn/ncrpheno" .
 
 <https://bio.tools/ncv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3053,
@@ -326612,7 +340704,7 @@ ncRPheno is a comprehensive database that provides experimentally supported asso
     sc:url "https://github.com/gangwug/nCV" .
 
 <https://bio.tools/ncview> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:description "Ncview is a netCDF visual browser." ;
     sc:featureList edam:operation_0337 ;
@@ -326624,8 +340716,34 @@ ncRPheno is a comprehensive database that provides experimentally supported asso
     sc:url "https://cirrus.ucsd.edu/ncview/" ;
     biotools:primaryContact "Robert W. McMullen" .
 
+<https://bio.tools/ncypred> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_3495" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "RNA sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0621,
+        edam:topic_0659,
+        edam:topic_3170,
+        edam:topic_3360 ;
+    sc:citation <https://doi.org/10.1109/TCBB.2021.3131136>,
+        "pubmed:34826297" ;
+    sc:description "A Bidirectional LSTM Network with Attention for Y RNA and short non-coding RNA classification." ;
+    sc:featureList edam:operation_0335,
+        edam:operation_3663 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "NCYPred" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://www.gpea.uem.br/ncypred/" .
+
 <https://bio.tools/ndb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0082,
@@ -326648,7 +340766,7 @@ ncRPheno is a comprehensive database that provides experimentally supported asso
     biotools:primaryContact "NDB Admin" .
 
 <https://bio.tools/ndb_tools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0082,
@@ -326672,7 +340790,7 @@ ncRPheno is a comprehensive database that provides experimentally supported asso
     biotools:primaryContact "NDB Admin" .
 
 <https://bio.tools/ndex> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0769,
@@ -326692,8 +340810,30 @@ ncRPheno is a comprehensive database that provides experimentally supported asso
         "Windows" ;
     sc:url "https://www.ndexbio.org" .
 
+<https://bio.tools/ndexedit> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:name "Pathway or network" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_0602,
+        edam:topic_3382 ;
+    sc:citation <https://doi.org/10.1101/2021.11.04.467315> ;
+    sc:description "Data-dependent visualization of biological networks in the web-browser with NDExEdit." ;
+    sc:featureList edam:operation_2429,
+        edam:operation_3096,
+        edam:operation_3925 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "NDExEdit" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://frankkramer-lab.github.io/NDExEdit" .
+
 <https://bio.tools/ndexr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0219,
         edam:topic_0602,
@@ -326714,7 +340854,7 @@ ncRPheno is a comprehensive database that provides experimentally supported asso
         "Frank Kramer" .
 
 <https://bio.tools/ndi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0632,
         edam:topic_3300,
@@ -326734,7 +340874,7 @@ It is assumed that the function ndi_Init.m is run at startup. Please add this to
     sc:url "http://github.com/VH-Lab/NDI-matlab" .
 
 <https://bio.tools/ndrindex> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_2229,
@@ -326755,14 +340895,14 @@ A R package for selecting the best way for RNA-Seq data pretreatment.""" ;
 
 <https://bio.tools/ndtree> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_2546" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2955" ;
-            sc:name "Sequence report" ;
-            sc:sameAs "http://edamontology.org/data_2955" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2955" ;
+            sc:encodingFormat "http://edamontology.org/format_2333" ;
+            sc:name "Sequence report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3293 ;
     sc:citation <https://doi.org/10.1371/journal.pone.0087991>,
@@ -326783,31 +340923,30 @@ A R package for selecting the best way for RNA-Seq data pretreatment.""" ;
     sc:url "http://cge.cbs.dtu.dk/services/NDtree/" ;
     biotools:primaryContact "Ole Lund" .
 
-<https://bio.tools/neXtProt_knowledgebase_2020> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0080,
-        edam:topic_0121,
-        edam:topic_0154,
-        edam:topic_0601,
-        edam:topic_3520 ;
-    sc:citation <https://doi.org/10.1093/NAR/GKZ995>,
-        "pubmed:31724716" ;
-    sc:description """data, tools and usability improvements.
-
-{{Search.result.error}} {{message}}.
-
-The neXtProt knowledgebase in 2020: data, tools and usability improvements. Nucleic Acids Research, Database Issue (2020).
-
-||| COMMON LINK WITH (PUB. & NAME DIFFERENT) bio.tools/nextprot (NEXTPROT.ORG).
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'neXtProt' (bio.tools/nextprot), 'neXtProt knowledgebase', 'SPARQL'""" ;
-    sc:featureList edam:operation_0224,
-        edam:operation_3643,
-        edam:operation_3755 ;
-    sc:name "neXtProt knowledgebase 2020" ;
-    sc:url "https://www.nextprot.org" .
+<https://bio.tools/near> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0769,
+        edam:topic_3304,
+        edam:topic_3384,
+        edam:topic_3418 ;
+    sc:citation <https://doi.org/10.1016/J.DCN.2022.101068>,
+        "pmcid:PMC8800139",
+        "pubmed:35085870" ;
+    sc:description "Neonatal EEG Artifact Removal, an automated pipeline for pre-processing." ;
+    sc:featureList edam:operation_0321,
+        edam:operation_3237,
+        edam:operation_3891 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "NEAR" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/vpKumaravel/NEAR" .
 
 <https://bio.tools/nearbynding> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_3308,
@@ -326828,7 +340967,7 @@ nearBynding is an R package that discerns RNA structure at and proximal to the s
     sc:url "https://bioconductor.org/packages/nearBynding/" .
 
 <https://bio.tools/nearender> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -326847,7 +340986,7 @@ nearBynding is an R package that discerns RNA structure at and proximal to the s
     biotools:primaryContact "Ashwini Jeggari" .
 
 <https://bio.tools/neartree> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2828,
         edam:topic_3569 ;
@@ -326864,8 +341003,33 @@ nearBynding is an R package that discerns RNA structure at and proximal to the s
     sc:url "https://sourceforge.net/projects/neartree/" ;
     biotools:primaryContact <http://orcid.org/0000-0002-4451-1641> .
 
+<https://bio.tools/nease> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0128,
+        edam:topic_0634,
+        edam:topic_3320,
+        edam:topic_3360,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.1186/S13059-021-02538-1>,
+        "pmcid:PMC8638120",
+        "pubmed:34857024" ;
+    sc:description "Functional enrichment of alternative splicing events with NEASE reveals insights into tissue identity and diseases." ;
+    sc:featureList edam:operation_0264,
+        edam:operation_0436,
+        edam:operation_3501,
+        edam:operation_3928 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "NEASE" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://github.com/louadi/NEASE-tutorials> ;
+    sc:url "https://github.com/louadi/NEASE" .
+
 <https://bio.tools/neat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0602 ;
@@ -326886,7 +341050,7 @@ nearBynding is an R package that discerns RNA structure at and proximal to the s
     biotools:primaryContact "Sylvain Brohée" .
 
 <https://bio.tools/neat-enrich> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -326906,7 +341070,7 @@ nearBynding is an R package that discerns RNA structure at and proximal to the s
     biotools:primaryContact "Mirko Signorelli" .
 
 <https://bio.tools/neat-genreads> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_3524 ;
@@ -326921,7 +341085,7 @@ nearBynding is an R package that discerns RNA structure at and proximal to the s
     sc:url "https://github.com/zstephens/neat-genreads" .
 
 <https://bio.tools/neat-ngs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3168,
         edam:topic_3169,
@@ -326938,8 +341102,30 @@ nearBynding is an R package that discerns RNA structure at and proximal to the s
     sc:url "https://github.com/pschorderet/NEAT" ;
     biotools:primaryContact "Admin" .
 
+<https://bio.tools/neat-seq> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0108,
+        edam:topic_0203,
+        edam:topic_2885,
+        edam:topic_3173,
+        edam:topic_3940 ;
+    sc:citation <https://doi.org/10.1038/S41592-022-01461-Y>,
+        "pubmed:35501385" ;
+    sc:description "Simultaneous profiling of intra-nuclear proteins, chromatin accessibility and gene expression in single cells." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_3196,
+        edam:operation_3800 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "NEAT-seq" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/GreenleafLab/NEAT-seq_reproducibility" .
+
 <https://bio.tools/neatb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0634,
@@ -326963,8 +341149,31 @@ NeAT (Neuroimaging Analysis Toolbox) is a command-line toolbox written in Python
     sc:name "NeATB" ;
     sc:url "https://imatge-upc.github.io/neat-tool/" .
 
+<https://bio.tools/neatms> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0769,
+        edam:topic_3172,
+        edam:topic_3474,
+        edam:topic_3520 ;
+    sc:citation <https://doi.org/10.1021/ACS.ANALCHEM.1C02220>,
+        "pmcid:PMC8969107",
+        "pubmed:35290737" ;
+    sc:description "NeatMS is an open source python package for untargeted LCMS signal labelling and filtering. NeatMS enables automated filtering of false positive MS peaks reported by commonly used LCMS data processing pipelines. NeatMS relies on neural network based classification." ;
+    sc:featureList edam:operation_3215,
+        edam:operation_3695,
+        edam:operation_3927 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "NeatMS" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://neatms.readthedocs.io/en/latest/> ;
+    sc:url "https://anaconda.org/bioconda/neatms" .
+
 <https://bio.tools/nebcutter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0654,
@@ -326987,7 +341196,7 @@ NeAT (Neuroimaging Analysis Toolbox) is a command-line toolbox written in Python
     biotools:primaryContact "Contact Form" .
 
 <https://bio.tools/nebula> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3125,
         edam:topic_3169,
@@ -327003,7 +341212,7 @@ NeAT (Neuroimaging Analysis Toolbox) is a command-line toolbox written in Python
     sc:url "https://nebula.curie.fr/" .
 
 <https://bio.tools/nebula-kmer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0625,
@@ -327025,7 +341234,7 @@ Nebula is a mapping-free approach for accurate and efficient genotyping of SVs.
     sc:url "https://github.com/Parsoa/Nebula" .
 
 <https://bio.tools/nebulosa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2229,
@@ -327040,7 +341249,7 @@ Due to the sparsity observed in single-cell data (e.g. RNA-seq, ATAC-seq), the v
     sc:url "http://www.github.com/powellgenomicslab/Nebulosa" .
 
 <https://bio.tools/necare> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -327063,7 +341272,7 @@ The feature NECARE used include:1) knowledge-based feature OPA2Vec; 2)cancer spe
     sc:url "https://github.com/JiajunQiu/NECARE" .
 
 <https://bio.tools/necat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0196 ;
     sc:citation <https://doi.org/10.1038/s41467-020-20236-7> ;
@@ -327076,7 +341285,7 @@ The feature NECARE used include:1) knowledge-based feature OPA2Vec; 2)cancer spe
     biotools:primaryContact <https://orcid.org/0000-0002-4680-0682> .
 
 <https://bio.tools/neci> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3314,
         edam:topic_3315,
@@ -327091,7 +341300,7 @@ FCIQMC code developed by George Booth and Ali Alavi, 2013.""" ;
     sc:url "https://github.com/ghb24/NECI_STABLE" .
 
 <https://bio.tools/necklace> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3170,
@@ -327108,7 +341317,7 @@ FCIQMC code developed by George Booth and Ali Alavi, 2013.""" ;
         "Nadia M Davidson" .
 
 <https://bio.tools/neco> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Script" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -327127,7 +341336,7 @@ NECo is a node embedding tool that utilizes multiplex heterogeneous gene phenoty
     sc:url "https://github.com/bozdaglab/NECo" .
 
 <https://bio.tools/necom> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0621,
@@ -327144,7 +341353,7 @@ NECo is a node embedding tool that utilizes multiplex heterogeneous gene phenoty
     sc:url "https://github.com/Jingyi-Cai/NECom.git" .
 
 <https://bio.tools/nedd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0208,
         edam:topic_0634,
@@ -327163,7 +341372,7 @@ NEDD is an novel computational method, which utilizes heterogeneous information
     sc:url "http://bioinformatics.csu.edu.cn/resources/softs/DrugRepositioning/n_Web/NEDD.html" .
 
 <https://bio.tools/neddpred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0601,
         edam:topic_0634,
@@ -327181,24 +341390,45 @@ As the detection of the lysine neddylation sites by the traditional experimental
     sc:name "NeddPred" ;
     sc:url "http://123.206.31.171/NeddPred/" .
 
+<https://bio.tools/nedrex> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Desktop application" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0602,
+        edam:topic_0634,
+        edam:topic_3336,
+        edam:topic_3407 ;
+    sc:citation <https://doi.org/10.1038/S41467-021-27138-2>,
+        "pmcid:PMC8617287",
+        "pubmed:34824199" ;
+    sc:description "Network medicine for disease module identification and drug repurposing with the NeDRex platform." ;
+    sc:featureList edam:operation_3431,
+        edam:operation_3927,
+        edam:operation_4009 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "NeDRex" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://nedrex.net/about.html>,
+        <https://nedrex.net/tutorial> ;
+    sc:url "https://apps.cytoscape.org/apps/nedrex" .
+
 <https://bio.tools/needle> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ],
+            sc:additionalType "http://edamontology.org/data_0874" ;
+            sc:name "Comparison matrix" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0874" ;
-            sc:name "Comparison matrix" ;
-            sc:sameAs "http://edamontology.org/data_0874" ],
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1381" ;
-            sc:name "Sequence alignment (pair)" ;
-            sc:sameAs "http://edamontology.org/data_1381" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1381" ;
+            sc:name "Sequence alignment (pair)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0097 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -327228,7 +341458,7 @@ As the detection of the lysine neddylation sites by the traditional experimental
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/needle.html" .
 
 <https://bio.tools/needle-api-ebi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1093/nar/gkv1352> ;
@@ -327244,19 +341474,18 @@ As the detection of the lysine neddylation sites by the traditional experimental
 
 <https://bio.tools/needle-ebi> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1381" ;
-            sc:name "Sequence alignment (pair)" ;
-            sc:sameAs "http://edamontology.org/data_1381" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1381" ;
+            sc:name "Sequence alignment (pair)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:author "EMBOSS",
-        "Web Production" ;
-    sc:citation <https://doi.org/10.1016/0022-2836(70)90057-4> ;
+        "Job Dispatcher" ;
+    sc:citation <https://doi.org/10.1016/0022-2836(70)90057-4>,
+        <https://doi.org/10.1093/nar/gkac240> ;
     sc:description "Needleman-Wunsch global alignment of two sequences." ;
     sc:featureList edam:operation_0491,
         edam:operation_0496 ;
@@ -327269,10 +341498,10 @@ As the detection of the lysine neddylation sites by the traditional experimental
         <http://www.ebi.ac.uk/about/terms-of-use> ;
     sc:softwareVersion "1" ;
     sc:url "http://www.ebi.ac.uk/Tools/psa/emboss_needle/" ;
-    biotools:primaryContact "Web Production" .
+    biotools:primaryContact "Job Dispatcher Team" .
 
 <https://bio.tools/needle_ws_husar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1016/0022-2836(70)90057-4> ;
@@ -327288,22 +341517,18 @@ As the detection of the lysine neddylation sites by the traditional experimental
 
 <https://bio.tools/needleall> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ],
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ],
+            sc:additionalType "http://edamontology.org/data_0874" ;
+            sc:name "Comparison matrix" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0874" ;
-            sc:name "Comparison matrix" ;
-            sc:sameAs "http://edamontology.org/data_0874" ] ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1381" ;
-            sc:name "Sequence alignment (pair)" ;
-            sc:sameAs "http://edamontology.org/data_1381" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1381" ;
+            sc:name "Sequence alignment (pair)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0097 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -327334,14 +341559,12 @@ As the detection of the lysine neddylation sites by the traditional experimental
 
 <https://bio.tools/needles> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2127" ;
-            sc:name "Genetic code identifier" ;
-            sc:sameAs "http://edamontology.org/data_2127" ] ;
+            sc:additionalType "http://edamontology.org/data_2127" ;
+            sc:name "Genetic code identifier" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1270" ;
-            sc:name "Feature table" ;
-            sc:sameAs "http://edamontology.org/data_1270" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1270" ;
+            sc:name "Feature table" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0622 ;
     sc:citation <https://doi.org/10.1534/genetics.115.179887> ;
@@ -327357,7 +341580,7 @@ As the detection of the lysine neddylation sites by the traditional experimental
     sc:url "https://github.com/arnedc/Needles" .
 
 <https://bio.tools/needlestack> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_3168,
@@ -327381,7 +341604,7 @@ As the detection of the lysine neddylation sites by the traditional experimental
         "Tiffany Delhomme" .
 
 <https://bio.tools/neemo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0081 ;
     sc:citation <https://doi.org/10.1186/1471-2164-15-S4-S7> ;
@@ -327399,61 +341622,58 @@ As the detection of the lysine neddylation sites by the traditional experimental
 
 <https://bio.tools/neemp> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2526" ;
-            sc:name "Text data" ;
-            sc:sameAs "http://edamontology.org/data_2526" ],
+            sc:additionalType "http://edamontology.org/data_1463" ;
+            sc:encodingFormat "http://edamontology.org/format_3814" ;
+            sc:name "Small molecule structure" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1917" ;
-            sc:name "Atomic property" ;
-            sc:sameAs "http://edamontology.org/data_1917" ],
+            sc:additionalType "http://edamontology.org/data_1463" ;
+            sc:encodingFormat "http://edamontology.org/format_3814" ;
+            sc:name "Small molecule structure" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2526" ;
-            sc:name "Text data" ;
-            sc:sameAs "http://edamontology.org/data_2526" ],
+            sc:additionalType "http://edamontology.org/data_1917" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Atomic property" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2526" ;
-            sc:name "Text data" ;
-            sc:sameAs "http://edamontology.org/data_2526" ],
+            sc:additionalType "http://edamontology.org/data_1463" ;
+            sc:encodingFormat "http://edamontology.org/format_3814" ;
+            sc:name "Small molecule structure" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1917" ;
-            sc:name "Atomic property" ;
-            sc:sameAs "http://edamontology.org/data_1917" ],
+            sc:additionalType "http://edamontology.org/data_1463" ;
+            sc:encodingFormat "http://edamontology.org/format_3814" ;
+            sc:name "Small molecule structure" ],
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-            sc:identifier "http://edamontology.org/data_1463" ;
-            sc:name "Small molecule structure" ;
-            sc:sameAs "http://edamontology.org/data_1463" ],
+            sc:additionalType "http://edamontology.org/data_2526" ;
+            sc:name "Text data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1463" ;
-            sc:name "Small molecule structure" ;
-            sc:sameAs "http://edamontology.org/data_1463" ],
+            sc:additionalType "http://edamontology.org/data_2526" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Text data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1463" ;
-            sc:name "Small molecule structure" ;
-            sc:sameAs "http://edamontology.org/data_1463" ],
+            sc:additionalType "http://edamontology.org/data_2526" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Text data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1463" ;
-            sc:name "Small molecule structure" ;
-            sc:sameAs "http://edamontology.org/data_1463" ] ;
+            sc:additionalType "http://edamontology.org/data_1917" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Atomic property" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ],
+            sc:additionalType "http://edamontology.org/data_2526" ;
+            sc:name "Text data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1917" ;
-            sc:name "Atomic property" ;
-            sc:sameAs "http://edamontology.org/data_1917" ],
+            sc:additionalType "http://edamontology.org/data_1917" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Atomic property" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ],
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:name "Report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2526" ;
-            sc:name "Text data" ;
-            sc:sameAs "http://edamontology.org/data_2526" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3332 ;
-    sc:author "Tomáš Raček" ;
+    sc:author <https://orcid.org/0000-0002-0296-2452> ;
     sc:citation <https://doi.org/10.1186/s13321-016-0171-1>,
         "pmcid:PMC5067907",
         "pubmed:27803746" ;
@@ -327467,15 +341687,14 @@ As the detection of the lysine neddylation sites by the traditional experimental
         "Windows" ;
     sc:provider "Central European Institute of Technology, Brno",
         "ELIXIR-CZ",
-        "National Centre for Biomolecular Research, Masaryk University, Brno",
-        "mail.muni.cz" ;
+        "National Centre for Biomolecular Research, Masaryk University, Brno" ;
     sc:softwareHelp <http://webchem.ncbr.muni.cz/Wiki/NEEMP:UserManual> ;
     sc:softwareVersion "1" ;
     sc:url "http://ncbr.muni.cz/neemp" ;
-    biotools:primaryContact "Tomáš Raček" .
+    biotools:primaryContact <https://orcid.org/0000-0002-0296-2452> .
 
 <https://bio.tools/negatome> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0128,
@@ -327498,7 +341717,7 @@ As the detection of the lysine neddylation sites by the traditional experimental
     biotools:primaryContact "Dmitrij Frishman" .
 
 <https://bio.tools/negstacking> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3336,
@@ -327513,7 +341732,7 @@ This is the repository containing the source code for research, namely NegStacki
     sc:url "https://github.com/Open-ss/NegStacking" .
 
 <https://bio.tools/neighbor-gwas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_0625,
@@ -327533,8 +341752,48 @@ R source codes, accession list, and phenotype data used in "Neighbor GWAS: incor
     sc:name "neighbor GWAS" ;
     sc:url "https://cran.r-project.org/package=rNeighborGWAS" .
 
+<https://bio.tools/neighbor-seq> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0602,
+        edam:topic_2229,
+        edam:topic_2830,
+        edam:topic_3308,
+        edam:topic_3318 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAC333>,
+        "pubmed:35536255" ;
+    sc:description "Reconstructing physical cell interaction networks from single-cell data using Neighbor-seq." ;
+    sc:featureList edam:operation_3200,
+        edam:operation_3435,
+        edam:operation_3436,
+        edam:operation_3501 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "Neighbor-seq" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/sjdlabgroup/Neighborseq" .
+
+<https://bio.tools/neighbor2neighbor> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_3382,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1109/TIP.2022.3176533>,
+        "pubmed:35679376" ;
+    sc:description "A Self-Supervised Framework for Deep Image Denoising." ;
+    sc:featureList edam:operation_3443 ;
+    sc:isAccessibleForFree true ;
+    sc:license "BSD-3-Clause" ;
+    sc:name "Neighbor2Neighbor" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/TaoHuang2018/Neighbor2Neighbor" .
+
 <https://bio.tools/neighbor_qtl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0625,
@@ -327556,7 +341815,7 @@ To enable quantitative trait loci mapping of neighbor effects, this package exte
     sc:url "https://cran.r-project.org/package=rNeighborQTL" .
 
 <https://bio.tools/nelly> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0593,
         edam:topic_0749,
@@ -327576,7 +341835,7 @@ To enable quantitative trait loci mapping of neighbor effects, this package exte
     sc:url "https://github.com/YaleTHz/nelly" .
 
 <https://bio.tools/nels> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web API",
         "Web service",
@@ -327604,7 +341863,7 @@ It can be accessed via a web application, web API, and SSH. Online analysis of d
     biotools:primaryContact "Help (Support)" .
 
 <https://bio.tools/nem> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0602,
@@ -327624,7 +341883,7 @@ It can be accessed via a web application, web API, and SSH. Online analysis of d
     biotools:primaryContact "Holger Froehlich" .
 
 <https://bio.tools/nembase4> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0623,
@@ -327648,7 +341907,7 @@ It can be accessed via a web application, web API, and SSH. Online analysis of d
     biotools:primaryContact "John Parkinson" .
 
 <https://bio.tools/nemine> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0089,
@@ -327668,7 +341927,7 @@ It can be accessed via a web application, web API, and SSH. Online analysis of d
     biotools:primaryContact "Yutaka Sasaki" .
 
 <https://bio.tools/nemo-tms> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3300,
@@ -327685,7 +341944,7 @@ Neuron Modeling for TMS (NeMo-TMS) toolbox is for multi-scale modeling of the ef
     sc:url "https://github.com/OpitzLab/NeMo-TMS" .
 
 <https://bio.tools/neo4covid19> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0202,
@@ -327708,7 +341967,7 @@ Network analysis for therapeutic insights.""" ;
     sc:url "https://neo4covid19.ncats.io" .
 
 <https://bio.tools/neoant-hill> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0769,
@@ -327730,7 +341989,7 @@ neoANT-HILL is a python toolkit that integrates several pipelines for fully auto
     sc:url "https://github.com/neoanthill/neoANT-HILL" .
 
 <https://bio.tools/neoantigen> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0199,
@@ -327748,7 +342007,7 @@ Abstract It is known that some mutated peptides, such as those resulting from mi
     sc:url "https://github.com/hase62/Neoantimon" .
 
 <https://bio.tools/neoantimon> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0199,
@@ -327768,7 +342027,7 @@ It is known that some mutant peptides, such as those resulting from missense mut
     sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=33123738" .
 
 <https://bio.tools/neobio> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3307,
@@ -327786,14 +342045,14 @@ It is known that some mutant peptides, such as those resulting from missense mut
 
 <https://bio.tools/neodl> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ] ;
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Sequence features" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2087" ;
-            sc:name "Molecular property" ;
-            sc:sameAs "http://edamontology.org/data_2087" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2087" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Molecular property" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3170,
@@ -327816,7 +342075,7 @@ It is known that some mutant peptides, such as those resulting from missense mut
     sc:url "https://github.com/zhangjbig/neoDL" .
 
 <https://bio.tools/neofox> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Suite" ;
     sc:applicationSubCategory edam:topic_0199,
@@ -327836,7 +342095,7 @@ It is known that some mutant peptides, such as those resulting from missense mut
     sc:url "https://github.com/TRON-Bioinformatics/neofox" .
 
 <https://bio.tools/neopeptide_analyser> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0121,
@@ -327855,8 +342114,55 @@ It is known that some mutant peptides, such as those resulting from missense mut
     sc:url "https://github.com/PGB-LIV/neo-pep-tool/releases/" ;
     biotools:primaryContact "Mandy Peffers" .
 
+<https://bio.tools/neors> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0769,
+        edam:topic_3360,
+        edam:topic_3384,
+        edam:topic_3444 ;
+    sc:citation <https://doi.org/10.3389/FNINF.2022.843114>,
+        "pmcid:PMC9247272",
+        "pubmed:35784189" ;
+    sc:description "A Neonatal Resting State fMRI Data Preprocessing Pipeline." ;
+    sc:featureList edam:operation_3435,
+        edam:operation_3443,
+        edam:operation_3659 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "NeoRS" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/venguix/NeoRS" .
+
+<https://bio.tools/neosplice> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_2830,
+        edam:topic_3170,
+        edam:topic_3320,
+        edam:topic_3520 ;
+    sc:citation <https://doi.org/10.1093/BIOADV/VBAC032>,
+        "pmcid:PMC9154024",
+        "pubmed:35669345" ;
+    sc:description "A bioinformatics method for prediction of splice variant neoantigens." ;
+    sc:featureList edam:operation_0252,
+        edam:operation_0264,
+        edam:operation_0433,
+        edam:operation_0526,
+        edam:operation_3800 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "NeoSplice" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/Benjamin-Vincent-Lab/NeoSplice" .
+
 <https://bio.tools/nep> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2830,
         edam:topic_3297,
@@ -327876,7 +342182,7 @@ It is known that some mutant peptides, such as those resulting from missense mut
     biotools:primaryContact "Support" .
 
 <https://bio.tools/nepdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_2640,
@@ -327897,7 +342203,7 @@ It is known that some mutant peptides, such as those resulting from missense mut
         "Yu Zhou" .
 
 <https://bio.tools/nephele> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_1775,
         edam:topic_3174,
@@ -327914,7 +342220,7 @@ It is known that some mutant peptides, such as those resulting from missense mut
     biotools:primaryContact "Nephele Support" .
 
 <https://bio.tools/neptune> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0622,
@@ -327932,7 +342238,7 @@ It is known that some mutant peptides, such as those resulting from missense mut
     biotools:primaryContact "Eric Marinier" .
 
 <https://bio.tools/neptune-med> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0208,
         edam:topic_0769,
@@ -327951,7 +342257,7 @@ Genomic medicine holds great promise for improving healthcare, but integrating s
     sc:url "https://gitlab.com/bcm-hgsc/neptune" .
 
 <https://bio.tools/neptune_genome> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0208,
         edam:topic_3063,
@@ -327974,7 +342280,7 @@ Genomic medicine holds great promise for improving healthcare, but integrating s
     sc:url "https://gitlab.com/bcm-hgsc/neptune" .
 
 <https://bio.tools/nerdd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3172,
@@ -327997,18 +342303,17 @@ Regioselectivity prediction for phase 1 and phase 2 metabolism.""" ;
 
 <https://bio.tools/nerpa> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1463" ;
-            sc:name "Small molecule structure" ;
-            sc:sameAs "http://edamontology.org/data_1463" ],
+            sc:additionalType "http://edamontology.org/data_0925" ;
+            sc:encodingFormat "http://edamontology.org/format_1936" ;
+            sc:name "Sequence assembly" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0925" ;
-            sc:name "Sequence assembly" ;
-            sc:sameAs "http://edamontology.org/data_0925" ] ;
+            sc:additionalType "http://edamontology.org/data_1463" ;
+            sc:encodingFormat "http://edamontology.org/format_1196" ;
+            sc:name "Small molecule structure" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0893" ;
-            sc:name "Sequence-structure alignment" ;
-            sc:sameAs "http://edamontology.org/data_0893" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0893" ;
+            sc:name "Sequence-structure alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0154,
@@ -328029,8 +342334,31 @@ Regioselectivity prediction for phase 1 and phase 2 metabolism.""" ;
     sc:url "https://cab.spbu.ru/software/nerpa/" ;
     biotools:primaryContact <http://orcid.org/0000-0002-5855-3519> .
 
+<https://bio.tools/nes> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0219,
+        edam:topic_0749,
+        edam:topic_3300,
+        edam:topic_3304,
+        edam:topic_3361 ;
+    sc:citation <https://doi.org/10.3389/FNINF.2021.768615>,
+        "pmcid:PMC8777234",
+        "pubmed:35069167" ;
+    sc:description "Software Tool to Manage Experimental Data and Its Provenance." ;
+    sc:featureList edam:operation_2426,
+        edam:operation_3435 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MPL-2.0" ;
+    sc:name "NES" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://nes.readthedocs.io/en/latest/> ;
+    sc:url "https://github.com/neuromat/nes" .
+
 <https://bio.tools/nesoni> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3293 ;
@@ -328043,7 +342371,7 @@ Regioselectivity prediction for phase 1 and phase 2 metabolism.""" ;
     biotools:primaryContact "GitHub Issues" .
 
 <https://bio.tools/ness> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0602,
@@ -328064,7 +342392,7 @@ NESS aggregates and harmonizes heterogeneous graph types including ontologies an
     sc:url "https://github.com/treynr/ness" .
 
 <https://bio.tools/nessm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3168,
         edam:topic_3174,
@@ -328081,7 +342409,7 @@ NESS aggregates and harmonizes heterogeneous graph types including ontologies an
     biotools:primaryContact "Support" .
 
 <https://bio.tools/nest> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3304,
@@ -328099,7 +342427,7 @@ NESS aggregates and harmonizes heterogeneous graph types including ontologies an
     sc:url "http://www.nest-simulator.org/" .
 
 <https://bio.tools/nest-gene> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -328115,8 +342443,30 @@ NESS aggregates and harmonizes heterogeneous graph types including ontologies an
     sc:url "http://nest.dfci.harvard.edu/" ;
     biotools:primaryContact "Peng Jiang" .
 
+<https://bio.tools/nest_desktop> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Desktop application",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_3068,
+        edam:topic_3304,
+        edam:topic_3524 ;
+    sc:citation <https://doi.org/10.1523/ENEURO.0274-21.2021>,
+        "pmcid:PMC8638679",
+        "pubmed:34764188" ;
+    sc:description "Construct neuronal networks and explore network dynamics" ;
+    sc:featureList edam:operation_0337,
+        edam:operation_2426,
+        edam:operation_3927 ;
+    sc:license "MIT" ;
+    sc:name "NEST Desktop" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://nest-desktop.readthedocs.io> ;
+    sc:url "https://ebrains.eu/service/nest-desktop" .
+
 <https://bio.tools/nested> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0199,
         edam:topic_0621,
@@ -328136,30 +342486,30 @@ Software to recursively identify TEs or other inserted sequences and cut them ou
 
 <https://bio.tools/net-ge> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3021" ;
-            sc:name "UniProt accession" ;
-            sc:sameAs "http://edamontology.org/data_3021" ] ;
+            sc:additionalType "http://edamontology.org/data_3021" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "UniProt accession" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1155" ;
-            sc:name "Pathway ID (reactome)" ;
-            sc:sameAs "http://edamontology.org/data_1155" ],
+            sc:additionalType "http://edamontology.org/data_3028" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Taxonomy" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1176" ;
-            sc:name "GO concept ID" ;
-            sc:sameAs "http://edamontology.org/data_1176" ],
+            sc:additionalType "http://edamontology.org/data_1155" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Pathway ID (reactome)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3028" ;
-            sc:name "Taxonomy" ;
-            sc:sameAs "http://edamontology.org/data_3028" ],
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Pathway or network" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ],
+            sc:additionalType "http://edamontology.org/data_1176" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "GO concept ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2343" ;
-            sc:name "Pathway ID (KEGG)" ;
-            sc:sameAs "http://edamontology.org/data_2343" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2343" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Pathway ID (KEGG)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_1775 ;
     sc:citation <https://doi.org/10.1186/1471-2164-16-S8-S6>,
@@ -328182,7 +342532,7 @@ Software to recursively identify TEs or other inserted sequences and cut them ou
         "Samuele Bovo" .
 
 <https://bio.tools/net-rstq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3170,
@@ -328199,7 +342549,7 @@ Software to recursively identify TEs or other inserted sequences and cut them ou
     biotools:primaryContact "Rui Kuang" .
 
 <https://bio.tools/net_bio> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:description """".NET Bio is an open source library of common bioinformatics functions, intended to simplify the creation of life science applications.
@@ -328215,14 +342565,14 @@ The core library implements a range of file parsers and formatters for common fi
 
 <https://bio.tools/netacet> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Protein features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/bti130>,
@@ -328240,7 +342590,7 @@ The core library implements a range of file parsers and formatters for common fi
     biotools:primaryContact "Henrik Nielsen" .
 
 <https://bio.tools/netae> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0769,
@@ -328261,7 +342611,7 @@ Network-enhanced autoencoder (netAE) is a semi-supervised dimensionality reducti
     sc:url "https://github.com/LeoZDong/netAE" .
 
 <https://bio.tools/netaligner> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0128,
@@ -328279,18 +342629,18 @@ Network-enhanced autoencoder (netAE) is a semi-supervised dimensionality reducti
 
 <https://bio.tools/netaspgene> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ],
+            sc:additionalType "http://edamontology.org/data_2955" ;
+            sc:encodingFormat "http://edamontology.org/format_2333" ;
+            sc:name "Sequence report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2955" ;
-            sc:name "Sequence report" ;
-            sc:sameAs "http://edamontology.org/data_2955" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Protein features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3512 ;
@@ -328310,7 +342660,7 @@ Network-enhanced autoencoder (netAE) is a semi-supervised dimensionality reducti
     sc:url "http://cbs.dtu.dk/services/NetAspGene/" .
 
 <https://bio.tools/netautoprobit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_1775,
@@ -328327,7 +342677,7 @@ Network-enhanced autoencoder (netAE) is a semi-supervised dimensionality reducti
     biotools:primaryContact "Eric D. Kolaczyk" .
 
 <https://bio.tools/netbenchmark> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -328350,18 +342700,18 @@ Network-enhanced autoencoder (netAE) is a semi-supervised dimensionality reducti
 
 <https://bio.tools/netbiov> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2082" ;
-            sc:name "Matrix" ;
-            sc:sameAs "http://edamontology.org/data_2082" ] ;
+            sc:additionalType "http://edamontology.org/data_2082" ;
+            sc:encodingFormat "http://edamontology.org/format_3604" ;
+            sc:name "Matrix" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ],
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Pathway or network" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -328383,7 +342733,7 @@ Network-enhanced autoencoder (netAE) is a semi-supervised dimensionality reducti
     biotools:primaryContact "Shailesh tripathi" .
 
 <https://bio.tools/netbox> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2259,
@@ -328400,7 +342750,7 @@ Network-enhanced autoencoder (netAE) is a semi-supervised dimensionality reducti
     sc:url "http://cbio.mskcc.org/tools/netbox/index.html" .
 
 <https://bio.tools/netboxr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0199,
@@ -328421,7 +342771,7 @@ GeneSetEnrichment, GraphAndNetwork, KEGG, Network, NetworkEnrichment, Pathways,
     sc:url "https://www.bioconductor.org/packages/release/bioc/html/netboxr.html" .
 
 <https://bio.tools/netcdf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Suite" ;
     sc:description "NetCDF (Network Common Data Form) is a set of software libraries and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data." ;
@@ -328430,14 +342780,14 @@ GeneSetEnrichment, GraphAndNetwork, KEGG, Network, NetworkEnrichment, Pathways,
 
 <https://bio.tools/netcglyc> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:encodingFormat "http://edamontology.org/format_2305" ;
+            sc:name "Protein features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0160 ;
@@ -328458,14 +342808,14 @@ GeneSetEnrichment, GraphAndNetwork, KEGG, Network, NetworkEnrichment, Pathways,
 
 <https://bio.tools/netchop> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Protein features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application",
         "Web service" ;
@@ -328486,14 +342836,12 @@ GeneSetEnrichment, GraphAndNetwork, KEGG, Network, NetworkEnrichment, Pathways,
 
 <https://bio.tools/netcleave> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2392" ;
-            sc:name "UniParc accession" ;
-            sc:sameAs "http://edamontology.org/data_2392" ],
+            sc:additionalType "http://edamontology.org/data_2392" ;
+            sc:name "UniParc accession" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3021" ;
-            sc:name "UniProt accession" ;
-            sc:sameAs "http://edamontology.org/data_3021" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3021" ;
+            sc:name "UniProt accession" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0602,
@@ -328517,7 +342865,7 @@ GeneSetEnrichment, GraphAndNetwork, KEGG, Network, NetworkEnrichment, Pathways,
     sc:url "https://github.com/pepamengual/NetCleave" .
 
 <https://bio.tools/netcoffee> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0128,
@@ -328531,7 +342879,7 @@ GeneSetEnrichment, GraphAndNetwork, KEGG, Network, NetworkEnrichment, Pathways,
     sc:url "https://github.com/screamer/netcoffee" .
 
 <https://bio.tools/netcom> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
@@ -328556,7 +342904,7 @@ GeneSetEnrichment, GraphAndNetwork, KEGG, Network, NetworkEnrichment, Pathways,
     sc:url "https://freilich-lab-tools.com/netcom/" .
 
 <https://bio.tools/netcomi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_2269,
@@ -328575,7 +342923,7 @@ NetCoMi (Network Comparison for Microbiome data) provides functions for construc
     sc:url "https://github.com/stefpeschel/NetCoMi" .
 
 <https://bio.tools/netcomm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0602,
@@ -328591,7 +342939,7 @@ NetCoMi (Network Comparison for Microbiome data) provides functions for construc
     sc:url "http://www.shawlab.org/NetComm/" .
 
 <https://bio.tools/netcontrol4biomed> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2640 ;
@@ -328609,7 +342957,7 @@ NetCoMi (Network Comparison for Microbiome data) provides functions for construc
     biotools:primaryContact "Ion Petre" .
 
 <https://bio.tools/netcooperate> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library",
         "Web application" ;
@@ -328635,7 +342983,7 @@ NetCoMi (Network Comparison for Microbiome data) provides functions for construc
         "Shiri Freilich" .
 
 <https://bio.tools/netcore> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0602,
@@ -328658,18 +343006,18 @@ NetCore is a network propagation approach based on node coreness, for phenotype-
 
 <https://bio.tools/netcorona> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2955" ;
-            sc:name "Sequence report" ;
-            sc:sameAs "http://edamontology.org/data_2955" ],
+            sc:additionalType "http://edamontology.org/data_2955" ;
+            sc:encodingFormat "http://edamontology.org/format_2333" ;
+            sc:name "Sequence report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Protein features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3510 ;
     sc:citation <https://doi.org/10.1186/1471-2105-5-72>,
@@ -328689,7 +343037,7 @@ NetCore is a network propagation approach based on node coreness, for phenotype-
     biotools:primaryContact "Ole Lund" .
 
 <https://bio.tools/netcssp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_2814,
@@ -328710,14 +343058,14 @@ NetCore is a network propagation approach based on node coreness, for phenotype-
 
 <https://bio.tools/netctl> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Protein features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application",
         "Web service" ;
@@ -328740,14 +343088,14 @@ NetCore is a network propagation approach based on node coreness, for phenotype-
 
 <https://bio.tools/netctlpan> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Protein features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3534 ;
     sc:citation <https://doi.org/10.1007/s00251-010-0441-4>,
@@ -328769,7 +343117,7 @@ NetCore is a network propagation approach based on node coreness, for phenotype-
     biotools:primaryContact <http://orcid.org/0000-0001-7885-4311> .
 
 <https://bio.tools/netdecoder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_1775,
@@ -328787,14 +343135,14 @@ NetCore is a network propagation approach based on node coreness, for phenotype-
 
 <https://bio.tools/netdiseasesnp> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2955" ;
-            sc:name "Sequence report" ;
-            sc:sameAs "http://edamontology.org/data_2955" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2955" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Sequence report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_1775 ;
     sc:citation <https://doi.org/10.1371/journal.pone.0068370>,
@@ -328815,7 +343163,7 @@ NetCore is a network propagation approach based on node coreness, for phenotype-
     biotools:primaryContact <http://orcid.org/0000-0001-6841-6676> .
 
 <https://bio.tools/netdx> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0769,
@@ -328836,7 +343184,7 @@ netDx is a general-purpose algorithm to build a patient classifier from heteroge
     sc:url "https://bioconductor.org/packages/release/bioc/html/netDx.html" .
 
 <https://bio.tools/netfrac> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3174,
         edam:topic_3293,
@@ -328854,30 +343202,30 @@ The R package NetFrac is used to calculate various distances and indices between
 
 <https://bio.tools/netge2-plus> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3021" ;
-            sc:name "UniProt accession" ;
-            sc:sameAs "http://edamontology.org/data_3021" ] ;
+            sc:additionalType "http://edamontology.org/data_3021" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "UniProt accession" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1155" ;
-            sc:name "Pathway ID (reactome)" ;
-            sc:sameAs "http://edamontology.org/data_1155" ],
+            sc:additionalType "http://edamontology.org/data_1155" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Pathway ID (reactome)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1176" ;
-            sc:name "GO concept ID" ;
-            sc:sameAs "http://edamontology.org/data_1176" ],
+            sc:additionalType "http://edamontology.org/data_3028" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Taxonomy" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2343" ;
-            sc:name "Pathway ID (KEGG)" ;
-            sc:sameAs "http://edamontology.org/data_2343" ],
+            sc:additionalType "http://edamontology.org/data_1176" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "GO concept ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ],
+            sc:additionalType "http://edamontology.org/data_2343" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Pathway ID (KEGG)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3028" ;
-            sc:name "Taxonomy" ;
-            sc:sameAs "http://edamontology.org/data_3028" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Pathway or network" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_1775 ;
     sc:author "Samuele Bovo" ;
@@ -328901,18 +343249,18 @@ The R package NetFrac is used to calculate various distances and indices between
 
 <https://bio.tools/netgene2> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ],
+            sc:additionalType "http://edamontology.org/data_2955" ;
+            sc:encodingFormat "http://edamontology.org/format_2333" ;
+            sc:name "Sequence report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2955" ;
-            sc:name "Sequence report" ;
-            sc:sameAs "http://edamontology.org/data_2955" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Protein features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0160,
@@ -328933,20 +343281,47 @@ The R package NetFrac is used to calculate various distances and indices between
     sc:softwareVersion "1.0" ;
     sc:url "http://cbs.dtu.dk/services/NetGene2/" .
 
+<https://bio.tools/netgenes> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2909" ;
+            sc:name "Organism name" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0602,
+        edam:topic_0621,
+        edam:topic_3053,
+        edam:topic_3293,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.3389/FGENE.2021.722198>,
+        "pmcid:PMC8495214",
+        "pubmed:34630517" ;
+    sc:description "A Database of Essential Genes Predicted Using Features From Interaction Networks." ;
+    sc:featureList edam:operation_2421,
+        edam:operation_2437,
+        edam:operation_2454,
+        edam:operation_3094 ;
+    sc:isAccessibleForFree true ;
+    sc:name "NetGenes" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://rbc-dsai-iitm.github.io/NetGenes/" .
+
 <https://bio.tools/netglycate> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ],
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:encodingFormat "http://edamontology.org/format_3467" ;
+            sc:name "Protein features" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2955" ;
-            sc:name "Sequence report" ;
-            sc:sameAs "http://edamontology.org/data_2955" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2955" ;
+            sc:encodingFormat "http://edamontology.org/format_2333" ;
+            sc:name "Sequence report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0080 ;
@@ -328965,7 +343340,7 @@ The R package NetFrac is used to calculate various distances and indices between
     biotools:primaryContact "Morten Bo Johansen" .
 
 <https://bio.tools/netgor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -328989,7 +343364,7 @@ and returns a data frame of gene-sets, their p-values, q-values derived from net
     sc:url "https://github.com/unistbig/netGO" .
 
 <https://bio.tools/netgsa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -329011,7 +343386,7 @@ and returns a data frame of gene-sets, their p-values, q-values derived from net
     sc:url "https://cran.r-project.org/web/packages/netgsa/index.html" .
 
 <https://bio.tools/nethet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0602 ;
@@ -329030,7 +343405,7 @@ and returns a data frame of gene-sets, their p-values, q-values derived from net
         "Nicolas Staedler" .
 
 <https://bio.tools/netinfer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0202,
@@ -329049,7 +343424,7 @@ and returns a data frame of gene-sets, their p-values, q-values derived from net
     sc:url "http://lmmd.ecust.edu.cn/netinfer/" .
 
 <https://bio.tools/netjack> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3304,
@@ -329070,7 +343445,7 @@ Tools for managing large sets of network data and performing whole network analy
     sc:url "https://cran.r-project.org/package=netjack" .
 
 <https://bio.tools/netlang> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0218,
         edam:topic_0602,
@@ -329090,7 +343465,7 @@ Tools for managing large sets of network data and performing whole network analy
     biotools:primaryContact "Lluís Barceló-Coblijn" .
 
 <https://bio.tools/netlogo-matlab-extension> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3315,
@@ -329107,7 +343482,7 @@ Tools for managing large sets of network data and performing whole network analy
     biotools:primaryContact "Matt Biggs" .
 
 <https://bio.tools/netmage> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0625,
@@ -329127,7 +343502,7 @@ Given genetic associations from a Phenome-Wide Association Study (PheWAS), a dis
     sc:url "https://hdpm.biomedinfolab.com" .
 
 <https://bio.tools/netmatch> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2259 ;
@@ -329146,7 +343521,7 @@ Given genetic associations from a Phenome-Wide Association Study (PheWAS), a dis
         "G. Bader" .
 
 <https://bio.tools/netmatchstar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0749 ;
@@ -329166,8 +343541,32 @@ Given genetic associations from a Phenome-Wide Association Study (PheWAS), a dis
     sc:url "https://alpha.dmi.unict.it/netmatchstar/netmatchstar.html" ;
     biotools:primaryContact <http://orcid.org/0000-0001-9843-7638> .
 
+<https://bio.tools/netme> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0089,
+        edam:topic_0218,
+        edam:topic_0602,
+        edam:topic_0769,
+        edam:topic_3473 ;
+    sc:citation <https://doi.org/10.1007/S41109-021-00435-X>,
+        "pmcid:PMC8733431",
+        "pubmed:35013714" ;
+    sc:description "On-the-fly knowledge network construction from biomedical literature." ;
+    sc:featureList edam:operation_3349,
+        edam:operation_3625,
+        edam:operation_3907,
+        edam:operation_3927 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "NETME" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://netme.click/" .
+
 <https://bio.tools/netmet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3172,
@@ -329192,14 +343591,14 @@ Environment files include lists of metabolites in their KEGG accessions.""" ;
 
 <https://bio.tools/netmhc> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Protein features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_3534 ;
@@ -329224,14 +343623,14 @@ Environment files include lists of metabolites in their KEGG accessions.""" ;
 
 <https://bio.tools/netmhccons> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Protein features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3534 ;
     sc:citation <https://doi.org/10.1007/s00251-011-0579-8>,
@@ -329253,14 +343652,14 @@ Environment files include lists of metabolites in their KEGG accessions.""" ;
 
 <https://bio.tools/netmhcii> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Protein features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_3534 ;
@@ -329283,14 +343682,14 @@ Environment files include lists of metabolites in their KEGG accessions.""" ;
 
 <https://bio.tools/netmhciipan> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Protein features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_3534 ;
@@ -329314,14 +343713,14 @@ Environment files include lists of metabolites in their KEGG accessions.""" ;
 
 <https://bio.tools/netmhcpan> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Protein features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_3534 ;
@@ -329345,14 +343744,14 @@ Environment files include lists of metabolites in their KEGG accessions.""" ;
 
 <https://bio.tools/netmhcstab> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Protein features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3534 ;
     sc:citation <https://doi.org/10.1111/imm.12160>,
@@ -329373,7 +343772,7 @@ Environment files include lists of metabolites in their KEGG accessions.""" ;
     biotools:primaryContact <http://orcid.org/0000-0001-7885-4311> .
 
 <https://bio.tools/netmix> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0602,
@@ -329393,14 +343792,14 @@ NetMix is an algorithm for identifying altered subnetworks with node scores that
 
 <https://bio.tools/netnes> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2955" ;
-            sc:name "Sequence report" ;
-            sc:sameAs "http://edamontology.org/data_2955" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2955" ;
+            sc:encodingFormat "http://edamontology.org/format_2333" ;
+            sc:name "Sequence report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0160 ;
@@ -329421,18 +343820,18 @@ NetMix is an algorithm for identifying altered subnetworks with node scores that
 
 <https://bio.tools/netnglyc> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2955" ;
-            sc:name "Sequence report" ;
-            sc:sameAs "http://edamontology.org/data_2955" ],
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2955" ;
+            sc:encodingFormat "http://edamontology.org/format_2333" ;
+            sc:name "Sequence report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0601 ;
@@ -329451,7 +343850,7 @@ NetMix is an algorithm for identifying altered subnetworks with node scores that
     biotools:primaryContact "Ramneek Gupta" .
 
 <https://bio.tools/netnmf-sc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2229,
@@ -329474,14 +343873,14 @@ NetMix is an algorithm for identifying altered subnetworks with node scores that
 
 <https://bio.tools/netoglyc> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:encodingFormat "http://edamontology.org/format_1974" ;
+            sc:name "Protein features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0601 ;
@@ -329504,7 +343903,7 @@ NetMix is an algorithm for identifying altered subnetworks with node scores that
     biotools:primaryContact <http://orcid.org/0000-0002-8192-2829> .
 
 <https://bio.tools/netpathminer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -329528,14 +343927,14 @@ NetMix is an algorithm for identifying altered subnetworks with node scores that
 
 <https://bio.tools/netphorest> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Protein features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0160 ;
@@ -329557,18 +343956,18 @@ NetMix is an algorithm for identifying altered subnetworks with node scores that
 
 <https://bio.tools/netphos> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ],
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Protein features" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2955" ;
-            sc:name "Sequence report" ;
-            sc:sameAs "http://edamontology.org/data_2955" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2955" ;
+            sc:encodingFormat "http://edamontology.org/format_2333" ;
+            sc:name "Sequence report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application",
         "Web service" ;
@@ -329590,14 +343989,14 @@ NetMix is an algorithm for identifying altered subnetworks with node scores that
 
 <https://bio.tools/netphosbac> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2955" ;
-            sc:name "Sequence report" ;
-            sc:sameAs "http://edamontology.org/data_2955" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2955" ;
+            sc:encodingFormat "http://edamontology.org/format_2305" ;
+            sc:name "Sequence report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0601 ;
     sc:author <http://orcid.org/0000-0003-3161-8690> ;
@@ -329618,18 +344017,18 @@ NetMix is an algorithm for identifying altered subnetworks with node scores that
 
 <https://bio.tools/netphosk> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ],
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2955" ;
-            sc:name "Sequence report" ;
-            sc:sameAs "http://edamontology.org/data_2955" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2955" ;
+            sc:encodingFormat "http://edamontology.org/format_2333" ;
+            sc:name "Sequence report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0601 ;
     sc:citation <https://doi.org/10.1002/pmic.200300771>,
@@ -329650,18 +344049,18 @@ NetMix is an algorithm for identifying altered subnetworks with node scores that
 
 <https://bio.tools/netphosyeast> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ],
+            sc:additionalType "http://edamontology.org/data_2955" ;
+            sc:encodingFormat "http://edamontology.org/format_2333" ;
+            sc:name "Sequence report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2955" ;
-            sc:name "Sequence report" ;
-            sc:sameAs "http://edamontology.org/data_2955" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0601 ;
     sc:author <http://orcid.org/0000-0001-7787-7853> ;
@@ -329682,18 +344081,18 @@ NetMix is an algorithm for identifying altered subnetworks with node scores that
 
 <https://bio.tools/netpicorna> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2955" ;
-            sc:name "Sequence report" ;
-            sc:sameAs "http://edamontology.org/data_2955" ],
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Protein features" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2955" ;
+            sc:encodingFormat "http://edamontology.org/format_2333" ;
+            sc:name "Sequence report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_3510 ;
@@ -329711,18 +344110,18 @@ NetMix is an algorithm for identifying altered subnetworks with node scores that
 
 <https://bio.tools/netplantgene> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2955" ;
-            sc:name "Sequence report" ;
-            sc:sameAs "http://edamontology.org/data_2955" ],
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Protein features" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2955" ;
+            sc:encodingFormat "http://edamontology.org/format_2333" ;
+            sc:name "Sequence report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3511,
         edam:topic_3512 ;
@@ -329744,7 +344143,7 @@ NetMix is an algorithm for identifying altered subnetworks with node scores that
     sc:url "http://www.cbs.dtu.dk/services/NetPGene/" .
 
 <https://bio.tools/netpredictionutility> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:description "The NET Prediction Utility can be used to compute predicted normalized elution time (NET) values for a list of peptide sequences." ;
@@ -329756,7 +344155,7 @@ NetMix is an algorithm for identifying altered subnetworks with node scores that
     sc:url "http://omics.pnl.gov/software/normalized-elution-time-net-prediction-utility" .
 
 <https://bio.tools/netpredictor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0154 ;
@@ -329776,7 +344175,7 @@ NetMix is an algorithm for identifying altered subnetworks with node scores that
     biotools:primaryContact "David J. Wild" .
 
 <https://bio.tools/netprior> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0602,
@@ -329796,7 +344195,7 @@ NetMix is an algorithm for identifying altered subnetworks with node scores that
     biotools:primaryContact "Fabian Schmich" .
 
 <https://bio.tools/netprophet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0602,
@@ -329811,7 +344210,7 @@ NetMix is an algorithm for identifying altered subnetworks with node scores that
     biotools:primaryContact "Michael R Brent" .
 
 <https://bio.tools/netquilt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -329831,7 +344230,7 @@ This is the repository for NetQuilt, a multispecies network-based protein functi
     sc:url "https://github.com/nowittynamesleft/NetQuilt" .
 
 <https://bio.tools/netrax> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_3293 ;
@@ -329849,7 +344248,7 @@ This is the repository for NetQuilt, a multispecies network-based protein functi
     sc:url "https://github.com/lutteropp/NetRAX" .
 
 <https://bio.tools/netreg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0622,
@@ -329872,7 +344271,7 @@ This is the repository for NetQuilt, a multispecies network-based protein functi
     biotools:primaryContact "Simon Dirmeier" .
 
 <https://bio.tools/netresponse> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0602,
@@ -329891,8 +344290,36 @@ This is the repository for NetQuilt, a multispecies network-based protein functi
     sc:url "http://bioconductor.org/packages/release/bioc/html/netresponse.html" ;
     biotools:primaryContact "Leo Lahti" .
 
+<https://bio.tools/netrex> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2295" ;
+            sc:name "Gene ID" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0602,
+        edam:topic_0780,
+        edam:topic_3170,
+        edam:topic_3810 ;
+    sc:citation <https://doi.org/10.1093/DATABASE/BAAC060>,
+        "pmcid:PMC9356536",
+        "pubmed:35932239" ;
+    sc:description "Network-based Rice Expression Analysis Server for abiotic stress conditions." ;
+    sc:featureList edam:operation_0224,
+        edam:operation_0314,
+        edam:operation_3463,
+        edam:operation_3501,
+        edam:operation_3766 ;
+    sc:isAccessibleForFree true ;
+    sc:name "NetREx" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://cdn.iiit.ac.in/cdn/bioinf.iiit.ac.in/netrex/tutorial.pdf> ;
+    sc:url "https://bioinf.iiit.ac.in/netrex/index.html" .
+
 <https://bio.tools/netsam> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0602,
@@ -329910,8 +344337,33 @@ This is the repository for NetQuilt, a multispecies network-based protein functi
     sc:url "http://bioconductor.org/packages/release/bioc/html/NetSAM.html" ;
     biotools:primaryContact "Bing Zhang" .
 
+<https://bio.tools/netseekr> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_0203,
+        edam:topic_0602,
+        edam:topic_0769,
+        edam:topic_3170 ;
+    sc:citation <https://doi.org/10.1186/S12859-021-04554-1>,
+        "pmcid:PMC8796424",
+        "pubmed:35090393" ;
+    sc:description "A network analysis pipeline for RNA-Seq time series data." ;
+    sc:featureList edam:operation_1781,
+        edam:operation_3223,
+        edam:operation_3463,
+        edam:operation_3565,
+        edam:operation_3766 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "NetSeekR" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/igbb-popescu-lab/NetSeekR" .
+
 <https://bio.tools/netsets> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0128,
@@ -329930,7 +344382,7 @@ An edge-list and the corresponding generated network are however composed of two
     sc:url "http://web.rniapps.net/netsets" .
 
 <https://bio.tools/netsig> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_2640 ;
@@ -329943,7 +344395,7 @@ An edge-list and the corresponding generated network are however composed of two
     sc:url "http://www.lagelab.org/resources/" .
 
 <https://bio.tools/netsim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0602 ;
@@ -329962,7 +344414,7 @@ An edge-list and the corresponding generated network are however composed of two
     biotools:primaryContact "Barbara Di Camillo" .
 
 <https://bio.tools/netsmooth> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3168,
@@ -329983,8 +344435,29 @@ An edge-list and the corresponding generated network are however composed of two
     sc:url "http://bioconductor.org/packages/release/bioc/html/netSmooth.html" ;
     biotools:primaryContact "Jonathan Ronen" .
 
+<https://bio.tools/netsolp> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0108,
+        edam:topic_0203,
+        edam:topic_3068 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAB801>,
+        "pubmed:34849581" ;
+    sc:description "Prediction of solubility and usability of proteins expressed in E. coli" ;
+    sc:featureList edam:operation_0409 ;
+    sc:isAccessibleForFree true ;
+    sc:name "NetSolP" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://services.healthtech.dtu.dk/service.php?NetSolP" .
+
 <https://bio.tools/netsplitter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2259,
@@ -330001,14 +344474,14 @@ An edge-list and the corresponding generated network are however composed of two
 
 <https://bio.tools/netstart> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Protein features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_3511 ;
@@ -330028,7 +344501,7 @@ An edge-list and the corresponding generated network are however composed of two
     biotools:primaryContact <https://orcid.org/0000-0001-9650-8965> .
 
 <https://bio.tools/netstrat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_3307 ;
     sc:citation "pubmed:26805938" ;
@@ -330041,14 +344514,14 @@ An edge-list and the corresponding generated network are however composed of two
 
 <https://bio.tools/netsurfp> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2085" ;
-            sc:name "Structure report" ;
-            sc:sameAs "http://edamontology.org/data_2085" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2085" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Structure report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0082 ;
@@ -330069,14 +344542,12 @@ An edge-list and the corresponding generated network are however composed of two
 
 <https://bio.tools/netter> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ] ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:name "Pathway or network" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:name "Pathway or network" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0602 ;
@@ -330093,7 +344564,7 @@ An edge-list and the corresponding generated network are however composed of two
     sc:url "http://bioinformatics.intec.ugent.be/netter/index.html" .
 
 <https://bio.tools/nettest> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3293,
@@ -330110,7 +344581,7 @@ An edge-list and the corresponding generated network are however composed of two
     biotools:primaryContact "Miguel Arenas" .
 
 <https://bio.tools/nettime> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3168,
@@ -330130,14 +344601,14 @@ An edge-list and the corresponding generated network are however composed of two
 
 <https://bio.tools/netturnp> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2085" ;
-            sc:name "Structure report" ;
-            sc:sameAs "http://edamontology.org/data_2085" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2085" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Structure report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082 ;
     sc:citation <https://doi.org/10.1371/journal.pone.0015079> ;
@@ -330155,14 +344626,14 @@ An edge-list and the corresponding generated network are however composed of two
 
 <https://bio.tools/netutr> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:encodingFormat "http://edamontology.org/format_2305" ;
+            sc:name "Protein features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3320 ;
     sc:citation <https://doi.org/10.1093/nar/gkh273>,
@@ -330182,7 +344653,7 @@ An edge-list and the corresponding generated network are however composed of two
     sc:url "http://cbs.dtu.dk/services/NetUTR/" .
 
 <https://bio.tools/netvenn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0203,
@@ -330205,7 +344676,7 @@ An edge-list and the corresponding generated network are however composed of two
     biotools:primaryContact "Yi Wang" .
 
 <https://bio.tools/netview> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0602,
@@ -330223,7 +344694,7 @@ An edge-list and the corresponding generated network are however composed of two
     sc:url "http://netview.tigem.it/netview_project/netview_tools.html" .
 
 <https://bio.tools/network2canvas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0602,
@@ -330240,7 +344711,7 @@ An edge-list and the corresponding generated network are however composed of two
     biotools:primaryContact "Avi Ma’ayan" .
 
 <https://bio.tools/network_analysis_provider> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602 ;
     sc:citation "pmcid:PMC5513407",
@@ -330254,7 +344725,7 @@ An edge-list and the corresponding generated network are however composed of two
     sc:url "http://bib.fleming.gr:3838/NAP/" .
 
 <https://bio.tools/network_archaeology> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2259,
@@ -330272,7 +344743,7 @@ An edge-list and the corresponding generated network are however composed of two
     biotools:primaryContact "Saket Navlakha" .
 
 <https://bio.tools/network_epistasis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2885,
         edam:topic_3974 ;
@@ -330289,14 +344760,12 @@ An edge-list and the corresponding generated network are however composed of two
 
 <https://bio.tools/network_motif_clustering_toolbox> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ] ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:name "Pathway or network" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:name "Pathway or network" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602 ;
     sc:citation <https://doi.org/10.1039/C1MB05241A> ;
@@ -330312,7 +344781,7 @@ An edge-list and the corresponding generated network are however composed of two
     sc:url "http://bioinformatics.psb.ugent.be/software/details/Network-Motif-Clustering-Toolbox" .
 
 <https://bio.tools/network_of_cancer_genes> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0199,
@@ -330335,7 +344804,7 @@ An edge-list and the corresponding generated network are however composed of two
     biotools:primaryContact "Thanos Mourikis" .
 
 <https://bio.tools/networkanalys> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0128,
@@ -330359,7 +344828,7 @@ An edge-list and the corresponding generated network are however composed of two
     biotools:primaryContact "Jianguo Xia" .
 
 <https://bio.tools/networkanalyst> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0203,
@@ -330378,18 +344847,18 @@ An edge-list and the corresponding generated network are however composed of two
 
 <https://bio.tools/networkbma> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Gene expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ] ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "Gene expression data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ],
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Image" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -330410,7 +344879,7 @@ An edge-list and the corresponding generated network are however composed of two
     biotools:primaryContact "Ka Yee Yeung" .
 
 <https://bio.tools/networkextinction> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3050,
@@ -330428,20 +344897,41 @@ The NetworkExtinction package contains the following man pages: chilean_intertid
     sc:name "NetworkExtinction" ;
     sc:url "https://rdrr.io/cran/NetworkExtinction/man/" .
 
+<https://bio.tools/networkgwas> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_0602,
+        edam:topic_0625,
+        edam:topic_2885,
+        edam:topic_3517 ;
+    sc:citation <https://doi.org/10.1101/2021.11.11.468206> ;
+    sc:description "A network-based approach for genome-wide association studies in structured populations." ;
+    sc:featureList edam:operation_3196,
+        edam:operation_3436,
+        edam:operation_3791 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "networkGWAS" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/BorgwardtLab/networkGWAS.git" .
+
 <https://bio.tools/networkin> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2299" ;
-            sc:name "Gene name" ;
-            sc:sameAs "http://edamontology.org/data_2299" ],
+            sc:additionalType "http://edamontology.org/data_2299" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Gene name" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2775" ;
-            sc:name "Kinase name" ;
-            sc:sameAs "http://edamontology.org/data_2775" ] ;
+            sc:additionalType "http://edamontology.org/data_2775" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Kinase name" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Protein features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0160 ;
     sc:citation <https://doi.org/10.1016/j.cell.2007.05.052>,
@@ -330460,7 +344950,7 @@ The NetworkExtinction package contains the following man pages: chilean_intertid
     sc:url "http://www.networkin.info/" .
 
 <https://bio.tools/networkrandomizer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0602 ;
     sc:citation <https://doi.org/10.12688/f1000research.9203.3> ;
@@ -330475,7 +344965,7 @@ The NetworkExtinction package contains the following man pages: chilean_intertid
     sc:url "http://apps.cytoscape.org/apps/networkrandomizer" .
 
 <https://bio.tools/netzoor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0625,
@@ -330495,7 +344985,7 @@ netZoo{R,Py,M,C} is a network biology package for the reconstruction and analysi
     sc:url "http://netzoo.github.io" .
 
 <https://bio.tools/neuca> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3170,
@@ -330517,8 +345007,53 @@ netZoo{R,Py,M,C} is a network biology package for the reconstruction and analysi
     sc:softwareHelp <https://bioconductor.org/packages/release/bioc/manuals/NeuCA/man/NeuCA.pdf> ;
     sc:url "https://github.com/haoharryfeng/NeuCA" .
 
+<https://bio.tools/neumapper> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_3304,
+        edam:topic_3315,
+        edam:topic_3384,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1162/NETN_A_00229>,
+        "pmcid:PMC9207992",
+        "pubmed:35733428" ;
+    sc:description "A scalable computational framework for multiscale exploration of the brain's dynamical organization." ;
+    sc:featureList edam:operation_1812,
+        edam:operation_3891,
+        edam:operation_3935 ;
+    sc:isAccessibleForFree true ;
+    sc:license "BSD-3-Clause-Clear" ;
+    sc:name "NeuMapper" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/braindynamicslab/neumapper" .
+
+<https://bio.tools/neupred> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_0625,
+        edam:topic_2885,
+        edam:topic_3168,
+        edam:topic_3517 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC024>,
+        "pmcid:PMC8963326",
+        "pubmed:35020805" ;
+    sc:description "A data-adaptive Bayesian regression approach for polygenic risk prediction." ;
+    sc:featureList edam:operation_3196,
+        edam:operation_3435,
+        edam:operation_3659 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "NeuPred" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/shuangsong0110/NeuPred" .
+
 <https://bio.tools/neuprint> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0611,
         edam:topic_0769,
@@ -330545,10 +345080,10 @@ Query plugins generate a form to take user input and query the neuPrint cypher a
 
 <https://bio.tools/neural_admixture> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0625,
@@ -330568,30 +345103,8 @@ Query plugins generate a form to take user input and query the neuPrint cypher a
         "Windows" ;
     sc:url "https://github.com/ai-sandbox/neural-admixture" .
 
-<https://bio.tools/neural_networks_breast_cancer_proteins> a sc:SoftwareApplication ;
-    sc:additionalType "Command-line tool" ;
-    sc:applicationSubCategory edam:topic_0602,
-        edam:topic_0634,
-        edam:topic_2640,
-        edam:topic_3360,
-        edam:topic_3474 ;
-    sc:citation <https://doi.org/10.1101/840108> ;
-    sc:description """Prediction of breast cancer proteins using molecular descriptors and artificial neural networks.
-
-neural-networks-for-breast-cancer-proteins.
-
-Machine Learning for breast cancer protein screening.
-
-This project is a collaboration from different institutions:.""" ;
-    sc:featureList edam:operation_2436,
-        edam:operation_3439,
-        edam:operation_3901 ;
-    sc:license "MIT" ;
-    sc:name "neural networks breast cancer proteins" ;
-    sc:url "https://github.com/muntisa/neural-networks-for-breast-cancer-proteins" .
-
 <https://bio.tools/neuralpolish> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Script" ;
     sc:applicationSubCategory edam:topic_0081,
@@ -330612,7 +345125,7 @@ This project is a collaboration from different institutions:.""" ;
         <https://orcid.org/0000-0003-1516-0480> .
 
 <https://bio.tools/neuro-captk> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_2640,
@@ -330634,7 +345147,7 @@ CaPTk is a software platform, written in C++, for analysis of radiographic image
     sc:url "http://www.cbica.upenn.edu/captk" .
 
 <https://bio.tools/neuro-learn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3304,
@@ -330657,8 +345170,30 @@ This documentation contains everything you need to know about NEURO-LEARN, inclu
     sc:softwareHelp <https://www.github.com/Raniac/NEURO-LEARN/wiki> ;
     sc:url "https://www.github.com/Raniac/NEURO-LEARN" .
 
+<https://bio.tools/neuroblu> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0218,
+        edam:topic_3063,
+        edam:topic_3263,
+        edam:topic_3305,
+        edam:topic_3419 ;
+    sc:citation <https://doi.org/10.1136/BMJOPEN-2021-057227>,
+        "pmcid:PMC9036423",
+        "pubmed:35459671" ;
+    sc:description "Electronic health record (EHR) trusted research environment (TRE) to support mental healthcare analytics with real-world data." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3283,
+        edam:operation_3435 ;
+    sc:isAccessibleForFree true ;
+    sc:name "NeuroBlu" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://www.neuroblu.ai" .
+
 <https://bio.tools/neurocirc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -330676,8 +345211,31 @@ This documentation contains everything you need to know about NEURO-LEARN, inclu
     sc:url "https://voineagulab.github.io/NeuroCirc/" ;
     biotools:primaryContact <https://orcid.org/0000-0003-4162-3872> .
 
+<https://bio.tools/neurocraft> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_3304,
+        edam:topic_3334,
+        edam:topic_3421,
+        edam:topic_3444,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1038/S41598-021-99195-Y>,
+        "pmcid:PMC8528833",
+        "pubmed:34671076" ;
+    sc:description "Software for microscale brain network dynamics." ;
+    sc:featureList edam:operation_3435,
+        edam:operation_3891,
+        edam:operation_3935 ;
+    sc:isAccessibleForFree true ;
+    sc:license "CC0-1.0" ;
+    sc:name "Neurocraft" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://www.neurocraft.co.uk/#download" .
+
 <https://bio.tools/neurodebian> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_3304,
         edam:topic_3384 ;
@@ -330692,7 +345250,7 @@ This documentation contains everything you need to know about NEURO-LEARN, inclu
         "Yaroslav O Halchenko" .
 
 <https://bio.tools/neuroelectro> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API" ;
     sc:applicationSubCategory edam:topic_3068,
         edam:topic_3071 ;
@@ -330709,7 +345267,7 @@ This documentation contains everything you need to know about NEURO-LEARN, inclu
     sc:url "http://neuroelectro.org/api/docs/" .
 
 <https://bio.tools/neurofit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3304,
@@ -330729,7 +345287,7 @@ This documentation contains everything you need to know about NEURO-LEARN, inclu
     biotools:primaryContact "Brad" .
 
 <https://bio.tools/neurolib> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_3299,
@@ -330748,8 +345306,28 @@ Read the gentle introduction to neurolib for an overview of the basic functional
     sc:name "neurolib" ;
     sc:url "https://neurolib-dev.github.io/" .
 
+<https://bio.tools/neuromaps> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_3304,
+        edam:topic_3384,
+        edam:topic_3407 ;
+    sc:citation <https://doi.org/10.1101/2022.01.06.475081> ;
+    sc:description "Structural and functional interpretation of brain maps." ;
+    sc:featureList edam:operation_2429,
+        edam:operation_2436,
+        edam:operation_3799 ;
+    sc:isAccessibleForFree true ;
+    sc:license "CC-BY-NC-SA-4.0" ;
+    sc:name "neuromaps" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://netneurolab.github.io/neuromaps" .
+
 <https://bio.tools/neuromatic> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_2815,
         edam:topic_3300,
@@ -330769,8 +345347,32 @@ Read the gentle introduction to neurolib for an overview of the basic functional
     sc:url "http://www.neuromatic.thinkrandom.com/" ;
     biotools:primaryContact "Jason S. Rothman" .
 
+<https://bio.tools/neuromechfly> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_3304,
+        edam:topic_3318,
+        edam:topic_3382,
+        edam:topic_3474,
+        edam:topic_3500 ;
+    sc:citation <https://doi.org/10.1038/S41592-022-01411-8>,
+        <https://doi.org/10.1038/S41592-022-01466-7>,
+        "pubmed:35545713",
+        "pubmed:35545716" ;
+    sc:description "Neuromechanical model of adult Drosophila melanogaster." ;
+    sc:featureList edam:operation_2426,
+        edam:operation_3891,
+        edam:operation_3927 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Apache-2.0" ;
+    sc:name "NeuroMechFly" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/NeLy-EPFL/NeuroMechFly" .
+
 <https://bio.tools/neuroml-db> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0108,
@@ -330789,7 +345391,7 @@ Read the gentle introduction to neurolib for an overview of the basic functional
     sc:url "http://NeuroML-DB.org" .
 
 <https://bio.tools/neuron> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3304,
@@ -330805,7 +345407,7 @@ Read the gentle introduction to neurolib for an overview of the basic functional
     sc:url "http://phet.colorado.edu/en/simulation/neuron" .
 
 <https://bio.tools/neuronactivitytool> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3304,
@@ -330824,7 +345426,7 @@ Read the gentle introduction to neurolib for an overview of the basic functional
         "Robert Blum" .
 
 <https://bio.tools/neuroncyto_ii> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3334,
@@ -330842,7 +345444,7 @@ Read the gentle introduction to neurolib for an overview of the basic functional
     sc:url "https://sites.google.com/site/neuroncyto/" .
 
 <https://bio.tools/neuropath2path> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0605,
         edam:topic_3300,
@@ -330862,7 +345464,7 @@ Read the gentle introduction to neurolib for an overview of the basic functional
     sc:url "https://github.com/50-Cent/NeuroPath2Path.git" .
 
 <https://bio.tools/neuropg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3334,
         edam:topic_3382 ;
@@ -330879,7 +345481,7 @@ Read the gentle introduction to neurolib for an overview of the basic functional
     biotools:primaryContact "Jacob T. Robinson" .
 
 <https://bio.tools/neuropid> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3306,
         edam:topic_3308,
@@ -330901,8 +345503,24 @@ Read the gentle introduction to neurolib for an overview of the basic functional
     biotools:primaryContact "For scientific enquiries and technical enquiries",
         "Solange Karsenty (For web issues)" .
 
+<https://bio.tools/neuropipred> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:citation <https://doi.org/10.1038/s41598-019-41538-x>,
+        "pmcid:PMC6435694",
+        "pubmed:30914676" ;
+    sc:description "NeuroPIpred is an in silico method, which is developed to predict and design insect neuropeptides with better efficacy for controlling pest from infesting various crops." ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "neuropipred" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/neuropipred/> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/neuropipred/" .
+
 <https://bio.tools/neuropm-box> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Suite" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -330921,7 +345539,7 @@ Read the gentle introduction to neurolib for an overview of the basic functional
     biotools:primaryContact <https://orcid.org/0000-0002-9345-0347> .
 
 <https://bio.tools/neuropred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0154,
@@ -330939,7 +345557,7 @@ Read the gentle introduction to neurolib for an overview of the basic functional
     biotools:primaryContact "Jonathan V. Sweedler" .
 
 <https://bio.tools/neuropred-frl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2269,
@@ -330960,7 +345578,7 @@ Read the gentle introduction to neurolib for an overview of the basic functional
         "Hiroyuki Kurata" .
 
 <https://bio.tools/neurora> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3304,
         edam:topic_3315,
@@ -330979,7 +345597,7 @@ NeuroRA is an easy-to-use toolbox based on Python, which can do some works about
     sc:url "https://neurora.github.io/NeuroRA/" .
 
 <https://bio.tools/neuroscinfframework> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0602,
@@ -331001,7 +345619,7 @@ NeuroRA is an easy-to-use toolbox based on Python, which can do some works about
     biotools:primaryContact "NIF Support" .
 
 <https://bio.tools/neurospeech> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3334 ;
@@ -331017,7 +345635,7 @@ NeuroRA is an easy-to-use toolbox based on Python, which can do some works about
     biotools:primaryContact "Juan Camilo Vasquez-Correa" .
 
 <https://bio.tools/neurotoxkb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0621,
@@ -331033,8 +345651,28 @@ Neurotoxicants are an important class of hazardous chemicals.""" ;
     sc:name "NeurotoxKb" ;
     sc:url "https://cb.imsc.res.in/neurotoxkb/" .
 
+<https://bio.tools/neuroxai> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_3384,
+        edam:topic_3444,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1007/S11548-022-02619-X>,
+        "pubmed:35460019" ;
+    sc:description "Explainability of deep neural networks for MRI analysis of brain tumors." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3443,
+        edam:operation_3927 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Apache-2.0" ;
+    sc:name "NeuroXAI" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/razeineldin/NeuroXAI" .
+
 <https://bio.tools/new_targets> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0632,
@@ -331055,7 +345693,7 @@ mega353.fasta A target file for use with target enrichment datasets captured usi
     sc:url "https://github.com/chrisjackson-pellicle/NewTargets" .
 
 <https://bio.tools/new_use_old_drugs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0202,
         edam:topic_0602,
@@ -331079,7 +345717,7 @@ mega353.fasta A target file for use with target enrichment datasets captured usi
     sc:url "http://pauling.mbu.iisc.ac.in/NOD/NOD/" .
 
 <https://bio.tools/newbler> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0196 ;
     sc:citation <https://doi.org/10.1186/gb4173> ;
@@ -331094,14 +345732,12 @@ mega353.fasta A target file for use with target enrichment datasets captured usi
 
 <https://bio.tools/newcpgreport> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2887" ;
-            sc:name "Nucleic acid sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2887" ] ;
+            sc:additionalType "http://edamontology.org/data_2887" ;
+            sc:name "Nucleic acid sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1276" ;
-            sc:name "Nucleic acid features" ;
-            sc:sameAs "http://edamontology.org/data_1276" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1276" ;
+            sc:name "Nucleic acid features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0157 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -331132,14 +345768,12 @@ mega353.fasta A target file for use with target enrichment datasets captured usi
 
 <https://bio.tools/newcpgreport-ebi> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ] ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:name "Nucleic acid sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1276" ;
-            sc:name "Nucleic acid features" ;
-            sc:sameAs "http://edamontology.org/data_1276" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1276" ;
+            sc:name "Nucleic acid features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0157,
         edam:topic_3512 ;
@@ -331161,14 +345795,12 @@ mega353.fasta A target file for use with target enrichment datasets captured usi
 
 <https://bio.tools/newcpgseek> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2887" ;
-            sc:name "Nucleic acid sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2887" ] ;
+            sc:additionalType "http://edamontology.org/data_2887" ;
+            sc:name "Nucleic acid sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1276" ;
-            sc:name "Nucleic acid features" ;
-            sc:sameAs "http://edamontology.org/data_1276" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1276" ;
+            sc:name "Nucleic acid features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0157 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -331198,7 +345830,7 @@ mega353.fasta A target file for use with target enrichment datasets captured usi
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/newcpgseek.html" .
 
 <https://bio.tools/newdna-prot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0654 ;
@@ -331212,7 +345844,7 @@ mega353.fasta A target file for use with target enrichment datasets captured usi
     biotools:primaryContact "Wei Zheng" .
 
 <https://bio.tools/newick_utilities> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0622,
@@ -331230,10 +345862,9 @@ mega353.fasta A target file for use with target enrichment datasets captured usi
 
 <https://bio.tools/newseq> a sc:SoftwareApplication ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -331263,7 +345894,7 @@ mega353.fasta A target file for use with target enrichment datasets captured usi
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/newseq.html" .
 
 <https://bio.tools/newt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0637 ;
@@ -331274,7 +345905,7 @@ mega353.fasta A target file for use with target enrichment datasets captured usi
     sc:url "http://www.ebi.ac.uk/newt/display" .
 
 <https://bio.tools/newt-omics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0621,
@@ -331296,7 +345927,7 @@ mega353.fasta A target file for use with target enrichment datasets captured usi
     biotools:primaryContact "Newt-Omics Support" .
 
 <https://bio.tools/newt-ve> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0602,
@@ -331316,7 +345947,7 @@ Newt is a free, web based, open source viewer and editor for pathways in Systems
     sc:url "http://newteditor.org" .
 
 <https://bio.tools/newwave> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_3170,
@@ -331336,7 +345967,7 @@ Newt is a free, web based, open source viewer and editor for pathways in Systems
     sc:url "https://bioconductor.org/packages/NewWave/" .
 
 <https://bio.tools/nexalign> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:description "Nexalign is a program to align millions of short reads from next-generation sequencing data sets to reference genomes" ;
@@ -331349,14 +345980,13 @@ Newt is a free, web based, open source viewer and editor for pathways in Systems
 
 <https://bio.tools/nextbio> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0842" ;
-            sc:name "Identifier" ;
-            sc:sameAs "http://edamontology.org/data_0842" ] ;
+            sc:additionalType "http://edamontology.org/data_0842" ;
+            sc:name "Identifier" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0916" ;
-            sc:name "Gene report" ;
-            sc:sameAs "http://edamontology.org/data_0916" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0916" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Gene report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0797 ;
@@ -331372,8 +346002,32 @@ Newt is a free, web based, open source viewer and editor for pathways in Systems
     sc:softwareHelp <https://www.nextbio.com/b/authentication/login.nb> ;
     sc:url "http://www.nextbio.com/" .
 
+<https://bio.tools/nextcast> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Suite" ;
+    sc:applicationSubCategory edam:topic_0659,
+        edam:topic_0769,
+        edam:topic_2258,
+        edam:topic_2840,
+        edam:topic_3360 ;
+    sc:citation <https://doi.org/10.1016/J.CSBJ.2022.03.014>,
+        "pmcid:PMC8956870",
+        "pubmed:35386103" ;
+    sc:description "A software suite to analyse and model toxicogenomics data." ;
+    sc:featureList edam:operation_3223,
+        edam:operation_3463,
+        edam:operation_3501,
+        edam:operation_3927 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "Nextcast" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/fhaive/nextcast" .
+
 <https://bio.tools/nextclip> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654 ;
@@ -331387,7 +346041,7 @@ Newt is a free, web based, open source viewer and editor for pathways in Systems
     sc:url "http://www.tgac.ac.uk/nextclip/" .
 
 <https://bio.tools/nextdenovo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196 ;
     sc:description "NextDenovo is a string graph-based de novo assembler for long reads (CLR, HiFi and ONT). It uses a \"correct-then-assemble\" strategy similar to canu (no correction step for PacBio Hifi reads), but requires significantly less computing resources and storages." ;
@@ -331399,7 +346053,7 @@ Newt is a free, web based, open source viewer and editor for pathways in Systems
     biotools:primaryContact "Nextomics" .
 
 <https://bio.tools/nextflow> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0622,
         edam:topic_0769,
@@ -331430,7 +346084,7 @@ Newt is a free, web based, open source viewer and editor for pathways in Systems
         <https://orcid.org/0000-0003-3220-0253> .
 
 <https://bio.tools/nextflu> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3299,
         edam:topic_3301 ;
@@ -331444,7 +346098,7 @@ Newt is a free, web based, open source viewer and editor for pathways in Systems
     biotools:primaryContact "Bedford T" .
 
 <https://bio.tools/nextgen_utility_scripts> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:description "A collection of links to scripts available for working with data generated by new sequencing technologies." ;
@@ -331457,7 +346111,7 @@ Newt is a free, web based, open source viewer and editor for pathways in Systems
     biotools:primaryContact "Electronic helpdesk" .
 
 <https://bio.tools/nextgene> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0622,
@@ -331481,7 +346135,7 @@ A desktop application for analyzing next generation sequencing data. It does not
         "Technical Service" .
 
 <https://bio.tools/nextgenmap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0102,
@@ -331500,8 +346154,35 @@ A desktop application for analyzing next generation sequencing data. It does not
     sc:url "http://cibiv.github.io/NextGenMap/" ;
     biotools:primaryContact "Fritz J. Sedlazeck" .
 
+<https://bio.tools/nextneopi> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_3495" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "RNA sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0769,
+        edam:topic_3170,
+        edam:topic_3316,
+        edam:topic_3673,
+        edam:topic_3930 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAB759>,
+        "pmcid:PMC8796378",
+        "pubmed:34788790" ;
+    sc:description "A comprehensive pipeline for computational neoantigen prediction." ;
+    sc:featureList edam:operation_0252,
+        edam:operation_3227,
+        edam:operation_3695 ;
+    sc:isAccessibleForFree true ;
+    sc:license "BSD-3-Clause-Clear" ;
+    sc:name "nextNEOpi" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/icbi-lab/nextNEOpi" .
+
 <https://bio.tools/nextorch> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3314,
@@ -331524,7 +346205,7 @@ A desktop application for analyzing next generation sequencing data. It does not
     sc:url "https://github.com/VlachosGroup/nextorch" .
 
 <https://bio.tools/nextprot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0121,
@@ -331557,7 +346238,7 @@ A desktop application for analyzing next generation sequencing data. It does not
     biotools:primaryContact "Support" .
 
 <https://bio.tools/nextprot-cli> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library",
         "SPARQL endpoint",
@@ -331577,7 +346258,7 @@ A desktop application for analyzing next generation sequencing data. It does not
     sc:url "https://www.npmjs.com/package/nextprot-cli" .
 
 <https://bio.tools/nextsv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3168,
@@ -331595,7 +346276,7 @@ A desktop application for analyzing next generation sequencing data. It does not
     biotools:primaryContact "Kai Wang" .
 
 <https://bio.tools/nexuslims> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0607,
         edam:topic_0611,
@@ -331614,20 +346295,41 @@ A desktop application for analyzing next generation sequencing data. It does not
     sc:url "http://www.informatics.abbott/us/en/offerings/lims" ;
     biotools:primaryContact <https://orcid.org/0000-0002-5185-4503> .
 
+<https://bio.tools/nezzle> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0091,
+        edam:topic_0102,
+        edam:topic_0602,
+        edam:topic_3382 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC324>,
+        "pmcid:PMC9191205",
+        "pubmed:35552638" ;
+    sc:description "An interactive and programmable visualization of biological networks in Python." ;
+    sc:featureList edam:operation_2429,
+        edam:operation_3925 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "Nezzle" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/dwgoon/nezzle" .
+
 <https://bio.tools/nf-core-atacseq> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3494" ;
-            sc:name "DNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3494" ] ;
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "DNA sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1383" ;
-            sc:name "Nucleic acid sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_1383" ],
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_3006" ;
+            sc:name "Annotation track" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1383" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Nucleic acid sequence alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0097,
@@ -331663,14 +346365,14 @@ A desktop application for analyzing next generation sequencing data. It does not
 
 <https://bio.tools/nf-core-cageseq> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3494" ;
-            sc:name "DNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3494" ] ;
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "DNA sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1383" ;
-            sc:name "Nucleic acid sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_1383" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1383" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Nucleic acid sequence alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -331703,18 +346405,18 @@ A desktop application for analyzing next generation sequencing data. It does not
 
 <https://bio.tools/nf-core-chipseq> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3494" ;
-            sc:name "DNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3494" ] ;
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "DNA sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2012" ;
-            sc:name "Sequence coordinates" ;
-            sc:sameAs "http://edamontology.org/data_2012" ],
+            sc:additionalType "http://edamontology.org/data_2012" ;
+            sc:encodingFormat "http://edamontology.org/format_3006" ;
+            sc:name "Sequence coordinates" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1383" ;
-            sc:name "Nucleic acid sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_1383" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1383" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Nucleic acid sequence alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0622,
@@ -331750,18 +346452,18 @@ A desktop application for analyzing next generation sequencing data. It does not
 
 <https://bio.tools/nf-core-eager> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3494" ;
-            sc:name "DNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3494" ] ;
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "DNA sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0858" ;
-            sc:name "Sequence signature matches" ;
-            sc:sameAs "http://edamontology.org/data_0858" ],
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "DNA sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3494" ;
-            sc:name "DNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3494" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0858" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Sequence signature matches" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0654,
@@ -331799,10 +346501,10 @@ A desktop application for analyzing next generation sequencing data. It does not
 
 <https://bio.tools/nf-core-hic> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3494" ;
-            sc:name "DNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3494" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "DNA sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0622,
@@ -331832,14 +346534,14 @@ A desktop application for analyzing next generation sequencing data. It does not
 
 <https://bio.tools/nf-core-methylseq> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3494" ;
-            sc:name "DNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3494" ] ;
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "DNA sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1383" ;
-            sc:name "Nucleic acid sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_1383" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1383" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Nucleic acid sequence alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0622,
@@ -331877,18 +346579,18 @@ A desktop application for analyzing next generation sequencing data. It does not
 
 <https://bio.tools/nf-core-rnaseq> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3494" ;
-            sc:name "DNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3494" ] ;
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "DNA sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3134" ;
-            sc:name "Gene transcript report" ;
-            sc:sameAs "http://edamontology.org/data_3134" ],
+            sc:additionalType "http://edamontology.org/data_1383" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Nucleic acid sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1383" ;
-            sc:name "Nucleic acid sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_1383" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3134" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Gene transcript report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0622,
@@ -331930,18 +346632,18 @@ A desktop application for analyzing next generation sequencing data. It does not
 
 <https://bio.tools/nf-core-sarek> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3497" ;
-            sc:name "DNA sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_3497" ],
+            sc:additionalType "http://edamontology.org/data_3497" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "DNA sequence (raw)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3494" ;
-            sc:name "DNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3494" ] ;
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "DNA sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence variations" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0622,
@@ -331974,29 +346676,32 @@ It's built using Nextflow, a workflow tool to run tasks across multiple compute
         "2.5.2",
         "2.6",
         "2.6.1",
-        "2.7" ;
+        "2.7",
+        "2.7.1",
+        "2.7.2",
+        "3.0" ;
     sc:url "https://nf-co.re/sarek" ;
     biotools:primaryContact <https://orcid.org/0000-0003-2827-9261>,
         "Szilvester Juhos" .
 
 <https://bio.tools/nf-core-smrnaseq> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3494" ;
-            sc:name "DNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3494" ] ;
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "DNA sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1383" ;
-            sc:name "Nucleic acid sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_1383" ],
+            sc:additionalType "http://edamontology.org/data_1383" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Nucleic acid sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3495" ;
-            sc:name "RNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3495" ],
+            sc:additionalType "http://edamontology.org/data_3495" ;
+            sc:encodingFormat "http://edamontology.org/format_3864" ;
+            sc:name "RNA sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3495" ;
-            sc:name "RNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3495" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3495" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "RNA sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0622,
@@ -332032,26 +346737,26 @@ It's built using Nextflow, a workflow tool to run tasks across multiple compute
 
 <https://bio.tools/nf-core-viralrecon> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3494" ;
-            sc:name "DNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3494" ] ;
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "DNA sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1383" ;
-            sc:name "Nucleic acid sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_1383" ],
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence variations" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ],
+            sc:additionalType "http://edamontology.org/data_3914" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Quality control report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3914" ;
-            sc:name "Quality control report" ;
-            sc:sameAs "http://edamontology.org/data_3914" ],
+            sc:additionalType "http://edamontology.org/data_1383" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Nucleic acid sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0925" ;
-            sc:name "Sequence assembly" ;
-            sc:sameAs "http://edamontology.org/data_0925" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0925" ;
+            sc:encodingFormat "http://edamontology.org/format_3975" ;
+            sc:name "Sequence assembly" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0102,
@@ -332063,7 +346768,6 @@ It's built using Nextflow, a workflow tool to run tasks across multiple compute
         edam:topic_3796 ;
     sc:author <https://orcid.org/0000-0002-0740-6324>,
         <https://orcid.org/0000-0002-2245-210X>,
-        <https://orcid.org/0000-0002-4403-1840>,
         <https://orcid.org/0000-0003-2707-7940> ;
     sc:citation <https://doi.org/10.1038/s41587-020-0439-x>,
         "pubmed:32055031" ;
@@ -332082,18 +346786,24 @@ It's built using Nextflow, a workflow tool to run tasks across multiple compute
         <https://nf-co.re/viralrecon>,
         <https://nf-co.re/viralrecon/usage> ;
     sc:softwareVersion "1.0.0",
-        "1.1.0" ;
+        "1.1.0",
+        "2.0",
+        "2.1",
+        "2.2",
+        "2.3",
+        "2.3.1",
+        "2.4",
+        "2.4.1" ;
     sc:url "https://nf-co.re/viralrecon" ;
     biotools:primaryContact <https://orcid.org/0000-0002-0740-6324>,
         <https://orcid.org/0000-0002-1541-042X>,
         <https://orcid.org/0000-0002-2245-210X>,
-        <https://orcid.org/0000-0002-4403-1840>,
         <https://orcid.org/0000-0003-2707-7940>,
         <https://orcid.org/0000-0003-2827-9261>,
         <https://orcid.org/0000-0003-4101-2502> .
 
 <https://bio.tools/nf-core_mag> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0769,
@@ -332117,14 +346827,14 @@ It's built using Nextflow, a workflow tool to run tasks across multiple compute
 
 <https://bio.tools/nf-rnaseqcount> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ] ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Expression data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3112" ;
-            sc:name "Gene expression matrix" ;
-            sc:sameAs "http://edamontology.org/data_3112" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3112" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Gene expression matrix" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -332145,14 +346855,14 @@ It's built using Nextflow, a workflow tool to run tasks across multiple compute
 
 <https://bio.tools/nf-rnaseqmetagen> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ] ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Expression data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3028" ;
-            sc:name "Taxonomy" ;
-            sc:sameAs "http://edamontology.org/data_3028" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3028" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Taxonomy" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_3174,
@@ -332172,7 +346882,7 @@ It's built using Nextflow, a workflow tool to run tasks across multiple compute
     biotools:primaryContact <https://orcid.org/0000-0001-8280-8940> .
 
 <https://bio.tools/nffinder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203 ;
     sc:citation <https://doi.org/10.1093/NAR/GKV445>,
@@ -332190,7 +346900,7 @@ It's built using Nextflow, a workflow tool to run tasks across multiple compute
     biotools:primaryContact "A. Pascual-Montano" .
 
 <https://bio.tools/nfnetfu> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0769,
@@ -332213,7 +346923,7 @@ It's built using Nextflow, a workflow tool to run tasks across multiple compute
     sc:url "https://github.com/VartikaBisht6197/NFnetFu" .
 
 <https://bio.tools/nfp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0610,
@@ -332234,7 +346944,7 @@ It's built using Nextflow, a workflow tool to run tasks across multiple compute
     biotools:primaryContact "Yang Cao" .
 
 <https://bio.tools/ng-circos> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -332252,7 +346962,7 @@ Circos plots are widely used to display multi-dimensional next-generation genomi
     sc:url "https://wlcb.oit.uci.edu/NG-Circos" .
 
 <https://bio.tools/ng-star> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0194,
@@ -332270,7 +346980,7 @@ Circos plots are widely used to display multi-dimensional next-generation genomi
     sc:url "https://ngstar.canada.ca/" .
 
 <https://bio.tools/ngauge> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3382,
@@ -332288,14 +346998,14 @@ Circos plots are widely used to display multi-dimensional next-generation genomi
 
 <https://bio.tools/ngl_viewer> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0883" ;
-            sc:name "Structure" ;
-            sc:sameAs "http://edamontology.org/data_0883" ] ;
+            sc:additionalType "http://edamontology.org/data_0883" ;
+            sc:encodingFormat "http://edamontology.org/format_1477" ;
+            sc:name "Structure" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1710" ;
-            sc:name "Structure image" ;
-            sc:sameAs "http://edamontology.org/data_1710" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1710" ;
+            sc:encodingFormat "http://edamontology.org/format_3603" ;
+            sc:name "Structure image" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library",
         "Web application" ;
@@ -332316,7 +347026,7 @@ Circos plots are widely used to display multi-dimensional next-generation genomi
     biotools:primaryContact "Alexander Rose" .
 
 <https://bio.tools/ngloc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0621 ;
@@ -332337,7 +347047,7 @@ Circos plots are widely used to display multi-dimensional next-generation genomi
         "Babu Guda" .
 
 <https://bio.tools/nglview> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0092,
@@ -332356,7 +347066,7 @@ Circos plots are widely used to display multi-dimensional next-generation genomi
     biotools:primaryContact "Alexander S Rose" .
 
 <https://bio.tools/ngly1_browser> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0121,
@@ -332378,7 +347088,7 @@ Circos plots are widely used to display multi-dimensional next-generation genomi
     sc:url "https://apps.embl.de/ngly1browser" .
 
 <https://bio.tools/nglyalign> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Library" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -332403,18 +347113,18 @@ NGlyAlignApp_v1.exe -MCRInstaller.exe Note: if end users are unable to download
 
 <https://bio.tools/ngmlr> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2093" ;
-            sc:name "Data reference" ;
-            sc:sameAs "http://edamontology.org/data_2093" ],
+            sc:additionalType "http://edamontology.org/data_3497" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "DNA sequence (raw)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3497" ;
-            sc:name "DNA sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_3497" ] ;
+            sc:additionalType "http://edamontology.org/data_2093" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Data reference" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1383" ;
-            sc:name "Sequence alignment (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1383" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1383" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
+            sc:name "Sequence alignment (nucleic acid)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3168,
@@ -332435,7 +347145,7 @@ NGlyAlignApp_v1.exe -MCRInstaller.exe Note: if end users are unable to download
     biotools:primaryContact "Philipp Rescheneder" .
 
 <https://bio.tools/ngome-lite> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -332456,7 +347166,7 @@ Prediction of spontaneous asparagine deamidation at a proteomic scale.""" ;
     sc:url "https://ngome.proteinphysiologylab.org" .
 
 <https://bio.tools/ngphubinh> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0749,
@@ -332478,7 +347188,7 @@ We collected all the proteins from UniProt with GO molecular function annotation
     sc:url "https://github.com/ngphubinh/adaptors" .
 
 <https://bio.tools/ngs-integrator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3168,
@@ -332501,7 +347211,7 @@ NGS-Integrator is a Java-based commandline tool that integrates multiple genome-
     sc:url "https://hpcwebapps.cit.nih.gov/ESBL/NGS-Integrator/" .
 
 <https://bio.tools/ngs-pipeline> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_3173,
         edam:topic_3175,
@@ -332519,7 +347229,7 @@ NGS-Integrator is a Java-based commandline tool that integrates multiple genome-
     sc:url "http://code.google.com/p/ngs-pipeline/" .
 
 <https://bio.tools/ngs-primerplex> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Script" ;
     sc:applicationSubCategory edam:topic_0632,
@@ -332545,7 +347255,7 @@ NGS-PrimerPlex can be run as a Docker image. In this way you only need to instal
     sc:url "https://github.com/aakechin/NGS-PrimerPlex/" .
 
 <https://bio.tools/ngs-qc_generator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3169,
         edam:topic_3572 ;
@@ -332561,7 +347271,7 @@ NGS-PrimerPlex can be run as a Docker image. In this way you only need to instal
     sc:url "http://www.ngs-qc.org/" .
 
 <https://bio.tools/ngs-snp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3120 ;
@@ -332578,7 +347288,7 @@ NGS-PrimerPlex can be run as a Docker image. In this way you only need to instal
     sc:url "https://sites.ualberta.ca/~stothard/downloads/NGS-SNP/" .
 
 <https://bio.tools/ngs-trex> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3168,
@@ -332598,7 +347308,7 @@ NGS-PrimerPlex can be run as a Docker image. In this way you only need to instal
     biotools:primaryContact "Flavio Mignone" .
 
 <https://bio.tools/ngsRelateV2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3056,
@@ -332622,7 +347332,7 @@ NGS-PrimerPlex can be run as a Docker image. In this way you only need to instal
         "Ida Moltke" .
 
 <https://bio.tools/ngsReports> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3168,
@@ -332637,7 +347347,7 @@ The shiny app that accompanies the ngsReports R package""" ;
     sc:url "https://github.com/UofABioinformaticsHub/shinyNgsreports" .
 
 <https://bio.tools/ngs_backbone> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622 ;
     sc:citation <https://doi.org/10.1186/1471-2164-12-285> ;
@@ -332650,25 +347360,20 @@ The shiny app that accompanies the ngsReports R package""" ;
     sc:url "http://bioinf.comav.upv.es/ngs_backbone/index.html" ;
     biotools:primaryContact "Ngs backbone team" .
 
-<https://bio.tools/ngs_for_crispr_knockout_validation> a sc:SoftwareApplication ;
-    sc:description "CD Genomics provides CRISPR-Cas9 knockout validation and potential off-target detection in a high-throughput and cost-effective manner by harnessing advanced next generation sequencing (NGS). Our team members have experience in both genome editing and NGS, enabling extensive support to your research. CD Genomics is able to help you to detect the potential off-target effects via targets enrichment and deep sequencing at fairly inexpensive prices." ;
-    sc:name "NGS for CRISPR knockout validation" ;
-    sc:url "https://www.cd-genomics.com/crispr-mutation-sequencing.html" .
-
 <https://bio.tools/ngs_simulation> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Image" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0607,
         edam:topic_3168,
@@ -332689,7 +347394,7 @@ The shiny app that accompanies the ngsReports R package""" ;
     biotools:primaryContact "Galaxy Support Team" .
 
 <https://bio.tools/ngscat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0622,
@@ -332707,7 +347412,7 @@ The shiny app that accompanies the ngsReports R package""" ;
     sc:url "http://ngscat.clinbioinfosspa.es/ngscat" .
 
 <https://bio.tools/ngscheckmate> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3168,
         edam:topic_3170,
@@ -332728,7 +347433,7 @@ The shiny app that accompanies the ngsReports R package""" ;
     biotools:primaryContact "Peter J. Parkcorresponding author3,5" .
 
 <https://bio.tools/ngscloud> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0659,
@@ -332745,7 +347450,7 @@ The shiny app that accompanies the ngsReports R package""" ;
     biotools:primaryContact "Unai López de Heredia" .
 
 <https://bio.tools/ngscomposer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0769,
@@ -332764,7 +347469,7 @@ The shiny app that accompanies the ngsReports R package""" ;
     biotools:primaryContact "Bode A Olukolu" .
 
 <https://bio.tools/ngscopy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -332783,7 +347488,7 @@ The shiny app that accompanies the ngsReports R package""" ;
     biotools:primaryContact "Xiaobei Zhao" .
 
 <https://bio.tools/ngseasy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0769,
@@ -332804,7 +347509,7 @@ The shiny app that accompanies the ngsReports R package""" ;
         "Dr Stephen J Newhouse" .
 
 <https://bio.tools/ngsmethdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_0749,
@@ -332824,8 +347529,25 @@ The shiny app that accompanies the ngsReports R package""" ;
     sc:url "http://bioinfo2.ugr.es/NGSmethDB/gbrowse/" ;
     biotools:primaryContact "Michael Hackenberg" .
 
+<https://bio.tools/ngsml> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Desktop application" ;
+    sc:applicationSubCategory edam:topic_0769,
+        edam:topic_3168,
+        edam:topic_3307 ;
+    sc:citation <https://doi.org/10.1109/TCBB.2022.3144170>,
+        "pubmed:35085089" ;
+    sc:description "A medium for the representation and exchange of NGS data." ;
+    sc:featureList edam:operation_3096 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "NGSML" ;
+    sc:operatingSystem "Linux",
+        "Windows" ;
+    sc:url "http://www.sysbio.org.cn/NGSML" .
+
 <https://bio.tools/ngsoptwin> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3168 ;
@@ -332841,7 +347563,7 @@ The shiny app that accompanies the ngsReports R package""" ;
     biotools:primaryContact "Arief Gusnanto" .
 
 <https://bio.tools/ngsrelate> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0654,
@@ -332857,7 +347579,7 @@ The shiny app that accompanies the ngsReports R package""" ;
     biotools:primaryContact "Ida Moltke" .
 
 <https://bio.tools/ngsremix> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2269,
@@ -332875,7 +347597,7 @@ The method is implemented in an R package and as a commandline based C++ program
     sc:url "https://github.com/KHanghoj/NGSremix" .
 
 <https://bio.tools/ngsrich> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3053,
@@ -332891,7 +347613,7 @@ The method is implemented in an R package and as a commandline based C++ program
     biotools:primaryContact "Dr. Peter Frommolt" .
 
 <https://bio.tools/ngstools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3056,
         edam:topic_3168 ;
@@ -332905,7 +347627,7 @@ The method is implemented in an R package and as a commandline based C++ program
     biotools:primaryContact "Matteo Fumagalli" .
 
 <https://bio.tools/ngsutils> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3308 ;
@@ -332926,7 +347648,7 @@ The method is implemented in an R package and as a commandline based C++ program
         "Yunlong Liu (PI)" .
 
 <https://bio.tools/ngsview> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0622 ;
     sc:citation "pubmed:19855106" ;
@@ -332939,15 +347661,37 @@ The method is implemented in an R package and as a commandline based C++ program
     sc:url "http://ngsview.sourceforge.net/" ;
     biotools:primaryContact "Erik Arner" .
 
+<https://bio.tools/nhccdb> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0622,
+        edam:topic_0632,
+        edam:topic_0749,
+        edam:topic_3068,
+        edam:topic_3673 ;
+    sc:citation <https://doi.org/10.3390/PLANTS11081005>,
+        "pmcid:PMC9029197",
+        "pubmed:35448733" ;
+    sc:description "An Open-Access Platform for the Genomics of Brassica campestris (syn. Brassica rapa) ssp. chinensis." ;
+    sc:featureList edam:operation_0308,
+        edam:operation_2421,
+        edam:operation_3216,
+        edam:operation_3431 ;
+    sc:isAccessibleForFree true ;
+    sc:name "NHCCDB" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://tbir.njau.edu.cn/NhCCDbHubs/index.jsp" .
+
 <https://bio.tools/nhgri_micorarray_project> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0204,
         edam:topic_0602,
         edam:topic_2640,
         edam:topic_3512 ;
-    sc:citation "pubmed:14612509" ;
     sc:description "Protocols, analysis and resources; BLAST against the 15K set cDNA library clones (from 15,000 human UniGene clusters; clones are available)." ;
     sc:featureList edam:operation_0313,
         edam:operation_0314,
@@ -332959,30 +347703,8 @@ The method is implemented in an R package and as a commandline based C++ program
     biotools:primaryContact "Javed Khan",
         "Paul S. Meltzer" .
 
-<https://bio.tools/nhiss> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0634,
-        edam:topic_3335,
-        edam:topic_3489 ;
-    sc:citation <https://doi.org/10.4178/EPIH.E2019040>,
-        "pmcid:PMC6928464",
-        "pubmed:31679329" ;
-    sc:description """Family tree database of the National Health Information Database in Korea.
-
-h-well 국민건강보험 National health insurance sharing service.
-
-안녕하세요, 국민건강보험공단 자료공유서비스(NHISS) 입니다.
-
-건강보험자료 공유서비스 근거중심의 보건의료 정책 및 학술연구 지원을 선도합니다.
-
-[맞춤형DB] [맞춤형 DB] 데이터셋 홈페이지 추출 ... 20-01-08.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'NHID', 'DB'""" ;
-    sc:featureList edam:operation_0483 ;
-    sc:name "nhiss" ;
-    sc:url "http://nhiss.nhis.or.kr" .
-
 <https://bio.tools/nhkcr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0121,
@@ -333004,11 +347726,10 @@ h-well 국민건강보험 National health insurance sharing service.
         "Zhen Chen" .
 
 <https://bio.tools/nhlapred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0804,
-        edam:topic_2830,
         edam:topic_3510 ;
     sc:citation "pubmed:17426378" ;
     sc:description "Allows to predict binding peptide for 67 MHC Class I alleles. This also allow to predict the proteasome cleavage site and binding peptide that have cleavage site at C terminus (potential T cell epitopes)." ;
@@ -333019,11 +347740,11 @@ h-well 국민건강보험 National health insurance sharing service.
         "Mac",
         "Windows" ;
     sc:softwareHelp <http://crdd.osdd.net/raghava/nhlapred/help.html> ;
-    sc:url "http://www.imtech.res.in/raghava/nhlapred/" ;
+    sc:url "http://webs.iiitd.edu.in/raghava/nhlapred/" ;
     biotools:primaryContact "Dr G P S Raghava" .
 
 <https://bio.tools/nhp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3304,
         edam:topic_3384,
@@ -333042,7 +347763,7 @@ This is a pre-release of skull-stripped brian masks of T1w images for 136 macaqu
     sc:url "https://github.com/HumanBrainED/NHP-BrainExtraction" .
 
 <https://bio.tools/nhphyml> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3293,
@@ -333058,7 +347779,7 @@ This is a pre-release of skull-stripped brian masks of T1w images for 136 macaqu
     biotools:primaryContact "Bastien Boussau" .
 
 <https://bio.tools/niacs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0602,
@@ -333075,7 +347796,7 @@ This is a pre-release of skull-stripped brian masks of T1w images for 136 macaqu
     biotools:primaryContact "Nigel J. Burroughs" .
 
 <https://bio.tools/nias-server> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_2814,
@@ -333091,7 +347812,7 @@ This is a pre-release of skull-stripped brian masks of T1w images for 136 macaqu
     sc:url "http://sbcb.inf.ufrgs.br/npas/" .
 
 <https://bio.tools/niasgbdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0634,
@@ -333110,7 +347831,7 @@ This is a pre-release of skull-stripped brian masks of T1w images for 136 macaqu
     biotools:primaryContact "Contact Form" .
 
 <https://bio.tools/nibna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0602,
@@ -333130,14 +347851,13 @@ This is a pre-release of skull-stripped brian masks of T1w images for 136 macaqu
 
 <https://bio.tools/nibr_2d-page> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1096" ;
-            sc:name "Sequence accession (protein)" ;
-            sc:sameAs "http://edamontology.org/data_1096" ] ;
+            sc:additionalType "http://edamontology.org/data_1096" ;
+            sc:name "Sequence accession (protein)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2531" ;
-            sc:name "Experiment report" ;
-            sc:sameAs "http://edamontology.org/data_2531" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2531" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Experiment report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0121 ;
     sc:citation <https://doi.org/10.1016/j.jprot.2008.02.005>,
@@ -333152,8 +347872,28 @@ This is a pre-release of skull-stripped brian masks of T1w images for 136 macaqu
     sc:url "http://www.expasy.org/world-2dpage/" ;
     biotools:primaryContact <http://orcid.org/0000-0002-7341-1551> .
 
+<https://bio.tools/niches> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_2229,
+        edam:topic_3170,
+        edam:topic_3308 ;
+    sc:citation <https://doi.org/10.1101/2022.01.23.477401> ;
+    sc:description "Comprehensive visualization of cell-cell interactions in single-cell and spatial transcriptomics with NICHES." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_0337,
+        edam:operation_3432 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "NICHES" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://msraredon.github.io/NICHES/> ;
+    sc:url "http://github.com/msraredon/NICHES" .
+
 <https://bio.tools/nidm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0634,
@@ -333172,7 +347912,7 @@ This is a pre-release of skull-stripped brian masks of T1w images for 136 macaqu
     biotools:primaryContact <https://orcid.org/0000-0002-0188-1394> .
 
 <https://bio.tools/nieluter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0804,
@@ -333189,7 +347929,7 @@ This is a pre-release of skull-stripped brian masks of T1w images for 136 macaqu
     sc:url "http://immunet.cn/nie/cgi-bin/nieluter.pl" .
 
 <https://bio.tools/nif_registry_search> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API" ;
     sc:applicationSubCategory edam:topic_3071,
         edam:topic_3473 ;
@@ -333203,7 +347943,7 @@ This is a pre-release of skull-stripped brian masks of T1w images for 136 macaqu
     sc:url "http://nif-services.neuinfo.org/servicesv1/application.wadl" .
 
 <https://bio.tools/nifa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -333219,8 +347959,34 @@ The main function is NIFA() and there is a simulated example under the directory
     sc:name "NIFA" ;
     sc:url "https://github.com/wgmao/NIFA" .
 
+<https://bio.tools/nifthool> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:name "Sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0084,
+        edam:topic_0154,
+        edam:topic_0605,
+        edam:topic_0821,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.12688/F1000RESEARCH.107925.1>,
+        "pmcid:PMC8956849",
+        "pubmed:35360826" ;
+    sc:description "An informatics program for identification of NifH proteins using deep neural networks." ;
+    sc:featureList edam:operation_3472,
+        edam:operation_3767,
+        edam:operation_3937 ;
+    sc:isAccessibleForFree true ;
+    sc:license "CC0-1.0" ;
+    sc:name "NIFtHool" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://nifthool.anvil.app/" .
+
 <https://bio.tools/niftyfit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3334,
         edam:topic_3444 ;
@@ -333239,7 +348005,7 @@ The main function is NIFA() and there is a simulated example under the directory
     biotools:primaryContact <http://orcid.org/0000-0001-7667-3947> .
 
 <https://bio.tools/niftypet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3300,
         edam:topic_3334,
@@ -333257,7 +348023,7 @@ The main function is NIFA() and there is a simulated example under the directory
     biotools:primaryContact "Pawel J. Markiewicz" .
 
 <https://bio.tools/niftytorch> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_3384,
         edam:topic_3474 ;
@@ -333270,7 +348036,7 @@ The main function is NIFA() and there is a simulated example under the directory
     biotools:primaryContact "Farshid Sepehrband" .
 
 <https://bio.tools/niid-net> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3382 ;
@@ -333283,8 +348049,28 @@ The main function is NIFA() and there is a simulated example under the directory
     sc:name "NIID-Net" ;
     sc:url "https://github.com/zju3dv/NIID-Net" .
 
+<https://bio.tools/nimaa> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0769,
+        edam:topic_3473,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1101/2022.01.13.475835> ;
+    sc:description "An R/CRAN package to accomplish NomInal data Mining Analysis." ;
+    sc:featureList edam:operation_3432,
+        edam:operation_3557,
+        edam:operation_3927 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "NIMAA" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://cran.r-project.org/web/packages/NIMAA/NIMAA.pdf> ;
+    sc:url "https://CRAN.R-project.org/package=NIMAA" .
+
 <https://bio.tools/nimbus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0749,
@@ -333302,7 +348088,7 @@ Identifying highly mutated regions is a key way that scientists can use on popul
     sc:url "http://github.gersteinlab.org/nimbus" .
 
 <https://bio.tools/nimce> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -333319,14 +348105,13 @@ NIMCE is a network inference method based on information-theoretic to reconstruc
 
 <https://bio.tools/nimefi> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Gene expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ] ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:name "Gene expression data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Pathway or network" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0602 ;
     sc:citation <https://doi.org/10.1371/journal.pone.0092709> ;
@@ -333342,7 +348127,7 @@ NIMCE is a network inference method based on information-theoretic to reconstruc
     sc:url "http://bioinformatics.intec.ugent.be/nimefi/nimefi/index.html" .
 
 <https://bio.tools/ninimhmda> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3474,
@@ -333355,8 +348140,22 @@ NIMCE is a network inference method based on information-theoretic to reconstruc
     sc:name "NinimHMDA" ;
     sc:url "https://github.com/yuanjing-ma/NinimHMDA" .
 
+<https://bio.tools/ninja> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0084 ;
+    sc:description "Nearly Infinite Neighbor Joining Application" ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "ninja" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://wheelerlab.org/NINJA/> ;
+    sc:url "https://github.com/TravisWheelerLab/NINJA" .
+
 <https://bio.tools/nip_nsc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0166,
@@ -333372,7 +348171,7 @@ NIMCE is a network inference method based on information-theoretic to reconstruc
     biotools:primaryContact "Debnath Pal" .
 
 <https://bio.tools/nipredict> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2229,
@@ -333390,7 +348189,7 @@ NIMCE is a network inference method based on information-theoretic to reconstruc
         "Jianjun Hu" .
 
 <https://bio.tools/niptmer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0634,
@@ -333404,8 +348203,30 @@ NIMCE is a network inference method based on information-theoretic to reconstruc
     sc:url "http://bioinfo.ut.ee/NIPTMer/" ;
     biotools:primaryContact "Lauris Kaplinski" .
 
+<https://bio.tools/niqki> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0622,
+        edam:topic_3070 ;
+    sc:citation <https://doi.org/10.1101/2021.11.04.467355> ;
+    sc:description "Toward optimal fingerprint indexing for large scale genomics." ;
+    sc:featureList edam:operation_0224,
+        edam:operation_1812,
+        edam:operation_3211 ;
+    sc:isAccessibleForFree true ;
+    sc:license "AGPL-3.0" ;
+    sc:name "NIQKI" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/Malfoy/NIQKI" .
+
 <https://bio.tools/nir> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0602,
@@ -333422,7 +348243,7 @@ NIMCE is a network inference method based on information-theoretic to reconstruc
     biotools:primaryContact "Diego di Bernardo" .
 
 <https://bio.tools/njplot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0084,
@@ -333444,8 +348265,28 @@ NIMCE is a network inference method based on information-theoretic to reconstruc
     sc:url "http://pbil.univ-lyon1.fr/software/njplot.html" ;
     biotools:primaryContact "Guy Perriere" .
 
+<https://bio.tools/njst-j> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0084,
+        edam:topic_0194,
+        edam:topic_2269 ;
+    sc:citation <https://doi.org/10.1089/cmb.2021.0543>,
+        "pubmed:35196115" ;
+    sc:description "Scalable Species Tree Inference with External Constraints." ;
+    sc:featureList edam:operation_0546,
+        edam:operation_0553,
+        edam:operation_3478 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-2.0" ;
+    sc:name "NJst-J" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/RuneBlaze/FASTRAL-constrained" .
+
 <https://bio.tools/nl4dv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0218,
@@ -333463,7 +348304,7 @@ NL4DV is a Python toolkit that takes a natural language (NL) query about a given
     sc:url "https://nl4dv.github.io/nl4dv/" .
 
 <https://bio.tools/nldmseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3168,
@@ -333480,7 +348321,7 @@ NL4DV is a Python toolkit that takes a natural language (NL) query about a given
     biotools:primaryContact "Xuejun Liu" .
 
 <https://bio.tools/nlme-growth-models-param-estimation> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269 ;
     sc:description "MATLAB script for estimating parameters in NLME growth models" ;
@@ -333494,7 +348335,7 @@ NL4DV is a Python toolkit that takes a natural language (NL) query about a given
     biotools:primaryContact "Mark Damen" .
 
 <https://bio.tools/nloed> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_2259,
@@ -333514,7 +348355,7 @@ NL4DV is a Python toolkit that takes a natural language (NL) query about a given
     sc:url "https://pypi.org/project/nloed/" .
 
 <https://bio.tools/nlp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0218,
         edam:topic_3384,
@@ -333528,8 +348369,26 @@ This application predicts likelihood of home discharge following craniotomy for
     sc:name "NLP" ;
     sc:url "http://nlp-home.insds.org" .
 
+<https://bio.tools/nlp_natural_language> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0218,
+        edam:topic_3416,
+        edam:topic_3421,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1097/CORR.0000000000002200>,
+        "pubmed:35412473" ;
+    sc:description "Natural Language Processing Algorithm for Detection of Incidental Durotomy in Operative Notes." ;
+    sc:featureList edam:operation_2428 ;
+    sc:isAccessibleForFree true ;
+    sc:name "NLP" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://sorg-apps.shinyapps.io/nlp_incidental_durotomy/" .
+
 <https://bio.tools/nlpexplorer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0218,
         edam:topic_3077,
@@ -333545,7 +348404,7 @@ Understanding the current research trends, problems, and their innovative soluti
     sc:url "http://nlpexplorer.org" .
 
 <https://bio.tools/nlprot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0089,
@@ -333562,7 +348421,7 @@ Understanding the current research trends, problems, and their innovative soluti
     biotools:primaryContact "Sven Mika" .
 
 <https://bio.tools/nlr-parser> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0634,
@@ -333580,7 +348439,7 @@ Understanding the current research trends, problems, and their innovative soluti
     biotools:primaryContact "Steuernagel B" .
 
 <https://bio.tools/nlstradamus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0602,
@@ -333601,7 +348460,7 @@ Understanding the current research trends, problems, and their innovative soluti
     biotools:primaryContact "Alan M Moses" .
 
 <https://bio.tools/nlt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_3382 ;
@@ -333613,8 +348472,29 @@ PyTorch implementations of the paper: "Neuron Linear Transformation: Modeling th
     sc:name "NLT" ;
     sc:url "https://github.com/taohan10200/NLT" .
 
+<https://bio.tools/nm-nano> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0621,
+        edam:topic_0659,
+        edam:topic_3170,
+        edam:topic_3474,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.1101/2022.01.03.473214> ;
+    sc:description "Predicting 2’-O-Methylation (Nm) Sites in Nanopore RNA Sequencing Data." ;
+    sc:featureList edam:operation_2436,
+        edam:operation_3185,
+        edam:operation_3435 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "Nm-Nano" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/Janga-Lab/Nm-Nano" .
+
 <https://bio.tools/nmd_classifier> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_3512 ;
@@ -333627,8 +348507,29 @@ PyTorch implementations of the paper: "Neuron Linear Transformation: Modeling th
     sc:url "https://sourceforge.net/projects/transcriptome-analysis/" ;
     biotools:primaryContact "Feng-Chi Chen" .
 
+<https://bio.tools/nmf-dr> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0208,
+        edam:topic_0634,
+        edam:topic_3336,
+        edam:topic_3374,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAB826>,
+        "pmcid:PMC8825773",
+        "pubmed:34875000" ;
+    sc:description "A Network-Based Drug Repurposing Method Via Non-Negative Matrix Factorization." ;
+    sc:featureList edam:operation_3927 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "NMF-DR" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/sshaghayeghs/NMF-DR" .
+
 <https://bio.tools/nmf-mgpu> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3071,
@@ -333643,7 +348544,7 @@ PyTorch implementations of the paper: "Neuron Linear Transformation: Modeling th
     biotools:primaryContact "Alberto Pascual-Montano" .
 
 <https://bio.tools/nmff> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3345,
         edam:topic_3382,
@@ -333659,7 +348560,7 @@ PyTorch implementations of the paper: "Neuron Linear Transformation: Modeling th
     biotools:primaryContact "Charles Brooks" .
 
 <https://bio.tools/nmfna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -333677,7 +348578,7 @@ we have provided demo data and Pancreatic Cancer data for NMFNA, if you want to
     sc:url "https://github.com/CDMB-lab/NMFNA" .
 
 <https://bio.tools/nmj-analyser> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0634,
@@ -333696,22 +348597,20 @@ NMJ-Analyser requires NMJs to be separated by at least 20um. Images which contai
 
 <https://bio.tools/nmpdr> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2737" ;
-            sc:name "FIG ID" ;
-            sc:sameAs "http://edamontology.org/data_2737" ],
+            sc:additionalType "http://edamontology.org/data_1179" ;
+            sc:name "NCBI taxonomy ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1179" ;
-            sc:name "NCBI taxonomy ID" ;
-            sc:sameAs "http://edamontology.org/data_1179" ] ;
+            sc:additionalType "http://edamontology.org/data_2737" ;
+            sc:name "FIG ID" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0916" ;
-            sc:name "Gene report" ;
-            sc:sameAs "http://edamontology.org/data_0916" ],
+            sc:additionalType "http://edamontology.org/data_0916" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Gene report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0916" ;
-            sc:name "Gene report" ;
-            sc:sameAs "http://edamontology.org/data_0916" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0916" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Gene report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0797 ;
@@ -333726,7 +348625,7 @@ NMJ-Analyser requires NMJs to be separated by at least 20um. Images which contai
     sc:url "http://www.nmpdr.org" .
 
 <https://bio.tools/nmr-ts> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0593,
@@ -333746,7 +348645,7 @@ This code is for reference only as it requires MPI and Gaussian environment whic
     sc:url "https://github.com/tsudalab/NMR-TS" .
 
 <https://bio.tools/nmr_constraints_analyser> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0593,
         edam:topic_3444 ;
@@ -333762,7 +348661,7 @@ This code is for reference only as it requires MPI and Gaussian environment whic
     biotools:primaryContact "Alejandro Giorgetti" .
 
 <https://bio.tools/nmrbox> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0593,
         edam:topic_1317,
@@ -333779,7 +348678,7 @@ This code is for reference only as it requires MPI and Gaussian environment whic
     biotools:primaryContact "Support" .
 
 <https://bio.tools/nmre> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0593,
         edam:topic_2275,
@@ -333794,8 +348693,35 @@ This code is for reference only as it requires MPI and Gaussian environment whic
     sc:softwareHelp <http://psb.kobic.re.kr/nmre/index.cgi> ;
     sc:url "http://psb.kobic.re.kr/nmre/" .
 
+<https://bio.tools/nmrf> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_3495" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "RNA sequence" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1045" ;
+            sc:name "Species name" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0659,
+        edam:topic_3170,
+        edam:topic_3474,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.1093/BIB/BBAB480>,
+        "pubmed:34850821" ;
+    sc:description "Identification of multispecies RNA 2'-O-methylation modification sites from RNA sequences." ;
+    sc:featureList edam:operation_0250,
+        edam:operation_3936,
+        edam:operation_3937 ;
+    sc:isAccessibleForFree true ;
+    sc:name "NmRF" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://lab.malab.cn/~acy/NmRF" .
+
 <https://bio.tools/nmrfam-sparky> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0593,
@@ -333813,14 +348739,13 @@ This code is for reference only as it requires MPI and Gaussian environment whic
 
 <https://bio.tools/nmrml_converter> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3488" ;
-            sc:name "NMR spectrum" ;
-            sc:sameAs "http://edamontology.org/data_3488" ] ;
+            sc:additionalType "http://edamontology.org/data_3488" ;
+            sc:name "NMR spectrum" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3488" ;
-            sc:name "NMR spectrum" ;
-            sc:sameAs "http://edamontology.org/data_3488" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3488" ;
+            sc:encodingFormat "http://edamontology.org/format_3825" ;
+            sc:name "NMR spectrum" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0593,
@@ -333838,7 +348763,7 @@ This code is for reference only as it requires MPI and Gaussian environment whic
         "Daniel Schober" .
 
 <https://bio.tools/nmrnet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0593,
@@ -333859,14 +348784,12 @@ This code is for reference only as it requires MPI and Gaussian environment whic
 
 <https://bio.tools/nmrprocflow> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3488" ;
-            sc:name "NMR spectrum" ;
-            sc:sameAs "http://edamontology.org/data_3488" ] ;
+            sc:additionalType "http://edamontology.org/data_3488" ;
+            sc:name "NMR spectrum" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2082" ;
-            sc:name "Matrix" ;
-            sc:sameAs "http://edamontology.org/data_2082" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2082" ;
+            sc:name "Matrix" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Web application" ;
     sc:applicationSubCategory edam:topic_3172 ;
@@ -333889,7 +348812,7 @@ This code is for reference only as it requires MPI and Gaussian environment whic
     biotools:primaryContact <https://orcid.org/0000-0002-6687-7169> .
 
 <https://bio.tools/nmrstarlib> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0219,
         edam:topic_0593,
@@ -333908,7 +348831,7 @@ This code is for reference only as it requires MPI and Gaussian environment whic
     biotools:primaryContact "Andrey Smelter" .
 
 <https://bio.tools/nmsim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0166,
         edam:topic_0176,
@@ -333931,7 +348854,7 @@ This code is for reference only as it requires MPI and Gaussian environment whic
     biotools:primaryContact "Support" .
 
 <https://bio.tools/nn-breastcancerproteins> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0634,
@@ -333953,16 +348876,37 @@ This project is a collaboration from different institutions:.""" ;
     sc:name "NN-breastcancerproteins" ;
     sc:url "https://github.com/muntisa/neural-networks-for-breast-cancer-proteins" .
 
+<https://bio.tools/nn-rnaloc> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0128,
+        edam:topic_0203,
+        edam:topic_2640,
+        edam:topic_3474,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.1101/2021.10.06.463397> ;
+    sc:description "Neural network-based model for prediction of mRNA sub-cellular localization using distance-based sub-sequence profiles." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_2489,
+        edam:operation_3092 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "NN-RNALoc" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/NeginBabaiha/NN-RNALoc" .
+
 <https://bio.tools/nnalign> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Protein features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0804,
         edam:topic_2830 ;
@@ -333981,7 +348925,7 @@ This project is a collaboration from different institutions:.""" ;
         "Morten Nielsen" .
 
 <https://bio.tools/nncon> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0102,
@@ -333999,7 +348943,7 @@ This project is a collaboration from different institutions:.""" ;
     sc:url "http://casp.rnet.missouri.edu/nncon.html" .
 
 <https://bio.tools/nndb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0082,
@@ -334019,8 +348963,31 @@ This project is a collaboration from different institutions:.""" ;
     sc:url "http://rna.urmc.rochester.edu/NNDB" ;
     biotools:primaryContact "David Mathews" .
 
+<https://bio.tools/nnmt> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0602,
+        edam:topic_0769,
+        edam:topic_3304,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.3389/FNINF.2022.835657>,
+        "pmcid:PMC9196133",
+        "pubmed:35712677" ;
+    sc:description "Mean-Field Based Analysis Tools for Neuronal Network Models." ;
+    sc:featureList edam:operation_3454,
+        edam:operation_3860,
+        edam:operation_3927 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "NNMT" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://nnmt.readthedocs.io/en/latest/> ;
+    sc:url "https://github.com/INM-6/nnmt" .
+
 <https://bio.tools/nnn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0602 ;
     sc:citation <https://doi.org/10.1186/1471-2105-8-250> ;
@@ -334035,7 +349002,7 @@ This project is a collaboration from different institutions:.""" ;
     sc:url "http://genomics-pubs.princeton.edu/nnn/" .
 
 <https://bio.tools/nnnorm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3518,
@@ -334055,7 +349022,7 @@ This project is a collaboration from different institutions:.""" ;
     biotools:primaryContact "Adi Laurentiu Tarca" .
 
 <https://bio.tools/nnperm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0625,
@@ -334070,7 +349037,7 @@ This project is a collaboration from different institutions:.""" ;
     sc:url "http://www.davecurtis.net/bvnorth/software.html" .
 
 <https://bio.tools/nnps> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0202,
@@ -334091,7 +349058,7 @@ This project is a collaboration from different institutions:.""" ;
     sc:url "https://github.com/raziyehmasumshah/NNPS" .
 
 <https://bio.tools/nnu-net> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0769,
@@ -334112,7 +349079,7 @@ In current research practice, segmentation pipelines are designed manually and w
     sc:url "https://github.com/MIC-DKFZ/nnUNet" .
 
 <https://bio.tools/nnv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0780,
         edam:topic_3382,
@@ -334127,7 +349094,7 @@ This paper presents the Neural Network Verification (NNV) software tool, a set-b
     sc:url "https://github.com/verivital/nnv/" .
 
 <https://bio.tools/noa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_2259 ;
@@ -334143,8 +349110,31 @@ This paper presents the Neural Network Verification (NNV) software tool, a set-b
     sc:softwareVersion "1.1" ;
     sc:url "http://nrnb.org/tools/noa/" .
 
+<https://bio.tools/nobadwordscombiner> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0078,
+        edam:topic_0091,
+        edam:topic_0621,
+        edam:topic_3168 ;
+    sc:citation <https://doi.org/10.1016/J.XPRO.2021.100888>,
+        "pmcid:PMC8521201",
+        "pubmed:34704076" ;
+    sc:description "Protocol for using NoBadWordsCombiner to merge and minimize \"bad words\" from BLAST hits against multiple eukaryotic gene annotation databases." ;
+    sc:featureList edam:operation_2421,
+        edam:operation_3092,
+        edam:operation_3431 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "NoBadWordsCombiner" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://hsdfinder.com/combiner/" .
+
 <https://bio.tools/nobai> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0099,
@@ -334166,7 +349156,7 @@ This paper presents the Neural Network Verification (NNV) software tool, a set-b
     biotools:primaryContact "Support" .
 
 <https://bio.tools/nod> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080 ;
@@ -334184,7 +349174,7 @@ This paper presents the Neural Network Verification (NNV) software tool, a set-b
     sc:url "http://www.compbio.dundee.ac.uk/www-nod/" .
 
 <https://bio.tools/node2loc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0128,
@@ -334198,7 +349188,7 @@ This paper presents the Neural Network Verification (NNV) software tool, a set-b
     sc:url "https://github.com/xypan1232/node2loc" .
 
 <https://bio.tools/nogea> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0208,
         edam:topic_0602,
@@ -334217,14 +349207,12 @@ Rapid development of high-throughput technologies has permitted the identificati
 
 <https://bio.tools/nohtml> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:name "Report" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -334254,7 +349242,7 @@ Rapid development of high-throughput technologies has permitted the identificati
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/nohtml.html" .
 
 <https://bio.tools/noiseDetection_mRNA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3170,
@@ -334271,7 +349259,7 @@ Abstract Motivation Inconsistent, analytical noise introduced either by the sequ
     sc:url "https://github.com/yry/noiseAnalysis/tree/master/noiseDetection_mRNA" .
 
 <https://bio.tools/noiseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -334293,26 +349281,26 @@ Abstract Motivation Inconsistent, analytical noise introduced either by the sequ
 
 <https://bio.tools/noisy> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3466" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:citation <https://doi.org/10.1093/nar/gkw343>,
@@ -334330,7 +349318,7 @@ Abstract Motivation Inconsistent, analytical noise introduced either by the sequ
     biotools:primaryContact "Galaxy Support Team" .
 
 <https://bio.tools/noisy-as-clean> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3382,
@@ -334352,30 +349340,30 @@ Training and test for Set12 at the same time.""" ;
 
 <https://bio.tools/noisy_oneclick> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3466" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1093/nar/gkw343>,
@@ -334389,14 +349377,14 @@ Training and test for Set12 at the same time.""" ;
 
 <https://bio.tools/noisyr> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1916" ;
-            sc:name "Alignment" ;
-            sc:sameAs "http://edamontology.org/data_1916" ] ;
+            sc:additionalType "http://edamontology.org/data_1916" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Alignment" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1916" ;
-            sc:name "Alignment" ;
-            sc:sameAs "http://edamontology.org/data_1916" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1916" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -334423,14 +349411,12 @@ Training and test for Set12 at the same time.""" ;
 
 <https://bio.tools/nokoi> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ] ;
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:name "Mass spectrometry data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:name "Mass spectrometry data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121 ;
     sc:citation <https://doi.org/10.1021/pr501164r> ;
@@ -334443,29 +349429,30 @@ Training and test for Set12 at the same time.""" ;
     sc:softwareVersion "1" ;
     sc:url "http://genesis.ugent.be/files/costore/Nokoi_utilities.zip" .
 
-<https://bio.tools/nolanlab> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0634,
-        edam:topic_3360,
-        edam:topic_3382,
-        edam:topic_3407 ;
-    sc:citation <https://doi.org/10.1186/S12890-019-0915-6>,
-        "pmcid:PMC6842138",
-        "pubmed:31706309" ;
-    sc:description """Quantitative lung morphology: semi-automated measurement of mean linear intercept.
-
-Our studies focus on predictors of lung function loss in never smoking firefighters from the World Trade Center exposed Fire Department of New York cohort. This group has pre-9/11/01 clinical/spirometric data and continues to have serial post-9/11 assessments. In preliminary data, we demonstrate that elevated serum levels of one such LDL byproduct soon after intense WTC dust exposure is a risk factor for developing abnormal forced expiratory volume in one second (FEV1) years later. This development of lung injury is what we call World Trade Center Lung Injury (WTC-LI).
-
-Our group has demonstrated that mediators of Metabolic Syndrome, inflammation and vascular injury in serum sampled within 6 months of 9 11 are predictive of eventual abnormal lung function.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'MLI', 'MLI PM-exposed', 'chords', 'MLIactual'""" ;
-    sc:featureList edam:operation_3435,
-        edam:operation_3443,
-        edam:operation_3799 ;
-    sc:name "nolanlab" ;
-    sc:url "https://med.nyu.edu/nolanlab" .
+<https://bio.tools/nolitia> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_3304,
+        edam:topic_3315,
+        edam:topic_3318,
+        edam:topic_3520 ;
+    sc:citation <https://doi.org/10.3389/FNINF.2022.876012>,
+        "pmcid:PMC9263366",
+        "pubmed:35811996" ;
+    sc:description "NoLiTiA is a free, open-source Matlab toolbox for nonlinear time series analysis. It incorporates methods from dynamical systems theory, recurrence quantification analysis and information theory." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3799,
+        edam:operation_3935 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "NoLiTiA" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://nolitia.com" .
 
 <https://bio.tools/nomad-ref> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0176,
@@ -334490,7 +349477,7 @@ Our group has demonstrated that mediators of Metabolic Syndrome, inflammation an
     biotools:primaryContact "Marc Delarue" .
 
 <https://bio.tools/nomenclature_ws> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0622 ;
     sc:citation <https://doi.org/10.1007/978-3-8274-2550-8_5> ;
@@ -334505,7 +349492,7 @@ Our group has demonstrated that mediators of Metabolic Syndrome, inflammation an
     sc:url "http://www.miru-vntrplus.org/MIRU/help/helpSOAP.html" .
 
 <https://bio.tools/nomess> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0196,
@@ -334520,7 +349507,7 @@ Our group has demonstrated that mediators of Metabolic Syndrome, inflammation an
     biotools:primaryContact "Prof. Jürgen Cox" .
 
 <https://bio.tools/nomis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3384,
@@ -334538,7 +349525,7 @@ NOMIS is a free tool to compute normative morphometric values for FreeSurfer 6 d
     sc:url "https://github.com/medicslab/NOMIS" .
 
 <https://bio.tools/nomogram> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3399,
         edam:topic_3421,
@@ -334552,22 +349539,8 @@ NOMIS is a free tool to compute normative morphometric values for FreeSurfer 6 d
     sc:name "nomogram" ;
     sc:url "https://linjuli1991.shinyapps.io/dynnomapp/" .
 
-<https://bio.tools/nomophobia> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3303 ;
-    sc:citation <https://doi.org/10.4103/IJPVM.IJPVM_184_19>,
-        "pmcid:PMC6921283",
-        "pubmed:31879551" ;
-    sc:description """Smartphone Use and Addiction Among University Students.
-
-Background:Nomophobia, a state of socio-psychological illness, refers to a fear of lack of access to mobile phone, which is thought to be a modern age disorder that causes negative health risks and harmful psychological effects. This study aimed to determine the relationship between the smartphone use and nomophobia disorder among university students. Methods:The study utilized a cross-sectional method in which 320 students were selected via cluster sampling. Data collection tools included a nomophobia and smartphones use questionnaires. Data were analyzed using SPSS 22 software in two sections: descriptive statistics and inferential statistics. Results:The incidence rate of nomophobia among the students was moderate (3.1), and 73% of the students were moderate smartphone users.
-
-||| HOMEPAGE MISSING!""" ;
-    sc:featureList edam:operation_3435 ;
-    sc:name "nomophobia" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31879551" .
-
 <https://bio.tools/non-b_db> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0082,
@@ -334590,7 +349563,7 @@ Background:Nomophobia, a state of socio-psychological illness, refers to a fear
     biotools:primaryContact "Contact Form" .
 
 <https://bio.tools/non-directional-transient-cells> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3304,
@@ -334609,7 +349582,7 @@ Background:Nomophobia, a state of socio-psychological illness, refers to a fear
     biotools:primaryContact "Massimiliano Versace" .
 
 <https://bio.tools/non-parametric-multivariate-permutation-test> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269 ;
     sc:description "A statistical non-parametric multivariable test based on the Fisher's method for combination of partial tests." ;
@@ -334622,19 +349595,8 @@ Background:Nomophobia, a state of socio-psychological illness, refers to a fear
     sc:url "https://www.mathworks.com/matlabcentral/fileexchange/69764-non-parametric-multivariate-permutation-test" ;
     biotools:primaryContact "Juliano Pierezan" .
 
-<https://bio.tools/non-transferability> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0108,
-        edam:topic_0202,
-        edam:topic_2640 ;
-    sc:citation <https://doi.org/10.1101/731836> ;
-    sc:description "> VERY_LOW CONFIDENCE! | > HOMEPAGE MISSING! | > CORRECT NAME OF TOOL COULD ALSO BE 'response-specific', 'irreproducibility', 'Translational', 'medication' | Methodological Challenges in Translational Drug Response Modeling in Cancer | Abstract Translational models directly relating drug response-specific processes observed in vitro to their in vivo role in cancer patients constitute a crucial part of the development of personalized medication. Unfortunately, ongoing research is often confined by the irreproducibility of the results in other contexts. While the inconsistency of pharmacological data has received great attention recently, the computational aspect of this crisis still deserves closer examination. Notably, studies often focus only on isolated model characteristics instead of examining the overall workflow and the interplay of individual model components. Here, we present a systematic investigation of translational models using the R-package FORESEE" ;
-    sc:featureList edam:operation_3501,
-        edam:operation_3891 ;
-    sc:name "non-transferability" ;
-    sc:url "https://doi.org/10.1101/731836" .
-
 <https://bio.tools/nonadherence> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3172,
@@ -334648,7 +349610,7 @@ Imuputed absolute number of lymphocytes data:.""" ;
     sc:url "https://hradskyo.shinyapps.io/Non_adherence/" .
 
 <https://bio.tools/nonclasgp-pred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3474,
@@ -334665,7 +349627,7 @@ Prediction of non-classically secreted proteins of Gram-positive bacteria.""" ;
     sc:url "http://lab.malab.cn/~wangchao/softwares/NonClasGP/" .
 
 <https://bio.tools/noncode> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0203,
@@ -334686,7 +349648,7 @@ Prediction of non-classically secreted proteins of Gram-positive bacteria.""" ;
     biotools:primaryContact "Runsheng Chen" .
 
 <https://bio.tools/noncoder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_3170,
@@ -334705,7 +349667,7 @@ Prediction of non-classically secreted proteins of Gram-positive bacteria.""" ;
     biotools:primaryContact "Thomas Braun" .
 
 <https://bio.tools/noncorna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
@@ -334726,14 +349688,14 @@ NoncoRNA (http: www.ncdtcdb.cn:8080 NoncoRNA ) is a manually curated database of
 
 <https://bio.tools/nondetects> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Gene expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ] ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "Gene expression data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -334756,7 +349718,7 @@ NoncoRNA (http: www.ncdtcdb.cn:8080 NoncoRNA ) is a manually curated database of
     biotools:primaryContact "Valeriia Sherina" .
 
 <https://bio.tools/nonlinear-drift-correction-spm-orthogonal-image-pairs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0632,
         edam:topic_3070,
@@ -334776,7 +349738,7 @@ NoncoRNA (http: www.ncdtcdb.cn:8080 NoncoRNA ) is a manually curated database of
     biotools:primaryContact "Colin Ophus" .
 
 <https://bio.tools/nonlinear-fit-michaelis-menten> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3374 ;
     sc:description "Computes Michaelis-Menten model parameters" ;
@@ -334790,7 +349752,7 @@ NoncoRNA (http: www.ncdtcdb.cn:8080 NoncoRNA ) is a manually curated database of
     biotools:primaryContact "Housam Binous" .
 
 <https://bio.tools/nonpher> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0209,
         edam:topic_2258,
@@ -334808,30 +349770,30 @@ NoncoRNA (http: www.ncdtcdb.cn:8080 NoncoRNA ) is a manually curated database of
 
 <https://bio.tools/nontarget> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ],
+            sc:additionalType "http://edamontology.org/data_0944" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Peptide mass fingerprint" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0944" ;
-            sc:name "Peptide mass fingerprint" ;
-            sc:sameAs "http://edamontology.org/data_0944" ],
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Mass spectrometry data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ] ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Mass spectrometry spectra" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ],
+            sc:additionalType "http://edamontology.org/data_0944" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Peptide mass fingerprint" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ],
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Mass spectrometry data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0944" ;
-            sc:name "Peptide mass fingerprint" ;
-            sc:sameAs "http://edamontology.org/data_0944" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Mass spectrometry spectra" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -334848,7 +349810,7 @@ NoncoRNA (http: www.ncdtcdb.cn:8080 NoncoRNA ) is a manually curated database of
     sc:url "http://cran.r-project.org/web/packages/nontarget/index.html" .
 
 <https://bio.tools/nopeak> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0160,
@@ -334872,7 +349834,7 @@ The NoPeak Software uses the integration profile of k-mers based on mapped reads
     sc:url "https://github.com/menzel/nopeak" .
 
 <https://bio.tools/norce> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0621,
@@ -334898,7 +349860,7 @@ The NoPeak Software uses the integration profile of k-mers based on mapped reads
     sc:url "https://rpubs.com/golgun/649085" .
 
 <https://bio.tools/norec4dna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0654,
@@ -334920,14 +349882,12 @@ The NoPeak Software uses the integration profile of k-mers based on mapped reads
 
 <https://bio.tools/noreturn> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:name "Report" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -334957,7 +349917,7 @@ The NoPeak Software uses the integration profile of k-mers based on mapped reads
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/noreturn.html" .
 
 <https://bio.tools/noreva> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3172 ;
     sc:citation <https://doi.org/10.1093/nar/gkx449>,
@@ -334973,7 +349933,7 @@ The NoPeak Software uses the integration profile of k-mers based on mapped reads
     biotools:primaryContact "Dr. Bo Li" .
 
 <https://bio.tools/norma> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0602 ;
@@ -334987,7 +349947,7 @@ The NoPeak Software uses the integration profile of k-mers based on mapped reads
     biotools:primaryContact "Georgios Pavlopoulos" .
 
 <https://bio.tools/normal> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_2269,
@@ -335002,7 +349962,7 @@ The NoPeak Software uses the integration profile of k-mers based on mapped reads
     sc:url "http://www.cs.ucr.edu/~polishka/" .
 
 <https://bio.tools/normal-tissue-complication-probability> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3306,
@@ -335019,7 +349979,7 @@ The NoPeak Software uses the integration profile of k-mers based on mapped reads
     biotools:primaryContact "Rex Cheung" .
 
 <https://bio.tools/normalize450k> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -335043,18 +350003,17 @@ The NoPeak Software uses the integration profile of k-mers based on mapped reads
 
 <https://bio.tools/normalyzer> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3112" ;
-            sc:name "Gene expression matrix" ;
-            sc:sameAs "http://edamontology.org/data_3112" ] ;
+            sc:additionalType "http://edamontology.org/data_3112" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Gene expression matrix" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2082" ;
-            sc:name "Matrix" ;
-            sc:sameAs "http://edamontology.org/data_2082" ],
+            sc:additionalType "http://edamontology.org/data_2082" ;
+            sc:name "Matrix" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_3508" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_3071 ;
@@ -335069,7 +350028,7 @@ The NoPeak Software uses the integration profile of k-mers based on mapped reads
     sc:url "http://quantitativeproteomics.org/normalyzer" .
 
 <https://bio.tools/normalyzerde> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0203 ;
@@ -335090,7 +350049,7 @@ The NoPeak Software uses the integration profile of k-mers based on mapped reads
     biotools:primaryContact "Jakob Willforss" .
 
 <https://bio.tools/normgam> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0621,
@@ -335106,7 +350065,7 @@ normGAM is an R package for normalizing genome architecture mapping (GAM) data.
     sc:url "http://dna.cs.miami.edu/normGAM/" .
 
 <https://bio.tools/normirazor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0203,
@@ -335126,7 +350085,7 @@ GitLab is a single application for the entire software development lifecycle. Fr
     sc:url "http://norm.btm.umed.pl" .
 
 <https://bio.tools/normqpcr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3053,
@@ -335148,7 +350107,7 @@ GitLab is a single application for the entire software development lifecycle. Fr
     biotools:primaryContact "James Perkins" .
 
 <https://bio.tools/normr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3125,
@@ -335170,14 +350129,13 @@ GitLab is a single application for the entire software development lifecycle. Fr
 
 <https://bio.tools/norsnet> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2886" ;
-            sc:name "Protein sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2886" ] ;
+            sc:additionalType "http://edamontology.org/data_2886" ;
+            sc:name "Protein sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0896" ;
-            sc:name "Protein report" ;
-            sc:sameAs "http://edamontology.org/data_0896" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0896" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Protein report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_2814 ;
@@ -335202,7 +350160,7 @@ GitLab is a single application for the entire software development lifecycle. Fr
     sc:url "http://ppopen.informatik.tu-muenchen.de/" .
 
 <https://bio.tools/norsp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -335223,7 +350181,7 @@ GitLab is a single application for the entire software development lifecycle. Fr
     biotools:primaryContact "Burkhard Rost" .
 
 <https://bio.tools/nosoi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_3305,
@@ -335242,14 +350200,12 @@ The aim of nosoi (pronounced no.si) is to provide a flexible agent-based stochas
 
 <https://bio.tools/nospace> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:name "Report" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -335280,14 +350236,12 @@ The aim of nosoi (pronounced no.si) is to provide a flexible agent-based stochas
 
 <https://bio.tools/notab> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:name "Report" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -335318,14 +350272,12 @@ The aim of nosoi (pronounced no.si) is to provide a flexible agent-based stochas
 
 <https://bio.tools/notseq> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -335355,7 +350307,7 @@ The aim of nosoi (pronounced no.si) is to provide a flexible agent-based stochas
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/notseq.html" .
 
 <https://bio.tools/notung> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0194,
         edam:topic_0199,
@@ -335371,7 +350323,7 @@ The aim of nosoi (pronounced no.si) is to provide a flexible agent-based stochas
     sc:url "http://www.cs.cmu.edu/~durand/Notung/" .
 
 <https://bio.tools/nova> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0602 ;
@@ -335388,7 +350340,7 @@ The aim of nosoi (pronounced no.si) is to provide a flexible agent-based stochas
         "Ina Koch" .
 
 <https://bio.tools/novel-retinal-vessel-segmentation-fundus-images> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3303,
@@ -335407,7 +350359,7 @@ The aim of nosoi (pronounced no.si) is to provide a flexible agent-based stochas
     biotools:primaryContact "Tyler Coye" .
 
 <https://bio.tools/novelseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3175 ;
     sc:citation "pubmed:20385726" ;
@@ -335423,7 +350375,7 @@ The aim of nosoi (pronounced no.si) is to provide a flexible agent-based stochas
     biotools:primaryContact "IMAN HAJIRASOULIHA" .
 
 <https://bio.tools/novifast> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3070,
@@ -335445,7 +350397,7 @@ The aim of nosoi (pronounced no.si) is to provide a flexible agent-based stochas
     biotools:primaryContact "Gabriel Ramos Llordén" .
 
 <https://bio.tools/novoalign> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3170,
@@ -335473,7 +350425,7 @@ The aim of nosoi (pronounced no.si) is to provide a flexible agent-based stochas
     sc:url "http://www.novocraft.com/products/novoalign/" .
 
 <https://bio.tools/novoaligncs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3170,
@@ -335490,7 +350442,7 @@ The aim of nosoi (pronounced no.si) is to provide a flexible agent-based stochas
     sc:url "http://www.novocraft.com/products/novoalign/" .
 
 <https://bio.tools/novocaller> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0625,
@@ -335509,7 +350461,7 @@ novoCaller is a Bayesian de novo variant calling algorithm that uses information
     sc:url "https://github.com/bgm-cwg/novoCaller" .
 
 <https://bio.tools/novocraft> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0659,
@@ -335527,7 +350479,7 @@ novoCaller is a Bayesian de novo variant calling algorithm that uses information
     biotools:primaryContact "Contact form" .
 
 <https://bio.tools/novohmm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0154,
@@ -335543,14 +350495,14 @@ novoCaller is a Bayesian de novo variant calling algorithm that uses information
 
 <https://bio.tools/novor> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3651" ;
+            sc:name "Mass spectrometry spectra" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Peptide identification" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3474,
@@ -335567,7 +350519,7 @@ novoCaller is a Bayesian de novo variant calling algorithm that uses information
     sc:url "https://www.rapidnovor.com/" .
 
 <https://bio.tools/novosparc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2229,
@@ -335591,7 +350543,7 @@ novoCaller is a Bayesian de novo variant calling algorithm that uses information
     sc:url "https://pypi.org/project/novosparc" .
 
 <https://bio.tools/novowrap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0102,
@@ -335613,8 +350565,83 @@ novoCaller is a Bayesian de novo variant calling algorithm that uses information
     sc:url "https://github.com/wpwupingwp/novowrap" ;
     biotools:primaryContact "Shiliang Zhou" .
 
+<https://bio.tools/nowinbrain> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3067,
+        edam:topic_3304,
+        edam:topic_3384,
+        edam:topic_3444,
+        edam:topic_3452 ;
+    sc:citation <https://doi.org/10.1007/S10278-021-00528-0>,
+        "pmcid:PMC8921370",
+        "pubmed:35013825" ;
+    sc:description "A Large, Systematic, and Extendable Repository of 3D Reconstructed Images of a Living Human Brain Cum Head and Neck." ;
+    sc:featureList edam:operation_3431,
+        edam:operation_3443,
+        edam:operation_3553 ;
+    sc:isAccessibleForFree true ;
+    sc:name "NOWinBRAIN" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://www.nowinbrain.org" .
+
+<https://bio.tools/np-mrd> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_0938" ;
+            sc:name "Raw NMR data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0209,
+        edam:topic_0593,
+        edam:topic_3172,
+        edam:topic_3292 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAB1052>,
+        "pmcid:PMC8728158",
+        "pubmed:34791429" ;
+    sc:description "The NP-MRD is a freely available cloud-based, user-friendly, FAIR electronic database. NP-MRD accepts NMR data and associated metadata from newly undertaken NP studies." ;
+    sc:featureList edam:operation_0335,
+        edam:operation_2421,
+        edam:operation_2422,
+        edam:operation_3431,
+        edam:operation_3803 ;
+    sc:isAccessibleForFree true ;
+    sc:name "NP-MRD" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://np-mrd.org" .
+
+<https://bio.tools/np_analyst> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0769,
+        edam:topic_3172,
+        edam:topic_3343,
+        edam:topic_3520 ;
+    sc:citation <https://doi.org/10.1021/ACSCENTSCI.1C01108>,
+        "pmcid:PMC8874762",
+        "pubmed:35233454" ;
+    sc:description "NP Analyst is a platform-independent tool for integrating bio-activity data with metabolomics data." ;
+    sc:featureList edam:operation_0335,
+        edam:operation_2429,
+        edam:operation_3860 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "NP Analyst" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://liningtonlab.github.io/npanalyst_documentation/> ;
+    sc:url "http://www.npanalyst.org" .
+
 <https://bio.tools/npact> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0654,
@@ -335631,8 +350658,24 @@ novoCaller is a Bayesian de novo variant calling algorithm that uses information
     sc:url "http://genome.ufl.edu/npact/" ;
     biotools:primaryContact "Brocchieri L" .
 
+<https://bio.tools/npact_naturally_occuring_plant_based_anticancerous_compound-activity-target_database> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:citation <https://doi.org/10.1093/nar/gks1047>,
+        "pmcid:PMC3531140",
+        "pubmed:23203877" ;
+    sc:description "NPACT is a curated database of Plant derived natural compounds that exhibit anti-cancerous activity." ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "npact : Naturally occuring Plant based Anticancerous Compound-Activity-Target DataBase" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/npact/> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/npact/" .
+
 <https://bio.tools/nparact> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3334,
         edam:topic_3419 ;
@@ -335650,8 +350693,31 @@ novoCaller is a Bayesian de novo variant calling algorithm that uses information
     sc:url "https://cran.r-project.org/web/packages/nparACT/index.html" ;
     biotools:primaryContact <http://orcid.org/0000-0003-2328-9612> .
 
+<https://bio.tools/npars> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0114,
+        edam:topic_0203,
+        edam:topic_0622,
+        edam:topic_3168,
+        edam:topic_3344 ;
+    sc:citation <https://doi.org/10.3389/FDATA.2021.725095>,
+        "pmcid:PMC8503682",
+        "pubmed:34647017" ;
+    sc:description "Novel Approach to Address Accuracy and Reproducibility in Genomic Data Science." ;
+    sc:featureList edam:operation_2939,
+        edam:operation_3799,
+        edam:operation_3891 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "NPARS" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://gitlab.com/erichpeterson/npars-analysis" .
+
 <https://bio.tools/npatlas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
@@ -335676,7 +350742,7 @@ The Natural Products Atlas Network views of chemical space.""" ;
     sc:url "https://tm.gdb.tools/map4/npatlas_map_tmap/" .
 
 <https://bio.tools/npbs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0780,
@@ -335696,7 +350762,7 @@ NPBS Database of Shanghai Institute of Organic Chemistry.""" ;
     sc:url "http://www.organchem.csdb.cn/scdb/NPBS" .
 
 <https://bio.tools/npbss> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_3168 ;
@@ -335712,7 +350778,7 @@ NPBS Database of Shanghai Institute of Organic Chemistry.""" ;
     biotools:primaryContact "Shao-Wu Zhang" .
 
 <https://bio.tools/npcare> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_2258,
         edam:topic_2640,
@@ -335728,8 +350794,31 @@ NPBS Database of Shanghai Institute of Organic Chemistry.""" ;
     sc:url "http://silver.sejong.ac.kr/npcare" ;
     biotools:primaryContact "Hwangseo Park" .
 
+<https://bio.tools/npcdr> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0202,
+        edam:topic_0209,
+        edam:topic_0634,
+        edam:topic_3292,
+        edam:topic_3375 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAB913>,
+        "pmcid:PMC8728151",
+        "pubmed:34664659" ;
+    sc:description "Natural product-based drug combination and its disease-specific molecular regulation." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_0533,
+        edam:operation_4009 ;
+    sc:isAccessibleForFree true ;
+    sc:name "NPCDR" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://npcdr.idrblab.net/" .
+
 <https://bio.tools/npclassifier> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0154,
@@ -335755,7 +350844,7 @@ You can also provide cached flag to the params to get the cached version so make
     sc:url "https://npclassifier.ucsd.edu" .
 
 <https://bio.tools/npd_ws> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1093/emboj/21.6.1248> ;
@@ -335770,7 +350859,7 @@ You can also provide cached flag to the params to get the cached version so make
     sc:url "http://npd.hgu.mrc.ac.uk/user/services" .
 
 <https://bio.tools/npdock> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0099,
@@ -335790,7 +350879,7 @@ You can also provide cached flag to the params to get the cached version so make
     biotools:primaryContact "Janusz Bujnicki" .
 
 <https://bio.tools/npdr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3170,
@@ -335811,7 +350900,7 @@ Nearest-neighbor Projected-Distance Regression (NPDR).""" ;
     sc:url "https://insilico.github.io/npdr/" .
 
 <https://bio.tools/npgsea> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -335832,7 +350921,7 @@ Nearest-neighbor Projected-Distance Regression (NPDR).""" ;
     biotools:primaryContact "Jessica Larson" .
 
 <https://bio.tools/nphase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
@@ -335855,7 +350944,7 @@ nPhase is a ploidy agnostic tool developed in python which predicts the haplotyp
     sc:url "https://github.com/nPhasePipeline/nPhase" .
 
 <https://bio.tools/npi-gnn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_0769,
@@ -335870,8 +350959,28 @@ nPhase is a ploidy agnostic tool developed in python which predicts the haplotyp
     sc:name "NPI-GNN" ;
     sc:url "https://github.com/AshuiRUA/NPI-GNN" .
 
+<https://bio.tools/npi-rgcnae> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0128,
+        edam:topic_0659,
+        edam:topic_3063 ;
+    sc:citation <https://doi.org/10.1109/JBHI.2021.3122527>,
+        "pubmed:34699377" ;
+    sc:description "Fast predicting ncRNA-protein interactions using the Relational Graph Convolutional Network Auto-Encoder." ;
+    sc:featureList edam:operation_3431,
+        edam:operation_3901,
+        edam:operation_3927 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "NPI-RGCNAE" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/Angelia0hh/NPI-RGCNAE" .
+
 <https://bio.tools/npin> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3382,
@@ -335887,7 +350996,7 @@ FlyCircuit is a public database for online archiving, cell type inventory, brows
     sc:url "https://npin-for-drosophila.herokuapp.com/" .
 
 <https://bio.tools/nplb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654,
@@ -335904,7 +351013,7 @@ FlyCircuit is a public database for online archiving, cell type inventory, brows
     sc:url "http://nplb.ncl.res.in/" .
 
 <https://bio.tools/nppred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078 ;
     sc:citation <https://doi.org/10.1186/1471-2105-10-22>,
@@ -335917,11 +351026,11 @@ FlyCircuit is a public database for online archiving, cell type inventory, brows
     sc:operatingSystem "Linux",
         "Mac",
         "Windows" ;
-    sc:url "http://www.imtech.res.in/raghava/nppred/" ;
+    sc:url "http://webs.iiitd.edu.in/raghava/nppred/" ;
     biotools:primaryContact <https://orcid.org/0000-0002-8902-2876> .
 
 <https://bio.tools/nps> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3169,
         edam:topic_3173 ;
@@ -335936,7 +351045,7 @@ FlyCircuit is a public database for online archiving, cell type inventory, brows
     biotools:primaryContact "Chenfei Wang" .
 
 <https://bio.tools/nps-protein> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080 ;
@@ -335953,20 +351062,43 @@ FlyCircuit is a public database for online archiving, cell type inventory, brows
     biotools:primaryContact "Gilbert DELEAGE",
         "Raphael TERREUX" .
 
+<https://bio.tools/nps_natural_products> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0621,
+        edam:topic_0780,
+        edam:topic_2258,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1186/S13321-021-00559-3>,
+        "pmcid:PMC8524952",
+        "pubmed:34663470" ;
+    sc:description "Classifying natural products from plants, fungi or bacteria using the COCONUT database and machine learning." ;
+    sc:featureList edam:operation_0224,
+        edam:operation_0394,
+        edam:operation_2942,
+        edam:operation_3935 ;
+    sc:isAccessibleForFree true ;
+    sc:name "NPs (Natural products)" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://np-svm-map4.gdb.tools/" .
+
 <https://bio.tools/npscarf> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1383" ;
-            sc:name "Sequence alignment (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1383" ],
+            sc:additionalType "http://edamontology.org/data_1383" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Sequence alignment (nucleic acid)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0925" ;
-            sc:name "Sequence assembly" ;
-            sc:sameAs "http://edamontology.org/data_0925" ] ;
+            sc:additionalType "http://edamontology.org/data_0925" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence assembly" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence record" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3168 ;
@@ -335983,7 +351115,7 @@ FlyCircuit is a public database for online archiving, cell type inventory, brows
     biotools:primaryContact "Minh Duc Cao" .
 
 <https://bio.tools/npseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_2269,
@@ -336001,13 +351133,37 @@ FlyCircuit is a public database for online archiving, cell type inventory, brows
     biotools:primaryContact "Jun Li" .
 
 <https://bio.tools/npsv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "NPSV is Python-based tool for stand-alone genotyping of deletion and insertion structural variants (SVs) in short-read whole genome sequencing (WGS) data. NPSV implements a machine learning-based approach for SV genotyping that employs NGS simulation to model the combined effects of the genomic region, sequencer and alignment pipeline." ;
     sc:name "NPSV" ;
     sc:url "https://github.com/mlinderm/npsv" .
 
+<https://bio.tools/npvis> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0121,
+        edam:topic_0153,
+        edam:topic_0154,
+        edam:topic_3172,
+        edam:topic_3520 ;
+    sc:citation <https://doi.org/10.3390/METABO12080706>,
+        "pmcid:PMC9415073",
+        "pubmed:36005578" ;
+    sc:description "An Interactive Visualizer of Peptidic Natural Product-MS/MS Matches." ;
+    sc:featureList edam:operation_3644,
+        edam:operation_3646,
+        edam:operation_3694,
+        edam:operation_3860 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "NPvis" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/ablab/NPvis" .
+
 <https://bio.tools/nq-flipper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -336032,7 +351188,7 @@ FlyCircuit is a public database for online archiving, cell type inventory, brows
     biotools:primaryContact "Chris Weichenberger" .
 
 <https://bio.tools/nqontrol> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3372,
         edam:topic_3512,
@@ -336046,8 +351202,29 @@ In this paper, we present NQontrol, a digital feedback-control solution based on
     sc:name "NQontrol" ;
     sc:url "https://gitlab.com/las-nq/nqontrol" .
 
+<https://bio.tools/nr-toxpred> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_2275,
+        edam:topic_3047,
+        edam:topic_3343,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1093/BIB/BBAC114>,
+        "pmcid:PMC9116378",
+        "pubmed:35383362" ;
+    sc:description "Predicting the binding of small molecules to nuclear receptors using machine learning." ;
+    sc:featureList edam:operation_0478,
+        edam:operation_4009 ;
+    sc:isAccessibleForFree true ;
+    sc:name "NR-ToxPred" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://nr-toxpred.cchem.berkeley.edu" .
+
 <https://bio.tools/nrg-cing> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0154,
@@ -336067,7 +351244,7 @@ In this paper, we present NQontrol, a digital feedback-control solution based on
         "Jurgen F. Doreleijers" .
 
 <https://bio.tools/nrgten> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0154,
@@ -336088,7 +351265,7 @@ In this paper, we present NQontrol, a digital feedback-control solution based on
     biotools:primaryContact "Rafael Najmanovich" .
 
 <https://bio.tools/nrpred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0204,
@@ -336102,11 +351279,11 @@ In this paper, we present NQontrol, a digital feedback-control solution based on
         "Mac",
         "Windows" ;
     sc:softwareHelp <http://crdd.osdd.net/raghava/nrpred/help.html> ;
-    sc:url "http://www.imtech.res.in/raghava/nrpred/" ;
+    sc:url "http://webs.iiitd.edu.in/raghava/nrpred/" ;
     biotools:primaryContact "G.P.S Raghava" .
 
 <https://bio.tools/nrprof> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_1775 ;
@@ -336126,7 +351303,7 @@ In this paper, we present NQontrol, a digital feedback-control solution based on
     sc:url "http://jjwanglab.org:8080/hkubioinfo/NRProF/NRProF.jsp" .
 
 <https://bio.tools/nrps-pks> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3168 ;
@@ -336145,7 +351322,7 @@ In this paper, we present NQontrol, a digital feedback-control solution based on
     biotools:primaryContact "Jacques Ravel" .
 
 <https://bio.tools/nrpspredictor2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0154,
@@ -336170,7 +351347,7 @@ In this paper, we present NQontrol, a digital feedback-control solution based on
     biotools:primaryContact "Marc Röttig" .
 
 <https://bio.tools/nrsas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_1317,
@@ -336188,7 +351365,7 @@ In this paper, we present NQontrol, a digital feedback-control solution based on
     sc:url "http://www.receptors.org/NR/servers/html/" .
 
 <https://bio.tools/nrwrh> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0140,
@@ -336206,7 +351383,7 @@ In this paper, we present NQontrol, a digital feedback-control solution based on
     biotools:primaryContact "Xing Chen" .
 
 <https://bio.tools/ns-forest> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0659,
@@ -336225,7 +351402,7 @@ Necessary and Sufficient Forest (NS-Forest) for Cell Type Marker Determination f
     sc:url "https://github.com/JCVenterInstitute/NSForest" .
 
 <https://bio.tools/nsLTP> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0153,
@@ -336241,7 +351418,7 @@ Necessary and Sufficient Forest (NS-Forest) for Cell Type Marker Determination f
     sc:url "http://atome.cbs.cnrs.fr/AT2B/SERVER/LTP.html" .
 
 <https://bio.tools/nsdna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_0659,
@@ -336261,7 +351438,7 @@ Necessary and Sufficient Forest (NS-Forest) for Cell Type Marker Determination f
     biotools:primaryContact "Support" .
 
 <https://bio.tools/nsite> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_2269,
@@ -336277,7 +351454,7 @@ Necessary and Sufficient Forest (NS-Forest) for Cell Type Marker Determination f
     biotools:primaryContact "Solovyev VV" .
 
 <https://bio.tools/nsmap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3320 ;
@@ -336294,7 +351471,7 @@ Necessary and Sufficient Forest (NS-Forest) for Cell Type Marker Determination f
     sc:url "https://sites.google.com/site/nsmapforrnaseq/home" .
 
 <https://bio.tools/nsrrr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -336312,7 +351489,7 @@ Necessary and Sufficient Forest (NS-Forest) for Cell Type Marker Determination f
     biotools:primaryContact "Giovanni Montana" .
 
 <https://bio.tools/nssnpanalyzer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0625,
@@ -336333,8 +351510,33 @@ Necessary and Sufficient Forest (NS-Forest) for Cell Type Marker Determination f
     sc:url "http://snpanalyzer.uthsc.edu/" ;
     biotools:primaryContact "nsSNPAnalyzer Support" .
 
+<https://bio.tools/nt-seq> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0160,
+        edam:topic_0654,
+        edam:topic_3295,
+        edam:topic_3673,
+        edam:topic_3674 ;
+    sc:citation <https://doi.org/10.1186/S13059-022-02689-9>,
+        "pmcid:PMC9150344",
+        "pubmed:35637459" ;
+    sc:description "A chemical-based sequencing method for genomic methylome profiling." ;
+    sc:featureList edam:operation_0238,
+        edam:operation_0239,
+        edam:operation_3186,
+        edam:operation_3207,
+        edam:operation_3919 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "NT-seq" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/TaoLabBCM/NT-seq" .
+
 <https://bio.tools/ntEdit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196 ;
     sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTZ400>,
@@ -336353,7 +351555,7 @@ Necessary and Sufficient Forest (NS-Forest) for Cell Type Marker Determination f
     biotools:primaryContact "René L. Warren" .
 
 <https://bio.tools/ntcard> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0622,
@@ -336370,8 +351572,45 @@ Necessary and Sufficient Forest (NS-Forest) for Cell Type Marker Determination f
     biotools:primaryContact "Hamid Mohamadi",
         "Inanc Birol" .
 
+<https://bio.tools/nteditsealer> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0077,
+        edam:topic_0196,
+        edam:topic_0622 ;
+    sc:citation <https://doi.org/10.1002/CPZ1.442>,
+        "pmcid:PMC9196995",
+        "pubmed:35567771" ;
+    sc:description "Efficient Targeted Error Resolution and Automated Finishing of Long-Read Genome Assemblies." ;
+    sc:featureList edam:operation_0525,
+        edam:operation_3195,
+        edam:operation_3198 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "ntEdit+Sealer" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/bcgsc/ntedit_sealer_protocol" .
+
+<https://bio.tools/nthash2> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0091,
+        edam:topic_3168 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC564>,
+        "pubmed:36000872" ;
+    sc:description "Recursive spaced seed hashing for nucleotide sequences." ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "ntHash2" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://github.com/bcgsc/ntHash" .
+
 <https://bio.tools/nthits> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0621,
@@ -336394,14 +351633,12 @@ ntHits uses OpenMP for parallelization, which requires a modern compiler such as
 
 <https://bio.tools/nthseq> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -336432,14 +351669,12 @@ ntHits uses OpenMP for parallelization, which requires a modern compiler such as
 
 <https://bio.tools/nthseqset> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -336469,7 +351704,7 @@ ntHits uses OpenMP for parallelization, which requires a modern compiler such as
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/nthseqset.html" .
 
 <https://bio.tools/ntmg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0632,
@@ -336483,8 +351718,26 @@ ntHits uses OpenMP for parallelization, which requires a modern compiler such as
     sc:name "NTMG" ;
     sc:url "http://oblab.cs.nchu.edu.tw:8080/WebSDL/" .
 
+<https://bio.tools/ntu-waa> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3067,
+        edam:topic_3304,
+        edam:topic_3322,
+        edam:topic_3334 ;
+    sc:citation <https://doi.org/10.1186/S12909-022-03405-8>,
+        "pmcid:PMC9064542",
+        "pubmed:35505291" ;
+    sc:description "Benefits of a bilingual web-based anatomy atlas for nursing students in learning anatomy." ;
+    sc:isAccessibleForFree true ;
+    sc:name "NTU-WAA" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://140.112.120.113/~mfc/NTU_WAA/" .
+
 <https://bio.tools/ntue> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0659,
@@ -336500,7 +351753,7 @@ ntHits uses OpenMP for parallelization, which requires a modern compiler such as
     sc:url "http://bioclues.org/NtUE/index.php" .
 
 <https://bio.tools/ntw> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0602,
@@ -336519,27 +351772,22 @@ ntHits uses OpenMP for parallelization, which requires a modern compiler such as
     sc:url "http://bioconductor.org/packages/release/bioc/html/NTW.html" ;
     biotools:primaryContact "Yuanhua Liu" .
 
-<https://bio.tools/nuCpos> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0621,
-        edam:topic_0749,
-        edam:topic_3176,
-        edam:topic_3295,
-        edam:topic_3306 ;
-    sc:citation <https://doi.org/10.1101/2019.12.25.888305> ;
-    sc:description """Chemical map–based prediction of nucleosome positioning using the Bioconductor package nuCpos.
-
-Abstract Background Methods for predicting nucleosome positioning include bioinformatics, biophysical, and combined approaches. An advantage of bioinformatics methods, which are based on in vivo nucleosome maps, is the use of natural sequences that may contain previously unknown elements involved in nucleosome positioning in vivo. The accuracy of such prediction attempts reflects the genomic coordinate resolution of the nucleosome maps applied. Thus, nucleosome maps constructed using Micrococcus nuclease (MNase), which has a strong preference for A T-rich sequences, may not be appropriate for this purpose. In addition to MNase seq based maps, base pair resolution chemical maps of in vivo nucleosomes from three different species (budding and fission yeasts, and mouse) are currently available.
-
-||| HOMEPAGE MISSING!""" ;
-    sc:featureList edam:operation_0432,
-        edam:operation_0440,
-        edam:operation_2429 ;
-    sc:license "GPL-2.0" ;
-    sc:name "nuCpos" ;
-    sc:url "https://doi.org/10.1101/2019.12.25.888305" .
+<https://bio.tools/ntxpred> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:citation "pubmed:18391230" ;
+    sc:description "The aim of NTXpred server is to predict Neurotoxins and its source and probable function from primary amino acid sequence using SVM based on composition and PSI-Blast." ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "ntxpred" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/ntxpred/> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/ntxpred/" .
 
 <https://bio.tools/nubeam-dedup> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_2269,
@@ -336559,7 +351807,7 @@ nubeam-dedup is a fast and easy-to-use bioinformatics tool removing exact PCR du
     sc:url "https://haplotype.org" .
 
 <https://bio.tools/nucbreak> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
@@ -336578,7 +351826,7 @@ NucBreak detects structural errors in assemblies and structural variants between
     sc:url "https://github.com/uio-bmi/NucBreak" .
 
 <https://bio.tools/nucgen> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654 ;
@@ -336593,7 +351841,7 @@ NucBreak detects structural errors in assemblies and structural variants between
     sc:url "http://nucleix.mbu.iisc.ernet.in/nucgen/index.htm" .
 
 <https://bio.tools/nuclear-medicine-calculator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3303,
         edam:topic_3306,
@@ -336610,7 +351858,7 @@ NucBreak detects structural errors in assemblies and structural variants between
     biotools:primaryContact "Omer Demirkaya" .
 
 <https://bio.tools/nucleardb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0602,
@@ -336631,7 +351879,7 @@ NucBreak detects structural errors in assemblies and structural variants between
     biotools:primaryContact "Gert Vriend" .
 
 <https://bio.tools/nuclei-counter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -336648,7 +351896,7 @@ NucBreak detects structural errors in assemblies and structural variants between
     biotools:primaryContact "naive" .
 
 <https://bio.tools/nucleofinder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3053,
@@ -336663,8 +351911,32 @@ NucBreak detects structural errors in assemblies and structural variants between
     sc:softwareVersion "1.0" ;
     sc:url "https://sites.google.com/site/beckerjeremie/home/nucleofinder" .
 
+<https://bio.tools/nucleomap> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0621,
+        edam:topic_0749,
+        edam:topic_3169,
+        edam:topic_3176,
+        edam:topic_3295 ;
+    sc:citation <https://doi.org/10.1371/JOURNAL.PCBI.1010265>,
+        "pmcid:PMC9321407",
+        "pubmed:35834552" ;
+    sc:description "A computational tool for identifying nucleosomes in ultra-high resolution contact maps." ;
+    sc:featureList edam:operation_0272,
+        edam:operation_0432,
+        edam:operation_2429,
+        edam:operation_3222 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Apache-2.0" ;
+    sc:name "NucleoMap" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/liu-bioinfo-lab/NucleoMap" .
+
 <https://bio.tools/nucleos> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0077 ;
     sc:citation <https://doi.org/10.1371/journal.pone.0050240> ;
@@ -336680,7 +351952,7 @@ NucBreak detects structural errors in assemblies and structural variants between
     sc:url "http://nucleos.bio.uniroma2.it/nucleos" .
 
 <https://bio.tools/nucleosim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0077,
@@ -336701,7 +351973,7 @@ NucBreak detects structural errors in assemblies and structural variants between
     biotools:primaryContact "Astrid Deschenes" .
 
 <https://bio.tools/nucler> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3168,
@@ -336722,7 +351994,7 @@ NucBreak detects structural errors in assemblies and structural variants between
     biotools:primaryContact "Ricard Illa" .
 
 <https://bio.tools/nucleusj> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_2229,
@@ -336739,7 +352011,7 @@ NucBreak detects structural errors in assemblies and structural variants between
     biotools:primaryContact "Axel Poulet" .
 
 <https://bio.tools/nuclitrack> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3382 ;
@@ -336755,7 +352027,7 @@ NucBreak detects structural errors in assemblies and structural variants between
     biotools:primaryContact "Sam Cooper" .
 
 <https://bio.tools/nuclitrack-matlab> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_3070,
@@ -336773,7 +352045,7 @@ NucBreak detects structural errors in assemblies and structural variants between
     biotools:primaryContact "Sam Cooper" .
 
 <https://bio.tools/nucloc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0611,
@@ -336790,7 +352062,7 @@ NucBreak detects structural errors in assemblies and structural variants between
     sc:url "http://www.nucloc.org/index.html" .
 
 <https://bio.tools/nucls> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description """Repository containing the codebase corresponding to the following two papers:
 
 
@@ -336802,7 +352074,7 @@ NucBreak detects structural errors in assemblies and structural variants between
     sc:url "https://github.com/PathologyDataScience/NuCLS" .
 
 <https://bio.tools/nucome> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0621,
@@ -336825,16 +352097,38 @@ NucBreak detects structural errors in assemblies and structural variants between
         "Windows" ;
     sc:url "http://compbio-zhanglab.org/NUCOME" .
 
+<https://bio.tools/nucposdb> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0199,
+        edam:topic_2229,
+        edam:topic_3169,
+        edam:topic_3176,
+        edam:topic_3295 ;
+    sc:citation <https://doi.org/10.1007/s00412-021-00766-9>,
+        "pmcid:PMC8776978",
+        "pubmed:35061087" ;
+    sc:description "A database of nucleosome positioning in vivo and nucleosomics of cell-free DNA." ;
+    sc:featureList edam:operation_0432,
+        edam:operation_2520,
+        edam:operation_3196,
+        edam:operation_3891 ;
+    sc:isAccessibleForFree true ;
+    sc:name "NucPosDB" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://generegulation.org/nucposdb/" .
+
 <https://bio.tools/nucpred> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:name "Protein sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:name "Protein features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btm066> ;
@@ -336851,8 +352145,35 @@ NucBreak detects structural errors in assemblies and structural variants between
     sc:url "https://nucpred.bioinfo.se/nucpred/" ;
     biotools:primaryContact "Robert M. MacCallum" .
 
+<https://bio.tools/nucpred_rna> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_3495" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "RNA sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0099,
+        edam:topic_0128,
+        edam:topic_0749,
+        edam:topic_3170,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1016/J.CSBJ.2022.06.036>,
+        "pmcid:PMC9249596",
+        "pubmed:35832617" ;
+    sc:description "A comparative analysis of machine learning classifiers for predicting protein-binding nucleotides in RNA sequences." ;
+    sc:featureList edam:operation_0267,
+        edam:operation_3901,
+        edam:operation_3902 ;
+    sc:isAccessibleForFree true ;
+    sc:name "Nucpred" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <http://www.csb.iitkgp.ac.in/applications/Nucpred/mannual.php> ;
+    sc:url "http://www.csb.iitkgp.ac.in/applications/Nucpred/index" .
+
 <https://bio.tools/nucular> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0084,
@@ -336867,7 +352188,7 @@ NucBreak detects structural errors in assemblies and structural variants between
     biotools:primaryContact "Mathieu Lemire" .
 
 <https://bio.tools/nucwave> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0654,
@@ -336882,7 +352203,7 @@ NucBreak detects structural errors in assemblies and structural variants between
     sc:url "http://nucleosome.usal.es/nucwave/" .
 
 <https://bio.tools/nudge> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -336901,7 +352222,7 @@ NucBreak detects structural errors in assemblies and structural variants between
     biotools:primaryContact "N. Dean" .
 
 <https://bio.tools/nulceihomo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -336920,7 +352241,7 @@ NucBreak detects structural errors in assemblies and structural variants between
     biotools:primaryContact "Cheng Lu" .
 
 <https://bio.tools/nullarbor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0622 ;
@@ -336955,7 +352276,7 @@ NucBreak detects structural errors in assemblies and structural variants between
         "Torsten Seemann" .
 
 <https://bio.tools/nullseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:citation <https://doi.org/10.1371/journal.pcbi.1005184> ;
@@ -336965,7 +352286,7 @@ NucBreak detects structural errors in assemblies and structural variants between
     sc:url "https://github.com/amarallab/NullSeq" .
 
 <https://bio.tools/nuparm-plus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0099,
@@ -336981,7 +352302,7 @@ NucBreak detects structural errors in assemblies and structural variants between
     sc:url "http://nucleix.mbu.iisc.ernet.in/nuparm/" .
 
 <https://bio.tools/nupop> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3125,
@@ -337001,7 +352322,7 @@ NucBreak detects structural errors in assemblies and structural variants between
     biotools:primaryContact "Ji-Ping Wang" .
 
 <https://bio.tools/nura> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0202,
@@ -337019,7 +352340,7 @@ Nuclear receptors (NRs) are key regulators of human health and constitute a rele
     sc:url "https://doi.org/10.5281/zenodo.3991561" .
 
 <https://bio.tools/nurd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3053,
         edam:topic_3170,
@@ -337034,7 +352355,7 @@ Nuclear receptors (NRs) are key regulators of human health and constitute a rele
     biotools:primaryContact "Xuegong Zhan" .
 
 <https://bio.tools/nust> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654 ;
     sc:citation <https://doi.org/10.1039/C0MB00213E>,
@@ -337050,7 +352371,7 @@ Nuclear receptors (NRs) are key regulators of human health and constitute a rele
     sc:url "http://www.lcqb.upmc.fr/nust/" .
 
 <https://bio.tools/nutil> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0769,
@@ -337072,7 +352393,7 @@ Nutil simplifies and streamlines the pre-and-post processing of 2D brain image d
     sc:url "https://www.nitrc.org/projects/nutil/" .
 
 <https://bio.tools/nutmeg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_2269,
@@ -337090,7 +352411,7 @@ NUTMEG (Neurodynamic Utility Toolbox for Magnetoencephalography) is an open-sour
     sc:url "http://nitrc.org/projects/nutmeg/" .
 
 <https://bio.tools/nutriNetwork> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3305,
@@ -337113,18 +352434,18 @@ Statistical tool for learning the structure of direct associations among variabl
 
 <https://bio.tools/nutrichem> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0990" ;
-            sc:name "Compound name" ;
-            sc:sameAs "http://edamontology.org/data_0990" ],
+            sc:additionalType "http://edamontology.org/data_1150" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Disease ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1150" ;
-            sc:name "Disease ID" ;
-            sc:sameAs "http://edamontology.org/data_1150" ] ;
+            sc:additionalType "http://edamontology.org/data_0990" ;
+            sc:encodingFormat "http://edamontology.org/format_1196" ;
+            sc:name "Compound name" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1082" ;
-            sc:name "Pathway or network identifier" ;
-            sc:sameAs "http://edamontology.org/data_1082" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1082" ;
+            sc:encodingFormat "http://edamontology.org/format_2333" ;
+            sc:name "Pathway or network identifier" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_3390 ;
     sc:citation <https://doi.org/10.1093/nar/gku724>,
@@ -337143,7 +352464,7 @@ Statistical tool for learning the structure of direct associations among variabl
     biotools:primaryContact "Irene Kouskoumvekaki" .
 
 <https://bio.tools/nvbio> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_3316 ;
@@ -337158,14 +352479,12 @@ Statistical tool for learning the structure of direct associations among variabl
 
 <https://bio.tools/nvt> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1270" ;
-            sc:name "Feature table" ;
-            sc:sameAs "http://edamontology.org/data_1270" ] ;
+            sc:additionalType "http://edamontology.org/data_1270" ;
+            sc:name "Feature table" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2259 ;
@@ -337184,14 +352503,14 @@ Statistical tool for learning the structure of direct associations among variabl
 
 <https://bio.tools/nwdisplay> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1910" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Image" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3293 ;
     sc:citation <https://doi.org/10.1093/nar/gkw343>,
@@ -337210,7 +352529,7 @@ Statistical tool for learning the structure of direct associations among variabl
     biotools:primaryContact "Galaxy Support Team" .
 
 <https://bio.tools/nxsensor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0654,
@@ -337232,7 +352551,7 @@ Statistical tool for learning the structure of direct associations among variabl
         "Peter Luykx" .
 
 <https://bio.tools/nxtrim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3168,
         edam:topic_3572 ;
@@ -337247,7 +352566,7 @@ Statistical tool for learning the structure of direct associations among variabl
     biotools:primaryContact "Anthony J. Cox" .
 
 <https://bio.tools/nyquist-artifact-correction-3d-epsi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -337265,7 +352584,7 @@ Statistical tool for learning the structure of direct associations among variabl
     biotools:primaryContact "Ti Xu" .
 
 <https://bio.tools/nzffdr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0769,
@@ -337283,7 +352602,7 @@ Statistical tool for learning the structure of direct associations among variabl
     sc:url "https://github.com/flee598/nzffdr" .
 
 <https://bio.tools/o-glcnacatlas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -337299,7 +352618,7 @@ Statistical tool for learning the structure of direct associations among variabl
     sc:url "https://oglcnac.org" .
 
 <https://bio.tools/o-glcnacpred-ii> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0601,
@@ -337316,8 +352635,30 @@ Statistical tool for learning the structure of direct associations among variabl
     sc:url "http://121.42.167.206/OGlcPred/" ;
     biotools:primaryContact "Cangzhi Jia" .
 
+<https://bio.tools/o-glycologue> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0152,
+        edam:topic_0749,
+        edam:topic_0804,
+        edam:topic_0821,
+        edam:topic_3292 ;
+    sc:citation <https://doi.org/10.1007/978-1-0716-1685-7_11>,
+        "pubmed:34611872" ;
+    sc:description "A Formal-Language-Based Generator of O-Glycosylation Networks." ;
+    sc:featureList edam:operation_0416,
+        edam:operation_0417,
+        edam:operation_3896 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "O-Glycologue" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://glycologue.org/o/" .
+
 <https://bio.tools/o-miner> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0602,
@@ -337337,8 +352678,27 @@ Statistical tool for learning the structure of direct associations among variabl
     sc:url "http://www.o-miner.org" ;
     biotools:primaryContact "Support" .
 
+<https://bio.tools/o-net> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_3384,
+        edam:topic_3452,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.3389/FNINS.2022.876065>,
+        "pmcid:PMC9201625",
+        "pubmed:35720715" ;
+    sc:description "A Novel Framework With Deep Fusion of CNN and Transformer for Simultaneous Segmentation and Classification." ;
+    sc:featureList edam:operation_3937 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "O-Net" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/ortonwang/O-Net" .
+
 <https://bio.tools/o2geosocial> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0625,
@@ -337359,7 +352719,7 @@ o2geosocial was developed to infer probabilistic transmission trees from routine
     sc:url "https://CRAN.R-project.org/package=o2geosocial" .
 
 <https://bio.tools/oRNAment> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0659,
@@ -337382,28 +352742,98 @@ Here, we developed a computational tool to enable the global mapping of putative
     sc:name "oRNAment" ;
     sc:url "http://rnabiology.ircm.qc.ca/oRNAment/" .
 
+<https://bio.tools/oakvar> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence variations" ] ;
+    bsc:output [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_3620" ;
+            sc:name "Annotation track" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Library",
+        "Web API",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0092,
+        edam:topic_0102,
+        edam:topic_0199,
+        edam:topic_0622 ;
+    sc:description "OakVar is a Python-based genomic variant analysis platform. It is a fork of OpenCRAVAT and further developed with newer visions." ;
+    sc:featureList edam:operation_0362,
+        edam:operation_3661,
+        edam:operation_3672 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "OakVar" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://oakvar.readthedocs.io> ;
+    sc:url "https://oakvar.com" .
+
+<https://bio.tools/oaob> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_3170,
+        edam:topic_3295,
+        edam:topic_3360,
+        edam:topic_3517 ;
+    sc:citation <https://doi.org/10.1093/DATABASE/BAAC052>,
+        "pmcid:PMC9254640",
+        "pubmed:35788653" ;
+    sc:description "Multi-omics molecular biomarkers and database of osteoarthritis." ;
+    sc:featureList edam:operation_2422,
+        edam:operation_3207,
+        edam:operation_3223 ;
+    sc:isAccessibleForFree true ;
+    sc:name "OAOB" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://ibi.zju.edu.cn/oaobdb/" .
+
+<https://bio.tools/oas> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0108,
+        edam:topic_2830,
+        edam:topic_3374,
+        edam:topic_3500,
+        edam:topic_3930 ;
+    sc:citation <https://doi.org/10.1002/PRO.4205>,
+        "pmcid:PMC8740823",
+        "pubmed:34655133" ;
+    sc:description "A diverse database of cleaned, annotated, and translated unpaired and paired antibody sequences." ;
+    sc:featureList edam:operation_2421 ;
+    sc:isAccessibleForFree true ;
+    sc:license "CC-BY-4.0" ;
+    sc:name "OAS" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://opig.stats.ox.ac.uk/webapps/oas/" .
+
 <https://bio.tools/oases> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0925" ;
-            sc:name "Sequence assembly" ;
-            sc:sameAs "http://edamontology.org/data_0925" ],
+            sc:additionalType "http://edamontology.org/data_0925" ;
+            sc:name "Sequence assembly" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0925" ;
-            sc:name "Sequence assembly" ;
-            sc:sameAs "http://edamontology.org/data_0925" ] ;
+            sc:additionalType "http://edamontology.org/data_0925" ;
+            sc:name "Sequence assembly" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3181" ;
-            sc:name "Sequence assembly report" ;
-            sc:sameAs "http://edamontology.org/data_3181" ],
+            sc:additionalType "http://edamontology.org/data_0925" ;
+            sc:name "Sequence assembly" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3495" ;
-            sc:name "RNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3495" ],
+            sc:additionalType "http://edamontology.org/data_3181" ;
+            sc:name "Sequence assembly report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0925" ;
-            sc:name "Sequence assembly" ;
-            sc:sameAs "http://edamontology.org/data_0925" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3495" ;
+            sc:name "RNA sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3170,
@@ -337425,7 +352855,7 @@ Here, we developed a computational tool to enable the global mapping of putative
         "Marcel Schulz" .
 
 <https://bio.tools/oasis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0099 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btv113> ;
@@ -337440,7 +352870,7 @@ Here, we developed a computational tool to enable the global mapping of putative
     biotools:primaryContact "Oasis Support" .
 
 <https://bio.tools/oasis-omics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0622,
@@ -337458,7 +352888,7 @@ Here, we developed a computational tool to enable the global mapping of putative
     biotools:primaryContact <https://orcid.org/0000-0001-5050-2074> .
 
 <https://bio.tools/oat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0084,
@@ -337475,7 +352905,7 @@ Here, we developed a computational tool to enable the global mapping of putative
     biotools:primaryContact "Jongsik Chun" .
 
 <https://bio.tools/ob_score> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0122,
         edam:topic_2275 ;
@@ -337489,7 +352919,7 @@ Here, we developed a computational tool to enable the global mapping of putative
     biotools:primaryContact "Geoffrey J. Barton" .
 
 <https://bio.tools/obadia> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -337507,7 +352937,7 @@ obaDIA takes a FASTA fromat protein sequence file and a fragment-level, peptide-
     sc:url "https://github.com/yjthu/obaDIA.git" .
 
 <https://bio.tools/obama> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2269,
@@ -337526,7 +352956,7 @@ A BEAST2 package for amino acid/protein site model averaging.""" ;
     sc:url "https://github.com/rbouckaert/obama" .
 
 <https://bio.tools/obcol> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0140,
         edam:topic_2229,
@@ -337545,7 +352975,7 @@ A BEAST2 package for amino acid/protein site model averaging.""" ;
     biotools:primaryContact "Nicholas A. Hamilton" .
 
 <https://bio.tools/obelisc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0625,
@@ -337564,16 +352994,39 @@ obelisc is a command line tool to perform two effective nonparametric linkage an
     sc:name "Obelisc" ;
     sc:url "https://github.com/qsonehara/Obelisc" .
 
+<https://bio.tools/obi> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_0194,
+        edam:topic_0769,
+        edam:topic_3299,
+        edam:topic_3966 ;
+    sc:citation <https://doi.org/10.1016/J.MEX.2022.101786>,
+        "pmcid:PMC9334345",
+        "pubmed:35910305" ;
+    sc:description "A computational tool for the analysis and systematization of the positive selection in proteins." ;
+    sc:featureList edam:operation_0324,
+        edam:operation_2422,
+        edam:operation_3435 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "OBI" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://anaconda.org/jcalvento/obi" .
+
 <https://bio.tools/obi-warp> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ] ;
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Mass spectrometry data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1916" ;
-            sc:name "Alignment" ;
-            sc:sameAs "http://edamontology.org/data_1916" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1916" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -337586,7 +353039,7 @@ obelisc is a command line tool to perform two effective nonparametric linkage an
     sc:url "http://obi-warp.sourceforge.net" .
 
 <https://bio.tools/obif> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -337604,7 +353057,7 @@ OBIF Package in R includes the analytical components of the Omics-Based Interact
     sc:url "http://www.github.com/evanslaboratory/OBIF" .
 
 <https://bio.tools/obitools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654,
@@ -337620,16 +353073,34 @@ OBIF Package in R includes the analytical components of the Omics-Based Interact
     sc:url "https://git.metabarcoding.org/obitools/obitools/wikis/home" ;
     biotools:primaryContact "Eric Coissac" .
 
+<https://bio.tools/obiwan-microbi> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0769,
+        edam:topic_3383,
+        edam:topic_3489 ;
+    sc:citation <https://doi.org/10.1101/2022.08.01.502297> ;
+    sc:description "OMERO-based integrated workflow for annotating microbes in the cloud." ;
+    sc:featureList edam:operation_3443,
+        edam:operation_3553 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "ObiWan-Microbi" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/hip-satomi/ObiWan-Microbi" .
+
 <https://bio.tools/objtables> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2526" ;
-            sc:name "Text data" ;
-            sc:sameAs "http://edamontology.org/data_2526" ] ;
+            sc:additionalType "http://edamontology.org/data_2526" ;
+            sc:encodingFormat "http://edamontology.org/format_3620" ;
+            sc:name "Text data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2526" ;
-            sc:name "Text data" ;
-            sc:sameAs "http://edamontology.org/data_2526" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2526" ;
+            sc:encodingFormat "http://edamontology.org/format_3620" ;
+            sc:name "Text data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library",
         "Web API",
@@ -337664,8 +353135,49 @@ ObjTables is ideal for supplementary materials of journal article, as well as fo
     sc:softwareVersion "1.0.0" ;
     sc:url "https://www.objtables.org" .
 
+<https://bio.tools/obo_foundry> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0089,
+        edam:topic_3071 ;
+    sc:citation <https://doi.org/10.1093/DATABASE/BAAB069>,
+        "pmcid:PMC8546234",
+        "pubmed:34697637" ;
+    sc:description "Community development of interoperable ontologies for the biological sciences" ;
+    sc:featureList edam:operation_2422,
+        edam:operation_3352 ;
+    sc:isAccessibleForFree true ;
+    sc:license "CC0-1.0" ;
+    sc:name "OBO Foundry" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://obofoundry.org/" .
+
+<https://bio.tools/ocat> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_2229,
+        edam:topic_3170,
+        edam:topic_3474,
+        edam:topic_3676 ;
+    sc:citation <https://doi.org/10.1186/S13059-022-02659-1>,
+        "pmcid:PMC9019955",
+        "pubmed:35443717" ;
+    sc:description "A unified framework to integrate and analyze single-cell RNA-seq data." ;
+    sc:featureList edam:operation_3223,
+        edam:operation_3436,
+        edam:operation_3891 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "OCAT" ;
+    sc:operatingSystem "Linux" ;
+    sc:url "https://github.com/bowang-lab/OCAT" .
+
 <https://bio.tools/occassess> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_3068,
@@ -337682,18 +353194,18 @@ ObjTables is ideal for supplementary materials of journal article, as well as fo
 
 <https://bio.tools/occugene> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2012" ;
-            sc:name "Sequence coordinates" ;
-            sc:sameAs "http://edamontology.org/data_2012" ],
+            sc:additionalType "http://edamontology.org/data_2012" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "Sequence coordinates" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1383" ;
-            sc:name "Sequence alignment (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1383" ] ;
+            sc:additionalType "http://edamontology.org/data_1383" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "Sequence alignment (nucleic acid)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2794" ;
-            sc:name "ORF ID" ;
-            sc:sameAs "http://edamontology.org/data_2794" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2794" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "ORF ID" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0621,
@@ -337713,7 +353225,7 @@ ObjTables is ideal for supplementary materials of journal article, as well as fo
     biotools:primaryContact "Oliver Will" .
 
 <https://bio.tools/occupeak> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3168,
@@ -337731,7 +353243,7 @@ ObjTables is ideal for supplementary materials of journal article, as well as fo
     biotools:primaryContact "Support" .
 
 <https://bio.tools/ocd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0176,
         edam:topic_0736,
@@ -337747,7 +353259,7 @@ ObjTables is ideal for supplementary materials of journal article, as well as fo
     biotools:primaryContact <https://orcid.org/0000-0002-0985-2299> .
 
 <https://bio.tools/ocean-barcode-atlas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0610,
@@ -337771,7 +353283,7 @@ ecological analyses (alpha and beta diversity) using graphical representations (
     sc:url "http://oba.mio.osupytheas.fr/ocean-atlas/" .
 
 <https://bio.tools/ocean-c> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0204,
@@ -337786,7 +353298,7 @@ ecological analyses (alpha and beta diversity) using graphical representations (
     biotools:primaryContact "Cheng Li" .
 
 <https://bio.tools/ocean-resistome> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3174,
         edam:topic_3308,
@@ -337799,7 +353311,7 @@ ecological analyses (alpha and beta diversity) using graphical representations (
     sc:url "https://github.com/rcuadrat/ocean_resistome" .
 
 <https://bio.tools/ocelot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0621,
@@ -337820,7 +353332,7 @@ ecological analyses (alpha and beta diversity) using graphical representations (
     sc:url "https://oscar.as.uky.edu" .
 
 <https://bio.tools/ocem> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -337839,7 +353351,7 @@ ecological analyses (alpha and beta diversity) using graphical representations (
     biotools:primaryContact <https://orcid.org/0000-0002-4951-5916> .
 
 <https://bio.tools/ocg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0602,
@@ -337857,14 +353369,13 @@ ecological analyses (alpha and beta diversity) using graphical representations (
 
 <https://bio.tools/ochem> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2851" ;
-            sc:name "Drug structure" ;
-            sc:sameAs "http://edamontology.org/data_2851" ] ;
+            sc:additionalType "http://edamontology.org/data_2851" ;
+            sc:encodingFormat "http://edamontology.org/format_1196" ;
+            sc:name "Drug structure" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API" ;
     sc:applicationSubCategory edam:topic_3332 ;
     sc:citation <https://doi.org/10.1007/s10822-011-9440-2>,
@@ -337881,7 +353392,7 @@ ecological analyses (alpha and beta diversity) using graphical representations (
     sc:url "http://www.ochem.eu" .
 
 <https://bio.tools/ocimido> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Ontology" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0218,
@@ -337905,7 +353416,7 @@ ecological analyses (alpha and beta diversity) using graphical representations (
     sc:url "https://github.com/sap218/ocimido" .
 
 <https://bio.tools/ocnet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_3299,
@@ -337922,7 +353433,7 @@ Generate and analyze Optimal Channel Networks (OCNs): oriented spanning trees re
     sc:url "https://CRAN.R-project.org/package=OCNet" .
 
 <https://bio.tools/ocplus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -337942,7 +353453,7 @@ Generate and analyze Optimal Channel Networks (OCNs): oriented spanning trees re
     biotools:primaryContact "Alexander Ploner" .
 
 <https://bio.tools/ocr_text_and_update_opends> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "Performs OCR on regions of interest specified in an openDS object, and updates the openDS regions with transcriptions" ;
     sc:featureList edam:operation_1812,
         edam:operation_3443 ;
@@ -337952,7 +353463,7 @@ Generate and analyze Optimal Channel Networks (OCNs): oriented spanning trees re
     sc:url "http://sdr.nhm.ac.uk" .
 
 <https://bio.tools/ocsana> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_2259 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btt195>,
@@ -337968,7 +353479,7 @@ Generate and analyze Optimal Channel Networks (OCNs): oriented spanning trees re
     biotools:primaryContact <http://orcid.org/0000-0003-3970-2619> .
 
 <https://bio.tools/ocsestdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0780 ;
@@ -337988,7 +353499,7 @@ Generate and analyze Optimal Channel Networks (OCNs): oriented spanning trees re
     sc:url "http://ocri-genomics.org/ocsESTdb/" .
 
 <https://bio.tools/octadist> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2828,
         edam:topic_3068,
@@ -338007,14 +353518,12 @@ Generate and analyze Optimal Channel Networks (OCNs): oriented spanning trees re
 
 <https://bio.tools/octanol> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1507" ;
-            sc:name "Amino acid index (White-Wimley data)" ;
-            sc:sameAs "http://edamontology.org/data_1507" ] ;
+            sc:additionalType "http://edamontology.org/data_1507" ;
+            sc:name "Amino acid index (White-Wimley data)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1522" ;
-            sc:name "Protein sequence hydropathy plot" ;
-            sc:sameAs "http://edamontology.org/data_1522" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1522" ;
+            sc:name "Protein sequence hydropathy plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0123 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -338044,7 +353553,7 @@ Generate and analyze Optimal Channel Networks (OCNs): oriented spanning trees re
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/octanol.html" .
 
 <https://bio.tools/octid> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3382,
@@ -338064,14 +353573,12 @@ Generate and analyze Optimal Channel Networks (OCNs): oriented spanning trees re
 
 <https://bio.tools/octopus> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:name "Protein sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:name "Protein features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btn221> ;
@@ -338087,7 +353594,7 @@ Generate and analyze Optimal Channel Networks (OCNs): oriented spanning trees re
     sc:url "http://octopus.cbr.su.se/" .
 
 <https://bio.tools/octopus-toolkit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3168 ;
@@ -338109,7 +353616,7 @@ Generate and analyze Optimal Channel Networks (OCNs): oriented spanning trees re
     sc:url "http://octopus-toolkit2.readthedocs.io/en/latest/" .
 
 <https://bio.tools/octopus_hap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2533 ;
     sc:citation <https://doi.org/10.1038/s41587-021-00861-3> ;
@@ -338120,7 +353627,7 @@ Generate and analyze Optimal Channel Networks (OCNs): oriented spanning trees re
     sc:url "https://github.com/luntergroup/octopus" .
 
 <https://bio.tools/octseg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -338137,7 +353644,7 @@ Generate and analyze Optimal Channel Networks (OCNs): oriented spanning trees re
     biotools:primaryContact "Markus Mayer" .
 
 <https://bio.tools/octsurf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0166,
@@ -338151,7 +353658,7 @@ Generate and analyze Optimal Channel Networks (OCNs): oriented spanning trees re
     biotools:primaryContact <https://orcid.org/0000-0003-0887-0767> .
 
 <https://bio.tools/odMLtables> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_3304,
@@ -338183,7 +353690,7 @@ An interface to convert odML structures to and from table-like representations,
     sc:url "http://www.g-node.org/odml" .
 
 <https://bio.tools/odb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0114,
         edam:topic_0203,
@@ -338206,7 +353713,7 @@ An interface to convert odML structures to and from table-like representations,
     biotools:primaryContact "Shujiro Okuda" .
 
 <https://bio.tools/odc-tbi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_0769,
@@ -338226,14 +353733,12 @@ An interface to convert odML structures to and from table-like representations,
 
 <https://bio.tools/oddcomp> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2886" ;
-            sc:name "Protein sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2886" ],
+            sc:additionalType "http://edamontology.org/data_2886" ;
+            sc:name "Protein sequence record" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1261" ;
-            sc:name "Sequence composition report" ;
-            sc:sameAs "http://edamontology.org/data_1261" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1261" ;
+            sc:name "Sequence composition report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0157 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -338263,7 +353768,7 @@ An interface to convert odML structures to and from table-like representations,
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/oddcomp.html" .
 
 <https://bio.tools/ode45-cardiac-pacemaker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_2229,
@@ -338280,8 +353785,16 @@ An interface to convert odML structures to and from table-like representations,
     sc:url "https://www.mathworks.com/matlabcentral/fileexchange/25486-application-of-method-ode45-matlab-for-model-pacemaker-vi1-of-cardiac-cells" ;
     biotools:primaryContact "Dit Papa Lamine ndao" .
 
+<https://bio.tools/odefy> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:citation <https://doi.org/10.1186/1471-2105-11-233>,
+        <https://doi.org/10.1186/1752-0509-3-98> ;
+    sc:description "MATLAB- and Octave-compatible toolbox for the automated transformation of Boolean models into systems of ordinary differential equations. Models can be created from sets of Boolean equations or graph representations of Boolean networks." ;
+    sc:name "Odefy" ;
+    sc:url "https://www.helmholtz-munich.de/icb/software/odefy/index.html" .
+
 <https://bio.tools/odg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0797,
         edam:topic_3366 ;
@@ -338296,8 +353809,30 @@ An interface to convert odML structures to and from table-like representations,
     sc:url "https://github.com/jguhlin/odg" ;
     biotools:primaryContact "Joseph Guhlin" .
 
+<https://bio.tools/odgi> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0199,
+        edam:topic_0621,
+        edam:topic_0622,
+        edam:topic_0654,
+        edam:topic_0780 ;
+    sc:citation <https://doi.org/10.1101/2021.11.10.467921> ;
+    sc:description "Optimized dynamic genome graph implementation: a toolkit for understanding pangenome graphs" ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3745,
+        edam:operation_3802 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "ODGI" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://odgi.readthedocs.io> ;
+    sc:url "https://github.com/pangenome/odgi" .
+
 <https://bio.tools/odin> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0622 ;
@@ -338308,8 +353843,27 @@ An interface to convert odML structures to and from table-like representations,
     sc:url "http://costalab.org/publications-2/odin/" ;
     biotools:primaryContact "Ivan G Costa" .
 
+<https://bio.tools/odisea> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0089,
+        edam:topic_0625,
+        edam:topic_0634 ;
+    sc:citation <https://doi.org/10.1016/J.JMB.2022.167619>,
+        "pubmed:35504357" ;
+    sc:description "The Organ-Disease Annotations (ODiseA) Database of Hereditary Diseases and Inflicted Tissues." ;
+    sc:featureList edam:operation_0224,
+        edam:operation_3461 ;
+    sc:isAccessibleForFree true ;
+    sc:name "ODiseA" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://netbio.bgu.ac.il/odisea" .
+
 <https://bio.tools/odm-clinical-data-generator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3063,
         edam:topic_3263,
         edam:topic_3303,
@@ -338324,7 +353878,7 @@ An interface to convert odML structures to and from table-like representations,
     sc:url "https://cdgen.uni-muenster.de" .
 
 <https://bio.tools/odorify> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2258,
@@ -338348,7 +353902,7 @@ An interface to convert odML structures to and from table-like representations,
     sc:url "https://odorify.ahujalab.iiitd.edu.in/olfy/" .
 
 <https://bio.tools/odseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0077,
@@ -338368,33 +353922,32 @@ An interface to convert odML structures to and from table-like representations,
     biotools:primaryContact "José Jiménez" .
 
 <https://bio.tools/odysseyoa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "it is a simple OA." ;
     sc:name "odysseyOA" ;
     sc:url "https://github.com/Yu606/odyssey" .
 
 <https://bio.tools/odysseyoa1> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1916" ;
-            sc:name "Alignment" ;
-            sc:sameAs "http://edamontology.org/data_1916" ],
+            sc:additionalType "http://edamontology.org/data_3108" ;
+            sc:name "Experimental measurement" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3108" ;
-            sc:name "Experimental measurement" ;
-            sc:sameAs "http://edamontology.org/data_3108" ],
+            sc:additionalType "http://edamontology.org/data_1916" ;
+            sc:encodingFormat "http://edamontology.org/format_3000" ;
+            sc:name "Alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3707" ;
-            sc:name "Biodiversity data" ;
-            sc:sameAs "http://edamontology.org/data_3707" ],
+            sc:additionalType "http://edamontology.org/data_0914" ;
+            sc:encodingFormat "http://edamontology.org/format_2350" ;
+            sc:name "Codon usage data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0914" ;
-            sc:name "Codon usage data" ;
-            sc:sameAs "http://edamontology.org/data_0914" ] ;
+            sc:additionalType "http://edamontology.org/data_3707" ;
+            sc:encodingFormat "http://edamontology.org/format_2333" ;
+            sc:name "Biodiversity data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1916" ;
-            sc:name "Alignment" ;
-            sc:sameAs "http://edamontology.org/data_1916" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1916" ;
+            sc:encodingFormat "http://edamontology.org/format_2333" ;
+            sc:name "Alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "3128391233213" ;
     sc:featureList edam:operation_0302,
         edam:operation_0303,
@@ -338403,7 +353956,7 @@ An interface to convert odML structures to and from table-like representations,
     sc:url "https://github.com/Yu606/odyssey" .
 
 <https://bio.tools/oefinder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0099,
@@ -338420,7 +353973,7 @@ An interface to convert odML structures to and from table-like representations,
         "Stewart R" .
 
 <https://bio.tools/off-spotter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0654,
@@ -338437,7 +353990,7 @@ An interface to convert odML structures to and from table-like representations,
     biotools:primaryContact "Isidore Rigoutsos" .
 
 <https://bio.tools/off-target_pipeline> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_2259,
         edam:topic_3314,
@@ -338451,7 +354004,7 @@ An interface to convert odML structures to and from table-like representations,
     sc:url "https://sites.google.com/site/offtargetpipeline/home" .
 
 <https://bio.tools/offsampleai> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3172,
         edam:topic_3382,
@@ -338471,7 +354024,7 @@ Recognizing off-sample mass spectrometry images with machine and deep learning."
     sc:url "https://github.com/metaspace2020/offsample" .
 
 <https://bio.tools/ogda> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0621,
@@ -338491,7 +354044,7 @@ Algae is the earliest evolutionary biological group on the earth, are thought to
     sc:url "http://ogda.ytu.edu.cn/" .
 
 <https://bio.tools/ogdraw> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0622,
@@ -338509,7 +354062,7 @@ Algae is the earliest evolutionary biological group on the earth, are thought to
     biotools:primaryContact "Ralph Bock" .
 
 <https://bio.tools/ogee> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0114,
         edam:topic_0203,
@@ -338531,7 +354084,7 @@ Algae is the earliest evolutionary biological group on the earth, are thought to
     biotools:primaryContact "Wei-Hua Chen" .
 
 <https://bio.tools/ogfe_raac> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0634,
@@ -338554,7 +354107,7 @@ Algae is the earliest evolutionary biological group on the earth, are thought to
     sc:url "http://bioinfor.imu.edu.cn/ogferaac" .
 
 <https://bio.tools/ognm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0176,
@@ -338575,7 +354128,7 @@ Algae is the earliest evolutionary biological group on the earth, are thought to
     biotools:primaryContact "Hongchun Li" .
 
 <https://bio.tools/ogp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
@@ -338591,7 +354144,7 @@ Numerous studies on cancer, biopharmaceuticals, and clinical trials have necessi
     sc:url "http://www.oglyp.org/" .
 
 <https://bio.tools/ogsa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0204,
@@ -338611,7 +354164,7 @@ Numerous studies on cancer, biopharmaceuticals, and clinical trials have necessi
     biotools:primaryContact "Michael F. Ochs" .
 
 <https://bio.tools/ogt-pin> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0108,
@@ -338634,7 +354187,7 @@ Numerous studies on cancer, biopharmaceuticals, and clinical trials have necessi
     sc:url "https://oglcnac.org/ogt-pin/" .
 
 <https://bio.tools/ogtree_2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0194,
@@ -338655,7 +354208,7 @@ Numerous studies on cancer, biopharmaceuticals, and clinical trials have necessi
     biotools:primaryContact "Dr. Chin Lung Lu" .
 
 <https://bio.tools/ogttmetrics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0152,
         edam:topic_3360,
@@ -338669,7 +354222,7 @@ Numerous studies on cancer, biopharmaceuticals, and clinical trials have necessi
     biotools:primaryContact "VJ Carey" .
 
 <https://bio.tools/ohana> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_2885,
@@ -338685,7 +354238,7 @@ Numerous studies on cancer, biopharmaceuticals, and clinical trials have necessi
     biotools:primaryContact "Jade Cheng" .
 
 <https://bio.tools/ohd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_3063,
@@ -338705,7 +354258,7 @@ We need a standardized approach that enables efficient access to information in
     sc:url "https://github.com/oral-health-and-disease-ontologies/ohd-ontology" .
 
 <https://bio.tools/ohdsi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3063,
         edam:topic_3303,
@@ -338722,7 +354275,7 @@ We need a standardized approach that enables efficient access to information in
     sc:url "https://github.com/OHDSI/" .
 
 <https://bio.tools/ohm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0154,
@@ -338747,14 +354300,13 @@ To map allosteric communications, we use percolation theory to identify connecti
 
 <https://bio.tools/oi_gene> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0957" ;
-            sc:name "Database metadata" ;
-            sc:sameAs "http://edamontology.org/data_0957" ] ;
+            sc:additionalType "http://edamontology.org/data_0957" ;
+            sc:name "Database metadata" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Sequence variations" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0634 ;
     sc:citation <https://doi.org/10.1016/j.ajhg.2012.02.026>,
@@ -338771,7 +354323,7 @@ To map allosteric communications, we use percolation theory to identify connecti
     biotools:primaryContact "Raymond Dalgleish" .
 
 <https://bio.tools/oipcq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -338785,26 +354337,29 @@ OIPCQ requires the functions of cmi and Compare, and OIPCQ2 requires the functio
     sc:name "OIPCQ" ;
     sc:url "https://github.com/haammim/OIPCQ-and-OIPCQ2" .
 
-<https://bio.tools/olanzapine> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0202,
-        edam:topic_3068,
-        edam:topic_3375,
-        edam:topic_3379,
-        edam:topic_3407 ;
-    sc:citation <https://doi.org/10.1080/00325481.2019.1701823>,
-        "pubmed:31813311" ;
-    sc:description """a review of recent olanzapine research.
-
-Objective: Based on a substantial literature, olanzapine appears to be one of the most efficacious antipsychotics marketed in the United States, with only clozapine clearly more advantageous. However, olanzapine is marred by an equally substantial literature demonstrating a metabolic burden of olanzapine, particularly for weight gain. With the publication of successful strategies to limit olanzapine induced weight gain, a reassessment of the clinical utility of olanzapine appears warranted. The purpose of this paper is to review recent evidence for olanzapine, highlighting use in both schizophrenia and other conditions, safety and supporting the use of olanzapine above 20 mg day, focusing on studies published since our previous reviews in 2008 and 2009.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'New discoveries old drug'""" ;
-    sc:name "olanzapine" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31813311" .
+<https://bio.tools/okseqhmm> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0621,
+        edam:topic_0749,
+        edam:topic_3127,
+        edam:topic_3170,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.1101/2022.01.12.476022> ;
+    sc:description "A R package for profiling OK-Seq data to study the genome-wide DNA Replication Fork Directionality (RFD)." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_3359,
+        edam:operation_3435 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "OKseqHMM" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/CL-CHEN-Lab/OK-Seq" .
 
 <https://bio.tools/olbp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_3382 ;
@@ -338815,7 +354370,7 @@ Objective: Based on a substantial literature, olanzapine appears to be one of th
     sc:url "https://github.com/MathLee/OLBPNet4PFOS" .
 
 <https://bio.tools/olcs-ranker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -338834,7 +354389,7 @@ Post-database search is a key procedure in peptide identification with tandem ma
     sc:url "http://161.6.5.181:8000/olcs-ranker/" .
 
 <https://bio.tools/olego> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3170 ;
@@ -338856,7 +354411,7 @@ Post-database search is a key procedure in peptide identification with tandem ma
     biotools:primaryContact "Chaolin Zhang" .
 
 <https://bio.tools/olfactionbase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0154,
@@ -338875,18 +354430,18 @@ Post-database search is a key procedure in peptide identification with tandem ma
 
 <https://bio.tools/oli2go> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3671" ;
-            sc:name "Text" ;
-            sc:sameAs "http://edamontology.org/data_3671" ] ;
+            sc:additionalType "http://edamontology.org/data_3671" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Text" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2955" ;
-            sc:name "Sequence report" ;
-            sc:sameAs "http://edamontology.org/data_2955" ],
+            sc:additionalType "http://edamontology.org/data_2955" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Sequence report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1234" ;
-            sc:name "Sequence set (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1234" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1234" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence set (nucleic acid)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0632,
         edam:topic_3673 ;
@@ -338901,7 +354456,7 @@ Post-database search is a key procedure in peptide identification with tandem ma
     sc:url "http://oli2go.ait.ac.at/" .
 
 <https://bio.tools/olicheck> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0621,
@@ -338913,8 +354468,29 @@ Post-database search is a key procedure in peptide identification with tandem ma
     sc:operatingSystem "Windows" ;
     sc:url "http://www.genomic.ch/software.php" .
 
+<https://bio.tools/olida> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0219,
+        edam:topic_0634,
+        edam:topic_3068,
+        edam:topic_3407 ;
+    sc:citation <https://doi.org/10.1093/DATABASE/BAAC023>,
+        "pmcid:PMC9216476",
+        "pubmed:35411390" ;
+    sc:description "Scaling up oligogenic diseases research with OLIDA." ;
+    sc:featureList edam:operation_2421,
+        edam:operation_2422,
+        edam:operation_3227 ;
+    sc:isAccessibleForFree true ;
+    sc:name "OLIDA" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://olida.ibsquare.be" .
+
 <https://bio.tools/oligator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0121,
@@ -338932,7 +354508,7 @@ Post-database search is a key procedure in peptide identification with tandem ma
     biotools:primaryContact <https://orcid.org/0000-0002-1248-6701> .
 
 <https://bio.tools/oligo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0080 ;
@@ -338953,14 +354529,14 @@ Post-database search is a key procedure in peptide identification with tandem ma
 
 <https://bio.tools/oligo-analysis> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0850" ;
-            sc:name "Sequence set" ;
-            sc:sameAs "http://edamontology.org/data_0850" ] ;
+            sc:additionalType "http://edamontology.org/data_0850" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence set" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1353" ;
-            sc:name "Sequence motif" ;
-            sc:sameAs "http://edamontology.org/data_1353" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1353" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Sequence motif" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application",
         "Web service" ;
@@ -338988,7 +354564,7 @@ Post-database search is a key procedure in peptide identification with tandem ma
     biotools:primaryContact <https://orcid.org/0000-0002-8799-8584> .
 
 <https://bio.tools/oligoarray> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0621,
@@ -339009,7 +354585,7 @@ Post-database search is a key procedure in peptide identification with tandem ma
     biotools:primaryContact "Jean-Marie Rouillard" .
 
 <https://bio.tools/oligoarrayaux> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:description "OligoArrayAux is an auxilliary package designed for use with the OligoArray software.  The package consists of several C programs and Perl scripts for performing energy minimization calculations on nucleic acid sequences.  OligoArrayAux is a subset of the UNAFold package, which calculates partition functions as well as minimum energies for a full ensemble of species for one or two nucleic acid sequences." ;
@@ -339023,7 +354599,7 @@ Post-database search is a key procedure in peptide identification with tandem ma
     sc:url "http://mfold.rna.albany.edu/?q=DINAMelt/OligoArrayAux" .
 
 <https://bio.tools/oligocalc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0099,
@@ -339043,7 +354619,7 @@ Post-database search is a key procedure in peptide identification with tandem ma
     biotools:primaryContact "Warren A. Kibbe" .
 
 <https://bio.tools/oligoclasses> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -339064,7 +354640,7 @@ Post-database search is a key procedure in peptide identification with tandem ma
         "Robert Scharpf" .
 
 <https://bio.tools/oligocounter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654,
@@ -339082,7 +354658,7 @@ Post-database search is a key procedure in peptide identification with tandem ma
     biotools:primaryContact "Davenport, C. F" .
 
 <https://bio.tools/oligoheatmap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0097,
@@ -339101,7 +354677,7 @@ Post-database search is a key procedure in peptide identification with tandem ma
     sc:url "http://www.bioinfomed.fr/__Tools/ohm/" .
 
 <https://bio.tools/oligomap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_3168 ;
@@ -339115,7 +354691,7 @@ Post-database search is a key procedure in peptide identification with tandem ma
     biotools:primaryContact "Mihaela Zavolan" .
 
 <https://bio.tools/oligominerapp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0099,
@@ -339135,7 +354711,7 @@ Post-database search is a key procedure in peptide identification with tandem ma
     sc:url "http://oligominerapp.org" .
 
 <https://bio.tools/oligonucleotide_search> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0622,
@@ -339150,7 +354726,7 @@ Post-database search is a key procedure in peptide identification with tandem ma
     sc:url "http://compbio.med.wayne.edu/software/index.html" .
 
 <https://bio.tools/oligoprime> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0607,
         edam:topic_0632,
@@ -339172,7 +354748,7 @@ Post-database search is a key procedure in peptide identification with tandem ma
     sc:url "https://github.com/OligoPrime" .
 
 <https://bio.tools/oligowalk> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0099,
@@ -339193,14 +354769,14 @@ Post-database search is a key procedure in peptide identification with tandem ma
 
 <https://bio.tools/oligowiz> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2955" ;
-            sc:name "Sequence report" ;
-            sc:sameAs "http://edamontology.org/data_2955" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2955" ;
+            sc:encodingFormat "http://edamontology.org/format_2333" ;
+            sc:name "Sequence report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_3365 ;
@@ -339219,7 +354795,7 @@ Post-database search is a key procedure in peptide identification with tandem ma
     biotools:primaryContact "Henrik Bjorn Nielsen" .
 
 <https://bio.tools/olin> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -339241,7 +354817,7 @@ Post-database search is a key procedure in peptide identification with tandem ma
     biotools:primaryContact <http://orcid.org/0000-0002-6245-8071> .
 
 <https://bio.tools/olingui> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -339261,7 +354837,7 @@ Post-database search is a key procedure in peptide identification with tandem ma
     biotools:primaryContact <http://orcid.org/0000-0002-6245-8071> .
 
 <https://bio.tools/ols> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0089 ;
@@ -339293,14 +354869,12 @@ Post-database search is a key procedure in peptide identification with tandem ma
 
 <https://bio.tools/ols-dialog> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2353" ;
-            sc:name "Ontology data" ;
-            sc:sameAs "http://edamontology.org/data_2353" ] ;
+            sc:additionalType "http://edamontology.org/data_2353" ;
+            sc:name "Ontology data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2353" ;
-            sc:name "Ontology data" ;
-            sc:sameAs "http://edamontology.org/data_2353" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2353" ;
+            sc:name "Ontology data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_3344 ;
@@ -339317,7 +354891,7 @@ Post-database search is a key procedure in peptide identification with tandem ma
     sc:url "http://compomics.github.io/projects/ols-dialog.html" .
 
 <https://bio.tools/ols_dialog> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0219,
@@ -339333,7 +354907,7 @@ Post-database search is a key procedure in peptide identification with tandem ma
     biotools:primaryContact "Harald Barsnes" .
 
 <https://bio.tools/olympus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3301,
@@ -339352,22 +354926,18 @@ Post-database search is a key procedure in peptide identification with tandem ma
 
 <https://bio.tools/oma> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0842" ;
-            sc:name "Identifier" ;
-            sc:sameAs "http://edamontology.org/data_0842" ],
+            sc:additionalType "http://edamontology.org/data_2974" ;
+            sc:name "Protein sequence (raw)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3021" ;
-            sc:name "UniProt accession" ;
-            sc:sameAs "http://edamontology.org/data_3021" ],
+            sc:additionalType "http://edamontology.org/data_3671" ;
+            sc:name "Text" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3671" ;
-            sc:name "Text" ;
-            sc:sameAs "http://edamontology.org/data_3671" ],
+            sc:additionalType "http://edamontology.org/data_0842" ;
+            sc:name "Identifier" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2974" ;
-            sc:name "Protein sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_2974" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3021" ;
+            sc:name "UniProt accession" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Desktop application",
         "Web application" ;
@@ -339388,7 +354958,7 @@ Post-database search is a key procedure in peptide identification with tandem ma
     biotools:primaryContact "Christophe Dessimoz" .
 
 <https://bio.tools/omadb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0085,
         edam:topic_0797,
@@ -339409,7 +354979,7 @@ Post-database search is a key procedure in peptide identification with tandem ma
         "Klara Kaleb" .
 
 <https://bio.tools/omamer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0194,
@@ -339427,8 +354997,75 @@ OMAmer is a novel alignment-free protein family assignment method, which limits
     sc:name "OMAmer" ;
     sc:url "https://github.com/DessimozLab/omamer" .
 
+<https://bio.tools/omamo> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0602,
+        edam:topic_0621,
+        edam:topic_2259,
+        edam:topic_3068,
+        edam:topic_3500 ;
+    sc:citation <https://doi.org/10.1101/2021.11.04.467067> ;
+    sc:description "OMAMO is a tool that suggests the best model organism to study a biological process based on orthologous relationship between a species and human." ;
+    sc:featureList edam:operation_2421,
+        edam:operation_2422,
+        edam:operation_3928 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "OMAMO" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/DessimozLab/omamo" .
+
+<https://bio.tools/omaru> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0769,
+        edam:topic_3174,
+        edam:topic_3293,
+        edam:topic_3517,
+        edam:topic_3697 ;
+    sc:citation <https://doi.org/10.1093/NARGAB/LQAC019>,
+        "pmcid:PMC8900191",
+        "pubmed:35265838" ;
+    sc:description "OMARU (Omnibus metagenome-wide association study with robustness) is a new end-to-end analysis workflow that covers a wide range of microbiome analysis from phylogenetic and functional profiling to case-control metagenome-wide association studies (MWAS)." ;
+    sc:featureList edam:operation_0324,
+        edam:operation_2436,
+        edam:operation_3216,
+        edam:operation_3891 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Other" ;
+    sc:name "OMARU" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/toshi-kishikawa/OMARU" .
+
+<https://bio.tools/ome-ngff> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0749,
+        edam:topic_3372,
+        edam:topic_3383,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1038/S41592-021-01326-W>,
+        "pmcid:PMC8648559",
+        "pubmed:34845388" ;
+    sc:description "A next-generation file format for expanding bioimaging data-access strategies." ;
+    sc:featureList edam:operation_0335,
+        edam:operation_0337,
+        edam:operation_2422 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Apache-2.0" ;
+    sc:name "OME-NGFF" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://ngff.openmicroscopy.org/latest/" .
+
 <https://bio.tools/omeclust> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0634,
@@ -339447,7 +355084,7 @@ OMAmer is a novel alignment-free protein family assignment method, which limits
         <https://orcid.org/0000-0003-4956-2429> .
 
 <https://bio.tools/omega> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3174 ;
@@ -339461,7 +355098,7 @@ OMAmer is a novel alignment-free protein family assignment method, which limits
     biotools:primaryContact "Chongle Pan" .
 
 <https://bio.tools/omega-m> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Library" ;
     sc:applicationSubCategory edam:topic_0749,
@@ -339484,7 +355121,7 @@ The purpose of OMEGA is twofold. First it is designed to allow easy, fast and ef
     sc:url "https://github.com/villekf/OMEGA" .
 
 <https://bio.tools/omegagene> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0176,
         edam:topic_0203,
@@ -339502,8 +355139,29 @@ myPresto/omegagene is a Molecular Dynamics package (more description here).""" ;
     sc:name "omegagene" ;
     sc:url "https://github.com/kotakasahara/omegagene" .
 
+<https://bio.tools/omen> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0199,
+        edam:topic_0203,
+        edam:topic_2269,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC312>,
+        "pubmed:35552634" ;
+    sc:description "Network-based Driver Gene Identification using Mutual Exclusivity." ;
+    sc:featureList edam:operation_3435,
+        edam:operation_3695,
+        edam:operation_3927 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "OMEN" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://www.github.com/DriesVanDaele/OMEN" .
+
 <https://bio.tools/omero> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_3382 ;
@@ -339518,7 +355176,7 @@ myPresto/omegagene is a Molecular Dynamics package (more description here).""" ;
     sc:url "http://www.openmicroscopy.org/omero/" .
 
 <https://bio.tools/omero-lib> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0780,
         edam:topic_3071,
@@ -339535,8 +355193,30 @@ Abstract As technical developments in omics and biomedical imaging drive the inc
     sc:name "OMERO-lib" ;
     sc:url "https://github.com/qbicsoftware/omero-lib" .
 
+<https://bio.tools/omero_image> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Plug-in" ;
+    sc:applicationSubCategory edam:topic_0769,
+        edam:topic_3277,
+        edam:topic_3382,
+        edam:topic_3489 ;
+    sc:citation <https://doi.org/10.12688/F1000RESEARCH.110385.1>,
+        "pmcid:PMC9171289",
+        "pubmed:35685190" ;
+    sc:description "Easing batch image processing from OMERO." ;
+    sc:featureList edam:operation_1812,
+        edam:operation_3443,
+        edam:operation_3552 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-2.0" ;
+    sc:name "OMERO" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/GReD-Clermont/omero_batch-plugin" .
+
 <https://bio.tools/omia> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0625 ;
     sc:citation <https://doi.org/10.1093/nar/gkj152>,
@@ -339554,7 +355234,7 @@ Abstract As technical developments in omics and biomedical imaging drive the inc
     biotools:primaryContact <http://orcid.org/0000-0002-9178-3965> .
 
 <https://bio.tools/omicabel> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3517 ;
     sc:citation <https://doi.org/10.12688/F1000RESEARCH.4867.1>,
@@ -339571,18 +355251,18 @@ Abstract As technical developments in omics and biomedical imaging drive the inc
 
 <https://bio.tools/omicade4> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Gene expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ] ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_1637" ;
+            sc:name "Gene expression data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ],
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Plot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Image" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0091,
@@ -339607,7 +355287,7 @@ Abstract As technical developments in omics and biomedical imaging drive the inc
     biotools:primaryContact "Chen Meng" .
 
 <https://bio.tools/omicbrowse> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0622 ;
     sc:citation "pubmed:19528066" ;
@@ -339623,38 +355303,38 @@ Abstract As technical developments in omics and biomedical imaging drive the inc
 
 <https://bio.tools/omiccircos> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2019" ;
-            sc:name "Map data" ;
-            sc:sameAs "http://edamontology.org/data_2019" ],
+            sc:additionalType "http://edamontology.org/data_2082" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "Matrix" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2012" ;
-            sc:name "Sequence coordinates" ;
-            sc:sameAs "http://edamontology.org/data_2012" ],
+            sc:additionalType "http://edamontology.org/data_1383" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "Sequence alignment (nucleic acid)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1383" ;
-            sc:name "Sequence alignment (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1383" ],
+            sc:additionalType "http://edamontology.org/data_2019" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "Map data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2082" ;
-            sc:name "Matrix" ;
-            sc:sameAs "http://edamontology.org/data_2082" ] ;
+            sc:additionalType "http://edamontology.org/data_2012" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "Sequence coordinates" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1636" ;
-            sc:name "Heat map" ;
-            sc:sameAs "http://edamontology.org/data_1636" ],
+            sc:additionalType "http://edamontology.org/data_1636" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Heat map" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ],
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ],
+            sc:additionalType "http://edamontology.org/data_1772" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Score" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1772" ;
-            sc:name "Score" ;
-            sc:sameAs "http://edamontology.org/data_1772" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -339675,7 +355355,7 @@ Abstract As technical developments in omics and biomedical imaging drive the inc
     biotools:primaryContact "Ying Hu" .
 
 <https://bio.tools/omickriging> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3053,
@@ -339691,7 +355371,7 @@ Abstract As technical developments in omics and biomedical imaging drive the inc
     biotools:primaryContact "Hae Kyung Im" .
 
 <https://bio.tools/omicloupe> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0203,
@@ -339711,7 +355391,7 @@ Abstract As technical developments in omics and biomedical imaging drive the inc
     biotools:primaryContact <https://orcid.org/0000-0002-0710-9792> .
 
 <https://bio.tools/omicplotr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3168,
@@ -339734,7 +355414,7 @@ Abstract As technical developments in omics and biomedical imaging drive the inc
     biotools:primaryContact "Daniel Giguere" .
 
 <https://bio.tools/omicrexposome> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0203,
@@ -339760,7 +355440,7 @@ Abstract As technical developments in omics and biomedical imaging drive the inc
     biotools:primaryContact "Carles Hernandez-Ferrer" .
 
 <https://bio.tools/omics-data-paper-shinyapp-golem> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0769,
@@ -339781,7 +355461,7 @@ In addition to running this tool to use the workflow, it can be used via a web a
     biotools:primaryContact <https://orcid.org/0000-0002-8083-6048> .
 
 <https://bio.tools/omics-playground> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -339805,7 +355485,7 @@ Omics Playground is a comprehensive self-service analytics platform for the visu
     sc:url "https://github.com/bigomics/omicsplayground" .
 
 <https://bio.tools/omics_bioanalytics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0602,
@@ -339823,7 +355503,7 @@ Omics BioAnalytics is a Shiny app that perform common bioinformatics analyses su
     sc:url "https://amritsingh.shinyapps.io/omicsBioAnalytics/" .
 
 <https://bio.tools/omics_integrator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0203,
@@ -339838,7 +355518,7 @@ Omics BioAnalytics is a Shiny app that perform common bioinformatics analyses su
     sc:url "http://fraenkel-nsf.csbi.mit.edu/omicsintegrator/" .
 
 <https://bio.tools/omics_pipe> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_0769,
@@ -339855,7 +355535,7 @@ Omics BioAnalytics is a Shiny app that perform common bioinformatics analyses su
     sc:url "http://sulab.org/tools/omics-pipe/" .
 
 <https://bio.tools/omicsanalyst> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0602,
@@ -339876,7 +355556,7 @@ Omics BioAnalytics is a Shiny app that perform common bioinformatics analyses su
     biotools:primaryContact <https://orcid.org/0000-0003-2040-2624> .
 
 <https://bio.tools/omicsdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0780,
@@ -339897,7 +355577,7 @@ Accelerating in-silico gene discovery in plants, animals and microbes.""" ;
     sc:url "http://pathogens.omicsdb.org" .
 
 <https://bio.tools/omicsdi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web API" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -339915,8 +355595,30 @@ Accelerating in-silico gene discovery in plants, animals and microbes.""" ;
     sc:softwareHelp <http://blog.omicsdi.org/> ;
     sc:url "http://www.omicsdi.org" .
 
+<https://bio.tools/omicslonda> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0121,
+        edam:topic_0153,
+        edam:topic_3172,
+        edam:topic_3360,
+        edam:topic_3697 ;
+    sc:citation <https://doi.org/10.1101/2021.11.19.469350> ;
+    sc:description "Statistical method that provides robust identification of time intervals where omics features (such as proteomics, lipidomics, metabolomics, transcriptomics, microbiome, as well as physiological parameters captured by wearable sensors such as heart rhythm, body temperature, and activity level) are significantly different between groups." ;
+    sc:featureList edam:operation_3432,
+        edam:operation_3435,
+        edam:operation_3659 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "OmicsLonDA" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://bioconductor.org/packages/release/bioc/manuals/OmicsLonDA/man/OmicsLonDA.pdf> ;
+    sc:url "https://bioconductor.org/packages/OmicsLonDA" .
+
 <https://bio.tools/omicsmarker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -339939,7 +355641,7 @@ Accelerating in-silico gene discovery in plants, animals and microbes.""" ;
     biotools:primaryContact "Charles E. Determan Jr." .
 
 <https://bio.tools/omicsnet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602 ;
     sc:citation <https://doi.org/10.1093/nar/gky510>,
@@ -339957,7 +355659,7 @@ Accelerating in-silico gene discovery in plants, animals and microbes.""" ;
     sc:url "http://www.omicsnet.ca/OmicsNet/" .
 
 <https://bio.tools/omicson> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0153,
@@ -339975,7 +355677,7 @@ Accelerating in-silico gene discovery in plants, animals and microbes.""" ;
     sc:url "https://github.com/cmujzbit/OmicsON" .
 
 <https://bio.tools/omicsprint> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3308,
@@ -339995,7 +355697,7 @@ Accelerating in-silico gene discovery in plants, animals and microbes.""" ;
     biotools:primaryContact "Davy Cats" .
 
 <https://bio.tools/omicstide> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -340021,7 +355723,7 @@ Analysis pipelines for high throughput transcriptome data often produce long lis
     sc:url "http://tuevis.informatik.uni-tuebingen.de/" .
 
 <https://bio.tools/omicsview> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0634,
@@ -340041,7 +355743,7 @@ Analysis pipelines for high throughput transcriptome data often produce long lis
     sc:url "http://omicsview.org" .
 
 <https://bio.tools/omicsviz> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0154,
@@ -340061,7 +355763,7 @@ Analysis pipelines for high throughput transcriptome data often produce long lis
     biotools:primaryContact "XiaoLin Yang" .
 
 <https://bio.tools/omicsvolcano> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -340081,7 +355783,7 @@ Description: OmicsVolcano is the R software for intuitive visualization and inte
     sc:url "https://github.com/IrinaVKuznetsova/OmicsVolcano" .
 
 <https://bio.tools/omim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web API",
         "Web application" ;
@@ -340091,8 +355793,17 @@ Description: OmicsVolcano is the R software for intuitive visualization and inte
         edam:topic_3325,
         edam:topic_3574 ;
     sc:citation <https://doi.org/10.1093/nar/gki033>,
+        <https://doi.org/10.1093/nar/gkn665>,
+        <https://doi.org/10.1093/nar/gku1205>,
+        <https://doi.org/10.1093/nar/gky1151>,
+        "pmcid:PMC2686440",
+        "pmcid:PMC4383985",
         "pmcid:PMC539987",
-        "pubmed:15608251" ;
+        "pmcid:PMC6323937",
+        "pubmed:15608251",
+        "pubmed:18842627",
+        "pubmed:25428349",
+        "pubmed:30445645" ;
     sc:description "Online Mendelian inheritance in Man (OMIM) - catalog of human genes and genetic disorders with descriptive text, references, and links to many NCBI resources including GenBank and PubMed." ;
     sc:featureList edam:operation_0224,
         edam:operation_0282,
@@ -340110,7 +355821,7 @@ Description: OmicsVolcano is the R software for intuitive visualization and inte
     biotools:primaryContact "Ada Hamosh" .
 
 <https://bio.tools/omim_explorer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0634,
@@ -340135,7 +355846,7 @@ Description: OmicsVolcano is the R software for intuitive visualization and inte
     biotools:primaryContact "Chad A. Shaw" .
 
 <https://bio.tools/omiras> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0659,
@@ -340152,7 +355863,7 @@ Description: OmicsVolcano is the R software for intuitive visualization and inte
     biotools:primaryContact "Björn Rotter" .
 
 <https://bio.tools/omixer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3277,
         edam:topic_3382,
@@ -340168,7 +355879,7 @@ Description: OmicsVolcano is the R software for intuitive visualization and inte
     biotools:primaryContact <https://orcid.org/0000-0002-9209-1266> .
 
 <https://bio.tools/omixlitminer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -340189,7 +355900,7 @@ OmixLitMiner is a new tool that aims to help researchers reduce time spent on li
     sc:url "https://github.com/Sydney-Informatics-Hub/OmixLitMiner" .
 
 <https://bio.tools/omixon_variant_toolkit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0102,
@@ -340204,8 +355915,33 @@ OmixLitMiner is a new tool that aims to help researchers reduce time spent on li
     sc:url "http://www.omixon.com" ;
     biotools:primaryContact "Contact form" .
 
+<https://bio.tools/omnalysis> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0080,
+        edam:topic_0121,
+        edam:topic_3170,
+        edam:topic_3308,
+        edam:topic_3360 ;
+    sc:citation <https://doi.org/10.7717/PEERJ.12415>,
+        "pmcid:PMC8588854",
+        "pubmed:34820180" ;
+    sc:description "An integrated web application to explore quantitative differential omics data" ;
+    sc:featureList edam:operation_2436,
+        edam:operation_2939,
+        edam:operation_3799,
+        edam:operation_3891,
+        edam:operation_3926 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "OMnalysis" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://lbmi.uvlf.sk/omnalysis.html" .
+
 <https://bio.tools/omnibiomarker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2640,
@@ -340222,8 +355958,30 @@ OmixLitMiner is a new tool that aims to help researchers reduce time spent on li
     biotools:primaryContact "John H. Phan",
         "May D. Wang" .
 
+<https://bio.tools/omniplate> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0621,
+        edam:topic_2229,
+        edam:topic_3297,
+        edam:topic_3407 ;
+    sc:citation <https://doi.org/10.1371/JOURNAL.PCBI.1010138>,
+        "pmcid:PMC9176753",
+        "pubmed:35617352" ;
+    sc:description "Analysing and meta-analysing time-series data of microbial growth and gene expression from plate readers." ;
+    sc:featureList edam:operation_3435,
+        edam:operation_3565 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "omniplate" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://swainlab.bio.ed.ac.uk/software/omniplate" .
+
 <https://bio.tools/omokage_search> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2275,
         edam:topic_2814 ;
@@ -340239,7 +355997,7 @@ OmixLitMiner is a new tool that aims to help researchers reduce time spent on li
     biotools:primaryContact "Hirofumi Suzuki" .
 
 <https://bio.tools/ompdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0081 ;
@@ -340258,18 +356016,15 @@ OmixLitMiner is a new tool that aims to help researchers reduce time spent on li
 
 <https://bio.tools/omssa_parser> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ] ;
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:name "Mass spectrometry data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ],
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:name "Image" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:name "Mass spectrometry data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121 ;
@@ -340287,10 +356042,10 @@ OmixLitMiner is a new tool that aims to help researchers reduce time spent on li
 
 <https://bio.tools/omssagui> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3651" ;
+            sc:name "Mass spectrometry spectra" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121 ;
     sc:citation <https://doi.org/10.1002/pmic.200701126> ;
@@ -340305,7 +356060,7 @@ OmixLitMiner is a new tool that aims to help researchers reduce time spent on li
     biotools:primaryContact "David Graham" .
 
 <https://bio.tools/omtools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654,
@@ -340325,7 +356080,7 @@ OmixLitMiner is a new tool that aims to help researchers reduce time spent on li
         "Ting-Fung Chan" .
 
 <https://bio.tools/omware> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0622,
@@ -340341,7 +356096,7 @@ OmixLitMiner is a new tool that aims to help researchers reduce time spent on li
     biotools:primaryContact "Aaron R. Sharp" .
 
 <https://bio.tools/omwsa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btm008> ;
@@ -340354,7 +356109,7 @@ OmixLitMiner is a new tool that aims to help researchers reduce time spent on li
     sc:url "http://www.hy8.com/bioinformatics.htm" .
 
 <https://bio.tools/onassis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0089 ;
     sc:description "A package that allows the annotation of text with ontology terms (mainly from OBO ontologies) and the computation of semantic similarity measures based on the structure of the ontology between different annotated samples." ;
@@ -340371,8 +356126,59 @@ OmixLitMiner is a new tool that aims to help researchers reduce time spent on li
     sc:url "http://bioconductor.org/packages/release/bioc/html/Onassis.html" ;
     biotools:primaryContact "Eugenia Galeota" .
 
+<https://bio.tools/oncmtr> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2610" ;
+            sc:name "Ensembl ID" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2299" ;
+            sc:name "Gene name" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0199,
+        edam:topic_0622,
+        edam:topic_2640,
+        edam:topic_3337,
+        edam:topic_3676 ;
+    sc:citation <https://doi.org/10.1126/sciadv.abo6371>,
+        "pmcid:PMC9417173",
+        "pubmed:36026442" ;
+    sc:description "OncMTR stands for missense tolerance ratio specific for cancer-driving mutations. It is designed to predict cancer-causing somatic mutations. The lower the OncMTR score, the less tolerant the region for cancer-causing somatic mutations. Positions with scores below -0.05 are considered missense intolerant regions." ;
+    sc:featureList edam:operation_3196,
+        edam:operation_3226,
+        edam:operation_3227 ;
+    sc:isAccessibleForFree true ;
+    sc:name "OncMTR" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://astrazeneca-cgr-publications.github.io/OncMTR-Viewer/" .
+
+<https://bio.tools/oncoboxpd> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0203,
+        edam:topic_0602,
+        edam:topic_3172,
+        edam:topic_3407 ;
+    sc:citation <https://doi.org/10.1016/J.CSBJ.2022.05.006>,
+        "pmcid:PMC9120235",
+        "pubmed:35615022" ;
+    sc:description "Human 51 672 molecular pathways database with tools for activity calculating and visualization." ;
+    sc:featureList edam:operation_0533,
+        edam:operation_3926,
+        edam:operation_3929 ;
+    sc:isAccessibleForFree true ;
+    sc:name "OncoboxPD" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://open.oncobox.com" .
+
 <https://bio.tools/oncocnv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3168,
@@ -340388,8 +356194,32 @@ OmixLitMiner is a new tool that aims to help researchers reduce time spent on li
     sc:url "https://oncocnv.curie.fr/" ;
     biotools:primaryContact "Valentina Boeva" .
 
+<https://bio.tools/oncodb> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0654,
+        edam:topic_2640,
+        edam:topic_3170,
+        edam:topic_3295 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAB970>,
+        "pmcid:PMC8728272",
+        "pubmed:34718715" ;
+    sc:description "An interactive online database for analysis of gene expression and viral infection in cancer." ;
+    sc:featureList edam:operation_3207,
+        edam:operation_3223,
+        edam:operation_3463 ;
+    sc:isAccessibleForFree true ;
+    sc:name "OncoDB" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <http://oncodb.org/tutorial.html> ;
+    sc:url "http://oncodb.org" .
+
 <https://bio.tools/oncodriveclust> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Script" ;
     sc:applicationSubCategory edam:topic_0199,
@@ -340407,7 +356237,7 @@ OmixLitMiner is a new tool that aims to help researchers reduce time spent on li
     biotools:primaryContact "David Tamborero" .
 
 <https://bio.tools/oncodrivefm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_2533,
@@ -340423,8 +356253,72 @@ OmixLitMiner is a new tool that aims to help researchers reduce time spent on li
     sc:softwareHelp <http://bg.upf.edu/group/projects/oncodrive-fm.php> ;
     sc:url "http://bg.upf.edu/group/projects/oncodrive-fm.php" .
 
+<https://bio.tools/oncoenrichr> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2725" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Ensembl transcript ID" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1098" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "RefSeq accession" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2610" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Ensembl ID" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1027" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Gene ID (NCBI)" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_3021" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "UniProt accession" ] ;
+    bsc:output [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_3620" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0085,
+        edam:topic_0091,
+        edam:topic_0092,
+        edam:topic_0208,
+        edam:topic_2533,
+        edam:topic_2640,
+        edam:topic_3345,
+        edam:topic_3366,
+        edam:topic_3958 ;
+    sc:author <https://orcid.org/0000-0001-8468-2050> ;
+    sc:citation <https://doi.org/10.48550/arXiv.2107.13247> ;
+    sc:description """oncoEnrichR is an R package for functional interrogation of human genesets in the context of cancer. The package leverages an extensive amount of prior molecular knowledge for geneset interpretation along multiple dimensions.
+
+oncoEnrichR is primarily intended for exploratory analysis and prioritization of a gene list from high-throughput cancer biology experiments, e.g. genetic screens (siRNA/CRISPR), protein proximity labeling, or transcriptomics (differential expression). The tool queries a number of high-quality data resources in order to assemble useful gene annotations and analyses in an interactive report.""" ;
+    sc:featureList edam:operation_0276,
+        edam:operation_0531,
+        edam:operation_2436,
+        edam:operation_2437,
+        edam:operation_3282,
+        edam:operation_3463,
+        edam:operation_3672,
+        edam:operation_3925 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "oncoEnrichR" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://sigven.github.io/oncoEnrichR>,
+        <https://sigven.github.io/oncoEnrichR/articles/CHANGELOG.html>,
+        <https://sigven.github.io/oncoEnrichR/authors.html#citation>,
+        <https://sigven.github.io/oncoEnrichR/reference/index.html> ;
+    sc:softwareVersion "1.0.9" ;
+    sc:url "https://github.com/sigven/oncoEnrichR" ;
+    biotools:primaryContact <https://orcid.org/0000-0001-8468-2050> .
+
 <https://bio.tools/oncofuse> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2640 ;
     sc:description "Oncofuse is a framework designed to estimate the oncogenic potential of de-novo discovered gene fusions. It uses several hallmark features and employs a bayesian classifier to provide the probability of a given gene fusion being a driver mutation." ;
     sc:featureList edam:operation_0253,
@@ -340433,7 +356327,7 @@ OmixLitMiner is a new tool that aims to help researchers reduce time spent on li
     sc:url "https://github.com/mikessh/oncofuse" .
 
 <https://bio.tools/oncogemini> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_2640,
@@ -340452,7 +356346,7 @@ OncoGEMINI is an adaptation of GEMINI intended for the improved identification o
     sc:url "https://github.com/fakedrtom/oncogemini" .
 
 <https://bio.tools/oncogenomiclandscapes> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:citation <https://doi.org/10.1186/s13073-018-0571-0>,
         "pubmed:30071882" ;
     sc:description "The widespread incorporation of next-generation sequencing into clinical oncology has yielded an unprecedented amount of molecular data from thousands of patients. A main current challenge is to find out reliable ways to extrapolate results from one group of patients to another and to bring rationale to individual cases in the light of what is known from the cohorts. We present OncoGenomic Landscapes, a framework to analyze and display thousands of cancer genomic profiles in a 2D space. Our tool allows users to rapidly assess the heterogeneity of large cohorts, enabling the comparison to other groups of patients, and using driver genes as landmarks to aid in the interpretation of the landscapes. In our web-server, we also offer the possibility of mapping new samples and cohorts onto 22 predefined landscapes related to cancer cell line panels, organoids, patient-derived xenografts, and clinical tumor samples." ;
@@ -340460,7 +356354,7 @@ OncoGEMINI is an adaptation of GEMINI intended for the improved identification o
     sc:url "https://oglandscapes.irbbarcelona.org/" .
 
 <https://bio.tools/oncomix> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3168 ;
@@ -340478,8 +356372,37 @@ OncoGEMINI is an adaptation of GEMINI intended for the improved identification o
     sc:url "http://bioconductor.org/packages/release/bioc/html/oncomix.html" ;
     biotools:primaryContact "Daniel Pique" .
 
+<https://bio.tools/oncopharmadb> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0208,
+        edam:topic_0622,
+        edam:topic_2640,
+        edam:topic_3345,
+        edam:topic_3366,
+        edam:topic_3473 ;
+    sc:author <https://orcid.org/0000-0001-8468-2050> ;
+    sc:description """oncoPharmaDB - Targeted and non-targeted anticancer drugs and drug regimens.
+
+This R package provides a dataset and method to query targeted and non-targeted cancer drugs, including comprehensive annotations per target, drug mechanism-of-action, approval dates, clinical trial phases for various indications etc.""" ;
+    sc:featureList edam:operation_2422 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "oncoPharmaDB" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://sigven.github.io/oncoPharmaDB/>,
+        <https://sigven.github.io/oncoPharmaDB/articles/installation.html>,
+        <https://sigven.github.io/oncoPharmaDB/articles/running.html>,
+        <https://sigven.github.io/oncoPharmaDB/reference/index.html> ;
+    sc:softwareVersion "0.7.2" ;
+    sc:url "https://github.com/sigven/oncoPharmaDB" ;
+    biotools:primaryContact <https://orcid.org/0000-0001-8468-2050> .
+
 <https://bio.tools/oncoscore> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2640,
@@ -340501,7 +356424,7 @@ OncoGEMINI is an adaptation of GEMINI intended for the improved identification o
     biotools:primaryContact "Daniele Ramazzotti" .
 
 <https://bio.tools/oncosearch> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0204,
@@ -340526,18 +356449,18 @@ OncoGEMINI is an adaptation of GEMINI intended for the improved identification o
 
 <https://bio.tools/oncosimulr> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3722" ;
-            sc:name "Physiology parameter" ;
-            sc:sameAs "http://edamontology.org/data_3722" ] ;
+            sc:additionalType "http://edamontology.org/data_3722" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Physiology parameter" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1772" ;
-            sc:name "Score" ;
-            sc:sameAs "http://edamontology.org/data_1772" ],
+            sc:additionalType "http://edamontology.org/data_1772" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Score" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2640,
@@ -340559,7 +356482,7 @@ OncoGEMINI is an adaptation of GEMINI intended for the improved identification o
     biotools:primaryContact <http://orcid.org/0000-0002-6637-9039> .
 
 <https://bio.tools/oncosplicing> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_2640,
@@ -340581,7 +356504,7 @@ OncoGEMINI is an adaptation of GEMINI intended for the improved identification o
     sc:url "http://www.oncosplicing.com" .
 
 <https://bio.tools/oncotator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_2533,
@@ -340599,7 +356522,7 @@ OncoGEMINI is an adaptation of GEMINI intended for the improved identification o
     sc:url "http://www.broadinstitute.org/oncotator/" .
 
 <https://bio.tools/oncothreads> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
@@ -340622,7 +356545,7 @@ OncoGEMINI is an adaptation of GEMINI intended for the improved identification o
     sc:url "http://oncothreads.gehlenborglab.org" .
 
 <https://bio.tools/oncotrf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0659,
@@ -340645,7 +356568,7 @@ OncotRF provides an integrated view of dysregulated tRFs among cancers. It serve
     sc:url "http://bioinformatics.zju.edu.cn/OncotRF" .
 
 <https://bio.tools/oncovar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0602,
@@ -340667,7 +356590,7 @@ OncoVar is a platform to systematically prioritize the oncogenic ability of soma
     sc:url "https://oncovar.org/" .
 
 <https://bio.tools/oncoyeasti> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_2640 ;
@@ -340681,14 +356604,12 @@ OncoVar is a platform to systematically prioritize the oncogenic ability of soma
 
 <https://bio.tools/ond-crf> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:name "Protein sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:name "Protein features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btn261> ;
@@ -340704,7 +356625,7 @@ OncoVar is a platform to systematically prioritize the oncogenic ability of soma
     sc:url "http://babel.ucmp.umu.se/ond-crf/" .
 
 <https://bio.tools/ondb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_3068,
@@ -340722,7 +356643,7 @@ OncoVar is a platform to systematically prioritize the oncogenic ability of soma
     sc:url "http://z.umn.edu/ondb" .
 
 <https://bio.tools/one-block_cyrca> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0160,
@@ -340742,7 +356663,7 @@ OncoVar is a platform to systematically prioritize the oncogenic ability of soma
     sc:url "http://bioinformatics.weizmann.ac.il/~milana/OneCYRCA/" .
 
 <https://bio.tools/one-hot-encoding-table> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -340758,7 +356679,7 @@ OncoVar is a platform to systematically prioritize the oncogenic ability of soma
     biotools:primaryContact "Christopher Stokely" .
 
 <https://bio.tools/one_to_three> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121 ;
     sc:citation <https://doi.org/10.2144/00286ir01>,
@@ -340774,7 +356695,7 @@ OncoVar is a platform to systematically prioritize the oncogenic ability of soma
     biotools:primaryContact "One to Three Support" .
 
 <https://bio.tools/onechannelgu> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0659,
@@ -340794,7 +356715,7 @@ OncoVar is a platform to systematically prioritize the oncogenic ability of soma
     biotools:primaryContact "Raffaele A Calogero" .
 
 <https://bio.tools/onepetri> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3382,
         edam:topic_3474 ;
     sc:citation <https://doi.org/10.1089/phage.2021.0012> ;
@@ -340808,7 +356729,7 @@ OncoVar is a platform to systematically prioritize the oncogenic ability of soma
     sc:url "https://onepetri.ai" .
 
 <https://bio.tools/onesense> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070 ;
     sc:citation <https://doi.org/10.4049/jimmunol.1501928> ;
@@ -340827,7 +356748,7 @@ OncoVar is a platform to systematically prioritize the oncogenic ability of soma
     biotools:primaryContact "Yong Kee Tan" .
 
 <https://bio.tools/onestoprnaseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -340848,7 +356769,7 @@ OncoVar is a platform to systematically prioritize the oncogenic ability of soma
     sc:url "https://mccb.umassmed.edu/OneStopRNAseq" .
 
 <https://bio.tools/onetool> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_3053,
@@ -340865,7 +356786,7 @@ OncoVar is a platform to systematically prioritize the oncogenic ability of soma
         "Sungho Won" .
 
 <https://bio.tools/onionmhc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0218,
@@ -340884,7 +356805,7 @@ Peptide - HLA-A*02:01 binding prediction using structure and sequence feature se
     sc:url "https://github.com/shikhar249/OnionMHC" .
 
 <https://bio.tools/online-chem> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0176,
         edam:topic_0209,
@@ -340905,7 +356826,7 @@ OpenBabel for converting to PDBQT file format http://openbabel.org/wiki/Main_Pag
     sc:url "https://github.com/bigchem/online-chem" .
 
 <https://bio.tools/onlineFDR> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0625 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btz191>,
@@ -340925,7 +356846,7 @@ OpenBabel for converting to PDBQT file format http://openbabel.org/wiki/Main_Pag
     biotools:primaryContact "David Robertson" .
 
 <https://bio.tools/online_sbml_validator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API" ;
     sc:applicationSubCategory edam:topic_2259,
         edam:topic_3071 ;
@@ -340940,7 +356861,7 @@ OpenBabel for converting to PDBQT file format http://openbabel.org/wiki/Main_Pag
     sc:url "http://sbml.org/Facilities/Documentation/Validator_Web_API" .
 
 <https://bio.tools/onn4arg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0203,
@@ -340961,7 +356882,7 @@ OpenBabel for converting to PDBQT file format http://openbabel.org/wiki/Main_Pag
     sc:url "https://github.com/xfcui/onn4arg" .
 
 <https://bio.tools/onn4mst> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_3174,
@@ -340979,7 +356900,7 @@ This program is designed to perform fast and accurate biome source tracking amon
     sc:url "https://github.com/HUST-NingKang-Lab/ONN4MST" .
 
 <https://bio.tools/onpoint> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3361,
         edam:topic_3678 ;
@@ -340990,8 +356911,35 @@ This program is designed to perform fast and accurate biome source tracking amon
     sc:url "https://github.com/alan-s-lee/OnPoint" ;
     biotools:primaryContact "Jonathan Tsay" .
 
+<https://bio.tools/onquadro> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_0968" ;
+            sc:name "Keyword" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0077,
+        edam:topic_0082,
+        edam:topic_2814,
+        edam:topic_3047,
+        edam:topic_3067 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAB1118>,
+        "pmcid:PMC8728301",
+        "pubmed:34986600" ;
+    sc:description "A database that collects tetrads, quadruplexes, and G4-helices found in PDB-deposited structures of nucleic acids. It stores their sequences, secondary and tertiary structures, and motif-specific description including planarity, rise and twist parameters, ONZ classification, Webba da Silva geometric formalism, dot-bracket encoding, arc diagrams, etc. Graphical 2D and 3D views complement their characteristics." ;
+    sc:featureList edam:operation_1831,
+        edam:operation_2486,
+        edam:operation_2488,
+        edam:operation_2518,
+        edam:operation_3431 ;
+    sc:isAccessibleForFree true ;
+    sc:name "ONQUADRO" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://onquadro.cs.put.poznan.pl/" .
+
 <https://bio.tools/onthefly> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:description "OnTheFly2.0 is a web application to aid users collecting biological information from documents. With OnTheFly2.0 one is able to extract bioentities from individual articles in formats such as plain text, Microsoft Word, Excel and PDF files ad scan images and identify terms by using Optical Character Recognition (OCR)." ;
     sc:name "OnTheFly" ;
@@ -340999,7 +356947,7 @@ This program is designed to perform fast and accurate biome source tracking amon
     sc:url "http://bib.fleming.gr:3838/OnTheFly" .
 
 <https://bio.tools/onto-tools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -341030,18 +356978,17 @@ This program is designed to perform fast and accurate biome source tracking amon
 
 <https://bio.tools/ontobrowser> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0966" ;
-            sc:name "Ontology term" ;
-            sc:sameAs "http://edamontology.org/data_0966" ],
+            sc:additionalType "http://edamontology.org/data_3028" ;
+            sc:encodingFormat "http://edamontology.org/format_2549" ;
+            sc:name "Taxonomy" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3028" ;
-            sc:name "Taxonomy" ;
-            sc:sameAs "http://edamontology.org/data_3028" ] ;
+            sc:additionalType "http://edamontology.org/data_0966" ;
+            sc:name "Ontology term" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2254" ;
-            sc:name "OBO file format name" ;
-            sc:sameAs "http://edamontology.org/data_2254" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2254" ;
+            sc:encodingFormat "http://edamontology.org/format_3255" ;
+            sc:name "OBO file format name" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0089,
@@ -341071,7 +357018,7 @@ This program is designed to perform fast and accurate biome source tracking amon
     biotools:primaryContact <https://orcid.org/0000-0002-0064-0572> .
 
 <https://bio.tools/ontocat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0089,
@@ -341090,7 +357037,7 @@ This program is designed to perform fast and accurate biome source tracking amon
     biotools:primaryContact "Natalja Kurbatova" .
 
 <https://bio.tools/ontoclick> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0769,
@@ -341109,10 +357056,9 @@ This program is designed to perform fast and accurate biome source tracking amon
 
 <https://bio.tools/ontocount> a sc:SoftwareApplication ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2223" ;
-            sc:name "Ontology metadata" ;
-            sc:sameAs "http://edamontology.org/data_2223" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2223" ;
+            sc:name "Ontology metadata" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0089 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -341142,7 +357088,7 @@ This program is designed to perform fast and accurate biome source tracking amon
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/ontocount.html" .
 
 <https://bio.tools/ontofast> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0625,
@@ -341163,10 +357109,9 @@ This program is designed to perform fast and accurate biome source tracking amon
 
 <https://bio.tools/ontoget> a sc:SoftwareApplication ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0966" ;
-            sc:name "Ontology term" ;
-            sc:sameAs "http://edamontology.org/data_0966" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0966" ;
+            sc:name "Ontology term" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0089 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -341197,10 +357142,9 @@ This program is designed to perform fast and accurate biome source tracking amon
 
 <https://bio.tools/ontogetcommon> a sc:SoftwareApplication ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0966" ;
-            sc:name "Ontology term" ;
-            sc:sameAs "http://edamontology.org/data_0966" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0966" ;
+            sc:name "Ontology term" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0089 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -341231,10 +357175,9 @@ This program is designed to perform fast and accurate biome source tracking amon
 
 <https://bio.tools/ontogetdown> a sc:SoftwareApplication ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0966" ;
-            sc:name "Ontology term" ;
-            sc:sameAs "http://edamontology.org/data_0966" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0966" ;
+            sc:name "Ontology term" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0089 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -341265,10 +357208,9 @@ This program is designed to perform fast and accurate biome source tracking amon
 
 <https://bio.tools/ontogetobsolete> a sc:SoftwareApplication ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0966" ;
-            sc:name "Ontology term" ;
-            sc:sameAs "http://edamontology.org/data_0966" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0966" ;
+            sc:name "Ontology term" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0089 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -341299,10 +357241,9 @@ This program is designed to perform fast and accurate biome source tracking amon
 
 <https://bio.tools/ontogetroot> a sc:SoftwareApplication ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0966" ;
-            sc:name "Ontology term" ;
-            sc:sameAs "http://edamontology.org/data_0966" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0966" ;
+            sc:name "Ontology term" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0089 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -341333,10 +357274,9 @@ This program is designed to perform fast and accurate biome source tracking amon
 
 <https://bio.tools/ontogetsibs> a sc:SoftwareApplication ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0966" ;
-            sc:name "Ontology term" ;
-            sc:sameAs "http://edamontology.org/data_0966" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0966" ;
+            sc:name "Ontology term" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0089 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -341367,10 +357307,9 @@ This program is designed to perform fast and accurate biome source tracking amon
 
 <https://bio.tools/ontogetup> a sc:SoftwareApplication ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0966" ;
-            sc:name "Ontology term" ;
-            sc:sameAs "http://edamontology.org/data_0966" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0966" ;
+            sc:name "Ontology term" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0089 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -341401,10 +357340,9 @@ This program is designed to perform fast and accurate biome source tracking amon
 
 <https://bio.tools/ontoisobsolete> a sc:SoftwareApplication ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2223" ;
-            sc:name "Ontology metadata" ;
-            sc:sameAs "http://edamontology.org/data_2223" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2223" ;
+            sc:name "Ontology metadata" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0089 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -341434,7 +357372,7 @@ This program is designed to perform fast and accurate biome source tracking amon
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/ontoisobsolete.html" .
 
 <https://bio.tools/ontologizer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application",
         "Web application" ;
@@ -341450,7 +357388,7 @@ This program is designed to perform fast and accurate biome source tracking amon
     sc:url "http://ontologizer.de/" .
 
 <https://bio.tools/ontology-extension> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0769,
@@ -341471,7 +357409,7 @@ This repository contains script which were used to build and train the predictio
     sc:url "https://github.com/bio-ontology-research-group/ontology-extension" .
 
 <https://bio.tools/ontoproc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0089 ;
     sc:description "Support harvesting of diverse bioinformatic ontologies, making particular use of the ontologyIndex package on CRAN. We provide snapshots of key ontologies for terms about cells, cell lines, chemical compounds, and anatomy, to help analyze genome-scale experiments, particularly cell x compound screens. Another purpose is to strengthen development of compelling use cases for richer interfaces to emerging ontologies." ;
@@ -341489,7 +357427,7 @@ This repository contains script which were used to build and train the predictio
     biotools:primaryContact "VJ Carey" .
 
 <https://bio.tools/ontoquest_ws> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_3071 ;
@@ -341504,7 +357442,7 @@ This repository contains script which were used to build and train the predictio
     sc:url "https://confluence.crbs.ucsd.edu/display/NIF/OntoQuestMain" .
 
 <https://bio.tools/ontoquestmain> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_3071,
@@ -341521,10 +357459,9 @@ This repository contains script which were used to build and train the predictio
 
 <https://bio.tools/ontotext> a sc:SoftwareApplication ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0966" ;
-            sc:name "Ontology term" ;
-            sc:sameAs "http://edamontology.org/data_0966" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0966" ;
+            sc:name "Ontology term" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0089 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -341553,8 +357490,50 @@ This repository contains script which were used to build and train the predictio
     sc:softwareVersion "r6" ;
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/ontotext.html" .
 
+<https://bio.tools/oo-site> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0108,
+        edam:topic_0203,
+        edam:topic_2229,
+        edam:topic_3170,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.1242/BIO.059286>,
+        "pmcid:PMC9148541",
+        "pubmed:35579517" ;
+    sc:description "A dashboard to visualize gene expression during Drosophila oogenesis suggests meiotic entry is regulated post-transcriptionally." ;
+    sc:featureList edam:operation_0313,
+        edam:operation_0571,
+        edam:operation_3223 ;
+    sc:isAccessibleForFree true ;
+    sc:name "Oo-site" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://www.ranganlab.com/Oo-site" .
+
+<https://bio.tools/ood> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_2815,
+        edam:topic_3318,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1002/AIL2.63>,
+        "pmcid:PMC9159682",
+        "pubmed:35669063" ;
+    sc:description "Generative model-enhanced human motion prediction." ;
+    sc:featureList edam:operation_0244,
+        edam:operation_3927 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "OoD" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/bouracha/OoDMotion" .
+
 <https://bio.tools/oommppaa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0081,
@@ -341572,7 +357551,7 @@ This repository contains script which were used to build and train the predictio
     biotools:primaryContact "Anthony Bradley" .
 
 <https://bio.tools/oompa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3518 ;
@@ -341588,7 +357567,7 @@ This repository contains script which were used to build and train the predictio
     biotools:primaryContact "Kevin R. Coombes" .
 
 <https://bio.tools/opa2vec> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0625,
@@ -341611,7 +357590,7 @@ OPA2Vec is a tool that can be used to produce feature vectors for biological ent
     sc:url "https://github.com/bio-ontology-research-group/opa2vec" .
 
 <https://bio.tools/opaas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -341628,7 +357607,7 @@ OPA2Vec is a tool that can be used to produce feature vectors for biological ent
     sc:url "http://opaas.ibms.sinica.edu.tw/" .
 
 <https://bio.tools/opal> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -341637,6 +357616,7 @@ OPA2Vec is a tool that can be used to produce feature vectors for biological ent
     sc:citation <https://doi.org/10.1093/bioinformatics/bty032> ;
     sc:description "Prediction of MoRF regions in intrinsically disordered protein sequences." ;
     sc:featureList edam:operation_0245 ;
+    sc:isAccessibleForFree true ;
     sc:name "OPAL" ;
     sc:operatingSystem "Linux",
         "Mac",
@@ -341647,7 +357627,7 @@ OPA2Vec is a tool that can be used to produce feature vectors for biological ent
         "Ashwini Patil" .
 
 <https://bio.tools/opal_ws> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3063,
         edam:topic_3068,
@@ -341669,7 +357649,7 @@ OPA2Vec is a tool that can be used to produce feature vectors for biological ent
         "Wilfred Li" .
 
 <https://bio.tools/open-brain-consent> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3263,
         edam:topic_3337,
         edam:topic_3384 ;
@@ -341690,29 +357670,13 @@ Flexibility in the interpretation of original regulations established in the pas
     sc:url "https://open-brain-consent.readthedocs.io" .
 
 <https://bio.tools/open-cravat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "OpenCRAVAT is a new open source, scalable decision support system to support variant and gene prioritization. It offers a dynamic GUI, allowing users to easily, download tools from an extensive resource catalog, create customized pipelines, run jobs at speeds that exceed current variant annotation API services, and explore results in a richly detailed viewing environment. OpenCRAVAT is distinguished from similar tools by the amount and diversity of data resources and computational prediction methods available, which span germline, somatic, common, rare, coding and non-coding variants. We have designed the OpenCRAVAT resource catalog to be open and modular to maximize community and developer involvement, and as a result the catalog is being actively developed and growing larger every month." ;
     sc:name "open-cravat" ;
     sc:url "https://opencravat.org/" .
 
-<https://bio.tools/open-data> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0102,
-        edam:topic_3473,
-        edam:topic_3474 ;
-    sc:citation <https://doi.org/10.20944/PREPRINTS201911.0149.V1> ;
-    sc:description """On Car Sharing Usage Prediction with Open Socio-Demographic Data.
-
-Home — City of Vancouver Open Data Portal.
-
-View datasets from the City of Vancouver, BC, Canada. Download data in various formats, explore with charts and maps, and access via API.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'Car', 'FFCS', 'socio-demographic', 'FFCS rides'""" ;
-    sc:featureList edam:operation_3282 ;
-    sc:name "open-data" ;
-    sc:url "https://opendata.vancouver.ca/pages/home/" .
-
 <https://bio.tools/open-specy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0769 ;
@@ -341728,7 +357692,7 @@ View datasets from the City of Vancouver, BC, Canada. Download data in various f
     biotools:primaryContact <https://orcid.org/0000-0001-9226-3104> .
 
 <https://bio.tools/openTSNE> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3308,
@@ -341741,7 +357705,7 @@ View datasets from the City of Vancouver, BC, Canada. Download data in various f
     sc:url "https://github.com/pavlin-policar/openTSNE" .
 
 <https://bio.tools/open_babel> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application",
         "Web application" ;
@@ -341761,21 +357725,25 @@ View datasets from the City of Vancouver, BC, Canada. Download data in various f
     sc:softwareHelp <http://openbabel.org/wiki/Help> ;
     sc:url "http://openbabel.org/wiki/Main_Page" .
 
-<https://bio.tools/open_laboratory_notebooks> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3334,
-        edam:topic_3393,
-        edam:topic_3855 ;
-    sc:citation <https://doi.org/10.12688/F1000RESEARCH.17710.2>,
-        "pmcid:PMC6694453",
-        "pubmed:31448096" ;
-    sc:description "good for science, good for society, good for scientists | openlabnotebooks.org – A growing team of groundbreaking scientists around the world are now sharing their lab notebooks online | An Extreme Open Science Initiative | In a groundbreaking initiative, scientists around the world from Universities in Canada, France, Sweden, the UK, and the USA are now sharing their lab notebooks | Open Lab Notebooks: An Extreme Open Science Initiative 19th January 2018 | A growing team of groundbreaking scientists around the world are now sharing their lab notebooks online | In a groundbreaking initiative, scientists around the world from Universities in Canada, France, Sweden, the UK, and the USA are starting to share their laboratory notebooks live, online | CIHR Boardroom 9-101, 160 Elgin st, Ottawa, Canada" ;
-    sc:featureList edam:operation_3216,
-        edam:operation_3431 ;
-    sc:name "open laboratory notebooks" ;
-    sc:url "http://openlabnotebooks.org" .
+<https://bio.tools/open_lab> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3263,
+        edam:topic_3361,
+        edam:topic_3678 ;
+    sc:citation <https://doi.org/10.3758/S13428-021-01776-2>,
+        "pubmed:35233751" ;
+    sc:description "A web application for running and sharing online experiments." ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "Open Lab" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://open-lab.online" .
 
 <https://bio.tools/open_phacts> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0202,
@@ -341798,7 +357766,7 @@ View datasets from the City of Vancouver, BC, Canada. Download data in various f
     biotools:primaryContact "Open PHACTS foundation" .
 
 <https://bio.tools/open_phacts_api> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API" ;
     sc:applicationSubCategory edam:topic_3332,
         edam:topic_3336,
@@ -341828,7 +357796,7 @@ View datasets from the City of Vancouver, BC, Canada. Download data in various f
         "Open PHACTS support portal" .
 
 <https://bio.tools/open_phacts_chemistry_registry_system> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0202,
         edam:topic_2258,
@@ -341850,7 +357818,7 @@ View datasets from the City of Vancouver, BC, Canada. Download data in various f
     sc:url "http://ops.rsc.org/" .
 
 <https://bio.tools/open_phacts_explorer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0202,
         edam:topic_2258,
@@ -341881,7 +357849,7 @@ View datasets from the City of Vancouver, BC, Canada. Download data in various f
         "Open PHACTS support portal" .
 
 <https://bio.tools/open_targets_genetics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web API",
         "Web application",
@@ -341909,22 +357877,18 @@ The portal aggregates and merges genetic associations curated from both literatu
 
 <https://bio.tools/open_tg-gates> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0842" ;
-            sc:name "Identifier" ;
-            sc:sameAs "http://edamontology.org/data_0842" ],
+            sc:additionalType "http://edamontology.org/data_0842" ;
+            sc:name "Identifier" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web API" ;
     sc:applicationSubCategory edam:topic_0622 ;
@@ -341940,7 +357904,7 @@ The portal aggregates and merges genetic associations curated from both literatu
     biotools:primaryContact "Hiroshi Yamada" .
 
 <https://bio.tools/openabm-covid19> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3305,
@@ -341957,7 +357921,7 @@ OpenABM-Covid19: Agent-based model for modelling the Covid-19 epidemic.""" ;
     sc:url "https://github.com/BDI-pathogens/OpenABM-Covid19" .
 
 <https://bio.tools/openalea> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_0780,
@@ -341975,7 +357939,7 @@ OpenABM-Covid19: Agent-based model for modelling the Covid-19 epidemic.""" ;
     biotools:primaryContact "guillaume.garin@itkweb.com" .
 
 <https://bio.tools/openannotate> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3277,
@@ -341994,7 +357958,7 @@ OpenABM-Covid19: Agent-based model for modelling the Covid-19 epidemic.""" ;
     biotools:primaryContact <https://orcid.org/0000-0002-7533-3753> .
 
 <https://bio.tools/openastexviewer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3047,
         edam:topic_3336,
@@ -342010,7 +357974,7 @@ OpenABM-Covid19: Agent-based model for modelling the Covid-19 epidemic.""" ;
     sc:url "http://openastexviewer.net/web/" .
 
 <https://bio.tools/openawsem> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0130,
@@ -342035,7 +357999,7 @@ The OpenAWSEM code is currently being tested. Use at your own risk. And let us k
     sc:url "https://github.com/npschafer/openawsem" .
 
 <https://bio.tools/openbiolink> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0769,
@@ -342052,7 +358016,7 @@ OpenBioLink is a resource and evaluation framework for evaluating link predictio
     sc:url "https://github.com/OpenBioLink/OpenBioLink" .
 
 <https://bio.tools/openbreast> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -342070,7 +358034,7 @@ OpenBioLink is a resource and evaluation framework for evaluating link predictio
     biotools:primaryContact "Said Pertuz" .
 
 <https://bio.tools/opencarp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_3344 ;
@@ -342087,7 +358051,7 @@ OpenBioLink is a resource and evaluation framework for evaluating link predictio
     sc:url "https://www.openCARP.org" .
 
 <https://bio.tools/opencell> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0602,
         edam:topic_0621,
@@ -342103,7 +358067,7 @@ OpenBioLink is a resource and evaluation framework for evaluating link predictio
     biotools:primaryContact <https://orcid.org/0000-0002-4881-405X> .
 
 <https://bio.tools/openchem> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0209,
@@ -342123,18 +358087,18 @@ OpenChem is a deep learning toolkit for Computational Chemistry with PyTorch bac
 
 <https://bio.tools/openchrom> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3650" ;
+            sc:name "Mass spectrometry spectra" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0944" ;
-            sc:name "Peptide mass fingerprint" ;
-            sc:sameAs "http://edamontology.org/data_0944" ],
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3508" ;
+            sc:name "Image" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0944" ;
+            sc:encodingFormat "http://edamontology.org/format_3620" ;
+            sc:name "Peptide mass fingerprint" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0121,
@@ -342158,7 +358122,7 @@ OpenChem is a deep learning toolkit for Computational Chemistry with PyTorch bac
     sc:url "https://www.openchrom.net/" .
 
 <https://bio.tools/opencmiss> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2259,
         edam:topic_3398,
@@ -342173,7 +358137,7 @@ OpenChem is a deep learning toolkit for Computational Chemistry with PyTorch bac
     biotools:primaryContact "ChrisBradley" .
 
 <https://bio.tools/opencontami> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_2229,
@@ -342191,7 +358155,7 @@ OpenChem is a deep learning toolkit for Computational Chemistry with PyTorch bac
     sc:url "https://openlooper.hgc.jp/opencontami/" .
 
 <https://bio.tools/opencyto> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2229,
@@ -342211,28 +358175,8 @@ OpenChem is a deep learning toolkit for Computational Chemistry with PyTorch bac
     sc:url "http://bioconductor.org/packages/release/bioc/html/openCyto.html" ;
     biotools:primaryContact "Mike Jiang" .
 
-<https://bio.tools/opendata> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3302,
-        edam:topic_3324,
-        edam:topic_3325 ;
-    sc:citation <https://doi.org/10.1371/JOURNAL.PONE.0225508>,
-        "pmcid:PMC6879140",
-        "pubmed:31770393" ;
-    sc:description """Parasitic infections and medical expenses according to Health Insurance Review Assessment claims data in South Korea, 2011-2018.
-
-1월 15일부터 SAS Studio는 windows10 환경에 internet Explorer 브라우져에서만 사용이 가능합니다.
-
-의료빅데이터 연구과제 이용 관련 변경사항 안내 2019-07-05.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'anisakiasis', 'anisakiasis pinworm', 'cysticercosis anisakiasis pinworm', 'claims cysticercosis anisakiasis pinworm'""" ;
-    sc:featureList edam:operation_0531,
-        edam:operation_2939,
-        edam:operation_3891 ;
-    sc:name "opendata" ;
-    sc:url "http://opendata.hira.or.kr" .
-
 <https://bio.tools/opendose> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_3303,
         edam:topic_3315,
@@ -342249,10 +358193,10 @@ If you wish to receive the OpenDose newsletter, send an email to this link. You
 
 <https://bio.tools/openebench> a sc:SoftwareApplication ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0958" ;
-            sc:name "Tool metadata" ;
-            sc:sameAs "http://edamontology.org/data_0958" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0958" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Tool metadata" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Bioinformatics portal",
         "Web API",
         "Web application" ;
@@ -342273,8 +358217,26 @@ If you wish to receive the OpenDose newsletter, send an email to this link. You
     sc:softwareVersion "v3" ;
     sc:url "https://openebench.bsc.es/" .
 
+<https://bio.tools/openehr-to-fhir> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_2815,
+        edam:topic_3063 ;
+    sc:citation <https://doi.org/10.3233/SHTI210963>,
+        "pubmed:35062196" ;
+    sc:description "Converting openEHR Compositions to Fast Healthcare Interoperability Resources (FHIR) for the German Corona Consensus Dataset (GECCO)." ;
+    sc:featureList edam:operation_0335,
+        edam:operation_3762 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "openEHR-to-FHIR" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://gitlab.plri.de/NektariosLadas/openehr-to-fhir" .
+
 <https://bio.tools/openep> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_3297,
         edam:topic_3303,
@@ -342292,7 +358254,7 @@ The application of short electric pulses to biological tissues have spread acros
     sc:url "https://github.com/LSC-UBA/OpenEP" .
 
 <https://bio.tools/openflu> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0622 ;
     sc:description "The OpenFlu database (OpenFluDB) is part of a collaborative effort to share observations on the evolution of Influenza virus in both animals and humans. It contains genomic and protein sequences as well as epidemiological data from more than 25'000 isolates." ;
@@ -342306,7 +358268,7 @@ The application of short electric pulses to biological tissues have spread acros
     biotools:primaryContact "Robin Liechti" .
 
 <https://bio.tools/openfluo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_3318,
@@ -342322,7 +358284,7 @@ The application of short electric pulses to biological tissues have spread acros
     biotools:primaryContact "Fabienne Dupuy" .
 
 <https://bio.tools/opengraphgym> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3474 ;
@@ -342336,7 +358298,7 @@ This is the code published for the paper "OpenGraphGym: A Parallel Reinforcement
     sc:url "https://github.com/zwj3652011/OpenGraphGym.git" .
 
 <https://bio.tools/opengrowth> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0128,
@@ -342351,7 +358313,7 @@ This is the code published for the paper "OpenGraphGym: A Parallel Reinforcement
     sc:url "http://faculty.chemistry.harvard.edu/shakhnovich/software/opengrowth" .
 
 <https://bio.tools/opengwas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Database portal" ;
     sc:applicationSubCategory edam:topic_0102,
@@ -342371,7 +358333,7 @@ The OpenGWAS database is constantly growing, but there may be studies that users
     sc:url "https://gwas.mrcieu.ac.uk" .
 
 <https://bio.tools/openhicamm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3383,
@@ -342389,7 +358351,7 @@ The OpenGWAS database is constantly growing, but there may be studies that users
     biotools:primaryContact "Erwin Frise" .
 
 <https://bio.tools/openhsv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3067,
         edam:topic_3300,
@@ -342414,7 +358376,7 @@ The OpenGWAS database is constantly growing, but there may be studies that users
     sc:url "https://github.com/anki-xyz/openhsv" .
 
 <https://bio.tools/openhusar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0081,
@@ -342433,7 +358395,7 @@ The OpenGWAS database is constantly growing, but there may be studies that users
     biotools:primaryContact "HUSAR Support" .
 
 <https://bio.tools/openmandible> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3300,
         edam:topic_3405,
@@ -342448,16 +358410,51 @@ Computer simulations enhanced the development of many medical devices and have b
     sc:name "OpenMandible" ;
     sc:url "https://github.com/ArsoVukicevic/OpenMandible" .
 
+<https://bio.tools/openmdlr> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0176,
+        edam:topic_3316 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC307>,
+        "pubmed:35512391" ;
+    sc:description "Parallel, open-source tools for general protein structure modeling and refinement from pairwise distances." ;
+    sc:featureList edam:operation_0244,
+        edam:operation_0322,
+        edam:operation_2476 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "OpenMDlr" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/BSDExabio/OpenMDlr-amber" .
+
+<https://bio.tools/openmha> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3372 ;
+    sc:citation <https://doi.org/10.1016/J.SOFTX.2021.100953>,
+        "pmcid:PMC9022875",
+        "pubmed:35465173" ;
+    sc:description "Open community platform for hearing aid algorithm research." ;
+    sc:featureList edam:operation_3937 ;
+    sc:isAccessibleForFree true ;
+    sc:name "openMHA" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://www.openmha.org" .
+
 <https://bio.tools/openmm> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3108" ;
-            sc:name "Experimental measurement" ;
-            sc:sameAs "http://edamontology.org/data_3108" ] ;
+            sc:additionalType "http://edamontology.org/data_3108" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Experimental measurement" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0602 ;
@@ -342476,28 +358473,37 @@ Computer simulations enhanced the development of many medical devices and have b
     sc:url "http://openmm.org/" ;
     biotools:primaryContact "Peter Eastman" .
 
+<https://bio.tools/openmole> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:citation <https://doi.org/10.1186/1758-2946-5-39> ;
+    sc:description "OpenMOLE has been developed since 2008 as a free and open-source platform. It offers tools to run, explore, diagnose and optimize your numerical model, taking advantage of distributed computing environments. With OpenMOLE you can explore your already developed model, in any language (Java, Binary exe, NetLogo, R, SciLab, Python, C++, etc.)" ;
+    sc:isAccessibleForFree true ;
+    sc:name "OpenMole" ;
+    sc:softwareHelp <https://openmole.org/Documentation.html> ;
+    sc:url "https://openmole.org/" .
+
 <https://bio.tools/openms> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ],
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:encodingFormat "http://edamontology.org/format_3683" ;
+            sc:name "Mass spectrometry data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ],
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:encodingFormat "http://edamontology.org/format_3683" ;
+            sc:name "Sequence record" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_3683" ;
+            sc:name "Peptide identification" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ],
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_3683" ;
+            sc:name "Expression data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_3683" ;
+            sc:name "Peptide identification" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Workbench" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -342549,14 +358555,14 @@ Computer simulations enhanced the development of many medical devices and have b
 
 <https://bio.tools/openmzxy> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3682" ;
+            sc:name "Mass spectrometry spectra" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_1637" ;
+            sc:name "Mass spectrometry spectra" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0153,
@@ -342573,7 +358579,7 @@ Computer simulations enhanced the development of many medical devices and have b
     sc:url "http://lababi.bioprocess.org/index.php/lababi-software/79-openmzxy" .
 
 <https://bio.tools/openpepxl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -342595,7 +358601,7 @@ OpenPepXL is a protein-protein cross-link identification tool implemented in C++
     sc:url "https://openms.org/openpepxl" .
 
 <https://bio.tools/openphacts-vis-compoundinfo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3336 ;
     sc:citation <https://doi.org/10.1186/1758-2946-6-s1-p52> ;
@@ -342611,7 +358617,7 @@ OpenPepXL is a protein-protein cross-link identification tool implemented in C++
     biotools:primaryContact "Openphacts" .
 
 <https://bio.tools/openphi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3382,
@@ -342629,8 +358635,29 @@ OpenPepXL is a protein-protein cross-link identification tool implemented in C++
         "Windows" ;
     sc:url "https://gitlab.com/BioimageInformaticsGroup/openphi" .
 
+<https://bio.tools/openpip> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0121,
+        edam:topic_0128,
+        edam:topic_3957 ;
+    sc:citation <https://doi.org/10.1016/J.JMB.2022.167603>,
+        "pubmed:35662469" ;
+    sc:description "An Open-source Platform for Hosting, Visualizing and Analyzing Protein Interaction Data." ;
+    sc:featureList edam:operation_3431,
+        edam:operation_3435,
+        edam:operation_3925 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "openPIP" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://openpip.baderlab.org/" .
+
 <https://bio.tools/openponk> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3372 ;
     sc:author <https://orcid.org/0000-0002-5280-7151>,
@@ -342650,7 +358677,7 @@ OpenPepXL is a protein-protein cross-link identification tool implemented in C++
         <https://orcid.org/0000-0003-2980-4400> .
 
 <https://bio.tools/openprimer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0632 ;
     sc:description "An implementation of methods for designing, evaluating, and comparing primer sets for multiplex PCR. Primers are designed by solving a set cover problem such that the number of covered template sequences is maximized with the smallest possible set of primers. To guarantee that high-quality primers are generated, only primers fulfilling constraints on their physicochemical properties are selected." ;
@@ -342668,7 +358695,7 @@ OpenPepXL is a protein-protein cross-link identification tool implemented in C++
     biotools:primaryContact "Matthias Döring" .
 
 <https://bio.tools/openprimerui> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0632 ;
     sc:description "A Shiny application providing methods for designing, evaluating, and comparing primer sets for multiplex polymerase chain reaction. Primers are designed by solving a set cover problem such that the number of covered template sequences is maximized with the smallest possible set of primers. To guarantee that high-quality primers are generated, only primers fulfilling constraints on their physicochemical properties are selected." ;
@@ -342686,7 +358713,7 @@ OpenPepXL is a protein-protein cross-link identification tool implemented in C++
     biotools:primaryContact "Matthias Döring" .
 
 <https://bio.tools/openprot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0659,
@@ -342706,7 +358733,7 @@ OpenProt is the first database that enforces a polycistronic model of eukaryotic
     sc:url "https://openprot.org/" .
 
 <https://bio.tools/opensafely> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3263,
         edam:topic_3305,
@@ -342721,8 +358748,22 @@ OpenProt is the first database that enforces a polycistronic model of eukaryotic
     sc:url "https://opensafely.org/" ;
     biotools:primaryContact <https://orcid.org/0000-0002-5127-4728> .
 
+<https://bio.tools/opensim> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workbench" ;
+    sc:applicationSubCategory edam:topic_0621,
+        edam:topic_2815,
+        edam:topic_3068 ;
+    sc:citation <https://doi.org/10.1016/J.MEDENGPHY.2022.103790>,
+        "pubmed:35500997" ;
+    sc:description "A model for estimating lower back kinetics in gait." ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "OpenSim" ;
+    sc:url "https://simtk.org/projects/emg_opt_tool" .
+
 <https://bio.tools/opensmog> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_2229,
@@ -342745,10 +358786,9 @@ OpenProt is the first database that enforces a polycistronic model of eukaryotic
 
 <https://bio.tools/opensnp> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:name "Sequence variations" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_3574 ;
     sc:citation <https://doi.org/10.1371/journal.pone.0089204>,
@@ -342762,7 +358802,7 @@ OpenProt is the first database that enforces a polycistronic model of eukaryotic
     sc:url "https://www.opensnp.org" .
 
 <https://bio.tools/openspim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3382,
         edam:topic_3385 ;
@@ -342777,7 +358817,7 @@ OpenProt is the first database that enforces a polycistronic model of eukaryotic
     sc:url "http://openspim.org/" .
 
 <https://bio.tools/openstats> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0769,
@@ -342795,10 +358835,10 @@ A Robust and Scalable Software Package for Reproducible Analysis of High-Through
 
 <https://bio.tools/opentims> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrum" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_1957" ;
+            sc:name "Mass spectrum" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -342813,7 +358853,7 @@ A Robust and Scalable Software Package for Reproducible Analysis of High-Through
     sc:url "http://www.github.com/michalsta/opentims" .
 
 <https://bio.tools/opentree> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Web API",
         "Web application" ;
@@ -342840,14 +358880,12 @@ A Robust and Scalable Software Package for Reproducible Analysis of High-Through
 
 <https://bio.tools/opentrials> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web API" ;
     sc:applicationSubCategory edam:topic_3379 ;
@@ -342862,8 +358900,29 @@ A Robust and Scalable Software Package for Reproducible Analysis of High-Through
     sc:url "https://opentrials.net/" ;
     biotools:primaryContact "Ben Goldacre" .
 
+<https://bio.tools/openweedlocator_owl> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0749,
+        edam:topic_0780,
+        edam:topic_3810 ;
+    sc:citation <https://doi.org/10.1038/S41598-021-03858-9>,
+        "pmcid:PMC8741824",
+        "pubmed:34996963" ;
+    sc:description "An open-source, low-cost device for fallow weed detection." ;
+    sc:featureList edam:operation_2428,
+        edam:operation_3454 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "OpenWeedLocator OWL" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://github.com/geezacoleman/OpenWeedLocator/blob/main/CODE_OF_CONDUCT.md> ;
+    sc:url "https://github.com/geezacoleman/OpenWeedLocator" .
+
 <https://bio.tools/opera> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0196,
@@ -342877,7 +358936,7 @@ A Robust and Scalable Software Package for Reproducible Analysis of High-Through
     sc:url "http://sourceforge.net/projects/operasf/" .
 
 <https://bio.tools/opera-lg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196 ;
     sc:citation <https://doi.org/10.1186/s13059-016-0951-y> ;
@@ -342890,7 +358949,7 @@ A Robust and Scalable Software Package for Reproducible Analysis of High-Through
     sc:url "https://sourceforge.net/projects/operasf/" .
 
 <https://bio.tools/opera-qsar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0154,
@@ -342910,22 +358969,22 @@ A Robust and Scalable Software Package for Reproducible Analysis of High-Through
 
 <https://bio.tools/operamate> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2082" ;
-            sc:name "Matrix" ;
-            sc:sameAs "http://edamontology.org/data_2082" ] ;
+            sc:additionalType "http://edamontology.org/data_2082" ;
+            sc:encodingFormat "http://edamontology.org/format_1632" ;
+            sc:name "Matrix" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ],
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Plot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ],
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Image" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_1775,
@@ -342947,7 +359006,7 @@ A Robust and Scalable Software Package for Reproducible Analysis of High-Through
     biotools:primaryContact "Chenglin Liu" .
 
 <https://bio.tools/operonseqer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0114,
         edam:topic_0780,
@@ -342968,8 +359027,32 @@ A Robust and Scalable Software Package for Reproducible Analysis of High-Through
         "Windows" ;
     sc:url "https://github.com/sandialabs/OperonSEQer" .
 
+<https://bio.tools/opfi> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0196,
+        edam:topic_3174,
+        edam:topic_3297,
+        edam:topic_3837 ;
+    sc:citation <https://doi.org/10.21105/JOSS.03678>,
+        "pmcid:PMC9017871",
+        "pubmed:35445164" ;
+    sc:description "A Python package for identifying gene clusters in large genomics and metagenomics data sets." ;
+    sc:featureList edam:operation_0310,
+        edam:operation_0337,
+        edam:operation_3432 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "Opfi" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://github.com/wilkelab/Opfi/blob/master/CODE-OF-CONDUCT.md>,
+        <https://opfi.readthedocs.io/en/latest/installation.html> ;
+    sc:url "https://github.com/wilkelab/Opfi" .
+
 <https://bio.tools/ophid> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_3489 ;
@@ -342986,8 +359069,26 @@ tissue specific PPI networks across species.""" ;
     sc:name "ophid" ;
     sc:url "http://ophid.utoronto.ca/iid" .
 
+<https://bio.tools/opi> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0108,
+        edam:topic_2269 ;
+    sc:citation <https://doi.org/10.1101/2021.11.08.467428> ;
+    sc:description "Open Perimetry Interface (OPI) for simulating and controlling visual field machines using R" ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3435 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "OPI" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://cran.r-project.org/web/packages/OPI/OPI.pdf> ;
+    sc:url "https://CRAN.R-project.org/package=OPI" .
+
 <https://bio.tools/opm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0154,
@@ -343008,7 +359109,7 @@ tissue specific PPI networks across species.""" ;
     biotools:primaryContact "Andrei Lomize" .
 
 <https://bio.tools/opossom> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -343028,7 +359129,7 @@ tissue specific PPI networks across species.""" ;
     biotools:primaryContact "Henry Loeffler-Wirth" .
 
 <https://bio.tools/opossom-browser> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0625,
@@ -343050,7 +359151,7 @@ oposSOM is a comprehensive data analysis software combining diversity analyses,
     sc:url "http://www.izbi.uni-leipzig.de/opossom-browser" .
 
 <https://bio.tools/opossum> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0749,
@@ -343073,7 +359174,7 @@ oposSOM is a comprehensive data analysis software combining diversity analyses,
     biotools:primaryContact "Support" .
 
 <https://bio.tools/oppar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2640,
@@ -343094,7 +359195,7 @@ oposSOM is a comprehensive data analysis software combining diversity analyses,
     biotools:primaryContact "Soroor Hediyeh zadeh" .
 
 <https://bio.tools/opph> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_3293,
@@ -343108,8 +359209,31 @@ oposSOM is a comprehensive data analysis software combining diversity analyses,
     sc:url "http://vlsi.cs.ucf.edu/nsf/software/opph/" ;
     biotools:primaryContact "Ravi VijayaSatya" .
 
+<https://bio.tools/opplncrna> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0602,
+        edam:topic_0659,
+        edam:topic_3170,
+        edam:topic_3512,
+        edam:topic_3518 ;
+    sc:citation <https://doi.org/10.1007/S12010-022-04025-0>,
+        "pubmed:35802238" ;
+    sc:description "A MATLAB Package for Comprehensive Pathway Analysis of lncRNA-miRNA-mRNA in Humans." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_3792,
+        edam:operation_3928 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Apache-2.0" ;
+    sc:name "opplncRNA" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://github.com/HangZhouSheep/opplncRNA/files/8685063/Instruction.pdf> ;
+    sc:url "https://github.com/HangZhouSheep/opplncRNA" .
+
 <https://bio.tools/opsef> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3383,
@@ -343129,7 +359253,7 @@ Here, we present OpSeF, a Python framework for deep-learning based semantic segm
     sc:url "https://github.com/trasse/OpSeF-IV" .
 
 <https://bio.tools/opt-SNE> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0749,
@@ -343156,7 +359280,7 @@ opt-SNE was developed to solve two fundamental problems with t-SNE. The first is
     sc:url "http://www.omiq.ai/opt-SNE" .
 
 <https://bio.tools/opt-sgrna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3168,
@@ -343174,7 +359298,7 @@ The CRISPR Cas9 system is currently considered as the most advanced tool used fo
     sc:url "https://github.com/Jie-lan/OPT-sgRNA" .
 
 <https://bio.tools/optcluster> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3307,
@@ -343196,7 +359320,7 @@ The CRISPR Cas9 system is currently considered as the most advanced tool used fo
         "Susmita Datta" .
 
 <https://bio.tools/optconet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_3303,
         edam:topic_3384,
@@ -343214,7 +359338,7 @@ OptCoNet: An Optimized Convolutional Neural Network for an Automatic Diagnosis o
     sc:url "https://github.com/biomedicallabecenitsilchar/optconet" .
 
 <https://bio.tools/optflux> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0625,
@@ -343233,7 +359357,7 @@ OptCoNet: An Optimized Convolutional Neural Network for an Automatic Diagnosis o
     biotools:primaryContact "Support" .
 
 <https://bio.tools/optiSel> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3056 ;
@@ -343254,7 +359378,7 @@ OptCoNet: An Optimized Convolutional Neural Network for an Automatic Diagnosis o
     biotools:primaryContact "Robin Wellmann" .
 
 <https://bio.tools/optimade> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_3071,
@@ -343277,7 +359401,7 @@ OptCoNet: An Optimized Convolutional Neural Network for an Automatic Diagnosis o
     sc:url "https://jarvis.nist.gov/optimade" .
 
 <https://bio.tools/optimal-feature-selection-knn-classifier> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3305,
@@ -343295,7 +359419,7 @@ OptCoNet: An Optimized Convolutional Neural Network for an Automatic Diagnosis o
     biotools:primaryContact "Abhishek Gupta" .
 
 <https://bio.tools/optimalflow> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3474,
@@ -343315,7 +359439,7 @@ optimalFlow: optimal-transport approach to Flow Cytometry analysis.""" ;
     sc:url "https://bioconductor.org/packages/optimalFlow" .
 
 <https://bio.tools/optimaltreatmentstrategies> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344 ;
@@ -343331,7 +359455,7 @@ optimalFlow: optimal-transport approach to Flow Cytometry analysis.""" ;
     biotools:primaryContact "Sulav Duwal" .
 
 <https://bio.tools/optimia> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3325,
@@ -343344,7 +359468,7 @@ optimalFlow: optimal-transport approach to Flow Cytometry analysis.""" ;
     sc:url "https://github.com/wxwx1993/Bayesian_IA_Timing" .
 
 <https://bio.tools/optimizer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0623,
@@ -343367,7 +359491,7 @@ optimalFlow: optimal-transport approach to Flow Cytometry analysis.""" ;
     biotools:primaryContact "Santiago Garcia-Vallvé" .
 
 <https://bio.tools/optimol> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0209,
@@ -343387,8 +359511,27 @@ A new Variational Auto-Encoder (VAE) architecture that goes from a molecular gra
     sc:name "OptiMol" ;
     sc:url "http://csb.cs.mcgill.ca/optimol" .
 
+<https://bio.tools/optimus> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_3070,
+        edam:topic_3307,
+        edam:topic_3315 ;
+    sc:citation <https://doi.org/10.1101/2022.01.18.476810> ;
+    sc:description "A general purpose adaptive optimisation engine in R." ;
+    sc:featureList edam:operation_2476,
+        edam:operation_3431 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "Optimus" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://github.com/SahakyanLab/Optimus/tree/master/documentation> ;
+    sc:url "http://github.com/SahakyanLab/Optimus" .
+
 <https://bio.tools/optimus_primer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:citation <https://doi.org/10.1186/1756-0500-3-185> ;
@@ -343402,8 +359545,16 @@ A new Variational Auto-Encoder (VAE) architecture that goes from a molecular gra
     sc:url "http://op.pgx.ca" ;
     biotools:primaryContact "Guillaume Lettre" .
 
+<https://bio.tools/optimusqual> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:citation <https://doi.org/10.1186/s12859-016-1287-z> ;
+    sc:description "Boolean regulatory network reconstruction using literature based knowledge." ;
+    sc:name "optimusQual" ;
+    sc:softwareHelp <https://ftp.vital-it.ch/tools/optimusqual/quick_start.pdf> ;
+    sc:url "https://www.vital-it.ch/software/optimusqual" .
+
 <https://bio.tools/optitope> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0199,
@@ -343426,14 +359577,33 @@ A new Variational Auto-Encoder (VAE) architecture that goes from a molecular gra
     biotools:primaryContact "Toussaint N.C." .
 
 <https://bio.tools/optitype> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "OptiType is a novel HLA genotyping algorithm based on integer linear programming, capable of producing accurate 4-digit HLA genotyping predictions from NGS data by simultaneously selecting all major and minor HLA Class I alleles." ;
     sc:name "OptiType" ;
     sc:softwareVersion "v1.3.5" ;
     sc:url "https://github.com/FRED-2/OptiType" .
 
+<https://bio.tools/optm> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_2885,
+        edam:topic_3056,
+        edam:topic_3796 ;
+    sc:citation <https://doi.org/10.1093/BIOMETHODS/BPAB017>,
+        "pmcid:PMC8476930",
+        "pubmed:34595352" ;
+    sc:description "Estimating the optimal number of migration edges from 'Treemix'." ;
+    sc:featureList edam:operation_3196,
+        edam:operation_3435 ;
+    sc:isAccessibleForFree true ;
+    sc:name "OptM" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://rfitak.shinyapps.io/OptM/" .
+
 <https://bio.tools/optnetaligncpp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0602,
@@ -343447,8 +359617,30 @@ A new Variational Auto-Encoder (VAE) architecture that goes from a molecular gra
     sc:url "https://github.com/crclark/optnetaligncpp" ;
     biotools:primaryContact "Connor Clark" .
 
+<https://bio.tools/optocoder> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_3168,
+        edam:topic_3308,
+        edam:topic_3382,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1093/NARGAB/LQAC042>,
+        "pmcid:PMC9172073",
+        "pubmed:35685220" ;
+    sc:description "Optocoder is a computational framework that processes microscopy images to decode bead barcodes in space. It efficiently aligns images, detects beads, and corrects for confounding factors of the fluorescence signal, such as crosstalk and phasing. Furthermore, Optocoder employs supervised machine learning to strongly increase the number of matches between optically decoded and sequenced barcodes." ;
+    sc:featureList edam:operation_3185,
+        edam:operation_3443,
+        edam:operation_3454 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "Optocoder" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/rajewsky-lab/optocoder" .
+
 <https://bio.tools/optometrika> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3318,
@@ -343465,8 +359657,15 @@ A new Variational Auto-Encoder (VAE) architecture that goes from a molecular gra
     sc:url "https://www.mathworks.com/matlabcentral/fileexchange/45355-optometrika" ;
     biotools:primaryContact "Yury" .
 
+<https://bio.tools/optpbn> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:description "Probabilistic Boolean Networks simulator" ;
+    sc:isAccessibleForFree true ;
+    sc:name "optPBN" ;
+    sc:url "https://sourceforge.net/projects/optpbn/" .
+
 <https://bio.tools/optpdt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_2885,
@@ -343482,7 +359681,7 @@ A new Variational Auto-Encoder (VAE) architecture that goes from a molecular gra
     biotools:primaryContact "Ren-Hua Chung" .
 
 <https://bio.tools/opus-fold> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0130,
@@ -343502,7 +359701,7 @@ We propose a protein folding framework, named OPUS-Fold, which can integrate var
     sc:url "https://github.com/thuxugang/opus_fold" .
 
 <https://bio.tools/opus-refine> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -343521,7 +359720,7 @@ Protein backbone torsion angles (Phi and Psi) are crucial for protein local conf
     sc:url "https://github.com/thuxugang/opus_refine" .
 
 <https://bio.tools/opus-rota3> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0121,
@@ -343539,7 +359738,7 @@ Side-chain modeling is critical for protein structure prediction since the uniqu
     sc:url "https://github.com/thuxugang/opus_rota3" .
 
 <https://bio.tools/opus-rota4> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0130,
@@ -343560,7 +359759,7 @@ Side-chain modeling is critical for protein structure prediction since the uniqu
     sc:url "https://github.com/OPUS-MaLab/opus_rota4" .
 
 <https://bio.tools/opus-ssri> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0611,
         edam:topic_3303,
@@ -343578,7 +359777,7 @@ Side-chain modeling is critical for protein structure prediction since the uniqu
     sc:url "https://github.com/alncat/cryoem" .
 
 <https://bio.tools/opus-tass> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_3474,
@@ -343596,7 +359795,7 @@ Predictions of protein backbone torsion angles (ϕ and ψ) and secondary structu
     sc:url "https://github.com/thuxugang/opus_tass" .
 
 <https://bio.tools/opus-x> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0130,
@@ -343614,7 +359813,7 @@ Predictions of protein backbone torsion angles (ϕ and ψ) and secondary structu
     biotools:primaryContact <https://orcid.org/0000-0003-2943-0779> .
 
 <https://bio.tools/opweight> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2885,
         edam:topic_3063,
@@ -343633,7 +359832,7 @@ Predictions of protein backbone torsion angles (ϕ and ψ) and secondary structu
     biotools:primaryContact "Mohamad Hasan" .
 
 <https://bio.tools/oqtans> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0099,
@@ -343653,7 +359852,7 @@ Predictions of protein backbone torsion angles (ϕ and ψ) and secondary structu
         "Vipin T. Sreedharan" .
 
 <https://bio.tools/or> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_2814 ;
@@ -343670,22 +359869,19 @@ Predictions of protein backbone torsion angles (ϕ and ψ) and secondary structu
 
 <https://bio.tools/orange> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0582" ;
-            sc:name "Ontology" ;
-            sc:sameAs "http://edamontology.org/data_0582" ],
+            sc:additionalType "http://edamontology.org/data_0582" ;
+            sc:name "Ontology" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2082" ;
-            sc:name "Matrix" ;
-            sc:sameAs "http://edamontology.org/data_2082" ] ;
+            sc:additionalType "http://edamontology.org/data_2082" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Matrix" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0582" ;
-            sc:name "Ontology" ;
-            sc:sameAs "http://edamontology.org/data_0582" ],
+            sc:additionalType "http://edamontology.org/data_0582" ;
+            sc:name "Ontology" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2082" ;
-            sc:name "Matrix" ;
-            sc:sameAs "http://edamontology.org/data_2082" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2082" ;
+            sc:name "Matrix" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0091,
@@ -343743,7 +359939,7 @@ Predictions of protein backbone torsion angles (ϕ and ψ) and secondary structu
         "Janez Demsar" .
 
 <https://bio.tools/orange-bioinformatics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_3473 ;
@@ -343762,22 +359958,20 @@ Predictions of protein backbone torsion angles (ϕ and ψ) and secondary structu
 
 <https://bio.tools/orange_network> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2082" ;
-            sc:name "Matrix" ;
-            sc:sameAs "http://edamontology.org/data_2082" ],
+            sc:additionalType "http://edamontology.org/data_2353" ;
+            sc:name "Ontology data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2353" ;
-            sc:name "Ontology data" ;
-            sc:sameAs "http://edamontology.org/data_2353" ] ;
+            sc:additionalType "http://edamontology.org/data_2082" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Matrix" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2353" ;
-            sc:name "Ontology data" ;
-            sc:sameAs "http://edamontology.org/data_2353" ],
+            sc:additionalType "http://edamontology.org/data_2353" ;
+            sc:name "Ontology data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2082" ;
-            sc:name "Matrix" ;
-            sc:sameAs "http://edamontology.org/data_2082" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2082" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Matrix" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -343801,7 +359995,7 @@ Predictions of protein backbone torsion angles (ϕ and ψ) and secondary structu
     biotools:primaryContact "Blaž Zupan" .
 
 <https://bio.tools/orbit-rt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3303,
@@ -343815,14 +360009,12 @@ Predictions of protein backbone torsion angles (ϕ and ψ) and secondary structu
 
 <https://bio.tools/orcae> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0842" ;
-            sc:name "Identifier" ;
-            sc:sameAs "http://edamontology.org/data_0842" ] ;
+            sc:additionalType "http://edamontology.org/data_0842" ;
+            sc:name "Identifier" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:name "Annotation track" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0085 ;
     sc:citation <https://doi.org/10.1038/nmeth.2242> ;
@@ -343839,7 +360031,7 @@ Predictions of protein backbone torsion angles (ϕ and ψ) and secondary structu
     biotools:primaryContact "Yves Van de Peer" .
 
 <https://bio.tools/orchid> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0199,
@@ -343858,14 +360050,13 @@ Predictions of protein backbone torsion angles (ϕ and ψ) and secondary structu
 
 <https://bio.tools/orcid> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0842" ;
-            sc:name "Identifier" ;
-            sc:sameAs "http://edamontology.org/data_0842" ] ;
+            sc:additionalType "http://edamontology.org/data_0842" ;
+            sc:name "Identifier" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API" ;
     sc:applicationSubCategory edam:topic_3345 ;
     sc:citation <https://doi.org/10.1087/20120404> ;
@@ -343880,7 +360071,7 @@ Predictions of protein backbone torsion angles (ϕ and ψ) and secondary structu
     biotools:primaryContact "Laurel L. HAAK" .
 
 <https://bio.tools/orcom> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3168 ;
@@ -343893,7 +360084,7 @@ Predictions of protein backbone torsion angles (ϕ and ψ) and secondary structu
     sc:url "http://sun.aei.polsl.pl/REFRESH/index.php?page=projects&project=orcom&subpage=about" .
 
 <https://bio.tools/ordensity> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0634,
@@ -343913,7 +360104,7 @@ In this repository is located the R package ORdensity that implements the statis
     sc:url "https://github.com/rsait/ORdensity" .
 
 <https://bio.tools/orderedlist> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -343934,14 +360125,13 @@ In this repository is located the R package ORdensity that implements the statis
 
 <https://bio.tools/ordo> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2800" ;
-            sc:name "Orpha number" ;
-            sc:sameAs "http://edamontology.org/data_2800" ] ;
+            sc:additionalType "http://edamontology.org/data_2800" ;
+            sc:name "Orpha number" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0967" ;
-            sc:name "Ontology concept data" ;
-            sc:sameAs "http://edamontology.org/data_0967" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0967" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Ontology concept data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Ontology",
         "Web application" ;
@@ -343967,7 +360157,7 @@ In this repository is located the R package ORdensity that implements the statis
     biotools:primaryContact "Contact Form" .
 
 <https://bio.tools/ordpy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3068,
@@ -343988,7 +360178,7 @@ In this repository is located the R package ORdensity that implements the statis
     sc:url "http://github.com/arthurpessa/ordpy" .
 
 <https://bio.tools/oreganno> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0203,
@@ -344008,7 +360198,7 @@ In this repository is located the R package ORdensity that implements the statis
     biotools:primaryContact "S. J. M. Jones" .
 
 <https://bio.tools/orest> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0769,
@@ -344022,7 +360212,7 @@ In this repository is located the R package ORdensity that implements the statis
     sc:url "http://mips.gsf.de/genre/proj/orest/index.html" .
 
 <https://bio.tools/orf-figure-generator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0108,
@@ -344039,7 +360229,7 @@ In this repository is located the R package ORdensity that implements the statis
     biotools:primaryContact "Turner Conrad" .
 
 <https://bio.tools/orfer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080 ;
@@ -344056,7 +360246,7 @@ In this repository is located the R package ORdensity that implements the statis
     sc:url "http://www.proteinstrukturfabrik.de/orfer/" .
 
 <https://bio.tools/orfhunter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_3047,
@@ -344075,7 +360265,7 @@ The ORFhunteR package is a R and C++ library for an automatic identification and
     sc:url "http://orfhunter.bsu.by" .
 
 <https://bio.tools/orfik> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0085,
         edam:topic_3168,
@@ -344093,7 +360283,7 @@ The ORFhunteR package is a R and C++ library for an automatic identification and
     biotools:primaryContact "Kornel Labun" .
 
 <https://bio.tools/orfipy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3170,
@@ -344112,7 +360302,7 @@ orfipy is a tool written in python/cython to extract ORFs in extremely an fast a
     sc:url "https://anaconda.org/bioconda/orfipy" .
 
 <https://bio.tools/orfline> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0203,
@@ -344129,8 +360319,29 @@ orfipy is a tool written in python/cython to extract ORFs in extremely an fast a
     sc:name "ORFLine" ;
     sc:url "https://github.com/boboppie/ORFLine" .
 
+<https://bio.tools/orfm> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Nucleic acid sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_3174 ;
+    sc:citation <https://doi.org/10.1093/bioinformatics/btw241>,
+        "pmcid:PMC5013905",
+        "pubmed:27153669" ;
+    sc:description "A simple and not slow open reading frame (ORF) caller. No bells or whistles like frameshift detection, just a straightforward goal of returning a FASTA file of open reading frames over a certain length from a FASTA/Q file of nucleotide sequences." ;
+    sc:featureList edam:operation_0436 ;
+    sc:isAccessibleForFree true ;
+    sc:license "LGPL-3.0" ;
+    sc:name "orfm" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/wwood/OrfM" .
+
 <https://bio.tools/orforise> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0203,
@@ -344148,7 +360359,7 @@ orfipy is a tool written in python/cython to extract ORFs in extremely an fast a
     biotools:primaryContact "Nicholas J. Dimonaco" .
 
 <https://bio.tools/orfpredictor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3168,
         edam:topic_3512 ;
@@ -344166,7 +360377,7 @@ orfipy is a tool written in python/cython to extract ORFs in extremely an fast a
     biotools:primaryContact "X. (Jack) Min" .
 
 <https://bio.tools/orfquant> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0203,
@@ -344188,49 +360399,28 @@ ORFquant is an R package that aims at detecting and quantifiying ORF translation
     sc:name "ORFquant" ;
     sc:url "https://github.com/lcalviell/ORFquant" .
 
-<https://bio.tools/org> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0199,
-        edam:topic_0602,
-        edam:topic_0625,
-        edam:topic_2229 ;
-    sc:citation <https://doi.org/10.21037/ATM.2019.08.113>,
-        "pmcid:PMC6803196",
-        "pubmed:31700863" ;
-    sc:description """Genome-wide mutation profiling and related risk signature for prognosis of papillary renal cell carcinoma.
-
-Background:The papillary renal cell carcinoma (pRCC) is a rare subtype of renal cell carcinoma with limited investigation. Our study aimed to explore a robust signature to predict the prognosis of pRCC from the perspective of mutation profiles. Methods:In this study, we downloaded the simple nucleotide variation data of 288 pRCC samples from The Cancer Genome Atlas (TCGA) database. "GenVisR" package was utilized to visualize gene mutation profiles in pRCC. The PPI network was conducted based on the STRING database and the modification was performed via Cytoscape software (Version 3.7.1). Top 50 mutant genes were selected and Cox regression method was conducted to identify the hub prognostic mutant signature in pRCC using "survival" package.
-
-||| HOMEPAGE BROKEN!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'pRCC', 'GenVisR' (bio.tools/genvisr)""" ;
-    sc:featureList edam:operation_2436,
-        edam:operation_3463,
-        edam:operation_3659 ;
-    sc:name "org" ;
-    sc:url "http://org.Hs.eg.db" .
-
 <https://bio.tools/organismdbi> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2909" ;
-            sc:name "Organism name" ;
-            sc:sameAs "http://edamontology.org/data_2909" ],
+            sc:additionalType "http://edamontology.org/data_1025" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Gene identifier" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1056" ;
-            sc:name "Database name" ;
-            sc:sameAs "http://edamontology.org/data_1056" ],
+            sc:additionalType "http://edamontology.org/data_0989" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Protein identifier" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1025" ;
-            sc:name "Gene identifier" ;
-            sc:sameAs "http://edamontology.org/data_1025" ],
+            sc:additionalType "http://edamontology.org/data_2909" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Organism name" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0989" ;
-            sc:name "Protein identifier" ;
-            sc:sameAs "http://edamontology.org/data_0989" ] ;
+            sc:additionalType "http://edamontology.org/data_1056" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Database name" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2080" ;
-            sc:name "Database search results" ;
-            sc:sameAs "http://edamontology.org/data_2080" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2080" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "Database search results" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3473,
@@ -344253,14 +360443,13 @@ Background:The papillary renal cell carcinoma (pRCC) is a rare subtype of renal
 
 <https://bio.tools/organisms> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1869" ;
-            sc:name "Organism identifier" ;
-            sc:sameAs "http://edamontology.org/data_1869" ] ;
+            sc:additionalType "http://edamontology.org/data_1869" ;
+            sc:name "Organism identifier" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1187" ;
-            sc:name "PubMed ID" ;
-            sc:sameAs "http://edamontology.org/data_1187" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1187" ;
+            sc:encodingFormat "http://edamontology.org/format_2020" ;
+            sc:name "PubMed ID" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0218 ;
     sc:citation <https://doi.org/10.1371/journal.pone.0065390>,
@@ -344278,7 +360467,7 @@ Background:The papillary renal cell carcinoma (pRCC) is a rare subtype of renal
     biotools:primaryContact "Lars Juhl Jensen" .
 
 <https://bio.tools/orgdyn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0625,
@@ -344298,8 +360487,33 @@ Toolset for analyzing time series of 2D organoid contours. Developed by Dr. Zaki
     sc:name "OrgDyn" ;
     sc:url "https://github.com/zakih/organoidDynamics" .
 
+<https://bio.tools/ori-deep> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "DNA sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0621,
+        edam:topic_0749,
+        edam:topic_3127,
+        edam:topic_3318,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1093/BIB/BBAC001>,
+        "pubmed:35048955" ;
+    sc:description "Improving the accuracy for predicting origin of replication sites by using a blend of features and long short-term memory network." ;
+    sc:featureList edam:operation_2454,
+        edam:operation_3927,
+        edam:operation_3935 ;
+    sc:isAccessibleForFree true ;
+    sc:name "ORI-Deep" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://share.streamlit.io/waqarhusain/orideep/main/app.py" .
+
 <https://bio.tools/ori-finder-3> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0654,
@@ -344317,7 +360531,7 @@ Ori-Finder prokaryotic suite identification of replication origins in prokaryoti
     sc:url "http://tubic.tju.edu.cn/Ori-Finder3" .
 
 <https://bio.tools/oric-ens> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0654 ;
     sc:citation <https://doi.org/10.1016/J.COMPBIOLCHEM.2021.107502>,
@@ -344330,7 +360544,7 @@ Ori-Finder prokaryotic suite identification of replication origins in prokaryoti
     biotools:primaryContact <https://orcid.org/0000-0003-0669-072X> .
 
 <https://bio.tools/oridb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0621,
@@ -344352,7 +360566,7 @@ Ori-Finder prokaryotic suite identification of replication origins in prokaryoti
     biotools:primaryContact "Conrad A. Nieduszynski" .
 
 <https://bio.tools/orientagraph> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2885,
         edam:topic_3056,
@@ -344368,8 +360582,30 @@ OrientAGraph enables Maximum Likelihood Network Orientation (MNLO) to be utilize
     sc:name "OrientAGraph" ;
     sc:url "https://github.com/ekmolloy/OrientAGraph" .
 
+<https://bio.tools/origami> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0769,
+        edam:topic_2229,
+        edam:topic_3382,
+        edam:topic_3500 ;
+    sc:citation <https://doi.org/10.1371/JOURNAL.PCBI.1009063>,
+        "pmcid:PMC8584784",
+        "pubmed:34723957" ;
+    sc:description "Single-cell 3D shape dynamics oriented along the apico-basal axis of folding epithelia from fluorescence microscopy data." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3443,
+        edam:operation_3891 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "Origami" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/cistib/origami" .
+
 <https://bio.tools/orio> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3168,
         edam:topic_3169,
@@ -344389,7 +360625,7 @@ OrientAGraph enables Maximum Likelihood Network Orientation (MNLO) to be utilize
     biotools:primaryContact "Contact Form" .
 
 <https://bio.tools/oriogen> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3678 ;
@@ -344405,7 +360641,7 @@ OrientAGraph enables Maximum Likelihood Network Orientation (MNLO) to be utilize
     sc:url "http://www.niehs.nih.gov/research/resources/software/biostatistics/oriogen/index.cfm" .
 
 <https://bio.tools/orion> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -344424,7 +360660,7 @@ OrientAGraph enables Maximum Likelihood Network Orientation (MNLO) to be utilize
     biotools:primaryContact "Jean-Christophe Gelly" .
 
 <https://bio.tools/orione> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0091,
@@ -344444,7 +360680,7 @@ OrientAGraph enables Maximum Likelihood Network Orientation (MNLO) to be utilize
     biotools:primaryContact "Gianmauro Cuccuru" .
 
 <https://bio.tools/oritfinder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0749,
@@ -344463,7 +360699,7 @@ OrientAGraph enables Maximum Likelihood Network Orientation (MNLO) to be utilize
     biotools:primaryContact <https://orcid.org/0000-0001-9439-1660> .
 
 <https://bio.tools/orma> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0632 ;
@@ -344480,7 +360716,7 @@ OrientAGraph enables Maximum Likelihood Network Orientation (MNLO) to be utilize
     biotools:primaryContact "Marco Severgnini" .
 
 <https://bio.tools/orman> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_3170,
@@ -344495,7 +360731,7 @@ OrientAGraph enables Maximum Likelihood Network Orientation (MNLO) to be utilize
     biotools:primaryContact "S. Cenk Sahinalp" .
 
 <https://bio.tools/orna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3168,
@@ -344510,28 +360746,52 @@ OrientAGraph enables Maximum Likelihood Network Orientation (MNLO) to be utilize
     sc:url "https://github.com/SchulzLab/ORNA" ;
     biotools:primaryContact "Marcel H Schulz" .
 
+<https://bio.tools/orper> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Workflow" ;
+    sc:applicationSubCategory edam:topic_0084,
+        edam:topic_0194,
+        edam:topic_0659,
+        edam:topic_0769,
+        edam:topic_3316 ;
+    sc:citation <https://doi.org/10.3390/GENES12111741>,
+        "pmcid:PMC8623055",
+        "pubmed:34828348" ;
+    sc:description "A Workflow for Constrained SSU rRNA Phylogenies." ;
+    sc:featureList edam:operation_0323,
+        edam:operation_0552,
+        edam:operation_3695 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "ORPER" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/Lcornet/ORPER" .
+
 <https://bio.tools/orphadata> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1026" ;
-            sc:name "Gene symbol" ;
-            sc:sameAs "http://edamontology.org/data_1026" ],
+            sc:additionalType "http://edamontology.org/data_1026" ;
+            sc:encodingFormat "http://edamontology.org/format_1964" ;
+            sc:name "Gene symbol" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2099" ;
-            sc:name "Name" ;
-            sc:sameAs "http://edamontology.org/data_2099" ],
+            sc:additionalType "http://edamontology.org/data_2299" ;
+            sc:encodingFormat "http://edamontology.org/format_1964" ;
+            sc:name "Gene name" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2299" ;
-            sc:name "Gene name" ;
-            sc:sameAs "http://edamontology.org/data_2299" ] ;
+            sc:additionalType "http://edamontology.org/data_2099" ;
+            sc:encodingFormat "http://edamontology.org/format_1964" ;
+            sc:name "Name" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2800" ;
-            sc:name "Orpha number" ;
-            sc:sameAs "http://edamontology.org/data_2800" ],
+            sc:additionalType "http://edamontology.org/data_2800" ;
+            sc:encodingFormat "http://edamontology.org/format_3255" ;
+            sc:name "Orpha number" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2800" ;
-            sc:name "Orpha number" ;
-            sc:sameAs "http://edamontology.org/data_2800" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2800" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Orpha number" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "SPARQL endpoint",
         "Web API" ;
@@ -344559,14 +360819,13 @@ OrientAGraph enables Maximum Likelihood Network Orientation (MNLO) to be utilize
 
 <https://bio.tools/orphanet> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2800" ;
-            sc:name "Orpha number" ;
-            sc:sameAs "http://edamontology.org/data_2800" ] ;
+            sc:additionalType "http://edamontology.org/data_2800" ;
+            sc:name "Orpha number" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1622" ;
-            sc:name "Disease report" ;
-            sc:sameAs "http://edamontology.org/data_1622" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1622" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Disease report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
@@ -344585,7 +360844,7 @@ OrientAGraph enables Maximum Likelihood Network Orientation (MNLO) to be utilize
     sc:url "http://www.orpha.net/consor/cgi-bin/index.php" .
 
 <https://bio.tools/orphanet_rare> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0625,
@@ -344605,7 +360864,7 @@ Orphanet is a unique resource, gathering and improving knowledge on rare disease
     sc:url "http://www.orpha.net/" .
 
 <https://bio.tools/orphelia> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0654,
@@ -344624,7 +360883,7 @@ Orphanet is a unique resource, gathering and improving knowledge on rare disease
     biotools:primaryContact "Orphelia Support" .
 
 <https://bio.tools/orso> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0622,
@@ -344644,8 +360903,29 @@ ORSO (Online Resource for Social Omics) is a web application designed to help us
     sc:name "ORSO" ;
     sc:url "https://orso.niehs.nih.gov" .
 
+<https://bio.tools/orsum> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0634,
+        edam:topic_3407 ;
+    sc:citation <https://doi.org/10.1186/S12859-022-04828-2>,
+        "pmcid:PMC9308244",
+        "pubmed:35870894" ;
+    sc:description "A Python package for filtering and comparing enrichment analyses using a simple principle." ;
+    sc:featureList edam:operation_2436,
+        edam:operation_3432,
+        edam:operation_3695 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "orsum" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://anaconda.org/bioconda/orsum" .
+
 <https://bio.tools/ort> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0769,
@@ -344663,7 +360943,7 @@ ORSO (Online Resource for Social Omics) is a web application designed to help us
     biotools:primaryContact <https://orcid.org/0000-0001-8142-6713> .
 
 <https://bio.tools/orthoalign> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0659,
@@ -344681,7 +360961,7 @@ ORSO (Online Resource for Social Omics) is a web application designed to help us
     biotools:primaryContact "Nadia El-Mabrouk" .
 
 <https://bio.tools/orthodb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0621,
@@ -344703,14 +360983,12 @@ ORSO (Online Resource for Social Omics) is a web application designed to help us
 
 <https://bio.tools/orthodisease> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1150" ;
-            sc:name "Disease ID" ;
-            sc:sameAs "http://edamontology.org/data_1150" ] ;
+            sc:additionalType "http://edamontology.org/data_1150" ;
+            sc:name "Disease ID" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1622" ;
-            sc:name "Disease report" ;
-            sc:sameAs "http://edamontology.org/data_1622" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1622" ;
+            sc:name "Disease report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0634 ;
     sc:citation <https://doi.org/10.1093/bib/bbr024> ;
@@ -344725,7 +361003,7 @@ ORSO (Online Resource for Social Omics) is a web application designed to help us
     sc:url "http://orthodisease.sbc.su.se/" .
 
 <https://bio.tools/orthofisher> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0160,
@@ -344750,7 +361028,7 @@ ORSO (Online Resource for Social Omics) is a web application designed to help us
     sc:url "https://github.com/JLSteenwyk/orthofisher" .
 
 <https://bio.tools/orthograph> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0102,
@@ -344770,7 +361048,7 @@ ORSO (Online Resource for Social Omics) is a web application designed to help us
         "Oliver Niehuis" .
 
 <https://bio.tools/orthoinspector> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3053,
         edam:topic_3299 ;
@@ -344786,7 +361064,7 @@ ORSO (Online Resource for Social Omics) is a web application designed to help us
     biotools:primaryContact "Odile Lecompte" .
 
 <https://bio.tools/ortholugedb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3293 ;
@@ -344804,7 +361082,7 @@ ORSO (Online Resource for Social Omics) is a web application designed to help us
     biotools:primaryContact "Brinkman lab at Simon Fraser University" .
 
 <https://bio.tools/orthoselect> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0084,
@@ -344817,8 +361095,32 @@ ORSO (Online Resource for Social Omics) is a web application designed to help us
     sc:name "OrthoSelect" ;
     sc:url "http://orthoselect.gobics.de" .
 
+<https://bio.tools/orthoskim> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0194,
+        edam:topic_0196,
+        edam:topic_0780,
+        edam:topic_3293,
+        edam:topic_3308 ;
+    sc:citation <https://doi.org/10.1111/1755-0998.13584>,
+        "pubmed:35015377" ;
+    sc:description "In silico sequence capture from genomic and transcriptomic libraries for phylogenomic and barcoding applications." ;
+    sc:featureList edam:operation_0323,
+        edam:operation_0523,
+        edam:operation_3192,
+        edam:operation_3216,
+        edam:operation_3258 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "ORTHOSKIM" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/cpouchon/ORTHOSKIM" .
+
 <https://bio.tools/orthovenn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0194,
         edam:topic_0797,
@@ -344838,7 +361140,7 @@ ORSO (Online Resource for Social Omics) is a web application designed to help us
     biotools:primaryContact "Support" .
 
 <https://bio.tools/orthrus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0769,
@@ -344860,7 +361162,7 @@ ORSO (Online Resource for Social Omics) is a web application designed to help us
     sc:url "https://github.com/csbio/Orthrus" .
 
 <https://bio.tools/orthsearchservice> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -344879,7 +361181,7 @@ ORSO (Online Resource for Social Omics) is a web application designed to help us
     sc:url "http://dove.embl-heidelberg.de/Blast2e/" .
 
 <https://bio.tools/ortsuite> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_0780,
@@ -344900,8 +361202,29 @@ ORSO (Online Resource for Social Omics) is a web application designed to help us
     sc:softwareHelp <https://www.youtube.com/playlist?list=PLH4_1OSQOdnqTQY-olYX3vZss4DWtPkZj> ;
     sc:url "https://github.com/mdsufz/OrtSuite" .
 
+<https://bio.tools/oryx-mrsi> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0593,
+        edam:topic_3172,
+        edam:topic_3384,
+        edam:topic_3444 ;
+    sc:citation <https://doi.org/10.1101/2021.11.12.468398> ;
+    sc:description "A Fully-Automated Open-Source Software for Three-Dimensional Proton Magnetic Resonance Spectroscopic Imaging Data Analysis." ;
+    sc:featureList edam:operation_1812,
+        edam:operation_2429,
+        edam:operation_3214 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "Oryx-MRSI" ;
+    sc:operatingSystem "Linux",
+        "Mac" ;
+    sc:softwareHelp <https://sevimcengiz.github.io/oryx/> ;
+    sc:url "https://github.com/sevimcengiz/Oryx-MRSI" .
+
 <https://bio.tools/oryzabase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0625,
@@ -344920,7 +361243,7 @@ ORSO (Online Resource for Social Omics) is a web application designed to help us
     sc:url "https://shigen.nig.ac.jp/rice/oryzabase/" .
 
 <https://bio.tools/osanalyzer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0208,
         edam:topic_2640,
@@ -344942,7 +361265,7 @@ ORSO (Online Resource for Social Omics) is a web application designed to help us
     biotools:primaryContact "Giuseppe Agapito" .
 
 <https://bio.tools/osat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3361,
@@ -344961,7 +361284,7 @@ ORSO (Online Resource for Social Omics) is a web application designed to help us
     biotools:primaryContact "Li Yan" .
 
 <https://bio.tools/osbrca> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3360,
@@ -344980,7 +361303,7 @@ Potential prognostic mRNA biomarkers are exploited to assist in the clinical man
     sc:url "http://bioinfo.henu.edu.cn/BRCA/BRCAList.jsp" .
 
 <https://bio.tools/oscar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0634,
@@ -344995,7 +361318,7 @@ Potential prognostic mRNA biomarkers are exploited to assist in the clinical man
     sc:url "http://biocomp.bioen.uiuc.edu/oscar/" .
 
 <https://bio.tools/osconet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2229,
@@ -345018,7 +361341,7 @@ This software reproduces the approach presented in 'OscoNet: inferring oscillato
     sc:url "https://github.com/alexisboukouvalas/OscoNet" .
 
 <https://bio.tools/oscope> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -345040,102 +361363,85 @@ This software reproduces the approach presented in 'OscoNet: inferring oscillato
 
 <https://bio.tools/osdb_api> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0842" ;
-            sc:name "Identifier" ;
-            sc:sameAs "http://edamontology.org/data_0842" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0842" ;
+            sc:name "Identifier" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0842" ;
-            sc:name "Identifier" ;
-            sc:sameAs "http://edamontology.org/data_0842" ],
+            sc:additionalType "http://edamontology.org/data_0842" ;
+            sc:name "Identifier" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0842" ;
-            sc:name "Identifier" ;
-            sc:sameAs "http://edamontology.org/data_0842" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0842" ;
+            sc:name "Identifier" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0842" ;
-            sc:name "Identifier" ;
-            sc:sameAs "http://edamontology.org/data_0842" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0842" ;
-            sc:name "Identifier" ;
-            sc:sameAs "http://edamontology.org/data_0842" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0842" ;
+            sc:name "Identifier" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0842" ;
+            sc:name "Identifier" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API" ;
     sc:applicationSubCategory edam:topic_3314 ;
     sc:citation <https://doi.org/10.1186/s13321-016-0170-2> ;
@@ -345150,7 +361456,7 @@ This software reproduces the approach presented in 'OscoNet: inferring oscillato
     biotools:primaryContact "Stuart J. Chalk" .
 
 <https://bio.tools/oseac> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2640,
@@ -345166,8 +361472,33 @@ This software reproduces the approach presented in 'OscoNet: inferring oscillato
     sc:name "OSeac" ;
     sc:url "http://bioinfo.henu.edu.cn/EAC/EACList.jsp" .
 
+<https://bio.tools/osgc> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1026" ;
+            sc:name "Gene symbol" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0108,
+        edam:topic_0203,
+        edam:topic_2640,
+        edam:topic_3170,
+        edam:topic_3360 ;
+    sc:citation <https://doi.org/10.3389/FONC.2022.856988>,
+        "pmcid:PMC8965707",
+        "pubmed:35371973" ;
+    sc:description "A Web Portal to Assess the Performance of Prognostic Biomarkers in Gastric Cancer." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_2422,
+        edam:operation_3503 ;
+    sc:isAccessibleForFree true ;
+    sc:name "OSgc" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://bioinfo.henu.edu.cn/GC/GCList.jsp" .
+
 <https://bio.tools/osirix> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3382,
         edam:topic_3444 ;
@@ -345183,7 +361514,7 @@ This software reproduces the approach presented in 'OscoNet: inferring oscillato
     sc:url "http://www.osirix-viewer.com/" .
 
 <https://bio.tools/oslgg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3170,
@@ -345201,7 +361532,7 @@ Glioma is the most frequent primary brain tumor that causes high mortality and m
     sc:url "http://bioinfo.henu.edu.cn/LGG/LGGList.jsp" .
 
 <https://bio.tools/oslihc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3170,
@@ -345218,7 +361549,7 @@ Liver hepatocellular carcinoma (LIHC) is one of the most common malignant tumors
     sc:url "http://bioinfo.henu.edu.cn/LIHC/LIHCList.jsp" .
 
 <https://bio.tools/oslnet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3382,
         edam:topic_3473,
@@ -345233,7 +361564,7 @@ Code release for OSLNet: Deep Small-Sample Classification with an Orthogonal Sof
     sc:url "https://github.com/dongliangchang/OSLNet" .
 
 <https://bio.tools/osluca> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2640,
@@ -345254,7 +361585,7 @@ OSluca ( Online consensus Survival for Lung Cancer) encompasses 35 expression da
     sc:url "http://bioinfo.henu.edu.cn/LUCA/LUCAList.jsp" .
 
 <https://bio.tools/osml> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3474,
         edam:topic_3534 ;
@@ -345269,8 +361600,27 @@ OSluca ( Online consensus Survival for Lung Cancer) encompasses 35 expression da
     sc:url "http://www.csbio.sjtu.edu.cn:8080/OSML/" ;
     biotools:primaryContact "Dong-Jun" .
 
+<https://bio.tools/osov> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1026" ;
+            sc:name "Gene symbol" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_2640,
+        edam:topic_3360 ;
+    sc:citation <https://doi.org/10.3390/BIOLOGY11010023>,
+        "pmcid:PMC8773055",
+        "pubmed:35053021" ;
+    sc:description "An Interactive Web Server to Evaluate Prognostic Biomarkers for Ovarian Cancer." ;
+    sc:featureList edam:operation_0224,
+        edam:operation_0314,
+        edam:operation_3503 ;
+    sc:name "OSov" ;
+    sc:url "https://bioinfo.henu.edu.cn/OV/OVList.jsp" .
+
 <https://bio.tools/ospaad> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2640,
@@ -345286,7 +361636,7 @@ OSluca ( Online consensus Survival for Lung Cancer) encompasses 35 expression da
     sc:url "http://bioinfo.henu.edu.cn/PAAD/PAADList.jsp" .
 
 <https://bio.tools/ospam-c> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3305,
         edam:topic_3421,
@@ -345299,8 +361649,29 @@ OSluca ( Online consensus Survival for Lung Cancer) encompasses 35 expression da
     sc:name "OSPAM-C" ;
     sc:url "https://ashis-das.shinyapps.io/ospam/" .
 
+<https://bio.tools/ospred_tool> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_2640,
+        edam:topic_3373,
+        edam:topic_3379 ;
+    sc:citation <https://doi.org/10.1200/CCI.21.00173>,
+        "pmcid:PMC9067362",
+        "pubmed:35467964" ;
+    sc:description "A Digital Health Aid for Rapid Predictive Analysis of Correlations Between Early End Points and Overall Survival in Non-Small-Cell Lung Cancer Clinical Trials." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3435,
+        edam:operation_3454 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Apache-2.0" ;
+    sc:name "OSPred tool" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/AstraZeneca/OSPred" .
+
 <https://bio.tools/osprey> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0199,
@@ -345314,7 +361685,7 @@ OSluca ( Online consensus Survival for Lung Cancer) encompasses 35 expression da
     sc:url "http://www.cs.duke.edu/donaldlab/osprey.php" .
 
 <https://bio.tools/osprey-m> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0593,
@@ -345336,7 +361707,7 @@ Download the latest Osprey code from its GitHub repository, then extract and add
     sc:url "https://github.com/schorschinho/osprey" .
 
 <https://bio.tools/osprey_vis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0602,
@@ -345359,7 +361730,7 @@ Download the latest Osprey code from its GitHub repository, then extract and add
     biotools:primaryContact "Biogrid Admin" .
 
 <https://bio.tools/osse> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_3277,
@@ -345379,7 +361750,7 @@ Download the latest Osprey code from its GitHub repository, then extract and add
         "Zhuo Shaowei (IT enquiries)" .
 
 <https://bio.tools/osskcm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3063,
@@ -345397,7 +361768,7 @@ Download the latest Osprey code from its GitHub repository, then extract and add
     sc:url "http://bioinfo.henu.edu.cn/Melanoma/MelanomaList.jsp" .
 
 <https://bio.tools/oswitch> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0769 ;
@@ -345415,7 +361786,7 @@ Download the latest Osprey code from its GitHub repository, then extract and add
         "Yannick Wurm" .
 
 <https://bio.tools/ot-scomics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0121,
         edam:topic_2229,
@@ -345431,7 +361802,7 @@ Download the latest Osprey code from its GitHub repository, then extract and add
         "Geert-Jan Huizing" .
 
 <https://bio.tools/otp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -345453,7 +361824,7 @@ Download the latest Osprey code from its GitHub repository, then extract and add
     sc:url "https://otp.dkfz.de/" .
 
 <https://bio.tools/otsun> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_2229,
@@ -345475,7 +361846,7 @@ OTSun is a python package that uses the Monte Carlo Forward Ray Tracing for the
     sc:url "http://otsun.uib.es" .
 
 <https://bio.tools/otubase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0637,
@@ -345494,7 +361865,7 @@ OTSun is a python package that uses the Monte Carlo Forward Ray Tracing for the
     biotools:primaryContact "Daniel Beck" .
 
 <https://bio.tools/otureporter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0632,
         edam:topic_0659,
@@ -345511,17 +361882,17 @@ OTSun is a python package that uses the Monte Carlo Forward Ray Tracing for the
 
 <https://bio.tools/otusfocus> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3917" ;
-            sc:name "Count matrix" ;
-            sc:sameAs "http://edamontology.org/data_3917" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3917" ;
+            sc:encodingFormat "http://edamontology.org/format_3751" ;
+            sc:name "Count matrix" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "A set of tools to work with OTU tables (and feature tables) generated by amplicon sequencing experiments" ;
     sc:featureList edam:operation_0336 ;
     sc:name "otusfocus" ;
     sc:url "https://github.com/quadram-institute-bioscience/otusfocus" .
 
 <https://bio.tools/oufti> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3385 ;
@@ -345540,14 +361911,14 @@ OTSun is a python package that uses the Monte Carlo Forward Ray Tracing for the
 
 <https://bio.tools/out2summary> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ] ;
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_3758" ;
+            sc:name "Peptide identification" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Peptide identification" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -345560,7 +361931,7 @@ OTSun is a python package that uses the Monte Carlo Forward Ray Tracing for the
     sc:url "http://tools.proteomecenter.org/out2summary.php" .
 
 <https://bio.tools/outbreak> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3305,
@@ -345578,7 +361949,7 @@ OTSun is a python package that uses the Monte Carlo Forward Ray Tracing for the
     sc:url "https://outbreak.sysbio.tools/" .
 
 <https://bio.tools/outbreak_responder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3324 ;
     sc:citation <https://doi.org/10.1371/journal.pntd.0005290> ;
@@ -345591,7 +361962,7 @@ OTSun is a python package that uses the Monte Carlo Forward Ray Tracing for the
     biotools:primaryContact "Eric Jorge Nelson" .
 
 <https://bio.tools/outlierd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0077,
@@ -345610,7 +361981,7 @@ OTSun is a python package that uses the Monte Carlo Forward Ray Tracing for the
     biotools:primaryContact "Sukwoo Kim" .
 
 <https://bio.tools/outlyzer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3382 ;
@@ -345628,7 +361999,7 @@ OTSun is a python package that uses the Monte Carlo Forward Ray Tracing for the
     biotools:primaryContact "Laurent Castéra" .
 
 <https://bio.tools/outrider> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3170,
@@ -345649,7 +362020,7 @@ We will use BiocManager to install the package and its dependencies. If you want
     sc:url "https://i12g-gagneurweb.in.tum.de/public/paper/OUTRIDER" .
 
 <https://bio.tools/ova> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0634,
@@ -345665,7 +362036,7 @@ We will use BiocManager to install the package and its dependencies. If you want
     sc:url "http://dna2.leeds.ac.uk:8080/OVA/index.jsp" .
 
 <https://bio.tools/overall_ld> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3053,
@@ -345680,7 +362051,7 @@ We will use BiocManager to install the package and its dependencies. If you want
     biotools:primaryContact "Hongyu Zhao" .
 
 <https://bio.tools/overcovid> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Bioinformatics portal" ;
     sc:applicationSubCategory edam:topic_0219,
         edam:topic_3305 ;
@@ -345698,7 +362069,7 @@ Various layers of interactions among the viruses and human hosts.""" ;
     sc:url "http://bis.zju.edu.cn/overcovid/" .
 
 <https://bio.tools/overlap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0077 ;
     sc:author "Sarah Djebali" ;
@@ -345715,15 +362086,51 @@ Various layers of interactions among the viruses and human hosts.""" ;
     biotools:primaryContact "Sarah Djebali" .
 
 <https://bio.tools/overprot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1742" ;
+            sc:name "PDB residue number" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2700" ;
+            sc:name "CATH identifier" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0623,
+        edam:topic_0736,
+        edam:topic_3542 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC384>,
+        "pubmed:35674374" ;
     sc:description """OverProt creates an overview of secondary structure elements in protein families.
 
 For each protein family from the CATH database, a secondary structure consensus is available, showing the characteristic helices and β-sheets of the family. A consensus for an arbitrary subset of a family can be computed using User-defined queries.""" ;
+    sc:featureList edam:operation_0468,
+        edam:operation_0570,
+        edam:operation_2488 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
     sc:name "OverProt" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
     sc:url "https://overprot.ncbr.muni.cz/home" .
 
+<https://bio.tools/ovirustdb> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:citation <https://doi.org/10.1016/j.virol.2020.05.016>,
+        "pubmed:32838931" ;
+    sc:description "OvirusTdb is a resource to explore the therapeutic potential of oncolytic viruses." ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "ovirustdb" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/ovirustdb/index.html> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/ovirustdb/index.html" .
+
 <https://bio.tools/oviz-bio> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -345749,7 +362156,7 @@ Oviz is a component-based data visualization framework written in TypeScript tha
     sc:url "https://bio.oviz.org/" .
 
 <https://bio.tools/ovnip> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3168,
@@ -345766,7 +362173,7 @@ Oviz is a component-based data visualization framework written in TypeScript tha
     biotools:primaryContact "Dominique Tessier" .
 
 <https://bio.tools/ovpdt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_3053,
@@ -345781,7 +362188,7 @@ Oviz is a component-based data visualization framework written in TypeScript tha
     biotools:primaryContact "Ren-Hua Chung" .
 
 <https://bio.tools/owas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0625,
@@ -345805,7 +362212,7 @@ Oviz is a component-based data visualization framework written in TypeScript tha
     sc:url "https://github.com/shuangsong0110/OWAS" .
 
 <https://bio.tools/oxbench> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1186/1471-2105-4-47> ;
@@ -345818,8 +362225,24 @@ Oviz is a component-based data visualization framework written in TypeScript tha
     sc:softwareVersion "1.3" ;
     sc:url "http://www.compbio.dundee.ac.uk/software.html#msa" .
 
+<https://bio.tools/oxdbase> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:citation <https://doi.org/10.1186/1756-0500-2-67>,
+        "pmcid:PMC2683861",
+        "pubmed:19405962" ;
+    sc:description "OxDBase: A Database of Biodegradative Oxygenases" ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "oxdbase" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/oxdbase/index.html> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/oxdbase/index.html" .
+
 <https://bio.tools/oxdna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0176,
@@ -345838,7 +362261,7 @@ Oviz is a component-based data visualization framework written in TypeScript tha
     biotools:primaryContact <https://orcid.org/0000-0003-1565-6769> .
 
 <https://bio.tools/oxypred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_2814 ;
@@ -345850,11 +362273,11 @@ Oviz is a component-based data visualization framework written in TypeScript tha
         "Mac",
         "Windows" ;
     sc:softwareHelp <http://crdd.osdd.net/raghava/oxypred/help.html> ;
-    sc:url "http://www.imtech.res.in/raghava/oxypred/" ;
+    sc:url "http://webs.iiitd.edu.in/raghava/oxypred/" ;
     biotools:primaryContact "Dr Gajendra P.S. Raghava" .
 
 <https://bio.tools/p-binder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_3534 ;
@@ -345869,7 +362292,7 @@ Oviz is a component-based data visualization framework written in TypeScript tha
     sc:url "https://sites.google.com/site/guofeics/p-binder" .
 
 <https://bio.tools/p-finder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0621,
@@ -345889,7 +362312,7 @@ P Finder is a GUI software application for the fast identification of RNase P RN
     sc:url "https://github.com/JChristopherEllis/P-Finder" .
 
 <https://bio.tools/p-match> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0749,
@@ -345910,7 +362333,7 @@ P Finder is a GUI software application for the fast identification of RNase P RN
     biotools:primaryContact "Support" .
 
 <https://bio.tools/p-sams> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0659,
@@ -345926,7 +362349,7 @@ P Finder is a GUI software application for the fast identification of RNase P RN
     sc:url "http://p-sams.carringtonlab.org/" .
 
 <https://bio.tools/p-scan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2269,
@@ -345945,8 +362368,30 @@ P Finder is a GUI software application for the fast identification of RNase P RN
         "P. J. Munson",
         "V. V. Prabhu" .
 
+<https://bio.tools/p-smoother> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0199,
+        edam:topic_0625,
+        edam:topic_3168,
+        edam:topic_3337 ;
+    sc:citation <https://doi.org/10.1093/BIOADV/VBAC045>,
+        "pmcid:PMC9245627",
+        "pubmed:35785021" ;
+    sc:description "P-smoother is an efficient method to correct recent mutations and genotyping errors in biobank-scale haplotype panels. Utilizing P-smoother to \"smooth\" a panel allows for downstream haplotype matching tasks to be error tolerant and more accurate. The input data for P-smoother is phased genotype data (in VCF format)." ;
+    sc:featureList edam:operation_0487,
+        edam:operation_3196,
+        edam:operation_3211 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "P-smoother" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://github.com/ZhiGroup/P-smoother" .
+
 <https://bio.tools/p-sort> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0611,
         edam:topic_3300,
@@ -345964,7 +362409,7 @@ P Finder is a GUI software application for the fast identification of RNase P RN
     biotools:primaryContact <https://orcid.org/0000-0001-6732-1296> .
 
 <https://bio.tools/p-ssn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -345983,7 +362428,7 @@ Construct the single-sample network based on partial correlation(P-SSN).""" ;
     sc:url "https://github.com/hyhRise/P-SSN" .
 
 <https://bio.tools/p-trap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3053 ;
@@ -345997,22 +362442,8 @@ Construct the single-sample network based on partial correlation(P-SSN).""" ;
     sc:softwareHelp <http://bioinfo.mpl.ird.fr/images/ptrap/P-TRAP_manual.pdf> ;
     sc:url "http://bioinfo.mpl.ird.fr/index.php?option=com_content&view=article&id=102&Itemid=2" .
 
-<https://bio.tools/p13CMFA> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0602,
-        edam:topic_3172,
-        edam:topic_3407 ;
-    sc:citation <https://doi.org/10.1371/JOURNAL.PCBI.1007310>,
-        "pmcid:PMC6750616",
-        "pubmed:31490922" ;
-    sc:description "> HOMEPAGE MISSING! | > CORRECT NAME OF TOOL COULD ALSO BE 'Iso2Flux' (bio.tools/iso2flux) | Parsimonious 13C metabolic flux analysis | Deciphering the mechanisms of regulation of metabolic networks subjected to perturbations, including disease states and drug-induced stress, relies on tracing metabolic fluxes. One of the most informative data to predict metabolic fluxes are 13C based metabolomics, which provide information about how carbons are redistributed along central carbon metabolism. Such data can be integrated using 13C Metabolic Flux Analysis (13C MFA) to provide quantitative metabolic maps of flux distributions. However, 13C MFA might be unable to reduce the solution space towards a unique solution either in large metabolic networks or when small sets of measurements are integrated. Here we present parsimonious 13C MFA (p13CMFA), an approach that runs a secondary optimization in the 13C MFA solution space to identify the solution that minimizes the total reaction flux" ;
-    sc:featureList edam:operation_2495,
-        edam:operation_3660,
-        edam:operation_3715 ;
-    sc:name "p13CMFA" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31490922" .
-
 <https://bio.tools/p2cs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0602,
@@ -346033,7 +362464,7 @@ Construct the single-sample network based on partial correlation(P-SSN).""" ;
     sc:url "http://www.p2cs.org" .
 
 <https://bio.tools/p2rank> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_1317,
@@ -346052,7 +362483,7 @@ Construct the single-sample network based on partial correlation(P-SSN).""" ;
     biotools:primaryContact "David Hoksza" .
 
 <https://bio.tools/p2rp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0123,
         edam:topic_0621,
@@ -346071,7 +362502,7 @@ Construct the single-sample network based on partial correlation(P-SSN).""" ;
     biotools:primaryContact "P2RP Support" .
 
 <https://bio.tools/p2s> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_2885 ;
@@ -346084,7 +362515,7 @@ Construct the single-sample network based on partial correlation(P-SSN).""" ;
     sc:url "http://www.jurgott.org/linkage/p2s.html" .
 
 <https://bio.tools/p4p> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0121,
@@ -346102,14 +362533,12 @@ Construct the single-sample network based on partial correlation(P-SSN).""" ;
 
 <https://bio.tools/p53> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:name "Protein features" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:name "Protein features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_3510 ;
@@ -346126,7 +362555,7 @@ Construct the single-sample network based on partial correlation(P-SSN).""" ;
     sc:url "http://persson-group.scilifelab.se/p53/" .
 
 <https://bio.tools/p53mutagene> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_2229,
@@ -346142,7 +362571,7 @@ Construct the single-sample network based on partial correlation(P-SSN).""" ;
     sc:url "http://www.chemoprofiling.org/cgi-bin/GEO/tp53/web_run_tp53.V1.pl" .
 
 <https://bio.tools/p6ma> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0160,
@@ -346162,7 +362591,7 @@ p6mA is a N^6-methyladenine predictor which is trained by multiple species' data
     sc:url "https://github.com/Konglab404/p6mA" .
 
 <https://bio.tools/pATsi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0622 ;
@@ -346177,21 +362606,8 @@ p6mA is a N^6-methyladenine predictor which is trained by multiple species' data
     sc:softwareVersion "1" ;
     sc:url "http://cab.unina.it/athparalog/main2.html" .
 
-<https://bio.tools/pCRM1exportome> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0121,
-        edam:topic_0199,
-        edam:topic_0736 ;
-    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTZ657>,
-        "pubmed:31504173" ;
-    sc:description "database of predicted CRM1-dependent Nuclear Export Signal (NES) motifs in cancer-related genes | Database of predicted CRM1-dependent NES motifs | pCRM1exportome is a comprehensive database containing possible NES motifs of the cancer-related sequences in human reference proteome. You can easily check the NES consensus-matching sequence segments in relation to protein domains, secondary structures, binding energies at the CRM1's NES-binding groove, and also the cancer-related mutation positions" ;
-    sc:featureList edam:operation_0239,
-        edam:operation_0267,
-        edam:operation_0303 ;
-    sc:name "pCRM1exportome" ;
-    sc:url "http://prodata.swmed.edu/pCRM1exportome" .
-
 <https://bio.tools/pClean> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -346206,7 +362622,7 @@ p6mA is a N^6-methyladenine predictor which is trained by multiple species' data
     sc:url "https://github.com/AimeeD90/pClean_release" .
 
 <https://bio.tools/pLink-2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
         edam:topic_3520 ;
@@ -346219,21 +362635,8 @@ p6mA is a N^6-methyladenine predictor which is trained by multiple species' data
     sc:name "pLink" ;
     sc:url "http://pfind.ict.ac.cn/software/pLink/index.html" .
 
-<https://bio.tools/pLink_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0121,
-        edam:topic_0154,
-        edam:topic_3520 ;
-    sc:citation <https://doi.org/10.1038/S41467-019-11337-Z>,
-        "pmcid:PMC6667459",
-        "pubmed:31363125" ;
-    sc:description "> LOW CONFIDENCE! | > NAME (pLink) SIMILAR TO (PUB. DIFFERENT) bio.tools/plink (PLINK) | A high-speed search engine pLink 2 with systematic evaluation for proteome-scale identification of cross-linked peptides | pFind Studio: a computational solution for mass spectrometry-based proteomics | pLink® 2 is developed as an upgrade of pLink 1. Compared with pLink 1, pLink 2 provides a graphical user interface, and is ~40 times faster with a newly designed index structure. There are also some improvements in the precision | Introduction - Cite us - Downloads - Version history" ;
-    sc:featureList edam:operation_2929,
-        edam:operation_3649 ;
-    sc:name "pLink_autogenerated" ;
-    sc:url "http://pfind.ict.ac.cn/software/pLink/index.html" .
-
 <https://bio.tools/pLoc_bal-mEuk> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3068,
         edam:topic_3399,
@@ -346253,27 +362656,8 @@ p6mA is a N^6-methyladenine predictor which is trained by multiple species' data
     sc:url "http://www.jci-bioinfo.cn/pLoc_bal-mEuk/" ;
     biotools:primaryContact "Xuan Xiao" .
 
-<https://bio.tools/pMLST> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0196,
-        edam:topic_0622,
-        edam:topic_3673 ;
-    sc:citation <https://doi.org/10.1007/978-1-4939-9877-7_20>,
-        "pubmed:31584170" ;
-    sc:description """Identification and Typing of Plasmid Replicons in Whole-Genome Sequencing (WGS).
-
-PlasmidFinder and in silico plasmid multiLocus sequence typing (pMLST) are two easy-to-use web tools for detection and characterization of plasmid sequences in whole-genome sequencing (WGS) data from Enterobacteriaceae. These tools have been adopted worldwide and facilitate plasmid detection and typing based on draft genomes of multi-drug-resistant Enterobacteriaceae. The PlasmidFinder database currently includes 133 unique plasmid replicon sequences. It was built starting with 126 sequences devised on fully sequenced plasmids available at the NCBI nucleotide database in 2014 and has been continuously updated to include novel replicons detected in more recently sequenced plasmids associated with the family Enterobacteriaceae.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'silico pMLST', 'pubmlst'""" ;
-    sc:featureList edam:operation_0310,
-        edam:operation_3431,
-        edam:operation_3840 ;
-    sc:name "pMLST" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31584170" .
-
 <https://bio.tools/pNovo_3> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
         edam:topic_3673 ;
@@ -346288,7 +362672,7 @@ PlasmidFinder and in silico plasmid multiLocus sequence typing (pMLST) are two e
     sc:url "http://pfind.ict.ac.cn/software/pNovo/index.html" .
 
 <https://bio.tools/pQCT> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3416,
         edam:topic_3452 ;
     sc:citation <https://doi.org/10.1016/J.JOCD.2019.11.001>,
@@ -346301,7 +362685,7 @@ PlasmidFinder and in silico plasmid multiLocus sequence typing (pMLST) are two e
     sc:url "https://github.com/tjrantal/pQCT" .
 
 <https://bio.tools/pSBVB> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2885,
@@ -346323,7 +362707,7 @@ PlasmidFinder and in silico plasmid multiLocus sequence typing (pMLST) are two e
         "M Pérez-Enciso" .
 
 <https://bio.tools/pSTDistanceR> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0194,
@@ -346344,7 +362728,7 @@ PlasmidFinder and in silico plasmid multiLocus sequence typing (pMLST) are two e
     biotools:primaryContact "Todd A. Castoe" .
 
 <https://bio.tools/pSpatiocyte> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3306,
         edam:topic_3314,
@@ -346370,18 +362754,8 @@ Parallel version of Spatiocyte (pSpatiocyte): Github""" ;
     sc:name "pSpatiocyte" ;
     sc:url "https://spatiocyte.org" .
 
-<https://bio.tools/pTMAEMA_pSBVI_hydrogels> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0593,
-        edam:topic_0602,
-        edam:topic_3368 ;
-    sc:citation <https://doi.org/10.1021/ACS.BIOMAC.9B00796>,
-        "pubmed:31381318" ;
-    sc:description "> VERY_LOW CONFIDENCE! | > HOMEPAGE MISSING! | > CORRECT NAME OF TOOL COULD ALSO BE 'pTMAEMA pSBVI', 'pTMAEMA pSBVI hydrogel', 'reusability pTMAEMA pSBVI hydrogels', 'pSBVI hydrogels' | Polyelectrolyte and Antipolyelectrolyte Effects for Dual Salt-Responsive Interpenetrating Network Hydrogels | This work presents a salt-responsive interpenetrating network (IPN) hydrogel with effective antimicrobial properties and surface regeneration. The hydrogels were engineered using the double network strategy to form loosely cross-linked zwitterionic poly(sulfobetaine vinylimidazole) (pSBVI) networks into the highly cross-linked cationic poly((trimethylamino)ethyl methacrylate chloride) (pTMAEMA) framework via photopolymerization. The pTMAEMA pSBVI hydrogel has strong mechanical properties, with a fracture stress 120× higher than single network pTMAEMA hydrogel" ;
-    sc:name "pTMAEMA pSBVI hydrogels" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31381318" .
-
 <https://bio.tools/pTrimmer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0632,
@@ -346404,7 +362778,7 @@ Parallel version of Spatiocyte (pSpatiocyte): Github""" ;
         "Zhiguang Li" .
 
 <https://bio.tools/pTuneos> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_2830,
         edam:topic_3170,
@@ -346426,7 +362800,7 @@ pTuneos is the state-of-the-art computational pipeline for identifying personali
     sc:url "https://github.com/bm2-lab/pTuneos" .
 
 <https://bio.tools/pWGBSSimla> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3295,
         edam:topic_3674 ;
@@ -346440,7 +362814,7 @@ pTuneos is the state-of-the-art computational pipeline for identifying personali
     sc:url "https://omicssimla.sourceforge.io/" .
 
 <https://bio.tools/pa-sub> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0621,
@@ -346463,22 +362837,21 @@ pTuneos is the state-of-the-art computational pipeline for identifying personali
 
 <https://bio.tools/paa> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3110" ;
-            sc:name "Raw microarray data" ;
-            sc:sameAs "http://edamontology.org/data_3110" ],
+            sc:additionalType "http://edamontology.org/data_3671" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Text" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3671" ;
-            sc:name "Text" ;
-            sc:sameAs "http://edamontology.org/data_3671" ] ;
+            sc:additionalType "http://edamontology.org/data_3110" ;
+            sc:name "Raw microarray data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ],
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3591" ;
+            sc:name "Plot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2872" ;
-            sc:name "ID list" ;
-            sc:sameAs "http://edamontology.org/data_2872" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2872" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "ID list" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -346505,8 +362878,21 @@ pTuneos is the state-of-the-art computational pipeline for identifying personali
     sc:softwareVersion "1.1" ;
     sc:url "http://bioconductor.org/packages/PAA/" .
 
+<https://bio.tools/paaint> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:description "This server allows you to predict the residue-residue contact in proteins from its amino acid sequence." ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "paaint" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/paaint/index.html> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/paaint/index.html" .
+
 <https://bio.tools/pac> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3299,
@@ -346521,7 +362907,7 @@ pTuneos is the state-of-the-art computational pipeline for identifying personali
     sc:url "https://github.com/GabrielaJurkiewicz/ePAC" .
 
 <https://bio.tools/pacas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0160,
@@ -346537,13 +362923,8 @@ PACAS consists of three files: Pacas.py, Pacas_FB.pl, and Pacas_CP.pl. In the cu
     sc:name "PACAS" ;
     sc:url "https://github.com/BlabOaklandU/PACAS" .
 
-<https://bio.tools/pacbio_smrt_sequencing> a sc:SoftwareApplication ;
-    sc:description "CD Genomics is providing PacBio SMRT sequencing to complement our NGS facility. By taking advantage of the long-read and single molecular sequencing capability developed by PacBio, we are proud to offer advanced genome de novo assembly solutions and full-length gene/transcript sequencing strategy to suit your project needs. Supported by our experienced scientists and advanced platforms, CD genomics can assist you in the studies on genomics, transcriptomics, epigenomics, microbial genomics, and single-cell sequencing. with unmatched read lengths, uniform coverage, and high accuracy. If you have additional requirements or questions, please feel free to contact us." ;
-    sc:name "PacBio SMRT Sequencing" ;
-    sc:url "https://www.cd-genomics.com/PacBio-SMRT-Sequencing.html" .
-
 <https://bio.tools/pacbioeda> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:description "Python scripts for Exploratory Data Analysis of Pacific Biosciences sequence data" ;
@@ -346555,7 +362936,7 @@ PACAS consists of three files: Pacas.py, Pacas_FB.pl, and Pacas_CP.pl. In the cu
     sc:url "https://github.com/TomSkelly/PacBioEDA" .
 
 <https://bio.tools/paccmann> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0209,
@@ -346573,7 +362954,7 @@ PACAS consists of three files: Pacas.py, Pacas_FB.pl, and Pacas_CP.pl. In the cu
     sc:url "https://ibm.biz/paccmann-aas" .
 
 <https://bio.tools/pacific> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0749,
@@ -346592,7 +362973,7 @@ PACIFIC: A lightweight deep-learning classifier of SARS-CoV-2 and co-infecting v
     sc:url "https://github.com/pacific-2020/pacific" .
 
 <https://bio.tools/packmem> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0153,
         edam:topic_0176 ;
@@ -346611,18 +362992,18 @@ PACIFIC: A lightweight deep-learning classifier of SARS-CoV-2 and co-infecting v
 
 <https://bio.tools/pacman> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1234" ;
-            sc:name "Sequence set (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1234" ],
+            sc:additionalType "http://edamontology.org/data_2084" ;
+            sc:encodingFormat "http://edamontology.org/format_2305" ;
+            sc:name "Nucleic acid report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2084" ;
-            sc:name "Nucleic acid report" ;
-            sc:sameAs "http://edamontology.org/data_2084" ] ;
+            sc:additionalType "http://edamontology.org/data_1234" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence set (nucleic acid)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3603" ;
+            sc:name "Image" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.14806/EJ.21.A.807> ;
@@ -346637,7 +363018,7 @@ PACIFIC: A lightweight deep-learning classifier of SARS-CoV-2 and co-infecting v
     sc:url "http://www.unifr.ch/bugfri/pacman" .
 
 <https://bio.tools/pacnnrl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_3303,
@@ -346655,7 +363036,7 @@ PACIFIC: A lightweight deep-learning classifier of SARS-CoV-2 and co-infecting v
     sc:url "http://112.74.48.115:9000/" .
 
 <https://bio.tools/pacomplex> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2830 ;
@@ -346673,8 +363054,29 @@ PACIFIC: A lightweight deep-learning classifier of SARS-CoV-2 and co-infecting v
     biotools:primaryContact "Jinn-Moon Yang",
         "Yu-Shu Lo" .
 
+<https://bio.tools/pacrat> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0081,
+        edam:topic_0102,
+        edam:topic_0199 ;
+    sc:citation <https://doi.org/10.1093/bioinformatics/btac165>,
+        "pubmed:35311953" ;
+    sc:description "A program to improve barcode-variant mapping from PacBio long reads using multiple sequence alignment." ;
+    sc:featureList edam:operation_0292,
+        edam:operation_3198,
+        edam:operation_3200,
+        edam:operation_3227 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "PacRAT" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/dunhamlab/PacRAT" .
+
 <https://bio.tools/pacsy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0593,
@@ -346690,7 +363092,7 @@ PACIFIC: A lightweight deep-learning classifier of SARS-CoV-2 and co-infecting v
     biotools:primaryContact "Woonghee Lee" .
 
 <https://bio.tools/pacvr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
@@ -346712,7 +363114,7 @@ Visualizes the coverage depth of a complete plastid genome as well as the equali
     sc:url "https://cran.r-project.org/package=PACVr" .
 
 <https://bio.tools/padhoc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0218,
         edam:topic_0602,
@@ -346729,21 +363131,30 @@ Visualizes the coverage depth of a complete plastid genome as well as the equali
     sc:name "Padhoc" ;
     sc:url "https://github.com/ConesaLab/padhoc" .
 
-<https://bio.tools/padimi> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0089,
-        edam:topic_0218,
-        edam:topic_3324 ;
-    sc:citation <https://doi.org/10.1186/S13326-019-0208-2>,
-        "pmcid:PMC6751637",
-        "pubmed:31533864" ;
-    sc:description "> LOW CONFIDENCE! | > CORRECT NAME OF TOOL COULD ALSO BE 'patho', 'pathogen-disease', 'pathogen-disease associations', '3420 pathogen-disease' | Ontology based mining of pathogen-disease associations from literature | Ontology based mined Pathogen-Disease associations | expanded.InfDis.Pairs.pathogen-disease+NPMI.txt contains all the pathogen-disease pairs extracted from literature. Our association extraction is based on sentence level co-occurrence of pathogen and disease and applying a filter for NMPI>=0.2 and number of co-occurrences>=10 | The data format of this file is as follows: | NCBI_TaxonomyID##Disease_Ontology_ID #co-occurrences NPMI_value" ;
-    sc:featureList edam:operation_0306,
-        edam:operation_3461 ;
-    sc:name "padimi" ;
-    sc:url "https://github.com/bio-ontology-research-group/padimi" .
+<https://bio.tools/padi-web> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0218,
+        edam:topic_3305,
+        edam:topic_3324,
+        edam:topic_3474,
+        edam:topic_3500 ;
+    sc:citation <https://doi.org/10.1016/J.ONEHLT.2021.100357>,
+        "pmcid:PMC8671119",
+        "pubmed:34950760" ;
+    sc:description "A new framework for extracting and disseminating fine-grained information from the news for animal disease surveillance." ;
+    sc:featureList edam:operation_2422,
+        edam:operation_3096,
+        edam:operation_3280 ;
+    sc:isAccessibleForFree true ;
+    sc:name "PADI-web" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://padi-web.cirad.fr/" .
 
 <https://bio.tools/padloc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:author <https://orcid.org/0000-0002-4512-3093>,
@@ -346762,7 +363173,7 @@ Visualizes the coverage depth of a complete plastid genome as well as the equali
     biotools:primaryContact <https://orcid.org/0000-0002-4512-3093> .
 
 <https://bio.tools/padog> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -346782,7 +363193,7 @@ Visualizes the coverage depth of a complete plastid genome as well as the equali
     biotools:primaryContact "Adi Laurentiu Tarca" .
 
 <https://bio.tools/padre> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3293,
@@ -346800,18 +363211,18 @@ Visualizes the coverage depth of a complete plastid genome as well as the equali
 
 <https://bio.tools/padua> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ],
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Expression data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2531" ;
-            sc:name "Experiment report" ;
-            sc:sameAs "http://edamontology.org/data_2531" ] ;
+            sc:additionalType "http://edamontology.org/data_2531" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Experiment report" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3508" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0121 ;
@@ -346830,7 +363241,7 @@ Visualizes the coverage depth of a complete plastid genome as well as the equali
     biotools:primaryContact "Martin Fitzpatrick" .
 
 <https://bio.tools/pafig> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0634,
@@ -346846,7 +363257,7 @@ Visualizes the coverage depth of a complete plastid genome as well as the equali
     sc:url "http://www.mobioinfor.cn/pafig/index.htm" .
 
 <https://bio.tools/pafway> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0602,
@@ -346864,7 +363275,7 @@ Visualizes the coverage depth of a complete plastid genome as well as the equali
     sc:url "https://github.com/ezer/PAFway" .
 
 <https://bio.tools/pagal> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0123,
         edam:topic_2814 ;
@@ -346879,7 +363290,7 @@ Visualizes the coverage depth of a complete plastid genome as well as the equali
     sc:url "https://github.com/sanchak/pagal" .
 
 <https://bio.tools/pageant> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0622,
@@ -346900,7 +363311,7 @@ Visualizes the coverage depth of a complete plastid genome as well as the equali
         "valerio.napolioni@unicam.it" .
 
 <https://bio.tools/pageman> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0621 ;
@@ -346917,7 +363328,7 @@ Visualizes the coverage depth of a complete plastid genome as well as the equali
     sc:url "http://mapman.gabipd.org/web/guest/pageman" .
 
 <https://bio.tools/pager> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3053,
@@ -346937,7 +363348,7 @@ Visualizes the coverage depth of a complete plastid genome as well as the equali
     biotools:primaryContact "Zongliang Yue" .
 
 <https://bio.tools/pager-cov> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0605,
@@ -346955,8 +363366,29 @@ A Pathways, Annotated-lists and Gene signatures Electronic Repository Related to
     sc:name "PAGER-CoV" ;
     sc:url "http://discovery.informatics.uab.edu/PAGER-CoV/" .
 
+<https://bio.tools/pager_web_app> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0085,
+        edam:topic_0203,
+        edam:topic_0602,
+        edam:topic_3170 ;
+    sc:citation <https://doi.org/10.3389/FGENE.2022.820361>,
+        "pmcid:PMC9039620",
+        "pubmed:35495152" ;
+    sc:description "An Interactive, Online Gene Set and Network Interpretation Tool for Functional Genomics." ;
+    sc:featureList edam:operation_2436,
+        edam:operation_3223,
+        edam:operation_3928 ;
+    sc:isAccessibleForFree true ;
+    sc:name "PAGER Web APP" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://aimed-lab.shinyapps.io/PAGERwebapp/" .
+
 <https://bio.tools/pagit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0196 ;
     sc:citation <https://doi.org/10.1038/nprot.2012.068>,
@@ -346970,8 +363402,34 @@ A Pathways, Annotated-lists and Gene signatures Electronic Repository Related to
     sc:url "http://www.sanger.ac.uk/science/tools/pagit" ;
     biotools:primaryContact "Thomas Otto" .
 
+<https://bio.tools/pagoo> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0084,
+        edam:topic_0194,
+        edam:topic_0196,
+        edam:topic_3382,
+        edam:topic_3945 ;
+    sc:citation <https://doi.org/10.1016/J.CRMETH.2021.100085>,
+        "pmcid:PMC9017228",
+        "pubmed:35474671" ;
+    sc:description "An object-oriented framework for evolutionary pangenome analysis." ;
+    sc:featureList edam:operation_0224,
+        edam:operation_0337,
+        edam:operation_3431,
+        edam:operation_3478,
+        edam:operation_3891 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "Pagoo" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://cran.r-project.org/web/packages/pagoo/pagoo.pdf> ;
+    sc:url "https://cran.r-project.org/package=pagoo" .
+
 <https://bio.tools/pai-wsit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_2640,
@@ -346987,7 +363445,7 @@ A Pathways, Annotated-lists and Gene signatures Electronic Repository Related to
     sc:url "http://www.paiwsit.com" .
 
 <https://bio.tools/paice> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2259 ;
@@ -347004,7 +363462,7 @@ A Pathways, Annotated-lists and Gene signatures Electronic Repository Related to
     sc:url "http://sourceforge.net/projects/paice/" .
 
 <https://bio.tools/pain-ckb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0202,
@@ -347023,7 +363481,7 @@ A generic knowledgebase computation platform integrated with our established che
     sc:url "https://www.cbligand.org/g/pain-ckb" .
 
 <https://bio.tools/painomics_3> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3391 ;
@@ -347040,7 +363498,7 @@ A generic knowledgebase computation platform integrated with our established che
     sc:url "http://www.paintomics.org/" .
 
 <https://bio.tools/paintdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0121,
@@ -347057,8 +363515,31 @@ A generic knowledgebase computation platform integrated with our established che
     sc:name "PaIntDB" ;
     sc:url "https://www.paintdb.ca" .
 
+<https://bio.tools/paintomics> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0602,
+        edam:topic_0659,
+        edam:topic_0780,
+        edam:topic_3172 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAC352>,
+        "pmcid:PMC9252773",
+        "pubmed:35609982" ;
+    sc:description "New tools for the integrative analysis of multi-omics datasets supported by multiple pathway databases." ;
+    sc:featureList edam:operation_0533,
+        edam:operation_3926,
+        edam:operation_3927,
+        edam:operation_3929 ;
+    sc:isAccessibleForFree true ;
+    sc:name "PaintOmics" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://paintomics.org/" .
+
 <https://bio.tools/paintshop> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0632,
@@ -347078,7 +363559,7 @@ PaintSHOP is a technology that enables the interactive design of oligonucleotide
     sc:url "http://paintshop.io" .
 
 <https://bio.tools/pair> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0602,
@@ -347102,7 +363583,7 @@ PaintSHOP is a technology that enables the interactive design of oligonucleotide
         "Xiaoxuan Wang" .
 
 <https://bio.tools/pairadise> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2885,
@@ -347124,7 +363605,7 @@ PaintSHOP is a technology that enables the interactive design of oligonucleotide
     sc:url "https://github.com/Xinglab/PAIRADISE" .
 
 <https://bio.tools/pairagon> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3512 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btp273> ;
@@ -347136,7 +363617,7 @@ PaintSHOP is a technology that enables the interactive design of oligonucleotide
     sc:url "http://mblab.wustl.edu/software.html#pairagonLink" .
 
 <https://bio.tools/paircoil2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/bti797> ;
@@ -347148,7 +363629,7 @@ PaintSHOP is a technology that enables the interactive design of oligonucleotide
     sc:url "http://groups.csail.mit.edu/cb/paircoil2/" .
 
 <https://bio.tools/paircompviz> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -347167,7 +363648,7 @@ PaintSHOP is a technology that enables the interactive design of oligonucleotide
     biotools:primaryContact "Michal Burda" .
 
 <https://bio.tools/pairgp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2269,
@@ -347183,7 +363664,7 @@ PairGP, a non-stationary Gaussian process method to compare gene expression time
     sc:url "https://github.com/michelevantini/PairGP" .
 
 <https://bio.tools/pairheatmap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0203,
@@ -347201,7 +363682,7 @@ PairGP, a non-stationary Gaussian process method to compare gene expression time
     biotools:primaryContact "Xiaoyong Sun" .
 
 <https://bio.tools/pairix> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btab870>,
@@ -347218,7 +363699,7 @@ PairGP, a non-stationary Gaussian process method to compare gene expression time
     sc:url "https://github.com/4dn-dcic/pairix" .
 
 <https://bio.tools/pairpred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0128,
@@ -347233,7 +363714,7 @@ PairGP, a non-stationary Gaussian process method to compare gene expression time
     biotools:primaryContact "Asa Ben-Hur" .
 
 <https://bio.tools/pairs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btab870>,
@@ -347250,7 +363731,7 @@ PairGP, a non-stationary Gaussian process method to compare gene expression time
     sc:url "https://github.com/4dn-dcic/pairsqc" .
 
 <https://bio.tools/pairtree> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0199,
@@ -347266,7 +363747,7 @@ Pairtree infers the phylogeny underlying a cancer using genomic mutation data. P
     sc:url "https://www.github.com/morrislab/pairtree" .
 
 <https://bio.tools/pairwisestatsig> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1186/1471-2105-10-S3-S1> ;
@@ -347278,8 +363759,30 @@ Pairtree infers the phylogeny underlying a cancer using genomic mutation data. P
     sc:softwareVersion "20110801" ;
     sc:url "http://brendelgroup.org/bioinformatics2go/PairwiseStatSig.php" .
 
+<https://bio.tools/paiso-seq> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0108,
+        edam:topic_0659,
+        edam:topic_3170,
+        edam:topic_3308,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.1038/S41596-022-00704-8>,
+        "pubmed:35831615" ;
+    sc:description "Transcriptome-wide measurement of poly(A) tail length and composition at subnanogram total RNA sensitivity by PAIso-seq." ;
+    sc:featureList edam:operation_0428,
+        edam:operation_3192,
+        edam:operation_3200 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "PAIso-seq" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/Lulab-IGDB/PAIso-seq_scripts" .
+
 <https://bio.tools/paivs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0622,
@@ -347299,7 +363802,7 @@ In order to support the pre-processing of NGS data and its interpretation, we de
     sc:url "http://ircgp.com/paivs" .
 
 <https://bio.tools/pal> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0659 ;
@@ -347313,7 +363816,7 @@ In order to support the pre-processing of NGS data and its interpretation, we de
     biotools:primaryContact "Shaojie Zhang" .
 
 <https://bio.tools/pal2nal> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -347334,7 +363837,7 @@ In order to support the pre-processing of NGS data and its interpretation, we de
     biotools:primaryContact "Mikita Suyama" .
 
 <https://bio.tools/paladin> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0097,
@@ -347350,7 +363853,7 @@ In order to support the pre-processing of NGS data and its interpretation, we de
     biotools:primaryContact "Anthony Westbrook" .
 
 <https://bio.tools/palalign> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2259,
@@ -347369,7 +363872,7 @@ In order to support the pre-processing of NGS data and its interpretation, we de
     biotools:primaryContact "Tamer Kahveci" .
 
 <https://bio.tools/palcheck> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0080 ;
@@ -347383,7 +363886,7 @@ In order to support the pre-processing of NGS data and its interpretation, we de
     sc:url "http://toc.yonsei.ac.kr/OMPPM/" .
 
 <https://bio.tools/paleomix> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_2885,
@@ -347402,7 +363905,7 @@ In order to support the pre-processing of NGS data and its interpretation, we de
         "Mikkel Schubert" .
 
 <https://bio.tools/pales> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0078,
@@ -347418,7 +363921,7 @@ In order to support the pre-processing of NGS data and its interpretation, we de
     sc:url "http://www3.mpibpc.mpg.de/groups/zweckstetter/_links/software_pales.htm" .
 
 <https://bio.tools/palikiss> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0099 ;
@@ -347432,14 +363935,12 @@ In order to support the pre-processing of NGS data and its interpretation, we de
 
 <https://bio.tools/palindrome> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:name "Sequence features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0157 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -347470,7 +363971,7 @@ In order to support the pre-processing of NGS data and its interpretation, we de
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/palindrome.html" .
 
 <https://bio.tools/pallas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -347488,7 +363989,7 @@ A Python package for inference of gene regulatory networks from noisy gene expre
     sc:url "https://github.com/yukuntan92/PALLAS" .
 
 <https://bio.tools/palma> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3170 ;
     sc:citation "pubmed:17537755" ;
@@ -347501,7 +364002,7 @@ A Python package for inference of gene regulatory networks from noisy gene expre
     biotools:primaryContact "Uta Schulze" .
 
 <https://bio.tools/palmapper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3170,
@@ -347522,7 +364023,7 @@ A Python package for inference of gene regulatory networks from noisy gene expre
         "Gunnar Rätsch" .
 
 <https://bio.tools/palmer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0218,
         edam:topic_0602,
@@ -347543,7 +364044,7 @@ PALMER: A Constrained Biclustering Algorithm to Improve Pathway Annotation Based
     sc:url "https://dongjunchung.github.io/palmer/" .
 
 <https://bio.tools/palms> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0219,
@@ -347560,7 +364061,7 @@ PALMER: A Constrained Biclustering Algorithm to Improve Pathway Annotation Based
     sc:url "https://github.com/PALMS-gui/PALMS" .
 
 <https://bio.tools/palmsiever> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_1317,
         edam:topic_3382 ;
@@ -347576,7 +364077,7 @@ PALMER: A Constrained Biclustering Algorithm to Improve Pathway Annotation Based
     biotools:primaryContact "Thomas Pengo" .
 
 <https://bio.tools/pals> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0623,
@@ -347598,7 +364099,7 @@ PALMER: A Constrained Biclustering Algorithm to Improve Pathway Annotation Based
     biotools:primaryContact "A. Alibés" .
 
 <https://bio.tools/pals-pathway> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
@@ -347619,7 +364120,7 @@ PALMER: A Constrained Biclustering Algorithm to Improve Pathway Annotation Based
     biotools:primaryContact <https://orcid.org/0000-0002-1275-6820> .
 
 <https://bio.tools/pals-v> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0602,
@@ -347638,7 +364139,7 @@ Pathway analysis is an important task in understanding complex metabolomic data.
     sc:url "https://pals.glasgowcompbio.org/" .
 
 <https://bio.tools/palsse> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2814 ;
     sc:citation <https://doi.org/10.1186/1471-2105-6-202> ;
@@ -347651,7 +364152,7 @@ Pathway analysis is an important task in understanding complex metabolomic data.
     sc:url "http://prodata.swmed.edu/palsse/palsse.php" .
 
 <https://bio.tools/pam> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2885,
@@ -347671,7 +364172,7 @@ Pair Matcher (PaM): a computer model to optimise pairings using demographic and
     sc:url "https://github.com/eelhaik/PAM" .
 
 <https://bio.tools/pamgeneanalyzer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
         edam:topic_0601,
@@ -347688,7 +364189,7 @@ Pair Matcher (PaM): a computer model to optimise pairings using demographic and
     sc:url "https://github.com/amelbek/pamgeneAnalyzeR" .
 
 <https://bio.tools/paml> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -347708,7 +364209,7 @@ Pair Matcher (PaM): a computer model to optimise pairings using demographic and
     sc:url "http://abacus.gene.ucl.ac.uk/software/paml.html" .
 
 <https://bio.tools/pamlr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_3500,
@@ -347725,7 +364226,7 @@ Pair Matcher (PaM): a computer model to optimise pairings using demographic and
     sc:url "https://kiranlda.github.io/PAMLrManual/index.html" .
 
 <https://bio.tools/pamona> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_2229,
         edam:topic_3308,
@@ -347741,7 +364242,7 @@ Pair Matcher (PaM): a computer model to optimise pairings using demographic and
     sc:url "https://github.com/caokai1073/Pamona" .
 
 <https://bio.tools/pan-tetris> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0654 ;
     sc:description "Pan-Tetris is our interactive software tool that enables the visual inspection of gene occurrences in a pan-genome table. It allows the user to modify the composition of such pan gene groups with an aggregation technique that is inspired by the famous Tetris game." ;
@@ -347755,7 +364256,7 @@ Pair Matcher (PaM): a computer model to optimise pairings using demographic and
     sc:url "http://it.inf.uni-tuebingen.de/?page_id=920" .
 
 <https://bio.tools/pan4draft> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3168,
@@ -347773,7 +364274,7 @@ Pair Matcher (PaM): a computer model to optimise pairings using demographic and
     biotools:primaryContact "Rommel Ramos" .
 
 <https://bio.tools/panacea> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0092,
@@ -347794,7 +364295,7 @@ Pair Matcher (PaM): a computer model to optimise pairings using demographic and
     biotools:primaryContact <https://orcid.org/0000-0002-1916-1029> .
 
 <https://bio.tools/panache> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0654 ;
@@ -347809,7 +364310,7 @@ Pair Matcher (PaM): a computer model to optimise pairings using demographic and
         <https://orcid.org/0000-0003-0284-1885> .
 
 <https://bio.tools/panacota> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0623,
         edam:topic_0637,
         edam:topic_0797,
@@ -347823,7 +364324,7 @@ Pair Matcher (PaM): a computer model to optimise pairings using demographic and
     sc:url "https://github.com/gem-pasteur/PanACoTA" .
 
 <https://bio.tools/panada> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602 ;
     sc:citation <https://doi.org/10.1371/journal.pone.0078383> ;
@@ -347840,7 +364341,7 @@ Pair Matcher (PaM): a computer model to optimise pairings using demographic and
     biotools:primaryContact "Silvio C.E. Tosatto" .
 
 <https://bio.tools/panakeia> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0102,
@@ -347858,14 +364359,14 @@ Pair Matcher (PaM): a computer model to optimise pairings using demographic and
 
 <https://bio.tools/panalyzer> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ] ;
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_3247" ;
+            sc:name "Peptide identification" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0907" ;
-            sc:name "Protein family report" ;
-            sc:sameAs "http://edamontology.org/data_0907" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0907" ;
+            sc:encodingFormat "http://edamontology.org/format_3247" ;
+            sc:name "Protein family report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -347882,8 +364383,29 @@ Pair Matcher (PaM): a computer model to optimise pairings using demographic and
     sc:softwareHelp <https://code.google.com/archive/p/ehu-bio/wikis/PAnalyzer.wiki> ;
     sc:url "https://code.google.com/archive/p/ehu-bio/wikis/PAnalyzer.wiki" .
 
+<https://bio.tools/panama> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3300,
+        edam:topic_3304,
+        edam:topic_3306,
+        edam:topic_3520 ;
+    sc:citation <https://doi.org/10.3389/FNINF.2022.813940>,
+        "pmcid:PMC8959878",
+        "pubmed:35356446" ;
+    sc:description "An Open-Source Educational App for Ion Channel Biophysics Simulation." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_2426 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "Panama" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://tiger.hpc.okstate.edu/sites/shiny/anuj1/" .
+
 <https://bio.tools/panaroo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0623,
         edam:topic_0769,
@@ -347898,34 +364420,8 @@ Pair Matcher (PaM): a computer model to optimise pairings using demographic and
     sc:name "Panaroo" ;
     sc:url "https://github.com/gtonkinhill/panaroo" .
 
-<https://bio.tools/pancancer> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0203,
-        edam:topic_0602,
-        edam:topic_0634,
-        edam:topic_2640,
-        edam:topic_3360 ;
-    sc:citation <https://doi.org/10.1186/S12920-019-0634-0>,
-        "pmcid:PMC6923916",
-        "pubmed:31856825" ;
-    sc:description """Finding prognostic gene pairs for cancer from patient-specific gene networks.
-
-Dynamically constructing patient-specific gene networks.
-
-Breast invasive carcinoma (BRCA) patient-specific gene networks.
-
-Colon adenocarcinoma (COAD) patient-specific gene networks.
-
-||| COMMON LINK WITH (PUB. & NAME DIFFERENT) bio.tools/webinterviewer (INHA.AC.KR), bio.tools/pseudoviewer (INHA.AC.KR).
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'patient-specific', 'prognostic'""" ;
-    sc:featureList edam:operation_2454,
-        edam:operation_2495,
-        edam:operation_2940 ;
-    sc:name "pancancer" ;
-    sc:url "http://bclab.inha.ac.kr/pancancer" .
-
 <https://bio.tools/pancancersig> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2640,
         edam:topic_3170,
@@ -347943,7 +364439,7 @@ Colon adenocarcinoma (COAD) patient-specific gene networks.
     sc:url "https://github.com/Cheng-Lab-GitHub/PanCancer_Signature" .
 
 <https://bio.tools/panclassif> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0203,
@@ -347962,7 +364458,7 @@ Colon adenocarcinoma (COAD) patient-specific gene networks.
     biotools:primaryContact <http://orcid.org/0000-0001-5633-5473> .
 
 <https://bio.tools/pancreatlas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0625,
         edam:topic_3063,
@@ -347977,7 +364473,7 @@ Colon adenocarcinoma (COAD) patient-specific gene networks.
     sc:url "https://www.pancreatlas.org" .
 
 <https://bio.tools/panda> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -347994,7 +364490,7 @@ Colon adenocarcinoma (COAD) patient-specific gene networks.
     biotools:primaryContact "Guo-Cheng Yuan" .
 
 <https://bio.tools/panda_associations> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_0749,
@@ -348011,7 +364507,7 @@ Colon adenocarcinoma (COAD) patient-specific gene networks.
     biotools:primaryContact "Gian Gaetano Tartaglia" .
 
 <https://bio.tools/panda_xplorer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2259,
@@ -348029,7 +364525,7 @@ Colon adenocarcinoma (COAD) patient-specific gene networks.
     biotools:primaryContact "Jean-Pierre A. Koche" .
 
 <https://bio.tools/pandar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0602 ;
@@ -348050,7 +364546,7 @@ Colon adenocarcinoma (COAD) patient-specific gene networks.
         "Joseph N. Paulson" .
 
 <https://bio.tools/pandaseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0632,
@@ -348070,8 +364566,30 @@ Colon adenocarcinoma (COAD) patient-specific gene networks.
     sc:url "https://github.com/neufeld/pandaseq" ;
     biotools:primaryContact "Josh D Neufeld" .
 
+<https://bio.tools/pandemoncat> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_3299,
+        edam:topic_3305,
+        edam:topic_3324 ;
+    sc:citation <https://doi.org/10.3390/IJERPH19084783>,
+        "pmcid:PMC9029369",
+        "pubmed:35457649" ;
+    sc:description "Monitoring the COVID-19 Pandemic in Catalonia, Spain." ;
+    sc:featureList edam:operation_2429,
+        edam:operation_2940,
+        edam:operation_3454 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "PandemonCAT" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://www.udg.edu/pandemoncat" .
+
 <https://bio.tools/pandm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0654,
         edam:topic_2640,
@@ -348090,7 +364608,7 @@ Pan-cancer differential methylation (DM) analysis investigates aberrant DNA meth
     sc:url "http://www.sta.cuhk.edu.hk/YWei/PanDM.html" .
 
 <https://bio.tools/pandora> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0121,
@@ -348112,8 +364630,33 @@ Pan-cancer differential methylation (DM) analysis investigates aberrant DNA meth
     sc:url "http://www.pandora.cs.huji.ac.il" ;
     biotools:primaryContact "Webmaster" .
 
+<https://bio.tools/pandora_peptide> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0121,
+        edam:topic_0154,
+        edam:topic_0804,
+        edam:topic_2275,
+        edam:topic_3966 ;
+    sc:citation <https://doi.org/10.3389/FIMMU.2022.878762>,
+        "pmcid:PMC9127323",
+        "pubmed:35619705" ;
+    sc:description "A Fast, Anchor-Restrained Modelling Protocol for Peptide." ;
+    sc:featureList edam:operation_0224,
+        edam:operation_0478,
+        edam:operation_0481,
+        edam:operation_1812 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Apache-2.0" ;
+    sc:name "PANDORA" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://csb-pandora.readthedocs.io/en/latest/> ;
+    sc:url "https://github.com/X-lab-3D/PANDORA" .
+
 <https://bio.tools/pandoragan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -348132,38 +364675,42 @@ Antiviral peptide predictions using GAN.""" ;
 
 <https://bio.tools/pandrugs> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2299" ;
-            sc:name "Gene name" ;
-            sc:sameAs "http://edamontology.org/data_2299" ] ;
+            sc:additionalType "http://edamontology.org/data_2299" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Gene name" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1621" ;
-            sc:name "Pharmacogenomic test report" ;
-            sc:sameAs "http://edamontology.org/data_1621" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1621" ;
+            sc:name "Pharmacogenomic test report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web API" ;
-    sc:applicationSubCategory edam:topic_0622,
+    sc:applicationSubCategory edam:topic_0208,
+        edam:topic_0622,
         edam:topic_2533,
         edam:topic_2640 ;
+    sc:author "SING Research Group. Informatics Department. University of Vigo" ;
     sc:citation "pmcid:PMC5977747",
         "pubmed:29848362" ;
     sc:description "PanDrugs is a method to prioritize anticancer drug treatments according to individual genomic data. PanDrugs current version integrates data from 24 primary sources and supports 56297 drug-target associations obtained from 4804 genes and 9092 unique compounds." ;
-    sc:featureList edam:operation_3226 ;
+    sc:featureList edam:operation_2945 ;
     sc:isAccessibleForFree true ;
     sc:license "GPL-3.0" ;
     sc:name "PanDrugs" ;
     sc:operatingSystem "Linux",
         "Mac",
         "Windows" ;
+    sc:provider "BU_CNIO",
+        "CNIO" ;
     sc:softwareHelp <https://pandrugs.org/#!/help>,
         <https://pandrugs.org/pandrugs-backend/> ;
-    sc:softwareVersion "2018.06.18" ;
+    sc:softwareVersion "2018.06.18",
+        "2021.04.27" ;
     sc:url "https://www.pandrugs.org/" ;
     biotools:primaryContact <https://orcid.org/0000-0003-2773-2343>,
         "Fatima Al-Shahrour" .
 
 <https://bio.tools/panelapp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web API",
         "Web application",
@@ -348181,7 +364728,7 @@ Antiviral peptide predictions using GAN.""" ;
     sc:url "https://panelapp.genomicsengland.co.uk/" .
 
 <https://bio.tools/panelpro> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3053,
@@ -348202,7 +364749,7 @@ Antiviral peptide predictions using GAN.""" ;
     sc:url "https://projects.iq.harvard.edu/bayesmendel/panelpro" .
 
 <https://bio.tools/panev> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0625,
         edam:topic_3308,
@@ -348220,7 +364767,7 @@ Antiviral peptide predictions using GAN.""" ;
     sc:url "https://github.com/vpalombo/PANEV" .
 
 <https://bio.tools/panfp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0654,
@@ -348237,7 +364784,7 @@ Antiviral peptide predictions using GAN.""" ;
     biotools:primaryContact "Andrey A. Gorin" .
 
 <https://bio.tools/pangaea> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3071,
@@ -348254,7 +364801,7 @@ Antiviral peptide predictions using GAN.""" ;
     sc:url "https://www.pangaea.de/" .
 
 <https://bio.tools/pangaea-miner> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0218,
         edam:topic_0602,
         edam:topic_0769 ;
@@ -348270,7 +364817,7 @@ The tool extracts gene relations from PubMed abstracts and outputs the results i
     sc:url "https://github.com/ss-lab-cancerunit/pangaea" .
 
 <https://bio.tools/pangea> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2885,
@@ -348292,26 +364839,26 @@ The tool extracts gene relations from PubMed abstracts and outputs the results i
 
 <https://bio.tools/pangenome-blast> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1234" ;
-            sc:name "Sequence set (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1234" ],
+            sc:additionalType "http://edamontology.org/data_1234" ;
+            sc:encodingFormat "http://edamontology.org/format_3975" ;
+            sc:name "Sequence set (nucleic acid)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3494" ;
-            sc:name "DNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3494" ],
+            sc:additionalType "http://edamontology.org/data_0850" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Sequence set" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0850" ;
-            sc:name "Sequence set" ;
-            sc:sameAs "http://edamontology.org/data_0850" ] ;
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:encodingFormat "http://edamontology.org/format_1211" ;
+            sc:name "DNA sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0850" ;
-            sc:name "Sequence set" ;
-            sc:sameAs "http://edamontology.org/data_0850" ],
+            sc:additionalType "http://edamontology.org/data_0850" ;
+            sc:encodingFormat "http://edamontology.org/format_3975" ;
+            sc:name "Sequence set" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1383" ;
-            sc:name "Nucleic acid sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_1383" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1383" ;
+            sc:encodingFormat "http://edamontology.org/format_1333" ;
+            sc:name "Nucleic acid sequence alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0797 ;
@@ -348334,7 +364881,7 @@ The tool extracts gene relations from PubMed abstracts and outputs the results i
     sc:url "https://github.com/tischulz1/plast" .
 
 <https://bio.tools/pangia> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0637,
         edam:topic_0769,
         edam:topic_3168,
@@ -348352,8 +364899,37 @@ The bioinformatics pipeline leverages BWA/Minimap2 to identify ‘where’ reads
     sc:name "PanGIA" ;
     sc:url "https://github.com/LANL-Bioinformatics/PanGIA" .
 
+<https://bio.tools/pangolin> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0199,
+        edam:topic_3170,
+        edam:topic_3320,
+        edam:topic_3512,
+        edam:topic_3676 ;
+    sc:citation <https://doi.org/10.1186/S13059-022-02664-4>,
+        "pmcid:PMC9022248",
+        "pubmed:35449021" ;
+    sc:description "Pangolin is a deep-learning based method for predicting splice site strengths (for details, see Zeng and Li, Genome Biology 2022). It is available as a command-line tool that can be run on a VCF or CSV file containing variants of interest; Pangolin will predict changes in splice site strength due to each variant, and return a file of the same format. Pangolin's models can also be used with custom sequences." ;
+    sc:featureList edam:operation_0232,
+        edam:operation_0264,
+        edam:operation_0433,
+        edam:operation_3196,
+        edam:operation_3225 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "Pangolin" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/tkzeng/Pangolin" .
+
 <https://bio.tools/panisa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2885,
         edam:topic_3168,
         edam:topic_3299,
@@ -348377,18 +364953,18 @@ The panISa software searches for Insertion Sequences on NGS data ab initio (i.e.
 
 <https://bio.tools/pannbuilder> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1045" ;
-            sc:name "Species name" ;
-            sc:sameAs "http://edamontology.org/data_1045" ],
+            sc:additionalType "http://edamontology.org/data_1084" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data resource definition ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1084" ;
-            sc:name "Data resource definition ID" ;
-            sc:sameAs "http://edamontology.org/data_1084" ] ;
+            sc:additionalType "http://edamontology.org/data_1045" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Species name" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2080" ;
-            sc:name "Database search results" ;
-            sc:sameAs "http://edamontology.org/data_2080" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2080" ;
+            sc:encodingFormat "http://edamontology.org/format_3621" ;
+            sc:name "Database search results" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -348409,7 +364985,7 @@ The panISa software searches for Insertion Sequences on NGS data ab initio (i.e.
     biotools:primaryContact "Li Hong" .
 
 <https://bio.tools/pannotator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0654,
@@ -348426,7 +365002,7 @@ The panISa software searches for Insertion Sequences on NGS data ab initio (i.e.
     sc:url "http://bnet.egr.vcu.edu/pannotator/pannotator.php" .
 
 <https://bio.tools/pannzer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -348443,10 +365019,10 @@ The panISa software searches for Insertion Sequences on NGS data ab initio (i.e.
 
 <https://bio.tools/pannzer2> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3671" ;
-            sc:name "Text" ;
-            sc:sameAs "http://edamontology.org/data_3671" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3671" ;
+            sc:encodingFormat "http://edamontology.org/format_2200" ;
+            sc:name "Text" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121 ;
     sc:citation <https://doi.org/10.1093/nar/gky350>,
@@ -348461,7 +365037,7 @@ The panISa software searches for Insertion Sequences on NGS data ab initio (i.e.
     sc:url "http://ekhidna2.biocenter.helsinki.fi/sanspanz/" .
 
 <https://bio.tools/panoga> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0625,
         edam:topic_0634,
@@ -348480,7 +365056,7 @@ Abstract The identification of the variants that explain familial risk of a spec
     sc:url "http://akademik.bahcesehir.edu.tr/~bbgungor/panoga_protocol.zip" .
 
 <https://bio.tools/panomicon> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0659,
@@ -348499,7 +365075,7 @@ Abstract The identification of the variants that explain familial risk of a spec
     sc:url "https://toxygates.nibiohn.go.jp/panomicon" .
 
 <https://bio.tools/panoply> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
         edam:topic_2640,
@@ -348517,14 +365093,14 @@ Abstract The identification of the variants that explain familial risk of a spec
     sc:url "https://app.terra.bio/#workspaces/broad-firecloud-cptac/PANOPLY_Production_Pipelines_v1_0" .
 
 <https://bio.tools/panoptes> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "Monitor computational workflows in real-time" ;
     sc:name "panoptes" ;
     sc:softwareVersion "0.1.1" ;
     sc:url "https://github.com/panoptes-organization/panoptes" .
 
 <https://bio.tools/panorama> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -348543,7 +365119,7 @@ Abstract The identification of the variants that explain familial risk of a spec
     biotools:primaryContact "Brendan MacLean" .
 
 <https://bio.tools/panoromics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:citation <https://doi.org/10.1093/nar/gkx311>,
         "pubmed:28453651" ;
     sc:description "The massive molecular profiling of thousands of cancer patients has led to the identification of many tumor type specific driver genes. However, only a few (or none) of them are present in each individual tumor and, to enable precision oncology, we need to interpret the alterations found in a single patient. Cancer PanorOmics (http://panoromics.irbbarcelona.org) is a web-based resource to contextualize genomic variations detected in a personal cancer genome within the body of clinical and scientific evidence available
for 26 tumor types, offering complementary cohort and patient-centric views. Additionally, it explores the cellular environment of mutations by mapping them on the human interactome and providing quasiatomic structural details, whenever available. This ‘PanorOmic’ molecular view of individual tumors should contribute to the identification of actionable alterations ultimately guiding the clinical decision-making process." ;
@@ -348551,7 +365127,7 @@ Abstract The identification of the variants that explain familial risk of a spec
     sc:url "https://panoromics.irbbarcelona.org" .
 
 <https://bio.tools/panow> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654 ;
@@ -348565,7 +365141,7 @@ Abstract The identification of the variants that explain familial risk of a spec
     sc:url "http://www.math-evry.cnrs.fr/logiciels/panow" .
 
 <https://bio.tools/panp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -348584,32 +365160,51 @@ Abstract The identification of the variants that explain familial risk of a spec
     sc:url "http://bioconductor.org/packages/release/bioc/html/panp.html" ;
     biotools:primaryContact "Peter Warren" .
 
+<https://bio.tools/panprova> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0194,
+        edam:topic_0196,
+        edam:topic_3299 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC158>,
+        "pubmed:35289871" ;
+    sc:description "PANPROVA is a computational tool for simulating pangenomic evolution by evolving the complete genomic sequence of an ancestral isolate. In this way, the possibility of operating at the pre-assembly stage is enabled. Gene set variations, sequence variation and horizontal acquisition from a pool of external genomes are the evolutionary features of the tool." ;
+    sc:featureList edam:operation_0310,
+        edam:operation_3454 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "PANPROVA" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/InfOmics/PANPROVA" .
+
 <https://bio.tools/panr> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3108" ;
-            sc:name "Experimental measurement" ;
-            sc:sameAs "http://edamontology.org/data_3108" ],
+            sc:additionalType "http://edamontology.org/data_3111" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "Processed microarray data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3111" ;
-            sc:name "Processed microarray data" ;
-            sc:sameAs "http://edamontology.org/data_3111" ] ;
+            sc:additionalType "http://edamontology.org/data_3108" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "Experimental measurement" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1772" ;
-            sc:name "Score" ;
-            sc:sameAs "http://edamontology.org/data_1772" ],
+            sc:additionalType "http://edamontology.org/data_2082" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "Matrix" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2082" ;
-            sc:name "Matrix" ;
-            sc:sameAs "http://edamontology.org/data_2082" ],
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "Pathway or network" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ],
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "Plot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1772" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "Score" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -348631,7 +365226,7 @@ Abstract The identification of the variants that explain familial risk of a spec
     biotools:primaryContact "Xin Wang" .
 
 <https://bio.tools/panrgp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0196,
         edam:topic_0623,
@@ -348644,8 +365239,26 @@ Abstract The identification of the variants that explain familial risk of a spec
     sc:name "panRGP" ;
     sc:url "https://github.com/axbazin/panrgp_supdata" .
 
+<https://bio.tools/panseq> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0622 ;
+    sc:citation <https://doi.org/10.1186/1471-2105-11-461>,
+        "pmcid:PMC2949892",
+        "pubmed:20843356" ;
+    sc:description "Panseq determines the core and accessory regions among a collection of genomic sequences based on user-defined parameters. It readily extracts regions unique to a genome or group of genomes, identifies SNPs within shared core genomic regions, constructs files for use in phylogeny programs based on both the presence/absence of accessory regions and SNPs within core regions." ;
+    sc:featureList edam:operation_2403,
+        edam:operation_3209 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "panseq" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/chadlaing/Panseq" .
+
 <https://bio.tools/pansvr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3168,
@@ -348668,7 +365281,7 @@ Abstract The identification of the variants that explain familial risk of a spec
     sc:url "https://github.com/hitbc/panSVR" .
 
 <https://bio.tools/panther> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0199,
@@ -348692,7 +365305,7 @@ Abstract The identification of the variants that explain familial risk of a spec
     biotools:primaryContact "Support" .
 
 <https://bio.tools/pantherscore> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:description "Score protein sequences against the entire PANTHER HMM library and analyze your sequences." ;
@@ -348704,7 +365317,7 @@ Abstract The identification of the variants that explain familial risk of a spec
     sc:url "http://www.pantherdb.org/downloads/" .
 
 <https://bio.tools/panvizgenerator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0219,
@@ -348723,7 +365336,7 @@ Abstract The identification of the variants that explain familial risk of a spec
     biotools:primaryContact "Thomas Lin Pedersen" .
 
 <https://bio.tools/pap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0204,
@@ -348740,7 +365353,7 @@ Abstract The identification of the variants that explain familial risk of a spec
     sc:url "http://bioinformatics.wustl.edu/webTools/portalModule/PromoterSearch.do" .
 
 <https://bio.tools/papa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3053,
@@ -348755,8 +365368,29 @@ Abstract The identification of the variants that explain familial risk of a spec
     sc:softwareHelp <https://sourceforge.net/projects/papav1/> ;
     sc:url "http://sourceforge.net/projects/papav1/" .
 
+<https://bio.tools/papaml> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0084,
+        edam:topic_0749,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.3390/GENES13061090>,
+        "pmcid:PMC9222883",
+        "pubmed:35741852" ;
+    sc:description "An Improved Computational Tool to Explore Selection Pressure on Protein-Coding Sequences." ;
+    sc:featureList edam:operation_0326,
+        edam:operation_0327,
+        edam:operation_3478 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "paPAML" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/RetroWWU/paPAML" .
+
 <https://bio.tools/paparazzi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_3387 ;
     sc:citation <https://doi.org/10.1016/j.softx.2017.02.002> ;
@@ -348773,7 +365407,7 @@ Abstract The identification of the variants that explain familial risk of a spec
     biotools:primaryContact "Yann Marcon" .
 
 <https://bio.tools/papet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
         edam:topic_0634 ;
@@ -348787,7 +365421,7 @@ Abstract The identification of the variants that explain familial risk of a spec
     sc:url "https://github.com/fmansoori/PAPET" .
 
 <https://bio.tools/papi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0602,
@@ -348806,7 +365440,7 @@ Abstract The identification of the variants that explain familial risk of a spec
     biotools:primaryContact "Raphael Aggio" .
 
 <https://bio.tools/papi-variant> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3053,
         edam:topic_3120,
@@ -348823,7 +365457,7 @@ Abstract The identification of the variants that explain familial risk of a spec
     biotools:primaryContact "Riccardo Bellazzi" .
 
 <https://bio.tools/papolarity> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0749,
@@ -348842,10 +365476,10 @@ Abstract The identification of the variants that explain familial risk of a spec
 
 <https://bio.tools/pappso> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -348857,8 +365491,21 @@ Abstract The identification of the variants that explain familial risk of a spec
     sc:operatingSystem "Linux" ;
     sc:url "http://pappso.inra.fr/bioinfo/" .
 
+<https://bio.tools/paradiseo> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workbench" ;
+    sc:applicationSubCategory edam:topic_3474 ;
+    sc:description "Paradiseo is an open-source full-featured evolutionary computation framework which main purpose is to help you write your own stochastic optimization algorithms, insanely fast." ;
+    sc:license "Other" ;
+    sc:name "Paradiseo" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://gitlab.inria.fr/paradiseo/paradiseo/-/wikis/home> ;
+    sc:url "https://nojhan.github.io/paradiseo/" .
+
 <https://bio.tools/paralled-buddy-prima> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3053,
         edam:topic_3315 ;
@@ -348873,7 +365520,7 @@ Abstract The identification of the variants that explain familial risk of a spec
     biotools:primaryContact "Manish" .
 
 <https://bio.tools/parallel> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:description "GNU parallel is a shell tool for executing jobs in parallel using one or more computers. A job can be a single command or a small script that has to be run for each of the lines in the input. The typical input is a list of files, a list of hosts, a list of users, a list of URLs, or a list of tables. A job can also be a command that reads from a pipe. GNU parallel can then split the input and pipe it into commands in parallel." ;
     sc:isAccessibleForFree true ;
@@ -348884,7 +365531,7 @@ Abstract The identification of the variants that explain familial risk of a spec
     sc:url "https://www.gnu.org/software/parallel/" .
 
 <https://bio.tools/parallelgwas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3053,
@@ -348901,7 +365548,7 @@ Abstract The identification of the variants that explain familial risk of a spec
     biotools:primaryContact "Kazuharu Misawa" .
 
 <https://bio.tools/parallelnewhybrid> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3053,
         edam:topic_3056,
@@ -348919,7 +365566,7 @@ Abstract The identification of the variants that explain familial risk of a spec
     biotools:primaryContact "Brendan Wringe" .
 
 <https://bio.tools/paralyzer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0160,
@@ -348937,30 +365584,30 @@ Abstract The identification of the variants that explain familial risk of a spec
 
 <https://bio.tools/parameciumdb> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3494" ;
-            sc:name "DNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3494" ],
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:encodingFormat "http://edamontology.org/format_2305" ;
+            sc:name "Sequence features" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ],
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "DNA sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ] ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Expression data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ],
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Expression data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2080" ;
-            sc:name "Database search results" ;
-            sc:sameAs "http://edamontology.org/data_2080" ],
+            sc:additionalType "http://edamontology.org/data_0857" ;
+            sc:encodingFormat "http://edamontology.org/format_1333" ;
+            sc:name "Sequence search results" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0857" ;
-            sc:name "Sequence search results" ;
-            sc:sameAs "http://edamontology.org/data_0857" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2080" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Database search results" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0089,
@@ -348985,7 +365632,7 @@ Abstract The identification of the variants that explain familial risk of a spec
     biotools:primaryContact "Contact Form" .
 
 <https://bio.tools/paramed> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0218,
@@ -349005,7 +365652,7 @@ Abstract The identification of the variants that explain familial risk of a spec
     sc:url "https://github.com/boxiangliu/ParaMed" .
 
 <https://bio.tools/parametric-roc-curve> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3360 ;
@@ -349022,7 +365669,7 @@ Abstract The identification of the variants that explain familial risk of a spec
     biotools:primaryContact "Leonidas Bantis" .
 
 <https://bio.tools/paramol> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0176,
         edam:topic_3047,
@@ -349041,8 +365688,21 @@ Abstract The identification of the variants that explain familial risk of a spec
     biotools:primaryContact <https://orcid.org/0000-0003-0258-3433>,
         <https://orcid.org/0000-0003-2639-2746> .
 
+<https://bio.tools/parapep> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:description "ParaPep: It is a manually curated repository of experimentally validated anti-parasitic peptides and their structures. Data have been collected from research papers, published patents and other databases." ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "parapep" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/parapep/> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/parapep/" .
+
 <https://bio.tools/parasam> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3518 ;
     sc:description "ParaSAM is a high performance parallel processing implementation of the SAM (Significance Analysis of Microarrays) algorithm. The permutations are divided across the multiple nodes. The computational workload is divided among multiple CPUs and the main memory of all participating computers is utilized to avoid caching operations to the disk, which significantly decrease algorithm execution time." ;
@@ -349052,8 +365712,30 @@ Abstract The identification of the variants that explain familial risk of a spec
     sc:operatingSystem "Windows" ;
     sc:url "http://www.diacomp.org/shared/showBioSoftware.aspx?id=3" .
 
+<https://bio.tools/parasbolv> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0769,
+        edam:topic_3053,
+        edam:topic_3398,
+        edam:topic_3895 ;
+    sc:citation <https://doi.org/10.1093/SYNBIO/YSAB022>,
+        "pmcid:PMC8546602",
+        "pubmed:34712845" ;
+    sc:description "A lightweight Python library designed to simplify the development of tools that render SBOL Visual diagrams." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3435 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "paraSBOLv" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://biocomputelab.github.io/paraSBOLv/index.html> ;
+    sc:url "https://github.com/BiocomputeLab/paraSBOLv" .
+
 <https://bio.tools/paratome> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0154,
@@ -349074,8 +365756,29 @@ Abstract The identification of the variants that explain familial risk of a spec
     sc:url "http://www.ofranlab.org/paratome/" ;
     biotools:primaryContact "Vered Kunik" .
 
+<https://bio.tools/paratype> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0199,
+        edam:topic_0625,
+        edam:topic_3305,
+        edam:topic_3324,
+        edam:topic_3673 ;
+    sc:citation <https://doi.org/10.1101/2021.11.13.21266165> ;
+    sc:description "Assigns genotypes to Salmonella Paratyphi A isolates using whole-genome sequencing data." ;
+    sc:featureList edam:operation_3196,
+        edam:operation_3227,
+        edam:operation_3482 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "Paratype" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/CHRF-Genomics/Paratype" .
+
 <https://bio.tools/paraview> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_3382 ;
@@ -349093,7 +365796,7 @@ Abstract The identification of the variants that explain familial risk of a spec
     biotools:primaryContact "Kitware Inc." .
 
 <https://bio.tools/parbibit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3053 ;
@@ -349108,7 +365811,7 @@ Abstract The identification of the variants that explain familial risk of a spec
     biotools:primaryContact "Jorge González-Domínguez" .
 
 <https://bio.tools/pardre> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3168 ;
@@ -349121,8 +365824,36 @@ Abstract The identification of the variants that explain familial risk of a spec
     sc:url "http://sourceforge.net/projects/pardre/" ;
     biotools:primaryContact "Jorge González-Domínguez" .
 
+<https://bio.tools/pareidolia> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2856" ;
+            sc:encodingFormat "http://edamontology.org/format_3590" ;
+            sc:name "Structural distance matrix" ] ;
+    bsc:output [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_0951" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Statistical estimate score" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Library" ;
+    sc:applicationSubCategory edam:topic_0654,
+        edam:topic_3173,
+        edam:topic_3473 ;
+    sc:author <https://orcid.org/0000-0002-1126-1535> ;
+    sc:description "Detection of intensity changes in Hi-C patterns (chromatin loops, domain borders, ...) two groups of samples." ;
+    sc:featureList edam:operation_3731 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "pareidolia" ;
+    sc:operatingSystem "Linux",
+        "Mac" ;
+    sc:softwareHelp <https://github.com/koszullab/pareidolia>,
+        <https://pareidolia.readthedocs.io/en/latest/> ;
+    sc:softwareVersion "1.2.0" ;
+    sc:url "https://github.com/koszullab/pareidolia" .
+
 <https://bio.tools/parentchecker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3053 ;
@@ -349135,7 +365866,7 @@ Abstract The identification of the variants that explain familial risk of a spec
     sc:url "http://statgen.ucr.edu/software.html" .
 
 <https://bio.tools/parepro> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2269 ;
     sc:citation <https://doi.org/10.1186/1471-2105-8-450> ;
@@ -349149,7 +365880,7 @@ Abstract The identification of the variants that explain familial risk of a spec
     sc:url "http://www.mobioinfor.cn/parepro/index.htm" .
 
 <https://bio.tools/pareto> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_3474,
@@ -349167,7 +365898,7 @@ A framework for benchmarking clustering algorithms, using Pareto fronts to captu
     sc:url "https://github.com/ghar1821/ParetoBench" .
 
 <https://bio.tools/parfr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3053,
         edam:topic_3334,
@@ -349185,7 +365916,7 @@ A framework for benchmarking clustering algorithms, using Pareto fronts to captu
     biotools:primaryContact "Giovanni Montana" .
 
 <https://bio.tools/parglms> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3315 ;
     sc:description "support for parallelized estimation of GLMs/GEEs, catering for dispersed data" ;
@@ -349202,7 +365933,7 @@ A framework for benchmarking clustering algorithms, using Pareto fronts to captu
     biotools:primaryContact "VJ Carey" .
 
 <https://bio.tools/pargt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_3301,
         edam:topic_3474 ;
@@ -349217,7 +365948,7 @@ A framework for benchmarking clustering algorithms, using Pareto fronts to captu
     sc:url "https://github.com/abu034004/PARGT" .
 
 <https://bio.tools/pariga> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1371/journal.pone.0062224> ;
@@ -349232,7 +365963,7 @@ A framework for benchmarking clustering algorithms, using Pareto fronts to captu
         "Massimiliano Orsini" .
 
 <https://bio.tools/paris> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0622,
@@ -349247,7 +365978,7 @@ A framework for benchmarking clustering algorithms, using Pareto fronts to captu
     biotools:primaryContact "Jonathan L. Haines" .
 
 <https://bio.tools/parkes_ega_matlab> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3277,
         edam:topic_3407 ;
@@ -349261,15 +365992,49 @@ A framework for benchmarking clustering algorithms, using Pareto fronts to captu
     sc:url "https://www.mathworks.com/matlabcentral/fileexchange/59671-4oh4-parkes_ega_matlab" ;
     biotools:primaryContact "Rupert Thomas" .
 
+<https://bio.tools/parkvfinder> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_0883" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Structure" ] ;
+    bsc:output [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2878" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Protein structural motif" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Plug-in" ;
+    sc:applicationSubCategory edam:topic_0081,
+        edam:topic_0166,
+        edam:topic_1317,
+        edam:topic_3332 ;
+    sc:author <https://orcid.org/0000-0002-6800-4425> ;
+    sc:citation <https://doi.org/10.1016/j.softx.2020.100606> ;
+    sc:description "Parallel KVFinder (parKVFinder) is an open-source software designed for the detection and spatial characterization (shape, volume, area and surrounding residues) of any type of biomolecular cavity. parKVFinder is available alongside an easy-to-use PyMOL plugin (PyMOL2 parKVFinder Tools) with an intuitive graphical user interface that allows users to explore customizable parameters for cavity detection and characterization." ;
+    sc:featureList edam:operation_0250,
+        edam:operation_2575,
+        edam:operation_3351 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "parKVFinder" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:provider <https://orcid.org/0000-0002-1287-8019> ;
+    sc:softwareHelp <https://github.com/LBC-LNBio/parKVFinder/wiki> ;
+    sc:url "https://github.com/LBC-LNBio/parKVFinder" ;
+    biotools:primaryContact <https://orcid.org/0000-0002-1287-8019>,
+        <https://orcid.org/0000-0002-6800-4425> .
+
 <https://bio.tools/parliament2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:description "Ensemble structural variant caller on short-read data" ;
     sc:name "Parliament2" ;
     sc:url "https://github.com/slzarate/parliament2" .
 
 <https://bio.tools/parmatt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0081 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btz224> ;
@@ -349283,7 +366048,7 @@ A framework for benchmarking clustering algorithms, using Pareto fronts to captu
     sc:url "https://biokinet.belozersky.msu.ru/parmatt" .
 
 <https://bio.tools/parmigene> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btr274>,
@@ -349302,7 +366067,7 @@ A framework for benchmarking clustering algorithms, using Pareto fronts to captu
     biotools:primaryContact "Chiara Romualdi" .
 
 <https://bio.tools/parody> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2269,
@@ -349320,8 +366085,27 @@ A framework for benchmarking clustering algorithms, using Pareto fronts to captu
     sc:url "http://bioconductor.org/packages/release/bioc/html/parody.html" ;
     biotools:primaryContact "VJ Carey" .
 
+<https://bio.tools/parrot> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_2828,
+        edam:topic_3384,
+        edam:topic_3452 ;
+    sc:citation <https://doi.org/10.1017/S143192762101391X>,
+        "pubmed:35039098" ;
+    sc:description "A Pilot Study on the Open Access Provision of Particle-Discrete Tomographic Datasets." ;
+    sc:featureList edam:operation_2422,
+        edam:operation_3457,
+        edam:operation_3695 ;
+    sc:isAccessibleForFree true ;
+    sc:name "PARROT" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://parrot.tu-freiberg.de" .
+
 <https://bio.tools/pars> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0176,
@@ -349338,7 +366122,7 @@ A framework for benchmarking clustering algorithms, using Pareto fronts to captu
     biotools:primaryContact "Xavier Daura" .
 
 <https://bio.tools/parsefiles-gofiles> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0091,
@@ -349355,7 +366139,7 @@ A framework for benchmarking clustering algorithms, using Pareto fronts to captu
     biotools:primaryContact "Maya Galili" .
 
 <https://bio.tools/parseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3170,
@@ -349372,7 +366156,7 @@ A framework for benchmarking clustering algorithms, using Pareto fronts to captu
         "Pierre Nicolas" .
 
 <https://bio.tools/parsesnp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0199,
@@ -349389,7 +366173,7 @@ A framework for benchmarking clustering algorithms, using Pareto fronts to captu
     sc:url "http://www.proweb.org/parsesnp/" .
 
 <https://bio.tools/parsmurf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3303,
         edam:topic_3372,
         edam:topic_3474,
@@ -349407,7 +366191,7 @@ A framework for benchmarking clustering algorithms, using Pareto fronts to captu
     sc:url "https://github.com/AnacletoLAB/parSMURF" .
 
 <https://bio.tools/parsnip> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0123,
@@ -349425,7 +366209,7 @@ A framework for benchmarking clustering algorithms, using Pareto fronts to captu
     biotools:primaryContact "Gwo-Yu Chuang" .
 
 <https://bio.tools/parsnp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_2885,
@@ -349444,7 +366228,7 @@ A framework for benchmarking clustering algorithms, using Pareto fronts to captu
     biotools:primaryContact "Maryland Bioinformatics Labs" .
 
 <https://bio.tools/partek_genomics_suite> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0085,
         edam:topic_3169,
@@ -349463,7 +366247,7 @@ A framework for benchmarking clustering algorithms, using Pareto fronts to captu
     biotools:primaryContact "Partek" .
 
 <https://bio.tools/partest> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3070,
@@ -349479,7 +366263,7 @@ A framework for benchmarking clustering algorithms, using Pareto fronts to captu
     biotools:primaryContact "Giuseppe Cardillo" .
 
 <https://bio.tools/particlechromo3d> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0654,
@@ -349494,7 +366278,7 @@ A framework for benchmarking clustering algorithms, using Pareto fronts to captu
     sc:url "https://github.com/OluwadareLab/ParticleChromo3D" .
 
 <https://bio.tools/particlestats> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_2269 ;
@@ -349511,7 +366295,7 @@ A framework for benchmarking clustering algorithms, using Pareto fronts to captu
     biotools:primaryContact "Russell Hamilton" .
 
 <https://bio.tools/parties> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0621,
@@ -349528,7 +366312,7 @@ A framework for benchmarking clustering algorithms, using Pareto fronts to captu
     biotools:primaryContact "Linda Sperling" .
 
 <https://bio.tools/partifold> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0130,
@@ -349545,7 +366329,7 @@ A framework for benchmarking clustering algorithms, using Pareto fronts to captu
     sc:url "http://partifold.csail.mit.edu/" .
 
 <https://bio.tools/partigenedb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0621,
@@ -349566,7 +366350,7 @@ A framework for benchmarking clustering algorithms, using Pareto fronts to captu
     biotools:primaryContact "Dr. John Parkinson" .
 
 <https://bio.tools/partition> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_2269,
@@ -349582,7 +366366,7 @@ A framework for benchmarking clustering algorithms, using Pareto fronts to captu
     biotools:primaryContact "K.J. Dawson" .
 
 <https://bio.tools/partition_r> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTZ661>,
         "pubmed:31504178" ;
@@ -349592,7 +366376,7 @@ A framework for benchmarking clustering algorithms, using Pareto fronts to captu
     sc:url "https://cran.r-project.org/package=partition" .
 
 <https://bio.tools/partr2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2269 ;
     sc:citation <https://doi.org/10.1101/2020.07.26.221168> ;
@@ -349603,7 +366387,7 @@ A framework for benchmarking clustering algorithms, using Pareto fronts to captu
     sc:url "https://github.com/mastoffel/partR2" .
 
 <https://bio.tools/partseg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0611,
         edam:topic_0625,
@@ -349620,7 +366404,7 @@ A framework for benchmarking clustering algorithms, using Pareto fronts to captu
     sc:url "https://4dnucleome.cent.uw.edu.pl/PartSeg/" .
 
 <https://bio.tools/partsgenie> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3125,
@@ -349638,7 +366422,7 @@ A framework for benchmarking clustering algorithms, using Pareto fronts to captu
     biotools:primaryContact "Neil Swainston" .
 
 <https://bio.tools/pasa-proteomics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -349665,7 +366449,7 @@ Proteomics Analysis of Serum Antibodies web server.
     sc:url "https://pasa.tau.ac.il" .
 
 <https://bio.tools/pascal> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0203,
         edam:topic_0602,
@@ -349684,7 +366468,7 @@ BACKGROUND:Attention-Deficit Hyperactivity Disorder (ADHD) is a complex neurodev
     sc:url "https://www2.unil.ch/cbg/index.php?title=Pascal" .
 
 <https://bio.tools/pasd-qc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3168,
@@ -349704,7 +366488,7 @@ BACKGROUND:Attention-Deficit Hyperactivity Disorder (ADHD) is a complex neurodev
         "Peter Park" .
 
 <https://bio.tools/pash> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3173,
         edam:topic_3295 ;
@@ -349718,7 +366502,7 @@ BACKGROUND:Attention-Deficit Hyperactivity Disorder (ADHD) is a complex neurodev
         "Elke Norwig-Eastaugh" .
 
 <https://bio.tools/pasha> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196 ;
     sc:citation <https://doi.org/10.1186/1471-2105-12-354> ;
@@ -349732,7 +366516,7 @@ BACKGROUND:Attention-Deficit Hyperactivity Disorder (ADHD) is a complex neurodev
     sc:url "http://pasha.sourceforge.net/" .
 
 <https://bio.tools/pasmet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2259,
@@ -349750,7 +366534,7 @@ BACKGROUND:Attention-Deficit Hyperactivity Disorder (ADHD) is a complex neurodev
     sc:url "http://pasmet.riken.jp/" .
 
 <https://bio.tools/pass> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btp087>,
@@ -349771,7 +366555,7 @@ BACKGROUND:Attention-Deficit Hyperactivity Disorder (ADHD) is a complex neurodev
     biotools:primaryContact "Davide Campagna" .
 
 <https://bio.tools/pass2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -349789,7 +366573,7 @@ BACKGROUND:Attention-Deficit Hyperactivity Disorder (ADHD) is a complex neurodev
     biotools:primaryContact "Prof. R. Sowdhamini" .
 
 <https://bio.tools/passer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3336,
         edam:topic_3373,
@@ -349811,7 +366595,7 @@ Allostery is the process by which proteins transmit perturbations caused by the
     sc:url "https://passer.smu.edu" .
 
 <https://bio.tools/passim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0605,
         edam:topic_3678 ;
@@ -349827,7 +366611,7 @@ The PASSIM consists of the two parts:""" ;
     sc:url "http://passim.sourceforge.net/" .
 
 <https://bio.tools/passion> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0659,
         edam:topic_3474,
@@ -349842,7 +366626,7 @@ The PASSIM consists of the two parts:""" ;
     sc:url "http://flagship.erc.monash.edu/PASSION/" .
 
 <https://bio.tools/past> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0154,
@@ -349866,14 +366650,14 @@ The PASSIM consists of the two parts:""" ;
 
 <https://bio.tools/pasta> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:encodingFormat "http://edamontology.org/format_3556" ;
+            sc:name "Sequence features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -349895,7 +366679,7 @@ The PASSIM consists of the two parts:""" ;
     biotools:primaryContact <http://orcid.org/0000-0003-4525-7793> .
 
 <https://bio.tools/pastaq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -349916,18 +366700,15 @@ The PASSIM consists of the two parts:""" ;
 
 <https://bio.tools/pasteseq> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ],
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -349957,7 +366738,7 @@ The PASSIM consists of the two parts:""" ;
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/pasteseq.html" .
 
 <https://bio.tools/pasv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_0749,
@@ -349979,7 +366760,7 @@ An automated pipeline for protein active site validation.""" ;
     sc:url "https://github.com/mooreryan/pasv" .
 
 <https://bio.tools/pat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2830,
         edam:topic_3297,
@@ -349996,7 +366777,7 @@ An automated pipeline for protein active site validation.""" ;
     biotools:primaryContact "Philip M. Kim" .
 
 <https://bio.tools/patbank> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0659,
@@ -350011,7 +366792,7 @@ An automated pipeline for protein active site validation.""" ;
     biotools:primaryContact "M.Boccara" .
 
 <https://bio.tools/patbox> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0081,
@@ -350028,7 +366809,7 @@ An automated pipeline for protein active site validation.""" ;
     biotools:primaryContact "Dan Søndergaard" .
 
 <https://bio.tools/patch-seq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0632,
         edam:topic_2229,
@@ -350043,7 +366824,7 @@ An automated pipeline for protein active site validation.""" ;
     sc:url "https://github.com/AllenInstitute/patchseqtools" .
 
 <https://bio.tools/patch-surfer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0128,
@@ -350060,7 +366841,7 @@ An automated pipeline for protein active site validation.""" ;
     biotools:primaryContact "Daisuke Kihara" .
 
 <https://bio.tools/patchd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0128,
@@ -350078,7 +366859,7 @@ An automated pipeline for protein active site validation.""" ;
     biotools:primaryContact "Elisabeth R. M. Tillier" .
 
 <https://bio.tools/patchdock> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0081,
@@ -350105,7 +366886,7 @@ An automated pipeline for protein active site validation.""" ;
     biotools:primaryContact "PatchDock Administrator" .
 
 <https://bio.tools/patchfinder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_1317,
         edam:topic_2275 ;
@@ -350122,8 +366903,29 @@ An automated pipeline for protein active site validation.""" ;
     sc:softwareVersion "1" ;
     sc:url "http://patchfinder.tau.ac.il/" .
 
+<https://bio.tools/patchman> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0166,
+        edam:topic_0820,
+        edam:topic_2275,
+        edam:topic_3306 ;
+    sc:citation <https://doi.org/10.1073/PNAS.2121153119>,
+        "pubmed:35482919" ;
+    sc:description "Matching protein surface structural patches for high-resolution blind peptide docking." ;
+    sc:featureList edam:operation_0479,
+        edam:operation_3216,
+        edam:operation_3899 ;
+    sc:isAccessibleForFree true ;
+    sc:name "PatchMAN" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://furmanlab.cs.huji.ac.il/patchman/" .
+
 <https://bio.tools/patchperpixmatch> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0203,
@@ -350143,14 +366945,12 @@ An automated pipeline for protein active site validation.""" ;
 
 <https://bio.tools/patchwork> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ] ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:name "Nucleic acid sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:name "Sequence variations" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0622,
@@ -350167,8 +366967,37 @@ An automated pipeline for protein active site validation.""" ;
     sc:url "http://patchwork.r-forge.r-project.org/" ;
     biotools:primaryContact "Sebastian Dilorenzo" .
 
+<https://bio.tools/patchwork_protein> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein structure" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0128,
+        edam:topic_0130,
+        edam:topic_0154,
+        edam:topic_0601 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAC252>,
+        "pubmed:35438792" ;
+    sc:description "patcHwork is a user-friendly web-server that identifies amino acids of proteins that undergo a charge-shift when the pH assumes two user-defined values. For sequence functionality, users may submit a FASTA file with up to ten thousand amino acid sequences (max 20MB). For structure functionality, users may submit a single 3D structure (PDB) file or a zip file with multiple PDB files (max 20MB) for batch processing." ;
+    sc:featureList edam:operation_0272,
+        edam:operation_0337,
+        edam:operation_0394,
+        edam:operation_1839 ;
+    sc:isAccessibleForFree true ;
+    sc:name "patcHwork" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://patchwork.biologie.uni-freiburg.de/" .
+
 <https://bio.tools/patentdata> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -350191,7 +367020,7 @@ An automated pipeline for protein active site validation.""" ;
     biotools:primaryContact "Contact Form" .
 
 <https://bio.tools/patentin> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3071 ;
@@ -350204,39 +367033,8 @@ An automated pipeline for protein active site validation.""" ;
     sc:softwareVersion "3.5.1" ;
     sc:url "http://www.uspto.gov/patents-getting-started/patent-basics/types-patent-applications/utility-patent/checker/patentin" .
 
-<https://bio.tools/patents> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0634,
-        edam:topic_0780,
-        edam:topic_3400,
-        edam:topic_3421 ;
-    sc:citation <https://doi.org/10.2174/1872213X13666190426164717>,
-        "pubmed:31814546" ;
-    sc:description """Recent Patents and Discovery of Anti-inflammatory Agents from Marine Source.
-
-Google er tilgængelig på: Føroyskt.
-
-Complete Patent Searching Database and Patent Data Analytics Services.
-
-Discover the latest inventions. Find the future.
-
-New US patent applications weekly - BEFORE the USPTO decision to grant/deny.
-
-Learn more about our industry leading patent landscaping and analytics tool, AcclaimIP.
-
-Distillation of data, trends, news, and top thoughts of the week in the world of Intellectual Property.
-
-Recent documents: US Patents US Applications US Design Patents.
-
-Full Directory of Top Organizations Login for PDFs & Patent Monitoring INVENTOR'S EDGE - Marketing for Inventors.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'uspto', 'searchsimp', 'freshpatents', 'freepatentsonline'""" ;
-    sc:featureList edam:operation_0306,
-        edam:operation_2421 ;
-    sc:name "patents" ;
-    sc:url "http://www.google.com/patents" .
-
 <https://bio.tools/patern> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0654,
@@ -350251,7 +367049,7 @@ Full Directory of Top Organizations Login for PDFs & Patent Monitoring INVENTOR'
     biotools:primaryContact "Michael Krawczak" .
 
 <https://bio.tools/path> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3063,
@@ -350272,7 +367070,7 @@ Full Directory of Top Organizations Login for PDFs & Patent Monitoring INVENTOR'
     sc:url "https://ouyanglab.shinyapps.io/PATH/" .
 
 <https://bio.tools/path2models> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0622,
@@ -350290,7 +367088,7 @@ Full Directory of Top Organizations Login for PDFs & Patent Monitoring INVENTOR'
     biotools:primaryContact "Nicolas Le Novère" .
 
 <https://bio.tools/path2ppi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0128,
@@ -350308,7 +367106,7 @@ Full Directory of Top Organizations Login for PDFs & Patent Monitoring INVENTOR'
     biotools:primaryContact "Oliver Philipp" .
 
 <https://bio.tools/pathDIP> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -350330,31 +367128,8 @@ pathDIP is an annotated database of signaling cascades in human and non-human or
     sc:name "pathDIP" ;
     sc:url "http://ophid.utoronto.ca/pathDIP" .
 
-<https://bio.tools/pathDIP_4> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0080,
-        edam:topic_0121,
-        edam:topic_0602,
-        edam:topic_0659,
-        edam:topic_3500 ;
-    sc:citation <https://doi.org/10.1093/NAR/GKZ989>,
-        "pubmed:31733064" ;
-    sc:description """an extended pathway annotations and enrichment analysis resource for human, model organisms and domesticated species.
-
-Search Genes Search miRNAs Search Pathways API Download Statistics Documentation Publications Team Contact.
-
-pathDIP is an annotated database of signaling cascades in human and non-human organisms, comprising core pathways from major curated pathways databases, and pathways predicted based on orthology, and by using physical protein interactions. Data integration and predictions increase coverage of pathway annotations for human proteome to 92%. pathDIP annotates 122,131 unique proteins in 6,401 pathways in 17 organisms (including 18,454 human proteins), annotates 36,216 pathway orphans (including 5,366 human proteins), and provides multiple query, analysis and output options.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'pathDIP'""" ;
-    sc:featureList edam:operation_0277,
-        edam:operation_2421,
-        edam:operation_3083,
-        edam:operation_3439,
-        edam:operation_3501 ;
-    sc:name "pathDIP 4" ;
-    sc:url "http://ophid.utoronto.ca/pathDIP" .
-
 <https://bio.tools/pathadin> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3382,
         edam:topic_3474 ;
@@ -350367,7 +367142,7 @@ pathDIP is an annotated database of signaling cascades in human and non-human or
     sc:url "https://gitlab.com/Digipathology/Pathadin" .
 
 <https://bio.tools/pathbase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1177/0300985810374845> ;
@@ -350382,7 +367157,7 @@ pathDIP is an annotated database of signaling cascades in human and non-human or
     sc:url "http://www.pathbase.net/" .
 
 <https://bio.tools/pathbinder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0780,
@@ -350399,7 +367174,7 @@ pathDIP is an annotated database of signaling cascades in human and non-human or
     biotools:primaryContact "Lifeng Zhang" .
 
 <https://bio.tools/pathblast> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0128,
@@ -350420,7 +367195,7 @@ pathDIP is an annotated database of signaling cascades in human and non-human or
     biotools:primaryContact "Support" .
 
 <https://bio.tools/pathdeseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -350437,7 +367212,7 @@ pathDIP is an annotated database of signaling cascades in human and non-human or
     biotools:primaryContact "Agus Salim" .
 
 <https://bio.tools/pathdnn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0202,
         edam:topic_0602,
@@ -350454,7 +367229,7 @@ Predict the drug sensitivity to cancer cells.""" ;
     sc:url "http://pathdnn.denglab.org" .
 
 <https://bio.tools/pathema> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0621,
@@ -350475,7 +367250,7 @@ Predict the drug sensitivity to cancer cells.""" ;
     biotools:primaryContact "Lauren Brinkac" .
 
 <https://bio.tools/pathexnet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -350501,7 +367276,7 @@ Predict the drug sensitivity to cancer cells.""" ;
     sc:url "https://bioinformatics.cing.ac.cy/PathExNET" .
 
 <https://bio.tools/pathexpand> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0602,
@@ -350514,10 +367289,11 @@ Predict the drug sensitivity to cancer cells.""" ;
         "Mac",
         "Windows" ;
     sc:softwareHelp <http://www.pathexpand.org/#formhelp> ;
-    sc:url "http://www.pathexpand.org/" .
+    sc:url "http://www.pathexpand.org/" ;
+    biotools:primaryContact <https://orcid.org/0000-0003-3977-7469> .
 
 <https://bio.tools/pathexpress> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -350535,7 +367311,7 @@ Predict the drug sensitivity to cancer cells.""" ;
     sc:url "http://bioinfoserver.rsbs.anu.edu.au/utils/PathExpress/" .
 
 <https://bio.tools/pathext> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0625,
         edam:topic_3172,
@@ -350553,7 +367329,7 @@ We provide a computational tool - PathExt, which identifies differentially activ
     sc:url "https://github.com/NarmadaSambaturu/PathExt" .
 
 <https://bio.tools/pathfams> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0114,
@@ -350578,38 +367354,31 @@ We provide a computational tool - PathExt, which identifies differentially activ
 
 <https://bio.tools/pathfindR> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1026" ;
-            sc:name "Gene symbol" ;
-            sc:sameAs "http://edamontology.org/data_1026" ],
+            sc:additionalType "http://edamontology.org/data_1026" ;
+            sc:name "Gene symbol" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1669" ;
-            sc:name "P-value" ;
-            sc:sameAs "http://edamontology.org/data_1669" ],
+            sc:additionalType "http://edamontology.org/data_3753" ;
+            sc:name "Over-representation data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3753" ;
-            sc:name "Over-representation data" ;
-            sc:sameAs "http://edamontology.org/data_3753" ] ;
+            sc:additionalType "http://edamontology.org/data_1669" ;
+            sc:name "P-value" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1669" ;
-            sc:name "P-value" ;
-            sc:sameAs "http://edamontology.org/data_1669" ],
+            sc:additionalType "http://edamontology.org/data_3753" ;
+            sc:name "Over-representation data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ],
+            sc:additionalType "http://edamontology.org/data_3753" ;
+            sc:encodingFormat "http://edamontology.org/format_3166" ;
+            sc:name "Over-representation data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3753" ;
-            sc:name "Over-representation data" ;
-            sc:sameAs "http://edamontology.org/data_3753" ],
+            sc:additionalType "http://edamontology.org/data_1669" ;
+            sc:name "P-value" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ],
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:name "Plot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3753" ;
-            sc:name "Over-representation data" ;
-            sc:sameAs "http://edamontology.org/data_3753" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -350637,7 +367406,7 @@ We provide a computational tool - PathExt, which identifies differentially activ
     biotools:primaryContact <https://orcid.org/0000-0003-2090-3621> .
 
 <https://bio.tools/pathfinder-cancer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0102,
         edam:topic_2269,
@@ -350655,14 +367424,13 @@ PathFinder is a python script developed in a Windows 64-bit architecture, and do
 
 <https://bio.tools/pathicular> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ] ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:encodingFormat "http://edamontology.org/format_3477" ;
+            sc:name "Pathway or network" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:name "Pathway or network" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0602 ;
     sc:citation <https://doi.org/10.1186/gb-2010-11-3-r32> ;
@@ -350678,7 +367446,7 @@ PathFinder is a python script developed in a Windows 64-bit architecture, and do
     sc:url "http://bioinformatics.psb.ugent.be/software/details/Pathicular" .
 
 <https://bio.tools/pathifier> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0602,
@@ -350697,7 +367465,7 @@ PathFinder is a python script developed in a Windows 64-bit architecture, and do
     biotools:primaryContact "Assif Yitzhaky" .
 
 <https://bio.tools/pathiways> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -350720,7 +367488,7 @@ PathFinder is a python script developed in a Windows 64-bit architecture, and do
     biotools:primaryContact "Contact Form" .
 
 <https://bio.tools/pathjam> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3071 ;
@@ -350736,7 +367504,7 @@ PathFinder is a python script developed in a Windows 64-bit architecture, and do
     sc:url "http://www.pathjam.org/server/api/" .
 
 <https://bio.tools/pathme-clustering> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0634,
         edam:topic_0659,
@@ -350753,7 +367521,7 @@ PathFinder is a python script developed in a Windows 64-bit architecture, and do
     sc:url "https://github.com/AminaLEM/PathME" .
 
 <https://bio.tools/pathml> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3382,
@@ -350769,7 +367537,7 @@ PathFinder is a python script developed in a Windows 64-bit architecture, and do
     biotools:primaryContact <https://orcid.org/0000-0002-2784-5308> .
 
 <https://bio.tools/pathmodel> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2259,
         edam:topic_3172 ;
@@ -350785,7 +367553,7 @@ PathFinder is a python script developed in a Windows 64-bit architecture, and do
     biotools:primaryContact <https://orcid.org/0000-0002-8566-7482> .
 
 <https://bio.tools/pathnet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -350806,7 +367574,7 @@ PathFinder is a python script developed in a Windows 64-bit architecture, and do
     biotools:primaryContact "Jason B. Smith" .
 
 <https://bio.tools/pathofact> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0634,
         edam:topic_0769,
@@ -350821,7 +367589,7 @@ PathFinder is a python script developed in a Windows 64-bit architecture, and do
     sc:url "https://git-r3lab.uni.lu/laura.denies/PathoFact" .
 
 <https://bio.tools/pathofusion> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_0769,
@@ -350842,14 +367610,14 @@ A deep learning based framework for recognition and fusion of multimodal histopa
 
 <https://bio.tools/pathogenfinder> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_2200" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2955" ;
-            sc:name "Sequence report" ;
-            sc:sameAs "http://edamontology.org/data_2955" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2955" ;
+            sc:encodingFormat "http://edamontology.org/format_2333" ;
+            sc:name "Sequence report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3324 ;
     sc:citation <https://doi.org/10.1371/journal.pone.0077302> ;
@@ -350866,7 +367634,7 @@ A deep learning based framework for recognition and fusion of multimodal histopa
     biotools:primaryContact "Mette Voldby Larsen" .
 
 <https://bio.tools/pathome-drug> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0602,
@@ -350888,7 +367656,7 @@ A deep learning based framework for recognition and fusion of multimodal histopa
     sc:url "http://statgen.snu.ac.kr/software/pathome" .
 
 <https://bio.tools/pathonet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3315,
         edam:topic_3382,
@@ -350906,8 +367674,29 @@ A deep learning based framework for recognition and fusion of multimodal histopa
     sc:url "https://github.com/SHIDCenter/PathoNet" ;
     biotools:primaryContact "Amirreza Dehghanian" .
 
+<https://bio.tools/pathonoia> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0099,
+        edam:topic_0203,
+        edam:topic_3170,
+        edam:topic_3174,
+        edam:topic_3837 ;
+    sc:citation <https://doi.org/10.1101/2022.01.19.476681> ;
+    sc:description "Pathogen Detection in RNA-Seq Data with Pathonoia." ;
+    sc:featureList edam:operation_3436,
+        edam:operation_3460,
+        edam:operation_3463 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "Pathonoia" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/kepsi/Pathonoia" .
+
 <https://bio.tools/pathoqc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:description "PATHOQC is a quality control and preprocessing standalone program for a high-throughput dataset. PATHOQC combines three commonly-used quality control programs (FastQC, cutadapt, and prinseq-lite) into one package that can handle a variety type of NGS dataset in a parallel computation." ;
@@ -350918,7 +367707,7 @@ A deep learning based framework for recognition and fusion of multimodal histopa
     sc:url "http://jlab.bu.edu/software/" .
 
 <https://bio.tools/pathoscope> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0622,
@@ -350936,7 +367725,7 @@ A deep learning based framework for recognition and fusion of multimodal histopa
         "William Evan Johnson" .
 
 <https://bio.tools/pathospotter-k> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3300,
@@ -350954,7 +367743,7 @@ A deep learning based framework for recognition and fusion of multimodal histopa
     biotools:primaryContact "George Oliveira Barros" .
 
 <https://bio.tools/pathostat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -350975,7 +367764,7 @@ A deep learning based framework for recognition and fusion of multimodal histopa
     biotools:primaryContact "Solaiappan Manimaran" .
 
 <https://bio.tools/pathpred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0602,
@@ -350997,7 +367786,7 @@ A deep learning based framework for recognition and fusion of multimodal histopa
     biotools:primaryContact "Contact Form" .
 
 <https://bio.tools/pathprint> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203 ;
     sc:citation <https://doi.org/10.1186/gm472>,
@@ -351016,7 +367805,7 @@ A deep learning based framework for recognition and fusion of multimodal histopa
     biotools:primaryContact "Sokratis Kariotis" .
 
 <https://bio.tools/pathrender> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0602,
@@ -351035,7 +367824,7 @@ A deep learning based framework for recognition and fusion of multimodal histopa
     biotools:primaryContact "Vince Carey" .
 
 <https://bio.tools/pathrings> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602 ;
@@ -351053,7 +367842,7 @@ A deep learning based framework for recognition and fusion of multimodal histopa
     biotools:primaryContact "Admin" .
 
 <https://bio.tools/pathrnet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -351074,7 +367863,7 @@ A deep learning based framework for recognition and fusion of multimodal histopa
         "yufei.huang@utsa.edu" .
 
 <https://bio.tools/pathscore> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2533,
@@ -351091,7 +367880,7 @@ A deep learning based framework for recognition and fusion of multimodal histopa
     biotools:primaryContact "Gaffney SG" .
 
 <https://bio.tools/pathsupcre8> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0602,
         edam:topic_0821,
@@ -351109,7 +367898,7 @@ PATHcre8 is an open-access online tool for heterologous biosynthesis pathway sea
     sc:url "https://www.cbrc.kaust.edu.sa/pathcre8/" .
 
 <https://bio.tools/pathvar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0602,
@@ -351127,8 +367916,20 @@ PATHcre8 is an open-access online tool for heterologous biosynthesis pathway sea
     sc:url "http://bioconductor.org/packages/release/bioc/html/pathVar.html" ;
     biotools:primaryContact "Samuel Zimmerman" .
 
+<https://bio.tools/pathvarweb> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0085 ;
+    sc:citation <https://doi.org/10.1093/bioinformatics/btr656>,
+        "pmcid:PMC3268235",
+        "pubmed:22123829" ;
+    sc:description "PathVar, a web-application to study how the variance of expression levels across genes/proteins in cellular pathways changes under different experimental conditions, and to extract patterns for sample clustering and classification." ;
+    sc:name "PathVar" ;
+    sc:softwareHelp <https://lcsb-pathvar.uni.lu/pathvar/tutorial.html> ;
+    sc:url "http://pathvar.embl.de/" .
+
 <https://bio.tools/pathview> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -351151,7 +367952,7 @@ PATHcre8 is an open-access online tool for heterologous biosynthesis pathway sea
     biotools:primaryContact "Weijun Luo" .
 
 <https://bio.tools/pathview_web> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0602 ;
@@ -351166,7 +367967,7 @@ PATHcre8 is an open-access online tool for heterologous biosynthesis pathway sea
     biotools:primaryContact "Support" .
 
 <https://bio.tools/pathvisio> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2259,
@@ -351193,7 +367994,7 @@ PATHcre8 is an open-access online tool for heterologous biosynthesis pathway sea
         "Martina Kutmon" .
 
 <https://bio.tools/pathvisiorpc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2259,
@@ -351212,7 +368013,7 @@ PATHcre8 is an open-access online tool for heterologous biosynthesis pathway sea
     biotools:primaryContact "Anwesha Bohler" .
 
 <https://bio.tools/pathwalks> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0602,
         edam:topic_0634,
@@ -351229,7 +368030,7 @@ PATHcre8 is an open-access online tool for heterologous biosynthesis pathway sea
     sc:url "https://github.com/vagkaratzas/PathWalks" .
 
 <https://bio.tools/pathway> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0602,
@@ -351250,7 +368051,7 @@ Pathway Tools is a comprehensive systems biology software system that is associa
     sc:url "http://pathwaytools.com" .
 
 <https://bio.tools/pathway-pdt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3053,
@@ -351264,7 +368065,7 @@ Pathway Tools is a comprehensive systems biology software system that is associa
     sc:url "http://sourceforge.net/projects/pathway-pdt" .
 
 <https://bio.tools/pathway2vec> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0154,
         edam:topic_0602,
@@ -351280,7 +368081,7 @@ Pathway Tools is a comprehensive systems biology software system that is associa
     sc:url "https://github.com/hallamlab/pathway2vec" .
 
 <https://bio.tools/pathway_commons> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2259 ;
@@ -351296,7 +368097,7 @@ Pathway Tools is a comprehensive systems biology software system that is associa
     sc:url "http://www.pathwaycommons.org/pc/webservice.do?cmd=help" .
 
 <https://bio.tools/pathway_explorer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -351311,7 +368112,7 @@ Pathway Tools is a comprehensive systems biology software system that is associa
     sc:url "https://pathwayexplorer.genome.tugraz.at/" .
 
 <https://bio.tools/pathway_extraction> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3407 ;
@@ -351328,7 +368129,7 @@ Pathway Tools is a comprehensive systems biology software system that is associa
     sc:url "http://rsat.bigre.ulb.ac.be/rsat/index_neat.html" .
 
 <https://bio.tools/pathway_hunter_tool> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0602,
@@ -351350,7 +368151,7 @@ Pathway Tools is a comprehensive systems biology software system that is associa
     biotools:primaryContact "Syed Asad Rahman" .
 
 <https://bio.tools/pathway_inspector> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203 ;
     sc:description "Web application helping researchers to find patterns of expression in complex RNAseq experiments." ;
@@ -351367,7 +368168,7 @@ Pathway Tools is a comprehensive systems biology software system that is associa
     biotools:primaryContact "Stefano Toppo" .
 
 <https://bio.tools/pathway_miner> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0203,
@@ -351389,7 +368190,7 @@ Pathway Tools is a comprehensive systems biology software system that is associa
     biotools:primaryContact "Ritu Pandey" .
 
 <https://bio.tools/pathway_parameter_advising> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2269,
@@ -351412,7 +368213,7 @@ Pathway parameter advising was written and tested using Python 3.6 and requires
     sc:url "https://github.com/gitter-lab/pathway-parameter-advising" .
 
 <https://bio.tools/pathway_projector> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2259 ;
@@ -351428,7 +368229,7 @@ Pathway parameter advising was written and tested using Python 3.6 and requires
     biotools:primaryContact "Nobuaki Kono" .
 
 <https://bio.tools/pathway_tools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -351445,7 +368246,7 @@ Pathway parameter advising was written and tested using Python 3.6 and requires
     sc:url "http://bioinformatics.ai.sri.com/ptools/" .
 
 <https://bio.tools/pathwaylab> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0202,
         edam:topic_0602,
@@ -351460,7 +368261,7 @@ Pathway parameter advising was written and tested using Python 3.6 and requires
     sc:url "http://www.garuda-alliance.org/" .
 
 <https://bio.tools/pathwaymatrix> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0602,
@@ -351477,7 +368278,7 @@ Pathway parameter advising was written and tested using Python 3.6 and requires
     biotools:primaryContact "Angus Graeme Forbes" .
 
 <https://bio.tools/pathwaypca> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0203,
         edam:topic_0602,
@@ -351498,7 +368299,7 @@ With the advance in high-throughput technology for molecular assays, multi-omics
     sc:url "https://gabrielodom.github.io/pathwayPCA/" .
 
 <https://bio.tools/pathwaysplice> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3168,
@@ -351521,7 +368322,7 @@ With the advance in high-throughput technology for molecular assays, multi-omics
     biotools:primaryContact "Aimin Yan" .
 
 <https://bio.tools/pathwaysweb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2259,
@@ -351536,7 +368337,7 @@ With the advance in high-throughput technology for molecular assays, multi-omics
     biotools:primaryContact "Melott JM" .
 
 <https://bio.tools/patient_archive> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Workbench" ;
     sc:applicationSubCategory edam:topic_0625,
@@ -351564,7 +368365,7 @@ With the advance in high-throughput technology for molecular assays, multi-omics
     sc:url "http://patientarchive.org/#/home" .
 
 <https://bio.tools/patientmatcher> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Web API" ;
     sc:applicationSubCategory edam:topic_0625,
@@ -351578,7 +368379,7 @@ With the advance in high-throughput technology for molecular assays, multi-omics
     sc:url "https://github.com/Clinical-Genomics/patientMatcher" .
 
 <https://bio.tools/patman> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0622 ;
@@ -351598,7 +368399,7 @@ With the advance in high-throughput technology for molecular assays, multi-omics
         "Udo Stenzel" .
 
 <https://bio.tools/patmatch> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0654,
@@ -351617,10 +368418,9 @@ With the advance in high-throughput technology for molecular assays, multi-omics
 
 <https://bio.tools/patmatdb> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2886" ;
-            sc:name "Protein sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2886" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2886" ;
+            sc:name "Protein sequence record" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0160 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -351652,14 +368452,12 @@ With the advance in high-throughput technology for molecular assays, multi-omics
 
 <https://bio.tools/patmatmotifs> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:name "Sequence features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0160 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -351689,7 +368487,7 @@ With the advance in high-throughput technology for molecular assays, multi-omics
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/patmatmotifs.html" .
 
 <https://bio.tools/pato> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0622,
@@ -351707,7 +368505,7 @@ PATO is a R package designed to analyze pangenomes (set of genomes) intra or int
     sc:url "https://github.com/irycisBioinfo/PATO" .
 
 <https://bio.tools/patristic> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3053,
         edam:topic_3293,
@@ -351724,7 +368522,7 @@ PATO is a R package designed to analyze pangenomes (set of genomes) intra or int
     biotools:primaryContact "Fourment Mathieu" .
 
 <https://bio.tools/patrocles> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0204,
@@ -351748,7 +368546,7 @@ PATO is a R package designed to analyze pangenomes (set of genomes) intra or int
         "Denis Baurain" .
 
 <https://bio.tools/patroon> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_0780,
         edam:topic_3343,
@@ -351770,7 +368568,7 @@ This R package contains example to test and demonstrate the patRoon R package. T
     sc:url "https://rickhelmus.github.io/patRoon/index.html" .
 
 <https://bio.tools/patscanui> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_3473 ;
@@ -351784,7 +368582,7 @@ This R package contains example to test and demonstrate the patRoon R package. T
     sc:url "https://patscan.secondarymetabolites.org" .
 
 <https://bio.tools/patsearch> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0749,
@@ -351806,7 +368604,7 @@ This R package contains example to test and demonstrate the patRoon R package. T
     sc:url "http://itbtools.ba.itb.cnr.it/patsearch" .
 
 <https://bio.tools/pattern_clustering> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654 ;
     sc:description "Pattern clustering is a tool to cluster a set of DNA patterns onto smaller and more representative set of DNA patterns.Most pattern enumeration tools, such as POCO, report patterns overlapping. Therefore after discovering a set of statistically significant nucleotide patterns, it is useful to cluster the overlapping patterns into representative patterns." ;
@@ -351818,14 +368616,14 @@ This R package contains example to test and demonstrate the patRoon R package. T
 
 <https://bio.tools/patternexplorer> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ] ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1477" ;
+            sc:name "Protein structure" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0883" ;
-            sc:name "Structure" ;
-            sc:sameAs "http://edamontology.org/data_0883" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0883" ;
+            sc:encodingFormat "http://edamontology.org/format_2033" ;
+            sc:name "Structure" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0154,
@@ -351838,7 +368636,7 @@ This R package contains example to test and demonstrate the patRoon R package. T
         edam:operation_0250,
         edam:operation_0570 ;
     sc:isAccessibleForFree true ;
-    sc:name "PatternExplorer" ;
+    sc:name "PatternQuery" ;
     sc:operatingSystem "Linux",
         "Mac",
         "Windows" ;
@@ -351855,10 +368653,10 @@ This R package contains example to test and demonstrate the patRoon R package. T
 
 <https://bio.tools/patternlab> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3244" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Suite" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -351879,18 +368677,18 @@ This R package contains example to test and demonstrate the patRoon R package. T
 
 <https://bio.tools/patternquery> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0883" ;
-            sc:name "Structure" ;
-            sc:sameAs "http://edamontology.org/data_0883" ],
+            sc:additionalType "http://edamontology.org/data_1127" ;
+            sc:encodingFormat "http://edamontology.org/format_1477" ;
+            sc:name "PDB ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1127" ;
-            sc:name "PDB ID" ;
-            sc:sameAs "http://edamontology.org/data_1127" ] ;
+            sc:additionalType "http://edamontology.org/data_0883" ;
+            sc:encodingFormat "http://edamontology.org/format_1477" ;
+            sc:name "Structure" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0883" ;
-            sc:name "Structure" ;
-            sc:sameAs "http://edamontology.org/data_0883" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0883" ;
+            sc:encodingFormat "http://edamontology.org/format_2033" ;
+            sc:name "Structure" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0081,
@@ -351923,8 +368721,26 @@ This R package contains example to test and demonstrate the patRoon R package. T
         "Lukáš Pravda",
         "Primary Contact" .
 
+<https://bio.tools/paup> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Desktop application" ;
+    sc:applicationSubCategory edam:topic_0084 ;
+    sc:citation <https://doi.org/10.1002/0471250953.bi0604s00>,
+        "pubmed:18428704" ;
+    sc:description "PAUP* (Phylogenetic Analysis Using Parsimony *and other methods) is a program for phylogenetic analysis using parsimony, maximum likelihood, and distance methods" ;
+    sc:isAccessibleForFree true ;
+    sc:license "Other" ;
+    sc:name "paup" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <http://evomics.org/resources/software/molecular-evolution-software/paup/>,
+        <http://phylosolutions.com/paup-documentation/paupmanual.pdf>,
+        <https://en.wikipedia.org/wiki/PAUP*> ;
+    sc:url "https://paup.phylosolutions.com" .
+
 <https://bio.tools/pave> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3063,
         edam:topic_3361,
         edam:topic_3474,
@@ -351940,7 +368756,7 @@ Pattern Attention Model with Value Embedding (PAVE).""" ;
     sc:url "https://github.com/yinchangchang/PAVE" .
 
 <https://bio.tools/pavian> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_3174 ;
@@ -351957,7 +368773,7 @@ Pattern Attention Model with Value Embedding (PAVE).""" ;
     sc:url "https://ccb.jhu.edu/software/pavian/" .
 
 <https://bio.tools/pawer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0203,
         edam:topic_0632,
@@ -351974,7 +368790,7 @@ Pattern Attention Model with Value Embedding (PAVE).""" ;
     sc:url "https://biit.cs.ut.ee/pawer" .
 
 <https://bio.tools/pax2graphml> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0204,
@@ -351998,7 +368814,7 @@ Pattern Attention Model with Value Embedding (PAVE).""" ;
     sc:url "https://pax2graphml.genouest.org" .
 
 <https://bio.tools/paxdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0621 ;
     sc:description "PaxDb contains estimated abundance values for a large number of proteins in several different species. Furthermore, it contains information about inter-species variation of protein abundances." ;
@@ -352012,7 +368828,7 @@ Pattern Attention Model with Value Embedding (PAVE).""" ;
     biotools:primaryContact "Milan Simonovic" .
 
 <https://bio.tools/paxdb-parser> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_2229 ;
@@ -352028,7 +368844,7 @@ Pattern Attention Model with Value Embedding (PAVE).""" ;
     biotools:primaryContact "Maya Galili" .
 
 <https://bio.tools/paxtools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2259 ;
@@ -352045,14 +368861,14 @@ Pattern Attention Model with Value Embedding (PAVE).""" ;
 
 <https://bio.tools/paxtoolsr> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ] ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:encodingFormat "http://edamontology.org/format_3156" ;
+            sc:name "Pathway or network" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:encodingFormat "http://edamontology.org/format_3619" ;
+            sc:name "Pathway or network" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0602,
@@ -352077,7 +368893,7 @@ Pattern Attention Model with Value Embedding (PAVE).""" ;
     biotools:primaryContact "Augustin Luna" .
 
 <https://bio.tools/pazar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0204,
@@ -352096,7 +368912,7 @@ Pattern Attention Model with Value Embedding (PAVE).""" ;
     sc:url "http://www.pazar.info/" .
 
 <https://bio.tools/pb-net> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
         edam:topic_3292,
@@ -352118,7 +368934,7 @@ The data used for test is stored in test_input.pkl as a list of peak instances,
     sc:url "https://github.com/miaecle/PB-net" .
 
 <https://bio.tools/pbap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2885,
         edam:topic_3053,
@@ -352132,7 +368948,7 @@ The data used for test is stored in test_input.pkl as a list of peak instances,
     sc:url "http://faculty.washington.edu/wijsman/software.shtml" .
 
 <https://bio.tools/pbase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0078,
@@ -352153,7 +368969,7 @@ The data used for test is stored in test_input.pkl as a list of peak instances,
         "Sebastian Gibb" .
 
 <https://bio.tools/pbat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3517 ;
     sc:citation "pmcid:PMC3525120",
@@ -352169,7 +368985,7 @@ The data used for test is stored in test_input.pkl as a list of peak instances,
     sc:url "https://www.hsph.harvard.edu/pbat" .
 
 <https://bio.tools/pbcmc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -352190,7 +369006,7 @@ The data used for test is stored in test_input.pkl as a list of peak instances,
     biotools:primaryContact "Cristobal Fresno" .
 
 <https://bio.tools/pbe> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0081,
@@ -352209,7 +369025,7 @@ The data used for test is stored in test_input.pkl as a list of peak instances,
     sc:url "http://bioinformatics.univ-reunion.fr/PBE/" .
 
 <https://bio.tools/pbeq-solver> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0166,
@@ -352232,14 +369048,14 @@ The data used for test is stored in test_input.pkl as a list of peak instances,
 
 <https://bio.tools/pbg-ld> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0842" ;
-            sc:name "Identifier" ;
-            sc:sameAs "http://edamontology.org/data_0842" ] ;
+            sc:additionalType "http://edamontology.org/data_0842" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Identifier" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2080" ;
-            sc:name "Database search results" ;
-            sc:sameAs "http://edamontology.org/data_2080" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2080" ;
+            sc:encodingFormat "http://edamontology.org/format_2376" ;
+            sc:name "Database search results" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "SPARQL endpoint",
         "Web API",
         "Web application" ;
@@ -352268,7 +369084,7 @@ The data used for test is stored in test_input.pkl as a list of peak instances,
     biotools:primaryContact <https://orcid.org/0000-0003-1711-7961> .
 
 <https://bio.tools/pbgi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0769,
@@ -352285,7 +369101,7 @@ The data used for test is stored in test_input.pkl as a list of peak instances,
     sc:url "https://github.com/lyotvincent/PBGI" .
 
 <https://bio.tools/pbil> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0082,
@@ -352306,8 +369122,29 @@ The data used for test is stored in test_input.pkl as a list of peak instances,
     biotools:primaryContact "Gilbert DELEAGE",
         "Raphael TERREUX" .
 
+<https://bio.tools/pbine> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_2269,
+        edam:topic_2885,
+        edam:topic_3517 ;
+    sc:citation <https://doi.org/10.1016/J.CSBJ.2022.06.055>,
+        "pmcid:PMC9283883",
+        "pubmed:35860413" ;
+    sc:description "Evaluating statistical significance in a meta analysis by using numerical integration." ;
+    sc:featureList edam:operation_3196,
+        edam:operation_3435,
+        edam:operation_3659 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "Pbine" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/Yinchun-Lin/Pbine" .
+
 <https://bio.tools/pblat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3170,
@@ -352327,7 +369164,7 @@ The data used for test is stored in test_input.pkl as a list of peak instances,
     biotools:primaryContact "M. Wang" .
 
 <https://bio.tools/pbm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3518 ;
     sc:citation <https://doi.org/10.1038/nprot.2008.195>,
@@ -352342,14 +369179,14 @@ The data used for test is stored in test_input.pkl as a list of peak instances,
     sc:url "http://thebrain.bwh.harvard.edu/PBMAnalysisSuite/index.html" .
 
 <https://bio.tools/pbmm2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "pbmm2 is a SMRT C++ wrapper for minimap2's C API. Its purpose is to support native PacBio in- and output, provide sets of recommended parameters, generate sorted output on-the-fly, and postprocess alignments. Sorted output can be used directly for polishing using GenomicConsensus, if BAM has been used as input to pbmm2. Benchmarks show that pbmm2 outperforms BLASR in sequence identity, number of mapped bases, and especially runtime. pbmm2 is the official replacement for BLASR." ;
     sc:name "pbmm2" ;
     sc:softwareVersion "1.4.0" ;
     sc:url "https://github.com/PacificBiosciences/pbmm2" .
 
 <https://bio.tools/pboost> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0602,
@@ -352367,7 +369204,7 @@ The data used for test is stored in test_input.pkl as a list of peak instances,
         "Weichuan Yu" .
 
 <https://bio.tools/pbpk-model-simbiology> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3375 ;
     sc:description "Provides a PBPK and a Renin-Angiotensin system model for SimBiology" ;
@@ -352381,7 +369218,7 @@ The data used for test is stored in test_input.pkl as a list of peak instances,
     biotools:primaryContact "Sven Mesecke" .
 
 <https://bio.tools/pbrit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0089,
@@ -352406,7 +369243,7 @@ pBRIT stands for priortization of candidate genes using Bayesian Ridge Regressio
     sc:url "http://biomina.be/apps/pbrit/" .
 
 <https://bio.tools/pbrowse> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0092,
@@ -352426,7 +369263,7 @@ pBRIT stands for priortization of candidate genes using Bayesian Ridge Regressio
     biotools:primaryContact "Support" .
 
 <https://bio.tools/pbsim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0196,
@@ -352441,7 +369278,7 @@ pBRIT stands for priortization of candidate genes using Bayesian Ridge Regressio
     sc:url "https://code.google.com/p/pbsim/" .
 
 <https://bio.tools/pbsim2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_3168,
         edam:topic_3314 ;
@@ -352459,7 +369296,7 @@ When a coverage depth is 100x and a length of reference sequence is about 10M, P
     sc:url "https://github.com/yukiteruono/pbsim2" .
 
 <https://bio.tools/pbsp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0154,
@@ -352481,7 +369318,7 @@ When a coverage depth is 100x and a length of reference sequence is about 10M, P
     sc:url "http://web.pkusz.edu.cn/wu/PBSP/" .
 
 <https://bio.tools/pbsword> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3125,
@@ -352498,7 +369335,7 @@ When a coverage depth is 100x and a length of reference sequence is about 10M, P
     sc:url "http://pbs.rnet.missouri.edu" .
 
 <https://bio.tools/pbwt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0622,
@@ -352513,14 +369350,14 @@ When a coverage depth is 100x and a length of reference sequence is about 10M, P
 
 <https://bio.tools/pbxplore> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ] ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein structure" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_2200" ;
+            sc:name "Sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0176,
         edam:topic_0736,
@@ -352544,7 +369381,7 @@ Protein Blocks are structural prototypes defined by de Brevern et al. (Proteins,
     sc:url "https://github.com/pierrepo/PBxplore" .
 
 <https://bio.tools/pc-select> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3053,
@@ -352560,7 +369397,7 @@ Protein Blocks are structural prototypes defined by de Brevern et al. (Proteins,
     biotools:primaryContact "Bonnie Berger" .
 
 <https://bio.tools/pc2p> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0128,
@@ -352578,8 +369415,31 @@ There is an implementation with Jupiter, in which I put some examples. In these
     sc:name "PC2P" ;
     sc:url "https://github.com/SaraOmranian/PC2P" .
 
+<https://bio.tools/pca-mutpred> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0152,
+        edam:topic_0154,
+        edam:topic_0199 ;
+    sc:citation <https://doi.org/10.1016/J.JMB.2022.167526>,
+        "pubmed:35662456" ;
+    sc:description "Prediction of Binding Free Energy Change Upon Missense Mutation in Protein-carbohydrate Complexes." ;
+    sc:featureList edam:operation_0475,
+        edam:operation_2488,
+        edam:operation_3659 ;
+    sc:isAccessibleForFree true ;
+    sc:name "PCA-MutPred" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://web.iitm.ac.in/bioinfo2/pcamutpred" .
+
 <https://bio.tools/pcaanalyser> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_2640,
@@ -352596,7 +369456,7 @@ There is an implementation with Jupiter, in which I put some examples. In these
     biotools:primaryContact "Vicky M. Avery" .
 
 <https://bio.tools/pcadapt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3053,
@@ -352613,7 +369473,7 @@ There is an implementation with Jupiter, in which I put some examples. In these
     biotools:primaryContact "Michael Blum" .
 
 <https://bio.tools/pcadapt2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0625,
         edam:topic_3299 ;
@@ -352634,7 +369494,7 @@ pcadapt has been developed to detect genetic markers involved in biological adap
     sc:url "https://bcm-uga.github.io/pcadapt/articles/pcadapt.html" .
 
 <https://bio.tools/pcadb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
@@ -352659,7 +369519,7 @@ pcadapt has been developed to detect genetic markers involved in biological adap
     sc:url "http://bioinfo.jialab-ucr.org/PCaDB/" .
 
 <https://bio.tools/pcadmix> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_2269,
@@ -352676,7 +369536,7 @@ pcadapt has been developed to detect genetic markers involved in biological adap
     sc:url "https://sites.google.com/site/pcadmix/home" .
 
 <https://bio.tools/pcaexplorer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -352697,7 +369557,7 @@ pcadapt has been developed to detect genetic markers involved in biological adap
     biotools:primaryContact "Federico Marini" .
 
 <https://bio.tools/pcagopromoter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0654,
@@ -352719,7 +369579,7 @@ pcadapt has been developed to detect genetic markers involved in biological adap
     biotools:primaryContact "Morten Hansen" .
 
 <https://bio.tools/pcaj> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_2885,
@@ -352737,7 +369597,7 @@ pcadapt has been developed to detect genetic markers involved in biological adap
     sc:url "http://kumasakanatsuhiko.jp/projects/pcaj/" .
 
 <https://bio.tools/pcalistdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0749,
         edam:topic_2640,
@@ -352754,7 +369614,7 @@ The ultimate goal is to accelerate the translation of LWAS discoveries into resu
     sc:url "http://www.sysbio.org.cn/pcalistdb/" .
 
 <https://bio.tools/pcamatchr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0625,
         edam:topic_3517,
@@ -352775,22 +369635,22 @@ Matches cases to controls based on genotype principal components (PC). In order
 
 <https://bio.tools/pcamethods> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Report" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1772" ;
-            sc:name "Score" ;
-            sc:sameAs "http://edamontology.org/data_1772" ],
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Plot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ],
+            sc:additionalType "http://edamontology.org/data_1772" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Score" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -352811,7 +369671,7 @@ Matches cases to controls based on genotype principal components (PC). In order
     biotools:primaryContact "Henning Redestig" .
 
 <https://bio.tools/pcan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0602,
@@ -352835,7 +369695,7 @@ Matches cases to controls based on genotype principal components (PC). In order
         <http://orcid.org/0000-0002-3571-0374> .
 
 <https://bio.tools/pcapred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0152,
         edam:topic_0154,
         edam:topic_0749,
@@ -352854,7 +369714,7 @@ Protein-Carbohydrate complex binding Affinity Prediction.""" ;
     sc:url "https://web.iitm.ac.in/bioinfo2/pcapred/" .
 
 <https://bio.tools/pcareduce> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3170,
@@ -352872,18 +369732,15 @@ Protein-Carbohydrate complex binding Affinity Prediction.""" ;
 
 <https://bio.tools/pcasuite> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0883" ;
-            sc:name "Structure" ;
-            sc:sameAs "http://edamontology.org/data_0883" ] ;
+            sc:additionalType "http://edamontology.org/data_0883" ;
+            sc:name "Structure" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ],
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:name "Report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0883" ;
-            sc:name "Structure" ;
-            sc:sameAs "http://edamontology.org/data_0883" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0883" ;
+            sc:name "Structure" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0176,
         edam:topic_2269 ;
@@ -352902,7 +369759,7 @@ Protein-Carbohydrate complex binding Affinity Prediction.""" ;
         "Y. Sharma" .
 
 <https://bio.tools/pcat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3170,
         edam:topic_3360,
@@ -352914,7 +369771,7 @@ Protein-Carbohydrate complex binding Affinity Prediction.""" ;
     sc:url "http://pcat.zhenglab.info" .
 
 <https://bio.tools/pcatag> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_2885,
@@ -352932,7 +369789,7 @@ Protein-Carbohydrate complex binding Affinity Prediction.""" ;
     sc:url "http://www-genepi.med.utah.edu/PCAtag/index.html" .
 
 <https://bio.tools/pcdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -352954,7 +369811,7 @@ Protein-Carbohydrate complex binding Affinity Prediction.""" ;
     biotools:primaryContact "Gustavo D. Parisi" .
 
 <https://bio.tools/pcddb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0736,
@@ -352975,7 +369832,7 @@ Protein-Carbohydrate complex binding Affinity Prediction.""" ;
     biotools:primaryContact "PCDDB Support" .
 
 <https://bio.tools/pce> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0166 ;
@@ -352989,7 +369846,7 @@ Protein-Carbohydrate complex binding Affinity Prediction.""" ;
     sc:url "http://bioserv.rpbs.jussieu.fr/Help/PCE.html" .
 
 <https://bio.tools/pcetk> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0123,
         edam:topic_2814 ;
@@ -353006,7 +369863,7 @@ Protein-Carbohydrate complex binding Affinity Prediction.""" ;
     biotools:primaryContact "Mikolaj Feliks" .
 
 <https://bio.tools/pcfamily> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0157,
@@ -353028,7 +369885,7 @@ Protein-Carbohydrate complex binding Affinity Prediction.""" ;
     biotools:primaryContact "PCFamily Support" .
 
 <https://bio.tools/pcfun> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0121,
@@ -353046,28 +369903,89 @@ Fast and accurate tool for the functional annotation of protein complex queries
     sc:name "PCfun" ;
     sc:url "https://github.com/sharmavaruns/PCfun" .
 
+<https://bio.tools/pcga> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0625,
+        edam:topic_3170,
+        edam:topic_3295,
+        edam:topic_3308,
+        edam:topic_3517 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAC425>,
+        "pmcid:PMC9252750",
+        "pubmed:35639771" ;
+    sc:description "A comprehensive web server for phenotype-cell-gene association analysis." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_2421,
+        edam:operation_3659 ;
+    sc:isAccessibleForFree true ;
+    sc:name "PCGA" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://pmglab.top/pcga" .
+
 <https://bio.tools/pcgr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2526" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Text data" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence variations" ] ;
+    bsc:output [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Report" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Report" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence variations" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_3464" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
-    sc:applicationSubCategory edam:topic_0199,
+    sc:applicationSubCategory edam:topic_0085,
+        edam:topic_0092,
+        edam:topic_0199,
         edam:topic_0622,
         edam:topic_2640,
         edam:topic_3175,
-        edam:topic_3374 ;
-    sc:citation <https://doi.org/10.1093/bioinformatics/btx817> ;
-    sc:description "Stand-alone software package for functional annotation and translation of individual cancer genomes for precision oncology. It interprets both somatic SNVs/InDels and copy number aberrations." ;
-    sc:featureList edam:operation_0362,
-        edam:operation_3197 ;
+        edam:topic_3374,
+        edam:topic_3577 ;
+    sc:author <https://orcid.org/0000-0001-8468-2050> ;
+    sc:citation <https://doi.org/10.1093/bioinformatics/btx817>,
+        "pmcid:PMC5946881",
+        "pubmed:29272339" ;
+    sc:contributor <https://orcid.org/0000-0002-7502-7545> ;
+    sc:description "The Personal Cancer Genome Reporter (PCGR) is a stand-alone software package for translation of individual tumor genomes for precision cancer medicine. PCGR interprets primarily somatic SNVs/InDels and copy number aberrations. The software extends basic gene and variant annotations from the Ensembl's Variant Effect Predictor (VEP) with oncology-relevant, up-to-date annotations, and produces interactive HTML reports intended for clinical interpretation." ;
+    sc:featureList edam:operation_0331,
+        edam:operation_3225,
+        edam:operation_3226,
+        edam:operation_3672 ;
+    sc:isAccessibleForFree true ;
     sc:license "MIT" ;
-    sc:name "PCGR" ;
+    sc:name "PCGR - Personal Cancer Genome Reporter" ;
     sc:operatingSystem "Linux",
         "Mac" ;
-    sc:softwareHelp <https://github.com/sigven/pcgr> ;
+    sc:softwareHelp <https://sigven.github.io/pcgr>,
+        <https://sigven.github.io/pcgr/articles/CHANGELOG.html>,
+        <https://sigven.github.io/pcgr/articles/installation.html>,
+        <https://sigven.github.io/pcgr/articles/running.html#all-options>,
+        <https://sigven.github.io/pcgr/authors.html#citation> ;
+    sc:softwareVersion "1.0.2" ;
     sc:url "https://github.com/sigven/pcgr" ;
-    biotools:primaryContact "Sigve Nakken" .
+    biotools:primaryContact <https://orcid.org/0000-0001-8468-2050> .
 
 <https://bio.tools/pchat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3053,
@@ -353085,14 +370003,14 @@ Fast and accurate tool for the functional annotation of protein complex queries
 
 <https://bio.tools/pchopper> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -353102,7 +370020,7 @@ Fast and accurate tool for the functional annotation of protein complex queries
     sc:url "http://pchopper.lifesci.dundee.ac.uk" .
 
 <https://bio.tools/pci> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_0654,
@@ -353121,7 +370039,7 @@ Fast and accurate tool for the functional annotation of protein complex queries
     biotools:primaryContact "John L. Spouge" .
 
 <https://bio.tools/pci-ss> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3542 ;
     sc:citation <https://doi.org/10.1186/1471-2105-10-222> ;
@@ -353136,7 +370054,7 @@ Fast and accurate tool for the functional annotation of protein complex queries
     sc:url "http://bioinf.sce.carleton.ca/PCISS/start.php" .
 
 <https://bio.tools/pcip-seq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0749,
         edam:topic_0781,
@@ -353157,7 +370075,7 @@ Fast and accurate tool for the functional annotation of protein complex queries
         "Keith Durkin" .
 
 <https://bio.tools/pcirc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0659,
@@ -353177,7 +370095,7 @@ Fast and accurate tool for the functional annotation of protein complex queries
     sc:url "https://github.com/Lilab-SNNU/Pcirc" .
 
 <https://bio.tools/pcircrna_finder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0659,
@@ -353194,7 +370112,7 @@ Fast and accurate tool for the functional annotation of protein complex queries
         "Longjiang Fan" .
 
 <https://bio.tools/pcit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0602 ;
     sc:author "Nathan S. Watson-Haigh" ;
@@ -353213,10 +370131,9 @@ Fast and accurate tool for the functional annotation of protein complex queries
     biotools:primaryContact "Nathan S. Watson-Haigh" .
 
 <https://bio.tools/pcleavage> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
-        edam:topic_2830,
         edam:topic_3474,
         edam:topic_3510,
         edam:topic_3534 ;
@@ -353231,11 +370148,11 @@ Fast and accurate tool for the functional annotation of protein complex queries
         "Mac",
         "Windows" ;
     sc:softwareHelp <http://crdd.osdd.net/raghava/pcleavage/info.html> ;
-    sc:url "http://www.imtech.res.in/raghava/pcleavage/" ;
+    sc:url "http://webs.iiitd.edu.in/raghava/pcleavage/" ;
     biotools:primaryContact "GPS Raghava" .
 
 <https://bio.tools/pclogit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3053 ;
     sc:description "R package for penalized conditional/unconditional logistic regression using a network-based peanlty for matched/unmatched case-control data with grouped or graph-constrained variables. The algorithm is efficient for fitting the regularization path and for providing selection probabilities of each predictor for the anaylsis of high-dimensional matched/unmatched case-control data. It uses cyclical coordinate descent in a pathwise fashion." ;
@@ -353248,8 +370165,28 @@ Fast and accurate tool for the functional annotation of protein complex queries
     sc:softwareVersion "0.1" ;
     sc:url "http://www.columbia.edu/~sw2206/softwares.htm" .
 
+<https://bio.tools/pclouds> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0157 ;
+    sc:citation <https://doi.org/10.1016/j.ab.2008.05.015>,
+        <https://doi.org/10.1371/journal.pgen.1002384>,
+        "pmcid:PMC2533575",
+        "pmcid:PMC3228813",
+        "pubmed:18541131",
+        "pubmed:22144907" ;
+    sc:description "The P-clouds package is designed to identify repeat structure in large eukaryotic genomes using oligonucleotide counts." ;
+    sc:featureList edam:operation_0237 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "pclouds" ;
+    sc:operatingSystem "Linux",
+        "Mac" ;
+    sc:softwareHelp <http://www.evolutionarygenomics.com/ProgramsData/PClouds/P-Clouds_v0.9a_doc.pdf> ;
+    sc:url "http://www.evolutionarygenomics.com/ProgramsData/PClouds/PClouds.html" .
+
 <https://bio.tools/pclust> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0092,
@@ -353267,8 +370204,67 @@ Fast and accurate tool for the functional annotation of protein complex queries
     sc:url "http://prodata.swmed.edu/pclust/server.cgi" ;
     biotools:primaryContact "Support" .
 
+<https://bio.tools/pcmdb> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_0780,
+        edam:topic_2229,
+        edam:topic_3170,
+        edam:topic_3308 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAB949>,
+        "pmcid:PMC8728192",
+        "pubmed:34718712" ;
+    sc:description "A curated and comprehensive resource of plant cell markers." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_2421,
+        edam:operation_3663 ;
+    sc:isAccessibleForFree true ;
+    sc:name "PCMDB" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://www.tobaccodb.org/pcmdb/" .
+
+<https://bio.tools/pcmdb_pancreatic_cancer_methylation_database> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:citation <https://doi.org/10.1038/srep04197>,
+        "pmcid:PMC3935225",
+        "pubmed:24569397" ;
+    sc:description "PCMdb is a database of methylated genes found in pancreatic cancer cell lines and tissues." ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "pcmdb :  Pancreatic Cancer Methylation Database" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/pcmdb/index.php> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/pcmdb/index.php" .
+
+<https://bio.tools/pcn-miner> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0128,
+        edam:topic_0154,
+        edam:topic_2814 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC450>,
+        "pubmed:35799364" ;
+    sc:description "An open-source extensible tool for the Analysis of Protein Contact Networks." ;
+    sc:featureList edam:operation_0272,
+        edam:operation_0474,
+        edam:operation_3092 ;
+    sc:isAccessibleForFree true ;
+    sc:license "CC-BY-1.0" ;
+    sc:name "PCN-Miner" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/hguzzi/ProteinContactNetworks" .
+
 <https://bio.tools/pcnadeep> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_2229,
@@ -353286,7 +370282,7 @@ Fast and accurate tool for the functional annotation of protein complex queries
     sc:url "https://github.com/chan-labsite/PCNAdeep" .
 
 <https://bio.tools/pcnsl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3305,
@@ -353307,7 +370303,7 @@ Fast and accurate tool for the functional annotation of protein complex queries
     sc:url "http://www.pcnsl-survivalprediction.cn" .
 
 <https://bio.tools/pcoils> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2814 ;
     sc:citation "pubmed:16870472" ;
@@ -353320,7 +370316,7 @@ Fast and accurate tool for the functional annotation of protein complex queries
     sc:url "https://toolkit.tuebingen.mpg.de/#/tools/pcoils" .
 
 <https://bio.tools/pcons> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0081,
@@ -353345,7 +370341,7 @@ Fast and accurate tool for the functional annotation of protein complex queries
     biotools:primaryContact "Elofsson Lab" .
 
 <https://bio.tools/pconsfold> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0130,
@@ -353362,7 +370358,7 @@ Fast and accurate tool for the functional annotation of protein complex queries
     sc:url "https://github.com/ElofssonLab/pcons-fold" .
 
 <https://bio.tools/pcoskb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0634,
         edam:topic_2885,
@@ -353389,7 +370385,7 @@ The Help page provides information on how to navigate the database and use its v
     sc:url "http://www.pcoskb.bicnirrh.res.in/" .
 
 <https://bio.tools/pcot2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0204,
@@ -353409,7 +370405,7 @@ The Help page provides information on how to navigate the database and use its v
     biotools:primaryContact "Sarah Song" .
 
 <https://bio.tools/pcp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_3307 ;
     sc:citation "pubmed:25913176" ;
@@ -353424,7 +370420,7 @@ The Help page provides information on how to navigate the database and use its v
     sc:url "https://sites.google.com/site/proteincomplexprediction/" .
 
 <https://bio.tools/pcpheno> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0078,
@@ -353443,8 +370439,22 @@ The Help page provides information on how to navigate the database and use its v
     sc:url "http://bioconductor.org/packages/release/bioc/html/PCpheno.html" ;
     biotools:primaryContact "Nolwenn Le Meur" .
 
+<https://bio.tools/pcpred> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:description """PCPred: Pneumonia and Covid-19 Radiography Lung Image
+Multi-Class Classification""" ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "pcpred" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/pcpred/index.html> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/pcpred/index.html" .
+
 <https://bio.tools/pcprophet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -353462,7 +370472,7 @@ The Help page provides information on how to navigate the database and use its v
     sc:url "https://github.com/anfoss/PCprophet" .
 
 <https://bio.tools/pcps> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
         edam:topic_0804,
@@ -353481,7 +370491,7 @@ Sequence Manipulation & Analysis.""" ;
     sc:url "http://imed.med.ucm.es/Tools/pcps/" .
 
 <https://bio.tools/pcqc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2229,
         edam:topic_3170 ;
@@ -353502,7 +370512,7 @@ The pcqc package was developed using,.""" ;
     sc:url "http://github.com/RoussosLab/pcqc" .
 
 <https://bio.tools/pcr_essentials> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3512 ;
     sc:description """PCR Essentials
@@ -353514,14 +370524,14 @@ Find product information on Taq polymerases, dNTP, gels and stains, RT-PCR produ
 
 <https://bio.tools/pcrclipreads> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1050" ;
-            sc:name "File name" ;
-            sc:sameAs "http://edamontology.org/data_1050" ] ;
+            sc:additionalType "http://edamontology.org/data_1050" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "File name" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1050" ;
-            sc:name "File name" ;
-            sc:sameAs "http://edamontology.org/data_1050" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1050" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "File name" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3519 ;
@@ -353544,7 +370554,7 @@ Find product information on Taq polymerases, dNTP, gels and stains, RT-PCR produ
     biotools:primaryContact "Pierre Lindenbaum" .
 
 <https://bio.tools/pcredux> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Suite" ;
     sc:applicationSubCategory edam:topic_0077,
@@ -353564,7 +370574,7 @@ Find product information on Taq polymerases, dNTP, gels and stains, RT-PCR produ
     biotools:primaryContact <https://orcid.org/0000-0002-1441-6512> .
 
 <https://bio.tools/pcrefficiency> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3314,
@@ -353582,7 +370592,7 @@ Find product information on Taq polymerases, dNTP, gels and stains, RT-PCR produ
     biotools:primaryContact "Giuseppe Cardillo" .
 
 <https://bio.tools/pcrpi-db> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0128,
@@ -353602,7 +370612,7 @@ Find product information on Taq polymerases, dNTP, gels and stains, RT-PCR produ
     biotools:primaryContact "Narcis Fernandez-Fuentes" .
 
 <https://bio.tools/pcrsetup> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0632,
         edam:topic_0821 ;
@@ -353616,7 +370626,7 @@ Find product information on Taq polymerases, dNTP, gels and stains, RT-PCR produ
     sc:url "http://primerdigital.com/tools/ReactionMixture.html" .
 
 <https://bio.tools/pcrtiler> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0077,
@@ -353643,7 +370653,7 @@ Find product information on Taq polymerases, dNTP, gels and stains, RT-PCR produ
         "alain.gervais@USherbrooke.ca" .
 
 <https://bio.tools/pcs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0659 ;
@@ -353659,7 +370669,7 @@ Find product information on Taq polymerases, dNTP, gels and stains, RT-PCR produ
     biotools:primaryContact "Jin Gu" .
 
 <https://bio.tools/pcscs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654,
@@ -353679,14 +370689,14 @@ Find product information on Taq polymerases, dNTP, gels and stains, RT-PCR produ
 
 <https://bio.tools/pcsf> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ] ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:encodingFormat "http://edamontology.org/format_3617" ;
+            sc:name "Pathway or network" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:encodingFormat "http://edamontology.org/format_3617" ;
+            sc:name "Pathway or network" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_1775 ;
@@ -353706,7 +370716,7 @@ Find product information on Taq polymerases, dNTP, gels and stains, RT-PCR produ
     biotools:primaryContact "Murodzhon Akhmedov" .
 
 <https://bio.tools/pcxn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -353724,7 +370734,7 @@ Find product information on Taq polymerases, dNTP, gels and stains, RT-PCR produ
     biotools:primaryContact "Winston Hide" .
 
 <https://bio.tools/pcxn_bioconductor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3361 ;
     sc:description "Discover the correlated pathways/gene sets of a single pathway/gene set or discover correlation relationships among multiple pathways/gene sets. Draw a heatmap or create a network of your query and extract members of each pathway/gene set found in the available collections." ;
@@ -353741,7 +370751,7 @@ Find product information on Taq polymerases, dNTP, gels and stains, RT-PCR produ
     biotools:primaryContact "Sokratis Kariotis" .
 
 <https://bio.tools/pcysmod> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0601,
@@ -353764,7 +370774,7 @@ Find product information on Taq polymerases, dNTP, gels and stains, RT-PCR produ
         "Xinjiao Gao" .
 
 <https://bio.tools/pd-cr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3172,
@@ -353782,7 +370792,7 @@ Here we provide a python code for the "Primal-Dual for Classification with Rejec
     sc:url "https://github.com/tirolab/PD-CR" .
 
 <https://bio.tools/pda> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0632,
@@ -353805,7 +370815,7 @@ Here we provide a python code for the "Primal-Dual for Classification with Rejec
         "Sonia Casillas" .
 
 <https://bio.tools/pdac-ann> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0203,
         edam:topic_3474,
@@ -353827,7 +370837,7 @@ The script runs a deep learning model (PDAC-ANN) to classify samples in normal o
     sc:url "https://github.com/freitasleandro/PDAC-ANN" .
 
 <https://bio.tools/pdart> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btl366> ;
@@ -353842,7 +370852,7 @@ The script runs a deep learning model (PDAC-ANN) to classify samples in normal o
     sc:url "http://cmb.bnu.edu.cn/pdart/" .
 
 <https://bio.tools/pdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web API" ;
     sc:applicationSubCategory edam:topic_0593,
@@ -353863,7 +370873,7 @@ The script runs a deep learning model (PDAC-ANN) to classify samples in normal o
     sc:url "http://www.pdb.org" .
 
 <https://bio.tools/pdb-2-pb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
         edam:topic_0154 ;
@@ -353877,7 +370887,7 @@ The script runs a deep learning model (PDAC-ANN) to classify samples in normal o
     sc:url "http://bioinfo.bdu.ac.in/pb3" .
 
 <https://bio.tools/pdb-blast> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0081 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btu773> ;
@@ -353894,7 +370904,7 @@ The script runs a deep learning model (PDAC-ANN) to classify samples in normal o
     biotools:primaryContact "Silvio C.E. Tosatto" .
 
 <https://bio.tools/pdb-explorer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2275,
         edam:topic_2814,
@@ -353909,12 +370919,39 @@ The script runs a deep learning model (PDAC-ANN) to classify samples in normal o
     sc:softwareHelp <http://www.cheminfo.org/pdbexplorer/help.html> ;
     sc:url "http://www.cheminfo.org/pdbexplorer/" .
 
+<https://bio.tools/pdb-nma-analysis> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2877" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein complex" ] ;
+    bsc:output [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1470" ;
+            sc:encodingFormat "http://edamontology.org/format_3877" ;
+            sc:name "C-alpha trace" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_1317,
+        edam:topic_2814,
+        edam:topic_3332 ;
+    sc:author <https://orcid.org/0000-0003-1881-5489> ;
+    sc:citation <https://doi.org/10.5281/zenodo.6888913> ;
+    sc:description "Rapidly perform normal mode analysis on PDB files using Tirion's simplified model." ;
+    sc:featureList edam:operation_2415,
+        edam:operation_3890 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "pdb-nma-analysis" ;
+    sc:operatingSystem "Linux",
+        "Mac" ;
+    sc:url "https://github.com/haschka/pdb-nma-analysis" ;
+    biotools:primaryContact <https://orcid.org/0000-0003-1881-5489> .
+
 <https://bio.tools/pdb-reader-matlab> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein structure" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_3070,
@@ -353932,26 +370969,24 @@ The script runs a deep learning model (PDAC-ANN) to classify samples in normal o
 
 <https://bio.tools/pdb-redo> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1127" ;
-            sc:name "PDB ID" ;
-            sc:sameAs "http://edamontology.org/data_1127" ] ;
+            sc:additionalType "http://edamontology.org/data_1127" ;
+            sc:name "PDB ID" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0937" ;
-            sc:name "Electron density map" ;
-            sc:sameAs "http://edamontology.org/data_0937" ],
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1454" ;
+            sc:name "Protein structure" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1539" ;
-            sc:name "Protein structural quality report" ;
-            sc:sameAs "http://edamontology.org/data_1539" ],
+            sc:additionalType "http://edamontology.org/data_1539" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Protein structural quality report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ],
+            sc:additionalType "http://edamontology.org/data_0937" ;
+            sc:name "Electron density map" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0883" ;
-            sc:name "Structure" ;
-            sc:sameAs "http://edamontology.org/data_0883" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0883" ;
+            sc:encodingFormat "http://edamontology.org/format_1477" ;
+            sc:name "Structure" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0081 ;
     sc:author <https://orcid.org/0000-0002-2323-2686>,
@@ -353985,7 +371020,7 @@ The script runs a deep learning model (PDAC-ANN) to classify samples in normal o
         <https://orcid.org/0000-0002-2323-2686> .
 
 <https://bio.tools/pdb-tools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_2275 ;
@@ -354000,7 +371035,7 @@ The script runs a deep learning model (PDAC-ANN) to classify samples in normal o
     sc:url "https://code.google.com/p/pdb-tools/" .
 
 <https://bio.tools/pdb-tools-web> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0769,
         edam:topic_1317,
@@ -354019,7 +371054,7 @@ A swiss army knife for manipulating and editing PDB files.""" ;
     sc:url "https://wenmr.science.uu.nl/pdbtools" .
 
 <https://bio.tools/pdb2cle> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2814 ;
     sc:description "PDB2CLE is a program that can turn a PDB file to a sequence of structural alphabets. In paricular, each structural alphabet is a discretized set of representatives of the local protein structure." ;
@@ -354030,7 +371065,7 @@ A swiss army knife for manipulating and editing PDB files.""" ;
     sc:url "http://ttic.uchicago.edu/~majianzhu/software.html" .
 
 <https://bio.tools/pdb2pqr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_1317,
         edam:topic_3307 ;
@@ -354047,7 +371082,7 @@ A swiss army knife for manipulating and editing PDB files.""" ;
     biotools:primaryContact "Steve Smith" .
 
 <https://bio.tools/pdb_extract> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_1317,
         edam:topic_2275 ;
@@ -354061,7 +371096,7 @@ A swiss army knife for manipulating and editing PDB files.""" ;
     sc:url "http://sw-tools.pdb.org/apps/PDB_EXTRACT/index.html" .
 
 <https://bio.tools/pdb_graph_api> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0091,
@@ -354077,7 +371112,7 @@ A swiss army knife for manipulating and editing PDB files.""" ;
     sc:url "https://gitlab.ebi.ac.uk/pdbe-kb/services/pdbe-graph-api" .
 
 <https://bio.tools/pdb_hydro> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0166,
@@ -354096,7 +371131,7 @@ A swiss army knife for manipulating and editing PDB files.""" ;
     biotools:primaryContact "Marc Delarue" .
 
 <https://bio.tools/pdb_redo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_1317,
@@ -354129,8 +371164,32 @@ As the models are consistently treated, they are more suited for large-scale ana
     sc:url "http://www.cmbi.ru.nl/pdb_redo" ;
     biotools:primaryContact <http://orcid.org/0000-0002-2323-2686> .
 
+<https://bio.tools/pdbbind> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_0108,
+        edam:topic_0154,
+        edam:topic_0623,
+        edam:topic_0821 ;
+    sc:citation <https://doi.org/10.1021/ACSOMEGA.2C02156>,
+        "pmcid:PMC9178723",
+        "pubmed:35694511" ;
+    sc:description "Public Data Set of Protein-Ligand Dissociation Kinetic Constants for Quantitative Structure-Kinetics Relationship Studies." ;
+    sc:featureList edam:operation_0477,
+        edam:operation_0482,
+        edam:operation_3431,
+        edam:operation_3799,
+        edam:operation_4009 ;
+    sc:isAccessibleForFree true ;
+    sc:name "PDBbind" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://www.pdbbind.org.cn/download.php" .
+
 <https://bio.tools/pdbe> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0593,
@@ -354149,8 +371208,36 @@ As the models are consistently treated, they are more suited for large-scale ana
     sc:url "http://www.ebi.ac.uk/pdbe/" ;
     biotools:primaryContact "Contact form" .
 
+<https://bio.tools/pdbe-kb> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0199,
+        edam:topic_2814,
+        edam:topic_3047,
+        edam:topic_3306 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAB988>,
+        "pmcid:PMC8728252",
+        "pubmed:34755867" ;
+    sc:description "Protein Data Bank in Europe - Knowledge Base" ;
+    sc:featureList edam:operation_0417,
+        edam:operation_1812,
+        edam:operation_3431,
+        edam:operation_3436,
+        edam:operation_4009 ;
+    sc:isAccessibleForFree true ;
+    sc:name "PDBe-KB" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://github.com/PDBe-KB/pdbe-kb-manual>,
+        <https://github.com/PDBe-KB/pdbe-kb-manual/wiki>,
+        <https://www.ebi.ac.uk/pdbe/download/api/docs> ;
+    sc:url "https://pdbe-kb.org" .
+
 <https://bio.tools/pdbecif> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2814,
@@ -354174,22 +371261,19 @@ As the models are consistently treated, they are more suited for large-scale ana
 
 <https://bio.tools/pdbefold> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ] ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein structure" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1537" ;
-            sc:name "Protein structure report" ;
-            sc:sameAs "http://edamontology.org/data_1537" ],
+            sc:additionalType "http://edamontology.org/data_1481" ;
+            sc:name "Structure alignment (protein)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2080" ;
-            sc:name "Database search results" ;
-            sc:sameAs "http://edamontology.org/data_2080" ],
+            sc:additionalType "http://edamontology.org/data_1537" ;
+            sc:name "Protein structure report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1481" ;
-            sc:name "Structure alignment (protein)" ;
-            sc:sameAs "http://edamontology.org/data_1481" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2080" ;
+            sc:name "Database search results" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_2814 ;
@@ -354213,14 +371297,12 @@ As the models are consistently treated, they are more suited for large-scale ana
 
 <https://bio.tools/pdbemotif> a sc:SoftwareApplication ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1566" ;
-            sc:name "Protein-ligand interaction report" ;
-            sc:sameAs "http://edamontology.org/data_1566" ],
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:name "Protein features" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1566" ;
+            sc:name "Protein-ligand interaction report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0166 ;
@@ -354240,18 +371322,16 @@ As the models are consistently treated, they are more suited for large-scale ana
 
 <https://bio.tools/pdbepisa> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ] ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein structure" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1537" ;
-            sc:name "Protein structure report" ;
-            sc:sameAs "http://edamontology.org/data_1537" ],
+            sc:additionalType "http://edamontology.org/data_0906" ;
+            sc:name "Protein interaction data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0906" ;
-            sc:name "Protein interaction data" ;
-            sc:sameAs "http://edamontology.org/data_0906" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1537" ;
+            sc:name "Protein structure report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0166 ;
@@ -354273,7 +371353,7 @@ As the models are consistently treated, they are more suited for large-scale ana
     biotools:primaryContact "Michael Wainwright" .
 
 <https://bio.tools/pdbest> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_2275,
         edam:topic_2814,
@@ -354295,22 +371375,18 @@ As the models are consistently treated, they are more suited for large-scale ana
 
 <https://bio.tools/pdbexplore> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:name "Protein sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0857" ;
-            sc:name "Sequence search results" ;
-            sc:sameAs "http://edamontology.org/data_0857" ],
+            sc:additionalType "http://edamontology.org/data_0857" ;
+            sc:name "Sequence search results" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1384" ;
-            sc:name "Sequence alignment (protein)" ;
-            sc:sameAs "http://edamontology.org/data_1384" ],
+            sc:additionalType "http://edamontology.org/data_1381" ;
+            sc:name "Sequence alignment (pair)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1381" ;
-            sc:name "Sequence alignment (pair)" ;
-            sc:sameAs "http://edamontology.org/data_1381" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1384" ;
+            sc:name "Sequence alignment (protein)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:author "Jose Dana",
@@ -354329,7 +371405,7 @@ As the models are consistently treated, they are more suited for large-scale ana
     biotools:primaryContact "Jose Dana" .
 
 <https://bio.tools/pdbextract> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_1317,
         edam:topic_2814 ;
@@ -354346,14 +371422,13 @@ As the models are consistently treated, they are more suited for large-scale ana
 
 <https://bio.tools/pdbfinder> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1127" ;
-            sc:name "PDB ID" ;
-            sc:sameAs "http://edamontology.org/data_1127" ] ;
+            sc:additionalType "http://edamontology.org/data_1127" ;
+            sc:name "PDB ID" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2085" ;
-            sc:name "Structure report" ;
-            sc:sameAs "http://edamontology.org/data_2085" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2085" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Structure report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078 ;
     sc:citation <https://doi.org/10.1093/nar/gku1028> ;
@@ -354367,7 +371442,7 @@ As the models are consistently treated, they are more suited for large-scale ana
     sc:url "http://swift.cmbi.ru.nl/gv/pdbfinder/" .
 
 <https://bio.tools/pdbfun> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0166 ;
     sc:citation <https://doi.org/10.1093/nar/gki499> ;
@@ -354379,7 +371454,7 @@ As the models are consistently treated, they are more suited for large-scale ana
     sc:url "http://pdbfun.uniroma2.it" .
 
 <https://bio.tools/pdbinder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:citation <https://doi.org/10.1186/1471-2105-13-S4-S17>,
         "pmcid:PMC3434446",
         "pubmed:22536963" ;
@@ -354388,7 +371463,7 @@ As the models are consistently treated, they are more suited for large-scale ana
     sc:url "http://cbm.bio.uniroma2.it/pdbinder/" .
 
 <https://bio.tools/pdbinout> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_1317,
         edam:topic_2814,
@@ -354405,7 +371480,7 @@ As the models are consistently treated, they are more suited for large-scale ana
     biotools:primaryContact "Adamiak RW" .
 
 <https://bio.tools/pdbj> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0081,
@@ -354427,8 +371502,25 @@ As the models are consistently treated, they are more suited for large-scale ana
     sc:url "http://pdbj.org/" ;
     biotools:primaryContact "Contact form" .
 
+<https://bio.tools/pdbl> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_3382 ;
+    sc:citation <https://doi.org/10.1109/TMI.2022.3161787>,
+        "pubmed:35320093" ;
+    sc:description "Improving Histopathological Tissue Classification with Plug-and-Play Pyramidal Deep-Broad Learning." ;
+    sc:featureList edam:operation_0479,
+        edam:operation_3553 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "PDBL" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/linjiatai/PDBL" .
+
 <https://bio.tools/pdbmd2cd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0593,
         edam:topic_2814,
@@ -354446,7 +371538,7 @@ As the models are consistently treated, they are more suited for large-scale ana
     sc:url "https://pdbmd2cd.cryst.bbk.ac.uk" .
 
 <https://bio.tools/pdbrenum> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Bioinformatics portal",
         "Web API" ;
     sc:applicationSubCategory edam:topic_0154,
@@ -354465,7 +371557,7 @@ PDBrenum provides PDB files in mmCIF and legacy-PDB format in which residues in
     sc:url "http://dunbrack3.fccc.edu/PDBrenum" .
 
 <https://bio.tools/pdbselect> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0157,
@@ -354483,7 +371575,7 @@ PDBrenum provides PDB files in mmCIF and legacy-PDB format in which residues in
     sc:url "http://bioinfo.tg.fh-giessen.de/pdbselect/" .
 
 <https://bio.tools/pdbsitescan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_3534 ;
@@ -354500,14 +371592,13 @@ PDBrenum provides PDB files in mmCIF and legacy-PDB format in which residues in
 
 <https://bio.tools/pdbsum> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1127" ;
-            sc:name "PDB ID" ;
-            sc:sameAs "http://edamontology.org/data_1127" ] ;
+            sc:additionalType "http://edamontology.org/data_1127" ;
+            sc:name "PDB ID" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2085" ;
-            sc:name "Structure report" ;
-            sc:sameAs "http://edamontology.org/data_2085" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2085" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Structure report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_2814 ;
     sc:citation <https://doi.org/10.1093/nar/gkt940>,
@@ -354525,14 +371616,13 @@ PDBrenum provides PDB files in mmCIF and legacy-PDB format in which residues in
 
 <https://bio.tools/pdbsum_generate> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ] ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein structure" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1537" ;
-            sc:name "Protein structure report" ;
-            sc:sameAs "http://edamontology.org/data_1537" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1537" ;
+            sc:name "Protein structure report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2814 ;
     sc:author "Roman Laskowski",
@@ -354553,7 +371643,7 @@ PDBrenum provides PDB files in mmCIF and legacy-PDB format in which residues in
     biotools:primaryContact "Roman Laskowski" .
 
 <https://bio.tools/pdcsm-cancer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2640,
@@ -354576,8 +371666,53 @@ PDBrenum provides PDB files in mmCIF and legacy-PDB format in which residues in
     sc:softwareHelp <http://biosig.unimelb.edu.au/pdcsm_cancer/help> ;
     sc:url "http://biosig.unimelb.edu.au/pdcsm_cancer" .
 
+<https://bio.tools/pdcsm-gpcr> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0820,
+        edam:topic_3343,
+        edam:topic_3375,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1093/BIOADV/VBAB031>,
+        "pmcid:PMC8651072",
+        "pubmed:34901870" ;
+    sc:description "Predicting potent GPCR ligands with graph-based signatures." ;
+    sc:featureList edam:operation_0269,
+        edam:operation_2995,
+        edam:operation_3938 ;
+    sc:isAccessibleForFree true ;
+    sc:name "pdCSM-GPCR" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://biosig.unimelb.edu.au/pdcsm_gpcr/" .
+
+<https://bio.tools/pdcsm-ppi> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0128,
+        edam:topic_0154,
+        edam:topic_0209,
+        edam:topic_3047,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1021/ACS.JCIM.1C01135>,
+        "pubmed:34719929" ;
+    sc:description "Using Graph-Based Signatures to Identify Protein-Protein Interaction Inhibitors." ;
+    sc:featureList edam:operation_2422,
+        edam:operation_2492,
+        edam:operation_3659,
+        edam:operation_4009 ;
+    sc:isAccessibleForFree true ;
+    sc:name "pdCSM-PPI" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <http://biosig.unimelb.edu.au/pdcsm_ppi/docs> ;
+    sc:url "http://biosig.unimelb.edu.au/pdcsm_ppi" .
+
 <https://bio.tools/pde> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_3068,
@@ -354596,8 +371731,30 @@ PDBrenum provides PDB files in mmCIF and legacy-PDB format in which residues in
     sc:softwareHelp <https://cran.r-project.org/web/packages/PDE/vignettes/PDE.html> ;
     sc:url "https://CRAN.R-project.org/package=PDE" .
 
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+    sc:additionalType "Script" ;
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+        edam:operation_2949,
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+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://git.mpi-cbg.de/mosaic/software/machine-learning/pde-stride" .
+
 <https://bio.tools/pdeep3> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
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     sc:citation <https://doi.org/10.1101/2020.09.13.295105> ;
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@@ -354608,7 +371765,7 @@ PDBrenum provides PDB files in mmCIF and legacy-PDB format in which residues in
     sc:url "http://pfind.ict.ac.cn/software/pdeep3" .
 
 <https://bio.tools/pdegem> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
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@@ -354624,90 +371781,71 @@ PDBrenum provides PDB files in mmCIF and legacy-PDB format in which residues in
 
 <https://bio.tools/pdestrian> a sc:SoftwareApplication ;
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-            sc:name "Protein sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2886" ],
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-            sc:name "Chemical structure image" ;
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-            sc:sameAs "http://edamontology.org/data_1463" ] ;
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+            sc:additionalType "http://edamontology.org/data_0984" ;
+            sc:name "Molecule name" ] ;
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@@ -354769,8 +371907,57 @@ PDBrenum provides PDB files in mmCIF and legacy-PDB format in which residues in
     biotools:primaryContact "Dr. Albert J. Kooistra",
         "Dr. Chris de Graaf" .
 
+<https://bio.tools/pdfdataextractor> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
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+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://pdfdataextractor.readthedocs.io/en/latest/index.html> ;
+    sc:url "https://github.com/cat-lemonade/PDFDataExtractor" .
+
+<https://bio.tools/pdgpcs> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_0928" ;
+            sc:name "Gene expression profile" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
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+        edam:topic_2640,
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+        edam:operation_2454,
+        edam:operation_3436 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "PDGPCS" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/NWPU-903PR/PDGPCS" .
+
 <https://bio.tools/pdid> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -354794,14 +371981,14 @@ PDBrenum provides PDB files in mmCIF and legacy-PDB format in which residues in
 
 <https://bio.tools/pdinfobuilder> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3110" ;
-            sc:name "Raw microarray data" ;
-            sc:sameAs "http://edamontology.org/data_3110" ] ;
+            sc:additionalType "http://edamontology.org/data_3110" ;
+            sc:encodingFormat "http://edamontology.org/format_1638" ;
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     bsc:output [ a bsct:FormalParameter ;
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-            sc:sameAs "http://edamontology.org/data_3111" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3111" ;
+            sc:encodingFormat "http://edamontology.org/format_3621" ;
+            sc:name "Processed microarray data" ] ;
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@@ -354822,7 +372009,7 @@ PDBrenum provides PDB files in mmCIF and legacy-PDB format in which residues in
     biotools:primaryContact "Benilton Carvalho" .
 
 <https://bio.tools/pdiviz> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0602,
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@@ -354839,7 +372026,7 @@ PDBrenum provides PDB files in mmCIF and legacy-PDB format in which residues in
     biotools:primaryContact "Andreas Schüller" .
 
 <https://bio.tools/pdm-utils> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
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@@ -354857,7 +372044,7 @@ The pdm_utils repository provides the source code for pdm_utils Python package,
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 <https://bio.tools/pdmclass> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
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@@ -354877,7 +372064,7 @@ The pdm_utils repository provides the source code for pdm_utils Python package,
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 <https://bio.tools/pdmethdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
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@@ -354896,7 +372083,7 @@ Parkinson's disease (PD) is the second most common neurodegenerative disease, of
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 <https://bio.tools/pdnet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
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@@ -354913,7 +372100,7 @@ As deep learning algorithms drive the progress in protein structure prediction,
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 <https://bio.tools/pdr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
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@@ -354927,7 +372114,7 @@ As deep learning algorithms drive the progress in protein structure prediction,
     sc:url "https://github.com/XLuyu/PDR" .
 
 <https://bio.tools/pdriver> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
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@@ -354942,22 +372129,8 @@ pDriver: A novel method for unravelling personalised coding and miNRA cancer dri
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-    sc:name "pdti-EssB" ;
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-
 <https://bio.tools/pdv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
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     sc:applicationSubCategory edam:topic_0121 ;
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@@ -354972,7 +372145,7 @@ Prediction of Drug-Target Interaction Based on Protein Features using Under-samp
     sc:url "http://pdv.zhang-lab.org/" .
 
 <https://bio.tools/pdxgem> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
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@@ -354994,8 +372167,27 @@ PDXGEM is a statistical bioinformatics and pharmacognomics pipeline to build a m
     sc:name "PDXGEM" ;
     sc:url "http://pdxgem.moffitt.org" .
 
+<https://bio.tools/pdxnet_portal> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0769,
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+        edam:topic_3170,
+        edam:topic_3676 ;
+    sc:citation <https://doi.org/10.1101/2021.10.15.464537> ;
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+        edam:operation_3431,
+        edam:operation_3435 ;
+    sc:isAccessibleForFree true ;
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+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://portal.pdxnetwork.org/" .
+
 <https://bio.tools/pdzpepint> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
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         edam:topic_0080,
@@ -355015,7 +372207,7 @@ PDXGEM is a statistical bioinformatics and pharmacognomics pipeline to build a m
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 <https://bio.tools/pe-analyzer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0199,
@@ -355035,7 +372227,7 @@ It is a JavaScript-based instant assessment tool for high-throughput sequencing
     biotools:primaryContact "Sangsu Bae" .
 
 <https://bio.tools/pe-assembler> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196 ;
     sc:citation "pubmed:21149345" ;
@@ -355050,7 +372242,7 @@ It is a JavaScript-based instant assessment tool for high-throughput sequencing
     sc:url "http://www.comp.nus.edu.sg/%7Ebioinfo/peasm/" .
 
 <https://bio.tools/pe-designer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0199,
@@ -355072,22 +372264,22 @@ It is a JavaScript-based instant assessment tool for high-throughput sequencing
 
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-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:citation <https://doi.org/10.1093/nar/gkw343>,
@@ -355103,7 +372295,7 @@ It is a JavaScript-based instant assessment tool for high-throughput sequencing
     biotools:primaryContact "Galaxy Support Team" .
 
 <https://bio.tools/peaKO> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3169,
@@ -355117,7 +372309,7 @@ It is a JavaScript-based instant assessment tool for high-throughput sequencing
     sc:url "https://peako.hoffmanlab.org" .
 
 <https://bio.tools/peace> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
@@ -355135,7 +372327,7 @@ It is a JavaScript-based instant assessment tool for high-throughput sequencing
     sc:url "http://www.peace-tools.org" .
 
 <https://bio.tools/peacoqc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3934 ;
     sc:citation <https://doi.org/10.1002/cyto.a.24501>,
@@ -355148,14 +372340,14 @@ It is a JavaScript-based instant assessment tool for high-throughput sequencing
 
 <https://bio.tools/peak2bed> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_3003" ;
+            sc:name "Annotation track" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3071,
         edam:topic_3168 ;
@@ -355172,7 +372364,7 @@ It is a JavaScript-based instant assessment tool for high-throughput sequencing
     biotools:primaryContact "Galaxy Support Team" .
 
 <https://bio.tools/peakC> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3295 ;
@@ -355191,7 +372383,7 @@ It is a JavaScript-based instant assessment tool for high-throughput sequencing
     biotools:primaryContact "Elzo de Wit" .
 
 <https://bio.tools/peakachu> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3169,
@@ -355207,22 +372399,21 @@ It is a JavaScript-based instant assessment tool for high-throughput sequencing
 
 <https://bio.tools/peakanalyzer> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2530" ;
-            sc:name "Organism report" ;
-            sc:sameAs "http://edamontology.org/data_2530" ],
+            sc:additionalType "http://edamontology.org/data_2531" ;
+            sc:encodingFormat "http://edamontology.org/format_3005" ;
+            sc:name "Experiment report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2531" ;
-            sc:name "Experiment report" ;
-            sc:sameAs "http://edamontology.org/data_2531" ] ;
+            sc:additionalType "http://edamontology.org/data_2530" ;
+            sc:encodingFormat "http://edamontology.org/format_2305" ;
+            sc:name "Organism report" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0950" ;
-            sc:name "Mathematical model" ;
-            sc:sameAs "http://edamontology.org/data_0950" ],
+            sc:additionalType "http://edamontology.org/data_0950" ;
+            sc:encodingFormat "http://edamontology.org/format_2032" ;
+            sc:name "Mathematical model" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0085,
         edam:topic_3517,
@@ -355241,24 +372432,42 @@ It is a JavaScript-based instant assessment tool for high-throughput sequencing
     sc:url "http://www.bioinformatics.org/peakanalyzer/wiki/" ;
     biotools:primaryContact "Mali Salmon-Divon" .
 
+<https://bio.tools/peakbot> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_3172,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1101/2021.10.11.463887> ;
+    sc:description "PeakBot is a python package for peak-picking in LC-HRMS profile mode data. It uses local-maxima in the LC-HRMS dataset each of which is then exported as a standarized two-dimensional area (rt x mz), which is used as the input for a machine-learning CNN model that reports whether the local-maxima is a chromatographic peak with left/right isomeric compounds or a signal of the background." ;
+    sc:featureList edam:operation_3215,
+        edam:operation_3799,
+        edam:operation_3803 ;
+    sc:isAccessibleForFree true ;
+    sc:license "CC-BY-NC-SA-4.0" ;
+    sc:name "PeakBot" ;
+    sc:operatingSystem "Linux",
+        "Windows" ;
+    sc:url "https://github.com/christophuv/PeakBot_example" .
+
 <https://bio.tools/peakcalling_findpeaks> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3169 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btn305>,
@@ -355275,7 +372484,7 @@ It is a JavaScript-based instant assessment tool for high-throughput sequencing
     biotools:primaryContact "Galaxy Support Team" .
 
 <https://bio.tools/peakfinder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_3179,
@@ -355289,8 +372498,33 @@ It is a JavaScript-based instant assessment tool for high-throughput sequencing
     sc:softwareVersion "1.0" ;
     sc:url "http://research.stowers-institute.org/gertonlab/peakfinder/" .
 
+<https://bio.tools/peakforest> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0219,
+        edam:topic_0593,
+        edam:topic_3172,
+        edam:topic_3520 ;
+    sc:citation <https://doi.org/10.1007/S11306-022-01899-3>,
+        "pmcid:PMC9197906",
+        "pubmed:35699774" ;
+    sc:description "A multi-platform digital infrastructure for interoperable metabolite spectral data and metadata management." ;
+    sc:featureList edam:operation_2422,
+        edam:operation_3431,
+        edam:operation_3801,
+        edam:operation_3803 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Other" ;
+    sc:name "PeakForest" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://peakforest.org" .
+
 <https://bio.tools/peakheights> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3277 ;
     sc:description "PeakHeights is a powerful tool for measuring signal intensities of selected peaks within ABI electropherograms and exporting the data into spreadsheets for easy manipulation. Large batches of samples can be processed at once." ;
@@ -355301,8 +372535,31 @@ It is a JavaScript-based instant assessment tool for high-throughput sequencing
     sc:softwareVersion "20130408" ;
     sc:url "http://dna.leeds.ac.uk/peakheights/" .
 
+<https://bio.tools/peakhood> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_3170,
+        edam:topic_3320,
+        edam:topic_3512,
+        edam:topic_3534,
+        edam:topic_3794 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAB755>,
+        "pmcid:PMC8796379",
+        "pubmed:34734974" ;
+    sc:description "Peakhood is a tool that takes a set of CLIP-seq peak regions, and for each region individually extracts the most likely site context (transcript or genomic)." ;
+    sc:featureList edam:operation_3215,
+        edam:operation_3222,
+        edam:operation_3902 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "Peakhood" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/BackofenLab/Peakhood" .
+
 <https://bio.tools/peaklink> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3473,
@@ -355318,7 +372575,7 @@ It is a JavaScript-based instant assessment tool for high-throughput sequencing
     sc:url "http://compgenomics.utsa.edu/zgroup/PeakLink/" .
 
 <https://bio.tools/peakonly> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3172,
@@ -355336,7 +372593,7 @@ peakonly is a novel approach written in Python (v3.5) for peaks (aka features) d
     sc:url "https://github.com/arseha/peakonly" .
 
 <https://bio.tools/peakpanther> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0769,
@@ -355359,7 +372616,7 @@ peakonly is a novel approach written in Python (v3.5) for peaks (aka features) d
     sc:url "https://phenomecentre.github.io/peakPantheR.github.io/" .
 
 <https://bio.tools/peakquant> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -355376,7 +372633,7 @@ peakonly is a novel approach written in Python (v3.5) for peaks (aka features) d
     biotools:primaryContact "Martin Eisenacher" .
 
 <https://bio.tools/peakranger> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_3169 ;
     sc:citation "pubmed:21554709" ;
@@ -355392,34 +372649,34 @@ peakonly is a novel approach written in Python (v3.5) for peaks (aka features) d
 
 <https://bio.tools/peaks_db> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ],
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3653" ;
+            sc:name "Mass spectrometry spectra" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ],
+            sc:additionalType "http://edamontology.org/data_2886" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence record" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2886" ;
-            sc:name "Protein sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2886" ],
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3653" ;
+            sc:name "Mass spectrometry spectra" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2886" ;
-            sc:name "Protein sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2886" ] ;
+            sc:additionalType "http://edamontology.org/data_2886" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ],
+            sc:additionalType "http://edamontology.org/data_0907" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Protein family report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0907" ;
-            sc:name "Protein family report" ;
-            sc:sameAs "http://edamontology.org/data_0907" ],
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Peptide identification" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3603" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0601,
@@ -355445,22 +372702,22 @@ peakonly is a novel approach written in Python (v3.5) for peaks (aka features) d
 
 <https://bio.tools/peaks_de_novo> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ],
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3653" ;
+            sc:name "Mass spectrometry spectra" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3653" ;
+            sc:name "Mass spectrometry spectra" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ],
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3604" ;
+            sc:name "Mass spectrometry spectra" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Peptide identification" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -355480,30 +372737,30 @@ peakonly is a novel approach written in Python (v3.5) for peaks (aka features) d
 
 <https://bio.tools/peaks_q> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ],
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Peptide identification" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ] ;
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Peptide identification" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2165" ;
-            sc:name "Protein ionisation curve" ;
-            sc:sameAs "http://edamontology.org/data_2165" ],
+            sc:additionalType "http://edamontology.org/data_2165" ;
+            sc:encodingFormat "http://edamontology.org/format_3604" ;
+            sc:name "Protein ionisation curve" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ],
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Expression data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ],
+            sc:additionalType "http://edamontology.org/data_1636" ;
+            sc:encodingFormat "http://edamontology.org/format_3604" ;
+            sc:name "Heat map" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1636" ;
-            sc:name "Heat map" ;
-            sc:sameAs "http://edamontology.org/data_1636" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3604" ;
+            sc:name "Image" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -355525,7 +372782,7 @@ peakonly is a novel approach written in Python (v3.5) for peaks (aka features) d
     sc:url "http://www.bioinfor.com/peaks/products/peaks-q-solution.html" .
 
 <https://bio.tools/peakseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3169 ;
     sc:citation <https://doi.org/10.1038/nbt.1518> ;
@@ -355540,7 +372797,7 @@ peakonly is a novel approach written in Python (v3.5) for peaks (aka features) d
         "Joel Rozowsky" .
 
 <https://bio.tools/peaktrace> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:citation <https://doi.org/10.4103/0974-777X.170496> ;
@@ -355555,14 +372812,14 @@ peakonly is a novel approach written in Python (v3.5) for peaks (aka features) d
 
 <https://bio.tools/peakzilla> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2012" ;
-            sc:name "Sequence coordinates" ;
-            sc:sameAs "http://edamontology.org/data_2012" ] ;
+            sc:additionalType "http://edamontology.org/data_2012" ;
+            sc:encodingFormat "http://edamontology.org/format_3003" ;
+            sc:name "Sequence coordinates" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2012" ;
-            sc:name "Sequence coordinates" ;
-            sc:sameAs "http://edamontology.org/data_2012" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2012" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Sequence coordinates" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0749 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btt470> ;
@@ -355578,7 +372835,7 @@ peakonly is a novel approach written in Python (v3.5) for peaks (aka features) d
     biotools:primaryContact "Anaïs Bardet" .
 
 <https://bio.tools/peao> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Ontology" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0780 ;
@@ -355594,7 +372851,7 @@ peakonly is a novel approach written in Python (v3.5) for peaks (aka features) d
     biotools:primaryContact "Inês Chaves" .
 
 <https://bio.tools/pear> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btt593>,
@@ -355609,7 +372866,7 @@ peakonly is a novel approach written in Python (v3.5) for peaks (aka features) d
     sc:url "http://sco.h-its.org/exelixis/web/software/pear/" .
 
 <https://bio.tools/peas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_2885,
@@ -355625,7 +372882,7 @@ peakonly is a novel approach written in Python (v3.5) for peaks (aka features) d
         "Shuhua Xu" .
 
 <https://bio.tools/pease> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0804,
@@ -355645,18 +372902,18 @@ peakonly is a novel approach written in Python (v3.5) for peaks (aka features) d
 
 <https://bio.tools/peca> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3110" ;
-            sc:name "Raw microarray data" ;
-            sc:sameAs "http://edamontology.org/data_3110" ] ;
+            sc:additionalType "http://edamontology.org/data_3110" ;
+            sc:encodingFormat "http://edamontology.org/format_1637" ;
+            sc:name "Raw microarray data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3111" ;
-            sc:name "Processed microarray data" ;
-            sc:sameAs "http://edamontology.org/data_3111" ],
+            sc:additionalType "http://edamontology.org/data_3111" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Processed microarray data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1669" ;
-            sc:name "P-value" ;
-            sc:sameAs "http://edamontology.org/data_1669" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1669" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "P-value" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -355678,7 +372935,7 @@ peakonly is a novel approach written in Python (v3.5) for peaks (aka features) d
     biotools:primaryContact "Tomi Suomi" .
 
 <https://bio.tools/pecan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0622 ;
@@ -355692,22 +372949,22 @@ peakonly is a novel approach written in Python (v3.5) for peaks (aka features) d
 
 <https://bio.tools/pecan_dia> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0850" ;
-            sc:name "Sequence set" ;
-            sc:sameAs "http://edamontology.org/data_0850" ],
+            sc:additionalType "http://edamontology.org/data_0850" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Sequence set" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3244" ;
+            sc:name "Mass spectrometry spectra" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ],
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3621" ;
+            sc:name "Mass spectrometry spectra" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Peptide identification" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -355726,7 +372983,7 @@ peakonly is a novel approach written in Python (v3.5) for peaks (aka features) d
     biotools:primaryContact "Michael MacCoss" .
 
 <https://bio.tools/pecanpy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3168,
         edam:topic_3474 ;
@@ -355741,7 +372998,7 @@ Learning low-dimensional representations (embeddings) of nodes in large graphs i
     sc:url "https://github.com/krishnanlab/pecanpy" .
 
 <https://bio.tools/pecax> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0602,
@@ -355761,7 +373018,7 @@ Learning low-dimensional representations (embeddings) of nodes in large graphs i
     sc:url "https://github.com/KohlbacherLab/PeCaX-docker" .
 
 <https://bio.tools/pecop> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0623,
@@ -355779,7 +373036,7 @@ Learning low-dimensional representations (embeddings) of nodes in large graphs i
     biotools:primaryContact "Friedberg I" .
 
 <https://bio.tools/pecora> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -355803,7 +373060,7 @@ Peptide correlation analysis (PeCorA). Detection of Discordant Peptide Quantitie
     sc:url "https://github.com/jessegmeyerlab/PeCorA" .
 
 <https://bio.tools/ped> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0659,
@@ -355825,7 +373082,7 @@ Peptide correlation analysis (PeCorA). Detection of Discordant Peptide Quantitie
     sc:url "http://www.pancreasexpression.org" .
 
 <https://bio.tools/ped-draw> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_3053,
         edam:topic_3382 ;
@@ -355844,7 +373101,7 @@ ped_draw reads in a ped file (from a specified file or from /dev/stdin) and gene
     sc:url "https://peddraw.github.io" .
 
 <https://bio.tools/pedagog> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_3056,
@@ -355859,7 +373116,7 @@ ped_draw reads in a ped file (from a specified file or from /dev/stdin) and gene
     biotools:primaryContact "Jason Coombs" .
 
 <https://bio.tools/pedcheck> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3053 ;
@@ -355874,7 +373131,7 @@ ped_draw reads in a ped file (from a specified file or from /dev/stdin) and gene
     sc:url "http://watson.hgen.pitt.edu/register/docs/pedcheck.html" .
 
 <https://bio.tools/pedcut> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3053,
         edam:topic_3056,
@@ -355890,7 +373147,7 @@ ped_draw reads in a ped file (from a specified file or from /dev/stdin) and gene
     biotools:primaryContact "Tatyana I. Axenovich" .
 
 <https://bio.tools/pedhunter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3053,
         edam:topic_3056,
@@ -355906,7 +373163,7 @@ ped_draw reads in a ped file (from a specified file or from /dev/stdin) and gene
         "Richa Agarwala" .
 
 <https://bio.tools/pedibd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3053,
         edam:topic_3056,
@@ -355922,7 +373179,7 @@ ped_draw reads in a ped file (from a specified file or from /dev/stdin) and gene
     biotools:primaryContact "Jing Li" .
 
 <https://bio.tools/pedican> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_2815,
@@ -355942,7 +373199,7 @@ ped_draw reads in a ped file (from a specified file or from /dev/stdin) and gene
     biotools:primaryContact "Support" .
 
 <https://bio.tools/pedig> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3055,
         edam:topic_3056 ;
@@ -355955,7 +373212,7 @@ ped_draw reads in a ped file (from a specified file or from /dev/stdin) and gene
     sc:url "https://qgsp.jouy.inra.fr/index.php?option=com_content&view=article&id=53&Itemid=57" .
 
 <https://bio.tools/pedigraph> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3053,
         edam:topic_3500 ;
@@ -355967,7 +373224,7 @@ ped_draw reads in a ped file (from a specified file or from /dev/stdin) and gene
     sc:url "http://animalgene.umn.edu/pedigraph/index.html" .
 
 <https://bio.tools/pedigree-draw> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3053 ;
     sc:description "It is a software that provides for creation, editing and drawing of pedigrees, or family trees, of human or non-human extended family lineages. It was developed originally for use in analyzing population data gathered for biomedical and genetic research. The program can be used to collect and edit biographical data found in the course of family history research, as well as pictures of family members, and display or print those data in hierarchical diagrams suitable for publication." ;
@@ -355979,7 +373236,7 @@ ped_draw reads in a ped file (from a specified file or from /dev/stdin) and gene
     sc:url "http://www.pedigree-draw.com/" .
 
 <https://bio.tools/pedigreejs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_2640,
@@ -355997,7 +373254,7 @@ ped_draw reads in a ped file (from a specified file or from /dev/stdin) and gene
     biotools:primaryContact "Tim Carver" .
 
 <https://bio.tools/pedigreeonline> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0102,
@@ -356016,7 +373273,7 @@ ped_draw reads in a ped file (from a specified file or from /dev/stdin) and gene
     sc:url "http://www.ig.zju.edu.cn/PedigreeOnline/" .
 
 <https://bio.tools/pedigreequery> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3053,
         edam:topic_3056,
@@ -356032,7 +373289,7 @@ ped_draw reads in a ped file (from a specified file or from /dev/stdin) and gene
     biotools:primaryContact "Kirichenko AV." .
 
 <https://bio.tools/pedigreesim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3053,
@@ -356049,7 +373306,7 @@ ped_draw reads in a ped file (from a specified file or from /dev/stdin) and gene
     biotools:primaryContact "Roeland E Voorrips" .
 
 <https://bio.tools/pedimap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0780,
@@ -356064,7 +373321,7 @@ ped_draw reads in a ped file (from a specified file or from /dev/stdin) and gene
     biotools:primaryContact "Roeland E. Voorrips" .
 
 <https://bio.tools/pedimpute> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2885,
@@ -356079,7 +373336,7 @@ ped_draw reads in a ped file (from a specified file or from /dev/stdin) and gene
     biotools:primaryContact "E.L.Nicolazzi" .
 
 <https://bio.tools/pedisnp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2885,
@@ -356097,7 +373354,7 @@ ped_draw reads in a ped file (from a specified file or from /dev/stdin) and gene
     biotools:primaryContact "Jonathan Pevsner" .
 
 <https://bio.tools/peditree> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0780,
@@ -356112,7 +373369,7 @@ ped_draw reads in a ped file (from a specified file or from /dev/stdin) and gene
     biotools:primaryContact "ralph.vanberloo@wur.nl." .
 
 <https://bio.tools/pedl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0218,
         edam:topic_0602,
@@ -356128,7 +373385,7 @@ ped_draw reads in a ped file (from a specified file or from /dev/stdin) and gene
     sc:url "https://github.com/leonweber/pedl" .
 
 <https://bio.tools/pedminer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0634,
         edam:topic_2885,
@@ -356151,7 +373408,7 @@ Inheritance Pattern: Autosomal recessive.""" ;
     sc:url "https://mcg.ustc.edu.cn/bsc/pedminer/" .
 
 <https://bio.tools/pedpeel> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2269,
@@ -356169,7 +373426,7 @@ Inheritance Pattern: Autosomal recessive.""" ;
     biotools:primaryContact "Nadezhda Belonogova" .
 
 <https://bio.tools/pedphase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2885,
@@ -356184,7 +373441,7 @@ Inheritance Pattern: Autosomal recessive.""" ;
     biotools:primaryContact "Jing Li" .
 
 <https://bio.tools/pedro> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0621,
@@ -356207,7 +373464,7 @@ Inheritance Pattern: Autosomal recessive.""" ;
     biotools:primaryContact "Kevin Garwood (Support)" .
 
 <https://bio.tools/pedstats> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_2269,
@@ -356224,7 +373481,7 @@ Inheritance Pattern: Autosomal recessive.""" ;
     sc:url "http://www.sph.umich.edu/csg/abecasis/PedStats/index.html" .
 
 <https://bio.tools/pedsys> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_3071,
@@ -356239,14 +373496,14 @@ Inheritance Pattern: Autosomal recessive.""" ;
 
 <https://bio.tools/peffect> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2974" ;
-            sc:name "Protein sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_2974" ] ;
+            sc:additionalType "http://edamontology.org/data_2974" ;
+            sc:encodingFormat "http://edamontology.org/format_2200" ;
+            sc:name "Protein sequence (raw)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Sequence features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3510 ;
@@ -356272,7 +373529,7 @@ Inheritance Pattern: Autosomal recessive.""" ;
     sc:url "https://rostlab.org/services/peffect/" .
 
 <https://bio.tools/pegasys> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654,
@@ -356292,7 +373549,7 @@ Inheritance Pattern: Autosomal recessive.""" ;
     biotools:primaryContact "Contact Form" .
 
 <https://bio.tools/pegfinder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0632,
         edam:topic_0821,
@@ -356309,14 +373566,13 @@ Inheritance Pattern: Autosomal recessive.""" ;
 
 <https://bio.tools/pegit> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ],
+            sc:additionalType "http://edamontology.org/data_2909" ;
+            sc:name "Organism name" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2909" ;
-            sc:name "Organism name" ;
-            sc:sameAs "http://edamontology.org/data_2909" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:encodingFormat "http://edamontology.org/format_2554" ;
+            sc:name "Nucleic acid sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0091,
@@ -356343,7 +373599,7 @@ Inheritance Pattern: Autosomal recessive.""" ;
     sc:url "https://pegit.giehmlab.dk" .
 
 <https://bio.tools/pegr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0769,
@@ -356364,26 +373620,23 @@ Inheritance Pattern: Autosomal recessive.""" ;
 
 <https://bio.tools/pegs> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1235" ;
-            sc:name "Sequence cluster" ;
-            sc:sameAs "http://edamontology.org/data_1235" ],
+            sc:additionalType "http://edamontology.org/data_2085" ;
+            sc:encodingFormat "http://edamontology.org/format_3003" ;
+            sc:name "Structure report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3917" ;
-            sc:name "Count matrix" ;
-            sc:sameAs "http://edamontology.org/data_3917" ],
+            sc:additionalType "http://edamontology.org/data_1235" ;
+            sc:name "Sequence cluster" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2085" ;
-            sc:name "Structure report" ;
-            sc:sameAs "http://edamontology.org/data_2085" ] ;
+            sc:additionalType "http://edamontology.org/data_3917" ;
+            sc:encodingFormat "http://edamontology.org/format_3003" ;
+            sc:name "Count matrix" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1636" ;
-            sc:name "Heat map" ;
-            sc:sameAs "http://edamontology.org/data_1636" ],
+            sc:additionalType "http://edamontology.org/data_0951" ;
+            sc:name "Statistical estimate score" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0951" ;
-            sc:name "Statistical estimate score" ;
-            sc:sameAs "http://edamontology.org/data_0951" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1636" ;
+            sc:name "Heat map" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0749,
@@ -356406,7 +373659,7 @@ Inheritance Pattern: Autosomal recessive.""" ;
     sc:url "https://pegs.readthedocs.io/en/latest/" .
 
 <https://bio.tools/pele> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -356429,7 +373682,7 @@ Inheritance Pattern: Autosomal recessive.""" ;
     biotools:primaryContact "Joan Gilabert" .
 
 <https://bio.tools/pemer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_3175 ;
     sc:citation "pubmed:19236709" ;
@@ -356441,7 +373694,7 @@ Inheritance Pattern: Autosomal recessive.""" ;
     biotools:primaryContact "Mark Gerstein" .
 
 <https://bio.tools/pempni> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0128,
@@ -356463,10 +373716,9 @@ Inheritance Pattern: Autosomal recessive.""" ;
 
 <https://bio.tools/pen> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2099" ;
-            sc:name "Name" ;
-            sc:sameAs "http://edamontology.org/data_2099" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2099" ;
+            sc:name "Name" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -356490,7 +373742,7 @@ Inheritance Pattern: Autosomal recessive.""" ;
     sc:url "http://combio.snu.ac.kr/pen" .
 
 <https://bio.tools/penda> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2640,
         edam:topic_3170,
@@ -356507,7 +373759,7 @@ Inheritance Pattern: Autosomal recessive.""" ;
     sc:url "https://github.com/bcm-uga/penda" .
 
 <https://bio.tools/penguin> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_0769,
@@ -356524,7 +373776,7 @@ Inheritance Pattern: Autosomal recessive.""" ;
     biotools:primaryContact "Sarath Chandra Janga" .
 
 <https://bio.tools/penncnv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_2885,
@@ -356539,7 +373791,7 @@ Inheritance Pattern: Autosomal recessive.""" ;
     sc:url "http://penncnv.openbioinformatics.org/en/latest/" .
 
 <https://bio.tools/penncnv2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2885,
         edam:topic_3063,
@@ -356556,7 +373808,7 @@ Inheritance Pattern: Autosomal recessive.""" ;
     sc:url "https://github.com/WGLab/PennCNV2/" .
 
 <https://bio.tools/pennseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0203,
@@ -356571,7 +373823,7 @@ Inheritance Pattern: Autosomal recessive.""" ;
     sc:url "http://sourceforge.net/projects/pennseq/" .
 
 <https://bio.tools/pentacle> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_2275,
@@ -356585,8 +373837,54 @@ Inheritance Pattern: Autosomal recessive.""" ;
     sc:url "http://www.moldiscovery.com/login.php" ;
     biotools:primaryContact "Manuel Pastor" .
 
+<https://bio.tools/pentad> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0654,
+        edam:topic_3295,
+        edam:topic_3940 ;
+    sc:citation <https://doi.org/10.1186/S12859-022-04654-6>,
+        "pmcid:PMC8976968",
+        "pubmed:35366792" ;
+    sc:description "A tool for distance-dependent analysis of Hi-C interactions within and between chromatin compartments." ;
+    sc:featureList edam:operation_2939,
+        edam:operation_3799 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "Pentad" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/magnitov/pentad" .
+
+<https://bio.tools/pentunfold> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0130,
+        edam:topic_0154,
+        edam:topic_3520,
+        edam:topic_3538,
+        edam:topic_3542 ;
+    sc:citation <https://doi.org/10.1007/S00726-022-03153-5>,
+        "pmcid:PMC8924573",
+        "pubmed:35294674" ;
+    sc:description "The PentUnFOLD algorithm as a tool to distinguish the dark and the light sides of the structural instability of proteins." ;
+    sc:featureList edam:operation_0272,
+        edam:operation_0468,
+        edam:operation_0469,
+        edam:operation_0470,
+        edam:operation_3904 ;
+    sc:isAccessibleForFree true ;
+    sc:name "PentUnFOLD" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <http://chemres.bsmu.by/PentUnFOLD-manual.pdf> ;
+    sc:url "http://3.17.12.213/pent-un-fold" .
+
 <https://bio.tools/pep> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0621,
         edam:topic_0769,
@@ -356613,14 +373911,14 @@ A PEP is written using a familiar yaml + csv format that can be read by our R an
 
 <https://bio.tools/pep-fold> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein structure" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2275 ;
     sc:citation "pubmed:19433514",
@@ -356638,20 +373936,44 @@ A PEP is written using a familiar yaml + csv format that can be read by our R an
     sc:url "https://mobyle.rpbs.univ-paris-diderot.fr/cgi-bin/portal.py#forms::PEP-FOLD3" ;
     biotools:primaryContact <https://orcid.org/0000-0003-1033-9895> .
 
+<https://bio.tools/pep-pred_na> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0121,
+        edam:topic_0154,
+        edam:topic_3322,
+        edam:topic_3335,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1016/J.COMPBIOMED.2022.105414>,
+        "pubmed:35358751" ;
+    sc:description "A web server for prediction of highly specific peptides targeting voltage-gated Na+ channels using machine learning techniques." ;
+    sc:featureList edam:operation_3454,
+        edam:operation_3631 ;
+    sc:isAccessibleForFree true ;
+    sc:name "PEP-PRED Na+" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://peppredna.herokuapp.com" .
+
 <https://bio.tools/pep-sitefinder> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ],
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein structure" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1461" ;
-            sc:name "Protein-ligand complex" ;
-            sc:sameAs "http://edamontology.org/data_1461" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1461" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein-ligand complex" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2275,
         edam:topic_3534 ;
@@ -356668,8 +373990,62 @@ A PEP is written using a familiar yaml + csv format that can be read by our R an
     sc:url "https://mobyle.rpbs.univ-paris-diderot.fr/cgi-bin/portal.py#forms::PEP-SiteFinder" ;
     biotools:primaryContact <https://orcid.org/0000-0003-1033-9895> .
 
+<https://bio.tools/pep-whisperer> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0121,
+        edam:topic_0128,
+        edam:topic_0154,
+        edam:topic_2275,
+        edam:topic_3299 ;
+    sc:citation <https://doi.org/10.1002/PROT.26384>,
+        "pubmed:35598299" ;
+    sc:description "Evolution Guided Design of Inhibitory Peptides" ;
+    sc:featureList edam:operation_0482,
+        edam:operation_2492,
+        edam:operation_4009 ;
+    sc:isAccessibleForFree true ;
+    sc:name "Pep-Whisperer" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://bioinfo3d.cs.tau.ac.il/PepWhisperer/" .
+
+<https://bio.tools/pep2d> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:citation <https://doi.org/10.1101/558791> ;
+    sc:description "Peptide Secondary Structure Prediction server that allows users to predict regular secondary structure in their peptides." ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "pep2d" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/pep2d/> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/pep2d/" .
+
+<https://bio.tools/pep2graph> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Desktop application" ;
+    sc:applicationSubCategory edam:topic_0080,
+        edam:topic_0121,
+        edam:topic_0154,
+        edam:topic_0634,
+        edam:topic_3520 ;
+    sc:citation <https://doi.org/10.1002/PMIC.202200147>,
+        "pubmed:35924633" ;
+    sc:description "A standalone tool to analyse proteolytic cleavages by proteases from gel-based mass spectrometry data." ;
+    sc:featureList edam:operation_0372 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "Pep2Graph" ;
+    sc:operatingSystem "Mac",
+        "Windows" ;
+    sc:url "http://www.mathivananlab.org/Pep2Graph" .
+
 <https://bio.tools/pep2path> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Suite" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -356694,22 +374070,22 @@ A PEP is written using a familiar yaml + csv format that can be read by our R an
 
 <https://bio.tools/pep3d> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ],
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_3655" ;
+            sc:name "Peptide identification" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ] ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3654" ;
+            sc:name "Mass spectrometry spectra" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0942" ;
-            sc:name "2D PAGE image" ;
-            sc:sameAs "http://edamontology.org/data_0942" ],
+            sc:additionalType "http://edamontology.org/data_0942" ;
+            sc:encodingFormat "http://edamontology.org/format_3603" ;
+            sc:name "2D PAGE image" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3603" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -356725,7 +374101,7 @@ A PEP is written using a familiar yaml + csv format that can be read by our R an
     sc:url "http://tools.proteomecenter.org/Pep3D.php" .
 
 <https://bio.tools/pepFunk> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
         edam:topic_0602,
@@ -356742,7 +374118,7 @@ pepFunk allows you to complete a peptide-focused functional enrichment workflow
     sc:url "https://shiny.imetalab.ca/pepFunk/" .
 
 <https://bio.tools/peparml> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121 ;
     sc:citation <https://doi.org/10.1002/0471250953.bi1323s44> ;
@@ -356753,7 +374129,7 @@ pepFunk allows you to complete a peptide-focused functional enrichment workflow
     biotools:primaryContact "Nathan J. Edwards" .
 
 <https://bio.tools/pepatac> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
         edam:topic_0769 ;
@@ -356775,12 +374151,38 @@ PEP, or Portable Encapsulated Projects, is a community effort to make sample met
     sc:name "PEPATAC" ;
     sc:url "https://pepatac.databio.org" .
 
+<https://bio.tools/pepbcl> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0121,
+        edam:topic_0154,
+        edam:topic_3336,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC352>,
+        "pubmed:35604077" ;
+    sc:description "Predicting protein-peptide binding residues via interpretable deep learning." ;
+    sc:featureList edam:operation_0272,
+        edam:operation_0482,
+        edam:operation_3092,
+        edam:operation_4009 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "PepBCL" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://server.wei-group.net/PepBCL/" .
+
 <https://bio.tools/pepbindpred> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein structure" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0602,
@@ -356801,10 +374203,10 @@ PEP, or Portable Encapsulated Projects, is a community effort to make sample met
 
 <https://bio.tools/pepbonpred> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein structure" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0602,
@@ -356824,7 +374226,7 @@ PEP, or Portable Encapsulated Projects, is a community effort to make sample met
     sc:url "http://bioware.ucd.ie/~compass/biowareweb/Server_pages/pepbindpred.php" .
 
 <https://bio.tools/pepbuild> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -356840,7 +374242,7 @@ PEP, or Portable Encapsulated Projects, is a community effort to make sample met
     sc:url "http://www.imtech.res.in/bvs/pepbuild/" .
 
 <https://bio.tools/pepcogen> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0121,
         edam:topic_0123,
@@ -356861,14 +374263,12 @@ A tool for generating all the possible combinations that a particular peptide se
 
 <https://bio.tools/pepcoil> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2886" ;
-            sc:name "Protein sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2886" ] ;
+            sc:additionalType "http://edamontology.org/data_2886" ;
+            sc:name "Protein sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:name "Protein features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2814 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -356899,18 +374299,15 @@ A tool for generating all the possible combinations that a particular peptide se
 
 <https://bio.tools/pepdigest> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1505" ;
-            sc:name "Amino acid index (molecular weight)" ;
-            sc:sameAs "http://edamontology.org/data_1505" ],
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
+            sc:additionalType "http://edamontology.org/data_1505" ;
+            sc:name "Amino acid index (molecular weight)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:name "Protein features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3510 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -356940,7 +374337,7 @@ A tool for generating all the possible combinations that a particular peptide se
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/pepdigest.html" .
 
 <https://bio.tools/pepdistiller> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0121,
@@ -356957,7 +374354,7 @@ A tool for generating all the possible combinations that a particular peptide se
         "Yunping Zhu" .
 
 <https://bio.tools/pepexplorer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:citation <https://doi.org/10.1074/mcp.M113.037002>,
@@ -356975,7 +374372,7 @@ A tool for generating all the possible combinations that a particular peptide se
     sc:url "http://proteomics.fiocruz.br/software.html" .
 
 <https://bio.tools/pepformer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -356993,7 +374390,7 @@ A tool for generating all the possible combinations that a particular peptide se
     sc:url "https://github.com/WLYLab/PepFormer" .
 
 <https://bio.tools/pepfun> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0121,
@@ -357016,26 +374413,21 @@ A tool for generating all the possible combinations that a particular peptide se
 
 <https://bio.tools/pepinfo> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2886" ;
-            sc:name "Protein sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2886" ],
+            sc:additionalType "http://edamontology.org/data_1502" ;
+            sc:name "Amino acid index (chemical classes)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1502" ;
-            sc:name "Amino acid index (chemical classes)" ;
-            sc:sameAs "http://edamontology.org/data_1502" ],
+            sc:additionalType "http://edamontology.org/data_2886" ;
+            sc:name "Protein sequence record" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1506" ;
-            sc:name "Amino acid index (hydropathy)" ;
-            sc:sameAs "http://edamontology.org/data_1506" ] ;
+            sc:additionalType "http://edamontology.org/data_1506" ;
+            sc:name "Amino acid index (hydropathy)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1522" ;
-            sc:name "Protein sequence hydropathy plot" ;
-            sc:sameAs "http://edamontology.org/data_1522" ],
+            sc:additionalType "http://edamontology.org/data_0897" ;
+            sc:name "Protein property" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0897" ;
-            sc:name "Protein property" ;
-            sc:sameAs "http://edamontology.org/data_0897" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1522" ;
+            sc:name "Protein sequence hydropathy plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0123 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -357066,14 +374458,12 @@ A tool for generating all the possible combinations that a particular peptide se
 
 <https://bio.tools/pepinfo-ebi> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:name "Protein sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0897" ;
-            sc:name "Protein property" ;
-            sc:sameAs "http://edamontology.org/data_0897" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0897" ;
+            sc:name "Protein property" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0123 ;
     sc:author "EMBOSS",
@@ -357093,7 +374483,7 @@ A tool for generating all the possible combinations that a particular peptide se
     biotools:primaryContact "Web Production" .
 
 <https://bio.tools/pepis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3053,
@@ -357110,8 +374500,24 @@ A tool for generating all the possible combinations that a particular peptide se
     biotools:primaryContact "Patrick X. Zhao",
         "Shizhong Xu" .
 
+<https://bio.tools/peplife> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:citation <https://doi.org/10.1038/srep36617>,
+        "pmcid:PMC5098197",
+        "pubmed:27819351" ;
+    sc:description "PEPlife is a manually curated database of experimentally validated therapeutic peptides and their half-lives." ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "peplife" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/peplife/index.php> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/peplife/index.php" .
+
 <https://bio.tools/pepmapper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0154,
@@ -357129,7 +374535,7 @@ A tool for generating all the possible combinations that a particular peptide se
     sc:url "http://informatics.nenu.edu.cn/PepMapper/" .
 
 <https://bio.tools/pepmmsmimic> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2258 ;
     sc:citation <https://doi.org/10.1093/nar/gkr287> ;
@@ -357147,14 +374553,12 @@ A tool for generating all the possible combinations that a particular peptide se
 
 <https://bio.tools/pepnet> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2163" ;
-            sc:name "Helical net" ;
-            sc:sameAs "http://edamontology.org/data_2163" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2163" ;
+            sc:name "Helical net" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0123 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -357186,14 +374590,14 @@ A tool for generating all the possible combinations that a particular peptide se
 
 <https://bio.tools/pepnovo> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3653" ;
+            sc:name "Mass spectrometry spectra" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Peptide identification" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -357210,7 +374614,7 @@ A tool for generating all the possible combinations that a particular peptide se
     sc:url "http://proteomics.ucsd.edu/ProteoSAFe/" .
 
 <https://bio.tools/peppan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0196,
         edam:topic_0621,
@@ -357236,7 +374640,7 @@ This file includes all pan-genes predicted by PEPPAN in GFF3 format. Intact CDSs
     sc:url "https://github.com/zheminzhou/PEPPAN" .
 
 <https://bio.tools/pepper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0602,
@@ -357252,7 +374656,7 @@ This file includes all pan-genes predicted by PEPPAN in GFF3 format. Intact CDSs
     sc:url "http://www.issb.genopole.fr/Technology/pepper-cytoscape-app" .
 
 <https://bio.tools/pepper-deepvariant> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
@@ -357271,8 +374675,35 @@ This file includes all pan-genes predicted by PEPPAN in GFF3 format. Intact CDSs
     sc:url "https://github.com/kishwarshafin/pepper" ;
     biotools:primaryContact "Kishwar Shafin" .
 
+<https://bio.tools/peppi> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0080,
+        edam:topic_0121,
+        edam:topic_0128,
+        edam:topic_0769,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1016/J.JMB.2022.167530>,
+        "pmcid:PMC8897833",
+        "pubmed:35662463" ;
+    sc:description "Whole-proteome Protein-protein Interaction Prediction through Structure and Sequence Similarity, Functional Association, and Machine Learning." ;
+    sc:featureList edam:operation_2464,
+        edam:operation_2492,
+        edam:operation_3094 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "PEPPI" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://zhanggroup.org/PEPPI/" .
+
 <https://bio.tools/peppro-rna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_0769,
         edam:topic_3170,
@@ -357292,14 +374723,13 @@ PEPPRO is a pipeline for nascent RNA sequencing data. It can process PRO-seq, GR
 
 <https://bio.tools/peppsy> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2872" ;
-            sc:name "ID list" ;
-            sc:sameAs "http://edamontology.org/data_2872" ] ;
+            sc:additionalType "http://edamontology.org/data_2872" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "ID list" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2042" ;
-            sc:name "Evidence" ;
-            sc:sameAs "http://edamontology.org/data_2042" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2042" ;
+            sc:name "Evidence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3308 ;
@@ -357321,26 +374751,26 @@ PEPPRO is a pipeline for nascent RNA sequencing data. It can process PRO-seq, GR
 
 <https://bio.tools/peppy> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ],
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3653" ;
+            sc:name "Mass spectrometry spectra" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2887" ;
-            sc:name "Nucleic acid sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2887" ],
+            sc:additionalType "http://edamontology.org/data_2887" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Nucleic acid sequence record" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2886" ;
-            sc:name "Protein sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2886" ] ;
+            sc:additionalType "http://edamontology.org/data_2886" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ],
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Peptide identification" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_3003" ;
+            sc:name "Annotation track" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0121,
@@ -357364,14 +374794,14 @@ PEPPRO is a pipeline for nascent RNA sequencing data. It can process PRO-seq, GR
     sc:url "http://www.geneffects.com/peppy/" .
 
 <https://bio.tools/peppy-python-package> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "peppy is the official python package for reading Portable Encapsulated Projects or PEPs in python." ;
     sc:name "peppy" ;
     sc:softwareVersion "0.31.1" ;
     sc:url "http://peppy.databio.org/" .
 
 <https://bio.tools/pepr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3125,
         edam:topic_3169,
@@ -357388,14 +374818,37 @@ PEPPRO is a pipeline for nascent RNA sequencing data. It can process PRO-seq, GR
     biotools:primaryContact "Maureen A. Sartor" .
 
 <https://bio.tools/pepr-R-package> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "pepr is the official R package for reading Portable Encapsulated Projects or PEPs in R." ;
     sc:name "pepr" ;
     sc:softwareVersion "0.4.0" ;
     sc:url "http://code.databio.org/pepr/" .
 
+<https://bio.tools/pepsea> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0080,
+        edam:topic_0154,
+        edam:topic_0209,
+        edam:topic_2258,
+        edam:topic_3168 ;
+    sc:citation <https://doi.org/10.1021/acs.jcim.1c01360>,
+        "pubmed:35192366" ;
+    sc:description "Peptide Sequence Alignment and Visualization Tools to Enable Lead Optimization." ;
+    sc:featureList edam:operation_0292,
+        edam:operation_0564,
+        edam:operation_3096,
+        edam:operation_3644 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Other" ;
+    sc:name "PepSeA" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/Merck/PepSeA" .
+
 <https://bio.tools/pepserve> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154 ;
@@ -357412,7 +374865,7 @@ PEPPRO is a pipeline for nascent RNA sequencing data. It can process PRO-seq, GR
     biotools:primaryContact "George M. Spyrou" .
 
 <https://bio.tools/pepset> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
         edam:topic_0166,
@@ -357431,14 +374884,12 @@ A benchmark consisting of 185 protein-peptide complexes with peptide length rang
 
 <https://bio.tools/pepshell> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ] ;
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:name "Mass spectrometry data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2992" ;
-            sc:name "Protein structure image" ;
-            sc:sameAs "http://edamontology.org/data_2992" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2992" ;
+            sc:name "Protein structure image" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0121 ;
@@ -357456,10 +374907,10 @@ A benchmark consisting of 185 protein-peptide complexes with peptide length rang
 
 <https://bio.tools/pepsickle> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -357481,7 +374932,7 @@ A benchmark consisting of 185 protein-peptide complexes with peptide length rang
     sc:url "https://github.com/pdxgx/pepsickle" .
 
 <https://bio.tools/pepsite> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0128,
@@ -357504,7 +374955,7 @@ A benchmark consisting of 185 protein-peptide complexes with peptide length rang
     biotools:primaryContact "PepSite Support" .
 
 <https://bio.tools/pepsplice> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -357518,7 +374969,7 @@ A benchmark consisting of 185 protein-peptide complexes with peptide length rang
     sc:url "https://github.com/buotex/BICEPS/tree/master/libs/pepsplice" .
 
 <https://bio.tools/pepstat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0078,
@@ -357539,22 +374990,18 @@ A benchmark consisting of 185 protein-peptide complexes with peptide length rang
 
 <https://bio.tools/pepstats> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1505" ;
-            sc:name "Amino acid index (molecular weight)" ;
-            sc:sameAs "http://edamontology.org/data_1505" ],
+            sc:additionalType "http://edamontology.org/data_1502" ;
+            sc:name "Amino acid index (chemical classes)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1502" ;
-            sc:name "Amino acid index (chemical classes)" ;
-            sc:sameAs "http://edamontology.org/data_1502" ],
+            sc:additionalType "http://edamontology.org/data_2886" ;
+            sc:name "Protein sequence record" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2886" ;
-            sc:name "Protein sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2886" ] ;
+            sc:additionalType "http://edamontology.org/data_1505" ;
+            sc:name "Amino acid index (molecular weight)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0897" ;
-            sc:name "Protein property" ;
-            sc:sameAs "http://edamontology.org/data_0897" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0897" ;
+            sc:name "Protein property" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0123 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -357585,14 +375032,12 @@ A benchmark consisting of 185 protein-peptide complexes with peptide length rang
 
 <https://bio.tools/pepstats-ebi> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:name "Protein sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0897" ;
-            sc:name "Protein property" ;
-            sc:sameAs "http://edamontology.org/data_0897" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0897" ;
+            sc:name "Protein property" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0123 ;
     sc:author "EMBOSS",
@@ -357612,7 +375057,7 @@ A benchmark consisting of 185 protein-peptide complexes with peptide length rang
     biotools:primaryContact "Web Production" .
 
 <https://bio.tools/pepstr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0154,
@@ -357631,10 +375076,37 @@ A benchmark consisting of 185 protein-peptide complexes with peptide length rang
         "Mac",
         "Windows" ;
     sc:softwareHelp <http://osddlinux.osdd.net/raghava/pepstrmod/help.php> ;
-    sc:url "http://www.imtech.res.in/raghava/pepstr/" .
+    sc:url "http://webs.iiitd.edu.in/raghava/pepstr/" .
+
+<https://bio.tools/pepstr2> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:description "This server allows you to predict the 3D structure of peptides from its amino acid sequence." ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "pepstr2" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/pepstr2/> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/pepstr2/" .
+
+<https://bio.tools/pepstrmod> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:citation <https://doi.org/10.1186/s13062-015-0103-4> ;
+    sc:description "The PEPstrMOD server predicts the tertiary structure of small peptides with sequence length varying between 7 to 25 residues." ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "pepstrmod" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/pepstrmod/index.php> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/pepstrmod/index.php" .
 
 <https://bio.tools/pepsweetener> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0122,
@@ -357651,7 +375123,7 @@ A benchmark consisting of 185 protein-peptide complexes with peptide length rang
     biotools:primaryContact "ExPASy helpdesk" .
 
 <https://bio.tools/peptherdia> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0209,
@@ -357666,14 +375138,13 @@ A benchmark consisting of 185 protein-peptide complexes with peptide length rang
 
 <https://bio.tools/peptide-shaker> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ] ;
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:encodingFormat "http://edamontology.org/format_3651" ;
+            sc:name "Mass spectrometry data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:name "Image" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0121 ;
     sc:citation <https://doi.org/10.1038/nbt.3109>,
@@ -357689,29 +375160,8 @@ A benchmark consisting of 185 protein-peptide complexes with peptide length rang
     sc:url "http://compomics.github.io/projects/peptide-shaker.html" ;
     biotools:primaryContact "Lennart Martens" .
 
-<https://bio.tools/peptide_design_genetic_algorithm> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0154,
-        edam:topic_3047,
-        edam:topic_3053,
-        edam:topic_3315,
-        edam:topic_3336 ;
-    sc:citation <https://doi.org/10.1021/ACS.JCIM.9B01014>,
-        "pubmed:31868369" ;
-    sc:description """Populating Chemical Space with Peptides using a Genetic Algorithm.
-
-Peptide Design Genetic Algorithm (PDGA).
-
-run python run_PDGA.py population-size mutation-rate generation-gap query similarity-threshold topology.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'faerun', 'PDGA'""" ;
-    sc:featureList edam:operation_0224,
-        edam:operation_0394,
-        edam:operation_2939 ;
-    sc:name "peptide design genetic algorithm" ;
-    sc:url "https://github.com/reymond-group/PeptideDesignGA" .
-
 <https://bio.tools/peptide_match> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0157 ;
@@ -357729,54 +375179,48 @@ run python run_PDGA.py population-size mutation-rate generation-gap query simila
 
 <https://bio.tools/peptideatlas> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2384" ;
-            sc:name "IPI protein ID" ;
-            sc:sameAs "http://edamontology.org/data_2384" ],
+            sc:additionalType "http://edamontology.org/data_2398" ;
+            sc:name "Ensembl protein ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2398" ;
-            sc:name "Ensembl protein ID" ;
-            sc:sameAs "http://edamontology.org/data_2398" ],
+            sc:additionalType "http://edamontology.org/data_2398" ;
+            sc:name "Ensembl protein ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0989" ;
-            sc:name "Protein identifier" ;
-            sc:sameAs "http://edamontology.org/data_0989" ],
+            sc:additionalType "http://edamontology.org/data_0989" ;
+            sc:name "Protein identifier" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2398" ;
-            sc:name "Ensembl protein ID" ;
-            sc:sameAs "http://edamontology.org/data_2398" ],
+            sc:additionalType "http://edamontology.org/data_2398" ;
+            sc:name "Ensembl protein ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2398" ;
-            sc:name "Ensembl protein ID" ;
-            sc:sameAs "http://edamontology.org/data_2398" ],
+            sc:additionalType "http://edamontology.org/data_2398" ;
+            sc:name "Ensembl protein ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2398" ;
-            sc:name "Ensembl protein ID" ;
-            sc:sameAs "http://edamontology.org/data_2398" ] ;
+            sc:additionalType "http://edamontology.org/data_2384" ;
+            sc:name "IPI protein ID" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0896" ;
-            sc:name "Protein report" ;
-            sc:sameAs "http://edamontology.org/data_0896" ],
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Peptide identification" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ],
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Mass spectrometry data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ],
+            sc:additionalType "http://edamontology.org/data_0896" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Protein report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ],
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Peptide identification" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ],
+            sc:additionalType "http://edamontology.org/data_0896" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Protein report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0896" ;
-            sc:name "Protein report" ;
-            sc:sameAs "http://edamontology.org/data_0896" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Peptide identification" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154 ;
@@ -357792,26 +375236,26 @@ run python run_PDGA.py population-size mutation-rate generation-gap query simila
 
 <https://bio.tools/peptidecutter> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2291" ;
-            sc:name "UniProt ID" ;
-            sc:sameAs "http://edamontology.org/data_2291" ],
+            sc:additionalType "http://edamontology.org/data_3021" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "UniProt accession" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2974" ;
-            sc:name "Protein sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_2974" ],
+            sc:additionalType "http://edamontology.org/data_2974" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Protein sequence (raw)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1056" ;
-            sc:name "Database name" ;
-            sc:sameAs "http://edamontology.org/data_1056" ],
+            sc:additionalType "http://edamontology.org/data_1056" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Database name" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3021" ;
-            sc:name "UniProt accession" ;
-            sc:sameAs "http://edamontology.org/data_3021" ] ;
+            sc:additionalType "http://edamontology.org/data_2291" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "UniProt ID" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1238" ;
-            sc:name "Proteolytic digest" ;
-            sc:sameAs "http://edamontology.org/data_1238" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1238" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Proteolytic digest" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0123,
@@ -357823,7 +375267,7 @@ run python run_PDGA.py population-size mutation-rate generation-gap query simila
     sc:url "http://www.expasy.ch/tools/peptidecutter" .
 
 <https://bio.tools/peptidelocator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -357840,7 +375284,7 @@ run python run_PDGA.py population-size mutation-rate generation-gap query simila
     biotools:primaryContact "Denis C. Shields" .
 
 <https://bio.tools/peptidemass> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -357864,14 +375308,14 @@ run python run_PDGA.py population-size mutation-rate generation-gap query simila
 
 <https://bio.tools/peptideprophet> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ] ;
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_3655" ;
+            sc:name "Peptide identification" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_3655" ;
+            sc:name "Peptide identification" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_2269,
@@ -357889,7 +375333,7 @@ run python run_PDGA.py population-size mutation-rate generation-gap query simila
     sc:url "http://peptideprophet.sourceforge.net/index.html" .
 
 <https://bio.tools/peptidequant> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0154 ;
@@ -357905,7 +375349,7 @@ run python run_PDGA.py population-size mutation-rate generation-gap query simila
     biotools:primaryContact "Weichuan Yu" .
 
 <https://bio.tools/peptidereranking> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0121,
@@ -357922,34 +375366,34 @@ run python run_PDGA.py population-size mutation-rate generation-gap query simila
 
 <https://bio.tools/peptideshaker> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ],
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ],
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_3247" ;
+            sc:name "Peptide identification" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ] ;
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:encodingFormat "http://edamontology.org/format_3651" ;
+            sc:name "Mass spectrometry data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2992" ;
-            sc:name "Protein structure image" ;
-            sc:sameAs "http://edamontology.org/data_2992" ],
+            sc:additionalType "http://edamontology.org/data_2992" ;
+            sc:encodingFormat "http://edamontology.org/format_3604" ;
+            sc:name "Protein structure image" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3754" ;
-            sc:name "GO-term enrichment data" ;
-            sc:sameAs "http://edamontology.org/data_3754" ],
+            sc:additionalType "http://edamontology.org/data_2969" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Sequence image" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2969" ;
-            sc:name "Sequence image" ;
-            sc:sameAs "http://edamontology.org/data_2969" ],
+            sc:additionalType "http://edamontology.org/data_3754" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "GO-term enrichment data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0896" ;
-            sc:name "Protein report" ;
-            sc:sameAs "http://edamontology.org/data_0896" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0896" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Protein report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -357974,8 +375418,32 @@ run python run_PDGA.py population-size mutation-rate generation-gap query simila
     sc:url "http://compomics.github.io/projects/peptide-shaker.html" ;
     biotools:primaryContact "Dominik Kopczynsk" .
 
+<https://bio.tools/peptideshaker_online> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web service" ;
+    sc:applicationSubCategory edam:topic_0080,
+        edam:topic_0121,
+        edam:topic_0154,
+        edam:topic_0601,
+        edam:topic_3520 ;
+    sc:citation <https://doi.org/10.1021/ACS.JPROTEOME.1C00678>,
+        "pmcid:PMC8650087",
+        "pubmed:34709836" ;
+    sc:description "A User-Friendly Web-Based Framework for the Identification of Mass Spectrometry-Based Proteomics Data." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3644,
+        edam:operation_3767 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Apache-2.0" ;
+    sc:name "PeptideShaker Online" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://github.com/barsnes-group/peptide-shaker-online/wiki/PeptideShaker-Online-Setup> ;
+    sc:url "https://github.com/barsnes-group/peptide-shaker-online" .
+
 <https://bio.tools/peptidewitch> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
         edam:topic_0154 ;
@@ -357993,7 +375461,7 @@ PeptideWitch is designed to take raw spectral counting data and produce high-str
     sc:url "http://peptidewitch.online" .
 
 <https://bio.tools/peptimetric> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -358011,7 +375479,7 @@ PeptideWitch is designed to take raw spectral counting data and produce high-str
     sc:url "https://peptimetric.herokuapp.com" .
 
 <https://bio.tools/peptipedia> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0196,
@@ -358035,14 +375503,12 @@ PeptideWitch is designed to take raw spectral counting data and produce high-str
 
 <https://bio.tools/peptizer> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ] ;
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:name "Mass spectrometry data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:name "Mass spectrometry data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121 ;
@@ -358060,7 +375526,7 @@ PeptideWitch is designed to take raw spectral counting data and produce high-str
     sc:url "https://github.com/compomics/peptizer" .
 
 <https://bio.tools/pepvac> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2830 ;
@@ -358079,14 +375545,12 @@ PeptideWitch is designed to take raw spectral counting data and produce high-str
 
 <https://bio.tools/pepwheel> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2162" ;
-            sc:name "Helical wheel" ;
-            sc:sameAs "http://edamontology.org/data_2162" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2162" ;
+            sc:name "Helical wheel" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0092 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -358117,18 +375581,15 @@ PeptideWitch is designed to take raw spectral counting data and produce high-str
 
 <https://bio.tools/pepwindow> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2886" ;
-            sc:name "Protein sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2886" ],
+            sc:additionalType "http://edamontology.org/data_2886" ;
+            sc:name "Protein sequence record" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1501" ;
-            sc:name "Amino acid index" ;
-            sc:sameAs "http://edamontology.org/data_1501" ] ;
+            sc:additionalType "http://edamontology.org/data_1501" ;
+            sc:name "Amino acid index" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1522" ;
-            sc:name "Protein sequence hydropathy plot" ;
-            sc:sameAs "http://edamontology.org/data_1522" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1522" ;
+            sc:name "Protein sequence hydropathy plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0123 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -358159,14 +375620,12 @@ PeptideWitch is designed to take raw spectral counting data and produce high-str
 
 <https://bio.tools/pepwindow-ebi> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:name "Protein sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1522" ;
-            sc:name "Protein sequence hydropathy plot" ;
-            sc:sameAs "http://edamontology.org/data_1522" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1522" ;
+            sc:name "Protein sequence hydropathy plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0123 ;
     sc:author "EMBOSS",
@@ -358187,18 +375646,15 @@ PeptideWitch is designed to take raw spectral counting data and produce high-str
 
 <https://bio.tools/pepwindowall> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1384" ;
-            sc:name "Sequence alignment (protein)" ;
-            sc:sameAs "http://edamontology.org/data_1384" ],
+            sc:additionalType "http://edamontology.org/data_1501" ;
+            sc:name "Amino acid index" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1501" ;
-            sc:name "Amino acid index" ;
-            sc:sameAs "http://edamontology.org/data_1501" ] ;
+            sc:additionalType "http://edamontology.org/data_1384" ;
+            sc:name "Sequence alignment (protein)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1522" ;
-            sc:name "Protein sequence hydropathy plot" ;
-            sc:sameAs "http://edamontology.org/data_1522" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1522" ;
+            sc:name "Protein sequence hydropathy plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0123 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -358228,7 +375684,7 @@ PeptideWitch is designed to take raw spectral counting data and produce high-str
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/pepwindowall.html" .
 
 <https://bio.tools/pepx> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0081,
@@ -358245,14 +375701,14 @@ PeptideWitch is designed to take raw spectral counting data and produce high-str
 
 <https://bio.tools/pepxml2excel> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ] ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_3468" ;
+            sc:name "Expression data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Expression data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_2269,
@@ -358269,7 +375725,7 @@ PeptideWitch is designed to take raw spectral counting data and produce high-str
     sc:url "http://www.ms-utils.org/pepXML2Excel.html" .
 
 <https://bio.tools/pepxmltab> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -358288,7 +375744,7 @@ PeptideWitch is designed to take raw spectral counting data and produce high-str
     biotools:primaryContact "Xiaojing Wang" .
 
 <https://bio.tools/peralign> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3308 ;
@@ -358304,7 +375760,7 @@ PeptideWitch is designed to take raw spectral counting data and produce high-str
     biotools:primaryContact "Authors" .
 
 <https://bio.tools/perceptron> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -358325,14 +375781,14 @@ PeptideWitch is designed to take raw spectral counting data and produce high-str
 
 <https://bio.tools/percolator> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ] ;
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Peptide identification" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Peptide identification" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_2269,
@@ -358353,7 +375809,7 @@ PeptideWitch is designed to take raw spectral counting data and produce high-str
     sc:url "http://noble.gs.washington.edu/proj/percolator/" .
 
 <https://bio.tools/peregrine> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_3068,
@@ -358374,7 +375830,7 @@ PeptideWitch is designed to take raw spectral counting data and produce high-str
     biotools:primaryContact "Raghotham Murthy" .
 
 <https://bio.tools/perfectmatch> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3518 ;
     sc:description "PerfectMatch is a tool to quantify Affymetric microarrays. Quantifications are based on the “Position Dependent Nearest Neighbor” model, which makes explicit use of probe sequence information." ;
@@ -358386,7 +375842,7 @@ PeptideWitch is designed to take raw spectral counting data and produce high-str
     sc:url "http://bioinformatics.mdanderson.org/main/PerfectMatch:Overview" .
 
 <https://bio.tools/perfectphyloR> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0102,
         edam:topic_0654 ;
@@ -358404,7 +375860,7 @@ The package reconstructs perfect phylogenies underlying a sample of DNA sequence
     sc:url "https://github.com/cbhagya/perfectphyloR/" .
 
 <https://bio.tools/perga> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0196,
@@ -358420,10 +375876,10 @@ The package reconstructs perfect phylogenies underlying a sample of DNA sequence
 
 <https://bio.tools/pergola> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3111" ;
-            sc:name "Processed microarray data" ;
-            sc:sameAs "http://edamontology.org/data_3111" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3111" ;
+            sc:encodingFormat "http://edamontology.org/format_3554" ;
+            sc:name "Processed microarray data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3053 ;
@@ -358444,7 +375900,7 @@ The package reconstructs perfect phylogenies underlying a sample of DNA sequence
     biotools:primaryContact <http://orcid.org/0000-0003-2065-6202> .
 
 <https://bio.tools/pergola-ge> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0621,
@@ -358464,7 +375920,7 @@ Welcome to Pergola’s documentation! — Pergola documentation.""" ;
     sc:url "http://cbcrg.github.io/pergola/" .
 
 <https://bio.tools/peril> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0659,
@@ -358485,7 +375941,7 @@ All code used in the RNAseq and MPRA analysis for "Enhancers in the Peril lincRN
     sc:url "https://github.com/agroff11/PerilPaperAnalysis" .
 
 <https://bio.tools/periodic-power-spectrum> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0654 ;
     sc:description "Periodic power spectrum with applications in detection of latent periodicities in DNA sequences" ;
@@ -358499,7 +375955,7 @@ All code used in the RNAseq and MPRA analysis for "Enhancers in the Peril lincRN
     biotools:primaryContact "Changchuan Yin" .
 
 <https://bio.tools/periodicdna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0196,
@@ -358525,7 +375981,7 @@ This R package helps the user identify k-mers (e.g. di- or tri-nucleotides) pres
     sc:url "https://js2264.github.io/periodicDNA/" .
 
 <https://bio.tools/periodogram-technique> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344 ;
@@ -358541,7 +375997,7 @@ This R package helps the user identify k-mers (e.g. di- or tri-nucleotides) pres
     biotools:primaryContact "Dr.D.K. Ravish" .
 
 <https://bio.tools/periscope> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_2229,
@@ -358557,8 +376013,30 @@ This R package helps the user identify k-mers (e.g. di- or tri-nucleotides) pres
     sc:softwareHelp <http://lightning.med.monash.edu/periscope/introduction.jsp> ;
     sc:url "http://lightning.med.monash.edu/periscope/" .
 
+<https://bio.tools/periscope-opt> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0736,
+        edam:topic_0749,
+        edam:topic_3474,
+        edam:topic_3510 ;
+    sc:citation <https://doi.org/10.1016/J.CSBJ.2022.06.006>,
+        "pmcid:PMC9201004",
+        "pubmed:35765650" ;
+    sc:description "PERISCOPE-Opt predicts the optimal fermentation conditions and expression yields of recombinant protein in the periplasm of Escherichia coli (E. coli) based on the user-specified amino acid sequence of the protein and an N-terminal signal peptide." ;
+    sc:featureList edam:operation_0409,
+        edam:operation_0418,
+        edam:operation_3659 ;
+    sc:isAccessibleForFree true ;
+    sc:name "PERISCOPE-Opt" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://periscope-opt.erc.monash.edu" .
+
 <https://bio.tools/peritumoral-regions> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3360,
         edam:topic_3452 ;
@@ -358571,21 +376049,8 @@ This R package helps the user identify k-mers (e.g. di- or tri-nucleotides) pres
     sc:name "peritumoral regions" ;
     sc:url "https://github.com/TunaliIlke/peritumoral_regions/" .
 
-<https://bio.tools/peritumoral_region-of-interests> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_2640,
-        edam:topic_3360,
-        edam:topic_3452 ;
-    sc:citation <https://doi.org/10.1002/MP.13808>,
-        "pmcid:PMC6842054",
-        "pubmed:31494946" ;
-    sc:description "> VERY_LOW CONFIDENCE! | > CORRECT NAME OF TOOL COULD ALSO BE 'peritumoral', 'radiomic', 'Peritumoral radiomic', 'CT radiomic' | Stability and reproducibility of computed tomography radiomic features extracted from peritumoral regions of lung cancer lesions | Identifying peritumoral regions of lung lesions" ;
-    sc:featureList edam:operation_3435,
-        edam:operation_3798 ;
-    sc:name "peritumoral region-of-interests" ;
-    sc:url "https://github.com/TunaliIlke/peritumoral_regions/" .
-
 <https://bio.tools/perm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622 ;
     sc:citation "pubmed:19675096" ;
@@ -358598,7 +376063,7 @@ This R package helps the user identify k-mers (e.g. di- or tri-nucleotides) pres
     biotools:primaryContact "Yangho Chen" .
 
 <https://bio.tools/permfit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0634,
@@ -358617,7 +376082,7 @@ This R package helps the user identify k-mers (e.g. di- or tri-nucleotides) pres
     biotools:primaryContact <https://orcid.org/0000-0002-3306-6722> .
 
 <https://bio.tools/permutcpssr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_0780,
@@ -358635,14 +376100,13 @@ This R package helps the user identify k-mers (e.g. di- or tri-nucleotides) pres
 
 <https://bio.tools/peroxibase> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2792" ;
-            sc:name "Protein ID (PeroxiBase)" ;
-            sc:sameAs "http://edamontology.org/data_2792" ] ;
+            sc:additionalType "http://edamontology.org/data_2792" ;
+            sc:name "Protein ID (PeroxiBase)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0896" ;
-            sc:name "Protein report" ;
-            sc:sameAs "http://edamontology.org/data_0896" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0896" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Protein report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0623 ;
     sc:citation <https://doi.org/10.1093/nar/gks1083>,
@@ -358658,7 +376122,7 @@ This R package helps the user identify k-mers (e.g. di- or tri-nucleotides) pres
     sc:url "http://peroxibase.toulouse.inra.fr/" .
 
 <https://bio.tools/peroxisomedb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -358685,7 +376149,7 @@ This R package helps the user identify k-mers (e.g. di- or tri-nucleotides) pres
         "Aurora Pujol" .
 
 <https://bio.tools/perseus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0203,
@@ -358699,8 +376163,71 @@ This R package helps the user identify k-mers (e.g. di- or tri-nucleotides) pres
     sc:url "http://www.biochem.mpg.de/en/rg/cox" ;
     biotools:primaryContact "Jürgen Cox" .
 
+<https://bio.tools/personadrive> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0199,
+        edam:topic_0602,
+        edam:topic_2640 ;
+    sc:citation <https://doi.org/10.1101/2021.10.11.463919> ;
+    sc:description "A Method for the Identification and Prioritization of Personalized Cancer Drivers." ;
+    sc:featureList edam:operation_2422,
+        edam:operation_3435,
+        edam:operation_3501 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "PersonaDrive" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/abu-compbio/PersonaDrive" .
+
+<https://bio.tools/personal_cancer_genome_reporter> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence variations" ] ;
+    bsc:output [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Workflow" ;
+    sc:applicationSubCategory edam:topic_0089,
+        edam:topic_0091,
+        edam:topic_0092,
+        edam:topic_0622,
+        edam:topic_2640,
+        edam:topic_3473,
+        edam:topic_3577 ;
+    sc:citation <https://doi.org/10.1093/bioinformatics/btx817>,
+        "pmcid:PMC5946881",
+        "pubmed:29272339" ;
+    sc:contributor <https://orcid.org/0000-0002-7502-7545> ;
+    sc:description "The Personal Cancer Genome Reporter (PCGR) is a stand-alone software package for translation of individual tumor genomes for precision cancer medicine. PCGR interprets primarily somatic SNVs/InDels and copy number aberrations. The software extends basic gene and variant annotations from the Ensembl's Variant Effect Predictor (VEP) with oncology-relevant, up-to-date annotations, and produces interactive HTML reports intended for clinical interpretation" ;
+    sc:featureList edam:operation_0331,
+        edam:operation_2422,
+        edam:operation_3225,
+        edam:operation_3226,
+        edam:operation_3672 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "Personal Cancer Genome Reporter (PCGR)" ;
+    sc:operatingSystem "Linux",
+        "Mac" ;
+    sc:softwareHelp <https://sigven.github.io/pcgr>,
+        <https://sigven.github.io/pcgr/articles/faq.html>,
+        <https://sigven.github.io/pcgr/articles/installation.html>,
+        <https://sigven.github.io/pcgr/articles/running.html#all-options>,
+        <https://sigven.github.io/pcgr/authors.html#citation>,
+        <https://sigven.github.io/pcgr/index.html#getting-started> ;
+    sc:softwareVersion "1.0.2" ;
+    sc:url "https://github.com/sigven/pcgr" ;
+    biotools:primaryContact <https://orcid.org/0000-0001-8468-2050> .
+
 <https://bio.tools/personal_genome_browser> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0622,
@@ -358723,7 +376250,7 @@ This R package helps the user identify k-mers (e.g. di- or tri-nucleotides) pres
     biotools:primaryContact "Yadong Wang*" .
 
 <https://bio.tools/personode> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3384,
         edam:topic_3444 ;
@@ -358740,8 +376267,33 @@ Personode is a user-friendly, open-source MatLab toolbox that semi-automatically
     sc:name "Personode" ;
     sc:url "http://www.nitrc.org/projects/personode" .
 
+<https://bio.tools/persvade> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0621,
+        edam:topic_0625,
+        edam:topic_2885,
+        edam:topic_3175,
+        edam:topic_3673 ;
+    sc:citation <https://doi.org/10.1101/2021.11.23.469703>,
+        <https://doi.org/10.1186/s13059-022-02737-4>,
+        "pmcid:PMC9380391",
+        "pubmed:35974382" ;
+    sc:description "perSVade runs structural variation (SV), small variant (SNPs and IN/DELs) and read depth-based Copy Number Variation (CNV) calling and annotation for WGS datasets." ;
+    sc:featureList edam:operation_3192,
+        edam:operation_3216,
+        edam:operation_3227,
+        edam:operation_3228 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "perSVade" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/Gabaldonlab/perSVade" .
+
 <https://bio.tools/perturbatr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3053 ;
     sc:description "perturbatr does stage-wise analysis of large-scale genetic perturbation screens for integrated data sets consisting of multiple screens. For multiple integrated perturbation screens a hierarchical model that considers the variance between different biological conditions is fitted. The resulting list of gene effects is then further extended using a network propagation algorithm to correct for false negatives." ;
@@ -358758,7 +376310,7 @@ Personode is a user-friendly, open-source MatLab toolbox that semi-automatically
     biotools:primaryContact "Simon Dirmeier" .
 
 <https://bio.tools/perturbnet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
         edam:topic_0625,
@@ -358783,7 +376335,7 @@ Depending on the MacOSX version and default compiler, the location of some of th
     sc:url "https://github.com/SeyoungKimLab/PerturbNet" .
 
 <https://bio.tools/peryton> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3068,
         edam:topic_3335,
@@ -358799,7 +376351,7 @@ Peryton constitutes a novel resource of experimentally supported microbe-disease
     sc:url "https://dianalab.e-ce.uth.gr/peryton/" .
 
 <https://bio.tools/pesi_ws> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.3897/BDJ.3.e5848> ;
@@ -358814,7 +376366,7 @@ Peryton constitutes a novel resource of experimentally supported microbe-disease
     sc:url "http://www.eu-nomen.eu/portal/webservices.php" .
 
 <https://bio.tools/peskaas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0769,
         edam:topic_3489 ;
@@ -358828,7 +376380,7 @@ PESKAAS: fisheries automated analytics system.""" ;
     sc:url "https://worldfish.shinyapps.io/PeskAAS/" .
 
 <https://bio.tools/pesm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0659,
         edam:topic_3474,
@@ -358845,7 +376397,7 @@ PESKAAS: fisheries automated analytics system.""" ;
     sc:url "https://github.com/bioinfomaticsCSU/PESM" .
 
 <https://bio.tools/pespotdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0128 ;
@@ -358866,7 +376418,7 @@ PESKAAS: fisheries automated analytics system.""" ;
     biotools:primaryContact <http://orcid.org/0000-0002-9528-6018> .
 
 <https://bio.tools/pest> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2259 ;
     sc:citation <https://doi.org/10.1016/j.envsoft.2018.06.009> ;
@@ -358881,7 +376433,7 @@ PESKAAS: fisheries automated analytics system.""" ;
     sc:url "http://www.pesthomepage.org" .
 
 <https://bio.tools/pesuca> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3375,
         edam:topic_3409,
         edam:topic_3421 ;
@@ -358896,7 +376448,7 @@ PESKAAS: fisheries automated analytics system.""" ;
     sc:url "https://pesuca.net/" .
 
 <https://bio.tools/pet-abc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3168,
@@ -358912,7 +376464,7 @@ PESKAAS: fisheries automated analytics system.""" ;
     biotools:primaryContact <https://orcid.org/0000-0001-7397-0364> .
 
 <https://bio.tools/pet-bids> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_3304,
         edam:topic_3384,
@@ -358932,7 +376484,7 @@ PESKAAS: fisheries automated analytics system.""" ;
     sc:url "https://openneuro.org/search/modality/pet" .
 
 <https://bio.tools/pet-tool> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654 ;
@@ -358945,7 +376497,7 @@ PESKAAS: fisheries automated analytics system.""" ;
     sc:url "http://www.gis.a-star.edu.sg/PET_Tool/" .
 
 <https://bio.tools/petal> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3360,
         edam:topic_3372 ;
@@ -358961,7 +376513,7 @@ PETAL software is written in the Python 3 programming language. It contains a se
     sc:url "https://github.com/Pex2892/PETAL" .
 
 <https://bio.tools/petalnet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -358978,7 +376530,7 @@ PETAL software is written in the Python 3 programming language. It contains a se
     biotools:primaryContact "Juli Petereit" .
 
 <https://bio.tools/petfold_and_petcofold> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0097,
@@ -359000,7 +376552,7 @@ PETAL software is written in the Python 3 programming language. It contains a se
     biotools:primaryContact "Center for non-coding RNA in Technology and Health" .
 
 <https://bio.tools/petkit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3168 ;
@@ -359013,7 +376565,7 @@ PETAL software is written in the Python 3 programming language. It contains a se
     sc:url "http://microbiology.se/software/petkit/" .
 
 <https://bio.tools/petri-net-exhaustive-simulator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0203,
         edam:topic_0602,
@@ -359027,7 +376579,7 @@ PETAL software is written in the Python 3 programming language. It contains a se
     sc:url "https://github.com/ivanovaos/PetriNetExhaustiveSimulator" .
 
 <https://bio.tools/pets> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0602,
@@ -359042,7 +376594,7 @@ PETAL software is written in the Python 3 programming language. It contains a se
     biotools:primaryContact "Qianmu Li" .
 
 <https://bio.tools/pevosoar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0154,
@@ -359064,7 +376616,7 @@ PETAL software is written in the Python 3 programming language. It contains a se
     biotools:primaryContact "Contact Form" .
 
 <https://bio.tools/pewo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0637,
         edam:topic_0769,
         edam:topic_3293 ;
@@ -359082,7 +376634,7 @@ PEWO compiles a set of workflows dedicated to the evaluation of phylogenetic pla
     sc:url "https://github.com/phylo42/PEWO" .
 
 <https://bio.tools/pez> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_3293 ;
@@ -359098,8 +376650,30 @@ PEWO compiles a set of workflows dedicated to the evaluation of phylogenetic pla
     sc:url "https://github.com/willpearse/pez" ;
     biotools:primaryContact "Pearse WD" .
 
+<https://bio.tools/pf-phospho> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0121,
+        edam:topic_0128,
+        edam:topic_0601,
+        edam:topic_3068,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1093/BIB/BBAC249>,
+        "pubmed:35753700" ;
+    sc:description "A machine learning-based phosphorylation sites prediction tool for Plasmodium proteins." ;
+    sc:featureList edam:operation_0417,
+        edam:operation_2492,
+        edam:operation_3904 ;
+    sc:isAccessibleForFree true ;
+    sc:name "Pf-Phospho" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://www.nii.ac.in/pfphospho.html" .
+
 <https://bio.tools/pf1-tools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:description "Scripts for sequence file handling." ;
@@ -359108,54 +376682,47 @@ PEWO compiles a set of workflows dedicated to the evaluation of phylogenetic pla
 
 <https://bio.tools/pfam> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1138" ;
-            sc:name "Pfam accession number" ;
-            sc:sameAs "http://edamontology.org/data_1138" ],
+            sc:additionalType "http://edamontology.org/data_1138" ;
+            sc:name "Pfam accession number" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2758" ;
-            sc:name "Pfam clan ID" ;
-            sc:sameAs "http://edamontology.org/data_2758" ],
+            sc:additionalType "http://edamontology.org/data_1179" ;
+            sc:name "NCBI taxonomy ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1179" ;
-            sc:name "NCBI taxonomy ID" ;
-            sc:sameAs "http://edamontology.org/data_1179" ],
+            sc:additionalType "http://edamontology.org/data_1138" ;
+            sc:name "Pfam accession number" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1138" ;
-            sc:name "Pfam accession number" ;
-            sc:sameAs "http://edamontology.org/data_1138" ],
+            sc:additionalType "http://edamontology.org/data_1096" ;
+            sc:name "Sequence accession (protein)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ],
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:name "Protein sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1096" ;
-            sc:name "Sequence accession (protein)" ;
-            sc:sameAs "http://edamontology.org/data_1096" ] ;
+            sc:additionalType "http://edamontology.org/data_2758" ;
+            sc:name "Pfam clan ID" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0907" ;
-            sc:name "Protein family report" ;
-            sc:sameAs "http://edamontology.org/data_0907" ],
+            sc:additionalType "http://edamontology.org/data_0907" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Protein family report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0907" ;
-            sc:name "Protein family report" ;
-            sc:sameAs "http://edamontology.org/data_0907" ],
+            sc:additionalType "http://edamontology.org/data_0858" ;
+            sc:name "Sequence signature matches" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ],
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Protein sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0907" ;
-            sc:name "Protein family report" ;
-            sc:sameAs "http://edamontology.org/data_0907" ],
+            sc:additionalType "http://edamontology.org/data_0907" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Protein family report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0907" ;
-            sc:name "Protein family report" ;
-            sc:sameAs "http://edamontology.org/data_0907" ],
+            sc:additionalType "http://edamontology.org/data_0907" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Protein family report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0858" ;
-            sc:name "Sequence signature matches" ;
-            sc:sameAs "http://edamontology.org/data_0858" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0907" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Protein family report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web API",
         "Web application" ;
@@ -359165,7 +376732,15 @@ PEWO compiles a set of workflows dedicated to the evaluation of phylogenetic pla
         edam:topic_0160,
         edam:topic_0623,
         edam:topic_0736 ;
-    sc:citation <https://doi.org/10.1007/springerreference_36286>,
+    sc:citation <https://doi.org/10.1093/nar/gkaa913>,
+        <https://doi.org/10.1093/nar/gkt1223>,
+        <https://doi.org/10.1093/nar/gkv1344>,
+        "pmcid:PMC3965110",
+        "pmcid:PMC4702930",
+        "pmcid:PMC7779014",
+        "pubmed:24288371",
+        "pubmed:26673716",
+        "pubmed:33125078",
         "pubmed:9223186" ;
     sc:description "Database which contains information about protein domains and families. For each entry a protein sequence alignment and a Hidden Markov Model is stored." ;
     sc:featureList edam:operation_0224,
@@ -359184,7 +376759,7 @@ PEWO compiles a set of workflows dedicated to the evaluation of phylogenetic pla
         "Pfam central helpdesk" .
 
 <https://bio.tools/pfamscan_api> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0623,
@@ -359201,8 +376776,27 @@ PEWO compiles a set of workflows dedicated to the evaluation of phylogenetic pla
     sc:softwareVersion "1" ;
     sc:url "http://www.ebi.ac.uk/Tools/webservices/services/pfa/pfamscan_rest" .
 
+<https://bio.tools/pfas-tox_database> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_2840,
+        edam:topic_3068,
+        edam:topic_3071,
+        edam:topic_3500 ;
+    sc:citation <https://doi.org/10.1016/J.ENVINT.2022.107408>,
+        "pubmed:35908389" ;
+    sc:description "A systematic evidence map of health studies on 29 per- and polyfluoroalkyl substances." ;
+    sc:featureList edam:operation_0305,
+        edam:operation_2422 ;
+    sc:isAccessibleForFree true ;
+    sc:name "PFAS-Tox Database" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://pfastoxdatabase.org" .
+
 <https://bio.tools/pfbnet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
         edam:topic_3170,
@@ -359221,7 +376815,7 @@ we present a novel method, namely prior fused boosting network inference method
     sc:url "https://github.com/ddche/PFBNet" .
 
 <https://bio.tools/pfclust> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3316 ;
     sc:citation <https://doi.org/10.1186/1471-2105-14-213> ;
@@ -359232,8 +376826,25 @@ we present a novel method, namely prior fused boosting network inference method
     sc:softwareHelp <http://chemistry.st-andrews.ac.uk/staff/jbom/group/PFClust.zip> ;
     sc:url "http://chemistry.st-andrews.ac.uk/staff/jbom/group/PFClust.html" .
 
+<https://bio.tools/pfeature> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Web application",
+        "Web service" ;
+    sc:applicationSubCategory edam:topic_0605,
+        edam:topic_3307 ;
+    sc:description "Pfeature is a web server for computing wide range of protein and peptides features from their amino acid sequence. Following are main menus for computing features; i) Composition-based features, ii) Binary profile of sequences, iii) evolutionary information based features, iv) structural descriptors, v) pattern based descriptors, and vi) model building, for a group of protein/peptide sequences. Additionally, users will also be able to generate these features for sub-parts of protein/peptide sequences. Pfeature be helpful to annotate structure, function and therapeutic properties of proteins/peptides." ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "Pfeature" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/pfeature/Pfeature_Manual.pdf> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/pfeature/" .
+
 <https://bio.tools/pfilt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154 ;
     sc:citation <https://doi.org/10.1016/S0968-0004(01)02039-4>,
@@ -359248,7 +376859,7 @@ we present a novel method, namely prior fused boosting network inference method
     sc:url "http://bioinfadmin.cs.ucl.ac.uk/downloads/pfilt/" .
 
 <https://bio.tools/pfind_studio> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -359267,7 +376878,7 @@ we present a novel method, namely prior fused boosting network inference method
     sc:url "http://pfind.ict.ac.cn/index.html" .
 
 <https://bio.tools/pflexana> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -359289,7 +376900,7 @@ we present a novel method, namely prior fused boosting network inference method
     biotools:primaryContact "David Hsu" .
 
 <https://bio.tools/pfmpred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_3324,
@@ -359302,11 +376913,31 @@ we present a novel method, namely prior fused boosting network inference method
         "Mac",
         "Windows" ;
     sc:softwareHelp <http://crdd.osdd.net/raghava/pfmpred/home.html> ;
-    sc:url "http://www.imtech.res.in/raghava/pfmpred/" ;
+    sc:url "http://webs.iiitd.edu.in/raghava/pfmpred/" ;
     biotools:primaryContact "Dr.G.P.S.Raghava" .
 
+<https://bio.tools/pfmuldl> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0089,
+        edam:topic_0623,
+        edam:topic_1775,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1016/J.COMPBIOMED.2022.105465>,
+        "pubmed:35366467" ;
+    sc:description "A novel strategy enabling multi-class and multi-label protein function annotation by integrating diverse deep learning methods." ;
+    sc:featureList edam:operation_0477,
+        edam:operation_1777 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "PFmulDL" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/idrblab/PFmulDL" .
+
 <https://bio.tools/pfold> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0099 ;
@@ -359324,7 +376955,7 @@ we present a novel method, namely prior fused boosting network inference method
     biotools:primaryContact "Zsuzsanna Sukosd" .
 
 <https://bio.tools/pfp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0166,
         edam:topic_1317,
@@ -359341,7 +376972,7 @@ we present a novel method, namely prior fused boosting network inference method
     biotools:primaryContact "Inbal Paz" .
 
 <https://bio.tools/pfp-fundseqe> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0736,
         edam:topic_1317,
@@ -359358,7 +376989,7 @@ we present a novel method, namely prior fused boosting network inference method
     biotools:primaryContact "Hong-Bin" .
 
 <https://bio.tools/pfp-go> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -359375,7 +377006,7 @@ we present a novel method, namely prior fused boosting network inference method
     biotools:primaryContact "Daisuke Kihara" .
 
 <https://bio.tools/pfp-pred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3473 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btl170> ;
@@ -359392,7 +377023,7 @@ we present a novel method, namely prior fused boosting network inference method
     sc:url "http://www.csbio.sjtu.edu.cn/bioinf/PFP-Pred/" .
 
 <https://bio.tools/pfred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0659,
         edam:topic_3382 ;
@@ -359414,7 +377045,7 @@ Note that this process will setup the pfredservice environment and install all n
     sc:url "https://github.com/pfred" .
 
 <https://bio.tools/pfsearch> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -359428,7 +377059,7 @@ Note that this process will setup the pfredservice environment and install all n
     sc:url "http://web.expasy.org/pftools/#pfsearchV3" .
 
 <https://bio.tools/pfstats> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0623,
         edam:topic_2269 ;
@@ -359443,7 +377074,7 @@ Note that this process will setup the pfredservice environment and install all n
     sc:url "http://www.biocomp.icb.ufmg.br/biocomp/?page_id=119" .
 
 <https://bio.tools/pftools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -359465,7 +377096,7 @@ Note that this process will setup the pfredservice environment and install all n
     biotools:primaryContact "pftools team" .
 
 <https://bio.tools/pg-hacker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3407,
@@ -359479,14 +377110,14 @@ Note that this process will setup the pfredservice environment and install all n
 
 <https://bio.tools/pga> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1383" ;
-            sc:name "Sequence alignment (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1383" ] ;
+            sc:additionalType "http://edamontology.org/data_1383" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence alignment (nucleic acid)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2886" ;
-            sc:name "Protein sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2886" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2886" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence record" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -359514,7 +377145,7 @@ Note that this process will setup the pfredservice environment and install all n
         "Shaohang Xu" .
 
 <https://bio.tools/pgainsim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2885,
         edam:topic_3055,
@@ -359530,7 +377161,7 @@ Note that this process will setup the pfredservice environment and install all n
     biotools:primaryContact <https://orcid.org/0000-0002-8460-0462> .
 
 <https://bio.tools/pgap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0654 ;
@@ -359544,7 +377175,7 @@ Note that this process will setup the pfredservice environment and install all n
     sc:url "http://sourceforge.net/projects/pgap/" .
 
 <https://bio.tools/pgca> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -359565,7 +377196,7 @@ Note that this process will setup the pfredservice environment and install all n
     biotools:primaryContact "Gabriela Cohen-Freue" .
 
 <https://bio.tools/pgcgap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0621,
@@ -359582,7 +377213,7 @@ Note that this process will setup the pfredservice environment and install all n
     sc:url "https://github.com/liaochenlanruo/pgcgap/" .
 
 <https://bio.tools/pgcloser> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0622,
         edam:topic_3168 ;
@@ -359600,7 +377231,7 @@ This tool is for gap-closing in the genome using long-reads or contigs. PGcloser
     sc:url "http://software.tobaccodb.org/software/pgcloser" .
 
 <https://bio.tools/pgd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -359627,7 +377258,7 @@ This tool is for gap-closing in the genome using long-reads or contigs. PGcloser
     biotools:primaryContact "Dale Tronrud" .
 
 <https://bio.tools/pgenn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0780,
@@ -359644,7 +377275,7 @@ This tool is for gap-closing in the genome using long-reads or contigs. PGcloser
     biotools:primaryContact "BioNLP and Text Mining Lab" .
 
 <https://bio.tools/pgfinder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -359665,7 +377296,7 @@ This tool is for gap-closing in the genome using long-reads or contigs. PGcloser
     sc:url "https://github.com/Mesnage-Org/PGFinder" .
 
 <https://bio.tools/pgltools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0622,
@@ -359685,7 +377316,7 @@ This tool is for gap-closing in the genome using long-reads or contigs. PGcloser
     biotools:primaryContact "William W. Greenwald" .
 
 <https://bio.tools/pgltools-chromatin> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3176,
@@ -359704,7 +377335,7 @@ This tool is for gap-closing in the genome using long-reads or contigs. PGcloser
     biotools:primaryContact <http://orcid.org/0000-0002-6274-1571> .
 
 <https://bio.tools/pglyco3> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0621,
@@ -359717,8 +377348,25 @@ This tool is for gap-closing in the genome using long-reads or contigs. PGcloser
     sc:name "pGlyco3" ;
     sc:url "https://github.com/pFindStudio/pGlyco3" .
 
+<https://bio.tools/pglycoquant> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Desktop application" ;
+    sc:applicationSubCategory edam:topic_0121,
+        edam:topic_3360,
+        edam:topic_3520 ;
+    sc:citation <https://doi.org/10.1101/2021.11.15.468561> ;
+    sc:description "pGlycoQuant with a deep residual network for precise and minuscule-missing-value quantitative glycoproteomics enabling the functional exploration of site-specific glycosylation." ;
+    sc:featureList edam:operation_3223,
+        edam:operation_3799 ;
+    sc:isAccessibleForFree true ;
+    sc:name "pGlycoQuant" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/expellir-arma/pGlycoQuant" .
+
 <https://bio.tools/pgm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0121,
@@ -359736,7 +377384,7 @@ This tool is for gap-closing in the genome using long-reads or contigs. PGcloser
     sc:url "http://www.agbase.msstate.edu/tools/pgm/" .
 
 <https://bio.tools/pgmicrod> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_3168,
         edam:topic_3474 ;
@@ -359754,7 +377402,7 @@ Linux operation system with python3.x.""" ;
     sc:url "https://github.com/BDanalysis/PGMicroD" .
 
 <https://bio.tools/pgmra> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0625,
@@ -359777,7 +377425,7 @@ Linux operation system with python3.x.""" ;
         "Javier Arnedo" .
 
 <https://bio.tools/pgp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1093/database/baw033>,
@@ -359807,7 +377455,7 @@ Linux operation system with python3.x.""" ;
         "Matthias Lange" .
 
 <https://bio.tools/pgql> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3474 ;
@@ -359824,7 +377472,7 @@ Linux operation system with python3.x.""" ;
     biotools:primaryContact "Schliep lab" .
 
 <https://bio.tools/pgrc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0654,
         edam:topic_3168 ;
@@ -359840,7 +377488,7 @@ Pseudogenome-based Read Compressor (PgRC) is an in-memory algorithm for compress
     sc:url "https://github.com/kowallus/PgRC" .
 
 <https://bio.tools/pgrnafinder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0099,
@@ -359857,7 +377505,7 @@ Pseudogenome-based Read Compressor (PgRC) is an in-memory algorithm for compress
         "Zhou Songyang" .
 
 <https://bio.tools/pgs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_2269 ;
@@ -359873,7 +377521,7 @@ Pseudogenome-based Read Compressor (PgRC) is an in-memory algorithm for compress
     sc:url "https://github.com/feizhe/PGS" .
 
 <https://bio.tools/pgs_catalog> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2885,
         edam:topic_3334,
@@ -359894,7 +377542,7 @@ The Polygenic Score (PGS) Catalog is an open database of published PGS and the r
     sc:url "http://www.PGSCatalog.org" .
 
 <https://bio.tools/pgs_classify> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3360,
@@ -359911,7 +377559,7 @@ The Polygenic Score (PGS) Catalog is an open database of published PGS and the r
     biotools:primaryContact "Federica Martina" .
 
 <https://bio.tools/pgsa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3168 ;
@@ -359925,7 +377573,7 @@ The Polygenic Score (PGS) Catalog is an open database of published PGS and the r
     sc:url "http://sun.aei.polsl.pl/REFRESH/index.php?page=projects&project=pgsa&subpage=about" .
 
 <https://bio.tools/pgsea> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -359944,7 +377592,7 @@ The Polygenic Score (PGS) Catalog is an open database of published PGS and the r
     biotools:primaryContact "Karl Dykema" .
 
 <https://bio.tools/pgt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654 ;
@@ -359957,8 +377605,56 @@ The Polygenic Score (PGS) Catalog is an open database of published PGS and the r
     sc:softwareHelp <http://www1.cse.wustl.edu/~jbuhler/pgt/projection-toolkit-0.42.tar.bz2> ;
     sc:url "http://www1.cse.wustl.edu/~jbuhler/pgt/" .
 
+<https://bio.tools/pguimp> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0153,
+        edam:topic_0202,
+        edam:topic_0769,
+        edam:topic_3375,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1002/PSP4.12704>,
+        "pmcid:PMC8592507",
+        "pubmed:34598320" ;
+    sc:description "Reproducible cleaning of bio-medical laboratory data using methods of visualization,error correction and transformation implemented as interactive R-notebooks." ;
+    sc:featureList edam:operation_2939,
+        edam:operation_3435,
+        edam:operation_3557,
+        edam:operation_3935 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "pguIMP" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://cran.r-project.org/web/packages/pguIMP/pguIMP.pdf> ;
+    sc:url "https://cran.r-project.org/web/packages/pguIMP/index.html" .
+
+<https://bio.tools/pgv> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0196,
+        edam:topic_0769,
+        edam:topic_0780,
+        edam:topic_0797,
+        edam:topic_3175 ;
+    sc:citation <https://doi.org/10.1186/S12859-021-04424-W>,
+        "pmcid:PMC8520301",
+        "pubmed:34656081" ;
+    sc:description "Reference-agnostic representation and visualization of pan-genomes." ;
+    sc:featureList edam:operation_0490,
+        edam:operation_3208,
+        edam:operation_3216 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "PGV" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/ucrbioinfo/PGV" .
+
 <https://bio.tools/pgx> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0121,
@@ -359974,7 +377670,7 @@ The Polygenic Score (PGS) Catalog is an open database of published PGS and the r
     sc:url "http://pgx.fenyolab.org/" .
 
 <https://bio.tools/pha-clustering> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3293,
@@ -359994,7 +377690,7 @@ The Polygenic Score (PGS) Catalog is an open database of published PGS and the r
     biotools:primaryContact "Yonggang Lu" .
 
 <https://bio.tools/pha4ge_sars-cov-2_contextual_data_specification> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0089 ;
     sc:citation <https://doi.org/10.20944/preprints202008.0220.v1> ;
@@ -360007,8 +377703,32 @@ Contains metadata collection template based on data standard designed to harmoni
     sc:name "PHA4GE SARS-CoV-2 Contextual Data Specification" ;
     sc:url "https://github.com/pha4ge/SARS-CoV-2-Contextual-Data-Specification" .
 
+<https://bio.tools/phact> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0199,
+        edam:topic_0769,
+        edam:topic_3293,
+        edam:topic_3316 ;
+    sc:citation <https://doi.org/10.1093/MOLBEV/MSAC114>,
+        "pmcid:PMC9178230",
+        "pubmed:35639618" ;
+    sc:description "Phylogeny-Aware Computing of Tolerance for Missense Mutations." ;
+    sc:featureList edam:operation_3226,
+        edam:operation_3461,
+        edam:operation_3478,
+        edam:operation_3745 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "PHACT" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/CompGenomeLab/PHACT" .
+
 <https://bio.tools/phaedra> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0209,
         edam:topic_0218,
@@ -360027,7 +377747,7 @@ Contains metadata collection template based on data standard designed to harmoni
     biotools:primaryContact "Paul Thompson" .
 
 <https://bio.tools/phage-commander> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0634,
         edam:topic_3520 ;
@@ -360045,7 +377765,7 @@ Phage Commander provides utilities to query various gene-encoding prediction too
     sc:url "https://github.com/mlazeroff/PhageCommander" .
 
 <https://bio.tools/phageai> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0218,
         edam:topic_3168,
         edam:topic_3474 ;
@@ -360059,8 +377779,25 @@ PhageAI is an application that simultaneously represents a repository of knowled
     sc:name "PhageAI" ;
     sc:url "https://phage.ai/" .
 
+<https://bio.tools/phagecocktail> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0798,
+        edam:topic_3303 ;
+    sc:citation <https://doi.org/10.1016/J.CMPB.2022.106865>,
+        "pubmed:35576688" ;
+    sc:description "An R package to design phage cocktails from experimental phage-bacteria infection networks." ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "PhageCocktail" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://cran.r-project.org/web/packages/PhageCocktail/PhageCocktail.pdf> ;
+    sc:url "https://cran.r-project.org/web/packages/PhageCocktail/index.html" .
+
 <https://bio.tools/phagefinder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0154,
@@ -360078,7 +377815,7 @@ The goal of this project is to provide an open-sourced, standardized and automat
     sc:url "http://phage-finder.sourceforge.net/" .
 
 <https://bio.tools/phagereceptor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0128,
@@ -360098,8 +377835,41 @@ PMID: doi: 10.11843/j.issn.0366-6964.2018.11.018 D01083026.""" ;
     sc:name "phageReceptor" ;
     sc:url "http://www.computationalbiology.cn/phageReceptor/index.html" .
 
+<https://bio.tools/phagesdb> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_0622,
+        edam:topic_0798,
+        edam:topic_3299,
+        edam:topic_3301 ;
+    sc:citation <https://doi.org/10.1371/JOURNAL.PPAT.1010602>,
+        "pmcid:PMC9262239",
+        "pubmed:35797343" ;
+    sc:description "The Actinobacteriophage Database." ;
+    sc:featureList edam:operation_0252 ;
+    sc:isAccessibleForFree true ;
+    sc:name "phagesdb" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://phagesdb.org" .
+
+<https://bio.tools/phagetb> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:description "PhageTB is a multilevel prediction method for predicting interactions between bacteriophages and pathogenic bacterial hosts." ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "phagetb" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/phagetb/> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/phagetb/" .
+
 <https://bio.tools/phageterm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3168,
@@ -360118,7 +377888,7 @@ PMID: doi: 10.11843/j.issn.0366-6964.2018.11.018 D01083026.""" ;
         "Marc Monot" .
 
 <https://bio.tools/phaistos> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0081 ;
     sc:citation <https://doi.org/10.1002/jcc.23292> ;
@@ -360135,7 +377905,7 @@ PMID: doi: 10.11843/j.issn.0366-6964.2018.11.018 D01083026.""" ;
     biotools:primaryContact "Wouter Boomsma" .
 
 <https://bio.tools/phanns> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0621,
         edam:topic_3174,
@@ -360152,7 +377922,7 @@ PhANNs predicts the structural class of a phage ORF by running an artificial neu
     sc:url "http://edwards.sdsu.edu/phanns" .
 
 <https://bio.tools/phantasus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3170,
@@ -360175,7 +377945,7 @@ PhANNs predicts the structural class of a phage ORF by running an artificial neu
     biotools:primaryContact "Alexey Sergushichev" .
 
 <https://bio.tools/phantom> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3053,
@@ -360193,24 +377963,30 @@ PhANNs predicts the structural class of a phage ORF by running an artificial neu
 
 <https://bio.tools/phantompeakqualtools> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1383" ;
-            sc:name "Sequence alignment (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1383" ],
+            sc:additionalType "http://edamontology.org/data_1383" ;
+            sc:encodingFormat "http://edamontology.org/format_3585" ;
+            sc:name "Sequence alignment (nucleic acid)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0906" ;
-            sc:name "Protein interaction data" ;
-            sc:sameAs "http://edamontology.org/data_0906" ] ;
+            sc:additionalType "http://edamontology.org/data_0906" ;
+            sc:encodingFormat "http://edamontology.org/format_3585" ;
+            sc:name "Protein interaction data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0867" ;
-            sc:name "Sequence alignment report" ;
-            sc:sameAs "http://edamontology.org/data_0867" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0867" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Sequence alignment report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3169,
         edam:topic_3179 ;
-    sc:citation <https://doi.org/10.1534/g3.113.008680>,
+    sc:citation <https://doi.org/10.1038/nbt.1508>,
+        <https://doi.org/10.1101/gr.136184.111>,
+        <https://doi.org/10.1534/g3.113.008680>,
+        "pmcid:PMC2597701",
+        "pmcid:PMC3431496",
         "pmcid:PMC3931556",
+        "pubmed:19029915",
+        "pubmed:22955991",
         "pubmed:3931556" ;
     sc:description "This package computes quick but highly informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to obtain robust estimates of the predominant fragment length or characteristic tag shift values in these assays." ;
     sc:featureList edam:operation_3218,
@@ -360224,7 +378000,7 @@ PhANNs predicts the structural class of a phage ORF by running an artificial neu
     biotools:primaryContact "Anshul Kundaje" .
 
 <https://bio.tools/pharaoh-multi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3168 ;
@@ -360239,7 +378015,7 @@ PhANNs predicts the structural class of a phage ORF by running an artificial neu
     biotools:primaryContact "Sungyoung Lee" .
 
 <https://bio.tools/pharmacodb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Library",
         "Web application" ;
@@ -360269,7 +378045,7 @@ PhANNs predicts the structural class of a phage ORF by running an artificial neu
     sc:url "https://pharmacodb.ca" .
 
 <https://bio.tools/pharmacogx> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0202,
@@ -360290,7 +378066,7 @@ PhANNs predicts the structural class of a phage ORF by running an artificial neu
     biotools:primaryContact <http://orcid.org/0000-0002-7684-0079> .
 
 <https://bio.tools/pharmagist> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0130,
@@ -360309,8 +378085,30 @@ PhANNs predicts the structural class of a phage ORF by running an artificial neu
     sc:url "http://bioinfo3d.cs.tau.ac.il/PharmaGist" ;
     biotools:primaryContact "PharmaGist Administrator" .
 
+<https://bio.tools/pharmcat> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1916" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Alignment" ] ;
+    bsc:output [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workflow" ;
+    sc:applicationSubCategory edam:topic_3577 ;
+    sc:citation <https://doi.org/10.1002/cpt.928> ;
+    sc:description "A tool to extract all CPIC guideline gene variants from a genetic dataset (represented as a VCF file), interpret the variant alleles, and generate a report." ;
+    sc:featureList edam:operation_0004 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MPL-2.0" ;
+    sc:name "PharmCAT" ;
+    sc:softwareHelp <https://pharmcat.org/technical-docs/> ;
+    sc:softwareVersion "1.6.0" ;
+    sc:url "https://pharmcat.org/" .
+
 <https://bio.tools/pharmd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0176,
         edam:topic_2275,
         edam:topic_3343 ;
@@ -360328,10 +378126,9 @@ PhANNs predicts the structural class of a phage ORF by running an artificial neu
 
 <https://bio.tools/pharmde> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2301" ;
-            sc:name "SMILES string" ;
-            sc:sameAs "http://edamontology.org/data_2301" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2301" ;
+            sc:name "SMILES string" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_3068,
@@ -360352,16 +378149,40 @@ PhANNs predicts the structural class of a phage ORF by running an artificial neu
     sc:softwareHelp <https://pharmde.computpharm.org/home/help> ;
     sc:url "https://pharmde.computpharm.org" .
 
+<https://bio.tools/pharmebinet> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0202,
+        edam:topic_0602,
+        edam:topic_0634,
+        edam:topic_3071,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1038/S41597-022-01510-3>,
+        "pmcid:PMC9276653",
+        "pubmed:35821017" ;
+    sc:description "The heterogeneous pharmacological medical biochemical network PharMeBINet." ;
+    sc:featureList edam:operation_1812,
+        edam:operation_2429,
+        edam:operation_3196,
+        edam:operation_3431 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "PharMeBINet" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://pharmebi.net" .
+
 <https://bio.tools/pharmgkb> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2649" ;
-            sc:name "PharmGKB ID" ;
-            sc:sameAs "http://edamontology.org/data_2649" ] ;
+            sc:additionalType "http://edamontology.org/data_2649" ;
+            sc:name "PharmGKB ID" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0916" ;
-            sc:name "Gene report" ;
-            sc:sameAs "http://edamontology.org/data_0916" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0916" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Gene report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0202,
@@ -360384,7 +378205,7 @@ PhANNs predicts the structural class of a phage ORF by running an artificial neu
     sc:url "http://www.pharmgkb.org" .
 
 <https://bio.tools/pharmmapper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0209,
@@ -360398,7 +378219,7 @@ PhANNs predicts the structural class of a phage ORF by running an artificial neu
     sc:url "http://59.78.96.61/pharmmapper" .
 
 <https://bio.tools/pharmmapper-drug> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2275,
@@ -360416,7 +378237,7 @@ PhANNs predicts the structural class of a phage ORF by running an artificial neu
     sc:url "http://lilab.ecust.edu.cn/pharmmapper/" .
 
 <https://bio.tools/pharmosome> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0632,
         edam:topic_0634,
@@ -360434,8 +378255,28 @@ Today’s single nucleotide polymorphism (SNP) databases are limited to a narrow
     sc:name "Pharmosome" ;
     sc:url "https://github.com/peterhabib/Pharmosome_Web" .
 
+<https://bio.tools/pharmrf> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_2275,
+        edam:topic_2830,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1002/JCC.26840>,
+        "pubmed:35301752" ;
+    sc:description "A machine-learning scoring function to identify the best protein-ligand complexes for structure-based pharmacophore screening with high enrichments." ;
+    sc:featureList edam:operation_3501,
+        edam:operation_3938 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "PharmRF" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://github.com/Prasanth-Kumar87/PharmRF/blob/master/Manual_PharmRF_SF.pdf> ;
+    sc:url "https://github.com/Prasanth-Kumar87/PharmRF" .
+
 <https://bio.tools/pharmsd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0209,
         edam:topic_3318,
@@ -360449,8 +378290,33 @@ Today’s single nucleotide polymorphism (SNP) databases are limited to a narrow
     sc:url "http://pharmsd.computpharm.org" ;
     biotools:primaryContact "Defang Ouyang" .
 
+<https://bio.tools/pharmvip> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0199,
+        edam:topic_0208,
+        edam:topic_0625,
+        edam:topic_3168,
+        edam:topic_3375 ;
+    sc:citation <https://doi.org/10.3390/JPM11111230>,
+        "pmcid:PMC8618518",
+        "pubmed:34834582" ;
+    sc:description "A Web-Based Tool for Pharmacogenomic Variant Analysis and Interpretation." ;
+    sc:featureList edam:operation_0331,
+        edam:operation_3196,
+        edam:operation_3226,
+        edam:operation_3227,
+        edam:operation_3695 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "PharmVIP" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://pharmvip.nbt.or.th" .
+
 <https://bio.tools/pharos> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
         edam:topic_0625,
@@ -360470,10 +378336,10 @@ You are using an outdated browser. Please upgrade your browser to improve your e
 
 <https://bio.tools/pharp> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0919" ;
-            sc:name "Chromosome report" ;
-            sc:sameAs "http://edamontology.org/data_0919" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0919" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Chromosome report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0625,
@@ -360497,7 +378363,7 @@ You are using an outdated browser. Please upgrade your browser to improve your e
     sc:url "http://alphaindex.zju.edu.cn/PHARP/index.php" .
 
 <https://bio.tools/phase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3053 ;
@@ -360513,7 +378379,7 @@ You are using an outdated browser. Please upgrade your browser to improve your e
     sc:url "http://stephenslab.uchicago.edu/software.html#phase" .
 
 <https://bio.tools/phasebook> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0625 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btu859>,
@@ -360530,24 +378396,49 @@ You are using an outdated browser. Please upgrade your browser to improve your e
     sc:url "http://www.giga.ulg.ac.be/cms/c_20703/en/unit-of-animal-genomics-software" ;
     biotools:primaryContact <http://orcid.org/0000-0003-1637-1706> .
 
+<https://bio.tools/phasebook_haplotype> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_0196,
+        edam:topic_2885,
+        edam:topic_3168,
+        edam:topic_3577 ;
+    sc:citation <https://doi.org/10.1186/S13059-021-02512-X>,
+        "pmcid:PMC8549298",
+        "pubmed:34706745" ;
+    sc:description "Haplotype aware de novo assembly of diploid genome from long reads" ;
+    sc:featureList edam:operation_0484,
+        edam:operation_0487,
+        edam:operation_0524,
+        edam:operation_0525,
+        edam:operation_3192 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "phasebook" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/phasebook/phasebook" .
+
 <https://bio.tools/phaseme> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2526" ;
-            sc:name "Text data" ;
-            sc:sameAs "http://edamontology.org/data_2526" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2526" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Text data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -360563,7 +378454,7 @@ You are using an outdated browser. Please upgrade your browser to improve your e
     sc:url "https://github.com/smajidian/phaseme" .
 
 <https://bio.tools/phasepy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:citation <https://doi.org/10.1002/JCC.26405>,
         "pubmed:32871019" ;
     sc:description """A Python based framework for fluid phase equilibria and interfacial properties computation.
@@ -360574,7 +378465,7 @@ Phasepy is a Python based package for fluid phase equilibria and interfacial pro
     sc:url "https://github.com/gustavochm/phasepy" .
 
 <https://bio.tools/phaser> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_1317 ;
@@ -360592,7 +378483,7 @@ Phasepy is a Python based package for fluid phase equilibria and interfacial pro
     sc:url "http://www.phaser.cimr.cam.ac.uk" .
 
 <https://bio.tools/phasetank> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0659,
@@ -360606,22 +378497,8 @@ Phasepy is a Python based package for fluid phase equilibria and interfacial pro
     sc:softwareHelp <http://phasetank.sourceforge.net/user_manual.pdf> ;
     sc:url "http://phasetank.sourceforge.net/" .
 
-<https://bio.tools/phasing> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0196,
-        edam:topic_3518,
-        edam:topic_3673 ;
-    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTZ329>,
-        "pmcid:PMC6612846",
-        "pubmed:31510646" ;
-    sc:description "> LOW CONFIDENCE! | > CORRECT NAME OF TOOL COULD ALSO BE 'integrated phasing', 'IMPLEMENTATION:Code', '3-6-fold', 'Hi-C' | Integrating read-based and population-based phasing for dense and accurate haplotyping of individual genomes | This repository holds the source code and data files for the paper Integrating read-based and population-based phasing for dense and accurate haplotyping of individual genomes\", Bioinformatics 2019 (proceedings of ISMB/ECCB 2019) | Slides from the ISMB talk are available" ;
-    sc:featureList edam:operation_0487,
-        edam:operation_3196,
-        edam:operation_3454 ;
-    sc:name "phasing" ;
-    sc:url "https://github.com/vibansal/IntegratedPhasing" .
-
 <https://bio.tools/phasirnanalyzer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Bioinformatics portal",
         "Script",
         "Web application" ;
@@ -360640,7 +378517,7 @@ Phasepy is a Python based package for fluid phase equilibria and interfacial pro
     sc:url "https://cbi.njau.edu.cn/PPSA/" .
 
 <https://bio.tools/phast> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0622,
@@ -360658,7 +378535,7 @@ Phasepy is a Python based package for fluid phase equilibria and interfacial pro
     biotools:primaryContact "Contact Form" .
 
 <https://bio.tools/phaster> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0622,
@@ -360678,7 +378555,7 @@ Phasepy is a Python based package for fluid phase equilibria and interfacial pro
     sc:url "http://phaster.ca/" .
 
 <https://bio.tools/phastsim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0199,
@@ -360696,14 +378573,14 @@ Phasepy is a Python based package for fluid phase equilibria and interfacial pro
 
 <https://bio.tools/phd-snp> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2974" ;
-            sc:name "Protein sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_2974" ] ;
+            sc:additionalType "http://edamontology.org/data_2974" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence (raw)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1622" ;
-            sc:name "Disease report" ;
-            sc:sameAs "http://edamontology.org/data_1622" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1622" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Disease report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2885 ;
     sc:citation <https://doi.org/10.1002/humu.22102> ;
@@ -360721,7 +378598,7 @@ Phasepy is a Python based package for fluid phase equilibria and interfacial pro
         "Rita Casadio" .
 
 <https://bio.tools/phd-snpg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0196,
@@ -360739,7 +378616,7 @@ Phasepy is a Python based package for fluid phase equilibria and interfacial pro
     sc:url "http://snps.biofold.org/phd-snpg" .
 
 <https://bio.tools/phdcleav> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0659 ;
@@ -360751,18 +378628,18 @@ Phasepy is a Python based package for fluid phase equilibria and interfacial pro
         "Mac",
         "Windows" ;
     sc:softwareHelp <http://crdd.osdd.net/raghava//phdcleav/algorithm.html> ;
-    sc:url "http://www.imtech.res.in/raghava/phdcleav/" .
+    sc:url "http://webs.iiitd.edu.in/raghava/phdcleav/" .
 
 <https://bio.tools/phdhtm> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2886" ;
-            sc:name "Protein sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2886" ] ;
+            sc:additionalType "http://edamontology.org/data_2886" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0896" ;
-            sc:name "Protein report" ;
-            sc:sameAs "http://edamontology.org/data_0896" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0896" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Protein report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
@@ -360785,8 +378662,27 @@ Phasepy is a Python based package for fluid phase equilibria and interfacial pro
     sc:softwareVersion "1.0.42" ;
     sc:url "http://ppopen.informatik.tu-muenchen.de/" .
 
+<https://bio.tools/phdmf> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0622,
+        edam:topic_3071,
+        edam:topic_3473 ;
+    sc:citation <https://doi.org/10.3389/FGENE.2022.877870>,
+        "pmcid:PMC9043280",
+        "pubmed:35495148" ;
+    sc:description "A Flexible and Scalable Personal Health Data Management Framework Based on Blockchain Technology." ;
+    sc:featureList edam:operation_3436,
+        edam:operation_3760 ;
+    sc:isAccessibleForFree true ;
+    sc:name "PHDMF" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://hvic.biosino.org/PHDMF" .
+
 <https://bio.tools/phdseeker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0602,
         edam:topic_0821,
@@ -360807,7 +378703,7 @@ Pheromone Directed Seeker (PhDSeeker) is a tool based on a bio-inspired algorith
     sc:url "https://sinc.unl.edu.ar/web-demo/phds/" .
 
 <https://bio.tools/phe2vec> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0634,
         edam:topic_3063,
@@ -360823,18 +378719,15 @@ Pheromone Directed Seeker (PhDSeeker) is a tool based on a bio-inspired algorith
 
 <https://bio.tools/pheatmap> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2082" ;
-            sc:name "Matrix" ;
-            sc:sameAs "http://edamontology.org/data_2082" ],
+            sc:additionalType "http://edamontology.org/data_2082" ;
+            sc:name "Matrix" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3111" ;
-            sc:name "Processed microarray data" ;
-            sc:sameAs "http://edamontology.org/data_3111" ] ;
+            sc:additionalType "http://edamontology.org/data_3111" ;
+            sc:name "Processed microarray data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1636" ;
-            sc:name "Heat map" ;
-            sc:sameAs "http://edamontology.org/data_1636" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1636" ;
+            sc:name "Heat map" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_3365 ;
@@ -360850,7 +378743,7 @@ Pheromone Directed Seeker (PhDSeeker) is a tool based on a bio-inspired algorith
     sc:url "http://cran.r-project.org/web/packages/pheatmap/" .
 
 <https://bio.tools/pheg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2815,
         edam:topic_3047,
@@ -360867,7 +378760,7 @@ Pheromone Directed Seeker (PhDSeeker) is a tool based on a bio-inspired algorith
     biotools:primaryContact "Feng-Biao Guo" .
 
 <https://bio.tools/phegenex> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3574 ;
@@ -360883,7 +378776,7 @@ Pheromone Directed Seeker (PhDSeeker) is a tool based on a bio-inspired algorith
     sc:url "http://phegenex-umh.cs.umn.edu:8080/PheGenEx/" .
 
 <https://bio.tools/phelige> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0203,
         edam:topic_0625,
@@ -360901,7 +378794,7 @@ Genome-wide association studies have provided a vast array of publicly available
     sc:url "https://phelige.com" .
 
 <https://bio.tools/phemd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2640,
         edam:topic_3170,
@@ -360918,7 +378811,7 @@ Genome-wide association studies have provided a vast array of publicly available
     sc:url "https://github.com/wschen/phemd" .
 
 <https://bio.tools/phemto> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0128,
@@ -360932,7 +378825,7 @@ Genome-wide association studies have provided a vast array of publicly available
     sc:url "http://phemto.orgchm.bas.bg/" .
 
 <https://bio.tools/phencards> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0218,
@@ -360949,7 +378842,7 @@ Genome-wide association studies have provided a vast array of publicly available
     biotools:primaryContact <https://orcid.org/0000-0002-5585-982X> .
 
 <https://bio.tools/phenclust> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0625,
@@ -360971,7 +378864,7 @@ Genome-wide association studies have provided a vast array of publicly available
     sc:url "https://github.com/jenwilson521/PhenClust_Supplemental" .
 
 <https://bio.tools/phenebank> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0218,
@@ -360992,26 +378885,21 @@ Genome-wide association studies have provided a vast array of publicly available
 
 <https://bio.tools/phenetic> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Gene expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ],
+            sc:additionalType "http://edamontology.org/data_2295" ;
+            sc:name "Gene ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2295" ;
-            sc:name "Gene ID" ;
-            sc:sameAs "http://edamontology.org/data_2295" ],
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:name "Pathway or network" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ] ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:name "Gene expression data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ],
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:name "Pathway or network" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0916" ;
-            sc:name "Gene report" ;
-            sc:sameAs "http://edamontology.org/data_0916" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0916" ;
+            sc:name "Gene report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602 ;
@@ -361029,26 +378917,21 @@ Genome-wide association studies have provided a vast array of publicly available
 
 <https://bio.tools/phenetic_eqtl> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1025" ;
-            sc:name "Gene identifier" ;
-            sc:sameAs "http://edamontology.org/data_1025" ],
+            sc:additionalType "http://edamontology.org/data_1025" ;
+            sc:name "Gene identifier" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Gene expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ],
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:name "Gene expression data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ] ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:name "Pathway or network" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ],
+            sc:additionalType "http://edamontology.org/data_0916" ;
+            sc:name "Gene report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0916" ;
-            sc:name "Gene report" ;
-            sc:sameAs "http://edamontology.org/data_0916" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:name "Pathway or network" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602 ;
@@ -361066,8 +378949,29 @@ Genome-wide association studies have provided a vast array of publicly available
     sc:softwareVersion "1" ;
     sc:url "http://bioinformatics.intec.ugent.be/phenetic_eqtl/index.html" .
 
+<https://bio.tools/phengenvar> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Desktop application" ;
+    sc:applicationSubCategory edam:topic_0199,
+        edam:topic_0622,
+        edam:topic_0625,
+        edam:topic_3577,
+        edam:topic_3676 ;
+    sc:citation <https://doi.org/10.3390/JPM12060959>,
+        "pmcid:PMC9224645",
+        "pubmed:35743744" ;
+    sc:description "A User-Friendly Genetic Variant Detection and Visualization Tool for Precision Medicine." ;
+    sc:featureList edam:operation_3196,
+        edam:operation_3208,
+        edam:operation_3227,
+        edam:operation_3283 ;
+    sc:isAccessibleForFree true ;
+    sc:name "PhenGenVar" ;
+    sc:operatingSystem "Windows" ;
+    sc:url "http://dblab.hallym.ac.kr/PhenGenVar" .
+
 <https://bio.tools/pheniqs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_0769,
@@ -361086,13 +378990,18 @@ Genome-wide association studies have provided a vast array of publicly available
     biotools:primaryContact "Kristin C. Gunsalus" .
 
 <https://bio.tools/phenix> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_1317,
         edam:topic_3473,
         edam:topic_3569 ;
-    sc:citation <https://doi.org/10.1107/S0907444909052925> ;
+    sc:citation <https://doi.org/10.1107/S0907444909052925>,
+        <https://doi.org/10.1107/S2059798319011471>,
+        <https://doi.org/10.1107/s0907444902016657>,
+        "pmcid:PMC6778852",
+        "pubmed:12393927",
+        "pubmed:31588918" ;
     sc:description "Software suite for the automated determination of macromolecular structures using X-ray crystallography and other methods." ;
     sc:featureList edam:operation_2409,
         edam:operation_2480,
@@ -361108,7 +379017,7 @@ Genome-wide association studies have provided a vast array of publicly available
     sc:url "http://www.phenix-online.org/" .
 
 <https://bio.tools/phenoSEED> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3077,
         edam:topic_3382 ;
@@ -361121,7 +379030,7 @@ Genome-wide association studies have provided a vast array of publicly available
     sc:url "https://gitlab.com/usask-speclab/phenoseed" .
 
 <https://bio.tools/phenobook> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3053,
@@ -361141,7 +379050,7 @@ It can be easily implemented in collaborative research and development projects
     biotools:primaryContact "Leonardo S. Vanzetti" .
 
 <https://bio.tools/phenocomp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0634,
         edam:topic_3170,
@@ -361160,7 +379069,7 @@ PhenoComp is an algorithm to identify population-level differential genes in one
     sc:url "https://github.com/XJJ-student/PhenoComp" .
 
 <https://bio.tools/phenodigm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_2815,
@@ -361180,14 +379089,14 @@ PhenoComp is an algorithm to identify population-level differential genes in one
 
 <https://bio.tools/phenodist> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3424" ;
-            sc:name "Raw image" ;
-            sc:sameAs "http://edamontology.org/data_3424" ] ;
+            sc:additionalType "http://edamontology.org/data_3424" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Raw image" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2855" ;
-            sc:name "Distance matrix" ;
-            sc:sameAs "http://edamontology.org/data_2855" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2855" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "Distance matrix" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0085,
@@ -361215,7 +379124,7 @@ PhenoComp is an algorithm to identify population-level differential genes in one
     biotools:primaryContact "Xian Zhang" .
 
 <https://bio.tools/phenoexam> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0625,
@@ -361235,7 +379144,7 @@ PhenoComp is an algorithm to identify population-level differential genes in one
     sc:url "https://snca.atica.um.es/PhenoExamWeb/" .
 
 <https://bio.tools/phenofam> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3168,
@@ -361252,7 +379161,7 @@ PhenoComp is an algorithm to identify population-level differential genes in one
     sc:url "http://sourceforge.net/projects/phenofam/" .
 
 <https://bio.tools/phenofun> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3071,
         edam:topic_3382 ;
@@ -361267,7 +379176,7 @@ PhenoComp is an algorithm to identify population-level differential genes in one
     biotools:primaryContact "Annette Menzel" .
 
 <https://bio.tools/phenogenon> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0625,
         edam:topic_3325,
@@ -361294,7 +379203,7 @@ The vcf file should include all the samples that would be tested in Phenogenon.
     sc:url "https://phenogenon.phenopolis.org" .
 
 <https://bio.tools/phenohm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0621,
@@ -361317,7 +379226,7 @@ The vcf file should include all the samples that would be tested in Phenogenon.
     biotools:primaryContact "Anil Jegga" .
 
 <https://bio.tools/phenoimage> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0780,
         edam:topic_3316,
@@ -361336,7 +379245,7 @@ PhenoImage is an open-source GUI based cross-platform solution for high-throughp
     sc:url "http://wrchr.org/phenolib/phenoimage" .
 
 <https://bio.tools/phenolyzer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0634,
@@ -361352,7 +379261,7 @@ PhenoImage is an open-source GUI based cross-platform solution for high-throughp
     sc:url "http://phenolyzer.wglab.org/" .
 
 <https://bio.tools/phenom> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0625,
@@ -361374,7 +379283,7 @@ PhenoImage is an open-source GUI based cross-platform solution for high-throughp
     biotools:primaryContact "Ke Jin" .
 
 <https://bio.tools/phenoman> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3053 ;
@@ -361390,7 +379299,7 @@ PhenoImage is an open-source GUI based cross-platform solution for high-throughp
     sc:url "https://code.google.com/p/phenoman/" .
 
 <https://bio.tools/phenomecentral> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
@@ -361416,7 +379325,7 @@ PhenoImage is an open-source GUI based cross-platform solution for high-throughp
     sc:url "https://phenomecentral.org" .
 
 <https://bio.tools/phenomenal-3d> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0780,
         edam:topic_3382 ;
@@ -361429,7 +379338,7 @@ PhenoImage is an open-source GUI based cross-platform solution for high-throughp
     sc:url "https://github.com/openalea/phenomenal" .
 
 <https://bio.tools/phenominer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0625 ;
     sc:citation <https://doi.org/10.1093/DATABASE/BAV104>,
@@ -361446,7 +379355,7 @@ PhenoImage is an open-source GUI based cross-platform solution for high-throughp
     biotools:primaryContact <http://orcid.org/0000-0002-7230-4164> .
 
 <https://bio.tools/phenomizer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3325,
@@ -361464,7 +379373,7 @@ PhenoImage is an open-source GUI based cross-platform solution for high-throughp
     sc:url "http://compbio.charite.de/phenomizer" .
 
 <https://bio.tools/phenopath> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3170 ;
@@ -361483,7 +379392,7 @@ PhenoImage is an open-source GUI based cross-platform solution for high-throughp
     biotools:primaryContact "Kieran Campbell" .
 
 <https://bio.tools/phenoplot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -361502,7 +379411,7 @@ PhenoImage is an open-source GUI based cross-platform solution for high-throughp
     biotools:primaryContact "Heba Sailem" .
 
 <https://bio.tools/phenopred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_2815,
@@ -361520,7 +379429,7 @@ PhenoImage is an open-source GUI based cross-platform solution for high-throughp
     sc:url "http://www.phenopred.org/" .
 
 <https://bio.tools/phenopype> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0625,
@@ -361536,7 +379445,7 @@ PhenoImage is an open-source GUI based cross-platform solution for high-throughp
     biotools:primaryContact "Moritz D. Lürig" .
 
 <https://bio.tools/phenosim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3053 ;
@@ -361551,7 +379460,7 @@ PhenoImage is an open-source GUI based cross-platform solution for high-throughp
     sc:url "http://evoplant.uni-hohenheim.de/downloads/" .
 
 <https://bio.tools/phenospace> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0610,
@@ -361573,7 +379482,7 @@ PhenoSpace is a Shiny application – built using the Shiny R package – that h
     sc:url "https://shiny.cefe.cnrs.fr/PhenoSpace/" .
 
 <https://bio.tools/phenotagger> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web API" ;
     sc:applicationSubCategory edam:topic_0089,
@@ -361594,7 +379503,7 @@ PhenoTagger is a hybrid method that combines dictionary and deep learning-based
     sc:url "https://github.com/ncbi-nlp/PhenoTagger" .
 
 <https://bio.tools/phenotator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_3071 ;
@@ -361614,7 +379523,7 @@ PhenoTagger is a hybrid method that combines dictionary and deep learning-based
     biotools:primaryContact "Simon Jupp" .
 
 <https://bio.tools/phenotest> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0625,
@@ -361637,7 +379546,7 @@ PhenoTagger is a hybrid method that combines dictionary and deep learning-based
     biotools:primaryContact "Evarist Planet" .
 
 <https://bio.tools/phenotips> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3063,
@@ -361658,7 +379567,7 @@ PhenoTagger is a hybrid method that combines dictionary and deep learning-based
     biotools:primaryContact "PhenoTips Support" .
 
 <https://bio.tools/phenotypesimulator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3053,
@@ -361675,7 +379584,7 @@ PhenoTagger is a hybrid method that combines dictionary and deep learning-based
     biotools:primaryContact "Hannah Meyer" .
 
 <https://bio.tools/phenoxome> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0622,
@@ -361695,7 +379604,7 @@ Phenoxome is a web-based tool developed at the Children's Hospital of Philadelph
     sc:url "https://phenoxome.chop.edu/" .
 
 <https://bio.tools/phenpath> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0602,
@@ -361719,7 +379628,7 @@ PhenPath includes a database and a tool:.
     sc:url "http://phenpath.biocomp.unibo.it" .
 
 <https://bio.tools/phensim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0625,
         edam:topic_3172,
@@ -361735,7 +379644,7 @@ PhenPath includes a database and a tool:.
     sc:url "https://phensim.atlas.dmi.unict.it/" .
 
 <https://bio.tools/phenstat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2269 ;
@@ -361756,7 +379665,7 @@ PhenPath includes a database and a tool:.
     biotools:primaryContact "Hamed Haselimashhadi" .
 
 <https://bio.tools/pheps> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -361774,7 +379683,7 @@ PhenPath includes a database and a tool:.
     sc:url "http://pheps.orgchm.bas.bg/home.html" .
 
 <https://bio.tools/pheri> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3174,
         edam:topic_3324,
@@ -361795,7 +379704,7 @@ To install this tool please use our docker image.""" ;
     sc:url "https://github.com/andynet/pheri_preprocessing" .
 
 <https://bio.tools/phesant> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0092,
@@ -361816,7 +379725,7 @@ To install this tool please use our docker image.""" ;
     biotools:primaryContact "Louise AC Millard" .
 
 <https://bio.tools/phesant-phenome> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3298 ;
     sc:citation <https://doi.org/10.1093/ije/dyx204>,
@@ -361832,7 +379741,7 @@ To install this tool please use our docker image.""" ;
     biotools:primaryContact "Louise A. C. Millard" .
 
 <https://bio.tools/phever> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0621,
@@ -361854,7 +379763,7 @@ To install this tool please use our docker image.""" ;
     biotools:primaryContact "Leonor Palmeira" .
 
 <https://bio.tools/phewas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0654,
@@ -361871,7 +379780,7 @@ To install this tool please use our docker image.""" ;
     sc:url "https://phewascatalog.org/" .
 
 <https://bio.tools/phewas-me> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2885,
         edam:topic_3298,
         edam:topic_3324,
@@ -361893,7 +379802,7 @@ Supplied are snps that have been preloaded.""" ;
     sc:url "https://prod.tbilab.org/phewas_me/" .
 
 <https://bio.tools/phewas-neuroimaging> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3316,
         edam:topic_3334,
@@ -361917,7 +379826,7 @@ The recent emergence of neuroimaging genomic databases of large healthy and dise
     sc:url "http://phewas.loni.usc.edu/phewas" .
 
 <https://bio.tools/phewas_clinical> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3298,
@@ -361934,7 +379843,7 @@ The recent emergence of neuroimaging genomic databases of large healthy and dise
     biotools:primaryContact "Leena Choi" .
 
 <https://bio.tools/phexpo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0154,
         edam:topic_0602,
@@ -361952,7 +379861,7 @@ Phexpo is an R package for enrichment analysis of phenotypes (from the Human Phe
     sc:url "https://github.com/GHLCLab/phexpo" .
 
 <https://bio.tools/phi-base> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3053 ;
@@ -361970,7 +379879,7 @@ Phexpo is an R package for enrichment analysis of phenotypes (from the Human Phe
     biotools:primaryContact "Support" .
 
 <https://bio.tools/phi-c> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0654,
@@ -361991,7 +379900,7 @@ PHi-C consists of Python3 codes for deciphering Hi-C data into polymer dynamics
     sc:url "https://github.com/soyashinkai/PHi-C" .
 
 <https://bio.tools/phigaro> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0196,
         edam:topic_0798,
@@ -362010,7 +379919,7 @@ Phigaro is a standalone command-line application that is able to detect prophage
     sc:url "https://github.com/bobeobibo/phigaro" .
 
 <https://bio.tools/philius> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154 ;
     sc:citation <https://doi.org/10.1371/journal.pcbi.1000213> ;
@@ -362021,8 +379930,30 @@ Phigaro is a standalone command-line application that is able to detect prophage
     sc:softwareHelp <https://noble.gs.washington.edu/proj/philius/README> ;
     sc:url "http://noble.gs.washington.edu/proj/philius/" .
 
+<https://bio.tools/philm2web> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0218,
+        edam:topic_0219,
+        edam:topic_0602,
+        edam:topic_3324 ;
+    sc:citation <https://doi.org/10.1093/DATABASE/BAAC042>,
+        "pmcid:PMC9248916",
+        "pubmed:35776535" ;
+    sc:description "A high-throughput database of macromolecular host-pathogen interactions on the Web." ;
+    sc:featureList edam:operation_0224,
+        edam:operation_0306,
+        edam:operation_3454 ;
+    sc:isAccessibleForFree true ;
+    sc:name "PHILM2Web" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://philm2web.live" .
+
 <https://bio.tools/philr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0084,
@@ -362044,7 +379975,7 @@ Phigaro is a standalone command-line application that is able to detect prophage
     biotools:primaryContact <http://orcid.org/0000-0002-3063-2098> .
 
 <https://bio.tools/phirbo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Script" ;
     sc:applicationSubCategory edam:topic_3168,
@@ -362066,7 +379997,7 @@ Phirbo estimates the phage-host relationship by comparing the content and order
     sc:url "https://github.com/aziele/phirbo" .
 
 <https://bio.tools/phire> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0204,
@@ -362085,7 +380016,7 @@ Phirbo estimates the phage-host relationship by comparing the content and order
     biotools:primaryContact "Rob Lavigne" .
 
 <https://bio.tools/phiscs-bnb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0199,
         edam:topic_0622,
@@ -362102,7 +380033,7 @@ PhISCS-BnB is a fast tool for reconstructing the perfect tumor phylogeny using s
     sc:url "https://github.com/algo-cancer/PhISCS-BnB" .
 
 <https://bio.tools/phisdetector> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_3299,
         edam:topic_3697,
@@ -362124,7 +380055,7 @@ PHISDetector receives bacterial or virus genomic sequences in GenBank or FASTA f
     sc:url "http://www.microbiome-bigdata.com/PHISDetector/" .
 
 <https://bio.tools/phisite> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0602,
@@ -362144,10 +380075,10 @@ PHISDetector receives bacterial or virus genomic sequences in GenBank or FASTA f
 
 <https://bio.tools/phist> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_3174,
@@ -362165,8 +380096,30 @@ PHISDetector receives bacterial or virus genomic sequences in GenBank or FASTA f
         "Windows" ;
     sc:url "https://github.com/refresh-bio/phist" .
 
+<https://bio.tools/phitestr> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0634,
+        edam:topic_3300,
+        edam:topic_3308,
+        edam:topic_3500 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC130>,
+        "pmcid:PMC9048696",
+        "pubmed:35238346" ;
+    sc:description "Phitest for Analyzing the Homogeneity of Single-cell Populations." ;
+    sc:featureList edam:operation_3223,
+        edam:operation_3432 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "PhitestR" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://cran.r-project.org/web/packages/PhitestR/PhitestR.pdf> ;
+    sc:url "https://github.com/Vivianstats/PhitestR" .
+
 <https://bio.tools/phla3d> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2275,
         edam:topic_3047,
         edam:topic_3421 ;
@@ -362189,7 +380142,7 @@ constructed by using homology modeling.""" ;
     sc:url "http://www.phla3d.com.br" .
 
 <https://bio.tools/phlawd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0196,
@@ -362207,22 +380160,19 @@ constructed by using homology modeling.""" ;
 
 <https://bio.tools/phmmer> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3671" ;
-            sc:name "Text" ;
-            sc:sameAs "http://edamontology.org/data_3671" ] ;
+            sc:additionalType "http://edamontology.org/data_3671" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Text" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3028" ;
-            sc:name "Taxonomy" ;
-            sc:sameAs "http://edamontology.org/data_3028" ],
+            sc:additionalType "http://edamontology.org/data_2085" ;
+            sc:name "Structure report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2085" ;
-            sc:name "Structure report" ;
-            sc:sameAs "http://edamontology.org/data_2085" ],
+            sc:additionalType "http://edamontology.org/data_1394" ;
+            sc:name "Alignment score or penalty" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1394" ;
-            sc:name "Alignment score or penalty" ;
-            sc:sameAs "http://edamontology.org/data_1394" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3028" ;
+            sc:name "Taxonomy" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -362248,14 +380198,12 @@ constructed by using homology modeling.""" ;
 
 <https://bio.tools/phobius> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:name "Protein sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:name "Protein features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0160,
@@ -362263,12 +380211,13 @@ constructed by using homology modeling.""" ;
         edam:topic_0820,
         edam:topic_3510 ;
     sc:author "Erik Sonnhammer",
-        "Web Production" ;
-    sc:citation <https://doi.org/10.1016/j.jmb.2004.03.016> ;
+        "Job Dispatcher" ;
+    sc:citation <https://doi.org/10.1016/j.jmb.2004.03.016>,
+        <https://doi.org/10.1093/nar/gkac240> ;
     sc:description "Predict transmembrane topology and signal peptides from the amino acid sequence of a protein." ;
     sc:featureList edam:operation_0269,
         edam:operation_0418 ;
-    sc:name "Phobius" ;
+    sc:name "Phobius (EBI)" ;
     sc:operatingSystem "Linux",
         "Mac",
         "Windows" ;
@@ -362278,10 +380227,10 @@ constructed by using homology modeling.""" ;
         <http://www.ebi.ac.uk/about/terms-of-use> ;
     sc:softwareVersion "1" ;
     sc:url "http://www.ebi.ac.uk/Tools/pfa/phobius/" ;
-    biotools:primaryContact "Web Production" .
+    biotools:primaryContact "Job Dispatcher Team" .
 
 <https://bio.tools/phobius_api> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API" ;
     sc:applicationSubCategory edam:topic_0736,
         edam:topic_1775,
@@ -362299,7 +380248,7 @@ constructed by using homology modeling.""" ;
     sc:url "http://www.ebi.ac.uk/Tools/webservices/services/pfa/phobius_rest" .
 
 <https://bio.tools/phobos> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0632,
         edam:topic_0654 ;
@@ -362314,7 +380263,7 @@ constructed by using homology modeling.""" ;
     sc:url "http://www.ruhr-uni-bochum.de/spezzoo/cm/cm_phobos.htm" .
 
 <https://bio.tools/phog> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3293,
@@ -362330,7 +380279,7 @@ constructed by using homology modeling.""" ;
     sc:url "http://phylofacts.berkeley.edu/orthologs/" .
 
 <https://bio.tools/phogly-pseaac> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_3510 ;
@@ -362346,7 +380295,7 @@ constructed by using homology modeling.""" ;
     sc:url "http://app.aporc.org/Phogly-PseAAC/" .
 
 <https://bio.tools/phoglystruct> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0121,
         edam:topic_0154,
@@ -362365,7 +380314,7 @@ The codes in this repository are in two categories. One is based on commercial s
     sc:url "https://github.com/abelavit/PhoglyStruct" .
 
 <https://bio.tools/phonbank> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3068,
         edam:topic_3071 ;
@@ -362385,7 +380334,7 @@ Phon is a software program that supports the building of textual and phonologica
     sc:url "https://phonbank.talkbank.org" .
 
 <https://bio.tools/phonemes> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0601,
@@ -362402,7 +380351,7 @@ Phon is a software program that supports the building of textual and phonologica
     sc:url "https://github.com/saezlab/PHONEMeS" .
 
 <https://bio.tools/phoni> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_2269,
@@ -362419,7 +380368,7 @@ Phon is a software program that supports the building of textual and phonologica
     sc:url "https://github.com/koeppl/phoni" .
 
 <https://bio.tools/phos3d> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0123 ;
@@ -362435,7 +380384,7 @@ Phon is a software program that supports the building of textual and phonologica
     sc:url "http://phos3d.mpimp-golm.mpg.de/" .
 
 <https://bio.tools/phoscalc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0123,
         edam:topic_2814 ;
@@ -362450,7 +380399,7 @@ Phon is a software program that supports the building of textual and phonologica
     sc:url "https://github.com/danmaclean/phoscalc" .
 
 <https://bio.tools/phoscan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0123,
         edam:topic_0601,
@@ -362467,7 +380416,7 @@ Phon is a software program that supports the building of textual and phonologica
     sc:url "http://bioinfo.au.tsinghua.edu.cn/phoscan/" .
 
 <https://bio.tools/phosfer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0780 ;
@@ -362481,7 +380430,7 @@ Phon is a software program that supports the building of textual and phonologica
     sc:url "http://saphire.usask.ca/saphire/phosfer/index.html" .
 
 <https://bio.tools/phosfinder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0166 ;
     sc:citation <https://doi.org/10.1093/nar/gkr389> ;
@@ -362497,7 +380446,7 @@ Phon is a software program that supports the building of textual and phonologica
     sc:url "http://phosfinder.bio.uniroma2.it" .
 
 <https://bio.tools/phosida> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0121,
@@ -362519,7 +380468,7 @@ Phon is a software program that supports the building of textual and phonologica
     biotools:primaryContact "Matthias Mann" .
 
 <https://bio.tools/phosidn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0601,
@@ -362537,7 +380486,7 @@ Phon is a software program that supports the building of textual and phonologica
     sc:url "https://github.com/ustchangyuanyang/PhosIDN" .
 
 <https://bio.tools/phosnetconstruct> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0128,
@@ -362554,7 +380503,7 @@ Phon is a software program that supports the building of textual and phonologica
     sc:url "http://www.nii.ac.in/phosnetconstruct.html" .
 
 <https://bio.tools/phosphat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -362576,14 +380525,12 @@ Phon is a software program that supports the building of textual and phonologica
 
 <https://bio.tools/phospho3d> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ] ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:name "Protein structure" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:name "Protein features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0123,
         edam:topic_0166 ;
@@ -362602,30 +380549,27 @@ Phon is a software program that supports the building of textual and phonologica
 
 <https://bio.tools/phosphoelm> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1096" ;
-            sc:name "Sequence accession (protein)" ;
-            sc:sameAs "http://edamontology.org/data_1096" ],
+            sc:additionalType "http://edamontology.org/data_1096" ;
+            sc:name "Sequence accession (protein)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1009" ;
-            sc:name "Protein name" ;
-            sc:sameAs "http://edamontology.org/data_1009" ],
+            sc:additionalType "http://edamontology.org/data_2775" ;
+            sc:name "Kinase name" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2775" ;
-            sc:name "Kinase name" ;
-            sc:sameAs "http://edamontology.org/data_2775" ] ;
+            sc:additionalType "http://edamontology.org/data_1009" ;
+            sc:name "Protein name" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2071" ;
-            sc:name "Sequence motif (protein)" ;
-            sc:sameAs "http://edamontology.org/data_2071" ],
+            sc:additionalType "http://edamontology.org/data_2071" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Sequence motif (protein)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2071" ;
-            sc:name "Sequence motif (protein)" ;
-            sc:sameAs "http://edamontology.org/data_2071" ],
+            sc:additionalType "http://edamontology.org/data_2071" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Sequence motif (protein)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2071" ;
-            sc:name "Sequence motif (protein)" ;
-            sc:sameAs "http://edamontology.org/data_2071" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2071" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Sequence motif (protein)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0601 ;
     sc:citation <https://doi.org/10.1093/nar/gkq1104>,
@@ -362642,7 +380586,7 @@ Phon is a software program that supports the building of textual and phonologica
     biotools:primaryContact <http://orcid.org/0000-0003-0657-5166> .
 
 <https://bio.tools/phosphomatics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0601,
         edam:topic_0602,
@@ -362663,7 +380607,7 @@ This may take a minute or two depending on the size of your input data and our s
     sc:url "https://phosphomatics.com" .
 
 <https://bio.tools/phosphonormalizer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_2269 ;
@@ -362683,7 +380627,7 @@ This may take a minute or two depending on the size of your input data and our s
     biotools:primaryContact "Sohrab Saraei" .
 
 <https://bio.tools/phosphopick> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0601 ;
@@ -362699,7 +380643,7 @@ This may take a minute or two depending on the size of your input data and our s
     sc:url "http://bioinf.scmb.uq.edu.au/phosphopick/phosphopick" .
 
 <https://bio.tools/phosphopredict> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
@@ -362718,7 +380662,7 @@ This may take a minute or two depending on the size of your input data and our s
     biotools:primaryContact "Support" .
 
 <https://bio.tools/phosphortholog> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0123,
@@ -362740,7 +380684,7 @@ This may take a minute or two depending on the size of your input data and our s
     biotools:primaryContact "Jean Yee Hwa Yang" .
 
 <https://bio.tools/phosphositeanalyzer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0121,
@@ -362754,7 +380698,7 @@ This may take a minute or two depending on the size of your input data and our s
     sc:url "http://sourceforge.net/projects/phosphosite/" .
 
 <https://bio.tools/phosphositeplus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0601,
@@ -362774,7 +380718,7 @@ This may take a minute or two depending on the size of your input data and our s
     sc:url "https://www.phosphosite.org" .
 
 <https://bio.tools/phosphosvm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
@@ -362790,8 +380734,61 @@ This may take a minute or two depending on the size of your input data and our s
     sc:softwareHelp <http://sysbio.unl.edu/PhosphoSVM/download.php> ;
     sc:url "http://sysbio.unl.edu/PhosphoSVM/" .
 
+<https://bio.tools/phospir> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0080,
+        edam:topic_0121,
+        edam:topic_0601,
+        edam:topic_0769,
+        edam:topic_3520 ;
+    sc:citation <https://doi.org/10.1093/BIB/BBAB510>,
+        "pmcid:PMC8787428",
+        "pubmed:34882763" ;
+    sc:description "An automated phosphoproteomic pipeline in R." ;
+    sc:featureList edam:operation_2939,
+        edam:operation_3223,
+        edam:operation_3501,
+        edam:operation_3557,
+        edam:operation_3891 ;
+    sc:isAccessibleForFree true ;
+    sc:license "CC-BY-NC-4.0" ;
+    sc:name "PhosPiR" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/TCB-yehong/PhosPiR" .
+
+<https://bio.tools/phosprof> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2899" ;
+            sc:name "Drug name" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0601,
+        edam:topic_0602,
+        edam:topic_0634,
+        edam:topic_2229 ;
+    sc:citation <https://doi.org/10.1093/DATABASE/BAAC072>,
+        "pmcid:PMC9394491",
+        "pubmed:35994309" ;
+    sc:description "Pathway analysis database of drug response based on phosphorylation activity measurements." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_0417,
+        edam:operation_0533,
+        edam:operation_3926,
+        edam:operation_4009 ;
+    sc:isAccessibleForFree true ;
+    sc:name "Phosprof" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://phosprof.medals.jp/static/guide/Phosprof_UserGuide_ver1.1.pdf> ;
+    sc:url "https://phosprof.medals.jp/" .
+
 <https://bio.tools/phosr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
         edam:topic_0602,
@@ -362811,7 +380808,7 @@ PhosR is a package for the comprehensive analysis of phosphoproteomic data. Ther
     sc:url "https://github.com/PYangLab/PhosR" .
 
 <https://bio.tools/phossnp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0625,
@@ -362836,7 +380833,7 @@ PhosR is a package for the comprehensive analysis of phosphoproteomic data. Ther
         "Zhaolei Zhang" .
 
 <https://bio.tools/phostryp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0160 ;
     sc:citation <https://doi.org/10.1186/1471-2164-12-614> ;
@@ -362851,8 +380848,33 @@ PhosR is a package for the comprehensive analysis of phosphoproteomic data. Ther
     sc:softwareVersion "1" ;
     sc:url "http://phostryp.bio.uniroma2.it" .
 
+<https://bio.tools/phosvardeep> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Protein sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0160,
+        edam:topic_3063,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.7717/PEERJ.12847>,
+        "pmcid:PMC8929166",
+        "pubmed:35310161" ;
+    sc:description "Deep-learning based prediction of phospho-variants using sequence information." ;
+    sc:featureList edam:operation_0253,
+        edam:operation_0331,
+        edam:operation_3092 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "PhosVarDeep" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/lisalikegaga/PhosVarDeep" .
+
 <https://bio.tools/photochemcad> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3068,
         edam:topic_3071 ;
@@ -362870,7 +380892,7 @@ PhotochemCAD™ is a program of calculational modules and accompanying database
     sc:url "http://www.photochemcad.com" .
 
 <https://bio.tools/photomodplus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_3299,
         edam:topic_3474 ;
@@ -362889,7 +380911,7 @@ PhotoModPlus is a genome neighborhood-based platform for exploring photosyntheti
     sc:url "http://bicep.kmutt.ac.th/photomod" .
 
 <https://bio.tools/photon-diffusion-simulator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3306,
         edam:topic_3314,
@@ -362906,7 +380928,7 @@ PhotoModPlus is a genome neighborhood-based platform for exploring photosyntheti
     biotools:primaryContact "Rex Cheung" .
 
 <https://bio.tools/photonai> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_0769,
@@ -362929,7 +380951,7 @@ PhotoModPlus is a genome neighborhood-based platform for exploring photosyntheti
     sc:url "http://www.photon-ai.com" .
 
 <https://bio.tools/photonlabeler> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_3382,
         edam:topic_3474 ;
@@ -362943,7 +380965,7 @@ ATLAS Photon Labeler. Contribute to Oht0nger/PhoLabeler development by creating
     sc:url "https://github.com/Oht0nger/PhoLabeler/releases/tag/v1.0" .
 
 <https://bio.tools/phplabware> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3489 ;
     sc:description "It is a web-driven database management system. Data-entry takes place in forms, which can be altered using phplabware’s plugin mechanism. Search results can be output in reports, which are generated based on simple HTML templates. The (php-based) plugin mechanism allows for easy and fast adaptation of phplabware to any specific needs." ;
@@ -362957,7 +380979,7 @@ ATLAS Photon Labeler. Contribute to Oht0nger/PhoLabeler development by creating
     sc:url "http://phplabware.sourceforge.net/" .
 
 <https://bio.tools/phpred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0121 ;
@@ -362973,7 +380995,7 @@ ATLAS Photon Labeler. Contribute to Oht0nger/PhoLabeler development by creating
     sc:url "http://lin.uestc.edu.cn/server/PHPred" .
 
 <https://bio.tools/phrapumd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196 ;
     sc:citation <https://doi.org/10.1371/journal.pone.0001836> ;
@@ -362985,7 +381007,7 @@ ATLAS Photon Labeler. Contribute to Oht0nger/PhoLabeler development by creating
     sc:url "http://www.glue.umd.edu/~ALEKSEYZ/PhrapUMDV2" .
 
 <https://bio.tools/phred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0622,
@@ -363006,7 +381028,7 @@ ATLAS Photon Labeler. Contribute to Oht0nger/PhoLabeler development by creating
     biotools:primaryContact "D. Gordon" .
 
 <https://bio.tools/phredphrapconsed> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0622,
@@ -363030,8 +381052,26 @@ ATLAS Photon Labeler. Contribute to Oht0nger/PhoLabeler development by creating
         <http://www.phrap.org/phredphrapconsed.html> ;
     sc:url "http://www.phrap.org/phredphrapconsed.html" .
 
+<https://bio.tools/phreepred> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0798,
+        edam:topic_0821,
+        edam:topic_3315 ;
+    sc:citation <https://doi.org/10.1016/J.JMB.2022.167670>,
+        "pubmed:35671831" ;
+    sc:description "Phage Resistance Emergence Prediction Web Tool to Foresee Encapsulated Bacterial Escape from Phage Cocktail Treatment." ;
+    sc:featureList edam:operation_2426,
+        edam:operation_3461 ;
+    sc:isAccessibleForFree true ;
+    sc:name "PhREEPred" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://phartner.shinyapps.io/PhREEPred/" .
+
 <https://bio.tools/phrog> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0610,
@@ -363055,18 +381095,18 @@ ATLAS Photon Labeler. Contribute to Oht0nger/PhoLabeler development by creating
 
 <https://bio.tools/phsol> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0962" ;
-            sc:name "Small molecule report" ;
-            sc:sameAs "http://edamontology.org/data_0962" ] ;
+            sc:additionalType "http://edamontology.org/data_0962" ;
+            sc:encodingFormat "http://edamontology.org/format_1196" ;
+            sc:name "Small molecule report" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ],
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:encodingFormat "http://edamontology.org/format_2333" ;
+            sc:name "Protein features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2258 ;
     sc:citation <https://doi.org/10.1021/ci600292q>,
@@ -363084,7 +381124,7 @@ ATLAS Photon Labeler. Contribute to Oht0nger/PhoLabeler development by creating
     biotools:primaryContact <http://orcid.org/0000-0003-2333-8453> .
 
 <https://bio.tools/phuser> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0632,
         edam:topic_3168 ;
@@ -363103,7 +381143,7 @@ ATLAS Photon Labeler. Contribute to Oht0nger/PhoLabeler development by creating
     biotools:primaryContact "Rasmus Wernersson" .
 
 <https://bio.tools/phusion> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0196 ;
@@ -363119,7 +381159,7 @@ ATLAS Photon Labeler. Contribute to Oht0nger/PhoLabeler development by creating
     sc:url "http://www.sanger.ac.uk/science/tools/phusion" .
 
 <https://bio.tools/phy-mer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3053 ;
@@ -363135,7 +381175,7 @@ ATLAS Photon Labeler. Contribute to Oht0nger/PhoLabeler development by creating
     biotools:primaryContact "Daniel Navarro-Gomez" .
 
 <https://bio.tools/phycas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3293 ;
     sc:citation "pubmed:25577605" ;
@@ -363150,10 +381190,9 @@ ATLAS Photon Labeler. Contribute to Oht0nger/PhoLabeler development by creating
 
 <https://bio.tools/phycomine> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0842" ;
-            sc:name "Identifier" ;
-            sc:sameAs "http://edamontology.org/data_0842" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0842" ;
+            sc:name "Identifier" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0203,
@@ -363175,24 +381214,47 @@ ATLAS Photon Labeler. Contribute to Oht0nger/PhoLabeler development by creating
         "Windows" ;
     sc:url "https://phycomine.iq.usp.br" .
 
+<https://bio.tools/phycova> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_2269,
+        edam:topic_3293,
+        edam:topic_3314 ;
+    sc:citation <https://doi.org/10.1093/VE/VEAC015>,
+        "pmcid:PMC8922167",
+        "pubmed:35295748" ;
+    sc:description "A tool for exploring covariates of pathogen spread." ;
+    sc:featureList edam:operation_0558,
+        edam:operation_2940,
+        edam:operation_3478,
+        edam:operation_3659,
+        edam:operation_3745 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "PhyCovA" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://github.com/TimBlokker/PhyCovA/blob/master/tutorial/PhyCovA_Tutorial.pdf> ;
+    sc:url "https://evolcompvir-kuleuven.shinyapps.io/PhyCovA/" .
+
 <https://bio.tools/phyd3> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2337" ;
-            sc:name "Resource metadata" ;
-            sc:sameAs "http://edamontology.org/data_2337" ],
+            sc:additionalType "http://edamontology.org/data_2337" ;
+            sc:encodingFormat "http://edamontology.org/format_1920" ;
+            sc:name "Resource metadata" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0872" ;
-            sc:name "Phylogenetic tree" ;
-            sc:sameAs "http://edamontology.org/data_0872" ] ;
+            sc:additionalType "http://edamontology.org/data_0872" ;
+            sc:encodingFormat "http://edamontology.org/format_3159" ;
+            sc:name "Phylogenetic tree" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1707" ;
-            sc:name "Phylogenetic tree image" ;
-            sc:sameAs "http://edamontology.org/data_1707" ],
+            sc:additionalType "http://edamontology.org/data_1707" ;
+            sc:name "Phylogenetic tree image" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0872" ;
-            sc:name "Phylogenetic tree" ;
-            sc:sameAs "http://edamontology.org/data_0872" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0872" ;
+            sc:encodingFormat "http://edamontology.org/format_3159" ;
+            sc:name "Phylogenetic tree" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3293 ;
     sc:author "Lukasz Kreft" ;
@@ -363216,7 +381278,7 @@ ATLAS Photon Labeler. Contribute to Oht0nger/PhoLabeler development by creating
         "VIB BITS Core Facility" .
 
 <https://bio.tools/phydbac2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0194,
@@ -363233,7 +381295,7 @@ ATLAS Photon Labeler. Contribute to Oht0nger/PhoLabeler development by creating
     sc:url "http://igs-server.cnrs-mrs.fr/phydbac/" .
 
 <https://bio.tools/phydose> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_2640,
         edam:topic_3168,
@@ -363255,7 +381317,7 @@ phydoser is a package to aid in the design a single-cell sequencing follow-up ex
     sc:url "https://github.com/elkebir-group/phydoser" .
 
 <https://bio.tools/phyinformr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_3293 ;
@@ -363275,7 +381337,7 @@ phydoser is a package to aid in the design a single-cell sequencing follow-up ex
     biotools:primaryContact <http://orcid.org/0000-0003-0863-2283> .
 
 <https://bio.tools/phykit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0157,
         edam:topic_0194,
@@ -363303,7 +381365,7 @@ This documentation covers downloading and installing PhyKIT. Details about each
     sc:url "https://jlsteenwyk.com/PhyKIT" .
 
 <https://bio.tools/phyleasprog> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0084,
@@ -363325,7 +381387,7 @@ This documentation covers downloading and installing PhyKIT. Details about each
     biotools:primaryContact "PhyleasProg Support" .
 
 <https://bio.tools/phylemon> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0194,
         edam:topic_0797 ;
@@ -363347,7 +381409,7 @@ This documentation covers downloading and installing PhyKIT. Details about each
     biotools:primaryContact "babelomics@cipf.es  (Francisco García)" .
 
 <https://bio.tools/phylics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0199,
@@ -363372,7 +381434,7 @@ This documentation covers downloading and installing PhyKIT. Details about each
     sc:url "https://github.com/bioinformatics-polito/PhyliCS" .
 
 <https://bio.tools/phylip> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0621,
@@ -363399,7 +381461,7 @@ This documentation covers downloading and installing PhyKIT. Details about each
     biotools:primaryContact "Joe Felsenstein" .
 
 <https://bio.tools/phylip-dna-parsimony-gui> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3374 ;
@@ -363414,7 +381476,7 @@ This documentation covers downloading and installing PhyKIT. Details about each
     biotools:primaryContact "James J. Cai" .
 
 <https://bio.tools/phylo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0078,
@@ -363431,7 +381493,7 @@ This documentation covers downloading and installing PhyKIT. Details about each
     sc:url "http://phylo.cs.mcgill.ca/" .
 
 <https://bio.tools/phylo-mlogo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0092 ;
@@ -363447,7 +381509,7 @@ This documentation covers downloading and installing PhyKIT. Details about each
     sc:url "http://cg1.iis.sinica.edu.tw/new/phylomlogo/" .
 
 <https://bio.tools/phylo-node> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3053,
         edam:topic_3293,
@@ -363466,8 +381528,28 @@ This documentation covers downloading and installing PhyKIT. Details about each
     sc:url "https://github.com/dohalloran/phylo-node" ;
     biotools:primaryContact "Support" .
 
+<https://bio.tools/phylobayesmpi> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1997" ;
+            sc:name "Sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_2269,
+        edam:topic_3293 ;
+    sc:citation <https://doi.org/10.1093/sysbio/syt022>,
+        "pubmed:23564032" ;
+    sc:description "A Bayesian software for phylogenetic reconstruction using mixture models" ;
+    sc:featureList edam:operation_3478 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-2.0" ;
+    sc:name "phylobayesmpi" ;
+    sc:operatingSystem "Linux" ;
+    sc:softwareHelp <https://github.com/bayesiancook/pbmpi/blob/master/pb_mpiManual1.8.pdf> ;
+    sc:url "https://github.com/bayesiancook/pbmpi" .
+
 <https://bio.tools/phylobot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_3056,
@@ -363488,7 +381570,7 @@ This documentation covers downloading and installing PhyKIT. Details about each
         "General Support" .
 
 <https://bio.tools/phylochipanalyzer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0632,
         edam:topic_3179 ;
@@ -363501,8 +381583,31 @@ This documentation covers downloading and installing PhyKIT. Details about each
     sc:softwareVersion "1.0" ;
     sc:url "http://www.awi.de/en/science/special-groups/scientific-computing/bioinformatics/software.html" .
 
+<https://bio.tools/phylocloud> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0084,
+        edam:topic_0194,
+        edam:topic_0637,
+        edam:topic_0769 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAC324>,
+        "pmcid:PMC9252743",
+        "pubmed:35544233" ;
+    sc:description "PhyloCloud is an online platform for the interactive analysis, annotation and visualization of large collections of phylogenetic trees and multiple sequence alignments. Users can browse the Featured Tree Collections or Upload Trees to your own workplace both registerially and anonymously." ;
+    sc:featureList edam:operation_0326,
+        edam:operation_0555,
+        edam:operation_0558,
+        edam:operation_0567,
+        edam:operation_3478 ;
+    sc:isAccessibleForFree true ;
+    sc:name "PhyloCloud" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://phylocloud.cgmlab.org" .
+
 <https://bio.tools/phylocorrelate> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0194,
         edam:topic_0602,
@@ -363525,7 +381630,7 @@ Phylocorrelate is a tool that detects pairs of gene/protein families with simila
     sc:url "http://phylocorrelate.uwaterloo.ca" .
 
 <https://bio.tools/phylocsfpp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0160,
@@ -363542,7 +381647,7 @@ Phylocorrelate is a tool that detects pairs of gene/protein families with simila
     biotools:primaryContact "Martin Steinegger" .
 
 <https://bio.tools/phyloctcflooping> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0196,
@@ -363561,8 +381666,32 @@ Phylocorrelate is a tool that detects pairs of gene/protein families with simila
     sc:url "https://github.com/morphos30/PhyloCTCFLooping" ;
     biotools:primaryContact "Raphaël Mourad" .
 
+<https://bio.tools/phylodeep> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Library" ;
+    sc:applicationSubCategory edam:topic_0084,
+        edam:topic_2269,
+        edam:topic_3305,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1038/S41467-022-31511-0>,
+        "pmcid:PMC9258765",
+        "pubmed:35794110" ;
+    sc:description "Deep learning from phylogenies to uncover the epidemiological dynamics of outbreaks." ;
+    sc:featureList edam:operation_0323,
+        edam:operation_0326,
+        edam:operation_3891,
+        edam:operation_3942 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "PhyloDeep" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/evolbioinfo/phylodeep" .
+
 <https://bio.tools/phylodome> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0602,
@@ -363583,7 +381712,7 @@ Phylocorrelate is a tool that detects pairs of gene/protein families with simila
     biotools:primaryContact "Novatchkova M." .
 
 <https://bio.tools/phylodyn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3053,
         edam:topic_3293,
@@ -363600,21 +381729,8 @@ Phylocorrelate is a tool that detects pairs of gene/protein families with simila
     sc:url "https://github.com/mdkarcher/phylodyn" ;
     biotools:primaryContact "Michael Karcher" .
 
-<https://bio.tools/phylodyn_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0084,
-        edam:topic_3305,
-        edam:topic_3315 ;
-    sc:citation <https://doi.org/10.1534/GENETICS.119.302373>,
-        "pmcid:PMC6827370",
-        "pubmed:31511299" ;
-    sc:description "> NAME EQUAL TO (PUB. DIFFERENT) bio.tools/phylodyn | Bayesian Estimation of Population Size Changes by Sampling Tajima's Trees | This is a branch forked from mdkarcher/phylodyn. The purpose of this branch of phylodyn is to incorporate the sampling of genealogies and facilitate phylodynamic inference and analysis from data directly. This branch includes some Python code and installation may be problematic. We are working to resolve this" ;
-    sc:featureList edam:operation_0487,
-        edam:operation_0547 ;
-    sc:name "phylodyn_autogenerated" ;
-    sc:url "https://github.com/JuliaPalacios/phylodyn" .
-
 <https://bio.tools/phylodyn_sample> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_3305,
         edam:topic_3315 ;
@@ -363628,7 +381744,7 @@ Phylocorrelate is a tool that detects pairs of gene/protein families with simila
     sc:url "https://github.com/JuliaPalacios/phylodyn" .
 
 <https://bio.tools/phylofacts_fat-cat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0084,
@@ -363643,7 +381759,7 @@ Phylocorrelate is a tool that detects pairs of gene/protein families with simila
     sc:url "http://phylogenomics.berkeley.edu/phylofacts/fatcat/" .
 
 <https://bio.tools/phylofisher> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0194,
@@ -363669,7 +381785,7 @@ Phylocorrelate is a tool that detects pairs of gene/protein families with simila
     sc:url "https://github.com/TheBrownLab/PhyloFisher" .
 
 <https://bio.tools/phyloflash> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0659,
         edam:topic_3174,
@@ -363695,7 +381811,7 @@ phyloFlash is a pipeline to rapidly reconstruct the SSU rRNAs and explore the ph
     sc:url "https://github.com/HRGV/phyloFlash" .
 
 <https://bio.tools/phylofold> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0084,
         edam:topic_0097,
@@ -363714,8 +381830,31 @@ This project has been written in mainly Rust, a systems programming language. Yo
     sc:name "PhyloFold" ;
     sc:url "https://github.com/heartsh/phylofold" .
 
+<https://bio.tools/phylogatr> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0610,
+        edam:topic_0769,
+        edam:topic_3056,
+        edam:topic_3299,
+        edam:topic_3500 ;
+    sc:citation <https://doi.org/10.1101/2021.10.11.461680> ;
+    sc:description "Phylogeographic data aggregation and repurposing." ;
+    sc:featureList edam:operation_0492,
+        edam:operation_3192,
+        edam:operation_3431,
+        edam:operation_3436 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "phylogatR" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareVersion "Beta test" ;
+    sc:url "https://phylogatr.org" .
+
 <https://bio.tools/phylogenetic-analysis-dna-sequences-genomes> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0621,
@@ -363737,7 +381876,7 @@ This project has been written in mainly Rust, a systems programming language. Yo
     biotools:primaryContact "Changchuan Yin" .
 
 <https://bio.tools/phylogenetics_at_jst> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API" ;
     sc:applicationSubCategory edam:topic_3293,
         edam:topic_3365 ;
@@ -363753,7 +381892,7 @@ This project has been written in mainly Rust, a systems programming language. Yo
     sc:url "https://github.com/PasqualeInfn/JST" .
 
 <https://bio.tools/phylogenize> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0602,
         edam:topic_0625,
@@ -363771,7 +381910,7 @@ More specifically, given community composition data, phylogenize links genes in
     sc:url "https://phylogenize.org" .
 
 <https://bio.tools/phylogeny_IO> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0780,
@@ -363794,7 +381933,7 @@ More specifically, given community composition data, phylogenize links genes in
     biotools:primaryContact <https://orcid.org/0000-0003-4369-1019> .
 
 <https://bio.tools/phylogeo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3293,
         edam:topic_3301,
@@ -363809,7 +381948,7 @@ More specifically, given community composition data, phylogenize links genes in
     sc:url "http://zachcp.github.io/phylogeo/" .
 
 <https://bio.tools/phylogeoref> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0092,
@@ -363824,7 +381963,7 @@ More specifically, given community composition data, phylogenize links genes in
     sc:url "https://github.com/kdiverson/phyloGeoRef" .
 
 <https://bio.tools/phylogeosim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3053,
@@ -363840,7 +381979,7 @@ More specifically, given community composition data, phylogenize links genes in
     sc:url "http://ebe.ulb.ac.be/ebe/PhyloGeoSim.html" .
 
 <https://bio.tools/phylogibbs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0084,
@@ -363866,7 +382005,7 @@ More specifically, given community composition data, phylogenize links genes in
     biotools:primaryContact "Mikhail Pachkov" .
 
 <https://bio.tools/phylohmm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1126/scisignal.2002515> ;
@@ -363879,7 +382018,7 @@ More specifically, given community composition data, phylogenize links genes in
     sc:url "http://www.moseslab.csb.utoronto.ca/phylo_HMM/" .
 
 <https://bio.tools/phylojive> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_3050,
@@ -363896,7 +382035,7 @@ More specifically, given community composition data, phylogenize links genes in
     sc:url "http://phylojive.ala.org.au/" .
 
 <https://bio.tools/phyloligo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3168,
@@ -363913,7 +382052,7 @@ More specifically, given community composition data, phylogenize links genes in
     biotools:primaryContact "Ludovic Mallet" .
 
 <https://bio.tools/phylomad> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0194,
         edam:topic_2269,
@@ -363931,16 +382070,71 @@ More specifically, given community composition data, phylogenize links genes in
     sc:url "https://github.com/duchene/phylomad" ;
     biotools:primaryContact "David A. Duchêne" .
 
+<https://bio.tools/phylomda> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_3168,
+        edam:topic_3293,
+        edam:topic_3697 ;
+    sc:citation <https://doi.org/10.1186/S12859-022-04744-5>,
+        "pmcid:PMC9169257",
+        "pubmed:35668363" ;
+    sc:description "An R package for phylogeny-aware microbiome data analysis." ;
+    sc:featureList edam:operation_0323,
+        edam:operation_3658,
+        edam:operation_3659 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "phyloMDA" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/liudoubletian/phyloMDA" .
+
+<https://bio.tools/phylomedb> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0084,
+        edam:topic_0194,
+        edam:topic_0621,
+        edam:topic_0634 ;
+    sc:citation <https://doi.org/10.1093/nar/gkab966>,
+        <https://doi.org/10.1093/nar/gkm899>,
+        <https://doi.org/10.1093/nar/gkq1109>,
+        <https://doi.org/10.1093/nar/gkt1177>,
+        "pmcid:PMC2238872",
+        "pmcid:PMC3013701",
+        "pmcid:PMC3964985",
+        "pmcid:PMC8728271",
+        "pubmed:17962297",
+        "pubmed:21075798",
+        "pubmed:24275491",
+        "pubmed:34718760" ;
+    sc:description "PhylomeDB is a public database for complete catalogs of gene phylogenie. It allows users to interactively explore the evolutionary history of genes through the visualization of phylogenetic trees and multiple sequence alignments. Moreover, phylomeDB provides genome-wide orthology and paralogy predictions which are based on the analysis of the phylogenetic trees. The automated pipeline used to reconstruct trees aims at providing a high-quality phylogenetic analysis of different genomes, including Maximum Likelihood tree inference, alignment trimming and evolutionary model testing." ;
+    sc:featureList edam:operation_0499,
+        edam:operation_0544,
+        edam:operation_2423,
+        edam:operation_3478 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Other" ;
+    sc:name "PhylomeDB" ;
+    sc:operatingSystem "Linux" ;
+    sc:softwareHelp <http://phylomedb.org/about>,
+        <http://phylomedb.org/faq>,
+        <http://phylomedb.org/help> ;
+    sc:softwareVersion "5.0" ;
+    sc:url "http://phylomeDB.org" ;
+    biotools:primaryContact "Toni Gabaldón" .
+
 <https://bio.tools/phylommand> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2523" ;
-            sc:name "Phylogenetic data" ;
-            sc:sameAs "http://edamontology.org/data_2523" ] ;
+            sc:additionalType "http://edamontology.org/data_2523" ;
+            sc:encodingFormat "http://edamontology.org/format_1910" ;
+            sc:name "Phylogenetic data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2523" ;
-            sc:name "Phylogenetic data" ;
-            sc:sameAs "http://edamontology.org/data_2523" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2523" ;
+            sc:name "Phylogenetic data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Script" ;
     sc:applicationSubCategory edam:topic_0084 ;
@@ -363957,7 +382151,7 @@ More specifically, given community composition data, phylogenize links genes in
     sc:url "https://github.com/mr-y/phylommand" .
 
 <https://bio.tools/phylonet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0204,
@@ -363971,7 +382165,7 @@ More specifically, given community composition data, phylogenize links genes in
     sc:url "http://stormo.wustl.edu/PhyloNet/" .
 
 <https://bio.tools/phylonium> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0196,
         edam:topic_3168,
@@ -363986,7 +382180,7 @@ More specifically, given community composition data, phylogenize links genes in
     sc:url "http://github.com/evolbioinf/phylonium" .
 
 <https://bio.tools/phylopars> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0625,
@@ -364007,7 +382201,7 @@ More specifically, given community composition data, phylogenize links genes in
     biotools:primaryContact "Webmaster" .
 
 <https://bio.tools/phylopat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0102,
@@ -364027,7 +382221,7 @@ More specifically, given community composition data, phylogenize links genes in
     biotools:primaryContact "T. Hulsen" .
 
 <https://bio.tools/phylopdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0632,
@@ -364043,8 +382237,33 @@ More specifically, given community composition data, phylogenize links genes in
     sc:softwareHelp <http://g2im.u-clermont1.fr/phylopdb/help.php> ;
     sc:url "http://g2im.u-clermont1.fr/phylopdb/help.php" .
 
+<https://bio.tools/phylopgm> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0602,
+        edam:topic_0749,
+        edam:topic_3169,
+        edam:topic_3512,
+        edam:topic_3794 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC259>,
+        "pmcid:PMC9235490",
+        "pubmed:35758792" ;
+    sc:description "Boosting regulatory function prediction accuracy using evolutionary information." ;
+    sc:featureList edam:operation_0445,
+        edam:operation_2437,
+        edam:operation_3192,
+        edam:operation_3663,
+        edam:operation_3901 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "PhyloPGM" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/BlanchetteLab/PhyloPGM" .
+
 <https://bio.tools/phyloprimer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0632,
         edam:topic_3168,
@@ -364064,7 +382283,7 @@ More specifically, given community composition data, phylogenize links genes in
     biotools:primaryContact "Gilda Varliero" .
 
 <https://bio.tools/phylopro> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0602,
@@ -364085,7 +382304,7 @@ More specifically, given community composition data, phylogenize links genes in
     biotools:primaryContact "John Parkinson" .
 
 <https://bio.tools/phyloprofil> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0622,
@@ -364105,7 +382324,7 @@ More specifically, given community composition data, phylogenize links genes in
         "Ngoc-Vinh Tran" .
 
 <https://bio.tools/phyloprofile> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_3053,
@@ -364125,7 +382344,7 @@ More specifically, given community composition data, phylogenize links genes in
     biotools:primaryContact "Vinh Tran" .
 
 <https://bio.tools/phylopythias> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0637,
         edam:topic_3056,
@@ -364145,7 +382364,7 @@ More specifically, given community composition data, phylogenize links genes in
     biotools:primaryContact "Alice McHardy" .
 
 <https://bio.tools/phyloregion> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3050,
         edam:topic_3293 ;
@@ -364160,7 +382379,7 @@ An R package for biogeographic regionalization (the classification of geographic
     sc:url "https://github.com/darunabas/phyloregion" .
 
 <https://bio.tools/phylornaalifold> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0099,
@@ -364175,7 +382394,7 @@ An R package for biogeographic regionalization (the classification of geographic
     biotools:primaryContact "Shaojie Zhang" .
 
 <https://bio.tools/phyloscan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0749,
@@ -364194,7 +382413,7 @@ An R package for biogeographic regionalization (the classification of geographic
     sc:url "http://bayesweb.wadsworth.org/phyloscan/" .
 
 <https://bio.tools/phyloseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -364218,7 +382437,7 @@ An R package for biogeographic regionalization (the classification of geographic
     biotools:primaryContact <http://orcid.org/0000-0001-8879-3954> .
 
 <https://bio.tools/phylosift> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Suite" ;
     sc:applicationSubCategory edam:topic_0622,
@@ -364233,7 +382452,7 @@ An R package for biogeographic regionalization (the classification of geographic
     sc:url "https://phylosift.wordpress.com/about-2/" .
 
 <https://bio.tools/phylosim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3293,
         edam:topic_3524 ;
@@ -364249,7 +382468,7 @@ An R package for biogeographic regionalization (the classification of geographic
     sc:url "http://www.ebi.ac.uk/goldman-srv/phylosim/" .
 
 <https://bio.tools/phyloskeleton> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0194,
         edam:topic_0637,
@@ -364263,7 +382482,7 @@ An R package for biogeographic regionalization (the classification of geographic
     biotools:primaryContact "Lionel Guy" .
 
 <https://bio.tools/phylosofs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0749,
         edam:topic_3308,
@@ -364283,8 +382502,33 @@ PhyloSofS (Phylogenies of Splicing isoforms Structures) is a fully automated com
     sc:name "PhyloSofS" ;
     sc:url "https://github.com/PhyloSofS-Team/PhyloSofS" .
 
+<https://bio.tools/phylostat> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_0872" ;
+            sc:name "Phylogenetic tree" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3175,
+        edam:topic_3293,
+        edam:topic_3944 ;
+    sc:citation <https://doi.org/10.3906/BIY-2105-18>,
+        "pmcid:PMC8733950",
+        "pubmed:35068947" ;
+    sc:description "A web-based tool to analyze paralogous clade divergence in phylogenetic trees." ;
+    sc:featureList edam:operation_0323,
+        edam:operation_0325,
+        edam:operation_0326,
+        edam:operation_0567 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "Phylostat" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://phylo.io" .
+
 <https://bio.tools/phylosubsets> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0194,
         edam:topic_0621,
@@ -364305,7 +382549,7 @@ Select species from the list which follows the taxonomy. Then copy and paste or
     sc:url "http://vertlife.org/phylosubsets" .
 
 <https://bio.tools/phylotar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0637,
         edam:topic_0654,
@@ -364325,7 +382569,7 @@ Select species from the list which follows the taxonomy. Then copy and paste or
     biotools:primaryContact "Dominic J. Bennett" .
 
 <https://bio.tools/phylotrac> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3293,
         edam:topic_3518 ;
@@ -364340,7 +382584,7 @@ Select species from the list which follows the taxonomy. Then copy and paste or
     sc:url "http://www.phylotrac.org/" .
 
 <https://bio.tools/phylotrack> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_3277,
@@ -364354,7 +382598,7 @@ Select species from the list which follows the taxonomy. Then copy and paste or
     sc:url "http://sourceforge.net/projects/phylotrack/" .
 
 <https://bio.tools/phylotree> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3293 ;
     sc:citation "pubmed:20802801" ;
@@ -364367,7 +382611,7 @@ Select species from the list which follows the taxonomy. Then copy and paste or
     sc:url "http://csurs.csr.uky.edu/phylotree/" .
 
 <https://bio.tools/phylotu> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3174,
         edam:topic_3293,
@@ -364382,7 +382626,7 @@ Select species from the list which follows the taxonomy. Then copy and paste or
     sc:url "https://github.com/sharpton/PhylOTU" .
 
 <https://bio.tools/phylotyper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3053,
         edam:topic_3293,
@@ -364397,8 +382641,29 @@ Select species from the list which follows the taxonomy. Then copy and paste or
     sc:url "https://github.com/superphy/insilico-subtyping" ;
     biotools:primaryContact "Matthew Whiteside" .
 
+<https://bio.tools/phylovar> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0084,
+        edam:topic_0199,
+        edam:topic_0625,
+        edam:topic_0749,
+        edam:topic_3676 ;
+    sc:citation <https://doi.org/10.1101/2022.01.16.476509> ;
+    sc:description "Towards scalable phylogeny-aware inference of single-nucleotide variations from single-cell DNA sequencing data." ;
+    sc:featureList edam:operation_3196,
+        edam:operation_3227,
+        edam:operation_3435 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "Phylovar" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/mae6/Phylovar.git" .
+
 <https://bio.tools/phylowood> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0092 ;
@@ -364416,7 +382681,7 @@ Select species from the list which follows the taxonomy. Then copy and paste or
     biotools:primaryContact "Michael Landis" .
 
 <https://bio.tools/phyluce> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0194,
         edam:topic_0654 ;
@@ -364432,18 +382697,18 @@ Select species from the list which follows the taxonomy. Then copy and paste or
 
 <https://bio.tools/phyml> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1384" ;
-            sc:name "Protein sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_1384" ],
+            sc:additionalType "http://edamontology.org/data_1384" ;
+            sc:encodingFormat "http://edamontology.org/format_2924" ;
+            sc:name "Protein sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1383" ;
-            sc:name "Nucleic acid sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_1383" ] ;
+            sc:additionalType "http://edamontology.org/data_1383" ;
+            sc:encodingFormat "http://edamontology.org/format_2924" ;
+            sc:name "Nucleic acid sequence alignment" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0872" ;
-            sc:name "Phylogenetic tree" ;
-            sc:sameAs "http://edamontology.org/data_0872" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0872" ;
+            sc:encodingFormat "http://edamontology.org/format_1910" ;
+            sc:name "Phylogenetic tree" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0091,
@@ -364466,7 +382731,7 @@ Select species from the list which follows the taxonomy. Then copy and paste or
     biotools:primaryContact "Stephane Guindon" .
 
 <https://bio.tools/phymm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_2269,
@@ -364486,14 +382751,14 @@ Select species from the list which follows the taxonomy. Then copy and paste or
 
 <https://bio.tools/phymyco-db> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ] ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Nucleic acid sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Sequence alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0623 ;
     sc:citation <https://doi.org/10.1371/journal.pone.0043117> ;
@@ -364510,7 +382775,7 @@ Select species from the list which follows the taxonomy. Then copy and paste or
     biotools:primaryContact "GenOuest" .
 
 <https://bio.tools/phyr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_2269,
         edam:topic_3293 ;
@@ -364528,11 +382793,15 @@ A collection of functions to do model-based phylogenetic analysis. It includes f
     sc:url "https://github.com/daijiang/phyr" .
 
 <https://bio.tools/phyre> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_2275 ;
-    sc:citation "pubmed:25950237" ;
+    sc:citation <https://doi.org/10.1038/nprot.2009.2>,
+        <https://doi.org/10.1038/nprot.2015.053>,
+        "pmcid:PMC5298202",
+        "pubmed:19247286",
+        "pubmed:25950237" ;
     sc:description "Major update to the original Phyre server. The new system is designed around the idea that you have a protein sequence/gene and want to predict its three-dimensional (3D) structure. It uses the alignment of hidden Markov models via HHsearch1 to significantly improve accuracy of alignment and detection rate." ;
     sc:featureList edam:operation_0300,
         edam:operation_0477,
@@ -364545,7 +382814,7 @@ A collection of functions to do model-based phylogenetic analysis. It includes f
     sc:url "http://www.sbg.bio.ic.ac.uk/phyre2/html/page.cgi?id=index" .
 
 <https://bio.tools/phyrepid> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0157,
         edam:topic_0194,
         edam:topic_0621,
@@ -364562,7 +382831,7 @@ Protein repeats consisting of domains or motifs are involved in key biological p
     sc:url "https://github.com/ivanbelzen/PhyRepID/" .
 
 <https://bio.tools/phyrex> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0659,
@@ -364580,14 +382849,12 @@ Protein repeats consisting of domains or motifs are involved in key biological p
 
 <https://bio.tools/physbinder> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ] ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:name "Nucleic acid sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2070" ;
-            sc:name "Sequence motif (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_2070" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2070" ;
+            sc:name "Sequence motif (nucleic acid)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3511 ;
     sc:citation <https://doi.org/10.1093/nar/gkt288>,
@@ -364605,7 +382872,7 @@ Protein repeats consisting of domains or motifs are involved in key biological p
     sc:url "http://bioit.dmbr.ugent.be/physbinder/" .
 
 <https://bio.tools/physcraper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3293,
         edam:topic_3944 ;
@@ -364624,8 +382891,28 @@ To render the BMC Bioinformatics template version.""" ;
     sc:softwareHelp <http://physcraper.readthedocs.io> ;
     sc:url "https://github.com/McTavishLab/physcraper" .
 
+<https://bio.tools/physiboss> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_2229,
+        edam:topic_2640,
+        edam:topic_3308 ;
+    sc:citation <https://doi.org/10.1101/2022.01.06.468363> ;
+    sc:description "A sustainable integration of stochastic Boolean and agent-based modelling frameworks." ;
+    sc:featureList edam:operation_2426,
+        edam:operation_3927 ;
+    sc:isAccessibleForFree true ;
+    sc:license "BSD-3-Clause" ;
+    sc:name "PhysiBoSS" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://github.com/PhysiBoSS/PhysiBoSS/blob/master/CODE_OF_CONDUCT.md> ;
+    sc:softwareVersion "2.0" ;
+    sc:url "https://github.com/PhysiBoSS/PhysiBoSS" .
+
 <https://bio.tools/physical_validation> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0176,
         edam:topic_3315,
@@ -364638,23 +382925,20 @@ To render the BMC Bioinformatics template version.""" ;
     sc:name "physical validation" ;
     sc:url "https://physical-validation.readthedocs.io" .
 
-<https://bio.tools/physician-scientists_OHSU> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3303,
-        edam:topic_3344 ;
-    sc:citation <https://doi.org/10.1017/CTS.2018.214>,
-        "pmcid:PMC6798687" ;
-    sc:description """A physician-scientist workforce dashboard for biomedical research institutions.
-
-OBJECTIVES SPECIFIC AIMS: A growing concern about the declining physician-scientist workforce prompted the 2014 National Institutes of Health (NIH) Physician Scientist Workforce to recommended that “tools for assessing the strength of the biomedical workforce” be developed. To aid strategic planning, the Oregon Clinical and Translational Research Institute convened key stakeholders at its home university, Oregon Health and Science University (OHSU), to survey the local landscape of physician scientists. Surprisingly, few consensus methods were available to measure and benchmark OHSU with respect to national comparators.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'OHSU', 'RGP-holding physician-scientists OHSU', 'physician-scientists', 'physician-scientist workforce'""" ;
-    sc:name "physician-scientists OHSU" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6798687/" .
+<https://bio.tools/physicell-x> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:description """PhysiCell-X is the distributed-shared parallel version of PhysiCell (http://physicell.org). PhysiCell is a open-source,
+multi-physics, multi-scale, agent-based simulator for biological systems. It provides both the stage
+(micro-environment) and actors (cells or agents) for simulation.""" ;
+    sc:license "BSD-3-Clause" ;
+    sc:name "PhysiCell-X" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://gitlab.bsc.es/gsaxena/physicell_x" .
 
 <https://bio.tools/physico> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0123 ;
@@ -364667,7 +382951,7 @@ OBJECTIVES SPECIFIC AIMS: A growing concern about the declining physician-scient
     sc:url "http://sourceforge.net/projects/physico2/" .
 
 <https://bio.tools/physiolibrary> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3303 ;
     sc:author "Marek Matejak" ;
@@ -364689,7 +382973,7 @@ OBJECTIVES SPECIFIC AIMS: A growing concern about the declining physician-scient
     biotools:primaryContact "Marek Mateják" .
 
 <https://bio.tools/physortr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0194,
         edam:topic_0610,
@@ -364709,7 +382993,7 @@ OBJECTIVES SPECIFIC AIMS: A growing concern about the declining physician-scient
     biotools:primaryContact <http://orcid.org/0000-0002-3729-8176> .
 
 <https://bio.tools/phytb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0634,
@@ -364730,7 +383014,7 @@ OBJECTIVES SPECIFIC AIMS: A growing concern about the declining physician-scient
         "Coll F" .
 
 <https://bio.tools/phytebyte> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0202,
         edam:topic_3305,
@@ -364748,7 +383032,7 @@ Phytebyte is an extensible software framework used to train machine learning mod
     sc:url "https://github.com/seanharr11/phytebyte" .
 
 <https://bio.tools/phyto-lrr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0160,
@@ -364770,8 +383054,38 @@ The program is based on the position specific scoring matrix (PSSM) algorithm an
     sc:name "Phyto-LRR" ;
     sc:url "https://phytolrr.com/findlrr" .
 
+<https://bio.tools/phytochemdb> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2909" ;
+            sc:name "Organism name" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2301" ;
+            sc:name "SMILES string" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_0846" ;
+            sc:name "Chemical formula" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0202,
+        edam:topic_0209,
+        edam:topic_0780,
+        edam:topic_2275,
+        edam:topic_3810 ;
+    sc:citation <https://doi.org/10.1093/DATABASE/BAAC002>,
+        "pubmed:35234849" ;
+    sc:description "A platform for virtual screening and computer-aided drug designing." ;
+    sc:featureList edam:operation_0479,
+        edam:operation_2422,
+        edam:operation_3938 ;
+    sc:isAccessibleForFree true ;
+    sc:name "phytochemdb" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://phytochemdb.com/" .
+
 <https://bio.tools/phytozome> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0622,
@@ -364793,7 +383107,7 @@ The program is based on the position specific scoring matrix (PSSM) algorithm an
     biotools:primaryContact "David M. Goodstein" .
 
 <https://bio.tools/phyx> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3293,
@@ -364810,7 +383124,7 @@ The program is based on the position specific scoring matrix (PSSM) algorithm an
     biotools:primaryContact "Stephen A. Smith" .
 
 <https://bio.tools/pi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0602,
@@ -364831,7 +383145,7 @@ The program is based on the position specific scoring matrix (PSSM) algorithm an
     biotools:primaryContact "Hai Fang" .
 
 <https://bio.tools/pi-net> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3318,
         edam:topic_3382,
         edam:topic_3474 ;
@@ -364851,7 +383165,7 @@ Here we provide sample code to compute persistence images (PIs) using the propos
     sc:url "https://github.com/anirudhsom/PI-Net" .
 
 <https://bio.tools/pi2pe> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -364879,18 +383193,18 @@ Here we provide sample code to compute persistence images (PIs) using the propos
 
 <https://bio.tools/pia> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3247" ;
+            sc:name "Mass spectrometry spectra" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ],
+            sc:additionalType "http://edamontology.org/data_0989" ;
+            sc:encodingFormat "http://edamontology.org/format_3681" ;
+            sc:name "Protein identifier" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0989" ;
-            sc:name "Protein identifier" ;
-            sc:sameAs "http://edamontology.org/data_0989" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_3681" ;
+            sc:name "Peptide identification" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application",
         "Library",
@@ -364918,7 +383232,7 @@ Here we provide sample code to compute persistence images (PIs) using the propos
     biotools:primaryContact <http://orcid.org/0000-0001-7522-4007> .
 
 <https://bio.tools/piage> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3053 ;
@@ -364932,7 +383246,7 @@ Here we provide sample code to compute persistence images (PIs) using the propos
     sc:url "http://www.dkfz.de/en/epidemiologie-krebserkrankungen/software/software.html" .
 
 <https://bio.tools/piana> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2259 ;
     sc:author "Ramon Aragüés" ;
@@ -364950,7 +383264,7 @@ Here we provide sample code to compute persistence images (PIs) using the propos
     sc:url "http://sbi.imim.es/piana/" .
 
 <https://bio.tools/piano> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0623,
@@ -364971,7 +383285,7 @@ Here we provide sample code to compute persistence images (PIs) using the propos
     biotools:primaryContact <http://orcid.org/0000-0003-4153-5354> .
 
 <https://bio.tools/piano-server> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_3170,
         edam:topic_3295,
@@ -364993,7 +383307,7 @@ Retrieve the results by the job ID.
     sc:url "http://piano.rnamd.com" .
 
 <https://bio.tools/pibase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0797,
         edam:topic_2885,
@@ -365008,7 +383322,7 @@ Retrieve the results by the job ID.
     sc:url "http://www.ikmb.uni-kiel.de/pibase/" .
 
 <https://bio.tools/pic> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0128,
@@ -365027,14 +383341,12 @@ Retrieve the results by the job ID.
 
 <https://bio.tools/pica> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2872" ;
-            sc:name "ID list" ;
-            sc:sameAs "http://edamontology.org/data_2872" ] ;
+            sc:additionalType "http://edamontology.org/data_2872" ;
+            sc:name "ID list" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0920" ;
-            sc:name "Genotype/phenotype report" ;
-            sc:sameAs "http://edamontology.org/data_0920" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0920" ;
+            sc:name "Genotype/phenotype report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0797,
         edam:topic_3174 ;
@@ -365054,7 +383366,7 @@ Retrieve the results by the job ID.
     sc:url "https://github.com/univieCUBE/PICA" .
 
 <https://bio.tools/picall> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2885,
         edam:topic_3056,
@@ -365069,21 +383381,21 @@ Retrieve the results by the job ID.
     biotools:primaryContact "Vikas Bansal" .
 
 <https://bio.tools/picard_addorreplacereadgroups> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "Assigns all the reads in a file to a single new read-group. This tool accepts INPUT BAM and SAM files or URLs from the Global Alliance for Genomics and Health (GA4GH)." ;
     sc:name "picard_AddOrReplaceReadGroups" ;
     sc:url "https://gatk.broadinstitute.org/hc/en-us/articles/360037226472-AddOrReplaceReadGroups-Picard-" .
 
 <https://bio.tools/picard_arrg> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Sequence trace" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:citation <https://doi.org/10.1093/nar/gkw343>,
@@ -365100,14 +383412,14 @@ Retrieve the results by the job ID.
 
 <https://bio.tools/picard_bamindexstats> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ] ;
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Sequence trace" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:citation <https://doi.org/10.1093/nar/gkw343>,
@@ -365124,19 +383436,19 @@ Retrieve the results by the job ID.
     biotools:primaryContact "Galaxy Support Team" .
 
 <https://bio.tools/picard_bedtointervallist> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "Converts a BED file to a Picard Interval List. This tool provides easy conversion from BED to the Picard interval_list format which is required by many Picard processing tools. Note that the coordinate system of BED files is such that the first base or position in a sequence is numbered \"0\", while in interval_list files it is numbered \"1\"." ;
     sc:name "picard_bedtointervallist" ;
     sc:url "https://gatk.broadinstitute.org/hc/en-us/articles/360036883931-BedToIntervalList-Picard-" .
 
 <https://bio.tools/picard_collectalignmentsummarymetrics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "Produces a summary of alignment metrics from a SAM or BAM file. This tool takes a SAM/BAM file input and produces metrics detailing the quality of the read alignments as well as the proportion of the reads that passed machine signal-to-noise threshold quality filters. Note that these quality filters are specific to Illumina data; for additional information, please see the corresponding GATK Dictionary entry." ;
     sc:name "picard_collectalignmentsummarymetrics" ;
     sc:url "https://gatk.broadinstitute.org/hc/en-us/articles/360036883111-CollectAlignmentSummaryMetrics-Picard-" .
 
 <https://bio.tools/picard_collecthsmetrics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description """Collects hybrid-selection (HS) metrics for a SAM or BAM file.
 
 This tool takes a SAM/BAM file input and collects metrics that are specific for sequence datasets generated through hybrid-selection. Hybrid-selection (HS) is the most commonly used technique to capture exon-specific sequences for targeted sequencing experiments such as exome sequencing; for more information, please see the corresponding GATK Dictionary entry.""" ;
@@ -365145,18 +383457,18 @@ This tool takes a SAM/BAM file input and collects metrics that are specific for
 
 <https://bio.tools/picard_fastqtosam> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1933" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1933" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Sequence trace" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:citation <https://doi.org/10.1093/nar/gkw343>,
@@ -365174,18 +383486,18 @@ This tool takes a SAM/BAM file input and collects metrics that are specific for
 
 <https://bio.tools/picard_reordersam> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Sequence trace" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:citation <https://doi.org/10.1093/nar/gkw343>,
@@ -365203,18 +383515,18 @@ This tool takes a SAM/BAM file input and collects metrics that are specific for
 
 <https://bio.tools/picard_replacesamheader> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Sequence trace" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:citation <https://doi.org/10.1093/nar/gkw343>,
@@ -365232,18 +383544,18 @@ This tool takes a SAM/BAM file input and collects metrics that are specific for
 
 <https://bio.tools/picard_samtofastq> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1932" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1932" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:citation <https://doi.org/10.1093/nar/gkw343>,
@@ -365260,7 +383572,7 @@ This tool takes a SAM/BAM file input and collects metrics that are specific for
     biotools:primaryContact "Galaxy Support Team" .
 
 <https://bio.tools/picard_tools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_3071,
         edam:topic_3168 ;
@@ -365276,18 +383588,18 @@ This tool takes a SAM/BAM file input and collects metrics that are specific for
 
 <https://bio.tools/picardasmetrics> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:citation <https://doi.org/10.1093/nar/gkw343>,
@@ -365305,18 +383617,18 @@ This tool takes a SAM/BAM file input and collects metrics that are specific for
 
 <https://bio.tools/picardgcbiasmetrics> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:citation <https://doi.org/10.1093/nar/gkw343>,
@@ -365334,22 +383646,22 @@ This tool takes a SAM/BAM file input and collects metrics that are specific for
 
 <https://bio.tools/picardhsmetrics> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:citation <https://doi.org/10.1093/nar/gkw343>,
@@ -365367,14 +383679,14 @@ This tool takes a SAM/BAM file input and collects metrics that are specific for
 
 <https://bio.tools/picardinsertsize> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1093/nar/gkw343>,
@@ -365391,7 +383703,7 @@ This tool takes a SAM/BAM file input and collects metrics that are specific for
     biotools:primaryContact "Galaxy Support Team" .
 
 <https://bio.tools/piccaso> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0621,
@@ -365407,7 +383719,7 @@ picCASO is a MATLAB package to simulate the dynamics of spatial patterning of a
     sc:url "https://github.com/RamanLab/picCASO" .
 
 <https://bio.tools/pickgene> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -365427,18 +383739,16 @@ picCASO is a MATLAB package to simulate the dynamics of spatial patterning of a
 
 <https://bio.tools/pickle> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1009" ;
-            sc:name "Protein name" ;
-            sc:sameAs "http://edamontology.org/data_1009" ],
+            sc:additionalType "http://edamontology.org/data_1009" ;
+            sc:name "Protein name" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1025" ;
-            sc:name "Gene identifier" ;
-            sc:sameAs "http://edamontology.org/data_1025" ],
+            sc:additionalType "http://edamontology.org/data_1025" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Gene identifier" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2338" ;
-            sc:name "Ontology identifier" ;
-            sc:sameAs "http://edamontology.org/data_2338" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2338" ;
+            sc:name "Ontology identifier" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
@@ -365470,7 +383780,7 @@ picCASO is a MATLAB package to simulate the dynamics of spatial patterning of a
         "Nicholas Moschonas" .
 
 <https://bio.tools/pickpocket> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0736,
         edam:topic_3068,
         edam:topic_3474,
@@ -365490,22 +383800,22 @@ Stable releases can be downloaded from.""" ;
 
 <https://bio.tools/picky> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2093" ;
-            sc:name "Data reference" ;
-            sc:sameAs "http://edamontology.org/data_2093" ],
+            sc:additionalType "http://edamontology.org/data_3497" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "DNA sequence (raw)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3497" ;
-            sc:name "DNA sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_3497" ] ;
+            sc:additionalType "http://edamontology.org/data_2093" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Data reference" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ],
+            sc:additionalType "http://edamontology.org/data_1383" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
+            sc:name "Sequence alignment (nucleic acid)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1383" ;
-            sc:name "Sequence alignment (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1383" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence variations" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0199,
@@ -365526,7 +383836,7 @@ Stable releases can be downloaded from.""" ;
     biotools:primaryContact "Chia-Lin Wei" .
 
 <https://bio.tools/piclust> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0659,
@@ -365544,14 +383854,12 @@ Stable releases can be downloaded from.""" ;
 
 <https://bio.tools/picmi> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1016" ;
-            sc:name "Sequence position" ;
-            sc:sameAs "http://edamontology.org/data_1016" ] ;
+            sc:additionalType "http://edamontology.org/data_1016" ;
+            sc:name "Sequence position" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1276" ;
-            sc:name "Nucleic acid features" ;
-            sc:sameAs "http://edamontology.org/data_1276" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1276" ;
+            sc:name "Nucleic acid features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0102 ;
@@ -365570,7 +383878,7 @@ Stable releases can be downloaded from.""" ;
     biotools:primaryContact "Loredana Le Pera" .
 
 <https://bio.tools/picnic> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2640 ;
     sc:citation <https://doi.org/10.1073/pnas.1520213113> ;
@@ -365581,7 +383889,7 @@ Stable releases can be downloaded from.""" ;
     sc:url "https://sites.google.com/site/troncopackage/picnic" .
 
 <https://bio.tools/picoinversionminer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2815,
         edam:topic_3053 ;
@@ -365594,7 +383902,7 @@ Stable releases can be downloaded from.""" ;
     sc:url "http://faculty.cs.niu.edu/~hou/PicoInversion.html" .
 
 <https://bio.tools/picopore> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3168 ;
@@ -365611,18 +383919,15 @@ Stable releases can be downloaded from.""" ;
 
 <https://bio.tools/picr> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ],
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:name "Protein sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2907" ;
-            sc:name "Protein accession" ;
-            sc:sameAs "http://edamontology.org/data_2907" ] ;
+            sc:additionalType "http://edamontology.org/data_2907" ;
+            sc:name "Protein accession" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2907" ;
-            sc:name "Protein accession" ;
-            sc:sameAs "http://edamontology.org/data_2907" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2907" ;
+            sc:name "Protein accession" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3071,
         edam:topic_3345 ;
@@ -365643,7 +383948,7 @@ Stable releases can be downloaded from.""" ;
     biotools:primaryContact "PRIDE support" .
 
 <https://bio.tools/picrust> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_3174,
@@ -365661,7 +383966,7 @@ Stable releases can be downloaded from.""" ;
     biotools:primaryContact "Curtis Huttenhower" .
 
 <https://bio.tools/picrust2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_3174,
@@ -365683,7 +383988,7 @@ Stable releases can be downloaded from.""" ;
     biotools:primaryContact <https://orcid.org/0000-0002-6604-3009> .
 
 <https://bio.tools/pics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0160,
@@ -365706,7 +384011,7 @@ Stable releases can be downloaded from.""" ;
     biotools:primaryContact "Renan Sauteraud" .
 
 <https://bio.tools/pics2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0634,
@@ -365728,14 +384033,14 @@ Original PICS functionality extended with batch processing; result file download
 
 <https://bio.tools/pictar> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2099" ;
-            sc:name "Name" ;
-            sc:sameAs "http://edamontology.org/data_2099" ] ;
+            sc:additionalType "http://edamontology.org/data_2099" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Name" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2080" ;
-            sc:name "Database search results" ;
-            sc:sameAs "http://edamontology.org/data_2080" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2080" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Database search results" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0204 ;
     sc:citation <https://doi.org/10.1038/ng1536> ;
@@ -365748,8 +384053,31 @@ Original PICS functionality extended with batch processing; result file download
     sc:softwareHelp <http://pictar.mdc-berlin.de/> ;
     sc:url "http://pictar.mdc-berlin.de/" .
 
+<https://bio.tools/pictograph> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0199,
+        edam:topic_2269,
+        edam:topic_2640,
+        edam:topic_3299,
+        edam:topic_3676 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC367>,
+        "pmcid:PMC9344857",
+        "pubmed:35642899" ;
+    sc:description "Estimation of cancer cell fractions and clone trees from multi-region sequencing of tumors." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3227,
+        edam:operation_3233 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "PICTograph" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/KarchinLab/pictograph" .
+
 <https://bio.tools/picxaa-web> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -365767,14 +384095,13 @@ Original PICS functionality extended with batch processing; result file download
 
 <https://bio.tools/pid> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2344" ;
-            sc:name "Pathway ID (NCI-Nature)" ;
-            sc:sameAs "http://edamontology.org/data_2344" ] ;
+            sc:additionalType "http://edamontology.org/data_2344" ;
+            sc:name "Pathway ID (NCI-Nature)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2984" ;
-            sc:name "Pathway or network report" ;
-            sc:sameAs "http://edamontology.org/data_2984" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2984" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Pathway or network report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0602 ;
     sc:citation <https://doi.org/10.1093/nar/gkn653> ;
@@ -365785,7 +384112,7 @@ Original PICS functionality extended with batch processing; result file download
     sc:url "http://pid.nci.nih.gov/" .
 
 <https://bio.tools/pide> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3071,
@@ -365804,7 +384131,7 @@ Original PICS functionality extended with batch processing; result file download
     sc:url "http://www.gsi.de/bio-pide" .
 
 <https://bio.tools/pidna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0128,
@@ -365826,7 +384153,7 @@ Original PICS functionality extended with batch processing; result file download
     biotools:primaryContact "Center for Systems Biology, National Taiwan University" .
 
 <https://bio.tools/pids> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0780,
         edam:topic_2885,
@@ -365847,7 +384174,7 @@ The high variability and somatic stability of DNA fingerprints can be used to id
     sc:url "https://ssr.pids.online:8445/ssr" .
 
 <https://bio.tools/pie> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0130,
@@ -365869,7 +384196,7 @@ The high variability and somatic stability of DNA fingerprints can be used to id
     sc:url "https://www.ncbi.nlm.nih.gov/CBBresearch/Wilbur/IRET/PIE/" .
 
 <https://bio.tools/pieparty> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
         edam:topic_2229,
@@ -365884,8 +384211,30 @@ PieParty is a visualization tool allowing to represent every cell in single-cell
     sc:name "PieParty" ;
     sc:url "https://github.com/harbourlab/PieParty" .
 
+<https://bio.tools/pier> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0602,
+        edam:topic_0634,
+        edam:topic_3053,
+        edam:topic_3336,
+        edam:topic_3342 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAC379>,
+        "pmcid:PMC9252812",
+        "pubmed:35610036" ;
+    sc:description "Web-based facilities tailored for genetic target prioritisation harnessing human disease genetics, functional genomics and protein interactions." ;
+    sc:featureList edam:operation_0282,
+        edam:operation_3226,
+        edam:operation_4009 ;
+    sc:isAccessibleForFree true ;
+    sc:name "PiER" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://www.genetictargets.com/PiER" .
+
 <https://bio.tools/pifs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2885,
         edam:topic_3053,
@@ -365902,7 +384251,7 @@ PieParty is a visualization tool allowing to represent every cell in single-cell
     biotools:primaryContact "Mathieu Gautier" .
 
 <https://bio.tools/pigengene> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -365925,18 +384274,16 @@ PieParty is a visualization tool allowing to represent every cell in single-cell
 
 <https://bio.tools/pignon> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2302" ;
-            sc:name "STRING ID" ;
-            sc:sameAs "http://edamontology.org/data_2302" ],
+            sc:additionalType "http://edamontology.org/data_2628" ;
+            sc:name "BioGRID interaction ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2628" ;
-            sc:name "BioGRID interaction ID" ;
-            sc:sameAs "http://edamontology.org/data_2628" ] ;
+            sc:additionalType "http://edamontology.org/data_2302" ;
+            sc:name "STRING ID" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3932" ;
-            sc:name "Q-value" ;
-            sc:sameAs "http://edamontology.org/data_3932" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3932" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Q-value" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -365961,14 +384308,12 @@ PieParty is a visualization tool allowing to represent every cell in single-cell
 
 <https://bio.tools/pigs> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:name "Protein sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:name "Protein structure" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082 ;
     sc:citation <https://doi.org/10.1038/nprot.2014.189>,
@@ -365986,7 +384331,7 @@ PieParty is a visualization tool allowing to represent every cell in single-cell
     biotools:primaryContact "Paolo Marcatili" .
 
 <https://bio.tools/pigspro> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_1317 ;
     sc:citation "pmcid:PMC5570210",
@@ -365997,7 +384342,7 @@ PieParty is a visualization tool allowing to represent every cell in single-cell
     sc:url "https://cassandra.med.uniroma1.it/pigspro/" .
 
 <https://bio.tools/piims> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0130,
@@ -366017,8 +384362,31 @@ Most biological processes involve multiple proteins interacting with each other.
     sc:name "PIIMS" ;
     sc:url "http://chemyang.ccnu.edu.cn/ccb/server/PIIMS/index.php" .
 
+<https://bio.tools/pikachu> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2301" ;
+            sc:name "SMILES string" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_2258,
+        edam:topic_3172,
+        edam:topic_3314 ;
+    sc:citation <https://doi.org/10.21203/RS.3.RS-1239072/V1> ;
+    sc:description "A Python-based Informatics Kit for Analysing Chemical Units." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_1812 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "PIKAChU" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://github.com/BTheDragonMaster/pikachu/wiki> ;
+    sc:url "https://github.com/BTheDragonMaster/pikachu" .
+
 <https://bio.tools/pike-r2p> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0108,
@@ -366044,7 +384412,7 @@ Most biological processes involve multiple proteins interacting with each other.
     sc:url "https://github.com/JieZheng-ShanghaiTech/PIKE-R2P" .
 
 <https://bio.tools/pileline> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
@@ -366073,7 +384441,7 @@ Most biological processes involve multiple proteins interacting with each other.
     biotools:primaryContact <http://orcid.org/0000-0002-4146-0551> .
 
 <https://bio.tools/piler> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0798,
         edam:topic_2885 ;
@@ -366089,29 +384457,45 @@ Most biological processes involve multiple proteins interacting with each other.
     sc:url "https://www.drive5.com/piler/" ;
     biotools:primaryContact "Robert C. Edgar" .
 
-<https://bio.tools/piler-df> a sc:SoftwareApplication ;
-    sc:description "PILER is a tool for identification and classification of genomic repeats." ;
-    sc:name "PILER" ;
-    sc:url "https://www.drive5.com/piler/" .
+<https://bio.tools/pilercr> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0157 ;
+    sc:citation <https://doi.org/10.1186/1471-2105-8-18>,
+        "pmcid:PMC1790904",
+        "pubmed:17239253" ;
+    sc:description "software for finding CRISPR repeats" ;
+    sc:featureList edam:operation_0237 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "pilercr" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://www.drive5.com/pilercr/" .
 
 <https://bio.tools/pileup2cov> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3071,
         edam:topic_3168 ;
@@ -366129,14 +384513,14 @@ Most biological processes involve multiple proteins interacting with each other.
 
 <https://bio.tools/pileup_to_vcf> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence variations" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:citation <https://doi.org/10.1093/nar/gkw343>,
@@ -366152,7 +384536,7 @@ Most biological processes involve multiple proteins interacting with each other.
     biotools:primaryContact "Galaxy Support Team" .
 
 <https://bio.tools/pilgrm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -366169,7 +384553,7 @@ Most biological processes involve multiple proteins interacting with each other.
     biotools:primaryContact "Greene Lab" .
 
 <https://bio.tools/piling> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_3382,
         edam:topic_3474 ;
@@ -366189,9 +384573,12 @@ A JavaScript Library for Interactive Visual Piling.""" ;
     sc:url "https://piling.js.org" .
 
 <https://bio.tools/pilon> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196 ;
+    sc:citation <https://doi.org/10.1371/journal.pone.0112963>,
+        "pmcid:PMC4237348",
+        "pubmed:25409509" ;
     sc:description "Read alignment analysis to diagnose, report, and automatically improve de novo genome assemblies." ;
     sc:featureList edam:operation_0310,
         edam:operation_2945,
@@ -366205,7 +384592,7 @@ A JavaScript Library for Interactive Visual Piling.""" ;
     sc:url "http://www.broadinstitute.org/software/pilon/" .
 
 <https://bio.tools/pimba> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0637,
         edam:topic_0769,
@@ -366221,8 +384608,26 @@ A JavaScript Library for Interactive Visual Piling.""" ;
     sc:url "https://github.com/reinator/pimba" ;
     biotools:primaryContact <https://orcid.org/0000-0003-0054-3438> .
 
+<https://bio.tools/pimco> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0820,
+        edam:topic_3444 ;
+    sc:citation <https://doi.org/10.1002/HBM.25980>,
+        "pubmed:35730989" ;
+    sc:description "Voxel-wise intermodal coupling analysis of two or more modalities using local covariance decomposition." ;
+    sc:featureList edam:operation_0269,
+        edam:operation_3659 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "pIMCo" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/hufengling/pIMCo" .
+
 <https://bio.tools/pimd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0202,
         edam:topic_0605,
         edam:topic_3336,
@@ -366240,10 +384645,10 @@ Abstract：The accumulation of various types of drug informatics data and comput
 
 <https://bio.tools/pims_lims> a sc:SoftwareApplication ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2531" ;
-            sc:name "Experiment report" ;
-            sc:sameAs "http://edamontology.org/data_2531" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2531" ;
+            sc:encodingFormat "http://edamontology.org/format_3468" ;
+            sc:name "Experiment report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0607 ;
@@ -366262,8 +384667,31 @@ Abstract：The accumulation of various types of drug informatics data and comput
     sc:url "https://www.limswiki.org/index.php/PiMS" ;
     biotools:primaryContact "Chris Morris" .
 
+<https://bio.tools/pin_hic> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0196,
+        edam:topic_0621,
+        edam:topic_3168,
+        edam:topic_3175 ;
+    sc:citation <https://doi.org/10.1186/S12859-021-04453-5>,
+        "pmcid:PMC8627104",
+        "pubmed:34837944" ;
+    sc:description "Efficient iterative Hi-C scaffolder based on N-best neighbors." ;
+    sc:featureList edam:operation_0479,
+        edam:operation_0524,
+        edam:operation_3216,
+        edam:operation_3219 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "pin_hic" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/dfguan/pin_hic" .
+
 <https://bio.tools/pina> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0128,
@@ -366286,7 +384714,7 @@ Abstract：The accumulation of various types of drug informatics data and comput
     biotools:primaryContact "Jianmin Wu" .
 
 <https://bio.tools/pinalog> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0602,
@@ -366301,7 +384729,7 @@ Abstract：The accumulation of various types of drug informatics data and comput
     sc:url "http://www.sbg.bio.ic.ac.uk/~pinalog/index.html" .
 
 <https://bio.tools/pinaweb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0128,
@@ -366317,7 +384745,7 @@ Abstract：The accumulation of various types of drug informatics data and comput
     biotools:primaryContact <https://orcid.org/0000-0002-1977-1214> .
 
 <https://bio.tools/pincage> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0203,
@@ -366336,7 +384764,7 @@ Abstract：The accumulation of various types of drug informatics data and comput
     sc:url "http://moma.ki.au.dk/prj/pincage/" .
 
 <https://bio.tools/pincer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0199,
         edam:topic_0749,
@@ -366354,18 +384782,18 @@ Abstract：The accumulation of various types of drug informatics data and comput
 
 <https://bio.tools/pindel> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ],
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Sequence trace" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ] ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3175,
         edam:topic_3325 ;
@@ -366389,18 +384817,18 @@ Abstract：The accumulation of various types of drug informatics data and comput
 
 <https://bio.tools/pindel2vcf> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence variations" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btp394>,
@@ -366418,7 +384846,7 @@ Abstract：The accumulation of various types of drug informatics data and comput
     biotools:primaryContact "Galaxy Support Team" .
 
 <https://bio.tools/pine> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
         edam:topic_0128,
@@ -366439,7 +384867,7 @@ Ontology and Pathway Term Status.""" ;
     sc:url "https://github.com/csmc-vaneykjlab/pine" .
 
 <https://bio.tools/pine-cone> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_2885,
@@ -366459,7 +384887,7 @@ CRISPR-based technologies are paramount in genome engineering and synthetic biol
     sc:url "https://github.com/xiaowanglab/PINE-CONE" .
 
 <https://bio.tools/pines> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0204,
@@ -366484,7 +384912,7 @@ Functional characterization of the noncoding genome is essential for the biologi
     sc:url "http://genetics.bwh.harvard.edu/pines/" .
 
 <https://bio.tools/pinet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
         edam:topic_0154,
@@ -366503,7 +384931,7 @@ PiNET server is a server for mapping and annotaion of protein peptides.""" ;
     sc:url "http://www.pinet-server.org/pinet/peptideToProtein" .
 
 <https://bio.tools/pinet-ppi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0166,
@@ -366523,7 +384951,7 @@ PiNET server is a server for mapping and annotaion of protein peptides.""" ;
     biotools:primaryContact <https://orcid.org/0000-0003-1860-0912> .
 
 <https://bio.tools/ping> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3125,
@@ -366548,22 +384976,18 @@ PiNET server is a server for mapping and annotaion of protein peptides.""" ;
 
 <https://bio.tools/pingo> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1082" ;
-            sc:name "Pathway or network identifier" ;
-            sc:sameAs "http://edamontology.org/data_1082" ],
+            sc:additionalType "http://edamontology.org/data_1082" ;
+            sc:name "Pathway or network identifier" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2338" ;
-            sc:name "Ontology identifier" ;
-            sc:sameAs "http://edamontology.org/data_2338" ] ;
+            sc:additionalType "http://edamontology.org/data_2338" ;
+            sc:name "Ontology identifier" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1669" ;
-            sc:name "P-value" ;
-            sc:sameAs "http://edamontology.org/data_1669" ],
+            sc:additionalType "http://edamontology.org/data_1669" ;
+            sc:name "P-value" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1025" ;
-            sc:name "Gene identifier" ;
-            sc:sameAs "http://edamontology.org/data_1025" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1025" ;
+            sc:name "Gene identifier" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0085 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btr045> ;
@@ -366580,7 +385004,7 @@ PiNET server is a server for mapping and annotaion of protein peptides.""" ;
     biotools:primaryContact "Steven Maere" .
 
 <https://bio.tools/pinir> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0154,
@@ -366602,7 +385026,7 @@ PiNET server is a server for mapping and annotaion of protein peptides.""" ;
     sc:url "https://pinir.ncl.res.in" .
 
 <https://bio.tools/pinn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3047,
         edam:topic_3314,
@@ -366623,7 +385047,7 @@ PiNN is a Python library built on top of TensorFlow for building atomic neural n
     sc:url "https://github.com/Teoroo-CMC/PiNN/" .
 
 <https://bio.tools/pinpor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0601,
         edam:topic_2533,
@@ -366643,26 +385067,26 @@ PiNN is a Python library built on top of TensorFlow for building atomic neural n
 
 <https://bio.tools/pint> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3115" ;
-            sc:name "Microarray metadata" ;
-            sc:sameAs "http://edamontology.org/data_3115" ],
+            sc:additionalType "http://edamontology.org/data_3112" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "Gene expression matrix" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3112" ;
-            sc:name "Gene expression matrix" ;
-            sc:sameAs "http://edamontology.org/data_3112" ] ;
+            sc:additionalType "http://edamontology.org/data_3115" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "Microarray metadata" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1772" ;
-            sc:name "Score" ;
-            sc:sameAs "http://edamontology.org/data_1772" ],
+            sc:additionalType "http://edamontology.org/data_3111" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "Processed microarray data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ],
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "Plot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3111" ;
-            sc:name "Processed microarray data" ;
-            sc:sameAs "http://edamontology.org/data_3111" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1772" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "Score" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0085,
@@ -366686,7 +385110,7 @@ PiNN is a Python library built on top of TensorFlow for building atomic neural n
     biotools:primaryContact "Olli-Pekka Huovilainen" .
 
 <https://bio.tools/pint_pathways> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0621,
@@ -366708,7 +385132,7 @@ PiNN is a Python library built on top of TensorFlow for building atomic neural n
     biotools:primaryContact "PINT Support" .
 
 <https://bio.tools/pinta> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0602,
@@ -366729,7 +385153,7 @@ PiNN is a Python library built on top of TensorFlow for building atomic neural n
     biotools:primaryContact "Yves Moreau" .
 
 <https://bio.tools/pintail> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0099 ;
@@ -366740,8 +385164,30 @@ PiNN is a Python library built on top of TensorFlow for building atomic neural n
     sc:softwareVersion "1.1" ;
     sc:url "http://www.softpedia.com/get/Science-CAD/Pintail.shtml" .
 
+<https://bio.tools/pintmf> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_2640,
+        edam:topic_3170,
+        edam:topic_3360 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAB786>,
+        "pmcid:PMC8796362",
+        "pubmed:34849583" ;
+    sc:description "Penalized Integrative Matrix Factorization method for Multi-omics data." ;
+    sc:featureList edam:operation_3432,
+        edam:operation_3435,
+        edam:operation_3659,
+        edam:operation_3936 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "PIntMF" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/mpierrejean/pintmf" .
+
 <https://bio.tools/pintron> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3308,
         edam:topic_3320,
@@ -366764,7 +385210,7 @@ PiNN is a Python library built on top of TensorFlow for building atomic neural n
         "Yuri Pirola" .
 
 <https://bio.tools/pints> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_2275,
@@ -366780,7 +385226,7 @@ PiNN is a Python library built on top of TensorFlow for building atomic neural n
         "Yvonne Lara" .
 
 <https://bio.tools/pinv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_2259 ;
@@ -366796,10 +385242,10 @@ PiNN is a Python library built on top of TensorFlow for building atomic neural n
 
 <https://bio.tools/pio> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2299" ;
-            sc:name "Gene name" ;
-            sc:sameAs "http://edamontology.org/data_2299" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2299" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Gene name" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
@@ -366821,7 +385267,7 @@ PiNN is a Python library built on top of TensorFlow for building atomic neural n
     sc:url "https://vincentalcazer.shinyapps.io/Panel_informativity_optimizer/" .
 
 <https://bio.tools/pip-snp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0625,
@@ -366845,7 +385291,7 @@ PiNN is a Python library built on top of TensorFlow for building atomic neural n
     sc:url "https://github.com/noble-research-institute/PIP_SNP" .
 
 <https://bio.tools/pipasic> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121 ;
     sc:citation "pubmed:24931978" ;
@@ -366860,7 +385306,7 @@ PiNN is a Python library built on top of TensorFlow for building atomic neural n
     sc:url "http://sourceforge.net/projects/pipasic/" .
 
 <https://bio.tools/pipealign> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -366888,7 +385334,7 @@ PiNN is a Python library built on top of TensorFlow for building atomic neural n
     sc:url "http://www.lbgi.fr/pipealign" .
 
 <https://bio.tools/pipecomp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0769,
         edam:topic_3170 ;
@@ -366902,60 +385348,30 @@ PiNN is a Python library built on top of TensorFlow for building atomic neural n
     sc:name "pipeComp" ;
     sc:url "https://github.com/plger/pipeComp" .
 
-<https://bio.tools/pipeline> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0091,
-        edam:topic_0203,
-        edam:topic_0602,
-        edam:topic_0769,
-        edam:topic_3170 ;
-    sc:citation <https://doi.org/10.7287/PEERJ.PREPRINTS.27317V2> ;
-    sc:description """A comprehensive RNA-Seq pipeline includes meta-analysis, interactivity and automatic reporting.
-
-There are many methods available for each phase of the RNA-Seq analysis and each of them uses different algorithms. It is therefore useful to identify a pipeline that combines the best tools in terms of time and results. For this purpose, we compared five different pipelines, obtained by combining the most used tools in RNA-Seq analysis. Using RNA-Seq data on samples of different Acute Myeloid Leukemia (AML) cell lines, we compared five pipelines from the alignment to the differential expression analysis (DEA). For each one we evaluated the peak of RAM and time and then compared the differentially expressed genes identified by each pipeline.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'recurs', 'meta-analysis', 'DEA', 'HISAT2' (bio.tools/hisat2)""" ;
-    sc:featureList edam:operation_3223,
-        edam:operation_3454,
-        edam:operation_3680,
-        edam:operation_3800 ;
-    sc:name "pipeline" ;
-    sc:url "https://doi.org/10.7287/PEERJ.PREPRINTS.27317V2" .
-
-<https://bio.tools/pipeline-MoNaS> a sc:SoftwareApplication ;
+<https://bio.tools/pipeit2> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
-        edam:topic_0625,
-        edam:topic_0632,
-        edam:topic_3168,
-        edam:topic_3512 ;
-    sc:citation <https://doi.org/10.1371/JOURNAL.PNTD.0007818>,
-        "pmcid:PMC6886866",
-        "pubmed:31738756" ;
-    sc:description """High-throughput genotyping of a full voltage-gated sodium channel gene via genomic DNA using target capture sequencing and analytical pipeline MoNaS to discover novel insecticide resistance mutations.
-
-A pipeline to genotype mosquito's voltage-gated sodium channel genes using NGS data.
-
-(Mosquito Na+ channel mutation Search).
-
-A pipeline to genotype mosquito's voltage-gated sodium channel genes using NGS data See detailed description in the GitHub repository.(https://github.com/ItokawaK/MoNaS/blob/master/README.md).
-
-An automated pipeline to genotype mosquito's voltage-gated sodium channel genes using NGS data.
-
-MoNaS (Mosquito Na+ channel mutation Search) is an automated pipeline conducting genotyping of voltage-gated sodium channel (VGSC) in mosquitos from NGS reads.
-
-!!Upon starting your analysis, we will consider you have allowed the following condition!!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'MoNaS', 'VGSC', 'insecticide resistance VGSC', 'VGSC CDSs'""" ;
-    sc:featureList edam:operation_3185,
-        edam:operation_3192,
-        edam:operation_3196,
-        edam:operation_3216 ;
-    sc:name "pipeline-MoNaS" ;
-    sc:url "https://github.com/ItokawaK/MoNaS" .
+        edam:topic_0769,
+        edam:topic_2640,
+        edam:topic_3577,
+        edam:topic_3676 ;
+    sc:citation <https://doi.org/10.1007/978-1-0716-2293-3_12>,
+        "pubmed:35751816" ;
+    sc:description "Somatic Variant Calling Workflow for Ion Torrent Sequencing Data." ;
+    sc:featureList edam:operation_3227,
+        edam:operation_3675,
+        edam:operation_3695 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "PipeIT2" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/ckynlab/PipeIT2" .
 
 <https://bio.tools/pipeline_pilot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0196,
@@ -366978,7 +385394,7 @@ MoNaS (Mosquito Na+ channel mutation Search) is an automated pipeline conducting
     biotools:primaryContact "Contact form" .
 
 <https://bio.tools/pipelinedog> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0607,
@@ -366995,7 +385411,7 @@ MoNaS (Mosquito Na+ channel mutation Search) is an automated pipeline conducting
         "Yazhou Sun" .
 
 <https://bio.tools/pipeliner> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3168,
         edam:topic_3524 ;
@@ -367011,7 +385427,7 @@ MoNaS (Mosquito Na+ channel mutation Search) is an automated pipeline conducting
     biotools:primaryContact "B. Nevado" .
 
 <https://bio.tools/pipemaster> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3299,
         edam:topic_3474 ;
@@ -367027,10 +385443,9 @@ PipeMaster is an R-package to build demographic models and simulate data under t
 
 <https://bio.tools/pipenn> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:name "Protein sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0128,
@@ -367050,8 +385465,26 @@ PipeMaster is an R-package to build demographic models and simulate data under t
         "Windows" ;
     sc:url "https://github.com/ibivu/pipenn/" .
 
+<https://bio.tools/pipette_show> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0769,
+        edam:topic_3070 ;
+    sc:citation <https://doi.org/10.1021/ACSSYNBIO.1C00494>,
+        "pmcid:PMC8859850",
+        "pubmed:35021620" ;
+    sc:description "An Open Source Web Application to Support Pipetting into Microplates." ;
+    sc:featureList edam:operation_0337 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "Pipette Show" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://pipette-show.de" .
+
 <https://bio.tools/piphillin> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2815,
         edam:topic_3174,
@@ -367070,7 +385503,7 @@ PipeMaster is an R-package to build demographic models and simulate data under t
     biotools:primaryContact "Support" .
 
 <https://bio.tools/pipipes> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0203,
@@ -367087,7 +385520,7 @@ PipeMaster is an R-package to build demographic models and simulate data under t
     sc:url "http://bowhan.github.io/piPipes/" .
 
 <https://bio.tools/pipmaker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0654,
@@ -367111,18 +385544,18 @@ PipeMaster is an R-package to build demographic models and simulate data under t
 
 <https://bio.tools/pipmir> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1383" ;
-            sc:name "Sequence alignment (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1383" ],
+            sc:additionalType "http://edamontology.org/data_0925" ;
+            sc:encodingFormat "http://edamontology.org/format_3009" ;
+            sc:name "Sequence assembly" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0925" ;
-            sc:name "Sequence assembly" ;
-            sc:sameAs "http://edamontology.org/data_0925" ] ;
+            sc:additionalType "http://edamontology.org/data_1383" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Sequence alignment (nucleic acid)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1270" ;
-            sc:name "Feature table" ;
-            sc:sameAs "http://edamontology.org/data_1270" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1270" ;
+            sc:encodingFormat "http://edamontology.org/format_2206" ;
+            sc:name "Feature table" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3308 ;
     sc:citation <https://doi.org/10.1101/gr.123547.111> ;
@@ -367137,7 +385570,7 @@ PipeMaster is an R-package to build demographic models and simulate data under t
     sc:url "https://ohlerlab.mdc-berlin.de/software/Pipeline_for_the_Identification_of_Plant_miRNAs_84/" .
 
 <https://bio.tools/pipo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_2640,
@@ -367157,7 +385590,7 @@ PipeMaster is an R-package to build demographic models and simulate data under t
     sc:url "https://pipo.vhio.net/" .
 
 <https://bio.tools/pipprofiler> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "PIPprofileR is a tool to easily generate and explore Profiles of Percent Identical Positions from a fasta file (nucloetide or peptide sequences)." ;
     sc:isAccessibleForFree true ;
     sc:license "BSD-3-Clause" ;
@@ -367168,7 +385601,7 @@ PipeMaster is an R-package to build demographic models and simulate data under t
     sc:url "https://github.com/IFB-ElixirFr/PIPprofileR" .
 
 <https://bio.tools/pipsa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
@@ -367187,18 +385620,18 @@ PipeMaster is an R-package to build demographic models and simulate data under t
 
 <https://bio.tools/piqed> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2093" ;
-            sc:name "Data reference" ;
-            sc:sameAs "http://edamontology.org/data_2093" ],
+            sc:additionalType "http://edamontology.org/data_2093" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Data reference" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3483" ;
-            sc:name "Spectrum" ;
-            sc:sameAs "http://edamontology.org/data_3483" ] ;
+            sc:additionalType "http://edamontology.org/data_3483" ;
+            sc:encodingFormat "http://edamontology.org/format_3245" ;
+            sc:name "Spectrum" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2032" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0601,
         edam:topic_3520 ;
@@ -367217,18 +385650,18 @@ PipeMaster is an R-package to build demographic models and simulate data under t
 
 <https://bio.tools/piqmie> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ],
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ] ;
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Mass spectrometry data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:encodingFormat "http://edamontology.org/format_3621" ;
+            sc:name "Mass spectrometry data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0121,
@@ -367255,7 +385688,7 @@ PipeMaster is an R-package to build demographic models and simulate data under t
         "Roland Kanaar" .
 
 <https://bio.tools/pique> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0114,
@@ -367276,14 +385709,13 @@ The pique package is a high efficiency peak finder for ChIP-seq.""" ;
 
 <https://bio.tools/pir> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0989" ;
-            sc:name "Protein identifier" ;
-            sc:sameAs "http://edamontology.org/data_0989" ] ;
+            sc:additionalType "http://edamontology.org/data_0989" ;
+            sc:name "Protein identifier" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Sequence record" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1093/nar/gkg040> ;
@@ -367297,7 +385729,7 @@ The pique package is a high efficiency peak finder for ChIP-seq.""" ;
     sc:url "http://pir.georgetown.edu/" .
 
 <https://bio.tools/piranha> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0099,
@@ -367316,7 +385748,7 @@ The pique package is a high efficiency peak finder for ChIP-seq.""" ;
     sc:url "http://www.bioinformatics.sussex.ac.uk/PIRANHA" .
 
 <https://bio.tools/piranha-peak> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0602,
@@ -367329,8 +385761,31 @@ The pique package is a high efficiency peak finder for ChIP-seq.""" ;
     sc:softwareHelp <http://smithlabresearch.org/software/piranha/> ;
     sc:url "http://smithlabresearch.org/software/piranha/" .
 
+<https://bio.tools/pirbase> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0659,
+        edam:topic_3168,
+        edam:topic_3295,
+        edam:topic_3320,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAB1012>,
+        "pmcid:PMC8728152",
+        "pubmed:34871445" ;
+    sc:description "piRBase is a manually curated resource of piRNAs, which focused on piRNA function analyses as well as piRNA annotation." ;
+    sc:featureList edam:operation_2422,
+        edam:operation_3208,
+        edam:operation_3432,
+        edam:operation_3435 ;
+    sc:isAccessibleForFree true ;
+    sc:name "piRBase" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://bigdata.ibp.ac.cn/piRBase" .
+
 <https://bio.tools/pirna-eqtl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0659,
         edam:topic_2640,
@@ -367350,7 +385805,7 @@ piRBase is a manually curated resource of piRNAs, which focused on piRNA functio
     sc:url "http://www.regulatoryrna.org/database/piRNA/" .
 
 <https://bio.tools/pirnadb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -367371,7 +385826,7 @@ piRBase is a manually curated resource of piRNAs, which focused on piRNA functio
     sc:url "https://www.pirnadb.org/" .
 
 <https://bio.tools/pirnapre> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0659,
@@ -367385,7 +385840,7 @@ piRBase is a manually curated resource of piRNAs, which focused on piRNA functio
     sc:url "http://www.regulatoryrna.org/software/piRNA/piRNA_target_mRNA/index.php" .
 
 <https://bio.tools/pirnapred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0203,
         edam:topic_0659,
@@ -367403,8 +385858,31 @@ piRNAPred is an algorithm for the computational identification of piRNAs using f
     sc:name "piRNAPred" ;
     sc:url "https://github.com/IshaMonga/piRNAPred" .
 
+<https://bio.tools/pirnaquest> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0621,
+        edam:topic_0634,
+        edam:topic_0659,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.1080/15476286.2021.2010960>,
+        "pmcid:PMC8786328",
+        "pubmed:34965192" ;
+    sc:description "An updated resource for searching through the piRNAome of multiple species." ;
+    sc:featureList edam:operation_0313,
+        edam:operation_2421,
+        edam:operation_2422 ;
+    sc:isAccessibleForFree true ;
+    sc:name "piRNAQuest" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareVersion "2" ;
+    sc:url "http://dibresources.jcbose.ac.in/zhumur/pirnaquest2" .
+
 <https://bio.tools/pirouette> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3168,
         edam:topic_3293 ;
@@ -367417,7 +385895,7 @@ piRNAPred is an algorithm for the computational identification of piRNAs using f
     sc:url "https://github.com/richelbilderbeek/pirouette_example_30/blob/master/README.md" .
 
 <https://bio.tools/pirpheno> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_0659,
         edam:topic_3322,
@@ -367431,12 +385909,30 @@ piRNAPred is an algorithm for the computational identification of piRNAs using f
     sc:name "piRPheno" ;
     sc:url "http://www.biomedical-web.com/pirpheno" .
 
+<https://bio.tools/pirs> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_3511 ;
+    sc:citation <https://doi.org/10.1093/bioinformatics/bts187>,
+        "pubmed:22508794" ;
+    sc:description """pIRS is a program for simulating paired-end reads from a reference genome.  It
+is optimized for simulating reads similar to those generated from the Illumina
+platform.""" ;
+    sc:featureList edam:operation_2426 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-2.0" ;
+    sc:name "pirs" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/galaxy001/pirs" .
+
 <https://bio.tools/pirscan> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3497" ;
-            sc:name "DNA sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_3497" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3497" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "DNA sequence (raw)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0659 ;
     sc:citation <https://doi.org/10.1093/nar/gky277> ;
@@ -367454,14 +385950,13 @@ piRNAPred is an algorithm for the computational identification of piRNAs using f
 
 <https://bio.tools/pirsf> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1136" ;
-            sc:name "PIRSF ID" ;
-            sc:sameAs "http://edamontology.org/data_1136" ] ;
+            sc:additionalType "http://edamontology.org/data_1136" ;
+            sc:name "PIRSF ID" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0907" ;
-            sc:name "Protein family report" ;
-            sc:sameAs "http://edamontology.org/data_0907" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0907" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Protein family report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0623 ;
@@ -367476,7 +385971,7 @@ piRNAPred is an algorithm for the computational identification of piRNAs using f
     sc:url "http://pir.georgetown.edu/pirwww/dbinfo/pirsf.shtml" .
 
 <https://bio.tools/pisa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0092,
@@ -367497,7 +385992,7 @@ piRNAPred is an algorithm for the computational identification of piRNAs using f
     sc:url "http://www.ebi.ac.uk/msd-srv/prot_int/pistart.html" .
 
 <https://bio.tools/pisa-sparky> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0153,
         edam:topic_0593,
         edam:topic_0769,
@@ -367526,7 +386021,7 @@ The mobile element that conveys methicillin resistance to staph includes a gene
     sc:url "https://sbgrid.org" .
 
 <https://bio.tools/pisa-tree> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application",
         "Script" ;
@@ -367563,7 +386058,7 @@ In addition, two related R packages were developed: pisar -- R support for pISA-
     biotools:primaryContact <https://orcid.org/0000-0001-7484-6031> .
 
 <https://bio.tools/pisces> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -367583,7 +386078,7 @@ In addition, two related R packages were developed: pisar -- R support for pISA-
         "Roland Dunbrack" .
 
 <https://bio.tools/pisces-fish> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_0621 ;
     sc:citation <https://doi.org/10.1016/J.ENVSOFT.2020.104703>,
@@ -367598,7 +386093,7 @@ In addition, two related R packages were developed: pisar -- R support for pISA-
     biotools:primaryContact "Mike Cyterski" .
 
 <https://bio.tools/pisces-mrna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2885,
         edam:topic_3055,
@@ -367623,10 +386118,9 @@ PISCES: pipeline for rapid transcript quantitation, genetic fingerprinting, and
 
 <https://bio.tools/pita> a sc:SoftwareApplication ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1537" ;
-            sc:name "Protein structure report" ;
-            sc:sameAs "http://edamontology.org/data_1537" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1537" ;
+            sc:name "Protein structure report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_1317,
         edam:topic_2814 ;
@@ -367645,7 +386139,7 @@ PISCES: pipeline for rapid transcript quantitation, genetic fingerprinting, and
     biotools:primaryContact "Roman Laskowski" .
 
 <https://bio.tools/pitufo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2259 ;
@@ -367660,7 +386154,7 @@ PISCES: pipeline for rapid transcript quantitation, genetic fingerprinting, and
     sc:url "http://sites.google.com/site/pitufosoftware" .
 
 <https://bio.tools/pius> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3308,
         edam:topic_3520 ;
@@ -367675,7 +386169,7 @@ PISCES: pipeline for rapid transcript quantitation, genetic fingerprinting, and
     sc:url "http://dtai.cs.kuleuven.be/ml/systems/pius/" .
 
 <https://bio.tools/pivot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0128,
@@ -367693,7 +386187,7 @@ PISCES: pipeline for rapid transcript quantitation, genetic fingerprinting, and
     sc:url "http://acgt.cs.tau.ac.il/pivot/" .
 
 <https://bio.tools/pivotal> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
         edam:topic_0199,
@@ -367715,7 +386209,7 @@ PIVOTAL is a computational tool for prioritizing variants of uncertain significa
     sc:url "http://pivotal.yulab.org" .
 
 <https://bio.tools/pivw> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3517 ;
@@ -367731,7 +386225,7 @@ PIVOTAL is a computational tool for prioritizing variants of uncertain significa
     sc:url "https://github.com/siqixu/mr.pivw" .
 
 <https://bio.tools/pixie> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3172,
@@ -367748,7 +386242,7 @@ PIVOTAL is a computational tool for prioritizing variants of uncertain significa
         "Thomas Metz" .
 
 <https://bio.tools/pixy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0625,
         edam:topic_2269,
@@ -367769,14 +386263,8 @@ Unbiased estimation of nucleotide diversity within and between populations.""" ;
     sc:softwareHelp <https://pixy.readthedocs.io/en/latest/> ;
     sc:url "https://anaconda.org/conda-forge/pixy" .
 
-<https://bio.tools/piya_sen> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
-    sc:description "Piya Sen Kolkata Escorts Our Elite Call Girls and VIP escort in Kolkata are waiting independent Female Model Housewife Girl Escorts Agency +917595811660" ;
-    sc:name "piya sen" ;
-    sc:url "https://www.piyasen.com" .
-
 <https://bio.tools/pizzly> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3512 ;
     sc:description "Fast fusion detection using kallisto" ;
     sc:featureList edam:operation_0415 ;
@@ -367784,7 +386272,7 @@ Unbiased estimation of nucleotide diversity within and between populations.""" ;
     sc:url "https://github.com/pmelsted/pizzly" .
 
 <https://bio.tools/pjd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3170,
@@ -367801,7 +386289,7 @@ Unbiased estimation of nucleotide diversity within and between populations.""" ;
     biotools:primaryContact <https://orcid.org/0000-0001-6818-6380> .
 
 <https://bio.tools/pkconverter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_3375,
         edam:topic_3407 ;
@@ -367819,7 +386307,7 @@ Pharmacokinetics is the study of drug absorption, distribution, metabolism, and
     sc:url "https://ek-lee.shinyapps.io/PKconverter/" .
 
 <https://bio.tools/pkd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -367836,7 +386324,7 @@ Pharmacokinetics is the study of drug absorption, distribution, metabolism, and
     sc:url "http://enzyme.ucd.ie/cgi-bin/pKD/server_start.cgi" .
 
 <https://bio.tools/pkgdeptools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3316 ;
@@ -367854,16 +386342,33 @@ Pharmacokinetics is the study of drug absorption, distribution, metabolism, and
     sc:url "http://bioconductor.org/packages/release/bioc/html/pkgDepTools.html" ;
     biotools:primaryContact "Seth Falcon" .
 
+<https://bio.tools/pkgndep> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0091 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC449>,
+        "pubmed:35801905" ;
+    sc:description "A tool for analyzing dependency heaviness of R packages." ;
+    sc:featureList edam:operation_2422 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "pkgndep" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://cran.r-project.org/web/packages/pkgndep/pkgndep.pdf> ;
+    sc:url "https://cran.r-project.org/package=pkgndep" .
+
 <https://bio.tools/pklfilemerger> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ] ;
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:encodingFormat "http://edamontology.org/format_3653" ;
+            sc:name "Mass spectrometry data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:encodingFormat "http://edamontology.org/format_3653" ;
+            sc:name "Mass spectrometry data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3366,
@@ -367879,7 +386384,7 @@ Pharmacokinetics is the study of drug absorption, distribution, metabolism, and
     sc:url "http://www.uib.no/en/rg/probe/66698/pklfilemerger" .
 
 <https://bio.tools/pknot-v2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0130,
@@ -367897,7 +386402,7 @@ Pharmacokinetics is the study of drug absorption, distribution, metabolism, and
     sc:url "http://pknot.life.nctu.edu.tw/" .
 
 <https://bio.tools/pknots> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0099 ;
@@ -367910,7 +386415,7 @@ Pharmacokinetics is the study of drug absorption, distribution, metabolism, and
     sc:url "http://eddylab.org/software.html" .
 
 <https://bio.tools/pknotsrg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0097,
@@ -367933,7 +386438,7 @@ Pharmacokinetics is the study of drug absorption, distribution, metabolism, and
     biotools:primaryContact "Support" .
 
 <https://bio.tools/pkpdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
@@ -367958,7 +386463,7 @@ Pharmacokinetics is the study of drug absorption, distribution, metabolism, and
     sc:url "https://pypka.org/pKPDB" .
 
 <https://bio.tools/pksensi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0202,
         edam:topic_2269,
@@ -367974,8 +386479,30 @@ Pharmacokinetics is the study of drug absorption, distribution, metabolism, and
     sc:softwareHelp <https://cran.r-project.org/web/packages/pksensi/pksensi.pdf> ;
     sc:url "https://nanhung.rbind.io/pksensi/" .
 
+<https://bio.tools/pksps> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0121,
+        edam:topic_0128,
+        edam:topic_0154,
+        edam:topic_0601,
+        edam:topic_0749 ;
+    sc:citation <https://doi.org/10.1093/BIB/BBAB436>,
+        "pubmed:34661630" ;
+    sc:description "A novel method for predicting kinase of specific phosphorylation sites based on maximum weighted bipartite matching algorithm and phosphorylation sequence enrichment analysis." ;
+    sc:featureList edam:operation_0267,
+        edam:operation_0417,
+        edam:operation_2492 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "PKSPS" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/guoxinyunncu/PKSPS" .
+
 <https://bio.tools/pl-search> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
         edam:topic_0160 ;
@@ -367989,7 +386516,7 @@ Pharmacokinetics is the study of drug absorption, distribution, metabolism, and
     sc:url "http://bliulab.net/PL-search/" .
 
 <https://bio.tools/pla> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3053,
         edam:topic_3365,
@@ -368004,7 +386531,7 @@ Pharmacokinetics is the study of drug absorption, distribution, metabolism, and
     sc:url "http://bioinformatics.ust.hk/Software.html" .
 
 <https://bio.tools/plaac> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3474,
         edam:topic_3510 ;
@@ -368020,14 +386547,14 @@ Pharmacokinetics is the study of drug absorption, distribution, metabolism, and
 
 <https://bio.tools/plabipd> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0968" ;
-            sc:name "Keyword" ;
-            sc:sameAs "http://edamontology.org/data_0968" ] ;
+            sc:additionalType "http://edamontology.org/data_0968" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Keyword" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2080" ;
-            sc:name "Database search results" ;
-            sc:sameAs "http://edamontology.org/data_2080" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2080" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Database search results" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_3053 ;
     sc:citation <https://doi.org/10.1007/978-1-4939-3167-5_4> ;
@@ -368043,7 +386570,7 @@ Pharmacokinetics is the study of drug absorption, distribution, metabolism, and
     biotools:primaryContact "Björn Usadel" .
 
 <https://bio.tools/placentacellenrich> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2229,
         edam:topic_3170 ;
@@ -368058,7 +386585,7 @@ Single-cell RNA-Sequencing (scRNA-Seq) has improved our understanding of individ
     sc:url "https://placentacellenrich.gdcb.iastate.edu/" .
 
 <https://bio.tools/pladipus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0121 ;
     sc:citation <https://doi.org/10.1021/acs.jproteome.5b00850>,
@@ -368076,7 +386603,7 @@ Single-cell RNA-Sequencing (scRNA-Seq) has improved our understanding of individ
     biotools:primaryContact "Lennart Martens" .
 
 <https://bio.tools/plamom> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0780 ;
     sc:citation <https://doi.org/10.1093/NAR/GKAA538>,
         "pmcid:PMC7438957",
@@ -368086,7 +386613,7 @@ Single-cell RNA-Sequencing (scRNA-Seq) has improved our understanding of individ
     sc:url "http://119.81.164.251/plamom/" .
 
 <https://bio.tools/plan2l> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0218,
         edam:topic_0602,
@@ -368107,7 +386634,7 @@ Single-cell RNA-Sequencing (scRNA-Seq) has improved our understanding of individ
     biotools:primaryContact "M. Krallinger" .
 
 <https://bio.tools/plana> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Ontology",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0089,
@@ -368131,7 +386658,7 @@ Single-cell RNA-Sequencing (scRNA-Seq) has improved our understanding of individ
     sc:url "https://www.ebi.ac.uk/ols/ontologies/plana" .
 
 <https://bio.tools/plandbaffy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0632,
@@ -368153,7 +386680,7 @@ Single-cell RNA-Sequencing (scRNA-Seq) has improved our understanding of individ
     biotools:primaryContact "Jim Kent" .
 
 <https://bio.tools/planet-microbe> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_3172,
         edam:topic_3174,
@@ -368176,7 +386703,7 @@ The Planet Microbe cyberinfrastructure system for marine microbiology brings tog
     sc:url "https://www.planetmicrobe.org/" .
 
 <https://bio.tools/plangexq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0203,
         edam:topic_0621,
@@ -368192,7 +386719,7 @@ The Planet Microbe cyberinfrastructure system for marine microbiology brings tog
     sc:url "https://lobolab.umbc.edu/plangexq" .
 
 <https://bio.tools/planits> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0632,
         edam:topic_0654,
         edam:topic_0780,
@@ -368213,7 +386740,7 @@ The ITS, ITS1 and ITS2 reference dataset for subkingdom Viridiplantae.""" ;
     sc:url "https://github.com/apallavicini/PLANiTS" .
 
 <https://bio.tools/plannet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_3308,
@@ -368230,7 +386757,7 @@ The ITS, ITS1 and ITS2 reference dataset for subkingdom Viridiplantae.""" ;
     biotools:primaryContact "J F Abril" .
 
 <https://bio.tools/plannotate> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
@@ -368248,7 +386775,7 @@ The ITS, ITS1 and ITS2 reference dataset for subkingdom Viridiplantae.""" ;
     biotools:primaryContact <https://orcid.org/0000-0003-0888-7358> .
 
 <https://bio.tools/plant-3d> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0780,
         edam:topic_3474 ;
@@ -368265,7 +386792,7 @@ Plant 3D (P3D) automatically extracts common phenotyping features of interest fr
     sc:url "https://github.com/iziamtso/P3D/" .
 
 <https://bio.tools/plant-cytochrome-p450-db> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0780,
@@ -368285,7 +386812,7 @@ Plant 3D (P3D) automatically extracts common phenotyping features of interest fr
         "Jian Cheng" .
 
 <https://bio.tools/plant-disease-classification> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_0780,
@@ -368303,7 +386830,7 @@ Plant 3D (P3D) automatically extracts common phenotyping features of interest fr
     biotools:primaryContact "Manu BN" .
 
 <https://bio.tools/plant-disease-detection> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_0780,
@@ -368319,20 +386846,8 @@ Plant 3D (P3D) automatically extracts common phenotyping features of interest fr
     sc:url "https://www.mathworks.com/matlabcentral/fileexchange/62609-plant-disease-detection" ;
     biotools:primaryContact "jagabandhu mallik" .
 
-<https://bio.tools/plant-disease_relations> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0634,
-        edam:topic_0780,
-        edam:topic_3810 ;
-    sc:citation <https://doi.org/10.1371/JOURNAL.PONE.0221582>,
-        "pmcid:PMC6713337",
-        "pubmed:31461491" ;
-    sc:description "> LOW CONFIDENCE! | > CORRECT NAME OF TOOL COULD ALSO BE 'plant disease relations', 'corpus' | A corpus of plant-disease relations in the biomedical domain | Corpus of plnat-disease relation | The corpus of plant-disease relation annotated plants and diseases and their relation to PubMed abstract. We annotated NCBI Taxonomy ID and MEDIC ID for plant and disease mention respectively. We annotated 1,307 relations from 199 abstracts, where the numbers of annotated plants and diseases were 1,403 and 1,758, respectively | Download : BioC format, Brat visualization" ;
-    sc:featureList edam:operation_3280 ;
-    sc:name "plant-disease relations" ;
-    sc:url "http://gcancer.org/pdr/" .
-
 <https://bio.tools/plant-msubp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0140,
         edam:topic_0749,
@@ -368351,7 +386866,7 @@ The subcellular localization of proteins is very important for characterizing it
     sc:url "http://bioinfo.usu.edu/Plant-mSubP/" .
 
 <https://bio.tools/plant-rlk-rlp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0084,
@@ -368370,8 +386885,28 @@ The subcellular localization of proteins is very important for characterizing it
     sc:name "plant-rlk-rlp" ;
     sc:url "https://github.com/drestmont/plant_rlk_rlp/" .
 
+<https://bio.tools/plant_er_uprome> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0108,
+        edam:topic_0203,
+        edam:topic_0602,
+        edam:topic_0780,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.1002/PLD3.431>,
+        "pmcid:PMC9300056",
+        "pubmed:35875835" ;
+    sc:description "A repository and pathway browser for genes involved in signaling networks linked to the endoplasmic reticulum." ;
+    sc:featureList edam:operation_3435 ;
+    sc:isAccessibleForFree true ;
+    sc:name "Plant ER UPRome" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://uprome.tamu.edu" .
+
 <https://bio.tools/plant_physiospace> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0780,
         edam:topic_3170,
@@ -368387,7 +386922,7 @@ The subcellular localization of proteins is very important for characterizing it
     sc:url "http://physiospace.shinyapps.io/plant/" .
 
 <https://bio.tools/plant_ptm_viewer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:author "Alison Horne",
         "Thomas Van Parys" ;
@@ -368404,7 +386939,7 @@ The subcellular localization of proteins is very important for characterizing it
     biotools:primaryContact "Patrick Willems" .
 
 <https://bio.tools/plantannot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0091,
@@ -368424,18 +386959,21 @@ The subcellular localization of proteins is very important for characterizing it
 
 <https://bio.tools/plantcare> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3494" ;
-            sc:name "DNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3494" ] ;
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:name "DNA sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2070" ;
-            sc:name "Sequence motif (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_2070" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2070" ;
+            sc:name "Sequence motif (nucleic acid)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0780,
         edam:topic_3308 ;
-    sc:citation <https://doi.org/10.1093/nar/27.1.295> ;
+    sc:citation <https://doi.org/10.1093/nar/27.1.295>,
+        <https://doi.org/10.1093/nar/30.1.325>,
+        "pmcid:PMC148162",
+        "pmcid:PMC99092",
+        "pubmed:11752327",
+        "pubmed:9847207" ;
     sc:description "Database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences." ;
     sc:featureList edam:operation_0438 ;
     sc:name "PlantCARE" ;
@@ -368447,7 +386985,7 @@ The subcellular localization of proteins is very important for characterizing it
     sc:url "http://bioinformatics.psb.ugent.be/webtools/plantcare/html/" .
 
 <https://bio.tools/plantcv_v2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0780,
@@ -368468,7 +387006,7 @@ The subcellular localization of proteins is very important for characterizing it
         "Noah Fahlgren" .
 
 <https://bio.tools/plantdeepsea> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0780,
         edam:topic_3168,
@@ -368491,7 +387029,7 @@ The subcellular localization of proteins is very important for characterizing it
     biotools:primaryContact <https://orcid.org/0000-0002-2768-3572> .
 
 <https://bio.tools/plantgsea> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0621,
@@ -368512,7 +387050,7 @@ The subcellular localization of proteins is very important for characterizing it
     biotools:primaryContact "Support" .
 
 <https://bio.tools/plantloc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0160,
@@ -368528,7 +387066,7 @@ The subcellular localization of proteins is very important for characterizing it
     sc:url "http://cal.tongji.edu.cn/PlantLoc/" .
 
 <https://bio.tools/plantmetabolomics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0602,
@@ -368547,8 +387085,32 @@ The subcellular localization of proteins is very important for characterizing it
     sc:url "http://plantmetabolomics.vrac.iastate.edu/ver2/" ;
     biotools:primaryContact "Julie A. Dickerson" .
 
+<https://bio.tools/plantmwpidb> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0078,
+        edam:topic_0080,
+        edam:topic_0121,
+        edam:topic_0780,
+        edam:topic_3297 ;
+    sc:citation <https://doi.org/10.1038/S41598-022-11077-Z>,
+        "pmcid:PMC9076895",
+        "pubmed:35523906" ;
+    sc:description "A database for the molecular weight and isoelectric points of the plant proteomes." ;
+    sc:featureList edam:operation_0338,
+        edam:operation_0398,
+        edam:operation_0403,
+        edam:operation_0417,
+        edam:operation_2422 ;
+    sc:isAccessibleForFree true ;
+    sc:name "PlantMWpIDB" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://plantmwpidb.com/" .
+
 <https://bio.tools/plantnatsdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0634,
@@ -368570,7 +387132,7 @@ The subcellular localization of proteins is very important for characterizing it
     biotools:primaryContact "Dijun Chen" .
 
 <https://bio.tools/plantnexus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -368589,7 +387151,7 @@ The subcellular localization of proteins is very important for characterizing it
     biotools:primaryContact "Michael A. Held" .
 
 <https://bio.tools/plantpan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_0780,
@@ -368605,7 +387167,7 @@ The subcellular localization of proteins is very important for characterizing it
     sc:url "http://plantpan2.itps.ncku.edu.tw/" .
 
 <https://bio.tools/plantpepdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
         edam:topic_0219,
@@ -368621,8 +387183,29 @@ The subcellular localization of proteins is very important for characterizing it
     sc:name "PlantPepDB" ;
     sc:url "http://www.nipgr.ac.in/PlantPepDB/" .
 
+<https://bio.tools/plantphonedb> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1026" ;
+            sc:name "Gene symbol" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0602,
+        edam:topic_0780,
+        edam:topic_3170,
+        edam:topic_3308 ;
+    sc:citation <https://doi.org/10.1111/PBI.13893>,
+        "pubmed:35842742" ;
+    sc:description "A manually curated pan-plant database of ligand-receptor pairs infers cell-cell communication." ;
+    sc:featureList edam:operation_2421 ;
+    sc:isAccessibleForFree true ;
+    sc:name "PlantPhoneDB" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://jasonxu.shinyapps.io/PlantPhoneDB/" .
+
 <https://bio.tools/plantphos> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0601,
@@ -368639,7 +387222,7 @@ The subcellular localization of proteins is very important for characterizing it
     sc:url "http://csb.cse.yzu.edu.tw/PlantPhos/" .
 
 <https://bio.tools/plantpis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0623,
         edam:topic_0780 ;
@@ -368655,7 +387238,7 @@ The subcellular localization of proteins is very important for characterizing it
     sc:url "http://plantpis.ba.itb.cnr.it/" .
 
 <https://bio.tools/plantr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0637,
@@ -368674,7 +387257,7 @@ The subcellular localization of proteins is very important for characterizing it
     biotools:primaryContact "Renato A. F. de Lima" .
 
 <https://bio.tools/plantrep> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0157,
         edam:topic_0780,
@@ -368694,7 +387277,7 @@ The subcellular localization of proteins is very important for characterizing it
     biotools:primaryContact <https://orcid.org/0000-0001-6547-6243> .
 
 <https://bio.tools/plantrgs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0780,
@@ -368712,14 +387295,13 @@ The subcellular localization of proteins is very important for characterizing it
 
 <https://bio.tools/plantsdb> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0968" ;
-            sc:name "Keyword" ;
-            sc:sameAs "http://edamontology.org/data_0968" ] ;
+            sc:additionalType "http://edamontology.org/data_0968" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Keyword" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2080" ;
-            sc:name "Database search results" ;
-            sc:sameAs "http://edamontology.org/data_2080" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2080" ;
+            sc:name "Database search results" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_3053 ;
     sc:citation <https://doi.org/10.1093/nar/gks1153> ;
@@ -368736,7 +387318,7 @@ The subcellular localization of proteins is very important for characterizing it
         "Klaus Mayer" .
 
 <https://bio.tools/plantseg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0611,
         edam:topic_0780,
         edam:topic_3383,
@@ -368754,7 +387336,7 @@ PlantSeg is a tool for cell instance aware segmentation in densely packed 3D vol
     sc:url "https://github.com/hci-unihd/plant-seg" .
 
 <https://bio.tools/planttfcat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0780,
@@ -368773,7 +387355,7 @@ PlantSeg is a tool for cell instance aware segmentation in densely packed 3D vol
     biotools:primaryContact "Support" .
 
 <https://bio.tools/planttfdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0623,
@@ -368798,7 +387380,7 @@ PlantSeg is a tool for cell instance aware segmentation in densely packed 3D vol
     biotools:primaryContact "PlnTFDB Support" .
 
 <https://bio.tools/plappisite> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0154,
         edam:topic_0780,
@@ -368816,8 +387398,30 @@ PlantSeg is a tool for cell instance aware segmentation in densely packed 3D vol
     sc:name "PlaPPISite" ;
     sc:url "http://zzdlab.com/plappisite/index.php" .
 
+<https://bio.tools/plaqview> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0605,
+        edam:topic_2229,
+        edam:topic_3170,
+        edam:topic_3335,
+        edam:topic_3407 ;
+    sc:citation <https://doi.org/10.3389/FCVM.2022.969421>,
+        "pmcid:PMC9393487",
+        "pubmed:36003902" ;
+    sc:description "A comprehensive web portal for cardiovascular single-cell genomics." ;
+    sc:featureList edam:operation_0224,
+        edam:operation_3431 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Apache-2.0" ;
+    sc:name "PlaqView" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://www.plaqview.com" .
+
 <https://bio.tools/plasforest> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0769,
         edam:topic_0798 ;
@@ -368833,7 +387437,7 @@ A random forest classifier of contigs to identify contigs of plasmid origin in c
     sc:url "https://github.com/leaemiliepradier/PlasForest" .
 
 <https://bio.tools/plasgun> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0798,
         edam:topic_3174,
         edam:topic_3474 ;
@@ -368849,7 +387453,7 @@ A random forest classifier of contigs to identify contigs of plasmid origin in c
     sc:url "https://github.com/zhenchengfang/PlasGUN/" .
 
 <https://bio.tools/plasmapper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0654,
@@ -368868,13 +387472,8 @@ A random forest classifier of contigs to identify contigs of plasmid origin in c
     sc:url "http://wishart.biology.ualberta.ca/PlasMapper/index.html" ;
     biotools:primaryContact "Contact form" .
 
-<https://bio.tools/plasmid_dna_sequencing> a sc:SoftwareApplication ;
-    sc:description "CD Genomics provides complete plasmid DNA sequencing service, and our improved bioinformatics pipelines are available to perform de novo assembly with no reference required. CD Genomics’s plasmid sequencing service utilizes the power of Illumina Platform for plasmid verification, and has developed a low-cost high-throughput approach for complete larger plasmid sequencing using PacBio SMRT technology. We are pleased to use our extensive experience and advanced platform to offer the best service and the most qualified products to satisfy each demand from our customers." ;
-    sc:name "Plasmid DNA Sequencing" ;
-    sc:url "https://www.cd-genomics.com/complete-plasmid-dna-sequencing.html" .
-
 <https://bio.tools/plasmidhawk> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3474,
         edam:topic_3895 ;
@@ -368886,76 +387485,145 @@ A pan-genome based lab-of-origin prediction of engineered DNA.""" ;
     sc:name "PlasmidHawk" ;
     sc:url "https://gitlab.com/treangenlab/plasmidhawk.git" .
 
+<https://bio.tools/plasmidhostfinder> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0196,
+        edam:topic_3299,
+        edam:topic_3305,
+        edam:topic_3474,
+        edam:topic_3500 ;
+    sc:citation <https://doi.org/10.1101/2021.09.27.462084> ;
+    sc:description "Prediction of plasmid hosts using random forest." ;
+    sc:featureList edam:operation_0310,
+        edam:operation_0452,
+        edam:operation_3482 ;
+    sc:isAccessibleForFree true ;
+    sc:name "PlasmidHostFinder" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://cge.cbs.dtu.dk/services/PlasmidHostFinder/" .
+
+<https://bio.tools/plasmidid> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "DNA sequence" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1234" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence set (nucleic acid)" ] ;
+    bsc:output [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1383" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Nucleic acid sequence alignment" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2084" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Nucleic acid report" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2969" ;
+            sc:encodingFormat "http://edamontology.org/format_3603" ;
+            sc:name "Sequence image" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Workflow" ;
+    sc:applicationSubCategory edam:topic_0798,
+        edam:topic_3301 ;
+    sc:author <https://orcid.org/0000-0002-5881-7377> ;
+    sc:description "PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identification." ;
+    sc:featureList edam:operation_0291,
+        edam:operation_0524,
+        edam:operation_0578,
+        edam:operation_2429,
+        edam:operation_3184,
+        edam:operation_3472 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "PlasmidID" ;
+    sc:operatingSystem "Linux" ;
+    sc:softwareHelp <https://github.com/BU-ISCIII/plasmidID/wiki> ;
+    sc:softwareVersion "1.6.4",
+        "1.6.5",
+        "1.6.6" ;
+    sc:url "https://github.com/BU-ISCIII/plasmidID" ;
+    biotools:primaryContact <https://orcid.org/0000-0002-0740-6324> .
+
 <https://bio.tools/plasmidspades> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0622 ;
@@ -368974,7 +387642,7 @@ A pan-genome based lab-of-origin prediction of engineered DNA.""" ;
     biotools:primaryContact "Galaxy Support Team" .
 
 <https://bio.tools/plasmo_sync> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2229,
         edam:topic_2830 ;
@@ -368988,14 +387656,13 @@ A pan-genome based lab-of-origin prediction of engineered DNA.""" ;
 
 <https://bio.tools/plasmodb> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2295" ;
-            sc:name "Gene ID" ;
-            sc:sameAs "http://edamontology.org/data_2295" ] ;
+            sc:additionalType "http://edamontology.org/data_2295" ;
+            sc:name "Gene ID" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0916" ;
-            sc:name "Gene report" ;
-            sc:sameAs "http://edamontology.org/data_0916" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0916" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Gene report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0621 ;
     sc:citation <https://doi.org/10.1093/nar/gkn814> ;
@@ -369009,7 +387676,7 @@ A pan-genome based lab-of-origin prediction of engineered DNA.""" ;
     sc:url "http://plasmodb.org/plasmo/" .
 
 <https://bio.tools/plasmodium_autocount> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2815,
         edam:topic_3324 ;
@@ -369024,7 +387691,7 @@ A pan-genome based lab-of-origin prediction of engineered DNA.""" ;
     sc:url "http://www.vicbioinformatics.com/software.autocount.shtml" .
 
 <https://bio.tools/plasmostr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0625,
         edam:topic_2885,
@@ -369042,7 +387709,7 @@ A pan-genome based lab-of-origin prediction of engineered DNA.""" ;
     biotools:primaryContact "Melanie Bahlo" .
 
 <https://bio.tools/plasso> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2259 ;
@@ -369058,18 +387725,18 @@ A pan-genome based lab-of-origin prediction of engineered DNA.""" ;
 
 <https://bio.tools/plast> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ],
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Sequence alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1186/1471-2105-10-329> ;
@@ -369088,7 +387755,7 @@ A pan-genome based lab-of-origin prediction of engineered DNA.""" ;
     biotools:primaryContact "Dominique Lavenier" .
 
 <https://bio.tools/plast-ncrna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0097,
@@ -369104,8 +387771,29 @@ A pan-genome based lab-of-origin prediction of engineered DNA.""" ;
     sc:url "http://plastrna.njit.edu" ;
     biotools:primaryContact "Satish Chikkagoudar" .
 
+<https://bio.tools/plasticdb> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0821,
+        edam:topic_3174,
+        edam:topic_3293,
+        edam:topic_3301,
+        edam:topic_3941 ;
+    sc:citation <https://doi.org/10.1093/DATABASE/BAAC008>,
+        "pubmed:35266524" ;
+    sc:description "A database of microorganisms and proteins linked to plastic biodegradation." ;
+    sc:featureList edam:operation_2421,
+        edam:operation_2422,
+        edam:operation_3461 ;
+    sc:isAccessibleForFree true ;
+    sc:name "PlasticDB" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://plasticdb.org" .
+
 <https://bio.tools/plastid> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0622,
@@ -369124,7 +387812,7 @@ A pan-genome based lab-of-origin prediction of engineered DNA.""" ;
     biotools:primaryContact "Support" .
 
 <https://bio.tools/plastrans> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0203,
         edam:topic_3474 ;
@@ -369142,7 +387830,7 @@ PlasTrans is designed to distinguish the transmissible plasmid-derived sequences
     sc:url "https://github.com/zhenchengfang/PlasTrans" .
 
 <https://bio.tools/plata> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0203,
@@ -369158,7 +387846,7 @@ PlasTrans is designed to distinguish the transmissible plasmid-derived sequences
     sc:url "http://sandberg.cmb.ki.se/plata/" .
 
 <https://bio.tools/platanus_b> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0194,
         edam:topic_0196,
         edam:topic_3305,
@@ -369181,22 +387869,22 @@ Platanus_B is a de novo assembler for isolated bacterial genomes. The features o
 
 <https://bio.tools/platecore> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3108" ;
-            sc:name "Experimental measurement" ;
-            sc:sameAs "http://edamontology.org/data_3108" ] ;
+            sc:additionalType "http://edamontology.org/data_3108" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "Experimental measurement" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1772" ;
-            sc:name "Score" ;
-            sc:sameAs "http://edamontology.org/data_1772" ],
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Plot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ],
+            sc:additionalType "http://edamontology.org/data_1772" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Score" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2082" ;
-            sc:name "Matrix" ;
-            sc:sameAs "http://edamontology.org/data_2082" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2082" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Matrix" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -369219,7 +387907,7 @@ Platanus_B is a de novo assembler for isolated bacterial genomes. The features o
     biotools:primaryContact "Errol Strain" .
 
 <https://bio.tools/plateeditor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0632,
@@ -369242,8 +387930,29 @@ Platanus_B is a de novo assembler for isolated bacterial genomes. The features o
     sc:url "https://plateeditor.sourceforge.io/" ;
     biotools:primaryContact <https://orcid.org/0000-0001-5235-7069> .
 
+<https://bio.tools/plateflo> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0121,
+        edam:topic_2229,
+        edam:topic_3306,
+        edam:topic_3520 ;
+    sc:citation <https://doi.org/10.1016/J.OHX.2021.E00222>,
+        "pmcid:PMC9123465",
+        "pubmed:35607664" ;
+    sc:description "A software-controllable plate-scale perfusion system for culture of adherent cells." ;
+    sc:featureList edam:operation_3431,
+        edam:operation_3968 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "PlateFlo" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://plateflo.readthedocs.io" .
+
 <https://bio.tools/platelet-aggregate-morphology> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -369261,7 +387970,7 @@ Platanus_B is a de novo assembler for isolated bacterial genomes. The features o
     biotools:primaryContact "Thomas Colace" .
 
 <https://bio.tools/platinumcnv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2885,
         edam:topic_3053,
@@ -369275,7 +387984,7 @@ Platanus_B is a de novo assembler for isolated bacterial genomes. The features o
     sc:url "http://kumasakanatsuhiko.jp/projects/platinumcnv/" .
 
 <https://bio.tools/plato> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3053,
@@ -369292,7 +388001,7 @@ Platanus_B is a de novo assembler for isolated bacterial genomes. The features o
     sc:url "http://ritchielab.psu.edu/software/plato-download" .
 
 <https://bio.tools/plato-ssl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
         edam:topic_2640,
@@ -369315,7 +388024,7 @@ PLATO is a semi-supervised learning approach for somatic variant calling and pep
     sc:url "http://github.com/esherafat/PLATO" .
 
 <https://bio.tools/plato_plugin_for_autocomplete_on_ontologies> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_3071 ;
@@ -369331,8 +388040,36 @@ PLATO is a semi-supervised learning approach for somatic variant calling and pep
     sc:url "http://wwwdev.ebi.ac.uk/fgpt/PLATOdemo/" ;
     biotools:primaryContact "Simon Jupp" .
 
+<https://bio.tools/plato_small_molecules> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2301" ;
+            sc:name "SMILES string" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1463" ;
+            sc:name "Small molecule structure" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0621,
+        edam:topic_2275,
+        edam:topic_3047,
+        edam:topic_3336 ;
+    sc:citation <https://doi.org/10.3390/IJMS23095245>,
+        "pmcid:PMC9103655",
+        "pubmed:35563636" ;
+    sc:description "A Predictive Drug Discovery Web Platform for Efficient Target Fishing and Bioactivity Profiling of Small Molecules." ;
+    sc:featureList edam:operation_0224,
+        edam:operation_2489,
+        edam:operation_3938 ;
+    sc:isAccessibleForFree true ;
+    sc:name "PLATO" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://plato.uniba.it/" .
+
 <https://bio.tools/platoloco> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
         edam:topic_0157,
@@ -369350,7 +388087,7 @@ PLATO is a semi-supervised learning approach for somatic variant calling and pep
     sc:url "http://platoloco.aei.polsl.pl/" .
 
 <https://bio.tools/platypus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199 ;
     sc:citation <https://doi.org/10.1038/ng.3036> ;
@@ -369365,7 +388102,7 @@ PLATO is a semi-supervised learning approach for somatic variant calling and pep
     sc:url "http://www.well.ox.ac.uk/platypus" .
 
 <https://bio.tools/platypus-lymphocyte> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0804,
         edam:topic_3170,
         edam:topic_3308,
@@ -369381,16 +388118,32 @@ R package for the analysis of single-cell immune repertoires. Platypus contains
     sc:name "Platypus" ;
     sc:url "http://github.com/alexyermanos/Platypus" .
 
+<https://bio.tools/plavimop_database> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_3068,
+        edam:topic_3071 ;
+    sc:citation <https://doi.org/10.3758/S13428-022-01850-3>,
+        "pubmed:35441360" ;
+    sc:description "A new continuously assessed and collaborative 3D point-light display dataset." ;
+    sc:featureList edam:operation_2421,
+        edam:operation_2422 ;
+    sc:isAccessibleForFree true ;
+    sc:name "PLAViMoP database" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://plavimop.prd.fr/en/motions" .
+
 <https://bio.tools/plaza_dicots> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0842" ;
-            sc:name "Identifier" ;
-            sc:sameAs "http://edamontology.org/data_0842" ] ;
+            sc:additionalType "http://edamontology.org/data_0842" ;
+            sc:name "Identifier" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0872" ;
-            sc:name "Phylogenetic tree" ;
-            sc:sameAs "http://edamontology.org/data_0872" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0872" ;
+            sc:name "Phylogenetic tree" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0797 ;
     sc:citation <https://doi.org/10.1093/nar/gku986> ;
@@ -369408,14 +388161,12 @@ R package for the analysis of single-cell immune repertoires. Platypus contains
 
 <https://bio.tools/plaza_monocots> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0842" ;
-            sc:name "Identifier" ;
-            sc:sameAs "http://edamontology.org/data_0842" ] ;
+            sc:additionalType "http://edamontology.org/data_0842" ;
+            sc:name "Identifier" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0872" ;
-            sc:name "Phylogenetic tree" ;
-            sc:sameAs "http://edamontology.org/data_0872" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0872" ;
+            sc:name "Phylogenetic tree" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0797 ;
     sc:citation <https://doi.org/10.1093/nar/gku986> ;
@@ -369431,8 +388182,43 @@ R package for the analysis of single-cell immune repertoires. Platypus contains
     sc:url "http://bioinformatics.psb.ugent.be/plaza/versions/plaza_v3_monocots/" ;
     biotools:primaryContact "Klaas" .
 
+<https://bio.tools/plcojs> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0625,
+        edam:topic_2640,
+        edam:topic_3305,
+        edam:topic_3517 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC531>,
+        "pubmed:35900159" ;
+    sc:description "FAIR GWAS web SDK for the NCI Prostate, Lung, Colorectal, and Ovarian Cancer Genetic Atlas Project." ;
+    sc:featureList edam:operation_0337 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "PLCOjs" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://episphere.github.io/plco/docs/>,
+        <https://www.youtube.com/watch?v=87dXT9YtbfY&ab_channel=JonasAlmeida> ;
+    sc:url "https://episphere.github.io/plco" .
+
+<https://bio.tools/pldbench> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:description "Benchmarking of docking software on peptide-ligand complexes" ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "pldbench" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/pldbench/> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/pldbench/" .
+
 <https://bio.tools/plecdom> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0736,
         edam:topic_0780,
@@ -369450,7 +388236,7 @@ R package for the analysis of single-cell immune repertoires. Platypus contains
     biotools:primaryContact "Support" .
 
 <https://bio.tools/pleio> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0203,
         edam:topic_0625,
@@ -369467,7 +388253,7 @@ Pleiotropic Locus Exploration and Interpretation using Optimal test.""" ;
     sc:url "https://github.com/hanlab-SNU/PLEIO" .
 
 <https://bio.tools/pleiotropic_variability_score> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_2885,
@@ -369486,7 +388272,7 @@ Pleiotropic Locus Exploration and Interpretation using Optimal test.""" ;
     sc:url "https://bitbucket.org/dudleylab/pvs" .
 
 <https://bio.tools/plek> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0659,
@@ -369507,7 +388293,7 @@ Pleiotropic Locus Exploration and Interpretation using Optimal test.""" ;
     biotools:primaryContact "Junying Zhan" .
 
 <https://bio.tools/plethy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2815,
@@ -369528,7 +388314,7 @@ Pleiotropic Locus Exploration and Interpretation using Optimal test.""" ;
     biotools:primaryContact "Daniel Bottomly" .
 
 <https://bio.tools/plexdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0621,
@@ -369555,14 +388341,14 @@ Pleiotropic Locus Exploration and Interpretation using Optimal test.""" ;
 
 <https://bio.tools/plexy> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0850" ;
-            sc:name "Sequence set" ;
-            sc:sameAs "http://edamontology.org/data_0850" ] ;
+            sc:additionalType "http://edamontology.org/data_0850" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence set" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0880" ;
-            sc:name "RNA secondary structure" ;
-            sc:sameAs "http://edamontology.org/data_0880" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0880" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "RNA secondary structure" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0082 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btq642> ;
@@ -369572,8 +388358,31 @@ Pleiotropic Locus Exploration and Interpretation using Optimal test.""" ;
     sc:softwareHelp <http://www.bioinf.uni-leipzig.de/Software/PLEXY/> ;
     sc:url "http://www.bioinf.uni-leipzig.de/Software/PLEXY/" .
 
+<https://bio.tools/plf_svm> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:name "Protein sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0601,
+        edam:topic_3295,
+        edam:topic_3315,
+        edam:topic_3500 ;
+    sc:citation <https://doi.org/10.1016/J.BIOCHI.2021.10.001>,
+        "pubmed:34627982" ;
+    sc:description "Prediction of lysine formylation sites using support vector machine based on the sample selection from majority classes and synthetic minority over-sampling techniques." ;
+    sc:featureList edam:operation_0417,
+        edam:operation_2426,
+        edam:operation_3755 ;
+    sc:isAccessibleForFree true ;
+    sc:name "PLF_SVM" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://plf-svm.herokuapp.com/" .
+
 <https://bio.tools/plgem> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -369595,14 +388404,14 @@ Pleiotropic Locus Exploration and Interpretation using Optimal test.""" ;
 
 <https://bio.tools/plier> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3110" ;
-            sc:name "Raw microarray data" ;
-            sc:sameAs "http://edamontology.org/data_3110" ] ;
+            sc:additionalType "http://edamontology.org/data_3110" ;
+            sc:encodingFormat "http://edamontology.org/format_1637" ;
+            sc:name "Raw microarray data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3111" ;
-            sc:name "Processed microarray data" ;
-            sc:sameAs "http://edamontology.org/data_3111" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3111" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Processed microarray data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -369622,8 +388431,22 @@ Pleiotropic Locus Exploration and Interpretation using Optimal test.""" ;
     sc:url "http://bioconductor.org/packages/release/bioc/html/plier.html" ;
     biotools:primaryContact "Crispin Miller" .
 
+<https://bio.tools/plifepred> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:citation <https://doi.org/10.1371/journal.pone.0196829> ;
+    sc:description "Design half life of peptides in blood" ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "plifepred" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/plifepred/index.php> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/plifepred/index.php" .
+
 <https://bio.tools/plink> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3517 ;
     sc:citation <https://doi.org/10.1086/519795> ;
@@ -369637,7 +388460,7 @@ Pleiotropic Locus Exploration and Interpretation using Optimal test.""" ;
     sc:url "http://zzz.bwh.harvard.edu/plink/" .
 
 <https://bio.tools/plink-seq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3055,
         edam:topic_3056,
@@ -369653,7 +388476,7 @@ Pleiotropic Locus Exploration and Interpretation using Optimal test.""" ;
     sc:url "https://atgu.mgh.harvard.edu/plinkseq/" .
 
 <https://bio.tools/plink-ss> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0121,
@@ -369670,14 +388493,13 @@ Pleiotropic Locus Exploration and Interpretation using Optimal test.""" ;
 
 <https://bio.tools/plip> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1127" ;
-            sc:name "PDB ID" ;
-            sc:sameAs "http://edamontology.org/data_1127" ] ;
+            sc:additionalType "http://edamontology.org/data_1127" ;
+            sc:name "PDB ID" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1566" ;
-            sc:name "Protein-ligand interaction report" ;
-            sc:sameAs "http://edamontology.org/data_1566" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1566" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Protein-ligand interaction report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library",
         "Web application" ;
@@ -369696,7 +388518,7 @@ Pleiotropic Locus Exploration and Interpretation using Optimal test.""" ;
     sc:url "https://plip-tool.biotec.tu-dresden.de/" .
 
 <https://bio.tools/plmaddon> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2259,
         edam:topic_3315,
@@ -369714,7 +388536,7 @@ PLMaddon expands SBToolbox with a set of functions for the analysis of power-law
     biotools:primaryContact "Julio Vera-Gonzalez" .
 
 <https://bio.tools/plmla> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btt031> ;
@@ -369728,7 +388550,7 @@ PLMaddon expands SBToolbox with a set of functions for the analysis of power-law
     sc:url "http://bioinfo.ncu.edu.cn/inquiries_PLMLA.aspx" .
 
 <https://bio.tools/plncdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0659,
         edam:topic_0780,
@@ -369747,14 +388569,13 @@ PLncDB contains 1246372 lncRNAs and 13834 RNA-Seq datasets for 80 species.""" ;
 
 <https://bio.tools/plncpro> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3495" ;
-            sc:name "RNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3495" ] ;
+            sc:additionalType "http://edamontology.org/data_3495" ;
+            sc:encodingFormat "http://edamontology.org/format_2200" ;
+            sc:name "RNA sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2526" ;
-            sc:name "Text data" ;
-            sc:sameAs "http://edamontology.org/data_2526" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2526" ;
+            sc:name "Text data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099 ;
     sc:citation <https://doi.org/10.1093/nar/gkx866>,
@@ -369771,7 +388592,7 @@ PLncDB contains 1246372 lncRNAs and 13834 RNA-Seq datasets for 80 species.""" ;
     sc:url "https://github.com/urmi-21/PLncPRO" .
 
 <https://bio.tools/plncrna-hdeep> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0659,
         edam:topic_0780,
@@ -369789,7 +388610,7 @@ PLncDB contains 1246372 lncRNAs and 13834 RNA-Seq datasets for 80 species.""" ;
     sc:url "https://github.com/kangzhai/PlncRNA-HDeep" .
 
 <https://bio.tools/plnseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_3168,
@@ -369805,7 +388626,7 @@ PLncDB contains 1246372 lncRNAs and 13834 RNA-Seq datasets for 80 species.""" ;
     sc:url "http://homepage.fudan.edu.cn/zhangh/softwares/plnseq/" .
 
 <https://bio.tools/plntfdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -369827,7 +388648,7 @@ PLncDB contains 1246372 lncRNAs and 13834 RNA-Seq datasets for 80 species.""" ;
     biotools:primaryContact "PlnTFDB Support" .
 
 <https://bio.tools/ploidyinfer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0780,
@@ -369847,7 +388668,7 @@ PLncDB contains 1246372 lncRNAs and 13834 RNA-Seq datasets for 80 species.""" ;
         "Kang Huang" .
 
 <https://bio.tools/ploidyngs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0622,
@@ -369864,22 +388685,22 @@ PLncDB contains 1246372 lncRNAs and 13834 RNA-Seq datasets for 80 species.""" ;
 
 <https://bio.tools/plot> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1975" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2305" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Image" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_3308,
@@ -369898,7 +388719,7 @@ PLncDB contains 1246372 lncRNAs and 13834 RNA-Seq datasets for 80 species.""" ;
     biotools:primaryContact "Galaxy Support Team" .
 
 <https://bio.tools/plot2do> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3169,
         edam:topic_3176,
@@ -369918,7 +388739,7 @@ Micrococcal nuclease digestion followed by deep sequencing (MNase-seq) is the mo
     sc:url "https://github.com/rchereji/plot2DO" .
 
 <https://bio.tools/plot_plasmid> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0102 ;
     sc:description "pLOT is a plasmid mapping program for Windows-based PCs." ;
@@ -369931,18 +388752,15 @@ Micrococcal nuclease digestion followed by deep sequencing (MNase-seq) is the mo
 
 <https://bio.tools/plotcon> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0874" ;
-            sc:name "Comparison matrix" ;
-            sc:sameAs "http://edamontology.org/data_0874" ],
+            sc:additionalType "http://edamontology.org/data_0874" ;
+            sc:name "Comparison matrix" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:name "Sequence alignment" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2161" ;
-            sc:name "Sequence similarity plot" ;
-            sc:sameAs "http://edamontology.org/data_2161" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2161" ;
+            sc:name "Sequence similarity plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0097 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -369973,62 +388791,62 @@ Micrococcal nuclease digestion followed by deep sequencing (MNase-seq) is the mo
 
 <https://bio.tools/plotcoverage> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ],
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
+            sc:name "Sequence trace" ],
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-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2306" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_3002" ;
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-            sc:identifier "http://edamontology.org/data_0006" ;
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-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
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-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
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-            sc:identifier "http://edamontology.org/data_0006" ;
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-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
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-            sc:identifier "http://edamontology.org/data_0006" ;
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-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
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-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
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-            sc:name "Sequence trace" ;
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+            sc:additionalType "http://edamontology.org/data_3002" ;
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-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2305" ;
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-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
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-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
+            sc:name "Sequence trace" ],
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-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1975" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0797,
@@ -370045,7 +388863,7 @@ Micrococcal nuclease digestion followed by deep sequencing (MNase-seq) is the mo
     biotools:primaryContact "Galaxy Support Team" .
 
 <https://bio.tools/plotdna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0654 ;
@@ -370064,7 +388882,7 @@ Micrococcal nuclease digestion followed by deep sequencing (MNase-seq) is the mo
     biotools:primaryContact "Jesús P. Mena-Chalco" .
 
 <https://bio.tools/plotgardener> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0203,
@@ -370084,38 +388902,38 @@ Micrococcal nuclease digestion followed by deep sequencing (MNase-seq) is the mo
 
 <https://bio.tools/plotgenomecoverage> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2305" ;
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-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
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-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ],
+            sc:additionalType "http://edamontology.org/data_3002" ;
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-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
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-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0924" ;
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-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ],
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-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2306" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Image" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3168 ;
@@ -370133,7 +388951,7 @@ Micrococcal nuclease digestion followed by deep sequencing (MNase-seq) is the mo
     biotools:primaryContact "Galaxy Support Team" .
 
 <https://bio.tools/plotibd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3053 ;
     sc:citation <https://doi.org/10.1159/000334083>,
@@ -370148,7 +388966,7 @@ Micrococcal nuclease digestion followed by deep sequencing (MNase-seq) is the mo
     sc:url "http://faculty.washington.edu/wijsman/software.shtml" .
 
 <https://bio.tools/plotmi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3168,
@@ -370165,14 +388983,12 @@ Micrococcal nuclease digestion followed by deep sequencing (MNase-seq) is the mo
 
 <https://bio.tools/plotorf> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2887" ;
-            sc:name "Nucleic acid sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2887" ] ;
+            sc:additionalType "http://edamontology.org/data_2887" ;
+            sc:name "Nucleic acid sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1276" ;
-            sc:name "Nucleic acid features" ;
-            sc:sameAs "http://edamontology.org/data_1276" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1276" ;
+            sc:name "Nucleic acid features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0114 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -370202,7 +389018,7 @@ Micrococcal nuclease digestion followed by deep sequencing (MNase-seq) is the mo
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/plotorf.html" .
 
 <https://bio.tools/plotphytree> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3293,
         edam:topic_3374 ;
@@ -370220,7 +389036,7 @@ Micrococcal nuclease digestion followed by deep sequencing (MNase-seq) is the mo
     biotools:primaryContact "Bingley L" .
 
 <https://bio.tools/plotrep> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0157 ;
     sc:citation "pubmed:16845104" ;
@@ -370229,8 +389045,28 @@ Micrococcal nuclease digestion followed by deep sequencing (MNase-seq) is the mo
     sc:name "PlotRep" ;
     sc:url "http://repeats.abc.hu/cgi-bin/plotrep.pl" .
 
+<https://bio.tools/plotsr> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_0196,
+        edam:topic_2885 ;
+    sc:citation <https://doi.org/10.1093/bioinformatics/btac196>,
+        "pubmed:35426899" ;
+    sc:description "Plotsr generates high-quality visualisation of synteny and structural rearrangements between multiple genomes. For this, it uses the genomic structural annotations between multiple chromosome-level assemblies." ;
+    sc:featureList edam:operation_0525,
+        edam:operation_0570,
+        edam:operation_3208 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "plotsr" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/schneebergerlab/plotsr" .
+
 <https://bio.tools/plotxpress> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2229,
@@ -370248,7 +389084,7 @@ Micrococcal nuclease digestion followed by deep sequencing (MNase-seq) is the mo
     sc:url "https://huygens.science.uva.nl/PlotXpress/" .
 
 <https://bio.tools/plpe> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3168,
@@ -370267,7 +389103,7 @@ Micrococcal nuclease digestion followed by deep sequencing (MNase-seq) is the mo
     biotools:primaryContact "Soo-heang Eo" .
 
 <https://bio.tools/plrs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -370287,7 +389123,7 @@ Micrococcal nuclease digestion followed by deep sequencing (MNase-seq) is the mo
     biotools:primaryContact "Gwenael G.R. Leday to" .
 
 <https://bio.tools/plsd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0625,
         edam:topic_2640,
@@ -370303,8 +389139,76 @@ The aims of the Prospective Lynch Syndrome Database (PLSD) are to provide empiri
     sc:name "PLSD" ;
     sc:url "http://www.PLSD.eu" .
 
+<https://bio.tools/plsdb> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0769,
+        edam:topic_3174,
+        edam:topic_3277,
+        edam:topic_3697 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAB1111>,
+        "pmcid:PMC8728149",
+        "pubmed:34850116" ;
+    sc:description "Advancing a comprehensive database of bacterial plasmids." ;
+    sc:featureList edam:operation_2421,
+        edam:operation_2422,
+        edam:operation_3436 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "PLSDB" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://www.ccb.uni-saarland.de/plsdb" .
+
+<https://bio.tools/pltdb> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0659,
+        edam:topic_3170,
+        edam:topic_3512,
+        edam:topic_3518 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC278>,
+        "pubmed:35438150" ;
+    sc:description "A blood platelets-based gene expression database for disease investigation." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_0315,
+        edam:operation_0571 ;
+    sc:isAccessibleForFree true ;
+    sc:name "PltDB" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://www.pltdb-hust.com" .
+
+<https://bio.tools/pltrnadb> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_0968" ;
+            sc:name "Keyword" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0621,
+        edam:topic_0659,
+        edam:topic_0780,
+        edam:topic_2229,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.1371/JOURNAL.PONE.0268904>,
+        "pmcid:PMC9126412",
+        "pubmed:35605006" ;
+    sc:description "Plant transfer RNA database." ;
+    sc:featureList edam:operation_0464,
+        edam:operation_2421,
+        edam:operation_3216 ;
+    sc:isAccessibleForFree true ;
+    sc:name "PltRNAdb" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://www.nipgr.ac.in/PtRNAdb" .
+
 <https://bio.tools/pluma> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3301 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/bty198> ;
@@ -370318,7 +389222,7 @@ The aims of the Prospective Lynch Syndrome Database (PLSD) are to provide empiri
     biotools:primaryContact "Trevor Cickovski" .
 
 <https://bio.tools/plumed> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_1317 ;
     sc:citation <https://doi.org/10.1016/j.cpc.2009.05.011>,
@@ -370334,7 +389238,7 @@ The aims of the Prospective Lynch Syndrome Database (PLSD) are to provide empiri
     biotools:primaryContact "Carlo Camilloni" .
 
 <https://bio.tools/plumist> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3293,
         edam:topic_3474 ;
@@ -370349,7 +389253,7 @@ The aims of the Prospective Lynch Syndrome Database (PLSD) are to provide empiri
     sc:url "http://www.cibiv.at/software/plumist/" .
 
 <https://bio.tools/pluri-iq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0804,
         edam:topic_2229 ;
@@ -370366,7 +389270,7 @@ The aims of the Prospective Lynch Syndrome Database (PLSD) are to provide empiri
     sc:url "http://www.cnbc.pt/equipment/microscopyUnit.asp#divImageAnalysis" .
 
 <https://bio.tools/pluripred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_2229,
@@ -370383,8 +389287,54 @@ The aims of the Prospective Lynch Syndrome Database (PLSD) are to provide empiri
     sc:url "http://bicresources.jcbose.ac.in/ssaha4/pluripred/" ;
     biotools:primaryContact "Sudipto Saha" .
 
+<https://bio.tools/plutof> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_3707" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Biodiversity data" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Sequence features" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2887" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Nucleic acid sequence record" ] ;
+    bsc:output [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2337" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Resource metadata" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_3707" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Biodiversity data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workbench" ;
+    sc:applicationSubCategory edam:topic_0219,
+        edam:topic_3050,
+        edam:topic_3489 ;
+    sc:citation <https://doi.org/10.4137/EBO.S6271> ;
+    sc:description """PlutoF is an online data management platform and computing service provider for biology
+and related disciplines. Registered users can enter and manage a wide range of data, e.g.,
+taxon occurrences, metabarcoding data, taxon classifications, traits, and lab data. It
+features an annotation module where third-party annotations (on material source,
+geolocation and habitat, taxonomic identifications, interacting taxa, etc.) can be added to
+any collection specimen, living culture or DNA sequence record. It also features an analysis module by providing digital services for molecular sequence identification and species discovery from eDNA samples.""" ;
+    sc:featureList edam:operation_2403,
+        edam:operation_3431,
+        edam:operation_3778 ;
+    sc:isAccessibleForFree true ;
+    sc:name "PlutoF" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://plutof.docs.apiary.io/#>,
+        <https://plutof.ut.ee/#/manual>,
+        <https://plutof.ut.ee/#/videos> ;
+    sc:url "https://plutof.ut.ee" .
+
 <https://bio.tools/plw> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0632,
@@ -370405,7 +389355,7 @@ The aims of the Prospective Lynch Syndrome Database (PLSD) are to provide empiri
     biotools:primaryContact "Magnus Astrand" .
 
 <https://bio.tools/plyranges> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0622 ;
     sc:description "A dplyr-like interface for interacting with the common Bioconductor classes Ranges and GenomicRanges. By providing a grammatical and consistent way of manipulating these classes their accessiblity for new Bioconductor users is hopefully increased." ;
@@ -370422,7 +389372,7 @@ The aims of the Prospective Lynch Syndrome Database (PLSD) are to provide empiri
     biotools:primaryContact "Stuart Lee" .
 
 <https://bio.tools/pm2ra> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0634,
         edam:topic_3390,
@@ -370443,7 +389393,7 @@ PM2RA is a method that uses Hoteling’s T2 statistics to project multiple-dimen
     sc:url "http://www.pm2ra-xingyinliulab.cn/" .
 
 <https://bio.tools/pm4ngs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "PM4NGS is designed to generate a standard organizational structure for Next Generation Sequencing (NGS) data analysis. It includes a directory structure for the project, several Jupyter notebooks for data management and CWL workflows for pipeline execution." ;
     sc:isAccessibleForFree true ;
     sc:license "CC0-1.0" ;
@@ -370454,7 +389404,7 @@ PM2RA is a method that uses Hoteling’s T2 statistics to project multiple-dimen
     biotools:primaryContact <https://orcid.org/0000-0002-4108-5982> .
 
 <https://bio.tools/pma> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0128,
@@ -370474,14 +389424,13 @@ PM2RA is a method that uses Hoteling’s T2 statistics to project multiple-dimen
 
 <https://bio.tools/pmap-cutdb> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3021" ;
-            sc:name "UniProt accession" ;
-            sc:sameAs "http://edamontology.org/data_3021" ] ;
+            sc:additionalType "http://edamontology.org/data_3021" ;
+            sc:name "UniProt accession" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2093" ;
-            sc:name "Data reference" ;
-            sc:sameAs "http://edamontology.org/data_2093" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2093" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Data reference" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0602 ;
     sc:citation <https://doi.org/10.1093/nar/gkn683> ;
@@ -370492,7 +389441,7 @@ PM2RA is a method that uses Hoteling’s T2 statistics to project multiple-dimen
     sc:url "http://www.proteolysis.org/" .
 
 <https://bio.tools/pmat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_0769,
         edam:topic_3304,
@@ -370507,7 +389456,7 @@ PM2RA is a method that uses Hoteling’s T2 statistics to project multiple-dimen
     sc:url "https://github.com/djamesbarker/pMAT" .
 
 <https://bio.tools/pmb_matrix> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -370522,8 +389471,30 @@ PM2RA is a method that uses Hoteling’s T2 statistics to project multiple-dimen
     sc:softwareHelp <http://wwwlabs.uhnresearch.ca/tillier/software.htm#6> ;
     sc:url "http://www.uhnresearch.ca/labs/tillier/software.htm#4" .
 
+<https://bio.tools/pmce> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0602,
+        edam:topic_0749,
+        edam:topic_2640,
+        edam:topic_3173,
+        edam:topic_3299 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAB717>,
+        "pubmed:34647978" ;
+    sc:description "Efficient inference of expressive models of cancer evolution with high prognostic power." ;
+    sc:featureList edam:operation_0547,
+        edam:operation_2426,
+        edam:operation_3227 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Apache-2.0" ;
+    sc:name "PMCE" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/BIMIB-DISCo/PMCE" .
+
 <https://bio.tools/pmdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_2814 ;
@@ -370540,7 +389511,7 @@ PM2RA is a method that uses Hoteling’s T2 statistics to project multiple-dimen
     biotools:primaryContact "Tiziana Castrignanò" .
 
 <https://bio.tools/pmdscam> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0736,
         edam:topic_0780,
         edam:topic_3168,
@@ -370560,7 +389531,7 @@ Using NGS and Sanger sequencing, a 260-kbp Dscam genome draft from Black tiger s
     sc:url "http://pmdscam.dbbs.ncku.edu.tw/" .
 
 <https://bio.tools/pmfastr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0099 ;
@@ -370573,7 +389544,7 @@ Using NGS and Sanger sequencing, a 260-kbp Dscam genome draft from Black tiger s
     sc:url "http://genome.ucf.edu/PMFastR/" .
 
 <https://bio.tools/pmg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0176,
@@ -370589,8 +389560,28 @@ Using NGS and Sanger sequencing, a 260-kbp Dscam genome draft from Black tiger s
     sc:name "PMG" ;
     sc:url "http://bioserv.rpbs.jussieu.fr/~autin/cgi-bin/PMG" .
 
+<https://bio.tools/pmgs> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_3293,
+        edam:topic_3360,
+        edam:topic_3697 ;
+    sc:citation <https://doi.org/10.1093/BIB/BBAC328>,
+        "pubmed:36007229" ;
+    sc:description "Compositional alternative to phylogenetic grouping of microbiome data." ;
+    sc:featureList edam:operation_0323,
+        edam:operation_3436,
+        edam:operation_3935 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "PMGs" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/asliboyraz/PMGs" .
+
 <https://bio.tools/pmi-db> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Bioinformatics portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
@@ -370612,7 +389603,7 @@ Interactions between proteins and small molecule metabolites play a vital role i
     sc:url "http://easybioai.com/PMIDB" .
 
 <https://bio.tools/pmidcite> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3068,
         edam:topic_3314,
         edam:topic_3489 ;
@@ -370635,7 +389626,7 @@ Command-line users can immediately augment their PubMed search results using the
     sc:url "https://github.com/dvklopfenstein/pmidcite" .
 
 <https://bio.tools/pmig> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3305,
         edam:topic_3408,
@@ -370657,7 +389648,7 @@ Trans-Omics for Precision Medicine (TOPMed) Program.""" ;
     sc:url "https://github.com/InduKhatri/pmIG" .
 
 <https://bio.tools/pmirkb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0203,
@@ -370682,8 +389673,48 @@ Trans-Omics for Precision Medicine (TOPMed) Program.""" ;
         "Ming Chen",
         "Yijun Meng" .
 
+<https://bio.tools/pmirtarbase> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0204,
+        edam:topic_0659,
+        edam:topic_0749,
+        edam:topic_3068 ;
+    sc:citation <https://doi.org/10.1016/J.COMPBIOLCHEM.2022.107690>,
+        "pubmed:35567946" ;
+    sc:description "A positive miRNA-target regulations database." ;
+    sc:featureList edam:operation_0306,
+        edam:operation_0463,
+        edam:operation_3792 ;
+    sc:isAccessibleForFree true ;
+    sc:name "PmiRtarbase" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://www.lwb-lab.cn/PmiRtarbase" .
+
+<https://bio.tools/pmlb> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_2269,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAB727>,
+        "pmcid:PMC8756190",
+        "pubmed:34677586" ;
+    sc:description "Penn Machine Learning Benchmarks (PMLB) is a large collection of curated benchmark datasets for evaluating and comparing supervised machine learning algorithms." ;
+    sc:featureList edam:operation_3435,
+        edam:operation_3436,
+        edam:operation_3659 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "PMLB" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/EpistasisLab/pmlb" .
+
 <https://bio.tools/pmle> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2885,
         edam:topic_3053 ;
@@ -370697,7 +389728,7 @@ Trans-Omics for Precision Medicine (TOPMed) Program.""" ;
     sc:url "http://www.rannala.org/docs/pmle20.html" .
 
 <https://bio.tools/pmlipred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0632,
         edam:topic_0659,
         edam:topic_0780,
@@ -370713,7 +389744,7 @@ We have proposed a new method for fulfilling plant miRNA-lncRNA interaction pred
     sc:url "http://bis.zju.edu.cn/PmliPred/" .
 
 <https://bio.tools/pmm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0659,
@@ -370734,7 +389765,7 @@ We have proposed a new method for fulfilling plant miRNA-lncRNA interaction pred
     biotools:primaryContact "Anna Drewek" .
 
 <https://bio.tools/pmo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0637,
         edam:topic_3388,
@@ -370752,7 +389783,7 @@ The Precision Medicine Ontology (PMO) has been developed as a standardized ontol
     sc:url "http://www.phoc.org.cn/pmo/" .
 
 <https://bio.tools/pmp-project2017> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3302,
         edam:topic_3382,
@@ -370769,7 +389800,7 @@ The Precision Medicine Ontology (PMO) has been developed as a standardized ontol
     biotools:primaryContact "Margaret Duff" .
 
 <https://bio.tools/pmparser> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3068,
         edam:topic_3071,
         edam:topic_3303 ;
@@ -370784,7 +389815,7 @@ The tar file contains a compressed dump of PMDB, which was created in PostgreSQL
     sc:url "https://pmparser.hugheylab.org" .
 
 <https://bio.tools/pmrd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0659,
@@ -370806,7 +389837,7 @@ The tar file contains a compressed dump of PMDB, which was created in PostgreSQL
     biotools:primaryContact "Su Zhen Lab" .
 
 <https://bio.tools/pmsearch> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_0749 ;
@@ -370821,7 +389852,7 @@ The tar file contains a compressed dump of PMDB, which was created in PostgreSQL
     sc:url "http://mcube.nju.edu.cn/jwang/lab/soft/PMS/home.html" .
 
 <https://bio.tools/pmtr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_2830,
         edam:topic_3056,
@@ -370843,14 +389874,14 @@ For more information on how we obtained our results please refer to the document
 
 <https://bio.tools/pmut> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2974" ;
-            sc:name "Protein sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_2974" ] ;
+            sc:additionalType "http://edamontology.org/data_2974" ;
+            sc:encodingFormat "http://edamontology.org/format_2200" ;
+            sc:name "Protein sequence (raw)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Protein features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web API",
         "Web application" ;
@@ -370873,7 +389904,7 @@ For more information on how we obtained our results please refer to the document
     biotools:primaryContact <http://orcid.org/0000-0002-2035-7555> .
 
 <https://bio.tools/pmvae> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -370893,10 +389924,10 @@ pmVAE leverages biological prior information in the form of pathway gene sets to
 
 <https://bio.tools/pmx> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein structure" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_2275 ;
@@ -370911,7 +389942,7 @@ pmVAE leverages biological prior information in the form of pathway gene sets to
     sc:url "http://pmx.mpibpc.mpg.de/" .
 
 <https://bio.tools/pnab> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0097,
         edam:topic_0099,
@@ -370931,7 +389962,7 @@ The proto-Nucleic Acid Builder is a program for modeling the 3D strucutres of DN
     sc:url "https://github.com/GT-NucleicAcids/pnab" .
 
 <https://bio.tools/pnb-designer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0199,
@@ -370951,10 +389982,9 @@ The proto-Nucleic Acid Builder is a program for modeling the 3D strucutres of DN
 
 <https://bio.tools/pncshub> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0976" ;
-            sc:name "Identifier (by type of data)" ;
-            sc:sameAs "http://edamontology.org/data_0976" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0976" ;
+            sc:name "Identifier (by type of data)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
@@ -370972,7 +390002,7 @@ The proto-Nucleic Acid Builder is a program for modeling the 3D strucutres of DN
     sc:url "https://pncshub.erc.monash.edu/" .
 
 <https://bio.tools/pncstress> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0219,
         edam:topic_0659,
         edam:topic_0780,
@@ -370990,7 +390020,7 @@ The proto-Nucleic Acid Builder is a program for modeling the 3D strucutres of DN
     sc:url "http://bis.zju.edu.cn/pncstress" .
 
 <https://bio.tools/pnetcdf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3316 ;
     sc:citation <https://doi.org/10.1109/SC.2003.10053> ;
@@ -371006,8 +390036,32 @@ The proto-Nucleic Acid Builder is a program for modeling the 3D strucutres of DN
         <https://parallel-netcdf.github.io/wiki/QuickTutorial.html> ;
     sc:url "https://parallel-netcdf.github.io/" .
 
+<https://bio.tools/pngseqr> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0089,
+        edam:topic_0102,
+        edam:topic_0203,
+        edam:topic_2885,
+        edam:topic_3168 ;
+    sc:citation <https://doi.org/10.3390/PLANTS11141821>,
+        "pmcid:PMC9315718",
+        "pubmed:35890455" ;
+    sc:description "An R Package for Rapid Candidate Gene Selection through Pooled Next-Generation Sequencing." ;
+    sc:featureList edam:operation_0282,
+        edam:operation_0484,
+        edam:operation_3196,
+        edam:operation_3223 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "PNGSeqR" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/smilejeen/PNGseqR" .
+
 <https://bio.tools/pnidb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0108,
         edam:topic_0128,
@@ -371030,7 +390084,7 @@ As the chief actors within the cells, protein’s interaction with nucleic acid
     sc:url "http://server.malab.cn/PNIDB/index.html" .
 
 <https://bio.tools/pnns> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
@@ -371048,34 +390102,28 @@ As the chief actors within the cells, protein’s interaction with nucleic acid
 
 <https://bio.tools/pnu> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1868" ;
-            sc:name "Taxon" ;
-            sc:sameAs "http://edamontology.org/data_1868" ],
+            sc:additionalType "http://edamontology.org/data_1870" ;
+            sc:name "Genus name" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2732" ;
-            sc:name "Family name" ;
-            sc:sameAs "http://edamontology.org/data_2732" ],
+            sc:additionalType "http://edamontology.org/data_2912" ;
+            sc:name "Strain accession" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1872" ;
-            sc:name "Taxonomic classification" ;
-            sc:sameAs "http://edamontology.org/data_1872" ],
+            sc:additionalType "http://edamontology.org/data_1868" ;
+            sc:name "Taxon" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1870" ;
-            sc:name "Genus name" ;
-            sc:sameAs "http://edamontology.org/data_1870" ],
+            sc:additionalType "http://edamontology.org/data_1872" ;
+            sc:name "Taxonomic classification" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2912" ;
-            sc:name "Strain accession" ;
-            sc:sameAs "http://edamontology.org/data_2912" ],
+            sc:additionalType "http://edamontology.org/data_1045" ;
+            sc:name "Species name" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1045" ;
-            sc:name "Species name" ;
-            sc:sameAs "http://edamontology.org/data_1045" ] ;
+            sc:additionalType "http://edamontology.org/data_2732" ;
+            sc:name "Family name" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1872" ;
-            sc:name "Taxonomic classification" ;
-            sc:sameAs "http://edamontology.org/data_1872" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1872" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Taxonomic classification" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Database portal" ;
     sc:applicationSubCategory edam:topic_0637,
@@ -371094,7 +390142,7 @@ As the chief actors within the cells, protein’s interaction with nucleic acid
     sc:url "http://bacdive.dsmz.de/api/pnu/" .
 
 <https://bio.tools/pobo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0160,
@@ -371114,7 +390162,7 @@ As the chief actors within the cells, protein’s interaction with nucleic acid
     biotools:primaryContact "POBO Webmaster" .
 
 <https://bio.tools/pocketanalyzerpca> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_2275,
@@ -371128,7 +390176,7 @@ As the chief actors within the cells, protein’s interaction with nucleic acid
     sc:url "http://sourceforge.net/projects/papca/" .
 
 <https://bio.tools/pocketannotate> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0749,
@@ -371145,7 +390193,7 @@ As the chief actors within the cells, protein’s interaction with nucleic acid
     biotools:primaryContact "Nagasuma Chandra" .
 
 <https://bio.tools/pocketdepth> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2814,
         edam:topic_3534 ;
@@ -371161,7 +390209,7 @@ As the chief actors within the cells, protein’s interaction with nucleic acid
     sc:url "http://proline.physics.iisc.ernet.in/pocketdepth/" .
 
 <https://bio.tools/pocketome> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0602,
@@ -371183,7 +390231,7 @@ As the chief actors within the cells, protein’s interaction with nucleic acid
     biotools:primaryContact "Irina Kufareva" .
 
 <https://bio.tools/pocketquery> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0130,
@@ -371206,7 +390254,7 @@ As the chief actors within the cells, protein’s interaction with nucleic acid
     biotools:primaryContact "David Ryan Koes" .
 
 <https://bio.tools/pocketzebra> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0623,
@@ -371229,7 +390277,7 @@ As the chief actors within the cells, protein’s interaction with nucleic acid
     biotools:primaryContact "Dmitry Suplatov" .
 
 <https://bio.tools/poco> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0114,
         edam:topic_0203,
@@ -371251,22 +390299,22 @@ As the chief actors within the cells, protein’s interaction with nucleic acid
 
 <https://bio.tools/podkat> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2531" ;
-            sc:name "Experiment report" ;
-            sc:sameAs "http://edamontology.org/data_2531" ],
+            sc:additionalType "http://edamontology.org/data_2531" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Experiment report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1383" ;
-            sc:name "Sequence alignment (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1383" ] ;
+            sc:additionalType "http://edamontology.org/data_1383" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence alignment (nucleic acid)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1669" ;
-            sc:name "P-value" ;
-            sc:sameAs "http://edamontology.org/data_1669" ],
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Plot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1669" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "P-value" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0625,
@@ -371289,7 +390337,7 @@ As the chief actors within the cells, protein’s interaction with nucleic acid
     biotools:primaryContact "Ulrich Bodenhofer" .
 
 <https://bio.tools/poeas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0780 ;
@@ -371304,7 +390352,7 @@ As the chief actors within the cells, protein’s interaction with nucleic acid
     sc:url "http://caps.ncbs.res.in/poeas/" .
 
 <https://bio.tools/poemcoloc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_2269,
         edam:topic_2885,
@@ -371322,7 +390370,7 @@ Implements POEMColoc colocalization method described in King et al. 2020. This m
     sc:url "https://github.com/AbbVie-ComputationalGenomics/POEMColoc" .
 
 <https://bio.tools/poets> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2275,
         edam:topic_3524,
@@ -371341,7 +390389,7 @@ Implements POEMColoc colocalization method described in King et al. 2020. This m
     biotools:primaryContact "David M. Bassen" .
 
 <https://bio.tools/pogos> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0208 ;
@@ -371360,7 +390408,7 @@ Implements POEMColoc colocalization method described in King et al. 2020. This m
     biotools:primaryContact "VJ Carey" .
 
 <https://bio.tools/pointcloudxplore> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0203 ;
@@ -371376,7 +390424,7 @@ Implements POEMColoc colocalization method described in King et al. 2020. This m
     sc:url "http://bdtnp.lbl.gov/Fly-Net/bioimaging.jsp?w=pcx" .
 
 <https://bio.tools/poissonseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0797,
         edam:topic_2269,
@@ -371396,7 +390444,7 @@ Implements POEMColoc colocalization method described in King et al. 2020. This m
     biotools:primaryContact "Jun Li" .
 
 <https://bio.tools/poji> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_2229,
         edam:topic_3382 ;
@@ -371411,7 +390459,7 @@ To use the macro, download 'Poji.ijm' and install it in Fiji or ImageJ. You may
     sc:url "https://github.com/roherzog/Poji" .
 
 <https://bio.tools/pokemon> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0625,
@@ -371432,7 +390480,7 @@ To use the macro, download 'Poji.ijm' and install it in Fiji or ImageJ. You may
     sc:url "https://github.com/bushlab-genomics/POKEMON" .
 
 <https://bio.tools/poky> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0593,
         edam:topic_0769,
@@ -371447,8 +390495,31 @@ To use the macro, download 'Poji.ijm' and install it in Fiji or ImageJ. You may
     sc:url "https://poky.clas.ucdenver.edu" ;
     biotools:primaryContact "Woonghee Lee" .
 
+<https://bio.tools/pol3base> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0602,
+        edam:topic_0659,
+        edam:topic_3299,
+        edam:topic_3794 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAB1033>,
+        "pmcid:PMC8728242",
+        "pubmed:34747466" ;
+    sc:description "A resource for decoding the interactome, expression, evolution, epitranscriptome and disease variations of Pol III-transcribed ncRNAs." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_0443,
+        edam:operation_3901 ;
+    sc:isAccessibleForFree true ;
+    sc:name "Pol3Base" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://rna.sysu.edu.cn/pol3base/" .
+
 <https://bio.tools/pol3scan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0160 ;
     sc:citation "pmcid:PMC523650",
@@ -371465,7 +390536,7 @@ To use the macro, download 'Poji.ijm' and install it in Fiji or ImageJ. You may
     biotools:primaryContact "Prof. Riccardo Percudani" .
 
 <https://bio.tools/polar-gini-curve> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2229,
         edam:topic_3360 ;
@@ -371480,7 +390551,7 @@ In this work, we design the Polar Gini Curve (PGC) technique, which combines the
     sc:url "https://figshare.com/projects/Polar_Gini_Curve/76749" .
 
 <https://bio.tools/polarmask> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3520 ;
@@ -371491,8 +390562,30 @@ In this work, we design the Polar Gini Curve (PGC) technique, which combines the
     sc:name "PolarMask" ;
     sc:url "http://github.com/xieenze/PolarMask" .
 
+<https://bio.tools/polarmorphism> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0602,
+        edam:topic_0625,
+        edam:topic_2885,
+        edam:topic_3517 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC228>,
+        "pmcid:PMC9235478",
+        "pubmed:35758773" ;
+    sc:description "PolarMorphism enables discovery of shared genetic variants across multiple traits from GWAS summary statistics." ;
+    sc:featureList edam:operation_0484,
+        edam:operation_3196,
+        edam:operation_3791 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "PolarMorphism" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/UMCUGenetics/PolarMorphism" .
+
 <https://bio.tools/polarprotdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0140,
         edam:topic_0601,
         edam:topic_0621,
@@ -371509,10 +390602,10 @@ In this work, we design the Polar Gini Curve (PGC) technique, which combines the
 
 <https://bio.tools/polarprotpred> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0140,
@@ -371537,7 +390630,7 @@ In this work, we design the Polar Gini Curve (PGC) technique, which combines the
     sc:url "http://polarprotpred.ttk.hu" .
 
 <https://bio.tools/polbase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0654,
@@ -371558,7 +390651,7 @@ In this work, we design the Polar Gini Curve (PGC) technique, which combines the
     biotools:primaryContact "Polbase Support" .
 
 <https://bio.tools/polee> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3170,
         edam:topic_3512 ;
@@ -371574,7 +390667,7 @@ Polee is an alternative methodology for the analysis of RNA-Seq data. A lot of R
     sc:url "https://github.com/dcjones/polee" .
 
 <https://bio.tools/polishem> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0611,
         edam:topic_3452 ;
     sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAA218>,
@@ -371590,7 +390683,7 @@ Image enhancement in FIB-SEM (Focused Ion Beam Scanning Electron Microscopy)."""
     sc:url "http://www.cnb.csic.es/%7ejjfernandez/polishem" .
 
 <https://bio.tools/polnet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3408 ;
     sc:citation <https://doi.org/10.1016/j.bpj.2018.03.032>,
@@ -371607,7 +390700,7 @@ Image enhancement in FIB-SEM (Focused Ion Beam Scanning Electron Microscopy)."""
     biotools:primaryContact "Miguel O. Bernabeu" .
 
 <https://bio.tools/polobag> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
         edam:topic_0621 ;
@@ -371628,7 +390721,7 @@ Code : The Python file PoLoBag.py can be run in Python 3.x (for Python 2.x just
     sc:url "https://github.com/gourabghoshroy/PoLoBag" .
 
 <https://bio.tools/poly> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3053,
@@ -371643,7 +390736,7 @@ Code : The Python file PoLoBag.py can be run in Python 3.x (for Python 2.x just
     sc:url "http://csg.sph.umich.edu/chen/public/software/poly/" .
 
 <https://bio.tools/polya-dg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0160,
         edam:topic_3407,
@@ -371660,7 +390753,7 @@ Code : The Python file PoLoBag.py can be run in Python 3.x (for Python 2.x just
     sc:url "https://github.com/Szym29/PolyADG" .
 
 <https://bio.tools/polya-miner> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0659,
         edam:topic_2640,
@@ -371679,7 +390772,7 @@ More than half of human genes exercise alternative polyadenylation (APA) and gen
     sc:url "http://www.liuzlab.org/PolyA-miner/" .
 
 <https://bio.tools/polyadq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0659,
@@ -371695,7 +390788,7 @@ More than half of human genes exercise alternative polyadenylation (APA) and gen
     sc:url "http://cb.utdallas.edu/tools/polyadq/polyadq_form.html" .
 
 <https://bio.tools/polyamotif> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_3511 ;
@@ -371710,7 +390803,7 @@ More than half of human genes exercise alternative polyadenylation (APA) and gen
     sc:url "http://sfb.kaust.edu.sa/Pages/Software.aspx" .
 
 <https://bio.tools/polyapeak> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_3169 ;
@@ -371724,8 +390817,44 @@ More than half of human genes exercise alternative polyadenylation (APA) and gen
     sc:softwareHelp <http://web1.sph.emory.edu/users/hwu30/software/polyaPeak.pdf> ;
     sc:url "http://web1.sph.emory.edu/users/hwu30/software/polyaPeak.html" .
 
+<https://bio.tools/polyapred> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:citation "pubmed:19795571" ;
+    sc:description "PolyApred is a support vector machine (SVM) based method for the prediction of polyadenylation signal (PAS) in human DNA sequence." ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "polyapred" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/polyapred/index.html> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/polyapred/index.html" .
+
+<https://bio.tools/polyatailor> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0621,
+        edam:topic_0780,
+        edam:topic_3168,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.1093/BIB/BBAC271>,
+        "pubmed:35769001" ;
+    sc:description "A user-friendly R package for measuring poly(A) tail length from NGS-based short-read and PacBio-based long-read sequencing data." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_0428,
+        edam:operation_3192 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "PolyAtailor" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/BMILAB/PolyAtailor" .
+
 <https://bio.tools/polybayes> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
@@ -371743,7 +390872,7 @@ More than half of human genes exercise alternative polyadenylation (APA) and gen
     biotools:primaryContact "Gabor Marth" .
 
 <https://bio.tools/polyboost> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3474,
@@ -371760,7 +390889,7 @@ PolyBoost is a post-analysis tool for the batch processing output of PolyPhen-2
     sc:url "https://github.com/djparente/polyboost" .
 
 <https://bio.tools/polyclustr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2640 ;
     sc:citation <https://doi.org/10.1186/s12859-018-2204-4> ;
@@ -371780,18 +390909,15 @@ PolyBoost is a post-analysis tool for the batch processing output of PolyPhen-2
 
 <https://bio.tools/polydot> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0862" ;
-            sc:name "Dotplot" ;
-            sc:sameAs "http://edamontology.org/data_0862" ],
+            sc:additionalType "http://edamontology.org/data_0862" ;
+            sc:name "Dotplot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:name "Sequence features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -371821,7 +390947,7 @@ PolyBoost is a post-analysis tool for the batch processing output of PolyPhen-2
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/polydot.html" .
 
 <https://bio.tools/polydot_ws_husar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:description "Displays all-against-all dotplots of a set of sequences." ;
@@ -371832,7 +390958,7 @@ PolyBoost is a post-analysis tool for the batch processing output of PolyPhen-2
     sc:url "http://genius.embnet.dkfz-heidelberg.de/menu/hobit/embdoc/polydot.html" .
 
 <https://bio.tools/polyester> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -371853,7 +390979,7 @@ PolyBoost is a post-analysis tool for the batch processing output of PolyPhen-2
         "Jeff Leek" .
 
 <https://bio.tools/polyfit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0607,
@@ -371872,7 +390998,7 @@ PolyBoost is a post-analysis tool for the batch processing output of PolyPhen-2
     biotools:primaryContact "Conrad Burden" .
 
 <https://bio.tools/polyfold> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0130,
         edam:topic_0602,
@@ -371893,7 +391019,7 @@ PolyFold is an interactive visual simulator for distance-based protein folding.
     sc:url "https://github.com/Bhattacharya-Lab/PolyFold" .
 
 <https://bio.tools/polygene> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0199,
         edam:topic_0610,
@@ -371912,7 +391038,7 @@ This software uses the genotypic frequencies under double-reduction to estimate
     sc:url "https://github.com/huangkang1987/polygene" .
 
 <https://bio.tools/polygenicpathways> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0621,
@@ -371935,7 +391061,7 @@ This software uses the genotypic frequencies under double-reduction to estimate
     biotools:primaryContact "C.J. Carter" .
 
 <https://bio.tools/polyhap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3053 ;
     sc:citation <https://doi.org/10.1186/1471-2105-9-513> ;
@@ -371950,7 +391076,7 @@ This software uses the genotypic frequencies under double-reduction to estimate
     sc:url "http://www.imperial.ac.uk/people/l.coin" .
 
 <https://bio.tools/polymapr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0199,
@@ -371967,7 +391093,7 @@ This software uses the genotypic frequencies under double-reduction to estimate
     biotools:primaryContact "Peter Bourke" .
 
 <https://bio.tools/polymarker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0632,
@@ -371985,7 +391111,7 @@ This software uses the genotypic frequencies under double-reduction to estimate
     sc:url "http://polymarker.tgac.ac.uk/" .
 
 <https://bio.tools/polymirts> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0199,
@@ -372007,8 +391133,56 @@ This software uses the genotypic frequencies under double-reduction to estimate
     sc:url "http://compbio.uthsc.edu/miRSNP/" ;
     biotools:primaryContact "Dr. Yan Cui" .
 
+<https://bio.tools/polympact> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_0625,
+        edam:topic_0749,
+        edam:topic_3512,
+        edam:topic_3517 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAC024>,
+        "pmcid:PMC8860573",
+        "pubmed:35061909" ;
+    sc:description "Exploring functional relations among common human genetic variants." ;
+    sc:featureList edam:operation_0487,
+        edam:operation_3196,
+        edam:operation_3226,
+        edam:operation_3227 ;
+    sc:isAccessibleForFree true ;
+    sc:name "Polympact" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://bcglab.cibio.unitn.it/polympact" .
+
+<https://bio.tools/polyorigin> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_0160,
+        edam:topic_0625,
+        edam:topic_2885,
+        edam:topic_3518 ;
+    sc:citation <https://doi.org/10.1093/GENETICS/IYAB106>,
+        "pmcid:PMC8633103",
+        "pubmed:34849879" ;
+    sc:description "A package for haplotype reconstruction in connected polyploid F1 populations." ;
+    sc:featureList edam:operation_0484,
+        edam:operation_0487,
+        edam:operation_2944,
+        edam:operation_3196,
+        edam:operation_3454 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "PolyOrigin" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/chaozhi/PolyOrigin.jl" .
+
 <https://bio.tools/polyphen> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0199,
@@ -372025,7 +391199,7 @@ This software uses the genotypic frequencies under double-reduction to estimate
     sc:url "http://genetics.bwh.harvard.edu/pph2/" .
 
 <https://bio.tools/polyphen-2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0625,
@@ -372054,7 +391228,7 @@ This software uses the genotypic frequencies under double-reduction to estimate
     biotools:primaryContact "Ivan Adzhubey" .
 
 <https://bio.tools/polyphred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0199,
@@ -372077,7 +391251,7 @@ This software uses the genotypic frequencies under double-reduction to estimate
         "Phil Green" .
 
 <https://bio.tools/polyploid-genotyping> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2885,
@@ -372092,8 +391266,30 @@ This software uses the genotypic frequencies under double-reduction to estimate
     sc:url "https://github.com/pblischak/polyploid-genotyping" ;
     biotools:primaryContact "Paul D Blischak" .
 
+<https://bio.tools/polypolish> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_0157,
+        edam:topic_0196 ;
+    sc:citation <https://doi.org/10.1371/journal.pcbi.1009802>,
+        "pmcid:PMC8812927",
+        "pubmed:35073327" ;
+    sc:description "Polypolish is a tool for polishing genome assemblies with short reads. Unlike other tools in this category, Polypolish uses SAM files where each read has been aligned to all possible locations (not just a single best location). This allows it to repair errors in repeat regions that other alignment-based polishers cannot fix." ;
+    sc:featureList edam:operation_0523,
+        edam:operation_0525,
+        edam:operation_3195,
+        edam:operation_3198 ;
+    sc:name "Polypolish" ;
+    sc:softwareHelp <https://github.com/rrwick/Polypolish/wiki> ;
+    sc:url "https://github.com/rrwick/Polypolish" .
+
 <https://bio.tools/polyq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0157,
@@ -372116,7 +391312,7 @@ This software uses the genotypic frequencies under double-reduction to estimate
     biotools:primaryContact "Ashley M. Buckle" .
 
 <https://bio.tools/polyqtlr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0625,
@@ -372139,7 +391335,7 @@ This software uses the genotypic frequencies under double-reduction to estimate
     sc:url "http://cran.r-project.org/package=polyqtlR" .
 
 <https://bio.tools/polyquant> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3306,
         edam:topic_3344,
@@ -372157,7 +391353,7 @@ This software uses the genotypic frequencies under double-reduction to estimate
     biotools:primaryContact "Jonathan Mason" .
 
 <https://bio.tools/polyround> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3277,
         edam:topic_3407 ;
@@ -372170,8 +391366,25 @@ This software uses the genotypic frequencies under double-reduction to estimate
     sc:name "PolyRound" ;
     sc:url "https://gitlab.com/csb.ethz/PolyRound" .
 
+<https://bio.tools/polysacdb> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:citation <https://doi.org/10.1371/journal.pone.0034613>,
+        "pmcid:PMC3324500",
+        "pubmed:22509333" ;
+    sc:description """A comprehensive database of microbial polysaccharide antigens and their antibodies.
+PolysacDB database has been developed to facilitate easy retrieval of information pertaining to microbial surface polysaccharides.""" ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "polysacdb" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/polysacdb/index.html> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/polysacdb/index.html" .
+
 <https://bio.tools/polysearch> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0199,
@@ -372193,7 +391406,7 @@ This software uses the genotypic frequencies under double-reduction to estimate
     biotools:primaryContact "Contact form" .
 
 <https://bio.tools/polysearch2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0218,
         edam:topic_0634,
@@ -372214,7 +391427,7 @@ This software uses the genotypic frequencies under double-reduction to estimate
     biotools:primaryContact "Support" .
 
 <https://bio.tools/polyunphased> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3056,
         edam:topic_3293 ;
@@ -372232,7 +391445,7 @@ This software uses the genotypic frequencies under double-reduction to estimate
     biotools:primaryContact "Alexandre Bureau" .
 
 <https://bio.tools/polyview-2d> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_2814 ;
@@ -372249,7 +391462,7 @@ This software uses the genotypic frequencies under double-reduction to estimate
     sc:url "http://polyview.cchmc.org/" .
 
 <https://bio.tools/polyview-mm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0154,
@@ -372273,7 +391486,7 @@ This software uses the genotypic frequencies under double-reduction to estimate
     biotools:primaryContact "Contact form" .
 
 <https://bio.tools/pomashiny> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -372300,22 +391513,20 @@ This software uses the genotypic frequencies under double-reduction to estimate
 
 <https://bio.tools/pombase> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ],
+            sc:additionalType "http://edamontology.org/data_1276" ;
+            sc:encodingFormat "http://edamontology.org/format_3007" ;
+            sc:name "Nucleic acid features" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1276" ;
-            sc:name "Nucleic acid features" ;
-            sc:sameAs "http://edamontology.org/data_1276" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1383" ;
-            sc:name "Sequence alignment (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1383" ],
+            sc:additionalType "http://edamontology.org/data_0857" ;
+            sc:name "Sequence search results" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0857" ;
-            sc:name "Sequence search results" ;
-            sc:sameAs "http://edamontology.org/data_0857" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1383" ;
+            sc:name "Sequence alignment (nucleic acid)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_3070,
@@ -372339,10 +391550,10 @@ This software uses the genotypic frequencies under double-reduction to estimate
 
 <https://bio.tools/pombase_assembly_converter> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1276" ;
-            sc:name "Nucleic acid features" ;
-            sc:sameAs "http://edamontology.org/data_1276" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1276" ;
+            sc:encodingFormat "http://edamontology.org/format_3007" ;
+            sc:name "Nucleic acid features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102 ;
     sc:author "Ensembl team" ;
@@ -372362,18 +391573,18 @@ This software uses the genotypic frequencies under double-reduction to estimate
 
 <https://bio.tools/pombase_data_slicer> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2012" ;
-            sc:name "Sequence coordinates" ;
-            sc:sameAs "http://edamontology.org/data_2012" ],
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence variations" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2012" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence coordinates" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:author "Ensembl Genomes team" ;
@@ -372393,14 +391604,12 @@ This software uses the genotypic frequencies under double-reduction to estimate
 
 <https://bio.tools/pombase_motif_search> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1352" ;
-            sc:name "Regular expression" ;
-            sc:sameAs "http://edamontology.org/data_1352" ] ;
+            sc:additionalType "http://edamontology.org/data_1352" ;
+            sc:name "Regular expression" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0857" ;
-            sc:name "Sequence search results" ;
-            sc:sameAs "http://edamontology.org/data_0857" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0857" ;
+            sc:name "Sequence search results" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0160 ;
     sc:author "Kim Rutherford" ;
@@ -372421,14 +391630,14 @@ This software uses the genotypic frequencies under double-reduction to estimate
 
 <https://bio.tools/pombase_vep> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ] ;
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence variations" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2885 ;
     sc:author "Ensembl team" ;
@@ -372447,7 +391656,7 @@ This software uses the genotypic frequencies under double-reduction to estimate
     biotools:primaryContact "Ensembl Genomes webteam" .
 
 <https://bio.tools/pome> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0203,
@@ -372460,7 +391669,7 @@ This software uses the genotypic frequencies under double-reduction to estimate
     sc:url "http://www.stat.purdue.edu/~yuzhu/pome.html" .
 
 <https://bio.tools/pomegranate> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0621,
         edam:topic_2229,
@@ -372478,7 +391687,7 @@ See the Documentation folder for all user guides, tutorials and documentation. I
     sc:url "https://github.com/erodb/Pomegranate" .
 
 <https://bio.tools/pomelo_ii> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0203,
@@ -372500,7 +391709,7 @@ See the Documentation folder for all user guides, tutorials and documentation. I
     biotools:primaryContact "Ramon Diaz" .
 
 <https://bio.tools/pomo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0654,
@@ -372517,7 +391726,7 @@ See the Documentation folder for all user guides, tutorials and documentation. I
     sc:url "http://pomo.cs.tut.fi/" .
 
 <https://bio.tools/pompe> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0634,
@@ -372539,14 +391748,12 @@ The Pompe disease GAA variant database represents an effort to collect all known
 
 <https://bio.tools/pon-diso> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2886" ;
-            sc:name "Protein sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2886" ] ;
+            sc:additionalType "http://edamontology.org/data_2886" ;
+            sc:name "Protein sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:name "Protein features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1002/humu.22600> ;
@@ -372563,14 +391770,12 @@ The Pompe disease GAA variant database represents an effort to collect all known
 
 <https://bio.tools/pon-p2> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2886" ;
-            sc:name "Protein sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2886" ] ;
+            sc:additionalType "http://edamontology.org/data_2886" ;
+            sc:name "Protein sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:name "Protein features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1186/s12920-015-0125-x> ;
@@ -372586,7 +391791,7 @@ The Pompe disease GAA variant database represents an effort to collect all known
     sc:url "http://structure.bmc.lu.se/PON-P2/" .
 
 <https://bio.tools/pon-sol> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_2814,
@@ -372601,7 +391806,7 @@ The Pompe disease GAA variant database represents an effort to collect all known
     biotools:primaryContact "Mauno Vihinen" .
 
 <https://bio.tools/ponderosa-cs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_2275,
         edam:topic_2814 ;
@@ -372617,7 +391822,7 @@ The Pompe disease GAA variant database represents an effort to collect all known
     sc:url "http://ponderosa.nmrfam.wisc.edu/" .
 
 <https://bio.tools/pong> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3053,
         edam:topic_3056 ;
@@ -372633,7 +391838,7 @@ The Pompe disease GAA variant database represents an effort to collect all known
     sc:url "http://brown.edu/Research/Ramachandran_Lab/projects/" .
 
 <https://bio.tools/pongo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0736,
@@ -372654,7 +391859,7 @@ The Pompe disease GAA variant database represents an effort to collect all known
     biotools:primaryContact "Piero Fariselli" .
 
 <https://bio.tools/pool-hmm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3053,
         edam:topic_3168,
@@ -372670,7 +391875,7 @@ The Pompe disease GAA variant database represents an effort to collect all known
     sc:url "https://qgsp.jouy.inra.fr/index.php?option=com_content&view=article&id=56&Itemid=63" .
 
 <https://bio.tools/poolfstat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2885,
@@ -372689,7 +391894,7 @@ The Pompe disease GAA variant database represents an effort to collect all known
     sc:url "https://cran.r-project.org/web/packages/poolfstat/index.html" .
 
 <https://bio.tools/poolhap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3053 ;
@@ -372706,7 +391911,7 @@ The Pompe disease GAA variant database represents an effort to collect all known
     biotools:primaryContact "Quan Long" .
 
 <https://bio.tools/poolhap2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3053,
@@ -372723,7 +391928,7 @@ The Pompe disease GAA variant database represents an effort to collect all known
     sc:url "https://code.google.com/p/poolhap2/" .
 
 <https://bio.tools/pooling> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_0781,
@@ -372740,7 +391945,7 @@ The Pompe disease GAA variant database represents an effort to collect all known
     sc:url "http://alan.cs.gsu.edu/NGS/?q=content/pooling" .
 
 <https://bio.tools/poolne_estim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2885,
         edam:topic_3053,
@@ -372754,8 +391959,27 @@ The Pompe disease GAA variant database represents an effort to collect all known
     sc:softwareHelp <http://www1.montpellier.inra.fr/CBGP/software/PoolSeqUtils/GAUTIER_etal_MEC_2013_FILES/poolne_estim_docs.tar.gz> ;
     sc:url "http://www1.montpellier.inra.fr/CBGP/software/PoolSeqUtils/" .
 
+<https://bio.tools/poolnet> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_0602,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1109/TPAMI.2021.3140168>,
+        "pubmed:34982676" ;
+    sc:description "Exploring the Potential of Pooling for Salient Object Detection." ;
+    sc:featureList edam:operation_0479,
+        edam:operation_3436 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "PoolNet" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/backseason/PoolNet" .
+
 <https://bio.tools/popSTR2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0157,
         edam:topic_0625,
         edam:topic_2885 ;
@@ -372770,7 +391994,7 @@ The Pompe disease GAA variant database represents an effort to collect all known
     sc:url "https://github.com/DecodeGenetics/popSTR" .
 
 <https://bio.tools/popabc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_3053 ;
@@ -372785,7 +392009,7 @@ The Pompe disease GAA variant database represents an effort to collect all known
     sc:url "http://code.google.com/p/popabc/" .
 
 <https://bio.tools/popamaranth> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0780,
         edam:topic_2885,
@@ -372802,7 +392026,7 @@ The Pompe disease GAA variant database represents an effort to collect all known
     sc:url "http://amaranthgdb.org/popamaranth.html" .
 
 <https://bio.tools/popart-ibm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3305,
@@ -372824,7 +392048,7 @@ The Pompe disease GAA variant database represents an effort to collect all known
     sc:url "https://github.com/BDI-pathogens/POPART-IBM" .
 
 <https://bio.tools/popbam> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3056 ;
@@ -372839,7 +392063,7 @@ The Pompe disease GAA variant database represents an effort to collect all known
     sc:url "http://popbam.sourceforge.net/" .
 
 <https://bio.tools/popdist> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_3053,
@@ -372857,7 +392081,7 @@ The Pompe disease GAA variant database represents an effort to collect all known
     sc:url "http://genetics.agrsci.dk/~bernt/popgen/" .
 
 <https://bio.tools/popf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3335,
         edam:topic_3421,
         edam:topic_3474,
@@ -372873,7 +392097,7 @@ Risk Prediction Platform for Postoperative Pancreatic Fistula (POPF).""" ;
     sc:url "http://popfrisk.smchbp.org" .
 
 <https://bio.tools/popgev> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0654,
@@ -372889,8 +392113,25 @@ Risk Prediction Platform for Postoperative Pancreatic Fistula (POPF).""" ;
     sc:softwareHelp <http://www.soyomics.com/popgev/help.html> ;
     sc:url "http://www.soyomics.com/popgev/" .
 
+<https://bio.tools/popharvest> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:citation <https://doi.org/10.1002/ECE3.8212>,
+        "pmcid:PMC8668730",
+        "pubmed:34938457" ;
+    sc:description "An R package to assess the sustainability of harvesting regimes of bird populations." ;
+    sc:featureList edam:operation_3435,
+        edam:operation_3946 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "popharvest" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/popharvest/popharvest" .
+
 <https://bio.tools/pophelper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -372908,8 +392149,32 @@ Risk Prediction Platform for Postoperative Pancreatic Fistula (POPF).""" ;
     sc:url "http://pophelper.com/" ;
     biotools:primaryContact "Support" .
 
+<https://bio.tools/pophumanvar> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_0622,
+        edam:topic_0625,
+        edam:topic_2885,
+        edam:topic_3517 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAB925>,
+        "pmcid:PMC8728255",
+        "pubmed:34664660" ;
+    sc:description "An interactive application for the functional characterization and prioritization of adaptive genomic variants in humans." ;
+    sc:featureList edam:operation_0487,
+        edam:operation_3196,
+        edam:operation_3226,
+        edam:operation_3454 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "PopHumanVar" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://pophumanvar.uab.cat" .
+
 <https://bio.tools/popi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btm061> ;
@@ -372925,7 +392190,7 @@ Risk Prediction Platform for Postoperative Pancreatic Fistula (POPF).""" ;
     sc:url "http://iclab.life.nctu.edu.tw/POPI/" .
 
 <https://bio.tools/popins> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3053 ;
@@ -372938,7 +392203,7 @@ Risk Prediction Platform for Postoperative Pancreatic Fistula (POPF).""" ;
     sc:url "https://github.com/bkehr/popins" .
 
 <https://bio.tools/popins2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
@@ -372957,7 +392222,7 @@ Risk Prediction Platform for Postoperative Pancreatic Fistula (POPF).""" ;
     sc:url "https://github.com/kehrlab/PopIns2" .
 
 <https://bio.tools/popisk> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0123,
         edam:topic_0804 ;
@@ -372974,18 +392239,18 @@ Risk Prediction Platform for Postoperative Pancreatic Fistula (POPF).""" ;
 
 <https://bio.tools/popitam> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2886" ;
-            sc:name "Protein sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2886" ],
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3652" ;
+            sc:name "Mass spectrometry spectra" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
+            sc:additionalType "http://edamontology.org/data_2886" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Peptide identification" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0601,
@@ -373007,7 +392272,7 @@ Risk Prediction Platform for Postoperative Pancreatic Fistula (POPF).""" ;
     sc:url "https://github.com/chernan/popitam" .
 
 <https://bio.tools/popmusic> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0123,
         edam:topic_0130,
@@ -373033,7 +392298,7 @@ SNPMuSiC predicts whether protein variants are deleterious or benign due to stab
     biotools:primaryContact "Dezyme Team" .
 
 <https://bio.tools/popoolation> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_3053,
         edam:topic_3056 ;
@@ -373048,7 +392313,7 @@ SNPMuSiC predicts whether protein variants are deleterious or benign due to stab
     biotools:primaryContact "Robert Kofler" .
 
 <https://bio.tools/popoolation2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_2885,
@@ -373064,7 +392329,7 @@ SNPMuSiC predicts whether protein variants are deleterious or benign due to stab
     biotools:primaryContact "Robert Kofler" .
 
 <https://bio.tools/poppunk> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3056 ;
@@ -373080,7 +392345,7 @@ SNPMuSiC predicts whether protein variants are deleterious or benign due to stab
     biotools:primaryContact "John Lees" .
 
 <https://bio.tools/pops> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0166 ;
     sc:citation "pubmed:12087181",
@@ -373094,7 +392359,7 @@ SNPMuSiC predicts whether protein variants are deleterious or benign due to stab
     sc:url "http://mathbio.nimr.mrc.ac.uk/wiki/POPS" .
 
 <https://bio.tools/pops-protease> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0123,
         edam:topic_0128 ;
@@ -373110,7 +392375,7 @@ SNPMuSiC predicts whether protein variants are deleterious or benign due to stab
     sc:url "http://pops.csse.monash.edu.au/" .
 
 <https://bio.tools/popscomp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0157,
         edam:topic_0602 ;
@@ -373129,8 +392394,29 @@ SNPMuSiC predicts whether protein variants are deleterious or benign due to stab
     biotools:primaryContact "Franca Fraternali",
         "Jens Kleinjung" .
 
+<https://bio.tools/popsicler> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0091,
+        edam:topic_0203,
+        edam:topic_2229,
+        edam:topic_3170 ;
+    sc:citation <https://doi.org/10.1016/J.JMB.2022.167560>,
+        "pubmed:35662457" ;
+    sc:description "A R Package for Pre-processing and Quality Control Analysis of Single Cell RNA-seq Data." ;
+    sc:featureList edam:operation_2428,
+        edam:operation_3223,
+        edam:operation_3659 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "popsicleR" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/bicciatolab/popsicleR" .
+
 <https://bio.tools/poptree> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3293 ;
@@ -373144,7 +392430,7 @@ SNPMuSiC predicts whether protein variants are deleterious or benign due to stab
     sc:url "http://www.kms.ac.jp/~genomelb/takezaki/poptree2/index.html" .
 
 <https://bio.tools/populationprofiler> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_2269,
@@ -373165,7 +392451,7 @@ SNPMuSiC predicts whether protein variants are deleterious or benign due to stab
     biotools:primaryContact "Damian J. Matuszewski" .
 
 <https://bio.tools/porcupine> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3384 ;
     sc:citation <https://doi.org/10.1371/journal.pcbi.1006064> ;
@@ -373180,7 +392466,7 @@ SNPMuSiC predicts whether protein variants are deleterious or benign due to stab
     biotools:primaryContact "GitHub Issues" .
 
 <https://bio.tools/pore> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0654,
@@ -373196,7 +392482,7 @@ SNPMuSiC predicts whether protein variants are deleterious or benign due to stab
     sc:url "http://sourceforge.net/p/rpore/wiki/Home/" .
 
 <https://bio.tools/pore-porosity> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0769 ;
     sc:citation <https://doi.org/10.26434/CHEMRXIV.10060331.V3> ;
     sc:description "A Code for Deterministic and Systematic Analyses of Porosities." ;
@@ -373205,7 +392491,7 @@ SNPMuSiC predicts whether protein variants are deleterious or benign due to stab
     sc:url "https://github.com/kaitrepte/porE" .
 
 <https://bio.tools/pore-size-distribution-2d-porous-media-images> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3318,
@@ -373223,7 +392509,7 @@ SNPMuSiC predicts whether protein variants are deleterious or benign due to stab
     biotools:primaryContact "Arash Rabbani" .
 
 <https://bio.tools/porelogo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0820 ;
@@ -373243,7 +392529,7 @@ SNPMuSiC predicts whether protein variants are deleterious or benign due to stab
     biotools:primaryContact "Roman Laskowski" .
 
 <https://bio.tools/poretools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3168 ;
@@ -373258,7 +392544,7 @@ SNPMuSiC predicts whether protein variants are deleterious or benign due to stab
     sc:url "https://github.com/arq5x/poretools" .
 
 <https://bio.tools/porewalker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0820,
         edam:topic_2814 ;
@@ -373277,7 +392563,7 @@ SNPMuSiC predicts whether protein variants are deleterious or benign due to stab
     biotools:primaryContact "Roman Laskowski" .
 
 <https://bio.tools/porpoise> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0621,
@@ -373297,7 +392583,7 @@ SNPMuSiC predicts whether protein variants are deleterious or benign due to stab
     sc:url "http://web.unimelb-bioinfortools.cloud.edu.au/Porpoise/" .
 
 <https://bio.tools/portadrop> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0593,
         edam:topic_0749,
         edam:topic_3179,
@@ -373314,7 +392600,7 @@ PortaDrop is a portable digital microfluidic system.""" ;
     sc:url "https://github.com/ewodac/PortaDrop" .
 
 <https://bio.tools/porthomcl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0622,
         edam:topic_3168 ;
@@ -373331,8 +392617,48 @@ Parallel implementation of OrthoMCL.""" ;
     sc:name "PorthoMCL" ;
     sc:url "http://github.com/etabari/PorthoMCL" .
 
+<https://bio.tools/portia> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0602,
+        edam:topic_0634,
+        edam:topic_3173 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC178>,
+        "pubmed:35325022" ;
+    sc:description "Fast and accurate inference of Gene Regulatory Networks through robust precision matrix estimation." ;
+    sc:featureList edam:operation_1781,
+        edam:operation_2437,
+        edam:operation_3435 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "PORTIA" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/AntoinePassemiers/PORTIA" .
+
+<https://bio.tools/portiloop> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0593,
+        edam:topic_3304,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1371/JOURNAL.PONE.0270696>,
+        "pmcid:PMC9394839",
+        "pubmed:35994482" ;
+    sc:description "A deep learning-based open science tool for closed-loop brain stimulation." ;
+    sc:featureList edam:operation_3695 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "Portiloop" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/Portiloop" .
+
 <https://bio.tools/portrait> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0099,
@@ -373349,7 +392675,7 @@ Parallel implementation of OrthoMCL.""" ;
     sc:url "http://www.bioinformatics.org/portrait/" .
 
 <https://bio.tools/ports-3d> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3306,
@@ -373367,7 +392693,7 @@ Parallel implementation of OrthoMCL.""" ;
     biotools:primaryContact "Larry Pierce" .
 
 <https://bio.tools/posa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2814 ;
     sc:citation "pubmed:24838569" ;
@@ -373383,7 +392709,7 @@ Parallel implementation of OrthoMCL.""" ;
     biotools:primaryContact "POSA Support" .
 
 <https://bio.tools/posefilter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Plug-in" ;
     sc:applicationSubCategory edam:topic_0128,
@@ -373403,7 +392729,7 @@ Parallel implementation of OrthoMCL.""" ;
     biotools:primaryContact "Subha Kalyaanamoorthy" .
 
 <https://bio.tools/poseidon> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0084,
         edam:topic_0769 ;
@@ -373420,14 +392746,14 @@ PoSeiDon, a pipeline to detect significantly positive selected sites and possibl
 
 <https://bio.tools/poseview> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ] ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein structure" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3604" ;
+            sc:name "Image" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0602 ;
@@ -373445,7 +392771,7 @@ PoSeiDon, a pipeline to detect significantly positive selected sites and possibl
     sc:url "http://proteinsplus.zbh.uni-hamburg.de/#poseview" .
 
 <https://bio.tools/posmed> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0602,
@@ -373463,7 +392789,7 @@ PoSeiDon, a pipeline to detect significantly positive selected sites and possibl
     sc:url "http://biolod.org/PosMed" .
 
 <https://bio.tools/possum> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0209,
         edam:topic_0749,
@@ -373486,7 +392812,7 @@ PoSeiDon, a pipeline to detect significantly positive selected sites and possibl
     biotools:primaryContact "PoSSuM Support" .
 
 <https://bio.tools/possum-cis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654,
@@ -373502,7 +392828,7 @@ PoSeiDon, a pipeline to detect significantly positive selected sites and possibl
     sc:url "http://zlab.bu.edu/~mfrith/possum/" .
 
 <https://bio.tools/possum-pssm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_3510,
@@ -373520,7 +392846,7 @@ PoSeiDon, a pipeline to detect significantly positive selected sites and possibl
         "Trevor Lithgow" .
 
 <https://bio.tools/possumsearch> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:author "Michael Beckstette",
@@ -373539,7 +392865,7 @@ PoSeiDon, a pipeline to detect significantly positive selected sites and possibl
     sc:url "https://bibiserv.cebitec.uni-bielefeld.de/possumsearch" .
 
 <https://bio.tools/possumsearch2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:author "Michael Beckstette",
@@ -373559,7 +392885,7 @@ PoSeiDon, a pipeline to detect significantly positive selected sites and possibl
     sc:url "https://bibiserv.cebitec.uni-bielefeld.de/possumsearch2" .
 
 <https://bio.tools/post> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3518 ;
@@ -373575,20 +392901,42 @@ PoSeiDon, a pipeline to detect significantly positive selected sites and possibl
     sc:url "http://bioconductor.org/packages/release/bioc/html/POST.html" ;
     biotools:primaryContact "Xueyuan Cao" .
 
+<https://bio.tools/postm> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_3293,
+        edam:topic_3360,
+        edam:topic_3697 ;
+    sc:citation <https://doi.org/10.1186/S40168-022-01266-3>,
+        "pmcid:PMC9171974",
+        "pubmed:35668471" ;
+    sc:description "Phylogeny-guided microbiome OTU-specific association test (POST)." ;
+    sc:featureList edam:operation_0323,
+        edam:operation_0326,
+        edam:operation_0567 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-2.0" ;
+    sc:name "POSTm" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://cran.r-project.org/web/packages/POSTm/POSTm.pdf> ;
+    sc:url "https://CRAN.R-project.org/package=POSTm" .
+
 <https://bio.tools/postman> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ],
+            sc:additionalType "http://edamontology.org/data_2886" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence record" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2886" ;
-            sc:name "Protein sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2886" ] ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Mass spectrometry spectra" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0944" ;
-            sc:name "Peptide mass fingerprint" ;
-            sc:sameAs "http://edamontology.org/data_0944" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0944" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Peptide mass fingerprint" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0601,
@@ -373611,7 +392959,7 @@ PoSeiDon, a pipeline to detect significantly positive selected sites and possibl
     sc:url "http://www.uib.no/en/rg/probe/65847/postman" .
 
 <https://bio.tools/postpi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2269,
         edam:topic_3474 ;
@@ -373626,7 +392974,7 @@ Many modern problems leverage machine learning methods to predict outcomes based
     sc:url "https://github.com/leekgroup/postpi" .
 
 <https://bio.tools/potage> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3308 ;
     sc:author "Nathan S. Watson-Haigh",
@@ -373646,7 +392994,7 @@ Many modern problems leverage machine learning methods to predict outcomes based
         "Radoslaw Suchecki" .
 
 <https://bio.tools/potage-wheat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0102,
@@ -373666,14 +393014,13 @@ Many modern problems leverage machine learning methods to predict outcomes based
 
 <https://bio.tools/potamos> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_3307 ;
     sc:citation <https://doi.org/10.1016/j.compbiomed.2014.10.002>,
@@ -373688,28 +393035,28 @@ Many modern problems leverage machine learning methods to predict outcomes based
     sc:softwareVersion "v2.0" ;
     sc:url "https://potamos.med.uoi.gr/" .
 
-<https://bio.tools/potencies> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0203,
-        edam:topic_0602,
-        edam:topic_0625,
-        edam:topic_2640,
-        edam:topic_3336 ;
-    sc:citation <https://doi.org/10.1101/799106> ;
-    sc:description """Gene-signatures predict biologically relevant dose-response potencies in phenotypic assays.
-
-Abstract Multiplexed gene-signature-based phenotypic assays are increasingly used for the identification and profiling of small molecule-tool compounds and drugs. Here we introduce a method (provided as R-package) for the quantification of the dose-response potency of a gene-signature as EC 50 and IC 50 values. Two signaling pathways were used as models to validate our methods: beta-adrenergic agonistic activity on cAMP generation (dedicated dataset generated for this study) and EGFR inhibitory effect on cancer cell viability. In both cases, potencies derived from multi-gene expression data were highly correlated with orthogonal potencies derived from cAMP and cell growth readouts, and superior to potencies derived from single individual genes.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'gene-signature potencies', 'gene-signature', 'readouts', 'gene-signature-based'""" ;
-    sc:featureList edam:operation_2428,
-        edam:operation_3463,
-        edam:operation_3799 ;
-    sc:name "potencies" ;
-    sc:url "https://doi.org/10.1101/799106" .
+<https://bio.tools/potato> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0632,
+        edam:topic_0736,
+        edam:topic_0769,
+        edam:topic_3318 ;
+    sc:citation <https://doi.org/10.1101/2021.11.11.468103> ;
+    sc:description "An automated pipeline for batch analysis of optical tweezers data." ;
+    sc:featureList edam:operation_0279,
+        edam:operation_0337,
+        edam:operation_3659 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "POTATO" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/REMI-HIRI/POTATO" .
 
 <https://bio.tools/potterswheel> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_2259,
         edam:topic_3569 ;
@@ -373724,7 +393071,7 @@ Abstract Multiplexed gene-signature-based phenotypic assays are increasingly use
     sc:url "http://www.potterswheel.de/" .
 
 <https://bio.tools/pout2prot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -373744,7 +393091,7 @@ Abstract Multiplexed gene-signature-based phenotypic assays are increasingly use
     sc:url "https://pout2prot.ugent.be" .
 
 <https://bio.tools/poutine> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0199,
@@ -373766,7 +393113,7 @@ Abstract Multiplexed gene-signature-based phenotypic assays are increasingly use
     sc:url "https://github.com/Peter-Two-Point-O/POUTINE" .
 
 <https://bio.tools/power> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0084,
@@ -373788,7 +393135,7 @@ Abstract Multiplexed gene-signature-based phenotypic assays are increasingly use
     biotools:primaryContact "Contact Form" .
 
 <https://bio.tools/power-contours> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3304,
         edam:topic_3379 ;
@@ -373802,7 +393149,7 @@ Abstract Multiplexed gene-signature-based phenotypic assays are increasingly use
     sc:url "https://shiny.york.ac.uk/powercontours/" .
 
 <https://bio.tools/poweredbiseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0654,
@@ -373823,7 +393170,7 @@ To use POWEREDBiSeq, you must first download the script POWEREDBiSeqFunctions.R
     sc:url "https://github.com/ds420/POWEREDBiSeq" .
 
 <https://bio.tools/powereqtl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0625,
         edam:topic_2885,
@@ -373841,7 +393188,7 @@ Power and sample size calculation for eQTL analysis based on ANOVA or simple lin
     sc:url "https://bwhbioinfo.shinyapps.io/powerEQTL/" .
 
 <https://bio.tools/powerexplorer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3168,
@@ -373861,7 +393208,7 @@ Power and sample size calculation for eQTL analysis based on ANOVA or simple lin
     biotools:primaryContact "Xu Qiao" .
 
 <https://bio.tools/powerfit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0611,
         edam:topic_1317 ;
@@ -373905,7 +393252,7 @@ Power and sample size calculation for eQTL analysis based on ANOVA or simple lin
     biotools:primaryContact <http://orcid.org/0000-0001-7369-1322> .
 
 <https://bio.tools/powergwasinteraction> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3053,
@@ -373921,7 +393268,7 @@ Power and sample size calculation for eQTL analysis based on ANOVA or simple lin
     sc:url "http://kooperberg.fhcrc.org/soft.html" .
 
 <https://bio.tools/powergxe> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3053 ;
@@ -373936,7 +393283,7 @@ Power and sample size calculation for eQTL analysis based on ANOVA or simple lin
     sc:url "http://www.hsph.harvard.edu/peter-kraft/software/" .
 
 <https://bio.tools/powertcr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3063 ;
     sc:citation <https://doi.org/10.1101/297119> ;
@@ -373954,7 +393301,7 @@ Power and sample size calculation for eQTL analysis based on ANOVA or simple lin
     biotools:primaryContact "Hillary Koch" .
 
 <https://bio.tools/powertools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3168,
         edam:topic_3342,
@@ -373968,7 +393315,7 @@ Power and sample size calculation for eQTL analysis based on ANOVA or simple lin
     sc:url "https://joelarkman.shinyapps.io/PowerTools/" .
 
 <https://bio.tools/powmic> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3174,
         edam:topic_3697,
@@ -373984,7 +393331,7 @@ Power analysis is essential to decide the sample size of metagenomic sequencing
     sc:url "https://github.com/lichen-lab/powmic" .
 
 <https://bio.tools/powsc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3170,
         edam:topic_3518,
@@ -374003,7 +393350,7 @@ POWSC is a R package designed for scRNA-seq with a wild range of usage. It can p
     sc:url "https://github.com/suke18/POWSC" .
 
 <https://bio.tools/poxo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0204,
@@ -374025,7 +393372,7 @@ POWSC is a R package designed for scRNA-seq with a wild range of usage. It can p
     biotools:primaryContact "Webmaster" .
 
 <https://bio.tools/ppa-pred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128 ;
     sc:citation "pubmed:25172924" ;
@@ -374040,7 +393387,7 @@ POWSC is a R package designed for scRNA-seq with a wild range of usage. It can p
     sc:url "http://www.iitm.ac.in/bioinfo/PPA_Pred/" .
 
 <https://bio.tools/ppai> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0154,
         edam:topic_0659,
@@ -374063,7 +393410,7 @@ PPAI is a novel web-server to predict aptamers and protein-aptamer interactions
     sc:url "http://39.96.85.9/PPAI" .
 
 <https://bio.tools/ppalign> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0160,
@@ -374088,7 +393435,7 @@ PPAI is a novel web-server to predict aptamers and protein-aptamer interactions
     sc:url "https://www-dyliss.irisa.fr/ppalign" .
 
 <https://bio.tools/ppb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0202,
@@ -374106,7 +393453,7 @@ PPAI is a novel web-server to predict aptamers and protein-aptamer interactions
     biotools:primaryContact "Jean-Louis Reymond" .
 
 <https://bio.tools/ppcmatrix> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0602 ;
@@ -374120,7 +393467,7 @@ PPAI is a novel web-server to predict aptamers and protein-aptamer interactions
     sc:url "http://www.bionut.ki.se/groups/tbu/software/#PPCMatrix" .
 
 <https://bio.tools/ppd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0219,
         edam:topic_0621,
@@ -374135,7 +393482,7 @@ PPAI is a novel web-server to predict aptamers and protein-aptamer interactions
     sc:url "http://lin-group.cn/database/ppd/" .
 
 <https://bio.tools/ppdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0780,
@@ -374153,8 +393500,24 @@ PPAI is a novel web-server to predict aptamers and protein-aptamer interactions
         "Windows" ;
     sc:url "http://sitem.herts.ac.uk/aeru/ppdb/en/index.htm" .
 
+<https://bio.tools/ppdbench> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:citation <https://doi.org/10.1186/s12859-018-2449-y>,
+        "pmcid:PMC7394329",
+        "pubmed:30717654" ;
+    sc:description "This server is made in order to provide an easy webserver to calculate FNAT, L-RMSD and I-RMSD values of docked and original poses of protein-peptide complexes." ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "ppdbench" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/ppdbench/> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/ppdbench/" .
+
 <https://bio.tools/pperturb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0130,
         edam:topic_0593,
@@ -374177,7 +393540,7 @@ pPerturb provides a rapid and experimentally consistent measure of the extent to
     sc:url "http://pbl.biotech.iitm.ac.in/pPerturb" .
 
 <https://bio.tools/ppfinder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654 ;
     sc:citation <https://doi.org/10.1101/gr.4766206> ;
@@ -374190,7 +393553,7 @@ pPerturb provides a rapid and experimentally consistent measure of the extent to
     sc:url "http://mblab.wustl.edu/software.html#ppfinderLink" .
 
 <https://bio.tools/ppfold> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0099 ;
@@ -374209,7 +393572,7 @@ pPerturb provides a rapid and experimentally consistent measure of the extent to
     biotools:primaryContact "Zsuzsanna Sukosd" .
 
 <https://bio.tools/ppg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -374227,7 +393590,7 @@ pPerturb provides a rapid and experimentally consistent measure of the extent to
     sc:url "http://bioserv.rpbs.univ-paris-diderot.fr/services/PPG/" .
 
 <https://bio.tools/ppgsynth> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3335 ;
     sc:citation <https://doi.org/10.3389/FMED.2020.597774>,
@@ -374241,14 +393604,13 @@ Photoplethysmography (PPG) is increasingly used in digital health, exceptionally
 
 <https://bio.tools/ppi> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ] ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein structure" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1772" ;
-            sc:name "Score" ;
-            sc:sameAs "http://edamontology.org/data_1772" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1772" ;
+            sc:name "Score" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128 ;
     sc:citation <https://doi.org/10.1007/s10822-012-9626-2> ;
@@ -374263,8 +393625,30 @@ Photoplethysmography (PPG) is increasingly used in digital health, exceptionally
     sc:softwareHelp <http://proteinsplus.zbh.uni-hamburg.de/help/index> ;
     sc:url "http://proteinsplus.zbh.uni-hamburg.de/#ppi" .
 
+<https://bio.tools/ppi-affinity> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0121,
+        edam:topic_0128,
+        edam:topic_0154,
+        edam:topic_0199,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1021/ACS.JPROTEOME.2C00020>,
+        "pubmed:35654412" ;
+    sc:description "A Web Tool for the Prediction and Optimization of Protein-Peptide and Protein-Protein Binding Affinity." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_2464,
+        edam:operation_2492,
+        edam:operation_3938 ;
+    sc:isAccessibleForFree true ;
+    sc:name "PPI-Affinity" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://protdcal.zmb.uni-due.de/PPIAffinity" .
+
 <https://bio.tools/ppi-mass> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0128,
@@ -374288,7 +393672,7 @@ Photoplethysmography (PPG) is increasingly used in digital health, exceptionally
     sc:url "https://minicad.appsbio.utalca.cl/ppi-mass" .
 
 <https://bio.tools/ppi-ps> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0154 ;
@@ -374301,7 +393685,7 @@ Photoplethysmography (PPG) is increasingly used in digital health, exceptionally
     sc:url "http://faculty.uaeu.ac.ae/nzaki/PPI_PS.htm" .
 
 <https://bio.tools/ppi3d> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0154,
         edam:topic_0176,
@@ -374323,7 +393707,7 @@ Welcome to PPI3D − a web server for searching, analyzing and modeling protein
     sc:url "http://bioinformatics.lt/ppi3d" .
 
 <https://bio.tools/ppic9> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0108 ;
     sc:citation "pubmed:17239823" ;
@@ -374335,7 +393719,7 @@ Welcome to PPI3D − a web server for searching, analyzing and modeling protein
     sc:url "http://www.biosun.org.cn/ppic9/" .
 
 <https://bio.tools/ppicompare> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0622,
@@ -374353,7 +393737,7 @@ Welcome to PPI3D − a web server for searching, analyzing and modeling protein
     biotools:primaryContact "Volkhard HelmsEmail author" .
 
 <https://bio.tools/ppidomainminer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0154,
@@ -374374,18 +393758,18 @@ Welcome to PPI3D − a web server for searching, analyzing and modeling protein
 
 <https://bio.tools/ppiexp> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ] ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Expression data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3768" ;
-            sc:name "Clustered expression profiles" ;
-            sc:sameAs "http://edamontology.org/data_3768" ],
+            sc:additionalType "http://edamontology.org/data_3768" ;
+            sc:encodingFormat "http://edamontology.org/format_3603" ;
+            sc:name "Clustered expression profiles" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:encodingFormat "http://edamontology.org/format_3603" ;
+            sc:name "Pathway or network" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0128 ;
@@ -374404,7 +393788,7 @@ Welcome to PPI3D − a web server for searching, analyzing and modeling protein
     sc:url "http://www.fgvis.com/expressvis/PPIExp" .
 
 <https://bio.tools/ppigremlin> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0130,
         edam:topic_0154,
@@ -374427,7 +393811,7 @@ Background: Protein-protein interactions (PPIs) are fundamental in many biologic
     sc:url "https://ppigremlin.github.io/" .
 
 <https://bio.tools/ppiipred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0154,
         edam:topic_0736,
@@ -374450,7 +393834,7 @@ This can generate an alignment for an existing UNIPROT sequence and then run it
     sc:url "http://bioware.ucd.ie/PPIIPRED" .
 
 <https://bio.tools/ppim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0128 ;
     sc:citation <https://doi.org/10.1104/pp.15.01821>,
@@ -374463,7 +393847,7 @@ This can generate an alignment for an existing UNIPROT sequence and then run it
     sc:url "http://comp-sysbio.org/ppim/" .
 
 <https://bio.tools/ppinfer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0602,
@@ -374482,7 +393866,7 @@ This can generate an alignment for an existing UNIPROT sequence and then run it
     biotools:primaryContact "Dongmin Jung" .
 
 <https://bio.tools/ppiome> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0154,
         edam:topic_0202,
@@ -374499,18 +393883,18 @@ This can generate an alignment for an existing UNIPROT sequence and then run it
 
 <https://bio.tools/ppip> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ],
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Expression data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3245" ;
+            sc:name "Mass spectrometry spectra" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2974" ;
-            sc:name "Protein sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_2974" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2974" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Protein sequence (raw)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121 ;
     sc:citation <https://doi.org/10.1021/acs.jproteome.8b00718>,
@@ -374527,7 +393911,7 @@ This can generate an alignment for an existing UNIPROT sequence and then run it
     sc:url "https://github.com/Shawn-Xu/PPIP" .
 
 <https://bio.tools/ppipre> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0602,
@@ -374544,7 +393928,7 @@ This can generate an alignment for an existing UNIPROT sequence and then run it
     biotools:primaryContact "Lin Gao" .
 
 <https://bio.tools/ppisearch> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0602,
@@ -374567,7 +393951,7 @@ This can generate an alignment for an existing UNIPROT sequence and then run it
     biotools:primaryContact "Dr. Jinn-Moon Yang" .
 
 <https://bio.tools/ppistats> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0078,
@@ -374587,7 +393971,7 @@ This can generate an alignment for an existing UNIPROT sequence and then run it
     biotools:primaryContact "BioConductor Package Maintainer" .
 
 <https://bio.tools/ppisurv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_2640 ;
@@ -374602,7 +393986,7 @@ This can generate an alignment for an existing UNIPROT sequence and then run it
     sc:url "http://www.bioprofiling.de/GEO/PPISURV/ppisurv.html" .
 
 <https://bio.tools/ppixpress> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2259,
@@ -374618,7 +394002,7 @@ This can generate an alignment for an existing UNIPROT sequence and then run it
     sc:url "http://sourceforge.net/projects/ppixpress/" .
 
 <https://bio.tools/pplkc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0154,
         edam:topic_2275,
@@ -374636,7 +394020,7 @@ Potassium channels play a key role in regulating the flow of ions through the pl
     sc:url "https://github.com/bio-coding/PPLKC-" .
 
 <https://bio.tools/ppmap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0780,
         edam:topic_3810 ;
@@ -374650,8 +394034,31 @@ PPMaP is a software for plant phonological phase prediction and mapping. This wo
     sc:name "PPMaP" ;
     sc:url "https://github.com/Atoundem/PPMaP" .
 
+<https://bio.tools/ppmdb> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_0602,
+        edam:topic_0632,
+        edam:topic_0780,
+        edam:topic_3168 ;
+    sc:citation <https://doi.org/10.1038/S41598-021-00504-2>,
+        "pmcid:PMC8556342",
+        "pubmed:34716373" ;
+    sc:description "An interactive hub for pathways-based markers in plant genomes." ;
+    sc:featureList edam:operation_0533,
+        edam:operation_3282,
+        edam:operation_3926 ;
+    sc:isAccessibleForFree true ;
+    sc:name "PPMdb" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <http://ppmdb.easyomics.org/Manual.pdf> ;
+    sc:url "http://ppmdb.easyomics.org" .
+
 <https://bio.tools/ppms> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0081 ;
@@ -374664,16 +394071,33 @@ PPMaP is a software for plant phonological phase prediction and mapping. This wo
     sc:softwareHelp <https://sites.google.com/site/guofeics/ppms-online-document> ;
     sc:url "https://sites.google.com/site/guofeics/ppms-online-document" .
 
+<https://bio.tools/ppos> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0089,
+        edam:topic_3315,
+        edam:topic_3379 ;
+    sc:citation <https://doi.org/10.21203/RS.3.RS-930504/V1> ;
+    sc:description "Conditional power, predictive power and probability of success in clinical trials with continuous, binary and time-to-event endpoints." ;
+    sc:featureList edam:operation_3435 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Other" ;
+    sc:name "PPoS" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://ppos.herokuapp.com/" .
+
 <https://bio.tools/pppbenchmark> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2749" ;
-            sc:name "Genome identifier" ;
-            sc:sameAs "http://edamontology.org/data_2749" ] ;
+            sc:additionalType "http://edamontology.org/data_2749" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Genome identifier" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2070" ;
-            sc:name "Sequence motif (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_2070" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2070" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Sequence motif (nucleic acid)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3511 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btp191>,
@@ -374692,7 +394116,7 @@ PPMaP is a software for plant phonological phase prediction and mapping. This wo
     biotools:primaryContact <http://orcid.org/0000-0003-4327-3730> .
 
 <https://bio.tools/pprint> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0602 ;
@@ -374705,10 +394129,23 @@ PPMaP is a software for plant phonological phase prediction and mapping. This wo
         "Mac",
         "Windows" ;
     sc:softwareHelp <http://crdd.osdd.net/raghava//pprint/help.html> ;
-    sc:url "http://www.imtech.res.in/raghava/pprint/" .
+    sc:url "http://webs.iiitd.edu.in/raghava/pprint/" .
+
+<https://bio.tools/pprint2> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:description "A web server for predicting RNA interacting residues." ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "pprint2" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/pprint2/> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/pprint2/" .
 
 <https://bio.tools/pps> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0078 ;
     sc:citation <https://doi.org/10.1186/1471-2105-5-79>,
@@ -374725,16 +394162,36 @@ PPMaP is a software for plant phonological phase prediction and mapping. This wo
     sc:softwareVersion "1.0" ;
     sc:url "http://pps.biocuckoo.org/" .
 
+<https://bio.tools/pps_r> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0602,
+        edam:topic_3172,
+        edam:topic_3411 ;
+    sc:citation <https://doi.org/10.1186/S12859-021-04542-5>,
+        "pmcid:PMC8729005",
+        "pubmed:34986802" ;
+    sc:description "R package to perform PPS analysis on graphical models" ;
+    sc:featureList edam:operation_1812,
+        edam:operation_3659,
+        edam:operation_3927 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "PPS" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/nathan-gill/pps" .
+
 <https://bio.tools/ppsc> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0883" ;
-            sc:name "Structure" ;
-            sc:sameAs "http://edamontology.org/data_0883" ] ;
+            sc:additionalType "http://edamontology.org/data_0883" ;
+            sc:name "Structure" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2085" ;
-            sc:name "Structure report" ;
-            sc:sameAs "http://edamontology.org/data_2085" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2085" ;
+            sc:name "Structure report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0081 ;
     sc:citation <https://doi.org/10.1007/s00726-012-1407-7> ;
@@ -374751,14 +394208,13 @@ PPMaP is a software for plant phonological phase prediction and mapping. This wo
 
 <https://bio.tools/pptasedb> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0989" ;
-            sc:name "Protein identifier" ;
-            sc:sameAs "http://edamontology.org/data_0989" ] ;
+            sc:additionalType "http://edamontology.org/data_0989" ;
+            sc:name "Protein identifier" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0896" ;
-            sc:name "Protein report" ;
-            sc:sameAs "http://edamontology.org/data_0896" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0896" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Protein report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0623 ;
     sc:description "Prokaryotic protein phosphatases." ;
@@ -374767,7 +394223,7 @@ PPMaP is a software for plant phonological phase prediction and mapping. This wo
     sc:url "http://vigen.biochem.vt.edu/p3d/p3d.htm" .
 
 <https://bio.tools/pptm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0601,
         edam:topic_3068 ;
@@ -374782,7 +394238,7 @@ PPMaP is a software for plant phonological phase prediction and mapping. This wo
     sc:url "http://bioinformatics.ustc.edu.cn/pptm/" .
 
 <https://bio.tools/pptpp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
         edam:topic_3300,
@@ -374804,7 +394260,7 @@ Your javac need to support the version 6, therefore, we recommend to use JDK 11
     sc:url "https://github.com/YPZ858/PPTPP" .
 
 <https://bio.tools/ppus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0659 ;
@@ -374819,7 +394275,7 @@ Your javac need to support the version 6, therefore, we recommend to use JDK 11
     sc:url "http://lyh.pkmu.cn/ppus/" .
 
 <https://bio.tools/ppx> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -374839,14 +394295,12 @@ Your javac need to support the version 6, therefore, we recommend to use JDK 11
 
 <https://bio.tools/pqpq> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1233" ;
-            sc:name "Sequence set (protein)" ;
-            sc:sameAs "http://edamontology.org/data_1233" ] ;
+            sc:additionalType "http://edamontology.org/data_1233" ;
+            sc:name "Sequence set (protein)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:name "Sequence features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1074/mcp.M111.010264> ;
@@ -374862,7 +394316,7 @@ Your javac need to support the version 6, therefore, we recommend to use JDK 11
     sc:url "http://forshed.se/jenny/index.php?n=Research.SoftwareAmpCode" .
 
 <https://bio.tools/pqsfinder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library",
         "Web application" ;
@@ -374884,32 +394338,8 @@ Your javac need to support the version 6, therefore, we recommend to use JDK 11
     sc:url "https://pqsfinder.fi.muni.cz" ;
     biotools:primaryContact "Jiri Hon" .
 
-<https://bio.tools/pqsfinder_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0099,
-        edam:topic_0654,
-        edam:topic_3170 ;
-    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTZ928>,
-        "pubmed:31830256" ;
-    sc:description """G-quadruplex prediction using optimized pqsfinder algorithm.
-
-pqsfinder – imperfection-tolerant G-quadruplex prediction.
-
-Identification of potential quadruplex forming sequences.
-
-Pqsfinder detects DNA and RNA sequence patterns that are likely to fold into an intramolecular G-quadruplex (G4). Unlike many other approaches, pqsfinder is able to detect G4s folded from imperfect G-runs containing bulges or mismatches or G4s having long loops. Pqsfinder also assigns an integer score to each hit that was fitted on G4 sequencing data and corresponds to expected stability of the folded G4.
-
-||| NAME EQUAL TO (PUB. DIFFERENT) bio.tools/pqsfinder.
-
-||| COMMON LINK WITH (PUB. & NAME DIFFERENT) bio.tools/CytoPacq (FI.MUNI.CZ)""" ;
-    sc:featureList edam:operation_0429,
-        edam:operation_0432,
-        edam:operation_0475 ;
-    sc:license "BSD-2-Clause" ;
-    sc:name "pqsfinder_autogenerated" ;
-    sc:url "https://pqsfinder.fi.muni.cz" .
-
 <https://bio.tools/pr2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0621,
@@ -374930,7 +394360,7 @@ A database of eukaryotic rRNA primers and primer sets for metabarcoding studies
     sc:url "https://app.pr2-primers.org" .
 
 <https://bio.tools/pr2-primers> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0621,
@@ -374953,7 +394383,7 @@ A database of eukaryotic rRNA primers and primer sets for metabarcoding studies
     sc:url "https://app.pr2-primers.org" .
 
 <https://bio.tools/pr2align> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080 ;
@@ -374970,7 +394400,7 @@ A database of eukaryotic rRNA primers and primer sets for metabarcoding studies
     sc:url "http://pr2align.rit.albany.edu/" .
 
 <https://bio.tools/pracriti> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3301,
         edam:topic_3305,
         edam:topic_3315,
@@ -374985,16 +394415,42 @@ PRediction and Assesment of CoRona Infections and Transmission in India.""" ;
     sc:name "PRACRITI" ;
     sc:url "http://pracriti.iitd.ac.in" .
 
+<https://bio.tools/practical_haplotype_graph> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0196,
+        edam:topic_0622,
+        edam:topic_0625,
+        edam:topic_3673,
+        edam:topic_3676 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC410>,
+        "pmcid:PMC9344836",
+        "pubmed:35748708" ;
+    sc:description "Platform for storing and using pangenomes for imputation." ;
+    sc:featureList edam:operation_0484,
+        edam:operation_0487,
+        edam:operation_3196,
+        edam:operation_3198,
+        edam:operation_3557 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "Practical Haplotype Graph" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://bitbucket.org/bucklerlab/practicalhaplotypegraph/wiki/Home_variantTables> ;
+    sc:url "https://bitbucket.org/bucklerlab/practicalhaplotypegraph/wiki/Home" .
+
 <https://bio.tools/prada> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3108" ;
-            sc:name "Experimental measurement" ;
-            sc:sameAs "http://edamontology.org/data_3108" ] ;
+            sc:additionalType "http://edamontology.org/data_3108" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Experimental measurement" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1772" ;
-            sc:name "Score" ;
-            sc:sameAs "http://edamontology.org/data_1772" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1772" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "Score" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -375017,7 +394473,7 @@ PRediction and Assesment of CoRona Infections and Transmission in India.""" ;
     biotools:primaryContact "Florian Hahne" .
 
 <https://bio.tools/prada-rnaseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0203,
@@ -375033,7 +394489,7 @@ PRediction and Assesment of CoRona Infections and Transmission in India.""" ;
     sc:url "http://bioinformatics.mdanderson.org/main/PRADA:Overview" .
 
 <https://bio.tools/praline> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0082,
@@ -375061,7 +394517,7 @@ PRediction and Assesment of CoRona Infections and Transmission in India.""" ;
     biotools:primaryContact "Centre for Integrative Bioinformatics VU (IBIVU), Vrije Universiteit" .
 
 <https://bio.tools/praline-2-a> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0769 ;
@@ -375076,7 +394532,7 @@ PRediction and Assesment of CoRona Infections and Transmission in India.""" ;
     sc:url "https://github.com/ibivu/PRALINE/" .
 
 <https://bio.tools/prana> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_3063,
@@ -375092,7 +394548,7 @@ PRediction and Assesment of CoRona Infections and Transmission in India.""" ;
     sc:url "http://pranaviz.bath.ac.uk/" .
 
 <https://bio.tools/pranc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3053,
@@ -375111,7 +394567,7 @@ can be used to compute the probabilities of ranked or unranked phylogenetic gene
     sc:url "http://github.com/anastasiiakim/PRANC" .
 
 <https://bio.tools/prank> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1007/978-1-62703-646-7_10> ;
@@ -375126,7 +394582,7 @@ can be used to compute the probabilities of ranked or unranked phylogenetic gene
     sc:url "http://wasabiapp.org/software/prank/" .
 
 <https://bio.tools/prank_api> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1007/978-1-62703-646-7_10>,
@@ -375143,7 +394599,7 @@ can be used to compute the probabilities of ranked or unranked phylogenetic gene
     sc:url "http://www.ebi.ac.uk/Tools/webservices/services/msa/prank_rest" .
 
 <https://bio.tools/prap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0625,
         edam:topic_0769,
@@ -375163,7 +394619,7 @@ PRAP is a platform independent Python3 tool used to analyze pan-resistome charac
     sc:url "https://github.com/syyrjx-hyc/PRAP" .
 
 <https://bio.tools/prapi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0749,
@@ -375181,7 +394637,7 @@ PRAP is a platform independent Python3 tool used to analyze pan-resistome charac
     biotools:primaryContact "Lianfeng Gu" .
 
 <https://bio.tools/praptorx_property> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2275,
         edam:topic_2814 ;
@@ -375195,8 +394651,31 @@ PRAP is a platform independent Python3 tool used to analyze pan-resistome charac
     sc:softwareHelp <http://raptorx2.uchicago.edu/StructurePropertyPred/documentation/> ;
     sc:url "http://raptorx2.uchicago.edu/StructurePropertyPred/predict/" .
 
+<https://bio.tools/pras_server> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1127" ;
+            sc:name "PDB ID" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_1317,
+        edam:topic_3542 ;
+    sc:citation <https://doi.org/10.1021/ACS.JCIM.2C00571>,
+        "pubmed:36000562" ;
+    sc:description "A Web Server to Repair PDB Structures, Add Missing Heavy Atoms and Hydrogen Atoms, and Assign Secondary Structures by Amide Interactions." ;
+    sc:featureList edam:operation_0319,
+        edam:operation_0337,
+        edam:operation_2488 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "PRAS" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://www.protein-science.com" .
+
 <https://bio.tools/prasa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0128 ;
@@ -375209,23 +394688,22 @@ PRAP is a platform independent Python3 tool used to analyze pan-resistome charac
 
 <https://bio.tools/pratt> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:name "Protein sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2762" ;
-            sc:name "Sequence signature report" ;
-            sc:sameAs "http://edamontology.org/data_2762" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2762" ;
+            sc:name "Sequence signature report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0160 ;
     sc:author "Inge Jonassen",
-        "Web Production" ;
-    sc:citation <https://doi.org/10.1002/pro.5560040817> ;
+        "Job Dispatcher" ;
+    sc:citation <https://doi.org/10.1002/pro.5560040817>,
+        <https://doi.org/10.1093/nar/gkac240> ;
     sc:description "Discover patterns in unaligned protein sequences." ;
     sc:featureList edam:operation_0238 ;
-    sc:name "Pratt" ;
+    sc:name "Pratt (EBI)" ;
     sc:operatingSystem "Linux",
         "Mac",
         "Windows" ;
@@ -375235,10 +394713,10 @@ PRAP is a platform independent Python3 tool used to analyze pan-resistome charac
         <http://www.ebi.ac.uk/about/terms-of-use> ;
     sc:softwareVersion "1" ;
     sc:url "http://www.ebi.ac.uk/Tools/pfa/pratt/" ;
-    biotools:primaryContact "Web Production" .
+    biotools:primaryContact "Job Dispatcher Team" .
 
 <https://bio.tools/prbp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0099,
@@ -375255,7 +394733,7 @@ PRAP is a platform independent Python3 tool used to analyze pan-resistome charac
     sc:url "http://www.cbi.seu.edu.cn/PRBP/" .
 
 <https://bio.tools/prbr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0099,
@@ -375273,7 +394751,7 @@ PRAP is a platform independent Python3 tool used to analyze pan-resistome charac
     sc:url "http://www.cbi.seu.edu.cn/PRBR/" .
 
 <https://bio.tools/prcbench> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0607,
         edam:topic_2269,
@@ -375299,7 +394777,7 @@ PRAP is a platform independent Python3 tool used to analyze pan-resistome charac
     biotools:primaryContact "Takaya Saito" .
 
 <https://bio.tools/prclust> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:author "Chong Wu",
         "Wei Pan" ;
@@ -375316,7 +394794,7 @@ Clustering is unsupervised and exploratory in nature. Yet, it can be performed t
     sc:url "https://cran.r-project.org/web/packages/prclust/index.html" .
 
 <https://bio.tools/prdos> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -375338,7 +394816,7 @@ Clustering is unsupervised and exploratory in nature. Yet, it can be performed t
     biotools:primaryContact "PrDOS Support" .
 
 <https://bio.tools/preanticov> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -375354,7 +394832,7 @@ Clustering is unsupervised and exploratory in nature. Yet, it can be performed t
     sc:url "https://github.com/poncey/PreAntiCoV" .
 
 <https://bio.tools/prebi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -375370,8 +394848,30 @@ Clustering is unsupervised and exploratory in nature. Yet, it can be performed t
     sc:name "PreBI" ;
     sc:url "http://pre-s.protein.osaka-u.ac.jp/prebi/" .
 
+<https://bio.tools/prebinds> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0202,
+        edam:topic_0209,
+        edam:topic_0623,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.3389/FMOLB.2021.758480>,
+        "pmcid:PMC8685504",
+        "pubmed:34938773" ;
+    sc:description "An Interactive Web Tool to Create Appropriate Datasets for Predicting Compound-Protein Interactions." ;
+    sc:featureList edam:operation_2489,
+        edam:operation_3936,
+        edam:operation_4009 ;
+    sc:isAccessibleForFree true ;
+    sc:name "PreBINDS" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://binds.lifematics.work/" .
+
 <https://bio.tools/prebs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -375394,7 +394894,7 @@ Clustering is unsupervised and exploratory in nature. Yet, it can be performed t
     biotools:primaryContact "Karolis Uziela" .
 
 <https://bio.tools/precise> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654,
@@ -375408,7 +394908,7 @@ Clustering is unsupervised and exploratory in nature. Yet, it can be performed t
     sc:url "http://www.wageningenur.nl/en/show/PRECISE-Prediction-of-REgulatory-CISacting-Elements.htm" .
 
 <https://bio.tools/precise-domain> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3360,
         edam:topic_3379,
         edam:topic_3577 ;
@@ -375423,7 +394923,7 @@ Clustering is unsupervised and exploratory in nature. Yet, it can be performed t
     sc:url "https://github.com/NKI-CCB/PRECISE" .
 
 <https://bio.tools/preciseprimer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0632,
         edam:topic_0654 ;
@@ -375438,7 +394938,7 @@ Clustering is unsupervised and exploratory in nature. Yet, it can be performed t
     sc:url "https://absynth.issb.genopole.fr/Bioinformatics/tools/PrecisePrimer/" .
 
 <https://bio.tools/precisetad> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0749,
         edam:topic_3169,
@@ -375458,7 +394958,7 @@ preciseTAD provides functions to predict the location of boundaries of topologic
     sc:url "https://bioconductor.org/packages/preciseTAD" .
 
 <https://bio.tools/precision-recal-roc-curves-generator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3474 ;
@@ -375473,7 +394973,7 @@ preciseTAD provides functions to predict the location of boundaries of topologic
     biotools:primaryContact "Stefan Schroedl" .
 
 <https://bio.tools/precisionprodb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -375495,7 +394995,7 @@ preciseTAD provides functions to predict the location of boundaries of topologic
     biotools:primaryContact "Jinchuan Xing" .
 
 <https://bio.tools/preclinical-pkpd-modeling> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3314,
@@ -375515,7 +395015,7 @@ preciseTAD provides functions to predict the location of boundaries of topologic
     biotools:primaryContact "Peter Gennemark" .
 
 <https://bio.tools/precocitydb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Script" ;
     sc:applicationSubCategory edam:topic_0602,
@@ -375540,10 +395040,10 @@ PrecocityDB is the first manually curated online database on genes, SNPs, pathwa
         edam:operation_3928 ;
     sc:license "GPL-3.0" ;
     sc:name "PrecocityDB" ;
-    sc:url "https://github.com/bic-nirrh/precocity" .
+    sc:url "http://www.precocity.bicnirrh.res.in/" .
 
 <https://bio.tools/precog> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application",
         "Web application" ;
@@ -375566,8 +395066,42 @@ PrecocityDB is the first manually curated online database on genes, SNPs, pathwa
     sc:url "http://precog.lundberg.gu.se/" ;
     biotools:primaryContact "Luciano Fernandez" .
 
+<https://bio.tools/precogx> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1026" ;
+            sc:name "Gene symbol" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2291" ;
+            sc:name "UniProt ID" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0634,
+        edam:topic_0749,
+        edam:topic_0820,
+        edam:topic_3168,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAC426>,
+        "pmcid:PMC9252787",
+        "pubmed:35639758" ;
+    sc:description "Exploring GPCR signaling mechanisms with deep protein representations." ;
+    sc:featureList edam:operation_0269,
+        edam:operation_2939,
+        edam:operation_2995,
+        edam:operation_3891 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "PRECOGx" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://precogx.bioinfolab.sns.it/" .
+
 <https://bio.tools/precrec> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0607,
@@ -375591,7 +395125,7 @@ PrecocityDB is the first manually curated online database on genes, SNPs, pathwa
     biotools:primaryContact "Takaya Saito" .
 
 <https://bio.tools/pred-gpcr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0160,
@@ -375613,14 +395147,14 @@ PrecocityDB is the first manually curated online database on genes, SNPs, pathwa
 
 <https://bio.tools/pred-lipo> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2955" ;
-            sc:name "Sequence report" ;
-            sc:sameAs "http://edamontology.org/data_2955" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2955" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Sequence report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0820 ;
@@ -375639,10 +395173,10 @@ PrecocityDB is the first manually curated online database on genes, SNPs, pathwa
 
 <https://bio.tools/pred-signal> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078 ;
     sc:citation "pubmed:18988691" ;
@@ -375660,7 +395194,7 @@ PrecocityDB is the first manually curated online database on genes, SNPs, pathwa
     biotools:primaryContact "Pantelis Bagos" .
 
 <https://bio.tools/pred-skin> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0602,
         edam:topic_2258,
@@ -375679,14 +395213,14 @@ The Pred-Skin application is based on externally predictive QSAR models of skin
 
 <https://bio.tools/pred-tat> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2955" ;
-            sc:name "Sequence report" ;
-            sc:sameAs "http://edamontology.org/data_2955" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2955" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Sequence report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0160 ;
     sc:citation "pubmed:20847219" ;
@@ -375705,7 +395239,7 @@ The Pred-Skin application is based on externally predictive QSAR models of skin
     biotools:primaryContact "Pantelis Bagos" .
 
 <https://bio.tools/pred-tmbb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0736,
@@ -375729,14 +395263,14 @@ The Pred-Skin application is based on externally predictive QSAR models of skin
 
 <https://bio.tools/pred-tmbb2> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2955" ;
-            sc:name "Sequence report" ;
-            sc:sameAs "http://edamontology.org/data_2955" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2955" ;
+            sc:encodingFormat "http://edamontology.org/format_1964" ;
+            sc:name "Sequence report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0820 ;
@@ -375756,30 +395290,30 @@ The Pred-Skin application is based on externally predictive QSAR models of skin
 
 <https://bio.tools/preda> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2012" ;
-            sc:name "Sequence coordinates" ;
-            sc:sameAs "http://edamontology.org/data_2012" ],
+            sc:additionalType "http://edamontology.org/data_3112" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "Gene expression matrix" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3112" ;
-            sc:name "Gene expression matrix" ;
-            sc:sameAs "http://edamontology.org/data_3112" ] ;
+            sc:additionalType "http://edamontology.org/data_2012" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "Sequence coordinates" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2166" ;
-            sc:name "Sequence composition plot" ;
-            sc:sameAs "http://edamontology.org/data_2166" ],
+            sc:additionalType "http://edamontology.org/data_2012" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "Sequence coordinates" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2012" ;
-            sc:name "Sequence coordinates" ;
-            sc:sameAs "http://edamontology.org/data_2012" ],
+            sc:additionalType "http://edamontology.org/data_2166" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "Sequence composition plot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1772" ;
-            sc:name "Score" ;
-            sc:sameAs "http://edamontology.org/data_1772" ],
+            sc:additionalType "http://edamontology.org/data_1288" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "Genome map" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1288" ;
-            sc:name "Genome map" ;
-            sc:sameAs "http://edamontology.org/data_1288" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1772" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "Score" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0085,
@@ -375798,8 +395332,30 @@ The Pred-Skin application is based on externally predictive QSAR models of skin
     sc:url "http://bioconductor.org/packages/release/bioc/html/PREDA.html" ;
     biotools:primaryContact "Francesco Ferrari" .
 
+<https://bio.tools/predapp> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0634,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1007/S12539-021-00484-X>,
+        "pubmed:34608613" ;
+    sc:description "PredAPP is a web server providing users an effective identification of antiparasitic peptides (APPs) ." ;
+    sc:featureList edam:operation_3432,
+        edam:operation_3659 ;
+    sc:isAccessibleForFree true ;
+    sc:name "PredAPP" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://predapp.xialab.info" .
+
 <https://bio.tools/predcid> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0203,
         edam:topic_2640,
@@ -375817,7 +395373,7 @@ The discrimination of driver from passenger mutations has been a hot topic in th
     sc:url "http://bioinfo.ahu.edu.cn:8080/PredCID" .
 
 <https://bio.tools/predcrg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0780,
         edam:topic_3053,
@@ -375838,7 +395394,7 @@ The discrimination of driver from passenger mutations has been a hot topic in th
     biotools:primaryContact <https://orcid.org/0000-0002-7098-8785> .
 
 <https://bio.tools/predcsf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2269 ;
     sc:citation <https://doi.org/10.2174/092986611794578341>,
@@ -375853,7 +395409,7 @@ The discrimination of driver from passenger mutations has been a hot topic in th
     sc:url "http://www.csbio.sjtu.edu.cn/bioinf/PredCSF/" .
 
 <https://bio.tools/preddimer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btt645>,
@@ -375869,7 +395425,7 @@ The discrimination of driver from passenger mutations has been a hot topic in th
     sc:url "http://model.nmr.ru/preddimer/" .
 
 <https://bio.tools/predector> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_0749,
@@ -375885,7 +395441,7 @@ The discrimination of driver from passenger mutations has been a hot topic in th
     sc:url "http://www.montefiore.ulg.ac.be/~hiard/PreDetector/PreDetector.php" .
 
 <https://bio.tools/predector-pathogens> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -375905,14 +395461,14 @@ The discrimination of driver from passenger mutations has been a hot topic in th
 
 <https://bio.tools/predgpi> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2974" ;
-            sc:name "Protein sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_2974" ] ;
+            sc:additionalType "http://edamontology.org/data_2974" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence (raw)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0896" ;
-            sc:name "Protein report" ;
-            sc:sameAs "http://edamontology.org/data_0896" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0896" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Protein report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0123,
         edam:topic_3542 ;
@@ -375932,7 +395488,7 @@ The discrimination of driver from passenger mutations has been a hot topic in th
         "Rita Casadio" .
 
 <https://bio.tools/predhpi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0128,
         edam:topic_3068,
@@ -375953,7 +395509,7 @@ The International Molecular Exchange Consortium (IMEX) had the initiative to clu
     sc:url "http://bioinfo.usu.edu/PredHPI/" .
 
 <https://bio.tools/predhs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0128,
@@ -375975,7 +395531,7 @@ The International Molecular Exchange Consortium (IMEX) had the initiative to clu
     biotools:primaryContact "Lei Deng" .
 
 <https://bio.tools/predhydroxy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0601,
         edam:topic_3510 ;
@@ -375991,7 +395547,7 @@ The International Molecular Exchange Consortium (IMEX) had the initiative to clu
     sc:url "http://bioinfo.ncu.edu.cn/PredHydroxy.aspx" .
 
 <https://bio.tools/predict_change_in_binding_affinity> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
@@ -376013,7 +395569,7 @@ The International Molecular Exchange Consortium (IMEX) had the initiative to clu
     sc:url "https://pandaaffinity.pythonanywhere.com/welcome/default/index#" .
 
 <https://bio.tools/predictf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0637,
         edam:topic_0749,
@@ -376034,10 +395590,10 @@ Transcription Factors (TFs) are proteins controlling the rate of genetic informa
 
 <https://bio.tools/predicthaplo> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1234" ;
-            sc:name "Sequence set (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1234" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1234" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
+            sc:name "Sequence set (nucleic acid)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196 ;
     sc:citation <https://doi.org/10.1109/TCBB.2013.145> ;
@@ -376052,7 +395608,7 @@ Transcription Factors (TFs) are proteins controlling the rate of genetic informa
     sc:url "https://github.com/cbg-ethz/PredictHaplo" .
 
 <https://bio.tools/predictionet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0602,
@@ -376076,7 +395632,7 @@ Transcription Factors (TFs) are proteins controlling the rate of genetic informa
         "Catharina Olsen" .
 
 <https://bio.tools/predictivenetworks> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0203,
@@ -376096,14 +395652,14 @@ Transcription Factors (TFs) are proteins controlling the rate of genetic informa
 
 <https://bio.tools/predictnls> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2886" ;
-            sc:name "Protein sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2886" ] ;
+            sc:additionalType "http://edamontology.org/data_2886" ;
+            sc:encodingFormat "http://edamontology.org/format_2200" ;
+            sc:name "Protein sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1276" ;
-            sc:name "Nucleic acid features" ;
-            sc:sameAs "http://edamontology.org/data_1276" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1276" ;
+            sc:encodingFormat "http://edamontology.org/format_2062" ;
+            sc:name "Nucleic acid features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -376128,7 +395684,7 @@ Transcription Factors (TFs) are proteins controlling the rate of genetic informa
     sc:url "https://www.rostlab.org/owiki/index.php/PredictNLS" .
 
 <https://bio.tools/predictor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0621,
         edam:topic_3068,
@@ -376146,7 +395702,7 @@ Advances in the development of high-throughput screening and automated chemistry
     sc:url "https://predictor.ncats.io" .
 
 <https://bio.tools/predictpa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0121,
@@ -376164,7 +395720,7 @@ Advances in the development of high-throughput screening and automated chemistry
     sc:url "http://bioinf.scmb.uq.edu.au:8080/proteinabundance/" .
 
 <https://bio.tools/predictprotein> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -376189,14 +395745,14 @@ Advances in the development of high-throughput screening and automated chemistry
 
 <https://bio.tools/predictprotein_open> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_1957" ;
+            sc:name "Protein sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0896" ;
-            sc:name "Protein report" ;
-            sc:sameAs "http://edamontology.org/data_0896" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0896" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Protein report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -376262,7 +395818,7 @@ Advances in the development of high-throughput screening and automated chemistry
     biotools:primaryContact "PredictProtein Help Desk" .
 
 <https://bio.tools/predictregulon> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0749,
@@ -376281,18 +395837,17 @@ Advances in the development of high-throughput screening and automated chemistry
 
 <https://bio.tools/predictsnp> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2974" ;
-            sc:name "Protein sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_2974" ] ;
+            sc:additionalType "http://edamontology.org/data_2974" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence (raw)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2291" ;
-            sc:name "UniProt ID" ;
-            sc:sameAs "http://edamontology.org/data_2291" ],
+            sc:additionalType "http://edamontology.org/data_2291" ;
+            sc:name "UniProt ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Protein features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
@@ -376339,21 +395894,21 @@ Advances in the development of high-throughput screening and automated chemistry
     biotools:primaryContact "PredictSNP team" .
 
 <https://bio.tools/predictsnp-onco> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "PredictSNP Onco is the web tool for fully automated and fast analysis of the effect of mutations on stability and function in known cancer targets applying in silico methods of molecular modelling and bioinformatics." ;
     sc:name "PredictSNP-ONCO" ;
     sc:url "https://loschmidt.chemi.muni.cz/predictsnp-onco/" .
 
 <https://bio.tools/predictsnp2> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ] ;
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence variations" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence variations" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_2533,
@@ -376398,7 +395953,7 @@ Advances in the development of high-throughput screening and automated chemistry
     biotools:primaryContact "PredictSNP team" .
 
 <https://bio.tools/predikin> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -376418,7 +395973,7 @@ Advances in the development of high-throughput screening and automated chemistry
     biotools:primaryContact "Contact Form" .
 
 <https://bio.tools/predisi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0140,
@@ -376436,8 +395991,20 @@ Advances in the development of high-throughput screening and automated chemistry
     sc:url "http://www.predisi.de/" ;
     biotools:primaryContact "Karsten Hiller" .
 
+<https://bio.tools/predisorder> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:citation <https://doi.org/10.1186/1471-2105-10-436>,
+        "pmcid:PMC3087350",
+        "pubmed:20025768" ;
+    sc:description "PreDisorder server is a valuable and accurate tool for protein structure prediction, protein determination and protein engineering." ;
+    sc:name "PreDisorder" ;
+    sc:operatingSystem "Linux" ;
+    sc:softwareVersion "1.1" ;
+    sc:url "http://casp.rnet.missouri.edu/predisorder.html" .
+
 <https://bio.tools/preditor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -376459,10 +396026,10 @@ Advances in the development of high-throughput screening and automated chemistry
 
 <https://bio.tools/predml-site> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -376481,14 +396048,12 @@ Advances in the development of high-throughput screening and automated chemistry
 
 <https://bio.tools/predms> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2301" ;
-            sc:name "SMILES string" ;
-            sc:sameAs "http://edamontology.org/data_2301" ],
+            sc:additionalType "http://edamontology.org/data_1712" ;
+            sc:name "Chemical structure image" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1712" ;
-            sc:name "Chemical structure image" ;
-            sc:sameAs "http://edamontology.org/data_1712" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2301" ;
+            sc:name "SMILES string" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3336,
@@ -376509,7 +396074,7 @@ Advances in the development of high-throughput screening and automated chemistry
     sc:url "https://predms.netlify.app" .
 
 <https://bio.tools/predneurop> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3400,
         edam:topic_3407,
@@ -376524,7 +396089,7 @@ Advances in the development of high-throughput screening and automated chemistry
     sc:url "https://github.com/xialab-ahu/PredNeuroP" .
 
 <https://bio.tools/prednts> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0160,
@@ -376545,7 +396110,7 @@ Advances in the development of high-throughput screening and automated chemistry
     biotools:primaryContact <https://orcid.org/0000-0003-4254-2214> .
 
 <https://bio.tools/predphogly-site> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -376569,7 +396134,7 @@ Advances in the development of high-throughput screening and automated chemistry
     biotools:primaryContact <https://orcid.org/0000-0002-4830-0657> .
 
 <https://bio.tools/predrbr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0128 ;
@@ -376583,7 +396148,7 @@ Advances in the development of high-throughput screening and automated chemistry
     biotools:primaryContact "Lei Deng" .
 
 <https://bio.tools/predrem> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0166,
         edam:topic_0749,
@@ -376604,14 +396169,14 @@ Advances in the development of high-throughput screening and automated chemistry
 
 <https://bio.tools/predtm> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_2200" ;
+            sc:name "Protein sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2955" ;
-            sc:name "Sequence report" ;
-            sc:sameAs "http://edamontology.org/data_2955" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2955" ;
+            sc:encodingFormat "http://edamontology.org/format_1964" ;
+            sc:name "Sequence report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082 ;
     sc:citation <https://doi.org/10.1371/journal.pone.0038967>,
@@ -376629,7 +396194,7 @@ Advances in the development of high-throughput screening and automated chemistry
     biotools:primaryContact "Marjana Novič" .
 
 <https://bio.tools/predus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -376651,7 +396216,7 @@ Advances in the development of high-throughput screening and automated chemistry
     biotools:primaryContact "Support" .
 
 <https://bio.tools/predyflexy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0123 ;
@@ -376669,14 +396234,12 @@ Advances in the development of high-throughput screening and automated chemistry
 
 <https://bio.tools/preg> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1352" ;
-            sc:name "Regular expression" ;
-            sc:sameAs "http://edamontology.org/data_1352" ],
+            sc:additionalType "http://edamontology.org/data_1352" ;
+            sc:name "Regular expression" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2886" ;
-            sc:name "Protein sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2886" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2886" ;
+            sc:name "Protein sequence record" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0160 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -376707,7 +396270,7 @@ Advances in the development of high-throughput screening and automated chemistry
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/preg.html" .
 
 <https://bio.tools/prehots> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0593,
         edam:topic_0736,
@@ -376728,7 +396291,7 @@ PreHots, a computational method that can effectively identify hot spots on prote
     sc:url "https://dmb.tongji.edu.cn/tools/PreHots/" .
 
 <https://bio.tools/prelude_fugue> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2814 ;
     sc:citation "pubmed:16682423" ;
@@ -376743,7 +396306,7 @@ PreHots, a computational method that can effectively identify hot spots on prote
     sc:url "http://babylone.ulb.ac.be/Prelude_and_Fugue/" .
 
 <https://bio.tools/premedkb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0208,
         edam:topic_0634,
@@ -376764,7 +396327,7 @@ One important aspect of precision medicine aims to deliver the right medicine to
     sc:url "http://www.fudan-pgx.org/premedkb/index.html#/home" .
 
 <https://bio.tools/premer-cg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3511 ;
@@ -376779,7 +396342,7 @@ One important aspect of precision medicine aims to deliver the right medicine to
     sc:url "http://bioserv.mps.ohio-state.edu/premer/" .
 
 <https://bio.tools/premeta> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_3174,
@@ -376798,7 +396361,7 @@ One important aspect of precision medicine aims to deliver the right medicine to
     biotools:primaryContact "Zheng-Zheng Tang" .
 
 <https://bio.tools/premetabo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0821,
         edam:topic_2275,
@@ -376820,8 +396383,24 @@ CYP 3A4, 1A2, 2C9, 2D6 Site of Metabolism (SOM) prediction.""" ;
     sc:name "PreMetabo" ;
     sc:url "https://premetabo.bmdrc.kr/" .
 
+<https://bio.tools/premier> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:citation <https://doi.org/10.1371/journal.pone.0024039>,
+        "pmcid:PMC3172211",
+        "pubmed:21931639" ;
+    sc:description "PreMieR is a web-server specially trained for the identification of mannose interacting residues (MIRs)." ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "premier" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/premier/> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/premier/" .
+
 <https://bio.tools/premnas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -376841,7 +396420,7 @@ CYP 3A4, 1A2, 2C9, 2D6 Site of Metabolism (SOM) prediction.""" ;
     sc:url "https://github.com/jhhung/Premnas" .
 
 <https://bio.tools/prempli> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0130,
@@ -376860,7 +396439,7 @@ CYP 3A4, 1A2, 2C9, 2D6 Site of Metabolism (SOM) prediction.""" ;
     biotools:primaryContact "Minghui Li" .
 
 <https://bio.tools/prempri> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0128,
         edam:topic_0130,
@@ -376879,7 +396458,7 @@ PremPRI predicts the effects of single muta-tions occurring in RNA binding prote
     sc:url "http://lilab.jysw.suda.edu.cn/research/PremPRI/" .
 
 <https://bio.tools/premps> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0130,
         edam:topic_0199,
         edam:topic_0736 ;
@@ -376892,7 +396471,7 @@ PremPRI predicts the effects of single muta-tions occurring in RNA binding prote
     sc:url "https://lilab.jysw.suda.edu.cn/research/PremPS/" .
 
 <https://bio.tools/preopdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0114,
         edam:topic_0602,
@@ -376915,7 +396494,7 @@ PremPRI predicts the effects of single muta-tions occurring in RNA binding prote
         "Enrique Merino" .
 
 <https://bio.tools/prep> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0203 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btg318> ;
@@ -376929,7 +396508,7 @@ PremPRI predicts the effects of single muta-tions occurring in RNA binding prote
     sc:url "http://chirimoyo.ac.uma.es/prep/index.html" .
 
 <https://bio.tools/prep_suite> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0097,
@@ -376952,14 +396531,14 @@ PremPRI predicts the effects of single muta-tions occurring in RNA binding prote
 
 <https://bio.tools/prepareannotation> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2305" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1975" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0622 ;
@@ -376979,7 +396558,7 @@ PremPRI predicts the effects of single muta-tions occurring in RNA binding prote
     biotools:primaryContact "Galaxy Support Team" .
 
 <https://bio.tools/prephappy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3053 ;
     sc:description "Prephappy is a tool to help prepare input files for the haplotype reconstruction program HAPPY." ;
@@ -376993,7 +396572,7 @@ PremPRI predicts the effects of single muta-tions occurring in RNA binding prote
     sc:url "http://valdarlab.unc.edu/prephappy.html" .
 
 <https://bio.tools/preppi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0602,
@@ -377009,7 +396588,7 @@ PremPRI predicts the effects of single muta-tions occurring in RNA binding prote
     sc:url "http://bhapp.c2b2.columbia.edu/PrePPI/" .
 
 <https://bio.tools/preppitar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2259,
@@ -377024,47 +396603,8 @@ PremPRI predicts the effects of single muta-tions occurring in RNA binding prote
     sc:softwareHelp <http://doc.aporc.org/wiki/PrePPItar> ;
     sc:url "http://doc.aporc.org/wiki/PrePPItar" .
 
-<https://bio.tools/preprint_reports_improvements> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0154,
-        edam:topic_2229,
-        edam:topic_3172,
-        edam:topic_3301,
-        edam:topic_3407 ;
-    sc:citation <https://doi.org/10.7287/PEERJ.PREPRINTS.117V5> ;
-    sc:description """Development of a semi-defined medium for high cell density cultivation of Escherichia coli in shake flasks.
-
-Sufficient quantities of cells of consistent characteristics are needed for studying biologicalprocesses (at the population level ) in many areas of applied microbiology.
-
-We've disabled social media & analytics cookies unless you decide to allow them or signup.
-
-Get ready.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'Development semi-defined medium high cell density cultivation Escherichia coli shake flasks', 'cultivation', '600nm', 'diauxic'""" ;
-    sc:featureList edam:operation_3431,
-        edam:operation_3454 ;
-    sc:name "preprint reports improvements" ;
-    sc:url "https://peerj.com/preprints/115/" .
-
-<https://bio.tools/preprints> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0621,
-        edam:topic_2229,
-        edam:topic_3168,
-        edam:topic_3292,
-        edam:topic_3301 ;
-    sc:citation <https://doi.org/10.7287/PEERJ.PREPRINTS.115V5> ;
-    sc:description """Development of a semi-defined medium for high cell density cultivation of Escherichia coli in shake flasks.
-
-The characteristics of the culture vessel determine, to a large extent, the type of growth medium suitable for use.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'Development semi-defined medium high cell density cultivation Escherichia coli shake flasks', '600nm', 'FM', 'TSB'""" ;
-    sc:featureList edam:operation_0399,
-        edam:operation_3283,
-        edam:operation_3454 ;
-    sc:name "preprints" ;
-    sc:url "https://peerj.com/preprints/117/" .
-
 <https://bio.tools/preprocesscore> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3071,
@@ -377083,7 +396623,7 @@ The characteristics of the culture vessel determine, to a large extent, the type
     biotools:primaryContact "Benjamin Milo Bolstad" .
 
 <https://bio.tools/prer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0128,
         edam:topic_0203,
@@ -377101,8 +396641,53 @@ Alterations in protein and gene expression levels are often used as features to
     sc:name "PRER" ;
     sc:url "https://github.com/hikuru/PRER" .
 
+<https://bio.tools/pres> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0602,
+        edam:topic_0659,
+        edam:topic_3170,
+        edam:topic_3320,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.1093/BIB/BBAC242>,
+        "pubmed:35722704" ;
+    sc:description "A webserver for decoding the functional perturbations of RNA editing sites." ;
+    sc:featureList edam:operation_0278,
+        edam:operation_0314,
+        edam:operation_0463,
+        edam:operation_3096 ;
+    sc:isAccessibleForFree true ;
+    sc:name "PRES" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://bio-bigdata.hrbmu.edu.cn/PRES/" .
+
+<https://bio.tools/pres_md> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1463" ;
+            sc:name "Small molecule structure" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2301" ;
+            sc:name "SMILES string" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_3474,
+        edam:topic_3500 ;
+    sc:citation <https://doi.org/10.1093/TOXSCI/KFAC078>,
+        "pubmed:35916740" ;
+    sc:description "Predictor of Sensitization hazard for chemical substances released from Medical Devices." ;
+    sc:featureList edam:operation_2423 ;
+    sc:isAccessibleForFree true ;
+    sc:name "PreS MD" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://presmd.mml.unc.edu/" .
+
 <https://bio.tools/presa2i> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0160,
         edam:topic_3170 ;
@@ -377127,22 +396712,22 @@ Insert RNA string of any length.""" ;
 
 <https://bio.tools/presartools> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2333" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3071,
@@ -377161,7 +396746,7 @@ Insert RNA string of any length.""" ;
     biotools:primaryContact "Galaxy Support Team" .
 
 <https://bio.tools/prescient> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0621,
@@ -377182,7 +396767,7 @@ Insert RNA string of any length.""" ;
     sc:url "https://github.com/gifford-lab/prescient" .
 
 <https://bio.tools/preselector> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0821,
@@ -377201,7 +396786,7 @@ Insert RNA string of any length.""" ;
         <https://orcid.org/0000-0002-4330-0754> .
 
 <https://bio.tools/preseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0654,
@@ -377217,7 +396802,7 @@ Insert RNA string of any length.""" ;
     sc:url "http://smithlabresearch.org/software/preseq/" .
 
 <https://bio.tools/presrat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0659,
         edam:topic_3125,
@@ -377241,7 +396826,7 @@ Bacterial small-RNAs (sRNA) are RNAs of varied length (40 to 500 nucleotide long
     sc:url "http://www.hpppi.iicb.res.in/presrat" .
 
 <https://bio.tools/press> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_2269 ;
     sc:citation <https://doi.org/10.1142/S0219720012420073> ;
@@ -377257,7 +396842,7 @@ Bacterial small-RNAs (sRNA) are RNAs of varied length (40 to 500 nucleotide long
     sc:url "http://orion.math.iastate.edu/press/presspage/P.R.E.S.S..html" .
 
 <https://bio.tools/presto> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_0804,
@@ -377274,7 +396859,7 @@ Bacterial small-RNAs (sRNA) are RNAs of varied length (40 to 500 nucleotide long
     sc:url "http://presto.readthedocs.io/en/latest/" .
 
 <https://bio.tools/pretextview> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0102 ;
     sc:description "Pretext is an OpenGL-powered pretext contact map viewer." ;
@@ -377290,7 +396875,7 @@ Bacterial small-RNAs (sRNA) are RNAs of varied length (40 to 500 nucleotide long
     biotools:primaryContact "Ed Harry" .
 
 <https://bio.tools/pretimeth> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0654,
         edam:topic_3295,
@@ -377309,10 +396894,10 @@ Bacterial small-RNAs (sRNA) are RNAs of varied length (40 to 500 nucleotide long
 
 <https://bio.tools/pretp-el> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3374,
@@ -377331,20 +396916,33 @@ Bacterial small-RNAs (sRNA) are RNAs of varied length (40 to 500 nucleotide long
         "Windows" ;
     sc:url "http://bliulab.net/PreTP-EL" .
 
+<https://bio.tools/pretp-stack> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_3373,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1109/TCBB.2022.3183018>,
+        "pubmed:35700248" ;
+    sc:description "Prediction of therapeutic peptide based on the stacked ensemble learning." ;
+    sc:isAccessibleForFree true ;
+    sc:name "PreTP-Stack" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://bliulab.net/PreTP-Stack" .
+
 <https://bio.tools/prettyplot> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0874" ;
-            sc:name "Comparison matrix" ;
-            sc:sameAs "http://edamontology.org/data_0874" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:name "Sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
+            sc:additionalType "http://edamontology.org/data_0874" ;
+            sc:name "Comparison matrix" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1711" ;
-            sc:name "Sequence alignment image" ;
-            sc:sameAs "http://edamontology.org/data_1711" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1711" ;
+            sc:name "Sequence alignment image" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0097 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -377375,7 +396973,7 @@ Bacterial small-RNAs (sRNA) are RNAs of varied length (40 to 500 nucleotide long
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/prettyplot.html" .
 
 <https://bio.tools/prettyplot_ws_husar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:description "Reads in a set of aligned DNA or protein sequences. It displays them graphically, with conserved regions highlighted in various ways." ;
@@ -377390,14 +396988,12 @@ Bacterial small-RNAs (sRNA) are RNAs of varied length (40 to 500 nucleotide long
 
 <https://bio.tools/prettyseq> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1276" ;
-            sc:name "Nucleic acid features" ;
-            sc:sameAs "http://edamontology.org/data_1276" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1276" ;
+            sc:name "Nucleic acid features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -377428,7 +397024,7 @@ Bacterial small-RNAs (sRNA) are RNAs of varied length (40 to 500 nucleotide long
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/prettyseq.html" .
 
 <https://bio.tools/prevalence> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0625,
         edam:topic_2640 ;
@@ -377448,38 +397044,8 @@ Select which updates you would like to receive""" ;
     sc:name "Prevalence tool" ;
     sc:url "https://www.ambrygen.com/prevalence-tool" .
 
-<https://bio.tools/prevalence_tool> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0199,
-        edam:topic_0625,
-        edam:topic_2640 ;
-    sc:citation <https://doi.org/10.1101/19011981> ;
-    sc:description """Mutation prevalence tables for hereditary cancer derived from multi-gene panel testing.
-
-Interactive Prevalence Tables From Multi-Gene Panel Testing.
-
-This website describes basic, aggregated and deidentified clinical and genotype data from patients referred for hereditary cancer multigene panel testing to Ambry Genetics from March 2012 through December 2016. Data were compiled, normalized, and visualized in collaboration from researchers at the Mayo Clinic. The collaborations between Mayo Clinic And Ambry Genetics should not be seen as an endorsement of any company or product.
-
-Please Enter Your Information to Continue.
-
-Select which updates you would like to receive""" ;
-    sc:featureList edam:operation_3196,
-        edam:operation_3202,
-        edam:operation_3436 ;
-    sc:name "prevalence tool" ;
-    sc:url "https://www.ambrygen.com/prevalence-tool" .
-
-<https://bio.tools/prevention> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3399,
-        edam:topic_3407,
-        edam:topic_3411 ;
-    sc:citation <https://doi.org/10.1101/758805> ;
-    sc:description "> VERY_LOW CONFIDENCE! | > CORRECT NAME OF TOOL COULD ALSO BE 'menstrual HbA1c', 'HbA1c', 'menstrual', 'prediabetes' | Population-scale prediabetic assessment using HbA1c from menstrual blood | CDC-recommended diabetes prevention programs aim to detect and reverse disease in the one-third of Americans with prediabetes, but high-compliance serial assessment of percent hemoglobin A1c (HbA1c) remains a barrier to delivering this vision at population scale. Venous phlebotomy is challenging for busy or resource-constrained patients. In this paper, we introduce the first-ever quantitative diagnostic test based on menstrual fluid, which allows HbA1c quantification from self-collected mailed tampons. We demonstrate that menstrual HbA1c is comparable to venous HbA1c in the diagnosis of prediabetes with the standard threshold of 5.7. We also demonstrate accuracy, precision, stability, and interference testing" ;
-    sc:featureList edam:operation_3799 ;
-    sc:name "prevention" ;
-    sc:url "https://www.cdc.gov/diabetes/prevention/pdf/" .
-
 <https://bio.tools/prewas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2885,
         edam:topic_3068,
         edam:topic_3293,
@@ -377499,7 +397065,7 @@ The prewas R package allows users to create a binary SNP matrix from a whole gen
     sc:url "https://github.com/Snitkin-Lab-Umich/prewas_manuscript_analysis" .
 
 <https://bio.tools/prex> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0621,
@@ -377517,7 +397083,7 @@ The prewas R package allows users to create a binary SNP matrix from a whole gen
     biotools:primaryContact "Poole Group" .
 
 <https://bio.tools/prgdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0634,
@@ -377539,7 +397105,7 @@ The prewas R package allows users to create a binary SNP matrix from a whole gen
     biotools:primaryContact "Contact Form" .
 
 <https://bio.tools/prgefne> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0634,
         edam:topic_3047 ;
@@ -377555,7 +397121,7 @@ Description: Identifying disease-related genes is of importance for understandin
     sc:url "http://bioinformatics.csu.edu.cn/prgefne/" .
 
 <https://bio.tools/pri-cat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_0780,
@@ -377570,7 +397136,7 @@ Description: Identifying disease-related genes is of importance for understandin
     biotools:primaryContact "Jens Allmer" .
 
 <https://bio.tools/priam_search> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Database portal",
         "Web application" ;
@@ -377592,7 +397158,7 @@ Description: Identifying disease-related genes is of importance for understandin
     sc:url "http://priam.prabi.fr/REL_MAR15/index_mar15.html" .
 
 <https://bio.tools/price> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0196 ;
@@ -377608,14 +397174,14 @@ Description: Identifying disease-related genes is of importance for understandin
 
 <https://bio.tools/price-orf> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2975" ;
-            sc:name "Nucleic acid sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_2975" ] ;
+            sc:additionalType "http://edamontology.org/data_2975" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Nucleic acid sequence (raw)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_3617" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3125,
@@ -377633,7 +397199,7 @@ Description: Identifying disease-related genes is of importance for understandin
     biotools:primaryContact "Florian Erhard" .
 
 <https://bio.tools/pridb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0128,
@@ -377654,22 +397220,20 @@ Description: Identifying disease-related genes is of importance for understandin
 
 <https://bio.tools/pride> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1145" ;
-            sc:name "PRIDE experiment accession number" ;
-            sc:sameAs "http://edamontology.org/data_1145" ],
+            sc:additionalType "http://edamontology.org/data_3021" ;
+            sc:name "UniProt accession" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3021" ;
-            sc:name "UniProt accession" ;
-            sc:sameAs "http://edamontology.org/data_3021" ] ;
+            sc:additionalType "http://edamontology.org/data_1145" ;
+            sc:name "PRIDE experiment accession number" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ],
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Peptide identification" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Mass spectrometry data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0121,
@@ -377691,14 +397255,12 @@ Description: Identifying disease-related genes is of importance for understandin
 
 <https://bio.tools/pride-asa-pipeline> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ] ;
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:name "Mass spectrometry data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2886" ;
-            sc:name "Protein sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2886" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2886" ;
+            sc:name "Protein sequence record" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0121 ;
@@ -377714,7 +397276,7 @@ Description: Identifying disease-related genes is of importance for understandin
     sc:url "https://github.com/compomics/pride-asa-pipeline" .
 
 <https://bio.tools/pride_converter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3071,
         edam:topic_3520 ;
@@ -377731,14 +397293,14 @@ Description: Identifying disease-related genes is of importance for understandin
 
 <https://bio.tools/pride_toolsuite> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3244" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
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-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Suite" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -377754,7 +397316,7 @@ Description: Identifying disease-related genes is of importance for understandin
     sc:url "https://github.com/PRIDE-Toolsuite" .
 
 <https://bio.tools/prider> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0632,
@@ -377773,8 +397335,32 @@ Description: Identifying disease-related genes is of importance for understandin
         "Windows" ;
     sc:url "https://github.com/manutamminen/prider" .
 
+<https://bio.tools/priesstess> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0097,
+        edam:topic_0099,
+        edam:topic_0160,
+        edam:topic_0166,
+        edam:topic_3542 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAC694>,
+        "pubmed:36018788" ;
+    sc:description "Interpretable, high-performing models of the sequence and structure preferences of RNA-binding proteins." ;
+    sc:featureList edam:operation_0239,
+        edam:operation_0502,
+        edam:operation_0570,
+        edam:operation_2488,
+        edam:operation_3901 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "PRIESSTESS" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/kaitlin309/PRIESSTESS" .
+
 <https://bio.tools/prifi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0632,
@@ -377795,7 +397381,7 @@ Description: Identifying disease-related genes is of importance for understandin
     biotools:primaryContact "Jakob Fredslund" .
 
 <https://bio.tools/primaclade> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0632,
@@ -377817,19 +397403,7 @@ Description: Identifying disease-related genes is of importance for understandin
     biotools:primaryContact "Michael D. Gadberry" .
 
 <https://bio.tools/primaryAnnotation> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
-    sc:applicationSubCategory edam:topic_0602,
-        edam:topic_0749,
-        edam:topic_3512 ;
-    sc:citation <https://doi.org/10.1101/779587> ;
-    sc:description "Defining data-driven primary transcript annotations with primaryTranscriptAnnotation in R | This package was developed for two purposes: (1) to generate data-driven transcript annotations based on nascent transcript sequencing data, and (2) to annotate de novo identified transcriptional units (e.g., genes and enhancers) based on existing annotations such as those from (1). The code for this package was employed in analyses underlying our manuscript in preparation: Transcriptional mechanisms and gene regulatory networks underlying early adipogenesis (this note will be updated upon publication) | primaryTranscriptAnnotation-vignette.pdf | See the vignette and user manual:" ;
-    sc:featureList edam:operation_0441,
-        edam:operation_2495,
-        edam:operation_3644 ;
-    sc:name "primaryTranscriptAnnotation" ;
-    sc:url "https://github.com/WarrenDavidAnderson/genomicsRpackage/tree/master/primaryTranscriptAnnotation" .
-
-<https://bio.tools/primaryTranscriptAnnotation> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0749,
         edam:topic_3512 ;
@@ -377842,7 +397416,7 @@ Description: Identifying disease-related genes is of importance for understandin
     sc:url "https://github.com/WarrenDavidAnderson/genomicsRpackage/tree/master/primaryTranscriptAnnotation" .
 
 <https://bio.tools/prime> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3293 ;
@@ -377856,7 +397430,7 @@ Description: Identifying disease-related genes is of importance for understandin
     sc:url "http://prime.scilifelab.se/" .
 
 <https://bio.tools/prime-rna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_2229,
         edam:topic_3170,
@@ -377874,7 +397448,7 @@ Single cell RNA sequencing enables to obtain a transcriptome profiles for an ind
     sc:url "https://github.com/hyundoo/PRIME" .
 
 <https://bio.tools/primedesign> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0199,
         edam:topic_0632,
@@ -377888,8 +397462,29 @@ Single cell RNA sequencing enables to obtain a transcriptome profiles for an ind
     sc:name "PrimeDesign" ;
     sc:url "http://primedesign.pinellolab.org/" .
 
+<https://bio.tools/primekg> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0602,
+        edam:topic_0625,
+        edam:topic_0634,
+        edam:topic_3423,
+        edam:topic_3577 ;
+    sc:citation <https://doi.org/10.1101/2022.05.01.489928> ;
+    sc:description "Building a knowledge graph to enable precision medicine." ;
+    sc:featureList edam:operation_2422,
+        edam:operation_3196,
+        edam:operation_3431 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "PrimeKG" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://zitniklab.hms.harvard.edu/projects/PrimeKG" .
+
 <https://bio.tools/primer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0099,
@@ -377906,7 +397501,7 @@ Single cell RNA sequencing enables to obtain a transcriptome profiles for an ind
     sc:url "http://bclab.inha.ac.kr/primer/" .
 
 <https://bio.tools/primer-design-gui> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0632 ;
@@ -377923,14 +397518,12 @@ Single cell RNA sequencing enables to obtain a transcriptome profiles for an ind
 
 <https://bio.tools/primer3> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ] ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:name "Nucleic acid sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1240" ;
-            sc:name "PCR primers" ;
-            sc:sameAs "http://edamontology.org/data_1240" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1240" ;
+            sc:name "PCR primers" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0632 ;
     sc:citation <https://doi.org/10.1093/nar/gks596> ;
@@ -377947,7 +397540,7 @@ Single cell RNA sequencing enables to obtain a transcriptome profiles for an ind
     biotools:primaryContact "Triinu Kõressaar" .
 
 <https://bio.tools/primer3_masker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0632,
@@ -377963,7 +397556,7 @@ Single cell RNA sequencing enables to obtain a transcriptome profiles for an ind
     biotools:primaryContact "Maido Remm" .
 
 <https://bio.tools/primer3plus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0632,
         edam:topic_0749,
@@ -377984,7 +397577,7 @@ Single cell RNA sequencing enables to obtain a transcriptome profiles for an ind
     biotools:primaryContact "Untergasser A." .
 
 <https://bio.tools/primer_z> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0632,
         edam:topic_0749,
@@ -378001,7 +397594,7 @@ Single cell RNA sequencing enables to obtain a transcriptome profiles for an ind
     sc:url "http://grch37.genepipe.ncgm.sinica.edu.tw/primerz/beginDesign.do" .
 
 <https://bio.tools/primerbank> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0632,
@@ -378024,13 +397617,13 @@ Single cell RNA sequencing enables to obtain a transcriptome profiles for an ind
     biotools:primaryContact "PrimerBank Support" .
 
 <https://bio.tools/primerclip> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "Primerclip™ is an alignment-based primer trimming tool designed to trim primer sequences for Swift Biosciences Accel-Amplicon™ panels. The motivation for designing an alignment-based primer trimming tool to increase speed. Primerclip uses an algorithm based on genomic intervals of the aligned reads rather than the sequence matching approach necessarily used by most trimming tools to trim adapter sequences. Trimming based on alignment position allows primerclip to run in significantly less time than sequence-based trim tools, particularly as the size of the targeted panel increases." ;
     sc:name "primerclip" ;
     sc:url "https://github.com/swiftbiosciences/primerclip" .
 
 <https://bio.tools/primerdesign-m> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0632,
@@ -378048,7 +397641,7 @@ Single cell RNA sequencing enables to obtain a transcriptome profiles for an ind
     sc:url "http://www.hiv.lanl.gov/content/sequence/PRIMER_DESIGN/primer_design.html" .
 
 <https://bio.tools/primerize> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0099,
@@ -378068,7 +397661,7 @@ Single cell RNA sequencing enables to obtain a transcriptome profiles for an ind
     sc:url "http://primerize.stanford.edu/" .
 
 <https://bio.tools/primerize-2d> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0102,
@@ -378084,29 +397677,8 @@ Single cell RNA sequencing enables to obtain a transcriptome profiles for an ind
     sc:url "https://primerize.stanford.edu/primerize2d/" ;
     biotools:primaryContact "Rhiju Das" .
 
-<https://bio.tools/primers> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0621,
-        edam:topic_0632,
-        edam:topic_3050,
-        edam:topic_3168,
-        edam:topic_3573 ;
-    sc:citation <https://doi.org/10.7287/PEERJ.PREPRINTS.2044V3> ;
-    sc:description """Validation and development of freshwater invertebrate metabarcoding COI primers for Environmental Impact Assessment.
-
-To assess and manage human impacts on freshwater ecosystems is a central challenge in the present era of biodiversity loss. Macroinvertebrates are an ideal group for Environmental Impacts Assessment (EIA). However, generating accurate macroinvertebrate inventories is difficult and error-prone based on larval morphology. Here, DNA metabarcoding provides new opportunities. Its potential to accurately identify bulk invertebrates on species level has been demonstrated in several case studies. However, DNA based identification is often limited by primer bias, potentially leading to taxa in the sample remaining undetected. Thus, the success of DNA metabarcoding as an emerging technique for EIA critically relies on carefully evaluated primers.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'metabarcoding', 'PrimerMiner', 'mock'""" ;
-    sc:featureList edam:operation_0308,
-        edam:operation_3192,
-        edam:operation_3200,
-        edam:operation_3237 ;
-    sc:name "primers" ;
-    sc:url "https://doi.org/10.7287/PEERJ.PREPRINTS.2044V3" .
-
 <https://bio.tools/primers4clades> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0632,
@@ -378129,18 +397701,15 @@ To assess and manage human impacts on freshwater ecosystems is a central challen
 
 <https://bio.tools/primersearch> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2887" ;
-            sc:name "Nucleic acid sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2887" ],
+            sc:additionalType "http://edamontology.org/data_2887" ;
+            sc:name "Nucleic acid sequence record" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0850" ;
-            sc:name "Sequence set" ;
-            sc:sameAs "http://edamontology.org/data_0850" ] ;
+            sc:additionalType "http://edamontology.org/data_0850" ;
+            sc:name "Sequence set" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1276" ;
-            sc:name "Nucleic acid features" ;
-            sc:sameAs "http://edamontology.org/data_1276" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1276" ;
+            sc:name "Nucleic acid features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -378170,7 +397739,7 @@ To assess and manage human impacts on freshwater ecosystems is a central challen
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/primersearch.html" .
 
 <https://bio.tools/primerselect> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0632,
         edam:topic_0634,
@@ -378186,7 +397755,7 @@ To assess and manage human impacts on freshwater ecosystems is a central challen
     sc:url "http://www.gis.a-star.edu.sg/pathchip/" .
 
 <https://bio.tools/primerseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0632,
@@ -378205,7 +397774,7 @@ To assess and manage human impacts on freshwater ecosystems is a central challen
     sc:url "http://primerseq.sourceforge.net/" .
 
 <https://bio.tools/primerstation> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0632,
@@ -378227,7 +397796,7 @@ To assess and manage human impacts on freshwater ecosystems is a central challen
     biotools:primaryContact "Tomoyuki Yamada" .
 
 <https://bio.tools/primersuite> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0632,
         edam:topic_3511,
@@ -378246,7 +397815,7 @@ To assess and manage human impacts on freshwater ecosystems is a central challen
     biotools:primaryContact "Jennifer Lu" .
 
 <https://bio.tools/primerxl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0632,
         edam:topic_3168 ;
@@ -378265,14 +397834,12 @@ To assess and manage human impacts on freshwater ecosystems is a central challen
 
 <https://bio.tools/primetv> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0872" ;
-            sc:name "Phylogenetic tree" ;
-            sc:sameAs "http://edamontology.org/data_0872" ] ;
+            sc:additionalType "http://edamontology.org/data_0872" ;
+            sc:name "Phylogenetic tree" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0872" ;
-            sc:name "Phylogenetic tree" ;
-            sc:sameAs "http://edamontology.org/data_0872" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0872" ;
+            sc:name "Phylogenetic tree" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0092 ;
     sc:citation <https://doi.org/10.1186/1471-2105-8-148> ;
@@ -378288,7 +397855,7 @@ To assess and manage human impacts on freshwater ecosystems is a central challen
     sc:url "http://prime.sbc.su.se/primetv/" .
 
 <https://bio.tools/primirtss> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0659,
         edam:topic_3169,
@@ -378316,7 +397883,7 @@ GeneRegulation, Genetics, ImmunoOncology, Preprocessing, RNASeq, Sequencing, Sof
     sc:url "http://bioconductor.org/packages/primirTSS" .
 
 <https://bio.tools/primo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0081,
@@ -378335,7 +397902,7 @@ GeneRegulation, Genetics, ImmunoOncology, Preprocessing, RNASeq, Sequencing, Sof
     biotools:primaryContact "Özlem Tastan Bishop" .
 
 <https://bio.tools/primo-multiomics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0625,
         edam:topic_2885,
@@ -378356,7 +397923,7 @@ The goal of Primo is to provide computationally efficient tools to integrate dat
     sc:url "https://github.com/kjgleason/Primo" .
 
 <https://bio.tools/primor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -378375,7 +397942,7 @@ The goal of Primo is to provide computationally efficient tools to integrate dat
     biotools:primaryContact "Juan Felipe Pérez Juste Abascal" .
 
 <https://bio.tools/primordia> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0821,
         edam:topic_3314,
@@ -378392,7 +397959,7 @@ PRIMoRDiA ( PRIMoRDiA Macromolecular Reactivity Descriptors Access ) is a shared
     sc:url "https://github.com/igorChem/PRIMoRDiA1.0v" .
 
 <https://bio.tools/primus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3053 ;
@@ -378405,7 +397972,7 @@ PRIMoRDiA ( PRIMoRDiA Macromolecular Reactivity Descriptors Access ) is a shared
     sc:url "https://primus.gs.washington.edu/" .
 
 <https://bio.tools/princces> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0078,
@@ -378422,7 +397989,7 @@ PRIMoRDiA ( PRIMoRDiA Macromolecular Reactivity Descriptors Access ) is a shared
     sc:url "http://scholar.semmelweis.hu/czirjakgabor/s/princces/#t1" .
 
 <https://bio.tools/prince> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0099,
@@ -378440,7 +398007,7 @@ PRIMoRDiA ( PRIMoRDiA Macromolecular Reactivity Descriptors Access ) is a shared
     biotools:primaryContact "Dr.Ranjit Prasad Bahadur" .
 
 <https://bio.tools/prince-pp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -378464,10 +398031,10 @@ PrInCE is a computational approach to infer protein-protein interaction networks
 
 <https://bio.tools/princess_snv> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2885,
         edam:topic_3175,
@@ -378492,7 +398059,7 @@ PrInCE is a computational approach to infer protein-protein interaction networks
     sc:url "https://github.com/MeHelmy/princess" .
 
 <https://bio.tools/princeton_tigress> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0130,
@@ -378510,7 +398077,7 @@ PrInCE is a computational approach to infer protein-protein interaction networks
     biotools:primaryContact "Christodoulos A. Floudas" .
 
 <https://bio.tools/prinseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3174,
@@ -378531,14 +398098,13 @@ PrInCE is a computational approach to infer protein-protein interaction networks
 
 <https://bio.tools/prints> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1137" ;
-            sc:name "PRINTS code" ;
-            sc:sameAs "http://edamontology.org/data_1137" ] ;
+            sc:additionalType "http://edamontology.org/data_1137" ;
+            sc:name "PRINTS code" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1355" ;
-            sc:name "Protein signature" ;
-            sc:sameAs "http://edamontology.org/data_1355" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1355" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Protein signature" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0160,
@@ -378556,10 +398122,9 @@ PrInCE is a computational approach to infer protein-protein interaction networks
 
 <https://bio.tools/printsextract> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1365" ;
-            sc:name "Fingerprint" ;
-            sc:sameAs "http://edamontology.org/data_1365" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1365" ;
+            sc:name "Fingerprint" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0160 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -378589,7 +398154,7 @@ PrInCE is a computational approach to infer protein-protein interaction networks
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/printsextract.html" .
 
 <https://bio.tools/priori-t> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3325,
         edam:topic_3577 ;
@@ -378605,7 +398170,7 @@ Phenotype-driven rare disease gene prioritization relies on high quality curated
     sc:url "https://web.rniapps.net/priori-t/PRIORI-T.tar.gz" .
 
 <https://bio.tools/priority> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0654 ;
@@ -378621,8 +398186,49 @@ Phenotype-driven rare disease gene prioritization relies on high quality curated
     sc:softwareVersion "2.1.0" ;
     sc:url "http://www.cs.duke.edu/~amink/software/priority/" .
 
+<https://bio.tools/priority_index> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Library",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0602,
+        edam:topic_0634,
+        edam:topic_3574,
+        edam:topic_3930 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAB994>,
+        "pmcid:PMC8728240",
+        "pubmed:34751399" ;
+    sc:description "A Comprehensive Resource for Genetic Targets in Immune-Mediated Disease" ;
+    sc:featureList edam:operation_2421,
+        edam:operation_3672,
+        edam:operation_4009 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "Priority index" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <http://bioconductor.org/packages/release/bioc/manuals/Pi/man/Pi.pdf> ;
+    sc:url "http://pi.well.ox.ac.uk" .
+
+<https://bio.tools/priorr> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Desktop application" ;
+    sc:applicationSubCategory edam:topic_0091 ;
+    sc:description "Priorr is a prioritization program of disease-linked genetic variants devoloped within the Genetics&Genomics Department of La Fundacion Jimenez Diaz University Hospital. Priorr is conceived to analyse the output of the FJD-pipeline of SNVs or CNVs. This software program offers a number of useful functionalities for variant analysis such as: filtering by a virtual panel of genes. manual control of different population frequencies or pathogenicity predictors or filtering out variants that have been already found by another protocol." ;
+    sc:isAccessibleForFree true ;
+    sc:license "CC-BY-NC-SA-4.0" ;
+    sc:name "PriorR" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://github.com/TBLabFJD/PriorR> ;
+    sc:url "https://github.com/TBLabFJD/PriorR" ;
+    biotools:primaryContact <https://orcid.org/0000-0003-4099-9421> .
+
 <https://bio.tools/prise> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0632 ;
@@ -378635,7 +398241,7 @@ Phenotype-driven rare disease gene prioritization relies on high quality curated
     sc:url "http://alglab1.cs.ucr.edu/OFRG/PRISE.php" .
 
 <https://bio.tools/priset> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0632,
         edam:topic_3168,
         edam:topic_3511,
@@ -378653,7 +398259,7 @@ Tool for assisting the search of primer sequences for metabarcoding experiments.
     sc:url "https://github.com/mariehoffmann/PriSeT" .
 
 <https://bio.tools/prism> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0081 ;
@@ -378667,7 +398273,7 @@ Tool for assisting the search of primer sequences for metabarcoding experiments.
     biotools:primaryContact "Support" .
 
 <https://bio.tools/prism-ppi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0128,
@@ -378683,7 +398289,7 @@ Tool for assisting the search of primer sequences for metabarcoding experiments.
     sc:url "http://cosbi.ku.edu.tr/prism/" .
 
 <https://bio.tools/prism-primer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0632,
         edam:topic_0781,
@@ -378697,7 +398303,7 @@ Tool for assisting the search of primer sequences for metabarcoding experiments.
     sc:url "http://www.broadinstitute.org/scientific-community/science/projects/viral-genomics/prism" .
 
 <https://bio.tools/prism-rna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3170,
@@ -378716,7 +398322,7 @@ Tool for assisting the search of primer sequences for metabarcoding experiments.
         "Sampsa Hautaniemi" .
 
 <https://bio.tools/prism-seq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2258,
         edam:topic_3172,
@@ -378735,7 +398341,7 @@ Novel antibiotics are urgently needed to address the looming global crisis of an
     sc:url "http://prism.adapsyn.com" .
 
 <https://bio.tools/prism_3> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_2258,
@@ -378752,7 +398358,7 @@ Novel antibiotics are urgently needed to address the looming global crisis of an
     sc:url "http://magarveylab.ca/prism/" .
 
 <https://bio.tools/prismatic> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0611,
         edam:topic_3370,
@@ -378773,7 +398379,7 @@ Novel antibiotics are urgently needed to address the looming global crisis of an
     biotools:primaryContact "Alan Pryor" .
 
 <https://bio.tools/privacy-net> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_3384,
         edam:topic_3444 ;
@@ -378786,22 +398392,22 @@ Novel antibiotics are urgently needed to address the looming global crisis of an
 
 <https://bio.tools/prize> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2082" ;
-            sc:name "Matrix" ;
-            sc:sameAs "http://edamontology.org/data_2082" ] ;
+            sc:additionalType "http://edamontology.org/data_2082" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Matrix" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1772" ;
-            sc:name "Score" ;
-            sc:sameAs "http://edamontology.org/data_1772" ],
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "Plot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ],
+            sc:additionalType "http://edamontology.org/data_1669" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "P-value" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1669" ;
-            sc:name "P-value" ;
-            sc:sameAs "http://edamontology.org/data_1669" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1772" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "Score" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -378821,7 +398427,7 @@ Novel antibiotics are urgently needed to address the looming global crisis of an
     biotools:primaryContact "Daryanaz Dargahi" .
 
 <https://bio.tools/prlogistic> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3575,
@@ -378841,7 +398447,7 @@ Novel antibiotics are urgently needed to address the looming global crisis of an
     sc:url "https://cran.r-project.org/package=prLogistic" .
 
 <https://bio.tools/prm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0157,
         edam:topic_0160,
         edam:topic_0166 ;
@@ -378857,7 +398463,7 @@ Motifs are the evolutionarily conserved patterns which are reported to serve the
     sc:url "https://bioserver.iiita.ac.in/Pr[m]/" .
 
 <https://bio.tools/prmdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0659,
         edam:topic_0780,
@@ -378884,7 +398490,7 @@ The sequencing data used to create PRMdb are derived from NCBI, Plant MPSS db or
     sc:url "http://www.biosequencing.cn/PRMdb/" .
 
 <https://bio.tools/prmepred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3474 ;
@@ -378899,8 +398505,31 @@ The sequencing data used to create PRMdb are derived from NCBI, Plant MPSS db or
     sc:url "http://bioinfo.icgeb.res.in/PRmePRed/" ;
     biotools:primaryContact "Dinesh Gupta" .
 
+<https://bio.tools/prmeth> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0654,
+        edam:topic_2229,
+        edam:topic_2640,
+        edam:topic_3295,
+        edam:topic_3934 ;
+    sc:citation <https://doi.org/10.1186/S12859-022-04893-7>,
+        "pmcid:PMC9400327",
+        "pubmed:36002797" ;
+    sc:description "Deconvolution of tumor composition using partially available DNA methylation data." ;
+    sc:featureList edam:operation_0417,
+        edam:operation_3204,
+        edam:operation_3629 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "PRMeth" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/hedingqin/PRMeth" .
+
 <https://bio.tools/prn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0593,
         edam:topic_3304,
@@ -378915,7 +398544,7 @@ The sequencing data used to create PRMdb are derived from NCBI, Plant MPSS db or
     biotools:primaryContact <http://orcid.org/0000-0003-3413-5977> .
 
 <https://bio.tools/prnam-pc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0099,
@@ -378931,7 +398560,7 @@ The sequencing data used to create PRMdb are derived from NCBI, Plant MPSS db or
     sc:url "http://www.jci-bioinfo.cn/pRNAm-PC" .
 
 <https://bio.tools/pro> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0089,
@@ -378953,7 +398582,7 @@ The sequencing data used to create PRMdb are derived from NCBI, Plant MPSS db or
     biotools:primaryContact "Protein Information Resource" .
 
 <https://bio.tools/pro-bs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_3534 ;
@@ -378967,7 +398596,7 @@ The sequencing data used to create PRMdb are derived from NCBI, Plant MPSS db or
     sc:url "https://sites.google.com/site/guofeics/pro-bs" .
 
 <https://bio.tools/pro-coffee> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -378983,8 +398612,27 @@ The sequencing data used to create PRMdb are derived from NCBI, Plant MPSS db or
     sc:softwareHelp <http://tcoffee.crg.cat/apps/tcoffee/tutorial.html> ;
     sc:url "http://tcoffee.crg.cat/apps/tcoffee/do:procoffee" .
 
+<https://bio.tools/pro-gram> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_2640,
+        edam:topic_2830,
+        edam:topic_3384,
+        edam:topic_3452 ;
+    sc:citation <https://doi.org/10.1097/MNM.0000000000001591>,
+        "pubmed:35661662" ;
+    sc:description "Development and validation of a nomogram for predicting the likelihood of metastasis in prostate cancer patients undergoing Ga-68 PSMA PET/CT due to biochemical recurrence." ;
+    sc:featureList edam:operation_0252,
+        edam:operation_3659 ;
+    sc:isAccessibleForFree true ;
+    sc:name "pro-gram" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://pro-gram.nzm.co" .
+
 <https://bio.tools/pro-maya> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0130,
@@ -379001,7 +398649,7 @@ The sequencing data used to create PRMdb are derived from NCBI, Plant MPSS db or
     sc:url "http://bental.tau.ac.il/ProMaya/" .
 
 <https://bio.tools/pro_fit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_1775 ;
     sc:description "Application for data/function analysis, plotting, and curve fitting. It is used by scientists and engineers to analyze their measurements and the mathematical models they use to describe them." ;
@@ -379016,14 +398664,12 @@ The sequencing data used to create PRMdb are derived from NCBI, Plant MPSS db or
 
 <https://bio.tools/proabc> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:name "Protein sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0906" ;
-            sc:name "Protein interaction data" ;
-            sc:sameAs "http://edamontology.org/data_0906" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0906" ;
+            sc:name "Protein interaction data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0081 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btt369> ;
@@ -379041,7 +398687,7 @@ The sequencing data used to create PRMdb are derived from NCBI, Plant MPSS db or
     biotools:primaryContact "Pier Paolo Olimpieri" .
 
 <https://bio.tools/proabc-2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2275,
         edam:topic_2830,
         edam:topic_3474 ;
@@ -379056,7 +398702,7 @@ To use ProABC-2, you just need to provide the sequences of the heavy and light c
     sc:url "https://bianca.science.uu.nl/proabc2/" .
 
 <https://bio.tools/prob2plinkbig> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2269 ;
     sc:description "Use Prob2plinkbig to convert large MACH probability files to PLINK dosage files." ;
@@ -379068,7 +398714,7 @@ To use ProABC-2, you just need to provide the sequences of the heavy and light c
     sc:url "http://ctglab.nl/software/prob2plinkbig" .
 
 <https://bio.tools/probabilistic-graphlets> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0749,
@@ -379087,14 +398733,14 @@ To use ProABC-2, you just need to provide the sequences of the heavy and light c
 
 <https://bio.tools/probamr> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ] ;
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:encodingFormat "http://edamontology.org/format_2306" ;
+            sc:name "Mass spectrometry data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2012" ;
-            sc:name "Sequence coordinates" ;
-            sc:sameAs "http://edamontology.org/data_2012" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2012" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
+            sc:name "Sequence coordinates" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -379119,7 +398765,7 @@ To use ProABC-2, you just need to provide the sequences of the heavy and light c
     biotools:primaryContact "Xiaojing Wang" .
 
 <https://bio.tools/probatch> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0121 ;
     sc:description "This tool facilitates batch effects analysis and correction in high-throughput experiments. It was developed primarily for mass-spectrometry based proteomics (DIA/SWATH). The package contains functions for diagnostics (proteome-wide and feature-level), correction (normalization and batch effects correction) and quality control. Non-linear fitting based approaches were also included to deal with complex, mass spectrometry-specific signal drifts." ;
@@ -379136,8 +398782,31 @@ To use ProABC-2, you just need to provide the sequences of the heavy and light c
     sc:url "https://github.com/symbioticMe/proBatch" ;
     biotools:primaryContact <https://orcid.org/0000-0002-5220-8642> .
 
+<https://bio.tools/probc> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0749,
+        edam:topic_3169,
+        edam:topic_3173,
+        edam:topic_3308,
+        edam:topic_3974 ;
+    sc:citation <https://doi.org/10.1186/S12864-022-08498-5>,
+        "pmcid:PMC8994916",
+        "pubmed:35397520" ;
+    sc:description "Joint modeling of epigenome and transcriptome effects in 3D genome." ;
+    sc:featureList edam:operation_0445,
+        edam:operation_2575,
+        edam:operation_3222 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "PROBC" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://www.github.com/seferlab/probc" .
+
 <https://bio.tools/probcons> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
@@ -379153,7 +398822,7 @@ To use ProABC-2, you just need to provide the sequences of the heavy and light c
     sc:url "http://probcons.stanford.edu/" .
 
 <https://bio.tools/probcons_ws_jabaws> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btr304> ;
@@ -379170,7 +398839,7 @@ To use ProABC-2, you just need to provide the sequences of the heavy and light c
     sc:url "http://www.compbio.dundee.ac.uk/jabaws/" .
 
 <https://bio.tools/probe> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0632,
@@ -379192,14 +398861,13 @@ To use ProABC-2, you just need to provide the sequences of the heavy and light c
 
 <https://bio.tools/probe_and_primer_search> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ] ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:name "Nucleic acid sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0857" ;
-            sc:name "Sequence search results" ;
-            sc:sameAs "http://edamontology.org/data_0857" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0857" ;
+            sc:encodingFormat "http://edamontology.org/format_3468" ;
+            sc:name "Sequence search results" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_2830 ;
@@ -379220,7 +398888,7 @@ To use ProABC-2, you just need to provide the sequences of the heavy and light c
     biotools:primaryContact "James Robinson" .
 
 <https://bio.tools/probe_select> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0632,
         edam:topic_0654 ;
@@ -379233,7 +398901,7 @@ To use ProABC-2, you just need to provide the sequences of the heavy and light c
     sc:url "http://stormo.wustl.edu/resources.html" .
 
 <https://bio.tools/probealign> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0659,
@@ -379246,8 +398914,30 @@ To use ProABC-2, you just need to provide the sequences of the heavy and light c
     sc:softwareVersion "0.3" ;
     sc:url "http://genome.ucf.edu/ProbeAlign/" .
 
+<https://bio.tools/probeinterface> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0632,
+        edam:topic_3077,
+        edam:topic_3300,
+        edam:topic_3304 ;
+    sc:citation <https://doi.org/10.3389/FNINF.2022.823056>,
+        "pmcid:PMC8887962",
+        "pubmed:35242020" ;
+    sc:description "A Python package to handle the layout, geometry, and wiring of silicon probes for extracellular electrophysiology experiments." ;
+    sc:featureList edam:operation_0335,
+        edam:operation_1812 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "ProbeInterface" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://probeinterface.readthedocs.io/en/main/> ;
+    sc:url "https://gin.g-node.org/spikeinterface/probeinterface_library" .
+
 <https://bio.tools/probelynx> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0632,
@@ -379265,7 +398955,7 @@ To use ProABC-2, you just need to provide the sequences of the heavy and light c
     biotools:primaryContact "ProbeLynx team" .
 
 <https://bio.tools/probematch> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0622,
@@ -379283,7 +398973,7 @@ To use ProABC-2, you just need to provide the sequences of the heavy and light c
     biotools:primaryContact "Support (Please put \"ProbeMatch Help\" in the Subject line of your email.)" .
 
 <https://bio.tools/probeplus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0203 ;
     sc:citation <https://doi.org/10.1186/1471-2164-6-16> ;
@@ -379297,7 +398987,7 @@ To use ProABC-2, you just need to provide the sequences of the heavy and light c
     sc:url "http://qge.fhcrc.org/probeplus/" .
 
 <https://bio.tools/prober> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0632,
@@ -379312,7 +399002,7 @@ To use ProABC-2, you just need to provide the sequences of the heavy and light c
     sc:url "http://prober.cshl.edu/" .
 
 <https://bio.tools/prober-chem> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_3308 ;
@@ -379331,7 +399021,7 @@ To use ProABC-2, you just need to provide the sequences of the heavy and light c
     biotools:primaryContact "Lior Pachter" .
 
 <https://bio.tools/proberating> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0749,
         edam:topic_3169,
@@ -379350,7 +399040,7 @@ the interaction between proteins and nucleic acids plays a crucial role in gene
     sc:url "https://github.com/syang11/ProbeRating" .
 
 <https://bio.tools/probespec> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0102,
@@ -379365,7 +399055,7 @@ the interaction between proteins and nucleic acids plays a crucial role in gene
     sc:url "http://www.cs.technion.ac.il/labs/cbl/probespec/" .
 
 <https://bio.tools/probias> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_2269 ;
@@ -379382,8 +399072,30 @@ It automatically searches a user-supplied protein sequence for segments that con
     sc:softwareHelp <http://lcg.rit.albany.edu/bias/bias_guide_v1_0.txt> ;
     sc:url "http://lcg.rit.albany.edu/bias/" .
 
+<https://bio.tools/probioquest> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_3063,
+        edam:topic_3068,
+        edam:topic_3379,
+        edam:topic_3398,
+        edam:topic_3697 ;
+    sc:citation <https://doi.org/10.1093/DATABASE/BAAC059>,
+        "pmcid:PMC9290863",
+        "pubmed:35849028" ;
+    sc:description "A database and semantic analysis engine for literature, clinical trials and patents related to probiotics." ;
+    sc:featureList edam:operation_2421,
+        edam:operation_3695,
+        edam:operation_3802 ;
+    sc:isAccessibleForFree true ;
+    sc:name "ProBioQuest" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://kwanlab.bio.cuhk.edu.hk/PBQ/" .
+
 <https://bio.tools/probis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0166,
@@ -379405,7 +399117,7 @@ It automatically searches a user-supplied protein sequence for segments that con
     biotools:primaryContact "Support" .
 
 <https://bio.tools/probis-charmming> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_3510,
@@ -379422,8 +399134,29 @@ It automatically searches a user-supplied protein sequence for segments that con
     sc:url "https://probis.nih.gov/" ;
     biotools:primaryContact "Support" .
 
+<https://bio.tools/probis-dock> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0821,
+        edam:topic_2275,
+        edam:topic_3047,
+        edam:topic_3534 ;
+    sc:citation <https://doi.org/10.1021/ACS.JCIM.1C01176>,
+        "pubmed:35289616" ;
+    sc:description "A Hybrid Multitemplate Homology Flexible Docking Algorithm Enabled by Protein Binding Site Comparison." ;
+    sc:featureList edam:operation_0482,
+        edam:operation_3899,
+        edam:operation_4009 ;
+    sc:isAccessibleForFree true ;
+    sc:name "ProBiS-Dock" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://insilab.org/probisdock" .
+
 <https://bio.tools/probis-dock_database> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
@@ -379448,7 +399181,7 @@ It automatically searches a user-supplied protein sequence for segments that con
     sc:url "http://probis-dock-database.insilab.org" .
 
 <https://bio.tools/probis-ligands> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0749,
@@ -379473,7 +399206,7 @@ It automatically searches a user-supplied protein sequence for segments that con
     biotools:primaryContact "ProBiS Support" .
 
 <https://bio.tools/problm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0128,
@@ -379490,7 +399223,7 @@ It automatically searches a user-supplied protein sequence for segments that con
     sc:url "http://compbio.clemson.edu/sapp/problm_webserver/" .
 
 <https://bio.tools/probmetab> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3172 ;
@@ -379511,8 +399244,34 @@ It automatically searches a user-supplied protein sequence for segments that con
     sc:url "http://labpib.fmrp.usp.br/methods/probmetab/" ;
     biotools:primaryContact "Ricardo Z. N. Vêncio" .
 
+<https://bio.tools/probresist> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1045" ;
+            sc:name "Species name" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_0990" ;
+            sc:name "Compound name" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0219,
+        edam:topic_3063,
+        edam:topic_3500 ;
+    sc:citation <https://doi.org/10.1093/DATABASE/BAAC064>,
+        "pmcid:PMC9375527",
+        "pubmed:35962763" ;
+    sc:description "A database for drug-resistant probiotic bacteria." ;
+    sc:featureList edam:operation_2421,
+        edam:operation_2422,
+        edam:operation_3482 ;
+    sc:isAccessibleForFree true ;
+    sc:name "ProbResist" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://probresist.com" .
+
 <https://bio.tools/probrna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0099 ;
@@ -379527,7 +399286,7 @@ It automatically searches a user-supplied protein sequence for segments that con
     sc:url "http://hkbic.cuhk.edu.hk/software/probrna" .
 
 <https://bio.tools/probselect> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0176,
@@ -379547,7 +399306,7 @@ PROBselect suggests a predictor that is likely to provide the best prediction of
     sc:url "http://bioinformatics.csu.edu.cn/PROBselect/home/index" .
 
 <https://bio.tools/proc_qtl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3053 ;
@@ -379562,7 +399321,7 @@ PROBselect suggests a predictor that is likely to provide the best prediction of
     sc:url "http://statgen.ucr.edu/software.html" .
 
 <https://bio.tools/procaff> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0152,
         edam:topic_3068,
         edam:topic_3071 ;
@@ -379580,7 +399339,7 @@ ProCaff, a database on binding affinity of protein-carbohydrate complexes, ProCa
     sc:url "http://web.iitm.ac.in/bioinfo2/procaff/" .
 
 <https://bio.tools/procanbio> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0219,
@@ -379601,22 +399360,19 @@ ProCaff, a database on binding affinity of protein-carbohydrate complexes, ProCa
 
 <https://bio.tools/procars> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3272" ;
-            sc:name "Species tree" ;
-            sc:sameAs "http://edamontology.org/data_3272" ],
+            sc:additionalType "http://edamontology.org/data_3272" ;
+            sc:encodingFormat "http://edamontology.org/format_1910" ;
+            sc:name "Species tree" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3479" ;
-            sc:name "Gene order" ;
-            sc:sameAs "http://edamontology.org/data_3479" ] ;
+            sc:additionalType "http://edamontology.org/data_3479" ;
+            sc:name "Gene order" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2082" ;
-            sc:name "Matrix" ;
-            sc:sameAs "http://edamontology.org/data_2082" ],
+            sc:additionalType "http://edamontology.org/data_2082" ;
+            sc:name "Matrix" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3479" ;
-            sc:name "Gene order" ;
-            sc:sameAs "http://edamontology.org/data_3479" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3479" ;
+            sc:name "Gene order" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0084 ;
     sc:citation <https://doi.org/10.1186/1471-2164-16-S5-S6> ;
@@ -379633,7 +399389,7 @@ ProCaff, a database on binding affinity of protein-carbohydrate complexes, ProCa
     biotools:primaryContact "PERRIN Amandine" .
 
 <https://bio.tools/procdata> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0621,
@@ -379654,7 +399410,7 @@ ProCaff, a database on binding affinity of protein-carbohydrate complexes, ProCa
     sc:url "http://CRAN.R-project.org/package=ProcData" .
 
 <https://bio.tools/proceed> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3360 ;
@@ -379668,7 +399424,7 @@ ProCaff, a database on binding affinity of protein-carbohydrate complexes, ProCa
     sc:url "https://www.epa.gov/chemical-research/probabilistic-reverse-dosimetry-estimating-exposure-distribution-proceed" .
 
 <https://bio.tools/process> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -379688,7 +399444,7 @@ ProCaff, a database on binding affinity of protein-carbohydrate complexes, ProCa
     biotools:primaryContact "Xiaochun Li" .
 
 <https://bio.tools/process-cell-images> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_2229,
@@ -379706,7 +399462,7 @@ ProCaff, a database on binding affinity of protein-carbohydrate complexes, ProCa
     biotools:primaryContact "UVa iGem" .
 
 <https://bio.tools/procheck> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0593,
@@ -379720,8 +399476,33 @@ ProCaff, a database on binding affinity of protein-carbohydrate complexes, ProCa
     sc:softwareHelp <http://www.ebi.ac.uk/thornton-srv/software/PROCHECK/manual/> ;
     sc:url "http://www.ebi.ac.uk/thornton-srv/software/PROCHECK/" .
 
+<https://bio.tools/prochipdb> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0621,
+        edam:topic_0749,
+        edam:topic_3068,
+        edam:topic_3169,
+        edam:topic_3179 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAB1043>,
+        "pmcid:PMC8728212",
+        "pubmed:34791440" ;
+    sc:description "A PROkaryotic Chromatin ImmunoPrecipitation DataBase" ;
+    sc:featureList edam:operation_0445,
+        edam:operation_3222,
+        edam:operation_3900 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "proChIPdb" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <http://prochipdb.org/about.html> ;
+    sc:url "https://prochipdb.org" .
+
 <https://bio.tools/procksi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0102,
@@ -379745,7 +399526,7 @@ ProCaff, a database on binding affinity of protein-carbohydrate complexes, ProCa
     biotools:primaryContact "ProCKSI Support" .
 
 <https://bio.tools/proclass> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2814 ;
     sc:description "PROCLASS allows to predict the class of protein from its amino acid sequence. It predict weather protein belong to class Alpha or Beta or Alpha+Beta or Alpha/Beta." ;
@@ -379756,10 +399537,10 @@ ProCaff, a database on binding affinity of protein-carbohydrate complexes, ProCa
     sc:operatingSystem "Linux",
         "Mac",
         "Windows" ;
-    sc:url "http://www.imtech.res.in/raghava/proclass/" .
+    sc:url "http://webs.iiitd.edu.in/raghava/proclass/" .
 
 <https://bio.tools/procleave> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
         edam:topic_0821,
@@ -379788,7 +399569,7 @@ We have mapped the substrates deposited in MEROPS onto the structural database P
     sc:url "http://procleave.erc.monash.edu/" .
 
 <https://bio.tools/procode> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3305,
         edam:topic_3474 ;
@@ -379804,7 +399585,7 @@ We have mapped the substrates deposited in MEROPS onto the structural database P
     sc:url "http://www.pro-code.ch" .
 
 <https://bio.tools/procoil> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0078,
@@ -379827,14 +399608,14 @@ We have mapped the substrates deposited in MEROPS onto the structural database P
 
 <https://bio.tools/procon> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ] ;
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Mass spectrometry data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:encodingFormat "http://edamontology.org/format_3248" ;
+            sc:name "Mass spectrometry data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0121 ;
@@ -379857,14 +399638,14 @@ We have mapped the substrates deposited in MEROPS onto the structural database P
 
 <https://bio.tools/procona> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ] ;
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:encodingFormat "http://edamontology.org/format_3245" ;
+            sc:name "Mass spectrometry data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:encodingFormat "http://edamontology.org/format_3508" ;
+            sc:name "Pathway or network" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0108,
@@ -379885,7 +399666,7 @@ We have mapped the substrates deposited in MEROPS onto the structural database P
     biotools:primaryContact "David L Gibbs" .
 
 <https://bio.tools/proda> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0736,
@@ -379898,8 +399679,36 @@ We have mapped the substrates deposited in MEROPS onto the structural database P
     sc:softwareHelp <http://proda.stanford.edu/manual.pdf> ;
     sc:url "http://proda.stanford.edu/" .
 
+<https://bio.tools/prodconn> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein structure" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0082,
+        edam:topic_0130,
+        edam:topic_0154,
+        edam:topic_0736,
+        edam:topic_2269 ;
+    sc:citation <https://doi.org/10.1002/prot.25868>,
+        <https://doi.org/10.1101/2021.11.04.467289>,
+        "pmcid:PMC8204568",
+        "pubmed:31867753" ;
+    sc:description "ProDCoNN is a web-based tool for protein design from given three-dimensional structures." ;
+    sc:featureList edam:operation_0303,
+        edam:operation_0474,
+        edam:operation_4008 ;
+    sc:isAccessibleForFree true ;
+    sc:name "ProDCoNN" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareVersion "1.0" ;
+    sc:url "https://prodconn.stat.fsu.edu/" .
+
 <https://bio.tools/prodepth> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1371/journal.pone.0007072> ;
@@ -379914,7 +399723,7 @@ We have mapped the substrates deposited in MEROPS onto the structural database P
     sc:url "http://sunflower.kuicr.kyoto-u.ac.jp/~sjn/Prodepth/" .
 
 <https://bio.tools/proderal> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0102,
@@ -379930,7 +399739,7 @@ We have mapped the substrates deposited in MEROPS onto the structural database P
     sc:url "https://github.com/Benjamin-Crysup/proderal.git" .
 
 <https://bio.tools/prodesign> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
@@ -379948,7 +399757,7 @@ We have mapped the substrates deposited in MEROPS onto the structural database P
     sc:url "http://www.uhnresearch.ca/labs/tillier/software.htm#7" .
 
 <https://bio.tools/prodge> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0602 ;
@@ -379964,7 +399773,7 @@ We have mapped the substrates deposited in MEROPS onto the structural database P
     sc:url "http://www.ra.cs.uni-tuebingen.de/software/ProDGe/index.htm" .
 
 <https://bio.tools/prodigy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0602,
@@ -379986,7 +399795,7 @@ We have mapped the substrates deposited in MEROPS onto the structural database P
     sc:url "http://milou.science.uu.nl/services/PRODIGY/" .
 
 <https://bio.tools/prodigy-cancer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0602,
         edam:topic_2640,
@@ -380002,7 +399811,7 @@ We have mapped the substrates deposited in MEROPS onto the structural database P
     sc:url "https://github.com/Shamir-Lab/PRODIGY" .
 
 <https://bio.tools/prodmx> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0736,
         edam:topic_0769,
@@ -380023,7 +399832,7 @@ ProdMX is a tool with user-friendly utilities developed to facilitate high-throu
     sc:url "https://github.com/visanuwan/prodmx" .
 
 <https://bio.tools/prodoc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0622,
@@ -380041,46 +399850,41 @@ ProdMX is a tool with user-friendly utilities developed to facilitate high-throu
 
 <https://bio.tools/prodom> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1142" ;
-            sc:name "ProDom accession number" ;
-            sc:sameAs "http://edamontology.org/data_1142" ],
+            sc:additionalType "http://edamontology.org/data_1142" ;
+            sc:name "ProDom accession number" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1142" ;
-            sc:name "ProDom accession number" ;
-            sc:sameAs "http://edamontology.org/data_1142" ],
+            sc:additionalType "http://edamontology.org/data_1142" ;
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         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1142" ;
-            sc:name "ProDom accession number" ;
-            sc:sameAs "http://edamontology.org/data_1142" ],
+            sc:additionalType "http://edamontology.org/data_1142" ;
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         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1142" ;
-            sc:name "ProDom accession number" ;
-            sc:sameAs "http://edamontology.org/data_1142" ],
+            sc:additionalType "http://edamontology.org/data_1142" ;
+            sc:name "ProDom accession number" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1142" ;
-            sc:name "ProDom accession number" ;
-            sc:sameAs "http://edamontology.org/data_1142" ] ;
+            sc:additionalType "http://edamontology.org/data_1142" ;
+            sc:name "ProDom accession number" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0907" ;
-            sc:name "Protein family report" ;
-            sc:sameAs "http://edamontology.org/data_0907" ],
+            sc:additionalType "http://edamontology.org/data_0907" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Protein family report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1384" ;
-            sc:name "Sequence alignment (protein)" ;
-            sc:sameAs "http://edamontology.org/data_1384" ],
+            sc:additionalType "http://edamontology.org/data_1384" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
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         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1384" ;
-            sc:name "Sequence alignment (protein)" ;
-            sc:sameAs "http://edamontology.org/data_1384" ],
+            sc:additionalType "http://edamontology.org/data_1276" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Nucleic acid features" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0872" ;
-            sc:name "Phylogenetic tree" ;
-            sc:sameAs "http://edamontology.org/data_0872" ],
+            sc:additionalType "http://edamontology.org/data_0872" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Phylogenetic tree" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1276" ;
-            sc:name "Nucleic acid features" ;
-            sc:sameAs "http://edamontology.org/data_1276" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1384" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Sequence alignment (protein)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0623,
         edam:topic_0736 ;
@@ -380095,7 +399899,7 @@ ProdMX is a tool with user-friendly utilities developed to facilitate high-throu
     sc:url "http://prodom.prabi.fr/prodom/current/html/home.php" .
 
 <https://bio.tools/prodomcg_evoscen> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0736,
         edam:topic_3071 ;
@@ -380109,7 +399913,7 @@ ProdMX is a tool with user-friendly utilities developed to facilitate high-throu
     sc:url "http://www.health2api.com/?p=10236" .
 
 <https://bio.tools/prodomcg_tree> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0736,
         edam:topic_3071,
@@ -380125,7 +399929,7 @@ ProdMX is a tool with user-friendly utilities developed to facilitate high-throu
     sc:url "http://www.health2api.com/?p=10237" .
 
 <https://bio.tools/prodonet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0203,
@@ -380147,8 +399951,33 @@ ProdMX is a tool with user-friendly utilities developed to facilitate high-throu
     sc:url "http://www.prodonet.tu-bs.de" ;
     biotools:primaryContact "Webmaster" .
 
+<https://bio.tools/prodoric> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0091,
+        edam:topic_0114,
+        edam:topic_0204,
+        edam:topic_0621,
+        edam:topic_0749 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAB1110>,
+        "pmcid:PMC8728284",
+        "pubmed:34850133" ;
+    sc:description "The most comprehensive database for gene regulation and gene expression in prokaryotes." ;
+    sc:featureList edam:operation_0435,
+        edam:operation_0445,
+        edam:operation_0579,
+        edam:operation_1781,
+        edam:operation_2437 ;
+    sc:isAccessibleForFree true ;
+    sc:license "CC-BY-NC-4.0" ;
+    sc:name "PRODORIC" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://www.prodoric.de" .
+
 <https://bio.tools/prody> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_2814 ;
@@ -380174,7 +400003,7 @@ ProdMX is a tool with user-friendly utilities developed to facilitate high-throu
         <https://orcid.org/0000-0002-3446-2962> .
 
 <https://bio.tools/prof_sim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0097,
@@ -380190,14 +400019,14 @@ ProdMX is a tool with user-friendly utilities developed to facilitate high-throu
 
 <https://bio.tools/profacc> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2974" ;
-            sc:name "Protein sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_2974" ] ;
+            sc:additionalType "http://edamontology.org/data_2974" ;
+            sc:encodingFormat "http://edamontology.org/format_2200" ;
+            sc:name "Protein sequence (raw)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2886" ;
-            sc:name "Protein sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2886" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2886" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Protein sequence record" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_2814 ;
@@ -380219,7 +400048,7 @@ ProdMX is a tool with user-friendly utilities developed to facilitate high-throu
     sc:url "http://ppopen.informatik.tu-muenchen.de/" .
 
 <https://bio.tools/profatigue> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3318,
         edam:topic_3372 ;
@@ -380235,7 +400064,7 @@ Software for fitting fatigue data.""" ;
     sc:url "https://meteo.unican.es/temp/castie/Profatigue.html" .
 
 <https://bio.tools/profcom> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0160,
@@ -380258,14 +400087,14 @@ Software for fitting fatigue data.""" ;
 
 <https://bio.tools/profdisis> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2886" ;
-            sc:name "Protein sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2886" ] ;
+            sc:additionalType "http://edamontology.org/data_2886" ;
+            sc:encodingFormat "http://edamontology.org/format_2200" ;
+            sc:name "Protein sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1276" ;
-            sc:name "Nucleic acid features" ;
-            sc:sameAs "http://edamontology.org/data_1276" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1276" ;
+            sc:encodingFormat "http://edamontology.org/format_2062" ;
+            sc:name "Nucleic acid features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0128 ;
@@ -380288,7 +400117,7 @@ Software for fitting fatigue data.""" ;
     sc:url "http://ppopen.informatik.tu-muenchen.de/" .
 
 <https://bio.tools/profeat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
@@ -380323,7 +400152,7 @@ Software for fitting fatigue data.""" ;
         "Zhang Peng" .
 
 <https://bio.tools/profed> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0108,
@@ -380341,8 +400170,28 @@ Software for fitting fatigue data.""" ;
     sc:url "http://ebi056.uni-muenster.de:3838/profed/" ;
     biotools:primaryContact "Jenny Potratz" .
 
+<https://bio.tools/profeel> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Desktop application" ;
+    sc:applicationSubCategory edam:topic_0092,
+        edam:topic_3393 ;
+    sc:citation <https://doi.org/10.1016/J.CMPB.2021.106457>,
+        "pubmed:34666203" ;
+    sc:description "Profeel is an open-source dosimetry data visualization software (MATLAB®), which can be used for 1D, 2D and 3D data comparison, data processing and analytics." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3435,
+        edam:operation_3695 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "Profeel" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://github.com/TPakar/Profeel/blob/main/Instructions%20for%20use.pdf> ;
+    sc:url "https://github.com/TPakar/Profeel" .
+
 <https://bio.tools/profet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -380359,14 +400208,14 @@ Software for fitting fatigue data.""" ;
 
 <https://bio.tools/profhtm> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2886" ;
-            sc:name "Protein sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2886" ] ;
+            sc:additionalType "http://edamontology.org/data_2886" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0896" ;
-            sc:name "Protein report" ;
-            sc:sameAs "http://edamontology.org/data_0896" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0896" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Protein report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
@@ -380389,7 +400238,7 @@ Software for fitting fatigue data.""" ;
     sc:url "http://ppopen.informatik.tu-muenchen.de/" .
 
 <https://bio.tools/profia> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3172 ;
@@ -380407,7 +400256,7 @@ Software for fitting fatigue data.""" ;
     biotools:primaryContact "Alexis Delabriere" .
 
 <https://bio.tools/profilescoredist> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0160 ;
@@ -380426,14 +400275,14 @@ Software for fitting fatigue data.""" ;
 
 <https://bio.tools/profisis> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2886" ;
-            sc:name "Protein sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2886" ] ;
+            sc:additionalType "http://edamontology.org/data_2886" ;
+            sc:encodingFormat "http://edamontology.org/format_2200" ;
+            sc:name "Protein sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1276" ;
-            sc:name "Nucleic acid features" ;
-            sc:sameAs "http://edamontology.org/data_1276" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1276" ;
+            sc:encodingFormat "http://edamontology.org/format_2062" ;
+            sc:name "Nucleic acid features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0128 ;
@@ -380457,18 +400306,15 @@ Software for fitting fatigue data.""" ;
 
 <https://bio.tools/profit> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1354" ;
-            sc:name "Sequence profile" ;
-            sc:sameAs "http://edamontology.org/data_1354" ],
+            sc:additionalType "http://edamontology.org/data_1354" ;
+            sc:name "Sequence profile" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0869" ;
-            sc:name "Sequence-profile alignment" ;
-            sc:sameAs "http://edamontology.org/data_0869" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0869" ;
+            sc:name "Sequence-profile alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0160 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -380498,7 +400344,7 @@ Software for fitting fatigue data.""" ;
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/profit.html" .
 
 <https://bio.tools/profitfun> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0154,
@@ -380522,7 +400368,7 @@ Software for fitting fatigue data.""" ;
     sc:url "http://github.com/KYZ-LSB/ProTerS-FitFun" .
 
 <https://bio.tools/profkin> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0202,
         edam:topic_2275,
@@ -380540,14 +400386,14 @@ Kinase profiling is an efficient strategy for kinase inhibitor discovery, polyph
 
 <https://bio.tools/profound> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0944" ;
-            sc:name "Peptide mass fingerprint" ;
-            sc:sameAs "http://edamontology.org/data_0944" ] ;
+            sc:additionalType "http://edamontology.org/data_0944" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Peptide mass fingerprint" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Peptide identification" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -380568,7 +400414,7 @@ Kinase profiling is an efficient strategy for kinase inhibitor discovery, polyph
     sc:url "http://prowl.rockefeller.edu/prowl-cgi/profound.exe" .
 
 <https://bio.tools/profppikernel> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0128,
@@ -380586,10 +400432,10 @@ Kinase profiling is an efficient strategy for kinase inhibitor discovery, polyph
 
 <https://bio.tools/profsec> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2974" ;
-            sc:name "Protein sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_2974" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2974" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence (raw)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_1317 ;
     sc:author "Burkhard Rost" ;
@@ -380608,14 +400454,14 @@ Kinase profiling is an efficient strategy for kinase inhibitor discovery, polyph
 
 <https://bio.tools/proftmb> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2974" ;
-            sc:name "Protein sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_2974" ] ;
+            sc:additionalType "http://edamontology.org/data_2974" ;
+            sc:encodingFormat "http://edamontology.org/format_2200" ;
+            sc:name "Protein sequence (raw)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0896" ;
-            sc:name "Protein report" ;
-            sc:sameAs "http://edamontology.org/data_0896" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0896" ;
+            sc:encodingFormat "http://edamontology.org/format_1920" ;
+            sc:name "Protein report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
@@ -380644,7 +400490,7 @@ Kinase profiling is an efficient strategy for kinase inhibitor discovery, polyph
     sc:url "http://ppopen.informatik.tu-muenchen.de/" .
 
 <https://bio.tools/profumo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0769,
         edam:topic_3444 ;
@@ -380660,14 +400506,13 @@ Recent work has highlighted the scale and ubiquity of subject variability in obs
 
 <https://bio.tools/profunc> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ] ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein structure" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1537" ;
-            sc:name "Protein structure report" ;
-            sc:sameAs "http://edamontology.org/data_1537" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1537" ;
+            sc:name "Protein structure report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_1775,
         edam:topic_2814 ;
@@ -380689,7 +400534,7 @@ Recent work has highlighted the scale and ubiquity of subject variability in obs
     biotools:primaryContact "Roman Laskowski" .
 
 <https://bio.tools/progem> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0153,
         edam:topic_0203,
@@ -380714,14 +400559,13 @@ knitr::opts_chunk$set(echo = FALSE).""" ;
 
 <https://bio.tools/progenetix> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ] ;
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:name "Sequence variations" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3604" ;
+            sc:name "Image" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0622,
@@ -380746,7 +400590,7 @@ knitr::opts_chunk$set(echo = FALSE).""" ;
     biotools:primaryContact <https://orcid.org/0000-0002-9903-4248> .
 
 <https://bio.tools/progenomes> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0219,
         edam:topic_0622,
@@ -380773,7 +400617,7 @@ knitr::opts_chunk$set(echo = FALSE).""" ;
         <https://orcid.org/0000-0003-1429-7485> .
 
 <https://bio.tools/progeny> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0204,
@@ -380797,7 +400641,7 @@ knitr::opts_chunk$set(echo = FALSE).""" ;
     biotools:primaryContact <https://orcid.org/0000-0002-6862-5221> .
 
 <https://bio.tools/proglycprot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0621,
@@ -380817,8 +400661,24 @@ knitr::opts_chunk$set(echo = FALSE).""" ;
     sc:url "http://www.proglycprot.org/" ;
     biotools:primaryContact "Dr. Alka Rao" .
 
+<https://bio.tools/proglycprot_prokaryotic_glycoproteins> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:citation <https://doi.org/10.1093/nar/gkr911>,
+        "pmcid:PMC3245024",
+        "pubmed:22039152" ;
+    sc:description "ProGlycProt (Prokaryotic Glycoproteins) is a manually curated, comprehensive repository of experimentally characterized eubacterial and archaeal glycoproteins, generated from an exhaustive literature search." ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "proglycprot (Prokaryotic Glycoproteins)" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/proglycprot/> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/proglycprot/" .
+
 <https://bio.tools/progmap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0102,
@@ -380834,7 +400694,7 @@ knitr::opts_chunk$set(echo = FALSE).""" ;
     sc:url "http://www.bioinformatics.nl/progmap" .
 
 <https://bio.tools/prognoscan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0634,
@@ -380853,8 +400713,31 @@ knitr::opts_chunk$set(echo = FALSE).""" ;
     sc:url "http://www.prognoscan.org/" ;
     biotools:primaryContact "Hideaki Mizuno" .
 
+<https://bio.tools/prognosit> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0602,
+        edam:topic_2640,
+        edam:topic_3173,
+        edam:topic_3360,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1186/S12859-021-04460-6>,
+        "pmcid:PMC8561914",
+        "pubmed:34727887" ;
+    sc:description "Pathway/gene set-based tumour volume prediction using multiple kernel learning." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_3659,
+        edam:operation_3928 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "PrognosiT" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/begumbektas/prognosit" .
+
 <https://bio.tools/progperm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0621,
@@ -380873,7 +400756,7 @@ knitr::opts_chunk$set(echo = FALSE).""" ;
     biotools:primaryContact <https://orcid.org/0000-0001-5986-2260> .
 
 <https://bio.tools/prohits> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -380888,14 +400771,14 @@ knitr::opts_chunk$set(echo = FALSE).""" ;
 
 <https://bio.tools/prohits-viz> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0905" ;
-            sc:name "Protein interaction raw data" ;
-            sc:sameAs "http://edamontology.org/data_0905" ] ;
+            sc:additionalType "http://edamontology.org/data_0905" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Protein interaction raw data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Image" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -380916,7 +400799,7 @@ knitr::opts_chunk$set(echo = FALSE).""" ;
     biotools:primaryContact "James D R Knight" .
 
 <https://bio.tools/proin-fuse> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3300,
         edam:topic_3400,
@@ -380938,7 +400821,7 @@ Please be patient after submitting and do not close this page.""" ;
     sc:url "http://kurata14.bio.kyutech.ac.jp/ProIn-Fuse" .
 
 <https://bio.tools/proinflam> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_3510 ;
@@ -380955,7 +400838,7 @@ Please be patient after submitting and do not close this page.""" ;
     sc:url "http://metabiosys.iiserb.ac.in/proinflam/index.html" .
 
 <https://bio.tools/project> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0077 ;
     sc:author "Sarah Djebali" ;
@@ -380973,7 +400856,7 @@ Please be patient after submitting and do not close this page.""" ;
     biotools:primaryContact "Sarah Djebali" .
 
 <https://bio.tools/projectR> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3308,
         edam:topic_3474 ;
@@ -380986,7 +400869,7 @@ Please be patient after submitting and do not close this page.""" ;
     sc:url "https://github.com/genesofeve/projectR" .
 
 <https://bio.tools/projector_2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
@@ -381009,14 +400892,14 @@ Please be patient after submitting and do not close this page.""" ;
 
 <https://bio.tools/prokaryote-rnaseq> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1932" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Gene expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Gene expression data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_3047,
         edam:topic_3297 ;
@@ -381035,24 +400918,31 @@ Please be patient after submitting and do not close this page.""" ;
         "Erik Hjerde" .
 
 <https://bio.tools/prokevo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_3301,
         edam:topic_3305,
         edam:topic_3673,
         edam:topic_3796 ;
-    sc:citation <https://doi.org/10.1101/2020.10.13.336479> ;
-    sc:description "an automated, reproducible, and scalable framework for high-throughput bacterial population genomics analyses." ;
+    sc:citation <https://doi.org/10.7717/peerj.11376>,
+        "pmcid:PMC8142932",
+        "pubmed:34055480" ;
+    sc:description "An automated, reproducible, and scalable framework for high-throughput bacterial population genomics analyses." ;
     sc:featureList edam:operation_3192,
         edam:operation_3359,
         edam:operation_3644,
         edam:operation_3840 ;
+    sc:isAccessibleForFree true ;
     sc:license "GPL-3.0" ;
     sc:name "ProkEvo" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
     sc:url "https://github.com/npavlovikj/ProkEvo" .
 
 <https://bio.tools/prokka> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0622,
@@ -381075,8 +400965,29 @@ Please be patient after submitting and do not close this page.""" ;
     biotools:primaryContact "Australia",
         "Torsten Seemann" .
 
+<https://bio.tools/prokounter> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0659,
+        edam:topic_3174,
+        edam:topic_3697 ;
+    sc:citation <https://doi.org/10.1186/S13059-022-02722-X>,
+        "pmcid:PMC9344657",
+        "pubmed:35915508" ;
+    sc:description "Differential richness inference for 16S rRNA marker gene surveys." ;
+    sc:featureList edam:operation_3196,
+        edam:operation_3659,
+        edam:operation_3797 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "Prokounter" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/mskb01/prokounter" .
+
 <https://bio.tools/prokseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
         edam:topic_0769,
@@ -381097,7 +401008,7 @@ conda install -c snandids prokseq.""" ;
     sc:url "https://anaconda.org/snandiDS/prokseq" .
 
 <https://bio.tools/prokware> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0166,
@@ -381121,14 +401032,14 @@ conda install -c snandids prokseq.""" ;
 
 <https://bio.tools/prolic> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Protein sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0850" ;
-            sc:name "Sequence set" ;
-            sc:sameAs "http://edamontology.org/data_0850" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0850" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Sequence set" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121 ;
     sc:author "Dr. Michael Kohl" ;
@@ -381144,7 +401055,7 @@ In addition to a simple accession based comparison, ProLiC permits a more reliab
     biotools:primaryContact "PD Dr. Martin Eisenacher" .
 
 <https://bio.tools/prolif> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0176,
@@ -381170,7 +401081,7 @@ In addition to a simple accession based comparison, ProLiC permits a more reliab
     sc:url "https://github.com/chemosim-lab/ProLIF" .
 
 <https://bio.tools/prolific> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0128 ;
     sc:description "One-step solution to investigate available information on given protein names, sequences, similar proteins or sequences on the gene level." ;
@@ -381181,7 +401092,7 @@ In addition to a simple accession based comparison, ProLiC permits a more reliab
     sc:url "http://www.pharmaceutical-bioinformatics.de/prolific/184/" .
 
 <https://bio.tools/proline> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -381204,7 +401115,7 @@ In addition to a simple accession based comparison, ProLiC permits a more reliab
     biotools:primaryContact "Christophe Bruley" .
 
 <https://bio.tools/prolint> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0153,
@@ -381226,7 +401137,7 @@ prolintpy is a lightweight python library that is used by the ProLint webserver
         <https://orcid.org/0000-0002-9913-4994> .
 
 <https://bio.tools/proloc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -381248,7 +401159,7 @@ prolintpy is a lightweight python library that is used by the ProLint webserver
     biotools:primaryContact <http://orcid.org/0000-0002-1520-2268> .
 
 <https://bio.tools/proloc-go> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0089 ;
     sc:citation <https://doi.org/10.1186/1471-2105-9-80> ;
@@ -381262,7 +401173,7 @@ prolintpy is a lightweight python library that is used by the ProLint webserver
     sc:url "http://140.113.239.45/prolocgo/" .
 
 <https://bio.tools/prolocgui> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0121 ;
@@ -381281,7 +401192,7 @@ prolintpy is a lightweight python library that is used by the ProLint webserver
         "Lisa M Breckels" .
 
 <https://bio.tools/prom> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2259,
@@ -381299,7 +401210,7 @@ prolintpy is a lightweight python library that is used by the ProLint webserver
     sc:url "https://price.systemsbiology.org/research/prom/" .
 
 <https://bio.tools/promad> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0203,
         edam:topic_0821,
@@ -381323,7 +401234,7 @@ You can also install the latest version directly from GitHub.""" ;
     sc:url "https://promad.dev" .
 
 <https://bio.tools/promals3d> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -381346,7 +401257,7 @@ You can also install the latest version directly from GitHub.""" ;
     biotools:primaryContact "PROMALS3D Support" .
 
 <https://bio.tools/promateus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0749,
@@ -381372,7 +401283,7 @@ You can also install the latest version directly from GitHub.""" ;
         "Mati Cohen" .
 
 <https://bio.tools/promaya> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0130,
         edam:topic_1317,
@@ -381392,22 +401303,22 @@ You can also install the latest version directly from GitHub.""" ;
 
 <https://bio.tools/promex> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ],
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3654" ;
+            sc:name "Mass spectrometry spectra" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_2571" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ],
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_3603" ;
+            sc:name "Peptide identification" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3603" ;
+            sc:name "Mass spectrometry spectra" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0780,
@@ -381428,7 +401339,7 @@ You can also install the latest version directly from GitHub.""" ;
     biotools:primaryContact "Dr. V. Egelhofer" .
 
 <https://bio.tools/promfd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0099,
@@ -381443,8 +401354,30 @@ You can also install the latest version directly from GitHub.""" ;
     sc:softwareHelp <http://stormo.wustl.edu/src/PromFD/> ;
     sc:url "http://stormo.wustl.edu/src/PromFD/" .
 
+<https://bio.tools/promge> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0084,
+        edam:topic_0102,
+        edam:topic_0622,
+        edam:topic_0749,
+        edam:topic_0798 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAC163>,
+        "pmcid:PMC8989519",
+        "pubmed:35323968" ;
+    sc:description "proMGE is a resource for the retrieval of 6 Mobile Genetic Element (MGE) categories in 76K genomes (totalling to 2.4 million prokaryotic MGEs) and classification of new ones in user provided protein sequences from genomes and genomic fragments." ;
+    sc:featureList edam:operation_3208,
+        edam:operation_3482,
+        edam:operation_3501 ;
+    sc:license "Not licensed" ;
+    sc:name "proMGE" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://promge.embl.de/" .
+
 <https://bio.tools/promh> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0749,
@@ -381466,7 +401399,7 @@ You can also install the latest version directly from GitHub.""" ;
     biotools:primaryContact "Victor V. Solovyev" .
 
 <https://bio.tools/promintools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
         edam:topic_0154,
@@ -381484,7 +401417,7 @@ This is the project page for ProminTools: a collection of bioinformatic tools fo
     sc:url "https://github.com/skeffington/Promin-tools" .
 
 <https://bio.tools/promiscuous> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0154,
@@ -381507,7 +401440,7 @@ This is the project page for ProminTools: a collection of bioinformatic tools fo
         "Robert Preissner" .
 
 <https://bio.tools/promise> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0622 ;
@@ -381526,7 +401459,7 @@ This is the project page for ProminTools: a collection of bioinformatic tools fo
         "Xueyuan Cao" .
 
 <https://bio.tools/promisec_endpoint_manager> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:description "Agentless technology to quickly and remotely inspect yan organisations endpoint environment to discover, analyze, and remediate any abnormalities that then in turn lead to failed audits and uncorrect business intelligence." ;
@@ -381538,8 +401471,31 @@ This is the project page for ProminTools: a collection of bioinformatic tools fo
     sc:url "https://www.promisec.com/products/#pem" ;
     biotools:primaryContact "promisec contact form" .
 
+<https://bio.tools/promised> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0121,
+        edam:topic_0154,
+        edam:topic_0780,
+        edam:topic_3172,
+        edam:topic_3520 ;
+    sc:citation <https://doi.org/10.1016/J.CSBJ.2021.08.042>,
+        "pmcid:PMC8453180",
+        "pubmed:34589187" ;
+    sc:description "A novel web-based tool to facilitate analysis and visualization of the molecular interaction networks from co-fractionation mass spectrometry (CF-MS) experiments." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3629,
+        edam:operation_3767 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "PROMISed" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://myshiny.mpimp-golm.mpg.de/PDP1/" .
+
 <https://bio.tools/promk> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0123 ;
@@ -381554,7 +401510,7 @@ This is the project page for ProminTools: a collection of bioinformatic tools fo
     sc:url "https://sites.google.com/site/guoxian85/home/promk" .
 
 <https://bio.tools/promocell> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0128,
@@ -381570,7 +401526,7 @@ This is the project page for ProminTools: a collection of bioinformatic tools fo
     sc:url "https://cosmos.iitkgp.ac.in/ProMoCell" .
 
 <https://bio.tools/promod3> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0769,
@@ -381591,7 +401547,7 @@ ProMod3 is a modelling engine based on the OpenStructure [biasini2013] computati
     sc:url "https://openstructure.org/promod3/" .
 
 <https://bio.tools/promodb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0128,
@@ -381608,7 +401564,7 @@ ProMod3 is a modelling engine based on the OpenStructure [biasini2013] computati
     biotools:primaryContact "Barnali Das" .
 
 <https://bio.tools/promoser> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0102,
@@ -381630,7 +401586,7 @@ ProMod3 is a modelling engine based on the OpenStructure [biasini2013] computati
     biotools:primaryContact "PromoSer Team" .
 
 <https://bio.tools/promost> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0176,
@@ -381651,16 +401607,39 @@ ProMod3 is a modelling engine based on the OpenStructure [biasini2013] computati
     sc:url "http://proteomics.mcw.edu/promost.html" ;
     biotools:primaryContact "PrpMoST Support" .
 
+<https://bio.tools/promotech> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0091,
+        edam:topic_0749,
+        edam:topic_3168,
+        edam:topic_3301,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1186/S13059-021-02514-9>,
+        "pmcid:PMC8597233",
+        "pubmed:34789306" ;
+    sc:description "Machine-learning-based general bacterial promoter prediction tool." ;
+    sc:featureList edam:operation_0440,
+        edam:operation_3359,
+        edam:operation_3927 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "Promotech" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/BioinformaticsLabAtMUN/PromoTech" .
+
 <https://bio.tools/promoter> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Protein features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_3511 ;
@@ -381680,7 +401659,7 @@ ProMod3 is a modelling engine based on the OpenStructure [biasini2013] computati
     sc:url "http://cbs.dtu.dk/services/Promoter/" .
 
 <https://bio.tools/promotercad> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0654,
@@ -381702,7 +401681,7 @@ ProMod3 is a modelling engine based on the OpenStructure [biasini2013] computati
     biotools:primaryContact "PromoterCAD Support" .
 
 <https://bio.tools/promoterplot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0621,
@@ -381715,14 +401694,12 @@ ProMod3 is a modelling engine based on the OpenStructure [biasini2013] computati
 
 <https://bio.tools/promoterwise> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3494" ;
-            sc:name "DNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3494" ] ;
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:name "DNA sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1381" ;
-            sc:name "Sequence alignment (pair)" ;
-            sc:sameAs "http://edamontology.org/data_1381" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1381" ;
+            sc:name "Sequence alignment (pair)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0749 ;
@@ -381744,7 +401721,7 @@ ProMod3 is a modelling engine based on the OpenStructure [biasini2013] computati
     biotools:primaryContact "Web Production" .
 
 <https://bio.tools/prompredict> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0654,
@@ -381760,7 +401737,7 @@ ProMod3 is a modelling engine based on the OpenStructure [biasini2013] computati
     sc:url "http://nucleix.mbu.iisc.ernet.in/prompredict/prompredict.html" .
 
 <https://bio.tools/prompt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0102 ;
     sc:citation <https://doi.org/10.1186/1471-2105-7-331> ;
@@ -381779,7 +401756,7 @@ ProMod3 is a modelling engine based on the OpenStructure [biasini2013] computati
     sc:url "http://www.geneinfo.eu/prompt/" .
 
 <https://bio.tools/prompt-protein> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0091,
@@ -381799,7 +401776,7 @@ ProMod3 is a modelling engine based on the OpenStructure [biasini2013] computati
     biotools:primaryContact "Gaik Tamazian" .
 
 <https://bio.tools/proms> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
         edam:topic_3170,
@@ -381818,7 +401795,7 @@ ProMod3 is a modelling engine based on the OpenStructure [biasini2013] computati
     biotools:primaryContact "Bing Zhang" .
 
 <https://bio.tools/promzea> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_0780,
@@ -381837,8 +401814,33 @@ ProMod3 is a modelling engine based on the OpenStructure [biasini2013] computati
     biotools:primaryContact "Christophe Liseron-Monfils",
         "Manish Raizada" .
 
+<https://bio.tools/pronab> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0097,
+        edam:topic_0099,
+        edam:topic_0128,
+        edam:topic_0199,
+        edam:topic_3511 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAB848>,
+        "pmcid:PMC8728258",
+        "pubmed:34606614" ;
+    sc:description "Database for binding affinities of protein-nucleic acid complexes and their mutants." ;
+    sc:featureList edam:operation_0478,
+        edam:operation_2421,
+        edam:operation_3802,
+        edam:operation_3900,
+        edam:operation_4009 ;
+    sc:isAccessibleForFree true ;
+    sc:name "ProNAB" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://web.iitm.ac.in/bioinfo2/pronab/" .
+
 <https://bio.tools/pronetview-ccrcc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0602,
         edam:topic_2229,
@@ -381861,7 +401863,7 @@ Co-expression network was constructed based on phospho-peptide data of 103 Clear
     sc:url "http://ccrcc.cptac-network-view.org/" .
 
 <https://bio.tools/pronoi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0092,
@@ -381875,7 +401877,7 @@ Co-expression network was constructed based on phospho-peptide data of 103 Clear
     sc:url "http://compbio.clemson.edu/pronoi" .
 
 <https://bio.tools/proovframe> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
@@ -381895,7 +401897,7 @@ Co-expression network was constructed based on phospho-peptide data of 103 Clear
     sc:url "https://github.com/thackl/proovframe" .
 
 <https://bio.tools/proovread> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3168,
@@ -381911,14 +401913,14 @@ Co-expression network was constructed based on phospho-peptide data of 103 Clear
 
 <https://bio.tools/prop> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2955" ;
-            sc:name "Sequence report" ;
-            sc:sameAs "http://edamontology.org/data_2955" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2955" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Sequence report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application",
         "Web service" ;
@@ -381939,7 +401941,7 @@ Co-expression network was constructed based on phospho-peptide data of 103 Clear
     sc:url "http://cbs.dtu.dk/services/ProP/" .
 
 <https://bio.tools/propagate> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_3174,
@@ -381956,7 +401958,7 @@ PropagAtE (Prophage Activity Estimator) uses genomic coordinates of integrated p
     sc:url "https://github.com/AnantharamanLab/PropagAtE" .
 
 <https://bio.tools/propas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0078,
@@ -381973,7 +401975,7 @@ PropagAtE (Prophage Activity Estimator) uses genomic coordinates of integrated p
     sc:url "http://bioinfo.hupo.org.cn/tools/ProPAS/propas.htm" .
 
 <https://bio.tools/propedia> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0121,
@@ -381995,7 +401997,7 @@ PROPEDIA is a database of peptide-protein complexes clusterized in three methodo
     sc:url "https://bioinfo.dcc.ufmg.br/propedia" .
 
 <https://bio.tools/proper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3170 ;
@@ -382015,7 +402017,7 @@ PROPEDIA is a database of peptide-protein complexes clusterized in three methodo
     biotools:primaryContact "Hao Wu" .
 
 <https://bio.tools/propgap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3168,
@@ -382034,14 +402036,12 @@ PROPEDIA is a database of peptide-protein complexes clusterized in three methodo
 
 <https://bio.tools/prophecy> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0968" ;
-            sc:name "Keyword" ;
-            sc:sameAs "http://edamontology.org/data_0968" ] ;
+            sc:additionalType "http://edamontology.org/data_0968" ;
+            sc:name "Keyword" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2337" ;
-            sc:name "Resource metadata" ;
-            sc:sameAs "http://edamontology.org/data_2337" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2337" ;
+            sc:name "Resource metadata" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_3298 ;
     sc:citation <https://doi.org/10.1093/nar/gkl1029> ;
@@ -382057,18 +402057,15 @@ PROPEDIA is a database of peptide-protein complexes clusterized in three methodo
 
 <https://bio.tools/prophet> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1354" ;
-            sc:name "Sequence profile" ;
-            sc:sameAs "http://edamontology.org/data_1354" ],
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
+            sc:additionalType "http://edamontology.org/data_1354" ;
+            sc:name "Sequence profile" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:name "Sequence alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0160 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -382098,7 +402095,7 @@ PROPEDIA is a database of peptide-protein complexes clusterized in three methodo
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/prophet.html" .
 
 <https://bio.tools/prophet-prophage> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0621,
         edam:topic_0622,
@@ -382115,7 +402112,7 @@ PROPEDIA is a database of peptide-protein complexes clusterized in three methodo
     sc:url "https://github.com/jaumlrc/ProphET" .
 
 <https://bio.tools/prophtools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0634,
@@ -382132,7 +402129,7 @@ PROPEDIA is a database of peptide-protein complexes clusterized in three methodo
     biotools:primaryContact "Carmen Navarro" .
 
 <https://bio.tools/propores> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0166,
@@ -382147,7 +402144,7 @@ PROPEDIA is a database of peptide-protein complexes clusterized in three methodo
     biotools:primaryContact "Po-Hsien Lee" .
 
 <https://bio.tools/propores2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
@@ -382165,7 +402162,7 @@ PROPEDIA is a database of peptide-protein complexes clusterized in three methodo
     biotools:primaryContact <https://orcid.org/0000-0002-2180-9154> .
 
 <https://bio.tools/proportal> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0622,
@@ -382183,7 +402180,7 @@ PROPEDIA is a database of peptide-protein complexes clusterized in three methodo
     biotools:primaryContact "ProPortal Support" .
 
 <https://bio.tools/propr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3169,
@@ -382203,10 +402200,9 @@ PROPEDIA is a database of peptide-protein complexes clusterized in three methodo
     biotools:primaryContact "Thomas Quinn" .
 
 <https://bio.tools/propred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
-    sc:applicationSubCategory edam:topic_2830,
-        edam:topic_3125,
+    sc:applicationSubCategory edam:topic_3125,
         edam:topic_3511,
         edam:topic_3534 ;
     sc:citation "pubmed:11751237" ;
@@ -382220,14 +402216,13 @@ PROPEDIA is a database of peptide-protein complexes clusterized in three methodo
         "Mac",
         "Windows" ;
     sc:softwareHelp <http://crdd.osdd.net/raghava/propred/page3.html> ;
-    sc:url "http://www.imtech.res.in/raghava/propred/" ;
+    sc:url "http://webs.iiitd.edu.in/raghava/propred/" ;
     biotools:primaryContact "Dr. G. P. S. Raghava" .
 
 <https://bio.tools/propred1> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
-    sc:applicationSubCategory edam:topic_2830,
-        edam:topic_3510,
+    sc:applicationSubCategory edam:topic_3510,
         edam:topic_3534 ;
     sc:citation "pubmed:12761064" ;
     sc:description "Online service for identifying the MHC Class-I binding regions in antigens. It implements matrices for 47 MHC Class-I alleles, proteasomal and immunoproteasomal models. The main aim of this server is to help users in identifying the promiscuous regions." ;
@@ -382240,10 +402235,25 @@ PROPEDIA is a database of peptide-protein complexes clusterized in three methodo
         "Mac",
         "Windows" ;
     sc:softwareHelp <http://crdd.osdd.net/raghava//propred1/page2.html> ;
-    sc:url "http://www.imtech.res.in/raghava/propred1/" .
+    sc:url "http://webs.iiitd.edu.in/raghava/propred1/" .
+
+<https://bio.tools/proprint> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:citation <https://doi.org/10.2174/138920310794109120>,
+        "pubmed:20887258" ;
+    sc:description "Proprint web-server predicts physical or functional interactions between protein molecules." ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "proprint" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/proprint/index.html> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/proprint/index.html" .
 
 <https://bio.tools/props> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -382264,7 +402274,7 @@ PROPEDIA is a database of peptide-protein complexes clusterized in three methodo
     biotools:primaryContact "Lichy Han" .
 
 <https://bio.tools/propsearch> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_1775 ;
     sc:citation <https://doi.org/10.1006/jmbi.1995.0442> ;
@@ -382283,14 +402293,12 @@ PROPEDIA is a database of peptide-protein complexes clusterized in three methodo
 
 <https://bio.tools/proq> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0883" ;
-            sc:name "Structure" ;
-            sc:sameAs "http://edamontology.org/data_0883" ] ;
+            sc:additionalType "http://edamontology.org/data_0883" ;
+            sc:name "Structure" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1772" ;
-            sc:name "Score" ;
-            sc:sameAs "http://edamontology.org/data_1772" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1772" ;
+            sc:name "Score" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0081 ;
@@ -382308,7 +402316,7 @@ PROPEDIA is a database of peptide-protein complexes clusterized in three methodo
     biotools:primaryContact "Bjorn Wallner" .
 
 <https://bio.tools/proq2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0123,
@@ -382325,7 +402333,7 @@ PROPEDIA is a database of peptide-protein complexes clusterized in three methodo
     sc:url "http://bioinfo.ifm.liu.se/ProQ2/" .
 
 <https://bio.tools/proq3d> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_2275,
         edam:topic_3168 ;
@@ -382343,38 +402351,38 @@ ProQ3/ProQ3D: Improved model quality assessment.""" ;
 
 <https://bio.tools/prorata> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ],
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Peptide identification" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2886" ;
-            sc:name "Protein sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2886" ],
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Peptide identification" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ],
+            sc:additionalType "http://edamontology.org/data_2886" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence record" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2886" ;
-            sc:name "Protein sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2886" ],
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3654" ;
+            sc:name "Mass spectrometry spectra" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ],
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3654" ;
+            sc:name "Mass spectrometry spectra" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ] ;
+            sc:additionalType "http://edamontology.org/data_2886" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ],
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Expression data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Expression data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_2269,
@@ -382397,7 +402405,7 @@ ProQ3/ProQ3D: Improved model quality assessment.""" ;
     sc:url "https://code.google.com/archive/p/prorata/" .
 
 <https://bio.tools/prorate> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0130 ;
     sc:citation <https://doi.org/10.2197/ipsjtbio.3.40> ;
@@ -382411,7 +402419,7 @@ ProQ3/ProQ3D: Improved model quality assessment.""" ;
     sc:url "http://sunflower.kuicr.kyoto-u.ac.jp/~sjn/folding/" .
 
 <https://bio.tools/prorepeat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -382431,8 +402439,28 @@ ProQ3/ProQ3D: Improved model quality assessment.""" ;
     sc:url "http://prorepeat.bioinformatics.nl:443/dev/f?p=131:1:3958512077619968" ;
     biotools:primaryContact "Jack A. M. Leunissen" .
 
+<https://bio.tools/pros-gnn> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0130,
+        edam:topic_0199,
+        edam:topic_3318,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1101/2021.10.25.465658> ;
+    sc:description "Predicting effects of mutations on protein stability using graph neural networks." ;
+    sc:featureList edam:operation_0331,
+        edam:operation_2476,
+        edam:operation_3927 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "ProS-GNN" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/shuyu-wang/ProS-GNN" .
+
 <https://bio.tools/prosa-web> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0130,
@@ -382453,8 +402481,31 @@ ProQ3/ProQ3D: Improved model quality assessment.""" ;
         "Windows" ;
     sc:url "https://prosa.services.came.sbg.ac.at/prosa.php" .
 
+<https://bio.tools/prosap> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0080,
+        edam:topic_0121,
+        edam:topic_0130,
+        edam:topic_0154,
+        edam:topic_3520 ;
+    sc:citation <https://doi.org/10.1093/BIB/BBAC057>,
+        "pubmed:35246677" ;
+    sc:description "ProSAP (Protein Stability Analysis Pod) is standalone and user-friendly software with graphical user interface (GUI). ProSAP provides an integrated analysis workflow for thermal shift assay, which includes five modules: data preprocessing, data visualization, TPP analysis, NPARC analysis and iTSA analysis. With the assistance of the user-friendly interface, researchers can easily compare several statistical strategies, analyze the results and draw the conclusion from the proteomics quantitative table obtained by Proteome Discoverer or MaxQuant. Users would also benefit from a comprehensive overview of the performance of different algorithms, and apply appropriate algorithms to their dataset easily." ;
+    sc:featureList edam:operation_2939,
+        edam:operation_3435,
+        edam:operation_3557,
+        edam:operation_3891 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "ProSAP" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/hcji/ProSAP" .
+
 <https://bio.tools/prosat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0219,
@@ -382471,7 +402522,7 @@ ProQ3/ProQ3D: Improved model quality assessment.""" ;
     sc:url "http://prosat.h-its.org/" .
 
 <https://bio.tools/prosat2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -382494,8 +402545,30 @@ ProQ3/ProQ3D: Improved model quality assessment.""" ;
     sc:url "http://projects.villa-bosch.de/dbase/ps2/" ;
     biotools:primaryContact "Support" .
 
+<https://bio.tools/prose> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0080,
+        edam:topic_0121,
+        edam:topic_0625,
+        edam:topic_2640,
+        edam:topic_3520 ;
+    sc:citation <https://doi.org/10.1101/2021.11.13.468488> ;
+    sc:description "Single-sample proteome enrichment enables missing protein recovery and phenotype association." ;
+    sc:featureList edam:operation_3463,
+        edam:operation_3501,
+        edam:operation_3557,
+        edam:operation_3767 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "PROSE" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/bwbio/PROSE" .
+
 <https://bio.tools/proseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0196,
@@ -382513,8 +402586,28 @@ ProQ3/ProQ3D: Improved model quality assessment.""" ;
     sc:softwareVersion "3.5" ;
     sc:url "http://dps.plants.ox.ac.uk/sequencing/proseq.htm" .
 
+<https://bio.tools/proseqviewer> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0080,
+        edam:topic_0081,
+        edam:topic_0199 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAB764>,
+        "pubmed:34788797" ;
+    sc:description "An interactive, responsive and efficient TypeScript library for visualization of sequences and alignments in web applications." ;
+    sc:featureList edam:operation_0259,
+        edam:operation_0492,
+        edam:operation_0564 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-2.0" ;
+    sc:name "ProSeqViewer" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://biocomputingup.github.io/ProSeqViewer-documentation/" .
+
 <https://bio.tools/prosess> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0593,
@@ -382547,7 +402640,7 @@ ProQ3/ProQ3D: Improved model quality assessment.""" ;
         "You Zhou" .
 
 <https://bio.tools/prosettac> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0154,
         edam:topic_0202,
@@ -382575,10 +402668,9 @@ to /etc/pbs.conf (on all cluster nodes). Another option is to write this line to
 
 <https://bio.tools/prosextract> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1353" ;
-            sc:name "Sequence motif" ;
-            sc:sameAs "http://edamontology.org/data_1353" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1353" ;
+            sc:name "Sequence motif" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0160 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -382607,28 +402699,46 @@ to /etc/pbs.conf (on all cluster nodes). Another option is to write this line to
     sc:softwareVersion "r6" ;
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/prosextract.html" .
 
+<https://bio.tools/prosgpv> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_2269 ;
+    sc:citation <https://doi.org/10.12688/F1000RESEARCH.74401.1> ;
+    sc:description "An R package for variable selection with second-generation p-values." ;
+    sc:featureList edam:operation_3658,
+        edam:operation_3659,
+        edam:operation_3936 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "ProSGPV" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://cran.r-project.org/web/packages/ProSGPV/ProSGPV.pdf> ;
+    sc:url "https://cran.r-project.org/web/packages/ProSGPV/index.html" .
+
 <https://bio.tools/prosight_lite> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ],
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Mass spectrometry data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ],
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Protein sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3021" ;
-            sc:name "UniProt accession" ;
-            sc:sameAs "http://edamontology.org/data_3021" ] ;
+            sc:additionalType "http://edamontology.org/data_3021" ;
+            sc:encodingFormat "http://edamontology.org/format_1963" ;
+            sc:name "UniProt accession" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2969" ;
-            sc:name "Sequence image" ;
-            sc:sameAs "http://edamontology.org/data_2969" ],
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Mass spectrometry data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2969" ;
+            sc:encodingFormat "http://edamontology.org/format_3604" ;
+            sc:name "Sequence image" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -382653,30 +402763,30 @@ to /etc/pbs.conf (on all cluster nodes). Another option is to write this line to
 
 <https://bio.tools/prosight_ptm> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ],
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:encodingFormat "http://edamontology.org/format_3653" ;
+            sc:name "Mass spectrometry data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ],
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:encodingFormat "http://edamontology.org/format_3653" ;
+            sc:name "Mass spectrometry data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ] ;
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:encodingFormat "http://edamontology.org/format_3245" ;
+            sc:name "Mass spectrometry data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ],
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:encodingFormat "http://edamontology.org/format_3653" ;
+            sc:name "Mass spectrometry data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ],
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_2062" ;
+            sc:name "Peptide identification" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:encodingFormat "http://edamontology.org/format_2062" ;
+            sc:name "Protein features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0601,
@@ -382702,14 +402812,14 @@ to /etc/pbs.conf (on all cluster nodes). Another option is to write this line to
 
 <https://bio.tools/prosight_ptm_ion_predictor> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0844" ;
-            sc:name "Molecular mass" ;
-            sc:sameAs "http://edamontology.org/data_0844" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0844" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Molecular mass" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0601,
@@ -382725,7 +402835,7 @@ to /etc/pbs.conf (on all cluster nodes). Another option is to write this line to
     sc:url "https://prosightptm.northwestern.edu/ionpredictor" .
 
 <https://bio.tools/prosite> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0160,
@@ -382750,18 +402860,15 @@ to /etc/pbs.conf (on all cluster nodes). Another option is to write this line to
 
 <https://bio.tools/prosite_scan_ebi> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:name "Protein sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ],
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:name "Protein features" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0858" ;
-            sc:name "Sequence signature matches" ;
-            sc:sameAs "http://edamontology.org/data_0858" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0858" ;
+            sc:name "Sequence signature matches" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0160 ;
@@ -382783,7 +402890,7 @@ to /etc/pbs.conf (on all cluster nodes). Another option is to write this line to
     biotools:primaryContact "Web Production" .
 
 <https://bio.tools/prosmos> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0166,
@@ -382806,7 +402913,7 @@ to /etc/pbs.conf (on all cluster nodes). Another option is to write this line to
     biotools:primaryContact "Shuoyong Shi" .
 
 <https://bio.tools/prosolo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0625,
         edam:topic_0769,
@@ -382828,14 +402935,12 @@ ProSolo is a variant caller for multiple displacement amplified DNA sequencing d
 
 <https://bio.tools/prosom> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ] ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:name "Nucleic acid sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2070" ;
-            sc:name "Sequence motif (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_2070" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2070" ;
+            sc:name "Sequence motif (nucleic acid)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3511 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btn172> ;
@@ -382851,7 +402956,7 @@ ProSolo is a variant caller for multiple displacement amplified DNA sequencing d
     sc:url "http://bioinformatics.psb.ugent.be/software/details/ProSOM" .
 
 <https://bio.tools/prospect> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_3071 ;
@@ -382868,7 +402973,7 @@ ProSolo is a variant caller for multiple displacement amplified DNA sequencing d
     biotools:primaryContact "Yudi Pawitan" .
 
 <https://bio.tools/prospect-pspp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -382884,7 +402989,7 @@ ProSolo is a variant caller for multiple displacement amplified DNA sequencing d
     sc:url "http://csbl.bmb.uga.edu/protein_pipeline" .
 
 <https://bio.tools/prospect-web> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0602,
         edam:topic_3407,
@@ -382900,7 +403005,7 @@ Background: Phosphorylation of histidine residues plays crucial roles in signali
     sc:url "http://PROSPECT.erc.monash.edu/" .
 
 <https://bio.tools/prospectr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0602,
@@ -382922,7 +403027,7 @@ Background: Phosphorylation of histidine residues plays crucial roles in signali
     biotools:primaryContact "IGMM Admin Hub" .
 
 <https://bio.tools/prosplicer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_3120,
@@ -382943,7 +403048,7 @@ Background: Phosphorylation of histidine residues plays crucial roles in signali
     biotools:primaryContact "ProSplicer Support" .
 
 <https://bio.tools/prosregnet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3384,
@@ -382960,7 +403065,7 @@ Background: Phosphorylation of histidine residues plays crucial roles in signali
     sc:url "https://github.com/pimed//ProsRegNet" .
 
 <https://bio.tools/pross> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0130,
         edam:topic_0199,
         edam:topic_0203,
@@ -382981,8 +403086,30 @@ Well, I've seen too many dumb errors with processing PROSS results and gene orde
     sc:name "PROSS" ;
     sc:url "https://pross.weizmann.ac.il" .
 
+<https://bio.tools/prost> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0130,
+        edam:topic_0199 ;
+    sc:citation <https://doi.org/10.1021/ACS.JCIM.2C00799>,
+        "pubmed:35973091" ;
+    sc:description "AlphaFold2-aware Sequence-Based Predictor to Estimate Protein Stability Changes upon Missense Mutations." ;
+    sc:featureList edam:operation_0331 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "PROST" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://prost.erc.monash.edu/seq" .
+
 <https://bio.tools/prostar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0121 ;
@@ -383001,7 +403128,7 @@ Well, I've seen too many dumb errors with processing PROSS results and gene orde
     biotools:primaryContact "Samuel Wieczorek" .
 
 <https://bio.tools/prostrip> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_2275,
@@ -383016,8 +403143,28 @@ Well, I've seen too many dumb errors with processing PROSS results and gene orde
     sc:softwareHelp <http://cluster.physics.iisc.ernet.in/prostrip/> ;
     sc:url "http://cluster.physics.iisc.ernet.in/prostrip/" .
 
+<https://bio.tools/prosynar> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0091,
+        edam:topic_0749 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC022>,
+        "pubmed:35020788" ;
+    sc:description "PROmoting SYNthetic hARmony is a read merger that will take information from the reference into account when deciding whether to merge a read pair." ;
+    sc:featureList edam:operation_0232,
+        edam:operation_2422,
+        edam:operation_3198 ;
+    sc:isAccessibleForFree true ;
+    sc:license "LGPL-2.1" ;
+    sc:name "ProSynAR" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://github.com/Benjamin-Crysup/prosynar/blob/main/Manual.pdf> ;
+    sc:url "https://github.com/Benjamin-Crysup/prosynar" .
+
 <https://bio.tools/prot2d> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0108 ;
@@ -383036,7 +403183,7 @@ Well, I've seen too many dumb errors with processing PROSS results and gene orde
     biotools:primaryContact "Sebastien Artigaud" .
 
 <https://bio.tools/prot2hg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0108,
         edam:topic_0622,
@@ -383056,7 +403203,7 @@ Genetic variation occurring within conserved functional protein domains warrants
     sc:url "http://www.prot2hg.com" .
 
 <https://bio.tools/protTrace> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3293,
@@ -383081,38 +403228,38 @@ Genetic variation occurring within conserved functional protein domains warrants
 
 <https://bio.tools/prot_pi> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0846" ;
-            sc:name "Chemical formula" ;
-            sc:sameAs "http://edamontology.org/data_0846" ],
+            sc:additionalType "http://edamontology.org/data_2974" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Protein sequence (raw)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2974" ;
-            sc:name "Protein sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_2974" ] ;
+            sc:additionalType "http://edamontology.org/data_0846" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Chemical formula" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2970" ;
-            sc:name "Protein hydropathy data" ;
-            sc:sameAs "http://edamontology.org/data_2970" ],
+            sc:additionalType "http://edamontology.org/data_1528" ;
+            sc:encodingFormat "http://edamontology.org/format_3620" ;
+            sc:name "Protein isoelectric point" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2979" ;
-            sc:name "Peptide property" ;
-            sc:sameAs "http://edamontology.org/data_2979" ],
+            sc:additionalType "http://edamontology.org/data_1520" ;
+            sc:encodingFormat "http://edamontology.org/format_3620" ;
+            sc:name "Peptide hydrophobic moment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1520" ;
-            sc:name "Peptide hydrophobic moment" ;
-            sc:sameAs "http://edamontology.org/data_1520" ],
+            sc:additionalType "http://edamontology.org/data_2970" ;
+            sc:encodingFormat "http://edamontology.org/format_3620" ;
+            sc:name "Protein hydropathy data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1522" ;
-            sc:name "Protein sequence hydropathy plot" ;
-            sc:sameAs "http://edamontology.org/data_1522" ],
+            sc:additionalType "http://edamontology.org/data_2979" ;
+            sc:encodingFormat "http://edamontology.org/format_3620" ;
+            sc:name "Peptide property" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0897" ;
-            sc:name "Protein property" ;
-            sc:sameAs "http://edamontology.org/data_0897" ],
+            sc:additionalType "http://edamontology.org/data_0897" ;
+            sc:encodingFormat "http://edamontology.org/format_3620" ;
+            sc:name "Protein property" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1528" ;
-            sc:name "Protein isoelectric point" ;
-            sc:sameAs "http://edamontology.org/data_1528" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1522" ;
+            sc:encodingFormat "http://edamontology.org/format_3591" ;
+            sc:name "Protein sequence hydropathy plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0601,
@@ -383132,7 +403279,7 @@ Genetic variation occurring within conserved functional protein domains warrants
     sc:url "https://www.protpi.ch" .
 
 <https://bio.tools/protac-db> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0749,
         edam:topic_3047,
@@ -383154,7 +403301,7 @@ PROTACs Warheads E3 ligands Linkers.""" ;
     sc:url "http://cadd.zju.edu.cn/protacdb/" .
 
 <https://bio.tools/protael> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080 ;
@@ -383170,7 +403317,7 @@ PROTACs Warheads E3 ligands Linkers.""" ;
     sc:url "http://proteins.burnham.org:8080/Protael/" .
 
 <https://bio.tools/protag> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:description "Smart Tag and Add-In solution for Microsoft Office applications and allows querying the ProThesaurus Web Service from within an Office application while typing your documents." ;
@@ -383181,7 +403328,7 @@ PROTACs Warheads E3 ligands Linkers.""" ;
     sc:url "http://services.bio.ifi.lmu.de:1046/prothesaurus/#Documentation" .
 
 <https://bio.tools/protbud> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0078 ;
     sc:description "Protein Biological Unit Database is a new database of asymmetric units and biological units (BU) from PDB and PQS, and uses SCOP and PSIBLAST to provide ASU and BU for all entries with proteins in particular superfamilies or families." ;
@@ -383191,7 +403338,7 @@ PROTACs Warheads E3 ligands Linkers.""" ;
     sc:url "http://dunbrack.fccc.edu/ProtBuD/ProtBuD.php" .
 
 <https://bio.tools/protchemsi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -383214,7 +403361,7 @@ PROTACs Warheads E3 ligands Linkers.""" ;
     biotools:primaryContact "Olga Kalinina" .
 
 <https://bio.tools/protcid> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0166,
@@ -383233,7 +403380,7 @@ PROTACs Warheads E3 ligands Linkers.""" ;
     biotools:primaryContact "ProtCID Support" .
 
 <https://bio.tools/protdcal> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_2814,
@@ -383253,7 +403400,7 @@ PROTACs Warheads E3 ligands Linkers.""" ;
     biotools:primaryContact "Yasser B. Ruiz Blanco" .
 
 <https://bio.tools/protdes> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0130,
@@ -383268,7 +403415,7 @@ PROTACs Warheads E3 ligands Linkers.""" ;
     sc:url "http://jaramillolab.issb.genopole.fr/display/sbsite/Download" .
 
 <https://bio.tools/protea> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -383285,7 +403432,7 @@ PROTACs Warheads E3 ligands Linkers.""" ;
     sc:url "http://bioinfo.lifl.fr/protea/index.php" .
 
 <https://bio.tools/proteand> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_2275,
         edam:topic_2814 ;
@@ -383299,7 +403446,7 @@ PROTACs Warheads E3 ligands Linkers.""" ;
     sc:url "https://simtk.org/home/proteand" .
 
 <https://bio.tools/proteaseguru> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -383318,7 +403465,7 @@ PROTACs Warheads E3 ligands Linkers.""" ;
     sc:url "https://github.com/smith-chem-wisc/ProteaseGuru" .
 
 <https://bio.tools/protedna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0130,
@@ -383343,7 +403490,7 @@ PROTACs Warheads E3 ligands Linkers.""" ;
     sc:url "http://serv.csbb.ntu.edu.tw/ProteDNA/index.php" .
 
 <https://bio.tools/protege> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0089,
@@ -383359,7 +403506,7 @@ PROTACs Warheads E3 ligands Linkers.""" ;
     sc:url "http://protege.stanford.edu/" .
 
 <https://bio.tools/protegen> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0623,
@@ -383378,7 +403525,7 @@ PROTACs Warheads E3 ligands Linkers.""" ;
     biotools:primaryContact "Contact Form" .
 
 <https://bio.tools/protein-analyzing-tools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_3318 ;
@@ -383393,7 +403540,7 @@ PROTACs Warheads E3 ligands Linkers.""" ;
     biotools:primaryContact "Asadur Rahman" .
 
 <https://bio.tools/protein-array-tool> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -383412,7 +403559,7 @@ PROTACs Warheads E3 ligands Linkers.""" ;
     biotools:primaryContact "Danny Allen" .
 
 <https://bio.tools/protein-domain-segmentor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Plug-in" ;
     sc:applicationSubCategory edam:topic_0082,
@@ -383428,7 +403575,7 @@ PROTACs Warheads E3 ligands Linkers.""" ;
     sc:url "https://github.com/egurapha/prot_domain_segmentor" .
 
 <https://bio.tools/protein_cavity_search> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_2814 ;
@@ -383445,14 +403592,14 @@ PROTACs Warheads E3 ligands Linkers.""" ;
 
 <https://bio.tools/protein_contacts_atlas> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1048" ;
-            sc:name "Database ID" ;
-            sc:sameAs "http://edamontology.org/data_1048" ] ;
+            sc:additionalType "http://edamontology.org/data_1048" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Database ID" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0896" ;
-            sc:name "Protein report" ;
-            sc:sameAs "http://edamontology.org/data_0896" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0896" ;
+            sc:encodingFormat "http://edamontology.org/format_3464" ;
+            sc:name "Protein report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0602 ;
@@ -383470,7 +403617,7 @@ PROTACs Warheads E3 ligands Linkers.""" ;
     sc:url "http://www.mrc-lmb.cam.ac.uk/pca/" .
 
 <https://bio.tools/protein_coverage_summarizer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:description "Protein Coverage Summarizer can be used to determine the percent of the residues in each protein sequence that have been identified. The program requires two input files: the first should contain the protein names and protein sequences while the second should contain the peptide sequences and optionally also contain the protein name associated with each peptide sequence." ;
@@ -383481,7 +403628,7 @@ PROTACs Warheads E3 ligands Linkers.""" ;
     sc:url "http://omics.pnl.gov/software/protein-coverage-summarizer" .
 
 <https://bio.tools/protein_digestion_simulator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0154,
@@ -383498,14 +403645,14 @@ PROTACs Warheads E3 ligands Linkers.""" ;
 
 <https://bio.tools/protein_digestion_simulator_basic> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2974" ;
-            sc:name "Protein sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_2974" ] ;
+            sc:additionalType "http://edamontology.org/data_2974" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Protein sequence (raw)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1238" ;
-            sc:name "Proteolytic digest" ;
-            sc:sameAs "http://edamontology.org/data_1238" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1238" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Proteolytic digest" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0123,
@@ -383520,14 +403667,14 @@ PROTACs Warheads E3 ligands Linkers.""" ;
     sc:url "http://omics.pnl.gov/software/protein-digestion-simulator" .
 
 <https://bio.tools/protein_dipole_moments_server> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "An Internet server calculates the net charge, dipole moment and mean radius of any 3D protein structure or its constituent peptide chains, and displays the dipole vector superimposed on a ribbon backbone of the protein." ;
     sc:name "Protein Dipole Moments Server" ;
     sc:softwareVersion "1.0" ;
     sc:url "https://dipole.weizmann.ac.il" .
 
 <https://bio.tools/protein_disorder_predictors> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121 ;
     sc:description "List is a list or Protein Disorder Predictors" ;
@@ -383541,7 +403688,7 @@ PROTACs Warheads E3 ligands Linkers.""" ;
     biotools:primaryContact "Contact Form" .
 
 <https://bio.tools/protein_frustratometer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0102,
@@ -383562,7 +403709,7 @@ PROTACs Warheads E3 ligands Linkers.""" ;
         "Msc. Leandro G. Radusky" .
 
 <https://bio.tools/protein_homeostatis_database> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_1317,
         edam:topic_3510 ;
@@ -383583,7 +403730,7 @@ once the user specifies a set of E. coli proteins, the site returns all the feat
     biotools:primaryContact "Joost Schymkowitz" .
 
 <https://bio.tools/protein_imager> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_1317,
         edam:topic_3382 ;
@@ -383598,14 +403745,13 @@ This website requires javascript and CORS enabled to work properly. Some browser
 
 <https://bio.tools/protein_model_portal> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3021" ;
-            sc:name "UniProt accession" ;
-            sc:sameAs "http://edamontology.org/data_3021" ] ;
+            sc:additionalType "http://edamontology.org/data_3021" ;
+            sc:name "UniProt accession" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0896" ;
-            sc:name "Protein report" ;
-            sc:sameAs "http://edamontology.org/data_0896" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0896" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Protein report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0121,
@@ -383629,7 +403775,7 @@ PMP has reached its end of life and no longer provides data.""" ;
     biotools:primaryContact <https://orcid.org/0000-0003-2715-335X> .
 
 <https://bio.tools/protein_naming_utility> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0089,
@@ -383648,7 +403794,7 @@ PMP has reached its end of life and no longer provides data.""" ;
     biotools:primaryContact "J. Goll" .
 
 <https://bio.tools/protein_peeling_3_d> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -383673,12 +403819,16 @@ PMP has reached its end of life and no longer provides data.""" ;
     biotools:primaryContact "Jean-Christophe Gelly" .
 
 <https://bio.tools/protein_sequence_logos> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
         edam:topic_0160 ;
-    sc:citation "pubmed:475985" ;
+    sc:citation <https://doi.org/10.1093/bioinformatics/13.6.583>,
+        <https://doi.org/10.1093/nar/18.20.6097>,
+        "pmcid:PMC332411",
+        "pubmed:2172928",
+        "pubmed:9475985" ;
     sc:description "Protein sequence alignment viewed as sequence logos. The total height of the sequence information part is computed as the relative entropy between the observed fractions of a given symbol and the respective a priori probabilities." ;
     sc:featureList edam:operation_0564 ;
     sc:license "Other" ;
@@ -383691,7 +403841,7 @@ PMP has reached its end of life and no longer provides data.""" ;
     biotools:primaryContact "RTH Team" .
 
 <https://bio.tools/protein_sequence_motif_extractor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:description "The Protein Sequence Motif Extractor reads a fasta file or tab delimited file containing protein sequences, then looks for the specified motif in each protein sequence. Results are stored in a new file containing the regions of the protein that contain the specified motif. The default output format is a new fasta file named _Motifs.fasta, but you can alternatively use /T to specify that a tab-delimited text file be created." ;
@@ -383702,7 +403852,7 @@ PMP has reached its end of life and no longer provides data.""" ;
     sc:url "http://omics.pnl.gov/software/protein-sequence-motif-extractor" .
 
 <https://bio.tools/protein_solubility> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3474 ;
@@ -383724,7 +403874,7 @@ PMP has reached its end of life and no longer provides data.""" ;
         "Xiaonan Wang" .
 
 <https://bio.tools/protein_spotlight> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0121 ;
     sc:description "Protein Spotlight is a monthly review written by the Swiss-Prot team of the Swiss Institute of Bioinformatics. Spotlight articles describe a specific protein or family of proteins on an informal tone." ;
@@ -383738,18 +403888,18 @@ PMP has reached its end of life and no longer provides data.""" ;
 
 <https://bio.tools/proteinart> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1233" ;
-            sc:name "Sequence set (protein)" ;
-            sc:sameAs "http://edamontology.org/data_1233" ],
+            sc:additionalType "http://edamontology.org/data_1233" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence set (protein)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ] ;
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Peptide identification" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Peptide identification" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0121,
@@ -383767,38 +403917,33 @@ PMP has reached its end of life and no longer provides data.""" ;
 
 <https://bio.tools/proteinatlas> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1026" ;
-            sc:name "Gene symbol" ;
-            sc:sameAs "http://edamontology.org/data_1026" ],
+            sc:additionalType "http://edamontology.org/data_0968" ;
+            sc:name "Keyword" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0968" ;
-            sc:name "Keyword" ;
-            sc:sameAs "http://edamontology.org/data_0968" ],
+            sc:additionalType "http://edamontology.org/data_1026" ;
+            sc:name "Gene symbol" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2772" ;
-            sc:name "HPA antibody id" ;
-            sc:sameAs "http://edamontology.org/data_2772" ],
+            sc:additionalType "http://edamontology.org/data_1033" ;
+            sc:name "Ensembl gene ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1033" ;
-            sc:name "Ensembl gene ID" ;
-            sc:sameAs "http://edamontology.org/data_1033" ] ;
+            sc:additionalType "http://edamontology.org/data_2772" ;
+            sc:name "HPA antibody id" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Gene expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ],
+            sc:additionalType "http://edamontology.org/data_0916" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Gene report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0916" ;
-            sc:name "Gene report" ;
-            sc:sameAs "http://edamontology.org/data_0916" ],
+            sc:additionalType "http://edamontology.org/data_0916" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Gene report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0916" ;
-            sc:name "Gene report" ;
-            sc:sameAs "http://edamontology.org/data_0916" ],
+            sc:additionalType "http://edamontology.org/data_0916" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Gene report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0916" ;
-            sc:name "Gene report" ;
-            sc:sameAs "http://edamontology.org/data_0916" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:name "Gene expression data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0140,
         edam:topic_0203,
@@ -383821,7 +403966,7 @@ PMP has reached its end of life and no longer provides data.""" ;
     biotools:primaryContact "Support" .
 
 <https://bio.tools/proteinbert> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0130,
         edam:topic_0154,
@@ -383838,7 +403983,7 @@ PMP has reached its end of life and no longer provides data.""" ;
     biotools:primaryContact <https://orcid.org/0000-0002-0510-2546> .
 
 <https://bio.tools/proteinccd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -383860,7 +404005,7 @@ PMP has reached its end of life and no longer provides data.""" ;
     biotools:primaryContact "A. Murachelli" .
 
 <https://bio.tools/proteincontactmap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3070,
@@ -383881,14 +404026,14 @@ PMP has reached its end of life and no longer provides data.""" ;
 
 <https://bio.tools/proteincutter> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_2200" ;
+            sc:name "Protein sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Protein features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3520 ;
     sc:author "Martin Raus" ;
@@ -383910,7 +404055,7 @@ PMP has reached its end of life and no longer provides data.""" ;
     biotools:primaryContact "Martin Raus" .
 
 <https://bio.tools/proteindbs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -383932,7 +404077,7 @@ PMP has reached its end of life and no longer provides data.""" ;
     biotools:primaryContact "shyuc@missouri.edu" .
 
 <https://bio.tools/proteindecision> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0121 ;
@@ -383947,7 +404092,7 @@ PMP has reached its end of life and no longer provides data.""" ;
     sc:url "http://digbio.missouri.edu/ProteinDecision/" .
 
 <https://bio.tools/proteindiffraction> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0821,
         edam:topic_2828,
@@ -383965,22 +404110,21 @@ PMP has reached its end of life and no longer provides data.""" ;
 
 <https://bio.tools/proteinensemble> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3021" ;
-            sc:name "UniProt accession" ;
-            sc:sameAs "http://edamontology.org/data_3021" ],
+            sc:additionalType "http://edamontology.org/data_3021" ;
+            sc:name "UniProt accession" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2007" ;
-            sc:name "UniProt keyword" ;
-            sc:sameAs "http://edamontology.org/data_2007" ] ;
+            sc:additionalType "http://edamontology.org/data_2007" ;
+            sc:encodingFormat "http://edamontology.org/format_1964" ;
+            sc:name "UniProt keyword" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ],
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:encodingFormat "http://edamontology.org/format_3508" ;
+            sc:name "Sequence features" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_3508" ;
+            sc:name "Protein structure" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web API",
         "Web application" ;
@@ -384004,7 +404148,7 @@ PMP has reached its end of life and no longer provides data.""" ;
     sc:url "https://proteinensemble.org/" .
 
 <https://bio.tools/proteinevolverabc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0199,
@@ -384024,7 +404168,7 @@ PMP has reached its end of life and no longer provides data.""" ;
     sc:url "https://github.com/miguelarenas/proteinevolverabc" .
 
 <https://bio.tools/proteinfer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0623,
@@ -384044,7 +404188,7 @@ PMP has reached its end of life and no longer provides data.""" ;
     sc:url "https://github.com/google-research/proteinfer" .
 
 <https://bio.tools/proteinfuncpred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_1775 ;
@@ -384058,7 +404202,7 @@ PMP has reached its end of life and no longer provides data.""" ;
     sc:url "http://sfb.kaust.edu.sa/Pages/Software.aspx" .
 
 <https://bio.tools/proteinguru> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0123,
@@ -384076,7 +404220,7 @@ PMP has reached its end of life and no longer provides data.""" ;
     sc:url "http://www.proteinguru.com" .
 
 <https://bio.tools/proteinhistorian> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0736,
@@ -384094,7 +404238,7 @@ PMP has reached its end of life and no longer provides data.""" ;
     sc:url "http://lighthouse.ucsf.edu/ProteinHistorian/" .
 
 <https://bio.tools/proteininfer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121 ;
     sc:citation <https://doi.org/10.1109/TCBB.2013.110> ;
@@ -384107,7 +404251,7 @@ PMP has reached its end of life and no longer provides data.""" ;
     sc:url "http://bioinformatics.ust.hk/proteininfer/" .
 
 <https://bio.tools/proteinlasso> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -384123,7 +404267,7 @@ PMP has reached its end of life and no longer provides data.""" ;
     sc:url "http://sourceforge.net/projects/proteinlasso/" .
 
 <https://bio.tools/proteinlens> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0602,
@@ -384146,7 +404290,7 @@ PMP has reached its end of life and no longer provides data.""" ;
     biotools:primaryContact <https://orcid.org/0000-0002-8968-0713> .
 
 <https://bio.tools/proteinorm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
         edam:topic_3518,
@@ -384166,8 +404310,38 @@ As input, proteiNorm expects tab-separated peptide (optional) and protein data (
     sc:name "proteiNorm" ;
     sc:url "https://sbyrum.shinyapps.io/proteiNorm/" .
 
+<https://bio.tools/proteinortho> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Nucleic acid sequence" ] ;
+    bsc:output [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Desktop application" ;
+    sc:applicationSubCategory edam:topic_0084 ;
+    sc:citation <https://doi.org/10.1186/1471-2105-12-124>,
+        "pmcid:PMC3114741",
+        "pubmed:21526987" ;
+    sc:description "Proteinortho is a tool to detect orthologous genes within different species" ;
+    sc:featureList edam:operation_3663 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-2.0" ;
+    sc:name "Proteinortho" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareVersion "6.0.14" ;
+    sc:url "https://www.bioinf.uni-leipzig.de/Software/proteinortho/" .
+
 <https://bio.tools/proteinprofiles> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0078 ;
     sc:description "Significance assessment for distance measures of time-course protein profiles" ;
@@ -384185,10 +404359,9 @@ As input, proteiNorm expects tab-separated peptide (optional) and protein data (
 
 <https://bio.tools/proteinprompt> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:name "Protein sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0128,
@@ -384209,14 +404382,14 @@ As input, proteiNorm expects tab-separated peptide (optional) and protein data (
 
 <https://bio.tools/proteinprophet> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ] ;
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_3655" ;
+            sc:name "Peptide identification" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_3468" ;
+            sc:name "Peptide identification" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_2269,
@@ -384235,7 +404408,7 @@ As input, proteiNorm expects tab-separated peptide (optional) and protein data (
     sc:url "http://tools.proteomecenter.org/ProteinProphet.php" .
 
 <https://bio.tools/proteinprospector> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3489,
@@ -384253,22 +404426,20 @@ As input, proteiNorm expects tab-separated peptide (optional) and protein data (
 
 <https://bio.tools/proteins_api> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0842" ;
-            sc:name "Identifier" ;
-            sc:sameAs "http://edamontology.org/data_0842" ],
+            sc:additionalType "http://edamontology.org/data_0842" ;
+            sc:name "Identifier" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API" ;
     sc:applicationSubCategory edam:topic_0121 ;
     sc:citation <https://doi.org/10.1093/nar/gkx237> ;
@@ -384284,7 +404455,7 @@ As input, proteiNorm expects tab-separated peptide (optional) and protein data (
         "Maria Martin" .
 
 <https://bio.tools/proteinshader> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0102,
@@ -384302,7 +404473,7 @@ As input, proteiNorm expects tab-separated peptide (optional) and protein data (
     sc:url "http://proteinshader.sourceforge.net/" .
 
 <https://bio.tools/proteinsolver> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0130,
         edam:topic_0154,
@@ -384322,14 +404493,14 @@ Generate protein sequences matching a predetermined geometry¶.""" ;
 
 <https://bio.tools/proteinspector> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ] ;
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Mass spectrometry data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3683" ;
+            sc:name "Image" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121 ;
     sc:citation <https://doi.org/10.1021/acs.jproteome.6b00028> ;
@@ -384347,30 +404518,29 @@ Generate protein sequences matching a predetermined geometry¶.""" ;
 
 <https://bio.tools/proteinsplus> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ] ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein structure" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ],
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein structure" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1772" ;
-            sc:name "Score" ;
-            sc:sameAs "http://edamontology.org/data_1772" ],
+            sc:additionalType "http://edamontology.org/data_0897" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Protein property" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0897" ;
-            sc:name "Protein property" ;
-            sc:sameAs "http://edamontology.org/data_0897" ],
+            sc:additionalType "http://edamontology.org/data_2992" ;
+            sc:encodingFormat "http://edamontology.org/format_3604" ;
+            sc:name "Protein structure image" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2992" ;
-            sc:name "Protein structure image" ;
-            sc:sameAs "http://edamontology.org/data_2992" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1208" ;
+            sc:name "Sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1772" ;
+            sc:name "Score" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_3534 ;
@@ -384392,7 +404562,7 @@ Generate protein sequences matching a predetermined geometry¶.""" ;
     sc:url "http://proteinsplus.zbh.uni-hamburg.de" .
 
 <https://bio.tools/proteintools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
@@ -384414,7 +404584,7 @@ Generate protein sequences matching a predetermined geometry¶.""" ;
         <https://orcid.org/0000-0003-4172-8201> .
 
 <https://bio.tools/proteinvolume> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078 ;
     sc:citation <https://doi.org/10.1186/s12859-015-0531-2> ;
@@ -384427,7 +404597,7 @@ Generate protein sequences matching a predetermined geometry¶.""" ;
     sc:url "http://gmlab.bio.rpi.edu/" .
 
 <https://bio.tools/proteinvr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0154,
         edam:topic_2814 ;
@@ -384446,14 +404616,12 @@ ProteinVR is a web-based application that allows users to view protein/ligand st
 
 <https://bio.tools/proteios> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3108" ;
-            sc:name "Experimental measurement" ;
-            sc:sameAs "http://edamontology.org/data_3108" ] ;
+            sc:additionalType "http://edamontology.org/data_3108" ;
+            sc:name "Experimental measurement" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:name "Protein features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3071,
@@ -384468,7 +404636,7 @@ ProteinVR is a web-based application that allows users to view protein/ligand st
     sc:url "http://www.proteios.org" .
 
 <https://bio.tools/protemot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -384491,7 +404659,7 @@ ProteinVR is a web-based application that allows users to view protein/ligand st
     biotools:primaryContact "Protemot Support" .
 
 <https://bio.tools/proteny> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0121,
@@ -384507,7 +404675,7 @@ ProteinVR is a web-based application that allows users to view protein/ligand st
     sc:url "https://github.com/thiesgehrmann/proteny" .
 
 <https://bio.tools/proteo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0121 ;
@@ -384528,7 +404696,7 @@ We interrogate peptides from eight large-scale human proteomics experiments and
     sc:url "http://proteo.bioinfo.cnio.es" .
 
 <https://bio.tools/proteoannotator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0219,
@@ -384544,7 +404712,7 @@ We interrogate peptides from eight large-scale human proteomics experiments and
     biotools:primaryContact "Andrew Jones" .
 
 <https://bio.tools/proteocombiner> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
         edam:topic_0601,
@@ -384563,7 +404731,7 @@ ProteoCombiner capitalizes on the data arising from different experiments and pr
     sc:url "https://proteocombiner.pasteur.fr" .
 
 <https://bio.tools/proteodisco> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Bioinformatics portal" ;
     sc:applicationSubCategory edam:topic_3391 ;
     sc:citation <https://doi.org/10.1101/2021.09.17.460755> ;
@@ -384571,8 +404739,31 @@ ProteoCombiner capitalizes on the data arising from different experiments and pr
     sc:name "ProteoDisco" ;
     sc:url "https://github.com/ErasmusMC-CCBC/ProteoDisco/" .
 
+<https://bio.tools/proteoform_suite> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Desktop application" ;
+    sc:applicationSubCategory edam:topic_0080,
+        edam:topic_0121,
+        edam:topic_0154,
+        edam:topic_0601,
+        edam:topic_3520 ;
+    sc:citation <https://doi.org/10.1007/978-1-0716-2325-1_7>,
+        "pubmed:35657588" ;
+    sc:description "Proteoform Analysis and Construction of Proteoform Families in Proteoform Suite." ;
+    sc:featureList edam:operation_0417,
+        edam:operation_3645,
+        edam:operation_3799 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "Proteoform Suite" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://www.youtube.com/watch?v=P17Y_aNYbAM&ab_channel=LMSResearchGroup> ;
+    sc:url "http://smith-chem-wisc.github.io/ProteoformSuite/" .
+
 <https://bio.tools/proteoformclassifier> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -384591,18 +404782,18 @@ ProteoCombiner capitalizes on the data arising from different experiments and pr
 
 <https://bio.tools/proteoformer> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3496" ;
-            sc:name "RNA sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_3496" ] ;
+            sc:additionalType "http://edamontology.org/data_3496" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "RNA sequence (raw)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2080" ;
-            sc:name "Database search results" ;
-            sc:sameAs "http://edamontology.org/data_2080" ],
+            sc:additionalType "http://edamontology.org/data_2080" ;
+            sc:encodingFormat "http://edamontology.org/format_3621" ;
+            sc:name "Database search results" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2886" ;
-            sc:name "Protein sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2886" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2886" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence record" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3120,
@@ -384641,8 +404832,31 @@ ProteoCombiner capitalizes on the data arising from different experiments and pr
     biotools:primaryContact <https://orcid.org/0000-0001-9441-9539>,
         <https://orcid.org/0000-0002-7575-2085> .
 
+<https://bio.tools/proteogan> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0602,
+        edam:topic_3068,
+        edam:topic_3474,
+        edam:topic_3576 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC353>,
+        "pmcid:PMC9237736",
+        "pubmed:35639661" ;
+    sc:description "Conditional generative modeling for de novo protein design with hierarchical functions." ;
+    sc:featureList edam:operation_0477,
+        edam:operation_3359,
+        edam:operation_3557,
+        edam:operation_4008 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "ProteoGAN" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/timkucera/proteogan" .
+
 <https://bio.tools/proteomatic> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -384657,14 +404871,12 @@ ProteoCombiner capitalizes on the data arising from different experiments and pr
 
 <https://bio.tools/proteome-pi> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1233" ;
-            sc:name "Sequence set (protein)" ;
-            sc:sameAs "http://edamontology.org/data_1233" ] ;
+            sc:additionalType "http://edamontology.org/data_1233" ;
+            sc:name "Sequence set (protein)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1528" ;
-            sc:name "Protein isoelectric point" ;
-            sc:sameAs "http://edamontology.org/data_1528" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1528" ;
+            sc:name "Protein isoelectric point" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0123,
@@ -384686,7 +404898,7 @@ ProteoCombiner capitalizes on the data arising from different experiments and pr
     biotools:primaryContact <http://orcid.org/0000-0001-8187-1980> .
 
 <https://bio.tools/proteome_analyst> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0121,
@@ -384707,14 +404919,14 @@ ProteoCombiner capitalizes on the data arising from different experiments and pr
 
 <https://bio.tools/proteomedigestsim> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2974" ;
-            sc:name "Protein sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_2974" ] ;
+            sc:additionalType "http://edamontology.org/data_2974" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Protein sequence (raw)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1238" ;
-            sc:name "Proteolytic digest" ;
-            sc:sameAs "http://edamontology.org/data_1238" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1238" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Proteolytic digest" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0123,
@@ -384731,7 +404943,7 @@ ProteoCombiner capitalizes on the data arising from different experiments and pr
     sc:url "https://github.com/jgmeyerucsd/ProteomeDigestSim" .
 
 <https://bio.tools/proteomeexpert> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -384751,7 +404963,7 @@ The application is based on the Shiny package and can be run locally or on a ser
     sc:url "https://proteomic.shinyapps.io/peserver/" .
 
 <https://bio.tools/proteometools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Desktop application",
         "Library" ;
@@ -384770,7 +404982,7 @@ The application is based on the Shiny package and can be run locally or on a ser
     sc:url "http://www.proteometools.org/" .
 
 <https://bio.tools/proteomexchange> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -384791,7 +405003,7 @@ The application is based on the Shiny package and can be run locally or on a ser
     sc:url "http://www.proteomexchange.org/" .
 
 <https://bio.tools/proteomics_toolbox> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121 ;
     sc:description """We provide a proteomics software toolbox (i.e., offering pre-installed, pre-configured and tested own tools and free third-party software) on our hardware infrastructure.
@@ -384805,7 +405017,7 @@ The toolbox can be used on our high-performance hardware  infrastructure via hig
     sc:url "http://www.ruhr-uni-bochum.de/mpc/medical_bioinformatics/bioinfraprot/index.html.en" .
 
 <https://bio.tools/proteomicsannotationhubdata> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -384825,18 +405037,18 @@ The toolbox can be used on our high-performance hardware  infrastructure via hig
 
 <https://bio.tools/proteomicsdb> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1009" ;
-            sc:name "Protein name" ;
-            sc:sameAs "http://edamontology.org/data_1009" ] ;
+            sc:additionalType "http://edamontology.org/data_1009" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Protein name" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ],
+            sc:additionalType "http://edamontology.org/data_0896" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Protein report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0896" ;
-            sc:name "Protein report" ;
-            sc:sameAs "http://edamontology.org/data_0896" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3604" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -384859,7 +405071,7 @@ The toolbox can be used on our high-performance hardware  infrastructure via hig
     sc:url "https://www.proteomicsdb.org/" .
 
 <https://bio.tools/proteomicsqc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API",
         "Web application",
         "Workflow" ;
@@ -384873,7 +405085,7 @@ The toolbox can be used on our high-performance hardware  infrastructure via hig
     sc:url "https://github.com/sorenwacker/ProteomicsQC" .
 
 <https://bio.tools/proteomill> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
         edam:topic_0602,
@@ -384894,7 +405106,7 @@ Set maximum number allowed missing values for each condition.""" ;
     sc:url "https://proteomill.com" .
 
 <https://bio.tools/proteomirexpress> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0659,
@@ -384911,7 +405123,7 @@ Set maximum number allowed missing values for each condition.""" ;
     sc:url "http://jjwanglab.org/proteomirexpress/" .
 
 <https://bio.tools/proteopedia> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_1317,
         edam:topic_3068,
@@ -384933,7 +405145,7 @@ Set maximum number allowed missing values for each condition.""" ;
     sc:url "http://www.proteopedia.org" .
 
 <https://bio.tools/proteoqc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0121 ;
@@ -384951,7 +405163,7 @@ Set maximum number allowed missing values for each condition.""" ;
     biotools:primaryContact "Bo Wen" .
 
 <https://bio.tools/proteosafe> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -384966,7 +405178,7 @@ Set maximum number allowed missing values for each condition.""" ;
     sc:url "http://proteomics.ucsd.edu/ProteoSAFe/" .
 
 <https://bio.tools/proteosign> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121 ;
     sc:citation <https://doi.org/10.1093/nar/gkx444>,
@@ -384983,7 +405195,7 @@ It aims to fully automate the process of statistically evaluating differential e
     biotools:primaryContact "IOANNIS ILIOPOULOS" .
 
 <https://bio.tools/proteosushi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
         edam:topic_0154,
@@ -385003,7 +405215,7 @@ ProteoSushi transforms peptide-centric, PTM-enriched peptide data into condensed
     sc:url "http://github.com/HeldLab/ProteoSushi" .
 
 <https://bio.tools/proteoviz> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
         edam:topic_0154,
@@ -385023,7 +405235,7 @@ Interactive tool for Phosphoproteomics.""" ;
     sc:url "https://github.com/ByrumLab/ProteoViz" .
 
 <https://bio.tools/proteowizard> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -385040,7 +405252,7 @@ Interactive tool for Phosphoproteomics.""" ;
     sc:url "http://proteowizard.sourceforge.net/" .
 
 <https://bio.tools/proteus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0140,
@@ -385062,7 +405274,7 @@ Interactive tool for Phosphoproteomics.""" ;
     biotools:primaryContact "Michal Linial" .
 
 <https://bio.tools/proteus-engineering> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0130,
         edam:topic_0154,
         edam:topic_0199 ;
@@ -385082,7 +405294,7 @@ Proteus is a Webtool, database, and method to propose mutations for proteins use
     sc:url "http://proteus.dcc.ufmg.br" .
 
 <https://bio.tools/proteus2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0736,
@@ -385104,7 +405316,7 @@ Proteus is a Webtool, database, and method to propose mutations for proteins use
     biotools:primaryContact "Contact Form" .
 
 <https://bio.tools/protevol> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0130,
@@ -385118,7 +405330,7 @@ Proteus is a Webtool, database, and method to propose mutations for proteins use
     sc:url "http://ub.cbm.uam.es/software/Prot_Evol.php" .
 
 <https://bio.tools/protexa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
         edam:topic_0203,
@@ -385138,8 +405350,19 @@ ProTExA is a web-tool that provides a post-processing workflow for the analysis
     sc:name "ProTExA" ;
     sc:url "http://bioinformatics.cing.ac.cy/protexa/#step-1" .
 
+<https://bio.tools/protexcluder> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0157 ;
+    sc:description "A modified version of ProtExcluder for building conda package" ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "protexcluder" ;
+    sc:operatingSystem "Linux" ;
+    sc:url "https://github.com/NBISweden/ProtExcluder" .
+
 <https://bio.tools/protfold-dfg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0130,
         edam:topic_0736,
@@ -385158,14 +405381,14 @@ a: ProtFold-DFG is based on the DeepSVM-fold(CCM), DeepSVM-fold(PSFM), MotifCNN-
 
 <https://bio.tools/protfun> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Protein features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Web service" ;
     sc:applicationSubCategory edam:topic_3510 ;
@@ -385185,7 +405408,7 @@ a: ProtFold-DFG is based on the DeepSVM-fold(CCM), DeepSVM-fold(PSFM), MotifCNN-
     sc:url "http://cbs.dtu.dk/services/ProtFun/" .
 
 <https://bio.tools/protgear> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0203,
@@ -385205,7 +405428,7 @@ a: ProtFold-DFG is based on the DeepSVM-fold(CCM), DeepSVM-fold(PSFM), MotifCNN-
     biotools:primaryContact "Kennedy Mwai" .
 
 <https://bio.tools/protgenerics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0121 ;
@@ -385223,7 +405446,7 @@ a: ProtFold-DFG is based on the DeepSVM-fold(CCM), DeepSVM-fold(PSFM), MotifCNN-
     biotools:primaryContact "Laurent Gatto" .
 
 <https://bio.tools/prothermdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
         edam:topic_0130,
@@ -385239,7 +405462,7 @@ a: ProtFold-DFG is based on the DeepSVM-fold(CCM), DeepSVM-fold(PSFM), MotifCNN-
     sc:url "https://web.iitm.ac.in/bioinfo2/prothermdb/index.html" .
 
 <https://bio.tools/proticdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -385253,7 +405476,7 @@ a: ProtFold-DFG is based on the DeepSVM-fold(CCM), DeepSVM-fold(PSFM), MotifCNN-
     sc:url "http://pappso.inra.fr/bioinfo/proticdb/" .
 
 <https://bio.tools/protident> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080 ;
@@ -385269,7 +405492,7 @@ a: ProtFold-DFG is based on the DeepSVM-fold(CCM), DeepSVM-fold(PSFM), MotifCNN-
     sc:url "http://www.csbio.sjtu.edu.cn/bioinf/Protease/" .
 
 <https://bio.tools/protinfo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -385292,7 +405515,7 @@ a: ProtFold-DFG is based on the DeepSVM-fold(CCM), DeepSVM-fold(PSFM), MotifCNN-
     biotools:primaryContact "Protinfo Support" .
 
 <https://bio.tools/protinfo_ppc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0128,
@@ -385316,18 +405539,15 @@ a: ProtFold-DFG is based on the DeepSVM-fold(CCM), DeepSVM-fold(PSFM), MotifCNN-
 
 <https://bio.tools/protist_guru> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3754" ;
-            sc:name "GO-term enrichment data" ;
-            sc:sameAs "http://edamontology.org/data_3754" ],
+            sc:additionalType "http://edamontology.org/data_1027" ;
+            sc:name "Gene ID (NCBI)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1027" ;
-            sc:name "Gene ID (NCBI)" ;
-            sc:sameAs "http://edamontology.org/data_1027" ],
+            sc:additionalType "http://edamontology.org/data_3754" ;
+            sc:name "GO-term enrichment data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2757" ;
-            sc:name "Pfam domain name" ;
-            sc:sameAs "http://edamontology.org/data_2757" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2757" ;
+            sc:name "Pfam domain name" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0621,
@@ -385349,22 +405569,22 @@ a: ProtFold-DFG is based on the DeepSVM-fold(CCM), DeepSVM-fold(PSFM), MotifCNN-
 
 <https://bio.tools/protk> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ],
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_3655" ;
+            sc:name "Peptide identification" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1233" ;
-            sc:name "Sequence set (protein)" ;
-            sc:sameAs "http://edamontology.org/data_1233" ] ;
+            sc:additionalType "http://edamontology.org/data_1233" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence set (protein)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Gene expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ],
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_3655" ;
+            sc:name "Peptide identification" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Gene expression data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121 ;
     sc:description "Protk is a suite of tools for proteomics. It aims to present a simple and consistent command-line interface across otherwise disparate third party tools." ;
@@ -385380,7 +405600,7 @@ a: ProtFold-DFG is based on the DeepSVM-fold(CCM), DeepSVM-fold(PSFM), MotifCNN-
     biotools:primaryContact "Ira Cook" .
 
 <https://bio.tools/protlego> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0130,
         edam:topic_0736,
         edam:topic_3299 ;
@@ -385399,7 +405619,7 @@ Search for related Entries in the Database: Submit Examples: 1pky, c.23, Flavodo
     sc:url "https://hoecker-lab.github.io/protlego/" .
 
 <https://bio.tools/protmax> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0121,
@@ -385412,8 +405632,32 @@ Search for related Entries in the Database: Submit Examples: 1pky, c.23, Flavodo
     sc:softwareHelp <http://mosys.univie.ac.at/resources/software/> ;
     sc:url "http://www.univie.ac.at/mosys/software.html" .
 
+<https://bio.tools/protnaff> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Library" ;
+    sc:applicationSubCategory edam:topic_0097,
+        edam:topic_0099,
+        edam:topic_0154,
+        edam:topic_0593,
+        edam:topic_0749 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC430>,
+        "pubmed:35775902" ;
+    sc:description "Protein-bound Nucleic Acid filters and fragment libraries (protNAff) is a tool to create filters that select structures of Protein - Nucleic acids complexes from the PDB and to build libraries of protein-bound RNA fragments." ;
+    sc:featureList edam:operation_1812,
+        edam:operation_2518,
+        edam:operation_3695,
+        edam:operation_4009 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "protNAff" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://colab.research.google.com/github/isaureCdB/ProtNAff/blob/master/filtering-clustering.ipynb" .
+
 <https://bio.tools/protobug> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0219,
         edam:topic_0623 ;
@@ -385431,7 +405675,7 @@ Search for related Entries in the Database: Submit Examples: 1pky, c.23, Flavodo
     biotools:primaryContact "Contact form" .
 
 <https://bio.tools/protocaller> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3318,
         edam:topic_3892 ;
     sc:citation <https://doi.org/10.1021/ACS.JCIM.9B01158>,
@@ -385447,7 +405691,7 @@ ProtoCaller is a Python library which enables controlled automation of relative
     sc:url "https://github.com/protocaller/protocaller" .
 
 <https://bio.tools/protocolnavigator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0078,
@@ -385463,7 +405707,7 @@ ProtoCaller is a Python library which enables controlled automation of relative
     sc:url "http://protocolnavigator.org/" .
 
 <https://bio.tools/protomap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0121,
@@ -385485,30 +405729,30 @@ ProtoCaller is a Python library which enables controlled automation of relative
 
 <https://bio.tools/protomata> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ],
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2071" ;
-            sc:name "Sequence motif (protein)" ;
-            sc:sameAs "http://edamontology.org/data_2071" ],
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
+            sc:additionalType "http://edamontology.org/data_2071" ;
+            sc:encodingFormat "http://edamontology.org/format_2068" ;
+            sc:name "Sequence motif (protein)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0858" ;
-            sc:name "Sequence signature matches" ;
-            sc:sameAs "http://edamontology.org/data_0858" ],
+            sc:additionalType "http://edamontology.org/data_2071" ;
+            sc:encodingFormat "http://edamontology.org/format_2068" ;
+            sc:name "Sequence motif (protein)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1384" ;
-            sc:name "Sequence alignment (protein)" ;
-            sc:sameAs "http://edamontology.org/data_1384" ],
+            sc:additionalType "http://edamontology.org/data_1384" ;
+            sc:encodingFormat "http://edamontology.org/format_2554" ;
+            sc:name "Sequence alignment (protein)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2071" ;
-            sc:name "Sequence motif (protein)" ;
-            sc:sameAs "http://edamontology.org/data_2071" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0858" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Sequence signature matches" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
@@ -385530,22 +405774,20 @@ ProtoCaller is a Python library which enables controlled automation of relative
 
 <https://bio.tools/protonet> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3021" ;
-            sc:name "UniProt accession" ;
-            sc:sameAs "http://edamontology.org/data_3021" ],
+            sc:additionalType "http://edamontology.org/data_3021" ;
+            sc:name "UniProt accession" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3021" ;
-            sc:name "UniProt accession" ;
-            sc:sameAs "http://edamontology.org/data_3021" ] ;
+            sc:additionalType "http://edamontology.org/data_3021" ;
+            sc:name "UniProt accession" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0907" ;
-            sc:name "Protein family report" ;
-            sc:sameAs "http://edamontology.org/data_0907" ],
+            sc:additionalType "http://edamontology.org/data_0907" ;
+            sc:encodingFormat "http://edamontology.org/format_1978" ;
+            sc:name "Protein family report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0907" ;
-            sc:name "Protein family report" ;
-            sc:sameAs "http://edamontology.org/data_0907" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0907" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Protein family report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0623 ;
     sc:citation <https://doi.org/10.1093/nar/gkr1027> ;
@@ -385560,22 +405802,22 @@ ProtoCaller is a Python library which enables controlled automation of relative
 
 <https://bio.tools/protoss> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ],
+            sc:additionalType "http://edamontology.org/data_1461" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein-ligand complex" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1461" ;
-            sc:name "Protein-ligand complex" ;
-            sc:sameAs "http://edamontology.org/data_1461" ] ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein structure" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1461" ;
-            sc:name "Protein-ligand complex" ;
-            sc:sameAs "http://edamontology.org/data_1461" ],
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein structure" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1461" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein-ligand complex" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0602 ;
@@ -385592,8 +405834,32 @@ ProtoCaller is a Python library which enables controlled automation of relative
     sc:softwareHelp <http://proteinsplus.zbh.uni-hamburg.de/help/index> ;
     sc:url "http://proteinsplus.zbh.uni-hamburg.de/#protoss" .
 
+<https://bio.tools/prototheca-id> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0219,
+        edam:topic_0621,
+        edam:topic_0659,
+        edam:topic_0780,
+        edam:topic_3324 ;
+    sc:citation <https://doi.org/10.1093/DATABASE/BAAB073>,
+        "pmcid:PMC8607299",
+        "pubmed:34791104" ;
+    sc:description "A web-based application for molecular identification of Prototheca species." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3431,
+        edam:operation_3460,
+        edam:operation_3695 ;
+    sc:isAccessibleForFree true ;
+    sc:name "Prototheca-ID" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://prototheca-id.org" .
+
 <https://bio.tools/protox> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0154,
@@ -385616,7 +405882,7 @@ ProtoCaller is a Python library which enables controlled automation of relative
     biotools:primaryContact "Contact list" .
 
 <https://bio.tools/protparam> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -385643,7 +405909,7 @@ ProtoCaller is a Python library which enables controlled automation of relative
     biotools:primaryContact "ProtParam Contact Form" .
 
 <https://bio.tools/protphylo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0622,
@@ -385663,8 +405929,30 @@ ProtoCaller is a Python library which enables controlled automation of relative
     biotools:primaryContact "Dr. Fabiana Perocchi",
         "Dr. Yiming Cheng" .
 
+<https://bio.tools/protposer> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0108,
+        edam:topic_0130,
+        edam:topic_0199,
+        edam:topic_0736,
+        edam:topic_3297 ;
+    sc:citation <https://doi.org/10.1016/J.CSBJ.2022.05.008>,
+        "pmcid:PMC9133766",
+        "pubmed:35664235" ;
+    sc:description "The web server that readily proposes protein stabilizing mutations with high PPV." ;
+    sc:featureList edam:operation_0331,
+        edam:operation_3659,
+        edam:operation_4008 ;
+    sc:isAccessibleForFree true ;
+    sc:name "Protposer" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://webapps.bifi.es/the-protposer" .
+
 <https://bio.tools/protpy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0123,
@@ -385680,7 +405968,7 @@ ProtoCaller is a Python library which enables controlled automation of relative
     sc:url "https://code.google.com/p/protpy/" .
 
 <https://bio.tools/protr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -385696,7 +405984,7 @@ ProtoCaller is a Python library which enables controlled automation of relative
     sc:url "http://cran.r-project.org/web/packages/protr/index.html" .
 
 <https://bio.tools/protrack> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_2640,
         edam:topic_3173,
@@ -385714,10 +406002,10 @@ The Clinical Proteomic Tumor Analysis Consortium (CPTAC) initiative has generate
 
 <https://bio.tools/protre-cn> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0623,
@@ -385736,7 +406024,7 @@ The Clinical Proteomic Tumor Analysis Consortium (CPTAC) initiative has generate
     sc:url "http://bliulab.net/ProtRe-CN" .
 
 <https://bio.tools/protsav> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0081,
@@ -385754,7 +406042,7 @@ The Clinical Proteomic Tumor Analysis Consortium (CPTAC) initiative has generate
     sc:url "http://www.scfbio-iitd.res.in/software/proteomics/protsav.jsp" .
 
 <https://bio.tools/protscale> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -385771,7 +406059,7 @@ The Clinical Proteomic Tumor Analysis Consortium (CPTAC) initiative has generate
     biotools:primaryContact "ExPASy helpdesk" .
 
 <https://bio.tools/protscreen> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
         edam:topic_0154,
@@ -385789,7 +406077,7 @@ NIGEBProtScreen Reporting System.""" ;
     sc:url "http://nigebprotscreen.com/" .
 
 <https://bio.tools/protspom> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0130,
         edam:topic_0154,
         edam:topic_0199,
@@ -385812,7 +406100,7 @@ ProTSPoM execuatable ProTSPoM benchmark data.""" ;
     sc:url "http://cosmos.iitkgp.ac.in/ProTSPoM/" .
 
 <https://bio.tools/protsweep> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1093/nar/gkm364> ;
@@ -385827,22 +406115,22 @@ ProTSPoM execuatable ProTSPoM benchmark data.""" ;
 
 <https://bio.tools/protter> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3021" ;
-            sc:name "UniProt accession" ;
-            sc:sameAs "http://edamontology.org/data_3021" ],
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:encodingFormat "http://edamontology.org/format_2547" ;
+            sc:name "Protein features" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ],
+            sc:additionalType "http://edamontology.org/data_3021" ;
+            sc:encodingFormat "http://edamontology.org/format_2547" ;
+            sc:name "UniProt accession" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_2547" ;
+            sc:name "Protein sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1709" ;
-            sc:name "Protein secondary structure image" ;
-            sc:sameAs "http://edamontology.org/data_1709" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1709" ;
+            sc:encodingFormat "http://edamontology.org/format_3604" ;
+            sc:name "Protein secondary structure image" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0128,
@@ -385865,14 +406153,17 @@ ProTSPoM execuatable ProTSPoM benchmark data.""" ;
     sc:url "http://wlab.ethz.ch/protter/" .
 
 <https://bio.tools/prottest> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0084,
         edam:topic_0154,
         edam:topic_3293,
         edam:topic_3678 ;
-    sc:citation "pubmed:15647292" ;
+    sc:citation <https://doi.org/10.1093/bioinformatics/btr088>,
+        "pmcid:PMC5215816",
+        "pubmed:15647292",
+        "pubmed:21335321" ;
     sc:description "ProtTest is a program that determines the best-fit model of evolution, among a set of candidate models, for a given protein sequence alignment." ;
     sc:featureList edam:operation_0292,
         edam:operation_0331,
@@ -385889,7 +406180,7 @@ ProTSPoM execuatable ProTSPoM benchmark data.""" ;
         "F. Abascal" .
 
 <https://bio.tools/prottrans> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0218,
         edam:topic_2229,
@@ -385915,14 +406206,14 @@ ProTSPoM execuatable ProTSPoM benchmark data.""" ;
 
 <https://bio.tools/protview> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -385943,7 +406234,7 @@ ProTSPoM execuatable ProTSPoM benchmark data.""" ;
     sc:url "https://github.com/SSPuliasis/ProtView" .
 
 <https://bio.tools/protyquant> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
         edam:topic_0154,
@@ -385960,7 +406251,7 @@ Comparing multiple label-free shotgun proteomics datasets requires various data
     sc:url "https://bitbucket.org/lababi/protyquant" .
 
 <https://bio.tools/provean> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3120 ;
@@ -385977,7 +406268,7 @@ Comparing multiple label-free shotgun proteomics datasets requires various data
     sc:url "http://provean.jcvi.org/index.php" .
 
 <https://bio.tools/provision> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
         edam:topic_0769 ;
@@ -385993,7 +406284,7 @@ Comparing multiple label-free shotgun proteomics datasets requires various data
     sc:url "https://provision.shinyapps.io/provision/" .
 
 <https://bio.tools/prowl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0121,
@@ -386015,7 +406306,7 @@ Comparing multiple label-free shotgun proteomics datasets requires various data
     biotools:primaryContact "Brian T. Chait" .
 
 <https://bio.tools/prowler> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0102,
@@ -386031,27 +406322,7 @@ Comparing multiple label-free shotgun proteomics datasets requires various data
     biotools:primaryContact <https://orcid.org/0000-0002-7521-3671> .
 
 <https://bio.tools/proxdist> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
-    sc:applicationSubCategory edam:topic_0102,
-        edam:topic_3315,
-        edam:topic_3474 ;
-    sc:citation "pmcid:PMC6812563",
-        "pubmed:31649491" ;
-    sc:description """Proximal Distance Algorithms.
-
-Code for the numerical experiments from manuscripts for the proximal distance algorithm.
-
-This repository contains example code from the following papers about the proximal distance algorithm:.
-
-KL Keys, H Zhou, K Lange. (2017) Proximal Distance Algorithms: Theory and Examples. (arXiv).
-
-K Lange and KL Keys. (2014) The proximal distance algorithm. Proceedings of the 2014 International Conference of Mathematics 4, 95-116. (arXiv)""" ;
-    sc:featureList edam:operation_3802,
-        edam:operation_3891 ;
-    sc:name "proximal distance algorithms" ;
-    sc:url "https://github.com/klkeys/proxdist" .
-
-<https://bio.tools/proximal_distance_algorithms> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3315,
         edam:topic_3474 ;
@@ -386073,18 +406344,16 @@ K Lange and KL Keys. (2014) The proximal distance algorithm. Proceedings of the
 
 <https://bio.tools/proximid> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3112" ;
-            sc:name "Gene expression matrix" ;
-            sc:sameAs "http://edamontology.org/data_3112" ] ;
+            sc:additionalType "http://edamontology.org/data_3112" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Gene expression matrix" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2655" ;
-            sc:name "Cell type identifier" ;
-            sc:sameAs "http://edamontology.org/data_2655" ],
+            sc:additionalType "http://edamontology.org/data_2655" ;
+            sc:name "Cell type identifier" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2229,
@@ -386099,18 +406368,18 @@ K Lange and KL Keys. (2014) The proximal distance algorithm. Proceedings of the
 
 <https://bio.tools/proxl> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0906" ;
-            sc:name "Protein interaction data" ;
-            sc:sameAs "http://edamontology.org/data_0906" ] ;
+            sc:additionalType "http://edamontology.org/data_0906" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Protein interaction data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ],
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:encodingFormat "http://edamontology.org/format_3604" ;
+            sc:name "Protein features" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_3604" ;
+            sc:name "Protein structure" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0128 ;
@@ -386131,7 +406400,7 @@ K Lange and KL Keys. (2014) The proximal distance algorithm. Proceedings of the
     sc:url "https://github.com/yeastrc/proxl-web-app" .
 
 <https://bio.tools/prpred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0736,
@@ -386151,14 +406420,14 @@ prPred is an open-source Python-based toolkit, which operates depending on the P
 
 <https://bio.tools/prpred-drlf> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
@@ -386178,8 +406447,40 @@ prPred is an open-source Python-based toolkit, which operates depending on the P
         "Windows" ;
     sc:url "http://39.100.246.211:5001/prPred-DRLF" .
 
+<https://bio.tools/prrdb> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:citation <https://doi.org/10.1186/1471-2164-9-180>,
+        "pmcid:PMC2346480",
+        "pubmed:18423032" ;
+    sc:description "PRRDB is a database of pattern recognition receptors and their ligands." ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "Prrdb" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/prrdb/info.html> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/prrdb/info.html" .
+
+<https://bio.tools/prrdb2> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:citation <https://doi.org/10.1093/database/baz076>,
+        "pmcid:PMC6597477",
+        "pubmed:31250014" ;
+    sc:description "PRRDB2.0 is a comprehensive database of pattern recognition receptors and their ligands. This is an updated version of the database PRRDB." ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "prrdb2" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/prrdb2/index.html> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/prrdb2/index.html" .
+
 <https://bio.tools/prsice> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_2885,
@@ -386197,7 +406498,7 @@ prPred is an open-source Python-based toolkit, which operates depending on the P
     sc:url "http://prsice.info/" .
 
 <https://bio.tools/prsice-2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0199 ;
     sc:description "Polygenic Risk Score software for calculating, applying, evaluating and plotting the results of polygenic risk scores (PRS) analyses" ;
     sc:featureList edam:operation_0550,
@@ -386206,7 +406507,7 @@ prPred is an open-source Python-based toolkit, which operates depending on the P
     sc:url "https://www.prsice.info/" .
 
 <https://bio.tools/prskb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0625,
@@ -386229,7 +406530,7 @@ prPred is an open-source Python-based toolkit, which operates depending on the P
     sc:url "https://prs.byu.edu" .
 
 <https://bio.tools/prunetree> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_3293 ;
@@ -386241,7 +406542,7 @@ prPred is an open-source Python-based toolkit, which operates depending on the P
     sc:url "http://lajeunesse.myweb.usf.edu/publications.html" .
 
 <https://bio.tools/prynt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
         edam:topic_0634,
@@ -386261,7 +406562,7 @@ prPred is an open-source Python-based toolkit, which operates depending on the P
     biotools:primaryContact "Julie Klein" .
 
 <https://bio.tools/ps2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -386283,7 +406584,7 @@ prPred is an open-source Python-based toolkit, which operates depending on the P
     biotools:primaryContact "Jinn-Moon Yang" .
 
 <https://bio.tools/ps2-v3> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -386302,7 +406603,7 @@ prPred is an open-source Python-based toolkit, which operates depending on the P
     sc:url "http://ps2v3.life.nctu.edu.tw/" .
 
 <https://bio.tools/ps4dr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0769,
         edam:topic_3336,
@@ -386325,7 +406626,7 @@ This package comprises a modular workflow designed to identify drug repositionin
     sc:url "https://github.com/ps4dr/ps4dr" .
 
 <https://bio.tools/psSubpathway> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2640,
         edam:topic_3360 ;
@@ -386344,7 +406645,7 @@ A network-based systems biology tool for flexible identification of phenotype-sp
     sc:url "https://cran.r-project.org/web/packages/psSubpathway/" .
 
 <https://bio.tools/ps_scan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121 ;
     sc:citation "pubmed:15130850" ;
@@ -386360,7 +406661,7 @@ A network-based systems biology tool for flexible identification of phenotype-sp
     sc:url "http://prosite.expasy.org/scanprosite/" .
 
 <https://bio.tools/ps_snp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2885,
         edam:topic_3053,
@@ -386377,7 +406678,7 @@ A network-based systems biology tool for flexible identification of phenotype-sp
     sc:url "http://engr.case.edu/li_jing/PS_SNP.html" .
 
 <https://bio.tools/psa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0736,
@@ -386399,7 +406700,7 @@ A network-based systems biology tool for flexible identification of phenotype-sp
     sc:url "http://bmerc-www.bu.edu/psa/request.htm" .
 
 <https://bio.tools/psa-failure-detection> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_2640 ;
@@ -386415,7 +406716,7 @@ A network-based systems biology tool for flexible identification of phenotype-sp
     biotools:primaryContact "Rex Cheung" .
 
 <https://bio.tools/psafe> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3168,
@@ -386431,7 +406732,7 @@ A network-based systems biology tool for flexible identification of phenotype-sp
     sc:url "http://zhaocenter.org/software/#Genomic_Protein_Sequence_Analysis" .
 
 <https://bio.tools/psamm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3172 ;
@@ -386447,7 +406748,7 @@ A network-based systems biology tool for flexible identification of phenotype-sp
     biotools:primaryContact "Ying Zhang" .
 
 <https://bio.tools/psar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3512,
@@ -386462,7 +406763,7 @@ A network-based systems biology tool for flexible identification of phenotype-sp
     sc:url "http://bioen-compbio.bioen.illinois.edu/psar" .
 
 <https://bio.tools/psaweb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080 ;
@@ -386476,10 +406777,24 @@ A network-based systems biology tool for flexible identification of phenotype-sp
         "Mac",
         "Windows" ;
     sc:softwareHelp <http://crdd.osdd.net/raghava/psa/help.html> ;
-    sc:url "http://www.imtech.res.in/raghava/psa/" .
+    sc:url "http://webs.iiitd.edu.in/raghava/psa/" .
+
+<https://bio.tools/psaweb_analysis_of_protein_sequence_and_multiple_alignment> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:citation <https://doi.org/10.1089/152791601317205442> ;
+    sc:description "PSAweb is a web server, developed to analyze the amino acid sequence and multiple sequence alignment of proteins." ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "PSAweb: Analysis of Protein Sequence and Multiple Alignment" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/psa/> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/psa/" .
 
 <https://bio.tools/psb-app> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0208,
         edam:topic_2640 ;
@@ -386490,7 +406805,7 @@ A network-based systems biology tool for flexible identification of phenotype-sp
     sc:url "https://qingzliu.shinyapps.io/psb-app/" .
 
 <https://bio.tools/psbp-svm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0121,
         edam:topic_0154,
@@ -386510,7 +406825,7 @@ Predicting Polystyrene Binding Peptides.""" ;
     sc:url "http://server.malab.cn/PSBP-SVM/index.jsp" .
 
 <https://bio.tools/psc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0166,
@@ -386527,7 +406842,7 @@ Predicting Polystyrene Binding Peptides.""" ;
     sc:url "http://pocket.uchicago.edu/psc/" .
 
 <https://bio.tools/psc-db> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0780,
         edam:topic_2275,
@@ -386550,14 +406865,12 @@ Predicting Polystyrene Binding Peptides.""" ;
 
 <https://bio.tools/pscan> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2886" ;
-            sc:name "Protein sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2886" ] ;
+            sc:additionalType "http://edamontology.org/data_2886" ;
+            sc:name "Protein sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0869" ;
-            sc:name "Sequence-profile alignment" ;
-            sc:sameAs "http://edamontology.org/data_0869" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0869" ;
+            sc:name "Sequence-profile alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0160 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -386589,7 +406902,7 @@ Predicting Polystyrene Binding Peptides.""" ;
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/pscan.html" .
 
 <https://bio.tools/pscan-chip> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0654,
@@ -386605,7 +406918,7 @@ Predicting Polystyrene Binding Peptides.""" ;
     sc:url "http://www.beaconlab.it/pscan_chip_dev/" .
 
 <https://bio.tools/pscan2020> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0130,
         edam:topic_0153,
         edam:topic_0634,
@@ -386633,14 +406946,14 @@ PSCAN package has the main PSCAN function that implements protein-structure-guid
 
 <https://bio.tools/pscanchip> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2012" ;
-            sc:name "Sequence coordinates" ;
-            sc:sameAs "http://edamontology.org/data_2012" ] ;
+            sc:additionalType "http://edamontology.org/data_2012" ;
+            sc:encodingFormat "http://edamontology.org/format_3003" ;
+            sc:name "Sequence coordinates" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2755" ;
-            sc:name "Transcription factor name" ;
-            sc:sameAs "http://edamontology.org/data_2755" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2755" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Transcription factor name" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0160 ;
@@ -386661,7 +406974,7 @@ PSCAN package has the main PSCAN function that implements protein-structure-guid
         "Giulio Pavesi" .
 
 <https://bio.tools/psdx> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0780,
@@ -386687,7 +407000,7 @@ PSCAN package has the main PSCAN function that implements protein-structure-guid
     sc:url "http://forestry.fafu.edu.cn/db/SDX" .
 
 <https://bio.tools/pse-analysis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -386708,7 +407021,7 @@ PSCAN package has the main PSCAN function that implements protein-structure-guid
     biotools:primaryContact "Bin Liu" .
 
 <https://bio.tools/pse-in-one> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0081,
@@ -386729,14 +407042,14 @@ PSCAN package has the main PSCAN function that implements protein-structure-guid
 
 <https://bio.tools/psea> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3112" ;
-            sc:name "Gene expression matrix" ;
-            sc:sameAs "http://edamontology.org/data_3112" ] ;
+            sc:additionalType "http://edamontology.org/data_3112" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "Gene expression matrix" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -386757,8 +407070,27 @@ PSCAN package has the main PSCAN function that implements protein-structure-guid
     sc:url "http://bioconductor.org/packages/release/bioc/html/PSEA.html" ;
     biotools:primaryContact "Alexandre Kuhn" .
 
+<https://bio.tools/psea_ensemble> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0089,
+        edam:topic_0102,
+        edam:topic_0625,
+        edam:topic_0634,
+        edam:topic_3168 ;
+    sc:citation <https://doi.org/10.1101/2021.10.13.464308> ;
+    sc:description "A phenotypic similarity ensemble approach for prioritizes candidate genes to aid mendelian disease diagnosis." ;
+    sc:featureList edam:operation_0337 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "PSEA" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://phoenix.bgi.com/psea" .
+
 <https://bio.tools/pseaac> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -386776,8 +407108,37 @@ PSCAN package has the main PSCAN function that implements protein-structure-guid
     sc:softwareHelp <http://www.csbio.sjtu.edu.cn/bioinf/PseAAC/PseAAReadme.htm> ;
     sc:url "http://www.csbio.sjtu.edu.cn/bioinf/PseAAC/" .
 
+<https://bio.tools/pseapred> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:citation <https://doi.org/10.1186/1471-2105-9-201>,
+        "pmcid:PMC2358896",
+        "pubmed:18416838" ;
+    sc:description "This is a web-server for predicting proteins secreted by Malarial Parasite P.falciparum into infected-erythrocyte." ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "pseapred" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/pseapred/> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/pseapred/" .
+
+<https://bio.tools/pseapred2> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:description "Prediction of Plasmodium Secretory and Infected Erythrocyte Associated Proteins." ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "pseapred2" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/pseapred2/> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/pseapred2/" .
+
 <https://bio.tools/pseknc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -386793,8 +407154,29 @@ PSCAN package has the main PSCAN function that implements protein-structure-guid
     sc:softwareHelp <http://lin.uestc.edu.cn/pseknc/readme.html> ;
     sc:url "http://lin.uestc.edu.cn/pseknc/default.aspx" .
 
+<https://bio.tools/pseudeep> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0099,
+        edam:topic_0121,
+        edam:topic_3170,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.3389/FGENE.2021.773882>,
+        "pmcid:PMC8637112",
+        "pubmed:34868261" ;
+    sc:description "RNA Pseudouridine Site Identification with Deep Learning Algorithm." ;
+    sc:featureList edam:operation_3927,
+        edam:operation_3937 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "PseUdeep" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/dan111262/PseUdeep" .
+
 <https://bio.tools/pseudo-b-mode-ultrasound-image-simulator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -386812,24 +407194,8 @@ PSCAN package has the main PSCAN function that implements protein-structure-guid
     sc:url "https://www.mathworks.com/matlabcentral/fileexchange/34199-pseudo-b-mode-ultrasound-image-simulator" ;
     biotools:primaryContact "Debdoot Sheet" .
 
-<https://bio.tools/pseudo-data> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_2269,
-        edam:topic_2840,
-        edam:topic_3678 ;
-    sc:citation <https://doi.org/10.1101/810408> ;
-    sc:description """Pseudo-data generation allows the statistical re-evaluation of toxicological bioassays based on summary statistics.
-
-Abstract Sometimes a re-analysis of toxicological data is useful. However, this usually requires the availability of the original data and in many cases only summary data are available in the publications. Here the generation of pseudo-data under certain assumptions using extension packages in the open-source project R on statistical computing is shown. Several case studies are used to illustrate the applicability in regulatory toxicology.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'toxicological', 'bioassays', 're-evaluation', 'open-source'""" ;
-    sc:featureList edam:operation_3435 ;
-    sc:name "pseudo-data" ;
-    sc:url "https://doi.org/10.1101/810408" .
-
 <https://bio.tools/pseudoQC> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3172,
         edam:topic_3520 ;
@@ -386844,7 +407210,7 @@ Abstract Sometimes a re-analysis of toxicological data is useful. However, this
     sc:url "https://www.omicsolution.org/wukong/pseudoQC/" .
 
 <https://bio.tools/pseudobase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0196,
         edam:topic_0621,
@@ -386864,22 +407230,20 @@ Searchable genome sequences of Drosophila pseudoobscura subgroup species.""" ;
 
 <https://bio.tools/pseudocap> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2744" ;
-            sc:name "Locus ID (PseudoCAP)" ;
-            sc:sameAs "http://edamontology.org/data_2744" ],
+            sc:additionalType "http://edamontology.org/data_2744" ;
+            sc:name "Locus ID (PseudoCAP)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2314" ;
-            sc:name "GI number" ;
-            sc:sameAs "http://edamontology.org/data_2314" ] ;
+            sc:additionalType "http://edamontology.org/data_2314" ;
+            sc:name "GI number" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0916" ;
-            sc:name "Gene report" ;
-            sc:sameAs "http://edamontology.org/data_0916" ],
+            sc:additionalType "http://edamontology.org/data_0916" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Gene report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0916" ;
-            sc:name "Gene report" ;
-            sc:sameAs "http://edamontology.org/data_0916" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0916" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Gene report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0621 ;
     sc:citation <https://doi.org/10.1093/nar/gkq869>,
@@ -386896,7 +407260,7 @@ Searchable genome sequences of Drosophila pseudoobscura subgroup species.""" ;
     sc:url "http://www.pseudomonas.com/" .
 
 <https://bio.tools/pseudochecker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0199,
         edam:topic_0203,
@@ -386914,7 +407278,7 @@ Searchable genome sequences of Drosophila pseudoobscura subgroup species.""" ;
     sc:url "http://pseudochecker.ciimar.up.pt" .
 
 <https://bio.tools/pseudodomain> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654 ;
@@ -386927,8 +407291,51 @@ Searchable genome sequences of Drosophila pseudoobscura subgroup species.""" ;
     sc:softwareVersion "20130916" ;
     sc:url "http://sourceforge.net/projects/pseudodomain/" .
 
+<https://bio.tools/pseudodrift> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0593,
+        edam:topic_0780,
+        edam:topic_3172,
+        edam:topic_3520 ;
+    sc:citation <https://doi.org/10.3390/METABO12050435>,
+        "pmcid:PMC9144304",
+        "pubmed:35629939" ;
+    sc:description "Normalizing and Correcting Variable and Complex LC-MS Metabolomic Data with the R Package pseudoDrift." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3435,
+        edam:operation_3659 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "pseudoDrift" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://www.mdpi.com/article/10.3390/metabo12050435/s1> ;
+    sc:url "https://github.com/jrod55/pseudoDrift" .
+
+<https://bio.tools/pseudofinder> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0199,
+        edam:topic_0610,
+        edam:topic_0621,
+        edam:topic_0622 ;
+    sc:citation <https://doi.org/10.1101/2021.10.07.463580> ;
+    sc:description "Pseudofinder is a bioinformatics tool that detects pseudogene candidates from annotated genbank files of bacterial and archaeal genomes." ;
+    sc:featureList edam:operation_3227 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "Pseudofinder" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://github.com/filip-husnik/pseudofinder/wiki> ;
+    sc:url "https://github.com/filip-husnik/pseudofinder" .
+
 <https://bio.tools/pseudoga> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0204,
@@ -386955,7 +407362,7 @@ The package pseudoga can be used to perform pseudotime analysis on single cell g
     sc:url "https://github.com/indranillab/pseudoga" .
 
 <https://bio.tools/pseudomap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0659,
@@ -386975,7 +407382,7 @@ The package pseudoga can be used to perform pseudotime analysis on single cell g
     biotools:primaryContact "Support" .
 
 <https://bio.tools/pseudomonas_genome_database> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0621,
@@ -386998,7 +407405,7 @@ The package pseudoga can be used to perform pseudotime analysis on single cell g
     biotools:primaryContact "Pseudomonas aeruginosa Community Annotation Project (PseudoCAP)" .
 
 <https://bio.tools/pseudomonas_genome_project> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0621,
@@ -387021,7 +407428,7 @@ The package pseudoga can be used to perform pseudotime analysis on single cell g
     biotools:primaryContact "Pseudomonas Genome DB Support" .
 
 <https://bio.tools/pseudotimede> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
         edam:topic_2229,
@@ -387042,7 +407449,7 @@ The package pseudoga can be used to perform pseudotime analysis on single cell g
     biotools:primaryContact "Jingyi Jessica Li" .
 
 <https://bio.tools/pseudoviewer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0097,
@@ -387067,7 +407474,7 @@ The package pseudoga can be used to perform pseudotime analysis on single cell g
     biotools:primaryContact "PseudoViewer3 Support" .
 
 <https://bio.tools/psi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -387085,23 +407492,21 @@ The package pseudoga can be used to perform pseudotime analysis on single cell g
 
 <https://bio.tools/psi-blast> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:name "Protein sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0857" ;
-            sc:name "Sequence search results" ;
-            sc:sameAs "http://edamontology.org/data_0857" ],
+            sc:additionalType "http://edamontology.org/data_2854" ;
+            sc:name "Position-specific scoring matrix" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2854" ;
-            sc:name "Position-specific scoring matrix" ;
-            sc:sameAs "http://edamontology.org/data_2854" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0857" ;
+            sc:name "Sequence search results" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
-    sc:author "Web Production" ;
+    sc:author "Job Dispatcher" ;
     sc:citation <https://doi.org/10.1006/jmbi.1999.3233>,
         <https://doi.org/10.1093/nar/25.17.3389>,
+        <https://doi.org/10.1093/nar/gkac240>,
         "pubmed:10547299" ;
     sc:description "Iterative protein sequence similarity search based on BLAST: search with a custom, position-specific, scoring matrix which can help find distant evolutionary relationships." ;
     sc:featureList edam:operation_0346 ;
@@ -387115,18 +407520,16 @@ The package pseudoga can be used to perform pseudotime analysis on single cell g
         <http://www.ebi.ac.uk/about/terms-of-use> ;
     sc:softwareVersion "1" ;
     sc:url "http://www.ebi.ac.uk/Tools/sss/psiblast/" ;
-    biotools:primaryContact "Web Production" .
+    biotools:primaryContact "Job Dispatcher Team" .
 
 <https://bio.tools/psi-blast_rest> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0857" ;
-            sc:name "Sequence search results" ;
-            sc:sameAs "http://edamontology.org/data_0857" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0857" ;
+            sc:name "Sequence search results" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1093/nar/25.17.3389> ;
@@ -387142,14 +407545,14 @@ The package pseudoga can be used to perform pseudotime analysis on single cell g
 
 <https://bio.tools/psi-mi_validator> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0906" ;
-            sc:name "Protein interaction data" ;
-            sc:sameAs "http://edamontology.org/data_0906" ] ;
+            sc:additionalType "http://edamontology.org/data_0906" ;
+            sc:encodingFormat "http://edamontology.org/format_3243" ;
+            sc:name "Protein interaction data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:author "IntAct team" ;
@@ -387168,7 +407571,7 @@ The package pseudoga can be used to perform pseudotime analysis on single cell g
     biotools:primaryContact "Marine Dumousseau" .
 
 <https://bio.tools/psi-mouse> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_3125,
         edam:topic_3308,
@@ -387193,23 +407596,21 @@ High-accuracy predictor for mouse Ψ site identification.""" ;
 
 <https://bio.tools/psi-search> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:name "Protein sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0857" ;
-            sc:name "Sequence search results" ;
-            sc:sameAs "http://edamontology.org/data_0857" ],
+            sc:additionalType "http://edamontology.org/data_0857" ;
+            sc:name "Sequence search results" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2854" ;
-            sc:name "Position-specific scoring matrix" ;
-            sc:sameAs "http://edamontology.org/data_2854" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2854" ;
+            sc:name "Position-specific scoring matrix" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:author "Bill Pearson",
-        "Web Production" ;
-    sc:citation <https://doi.org/10.1093/bioinformatics/bts240> ;
+        "Job Dispatcher" ;
+    sc:citation <https://doi.org/10.1093/bioinformatics/bts240>,
+        <https://doi.org/10.1093/nar/gkac240> ;
     sc:description "Iterative protein sequence similarity search based on Smith & Waterman algorithm with PSI-BLAST profile construction : find distantly related protein sequences." ;
     sc:featureList edam:operation_0346 ;
     sc:name "PSI-Search (EBI)" ;
@@ -387222,10 +407623,10 @@ High-accuracy predictor for mouse Ψ site identification.""" ;
         <http://www.ebi.ac.uk/about/terms-of-use> ;
     sc:softwareVersion "1" ;
     sc:url "http://www.ebi.ac.uk/Tools/sss/psisearch/" ;
-    biotools:primaryContact "Web Production" .
+    biotools:primaryContact "Job Dispatcher Team" .
 
 <https://bio.tools/psi-search_rest> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/bts240> ;
@@ -387240,7 +407641,7 @@ High-accuracy predictor for mouse Ψ site identification.""" ;
     sc:url "http://www.ebi.ac.uk/Tools/webservices/services/sss/psisearch_rest" .
 
 <https://bio.tools/psi4> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3314,
         edam:topic_3315 ;
@@ -387256,7 +407657,7 @@ Psi4 is an open-source suite of ab initio quantum chemistry programs designed fo
     sc:url "https://github.com/psi4/psi4" .
 
 <https://bio.tools/psichomics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_2640,
@@ -387284,7 +407685,7 @@ Psi4 is an open-source suite of ab initio quantum chemistry programs designed fo
     biotools:primaryContact "Nuno Agostinho" .
 
 <https://bio.tools/psicquic> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -387304,7 +407705,7 @@ Psi4 is an open-source suite of ab initio quantum chemistry programs designed fo
     biotools:primaryContact "Paul Shannon" .
 
 <https://bio.tools/psicquic_view> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0128 ;
@@ -387320,7 +407721,7 @@ Psi4 is an open-source suite of ab initio quantum chemistry programs designed fo
     sc:url "http://www.ebi.ac.uk/Tools/webservices/psicquic/view/home.xhtml" .
 
 <https://bio.tools/psiko> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_2885,
@@ -387336,7 +407737,7 @@ Psi4 is an open-source suite of ab initio quantum chemistry programs designed fo
     sc:url "https://www.uea.ac.uk/computing/psiko" .
 
 <https://bio.tools/psims> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0121,
@@ -387354,7 +407755,7 @@ Prototype work for a unified API for writing PSIMS standardized XML documents, c
     sc:url "https://github.com/mobiusklein/psims" .
 
 <https://bio.tools/psindb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -387376,7 +407777,7 @@ Prototype work for a unified API for writing PSIMS standardized XML documents, c
     sc:url "http://psindb.itk.ppke.hu/" .
 
 <https://bio.tools/psinorm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2229,
         edam:topic_3170,
@@ -387394,7 +407795,7 @@ Prototype work for a unified API for writing PSIMS standardized XML documents, c
     biotools:primaryContact "Davide Risso" .
 
 <https://bio.tools/psionplus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0623,
@@ -387415,14 +407816,12 @@ Prototype work for a unified API for writing PSIMS standardized XML documents, c
 
 <https://bio.tools/psiphi> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ] ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:name "Protein structure" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1544" ;
-            sc:name "Ramachandran plot" ;
-            sc:sameAs "http://edamontology.org/data_1544" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1544" ;
+            sc:name "Ramachandran plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2814 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -387452,7 +407851,7 @@ Prototype work for a unified API for writing PSIMS standardized XML documents, c
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/psiphi.html" .
 
 <https://bio.tools/psipred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0130,
@@ -387475,7 +407874,7 @@ Prototype work for a unified API for writing PSIMS standardized XML documents, c
     biotools:primaryContact "psipred team" .
 
 <https://bio.tools/psiquic_dip> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API" ;
     sc:applicationSubCategory edam:topic_0128 ;
     sc:citation <https://doi.org/10.1093/nar/gkh086> ;
@@ -387490,7 +407889,7 @@ Prototype work for a unified API for writing PSIMS standardized XML documents, c
     sc:url "http://dip.doe-mbi.ucla.edu/dip/Main.cgi" .
 
 <https://bio.tools/psixas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0593,
         edam:topic_3047,
         edam:topic_3332 ;
@@ -387510,7 +407909,7 @@ To install and use PSIXAS, you will need Psi4 already installed on your computer
     sc:url "https://github.com/Masterluke87/psixas" .
 
 <https://bio.tools/psl-recommender> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0140,
@@ -387530,7 +407929,7 @@ To install and use PSIXAS, you will need Psi4 already installed on your computer
     sc:url "https://github.com/RJamali/PSL-Recommender" .
 
 <https://bio.tools/pslid> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_3489 ;
@@ -387543,7 +407942,7 @@ To install and use PSIXAS, you will need Psi4 already installed on your computer
     sc:url "http://murphylab.web.cmu.edu/services/PSLID/" .
 
 <https://bio.tools/pslpred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0140,
@@ -387557,10 +407956,10 @@ To install and use PSIXAS, you will need Psi4 already installed on your computer
         "Mac",
         "Windows" ;
     sc:softwareHelp <http://crdd.osdd.net/raghava//pslpred/algo.html> ;
-    sc:url "http://www.imtech.res.in/raghava/pslpred/" .
+    sc:url "http://webs.iiitd.edu.in/raghava/pslpred/" .
 
 <https://bio.tools/psmalign> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0099 ;
@@ -387574,7 +407973,7 @@ To install and use PSIXAS, you will need Psi4 already installed on your computer
     sc:url "http://homepage.cs.latrobe.edu.au/ypchen/psmalign/" .
 
 <https://bio.tools/psmc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0194 ;
     sc:citation <https://doi.org/10.1038/nature10231> ;
@@ -387587,7 +407986,7 @@ To install and use PSIXAS, you will need Psi4 already installed on your computer
     sc:url "https://github.com/lh3/psmc" .
 
 <https://bio.tools/psmix> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2885,
         edam:topic_3053,
@@ -387603,7 +408002,7 @@ To install and use PSIXAS, you will need Psi4 already installed on your computer
     sc:url "http://zhaocenter.org/software/#Population_Genetics" .
 
 <https://bio.tools/psmlm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3047,
         edam:topic_3318,
         edam:topic_3382 ;
@@ -387615,8 +408014,52 @@ To install and use PSIXAS, you will need Psi4 already installed on your computer
     sc:name "pSMLM" ;
     sc:url "https://github.com/HohlbeinLab/SMALL-LABS-pSMLM" .
 
+<https://bio.tools/psnod> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0634,
+        edam:topic_0659,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.1093/BIB/BBAC240>,
+        "pubmed:35817303" ;
+    sc:description "Predicting snoRNA-disease association using matrix completion technique" ;
+    sc:featureList edam:operation_3359 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "PSnoD" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/linDing-groups/PSnoD" .
+
+<https://bio.tools/psnpbind> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0593,
+        edam:topic_0769,
+        edam:topic_2275,
+        edam:topic_2885 ;
+    sc:citation <https://doi.org/10.1186/S13321-021-00573-5>,
+        "pmcid:PMC8886843",
+        "pubmed:35227289" ;
+    sc:description "A database of mutated binding site protein-ligand complexes constructed using a multithreaded virtual screening workflow." ;
+    sc:featureList edam:operation_0331,
+        edam:operation_3431,
+        edam:operation_3899,
+        edam:operation_3938 ;
+    sc:isAccessibleForFree true ;
+    sc:license "AGPL-3.0" ;
+    sc:name "PSnpBind" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://psnpbind.org" .
+
 <https://bio.tools/pso-locbact> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0140,
         edam:topic_0820,
         edam:topic_3474 ;
@@ -387633,7 +408076,7 @@ Several computational approaches for predicting subcellular localization have be
     sc:url "http://ncrna-pred.com/psolocbact.htm" .
 
 <https://bio.tools/psoda> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3293 ;
     sc:description "The PSODA project provides an open-source phylogenetic search tool that reads the same data file format as PAUP*" ;
@@ -387645,8 +408088,31 @@ Several computational approaches for predicting subcellular localization have be
     sc:softwareVersion "0.96" ;
     sc:url "http://dna.cs.byu.edu/psoda/" .
 
+<https://bio.tools/psoel-pseu> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_3495" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "RNA sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0659,
+        edam:topic_3170,
+        edam:topic_3300,
+        edam:topic_3474,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.3390/CIMB43030129>,
+        "pubmed:34889887" ;
+    sc:description "A Feature Fusion Predictor for RNA Pseudouridine Sites with Particle Swarm Optimizer Based Feature Selection and Ensemble Learning Approach." ;
+    sc:featureList edam:operation_3936 ;
+    sc:isAccessibleForFree true ;
+    sc:name "PsoEL-PseU" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://www.xwanglab.com/PsoEL-PseU/Server" .
+
 <https://bio.tools/psopia> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0128,
@@ -387664,7 +408130,7 @@ Several computational approaches for predicting subcellular localization have be
     sc:url "http://mizuguchilab.org/PSOPIA/" .
 
 <https://bio.tools/psortb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -387681,7 +408147,7 @@ Several computational approaches for predicting subcellular localization have be
     sc:url "http://www.psort.org/psortb/" .
 
 <https://bio.tools/psortdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0121,
@@ -387702,7 +408168,7 @@ Several computational approaches for predicting subcellular localization have be
     biotools:primaryContact "PSORTdb Support" .
 
 <https://bio.tools/psortm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0140,
         edam:topic_0820,
         edam:topic_3174,
@@ -387725,14 +408191,14 @@ PSORT.org provides links to the PSORT family of programs for subcellular localiz
 
 <https://bio.tools/pspecter> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3483" ;
-            sc:name "Spectrum" ;
-            sc:sameAs "http://edamontology.org/data_3483" ],
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3244" ;
+            sc:name "Mass spectrum" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrum" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3483" ;
+            sc:encodingFormat "http://edamontology.org/format_3244" ;
+            sc:name "Spectrum" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -387749,7 +408215,7 @@ PSORT.org provides links to the PSORT family of programs for subcellular localiz
     sc:url "https://github.com/EMSL-Computing/PSpecteR" .
 
 <https://bio.tools/psrna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0099,
@@ -387766,7 +408232,7 @@ PSORT.org provides links to the PSORT family of programs for subcellular localiz
     sc:url "http://bioserver1.physics.iisc.ernet.in/psrna/" .
 
 <https://bio.tools/psrnatarget> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0154,
@@ -387786,7 +408252,7 @@ PSORT.org provides links to the PSORT family of programs for subcellular localiz
     biotools:primaryContact "Contact Form" .
 
 <https://bio.tools/psrobot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0154,
@@ -387807,8 +408273,37 @@ PSORT.org provides links to the PSORT family of programs for subcellular localiz
     sc:url "http://omicslab.genetics.ac.cn/psRobot/" ;
     biotools:primaryContact "psRobot Support" .
 
+<https://bio.tools/psrr> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:name "Sequence" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2301" ;
+            sc:name "SMILES string" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0659,
+        edam:topic_2275,
+        edam:topic_3047,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.3389/FMOLB.2022.817294>,
+        "pmcid:PMC8979021",
+        "pubmed:35386297" ;
+    sc:description "A Web Server for Predicting the Regulation of miRNAs Expression by Small Molecules." ;
+    sc:featureList edam:operation_0463,
+        edam:operation_0478,
+        edam:operation_3792,
+        edam:operation_4009 ;
+    sc:isAccessibleForFree true ;
+    sc:name "PSRR" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://rnadrug.shinyapps.io/PSRR/" .
+
 <https://bio.tools/psrrr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0602,
@@ -387824,7 +408319,7 @@ PSORT.org provides links to the PSORT family of programs for subcellular localiz
     sc:url "http://www2.imperial.ac.uk/~gmontana/psrrr.htm" .
 
 <https://bio.tools/pss> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0130,
@@ -387840,7 +408335,7 @@ PSORT.org provides links to the PSORT family of programs for subcellular localiz
     sc:url "http://thomasgaillard.fr/pss/" .
 
 <https://bio.tools/pss-membrane> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0736,
         edam:topic_0820 ;
@@ -387853,7 +408348,7 @@ PSORT.org provides links to the PSORT family of programs for subcellular localiz
     sc:url "http://pss.sjtu.edu.cn" .
 
 <https://bio.tools/pss-sql> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0081,
@@ -387869,8 +408364,30 @@ PSORT.org provides links to the PSORT family of programs for subcellular localiz
     sc:softwareHelp <http://www.zti.aei.polsl.pl/w3/dmrozek/science/pss-sql.htm> ;
     sc:url "http://zti.polsl.pl/dmrozek/science/pss-sql.htm" .
 
+<https://bio.tools/pss_r> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0196,
+        edam:topic_0610,
+        edam:topic_0621,
+        edam:topic_3293 ;
+    sc:citation <https://doi.org/10.1002/ECE3.8649>,
+        "pmcid:PMC8888259",
+        "pubmed:35261742" ;
+    sc:description "A new approach that integrates partner availability and phylogenetic diversity to quantify biotic specialization in ecological networks." ;
+    sc:featureList edam:operation_0323,
+        edam:operation_0326,
+        edam:operation_3947 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "PSS" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/cjpardodelahoz/pss" .
+
 <https://bio.tools/pssa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0781,
@@ -387890,14 +408407,13 @@ PSORT.org provides links to the PSORT family of programs for subcellular localiz
 
 <https://bio.tools/pssalib> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2978" ;
-            sc:name "Reaction data" ;
-            sc:sameAs "http://edamontology.org/data_2978" ] ;
+            sc:additionalType "http://edamontology.org/data_2978" ;
+            sc:name "Reaction data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Pathway or network" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_2269,
@@ -387917,8 +408433,33 @@ PSORT.org provides links to the PSORT family of programs for subcellular localiz
     sc:url "http://mosaic.mpi-cbg.de/?q=downloads/stochastic_chemical_net" ;
     biotools:primaryContact "Rajesh Ramaswamy" .
 
+<https://bio.tools/pssmcool> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0082,
+        edam:topic_0154,
+        edam:topic_0166,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1093/BIOMETHODS/BPAC008>,
+        "pmcid:PMC8977839",
+        "pubmed:35388370" ;
+    sc:description "A comprehensive R package for generating evolutionary-based descriptors of protein sequences from PSSM profiles." ;
+    sc:featureList edam:operation_0267,
+        edam:operation_0303,
+        edam:operation_2489,
+        edam:operation_3891,
+        edam:operation_3937 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "PSSMCOOL" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://cran.r-project.org/web/packages/PSSMCOOL/PSSMCOOL.pdf> ;
+    sc:url "https://github.com/BioCool-Lab/PSSMCOOL" .
+
 <https://bio.tools/pssmhcpan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0128,
@@ -387937,7 +408478,7 @@ PSORT.org provides links to the PSORT family of programs for subcellular localiz
         "Geng Liu" .
 
 <https://bio.tools/pssmsearch> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0160 ;
@@ -387952,7 +408493,7 @@ PSORT.org provides links to the PSORT family of programs for subcellular localiz
     sc:url "http://slim.ucd.ie/pssmsearch/" .
 
 <https://bio.tools/pssp-mvirt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0154,
@@ -387975,7 +408516,7 @@ PSORT.org provides links to the PSORT family of programs for subcellular localiz
     sc:url "https://github.com/massyzs/PSSP-MVIRT" .
 
 <https://bio.tools/psspred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_2814,
@@ -387990,7 +408531,7 @@ PSORT.org provides links to the PSORT family of programs for subcellular localiz
     sc:url "http://zhanglab.ccmb.med.umich.edu/PSSpred/" .
 
 <https://bio.tools/pssr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3382,
         edam:topic_3474 ;
@@ -388008,7 +408549,7 @@ PSORT.org provides links to the PSORT family of programs for subcellular localiz
     biotools:primaryContact "Uri Manor" .
 
 <https://bio.tools/pssrd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0157,
@@ -388035,7 +408576,7 @@ PSORT.org provides links to the PSORT family of programs for subcellular localiz
     sc:url "http://www.pssrd.info/" .
 
 <https://bio.tools/pssrdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0157,
         edam:topic_0199,
@@ -388056,7 +408597,7 @@ PSORT.org provides links to the PSORT family of programs for subcellular localiz
     biotools:primaryContact "Hampapathalu A. Nagarajaram" .
 
 <https://bio.tools/pssrnait> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0659,
         edam:topic_0780,
@@ -388073,7 +408614,7 @@ PSORT.org provides links to the PSORT family of programs for subcellular localiz
     sc:url "https://plantgrn.noble.org/pssRNAit/" .
 
 <https://bio.tools/pssrnaminer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0102,
@@ -388094,7 +408635,7 @@ PSORT.org provides links to the PSORT family of programs for subcellular localiz
     biotools:primaryContact "pssrnaminer team" .
 
 <https://bio.tools/pstr_finder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654,
@@ -388110,7 +408651,7 @@ PSORT.org provides links to the PSORT family of programs for subcellular localiz
     sc:url "http://forensic.mc.ntu.edu.tw:9000/PSTRWeb/Default.aspx" .
 
 <https://bio.tools/pstrain> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2885,
         edam:topic_3174,
@@ -388125,8 +408666,34 @@ PSORT.org provides links to the PSORT family of programs for subcellular localiz
     sc:name "PStrain" ;
     sc:url "https://github.com/wshuai294/PStrain" .
 
+<https://bio.tools/psuc-ffsea> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0601,
+        edam:topic_0634,
+        edam:topic_3315,
+        edam:topic_3474,
+        edam:topic_3510 ;
+    sc:citation <https://doi.org/10.3389/FCELL.2022.894874>,
+        "pmcid:PMC9170990",
+        "pubmed:35686053" ;
+    sc:description "Predicting Lysine Succinylation Sites in Proteins Based on Feature Fusion and Stacking Ensemble Algorithm." ;
+    sc:featureList edam:operation_0417,
+        edam:operation_3659,
+        edam:operation_3755 ;
+    sc:isAccessibleForFree true ;
+    sc:name "pSuc-FFSEA" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://bio.cangmang.xyz/pSuc-FFSEA" .
+
 <https://bio.tools/psuc-lys> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -388143,7 +408710,7 @@ PSORT.org provides links to the PSORT family of programs for subcellular localiz
     sc:url "http://www.jci-bioinfo.cn/pSuc-Lys" .
 
 <https://bio.tools/psumo-cd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_2814,
@@ -388160,8 +408727,30 @@ PSORT.org provides links to the PSORT family of programs for subcellular localiz
     sc:url "http://www.jci-bioinfo.cn/pSumo-CD" ;
     biotools:primaryContact "Support" .
 
+<https://bio.tools/psupertime> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_2229,
+        edam:topic_3170,
+        edam:topic_3308,
+        edam:topic_3934 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC227>,
+        "pmcid:PMC9235474",
+        "pubmed:35758781" ;
+    sc:description "Supervised pseudotime analysis for time-series single-cell RNA-seq data." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_3565,
+        edam:operation_3659 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "psupertime" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://github.com/wmacnair/psupertime" .
+
 <https://bio.tools/psvs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_2814,
@@ -388177,45 +408766,25 @@ PSORT.org provides links to the PSORT family of programs for subcellular localiz
     sc:softwareHelp <http://psvs-1_5-dev.nesg.org/htdocs/psvs_help.html> ;
     sc:url "http://psvs-1_5-dev.nesg.org/" .
 
-<https://bio.tools/psychenet> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3263,
-        edam:topic_3419 ;
-    sc:citation <https://doi.org/10.7287/PEERJ.PREPRINTS.1867V2>,
-        "pmcid:PMC4958002",
-        "pubmed:27547515" ;
-    sc:description """Acceptance of the German e-mental health portal www.psychenet.de.
-
-Jeder 3. Mensch wird einmal im Leben Psychisch krank.
-
-Es ist ein Ausdruck einer psychischen Anspannung, wie Verzweiflung, nichts mehr ertragen können und auch normale Portionen zu erbrechen.
-
-[…] und auch sehr unsicher war, sobald ich vor die Tür gegangen bin, mich nicht mehr wohl gefühlt habe""" ;
-    sc:featureList edam:operation_3435 ;
-    sc:name "psychenet" ;
-    sc:url "http://www.psychenet.de" .
-
 <https://bio.tools/psychoprot> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3154" ;
-            sc:name "Protein alignment" ;
-            sc:sameAs "http://edamontology.org/data_3154" ],
+            sc:additionalType "http://edamontology.org/data_3154" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Protein alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Sequence alignment" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0950" ;
-            sc:name "Mathematical model" ;
-            sc:sameAs "http://edamontology.org/data_0950" ],
+            sc:additionalType "http://edamontology.org/data_0950" ;
+            sc:name "Mathematical model" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2087" ;
-            sc:name "Molecular property" ;
-            sc:sameAs "http://edamontology.org/data_2087" ],
+            sc:additionalType "http://edamontology.org/data_2087" ;
+            sc:name "Molecular property" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -388235,7 +408804,7 @@ Es ist ein Ausdruck einer psychischen Anspannung, wie Verzweiflung, nichts mehr
     sc:url "http://psychoprot.epfl.ch" .
 
 <https://bio.tools/psychrnn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3304,
         edam:topic_3474,
         edam:topic_3500 ;
@@ -388248,7 +408817,7 @@ Es ist ein Ausdruck einer psychischen Anspannung, wie Verzweiflung, nichts mehr
     sc:url "https://github.com/murraylab/PsychRNN" .
 
 <https://bio.tools/psychtestr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Suite" ;
     sc:applicationSubCategory edam:topic_0769,
@@ -388262,7 +408831,7 @@ Es ist ein Ausdruck einer psychischen Anspannung, wie Verzweiflung, nichts mehr
     biotools:primaryContact <https://orcid.org/0000-0002-9851-9462> .
 
 <https://bio.tools/psygenet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0634,
@@ -388278,7 +408847,7 @@ Es ist ein Ausdruck einer psychischen Anspannung, wie Verzweiflung, nichts mehr
     sc:url "http://www.psygenet.org" .
 
 <https://bio.tools/psygenet2r> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3071,
@@ -388297,7 +408866,7 @@ Es ist ein Ausdruck einer psychischen Anspannung, wie Verzweiflung, nichts mehr
     biotools:primaryContact "Alba Gutierrez-Sacristan" .
 
 <https://bio.tools/ptarget> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0154,
@@ -388316,7 +408885,7 @@ Es ist ein Ausdruck einer psychischen Anspannung, wie Verzweiflung, nichts mehr
     sc:url "http://bioinformatics.albany.edu/~ptarget" .
 
 <https://bio.tools/ptee> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0625,
@@ -388340,7 +408909,7 @@ Es ist ein Ausdruck einer psychischen Anspannung, wie Verzweiflung, nichts mehr
         "Diana Le Duc" .
 
 <https://bio.tools/pteros> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0176,
@@ -388359,7 +408928,7 @@ Es ist ein Ausdruck einer psychischen Anspannung, wie Verzweiflung, nichts mehr
     biotools:primaryContact "Semen O. Yesylevskyy" .
 
 <https://bio.tools/ptest> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0634,
@@ -388375,7 +408944,7 @@ Es ist ein Ausdruck einer psychischen Anspannung, wie Verzweiflung, nichts mehr
     sc:url "http://www.jurgott.org/linkage/PTest.html" .
 
 <https://bio.tools/ptgl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0166,
@@ -388400,7 +408969,7 @@ Secondary structure-based protein topologies are represented uniquely as undirec
         "Tim Schaefer" .
 
 <https://bio.tools/pthgrn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -388426,7 +408995,7 @@ Secondary structure-based protein topologies are represented uniquely as undirec
         "Daogang Guan" .
 
 <https://bio.tools/ptm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0166,
         edam:topic_0601,
@@ -388446,7 +409015,7 @@ Secondary structure-based protein topologies are represented uniquely as undirec
     biotools:primaryContact <https://orcid.org/0000-0002-3497-9945> .
 
 <https://bio.tools/ptmclust> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0154,
@@ -388464,8 +409033,50 @@ Secondary structure-based protein topologies are represented uniquely as undirec
     sc:url "http://genes.toronto.edu/PTMClust/" ;
     biotools:primaryContact "Prof. Brendan Frey" .
 
+<https://bio.tools/ptmcode> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0091 ;
+    sc:citation <https://doi.org/10.1093/nar/gks1230> ;
+    sc:description "PTMCode is a resource of known and predicted functional associations between protein post-translational modifications (PTMs) within and between interacting proteins. It currently contains 316,546 modified sites from 69 different PTM types which are also propagated through ortholgs between 19 different eukaryotic species. A total of 1.6 million sites and 17 million functional associations more than 100,000 proteins can currently be explored." ;
+    sc:isAccessibleForFree true ;
+    sc:license "CC-BY-NC-SA-3.0" ;
+    sc:name "PTMCode" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://ptmcode.embl.de/help.cgi> ;
+    sc:url "https://ptmcode.embl.de/" ;
+    biotools:primaryContact <https://orcid.org/0000-0003-4099-9421> .
+
+<https://bio.tools/ptmdyna> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein structure" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0130,
+        edam:topic_0176,
+        edam:topic_0593,
+        edam:topic_0601,
+        edam:topic_2229 ;
+    sc:citation <https://doi.org/10.1093/BIB/BBAB424>,
+        "pubmed:34643234" ;
+    sc:description "Predict the impact of post-translation modification on protein dynamics based on molecular dynamic simulation" ;
+    sc:featureList edam:operation_0244,
+        edam:operation_0417,
+        edam:operation_2476,
+        edam:operation_3755 ;
+    sc:isAccessibleForFree true ;
+    sc:name "PTMdyna" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://ccbportal.com/PTMdyna" .
+
 <https://bio.tools/ptmpred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -388482,14 +409093,14 @@ Secondary structure-based protein topologies are represented uniquely as undirec
 
 <https://bio.tools/ptmprophet> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ] ;
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_3655" ;
+            sc:name "Peptide identification" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_3655" ;
+            sc:name "Peptide identification" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121 ;
     sc:citation <https://doi.org/10.1002/prca.201400164>,
@@ -388506,7 +409117,7 @@ Secondary structure-based protein topologies are represented uniquely as undirec
     sc:url "http://tools.proteomecenter.org/wiki/index.php?title=Software:TPP" .
 
 <https://bio.tools/ptmsnp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0601,
         edam:topic_0634,
@@ -388528,7 +409139,7 @@ Protein post-translational modifications (PTMs) is one of the most important reg
     sc:url "http://ptmsnp.renlab.org" .
 
 <https://bio.tools/ptmtreesearch> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_3520 ;
@@ -388545,7 +409156,7 @@ Protein post-translational modifications (PTMs) is one of the most important reg
     biotools:primaryContact "Support" .
 
 <https://bio.tools/ptmviz> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -388565,8 +409176,30 @@ Protein post-translational modifications (PTMs) is one of the most important reg
     sc:url "https://github.com/ByrumLab/PTMViz" ;
     biotools:primaryContact <https://orcid.org/0000-0002-1783-3610> .
 
+<https://bio.tools/ptncrnadb> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0602,
+        edam:topic_0659,
+        edam:topic_0780,
+        edam:topic_3170,
+        edam:topic_3407 ;
+    sc:citation <https://doi.org/10.1007/S13205-022-03174-7>,
+        "pmcid:PMC8986922",
+        "pubmed:35462956" ;
+    sc:description "Plant transfer RNA-derived non-coding RNAs (tncRNAs) database." ;
+    sc:featureList edam:operation_0464,
+        edam:operation_2421,
+        edam:operation_3792 ;
+    sc:isAccessibleForFree true ;
+    sc:name "PtncRNAdb" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://nipgr.ac.in/PtncRNAdb" .
+
 <https://bio.tools/ptnet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0203,
@@ -388589,7 +409222,7 @@ Protein post-translational modifications (PTMs) is one of the most important reg
     sc:url "http://github.com/CompbioLabUCF/PTNet" .
 
 <https://bio.tools/ptools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:description "Parallelised versions of various tools." ;
@@ -388597,7 +409230,7 @@ Protein post-translational modifications (PTMs) is one of the most important reg
     sc:url "https://bioweb.pasteur.fr/packages/pack@ptools@0.99d" .
 
 <https://bio.tools/ptrcombiner> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -388615,7 +409248,7 @@ Protein post-translational modifications (PTMs) is one of the most important reg
     sc:url "http://disi.unitn.it/~passerini/software/PTRcombiner/" .
 
 <https://bio.tools/ptrstalker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1186/1471-2105-13-S3-S8> ;
@@ -388630,7 +409263,7 @@ Protein post-translational modifications (PTMs) is one of the most important reg
     sc:url "http://bioalgo.iit.cnr.it/index.php?pg=ptrs" .
 
 <https://bio.tools/pts> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0196,
@@ -388645,18 +409278,18 @@ Protein post-translational modifications (PTMs) is one of the most important reg
 
 <https://bio.tools/ptv> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0951" ;
-            sc:name "Statistical estimate score" ;
-            sc:sameAs "http://edamontology.org/data_0951" ],
+            sc:additionalType "http://edamontology.org/data_0951" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Statistical estimate score" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_3508" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0605,
         edam:topic_0781,
@@ -388679,7 +409312,7 @@ Protein post-translational modifications (PTMs) is one of the most important reg
     sc:url "https://gitlab.pasteur.fr/vlegrand/ptv" .
 
 <https://bio.tools/pub2tools2020__genodive> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3056 ;
@@ -388697,7 +409330,7 @@ Genodive version 3.0 is a user-friendly program for the analysis of population g
     sc:url "http://www.patrickmeirmans.com/software/Home.html" .
 
 <https://bio.tools/pub2tools2020__genodraw> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_2815,
@@ -388711,7 +409344,7 @@ The integration of genetic information in current clinical routine has raised a
     sc:url "https://genodraw.com/authentication/login" .
 
 <https://bio.tools/pub2tools2020__gomcl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0602,
@@ -388731,7 +409364,7 @@ GOMCL is a tool to cluster and extract summarized associations of Gene Ontology
     sc:url "http://www.lsugenomics.org" .
 
 <https://bio.tools/pub2tools2020__gtdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0602,
@@ -388753,7 +409386,7 @@ Glycosyltransferases (GTs), a large class of carbohydrate-active enzymes, adds g
     sc:url "https://www.biosino.org/gtdb/" .
 
 <https://bio.tools/pub2tools2020__herbipad> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0749,
@@ -388769,7 +409402,7 @@ Glycosyltransferases (GTs), a large class of carbohydrate-active enzymes, adds g
     sc:url "http://agroda.gzu.edu.cn:9999/ccb/database/HerbiPAD/" .
 
 <https://bio.tools/pub2tools2020__hopper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3170,
@@ -388793,7 +409426,7 @@ Hopper is a mathematically motivated sketching algorithm for single-cell data, w
     sc:url "http://hopper.csail.mit.edu" .
 
 <https://bio.tools/pub2tools2020__hw_test> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3315,
@@ -388810,7 +409443,7 @@ HW_TEST, a software developed for Microsoft Windows that can be managed without
     sc:url "https://github.com/Lemes-RenanB/HardyWeinbergTesting" .
 
 <https://bio.tools/pub2tools2020__lfsuf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_3399,
@@ -388827,7 +409460,7 @@ Understanding the ageing process is a very challenging problem for biologists. T
     sc:url "http://github.com/pablonsilva/FSforUncertainFeatureSpaces" .
 
 <https://bio.tools/pub2tools2020__metasubtract> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3053,
@@ -388846,7 +409479,7 @@ Subtracting Summary Statistics of One or more Cohorts from Meta-GWAS Results."""
     sc:url "https://cran.r-project.org/web/packages/MetaSubtract" .
 
 <https://bio.tools/pub2tools2020__metatropismdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_2640,
@@ -388865,7 +409498,7 @@ The organotropism is the propensity of metastatic cancer cells to colonize prefe
     sc:url "http://www.introni.it/Metastasis/metastasis.html" .
 
 <https://bio.tools/pub2tools2020__methylnet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0654,
@@ -388887,7 +409520,7 @@ MethylNet is a command line tool and python library that provides classes to han
     sc:url "https://github.com/Christensen-Lab-Dartmouth/MethylNet" .
 
 <https://bio.tools/pub2tools2020__ncvardb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0659,
@@ -388910,7 +409543,7 @@ git clone https://github.com/Gardner-BinfLab/ncVarDB.""" ;
     sc:url "https://github.com/Gardner-BinfLab/ncVarDB" .
 
 <https://bio.tools/pub2tools2020__ntjoin> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
@@ -388930,7 +409563,7 @@ ntJoin takes a target assembly and one or more 'reference' assembly as input, an
     sc:url "https://github.com/bcgsc/ntjoin" .
 
 <https://bio.tools/pub2tools2020__nubeam> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0659,
@@ -388951,7 +409584,7 @@ Nubeam is a reference-free approach to analyze short sequencing reads. It repres
     sc:url "https://github.com/daihang16/Nubeam" .
 
 <https://bio.tools/pub2tools2020__omicwas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0634,
@@ -388969,7 +409602,7 @@ Cell-Type-Specific Disease Association Testing in Bulk Omics Experiments.""" ;
     sc:url "https://github.com/fumi-github/omicwas" .
 
 <https://bio.tools/pub2tools2020__osgbm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3308,
@@ -388987,7 +409620,7 @@ Glioblastoma (GBM) is the most common malignant tumor of the central nervous sys
     sc:url "http://bioinfo.henu.edu.cn/GBM/GBMList.jsp" .
 
 <https://bio.tools/pub2tools2020__seeds> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2259,
         edam:topic_3315 ;
@@ -389005,7 +409638,7 @@ Algorithms to calculate the hidden inputs of systems of differential equations.
     sc:url "https://cran.r-project.org/package=seeds" .
 
 <https://bio.tools/pub2tools2021__covid-one-humoral-immune> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -389025,7 +409658,7 @@ Algorithms to calculate the hidden inputs of systems of differential equations.
     sc:url "http://www.COVID-ONE.cn" .
 
 <https://bio.tools/pub2tools2021__cytomorph> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0621,
@@ -389049,7 +409682,7 @@ Cytomorph can also work as an in silico tester for other biological hypotheses t
     sc:url "https://github.com/AdrianA-T/cytomorph" .
 
 <https://bio.tools/pub2tools2021__fmodb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0209,
@@ -389068,7 +409701,7 @@ FMODB: The database of quantum mechanical data based on the FMO method.""" ;
     sc:url "https://drugdesign.riken.jp/FMODB/" .
 
 <https://bio.tools/pubarray> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3518 ;
     sc:description "PubArray is a desktop application that allows you to turn the analyzed results of your microarray experiment into a web application which is accessible via your browser." ;
@@ -389081,7 +409714,7 @@ FMODB: The database of quantum mechanical data based on the FMO method.""" ;
     sc:url "http://churchill.jax.org/software/pubarray.shtml" .
 
 <https://bio.tools/pubcasefinder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0218,
         edam:topic_0625,
@@ -389106,7 +409739,7 @@ Toyofumi Fujiwara, Yasunori Yamamoto, Jin-Dong Kim, Orion Buske, and Toshihisa T
     sc:url "https://pubcasefinder.dbcls.jp/" .
 
 <https://bio.tools/pubchem> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0154,
@@ -389128,7 +409761,7 @@ Toyofumi Fujiwara, Yasunori Yamamoto, Jin-Dong Kim, Orion Buske, and Toshihisa T
     biotools:primaryContact "PubChem Support" .
 
 <https://bio.tools/pubchem_bioassay_service> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154 ;
     sc:citation "pubmed:19498078" ;
@@ -389143,7 +409776,7 @@ Toyofumi Fujiwara, Yasunori Yamamoto, Jin-Dong Kim, Orion Buske, and Toshihisa T
     biotools:primaryContact "PubChem Contact Page" .
 
 <https://bio.tools/pubchem_pte> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2258,
         edam:topic_3314,
@@ -389163,7 +409796,7 @@ Toyofumi Fujiwara, Yasunori Yamamoto, Jin-Dong Kim, Orion Buske, and Toshihisa T
     sc:url "https://periodic.lanl.gov/index.shtml" .
 
 <https://bio.tools/pubcrawler> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0157,
@@ -389186,7 +409819,7 @@ Toyofumi Fujiwara, Yasunori Yamamoto, Jin-Dong Kim, Orion Buske, and Toshihisa T
     biotools:primaryContact "PubCrawler Support" .
 
 <https://bio.tools/pubgene> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -389203,28 +409836,8 @@ Toyofumi Fujiwara, Yasunori Yamamoto, Jin-Dong Kim, Orion Buske, and Toshihisa T
     sc:url "http://www.pubgene.org/" ;
     biotools:primaryContact "Coremine Support" .
 
-<https://bio.tools/public_health_commute> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3305,
-        edam:topic_3418,
-        edam:topic_3419 ;
-    sc:citation <https://doi.org/10.1186/S12909-019-1734-4>,
-        "pmcid:PMC6679425",
-        "pubmed:31376832" ;
-    sc:description "> VERY_LOW CONFIDENCE! | Development of an online public health curriculum for medical students | The Public Health Commute is an online public health curriculum for medical students. Designed for Columbia College of Physicians and Surgeons but publicly available to everyone interested" ;
-    sc:name "public health commute" ;
-    sc:url "http://www.publichealthcommute.com" .
-
-<https://bio.tools/publication-search> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3403 ;
-    sc:citation <https://doi.org/10.1016/J.AFJEM.2019.01.015>,
-        "pmcid:PMC6742597",
-        "pubmed:31528534" ;
-    sc:description "> VERY_LOW CONFIDENCE! | > CORRECT NAME OF TOOL COULD ALSO BE 'RoMEO', 'Citescore', 'emergency', 'Introduction:Finding' | A cross-sectional description of open access publication costs, policies and impact in emergency medicine and critical care journals | Emergency Medicine Cape Town" ;
-    sc:name "publication-search" ;
-    sc:url "http://www.emct.info/publication-search.html" .
-
 <https://bio.tools/publicity> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3383,
         edam:topic_3474 ;
@@ -389237,27 +409850,8 @@ Toyofumi Fujiwara, Yasunori Yamamoto, Jin-Dong Kim, Orion Buske, and Toshihisa T
     sc:url "http://github.com/hms-idac/PuBliCiTy" ;
     biotools:primaryContact <https://orcid.org/0000-0003-2649-1509> .
 
-<https://bio.tools/publicly-available> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0621,
-        edam:topic_3302,
-        edam:topic_3305,
-        edam:topic_3315,
-        edam:topic_3324 ;
-    sc:citation <https://doi.org/10.1101/2019.12.17.19013490> ;
-    sc:description """Stochastic challenges to interrupting helminth transmission.
-
-Predicting the effect of different programmes designed to control both the morbidity induced by helminth infections and parasite transmission is greatly facilitated by the use of mathematical models of transmission and control impact. In such models, it is essential to account for as many sources of uncertainty natural, or otherwise to ensure robustness in prediction and to accurately depict variation around an expected outcome. In this paper, we investigate how well the standard deterministic models match the predictions made using individual-based stochastic simulations. We also explore how well concepts which derive from deterministic models, such as ‘breakpoints’ in transmission, apply in the stochastic world.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'STH', 'helminth', 'transmission', 'inter-village'""" ;
-    sc:featureList edam:operation_2426,
-        edam:operation_3891 ;
-    sc:name "publicly-available" ;
-    sc:url "https://doi.org/10.1101/2019.12.17.19013490" .
-
 <https://bio.tools/pubmed> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_3068,
@@ -389280,7 +409874,7 @@ Predicting the effect of different programmes designed to control both the morbi
     sc:url "http://www.ncbi.nlm.nih.gov/pubmed" .
 
 <https://bio.tools/pubmed2ensembl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3071,
         edam:topic_3473 ;
@@ -389295,7 +409889,7 @@ Predicting the effect of different programmes designed to control both the morbi
     sc:url "http://www.pubmed2ensembl.org/" .
 
 <https://bio.tools/pubmed_central> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0632,
@@ -389316,28 +409910,48 @@ Predicting the effect of different programmes designed to control both the morbi
     biotools:primaryContact "NIHMS Help Desk",
         "PMC Help Desk" .
 
+<https://bio.tools/pubmedkb> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0218,
+        edam:topic_0769,
+        edam:topic_3303 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAC310>,
+        "pmcid:PMC9252824",
+        "pubmed:35536289" ;
+    sc:description "An interactive web server for exploring biomedical entity relations in the biomedical literature." ;
+    sc:featureList edam:operation_0305,
+        edam:operation_2422,
+        edam:operation_3280,
+        edam:operation_3625,
+        edam:operation_3778 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "pubmedKB" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://www.pubmedkb.cc" .
+
 <https://bio.tools/pubmeth> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0976" ;
-            sc:name "Identifier (by type of data)" ;
-            sc:sameAs "http://edamontology.org/data_0976" ],
+            sc:additionalType "http://edamontology.org/data_1026" ;
+            sc:name "Gene symbol" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1026" ;
-            sc:name "Gene symbol" ;
-            sc:sameAs "http://edamontology.org/data_1026" ],
+            sc:additionalType "http://edamontology.org/data_0976" ;
+            sc:name "Identifier (by type of data)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1026" ;
-            sc:name "Gene symbol" ;
-            sc:sameAs "http://edamontology.org/data_1026" ] ;
+            sc:additionalType "http://edamontology.org/data_1026" ;
+            sc:name "Gene symbol" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0916" ;
-            sc:name "Gene report" ;
-            sc:sameAs "http://edamontology.org/data_0916" ],
+            sc:additionalType "http://edamontology.org/data_0916" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Gene report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0916" ;
-            sc:name "Gene report" ;
-            sc:sameAs "http://edamontology.org/data_0916" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0916" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Gene report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_2640 ;
@@ -389353,7 +409967,7 @@ Predicting the effect of different programmes designed to control both the morbi
     biotools:primaryContact "Pubmeth Support" .
 
 <https://bio.tools/pubrecheck> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0218,
         edam:topic_3303,
@@ -389372,7 +409986,7 @@ Data-driven research in biomedical science requires structured, computable data.
     sc:url "http://www.ncbi.nlm.nih.gov/research/pubrecheck" .
 
 <https://bio.tools/pubrunner> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3068 ;
@@ -389385,7 +409999,7 @@ Data-driven research in biomedical science requires structured, computable data.
     sc:url "http://www.pubrunner.org/" .
 
 <https://bio.tools/pubserver> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -389410,7 +410024,7 @@ Data-driven research in biomedical science requires structured, computable data.
         "Lukasz Jaroszewski" .
 
 <https://bio.tools/pubtator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0218,
@@ -389431,7 +410045,7 @@ Data-driven research in biomedical science requires structured, computable data.
     biotools:primaryContact "Zhiyong Lu" .
 
 <https://bio.tools/pudge> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -389453,7 +410067,7 @@ Data-driven research in biomedical science requires structured, computable data.
     biotools:primaryContact "Support" .
 
 <https://bio.tools/puffaligner> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3174,
         edam:topic_3673 ;
@@ -389468,7 +410082,7 @@ Data-driven research in biomedical science requires structured, computable data.
     sc:url "https://github.com/COMBINE-lab/pufferfish/tree/cigar-strings" .
 
 <https://bio.tools/pug> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_2258 ;
     sc:description "Interface to PubChem." ;
@@ -389481,8 +410095,30 @@ Data-driven research in biomedical science requires structured, computable data.
     sc:softwareVersion "1" ;
     sc:url "http://pubchem.ncbi.nlm.nih.gov/pug_soap/pug_soap_help.html" .
 
+<https://bio.tools/pullseq> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Sequence" ] ;
+    bsc:output [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0080 ;
+    sc:description "Software to extract sequence from a fasta or fastq. Also filter sequences by a minimum length or maximum length." ;
+    sc:featureList edam:operation_2422 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "Pullseq" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/bcthomas/pullseq" .
+
 <https://bio.tools/pulse> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0099,
@@ -389501,7 +410137,7 @@ Data-driven research in biomedical science requires structured, computable data.
     sc:url "http://www.kimlab.org/software/pulse" .
 
 <https://bio.tools/pulse-phage> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0154,
@@ -389519,7 +410155,7 @@ Data-driven research in biomedical science requires structured, computable data.
         "Steven Shave" .
 
 <https://bio.tools/pulseq-cest> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0593,
         edam:topic_0749,
@@ -389536,7 +410172,7 @@ Data-driven research in biomedical science requires structured, computable data.
     biotools:primaryContact <https://orcid.org/0000-0002-7286-1454> .
 
 <https://bio.tools/pulser> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0602,
@@ -389554,7 +410190,7 @@ Data-driven research in biomedical science requires structured, computable data.
         "C. Dieterich" .
 
 <https://bio.tools/pulsetd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3170,
         edam:topic_3512 ;
@@ -389576,14 +410212,14 @@ Title: Identification of Transcriptional Dynamics using Pulse Models via 4su-Seq
 
 <https://bio.tools/puma> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Gene expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ] ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_1638" ;
+            sc:name "Gene expression data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -389605,7 +410241,7 @@ Title: Identification of Transcriptional Dynamics using Pulse Models via 4su-Seq
     biotools:primaryContact "Xuejun Liu" .
 
 <https://bio.tools/puma-Papillomavirus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0781,
         edam:topic_3174 ;
@@ -389617,7 +410253,7 @@ Title: Identification of Transcriptional Dynamics using Pulse Models via 4su-Seq
     sc:url "https://www.imicrobe.us/#/apps/puma" .
 
 <https://bio.tools/puma-pathway> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0602,
         edam:topic_3172,
@@ -389640,10 +410276,10 @@ Untargeted metabolomics comprehensively characterizes small molecules and elucid
 
 <https://bio.tools/pumas> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0951" ;
-            sc:name "Statistical estimate score" ;
-            sc:sameAs "http://edamontology.org/data_0951" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0951" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Statistical estimate score" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2885,
@@ -389666,7 +410302,7 @@ Untargeted metabolomics comprehensively characterizes small molecules and elucid
     sc:url "https://github.com/qlu-lab/PUMAS" .
 
 <https://bio.tools/punctaspecks> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_2229,
         edam:topic_3047,
@@ -389684,7 +410320,7 @@ Recent advances in imaging technology and fluorescent probes have made it possib
     sc:url "http://faculty.cas.usf.edu/gullah/Software.html" .
 
 <https://bio.tools/pupasuite> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0625,
@@ -389703,7 +410339,7 @@ Recent advances in imaging technology and fluorescent probes have made it possib
     sc:url "http://pupasuite.bioinfo.cipf.es" .
 
 <https://bio.tools/pupasview> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0634,
@@ -389720,7 +410356,7 @@ Recent advances in imaging technology and fluorescent probes have made it possib
     sc:url "http://pupasuite.bioinfo.cipf.es/" .
 
 <https://bio.tools/pupilext> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3077,
         edam:topic_3304,
@@ -389742,8 +410378,26 @@ Recent advances in imaging technology and fluorescent probes have made it possib
     sc:softwareHelp <https://github.com/openPupil/Open-PupilEXT> ;
     sc:url "https://github.com/openPupil/Open-PupilEXT" .
 
+<https://bio.tools/pupl> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0108,
+        edam:topic_0769 ;
+    sc:citation <https://doi.org/10.3758/S13428-021-01717-Z>,
+        "pubmed:34874538" ;
+    sc:description "An open-source tool for processing pupillometry data." ;
+    sc:featureList edam:operation_3802 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Other" ;
+    sc:name "PuPl" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://github.com/kinleyid/PuPl/blob/master/manual.pdf> ;
+    sc:url "http://github.com/kinleyid/pupl" .
+
 <https://bio.tools/purbayes> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_2640,
@@ -389759,7 +410413,7 @@ Recent advances in imaging technology and fluorescent probes have made it possib
     sc:url "http://cran.r-project.org/package=PurBayes" .
 
 <https://bio.tools/pure> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_3068,
         edam:topic_3070 ;
@@ -389776,7 +410430,7 @@ Recent advances in imaging technology and fluorescent probes have made it possib
     sc:url "http://www.bic.kyoto-u.ac.jp/pathway/PURE/" .
 
 <https://bio.tools/purecn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3168 ;
@@ -389797,7 +410451,7 @@ Recent advances in imaging technology and fluorescent probes have made it possib
     biotools:primaryContact <http://orcid.org/0000-0002-4759-8332> .
 
 <https://bio.tools/purge_dups> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0196 ;
     sc:citation <https://doi.org/10.1101/729962> ;
     sc:description "Identifying and removing haplotypic duplication in primary genome assemblies | haplotypic duplication identification tool | scripts/pd_config.py: script to generate a configuration file used by run_purge_dups.py | purge haplotigs and overlaps in an assembly based on read depth | Given a primary assembly pri_asm and an alternative assembly hap_asm (optional, if you have one), follow the steps shown below to build your own purge_dups pipeline, steps with same number can be run simultaneously. Among all the steps, although step 4 is optional, we highly recommend our users to do so, because assemblers may produce overrepresented seqeuences. In such a case, The final step 4 can be applied to remove those seqeuences" ;
@@ -389809,7 +410463,7 @@ Recent advances in imaging technology and fluorescent probes have made it possib
     sc:url "https://github.com/dfguan/purge_dups" .
 
 <https://bio.tools/purgehaplotigs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
@@ -389829,7 +410483,7 @@ Recent advances in imaging technology and fluorescent probes have made it possib
     biotools:primaryContact <https://orcid.org/0000-0003-1488-5148> .
 
 <https://bio.tools/purger> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0605,
         edam:topic_3056,
@@ -389848,7 +410502,7 @@ Recent advances in imaging technology and fluorescent probes have made it possib
     sc:url "https://gitlab.com/elcortegano/purgeR" .
 
 <https://bio.tools/putracer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_2814,
@@ -389865,7 +410519,7 @@ Recent advances in imaging technology and fluorescent probes have made it possib
     sc:url "http://bioinf.modares.ac.ir/software/PUTracer/" .
 
 <https://bio.tools/pvaas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0099,
@@ -389881,7 +410535,7 @@ Recent advances in imaging technology and fluorescent probes have made it possib
     biotools:primaryContact "Liguo Wang" .
 
 <https://bio.tools/pvac> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0199 ;
@@ -389901,7 +410555,7 @@ Recent advances in imaging technology and fluorescent probes have made it possib
         "Pierre R. Bushel" .
 
 <https://bio.tools/pvactools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
         edam:topic_0199,
@@ -389925,18 +410579,18 @@ A browser-based user interface that assists users in launching, managing, review
 
 <https://bio.tools/pvca> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3110" ;
-            sc:name "Raw microarray data" ;
-            sc:sameAs "http://edamontology.org/data_3110" ] ;
+            sc:additionalType "http://edamontology.org/data_3110" ;
+            sc:encodingFormat "http://edamontology.org/format_1637" ;
+            sc:name "Raw microarray data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3111" ;
-            sc:name "Processed microarray data" ;
-            sc:sameAs "http://edamontology.org/data_3111" ],
+            sc:additionalType "http://edamontology.org/data_3111" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Processed microarray data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3518,
@@ -389956,22 +410610,22 @@ A browser-based user interface that assists users in launching, managing, review
 
 <https://bio.tools/pview> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ],
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3654" ;
+            sc:name "Mass spectrometry spectra" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ],
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence record" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_3655" ;
+            sc:name "Peptide identification" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Expression data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0121,
@@ -390000,7 +410654,7 @@ A browser-based user interface that assists users in launching, managing, review
     sc:url "http://compbio.cs.princeton.edu/pview/" .
 
 <https://bio.tools/pviz> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0078,
@@ -390020,7 +410674,7 @@ A browser-based user interface that assists users in launching, managing, review
     biotools:primaryContact "Renan Sauteraud" .
 
 <https://bio.tools/pviz-visual> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_3510 ;
@@ -390038,7 +410692,7 @@ A browser-based user interface that assists users in launching, managing, review
         "Kiran Mukhyala" .
 
 <https://bio.tools/pvnet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3382 ;
     sc:citation <https://doi.org/10.1109/TPAMI.2020.3047388>,
         "pubmed:33360984" ;
@@ -390051,7 +410705,7 @@ We add a jupyter notebook visualization.ipynb for the keypoint detection pipelin
     sc:url "https://github.com/zju3dv/pvnet" .
 
 <https://bio.tools/pvp01> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0082,
         edam:topic_0121,
@@ -390072,7 +410726,7 @@ Five Species of malarial parasite (Plasmodium) are know to affect Humans, i.e.,
     sc:url "http://www.scfbio-iitd.res.in/PvP01" .
 
 <https://bio.tools/pvpred-scm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0154,
         edam:topic_3306,
@@ -390091,7 +410745,7 @@ In this work, we developed a novel PVP predictor named PVPred-SCM which is an ef
     sc:url "http://camt.pythonanywhere.com/PVPred-SCM" .
 
 <https://bio.tools/pvs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -390114,7 +410768,7 @@ In this work, we developed a novel PVP predictor named PVPred-SCM which is an ef
     biotools:primaryContact "PVS Support" .
 
 <https://bio.tools/pwas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3295,
         edam:topic_3337,
@@ -390133,18 +410787,18 @@ In this work, we developed a novel PVP predictor named PVPred-SCM which is an ef
 
 <https://bio.tools/pwmenrich> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1383" ;
-            sc:name "Sequence alignment (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1383" ] ;
+            sc:additionalType "http://edamontology.org/data_1383" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment (nucleic acid)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1772" ;
-            sc:name "Score" ;
-            sc:sameAs "http://edamontology.org/data_1772" ],
+            sc:additionalType "http://edamontology.org/data_1772" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Score" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0097,
@@ -390165,7 +410819,7 @@ In this work, we developed a novel PVP predictor named PVPred-SCM which is an ef
     biotools:primaryContact "Robert Stojnic" .
 
 <https://bio.tools/pwmscan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0749,
@@ -390183,7 +410837,7 @@ In this work, we developed a novel PVP predictor named PVPred-SCM which is an ef
         "Philipp Bucher" .
 
 <https://bio.tools/pwomics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0622 ;
@@ -390202,7 +410856,7 @@ In this work, we developed a novel PVP predictor named PVPred-SCM which is an ef
     biotools:primaryContact "Astrid Wachter" .
 
 <https://bio.tools/pwrEWAS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3295,
@@ -390223,7 +410877,7 @@ In this work, we developed a novel PVP predictor named PVPred-SCM which is an ef
     biotools:primaryContact "Stefan Graw" .
 
 <https://bio.tools/pwst> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
         edam:topic_0154,
@@ -390239,7 +410893,7 @@ In this work, we developed a novel PVP predictor named PVPred-SCM which is an ef
     sc:url "https://ulbbf.shinyapps.io/pwst/" .
 
 <https://bio.tools/pwstablenet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102 ;
     sc:citation <https://doi.org/10.1109/TIP.2019.2963380>,
         "pubmed:31944957" ;
@@ -390251,7 +410905,7 @@ As the videos captured by hand-held cameras are often perturbed by high-frequenc
     sc:url "https://github.com/mindazhao/PWStableNet" .
 
 <https://bio.tools/pximage> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_2269,
@@ -390274,7 +410928,7 @@ As the videos captured by hand-held cameras are often perturbed by high-frequenc
     sc:url "http://www.ccp4.ac.uk/jwc/Xhtml/PXImage/PXImage.html" .
 
 <https://bio.tools/pxsim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_2814,
@@ -390295,8 +410949,26 @@ As the videos captured by hand-held cameras are often perturbed by high-frequenc
     sc:softwareVersion "1" ;
     sc:url "http://www.ccp4.ac.uk/jwc/Xhtml/PXSim/PXSim.html" .
 
+<https://bio.tools/py-mcmd> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0176,
+        edam:topic_0769 ;
+    sc:citation <https://doi.org/10.1021/ACS.JCTC.1C00911>,
+        "pubmed:35621307" ;
+    sc:description "Python Software for Performing Hybrid Monte Carlo/Molecular Dynamics Simulations with GOMC and NAMD." ;
+    sc:featureList edam:operation_0244,
+        edam:operation_2476 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "py-MCMD" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/GOMC-WSU/py-MCMD" .
+
 <https://bio.tools/py2DIC> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3382 ;
     sc:citation <https://doi.org/10.3390/S19183832>,
         "pmcid:PMC6766978",
@@ -390309,7 +410981,7 @@ As the videos captured by hand-held cameras are often perturbed by high-frequenc
     sc:url "http://github.com/Geod-Geom/py2DIC/" .
 
 <https://bio.tools/pyCancerSig> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_2885,
         edam:topic_3175,
@@ -390332,14 +411004,14 @@ Install the dependencies, then download and install pyCancerSig""" ;
 
 <https://bio.tools/pyDockEneRes> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2877" ;
-            sc:name "Protein complex" ;
-            sc:sameAs "http://edamontology.org/data_2877" ] ;
+            sc:additionalType "http://edamontology.org/data_2877" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein complex" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3981" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0199,
@@ -390362,7 +411034,7 @@ Install the dependencies, then download and install pyCancerSig""" ;
     sc:url "https://life.bsc.es/pid/pydockeneres" .
 
 <https://bio.tools/pyGAPS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3361 ;
     sc:citation <https://doi.org/10.26434/CHEMRXIV.7970402.V2> ;
     sc:description """pyGAPS is a Python-Based Framework for Adsorption Isotherm Processing and Material Characterisation.
@@ -390372,7 +411044,7 @@ Material characterisation through adsorption is a widely-used laboratory techniq
     sc:url "https://github.com/pauliacomi/pyGAPS" .
 
 <https://bio.tools/pyOpenMS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0601,
@@ -390390,7 +411062,7 @@ Material characterisation through adsorption is a widely-used laboratory techniq
     biotools:primaryContact "Hannes L. Rost" .
 
 <https://bio.tools/pyPESTO> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2269 ;
     sc:citation <https://doi.org/10.1101/848648> ;
@@ -390404,14 +411076,14 @@ Material characterisation through adsorption is a widely-used laboratory techniq
 
 <https://bio.tools/pyQms> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3244" ;
+            sc:name "Mass spectrometry spectra" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Expression data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3172 ;
@@ -390430,7 +411102,7 @@ Material characterisation through adsorption is a widely-used laboratory techniq
     sc:url "https://github.com/pyQms/pyqms" .
 
 <https://bio.tools/pyTFA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3172,
@@ -390449,8 +411121,32 @@ Material characterisation through adsorption is a widely-used laboratory techniq
     sc:url "https://github.com/EPFL-LCSB/pytfa" ;
     biotools:primaryContact "Laboratory of Computational Systems Biotechnology" .
 
+<https://bio.tools/py_diaid> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0080,
+        edam:topic_0121,
+        edam:topic_0601,
+        edam:topic_3292,
+        edam:topic_3520 ;
+    sc:citation <https://doi.org/10.1016/J.MCPRO.2022.100279>,
+        "pmcid:PMC9465115",
+        "pubmed:35944843" ;
+    sc:description "Rapid and In-Depth Coverage of the (Phospho-)Proteome With Deep Libraries and Optimal Window Design for dia-PASEF." ;
+    sc:featureList edam:operation_0417,
+        edam:operation_0479,
+        edam:operation_3755,
+        edam:operation_3799 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Apache-2.0" ;
+    sc:name "py_diAID" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/MannLabs/pydiAID" .
+
 <https://bio.tools/pyactigraphy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_3303,
         edam:topic_3382 ;
@@ -390462,7 +411158,7 @@ Material characterisation through adsorption is a widely-used laboratory techniq
     sc:url "https://ghammad.github.io/pyActigraphy/tutorials.html" .
 
 <https://bio.tools/pyampli> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2885,
         edam:topic_3168 ;
@@ -390478,7 +411174,7 @@ Material characterisation through adsorption is a widely-used laboratory techniq
     biotools:primaryContact "Matthias Beyens" .
 
 <https://bio.tools/pyani> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0637,
@@ -390498,7 +411194,7 @@ Material characterisation through adsorption is a widely-used laboratory techniq
     biotools:primaryContact <https://orcid.org/0000-0002-8392-2822> .
 
 <https://bio.tools/pyatomdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0593 ;
     sc:citation <https://doi.org/10.20944/PREPRINTS202007.0609.V1> ;
     sc:description """Extending the AtomDB Atomic Database to Model New Plasma Processes and Uncertainties.
@@ -390511,7 +411207,7 @@ This code is designed to interact with the AtomDB database. It is in active deve
     sc:url "https://github.com/AtomDB/pyatomdb" .
 
 <https://bio.tools/pyautofep> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0209,
@@ -390535,7 +411231,7 @@ This code is designed to interact with the AtomDB database. It is in active deve
     sc:url "https://github.com/lmmpf/PyAutoFEP" .
 
 <https://bio.tools/pybamview> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0097,
@@ -390549,7 +411245,7 @@ This code is designed to interact with the AtomDB database. It is in active deve
     sc:url "https://github.com/mgymrek/pybamview" .
 
 <https://bio.tools/pybedgraph> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3169,
         edam:topic_3170,
         edam:topic_3940 ;
@@ -390569,7 +411265,7 @@ Partly written in Cython for speed improvements.""" ;
     sc:url "https://github.com/TheJacksonLaboratory/pyBedGraph" .
 
 <https://bio.tools/pybedtools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0622 ;
     sc:citation "pubmed:21949271" ;
@@ -390584,7 +411280,7 @@ Partly written in Cython for speed improvements.""" ;
     biotools:primaryContact "GitHub Issues" .
 
 <https://bio.tools/pybel> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -390607,7 +411303,7 @@ Partly written in Cython for speed improvements.""" ;
     biotools:primaryContact <https://orcid.org/0000-0003-4423-4370> .
 
 <https://bio.tools/pybindingcurve> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0154,
         edam:topic_0749,
@@ -390623,7 +411319,7 @@ PyBindingCurve is a Python package for simulation, plotting and fitting of exper
     sc:url "https://github.com/stevenshave/pybindingcurve" .
 
 <https://bio.tools/pybiomed> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0092,
@@ -390645,7 +411341,7 @@ PyBindingCurve is a Python package for simulation, plotting and fitting of exper
     biotools:primaryContact "Dong-Sheng Cao" .
 
 <https://bio.tools/pybios> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3300,
         edam:topic_3335,
         edam:topic_3474 ;
@@ -390662,7 +411358,7 @@ Any interested researcher can obtain PyBioS free of charge upon request to the e
     sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=32866762" .
 
 <https://bio.tools/pyboat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0769,
         edam:topic_3315 ;
@@ -390681,19 +411377,22 @@ Tools for time-frequency analysis of noisy time series. The accompanying manuscr
 
 <https://bio.tools/pybravo> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1026" ;
-            sc:name "Gene symbol" ;
-            sc:sameAs "http://edamontology.org/data_1026" ] ;
+            sc:additionalType "http://edamontology.org/data_1026" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Gene symbol" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:encodingFormat "http://edamontology.org/format_3619" ;
+            sc:name "Pathway or network" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2259 ;
     sc:author <https://orcid.org/0000-0002-3093-5873>,
         <https://orcid.org/0000-0002-3597-8557> ;
+    sc:citation <https://doi.org/10.1093/database/baaa113>,
+        "pmcid:PMC7812716",
+        "pubmed:33459761" ;
     sc:description "From a list of genes, pyBRAvo produces upstream regulation or signaling networks. pyBRAvo internally leverages the BioPAX ontolgy, the PathwayCommons knowledge graph, and the SPARQL semantic web query language. pyBRAvo can be used through either a Jupyter notebook, or a command line interface." ;
     sc:featureList edam:operation_3929 ;
     sc:isAccessibleForFree true ;
@@ -390705,7 +411404,7 @@ Tools for time-frequency analysis of noisy time series. The accompanying manuscr
     biotools:primaryContact <https://orcid.org/0000-0002-3597-8557> .
 
 <https://bio.tools/pycabnn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3300,
         edam:topic_3304,
@@ -390725,7 +411424,7 @@ Pycabnn (Python tool for Constructing an Anatomical Basis of a Neural Network; p
     sc:url "https://github.com/CNS-oist/pycabnn" .
 
 <https://bio.tools/pycdft> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0176,
         edam:topic_3047,
         edam:topic_3382 ;
@@ -390737,7 +411436,7 @@ Pycabnn (Python tool for Constructing an Anatomical Basis of a Neural Network; p
     sc:url "https://github.com/hema-ted/pycdft" .
 
 <https://bio.tools/pycellerator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2259 ;
@@ -390752,7 +411451,7 @@ Pycabnn (Python tool for Constructing an Anatomical Basis of a Neural Network; p
     sc:url "https://github.com/biomathman/pycellerator" .
 
 <https://bio.tools/pycheminf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2258 ;
     sc:author "Stanislav Geidl" ;
@@ -390766,7 +411465,7 @@ Pycabnn (Python tool for Constructing an Anatomical Basis of a Neural Network; p
     biotools:primaryContact "Stanislav Geidl" .
 
 <https://bio.tools/pychimera> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_1317,
@@ -390783,7 +411482,7 @@ Pycabnn (Python tool for Constructing an Anatomical Basis of a Neural Network; p
         "Jean-Didier Maréchal" .
 
 <https://bio.tools/pyclone-vi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0622,
         edam:topic_2269,
@@ -390801,7 +411500,7 @@ PyClone-VI is a fast method for inferring clonal population structure.""" ;
     sc:url "https://github.com/Roth-Lab/pyclone-vi" .
 
 <https://bio.tools/pycogent> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3070 ;
     sc:citation <https://doi.org/10.1186/gb-2007-8-8-r171> ;
@@ -390817,7 +411516,7 @@ PyClone-VI is a fast method for inferring clonal population structure.""" ;
     biotools:primaryContact "Australia" .
 
 <https://bio.tools/pycombat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2269,
         edam:topic_3518 ;
@@ -390833,7 +411532,7 @@ pyComBat is a Python 3 implementation of ComBat, one of the most widely used too
     sc:url "https://github.com/epigenelabs/pyComBat" .
 
 <https://bio.tools/pyconsfold> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0130,
@@ -390855,7 +411554,7 @@ pyconsFold require a working installation of CNS. This needs to be done manually
     sc:url "https://github.com/johnlamb/pyconsfold" .
 
 <https://bio.tools/pycontact> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0128,
@@ -390872,7 +411571,7 @@ pyconsFold require a working installation of CNS. This needs to be done manually
     biotools:primaryContact "Maximilian Scheurer" .
 
 <https://bio.tools/pycontrol> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3070,
@@ -390887,7 +411586,7 @@ pyconsFold require a working installation of CNS. This needs to be done manually
     sc:url "https://github.com/pyControl" .
 
 <https://bio.tools/pyconvu-net> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0602,
@@ -390901,8 +411600,22 @@ pyconsFold require a working installation of CNS. This needs to be done manually
     sc:name "PyConvU-Net" ;
     sc:url "https://github.com/StevenAZy/PyConvU-Net" .
 
+<https://bio.tools/pycoqc> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0080,
+        edam:topic_3168,
+        edam:topic_3572 ;
+    sc:description "PycoQC computes metrics and generates interactive QC plots for Oxford Nanopore technologies sequencing data." ;
+    sc:featureList edam:operation_2238,
+        edam:operation_3218 ;
+    sc:license "GPL-3.0" ;
+    sc:name "pycoQC" ;
+    sc:softwareVersion "2.5.2" ;
+    sc:url "https://a-slide.github.io/pycoQC/" .
+
 <https://bio.tools/pycotools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0602,
@@ -390918,7 +411631,7 @@ pyconsFold require a working installation of CNS. This needs to be done manually
     biotools:primaryContact "Ciaran Welsh" .
 
 <https://bio.tools/pycurv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0611,
         edam:topic_0621,
         edam:topic_3385,
@@ -390945,7 +411658,7 @@ This package contains Python scripts applying the PyCurv package and combining d
     sc:url "https://github.com/kalemaria/pycurv" .
 
 <https://bio.tools/pydca> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0099,
         edam:topic_0623,
@@ -390964,26 +411677,28 @@ pydca is Python implementation of direct coupling analysis (DCA) of residue coev
     sc:name "pydca" ;
     sc:url "https://github.com/KIT-MBS/pydca" .
 
-<https://bio.tools/pydca_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0099,
-        edam:topic_0623,
-        edam:topic_3170 ;
-    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTZ892>,
-        "pubmed:31778142" ;
-    sc:description """A Comprehensive Software for Direct Coupling Analysis of RNA and Protein Sequences.
-
-Direct coupling analysis software for protein and RNA sequences.
-
-pydca is Python implementation of direct coupling analysis (DCA) of residue coevolution for protein and RNA sequence families using the mean-field and pseudolikelihood maximization algorithms. Given multiple sequence alignment (MSA) files in FASTA format, pydca computes the coevolutionary scores of pairs of sites in the alignment. In addition, when an optional file containing a reference sequence is supplied, scores corresponding to pairs of sites of this reference sequence are computed by mapping the reference sequence to the MSA. The software provides command line utilities or it can be used as a library""" ;
-    sc:featureList edam:operation_0337,
-        edam:operation_2422,
-        edam:operation_3192 ;
-    sc:license "MIT" ;
-    sc:name "pydca_autogenerated" ;
-    sc:url "https://github.com/KIT-MBS/pydca" .
+<https://bio.tools/pydesigner> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_0769,
+        edam:topic_3444 ;
+    sc:citation <https://doi.org/10.1101/2021.10.20.465189> ;
+    sc:description "A Pythonic Implementation of the DESIGNER Pipeline for Diffusion Tensor and Diffusional Kurtosis Imaging." ;
+    sc:featureList edam:operation_3443,
+        edam:operation_3454,
+        edam:operation_3799 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Other" ;
+    sc:name "PyDesigner" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://pydesigner.readthedocs.io/en/latest/> ;
+    sc:url "https://github.com/m-ama/PyDesigner" .
 
 <https://bio.tools/pydish> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0130,
         edam:topic_0154,
         edam:topic_0203,
@@ -391000,7 +411715,7 @@ PyDISH is a database of heme porphyrin structures and provides some analytical t
     sc:url "http://pydish.bio.info.hiroshima-cu.ac.jp/" .
 
 <https://bio.tools/pydna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0654,
@@ -391018,14 +411733,14 @@ PyDISH is a database of heme porphyrin structures and provides some analytical t
 
 <https://bio.tools/pydock> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1756" ;
-            sc:name "Protein residue" ;
-            sc:sameAs "http://edamontology.org/data_1756" ] ;
+            sc:additionalType "http://edamontology.org/data_1756" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein residue" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2877" ;
-            sc:name "Protein complex" ;
-            sc:sameAs "http://edamontology.org/data_2877" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2877" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein complex" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0082 ;
     sc:author <https://orcid.org/0000-0002-3986-7686> ;
@@ -391042,18 +411757,18 @@ PyDISH is a database of heme porphyrin structures and provides some analytical t
 
 <https://bio.tools/pydockdna> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1459" ;
-            sc:name "Nucleic acid structure" ;
-            sc:sameAs "http://edamontology.org/data_1459" ],
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein structure" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ] ;
+            sc:additionalType "http://edamontology.org/data_1459" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Nucleic acid structure" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0906" ;
-            sc:name "Protein interaction data" ;
-            sc:sameAs "http://edamontology.org/data_0906" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0906" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein interaction data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0078 ;
@@ -391072,14 +411787,13 @@ PyDISH is a database of heme porphyrin structures and provides some analytical t
 
 <https://bio.tools/pydockrescoring_server> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3786" ;
-            sc:name "Query script" ;
-            sc:sameAs "http://edamontology.org/data_3786" ] ;
+            sc:additionalType "http://edamontology.org/data_3786" ;
+            sc:name "Query script" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2877" ;
-            sc:name "Protein complex" ;
-            sc:sameAs "http://edamontology.org/data_2877" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2877" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein complex" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2275,
         edam:topic_3306 ;
@@ -391097,18 +411811,18 @@ PyDISH is a database of heme porphyrin structures and provides some analytical t
 
 <https://bio.tools/pydocksaxs> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0937" ;
-            sc:name "Electron density map" ;
-            sc:sameAs "http://edamontology.org/data_0937" ],
+            sc:additionalType "http://edamontology.org/data_0937" ;
+            sc:encodingFormat "http://edamontology.org/format_1637" ;
+            sc:name "Electron density map" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0883" ;
-            sc:name "Structure" ;
-            sc:sameAs "http://edamontology.org/data_0883" ] ;
+            sc:additionalType "http://edamontology.org/data_0883" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Structure" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2877" ;
-            sc:name "Protein complex" ;
-            sc:sameAs "http://edamontology.org/data_2877" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2877" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein complex" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3332 ;
     sc:author <http://orcid.org/0000-0001-7786-2109>,
@@ -391132,14 +411846,14 @@ PyDISH is a database of heme porphyrin structures and provides some analytical t
 
 <https://bio.tools/pydockweb> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ] ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein structure" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2877" ;
-            sc:name "Protein complex" ;
-            sc:sameAs "http://edamontology.org/data_2877" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2877" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein complex" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3332 ;
     sc:author <http://orcid.org/0000-0001-7786-2109>,
@@ -391160,7 +411874,7 @@ PyDISH is a database of heme porphyrin structures and provides some analytical t
     sc:url "https://life.bsc.es/pid/pydockweb" .
 
 <https://bio.tools/pydream> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3307,
@@ -391176,7 +411890,7 @@ PyDISH is a database of heme porphyrin structures and provides some analytical t
     biotools:primaryContact "Carlos F Lopez" .
 
 <https://bio.tools/pydstool> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2259,
@@ -391198,7 +411912,7 @@ PyDISH is a database of heme porphyrin structures and provides some analytical t
     sc:url "https://web.archive.org/web/20171201062820/http://www.ni.gsu.edu:80/~rclewley/PyDSTool/FrontPage.html" .
 
 <https://bio.tools/pyemd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3315,
         edam:topic_3318,
@@ -391215,7 +411929,7 @@ PyDISH is a database of heme porphyrin structures and provides some analytical t
     sc:url "https://github.com/laszukdawid/PyEMD" .
 
 <https://bio.tools/pyfaidx> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0080 ;
@@ -391232,7 +411946,7 @@ PyDISH is a database of heme porphyrin structures and provides some analytical t
     sc:url "https://pythonhosted.org/pyfaidx/" .
 
 <https://bio.tools/pyfasta> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0080 ;
@@ -391248,7 +411962,7 @@ PyDISH is a database of heme porphyrin structures and provides some analytical t
     sc:url "https://github.com/brentp/pyfasta/" .
 
 <https://bio.tools/pyfastaq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "Python3 script to manipulate FASTA and FASTQ (and other format) files, plus API for developers" ;
     sc:featureList edam:operation_0363,
         edam:operation_3192,
@@ -391258,7 +411972,7 @@ PyDISH is a database of heme porphyrin structures and provides some analytical t
     sc:url "https://github.com/sanger-pathogens/Fastaq" .
 
 <https://bio.tools/pyfastx> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0749,
         edam:topic_3168 ;
@@ -391277,7 +411991,7 @@ All tools support for random access were used to perform benchmark.""" ;
     sc:url "https://pypi.org/project/pyfastx" .
 
 <https://bio.tools/pyfdap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3315,
         edam:topic_3318 ;
@@ -391292,7 +412006,7 @@ All tools support for random access were used to perform benchmark.""" ;
     sc:url "http://people.tuebingen.mpg.de/mueller-lab/" .
 
 <https://bio.tools/pyflosic> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0593,
         edam:topic_3314,
         edam:topic_3318,
@@ -391310,7 +412024,7 @@ The development of PyFLOSIC started with the master's thesis of Lenz Fiedler. Ov
     sc:url "https://github.com/pyflosic/pyflosic" .
 
 <https://bio.tools/pyfolding> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3510 ;
@@ -391328,7 +412042,7 @@ The development of PyFLOSIC started with the master's thesis of Lenz Fiedler. Ov
     biotools:primaryContact <https://orcid.org/0000-0002-0558-3597> .
 
 <https://bio.tools/pyfoldx> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0199,
@@ -391348,7 +412062,7 @@ The development of PyFLOSIC started with the master's thesis of Lenz Fiedler. Ov
     sc:url "https://github.com/leandroradusky/pyFoldX" .
 
 <https://bio.tools/pyfoomb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3068,
         edam:topic_3297,
         edam:topic_3315 ;
@@ -391364,7 +412078,7 @@ Intented application is the acessible modelling of simple to medium complex biop
     sc:url "http://github.com/MicroPhen/pyFOOMB" .
 
 <https://bio.tools/pyfrap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3370,
@@ -391380,7 +412094,7 @@ Intented application is the acessible modelling of simple to medium complex biop
     biotools:primaryContact "Alexander Bläßle" .
 
 <https://bio.tools/pygbe> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0166,
         edam:topic_3314,
         edam:topic_3315 ;
@@ -391398,7 +412112,7 @@ PyGBe achieves both algorithmic and hardware acceleration. The solution algorith
     sc:url "http://pygbe.github.io/pygbe/docs/" .
 
 <https://bio.tools/pygenn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Suite" ;
     sc:applicationSubCategory edam:topic_3304,
@@ -391414,7 +412128,7 @@ PyGBe achieves both algorithmic and hardware acceleration. The solution algorith
     sc:url "https://github.com/BrainsOnBoard/pygenn_paper" .
 
 <https://bio.tools/pygenometracks> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0769,
         edam:topic_3382 ;
@@ -391433,7 +412147,7 @@ pyGenomeTracks aims to produce high-quality genome browser tracks that are highl
     sc:url "https://github.com/deeptools/pyGenomeTracks" .
 
 <https://bio.tools/pygna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0769,
         edam:topic_2640,
@@ -391453,7 +412167,7 @@ A simple Snakemake workflow to perform network analyses using the Python Geneset
     sc:url "http://github.com/stracquadaniolab/pygna" .
 
 <https://bio.tools/pygold> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2275,
         edam:topic_2814,
@@ -391469,7 +412183,7 @@ A simple Snakemake workflow to perform network analyses using the Python Geneset
     biotools:primaryContact "Oliver Koch" .
 
 <https://bio.tools/pygted> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0605,
         edam:topic_3315,
@@ -391486,8 +412200,19 @@ Graph Traversal Edit Distance (GTED) is a measure of distance (or dissimilarity)
     sc:name "PyGTED" ;
     sc:url "https://github.com/Ali-E/GTED" .
 
+<https://bio.tools/pyhca> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:citation <https://doi.org/10.1101/249995> ;
+    sc:description "pyHCA and hcatk (HCA toolkit) are a python library and executable for the Hydrophobic Cluster Analysis of protein sequences. pyHCA implements various class and function for handling sequences and analyses them hcatk provides off the hands set of program to perform hydrophobic cluster analyses." ;
+    sc:isAccessibleForFree true ;
+    sc:license "CECILL-C" ;
+    sc:name "pyHCA" ;
+    sc:operatingSystem "Linux" ;
+    sc:url "https://github.com/T-B-F/pyHCA/" .
+
 <https://bio.tools/pyhdx> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
         edam:topic_0176,
@@ -391505,7 +412230,7 @@ Abstract Hydrogen Deuterium Exchange Mass Spectrometry (HDX-MS) is a powerful te
     sc:url "https://github.com/Jhsmit/PyHDX" .
 
 <https://bio.tools/pyhi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0202,
@@ -391526,14 +412251,13 @@ Abstract Hydrogen Deuterium Exchange Mass Spectrometry (HDX-MS) is a powerful te
 
 <https://bio.tools/pyhist> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ] ;
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_2333" ;
+            sc:name "Image" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:name "Image" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3382,
         edam:topic_3474 ;
@@ -391550,7 +412274,7 @@ Abstract Hydrogen Deuterium Exchange Mass Spectrometry (HDX-MS) is a powerful te
     sc:url "https://github.com/manuel-munoz-aguirre/PyHIST" .
 
 <https://bio.tools/pyhla> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2830,
@@ -391571,7 +412295,7 @@ Abstract Hydrogen Deuterium Exchange Mass Spectrometry (HDX-MS) is a powerful te
     biotools:primaryContact "Yanhui Fan" .
 
 <https://bio.tools/pyicoteo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622 ;
     sc:author "J. Gonzalez-Vallinas" ;
@@ -391594,7 +412318,7 @@ Abstract Hydrogen Deuterium Exchange Mass Spectrometry (HDX-MS) is a powerful te
     biotools:primaryContact "Eduardo Eyras" .
 
 <https://bio.tools/pyinknife2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0749,
         edam:topic_2814 ;
@@ -391612,7 +412336,7 @@ PyInKnife2 is a set of Python scripts to run an updated version of the PyInKnife
     sc:url "https://github.com/ELELAB/PyInKnife2" .
 
 <https://bio.tools/pyiomica> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0091,
         edam:topic_0602 ;
@@ -391634,7 +412358,7 @@ Free document hosting provided by Read the Docs""" ;
     sc:url "https://pypi.python.org/pypi/pyiomica" .
 
 <https://bio.tools/pyir> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_2830,
         edam:topic_3168,
@@ -391652,7 +412376,7 @@ PyIR is a minimally-dependent high-speed wrapper for the IgBLAST immunoglobulin
     sc:url "http://github.com/crowelab/PyIR" .
 
 <https://bio.tools/pyjamas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3382,
@@ -391673,7 +412397,7 @@ PyIR is a minimally-dependent high-speed wrapper for the IgBLAST immunoglobulin
     sc:url "https://bitbucket.org/rfg_lab/pyjamas" .
 
 <https://bio.tools/pykneer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3372,
         edam:topic_3384,
@@ -391693,7 +412417,7 @@ Transparent research in musculoskeletal imaging is fundamental to reliably inves
     sc:url "https://sbonaretti.github.io/pyKNEEr/index.html" .
 
 <https://bio.tools/pykrev> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_2258,
         edam:topic_3315,
@@ -391710,8 +412434,49 @@ Transparent research in musculoskeletal imaging is fundamental to reliably inves
     sc:url "https://github.com/Kzra/pykrev" ;
     biotools:primaryContact <https://orcid.org/0000-0001-7887-2659> .
 
+<https://bio.tools/pykvfinder> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_0883" ;
+            sc:encodingFormat "http://edamontology.org/format_3877" ;
+            sc:name "Structure" ] ;
+    bsc:output [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2878" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Protein structural motif" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Library",
+        "Script" ;
+    sc:applicationSubCategory edam:topic_0081,
+        edam:topic_0166,
+        edam:topic_0769,
+        edam:topic_1317,
+        edam:topic_3315,
+        edam:topic_3332,
+        edam:topic_3474 ;
+    sc:author <https://orcid.org/0000-0002-6800-4425> ;
+    sc:citation <https://doi.org/10.1186/S12859-021-04519-4>,
+        "pmcid:PMC8685811",
+        "pubmed:34930115" ;
+    sc:description "Python-C Parallel KVFinder (pyKVFinder) is an efficient and integrable Python package for biomolecular cavity detection and characterization in data science. Besides conventional cavity properties such as volume and area, which are stored as Python dictionaries, pyKVFinder computes cavity depth and hydropathy. Similar to cavity points, these spatial and physicochemical properties are stored as Python ndarrays and can be visualized using Python molecular visualization widgets. In general, pyKVFinder is designed for efficient scripting routines built on easy-to-handle data structures, such as Python dictionaries and NumPy N-dimensional arrays (ndarrays), and can be building blocks for data science and drug design applications." ;
+    sc:featureList edam:operation_0250,
+        edam:operation_2483,
+        edam:operation_2575,
+        edam:operation_3351 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "pyKVFinder" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:provider <https://orcid.org/0000-0002-1287-8019> ;
+    sc:softwareHelp <https://lbc-lnbio.github.io/pyKVFinder/> ;
+    sc:url "https://github.com/LBC-LNBio/pyKVFinder" ;
+    biotools:primaryContact <https://orcid.org/0000-0002-1287-8019>,
+        <https://orcid.org/0000-0002-6800-4425> .
+
 <https://bio.tools/pylae> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2885,
         edam:topic_3516,
@@ -391729,7 +412494,7 @@ pip3 install -r requirements.txt.""" ;
     sc:url "https://github.com/smetam/pylae" .
 
 <https://bio.tools/pylda> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0593 ;
     sc:citation <https://doi.org/10.1371/journal.pcbi.1005528> ;
@@ -391745,14 +412510,14 @@ pip3 install -r requirements.txt.""" ;
 
 <https://bio.tools/pyldm> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2024" ;
-            sc:name "Enzyme kinetics data" ;
-            sc:sameAs "http://edamontology.org/data_2024" ] ;
+            sc:additionalType "http://edamontology.org/data_2024" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Enzyme kinetics data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1636" ;
-            sc:name "Heat map" ;
-            sc:sameAs "http://edamontology.org/data_1636" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1636" ;
+            sc:encodingFormat "http://edamontology.org/format_2060" ;
+            sc:name "Heat map" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0821,
         edam:topic_3292,
@@ -391771,8 +412536,48 @@ pip3 install -r requirements.txt.""" ;
     sc:url "https://github.com/gadorlhiac/PyLDM" ;
     biotools:primaryContact "Jasper J. van Thor" .
 
+<https://bio.tools/pylenm> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_2269,
+        edam:topic_3393,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1021/ACS.EST.1C07440>,
+        "pmcid:PMC9069689",
+        "pubmed:35427133" ;
+    sc:description "A Machine Learning Framework for Long-Term Groundwater Contamination Monitoring Strategies." ;
+    sc:featureList edam:operation_3659,
+        edam:operation_3891,
+        edam:operation_3935 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "PyLEnM" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://pylenm.readthedocs.io/en/latest/> ;
+    sc:url "https://pypi.org/project/pylenm/" .
+
+<https://bio.tools/pyliger> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0089,
+        edam:topic_3366,
+        edam:topic_3572 ;
+    sc:citation <https://doi.org/10.1093/bioinformatics/btac190>,
+        "pubmed:35561174" ;
+    sc:description "Scalable single-cell multi-omic data integration in Python." ;
+    sc:featureList edam:operation_2436 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "PyLiger" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/welch-lab/pyliger" .
+
 <https://bio.tools/pylipid> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0153,
         edam:topic_0166,
@@ -391797,7 +412602,7 @@ pip3 install -r requirements.txt.""" ;
     sc:url "https://github.com/wlsong/PyLipID" .
 
 <https://bio.tools/pyloh> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_2640,
@@ -391813,7 +412618,7 @@ pip3 install -r requirements.txt.""" ;
     sc:url "https://cbcl.ics.uci.edu//doku.php/software#pyloh" .
 
 <https://bio.tools/pymbar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0176,
         edam:topic_0202,
@@ -391837,14 +412642,12 @@ pip3 install -r requirements.txt.""" ;
 
 <https://bio.tools/pymdsetup> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0883" ;
-            sc:name "Structure" ;
-            sc:sameAs "http://edamontology.org/data_0883" ] ;
+            sc:additionalType "http://edamontology.org/data_0883" ;
+            sc:name "Structure" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0883" ;
-            sc:name "Structure" ;
-            sc:sameAs "http://edamontology.org/data_0883" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0883" ;
+            sc:name "Structure" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library",
         "Suite",
@@ -391863,7 +412666,7 @@ pip3 install -r requirements.txt.""" ;
     biotools:primaryContact "Pau Andrio" .
 
 <https://bio.tools/pymeshsim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0634,
         edam:topic_3517 ;
@@ -391878,7 +412681,7 @@ pip3 install -r requirements.txt.""" ;
     sc:url "https://pymeshsim.readthedocs.io/en/latest/" .
 
 <https://bio.tools/pymethylprocess> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3295,
         edam:topic_3518 ;
@@ -391892,7 +412695,7 @@ pip3 install -r requirements.txt.""" ;
     sc:url "https://github.com/Christensen-Lab-Dartmouth/PyMethylProcess" .
 
 <https://bio.tools/pymevisualize> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0769,
         edam:topic_3382 ;
@@ -391907,7 +412710,7 @@ Localization-based super-resolution microscopy techniques such as PALM, STORM, a
     sc:url "https://python-microscopy.org/" .
 
 <https://bio.tools/pymia> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3384,
         edam:topic_3452,
@@ -391925,7 +412728,7 @@ pymia is an open-source Python (py) package for deep learning-based medical imag
     sc:url "https://github.com/rundherum/pymia" .
 
 <https://bio.tools/pymod> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0081,
@@ -391943,7 +412746,7 @@ pymia is an open-source Python (py) package for deep learning-based medical imag
     sc:url "http://schubert.bio.uniroma1.it/pymod/index.html" .
 
 <https://bio.tools/pymol> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_2275,
@@ -391960,7 +412763,7 @@ pymia is an open-source Python (py) package for deep learning-based medical imag
     sc:url "http://www.pymol.org/pymol" .
 
 <https://bio.tools/pymolshortcuts> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_3306,
         edam:topic_3382 ;
@@ -391977,40 +412780,61 @@ The repository pymolschortucts contains a collection of shortcuts that are loade
     sc:name "PyMOL" ;
     sc:url "http://github.com/MooersLab/pymolshortcuts" .
 
+<https://bio.tools/pymonnto> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_3179,
+        edam:topic_3299,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.3389/FNINF.2021.715131>,
+        "pmcid:PMC8591031",
+        "pubmed:34790108" ;
+    sc:description "The \"Python Modular Neural Network Toolbox\" allows you to create neuron groups, define their behaviour and connect them with synapse groups." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3927 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "PymoNNto" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://pymonnto.readthedocs.io> ;
+    sc:url "https://github.com/trieschlab/PymoNNto" .
+
 <https://bio.tools/pyms> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0944" ;
-            sc:name "Peptide mass fingerprint" ;
-            sc:sameAs "http://edamontology.org/data_0944" ],
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3650" ;
+            sc:name "Mass spectrometry spectra" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0944" ;
-            sc:name "Peptide mass fingerprint" ;
-            sc:sameAs "http://edamontology.org/data_0944" ],
+            sc:additionalType "http://edamontology.org/data_0944" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Peptide mass fingerprint" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ],
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3650" ;
+            sc:name "Mass spectrometry spectra" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
+            sc:additionalType "http://edamontology.org/data_0944" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Peptide mass fingerprint" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0944" ;
-            sc:name "Peptide mass fingerprint" ;
-            sc:sameAs "http://edamontology.org/data_0944" ],
+            sc:additionalType "http://edamontology.org/data_0944" ;
+            sc:encodingFormat "http://edamontology.org/format_1637" ;
+            sc:name "Peptide mass fingerprint" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ],
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_1637" ;
+            sc:name "Mass spectrometry spectra" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0944" ;
-            sc:name "Peptide mass fingerprint" ;
-            sc:sameAs "http://edamontology.org/data_0944" ],
+            sc:additionalType "http://edamontology.org/data_0944" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Peptide mass fingerprint" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Mass spectrometry spectra" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -392032,7 +412856,7 @@ The repository pymolschortucts contains a collection of shortcuts that are loade
     sc:url "https://code.google.com/p/pyms/" .
 
 <https://bio.tools/pymspannotator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3172 ;
     sc:description "Tool that adds more annotations (e.g. SMILES, InChI, CAS number) to MSP files." ;
@@ -392043,7 +412867,7 @@ The repository pymolschortucts contains a collection of shortcuts that are loade
     sc:url "https://github.com/RECETOX/pyMSPannotator" .
 
 <https://bio.tools/pymsxml> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2259,
         edam:topic_3070,
@@ -392059,14 +412883,14 @@ The repository pymolschortucts contains a collection of shortcuts that are loade
 
 <https://bio.tools/pymut> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2974" ;
-            sc:name "Protein sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_2974" ] ;
+            sc:additionalType "http://edamontology.org/data_2974" ;
+            sc:encodingFormat "http://edamontology.org/format_2200" ;
+            sc:name "Protein sequence (raw)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Protein features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0080 ;
@@ -392086,16 +412910,37 @@ The repository pymolschortucts contains a collection of shortcuts that are loade
     sc:url "http://mmb.irbbarcelona.org/PMut/pymut" ;
     biotools:primaryContact <http://orcid.org/0000-0002-2035-7555> .
 
+<https://bio.tools/pymvpd> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0769,
+        edam:topic_2269,
+        edam:topic_3304,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1101/2021.10.12.464157> ;
+    sc:description "PyMVPD is a Python-based toolbox to model the multivariate interactions between brain regions using fMRI data." ;
+    sc:featureList edam:operation_3659,
+        edam:operation_3891,
+        edam:operation_3927 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "PyMVPD" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://github.com/sccnlab/PyMVPD/blob/main/exp/PyMVPD_Tutorial.ipynb> ;
+    sc:url "https://github.com/sccnlab/PyMVPD.git" .
+
 <https://bio.tools/pymzml> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3244" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3244" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3520 ;
     sc:citation "pubmed:22302572",
@@ -392113,7 +412958,7 @@ The repository pymolschortucts contains a collection of shortcuts that are loade
     sc:url "http://pymzml.github.com" .
 
 <https://bio.tools/pyneal> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3304,
         edam:topic_3384,
@@ -392140,7 +412985,7 @@ This respository contains representative data from GE, Siemens, and Philips scan
     sc:url "https://github.com/jeffmacinnes/pyneal" .
 
 <https://bio.tools/pyntacle> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0091 ;
@@ -392157,7 +413002,7 @@ This respository contains representative data from GE, Siemens, and Philips scan
     sc:url "http://pyntacle.css-mendel.it/" .
 
 <https://bio.tools/pyoif> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0176,
         edam:topic_2229,
@@ -392177,7 +413022,7 @@ A user ready, well documented software package PyOIF contains an implementation
     sc:url "https://github.com/icimrak/espresso/releases/tag/pyoif-v2.0" .
 
 <https://bio.tools/pyomeroupload> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3071,
         edam:topic_3382 ;
     sc:citation <https://doi.org/10.12688/WELLCOMEOPENRES.15853.2>,
@@ -392200,7 +413045,7 @@ Example data, notebooks and scripts for demonstrating features of OMEROConnect a
     sc:url "https://github.com/SynthSys/pyOmeroUpload" .
 
 <https://bio.tools/pypanda> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0602,
@@ -392220,7 +413065,7 @@ Example data, notebooks and scripts for demonstrating features of OMEROConnect a
         "Marieke L. Kuijjer" .
 
 <https://bio.tools/pypdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -392238,7 +413083,7 @@ Example data, notebooks and scripts for demonstrating features of OMEROConnect a
     sc:url "https://github.com/williamgilpin/pypdb" .
 
 <https://bio.tools/pypgatk> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0154,
@@ -392260,7 +413105,7 @@ Example data, notebooks and scripts for demonstrating features of OMEROConnect a
     sc:url "https://github.com/bigbio/py-pgatk/" .
 
 <https://bio.tools/pyphase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2828,
         edam:topic_3385,
@@ -392281,7 +413126,7 @@ Example data, notebooks and scripts for demonstrating features of OMEROConnect a
     sc:url "https://gitlab.in2p3.fr/mlanger/pyPhase" .
 
 <https://bio.tools/pyphe> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0625,
         edam:topic_3382,
@@ -392297,8 +413142,27 @@ A python toolbox for phenotype analysis of arrayed microbial colonies written by
     sc:name "pyphe" ;
     sc:url "http://www.github.com/Bahler-Lab/pyphe" .
 
+<https://bio.tools/pyphewas> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0089,
+        edam:topic_0625,
+        edam:topic_3384,
+        edam:topic_3517 ;
+    sc:citation <https://doi.org/10.1007/S12021-021-09553-4>,
+        "pubmed:34981404" ;
+    sc:description "A Phenome-Disease Association Tool for Electronic Medical Record Analysis." ;
+    sc:featureList edam:operation_0337 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "pyPheWAS" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://pyphewas.readthedocs.io/en/latest/" .
+
 <https://bio.tools/pypka> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0209,
         edam:topic_3303,
@@ -392316,7 +413180,7 @@ A python module for flexible Poisson-Boltzmann based pKa calculations with proto
     sc:url "https://github.com/mms-fcul/PypKa" .
 
 <https://bio.tools/pyplif> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0128,
@@ -392333,7 +413197,7 @@ A python module for flexible Poisson-Boltzmann based pKa calculations with proto
     sc:url "https://code.google.com/p/pyplif/" .
 
 <https://bio.tools/pyplif-hippo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0780,
         edam:topic_2275,
@@ -392353,7 +413217,7 @@ The current version only support the Sybil mol2 format, but it is planned.""" ;
     sc:url "https://github.com/radifar/PyPLIF-HIPPOS" .
 
 <https://bio.tools/pyplr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0202,
         edam:topic_0769,
@@ -392371,7 +413235,7 @@ The current version only support the Sybil mol2 format, but it is planned.""" ;
     sc:url "https://pypi.org/project/pyplr/" .
 
 <https://bio.tools/pyplutchik> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_3068,
@@ -392392,7 +413256,7 @@ The current version only support the Sybil mol2 format, but it is planned.""" ;
     sc:url "http://github.com/alfonsosemeraro/pyplutchik" .
 
 <https://bio.tools/pypocquant> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3382,
         edam:topic_3386,
         edam:topic_3500 ;
@@ -392406,7 +413270,7 @@ Lateral flow Point-Of-Care Tests (POCTs) are a valuable tool for rapidly detecti
     sc:url "https://gitlab.com/csb.ethz/pypocquant/-/tree/master/" .
 
 <https://bio.tools/pypolybuilder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0176,
         edam:topic_0769,
@@ -392423,7 +413287,7 @@ Lateral flow Point-Of-Care Tests (POCTs) are a valuable tool for rapidly detecti
     biotools:primaryContact <https://orcid.org/0000-0002-3952-1474> .
 
 <https://bio.tools/pyproga> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -392445,8 +413309,29 @@ Lateral flow Point-Of-Care Tests (POCTs) are a valuable tool for rapidly detecti
     sc:softwareHelp <https://gitlab.com/Vlado_S/pyproga/-/blob/master/pyProGA_manual.pdf> ;
     sc:url "https://gitlab.com/Vlado_S/pyproga" .
 
+<https://bio.tools/pyprotmodel> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0078,
+        edam:topic_0154,
+        edam:topic_2275 ;
+    sc:citation <https://doi.org/10.1016/J.JMGM.2022.108134>,
+        "pubmed:35065401" ;
+    sc:description "An easy to use GUI for comparative protein modeling." ;
+    sc:featureList edam:operation_0477,
+        edam:operation_2476,
+        edam:operation_4008,
+        edam:operation_4009 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-2.0" ;
+    sc:name "PyProtModel" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/msisakht/pyprotmodel.git" .
+
 <https://bio.tools/pyrad> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0196,
@@ -392462,8 +413347,50 @@ Lateral flow Point-Of-Care Tests (POCTs) are a valuable tool for rapidly detecti
     sc:url "http://dereneaton.com/software/pyrad/" ;
     biotools:primaryContact "Deren Eaton" .
 
+<https://bio.tools/pyramid-net> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0634,
+        edam:topic_3360,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.3389/FMED.2021.761050>,
+        "pmcid:PMC8688400",
+        "pubmed:34950679" ;
+    sc:description "Intra-layer Pyramid-Scale Feature Aggregation Network for Retinal Vessel Segmentation." ;
+    sc:featureList edam:operation_3436 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "Pyramid-Net" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/JerRuy/Pyramid-Net" .
+
+<https://bio.tools/pyrat> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0621,
+        edam:topic_3300,
+        edam:topic_3304,
+        edam:topic_3474,
+        edam:topic_3500 ;
+    sc:citation <https://doi.org/10.3389/FNINS.2022.779106>,
+        "pmcid:PMC9125180",
+        "pubmed:35615283" ;
+    sc:description "An Open-Source Python Library for Animal Behavior Analysis." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3432,
+        edam:operation_3891 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "PyRAT" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/pyratlib/pyrat" .
+
 <https://bio.tools/pyrice> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0780,
         edam:topic_3071 ;
@@ -392477,7 +413404,7 @@ Lateral flow Point-Of-Care Tests (POCTs) are a valuable tool for rapidly detecti
     sc:url "https://github.com/SouthGreenPlatform/PyRice" .
 
 <https://bio.tools/pyrmd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0632,
         edam:topic_3336,
@@ -392496,7 +413423,7 @@ Lateral flow Point-Of-Care Tests (POCTs) are a valuable tool for rapidly detecti
     sc:url "https://github.com/cosconatilab/PyRMD" .
 
 <https://bio.tools/pyrocleaner> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3572 ;
@@ -392510,7 +413437,7 @@ Lateral flow Point-Of-Care Tests (POCTs) are a valuable tool for rapidly detecti
     sc:url "https://mulcyber.toulouse.inra.fr/plugins/mediawiki/wiki/pyrocleaner/index.php/Main_Page" .
 
 <https://bio.tools/pyromap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102 ;
     sc:citation <https://doi.org/10.1101/gr.6468307> ;
@@ -392524,7 +413451,7 @@ Lateral flow Point-Of-Care Tests (POCTs) are a valuable tool for rapidly detecti
     biotools:primaryContact "HIV db support" .
 
 <https://bio.tools/pyronoise> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3572 ;
     sc:citation "pubmed:19668203" ;
@@ -392537,7 +413464,7 @@ Lateral flow Point-Of-Care Tests (POCTs) are a valuable tool for rapidly detecti
     biotools:primaryContact "Chris Quince" .
 
 <https://bio.tools/pyrosetta> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3372 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btq007> ;
@@ -392552,7 +413479,7 @@ Lateral flow Point-Of-Care Tests (POCTs) are a valuable tool for rapidly detecti
     sc:url "http://www.pyrosetta.org/" .
 
 <https://bio.tools/pyrotrimmer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0632,
@@ -392568,7 +413495,7 @@ Lateral flow Point-Of-Care Tests (POCTs) are a valuable tool for rapidly detecti
     sc:url "http://pyrotrimmer.kopri.re.kr/" .
 
 <https://bio.tools/pyrpipe> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0769,
         edam:topic_3170,
@@ -392593,8 +413520,29 @@ pyrpipe (Pronounced as "pyre-pipe") is a python package to easily develop RNA-Se
     sc:name "pyrpipe" ;
     sc:url "http://pyrpipe.rtfd.io" .
 
+<https://bio.tools/pyrsd-coev> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0625,
+        edam:topic_2885,
+        edam:topic_3316,
+        edam:topic_3500 ;
+    sc:citation <https://doi.org/10.1111/AGE.13151>,
+        "pubmed:34729801" ;
+    sc:description "A python package for selective sweep detection and co-evolutionary gene cluster identification." ;
+    sc:featureList edam:operation_3196,
+        edam:operation_3432,
+        edam:operation_3695 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "pyRSD-CoEv" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/QianZiTang/pyRSD-CoEv" .
+
 <https://bio.tools/pyrx> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0209,
@@ -392613,7 +413561,7 @@ pyrpipe (Pronounced as "pyre-pipe") is a python package to easily develop RNA-Se
     sc:url "http://pyrx.sourceforge.net/" .
 
 <https://bio.tools/pysam> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3168 ;
@@ -392630,7 +413578,7 @@ pyrpipe (Pronounced as "pyre-pipe") is a python package to easily develop RNA-Se
     sc:url "https://github.com/pysam-developers/pysam" .
 
 <https://bio.tools/pysamstats> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3168 ;
@@ -392646,14 +413594,13 @@ pyrpipe (Pronounced as "pyre-pipe") is a python package to easily develop RNA-Se
 
 <https://bio.tools/pysces> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3241" ;
-            sc:name "Kinetic model" ;
-            sc:sameAs "http://edamontology.org/data_3241" ] ;
+            sc:additionalType "http://edamontology.org/data_3241" ;
+            sc:encodingFormat "http://edamontology.org/format_2585" ;
+            sc:name "Kinetic model" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3869" ;
-            sc:name "Simulation" ;
-            sc:sameAs "http://edamontology.org/data_3869" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3869" ;
+            sc:name "Simulation" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2259 ;
     sc:author <http://orcid.org/0000-0002-5293-5321>,
@@ -392677,7 +413624,7 @@ Computer modelling has become an integral tool in the analysis and understanding
     biotools:primaryContact <http://orcid.org/0000-0002-5293-5321> .
 
 <https://bio.tools/pyscestoolbox> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2229,
@@ -392695,7 +413642,7 @@ Computer modelling has become an integral tool in the analysis and understanding
     biotools:primaryContact "Johann M Rohwer" .
 
 <https://bio.tools/pyscf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3314,
         edam:topic_3372,
         edam:topic_3474 ;
@@ -392706,7 +413653,7 @@ Computer modelling has become an integral tool in the analysis and understanding
     sc:url "http://www.PySCF.org" .
 
 <https://bio.tools/pyscnet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0769,
         edam:topic_2229,
@@ -392724,7 +413671,7 @@ Dashboard is available now for creating your own GRNs. Cell specific GRNs and ne
     sc:url "https://github.com/MingBit/PySCNet" .
 
 <https://bio.tools/pyscratch> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3382 ;
     sc:citation <https://doi.org/10.1016/J.CMPB.2020.105476>,
@@ -392738,7 +413685,7 @@ Image acquisition has greatly benefited from the automation of microscopes and h
     sc:url "https://pypi.org/project/pyscratch/#files" .
 
 <https://bio.tools/pyseer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3068,
@@ -392758,7 +413705,7 @@ Image acquisition has greatly benefited from the automation of microscopes and h
         "Marco Galardini" .
 
 <https://bio.tools/pyseq2500> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_2229,
@@ -392779,7 +413726,7 @@ Image acquisition has greatly benefited from the automation of microscopes and h
     sc:url "https://github.com/nygctech/PySeq2500" .
 
 <https://bio.tools/pyshifts> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0154,
         edam:topic_3314,
@@ -392797,7 +413744,7 @@ In PyMOL window, go to Plugin -> Plugin manager -> Install new plugin, choose Py
     sc:url "https://github.com/atfrank/PyShifts" .
 
 <https://bio.tools/pyshs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0176 ;
     sc:citation <https://doi.org/10.26434/CHEMRXIV.12620072.V1> ;
     sc:description "PySHS package is a python open source software which simulates the Second Harmonic Scattering (SHS) of different kind of colloidal nano-object." ;
@@ -392807,7 +413754,7 @@ In PyMOL window, go to Plugin -> Plugin manager -> Install new plugin, choose Py
     sc:url "https://pypi.org/project/pyshs/" .
 
 <https://bio.tools/pysice> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0593 ;
     sc:citation <https://doi.org/10.20944/PREPRINTS202009.0529.V1> ;
     sc:description """Pre-operational Sentinel-3 Snow and Ice (SICE) Products.
@@ -392820,7 +413767,7 @@ sice_f.py reads the SICE-generated S3 geotiff files, converts them into ascii fi
     sc:url "https://github.com/GEUS-SICE/pySICE" .
 
 <https://bio.tools/pysimm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0176,
         edam:topic_3332 ;
@@ -392835,7 +413782,7 @@ sice_f.py reads the SICE-generated S3 geotiff files, converts them into ascii fi
     sc:url "https://pysimm.org/" .
 
 <https://bio.tools/pysmash> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0209,
         edam:topic_0769,
@@ -392856,7 +413803,7 @@ sice_f.py reads the SICE-generated S3 geotiff files, converts them into ascii fi
         "Shao Liu" .
 
 <https://bio.tools/pyspawn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0176,
         edam:topic_0593,
@@ -392873,7 +413820,7 @@ The ab initio multiple spawning (AIMS) method enables nonadiabatic quantum molec
     sc:url "https://github.com/blevine37/pySpawn17" .
 
 <https://bio.tools/pysradb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_3168,
@@ -392894,7 +413841,7 @@ The ab initio multiple spawning (AIMS) method enables nonadiabatic quantum molec
     biotools:primaryContact "Saket Choudhary" .
 
 <https://bio.tools/pysster> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0160,
@@ -392912,8 +413859,24 @@ The ab initio multiple spawning (AIMS) method enables nonadiabatic quantum molec
     sc:url "https://github.com/budach/pysster" ;
     biotools:primaryContact "Jiecong Lin" .
 
+<https://bio.tools/pystablemotifs> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0160 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAB825>,
+        "pubmed:34875008" ;
+    sc:description "Python library for attractor identification and control in Boolean networks." ;
+    sc:featureList edam:operation_3927 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "pystablemotifs" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/jcrozum/pystablemotifs/" .
+
 <https://bio.tools/pystachio> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3047,
@@ -392928,7 +413891,7 @@ The ab initio multiple spawning (AIMS) method enables nonadiabatic quantum molec
     biotools:primaryContact <https://orcid.org/0000-0002-1715-1249> .
 
 <https://bio.tools/pysurf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3071,
         edam:topic_3314,
         edam:topic_3474,
@@ -392943,7 +413906,7 @@ The ab initio multiple spawning (AIMS) method enables nonadiabatic quantum molec
     sc:url "http://github.com/mfsjmenger/pysurf" .
 
 <https://bio.tools/pysustain> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0634,
@@ -392962,7 +413925,7 @@ The ab initio multiple spawning (AIMS) method enables nonadiabatic quantum molec
     sc:url "https://github.com/ucl-pond/pySuStaIn" .
 
 <https://bio.tools/pytarg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0821,
@@ -392982,10 +413945,10 @@ The ab initio multiple spawning (AIMS) method enables nonadiabatic quantum molec
 
 <https://bio.tools/pyteomics> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3654" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -393004,7 +413967,7 @@ The ab initio multiple spawning (AIMS) method enables nonadiabatic quantum molec
     biotools:primaryContact "Issue tracker" .
 
 <https://bio.tools/pytfm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_2229,
         edam:topic_3318,
@@ -393021,7 +413984,7 @@ pyTFM is a python package that allows you to analyze force generation and stress
     sc:url "https://pytfm.readthedocs.io/" .
 
 <https://bio.tools/python-microscope> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library",
         "Workflow" ;
@@ -393041,7 +414004,7 @@ It is aimed at those that are building their own microscopes or want programmati
     sc:url "https://micronoxford.com/python-microscope-cockpit" .
 
 <https://bio.tools/pytorch> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3316,
         edam:topic_3474 ;
@@ -393054,8 +414017,27 @@ It is aimed at those that are building their own microscopes or want programmati
     sc:softwareHelp <https://pytorch.org/tutorials/beginner/basics/quickstart_tutorial.html> ;
     sc:url "https://pytorch.org/" .
 
+<https://bio.tools/pytoxo> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0625,
+        edam:topic_0634,
+        edam:topic_3068,
+        edam:topic_3974 ;
+    sc:citation <https://doi.org/10.1186/S12859-022-04645-7>,
+        "pmcid:PMC8977015",
+        "pubmed:35366804" ;
+    sc:description "A Python tool for calculating penetrance tables of high-order epistasis models." ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "PyToxo" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/bglezseoane/pytoxo" .
+
 <https://bio.tools/pytrack> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3382,
         edam:topic_3520 ;
@@ -393078,7 +414060,7 @@ This involves extraction of parameters or meta-data related to blinks, fixations
     sc:url "https://pytrack-ntu.rtfd.io" .
 
 <https://bio.tools/pyunixmd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0176,
         edam:topic_3047,
@@ -393098,8 +414080,29 @@ This involves extraction of parameters or meta-data related to blinks, fixations
         "Windows" ;
     sc:url "https://github.com/skmin-lab/unixmd" .
 
+<https://bio.tools/pyvhr> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0769,
+        edam:topic_2269,
+        edam:topic_3382 ;
+    sc:citation <https://doi.org/10.7717/PEERJ-CS.929>,
+        "pmcid:PMC9044207",
+        "pubmed:35494872" ;
+    sc:description "A Python framework for remote photoplethysmography." ;
+    sc:featureList edam:operation_3695,
+        edam:operation_3891,
+        edam:operation_3907 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "pyVHR" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://phuselab.github.io/pyVHR/" .
+
 <https://bio.tools/pyviko> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0622,
@@ -393119,7 +414122,7 @@ This involves extraction of parameters or meta-data related to blinks, fixations
     biotools:primaryContact "Louis J. Taylor" .
 
 <https://bio.tools/pyvisa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0176,
         edam:topic_3277,
         edam:topic_3382 ;
@@ -393135,7 +414138,7 @@ Rare event methods applied to molecular simulations are growing in popularity, a
     sc:url "https://pyvisa.readthedocs.io/en/latest/" .
 
 <https://bio.tools/pyvolve> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3293,
@@ -393152,7 +414155,7 @@ Rare event methods applied to molecular simulations are growing in popularity, a
     sc:url "https://github.com/sjspielman/pyvolve" .
 
 <https://bio.tools/pywater> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0078,
@@ -393169,7 +414172,7 @@ Rare event methods applied to molecular simulations are growing in popularity, a
     sc:url "https://github.com/hiteshpatel379/PyWATER" .
 
 <https://bio.tools/pyxas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0593,
         edam:topic_2828,
         edam:topic_3452 ;
@@ -393185,7 +414188,7 @@ PyXAS is a python library for fast 2D/3D XANES analysis with graphic user interf
     sc:url "https://github.com/gmysage/pyxas" .
 
 <https://bio.tools/pyxlinkviewer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3382,
         edam:topic_3520,
@@ -393204,8 +414207,28 @@ PyXlinkViewer is a cross-platform plugin for the widely-used PyMOL molecular gra
     sc:name "PyXlinkViewer" ;
     sc:url "https://github.com/BobSchiffrin/PyXlinkViewer" .
 
+<https://bio.tools/pyzebrascope> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0621,
+        edam:topic_3304,
+        edam:topic_3382,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.3389/FCELL.2022.875044>,
+        "pmcid:PMC9161555",
+        "pubmed:35663407" ;
+    sc:description "An Open-Source Platform for Brain-Wide Neural Activity Imaging in Zebrafish." ;
+    sc:featureList edam:operation_3443 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "PyZebrascope" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/KawashimaLab/PyZebraScope_public" .
+
 <https://bio.tools/pzlast> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3174,
@@ -393225,7 +414248,7 @@ PyXlinkViewer is a cross-platform plugin for the widely-used PyMOL molecular gra
     sc:url "https://pzlast.riken.jp/meta" .
 
 <https://bio.tools/pzres-net> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3382,
         edam:topic_3474 ;
     sc:citation <https://doi.org/10.1109/TIP.2020.3044214>,
@@ -393237,7 +414260,7 @@ PyXlinkViewer is a cross-platform plugin for the widely-used PyMOL molecular gra
     sc:url "https://github.com/zbzhzhy/PZRes-Net" .
 
 <https://bio.tools/q> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3169,
         edam:topic_3176 ;
@@ -393251,7 +414274,7 @@ PyXlinkViewer is a cross-platform plugin for the widely-used PyMOL molecular gra
     sc:url "http://charite.github.io/Q/" .
 
 <https://bio.tools/q-nexus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0122,
         edam:topic_3512,
@@ -393269,8 +414292,31 @@ PyXlinkViewer is a cross-platform plugin for the widely-used PyMOL molecular gra
     sc:url "http://charite.github.io/Q/" ;
     biotools:primaryContact "Peter Hansen" .
 
+<https://bio.tools/q-omics> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Desktop application" ;
+    sc:applicationSubCategory edam:topic_0622,
+        edam:topic_2640,
+        edam:topic_3170,
+        edam:topic_3360,
+        edam:topic_3473 ;
+    sc:citation <https://doi.org/10.14348/MOLCELLS.2021.0169>,
+        "pmcid:PMC8627836",
+        "pubmed:34819397" ;
+    sc:description "Smart Software for Assisting Oncology and Cancer Research." ;
+    sc:featureList edam:operation_0224,
+        edam:operation_2940,
+        edam:operation_2943,
+        edam:operation_3503 ;
+    sc:isAccessibleForFree true ;
+    sc:name "Q-omics" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://qomics.sookmyung.ac.kr" .
+
 <https://bio.tools/q1d> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_3071,
@@ -393285,7 +414331,7 @@ PyXlinkViewer is a cross-platform plugin for the widely-used PyMOL molecular gra
     sc:url "https://moldis.tifrh.res.in/data/rmq1d" .
 
 <https://bio.tools/q2-feature-classifier> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0637,
         edam:topic_3168,
@@ -393305,7 +414351,7 @@ This is a QIIME 2 plugin. For details on QIIME 2, see https://qiime2.org""" ;
     sc:url "https://github.com/qiime2/q2-feature-classifier" .
 
 <https://bio.tools/q2-sample-classifier> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3174,
         edam:topic_3474,
         edam:topic_3697 ;
@@ -393320,14 +414366,14 @@ This is a QIIME 2 plugin. For details on QIIME 2, see https://qiime2.org""" ;
 
 <https://bio.tools/q2_itsxpress> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2975" ;
-            sc:name "Nucleic acid sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_2975" ] ;
+            sc:additionalType "http://edamontology.org/data_2975" ;
+            sc:encodingFormat "http://edamontology.org/format_2182" ;
+            sc:name "Nucleic acid sequence (raw)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2975" ;
-            sc:name "Nucleic acid sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_2975" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2975" ;
+            sc:encodingFormat "http://edamontology.org/format_2182" ;
+            sc:name "Nucleic acid sequence (raw)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3174,
         edam:topic_3697 ;
@@ -393345,7 +414391,7 @@ This is a QIIME 2 plugin. For details on QIIME 2, see https://qiime2.org""" ;
     biotools:primaryContact "Adam Rivers" .
 
 <https://bio.tools/q2lm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0602,
@@ -393362,14 +414408,14 @@ This is a QIIME 2 plugin. For details on QIIME 2, see https://qiime2.org""" ;
 
 <https://bio.tools/q4srm> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3712" ;
+            sc:name "Mass spectrometry spectra" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121 ;
@@ -393388,7 +414434,7 @@ This is a QIIME 2 plugin. For details on QIIME 2, see https://qiime2.org""" ;
     sc:url "https://github.com/PNNL-Comp-Mass-Spec/Q4SRM" .
 
 <https://bio.tools/qTorch> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3855 ;
     sc:citation <https://doi.org/10.1371/journal.pone.0208510>,
@@ -393409,7 +414455,7 @@ This is a QIIME 2 plugin. For details on QIIME 2, see https://qiime2.org""" ;
         "S. Fried" .
 
 <https://bio.tools/qa-recombineit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -393431,7 +414477,7 @@ This is a QIIME 2 plugin. For details on QIIME 2, see https://qiime2.org""" ;
     biotools:primaryContact "Marcin Pawlowski" .
 
 <https://bio.tools/qaffp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0602,
         edam:topic_2640,
@@ -393448,7 +414494,7 @@ To generate the results in our paper run run_QAFFP.py as indicated in the file l
     sc:url "https://github.com/isidroc/QAFFP_regression" .
 
 <https://bio.tools/qalign> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0097,
         edam:topic_3170,
@@ -393468,7 +414514,7 @@ QAlign is a tool to apply quantization for nanopore long reads.""" ;
     sc:url "https://github.com/joshidhaivat/QAlign.git" .
 
 <https://bio.tools/qalma> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_3384 ;
     sc:citation <https://doi.org/10.1016/j.softx.2018.03.003> ;
@@ -393485,7 +414531,7 @@ QAlign is a tool to apply quantization for nanopore long reads.""" ;
     biotools:primaryContact "Georgios Kalantzis" .
 
 <https://bio.tools/qap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_0769,
         edam:topic_0781,
@@ -393505,7 +414551,7 @@ QAP (Quasispecies Analysis Package) is an integrated software to analyze viral q
     sc:url "https://github.com/mingjiewang/qap/" .
 
 <https://bio.tools/qapa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0199,
@@ -393523,7 +414569,7 @@ QAP (Quasispecies Analysis Package) is an integrated software to analyze viral q
     biotools:primaryContact "Benjamin J. Blencowe" .
 
 <https://bio.tools/qarip> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -393543,8 +414589,21 @@ QAP (Quasispecies Analysis Package) is an integrated software to analyze viral q
     sc:url "http://webclu.bio.wzw.tum.de/qarip/" ;
     biotools:primaryContact "D. Frishman" .
 
+<https://bio.tools/qaspro> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:description "Quality Assessment of Protein Structure" ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "qaspro" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/qaspro/index.php> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/qaspro/index.php" .
+
 <https://bio.tools/qav-pet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -393566,10 +414625,10 @@ QAP (Quasispecies Analysis Package) is an integrated software to analyze viral q
 
 <https://bio.tools/qax> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_3987" ;
+            sc:name "Sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:description """Qiime2 artifacts are structured compressed archives containing a dataset (e.g., FASTQ reads, representative sequences in FASTA format, a phylogenetic tree in Newick format, etc.) and an exhaustive set of metadata (including the command that generated it, information on the execution environment, citations on the used software, and all the metadata of the artifacts used to produce it).
 
@@ -393586,7 +414645,7 @@ While artifacts can improve the shareability and reproducibility of Qiime workfl
     biotools:primaryContact "Andrea Telatin" .
 
 <https://bio.tools/qbed> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_0798,
         edam:topic_3169,
@@ -393603,7 +414662,7 @@ Transposon calling cards is a genomic assay for identifying transcription factor
     sc:url "http://epigenomegateway.wustl.edu/browser" .
 
 <https://bio.tools/qbioimages> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_3382,
         edam:topic_3383,
@@ -393620,7 +414679,7 @@ Transposon calling cards is a genomic assay for identifying transcription factor
         "Tytus Bernas" .
 
 <https://bio.tools/qc-chain> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0080,
@@ -393635,7 +414694,7 @@ Transposon calling cards is a genomic assay for identifying transcription factor
     sc:url "http://computationalbioenergy.org/qc-chain.html" .
 
 <https://bio.tools/qc3c> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library",
         "Workflow" ;
@@ -393657,13 +414716,13 @@ The primary aim of qc3C is to infer the proportion of "signal" within a Hi-C seq
     sc:url "https://github.com/cerebis/qc3C" .
 
 <https://bio.tools/qcGenomics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "QC Genomics is a public resource providing a central access to the largest collection of genomic data. It allows scientists to browse, visualize, compare, and analyze thousands of publicly available genomic data sets." ;
     sc:name "qcGenomics" ;
     sc:url "http://ngs-qc.org/qcgenomics/" .
 
 <https://bio.tools/qcalculator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3512 ;
@@ -393676,7 +414735,7 @@ The primary aim of qc3C is to infer the proportion of "signal" within a Hi-C seq
     sc:url "http://www.gene-quantification.de/download.html#qcalculator" .
 
 <https://bio.tools/qcall> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0622 ;
@@ -393689,7 +414748,7 @@ The primary aim of qc3C is to infer the proportion of "signal" within a Hi-C seq
     biotools:primaryContact "Richard Durbin" .
 
 <https://bio.tools/qcanvas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3316 ;
     sc:citation <https://doi.org/10.5808/GI.2012.10.4.263> ;
@@ -393702,7 +414761,7 @@ The primary aim of qc3C is to infer the proportion of "signal" within a Hi-C seq
     sc:url "http://compbio.sookmyung.ac.kr/~qcanvas/" .
 
 <https://bio.tools/qcewas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3517,
@@ -393719,7 +414778,7 @@ The primary aim of qc3C is to infer the proportion of "signal" within a Hi-C seq
     biotools:primaryContact "Ilja Nolte" .
 
 <https://bio.tools/qcgwas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3053,
         edam:topic_3168,
@@ -393737,7 +414796,7 @@ The primary aim of qc3C is to infer the proportion of "signal" within a Hi-C seq
     biotools:primaryContact "Peter J. van der Most" .
 
 <https://bio.tools/qcloud2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -393752,7 +414811,7 @@ The primary aim of qc3C is to infer the proportion of "signal" within a Hi-C seq
     sc:url "https://qcloud2.crg.eu/login" .
 
 <https://bio.tools/qcluster> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0196 ;
@@ -393771,14 +414830,14 @@ The primary aim of qc3C is to infer the proportion of "signal" within a Hi-C seq
 
 <https://bio.tools/qcmetrics> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3108" ;
-            sc:name "Experimental measurement" ;
-            sc:sameAs "http://edamontology.org/data_3108" ] ;
+            sc:additionalType "http://edamontology.org/data_3108" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "Experimental measurement" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_3508" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0091,
@@ -393805,7 +414864,7 @@ The primary aim of qc3C is to infer the proportion of "signal" within a Hi-C seq
     biotools:primaryContact "Laurent Gatto" .
 
 <https://bio.tools/qcquan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
         edam:topic_0769,
@@ -393823,7 +414882,7 @@ QCQuan is for "separating the wheat from the chaff", i.e. quickly assessing whet
     sc:url "http://qcquan.net" .
 
 <https://bio.tools/qcs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_2814 ;
@@ -393840,7 +414899,7 @@ QCQuan is for "separating the wheat from the chaff", i.e. quickly assessing whet
     sc:url "http://prodata.swmed.edu/QCS/" .
 
 <https://bio.tools/qcssmdhomo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_2269,
         edam:topic_3393 ;
@@ -393853,7 +414912,7 @@ QCQuan is for "separating the wheat from the chaff", i.e. quickly assessing whet
     sc:url "https://github.com/Karena6688/qcSSMDhomo" .
 
 <https://bio.tools/qctool> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3517 ;
     sc:description "Basic quality control of gwas datasets. Compute per-sample and per-SNP summary statistics for a cohort, and use these to filter out samples and SNPs (either by removing them from the files or by writing exclusion lists). It can also be used to perform various subsetting and merging operations, and to manipulate sample information in preparation for association testing." ;
@@ -393866,7 +414925,7 @@ QCQuan is for "separating the wheat from the chaff", i.e. quickly assessing whet
     sc:url "http://www.well.ox.ac.uk/~gav/qctool/#overview" .
 
 <https://bio.tools/qcut> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2259,
@@ -393884,14 +414943,14 @@ QCQuan is for "separating the wheat from the chaff", i.e. quickly assessing whet
 
 <https://bio.tools/qdb> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3110" ;
-            sc:name "Raw microarray data" ;
-            sc:sameAs "http://edamontology.org/data_3110" ] ;
+            sc:additionalType "http://edamontology.org/data_3110" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Raw microarray data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1772" ;
-            sc:name "Score" ;
-            sc:sameAs "http://edamontology.org/data_1772" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1772" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Score" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btm387> ;
@@ -393906,7 +414965,7 @@ QCQuan is for "separating the wheat from the chaff", i.e. quickly assessing whet
     sc:url "http://bioinformatics.intec.ugent.be/kmarchal/Supplementary_Information_Dhollander_2007/index.html" .
 
 <https://bio.tools/qdecr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3305,
         edam:topic_3384,
@@ -393923,7 +414982,7 @@ QCQuan is for "separating the wheat from the chaff", i.e. quickly assessing whet
     biotools:primaryContact "Sander Lamballais" .
 
 <https://bio.tools/qdeep> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_2814,
         edam:topic_3474 ;
@@ -393939,10 +414998,10 @@ Protein model quality estimation, in many ways, informs protein structure predic
 
 <https://bio.tools/qdistance> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein structure" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0102 ;
@@ -393961,7 +415020,7 @@ Protein model quality estimation, in many ways, informs protein structure predic
     sc:url "http://yanglab.nankai.edu.cn/QDistance" .
 
 <https://bio.tools/qdnaseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3168 ;
@@ -393981,7 +415040,7 @@ Protein model quality estimation, in many ways, informs protein structure predic
     biotools:primaryContact <http://orcid.org/0000-0001-6762-2582> .
 
 <https://bio.tools/qdrip> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0203,
         edam:topic_0654,
@@ -394000,7 +415059,7 @@ R-loops are dynamic, co-transcriptional nucleic acid structures that facilitate
     sc:url "https://github.com/cimprichlab/crossley_et_al_2019" .
 
 <https://bio.tools/qfaddpy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
@@ -394018,7 +415077,7 @@ R-loops are dynamic, co-transcriptional nucleic acid structures that facilitate
     biotools:primaryContact <https://orcid.org/0000-0003-0753-4294> .
 
 <https://bio.tools/qfam> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3517 ;
     sc:description "A part of PLINK as a somewhat ad-hoc procedure to perform family-based tests of association with quantitative phenotypes." ;
@@ -394032,7 +415091,7 @@ R-loops are dynamic, co-transcriptional nucleic acid structures that facilitate
     sc:url "https://www.cog-genomics.org/plink/1.9/fam_assoc" .
 
 <https://bio.tools/qfit_3> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0176,
         edam:topic_0611,
@@ -394053,7 +415112,7 @@ Electron density maps obtained from high-resolution X-ray diffraction data are a
     sc:url "https://github.com/ExcitedStates/qfit-3.0" .
 
 <https://bio.tools/qgene> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3053 ;
@@ -394070,7 +415129,7 @@ Electron density maps obtained from high-resolution X-ray diffraction data are a
     sc:url "http://www.qgene.org/" .
 
 <https://bio.tools/qgg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0199,
         edam:topic_0602,
@@ -394095,7 +415154,7 @@ The qgg package was developed based on the hypothesis that certain regions on th
     sc:url "http://psoerensen.github.io/qgg" .
 
 <https://bio.tools/qgrid> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0123 ;
@@ -394114,7 +415173,7 @@ The qgg package was developed based on the hypothesis that certain regions on th
     biotools:primaryContact "GitHub Issues" .
 
 <https://bio.tools/qgrs-h_predictor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0659,
@@ -394136,7 +415195,7 @@ The qgg package was developed based on the hypothesis that certain regions on th
     biotools:primaryContact "Dr. Paramjeet Bagga" .
 
 <https://bio.tools/qgrs_mapper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0157,
@@ -394160,7 +415219,7 @@ The qgg package was developed based on the hypothesis that certain regions on th
         "Paramjeet Bagga" .
 
 <https://bio.tools/qgs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_2885,
         edam:topic_3055,
@@ -394182,7 +415241,7 @@ QGS is a computer program to create genetic variables from SNP data. For every i
     sc:url "https://github.com/machine2learn/QGS" .
 
 <https://bio.tools/qiber3d> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description """Qiber3D is an open-source software package for the morphometric quantification of networks from 3D image stacks.
 Qiber3D combines the required tools for a complete analytical workflow, from the raw image to final measured values.""" ;
     sc:name "Qiber3D" ;
@@ -394191,7 +415250,7 @@ Qiber3D combines the required tools for a complete analytical workflow, from the
     sc:url "https://github.com/theia-dev/Qiber3D" .
 
 <https://bio.tools/qifp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3360,
         edam:topic_3384,
@@ -394208,7 +415267,7 @@ Qiber3D combines the required tools for a complete analytical workflow, from the
     sc:url "https://qifp.stanford.edu/qifp/" .
 
 <https://bio.tools/qiime> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3070 ;
     sc:citation <https://doi.org/10.1038/nmeth.f.303> ;
@@ -394224,7 +415283,7 @@ Qiber3D combines the required tools for a complete analytical workflow, from the
     biotools:primaryContact "Australia" .
 
 <https://bio.tools/qiime2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_3174,
@@ -394243,8 +415302,31 @@ Qiber3D combines the required tools for a complete analytical workflow, from the
         <https://docs.qiime2.org/2021.4/tutorials/> ;
     sc:url "https://qiime2.org/" .
 
+<https://bio.tools/qlattice> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Plug-in" ;
+    sc:applicationSubCategory edam:topic_0121,
+        edam:topic_0602,
+        edam:topic_3172,
+        edam:topic_3360,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC405>,
+        "pmcid:PMC9344843",
+        "pubmed:35731214" ;
+    sc:description "Identifying interactions in omics data for clinical biomarker discovery using symbolic regression." ;
+    sc:featureList edam:operation_3557,
+        edam:operation_3659,
+        edam:operation_3891 ;
+    sc:isAccessibleForFree true ;
+    sc:license "CC-BY-NC-ND-4.0" ;
+    sc:name "QLattice" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/abzu-ai/QLattice-clinical-omics" .
+
 <https://bio.tools/qmaker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0621,
         edam:topic_3293 ;
@@ -394260,7 +415342,7 @@ Amino acid substitution models play a crucial role in phylogenetic analyses. Max
     sc:url "http://www.iqtree.org/#download" .
 
 <https://bio.tools/qmcpack> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0593,
         edam:topic_0769,
         edam:topic_3314,
@@ -394276,7 +415358,7 @@ Effective core potentials (pseudopotentials) in formats suitable for QMCPACK and
     sc:url "https://qmcpack.org" .
 
 <https://bio.tools/qmean> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_2815,
@@ -394298,7 +415380,7 @@ Effective core potentials (pseudopotentials) in formats suitable for QMCPACK and
     biotools:primaryContact "Gabriel Studer" .
 
 <https://bio.tools/qmgr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0622,
         edam:topic_3500 ;
@@ -394319,7 +415401,7 @@ please choose... Typical vertebrate arrangement Typical invertebrate arrangement
     sc:url "http://qmgr.hnnu.edu.cn/" .
 
 <https://bio.tools/qmin> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0632,
         edam:topic_3314,
@@ -394340,7 +415422,7 @@ please choose... Typical vertebrate arrangement Typical invertebrate arrangement
     sc:url "http://apps.cprm.gov.br/qmin/" .
 
 <https://bio.tools/qmlgalaxyportal> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3071,
@@ -394356,7 +415438,7 @@ please choose... Typical vertebrate arrangement Typical invertebrate arrangement
     sc:url "https://github.com/Tarostar/QMLGalaxyPortal" .
 
 <https://bio.tools/qmmm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_3047,
         edam:topic_3306 ;
@@ -394371,7 +415453,7 @@ please choose... Typical vertebrate arrangement Typical invertebrate arrangement
     biotools:primaryContact "Marcelo C R Melo" .
 
 <https://bio.tools/qmol> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0092,
@@ -394387,7 +415469,7 @@ please choose... Typical vertebrate arrangement Typical invertebrate arrangement
     sc:url "http://www.ccl.net/cca/software/MS-WIN95-NT/qmol/index.shtml" .
 
 <https://bio.tools/qmrlfs-finder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0097,
@@ -394410,7 +415492,7 @@ please choose... Typical vertebrate arrangement Typical invertebrate arrangement
         "Vladimir Kuznetsov" .
 
 <https://bio.tools/qmsat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_3517,
         edam:topic_3572 ;
@@ -394425,7 +415507,7 @@ please choose... Typical vertebrate arrangement Typical invertebrate arrangement
     sc:url "http://qmsat.sourceforge.net" .
 
 <https://bio.tools/qmsim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0625,
@@ -394441,7 +415523,7 @@ please choose... Typical vertebrate arrangement Typical invertebrate arrangement
     sc:url "http://www.aps.uoguelph.ca/~msargol/qmsim/" .
 
 <https://bio.tools/qnet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3293,
@@ -394457,7 +415539,7 @@ please choose... Typical vertebrate arrangement Typical invertebrate arrangement
     sc:url "http://www.uea.ac.uk/computing/qnet" .
 
 <https://bio.tools/qnr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654,
@@ -394474,7 +415556,7 @@ please choose... Typical vertebrate arrangement Typical invertebrate arrangement
     sc:url "http://bioinformatics.math.chalmers.se/qnr/" .
 
 <https://bio.tools/qoma> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btl590> ;
@@ -394490,7 +415572,7 @@ please choose... Typical vertebrate arrangement Typical invertebrate arrangement
     sc:url "http://www.cise.ufl.edu/~tamer/other_files/msa.html" .
 
 <https://bio.tools/qpalma> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_3170 ;
     sc:citation "pubmed:18689821" ;
@@ -394502,7 +415584,7 @@ please choose... Typical vertebrate arrangement Typical invertebrate arrangement
     biotools:primaryContact "Gunnar Rätsch" .
 
 <https://bio.tools/qpcrnorm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3519 ;
@@ -394521,22 +415603,22 @@ please choose... Typical vertebrate arrangement Typical invertebrate arrangement
 
 <https://bio.tools/qpgraph> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3111" ;
-            sc:name "Processed microarray data" ;
-            sc:sameAs "http://edamontology.org/data_3111" ] ;
+            sc:additionalType "http://edamontology.org/data_3111" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "Processed microarray data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1772" ;
-            sc:name "Score" ;
-            sc:sameAs "http://edamontology.org/data_1772" ],
+            sc:additionalType "http://edamontology.org/data_1772" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "Score" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1669" ;
-            sc:name "P-value" ;
-            sc:sameAs "http://edamontology.org/data_1669" ],
+            sc:additionalType "http://edamontology.org/data_1669" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "P-value" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -394561,7 +415643,7 @@ please choose... Typical vertebrate arrangement Typical invertebrate arrangement
     biotools:primaryContact <http://orcid.org/0000-0003-2229-4508> .
 
 <https://bio.tools/qpms9> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654 ;
     sc:citation <https://doi.org/10.1038/srep07813> ;
@@ -394572,8 +415654,30 @@ please choose... Typical vertebrate arrangement Typical invertebrate arrangement
     sc:softwareHelp <https://github.com/mariusmni/qpms9/tree/master/qpms9> ;
     sc:url "https://code.google.com/p/qpms9/" .
 
+<https://bio.tools/qpoweredcompound2denovodrugpropmax> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0128,
+        edam:topic_0154,
+        edam:topic_0202,
+        edam:topic_3336,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1080/07391102.2021.2024450>,
+        "pubmed:35007471" ;
+    sc:description "The main programmatic workflow to identify the bio-acitivity of a compound through AI and In-Silico methods" ;
+    sc:featureList edam:operation_3899,
+        edam:operation_3927,
+        edam:operation_3938 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "QPoweredCompound2DeNovoDrugPropMax" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/bengeof/Compound2DeNovoDrugPropMax" .
+
 <https://bio.tools/qpromoters> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0749,
@@ -394589,7 +415693,7 @@ please choose... Typical vertebrate arrangement Typical invertebrate arrangement
     biotools:primaryContact <https://orcid.org/0000-0003-3523-1477> .
 
 <https://bio.tools/qprot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0121,
@@ -394602,8 +415706,31 @@ please choose... Typical vertebrate arrangement Typical invertebrate arrangement
     sc:softwareHelp <https://sourceforge.net/projects/qprot/files/qprot_v1.3.5.zip/> ;
     sc:url "http://sourceforge.net/projects/qprot/" .
 
+<https://bio.tools/qptmplants> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0121,
+        edam:topic_0154,
+        edam:topic_0601,
+        edam:topic_0780,
+        edam:topic_3068 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAB945>,
+        "pmcid:PMC8728288",
+        "pubmed:34718741" ;
+    sc:description "An integrative database of quantitative post-translational modifications in plants." ;
+    sc:featureList edam:operation_0417,
+        edam:operation_3755,
+        edam:operation_3799 ;
+    sc:isAccessibleForFree true ;
+    sc:name "qPTMplants" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://qptmplants.omicsbio.info" .
+
 <https://bio.tools/qq-snv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_2885,
@@ -394621,7 +415748,7 @@ please choose... Typical vertebrate arrangement Typical invertebrate arrangement
     biotools:primaryContact "Support" .
 
 <https://bio.tools/qrank> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0634,
@@ -394638,8 +415765,33 @@ please choose... Typical vertebrate arrangement Typical invertebrate arrangement
     sc:url "https://cran.r-project.org/web/packages/QRank/" ;
     biotools:primaryContact "Xiaoyu Song" .
 
+<https://bio.tools/qrat> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Desktop application",
+        "Script",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0091,
+        edam:topic_0203,
+        edam:topic_3519 ;
+    sc:citation "pubmed:35854213" ;
+    sc:description "qRAT is a R based standalone desktop application to automate the processing of raw Quantification Cycle (Cq) data files exported from virtually any qPCR instrument using well established and state-of-the-art statistical and graphical techniques. The purpose of this tool is to provide a comprehensive, straightforward, and easy-to-use solution for the relative quantification of RT-qPCR data that requires no programming knowledge or additional software installation." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_2238,
+        edam:operation_2409,
+        edam:operation_2495,
+        edam:operation_3223,
+        edam:operation_3799 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "qRAT - qPCR relative expression analysis tool" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://fileshare.uibk.ac.at/f/c7f80a4cb9bd45bc9ee2/?dl=1> ;
+    sc:url "https://www.uibk.ac.at/microbiology/services/qrat/" .
+
 <https://bio.tools/qrcme> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3071,
@@ -394659,7 +415811,7 @@ please choose... Typical vertebrate arrangement Typical invertebrate arrangement
         "Yun Li Statistical Genetics Group" .
 
 <https://bio.tools/qridge> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3170,
@@ -394674,7 +415826,7 @@ please choose... Typical vertebrate arrangement Typical invertebrate arrangement
     biotools:primaryContact "Xianwen Ren" .
 
 <https://bio.tools/qrisk2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3335,
         edam:topic_3422,
@@ -394695,8 +415847,31 @@ Welcome to the QRISK ® 2-2017 Web Calculator. You can use this calculator to wo
     sc:name "QRISK2" ;
     sc:url "https://qrisk.org/2017/" .
 
+<https://bio.tools/qrnastruct> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0097,
+        edam:topic_0099,
+        edam:topic_0749,
+        edam:topic_2814,
+        edam:topic_3170 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAC220>,
+        "pubmed:35390152" ;
+    sc:description "A method for extracting secondary structural features of RNA via regression with biological activity." ;
+    sc:featureList edam:operation_0278,
+        edam:operation_0337,
+        edam:operation_0502,
+        edam:operation_3659 ;
+    sc:isAccessibleForFree true ;
+    sc:license "BSD-3-Clause" ;
+    sc:name "QRNAstruct" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/gterai/QRNAstruct" .
+
 <https://bio.tools/qrqc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -394716,7 +415891,7 @@ Welcome to the QRISK ® 2-2017 Web Calculator. You can use this calculator to wo
     biotools:primaryContact "Vince Buffalo" .
 
 <https://bio.tools/qrtdesigner> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0632 ;
     sc:description "Program for designing primers for real-time quantitative PCR assays." ;
@@ -394728,8 +415903,31 @@ Welcome to the QRISK ® 2-2017 Web Calculator. You can use this calculator to wo
     sc:softwareVersion "1.2" ;
     sc:url "http://bioinfo.ut.ee/gwRTqPCR/" .
 
+<https://bio.tools/qsalignweb> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0128,
+        edam:topic_2275,
+        edam:topic_2814,
+        edam:topic_3299,
+        edam:topic_3300 ;
+    sc:citation <https://doi.org/10.3389/FMOLB.2021.787510>,
+        "pmcid:PMC8769216",
+        "pubmed:35071324" ;
+    sc:description "A Server to Predict and Analyze Protein Quaternary Structure." ;
+    sc:featureList edam:operation_0224,
+        edam:operation_0303,
+        edam:operation_0477,
+        edam:operation_3350 ;
+    sc:isAccessibleForFree true ;
+    sc:name "QSalignWeb" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://www.QSalign.org" .
+
 <https://bio.tools/qsar-co-x> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0769,
         edam:topic_2258,
@@ -394749,10 +415947,10 @@ There are two modules available in the software, i.e., 1) Model Development modu
 
 <https://bio.tools/qsbio> a sc:SoftwareApplication ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_3620" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_1317 ;
@@ -394769,7 +415967,7 @@ There are two modules available in the software, i.e., 1) Model Development modu
     biotools:primaryContact "Emmanuel Levy" .
 
 <https://bio.tools/qscop_blast> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0623,
@@ -394788,7 +415986,7 @@ There are two modules available in the software, i.e., 1) Model Development modu
     biotools:primaryContact "Contact form" .
 
 <https://bio.tools/qsdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
@@ -394811,7 +416009,7 @@ There are two modules available in the software, i.e., 1) Model Development modu
     sc:url "http://quorumpeps.ugent.be/" .
 
 <https://bio.tools/qsea> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -394833,7 +416031,7 @@ There are two modules available in the software, i.e., 1) Model Development modu
     biotools:primaryContact "Matthias Lienhard" .
 
 <https://bio.tools/qseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_3169,
@@ -394850,7 +416048,7 @@ There are two modules available in the software, i.e., 1) Model Development modu
     biotools:primaryContact "Contact" .
 
 <https://bio.tools/qseq2fastq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3071,
         edam:topic_3168 ;
@@ -394863,7 +416061,7 @@ There are two modules available in the software, i.e., 1) Model Development modu
     sc:url "http://www.splashground.de/~andy/programs/qseq2fastq-andy/README.html" .
 
 <https://bio.tools/qshgm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_2815,
@@ -394886,7 +416084,7 @@ There are two modules available in the software, i.e., 1) Model Development modu
     biotools:primaryContact "Jianjun Qiao" .
 
 <https://bio.tools/qsiprep> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0219,
         edam:topic_0769,
         edam:topic_3304,
@@ -394906,7 +416104,7 @@ This repository contains the code and data used to process the reconstructions a
     sc:url "https://pennlinc.github.io/qsiprep_paper/" .
 
 <https://bio.tools/qsmxt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3316,
@@ -394925,7 +416123,7 @@ This repository contains the code and data used to process the reconstructions a
     biotools:primaryContact "Ashley Wilton Stewart" .
 
 <https://bio.tools/qsne> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3934 ;
     sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAA637>,
@@ -394939,7 +416137,7 @@ Non-parametric dimensionality reduction techniques, such as t-distributed stocha
     sc:url "https://bitbucket.org/anthakki/qsne/" .
 
 <https://bio.tools/qsr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_2229,
@@ -394955,7 +416153,7 @@ Non-parametric dimensionality reduction techniques, such as t-distributed stocha
     biotools:primaryContact "I. I. Cissé" .
 
 <https://bio.tools/qsra> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196 ;
     sc:citation "pubmed:19239711" ;
@@ -394970,7 +416168,7 @@ Non-parametric dimensionality reduction techniques, such as t-distributed stocha
     biotools:primaryContact "Mockler Lab" .
 
 <https://bio.tools/qsurface> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_2259,
@@ -394989,7 +416187,7 @@ Non-parametric dimensionality reduction techniques, such as t-distributed stocha
     biotools:primaryContact "Sukjoon YoonEmail author" .
 
 <https://bio.tools/qt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0176,
         edam:topic_3306 ;
@@ -395004,7 +416202,7 @@ Non-parametric dimensionality reduction techniques, such as t-distributed stocha
     sc:url "https://github.com/rglez/QT" .
 
 <https://bio.tools/qt-clustering-euclidean-distance-jackknife-correlation> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3053,
         edam:topic_3303,
@@ -395023,8 +416221,28 @@ Non-parametric dimensionality reduction techniques, such as t-distributed stocha
     sc:url "https://www.mathworks.com/matlabcentral/fileexchange/26432-qt-clustering-using-euclidean-distance-jackknife-correlation" ;
     biotools:primaryContact "Misha Koshelev" .
 
+<https://bio.tools/qt-gild> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0084,
+        edam:topic_0194,
+        edam:topic_0218,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1101/2021.11.03.467204> ;
+    sc:description "Quartet based gene tree imputation using deep learning improves phylogenomic analyses despite missing data." ;
+    sc:featureList edam:operation_0553,
+        edam:operation_3557,
+        edam:operation_3947 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Apache-2.0" ;
+    sc:name "QT-GILD" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/pythonLoader/QT-GILD" .
+
 <https://bio.tools/qtQDA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2640,
         edam:topic_3170 ;
@@ -395039,7 +416257,7 @@ Non-parametric dimensionality reduction techniques, such as t-distributed stocha
     sc:url "https://github.com/goknurginer/qtQDA" .
 
 <https://bio.tools/qtdt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3517 ;
     sc:citation <https://doi.org/10.1086/302698> ;
@@ -395054,7 +416272,7 @@ Non-parametric dimensionality reduction techniques, such as t-distributed stocha
     sc:url "http://csg.sph.umich.edu/abecasis/qtdt/" .
 
 <https://bio.tools/qteller> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0203,
@@ -395079,7 +416297,7 @@ Non-parametric dimensionality reduction techniques, such as t-distributed stocha
     sc:url "https://qteller.maizegdb.org/" .
 
 <https://bio.tools/qtl-all> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_2269,
@@ -395096,7 +416314,7 @@ Non-parametric dimensionality reduction techniques, such as t-distributed stocha
     sc:url "https://watson.hgen.pitt.edu/register/" .
 
 <https://bio.tools/qtl2pleio> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3517 ;
@@ -395118,7 +416336,7 @@ Non-parametric dimensionality reduction techniques, such as t-distributed stocha
     biotools:primaryContact <https://orcid.org/0000-0002-4914-6671> .
 
 <https://bio.tools/qtlbim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3053 ;
@@ -395134,7 +416352,7 @@ Non-parametric dimensionality reduction techniques, such as t-distributed stocha
     sc:url "http://pages.stat.wisc.edu/~yandell/qtl/software/qtlbim/" .
 
 <https://bio.tools/qtlizer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0203,
         edam:topic_0625,
@@ -395156,7 +416374,7 @@ This R package provides access to the Qtlizer web server. Qtlizer annotates list
     sc:url "https://bioconductor.org/packages/release/bioc/html/Qtlizer.html" .
 
 <https://bio.tools/qtlmapper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0602,
@@ -395171,7 +416389,7 @@ This R package provides access to the Qtlizer web server. Qtlizer annotates list
     sc:url "http://ibi.zju.edu.cn/software/qtlmapper/index.htm" .
 
 <https://bio.tools/qtlnetwork> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3053 ;
@@ -395190,7 +416408,7 @@ This R package provides access to the Qtlizer web server. Qtlizer annotates list
     sc:url "http://ibi.zju.edu.cn/software/qtlnetwork/" .
 
 <https://bio.tools/qtltools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0203,
@@ -395208,7 +416426,7 @@ This R package provides access to the Qtlizer web server. Qtlizer annotates list
         "Olivier Delaneau" .
 
 <https://bio.tools/qtm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0089 ;
     sc:citation <https://doi.org/10.1186/s12859-018-2165-7> ;
@@ -395223,7 +416441,7 @@ This R package provides access to the Qtlizer web server. Qtlizer annotates list
     biotools:primaryContact "Richard Finkers" .
 
 <https://bio.tools/qtmodel> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3053,
@@ -395241,7 +416459,7 @@ This R package provides access to the Qtlizer web server. Qtlizer annotates list
     sc:url "http://ibi.zju.edu.cn/software/qtmodel/index.html" .
 
 <https://bio.tools/quacrs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0099,
@@ -395259,7 +416477,7 @@ This R package provides access to the Qtlizer web server. Qtlizer annotates list
     sc:url "http://bioserv.mps.ohio-state.edu/QuaCRS/" .
 
 <https://bio.tools/quadfinder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0622,
@@ -395279,7 +416497,7 @@ This R package provides access to the Qtlizer web server. Qtlizer annotates list
     biotools:primaryContact "GitHub Issues" .
 
 <https://bio.tools/quadgt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2885 ;
     sc:citation <https://doi.org/10.1186/1471-2105-14-S5-S3> ;
@@ -395296,7 +416514,7 @@ This R package provides access to the Qtlizer web server. Qtlizer annotates list
     sc:url "http://www.iro.umontreal.ca/%7Ecsuros/quadgt/" .
 
 <https://bio.tools/quadmutnetex> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0199,
         edam:topic_0749,
@@ -395313,7 +416531,7 @@ Cancer is caused by genetic mutations, but not all somatic mutations in human DN
     sc:url "https://github.com/bokhariy/QuaDMutNetEx" .
 
 <https://bio.tools/quadruplex> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0154,
@@ -395335,7 +416553,7 @@ Cancer is caused by genetic mutations, but not all somatic mutations in human DN
     biotools:primaryContact "Danzhou Yang" .
 
 <https://bio.tools/quake> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0622,
@@ -395358,14 +416576,14 @@ Cancer is caused by genetic mutations, but not all somatic mutations in human DN
 
 <https://bio.tools/qualifier> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3108" ;
-            sc:name "Experimental measurement" ;
-            sc:sameAs "http://edamontology.org/data_3108" ] ;
+            sc:additionalType "http://edamontology.org/data_3108" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "Experimental measurement" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -395386,7 +416604,7 @@ Cancer is caused by genetic mutations, but not all somatic mutations in human DN
     biotools:primaryContact "Mike Jiang" .
 
 <https://bio.tools/qualimap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3572 ;
     sc:citation "pubmed:22914218" ;
@@ -395401,7 +416619,7 @@ Cancer is caused by genetic mutations, but not all somatic mutations in human DN
     biotools:primaryContact "QualiMap Forum" .
 
 <https://bio.tools/quality> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3315,
@@ -395418,7 +416636,7 @@ Cancer is caused by genetic mutations, but not all somatic mutations in human DN
     sc:url "http://indra.mullins.microbiol.washington.edu/quality/" .
 
 <https://bio.tools/quality_assessment> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654,
@@ -395436,7 +416654,7 @@ Cancer is caused by genetic mutations, but not all somatic mutations in human DN
     sc:url "http://sourceforge.net/projects/qualevaluato/" .
 
 <https://bio.tools/qualitysnpng> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0199,
@@ -395459,18 +416677,18 @@ Cancer is caused by genetic mutations, but not all somatic mutations in human DN
 
 <https://bio.tools/qualtofastq> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3168,
@@ -395489,7 +416707,7 @@ Cancer is caused by genetic mutations, but not all somatic mutations in human DN
     biotools:primaryContact "Galaxy Support Team" .
 
 <https://bio.tools/quandensertriqler> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
         edam:topic_0154,
@@ -395522,34 +416740,34 @@ An installer for all major platforms (Windows, OS X, Ubuntu, etc.) can be found
 
 <https://bio.tools/quant> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ],
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_3468" ;
+            sc:name "Peptide identification" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ],
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_3468" ;
+            sc:name "Peptide identification" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ],
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3652" ;
+            sc:name "Mass spectrometry spectra" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ] ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3652" ;
+            sc:name "Mass spectrometry spectra" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ],
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_3468" ;
+            sc:name "Expression data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ],
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_3603" ;
+            sc:name "Expression data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3603" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -395566,7 +416784,7 @@ An installer for all major platforms (Windows, OS X, Ubuntu, etc.) can be found
     sc:url "http://sourceforge.net/projects/protms" .
 
 <https://bio.tools/quantest> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0097,
@@ -395581,14 +416799,14 @@ An installer for all major platforms (Windows, OS X, Ubuntu, etc.) can be found
 
 <https://bio.tools/quantgenius> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3108" ;
-            sc:name "Experimental measurement" ;
-            sc:sameAs "http://edamontology.org/data_3108" ] ;
+            sc:additionalType "http://edamontology.org/data_3108" ;
+            sc:encodingFormat "http://edamontology.org/format_1964" ;
+            sc:name "Experimental measurement" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Gene expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_1964" ;
+            sc:name "Gene expression data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0091,
@@ -395620,7 +416838,7 @@ An installer for all major platforms (Windows, OS X, Ubuntu, etc.) can be found
         "Miha Svalina" .
 
 <https://bio.tools/quantifly> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3053,
         edam:topic_3071,
@@ -395636,7 +416854,7 @@ An installer for all major platforms (Windows, OS X, Ubuntu, etc.) can be found
     sc:url "https://github.com/dwaithe/quantifly" .
 
 <https://bio.tools/quantifypolarity> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2229,
         edam:topic_3315,
@@ -395653,7 +416871,7 @@ QuantifyPolarity, is a free software, capable of quantifying planar polarity and
     sc:url "https://github.com/QuantifyPolarity/QuantifyPolarity" .
 
 <https://bio.tools/quantiprot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -395672,7 +416890,7 @@ QuantifyPolarity, is a free software, capable of quantifying planar polarity and
     biotools:primaryContact "Witold Dyrka" .
 
 <https://bio.tools/quantisnp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2885,
         edam:topic_3053 ;
@@ -395685,16 +416903,8 @@ QuantifyPolarity, is a free software, capable of quantifying planar polarity and
     sc:softwareHelp <https://sites.google.com/site/quantisnp/howto> ;
     sc:url "https://sites.google.com/site/quantisnp/home" .
 
-<https://bio.tools/quantitative_proteomics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
-    sc:additionalType "Bioinformatics portal" ;
-    sc:applicationSubCategory edam:topic_2229 ;
-    sc:description "CD Genomics provides quantitative proteomics data analysis to help you explore the data information obtained by different protein quantification techniques" ;
-    sc:name "Quantitative Proteomics" ;
-    sc:url "https://bioinfo.cd-genomics.com/quantitative-proteomics.html" .
-
 <https://bio.tools/quantitativetox> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3382,
@@ -395715,7 +416925,7 @@ QuantifyPolarity, is a free software, capable of quantifying planar polarity and
     sc:url "https://github.com/Abdulk084/QuantitativeTox" .
 
 <https://bio.tools/quanto> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3053,
@@ -395729,7 +416939,7 @@ QuantifyPolarity, is a free software, capable of quantifying planar polarity and
     sc:url "http://biostats.usc.edu/Quanto.html" .
 
 <https://bio.tools/quantpipe> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
         edam:topic_0769,
@@ -395746,7 +416956,7 @@ Contribute to tachengxmu/QuantPipe development by creating an account on GitHub.
     sc:url "https://github.com/tachengxmu/QuantPipe/releases" .
 
 <https://bio.tools/quantproreloaded> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2640 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btq443> ;
@@ -395761,7 +416971,7 @@ Contribute to tachengxmu/QuantPipe development by creating an account on GitHub.
     sc:url "http://code.google.com/p/quantproreloaded/" .
 
 <https://bio.tools/quantro> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0080 ;
@@ -395781,7 +416991,7 @@ Contribute to tachengxmu/QuantPipe development by creating an account on GitHub.
     biotools:primaryContact <http://orcid.org/0000-0002-7858-0231> .
 
 <https://bio.tools/quantsmooth> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0080 ;
@@ -395799,7 +417009,7 @@ Contribute to tachengxmu/QuantPipe development by creating an account on GitHub.
     biotools:primaryContact "Jan Oosting" .
 
 <https://bio.tools/quanttb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0625,
         edam:topic_2885,
@@ -395821,7 +417031,7 @@ These instructions will guide you through the process of using QuantTB, so that
     sc:url "https://github.com/AbeelLab/quanttb/" .
 
 <https://bio.tools/quantworm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3053,
@@ -395843,7 +417053,7 @@ These instructions will guide you through the process of using QuantTB, so that
     biotools:primaryContact "Weiwei Zhong" .
 
 <https://bio.tools/quark> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -395861,7 +417071,7 @@ These instructions will guide you through the process of using QuantTB, so that
     sc:url "http://zhanglab.ccmb.med.umich.edu/QUARK/" .
 
 <https://bio.tools/quarray> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3360,
@@ -395882,7 +417092,7 @@ These instructions will guide you through the process of using QuantTB, so that
     biotools:primaryContact <https://orcid.org/0000-0001-8508-3754> .
 
 <https://bio.tools/quartataweb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0202,
         edam:topic_0209,
@@ -395901,7 +417111,7 @@ Data on protein-drug and protein-chemical interactions are rapidly accumulating
     sc:url "http://quartata.csb.pitt.edu" .
 
 <https://bio.tools/quarterplus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3474,
@@ -395918,7 +417128,7 @@ Data on protein-drug and protein-chemical interactions are rapidly accumulating
     biotools:primaryContact <https://orcid.org/0000-0002-7749-0314> .
 
 <https://bio.tools/quartpac> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0199,
@@ -395937,7 +417147,7 @@ Data on protein-drug and protein-chemical interactions are rapidly accumulating
     biotools:primaryContact "Gregory Ryslik" .
 
 <https://bio.tools/quasar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_2269,
@@ -395956,7 +417166,7 @@ Data on protein-drug and protein-chemical interactions are rapidly accumulating
     sc:url "https://github.com/piquelab/QuASAR" .
 
 <https://bio.tools/quaser> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0654,
@@ -395974,7 +417184,7 @@ Data on protein-drug and protein-chemical interactions are rapidly accumulating
     biotools:primaryContact <https://orcid.org/0000-0002-3026-6892> .
 
 <https://bio.tools/quasimotifinder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0160,
@@ -395992,7 +417202,7 @@ Data on protein-drug and protein-chemical interactions are rapidly accumulating
     biotools:primaryContact "Server Administrator" .
 
 <https://bio.tools/quasirecomb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0781,
@@ -396010,8 +417220,28 @@ Data on protein-drug and protein-chemical interactions are rapidly accumulating
     sc:url "https://github.com/cbg-ethz/QuasiRecomb" ;
     biotools:primaryContact "Armin Töpfer" .
 
+<https://bio.tools/quasiseq> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0769,
+        edam:topic_3168,
+        edam:topic_3382 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC313>,
+        "pubmed:35532087" ;
+    sc:description "Profiling Viral Quasispecies via Self-tuning Spectral Clustering with PacBio Long Sequencing Reads." ;
+    sc:featureList edam:operation_3198,
+        edam:operation_3432,
+        edam:operation_3629 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "QuasiSeq" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://zenodo.org/badge/latestdoi/340494542" .
+
 <https://bio.tools/quasitools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0781,
         edam:topic_3168 ;
@@ -396026,18 +417256,18 @@ Data on protein-drug and protein-chemical interactions are rapidly accumulating
 
 <https://bio.tools/quasr> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1383" ;
-            sc:name "Sequence alignment (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1383" ] ;
+            sc:additionalType "http://edamontology.org/data_1383" ;
+            sc:encodingFormat "http://edamontology.org/format_1957" ;
+            sc:name "Sequence alignment (nucleic acid)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1383" ;
-            sc:name "Sequence alignment (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1383" ],
+            sc:additionalType "http://edamontology.org/data_2012" ;
+            sc:encodingFormat "http://edamontology.org/format_3327" ;
+            sc:name "Sequence coordinates" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2012" ;
-            sc:name "Sequence coordinates" ;
-            sc:sameAs "http://edamontology.org/data_2012" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1383" ;
+            sc:encodingFormat "http://edamontology.org/format_3327" ;
+            sc:name "Sequence alignment (nucleic acid)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0769,
@@ -396064,7 +417294,7 @@ Data on protein-drug and protein-chemical interactions are rapidly accumulating
     biotools:primaryContact "Michael Stadler" .
 
 <https://bio.tools/quassi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0091,
@@ -396080,7 +417310,7 @@ Data on protein-drug and protein-chemical interactions are rapidly accumulating
     sc:url "https://code.google.com/p/quassi/" .
 
 <https://bio.tools/quast> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0196 ;
     sc:citation "pubmed:23422339" ;
@@ -396097,7 +417327,7 @@ It evaluates a quality of genome assemblies by computing various metrics and pro
     biotools:primaryContact "QUAST Support" .
 
 <https://bio.tools/quat-2l> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -396115,7 +417345,7 @@ It evaluates a quality of genome assemblies by computing various metrics and pro
     biotools:primaryContact "Xuan Xiao" .
 
 <https://bio.tools/quaternaryprod> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0602 ;
@@ -396135,7 +417365,7 @@ It evaluates a quality of genome assemblies by computing various metrics and pro
     biotools:primaryContact "Carl Tony Fakhry" .
 
 <https://bio.tools/quatgo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0082,
         edam:topic_0121,
@@ -396156,7 +417386,7 @@ Choose the subunit if the input sequence is not compelet sequence but a single c
     sc:url "http://predictor.nchu.edu.tw/QUATgo" .
 
 <https://bio.tools/qubic> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203 ;
@@ -396175,7 +417405,7 @@ Choose the subunit if the input sequence is not compelet sequence but a single c
     biotools:primaryContact "Yu Zhang" .
 
 <https://bio.tools/qubils-mas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2258,
@@ -396194,7 +417424,7 @@ Choose the subunit if the input sequence is not compelet sequence but a single c
     biotools:primaryContact "José R. Valdés-Martiní" .
 
 <https://bio.tools/qubils-midas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2258,
         edam:topic_2269 ;
@@ -396211,8 +417441,30 @@ QuBiLs-MIDAS software is for the calculation of 3D molecular descriptors based o
     sc:name "QuBiLS-MIDAS" ;
     sc:url "http://tomocomd.com/qubils-midas" .
 
+<https://bio.tools/quco> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0084,
+        edam:topic_0194,
+        edam:topic_3053,
+        edam:topic_3500 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC265>,
+        "pmcid:PMC9235488",
+        "pubmed:35758818" ;
+    sc:description "Quartet-based co-estimation of species trees and gene trees." ;
+    sc:featureList edam:operation_0544,
+        edam:operation_0547,
+        edam:operation_3947 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Apache-2.0" ;
+    sc:name "QuCo" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/maryamrabiee/quco" .
+
 <https://bio.tools/qudex-ms> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3318,
@@ -396232,7 +417484,7 @@ QuBiLs-MIDAS software is for the calculation of 3D molecular descriptors based o
     biotools:primaryContact "Joseph Salisbury" .
 
 <https://bio.tools/qudi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3077,
         edam:topic_3383 ;
@@ -396248,7 +417500,7 @@ QuBiLs-MIDAS software is for the calculation of 3D molecular descriptors based o
     sc:url "https://github.com/ElsevierSoftwareX/SOFTX-D-16-00092" .
 
 <https://bio.tools/queen> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0593 ;
     sc:citation <https://doi.org/10.1021/ja035440f> ;
@@ -396261,7 +417513,7 @@ QuBiLs-MIDAS software is for the calculation of 3D molecular descriptors based o
     sc:url "http://www.cmbi.ru.nl/software/queen/" .
 
 <https://bio.tools/query_win> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0078,
@@ -396277,7 +417529,7 @@ QuBiLs-MIDAS software is for the calculation of 3D molecular descriptors based o
     sc:url "http://pbil.univ-lyon1.fr/software/query_win.html" .
 
 <https://bio.tools/queryor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0622 ;
     sc:citation <https://doi.org/10.1186/s12859-017-1654-4> ;
@@ -396294,7 +417546,7 @@ QuBiLs-MIDAS software is for the calculation of 3D molecular descriptors based o
     biotools:primaryContact "Claudio Forcato" .
 
 <https://bio.tools/quest> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3169 ;
     sc:citation "pubmed:19160518" ;
@@ -396308,7 +417560,7 @@ QuBiLs-MIDAS software is for the calculation of 3D molecular descriptors based o
     biotools:primaryContact "Arend Sidow" .
 
 <https://bio.tools/quetal> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
@@ -396326,7 +417578,7 @@ QuBiLs-MIDAS software is for the calculation of 3D molecular descriptors based o
     sc:url "http://bioinfo-web.mpl.ird.fr/cgi-bin2/quetal/quetal.cgi" .
 
 <https://bio.tools/quickalign> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3068 ;
@@ -396339,8 +417591,31 @@ QuBiLs-MIDAS software is for the calculation of 3D molecular descriptors based o
     sc:softwareVersion "1.03" ;
     sc:url "http://bioinfweb.info/Software/QuickAlign" .
 
+<https://bio.tools/quickfigures> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Plug-in" ;
+    sc:applicationSubCategory edam:topic_0196,
+        edam:topic_3168,
+        edam:topic_3382 ;
+    sc:citation <https://doi.org/10.1371/JOURNAL.PONE.0240280>,
+        "pmcid:PMC8577749",
+        "pubmed:34752463" ;
+    sc:description "A toolkit and ImageJ PlugIn to quickly transform microscope images into scientific figures" ;
+    sc:featureList edam:operation_0292,
+        edam:operation_3096,
+        edam:operation_3359,
+        edam:operation_3436 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Apache-2.0" ;
+    sc:name "QuickFigures" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://github.com/grishkam/QuickFigures/blob/master/UserGuide/User%20Guide.md> ;
+    sc:url "https://github.com/grishkam/QuickFigures" .
+
 <https://bio.tools/quickgo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0089 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btp536> ;
@@ -396355,7 +417630,7 @@ QuBiLs-MIDAS software is for the calculation of 3D molecular descriptors based o
     sc:url "http://www.ebi.ac.uk/QuickGO/" .
 
 <https://bio.tools/quickjoin> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0084 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/bth359> ;
@@ -396370,7 +417645,7 @@ QuBiLs-MIDAS software is for the calculation of 3D molecular descriptors based o
     biotools:primaryContact "Thomas Mailund" .
 
 <https://bio.tools/quickld> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3316,
@@ -396391,7 +417666,7 @@ QuBiLs-MIDAS software is for the calculation of 3D molecular descriptors based o
     sc:url "https://github.com/pephco/quickLD" .
 
 <https://bio.tools/quicklookpdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_2275,
         edam:topic_3382 ;
@@ -396403,7 +417678,7 @@ QuBiLs-MIDAS software is for the calculation of 3D molecular descriptors based o
     sc:url "http://benporebski.github.io/CrystallographyQLPlugins/" .
 
 <https://bio.tools/quickmerge> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0625,
@@ -396422,7 +417697,7 @@ QuBiLs-MIDAS software is for the calculation of 3D molecular descriptors based o
     biotools:primaryContact <https://orcid.org/0000-0003-2414-9187> .
 
 <https://bio.tools/quickomics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -396446,8 +417721,50 @@ QuBiLs-MIDAS software is for the calculation of 3D molecular descriptors based o
     sc:name "Quickomics" ;
     sc:url "http://quickomics.bxgenomics.com" .
 
+<https://bio.tools/quickped> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0625,
+        edam:topic_0634,
+        edam:topic_3382 ;
+    sc:citation <https://doi.org/10.1186/S12859-022-04759-Y>,
+        "pmcid:PMC9175388",
+        "pubmed:35672681" ;
+    sc:description "QuickPed is an interactive web application for drawing and analysing pedigrees. A created pedigree may be saved as an image or as a text file in ped format. You may also obtain various information about the pedigree, including relatedness coefficients and verbal descriptions of relationships." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3196 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "QuickPed" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://magnusdv.shinyapps.io/quickped" .
+
+<https://bio.tools/quickpiv> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0108,
+        edam:topic_3070,
+        edam:topic_3382,
+        edam:topic_3520 ;
+    sc:citation <https://doi.org/10.1186/S12859-021-04474-0>,
+        "pmcid:PMC8642913",
+        "pubmed:34863116" ;
+    sc:description "Efficient 3D particle image velocimetry software applied to quantifying cellular migration during embryogenesis." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3446,
+        edam:operation_3458 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "quickPIV" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/Marc-3d/quickPIV" .
+
 <https://bio.tools/quickprobs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -396462,7 +417779,7 @@ QuBiLs-MIDAS software is for the calculation of 3D molecular descriptors based o
     sc:url "http://sun.aei.polsl.pl/REFRESH/index.php?page=projects&project=quickprobs&subpage=about" .
 
 <https://bio.tools/quicksnp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0199,
@@ -396476,7 +417793,7 @@ QuBiLs-MIDAS software is for the calculation of 3D molecular descriptors based o
     sc:url "http://bioinformoodics.jhmi.edu/quickSNP.pl" .
 
 <https://bio.tools/quikr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0654,
@@ -396491,7 +417808,7 @@ QuBiLs-MIDAS software is for the calculation of 3D molecular descriptors based o
     sc:url "http://sourceforge.net/projects/quikr/" .
 
 <https://bio.tools/quin> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0602 ;
@@ -396513,7 +417830,7 @@ QuBiLs-MIDAS software is for the calculation of 3D molecular descriptors based o
     biotools:primaryContact "DUYGU UCAR" .
 
 <https://bio.tools/quin-xl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0128,
@@ -396531,7 +417848,7 @@ QuBiLs-MIDAS software is for the calculation of 3D molecular descriptors based o
     sc:url "http://patternlabforproteomics.org/quinxl" .
 
 <https://bio.tools/quincunx> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0219 ;
@@ -396547,7 +417864,7 @@ The goal of quincunx is to provide programmatic access to the Polygenic Score (P
     sc:url "https://github.com/maialab/quincunx" .
 
 <https://bio.tools/quip> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation "pubmed:22904078" ;
@@ -396563,7 +417880,7 @@ The goal of quincunx is to provide programmatic access to the Polygenic Score (P
     biotools:primaryContact "Daniel C. Jones" .
 
 <https://bio.tools/quma> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0154,
@@ -396586,14 +417903,14 @@ The goal of quincunx is to provide programmatic access to the Polygenic Score (P
 
 <https://bio.tools/quod> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1916" ;
-            sc:name "Alignment" ;
-            sc:sameAs "http://edamontology.org/data_1916" ] ;
+            sc:additionalType "http://edamontology.org/data_1916" ;
+            sc:encodingFormat "http://edamontology.org/format_2333" ;
+            sc:name "Alignment" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1772" ;
-            sc:name "Score" ;
-            sc:sameAs "http://edamontology.org/data_1772" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1772" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Score" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_3307 ;
     sc:author <https://orcid.org/0000-0002-4022-8531> ;
@@ -396611,7 +417928,7 @@ The goal of quincunx is to provide programmatic access to the Polygenic Score (P
     biotools:primaryContact <https://orcid.org/0000-0002-4022-8531> .
 
 <https://bio.tools/quosa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3489 ;
     sc:description "Complete end-to-end solution for literature search and document management in the life science fields." ;
@@ -396622,7 +417939,7 @@ The goal of quincunx is to provide programmatic access to the Polygenic Score (P
     sc:url "http://www.elsevier.com/solutions/quosa" .
 
 <https://bio.tools/quovadopro> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_2229,
         edam:topic_2640,
@@ -396637,7 +417954,7 @@ Trafficking of intracellular cargo is essential to cellular function and can be
     sc:url "https://github.com/ThomasSchwarzLab/QuoVadoPro/blob/master/instructions_ReadMeFirst.docx" .
 
 <https://bio.tools/quovidi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_0621,
         edam:topic_3398,
@@ -396655,7 +417972,7 @@ QuoVidi (previously known as BioGO) is an interface to manage large (and small)
     sc:url "http://www.quovidi.xyz" .
 
 <https://bio.tools/qupath> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0634,
@@ -396676,10 +417993,10 @@ QuoVidi (previously known as BioGO) is an interface to manage large (and small)
 
 <https://bio.tools/qupe> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:encodingFormat "http://edamontology.org/format_3244" ;
+            sc:name "Mass spectrometry data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -396704,7 +418021,7 @@ QuoVidi (previously known as BioGO) is an interface to manage large (and small)
     sc:url "https://qupe.cebitec.uni-bielefeld.de" .
 
 <https://bio.tools/qurva> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -396724,18 +418041,18 @@ QuoVidi (previously known as BioGO) is an interface to manage large (and small)
 
 <https://bio.tools/qusage> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3111" ;
-            sc:name "Processed microarray data" ;
-            sc:sameAs "http://edamontology.org/data_3111" ] ;
+            sc:additionalType "http://edamontology.org/data_3111" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Processed microarray data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1669" ;
-            sc:name "P-value" ;
-            sc:sameAs "http://edamontology.org/data_1669" ],
+            sc:additionalType "http://edamontology.org/data_1669" ;
+            sc:encodingFormat "http://edamontology.org/format_3604" ;
+            sc:name "P-value" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3604" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -396758,7 +418075,7 @@ QuoVidi (previously known as BioGO) is an interface to manage large (and small)
     biotools:primaryContact "Christopher Bolen" .
 
 <https://bio.tools/qvalue> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269 ;
     sc:description "This package takes a list of p-values resulting from the simultaneous testing of many hypotheses and estimates their q-values and local FDR values. The q-value of a test measures the proportion of false positives incurred (called the false discovery rate) when that particular test is called significant." ;
@@ -396776,7 +418093,7 @@ QuoVidi (previously known as BioGO) is an interface to manage large (and small)
         "John D. Storey" .
 
 <https://bio.tools/qvz> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654,
@@ -396793,7 +418110,7 @@ QuoVidi (previously known as BioGO) is an interface to manage large (and small)
     sc:url "https://github.com/mikelhernaez/qvz" .
 
 <https://bio.tools/qwikmd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0176,
@@ -396808,7 +418125,7 @@ QuoVidi (previously known as BioGO) is an interface to manage large (and small)
     biotools:primaryContact "Contact list" .
 
 <https://bio.tools/r> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Workbench" ;
     sc:applicationSubCategory edam:topic_2269,
@@ -396828,7 +418145,7 @@ QuoVidi (previously known as BioGO) is an interface to manage large (and small)
     sc:url "http://www.r-project.org/" .
 
 <https://bio.tools/r-chie> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0097,
         edam:topic_0099,
@@ -396851,7 +418168,7 @@ R-chie allows you to make arc diagrams of RNA secondary structures, allowing for
     sc:url "http://www.e-rna.org/rchie/" .
 
 <https://bio.tools/r-cloud_workbench> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0605,
         edam:topic_2269 ;
@@ -396866,7 +418183,7 @@ R-chie allows you to make arc diagrams of RNA secondary structures, allowing for
     sc:url "http://www.ebi.ac.uk/Tools/rcloud/" .
 
 <https://bio.tools/r-coffee> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0082,
@@ -396887,8 +418204,28 @@ R-chie allows you to make arc diagrams of RNA secondary structures, allowing for
     sc:url "http://tcoffee.crg.cat/apps/tcoffee/do:rcoffee" ;
     biotools:primaryContact "Cedric Notredame" .
 
+<https://bio.tools/r-crispr> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0099,
+        edam:topic_3303,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.3390/GENES12121878>,
+        "pmcid:PMC8702036",
+        "pubmed:34946828" ;
+    sc:description "A Deep Learning Network to Predict Off-Target Activities with Mismatch, Insertion and Deletion in CRISPR-Cas9 System." ;
+    sc:featureList edam:operation_0415,
+        edam:operation_2575,
+        edam:operation_3927 ;
+    sc:isAccessibleForFree true ;
+    sc:name "R-CRISPR" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://codeocean.com/capsule/9553651/tree/v1" .
+
 <https://bio.tools/r-deco> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3335 ;
     sc:citation <https://doi.org/10.7717/PEERJ-CS.226>,
@@ -396903,7 +418240,7 @@ R-chie allows you to make arc diagrams of RNA secondary structures, allowing for
     biotools:primaryContact "Jonathan Moeyersons" .
 
 <https://bio.tools/r-gada> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:description "R implementation of GADA (Genetic Alteration Detector Algorithm) - used to detect CNVs from aCGH and intensity array SNP data" ;
     sc:isAccessibleForFree true ;
@@ -396916,7 +418253,7 @@ R-chie allows you to make arc diagrams of RNA secondary structures, allowing for
     sc:url "https://github.com/isglobal-brge/R-GADA" .
 
 <https://bio.tools/r-gc-test> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3053,
@@ -396931,8 +418268,76 @@ R-chie allows you to make arc diagrams of RNA secondary structures, allowing for
     sc:softwareHelp <https://www.stt.msu.edu/~cui/software.html> ;
     sc:url "http://www.stt.msu.edu/~cui/software.html" .
 
+<https://bio.tools/r-loop> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0097,
+        edam:topic_0634,
+        edam:topic_0659,
+        edam:topic_0749,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAC537>,
+        "pmcid:PMC9303298",
+        "pubmed:35758606" ;
+    sc:description "Quality-controlled R-loop meta-analysis reveals the characteristics of R-loop consensus regions." ;
+    sc:featureList edam:operation_0441,
+        edam:operation_2429,
+        edam:operation_3196,
+        edam:operation_3222,
+        edam:operation_3501 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "R-loop" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/Bishop-Laboratory/RLoop-QC-Meta-Analysis-Miller-2022" .
+
+<https://bio.tools/r-loopbase> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0218,
+        edam:topic_0634,
+        edam:topic_2640,
+        edam:topic_3300,
+        edam:topic_3334 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAB1103>,
+        "pmcid:PMC8728142",
+        "pubmed:34792163" ;
+    sc:description "A knowledgebase for genome-wide R-loop formation and regulation." ;
+    sc:featureList edam:operation_0306,
+        edam:operation_3208,
+        edam:operation_3222 ;
+    sc:isAccessibleForFree true ;
+    sc:name "R-loopBase" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://rloopbase.nju.edu.cn" .
+
+<https://bio.tools/r-pointhop> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0108,
+        edam:topic_3382,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1109/TIP.2022.3160609>,
+        "pubmed:35324441" ;
+    sc:description "A Green, Accurate, and Unsupervised Point Cloud Registration Method." ;
+    sc:featureList edam:operation_2939,
+        edam:operation_3891,
+        edam:operation_3935 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "R-PointHop" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/pranavkdm/R-PointHop" .
+
 <https://bio.tools/r-qtl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3055 ;
@@ -396950,7 +418355,7 @@ R-chie allows you to make arc diagrams of RNA secondary structures, allowing for
     biotools:primaryContact <http://orcid.org/0000-0002-4914-6671> .
 
 <https://bio.tools/r-sap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0099,
@@ -396966,7 +418371,7 @@ R-chie allows you to make arc diagrams of RNA secondary structures, allowing for
     biotools:primaryContact "Vinay Mittal" .
 
 <https://bio.tools/r2_hat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_2269 ;
@@ -396978,7 +418383,7 @@ R-chie allows you to make arc diagrams of RNA secondary structures, allowing for
     sc:url "https://yunliweb.its.unc.edu/software.html" .
 
 <https://bio.tools/r2_platform> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_3518 ;
@@ -396995,7 +418400,7 @@ R-chie allows you to make arc diagrams of RNA secondary structures, allowing for
     biotools:primaryContact "Dr. Jan Koster" .
 
 <https://bio.tools/r2dgc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3172,
         edam:topic_3370,
@@ -397016,7 +418421,7 @@ R-chie allows you to make arc diagrams of RNA secondary structures, allowing for
         "Sara Cooper" .
 
 <https://bio.tools/r2dt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0097,
         edam:topic_0659,
@@ -397043,8 +418448,26 @@ Visualise RNA secondary structure in standard orientations using RNA 2D Template
     sc:name "R2DT" ;
     sc:url "https://rnacentral.org/r2dt" .
 
+<https://bio.tools/r2ogs5> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0769,
+        edam:topic_2269,
+        edam:topic_3372 ;
+    sc:citation <https://doi.org/10.1111/GWAT.13221>,
+        "pubmed:35729090" ;
+    sc:description "Calibration of Numerical Groundwater Flow Models with Bayesian Optimization in R." ;
+    sc:featureList edam:operation_2238 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "r2ogs5" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://gitlab.opengeosys.org/ogs5/r2ogs5" .
+
 <https://bio.tools/r2r> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_3168 ;
@@ -397060,14 +418483,14 @@ Visualise RNA secondary structure in standard orientations using RNA 2D Template
 
 <https://bio.tools/r3cpet> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Pathway or network" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0097,
@@ -397095,7 +418518,7 @@ Visualise RNA secondary structure in standard orientations using RNA 2D Template
     biotools:primaryContact <http://orcid.org/0000-0001-5361-1858> .
 
 <https://bio.tools/r3cseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3168 ;
@@ -397113,7 +418536,7 @@ Visualise RNA secondary structure in standard orientations using RNA 2D Template
     biotools:primaryContact "Supat Thongjuea" .
 
 <https://bio.tools/r3d-2-msa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0099,
@@ -397130,7 +418553,7 @@ Visualise RNA secondary structure in standard orientations using RNA 2D Template
     sc:url "http://rna.bgsu.edu/r3d-2-msa" .
 
 <https://bio.tools/r3d-blast> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0097,
@@ -397150,7 +418573,7 @@ Visualise RNA secondary structure in standard orientations using RNA 2D Template
     biotools:primaryContact "Chin Lung Lu" .
 
 <https://bio.tools/r3d-blast2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0099 ;
@@ -397166,7 +418589,7 @@ Visualise RNA secondary structure in standard orientations using RNA 2D Template
     biotools:primaryContact "Chin Lung Lu" .
 
 <https://bio.tools/r3d_align> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0082,
@@ -397187,7 +418610,7 @@ Visualise RNA secondary structure in standard orientations using RNA 2D Template
     biotools:primaryContact "Contact form" .
 
 <https://bio.tools/r453plus1toolbox> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0622,
@@ -397208,7 +418631,7 @@ Visualise RNA secondary structure in standard orientations using RNA 2D Template
     biotools:primaryContact <http://orcid.org/0000-0002-6382-9428> .
 
 <https://bio.tools/r4rna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0099 ;
@@ -397229,7 +418652,7 @@ Visualise RNA secondary structure in standard orientations using RNA 2D Template
     biotools:primaryContact <http://orcid.org/0000-0001-9203-6323> .
 
 <https://bio.tools/rCASC> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622 ;
     sc:author <https://orcid.org/0000-0001-6125-9460>,
@@ -397246,7 +418669,7 @@ Visualise RNA secondary structure in standard orientations using RNA 2D Template
     biotools:primaryContact "Raffaele A Calogero" .
 
 <https://bio.tools/rKIN> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_3500 ;
     sc:citation <https://doi.org/10.1111/1365-2656.13159>,
@@ -397260,7 +418683,7 @@ The isotopic niche of consumers represents biologically relevant information on
     sc:url "https://github.com/salbeke/rKIN" .
 
 <https://bio.tools/rMSIKeyIon> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3172,
@@ -397281,7 +418704,7 @@ The isotopic niche of consumers represents biologically relevant information on
     biotools:primaryContact "Esteban del Castillo" .
 
 <https://bio.tools/rMSIcleanup> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_0769,
         edam:topic_3172,
@@ -397302,7 +418725,7 @@ rMSIcleanup is an open-source R package to annotate matrix-related signals in MS
     sc:url "https://github.com/gbaquer/rMSIcleanup" .
 
 <https://bio.tools/rMyCoPortal> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3050,
         edam:topic_3277 ;
@@ -397322,7 +418745,7 @@ rMSIcleanup is an open-source R package to annotate matrix-related signals in MS
     biotools:primaryContact "Franz-Sebastian Krah" .
 
 <https://bio.tools/rPowerlib> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3315,
         edam:topic_3360 ;
     sc:citation <https://doi.org/10.1080/03610926.2018.1433849>,
@@ -397334,7 +418757,7 @@ rMSIcleanup is an open-source R package to annotate matrix-related signals in MS
     sc:url "http://github.com/SampleSizeShop/rPowerlib" .
 
 <https://bio.tools/rREST> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3384,
@@ -397356,7 +418779,7 @@ rMSIcleanup is an open-source R package to annotate matrix-related signals in MS
         "Pedro A. Valdés Sosa" .
 
 <https://bio.tools/rSNAPsim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0593,
         edam:topic_0749,
@@ -397382,7 +418805,7 @@ Translated by Will Raymond - 2018/2019""" ;
     sc:url "https://github.com/MunskyGroup/rSNAPsim.git" .
 
 <https://bio.tools/rSeqTU-A> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3308,
@@ -397406,7 +418829,7 @@ Translated by Will Raymond - 2018/2019""" ;
     biotools:primaryContact "Sheng-Yong, Niu" .
 
 <https://bio.tools/r_cloud_workbench> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_2269 ;
@@ -397428,7 +418851,7 @@ Translated by Will Raymond - 2018/2019""" ;
     biotools:primaryContact "Andrew Tikhonov" .
 
 <https://bio.tools/r_for_cdna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3512 ;
@@ -397443,7 +418866,7 @@ Translated by Will Raymond - 2018/2019""" ;
     sc:url "http://tsenglab.biostat.pitt.edu/software.htm#cDNA" .
 
 <https://bio.tools/r_spider> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0621,
@@ -397464,8 +418887,29 @@ Translated by Will Raymond - 2018/2019""" ;
     sc:url "http://mips.helmholtz-muenchen.de/proj/rspider" ;
     biotools:primaryContact "R Spider Support" .
 
+<https://bio.tools/ra> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Nucleic acid sequence" ] ;
+    bsc:output [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_0925" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Sequence assembly" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Suite" ;
+    sc:applicationSubCategory edam:topic_0196,
+        edam:topic_0622 ;
+    sc:description "Assembler for raw de novo genome assembly of long uncorrected reads." ;
+    sc:featureList edam:operation_0525 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "Ra" ;
+    sc:operatingSystem "Linux" ;
+    sc:url "https://github.com/lbcb-sci/ra" .
+
 <https://bio.tools/ra-map> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0621,
         edam:topic_0625,
@@ -397483,8 +418927,30 @@ Rheumatoid arthritis (RA) is a progressive, inflammatory autoimmune disease of u
     sc:name "RA-map" ;
     sc:url "http://ramap.elixir-luxembourg.org" .
 
+<https://bio.tools/raacfold> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0654,
+        edam:topic_2814,
+        edam:topic_3306,
+        edam:topic_3510 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAC415>,
+        "pmcid:PMC9252778",
+        "pubmed:35639512" ;
+    sc:description "A webserver for 3D visualization and analysis of protein structure by using reduced amino acid alphabets." ;
+    sc:featureList edam:operation_0302,
+        edam:operation_0564,
+        edam:operation_0570 ;
+    sc:isAccessibleForFree true ;
+    sc:name "RaacFold" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://bioinfor.imu.edu.cn/raacfold" .
+
 <https://bio.tools/raaclogo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0130,
         edam:topic_0154,
@@ -397503,14 +418969,14 @@ Sequence logos give a fast and concise display in visualizing consensus sequence
 
 <https://bio.tools/raams> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ] ;
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_3654" ;
+            sc:name "Peptide identification" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Expression data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_2269,
@@ -397529,7 +418995,7 @@ Sequence logos give a fast and concise display in visualizing consensus sequence
     sc:url "http://informatics.mayo.edu/svn/trunk/mprc/raams/index.html" .
 
 <https://bio.tools/rabbitmash> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
         edam:topic_0622 ;
@@ -397544,7 +419010,7 @@ RabbitMash is an efficient highly optimized implementation of Mash which can tak
     sc:url "https://github.com/ZekunYin/RabbitMash" .
 
 <https://bio.tools/rabbitqc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0769,
         edam:topic_3303 ;
@@ -397559,8 +419025,32 @@ A tool designed to provide high-speed scalable quality control for sequencing da
     sc:name "RabbitQC" ;
     sc:url "https://github.com/ZekunYin/RabbitQC" .
 
+<https://bio.tools/rabbitv> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_3168,
+        edam:topic_3174,
+        edam:topic_3365 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC187>,
+        "pubmed:35333310" ;
+    sc:description "A highly optimized and practical toolkit for the detection of viruses and microorganisms in sequencing data. It can handle large-scale datasets such as bacterial reference genomes on commonly used servers with limited compute resources." ;
+    sc:featureList edam:operation_1812,
+        edam:operation_3359,
+        edam:operation_3472 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "RabbitV" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/RabbitBio/RabbitV" .
+
 <https://bio.tools/rabit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0204,
@@ -397576,7 +419066,7 @@ A tool designed to provide high-speed scalable quality control for sequencing da
     sc:url "http://rabit.dfci.harvard.edu/" .
 
 <https://bio.tools/raboonet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -397594,7 +419084,7 @@ A tool designed to provide high-speed scalable quality control for sequencing da
     biotools:primaryContact "Dana Ferranti" .
 
 <https://bio.tools/rac> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_2269,
@@ -397611,7 +419101,7 @@ A tool designed to provide high-speed scalable quality control for sequencing da
     biotools:primaryContact "Baldan Damiano" .
 
 <https://bio.tools/raca> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196 ;
     sc:citation <https://doi.org/10.1073/pnas.1220349110> ;
@@ -397622,7 +419112,7 @@ A tool designed to provide high-speed scalable quality control for sequencing da
     biotools:primaryContact "Jaebum Kim" .
 
 <https://bio.tools/race> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0654,
@@ -397639,7 +419129,7 @@ A tool designed to provide high-speed scalable quality control for sequencing da
     sc:url "http://race.unil.ch/" .
 
 <https://bio.tools/racipe> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0204,
@@ -397662,7 +419152,7 @@ A tool designed to provide high-speed scalable quality control for sequencing da
     biotools:primaryContact "Bin Huang" .
 
 <https://bio.tools/ractip> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0099 ;
@@ -397678,7 +419168,7 @@ A tool designed to provide high-speed scalable quality control for sequencing da
     sc:url "http://rtips.dna.bio.keio.ac.jp/ractip/" .
 
 <https://bio.tools/rad> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2640,
         edam:topic_3170,
@@ -397700,7 +419190,7 @@ RAD is a toolkit that unmixes bulk tumor samples. Given a non-negative bulk RNA
     sc:url "https://github.com/CMUSchwartzLab/RAD" .
 
 <https://bio.tools/rad-deg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0749,
@@ -397718,14 +419208,12 @@ RAD is a toolkit that unmixes bulk tumor samples. Given a non-negative bulk RNA
 
 <https://bio.tools/radar> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:name "Protein sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:name "Protein features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0157 ;
     sc:author "Andreas Heger",
@@ -397745,7 +419233,7 @@ RAD is a toolkit that unmixes bulk tumor samples. Given a non-negative bulk RNA
     biotools:primaryContact "Web Production" .
 
 <https://bio.tools/radar-cancer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_0749,
         edam:topic_3170,
@@ -397767,7 +419255,7 @@ Directory containing files, one for each chromosome.""" ;
     sc:url "http://radar.gersteinlab.org" .
 
 <https://bio.tools/radar-rna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_2640,
         edam:topic_3170,
@@ -397788,7 +419276,7 @@ Directory containing files, one for each chromosome.""" ;
     sc:url "https://github.com/scottzijiezhang/RADAR" .
 
 <https://bio.tools/radatlas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0218,
         edam:topic_0602,
@@ -397804,7 +419292,7 @@ Directory containing files, one for each chromosome.""" ;
     sc:url "http://biokb.ncpsb.org/radatlas" .
 
 <https://bio.tools/radiomics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3306,
@@ -397827,7 +419315,7 @@ Directory containing files, one for each chromosome.""" ;
     biotools:primaryContact "Martin Vallières" .
 
 <https://bio.tools/radis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_3056,
@@ -397842,8 +419330,29 @@ Directory containing files, one for each chromosome.""" ;
         <http://www1.montpellier.inra.fr/CBGP/software/RADIS/files/tutorial_radis_1.0.0.pdf> ;
     sc:url "http://www1.montpellier.inra.fr/CBGP/software/RADIS/" .
 
+<https://bio.tools/radlex> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0089,
+        edam:topic_3384,
+        edam:topic_3444 ;
+    sc:citation <https://doi.org/10.1186/S12880-022-00776-8>,
+        "pmcid:PMC8944106",
+        "pubmed:35331160" ;
+    sc:description "Determining the applicability of the RSNA radiology lexicon (RadLex) in high-grade glioma MRI reporting." ;
+    sc:featureList edam:operation_2422,
+        edam:operation_3436,
+        edam:operation_3625 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Other" ;
+    sc:name "RadLex" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://www.radlex.org" .
+
 <https://bio.tools/radon-backprojection-algorithm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -397862,7 +419371,7 @@ Directory containing files, one for each chromosome.""" ;
     biotools:primaryContact "Enio" .
 
 <https://bio.tools/radsex> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0621,
         edam:topic_0769,
@@ -397885,7 +419394,7 @@ This workflow implements all the analyses presented in the RADSex paper and gene
     sc:url "https://github.com/SexGenomicsToolkit/radsex" .
 
 <https://bio.tools/radtools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3053,
@@ -397901,7 +419410,7 @@ This workflow implements all the analyses presented in the RADSex paper and gene
     sc:url "https://www.wiki.ed.ac.uk/display/RADSequencing/Home" .
 
 <https://bio.tools/radtyping> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3053,
@@ -397921,7 +419430,7 @@ This workflow implements all the analyses presented in the RADSex paper and gene
     sc:url "http://www2.ouc.edu.cn/mollusk/detailen.asp?id=727" .
 
 <https://bio.tools/rafah> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3050,
         edam:topic_3168,
         edam:topic_3174,
@@ -397940,7 +419449,7 @@ One fundamental question when trying to describe viruses of Bacteria and Archaea
     sc:url "https://sourceforge.net/projects/rafah/" .
 
 <https://bio.tools/rafsil> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3170,
@@ -397960,7 +419469,7 @@ One fundamental question when trying to describe viruses of Bacteria and Archaea
     biotools:primaryContact "Dennis Kostka" .
 
 <https://bio.tools/raggedexperiment> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0622 ;
     sc:description "This package provides a flexible representation of copy number, mutation, and other data that fit into the ragged array schema for genomic location data. The basic representation of such data provides a rectangular flat table interface to the user with range information in the rows and samples/specimen in the columns." ;
@@ -397976,7 +419485,7 @@ One fundamental question when trying to describe viruses of Bacteria and Archaea
     biotools:primaryContact "Martin Morgan" .
 
 <https://bio.tools/ragout> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0196,
@@ -397992,7 +419501,7 @@ One fundamental question when trying to describe viruses of Bacteria and Archaea
     sc:url "http://fenderglass.github.io/Ragout/" .
 
 <https://bio.tools/ragtag> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196 ;
     sc:citation <https://doi.org/10.1186/s13059-019-1829-6> ;
@@ -398004,7 +419513,7 @@ One fundamental question when trying to describe viruses of Bacteria and Archaea
     sc:url "https://github.com/malonge/RagTag" .
 
 <https://bio.tools/raid> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -398021,7 +419530,7 @@ One fundamental question when trying to describe viruses of Bacteria and Archaea
     biotools:primaryContact "Brendan Joyce" .
 
 <https://bio.tools/raida> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0621,
@@ -398037,7 +419546,7 @@ One fundamental question when trying to describe viruses of Bacteria and Archaea
     sc:url "http://cals.arizona.edu/~anling/sbg/software.htm" .
 
 <https://bio.tools/raig> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_3053,
@@ -398051,7 +419560,7 @@ One fundamental question when trying to describe viruses of Bacteria and Archaea
     sc:url "http://compbio.cs.brown.edu/projects/raig/" .
 
 <https://bio.tools/rails_cobbler> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0654,
@@ -398067,7 +419576,7 @@ One fundamental question when trying to describe viruses of Bacteria and Archaea
     sc:url "https://github.com/bcgsc/RAILS" .
 
 <https://bio.tools/rain> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -398090,7 +419599,7 @@ One fundamental question when trying to describe viruses of Bacteria and Archaea
     biotools:primaryContact "Paul F. Thaben" .
 
 <https://bio.tools/rainbow> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/bts482> ;
@@ -398104,7 +419613,7 @@ One fundamental question when trying to describe viruses of Bacteria and Archaea
     sc:url "http://sourceforge.net/projects/bio-rainbow/" .
 
 <https://bio.tools/rainbowr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0625,
         edam:topic_0780,
@@ -398130,7 +419639,7 @@ Supplementary data and scripts used in the article Kosuke Hamazaki and Hiroyoshi
     sc:url "https://cran.r-project.org/web/packages/RAINBOWR/index.html" .
 
 <https://bio.tools/rainbowstorm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3047,
         edam:topic_3382 ;
@@ -398153,7 +419662,7 @@ Fiji: A batteries-included distribution of ImageJ.""" ;
     sc:url "https://imagej.net" .
 
 <https://bio.tools/raindrop> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3308,
         edam:topic_3512 ;
@@ -398168,7 +419677,7 @@ Fiji: A batteries-included distribution of ImageJ.""" ;
     sc:url "https://gitlab.rlp.net/stnieble/raindrop" .
 
 <https://bio.tools/rainforest> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0625,
@@ -398189,14 +419698,14 @@ R and Python code to run the RAINFOREST (tReAtment benefIt prediction using raNd
 
 <https://bio.tools/raiss> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3053,
@@ -398215,7 +419724,7 @@ R and Python code to run the RAINFOREST (tReAtment benefIt prediction using raNd
     biotools:primaryContact <http://orcid.org/0000-0002-7554-6783> .
 
 <https://bio.tools/rama> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3518 ;
@@ -398233,7 +419742,7 @@ R and Python code to run the RAINFOREST (tReAtment benefIt prediction using raNd
     biotools:primaryContact "Raphael Gottardo" .
 
 <https://bio.tools/ramaco> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654,
@@ -398249,7 +419758,7 @@ R and Python code to run the RAINFOREST (tReAtment benefIt prediction using raNd
     biotools:primaryContact "Stefan Kurtz" .
 
 <https://bio.tools/rambo-k> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0654,
@@ -398265,7 +419774,7 @@ R and Python code to run the RAINFOREST (tReAtment benefIt prediction using raNd
     sc:url "https://gitlab.com/SimonHTausch/RAMBO-K" .
 
 <https://bio.tools/ramclustr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3172 ;
     sc:description "A feature clustering algorithm for non-targeted mass spectrometric metabolomics data." ;
@@ -398276,7 +419785,7 @@ R and Python code to run the RAINFOREST (tReAtment benefIt prediction using raNd
     sc:url "https://github.com/cbroeckl/RAMClustR" .
 
 <https://bio.tools/ramd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0176,
         edam:topic_2830 ;
@@ -398294,7 +419803,7 @@ Random Acceleration Molecular Dynamics (RAMD) is a method to carry out molecular
     sc:url "https://github.com/HITS-MCM/GROMACS-ramd" .
 
 <https://bio.tools/ramigo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0089 ;
@@ -398314,7 +419823,7 @@ Random Acceleration Molecular Dynamics (RAMD) is a method to carry out molecular
     biotools:primaryContact "Markus Schroeder" .
 
 <https://bio.tools/ramirna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0659,
@@ -398328,7 +419837,7 @@ Random Acceleration Molecular Dynamics (RAMD) is a method to carry out molecular
     sc:url "https://ircb.iiita.ac.in/toolkit.html" .
 
 <https://bio.tools/ramona> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0622,
@@ -398345,7 +419854,7 @@ Random Acceleration Molecular Dynamics (RAMD) is a method to carry out molecular
     sc:url "http://mips.helmholtz-muenchen.de/mona/" .
 
 <https://bio.tools/ramp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -398363,8 +419872,56 @@ Random Acceleration Molecular Dynamics (RAMD) is a method to carry out molecular
     sc:url "https://github.com/Mathelab/RaMP-DB" ;
     biotools:primaryContact "Ewy A. Mathé" .
 
+<https://bio.tools/ramp-db> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0089,
+        edam:topic_0154,
+        edam:topic_0602,
+        edam:topic_3172,
+        edam:topic_3407 ;
+    sc:citation <https://doi.org/10.1101/2022.01.19.476987> ;
+    sc:description "A renovated knowledgebase for deriving biological and chemical insight from genes, proteins, and metabolites." ;
+    sc:featureList edam:operation_1812,
+        edam:operation_2421,
+        edam:operation_2422,
+        edam:operation_2436,
+        edam:operation_3502 ;
+    sc:isAccessibleForFree true ;
+    sc:name "RaMP-DB" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://ncats.github.io/RaMP-DB/RaMP_Vignette.html> ;
+    sc:softwareVersion "2.0" ;
+    sc:url "https://rampdb.nih.gov" .
+
+<https://bio.tools/ramp_atlas> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0108,
+        edam:topic_0203,
+        edam:topic_2229,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.1093/NARGAB/LQAC039>,
+        "pmcid:PMC9155233",
+        "pubmed:35664804" ;
+    sc:description "Facilitating tissue and cell-specific ramp sequence analyses through an intuitive web interface." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_0337,
+        edam:operation_2422 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "Ramp Atlas" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://ramps.byu.edu" .
+
 <https://bio.tools/rampart> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0769 ;
@@ -398378,7 +419935,7 @@ Random Acceleration Molecular Dynamics (RAMD) is a method to carry out molecular
     sc:url "https://github.com/TGAC/RAMPART" .
 
 <https://bio.tools/ramr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3168,
         edam:topic_3295,
@@ -398395,7 +419952,7 @@ ramr is an R package for detection of low-frequency aberrant methylation events
     sc:url "https://github.com/BBCG/ramr" .
 
 <https://bio.tools/ramwas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3295,
@@ -398415,7 +419972,7 @@ ramr is an R package for detection of low-frequency aberrant methylation events
     biotools:primaryContact "Andrey A Shabalin" .
 
 <https://bio.tools/ranacapa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3050,
         edam:topic_3174,
@@ -398441,7 +419998,7 @@ ramr is an R package for detection of low-frequency aberrant methylation events
         "Martinez Arbizu" .
 
 <https://bio.tools/ranbow> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0654,
         edam:topic_0780,
@@ -398461,7 +420018,7 @@ Reconstructing haplotypes from sequencing data is one of the major challenges in
     sc:url "https://www.molgen.mpg.de/ranbow" .
 
 <https://bio.tools/randcorr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:description "randcorr is a MATLAB function that implements the algorithm by Pourahmadi and Wang for generating a random p x p correlation matrix." ;
     sc:isAccessibleForFree true ;
@@ -398473,16 +420030,34 @@ Reconstructing haplotypes from sequencing data is one of the major challenges in
     sc:url "https://www.mathworks.com/matlabcentral/fileexchange/68810-randcorr" ;
     biotools:primaryContact "Statovic" .
 
+<https://bio.tools/randepict> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_3382 ;
+    sc:citation <https://doi.org/10.1186/S13321-022-00609-4>,
+        "pmcid:PMC9169273",
+        "pubmed:35668480" ;
+    sc:description "An easy-to-use utility to generate a big variety of chemical structure depictions (random depiction styles and image augmentations) based on RDKit, CDK, Indigo and PIKAChU." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_2423 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "RanDepict" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/OBrink/RanDepict" .
+
 <https://bio.tools/randfold> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3495" ;
-            sc:name "RNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3495" ] ;
+            sc:additionalType "http://edamontology.org/data_3495" ;
+            sc:name "RNA sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1708" ;
-            sc:name "RNA secondary structure image" ;
-            sc:sameAs "http://edamontology.org/data_1708" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1708" ;
+            sc:encodingFormat "http://edamontology.org/format_2076" ;
+            sc:name "RNA secondary structure image" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0659 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/bth374> ;
@@ -398498,7 +420073,7 @@ Reconstructing haplotypes from sequencing data is one of the major challenges in
     sc:url "http://bioinformatics.psb.ugent.be/software/details/Randfold" .
 
 <https://bio.tools/randomize> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0632,
         edam:topic_3179,
@@ -398515,7 +420090,7 @@ High-throughput DNA methylation arrays are susceptible to bias facilitated by ba
     sc:url "https://coph-usf.shinyapps.io/RANDOMIZE/" .
 
 <https://bio.tools/randompat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0602,
@@ -398530,7 +420105,7 @@ High-throughput DNA methylation arrays are susceptible to bias facilitated by ba
     sc:url "http://www.jurgott.org/linkage/randompat.html" .
 
 <https://bio.tools/randomwalkrestartmh> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_2259,
@@ -398549,7 +420124,7 @@ High-throughput DNA methylation arrays are susceptible to bias facilitated by ba
     biotools:primaryContact "Alberto Valdeolivas Urbelz" .
 
 <https://bio.tools/randpack> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3379 ;
@@ -398567,7 +420142,7 @@ High-throughput DNA methylation arrays are susceptible to bias facilitated by ba
     biotools:primaryContact "Robert Gentleman" .
 
 <https://bio.tools/rangeshifter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_3056,
         edam:topic_3299 ;
@@ -398591,7 +420166,7 @@ We’ve been picked to host a RangeShiftR workshop at the IBS 2022 in Vancouver!
     sc:url "https://rangeshifter.github.io/" .
 
 <https://bio.tools/rank-in> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3170,
@@ -398613,7 +420188,7 @@ We’ve been picked to host a RangeShiftR workshop at the IBS 2022 in Vancouver!
     sc:url "http://www.badd-cao.net/rank-in/index.html" .
 
 <https://bio.tools/rankcorr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3308,
         edam:topic_3315,
@@ -398633,7 +420208,7 @@ A marker selection method for scRNA-seq data based on rank correlation. See the
     sc:url "https://github.com/ahsv/RankCorr" .
 
 <https://bio.tools/rankgene> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0634,
@@ -398648,22 +420223,22 @@ A marker selection method for scRNA-seq data based on rank correlation. See the
 
 <https://bio.tools/rankoptimizer> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0637,
@@ -398682,7 +420257,7 @@ A marker selection method for scRNA-seq data based on rank correlation. See the
     biotools:primaryContact "Galaxy Support Team" .
 
 <https://bio.tools/rankpep> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121 ;
     sc:citation <https://doi.org/10.1016/S0198-8859(02)00432-9>,
@@ -398698,7 +420273,7 @@ A marker selection method for scRNA-seq data based on rank correlation. See the
     biotools:primaryContact "SECRETARIA GENERAL DE CIENCIA, TECNOLOGIA E INNOVACION OF SPAIN" .
 
 <https://bio.tools/rankprod> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203 ;
@@ -398716,10 +420291,9 @@ A marker selection method for scRNA-seq data based on rank correlation. See the
 
 <https://bio.tools/rap> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2975" ;
-            sc:name "Nucleic acid sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_2975" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2975" ;
+            sc:name "Nucleic acid sequence (raw)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_3168,
@@ -398737,7 +420311,7 @@ A marker selection method for scRNA-seq data based on rank correlation. See the
     biotools:primaryContact "Graziano Pesole" .
 
 <https://bio.tools/raphael> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0081 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/bts550> ;
@@ -398754,7 +420328,7 @@ A marker selection method for scRNA-seq data based on rank correlation. See the
     biotools:primaryContact "Silvio C.E. Tosatto" .
 
 <https://bio.tools/rapid> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_2814,
@@ -398770,7 +420344,7 @@ A marker selection method for scRNA-seq data based on rank correlation. See the
     sc:url "http://biomine.cs.vcu.edu/servers/RAPID/" .
 
 <https://bio.tools/rapidgsea> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2269 ;
@@ -398788,8 +420362,28 @@ A marker selection method for scRNA-seq data based on rank correlation. See the
     sc:url "https://github.com/gravitino/cudaGSEA" ;
     biotools:primaryContact <http://orcid.org/0000-0002-7995-1858> .
 
+<https://bio.tools/rapidhrv> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0769,
+        edam:topic_3335,
+        edam:topic_3572 ;
+    sc:citation <https://doi.org/10.7717/PEERJ.13147>,
+        "pmcid:PMC8957280",
+        "pubmed:35345583" ;
+    sc:description "A package for preprocessing, analyzing and visualizing cardiac data." ;
+    sc:featureList edam:operation_0337 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "RapidHRV" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://github.com/peterakirk/RapidHRV/blob/main/resources/tutorial.ipynb> ;
+    sc:url "https://pypi.org/project/rapidhrv/" .
+
 <https://bio.tools/rapidnj> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0084 ;
     sc:citation <https://doi.org/10.1007/978-3-540-87361-7_10> ;
@@ -398805,7 +420399,7 @@ A marker selection method for scRNA-seq data based on rank correlation. See the
     biotools:primaryContact "Martin Simonsen" .
 
 <https://bio.tools/rapido> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -398826,7 +420420,7 @@ A marker selection method for scRNA-seq data based on rank correlation. See the
     biotools:primaryContact "RAPIDO Support" .
 
 <https://bio.tools/rapidopgs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2269,
         edam:topic_3517 ;
@@ -398841,7 +420435,7 @@ Polygenic scores (PGS) aim to predict complex traits at an individual level base
     sc:url "https://github.com/GRealesM/RapidoPGS" .
 
 <https://bio.tools/rapidr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654,
@@ -398859,7 +420453,7 @@ Polygenic scores (PGS) aim to predict complex traits at an individual level base
     biotools:primaryContact "Kitty Lo" .
 
 <https://bio.tools/rapidrmsd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0154,
@@ -398878,7 +420472,7 @@ Polygenic scores (PGS) aim to predict complex traits at an individual level base
     biotools:primaryContact "Sergei Grudinin" .
 
 <https://bio.tools/rapier> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0654,
@@ -398898,7 +420492,7 @@ Polygenic scores (PGS) aim to predict complex traits at an individual level base
     biotools:primaryContact "Humberto Ortiz Zuazaga" .
 
 <https://bio.tools/rapmap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0099,
@@ -398917,7 +420511,7 @@ Polygenic scores (PGS) aim to predict complex traits at an individual level base
     biotools:primaryContact "Rob Patro" .
 
 <https://bio.tools/rappid> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_2830,
         edam:topic_3360 ;
@@ -398931,7 +420525,7 @@ Abstract Heterogeneous immunoassays such as ELISA have become indispensable in m
     sc:url "https://doi.org/10.1101/2020.10.31.363044" .
 
 <https://bio.tools/rapppid> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0128,
@@ -398951,7 +420545,7 @@ Abstract Heterogeneous immunoassays such as ELISA have become indispensable in m
     sc:url "https://github.com/jszym/rapppid" .
 
 <https://bio.tools/rapsearch> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3174 ;
     sc:citation "pubmed:21575167" ;
@@ -398967,7 +420561,7 @@ Abstract Heterogeneous immunoassays such as ELISA have become indispensable in m
         "Yuzhen Ye" .
 
 <https://bio.tools/raptgen> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0160,
@@ -398985,7 +420579,7 @@ Abstract Heterogeneous immunoassays such as ELISA have become indispensable in m
     sc:url "https://github.com/hmdlab/raptgen" .
 
 <https://bio.tools/raptor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0102,
@@ -399010,7 +420604,7 @@ Abstract Heterogeneous immunoassays such as ELISA have become indispensable in m
     sc:url "https://github.com/seqan/raptor" .
 
 <https://bio.tools/raptorx> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0082,
@@ -399028,7 +420622,7 @@ Abstract Heterogeneous immunoassays such as ELISA have become indispensable in m
     sc:url "http://raptorx.uchicago.edu/" .
 
 <https://bio.tools/raptorx-angle> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_2814,
         edam:topic_3474 ;
@@ -399042,7 +420636,7 @@ Abstract Heterogeneous immunoassays such as ELISA have become indispensable in m
     biotools:primaryContact "Yujuan Gao" .
 
 <https://bio.tools/raptr-sv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2885,
         edam:topic_3053,
@@ -399058,7 +420652,7 @@ Abstract Heterogeneous immunoassays such as ELISA have become indispensable in m
     sc:url "https://github.com/njdbickhart/RAPTR-SV" .
 
 <https://bio.tools/raptranker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0160,
         edam:topic_0654,
@@ -399080,7 +420674,7 @@ RaptRanker is a software for RNA aptamer selection from HT-SELEX experiment data
     sc:url "https://github.com/hmdlab/RaptRanker" .
 
 <https://bio.tools/raremetal> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2885,
         edam:topic_3053,
@@ -399095,8 +420689,27 @@ RaptRanker is a software for RNA aptamer selection from HT-SELEX experiment data
     sc:softwareHelp <http://genome.sph.umich.edu/wiki/RAREMETAL_Documentation> ;
     sc:url "http://genome.sph.umich.edu/wiki/RAREMETAL" .
 
+<https://bio.tools/raresim> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0634,
+        edam:topic_2815,
+        edam:topic_3053 ;
+    sc:citation <https://doi.org/10.1016/J.AJHG.2022.02.009>,
+        "pmcid:PMC9069075",
+        "pubmed:35298919" ;
+    sc:description "A simulation method for very rare genetic variants." ;
+    sc:featureList edam:operation_0282 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "RAREsim" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=35298919" .
+
 <https://bio.tools/rarevariantvis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0199,
@@ -399118,7 +420731,7 @@ RaptRanker is a software for RNA aptamer selection from HT-SELEX experiment data
     biotools:primaryContact "Tomasz Stokowy" .
 
 <https://bio.tools/rariant> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0199 ;
@@ -399136,7 +420749,7 @@ RaptRanker is a software for RNA aptamer selection from HT-SELEX experiment data
     biotools:primaryContact "Julian Gehring" .
 
 <https://bio.tools/ras-model-simbiology> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2259,
@@ -399154,8 +420767,26 @@ RaptRanker is a software for RNA aptamer selection from HT-SELEX experiment data
     sc:url "https://www.mathworks.com/matlabcentral/fileexchange/37759-renin-angiotensin-system-ras-model-for-simbiology" ;
     biotools:primaryContact "Sven Mesecke" .
 
+<https://bio.tools/rascl> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0080,
+        edam:topic_0769 ;
+    sc:citation <https://doi.org/10.1101/2022.01.15.476448> ;
+    sc:description "Rapid Assessment Of selection in Clades Through Molecular Sequence Analysis." ;
+    sc:featureList edam:operation_0310,
+        edam:operation_0324,
+        edam:operation_3197 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "RASCL" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/veg/RASCL" .
+
 <https://bio.tools/rasco> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_2269,
         edam:topic_2640,
@@ -399172,7 +420803,7 @@ RASCO: An R package to Alleviate the Spatial Confounding.""" ;
     sc:url "https://github.com/douglasmesquita/RASCO" .
 
 <https://bio.tools/rascore> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0209,
         edam:topic_0769,
@@ -399192,7 +420823,7 @@ RAscore is intended to be a binary score, indicating whether the underlying comp
     sc:url "https://github.com/reymond-group/RAscore" .
 
 <https://bio.tools/raser> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0099,
@@ -399207,7 +420838,7 @@ RAscore is intended to be a binary score, indicating whether the underlying comp
     sc:url "https://www.ibp.ucla.edu/research/xiao/RASER.html" .
 
 <https://bio.tools/rasmol> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0092,
@@ -399231,7 +420862,7 @@ RAscore is intended to be a binary score, indicating whether the underlying comp
     biotools:primaryContact "Herbert J. Bernstein" .
 
 <https://bio.tools/rasmot-3d_pro> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0130,
         edam:topic_0154,
@@ -399254,7 +420885,7 @@ RAscore is intended to be a binary score, indicating whether the underlying comp
     biotools:primaryContact "Philippe Cuniasse" .
 
 <https://bio.tools/rasp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_2269,
@@ -399270,7 +420901,7 @@ RAscore is intended to be a binary score, indicating whether the underlying comp
     sc:url "http://mnh.scu.edu.cn/soft/blog/RASP/" .
 
 <https://bio.tools/rasp-rna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0099,
         edam:topic_0621,
@@ -399292,18 +420923,18 @@ RASP (RNA Alatas of Structure Probing) is a transcriptome-scale RNA structure pr
 
 <https://bio.tools/rasqual> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ],
+            sc:additionalType "http://edamontology.org/data_3112" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Gene expression matrix" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3112" ;
-            sc:name "Gene expression matrix" ;
-            sc:sameAs "http://edamontology.org/data_3112" ] ;
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence variations" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0920" ;
-            sc:name "Genotype/phenotype report" ;
-            sc:sameAs "http://edamontology.org/data_0920" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0920" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Genotype/phenotype report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0622,
@@ -399326,7 +420957,7 @@ RASP (RNA Alatas of Structure Probing) is a transcriptome-scale RNA structure pr
     biotools:primaryContact "GitHub Issues" .
 
 <https://bio.tools/rass> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0097,
@@ -399349,7 +420980,7 @@ RASP (RNA Alatas of Structure Probing) is a transcriptome-scale RNA structure pr
     biotools:primaryContact "RASS support" .
 
 <https://bio.tools/rast> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3293 ;
@@ -399365,7 +420996,7 @@ RASP (RNA Alatas of Structure Probing) is a transcriptome-scale RNA structure pr
     biotools:primaryContact "R.K. Aziz" .
 
 <https://bio.tools/rasta-bacteria> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0654,
@@ -399383,7 +421014,7 @@ RASP (RNA Alatas of Structure Probing) is a transcriptome-scale RNA structure pr
         "Frédérique Hubler" .
 
 <https://bio.tools/raster3d> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_2275,
@@ -399400,7 +421031,7 @@ RASP (RNA Alatas of Structure Probing) is a transcriptome-scale RNA structure pr
     sc:url "http://skuld.bmsc.washington.edu/raster3d/raster3d.html" .
 
 <https://bio.tools/rasterdiv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_3293,
         edam:topic_3306,
@@ -399416,13 +421047,13 @@ rasterdiv is a package for the R statistical software and environment. It aims t
     sc:url "https://github.com/mattmar/rasterdiv" .
 
 <https://bio.tools/rasusa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "Produces an unbiased subsample of your reads" ;
     sc:name "rasusa" ;
     sc:url "https://github.com/mbhall88/rasusa" .
 
 <https://bio.tools/rat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_3382,
         edam:topic_3500 ;
@@ -399437,7 +421068,7 @@ RAT is a low-cost system to track and report mouse activity while they are conta
     sc:url "https://hackaday.io/project/162481-rodent-arena-tracker-rat" .
 
 <https://bio.tools/ratatosk> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_2885,
         edam:topic_3673 ;
@@ -399457,7 +421088,7 @@ Ratatosk is a phased error correction tool for erroneous long reads based on com
     sc:url "https://github.com/DecodeGenetics/Ratatosk" .
 
 <https://bio.tools/ratemirs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0659,
         edam:topic_3170,
@@ -399477,7 +421108,7 @@ RATEmiRs- a database of rat microRNA-Seq data in several tissues. "Data Driven"
     sc:url "https://www.niehs.nih.gov/ratemirs/" .
 
 <https://bio.tools/ratiometric-fret> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3318,
@@ -399493,7 +421124,7 @@ RATEmiRs- a database of rat microRNA-Seq data in several tissues. "Data Driven"
     biotools:primaryContact "Jakub Nedbal" .
 
 <https://bio.tools/ratlesnetv2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library",
         "Workflow" ;
@@ -399512,7 +421143,7 @@ RatLesNetv2 is a convolutional neural network implemented in Python+Pytorch to s
     sc:url "https://github.com/jmlipman/RatLesNetv2" .
 
 <https://bio.tools/ratrav> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2259,
@@ -399531,7 +421162,7 @@ RatLesNetv2 is a convolutional neural network implemented in Python+Pytorch to s
     biotools:primaryContact "Paul A Bates" .
 
 <https://bio.tools/ratspub> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0218,
         edam:topic_3172,
@@ -399554,7 +421185,7 @@ RatsPub answers this question by searching PubMed to find sentences containing t
     sc:url "https://github.com/chen42/ratspub" .
 
 <https://bio.tools/ratt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0654 ;
@@ -399572,7 +421203,7 @@ RatsPub answers this question by searching PubMed to find sentences containing t
     sc:url "http://ratt.sourceforge.net/" .
 
 <https://bio.tools/rattle> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3168,
         edam:topic_3308 ;
@@ -399583,8 +421214,52 @@ RatsPub answers this question by searching PubMed to find sentences containing t
     sc:url "https://github.com/comprna/RATTLE" ;
     biotools:primaryContact "Eduardo Eyras" .
 
+<https://bio.tools/rattnetfold> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0082,
+        edam:topic_0130,
+        edam:topic_0736,
+        edam:topic_3473,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1016/J.AB.2022.114695>,
+        "pubmed:35487269" ;
+    sc:description "Performing protein fold recognition by exploiting a stack convolutional neural network with the attention mechanism." ;
+    sc:featureList edam:operation_0253,
+        edam:operation_0303,
+        edam:operation_0474 ;
+    sc:isAccessibleForFree true ;
+    sc:name "RattnetFold" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://csbio.njust.edu.cn/bioinf/rattnetfold/" .
+
+<https://bio.tools/ravaq> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0769,
+        edam:topic_3168 ;
+    sc:citation <https://doi.org/10.1002/GEPI.22450>,
+        "pubmed:35419876" ;
+    sc:description "An integrative pipeline from quality control to region-based rare variant association analysis." ;
+    sc:featureList edam:operation_2428,
+        edam:operation_3197 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "RAVAQ" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://gitlab.com/gmarenne/ravaq/-/blob/master/doc/RAVAQ_vignette.pdf> ;
+    sc:url "https://gitlab.com/gmarenne/ravaq" .
+
 <https://bio.tools/rave> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3304,
         edam:topic_3382,
         edam:topic_3474 ;
@@ -399600,7 +421275,7 @@ For all RAVE info, including installation instructions, visit https://openwetwar
     sc:url "https://github.com/beauchamplab/rave" .
 
 <https://bio.tools/raven> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0622,
         edam:topic_3673 ;
@@ -399617,26 +421292,26 @@ Raven is a de novo genome assembler for long uncorrected reads.""" ;
 
 <https://bio.tools/raven_toolbox> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3112" ;
-            sc:name "Gene expression matrix" ;
-            sc:sameAs "http://edamontology.org/data_3112" ],
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_1208" ;
+            sc:name "Protein sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ],
+            sc:additionalType "http://edamontology.org/data_3112" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Gene expression matrix" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:encodingFormat "http://edamontology.org/format_3620" ;
+            sc:name "Pathway or network" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3722" ;
-            sc:name "Physiology parameter" ;
-            sc:sameAs "http://edamontology.org/data_3722" ],
+            sc:additionalType "http://edamontology.org/data_3722" ;
+            sc:encodingFormat "http://edamontology.org/format_1957" ;
+            sc:name "Physiology parameter" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:encodingFormat "http://edamontology.org/format_3620" ;
+            sc:name "Pathway or network" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Script" ;
     sc:applicationSubCategory edam:topic_0602,
@@ -399663,14 +421338,14 @@ Raven is a de novo genome assembler for long uncorrected reads.""" ;
 
 <https://bio.tools/raw2mzdb> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3244" ;
+            sc:name "Mass spectrometry spectra" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3621" ;
+            sc:name "Mass spectrometry spectra" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121 ;
     sc:author "Alexandre Burel",
@@ -399690,7 +421365,8 @@ Raven is a de novo genome assembler for long uncorrected reads.""" ;
     biotools:primaryContact "Alexandre Burel" .
 
 <https://bio.tools/rawMSA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_3174,
         edam:topic_3474 ;
@@ -399701,11 +421377,14 @@ Raven is a de novo genome assembler for long uncorrected reads.""" ;
     sc:featureList edam:operation_0267,
         edam:operation_0476,
         edam:operation_0492 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
     sc:name "rawMSA" ;
+    sc:operatingSystem "Linux" ;
     sc:url "https://bitbucket.org/clami66/rawmsa" .
 
 <https://bio.tools/rawbeans> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -399721,8 +421400,30 @@ Raven is a de novo genome assembler for long uncorrected reads.""" ;
     sc:name "RawBeans" ;
     sc:url "https://bitbucket.org/incpm/prot-qc/downloads/" .
 
+<https://bio.tools/rawhummus> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0121,
+        edam:topic_0153,
+        edam:topic_3172,
+        edam:topic_3520 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC040>,
+        "pubmed:35080628" ;
+    sc:description "An R Shiny app for assessing LC–MS system performance by visualising instrument log files and monitoring raw quality control samples within a project." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3218,
+        edam:operation_3627 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "RawHummus" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://cran.r-project.org/web/packages/RawHummus/RawHummus.pdf> ;
+    sc:url "https://bcdd.shinyapps.io/RawHummus/" .
+
 <https://bio.tools/rawr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0196,
         edam:topic_3520 ;
@@ -399739,7 +421440,7 @@ Please install the latest release from https://github.com/fgcz/rawR/releases acc
     sc:url "https://github.com/fgcz/rawR" .
 
 <https://bio.tools/rawrr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0769,
@@ -399760,14 +421461,14 @@ R interface for Thermo Fisher Scientific raw files branched from rawDiag. This p
 
 <https://bio.tools/rawtools> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3712" ;
+            sc:name "Mass spectrometry spectra" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Mass spectrometry spectra" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -399787,7 +421488,7 @@ R interface for Thermo Fisher Scientific raw files branched from rawDiag. This p
     sc:url "https://github.com/kevinkovalchik/RawTools" .
 
 <https://bio.tools/rawvegetable> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
         edam:topic_0154,
@@ -399804,12 +421505,14 @@ RawVegetable requires Thermo mass spectrometer RAW files, *.mzML or Agilent file
     sc:url "http://patternlabforproteomics.org/rawvegetable" .
 
 <https://bio.tools/raxml> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3293 ;
-    sc:citation <https://doi.org/10.1093/bioinformatics/btu033> ;
+    sc:citation <https://doi.org/10.1093/bioinformatics/btl446>,
+        <https://doi.org/10.1093/bioinformatics/btu033>,
+        "pubmed:16928733" ;
     sc:description "A tool for Phylogenetic Analysis and Post-Analysis of Large Phylogenies." ;
     sc:featureList edam:operation_0324,
         edam:operation_2403 ;
@@ -399821,7 +421524,7 @@ RawVegetable requires Thermo mass spectrometer RAW files, *.mzML or Agilent file
     sc:url "http://sco.h-its.org/exelixis/web/software/raxml/" .
 
 <https://bio.tools/ray> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3070 ;
     sc:author "Sébastien Boisvert" ;
@@ -399852,7 +421555,7 @@ RawVegetable requires Thermo mass spectrometer RAW files, *.mzML or Agilent file
     biotools:primaryContact "Animesh Sharma" .
 
 <https://bio.tools/raytracing> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3318,
@@ -399869,7 +421572,7 @@ This code aims to provide a simple ray tracing module for calculating various pr
     sc:url "https://github.com/DCC-Lab/RayTracing" .
 
 <https://bio.tools/razers> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102 ;
     sc:citation "pubmed:19592482" ;
@@ -399887,7 +421590,7 @@ This code aims to provide a simple ray tracing module for calculating various pr
         "David Weese" .
 
 <https://bio.tools/razers3> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description """RazerS 3 is a tool for mapping millions of short genomic reads onto a
 reference genome. It was designed with focus on mapping next-generation
 sequencing reads onto whole DNA genomes. RazerS 3 searches for matches of
@@ -399897,7 +421600,7 @@ detects alignments with mismatches as well as gaps.""" ;
     sc:url "https://github.com/seqan/seqan/tree/master/apps/razers3" .
 
 <https://bio.tools/razor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0621,
         edam:topic_2840,
@@ -399918,7 +421621,7 @@ Razor detects signal peptide in the given sequence. If signal peptide is found,
     sc:url "https://tisigner.com/razor" .
 
 <https://bio.tools/rb-pred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0634,
@@ -399935,11 +421638,11 @@ Razor detects signal peptide in the given sequence. If signal peptide is found,
         "Mac",
         "Windows" ;
     sc:softwareHelp <http://crdd.osdd.net/raghava/rbpred/home.html> ;
-    sc:url "http://www.imtech.res.in/raghava/rbpred/" ;
+    sc:url "http://webs.iiitd.edu.in/raghava/rbpred/" ;
     biotools:primaryContact "Dr. G.P.S. Raghava" .
 
 <https://bio.tools/rbamtools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0097,
@@ -399958,14 +421661,12 @@ to the samtools C-library for BAM file processing.""" ;
 
 <https://bio.tools/rbbt-hts> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:name "Sequence alignment" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:name "Sequence variations" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "Workflow for variant calling and other functionalities" ;
     sc:featureList edam:operation_3182,
         edam:operation_3227 ;
@@ -399974,7 +421675,7 @@ to the samtools C-library for BAM file processing.""" ;
     sc:url "https://github.com/Rbbt-Workflows/HTS" .
 
 <https://bio.tools/rbcbook1> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0218 ;
@@ -399992,7 +421693,7 @@ to the samtools C-library for BAM file processing.""" ;
     biotools:primaryContact "Vince Carey" .
 
 <https://bio.tools/rbceq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2830,
@@ -400014,7 +421715,7 @@ RBCeq is an integrated bioinformatics webserver to characterize blood group prof
     sc:url "https://www.rbceq.org/" .
 
 <https://bio.tools/rbcnet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_2229,
         edam:topic_3063,
@@ -400033,7 +421734,7 @@ Computer-assisted algorithms have become a mainstay of biomedical applications t
     sc:url "https://github.com/nlm-malaria/RBCNet" .
 
 <https://bio.tools/rbde> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0166,
@@ -400051,7 +421752,7 @@ Computer-assisted algorithms have become a mainstay of biomedical applications t
     sc:url "http://icb.med.cornell.edu/crt/RbDe/index.xml" .
 
 <https://bio.tools/rbgl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3071 ;
@@ -400069,7 +421770,7 @@ Computer-assisted algorithms have become a mainstay of biomedical applications t
     biotools:primaryContact "BioConductor Package Maintainer" .
 
 <https://bio.tools/rbinds> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Bioinformatics portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
@@ -400095,8 +421796,28 @@ Computer-assisted algorithms have become a mainstay of biomedical applications t
     sc:softwareHelp <http://zhaoserver.com.cn/RBinds/RBinds.html> ;
     sc:url "http://zhaoserver.com.cn/RBinds/RBinds.html" .
 
+<https://bio.tools/rbioapi> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_3071,
+        edam:topic_3372 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC172>,
+        "pubmed:35323899" ;
+    sc:description "User-Friendly R Interface to Biologic Web Services' API." ;
+    sc:featureList edam:operation_0224,
+        edam:operation_3431,
+        edam:operation_3501 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "rbioapi" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://cran.r-project.org/web/packages/rbioapi/rbioapi.pdf> ;
+    sc:url "https://rbioapi.moosa-r.com" .
+
 <https://bio.tools/rbioinf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -400119,7 +421840,7 @@ Computer-assisted algorithms have become a mainstay of biomedical applications t
     biotools:primaryContact "Robert Gentleman" .
 
 <https://bio.tools/rbiomirgs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0659,
@@ -400136,7 +421857,7 @@ Computer-assisted algorithms have become a mainstay of biomedical applications t
     biotools:primaryContact "Kenneth B. Storey" .
 
 <https://bio.tools/rbiopaxparser> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3071 ;
@@ -400155,7 +421876,7 @@ Computer-assisted algorithms have become a mainstay of biomedical applications t
     biotools:primaryContact "Frank Kramer" .
 
 <https://bio.tools/rbm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3170,
@@ -400174,7 +421895,7 @@ Computer-assisted algorithms have become a mainstay of biomedical applications t
     biotools:primaryContact "Dongmei Li" .
 
 <https://bio.tools/rbmr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_2269,
@@ -400191,14 +421912,14 @@ Computer-assisted algorithms have become a mainstay of biomedical applications t
 
 <https://bio.tools/rboAnalyzer> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3495" ;
-            sc:name "RNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3495" ] ;
+            sc:additionalType "http://edamontology.org/data_3495" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "RNA sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2955" ;
-            sc:name "Sequence report" ;
-            sc:sameAs "http://edamontology.org/data_2955" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2955" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Sequence report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0659 ;
@@ -400221,7 +421942,7 @@ Computer-assisted algorithms have become a mainstay of biomedical applications t
     biotools:primaryContact "Jiří Vohradský" .
 
 <https://bio.tools/rbo_aleph> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_2275,
@@ -400241,18 +421962,18 @@ Computer-assisted algorithms have become a mainstay of biomedical applications t
 
 <https://bio.tools/rbowtie> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1383" ;
-            sc:name "Sequence alignment (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1383" ] ;
+            sc:additionalType "http://edamontology.org/data_1383" ;
+            sc:encodingFormat "http://edamontology.org/format_1957" ;
+            sc:name "Sequence alignment (nucleic acid)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1383" ;
-            sc:name "Sequence alignment (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1383" ],
+            sc:additionalType "http://edamontology.org/data_0867" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
+            sc:name "Sequence alignment report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0867" ;
-            sc:name "Sequence alignment report" ;
-            sc:sameAs "http://edamontology.org/data_0867" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1383" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
+            sc:name "Sequence alignment (nucleic acid)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3053,
@@ -400272,7 +421993,7 @@ Computer-assisted algorithms have become a mainstay of biomedical applications t
     biotools:primaryContact "Michael Stadler" .
 
 <https://bio.tools/rbowtie2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/bty141> ;
@@ -400288,8 +422009,31 @@ Computer-assisted algorithms have become a mainstay of biomedical applications t
     sc:url "http://bioconductor.org/packages/release/bioc/html/Rbowtie2.html" ;
     biotools:primaryContact "Zheng Wei" .
 
+<https://bio.tools/rbp-tstl> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0099,
+        edam:topic_0128,
+        edam:topic_2269,
+        edam:topic_3297,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1093/BIB/BBAC215>,
+        "pmcid:PMC9294422",
+        "pubmed:35649392" ;
+    sc:description "RBP-TSTL is a two-stage transfer learning framework for genome-scale prediction of RNA-binding proteins." ;
+    sc:featureList edam:operation_3900,
+        edam:operation_3901,
+        edam:operation_3902 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Apache-2.0" ;
+    sc:name "RBP-TSTL" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/Xinxinatg/RBP-TSTL/" .
+
 <https://bio.tools/rbp2go> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0099,
         edam:topic_0121,
@@ -400306,8 +422050,34 @@ RBP2GO is a comprehensive database dedicated to the analysis of RNA-binding prot
     sc:name "RBP2GO" ;
     sc:url "https://RBP2GO.DKFZ.de" .
 
+<https://bio.tools/rbpbind> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_3495" ;
+            sc:name "RNA sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0082,
+        edam:topic_0097,
+        edam:topic_0099,
+        edam:topic_0128,
+        edam:topic_3542 ;
+    sc:citation <https://doi.org/10.1016/J.JMB.2022.167515>,
+        "pubmed:35662470" ;
+    sc:description "Quantitative Prediction of Protein-RNA Interactions." ;
+    sc:featureList edam:operation_0278,
+        edam:operation_0502,
+        edam:operation_2441,
+        edam:operation_3901,
+        edam:operation_3902 ;
+    sc:isAccessibleForFree true ;
+    sc:name "RBPBind" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://bioserv.mps.ohio-state.edu/RBPBind/" .
+
 <https://bio.tools/rbpcnn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_0749,
         edam:topic_3320,
@@ -400324,7 +422094,7 @@ RBP2GO is a comprehensive database dedicated to the analysis of RNA-binding prot
     sc:url "https://home.jbnu.ac.kr/NSCL/RBPCNN.htm" .
 
 <https://bio.tools/rbpdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0736,
@@ -400346,7 +422116,7 @@ RBP2GO is a comprehensive database dedicated to the analysis of RNA-binding prot
     biotools:primaryContact "RBPDB Support" .
 
 <https://bio.tools/rbpdl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0154,
@@ -400363,7 +422133,7 @@ RBP2GO is a comprehensive database dedicated to the analysis of RNA-binding prot
     sc:url "https://github.com/nmt315320/rBPDL" .
 
 <https://bio.tools/rbpmap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3125,
@@ -400388,7 +422158,7 @@ RBP2GO is a comprehensive database dedicated to the analysis of RNA-binding prot
     biotools:primaryContact "Yael Mandel Gutfreund's lab" .
 
 <https://bio.tools/rbpmotif> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -400409,8 +422179,24 @@ RBP2GO is a comprehensive database dedicated to the analysis of RNA-binding prot
     sc:url "http://www.rnamotif.org" ;
     biotools:primaryContact "Quaid Morris" .
 
+<https://bio.tools/rbpred> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:citation <https://doi.org/10.1186/1471-2105-7-485>,
+        "pmcid:PMC1647291",
+        "pubmed:17083731" ;
+    sc:description "‘RB-Pred’ web-based server, a first of its kind worldwide, is an attempt for forecasting leaf blast severity based on the weather variables which may help the farmers and plant pathologists in timely prediction of rice blast in their areas." ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "rbpred" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/rbpred/home.html> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/rbpred/home.html" .
+
 <https://bio.tools/rbpspot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0602,
@@ -400431,7 +422217,7 @@ RBP2GO is a comprehensive database dedicated to the analysis of RNA-binding prot
     sc:url "https://github.com/SCBB-LAB/RBPSpot" .
 
 <https://bio.tools/rbpsuite> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0160,
         edam:topic_3474,
@@ -400447,7 +422233,7 @@ RBP2GO is a comprehensive database dedicated to the analysis of RNA-binding prot
     sc:url "http://www.csbio.sjtu.edu.cn/bioinf/RBPsuite/" .
 
 <https://bio.tools/rbptd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0099,
         edam:topic_0634,
@@ -400464,7 +422250,7 @@ RBP2GO is a comprehensive database dedicated to the analysis of RNA-binding prot
     sc:url "http://www.rbptd.com" .
 
 <https://bio.tools/rbrident> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0659,
@@ -400478,7 +422264,7 @@ RBP2GO is a comprehensive database dedicated to the analysis of RNA-binding prot
     sc:url "http://166.111.152.91/RBRIdent.html" .
 
 <https://bio.tools/rbrothers> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3293,
         edam:topic_3299 ;
@@ -400495,7 +422281,7 @@ RBP2GO is a comprehensive database dedicated to the analysis of RNA-binding prot
     biotools:primaryContact "Vladimir Minin" .
 
 <https://bio.tools/rbscore> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0123,
         edam:topic_3125,
@@ -400511,7 +422297,7 @@ RBP2GO is a comprehensive database dedicated to the analysis of RNA-binding prot
     sc:url "http://ahsoka.u-strasbg.fr/rbscore/" .
 
 <https://bio.tools/rbsurv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3518 ;
@@ -400529,7 +422315,7 @@ RBP2GO is a comprehensive database dedicated to the analysis of RNA-binding prot
     biotools:primaryContact "Soo-heang Eo" .
 
 <https://bio.tools/rc454> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196 ;
     sc:description "Program that takes a set of 454 read and quality files as well as a consensus assembly for those reads and corrects for known 454 error modes such as homopolymer indels and carry forward/incomplete extension (CAFIE)." ;
@@ -400542,7 +422328,7 @@ RBP2GO is a comprehensive database dedicated to the analysis of RNA-binding prot
     sc:url "http://www.broadinstitute.org/scientific-community/science/projects/viral-genomics/rc454" .
 
 <https://bio.tools/rca> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3307,
@@ -400557,7 +422343,7 @@ RBP2GO is a comprehensive database dedicated to the analysis of RNA-binding prot
     sc:url "http://erilllab.umbc.edu/research/software/201-2/" .
 
 <https://bio.tools/rca2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_3170,
@@ -400582,7 +422368,7 @@ RBP2GO is a comprehensive database dedicated to the analysis of RNA-binding prot
     sc:url "https://github.com/prabhakarlab/RCAv2" .
 
 <https://bio.tools/rcade> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -400602,7 +422388,7 @@ RBP2GO is a comprehensive database dedicated to the analysis of RNA-binding prot
     biotools:primaryContact "Jonathan Cairns" .
 
 <https://bio.tools/rcade-recognition> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
@@ -400618,8 +422404,31 @@ RBP2GO is a comprehensive database dedicated to the analysis of RNA-binding prot
     sc:softwareHelp <https://github.com/hsnajafabadi/rcade> ;
     sc:url "http://rcade.ccbr.utoronto.ca/" .
 
+<https://bio.tools/rcandy> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_3127,
+        edam:topic_3168,
+        edam:topic_3293 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAB814>,
+        "pmcid:PMC8826011",
+        "pubmed:34864895" ;
+    sc:description "An R package for visualising homologous recombinations in bacterial genomes." ;
+    sc:featureList edam:operation_0335,
+        edam:operation_0451,
+        edam:operation_0567,
+        edam:operation_3478,
+        edam:operation_3745 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "RCandy" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/ChrispinChaguza/RCandy" .
+
 <https://bio.tools/rcare> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_3170,
@@ -400636,22 +422445,22 @@ RBP2GO is a comprehensive database dedicated to the analysis of RNA-binding prot
 
 <https://bio.tools/rcas> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2012" ;
-            sc:name "Sequence coordinates" ;
-            sc:sameAs "http://edamontology.org/data_2012" ],
+            sc:additionalType "http://edamontology.org/data_2012" ;
+            sc:encodingFormat "http://edamontology.org/format_3585" ;
+            sc:name "Sequence coordinates" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ] ;
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_2306" ;
+            sc:name "Annotation track" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ],
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3754" ;
-            sc:name "GO-term enrichment data" ;
-            sc:sameAs "http://edamontology.org/data_3754" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3754" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "GO-term enrichment data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library",
         "Workflow" ;
@@ -400683,14 +422492,14 @@ RBP2GO is a comprehensive database dedicated to the analysis of RNA-binding prot
 
 <https://bio.tools/rcaspar> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3111" ;
-            sc:name "Processed microarray data" ;
-            sc:sameAs "http://edamontology.org/data_3111" ] ;
+            sc:additionalType "http://edamontology.org/data_3111" ;
+            sc:encodingFormat "http://edamontology.org/format_1638" ;
+            sc:name "Processed microarray data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -400713,7 +422522,7 @@ RBP2GO is a comprehensive database dedicated to the analysis of RNA-binding prot
         "Lars Kaderali" .
 
 <https://bio.tools/rcat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3070,
@@ -400732,20 +422541,39 @@ RBP2GO is a comprehensive database dedicated to the analysis of RNA-binding prot
     sc:operatingSystem "Windows" ;
     sc:url "https://github.com/lzbbest/Rhythmic-Component-Analysis-Tool" .
 
+<https://bio.tools/rcdpeaks> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0091,
+        edam:topic_0176 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC021>,
+        "pubmed:35020783" ;
+    sc:description "Memory-Efficient Density Peaks Clustering of Long Molecular Dynamics." ;
+    sc:featureList edam:operation_0244,
+        edam:operation_2476,
+        edam:operation_3432 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "RCDPeaks" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/LQCT/RCDPeaks.git" .
+
 <https://bio.tools/rcellminer> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0990" ;
-            sc:name "Compound name" ;
-            sc:sameAs "http://edamontology.org/data_0990" ] ;
+            sc:additionalType "http://edamontology.org/data_0990" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Compound name" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0993" ;
-            sc:name "Drug identifier" ;
-            sc:sameAs "http://edamontology.org/data_0993" ],
+            sc:additionalType "http://edamontology.org/data_2899" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Drug name" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2899" ;
-            sc:name "Drug name" ;
-            sc:sameAs "http://edamontology.org/data_2899" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0993" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Drug identifier" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0622,
@@ -400770,7 +422598,7 @@ RBP2GO is a comprehensive database dedicated to the analysis of RNA-binding prot
         "Vinodh Rajapakse" .
 
 <https://bio.tools/rcgatoolbox> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0602,
@@ -400789,14 +422617,14 @@ RCGAToolbox is a MATLAB toolbox that contains two real-coded genetic algorithms
 
 <https://bio.tools/rcgh> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3110" ;
-            sc:name "Raw microarray data" ;
-            sc:sameAs "http://edamontology.org/data_3110" ] ;
+            sc:additionalType "http://edamontology.org/data_3110" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Raw microarray data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3111" ;
-            sc:name "Processed microarray data" ;
-            sc:sameAs "http://edamontology.org/data_3111" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3111" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Processed microarray data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3518,
@@ -400816,18 +422644,18 @@ RCGAToolbox is a MATLAB toolbox that contains two real-coded genetic algorithms
 
 <https://bio.tools/rchemcpp> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1463" ;
-            sc:name "Small molecule structure" ;
-            sc:sameAs "http://edamontology.org/data_1463" ] ;
+            sc:additionalType "http://edamontology.org/data_1463" ;
+            sc:encodingFormat "http://edamontology.org/format_2035" ;
+            sc:name "Small molecule structure" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2082" ;
-            sc:name "Matrix" ;
-            sc:sameAs "http://edamontology.org/data_2082" ],
+            sc:additionalType "http://edamontology.org/data_2082" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Matrix" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1636" ;
-            sc:name "Heat map" ;
-            sc:sameAs "http://edamontology.org/data_1636" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1636" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Heat map" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -400847,7 +422675,7 @@ RCGAToolbox is a MATLAB toolbox that contains two real-coded genetic algorithms
     biotools:primaryContact <http://orcid.org/0000-0003-2861-5552> .
 
 <https://bio.tools/rchyoptimyx> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2229 ;
@@ -400866,7 +422694,7 @@ RCGAToolbox is a MATLAB toolbox that contains two real-coded genetic algorithms
         "Nima Aghaeepour" .
 
 <https://bio.tools/rci> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0176,
@@ -400883,7 +422711,7 @@ RCGAToolbox is a MATLAB toolbox that contains two real-coded genetic algorithms
     sc:url "http://wishart.biology.ualberta.ca/rci/cgi-bin/rci_cgi_1_d.py" .
 
 <https://bio.tools/rcirc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0203,
         edam:topic_3170,
@@ -400899,7 +422727,7 @@ Rcirc helps to identify the coding ability of circRNA and visualize the feature
     sc:url "https://github.com/PSSUN/Rcirc" .
 
 <https://bio.tools/rcistarget> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_3308 ;
@@ -400918,7 +422746,7 @@ Rcirc helps to identify the coding ability of circRNA and visualize the feature
     biotools:primaryContact "Sara Aibar" .
 
 <https://bio.tools/rck> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0654,
         edam:topic_2640,
@@ -400942,7 +422770,7 @@ RCK - is a method for Reconstruction of clone- and haplotype-specific Cancer Kar
     sc:url "https://github.com/raphael-group/RCK" .
 
 <https://bio.tools/rclick> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0099,
@@ -400958,7 +422786,7 @@ RCK - is a method for Reconstruction of clone- and haplotype-specific Cancer Kar
     sc:url "http://mspc.bii.a-star.edu.sg/minhn/rclick.html" .
 
 <https://bio.tools/rcnet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -400975,7 +422803,7 @@ RCK - is a method for Reconstruction of clone- and haplotype-specific Cancer Kar
     sc:url "http://phegenex-umh.cs.umn.edu:8080/PheGenEx/" .
 
 <https://bio.tools/rcnn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3384,
         edam:topic_3404,
@@ -400987,7 +422815,7 @@ RCK - is a method for Reconstruction of clone- and haplotype-specific Cancer Kar
     sc:url "http://rcnn.modelderm.com" .
 
 <https://bio.tools/rcompadre> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_0780,
@@ -401002,7 +422830,7 @@ RCK - is a method for Reconstruction of clone- and haplotype-specific Cancer Kar
     biotools:primaryContact <https://orcid.org/0000-0001-5720-4686> .
 
 <https://bio.tools/rcorrector> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_3168,
@@ -401017,7 +422845,7 @@ RCK - is a method for Reconstruction of clone- and haplotype-specific Cancer Kar
     sc:url "https://github.com/mourisl/Rcorrector/" .
 
 <https://bio.tools/rcos> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0659,
@@ -401033,7 +422861,7 @@ RCK - is a method for Reconstruction of clone- and haplotype-specific Cancer Kar
     sc:url "http://bioinfo.cs.technion.ac.il/people/zohar/RCoS/" .
 
 <https://bio.tools/rcount> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0160,
@@ -401050,22 +422878,22 @@ RCK - is a method for Reconstruction of clone- and haplotype-specific Cancer Kar
 
 <https://bio.tools/rcpi> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1463" ;
-            sc:name "Small molecule structure" ;
-            sc:sameAs "http://edamontology.org/data_1463" ],
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_1196" ;
+            sc:name "Protein sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
+            sc:additionalType "http://edamontology.org/data_1463" ;
+            sc:encodingFormat "http://edamontology.org/format_1196" ;
+            sc:name "Small molecule structure" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ],
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "Plot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2854" ;
-            sc:name "Position-specific scoring matrix" ;
-            sc:sameAs "http://edamontology.org/data_2854" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2854" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "Position-specific scoring matrix" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0078,
@@ -401084,8 +422912,33 @@ RCK - is a method for Reconstruction of clone- and haplotype-specific Cancer Kar
     sc:url "http://bioconductor.org/packages/release/bioc/html/Rcpi.html" ;
     biotools:primaryContact <http://orcid.org/0000-0002-0250-5673> .
 
+<https://bio.tools/rcsb_pdb> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0820,
+        edam:topic_0821,
+        edam:topic_2814,
+        edam:topic_3510 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAB813>,
+        "pmcid:PMC8826025",
+        "pubmed:34864908" ;
+    sc:description "Improved Annotation, Search, and Visualization of Membrane Protein Structures Archived in the PDB." ;
+    sc:featureList edam:operation_0310,
+        edam:operation_0337,
+        edam:operation_2421,
+        edam:operation_3431,
+        edam:operation_3767 ;
+    sc:isAccessibleForFree true ;
+    sc:name "RCSB Protein Data Bank" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <http://data.rcsb.org> ;
+    sc:url "http://rcsb.org" .
+
 <https://bio.tools/rcsb_pdb_mobile> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_2275,
@@ -401098,7 +422951,7 @@ RCK - is a method for Reconstruction of clone- and haplotype-specific Cancer Kar
     sc:url "http://www.rcsb.org/pdb/static.do?p=mobile/RCSBapp.html" .
 
 <https://bio.tools/rcsl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3170,
@@ -401114,7 +422967,7 @@ RCK - is a method for Reconstruction of clone- and haplotype-specific Cancer Kar
         <https://orcid.org/0000-0003-4636-3440> .
 
 <https://bio.tools/rctd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3170,
         edam:topic_3308 ;
@@ -401130,7 +422983,7 @@ Robust Cell Type Decomposition (RCTD).""" ;
     sc:url "https://github.com/dmcable/RCTD" .
 
 <https://bio.tools/rcwlpipelines-rcwl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0769,
@@ -401147,8 +423000,27 @@ Robust Cell Type Decomposition (RCTD).""" ;
     biotools:primaryContact <https://orcid.org/0000-0003-1456-5099>,
         "Qiang Hu" .
 
+<https://bio.tools/rcx> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0091,
+        edam:topic_0203,
+        edam:topic_0602 ;
+    sc:citation <https://doi.org/10.1101/2021.10.26.466001> ;
+    sc:description "RCX – an R package adapting the Cytoscape Exchange format for biological networks." ;
+    sc:featureList edam:operation_2422,
+        edam:operation_3435,
+        edam:operation_3925 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "RCX" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/frankkramer-lab/RCX" .
+
 <https://bio.tools/rcy3> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0602 ;
     sc:citation <https://doi.org/10.12688/f1000research.6767.1> ;
@@ -401168,7 +423040,7 @@ Robust Cell Type Decomposition (RCTD).""" ;
         "Tanja Muetze" .
 
 <https://bio.tools/rcyjs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2229 ;
@@ -401186,7 +423058,7 @@ Robust Cell Type Decomposition (RCTD).""" ;
     biotools:primaryContact "Paul Shannon" .
 
 <https://bio.tools/rcytoscape> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2229 ;
@@ -401207,7 +423079,7 @@ Robust Cell Type Decomposition (RCTD).""" ;
     biotools:primaryContact "Paul Shannon" .
 
 <https://bio.tools/rd-connect> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_3063,
@@ -401228,15 +423100,17 @@ Robust Cell Type Decomposition (RCTD).""" ;
     biotools:primaryContact "Libby Wood" .
 
 <https://bio.tools/rd-connect_platform> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3063,
         edam:topic_3325,
         edam:topic_3473 ;
-    sc:citation <https://doi.org/10.1007/s11606-014-2908-8>,
+    sc:citation <https://doi.org/10.1002/humu.24353>,
+        <https://doi.org/10.1007/s11606-014-2908-8>,
         "pmcid:PMC4124112",
-        "pubmed:25029978" ;
+        "pubmed:25029978",
+        "pubmed:35178824" ;
     sc:description "An online tool for diagnosis and gene discovery in rare disease research. The platform features allow identifying disease-causing mutations in rare disease patients and linking them with detailed clinical information." ;
     sc:featureList edam:operation_2403,
         edam:operation_2422,
@@ -401249,7 +423123,7 @@ Robust Cell Type Decomposition (RCTD).""" ;
     sc:url "https://platform.rd-connect.eu/" .
 
 <https://bio.tools/rd-connect_sample_catalogue> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_3063,
@@ -401278,7 +423152,7 @@ It also provides information about sample collections and studies done on the re
     sc:url "https://samples.rd-connect.eu/" .
 
 <https://bio.tools/rdaccahp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_3315 ;
@@ -401293,7 +423167,7 @@ It also provides information about sample collections and studies done on the re
     biotools:primaryContact <https://orcid.org/0000-0002-0279-8816> .
 
 <https://bio.tools/rdad> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3325,
@@ -401311,7 +423185,7 @@ DNA sequencing has allowed for the discovery of the genetic cause for a consider
     sc:url "http://www.unimd.org/RDAD/" .
 
 <https://bio.tools/rdavidwebservice> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3077 ;
@@ -401331,7 +423205,7 @@ DNA sequencing has allowed for the discovery of the genetic cause for a consider
     biotools:primaryContact "Cristobal Fresno" .
 
 <https://bio.tools/rdb2c2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0154,
         edam:topic_0749,
@@ -401352,8 +423226,31 @@ A fully featured admin theme which can be used to build CRM, CMS, etc.""" ;
     sc:name "RDb2C2" ;
     sc:url "http://structpred.life.tsinghua.edu.cn/rdb2c2.html" .
 
+<https://bio.tools/rdbke> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_2640,
+        edam:topic_2885,
+        edam:topic_3175,
+        edam:topic_3474,
+        edam:topic_3673 ;
+    sc:citation <https://doi.org/10.1371/JOURNAL.PCBI.1009186>,
+        "pmcid:PMC8504719",
+        "pubmed:34634042" ;
+    sc:description "RDBKE is a breakpoint enhancment pipeline for read-depth (RD) based SV callers using deep segmenation model UNet" ;
+    sc:featureList edam:operation_2426,
+        edam:operation_3196,
+        edam:operation_3359 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "RDBKE" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/yaozhong/deepIntraSV" .
+
 <https://bio.tools/rdc-panda> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0593,
@@ -401370,7 +423267,7 @@ A fully featured admin theme which can be used to build CRM, CMS, etc.""" ;
     sc:url "http://www.cs.duke.edu/donaldlab/rdcpanda.php" .
 
 <https://bio.tools/rddchecker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0654,
@@ -401383,7 +423280,7 @@ A fully featured admin theme which can be used to build CRM, CMS, etc.""" ;
     sc:url "http://ccb.jhu.edu/software/rddChecker/index.shtml" .
 
 <https://bio.tools/rddpred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_3170,
@@ -401399,7 +423296,7 @@ A fully featured admin theme which can be used to build CRM, CMS, etc.""" ;
     sc:url "http://epigenomics.snu.ac.kr/RDDpred/" .
 
 <https://bio.tools/rdf2json> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2885,
         edam:topic_3297,
@@ -401418,7 +423315,7 @@ A desktop application for transform RDF files to JSON files.""" ;
     sc:url "https://github.com/lyotvincent/rdf2json" .
 
 <https://bio.tools/rdfscape> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_2259,
@@ -401435,7 +423332,7 @@ A desktop application for transform RDF files to JSON files.""" ;
     sc:url "http://www.bioinformatics.org/rdfscape/wiki/" .
 
 <https://bio.tools/rdgidb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3336,
@@ -401455,7 +423352,7 @@ A desktop application for transform RDF files to JSON files.""" ;
     biotools:primaryContact "Thomas Thurnherr" .
 
 <https://bio.tools/rdiff> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3308,
@@ -401473,7 +423370,7 @@ A desktop application for transform RDF files to JSON files.""" ;
         "Philipp Boss" .
 
 <https://bio.tools/rdisop> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3520 ;
@@ -401493,7 +423390,7 @@ A desktop application for transform RDF files to JSON files.""" ;
     biotools:primaryContact "Steffen Neumann" .
 
 <https://bio.tools/rdmap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0602,
         edam:topic_0625,
@@ -401511,7 +423408,7 @@ Disease NameDisorder IDOrpha Code.""" ;
     sc:url "http://rdmap.nbscn.org" .
 
 <https://bio.tools/rdmc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_3056,
         edam:topic_3796 ;
@@ -401530,7 +423427,7 @@ A fully worked example for how to use DMC can be found at dmc_example.md.""" ;
     sc:url "https://github.com/silastittes/rdmc" .
 
 <https://bio.tools/rdml> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_2269,
@@ -401549,7 +423446,7 @@ A fully worked example for how to use DMC can be found at dmc_example.md.""" ;
     biotools:primaryContact "Konstantin A. Blagodatskikh" .
 
 <https://bio.tools/rdmm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0621,
@@ -401568,7 +423465,7 @@ Japanese Rare Disease Models & Mechanisms Network.""" ;
     sc:url "https://j-rdmm.org/" .
 
 <https://bio.tools/rdmp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0219,
         edam:topic_0607,
@@ -401585,7 +423482,7 @@ Japanese Rare Disease Models & Mechanisms Network.""" ;
     biotools:primaryContact "Emily Jefferson" .
 
 <https://bio.tools/rdnaanalyzer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0082,
@@ -401600,7 +423497,7 @@ Japanese Rare Disease Models & Mechanisms Network.""" ;
     sc:url "http://www.cemb.edu.pk/sw.html" .
 
 <https://bio.tools/rdp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0084,
@@ -401620,7 +423517,7 @@ Japanese Rare Disease Models & Mechanisms Network.""" ;
     biotools:primaryContact "RDP Staff" .
 
 <https://bio.tools/rdp5> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0781,
         edam:topic_3127,
@@ -401639,7 +423536,7 @@ Japanese Rare Disease Models & Mechanisms Network.""" ;
     biotools:primaryContact <https://orcid.org/0000-0002-8785-0870> .
 
 <https://bio.tools/rdp_pyrosequencing_pipeline> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_3174 ;
     sc:citation <https://doi.org/10.1093/nar/gkt1244> ;
@@ -401655,7 +423552,7 @@ Japanese Rare Disease Models & Mechanisms Network.""" ;
     biotools:primaryContact "RDP Staff" .
 
 <https://bio.tools/rdrf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0625,
@@ -401681,7 +423578,7 @@ Japanese Rare Disease Models & Mechanisms Network.""" ;
     biotools:primaryContact "RDRF Support" .
 
 <https://bio.tools/rdrtoolbox> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -401701,7 +423598,7 @@ Japanese Rare Disease Models & Mechanisms Network.""" ;
     biotools:primaryContact "Christoph Bartenhagen" .
 
 <https://bio.tools/rdrugtrajectory> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0202,
@@ -401718,7 +423615,7 @@ rdrugtrajectory can produce the data structure necessary to perform a mean cumul
     sc:url "https://github.com/acnash/rdrugtrajectory" .
 
 <https://bio.tools/rdscan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_2885,
@@ -401740,7 +423637,7 @@ rdrugtrajectory can produce the data structure necessary to perform a mean cumul
     sc:url "https://github.com/dbespiatykh/RDscan" .
 
 <https://bio.tools/rdt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0821,
         edam:topic_3292 ;
@@ -401759,7 +423656,7 @@ rdrugtrajectory can produce the data structure necessary to perform a mean cumul
     biotools:primaryContact <http://orcid.org/0000-0002-7602-6675> .
 
 <https://bio.tools/re-annotator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0219,
@@ -401772,8 +423669,32 @@ rdrugtrajectory can produce the data structure necessary to perform a mean cumul
     sc:softwareHelp <https://sourceforge.net/projects/reannotator/> ;
     sc:url "http://sourceforge.net/projects/reannotator/" .
 
+<https://bio.tools/re-goa> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0089,
+        edam:topic_0128,
+        edam:topic_0204,
+        edam:topic_0749,
+        edam:topic_3169 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC185>,
+        "pubmed:35325066" ;
+    sc:description "A tool for non-coding genomic regions functional enrichment analysis based on Regulatory Elements Gene Ontology Annotation (RE-GOA). Resources for RE-GOA in mouse and human are availible." ;
+    sc:featureList edam:operation_1781,
+        edam:operation_2436,
+        edam:operation_2437,
+        edam:operation_3672,
+        edam:operation_3802 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "RE-GOA" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/AMSSwanglab/RE-GOA" .
+
 <https://bio.tools/re-music> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0082,
@@ -401795,8 +423716,31 @@ rdrugtrajectory can produce the data structure necessary to perform a mean cumul
     biotools:primaryContact "Dr. Chin Lung Lu",
         "Dr. Chuan Yi Tang" .
 
+<https://bio.tools/re-place> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_0968" ;
+            sc:name "Keyword" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0749,
+        edam:topic_3386,
+        edam:topic_3500 ;
+    sc:citation <https://doi.org/10.3389/FPHAR.2022.930148>,
+        "pmcid:PMC9257167",
+        "pubmed:35814243" ;
+    sc:description "A Unique Project Collecting Expertise on New Approach Methodologies." ;
+    sc:featureList edam:operation_0224,
+        edam:operation_3454,
+        edam:operation_3455 ;
+    sc:isAccessibleForFree true ;
+    sc:name "RE-Place" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://www.RE-Place.be" .
+
 <https://bio.tools/re-searcher> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0622,
@@ -401816,7 +423760,7 @@ rdrugtrajectory can produce the data structure necessary to perform a mean cumul
     biotools:primaryContact "Ulykbek Kairov" .
 
 <https://bio.tools/rea> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3179 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/bts631> ;
@@ -401830,8 +423774,25 @@ rdrugtrajectory can produce the data structure necessary to perform a mean cumul
     sc:softwareVersion "1.1" ;
     sc:url "http://www.bio.ifi.lmu.de/REA" .
 
+<https://bio.tools/reach> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0199,
+        edam:topic_3334,
+        edam:topic_3379 ;
+    sc:citation <https://doi.org/10.1186/S13023-022-02374-X>,
+        "pmcid:PMC9205086",
+        "pubmed:35710503" ;
+    sc:description "The ReACH registry collected clinical information from 51 pediatric ACH patients during its six years of existence, corresponding to ~ 60% of ACH patients aged 3 months to 14 years that were anticipated to live in the Czechia and Slovak Republic" ;
+    sc:name "ReACH" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://www.achondroplasia-registry.cz" .
+
 <https://bio.tools/reactioncode> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3047,
         edam:topic_3314,
@@ -401848,10 +423809,9 @@ ReactionCode is a new versatile format for searching, analysis, classification,
 
 <https://bio.tools/reactiondataextractor> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:name "Image" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3314,
@@ -401873,7 +423833,7 @@ ReactionCode is a new versatile format for searching, analysis, classification,
     sc:url "http://www.reactiondataextractor.org" .
 
 <https://bio.tools/reactionflow> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0602,
@@ -401889,7 +423849,7 @@ ReactionCode is a new versatile format for searching, analysis, classification,
     sc:url "https://github.com/CreativeCodingLab/ReactionFlow" .
 
 <https://bio.tools/reactome> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3407 ;
@@ -401909,7 +423869,7 @@ ReactionCode is a new versatile format for searching, analysis, classification,
     biotools:primaryContact "Lincoln Stein" .
 
 <https://bio.tools/reactome_graph_database> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0085,
         edam:topic_0602,
@@ -401928,14 +423888,12 @@ ReactionCode is a new versatile format for searching, analysis, classification,
 
 <https://bio.tools/reactome_small_molecule_search> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3490" ;
-            sc:name "Chemical structure sketch" ;
-            sc:sameAs "http://edamontology.org/data_3490" ] ;
+            sc:additionalType "http://edamontology.org/data_3490" ;
+            sc:name "Chemical structure sketch" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0962" ;
-            sc:name "Small molecule report" ;
-            sc:sameAs "http://edamontology.org/data_0962" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0962" ;
+            sc:name "Small molecule report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2258 ;
@@ -401956,7 +423914,7 @@ ReactionCode is a new versatile format for searching, analysis, classification,
     biotools:primaryContact "Janna Hastings" .
 
 <https://bio.tools/reactomefiviz> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0602 ;
     sc:citation <https://doi.org/10.12688/F1000RESEARCH.4431.2>,
@@ -401978,7 +423936,7 @@ ReactionCode is a new versatile format for searching, analysis, classification,
     biotools:primaryContact <http://orcid.org/0000-0001-8196-1177> .
 
 <https://bio.tools/reactomegsa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0602,
         edam:topic_2229,
@@ -402001,22 +423959,22 @@ The ReactomeGSA project supports multi-omics, comparative pathway analyses using
 
 <https://bio.tools/reactomepa> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1027" ;
-            sc:name "Gene ID (NCBI)" ;
-            sc:sameAs "http://edamontology.org/data_1027" ] ;
+            sc:additionalType "http://edamontology.org/data_1027" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Gene ID (NCBI)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1669" ;
-            sc:name "P-value" ;
-            sc:sameAs "http://edamontology.org/data_1669" ],
+            sc:additionalType "http://edamontology.org/data_1669" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "P-value" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0862" ;
-            sc:name "Dotplot" ;
-            sc:sameAs "http://edamontology.org/data_0862" ],
+            sc:additionalType "http://edamontology.org/data_0862" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Dotplot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Pathway or network" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -402036,7 +423994,7 @@ The ReactomeGSA project supports multi-omics, comparative pathway analyses using
     biotools:primaryContact <http://orcid.org/0000-0002-6485-8781> .
 
 <https://bio.tools/reactomics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3047,
         edam:topic_3172,
@@ -402051,7 +424009,7 @@ The ReactomeGSA project supports multi-omics, comparative pathway analyses using
     sc:url "https://yufree.github.io/pmd/" .
 
 <https://bio.tools/read-spider-files> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0611,
         edam:topic_3344,
@@ -402068,7 +424026,7 @@ The ReactomeGSA project supports multi-omics, comparative pathway analyses using
     biotools:primaryContact "Bill Baxter" .
 
 <https://bio.tools/read-tv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
@@ -402086,7 +424044,7 @@ The ReactomeGSA project supports multi-omics, comparative pathway analyses using
     biotools:primaryContact "John Del Gaizo" .
 
 <https://bio.tools/read-write-pdb-files> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_3070,
@@ -402105,7 +424063,7 @@ The ReactomeGSA project supports multi-omics, comparative pathway analyses using
     biotools:primaryContact "Evan" .
 
 <https://bio.tools/read_haps> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0625,
         edam:topic_2885,
@@ -402119,7 +424077,7 @@ The ReactomeGSA project supports multi-omics, comparative pathway analyses using
     sc:url "http://github.com/DecodeGenetics/read_haps" .
 
 <https://bio.tools/readaligner> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0622,
@@ -402135,7 +424093,7 @@ The ReactomeGSA project supports multi-omics, comparative pathway analyses using
     biotools:primaryContact "Veli Makinen" .
 
 <https://bio.tools/readat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0121 ;
@@ -402156,8 +424114,30 @@ The ReactomeGSA project supports multi-omics, comparative pathway analyses using
     sc:url "http://bioconductor.org/packages/release/bioc/html/readat.html" ;
     biotools:primaryContact "Richard Cotton" .
 
+<https://bio.tools/readbouncer> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_3168,
+        edam:topic_3277 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC223>,
+        "pmcid:PMC9235500",
+        "pubmed:35758774" ;
+    sc:description "Precise and scalable adaptive sampling for nanopore sequencing." ;
+    sc:featureList edam:operation_3185,
+        edam:operation_3192,
+        edam:operation_3198,
+        edam:operation_3695 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "ReadBouncer" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://gitlab.com/dacs-hpi/readbouncer" .
+
 <https://bio.tools/readdepth> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3168,
         edam:topic_3572 ;
@@ -402173,22 +424153,20 @@ The ReactomeGSA project supports multi-omics, comparative pathway analyses using
 
 <https://bio.tools/reademption> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2093" ;
-            sc:name "Data reference" ;
-            sc:sameAs "http://edamontology.org/data_2093" ],
+            sc:additionalType "http://edamontology.org/data_3496" ;
+            sc:encodingFormat "http://edamontology.org/format_2545" ;
+            sc:name "RNA sequence (raw)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3496" ;
-            sc:name "RNA sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_3496" ] ;
+            sc:additionalType "http://edamontology.org/data_2093" ;
+            sc:encodingFormat "http://edamontology.org/format_2200" ;
+            sc:name "Data reference" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0928" ;
-            sc:name "Gene expression profile" ;
-            sc:sameAs "http://edamontology.org/data_0928" ],
+            sc:additionalType "http://edamontology.org/data_3112" ;
+            sc:name "Gene expression matrix" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3112" ;
-            sc:name "Gene expression matrix" ;
-            sc:sameAs "http://edamontology.org/data_3112" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0928" ;
+            sc:name "Gene expression profile" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0203,
@@ -402207,14 +424185,14 @@ The ReactomeGSA project supports multi-omics, comparative pathway analyses using
 
 <https://bio.tools/readfastafile> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:citation <https://doi.org/10.1093/nar/gkw343>,
@@ -402230,7 +424208,7 @@ The ReactomeGSA project supports multi-omics, comparative pathway analyses using
     biotools:primaryContact "Galaxy Support Team" .
 
 <https://bio.tools/readfish> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_2885,
         edam:topic_3168,
@@ -402247,7 +424225,7 @@ The ReactomeGSA project supports multi-omics, comparative pathway analyses using
     sc:url "https://www.github.com/looselab/readfish" .
 
 <https://bio.tools/reading-visualizing-covid19-data> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3305,
@@ -402264,7 +424242,7 @@ The ReactomeGSA project supports multi-omics, comparative pathway analyses using
     biotools:primaryContact "Lajos Varga" .
 
 <https://bio.tools/readisq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -402282,7 +424260,7 @@ The ReactomeGSA project supports multi-omics, comparative pathway analyses using
     biotools:primaryContact "Johan Karlsson" .
 
 <https://bio.tools/readout> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0602,
@@ -402297,7 +424275,7 @@ The ReactomeGSA project supports multi-omics, comparative pathway analyses using
     sc:url "http://gibk26.bio.kyutech.ac.jp/jouhou/readout/" .
 
 <https://bio.tools/readqpcr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3519 ;
@@ -402317,7 +424295,7 @@ The ReactomeGSA project supports multi-omics, comparative pathway analyses using
     biotools:primaryContact "James Perkins" .
 
 <https://bio.tools/reads2type> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0637,
         edam:topic_3293,
@@ -402334,7 +424312,7 @@ The ReactomeGSA project supports multi-omics, comparative pathway analyses using
     sc:url "http://www.cbs.dtu.dk/~dhany/reads2type.html" .
 
 <https://bio.tools/readscan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_0654,
@@ -402350,14 +424328,12 @@ The ReactomeGSA project supports multi-omics, comparative pathway analyses using
 
 <https://bio.tools/readseq> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:name "Sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:author "Don Gilbert",
@@ -402378,7 +424354,7 @@ The ReactomeGSA project supports multi-omics, comparative pathway analyses using
     biotools:primaryContact "Web Production" .
 
 <https://bio.tools/readstp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3314,
@@ -402397,14 +424373,14 @@ The ReactomeGSA project supports multi-omics, comparative pathway analyses using
 
 <https://bio.tools/readtools> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3497" ;
-            sc:name "DNA sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_3497" ] ;
+            sc:additionalType "http://edamontology.org/data_3497" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
+            sc:name "DNA sequence (raw)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3497" ;
-            sc:name "DNA sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_3497" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3497" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
+            sc:name "DNA sequence (raw)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0622 ;
@@ -402421,14 +424397,14 @@ The ReactomeGSA project supports multi-omics, comparative pathway analyses using
 
 <https://bio.tools/readw> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3712" ;
+            sc:name "Mass spectrometry spectra" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3654" ;
+            sc:name "Mass spectrometry spectra" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -402442,14 +424418,14 @@ The ReactomeGSA project supports multi-omics, comparative pathway analyses using
 
 <https://bio.tools/readxplorer> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2887" ;
-            sc:name "Nucleic acid sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2887" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2887" ;
+            sc:encodingFormat "http://edamontology.org/format_1936" ;
+            sc:name "Nucleic acid sequence record" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0122,
         edam:topic_0797,
@@ -402471,7 +424447,7 @@ The ReactomeGSA project supports multi-omics, comparative pathway analyses using
     sc:url "http://readxplorer.org" .
 
 <https://bio.tools/reago> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0196,
@@ -402487,7 +424463,7 @@ The ReactomeGSA project supports multi-omics, comparative pathway analyses using
     sc:url "https://github.com/chengyuan/reago-1.1" .
 
 <https://bio.tools/real> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0622,
@@ -402504,24 +424480,51 @@ The ReactomeGSA project supports multi-omics, comparative pathway analyses using
     sc:url "https://nms.kcl.ac.uk/informatics/projects/real/?id=man" ;
     biotools:primaryContact "Dr. Solon P. Pissis" .
 
+<https://bio.tools/realgar> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1026" ;
+            sc:name "Gene symbol" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2805" ;
+            sc:name "GeneSNP ID" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_3170,
+        edam:topic_3173,
+        edam:topic_3308,
+        edam:topic_3517,
+        edam:topic_3518 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC524>,
+        "pubmed:35863045" ;
+    sc:description "REALGAR is a an app that integrates disease-specific, tissue-specific omics results into a tool for designing functional validation studies. REALGAR uses asthma as a disease model to demonstrate how integrating omics results with GWAS data leads to improved understanding of gene associations." ;
+    sc:featureList edam:operation_2428,
+        edam:operation_3197,
+        edam:operation_3799 ;
+    sc:isAccessibleForFree true ;
+    sc:license "BSD-3-Clause" ;
+    sc:name "REALGAR" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://realgar.org/" .
+
 <https://bio.tools/realphy> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2084" ;
-            sc:name "Nucleic acid report" ;
-            sc:sameAs "http://edamontology.org/data_2084" ],
+            sc:additionalType "http://edamontology.org/data_1234" ;
+            sc:encodingFormat "http://edamontology.org/format_1332" ;
+            sc:name "Sequence set (nucleic acid)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1234" ;
-            sc:name "Sequence set (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1234" ],
+            sc:additionalType "http://edamontology.org/data_2084" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Nucleic acid report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2787" ;
-            sc:name "NCBI genome accession" ;
-            sc:sameAs "http://edamontology.org/data_2787" ] ;
+            sc:additionalType "http://edamontology.org/data_2787" ;
+            sc:name "NCBI genome accession" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0872" ;
-            sc:name "Phylogenetic tree" ;
-            sc:sameAs "http://edamontology.org/data_0872" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0872" ;
+            sc:name "Phylogenetic tree" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_3299 ;
@@ -402536,8 +424539,32 @@ The ReactomeGSA project supports multi-omics, comparative pathway analyses using
     sc:softwareHelp <https://realphy.unibas.ch/docs/Realphy_manual.pdf> ;
     sc:url "https://realphy.unibas.ch/fcgi/realphy" .
 
+<https://bio.tools/realvs> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2301" ;
+            sc:name "SMILES string" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_2275,
+        edam:topic_3336,
+        edam:topic_3474,
+        edam:topic_3520 ;
+    sc:citation <https://doi.org/10.1021/ACS.JCIM.1C01021>,
+        "pubmed:34619030" ;
+    sc:description "Toward Enhancing the Precision of Top Hits in Ligand-Based Virtual Screening of Drug Leads from Large Compound Databases." ;
+    sc:featureList edam:operation_3659,
+        edam:operation_3938 ;
+    sc:isAccessibleForFree true ;
+    sc:name "RealVS" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://noveldelta.com/RealVS" .
+
 <https://bio.tools/reaper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:citation <https://doi.org/10.1093/nar/gkv1352> ;
@@ -402556,7 +424583,7 @@ The ReactomeGSA project supports multi-omics, comparative pathway analyses using
     biotools:primaryContact "Mary Todd Bergman" .
 
 <https://bio.tools/rearrvisr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
         edam:topic_3299,
@@ -402569,7 +424596,7 @@ The ReactomeGSA project supports multi-omics, comparative pathway analyses using
     sc:url "https://github.com/dorolin/rearrvisr" .
 
 <https://bio.tools/reaver> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3382,
         edam:topic_3520 ;
@@ -402588,7 +424615,7 @@ Rapid Editable Analysis of Vessel Elements Routine.""" ;
     sc:url "https://github.com/uva-peirce-cottler-lab/public_REAVER" .
 
 <https://bio.tools/reb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203 ;
@@ -402606,7 +424633,7 @@ Rapid Editable Analysis of Vessel Elements Routine.""" ;
     biotools:primaryContact "Karl J. Dykema" .
 
 <https://bio.tools/rebacca> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2259,
         edam:topic_3174,
@@ -402622,7 +424649,7 @@ Rapid Editable Analysis of Vessel Elements Routine.""" ;
     sc:url "http://faculty.wcas.northwestern.edu/~hji403/REBACCA.htm" .
 
 <https://bio.tools/rebaler> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "Rebaler is a program for conducting reference-based assemblies using long reads. It relies mainly on minimap2 for alignment and Racon for making consensus sequences." ;
     sc:featureList edam:operation_0524 ;
     sc:name "rebaler" ;
@@ -402630,7 +424657,7 @@ Rapid Editable Analysis of Vessel Elements Routine.""" ;
     sc:url "https://github.com/rrwick/Rebaler" .
 
 <https://bio.tools/rebase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_0821,
@@ -402652,7 +424679,7 @@ Rapid Editable Analysis of Vessel Elements Routine.""" ;
     biotools:primaryContact "Contact form" .
 
 <https://bio.tools/rebaseextract> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3125 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -402683,14 +424710,14 @@ Rapid Editable Analysis of Vessel Elements Routine.""" ;
 
 <https://bio.tools/recal2> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3654" ;
+            sc:name "Mass spectrometry spectra" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3654" ;
+            sc:name "Mass spectrometry spectra" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -402705,7 +424732,7 @@ Rapid Editable Analysis of Vessel Elements Routine.""" ;
     sc:url "http://www.ms-utils.org/recal2.html" .
 
 <https://bio.tools/recapnet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_2815 ;
     sc:citation <https://doi.org/10.1109/TCYB.2020.2965196>,
@@ -402714,8 +424741,33 @@ Rapid Editable Analysis of Vessel Elements Routine.""" ;
     sc:name "RecapNet" ;
     sc:url "https://github.com/tianwangbuaa/RecapNet" .
 
+<https://bio.tools/recappable-seq> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0659,
+        edam:topic_3170,
+        edam:topic_3295,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.1101/GR.275784.121>,
+        "pmcid:PMC8744680",
+        "pubmed:34815308" ;
+    sc:description "Comprehensive determination of transcription start sites derived from all RNA polymerases using ReCappable-seq." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_0440,
+        edam:operation_3192,
+        edam:operation_3216 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "ReCappable-seq" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://genome.ucsc.edu/s/rezo/ReCappable-seq" .
+
 <https://bio.tools/recbic> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3170,
         edam:topic_3518 ;
@@ -402728,7 +424780,7 @@ Rapid Editable Analysis of Vessel Elements Routine.""" ;
     sc:url "https://github.com/holyzews/RecBic/tree/master/RecBic/" .
 
 <https://bio.tools/receem> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0218,
         edam:topic_0769,
@@ -402747,7 +424799,7 @@ Coordination ellipsis is a linguistic phenomenon particularly abundant in scienc
     sc:url "https://github.com/chiyuan1126/RECEEM" .
 
 <https://bio.tools/receptloss> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0659,
         edam:topic_2640,
@@ -402771,7 +424823,7 @@ receptLoss identifies genes whose expression is lost in subsets of tumors relati
     sc:url "https://github.com/dpique/receptLoss" .
 
 <https://bio.tools/recgbm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Script" ;
     sc:applicationSubCategory edam:topic_0659,
@@ -402789,7 +424841,7 @@ receptLoss identifies genes whose expression is lost in subsets of tumors relati
     sc:url "https://github.com/ryuu90/ReCGBM" .
 
 <https://bio.tools/recipedb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0632,
         edam:topic_2269,
@@ -402805,7 +424857,7 @@ receptLoss identifies genes whose expression is lost in subsets of tumors relati
     sc:url "https://cosylab.iiitd.edu.in/recipedb" .
 
 <https://bio.tools/reciprocalspaceship> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2828,
@@ -402824,7 +424876,7 @@ reciprocalspaceship provides a pandas-style interface for analyzing and manipula
     sc:url "https://github.com/Hekstra-Lab/reciprocalspaceship" .
 
 <https://bio.tools/reciter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3384,
@@ -402839,7 +424891,7 @@ reciprocalspaceship provides a pandas-style interface for analyzing and manipula
     sc:url "https://github.com/wcmc-its/reciter/" .
 
 <https://bio.tools/recmin> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3053,
         edam:topic_3293,
@@ -402853,7 +424905,7 @@ reciprocalspaceship provides a pandas-style interface for analyzing and manipula
     sc:url "http://www.stats.ox.ac.uk/~myers/RecMin.html" .
 
 <https://bio.tools/recode> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0203,
@@ -402875,14 +424927,12 @@ reciprocalspaceship provides a pandas-style interface for analyzing and manipula
 
 <https://bio.tools/recoder> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1276" ;
-            sc:name "Nucleic acid features" ;
-            sc:sameAs "http://edamontology.org/data_1276" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1276" ;
+            sc:name "Nucleic acid features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3511 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -402912,7 +424962,7 @@ reciprocalspaceship provides a pandas-style interface for analyzing and manipula
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/recoder.html" .
 
 <https://bio.tools/recognicer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0621,
@@ -402935,17 +424985,18 @@ reciprocalspaceship provides a pandas-style interface for analyzing and manipula
 
 <https://bio.tools/recognizer> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2886" ;
-            sc:name "Protein sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2886" ] ;
+            sc:additionalType "http://edamontology.org/data_2886" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0907" ;
-            sc:name "Protein family report" ;
-            sc:sameAs "http://edamontology.org/data_0907" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0907" ;
+            sc:encodingFormat "http://edamontology.org/format_3977" ;
+            sc:name "Protein family report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0085 ;
     sc:author <http://orcid.org/0000-0002-2691-9950> ;
+    sc:citation <https://doi.org/10.1016/j.csbj.2022.03.042> ;
     sc:description "A tool for domain based annotation with databases from the Conserved Domains Database." ;
     sc:featureList edam:operation_3672 ;
     sc:isAccessibleForFree true ;
@@ -402954,11 +425005,11 @@ reciprocalspaceship provides a pandas-style interface for analyzing and manipula
     sc:operatingSystem "Linux",
         "Mac" ;
     sc:softwareHelp <https://github.com/iquasere/reCOGnizer#readme> ;
-    sc:softwareVersion "1.4.4" ;
+    sc:softwareVersion "1.7.4" ;
     sc:url "https://github.com/iquasere/reCOGnizer" .
 
 <https://bio.tools/recognizing-far-near-relations-clusters-gdem> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3474 ;
@@ -402974,7 +425025,7 @@ reciprocalspaceship provides a pandas-style interface for analyzing and manipula
     biotools:primaryContact "Kaijun Wang" .
 
 <https://bio.tools/recoittv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3452 ;
     sc:citation <https://doi.org/10.1186/s12859-018-2169-3> ;
@@ -402989,8 +425040,27 @@ reciprocalspaceship provides a pandas-style interface for analyzing and manipula
     sc:url "https://github.com/arcosuc3m/recoittv" ;
     biotools:primaryContact "Manuel Desco" .
 
+<https://bio.tools/recombat> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_2269,
+        edam:topic_3518 ;
+    sc:citation <https://doi.org/10.1101/2021.11.22.469488> ;
+    sc:description "Batch effect removal in large-scale, multi-source omics data integration." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_3435,
+        edam:operation_3658 ;
+    sc:isAccessibleForFree true ;
+    sc:license "BSD-3-Clause" ;
+    sc:name "reComBat" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/BorgwardtLab/reComBat.git" .
+
 <https://bio.tools/recombclust> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_3127 ;
@@ -403009,7 +425079,7 @@ reciprocalspaceship provides a pandas-style interface for analyzing and manipula
     sc:url "https://github.com/isglobal-brge/recombClust" .
 
 <https://bio.tools/recombinase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0203,
@@ -403030,8 +425100,31 @@ reciprocalspaceship provides a pandas-style interface for analyzing and manipula
     sc:softwareHelp <http://www.informatics.jax.org/mgihome/support/Cre2016tutorial.pdf> ;
     sc:url "http://www.informatics.jax.org/home/recombinase" .
 
+<https://bio.tools/recombinex> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_0196,
+        edam:topic_0621,
+        edam:topic_0625,
+        edam:topic_0749 ;
+    sc:citation <https://doi.org/10.1371/journal.pgen.1010047>,
+        "pmcid:PMC9119626",
+        "pubmed:35533184" ;
+    sc:description "A generalized computational framework for automatic high-throughput gamete genotyping and tetrad-based recombination analysis." ;
+    sc:featureList edam:operation_0415,
+        edam:operation_0525,
+        edam:operation_2238,
+        edam:operation_3192,
+        edam:operation_3196 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "RecombineX" ;
+    sc:operatingSystem "Linux" ;
+    sc:url "https://github.com/yjx1217/RecombineX" .
+
 <https://bio.tools/recomia> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3303,
         edam:topic_3384,
         edam:topic_3444,
@@ -403050,7 +425143,7 @@ The Research Consortium for Medical Image Analysis (RECOMIA) is a not for profit
     sc:url "http://www.recomia.org" .
 
 <https://bio.tools/recon> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_0749,
@@ -403070,7 +425163,7 @@ The Research Consortium for Medical Image Analysis (RECOMIA) is a not for profit
     biotools:primaryContact "Support" .
 
 <https://bio.tools/reconciliator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0196 ;
     sc:citation "pubmed:18057021" ;
@@ -403082,7 +425175,7 @@ The Research Consortium for Medical Image Analysis (RECOMIA) is a not for profit
     biotools:primaryContact "Zimin A.V." .
 
 <https://bio.tools/reconcnv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_2885,
         edam:topic_3168,
@@ -403103,7 +425196,7 @@ ReconCNV has been developed to overcome this challenge by providing interactive
     sc:url "https://github.com/rghu/reconCNV" .
 
 <https://bio.tools/reconstruct3d3wayfret> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_3070,
@@ -403122,7 +425215,7 @@ ReconCNV has been developed to overcome this challenge by providing interactive
     biotools:primaryContact "Adam Hoppe" .
 
 <https://bio.tools/reconstruction-image-simple-back-projection> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3315,
@@ -403142,7 +425235,7 @@ ReconCNV has been developed to overcome this challenge by providing interactive
     biotools:primaryContact "Shrinivas" .
 
 <https://bio.tools/reconstruction-spectral-analysis-oct> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -403161,7 +425254,7 @@ ReconCNV has been developed to overcome this challenge by providing interactive
     biotools:primaryContact "Orly Liba" .
 
 <https://bio.tools/record> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3053,
@@ -403175,7 +425268,7 @@ ReconCNV has been developed to overcome this challenge by providing interactive
     sc:url "http://www.wageningenur.nl/en/show/RECORD.htm" .
 
 <https://bio.tools/recount> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:description "Probabilistic tag count error correction for  next generation sequencing data (Solexa/Illumina)." ;
@@ -403189,7 +425282,7 @@ ReconCNV has been developed to overcome this challenge by providing interactive
     biotools:primaryContact "Edward Wijaya" .
 
 <https://bio.tools/recount3> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -403210,7 +425303,7 @@ ReconCNV has been developed to overcome this challenge by providing interactive
         "Kasper D. Hansen" .
 
 <https://bio.tools/recount_bioconductor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3168,
@@ -403232,7 +425325,7 @@ ReconCNV has been developed to overcome this challenge by providing interactive
     biotools:primaryContact "Leonardo Collado-Torres" .
 
 <https://bio.tools/recountdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0203,
@@ -403249,7 +425342,7 @@ ReconCNV has been developed to overcome this challenge by providing interactive
     sc:url "http://recountdb.cbrc.jp/" .
 
 <https://bio.tools/recoup> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0622 ;
@@ -403267,7 +425360,7 @@ ReconCNV has been developed to overcome this challenge by providing interactive
     biotools:primaryContact "Panagiotis Moulos" .
 
 <https://bio.tools/recover> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3305,
@@ -403285,7 +425378,7 @@ ReconCNV has been developed to overcome this challenge by providing interactive
     biotools:primaryContact "Ajitesh Srivastava" .
 
 <https://bio.tools/recovery> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0196,
@@ -403303,7 +425396,7 @@ ReconCNV has been developed to overcome this challenge by providing interactive
         "Paul Medvedev" .
 
 <https://bio.tools/recpars> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3293 ;
     sc:citation <https://doi.org/10.1007/BF00182187> ;
@@ -403318,7 +425411,7 @@ ReconCNV has been developed to overcome this challenge by providing interactive
     biotools:primaryContact "Mikkel Heide Schierup" .
 
 <https://bio.tools/recphyloxml> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_3053,
@@ -403335,7 +425428,7 @@ ReconCNV has been developed to overcome this challenge by providing interactive
     biotools:primaryContact "Wandrille Duchemin" .
 
 <https://bio.tools/rectangles> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196 ;
     sc:citation <https://doi.org/10.1007/978-3-642-33122-0_20> ;
@@ -403349,7 +425442,7 @@ ReconCNV has been developed to overcome this challenge by providing interactive
     sc:url "http://bioinf.spbau.ru/en/rectangles" .
 
 <https://bio.tools/recurrence-quantification-analysis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3063,
         edam:topic_3304 ;
@@ -403366,7 +425459,7 @@ ReconCNV has been developed to overcome this challenge by providing interactive
     biotools:primaryContact "Gaoxiang Ouyang" .
 
 <https://bio.tools/red> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0099,
@@ -403385,7 +425478,7 @@ ReconCNV has been developed to overcome this challenge by providing interactive
         "Xing Li" .
 
 <https://bio.tools/red-ml> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0099,
@@ -403404,7 +425497,7 @@ ReconCNV has been developed to overcome this challenge by providing interactive
         "Xun Xu" .
 
 <https://bio.tools/red_clover> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0625,
         edam:topic_2885,
@@ -403424,7 +425517,7 @@ Red clover (Trifolium pratense L.) is a diploid, naturally cross-pollinated, coo
     sc:url "https://github.com/WLpython19/RedClover" .
 
 <https://bio.tools/red_panda> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0622,
         edam:topic_3170,
@@ -403445,7 +425538,7 @@ Red Panda employs the unique information found in scRNA-seq to increase accuracy
     sc:url "https://github.com/adambioi/red_panda" .
 
 <https://bio.tools/redata> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3125 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -403475,7 +425568,7 @@ Red Panda employs the unique information found in scRNA-seq to increase accuracy
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/redata.html" .
 
 <https://bio.tools/redcap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0219,
         edam:topic_3071,
@@ -403496,7 +425589,7 @@ Red Panda employs the unique information found in scRNA-seq to increase accuracy
     sc:url "https://www.project-redcap.org/" .
 
 <https://bio.tools/redcm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_2269,
@@ -403519,7 +425612,7 @@ Red Panda employs the unique information found in scRNA-seq to increase accuracy
     sc:url "https://github.com/aranyics/ReDCM" .
 
 <https://bio.tools/redcraft> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0154,
         edam:topic_0176,
@@ -403538,7 +425631,7 @@ Nuclear Magnetic Resonance (NMR) spectroscopy is one of the two primary experime
     sc:url "https://bitbucket.org/hvalafar/redcraft/src/master/" .
 
 <https://bio.tools/redemption> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_2259,
@@ -403556,14 +425649,14 @@ Nuclear Magnetic Resonance (NMR) spectroscopy is one of the two primary experime
 
 <https://bio.tools/reder> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ] ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:encodingFormat "http://edamontology.org/format_3166" ;
+            sc:name "Pathway or network" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Pathway or network" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0092 ;
@@ -403584,7 +425677,7 @@ Nuclear Magnetic Resonance (NMR) spectroscopy is one of the two primary experime
     biotools:primaryContact <http://orcid.org/0000-0003-4942-8131> .
 
 <https://bio.tools/redfly> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0203,
@@ -403607,14 +425700,14 @@ Nuclear Magnetic Resonance (NMR) spectroscopy is one of the two primary experime
 
 <https://bio.tools/redhom> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation "pubmed:9514112" ;
@@ -403631,7 +425724,7 @@ Nuclear Magnetic Resonance (NMR) spectroscopy is one of the two primary experime
     sc:url "http://cbs.dtu.dk/services/RedHom/" .
 
 <https://bio.tools/redhorse> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0622,
@@ -403651,7 +425744,7 @@ Nuclear Magnetic Resonance (NMR) spectroscopy is one of the two primary experime
     biotools:primaryContact "Support" .
 
 <https://bio.tools/redi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_2259,
         edam:topic_3292,
@@ -403666,7 +425759,7 @@ Nuclear Magnetic Resonance (NMR) spectroscopy is one of the two primary experime
     sc:url "http://www.cosbi.eu/research/prototypes/redi" .
 
 <https://bio.tools/redial-2020> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0605,
         edam:topic_3336,
@@ -403690,7 +425783,7 @@ A portal for estimating Anti-SARS-CoV-2 activities.""" ;
     sc:url "http://drugcentral.org/Redial</a" .
 
 <https://bio.tools/redidb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_3047,
         edam:topic_3308 ;
@@ -403707,8 +425800,29 @@ A portal for estimating Anti-SARS-CoV-2 activities.""" ;
     sc:url "http://srv00.recas.ba.infn.it/py_script/REDIdb/" ;
     biotools:primaryContact "Ernesto Picardi" .
 
+<https://bio.tools/redigest> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_0659,
+        edam:topic_0749,
+        edam:topic_2885,
+        edam:topic_3697 ;
+    sc:citation <https://doi.org/10.1101/2021.11.09.467873> ;
+    sc:description "A Python GUI for In-Silico Restriction Digestion Analysis of Genes or Complete Genome Sequences." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_0365,
+        edam:operation_3200 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "REDigest" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/abhijeetsingh1704/REDigest" .
+
 <https://bio.tools/rediportal> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_3168,
@@ -403733,16 +425847,35 @@ A portal for estimating Anti-SARS-CoV-2 activities.""" ;
     sc:softwareHelp <http://srv00.recas.ba.infn.it/atlas/help.html> ;
     sc:url "http://srv00.recas.ba.infn.it/atlas/" .
 
+<https://bio.tools/rediscover> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0199,
+        edam:topic_2269 ;
+    sc:author <https://orcid.org/0000-0002-1588-2195>,
+        "Laura Jareno" ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAB709>,
+        "pubmed:34664620" ;
+    sc:description "Rediscover is an R package to identify mutually exclusive mutations. Rediscover is an algorithm developed to identify mutually exclusive genomic events. Its main contribution is a statistical analysis based on the Poisson-Binomial (PB) distribution to take into account the mutation rate of genes and samples. Discover is very effective for identifying mutually exclusive mutations at the expense of speed in large datasets: the Poisson-Binomial is computationally costly to estimate, and checking all the potential mutually exclusive alterations requires millions of tests." ;
+    sc:featureList edam:operation_3435,
+        edam:operation_3659 ;
+    sc:license "Artistic-2.0" ;
+    sc:name "Rediscover" ;
+    sc:softwareHelp <https://cran.r-project.org/web/packages/Rediscover/Rediscover.pdf>,
+        <https://cran.r-project.org/web/packages/Rediscover/vignettes/Rediscover.html> ;
+    sc:url "https://cran.r-project.org/package=Rediscover" ;
+    biotools:primaryContact <https://orcid.org/0000-0002-3274-2450> .
+
 <https://bio.tools/reditools> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1916" ;
-            sc:name "Alignment" ;
-            sc:sameAs "http://edamontology.org/data_1916" ] ;
+            sc:additionalType "http://edamontology.org/data_1916" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Alignment" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2526" ;
-            sc:name "Text data" ;
-            sc:sameAs "http://edamontology.org/data_2526" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2526" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Text data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622 ;
     sc:citation <https://doi.org/10.1038/s41596-019-0279-7>,
@@ -403767,7 +425900,7 @@ A portal for estimating Anti-SARS-CoV-2 activities.""" ;
     biotools:primaryContact <https://orcid.org/0000-0002-6549-0114> .
 
 <https://bio.tools/redoak> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0654,
         edam:topic_3168 ;
@@ -403779,8 +425912,23 @@ A portal for estimating Anti-SARS-CoV-2 activities.""" ;
     sc:name "RedOak" ;
     sc:url "https://gitlab.info-ufr.univ-montp2.fr/DoccY/RedOak" .
 
+<https://bio.tools/redotable> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Desktop application" ;
+    sc:applicationSubCategory edam:topic_0092,
+        edam:topic_0622 ;
+    sc:description "re-DOT-able is a desktop application which allows the comparison of two sets of DNA/RNA sequences through the creation of an interactive dot plot." ;
+    sc:featureList edam:operation_0491 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "redotable" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://www.bioinformatics.babraham.ac.uk/projects/redotable/" .
+
 <https://bio.tools/redoxmech> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0176,
         edam:topic_2259,
@@ -403797,7 +425945,7 @@ A portal for estimating Anti-SARS-CoV-2 activities.""" ;
     sc:url "http://www.igb.uci.edu/tools/sb/metabolic-modeling/81-redoxmech.html" .
 
 <https://bio.tools/redpath> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_2640,
         edam:topic_3170,
@@ -403816,7 +425964,7 @@ redPATH reconstructs the pseudo development time of cell lineages in single-cell
     sc:url "https://github.com/tinglabs/redPATH" .
 
 <https://bio.tools/reds> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0176 ;
     sc:citation "pubmed:21609950" ;
@@ -403834,7 +425982,7 @@ redPATH reconstructs the pseudo development time of cell lineages in single-cell
     biotools:primaryContact "Assistance" .
 
 <https://bio.tools/redseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -403853,7 +426001,7 @@ redPATH reconstructs the pseudo development time of cell lineages in single-cell
     biotools:primaryContact "Lihua Julie Zhu" .
 
 <https://bio.tools/reduce> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0621,
@@ -403870,13 +426018,25 @@ redPATH reconstructs the pseudo development time of cell lineages in single-cell
     sc:name "REDUCE" ;
     sc:url "http://bussemaker.bio.columbia.edu/reduce/" .
 
-<https://bio.tools/reduced_representation_bisulfite_sequencing> a sc:SoftwareApplication ;
-    sc:description "CD Genomics is offering reduced representation bisulfite sequencing (RRBS) service at single-nucleotide resolution by reducing the amount of sequencing required while capturing the majority of promoters and other relevant genomic regions. RRBS is favorable for biomarker discovery by the identification and analysis of differentially methylated regions (DMRs) between samples." ;
-    sc:name "Reduced Representation Bisulfite Sequencing" ;
-    sc:url "https://www.cd-genomics.com/Reduced-Representation-Bisulfite-Sequencing.html" .
+<https://bio.tools/reet> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0634,
+        edam:topic_0769,
+        edam:topic_3382 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC315>,
+        "pubmed:35532083" ;
+    sc:description "Robustness Evaluation and Enhancement Toolbox for Computational Pathology." ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "REET" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/alexjfoote/reetoolbox" .
 
 <https://bio.tools/refTSS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0749 ;
@@ -403896,7 +426056,7 @@ redPATH reconstructs the pseudo development time of cell lineages in single-cell
     biotools:primaryContact "TakeyaKasukawa" .
 
 <https://bio.tools/refbool> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3170,
@@ -403913,7 +426073,7 @@ redPATH reconstructs the pseudo development time of cell lineages in single-cell
     biotools:primaryContact "Antonio Delsol" .
 
 <https://bio.tools/refcov> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:description "WashU Reference Coverage tool for analyzing the depth, breadth, and topology of sequencing coverage." ;
@@ -403924,7 +426084,7 @@ redPATH reconstructs the pseudo development time of cell lineages in single-cell
     biotools:primaryContact "RefCov Support" .
 
 <https://bio.tools/reference-gene-selection> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3519 ;
     sc:citation <https://doi.org/10.1186/gb-2002-3-7-research0034> ;
@@ -403941,7 +426101,7 @@ redPATH reconstructs the pseudo development time of cell lineages in single-cell
     biotools:primaryContact "Elisa Mori" .
 
 <https://bio.tools/refinealignments> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0091,
@@ -403960,7 +426120,7 @@ redPATH reconstructs the pseudo development time of cell lineages in single-cell
     biotools:primaryContact "Will Dampier" .
 
 <https://bio.tools/refinehmm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3168,
@@ -403976,7 +426136,7 @@ redPATH reconstructs the pseudo development time of cell lineages in single-cell
     sc:url "http://sourceforge.net/projects/refinehmm/" .
 
 <https://bio.tools/refinem> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:description "RefineM is a set of tools for improving population genomes. It provides methods designed to improve the completeness of a genome along with methods for identifying and removing contamination." ;
     sc:license "GPL-3.0" ;
@@ -403984,7 +426144,7 @@ redPATH reconstructs the pseudo development time of cell lineages in single-cell
     sc:url "https://github.com/dparks1134/RefineM" .
 
 <https://bio.tools/refka> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
         edam:topic_3315,
@@ -404002,12 +426162,16 @@ Recent advances in long-read sequencing have the potential to produce more compl
     sc:url "https://github.com/AppliedBioinformatics/RefKA" .
 
 <https://bio.tools/refmac> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_1317,
         edam:topic_2269 ;
-    sc:citation <https://doi.org/10.1107/S0907444911001314> ;
+    sc:citation <https://doi.org/10.1107/S0907444911001314>,
+        <https://doi.org/10.1107/S0907444996012255>,
+        "pmcid:PMC3069751",
+        "pubmed:15299926",
+        "pubmed:21460454" ;
     sc:description "Maximum likelihood refinement of a macromolecular structure against X-ray diffraction data." ;
     sc:featureList edam:operation_0322,
         edam:operation_2238,
@@ -404023,7 +426187,7 @@ Recent advances in long-read sequencing have the potential to produce more compl
     sc:url "http://www2.mrc-lmb.cam.ac.uk/groups/murshudov/content/refmac/refmac.html" .
 
 <https://bio.tools/refnet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0602,
@@ -404044,22 +426208,21 @@ Recent advances in long-read sequencing have the potential to produce more compl
 
 <https://bio.tools/refold> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0950" ;
-            sc:name "Mathematical model" ;
-            sc:sameAs "http://edamontology.org/data_0950" ],
+            sc:additionalType "http://edamontology.org/data_0950" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Mathematical model" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2974" ;
-            sc:name "Protein sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_2974" ] ;
+            sc:additionalType "http://edamontology.org/data_2974" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Protein sequence (raw)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ],
+            sc:additionalType "http://edamontology.org/data_0950" ;
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         [ a bsct:FormalParameter ;
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-            sc:sameAs "http://edamontology.org/data_0950" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602 ;
     sc:citation <https://doi.org/10.1093/NAR/GKX249>,
@@ -404076,14 +426239,14 @@ Recent advances in long-read sequencing have the potential to produce more compl
 
 <https://bio.tools/reformat_fastq> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
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-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3168 ;
@@ -404102,26 +426265,26 @@ Recent advances in long-read sequencing have the potential to produce more compl
 
 <https://bio.tools/reformat_snpeff_for_syntview> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2885,
         edam:topic_3071 ;
@@ -404139,7 +426302,7 @@ Recent advances in long-read sequencing have the potential to produce more compl
     biotools:primaryContact "Galaxy Support Team" .
 
 <https://bio.tools/refplus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3518 ;
@@ -404157,7 +426320,7 @@ Recent advances in long-read sequencing have the potential to produce more compl
     biotools:primaryContact "Kai-Ming Chang" .
 
 <https://bio.tools/reframe> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3336,
@@ -404176,8 +426339,17 @@ ReframeDB is an open and extendable drug repurposing database and screening set
     sc:name "ReFRAME" ;
     sc:url "https://reframedb.org" .
 
+<https://bio.tools/reframed> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:description "ReFramed implements many constraint-based simulation methods (see list below), and contains interfaces to other libraries of the COBRA ecosystem including escher, cobrapy, and optlang." ;
+    sc:isAccessibleForFree true ;
+    sc:license "Apache-2.0" ;
+    sc:name "reFramed" ;
+    sc:softwareHelp <https://github.com/cdanielmachado/reframed> ;
+    sc:url "https://github.com/cdanielmachado/reframed" .
+
 <https://bio.tools/refrgim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2885,
@@ -404201,19 +426373,27 @@ ReframeDB is an open and extendable drug repurposing database and screening set
 
 <https://bio.tools/refseq> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0989" ;
-            sc:name "Protein identifier" ;
-            sc:sameAs "http://edamontology.org/data_0989" ] ;
+            sc:additionalType "http://edamontology.org/data_0989" ;
+            sc:name "Protein identifier" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Sequence record" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0797 ;
     sc:citation <https://doi.org/10.1093/nar/gkl842>,
-        <https://doi.org/10.1093/nar/gkr1079> ;
+        <https://doi.org/10.1093/nar/gkr1079>,
+        <https://doi.org/10.1093/nar/gku1207>,
+        <https://doi.org/10.1093/nar/gkv1189>,
+        <https://doi.org/10.1093/nar/gkw569>,
+        "pmcid:PMC4383986",
+        "pmcid:PMC4702849",
+        "pmcid:PMC5001611",
+        "pubmed:25428358",
+        "pubmed:26553804",
+        "pubmed:27342282" ;
     sc:description "A comprehensive, integrated, non-redundant, well-annotated set of sequences, including genomic DNA, transcripts, and proteins. Provides a stable reference for genome annotation, gene identification and characterization, mutation and polymorphism analysis (especially RefSeqGene records), expression studies, and comparative analyses." ;
     sc:featureList edam:operation_0224 ;
     sc:name "NCBI reference sequences" ;
@@ -404225,14 +426405,14 @@ ReframeDB is an open and extendable drug repurposing database and screening set
 
 <https://bio.tools/refseqget> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:encodingFormat "http://edamontology.org/format_1919" ;
+            sc:name "Sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:encodingFormat "http://edamontology.org/format_1919" ;
+            sc:name "Sequence record" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0622,
@@ -404266,7 +426446,7 @@ ReframeDB is an open and extendable drug repurposing database and screening set
     sc:url "http://www.bioinformatics.nl/cgi-bin/emboss/refseqget" .
 
 <https://bio.tools/refshannon> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3170,
         edam:topic_3308,
@@ -404287,7 +426467,7 @@ High throughput sequencing of RNA (RNA-Seq) has become a staple in modern molecu
     sc:url "https://github.com/shunfumao/RefShannon" .
 
 <https://bio.tools/regBase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0659,
         edam:topic_2640 ;
@@ -404301,7 +426481,7 @@ High throughput sequencing of RNA (RNA-Seq) has become a staple in modern molecu
     sc:url "https://github.com/mulinlab/regBase" .
 
 <https://bio.tools/regals> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_2828,
         edam:topic_3520 ;
@@ -404321,7 +426501,7 @@ The Python implementation was developed in Python 3. The REGALS library requires
     sc:url "https://github.com/ando-lab/regals" .
 
 <https://bio.tools/reganalyst> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0749,
@@ -404334,7 +426514,7 @@ The Python implementation was developed in Python 3. The REGALS library requires
     sc:url "http://www.nii.ac.in/~deepak/RegAnalyst/" .
 
 <https://bio.tools/regate> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0219,
         edam:topic_3071 ;
@@ -404350,7 +426530,7 @@ The Python implementation was developed in Python 3. The REGALS library requires
     biotools:primaryContact "Olivia Doppelt-Azeroual" .
 
 <https://bio.tools/regbenchmark> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3277,
         edam:topic_3382,
@@ -404368,8 +426548,109 @@ The Python implementation was developed in Python 3. The REGALS library requires
     sc:url "https://github.com/BioimageInformaticsTampere/RegBenchmark" ;
     biotools:primaryContact "Pekka Ruusuvuori" .
 
+<https://bio.tools/regcnn> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0749,
+        edam:topic_3169,
+        edam:topic_3179,
+        edam:topic_3295,
+        edam:topic_3500 ;
+    sc:citation <https://doi.org/10.1016/J.CSBJ.2021.12.015>,
+        "pmcid:PMC8724954",
+        "pubmed:35035784" ;
+    sc:description "Identifying Drosophila genome-wide cis-regulatory modules via integrating the local patterns between epigenetic marks and TF binding motifs" ;
+    sc:featureList edam:operation_0239,
+        edam:operation_0445,
+        edam:operation_3436 ;
+    sc:isAccessibleForFree true ;
+    sc:name "regCNN" ;
+    sc:operatingSystem "Linux" ;
+    sc:url "http://cobisHSS0.im.nuk.edu.tw/regCNN/" .
+
+<https://bio.tools/regeneration_roadmap> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1025" ;
+            sc:name "Gene identifier" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0208,
+        edam:topic_0749,
+        edam:topic_3170,
+        edam:topic_3173,
+        edam:topic_3308 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAB870>,
+        "pmcid:PMC8728239",
+        "pubmed:34591960" ;
+    sc:description "Regeneration Roadmap aims to compile large datasets for gene expression and regulation created by a broad spectrum of high-throughput omics technologies. This one-stop service provides user-friendly functionalities to explore annotated regeneration-related changes in gene expression, as well as raw data downloads from these multi-omics studies. The current implementation includes five modules: Regeneration-related genes, Transcriptomics, Single-cell Transcriptomics, Epigenomics and Pharmacogenomics." ;
+    sc:featureList edam:operation_2421,
+        edam:operation_2422,
+        edam:operation_3431 ;
+    sc:isAccessibleForFree true ;
+    sc:name "Regeneration Roadmap" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://ngdc.cncb.ac.cn/regeneration/index" .
+
+<https://bio.tools/regenomics> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1893" ;
+            sc:name "Locus ID" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2299" ;
+            sc:name "Gene name" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0602,
+        edam:topic_0780,
+        edam:topic_3170,
+        edam:topic_3173,
+        edam:topic_3308 ;
+    sc:citation <https://doi.org/10.1016/J.CSBJ.2022.06.033>,
+        "pmcid:PMC9249971",
+        "pubmed:35832616" ;
+    sc:description "A web-based application for plant REGENeration-associated transcriptOMICS analyses." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_1781,
+        edam:operation_3463,
+        edam:operation_3891 ;
+    sc:isAccessibleForFree true ;
+    sc:name "REGENOMICS" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://plantregeneration.snu.ac.kr/regenomics/?species=Ath" .
+
+<https://bio.tools/regenrich> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0204,
+        edam:topic_0602,
+        edam:topic_0659,
+        edam:topic_0749,
+        edam:topic_3295 ;
+    sc:citation <https://doi.org/10.1038/S42003-021-02991-5>,
+        "pmcid:PMC8752721",
+        "pubmed:35017649" ;
+    sc:description "RegEnrich gene regulator enrichment analysis reveals a key role of the ETS transcription factor family in interferon signaling." ;
+    sc:featureList edam:operation_1781,
+        edam:operation_2436,
+        edam:operation_3223,
+        edam:operation_3741,
+        edam:operation_3766 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-2.0" ;
+    sc:name "RegEnrich" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://www.bioconductor.org/packages/release/bioc/manuals/RegEnrich/man/RegEnrich.pdf> ;
+    sc:url "https://www.bioconductor.org/packages/release/bioc/html/RegEnrich.html" .
+
 <https://bio.tools/regent> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3053,
@@ -404385,7 +426666,7 @@ The Python implementation was developed in Python 3. The REGALS library requires
     sc:url "https://www.kcl.ac.uk/lsm/research/divisions/gmm/departments/mmg/researchgroups/clewis/software/regent/index.aspx" .
 
 <https://bio.tools/regentrans> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3293,
@@ -404404,32 +426685,8 @@ The Python implementation was developed in Python 3. The REGALS library requires
         "Windows" ;
     sc:url "https://snitkin-lab-umich.github.io/regentrans/" .
 
-<https://bio.tools/regional_imaging_genetic_associations> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0625,
-        edam:topic_2885,
-        edam:topic_3308,
-        edam:topic_3383,
-        edam:topic_3384 ;
-    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTZ948>,
-        "pubmed:31860065" ;
-    sc:description """Regional Imaging Genetic Enrichment Analysis.
-
-RIGEA is an R software tool for performing regional imaging genetic enrichment analysis.
-
-Please cite the following paper.
-
-Results: In this paper, we propose a flexible and powerful framework for mining regional imaging genetic associations via voxelwise enrichment analysis, which embraces the collective effect of weak voxel-level signals and integrates brain anatomical annotation information.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'Regional Imaging Genetic Enrichment Analysis', 'voxelwise', 'IMPLEMENTATION:The', 'voxellevel'""" ;
-    sc:featureList edam:operation_3443,
-        edam:operation_3501,
-        edam:operation_3553 ;
-    sc:license "GPL-3.0" ;
-    sc:name "regional imaging genetic associations" ;
-    sc:url "https://github.com/lshen/RIGEA" .
-
 <https://bio.tools/regionalhapmapextractor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_2885,
@@ -404443,7 +426700,7 @@ Results: In this paper, we propose a flexible and powerful framework for mining
     sc:url "https://yunliweb.its.unc.edu/software.html" .
 
 <https://bio.tools/regionalp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_2885,
         edam:topic_3053 ;
@@ -404460,7 +426717,7 @@ Results: In this paper, we propose a flexible and powerful framework for mining
         "Wang Xu" .
 
 <https://bio.tools/regionconnect> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0611,
         edam:topic_0634,
         edam:topic_3384,
@@ -404481,7 +426738,7 @@ Postmortem MRI in aging research Find Out More.""" ;
     sc:url "http://www.nitrc.org/projects/iit" .
 
 <https://bio.tools/regioner> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0622,
@@ -404504,14 +426761,14 @@ Postmortem MRI in aging research Find Out More.""" ;
 
 <https://bio.tools/regionreport> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1017" ;
-            sc:name "Sequence range" ;
-            sc:sameAs "http://edamontology.org/data_1017" ] ;
+            sc:additionalType "http://edamontology.org/data_1017" ;
+            sc:encodingFormat "http://edamontology.org/format_2078" ;
+            sc:name "Sequence range" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_3508" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3170 ;
@@ -404531,7 +426788,7 @@ Postmortem MRI in aging research Find Out More.""" ;
     biotools:primaryContact "Leonardo Collado-Torres" .
 
 <https://bio.tools/regiosqm20> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3047,
         edam:topic_3064,
         edam:topic_3314 ;
@@ -404545,25 +426802,35 @@ Use by pasting a SMILES code from ChemDraw to get the regioselective prediction,
     sc:name "RegioSQM20" ;
     sc:url "http://regiosqm.org" .
 
-<https://bio.tools/registry> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0102,
-        edam:topic_0749,
-        edam:topic_3063 ;
-    sc:citation <https://doi.org/10.1017/CTS.2017.85>,
-        "pmcid:PMC6799705" ;
-    sc:description """Creating a Quality Improvement Project Registry.
-
-OBJECTIVES SPECIFIC AIMS: To create a searchable public registry of all Quality Improvement (QI) projects. To incentivize the medical professionals at UF Health to initiate quality improvement projects by reducing startup burden and providing a path to publishing results. To reduce the review effort performed by the internal review board on projects that are quality improvement Versus research. To foster publication of completed quality improvement projects. To assist the UF Health Sebastian Ferrero Office of Clinical Quality & Patient Safety in managing quality improvement across the hospital system. METHODS STUDY POPULATION: This project used a variant of the spiral software development model and principles from the ADDIE instructional design process for the creation of a registry that is web based.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'QIPR', 'UF', 'Sebastian Ferrero', 'Approver'""" ;
-    sc:license "Apache-2.0" ;
-    sc:name "registry" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6799705/" .
+<https://bio.tools/regliv> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1045" ;
+            sc:name "Species name" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1009" ;
+            sc:name "Protein name" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0121,
+        edam:topic_0204,
+        edam:topic_0623,
+        edam:topic_2640,
+        edam:topic_3172 ;
+    sc:citation <https://doi.org/10.1016/J.COMPBIOMED.2022.105825>,
+        "pubmed:35872412" ;
+    sc:description "Molecular regulation data of diverse living systems facilitating current multiomics research." ;
+    sc:featureList edam:operation_2421,
+        edam:operation_2428,
+        edam:operation_3803 ;
+    sc:isAccessibleForFree true ;
+    sc:name "REGLIV" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://idrblab.org/regliv/" .
 
 <https://bio.tools/regphos> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0121,
@@ -404588,7 +426855,7 @@ OBJECTIVES SPECIFIC AIMS: To create a searchable public registry of all Quality
         "Wen-Chi Chang" .
 
 <https://bio.tools/regprecise> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -404613,7 +426880,7 @@ OBJECTIVES SPECIFIC AIMS: To create a searchable public registry of all Quality
         "Pavel S. Novichkov" .
 
 <https://bio.tools/regpredict> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0622,
@@ -404628,7 +426895,7 @@ OBJECTIVES SPECIFIC AIMS: To create a searchable public registry of all Quality
     sc:url "http://regpredict.lbl.gov" .
 
 <https://bio.tools/regresshaplo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0781,
         edam:topic_3056,
@@ -404645,7 +426912,7 @@ OBJECTIVES SPECIFIC AIMS: To create a searchable public registry of all Quality
     biotools:primaryContact "Support" .
 
 <https://bio.tools/regrna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0659,
@@ -404664,8 +426931,28 @@ OBJECTIVES SPECIFIC AIMS: To create a searchable public registry of all Quality
     sc:url "http://regrna.mbc.nctu.edu.tw/" ;
     biotools:primaryContact "RegRNA Support" .
 
+<https://bio.tools/regscaf> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_0196,
+        edam:topic_0769 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC174>,
+        "pubmed:35333294" ;
+    sc:description "A Regression Approach to Scaffolding." ;
+    sc:featureList edam:operation_3192,
+        edam:operation_3216,
+        edam:operation_3659 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "RegScaf" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/lemontealala/RegScaf.git" .
+
 <https://bio.tools/regshape> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0654,
@@ -404681,7 +426968,7 @@ OBJECTIVES SPECIFIC AIMS: To create a searchable public registry of all Quality
     sc:url "https://github.com/ramseylab/regshape/" .
 
 <https://bio.tools/regsnps-asb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_2885,
         edam:topic_3169,
@@ -404700,8 +426987,34 @@ Expression quantitative trait loci (eQTL) analysis is useful for identifying gen
     sc:name "regSNPs-ASB" ;
     sc:url "https://github.com/SiwenX/RegSNPs-ASB" .
 
+<https://bio.tools/regsp> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2091" ;
+            sc:name "Accession" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_0203,
+        edam:topic_2229,
+        edam:topic_3168,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.7717/PEERJ.12707>,
+        "pmcid:PMC8710255",
+        "pubmed:35036172" ;
+    sc:description "A visualized application for homology-based gene searching and plotting using multiple reference sequences." ;
+    sc:featureList edam:operation_0490,
+        edam:operation_2421,
+        edam:operation_2422,
+        edam:operation_3663 ;
+    sc:isAccessibleForFree true ;
+    sc:name "ReGSP" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://ds.mju.ac.kr/regsp" .
+
 <https://bio.tools/regsplice> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3170,
@@ -404721,7 +427034,7 @@ Expression quantitative trait loci (eQTL) analysis is useful for identifying gen
     biotools:primaryContact "Lukas M. Weber" .
 
 <https://bio.tools/regstatgel> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0078 ;
     sc:citation <https://doi.org/10.6026/97320630006389>,
@@ -404735,7 +427048,7 @@ Expression quantitative trait loci (eQTL) analysis is useful for identifying gen
     sc:url "http://www.mediafire.com/FengLi/2DGelsoftware" .
 
 <https://bio.tools/regulomepa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0602,
         edam:topic_0749,
@@ -404753,7 +427066,7 @@ regulatory network P. aeruginosa.""" ;
     sc:url "http://www.regulome.pcyt.unam.mx" .
 
 <https://bio.tools/regulondb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -404776,10 +427089,10 @@ regulatory network P. aeruginosa.""" ;
 
 <https://bio.tools/regulus> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Expression data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0204,
@@ -404801,7 +427114,7 @@ regulatory network P. aeruginosa.""" ;
     sc:url "https://gitlab.com/gcollet/regulus" .
 
 <https://bio.tools/regutools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0114,
         edam:topic_0204,
         edam:topic_0602,
@@ -404822,7 +427135,7 @@ RegulonDB has collected, harmonized and centralized data from hundreds of experi
     sc:url "http://bioconductor.org/packages/regutools" .
 
 <https://bio.tools/regvar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_2885,
@@ -404839,7 +427152,7 @@ RegulonDB has collected, harmonized and centralized data from hundreds of experi
     sc:url "http://regvar.cbportal.org/" .
 
 <https://bio.tools/rehcstar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3053 ;
@@ -404854,7 +427167,7 @@ RegulonDB has collected, harmonized and centralized data from hundreds of experi
     sc:url "http://rehcstar.algolab.eu/" .
 
 <https://bio.tools/rehh> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3053 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/bts115> ;
@@ -404869,7 +427182,7 @@ RegulonDB has collected, harmonized and centralized data from hundreds of experi
     sc:url "http://cran.r-project.org/web/packages/rehh/" .
 
 <https://bio.tools/rehr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1371/journal.pone.0171784> ;
@@ -404884,8 +427197,30 @@ RegulonDB has collected, harmonized and centralized data from hundreds of experi
     biotools:primaryContact "Evangelos Kontopantelis",
         "GitHub Issues" .
 
+<https://bio.tools/reia> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0659,
+        edam:topic_2640,
+        edam:topic_3320,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.7150/IJBS.69458>,
+        "pmcid:PMC8990463",
+        "pubmed:35414795" ;
+    sc:description "A database for cancer A-to-I RNA editing with interactive analysis." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_3096,
+        edam:operation_3631 ;
+    sc:isAccessibleForFree true ;
+    sc:name "REIA" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://bioinfo-sysu.com/reia" .
+
 <https://bio.tools/reindeer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3174,
         edam:topic_3520 ;
@@ -404903,7 +427238,7 @@ REINDEER builds a data-structure that indexes k-mers and their abundances in a c
     sc:url "https://github.com/kamimrcht/REINDEER" .
 
 <https://bio.tools/reinvent> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2258,
         edam:topic_2275,
@@ -404922,7 +427257,7 @@ REINDEER builds a data-structure that indexes k-mers and their abundances in a c
     biotools:primaryContact "Marcus Olivecrona" .
 
 <https://bio.tools/reinvent-ai> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0154,
         edam:topic_0209,
@@ -404945,7 +427280,7 @@ Sampling: sampling.json can be used to start sampling. Requires a generative mod
     sc:url "https://github.com/MolecularAI/Reinvent" .
 
 <https://bio.tools/reitna-blood-vessel-segmentation> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -404962,7 +427297,7 @@ Sampling: sampling.json can be used to start sampling. Requires a generative mod
     biotools:primaryContact "Gautam Kumar" .
 
 <https://bio.tools/relate> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1093/nar/gkv1352> ;
@@ -404980,7 +427315,7 @@ Sampling: sampling.json can be used to start sampling. Requires a generative mod
     biotools:primaryContact "Training" .
 
 <https://bio.tools/relateadmix> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0622,
@@ -404998,7 +427333,7 @@ Sampling: sampling.json can be used to start sampling. Requires a generative mod
     sc:url "http://www.popgen.dk/software/index.php/Relate" .
 
 <https://bio.tools/relativenas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3382,
         edam:topic_3474 ;
@@ -405016,14 +427351,14 @@ Sampling: sampling.json can be used to start sampling. Requires a generative mod
 
 <https://bio.tools/relex> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ] ;
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_3652" ;
+            sc:name "Peptide identification" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Expression data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_2269,
@@ -405043,7 +427378,7 @@ Sampling: sampling.json can be used to start sampling. Requires a generative mod
     sc:url "http://fields.scripps.edu/relex/" .
 
 <https://bio.tools/relics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0659,
         edam:topic_0749,
@@ -405066,14 +427401,14 @@ RELICS is an analysis method for discovering functional sequences from tiling CR
 
 <https://bio.tools/relna> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0971" ;
-            sc:name "Article" ;
-            sc:sameAs "http://edamontology.org/data_0971" ] ;
+            sc:additionalType "http://edamontology.org/data_0971" ;
+            sc:encodingFormat "http://edamontology.org/format_1964" ;
+            sc:name "Article" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0972" ;
-            sc:name "Text mining report" ;
-            sc:sameAs "http://edamontology.org/data_0972" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0972" ;
+            sc:encodingFormat "http://edamontology.org/format_3464" ;
+            sc:name "Text mining report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3068 ;
@@ -405098,18 +427433,15 @@ RELICS is an analysis method for discovering functional sequences from tiling CR
 
 <https://bio.tools/remap> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2887" ;
-            sc:name "Nucleic acid sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2887" ],
+            sc:additionalType "http://edamontology.org/data_1289" ;
+            sc:name "Restriction map" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1289" ;
-            sc:name "Restriction map" ;
-            sc:sameAs "http://edamontology.org/data_1289" ] ;
+            sc:additionalType "http://edamontology.org/data_2887" ;
+            sc:name "Nucleic acid sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1276" ;
-            sc:name "Nucleic acid features" ;
-            sc:sameAs "http://edamontology.org/data_1276" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1276" ;
+            sc:name "Nucleic acid features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3125 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -405140,7 +427472,7 @@ RELICS is an analysis method for discovering functional sequences from tiling CR
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/remap.html" .
 
 <https://bio.tools/remap-pathway> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0749,
         edam:topic_3407 ;
@@ -405159,7 +427491,7 @@ QLab Cues and other work files for MITHC.""" ;
     sc:url "http://github.com/reMap" .
 
 <https://bio.tools/remedy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0089,
@@ -405184,22 +427516,19 @@ QLab Cues and other work files for MITHC.""" ;
 
 <https://bio.tools/remodiscovery> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ],
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:name "Pathway or network" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2070" ;
-            sc:name "Sequence motif (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_2070" ],
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:name "Gene expression data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Gene expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ] ;
+            sc:additionalType "http://edamontology.org/data_2070" ;
+            sc:name "Sequence motif (nucleic acid)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2070" ;
-            sc:name "Sequence motif (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_2070" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2070" ;
+            sc:encodingFormat "http://edamontology.org/format_2333" ;
+            sc:name "Sequence motif (nucleic acid)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602 ;
     sc:citation <https://doi.org/10.1186/gb-2006-7-5-r37> ;
@@ -405214,7 +427543,7 @@ QLab Cues and other work files for MITHC.""" ;
     sc:url "http://bioinformatics.intec.ugent.be/kmarchal/Supplementary_Information_Lemmens_2006/Index.html" .
 
 <https://bio.tools/remodnav> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3168,
         edam:topic_3444,
         edam:topic_3474 ;
@@ -405232,14 +427561,14 @@ This repository contains the raw data, the code to generate summary statistics,
 
 <https://bio.tools/removeexonlines> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1975" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1975" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0114,
@@ -405258,7 +427587,7 @@ This repository contains the raw data, the code to generate summary statistics,
     biotools:primaryContact "Galaxy Support Team" .
 
 <https://bio.tools/removelineartefact> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -405275,7 +427604,7 @@ This repository contains the raw data, the code to generate summary statistics,
     biotools:primaryContact "Constantino Carlos Reyes-Aldasoro" .
 
 <https://bio.tools/remp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3168,
         edam:topic_3295,
@@ -405298,7 +427627,7 @@ This repository contains the raw data, the code to generate summary statistics,
     biotools:primaryContact "Yinan Zheng" .
 
 <https://bio.tools/rems> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3263,
         edam:topic_3316,
@@ -405324,7 +427653,7 @@ This repository contains the raw data, the code to generate summary statistics,
     sc:url "http://www.csc.fi/rems" .
 
 <https://bio.tools/remus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -405347,7 +427676,7 @@ This repository contains the raw data, the code to generate summary statistics,
     biotools:primaryContact "ReMus team" .
 
 <https://bio.tools/remus-disease> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0625,
@@ -405366,7 +427695,7 @@ This repository contains the raw data, the code to generate summary statistics,
     biotools:primaryContact "Paweł Sztromwasser" .
 
 <https://bio.tools/renamedicom> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_3384,
@@ -405382,7 +427711,7 @@ This repository contains the raw data, the code to generate summary statistics,
     biotools:primaryContact "Nagi Hatoum" .
 
 <https://bio.tools/renano> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_2885,
@@ -405398,7 +427727,7 @@ This repository contains the raw data, the code to generate summary statistics,
     biotools:primaryContact <https://orcid.org/0000-0001-8601-1242> .
 
 <https://bio.tools/renato> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0204,
@@ -405422,7 +427751,7 @@ This repository contains the raw data, the code to generate summary statistics,
     sc:url "http://renato.bioinfo.cipf.es" .
 
 <https://bio.tools/renco> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0128,
@@ -405437,7 +427766,7 @@ This repository contains the raw data, the code to generate summary statistics,
     sc:url "http://sourceforge.net/projects/renco/" .
 
 <https://bio.tools/rene> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0602,
@@ -405453,7 +427782,7 @@ This repository contains the raw data, the code to generate summary statistics,
     sc:url "http://www.sysbio.polito.it/index.php/tools-and-downloads/item/220-rene" .
 
 <https://bio.tools/renet2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0218,
         edam:topic_0769,
@@ -405468,8 +427797,39 @@ This repository contains the raw data, the code to generate summary statistics,
     sc:url "https://github.com/sujunhao/RENET2" ;
     biotools:primaryContact <https://orcid.org/0000-0001-9711-6533> .
 
+<https://bio.tools/renoteweb> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0196,
+        edam:topic_0621,
+        edam:topic_0622,
+        edam:topic_3068,
+        edam:topic_3297 ;
+    sc:citation <https://doi.org/10.1016/J.GENE.2022.146819>,
+        "pubmed:36029977" ;
+    sc:description "Web platform for the improvement of assembly result and annotation of prokaryotic genomes." ;
+    sc:featureList edam:operation_0310,
+        edam:operation_2422,
+        edam:operation_3431 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "ReNoteWeb" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <http://biod.ufpa.br/renoteweb/files/Guide_ReNoteWeb.pdf> ;
+    sc:url "http://biod.ufpa.br/renoteweb/" .
+
 <https://bio.tools/rentrez> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_3053,
         edam:topic_3068,
@@ -405491,8 +427851,30 @@ rentrez is on CRAN, so you can get the latest stable release with install.packag
     sc:name "rentrez" ;
     sc:url "https://github.com/dwinter/rentrez_ms" .
 
+<https://bio.tools/renz> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0821,
+        edam:topic_3299,
+        edam:topic_3372 ;
+    sc:citation <https://doi.org/10.1186/S12859-022-04729-4>,
+        "pmcid:PMC9112463",
+        "pubmed:35578161" ;
+    sc:description "An R package for the analysis of enzyme kinetic data." ;
+    sc:featureList edam:operation_0334,
+        edam:operation_0337,
+        edam:operation_3659 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "renz" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://cran.r-project.org/web/packages/renz/renz.pdf> ;
+    sc:url "https://bitbucket.org/jcaledo/renz" .
+
 <https://bio.tools/rep2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0121,
@@ -405508,7 +427890,7 @@ rentrez is on CRAN, so you can get the latest stable release with install.packag
     biotools:primaryContact "Miguel A. Andrade-Navarro" .
 
 <https://bio.tools/repahr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0621,
         edam:topic_3047,
@@ -405530,7 +427912,7 @@ Before running RepAHR, need to edit 2 configure files: parameter_config_file and
     sc:url "https://github.com/bioinfomaticsCSU/RepAHR" .
 
 <https://bio.tools/repair> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script",
         "Web application" ;
     sc:author <http://orcid.org/0000-0001-8497-5152> ;
@@ -405544,8 +427926,25 @@ With RePAIR you can 1) determine prior parameters, 2) calculate sample size, and
     sc:name "RePAIR" ;
     sc:url "https://utrecht-university.shinyapps.io/repair/" .
 
+<https://bio.tools/repair_db> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_3071,
+        edam:topic_3277,
+        edam:topic_3303 ;
+    sc:citation <https://doi.org/10.1007/S00414-021-02756-Z>,
+        "pubmed:34997301" ;
+    sc:description "An online database for skeletal injuries of known ages." ;
+    sc:featureList edam:operation_3431 ;
+    sc:isAccessibleForFree true ;
+    sc:name "REPAIR" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://repair.orainc.com" .
+
 <https://bio.tools/repairsig> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0203,
         edam:topic_0602,
@@ -405562,7 +427961,7 @@ Reference implementation of RepairSig, a computational approach that accounts fo
     sc:url "https://github.com/ncbi/RepairSig" .
 
 <https://bio.tools/repairtoire> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0602,
@@ -405584,8 +427983,28 @@ Reference implementation of RepairSig, a computational approach that accounts fo
     biotools:primaryContact "Contact List",
         "REPAIRtoire Support" .
 
+<https://bio.tools/repark> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0622 ;
+    sc:citation <https://doi.org/10.1093/nar/gku210>,
+        "pmcid:PMC4027187",
+        "pubmed:24634442" ;
+    sc:description "Repetitive motif detection by Assembly of Repetitive K-mers." ;
+    sc:featureList edam:operation_0239 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Other" ;
+    sc:name "RepARK" ;
+    sc:operatingSystem "Mac",
+        "Windows" ;
+    sc:url "https://github.com/PhKoch/RepARK" .
+
 <https://bio.tools/repdenovo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0157,
         edam:topic_0196,
@@ -405601,14 +428020,14 @@ Reference implementation of RepairSig, a computational approach that accounts fo
 
 <https://bio.tools/repeat_explorer> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ] ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Nucleic acid sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0857" ;
-            sc:name "Sequence search results" ;
-            sc:sameAs "http://edamontology.org/data_0857" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0857" ;
+            sc:encodingFormat "http://edamontology.org/format_2310" ;
+            sc:name "Sequence search results" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0798,
@@ -405636,7 +428055,7 @@ Reference implementation of RepairSig, a computational approach that accounts fo
     biotools:primaryContact "Petr Novak" .
 
 <https://bio.tools/repeatanalyzer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3056,
@@ -405656,7 +428075,7 @@ Reference implementation of RepairSig, a computational approach that accounts fo
     biotools:primaryContact "Assefaw H. Gebremedhin" .
 
 <https://bio.tools/repeataround> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0157,
         edam:topic_0654,
@@ -405670,7 +428089,7 @@ Reference implementation of RepairSig, a computational approach that accounts fo
     sc:url "http://portugene.com/repeataround.html" .
 
 <https://bio.tools/repeatedhighdim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0085,
         edam:topic_3517,
@@ -405686,7 +428105,7 @@ Reference implementation of RepairSig, a computational approach that accounts fo
     sc:url "http://www.ams.med.uni-goettingen.de/software-en.shtml" .
 
 <https://bio.tools/repeatfs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0605,
         edam:topic_0749 ;
@@ -405703,7 +428122,7 @@ RepeatFS is a Python, FUSE-based file system with the goal of promoting scientif
     sc:url "https://github.com/ToniWestbrook/repeatfs" .
 
 <https://bio.tools/repeatmasker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0157 ;
@@ -405716,7 +428135,7 @@ RepeatFS is a Python, FUSE-based file system with the goal of promoting scientif
     sc:url "http://www.repeatmasker.org/" .
 
 <https://bio.tools/repeatmodeler> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0157 ;
     sc:description "De-novo repeat family identification and modeling package. At the heart of RepeatModeler are two de-novo repeat finding programs ( RECON and RepeatScout ) which employ complementary computational methods for identifying repeat element boundaries and family relationships from sequence data. RepeatModeler assists in automating the runs of RECON and RepeatScout given a genomic database and uses the output to build, refine and classify consensus models of putative interspersed repeats." ;
@@ -405728,7 +428147,7 @@ RepeatFS is a Python, FUSE-based file system with the goal of promoting scientif
     sc:url "http://www.repeatmasker.org/RepeatModeler/" .
 
 <https://bio.tools/repeatoire> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0157,
@@ -405744,7 +428163,7 @@ RepeatFS is a Python, FUSE-based file system with the goal of promoting scientif
     sc:url "http://wwwabi.snv.jussieu.fr/public/Repeatoire/" .
 
 <https://bio.tools/repeatprofiler> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0621,
         edam:topic_0625,
@@ -405763,7 +428182,7 @@ A tool for studying repetitive DNA dynamics using low-coverage, short-read data.
     sc:url "https://github.com/johnssproul/RepeatProfiler" .
 
 <https://bio.tools/repeatrunner> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0157,
         edam:topic_0654 ;
@@ -405777,26 +428196,24 @@ A tool for studying repetitive DNA dynamics using low-coverage, short-read data.
 
 <https://bio.tools/repeatsdb> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3021" ;
-            sc:name "UniProt accession" ;
-            sc:sameAs "http://edamontology.org/data_3021" ],
+            sc:additionalType "http://edamontology.org/data_2007" ;
+            sc:encodingFormat "http://edamontology.org/format_1964" ;
+            sc:name "UniProt keyword" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1127" ;
-            sc:name "PDB ID" ;
-            sc:sameAs "http://edamontology.org/data_1127" ],
+            sc:additionalType "http://edamontology.org/data_3021" ;
+            sc:name "UniProt accession" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2007" ;
-            sc:name "UniProt keyword" ;
-            sc:sameAs "http://edamontology.org/data_2007" ] ;
+            sc:additionalType "http://edamontology.org/data_1127" ;
+            sc:name "PDB ID" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ],
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:encodingFormat "http://edamontology.org/format_3464" ;
+            sc:name "Sequence features" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Sequence features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web API",
         "Web application" ;
@@ -405823,22 +428240,22 @@ A tool for studying repetitive DNA dynamics using low-coverage, short-read data.
 
 <https://bio.tools/repet> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3494" ;
-            sc:name "DNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3494" ] ;
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "DNA sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1270" ;
-            sc:name "Feature table" ;
-            sc:sameAs "http://edamontology.org/data_1270" ],
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "DNA sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ],
+            sc:additionalType "http://edamontology.org/data_1270" ;
+            sc:encodingFormat "http://edamontology.org/format_2206" ;
+            sc:name "Feature table" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3494" ;
-            sc:name "DNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3494" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_1939" ;
+            sc:name "Annotation track" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0157,
@@ -405857,7 +428274,7 @@ A tool for studying repetitive DNA dynamics using low-coverage, short-read data.
         "pubmed:21304975",
         "pubmed:24786468" ;
     sc:contributor "URGI" ;
-    sc:description """The REPET package integrates bioinformatics pipelines dedicated to detecte, annotate and analyse transposable elements (TEs) in genomic sequences. The main pipelines are (i) TEdenovo, which search for interspersed repeats, build consensus sequences and classify them according to TE features, and (ii)
+    sc:description """The REPET package integrates bioinformatics pipelines dedicated to detect, annotate and analyze transposable elements (TEs) in genomic sequences. The main pipelines are (i) TEdenovo, which search for interspersed repeats, build consensus sequences and classify them according to TE features, and (ii)
  TEannot, which mines a genome with a library of TE sequences, for instance the one produced by the TEdenovo pipeline, to provide TE annotations exported into GFF3 files.""" ;
     sc:featureList edam:operation_0237,
         edam:operation_0379 ;
@@ -405867,15 +428284,15 @@ A tool for studying repetitive DNA dynamics using low-coverage, short-read data.
     sc:operatingSystem "Linux",
         "Mac" ;
     sc:provider "URGI" ;
-    sc:softwareHelp <https://biosphere.france-bioinformatique.fr/wikia2/index.php/REPET_practical_course_urgi>,
-        <https://urgi.versailles.inra.fr/Tools/REPET>,
-        <https://urgi.versailles.inra.fr/Tools/REPET/INSTALL>,
-        <https://urgi.versailles.inra.fr/Tools/REPET/TEdenovo-tuto> ;
+    sc:softwareHelp <https://forgemia.inra.fr/urgi-anagen/wiki-repet/-/wikis/REPET-V3.0-tutorial>,
+        <https://urgi.versailles.inrae.fr/Tools/REPET>,
+        <https://urgi.versailles.inrae.fr/Tools/REPET/INSTALL>,
+        <https://urgi.versailles.inrae.fr/Tools/REPET/TEdenovo-tuto> ;
     sc:softwareVersion "v3.0" ;
-    sc:url "https://urgi.versailles.inra.fr/Tools/REPET" .
+    sc:url "https://urgi.versailles.inrae.fr/Tools/REPET" .
 
 <https://bio.tools/repetita> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btp232> ;
@@ -405890,8 +428307,20 @@ A tool for studying repetitive DNA dynamics using low-coverage, short-read data.
     sc:softwareVersion "1.0" ;
     sc:url "http://protein.bio.unipd.it/services" .
 
+<https://bio.tools/repexplore> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0085,
+        edam:topic_3360,
+        edam:topic_3473,
+        edam:topic_3474 ;
+    sc:citation "pubmed:25717197" ;
+    sc:description "RepExplore is a web-service for omics data analysis exploiting the information captured in the variance of technical replicates to provide more reliable and informative differential expression and abundance statistics, as well as low-dimensional data visualizations." ;
+    sc:name "RepExplore" ;
+    sc:url "https://lcsb-repexplore.uni.lu" .
+
 <https://bio.tools/repfdr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3127 ;
@@ -405906,7 +428335,7 @@ A tool for studying repetitive DNA dynamics using low-coverage, short-read data.
     sc:url "http://cran.r-project.org/web/packages/repfdr/index.html" .
 
 <https://bio.tools/repgenhmm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0804,
@@ -405924,7 +428353,7 @@ A tool for studying repetitive DNA dynamics using low-coverage, short-read data.
     biotools:primaryContact "Yuval Elthanati" .
 
 <https://bio.tools/rephine> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3293 ;
     sc:description "Recursive tree-fitting and search procedure which aims to address the problem of fitting phylogenies to sequence datasets that include both closely and distantly related species." ;
@@ -405937,7 +428366,7 @@ A tool for studying repetitive DNA dynamics using low-coverage, short-read data.
     sc:url "http://www.acaciamulga.net/#!about1/ckzk" .
 
 <https://bio.tools/rephine-drug> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0208,
@@ -405955,7 +428384,7 @@ A tool for studying repetitive DNA dynamics using low-coverage, short-read data.
     sc:url "https://github.com/coexps/Rephine" .
 
 <https://bio.tools/rephiner> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0084,
@@ -405976,7 +428405,7 @@ A tool for studying repetitive DNA dynamics using low-coverage, short-read data.
     biotools:primaryContact "Jason W. Shapiro" .
 
 <https://bio.tools/repitools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3173 ;
@@ -405997,7 +428426,7 @@ A tool for studying repetitive DNA dynamics using low-coverage, short-read data.
     biotools:primaryContact <http://orcid.org/0000-0002-3048-5518> .
 
 <https://bio.tools/repk> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0749,
@@ -406021,14 +428450,14 @@ A tool for studying repetitive DNA dynamics using low-coverage, short-read data.
 
 <https://bio.tools/replace_regex> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0605 ;
     sc:citation <https://doi.org/10.1093/nar/gkw343>,
@@ -406045,7 +428474,7 @@ A tool for studying repetitive DNA dynamics using low-coverage, short-read data.
     biotools:primaryContact "Galaxy Support Team" .
 
 <https://bio.tools/replicateoutliers> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0659,
         edam:topic_2269,
@@ -406064,7 +428493,7 @@ The function outlier_DZ returns a numeric identifier for the outlier status ( fo
     sc:url "http://github.com/matthew-seth-smith/replicateOutliers" .
 
 <https://bio.tools/repliscan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3127 ;
     sc:citation <https://doi.org/10.1186/s12859-017-1774-x> ;
@@ -406078,7 +428507,7 @@ The function outlier_DZ returns a numeric identifier for the outlier status ( fo
     biotools:primaryContact "Matthew W. Vaughn" .
 
 <https://bio.tools/reploc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0157,
         edam:topic_0621,
@@ -406100,7 +428529,7 @@ We developed a software named Repeat Locator (RepLoc), which quantifies the sequ
     sc:url "http://bis.zju.edu.cn/reploc" .
 
 <https://bio.tools/repo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0219,
         edam:topic_3071,
@@ -406123,14 +428552,12 @@ We developed a software named Repeat Locator (RepLoc), which quantifies the sequ
 
 <https://bio.tools/reporter> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ] ;
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:name "Mass spectrometry data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2886" ;
-            sc:name "Protein sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2886" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2886" ;
+            sc:name "Protein sequence record" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121 ;
     sc:description "Protein quantification based on reporter ions." ;
@@ -406146,14 +428573,14 @@ We developed a software named Repeat Locator (RepLoc), which quantifies the sequ
 
 <https://bio.tools/reportingtools> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Gene expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ] ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Gene expression data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1270" ;
-            sc:name "Feature table" ;
-            sc:sameAs "http://edamontology.org/data_1270" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1270" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Feature table" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3316 ;
@@ -406175,7 +428602,7 @@ We developed a software named Repeat Locator (RepLoc), which quantifies the sequ
         "Jessica L. Larson" .
 
 <https://bio.tools/repper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -406193,7 +428620,7 @@ We developed a software named Repeat Locator (RepLoc), which quantifies the sequ
     sc:url "http://protevo.eb.tuebingen.mpg.de/repper" .
 
 <https://bio.tools/repro> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0157 ;
@@ -406209,7 +428636,7 @@ We developed a software named Repeat Locator (RepLoc), which quantifies the sequ
     sc:url "http://www.ibi.vu.nl/programs/reprowww/" .
 
 <https://bio.tools/reprobe> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0632,
         edam:topic_0769,
@@ -406229,7 +428656,7 @@ Revised probe assignment and updated probe-set annotation in microarrays.""" ;
     sc:url "https://github.com/friederhadlich/rePROBE" .
 
 <https://bio.tools/reprocases> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3379,
         edam:topic_3397,
@@ -406244,7 +428671,7 @@ The “Reprocases” project aims to collect case reports of diseases with a low
     sc:url "http://www.evssar.org/reprocases" .
 
 <https://bio.tools/reproduce> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_2229,
         edam:topic_3170 ;
@@ -406259,8 +428686,35 @@ The “Reprocases” project aims to collect case reports of diseases with a low
     sc:name "reproduce" ;
     sc:url "http://www.xzlab.org/reproduce.html" .
 
+<https://bio.tools/reproducible_interactome> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2291" ;
+            sc:name "UniProt ID" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1009" ;
+            sc:name "Protein name" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0089,
+        edam:topic_0128,
+        edam:topic_0219,
+        edam:topic_0621,
+        edam:topic_3957 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC013>,
+        "pubmed:35015827" ;
+    sc:description "Semantic-based detection of redundancies to unify protein-protein interaction databases." ;
+    sc:featureList edam:operation_2422,
+        edam:operation_2492,
+        edam:operation_3436 ;
+    sc:isAccessibleForFree true ;
+    sc:name "Reproducible interactome" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://reproducible-interactome.genouest.org/" .
+
 <https://bio.tools/reprof> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3361 ;
     sc:citation "pubmed:8345525" ;
@@ -406276,10 +428730,9 @@ The “Reprocases” project aims to collect case reports of diseases with a low
 
 <https://bio.tools/reprogenomics_viewer> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2887" ;
-            sc:name "Nucleic acid sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2887" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2887" ;
+            sc:name "Nucleic acid sequence record" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3420 ;
     sc:author "Thomas Darde" ;
@@ -406299,7 +428752,7 @@ The “Reprocases” project aims to collect case reports of diseases with a low
     biotools:primaryContact "Frédéric Chalmel" .
 
 <https://bio.tools/reps> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3168,
@@ -406315,7 +428768,7 @@ The “Reprocases” project aims to collect case reports of diseases with a low
     sc:url "http://www.genomics.cn/en/navigation/show_navigation?nid=2732" .
 
 <https://bio.tools/reptar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0160,
@@ -406331,7 +428784,7 @@ The “Reprocases” project aims to collect case reports of diseases with a low
     biotools:primaryContact "RepTar Admin" .
 
 <https://bio.tools/reptile> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btq468> ;
@@ -406345,14 +428798,13 @@ The “Reprocases” project aims to collect case reports of diseases with a low
 
 <https://bio.tools/reputer> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2975" ;
-            sc:name "Nucleic acid sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_2975" ] ;
+            sc:additionalType "http://edamontology.org/data_2975" ;
+            sc:encodingFormat "http://edamontology.org/format_1211" ;
+            sc:name "Nucleic acid sequence (raw)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1276" ;
-            sc:name "Nucleic acid features" ;
-            sc:sameAs "http://edamontology.org/data_1276" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1276" ;
+            sc:name "Nucleic acid features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web API",
         "Web application" ;
@@ -406375,7 +428827,7 @@ The “Reprocases” project aims to collect case reports of diseases with a low
     sc:url "http://bibiserv.cebitec.uni-bielefeld.de/reputer" .
 
 <https://bio.tools/reqon> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3572 ;
@@ -406393,7 +428845,7 @@ The “Reprocases” project aims to collect case reports of diseases with a low
     biotools:primaryContact "Christopher Cabanski" .
 
 <https://bio.tools/rescan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0634,
         edam:topic_3175,
@@ -406414,7 +428866,7 @@ As well as controlling data flow into REscan using SAMtools (see Feed it only th
     sc:url "https://github.com/rlmcl/rescan" .
 
 <https://bio.tools/rescript> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0637,
         edam:topic_3168,
         edam:topic_3174,
@@ -406435,7 +428887,7 @@ RESCRIPt is a python 3 package to support a variety of operations for managing a
     sc:url "https://github.com/bokulich-lab/RESCRIPt" .
 
 <https://bio.tools/rescue-ese> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3320,
@@ -406454,7 +428906,7 @@ RESCRIPt is a python 3 package to support a variety of operations for managing a
         "Will Fairbrother" .
 
 <https://bio.tools/rescuenet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0654,
@@ -406470,8 +428922,31 @@ RESCRIPt is a python 3 package to support a variety of operations for managing a
         <http://bioinf.nuigalway.ie/RescueNet/manual_index.html> ;
     sc:url "http://bioinf.nuigalway.ie/RescueNet/" .
 
+<https://bio.tools/resectvol> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Desktop application" ;
+    sc:applicationSubCategory edam:topic_3315,
+        edam:topic_3384,
+        edam:topic_3421,
+        edam:topic_3444,
+        edam:topic_3452 ;
+    sc:citation <https://doi.org/10.1002/EPI4.12546>,
+        "pmcid:PMC8633465",
+        "pubmed:34608757" ;
+    sc:description "A tool to automatically segment and characterize lacunas in brain images." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3435,
+        edam:operation_3443 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "ResectVol" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://www.lniunicamp.com/resectvol" .
+
 <https://bio.tools/reseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0622,
         edam:topic_3168,
@@ -406499,7 +428974,7 @@ Even though sequencing biases and errors have been deeply researched to adequate
     sc:url "https://github.com/schmeing/ReSeq" .
 
 <https://bio.tools/reseqsim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3175 ;
     sc:citation <https://doi.org/10.1371/journal.pcbi.1000432> ;
@@ -406513,14 +428988,14 @@ Even though sequencing biases and errors have been deeply researched to adequate
 
 <https://bio.tools/resfinder> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_2546" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2955" ;
-            sc:name "Sequence report" ;
-            sc:sameAs "http://edamontology.org/data_2955" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2955" ;
+            sc:encodingFormat "http://edamontology.org/format_2333" ;
+            sc:name "Sequence report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0804 ;
     sc:citation <https://doi.org/10.1093/jac/dks261>,
@@ -406541,7 +429016,7 @@ Even though sequencing biases and errors have been deeply researched to adequate
     biotools:primaryContact "Ole Lund" .
 
 <https://bio.tools/resicon> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_2814 ;
@@ -406559,14 +429034,13 @@ Even though sequencing biases and errors have been deeply researched to adequate
 
 <https://bio.tools/resid> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2619" ;
-            sc:name "RESID ID" ;
-            sc:sameAs "http://edamontology.org/data_2619" ] ;
+            sc:additionalType "http://edamontology.org/data_2619" ;
+            sc:name "RESID ID" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0896" ;
-            sc:name "Protein report" ;
-            sc:sameAs "http://edamontology.org/data_0896" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0896" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Protein report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0166,
         edam:topic_0601 ;
@@ -406581,7 +429055,7 @@ Even though sequencing biases and errors have been deeply researched to adequate
     sc:url "http://pir.georgetown.edu/resid/" .
 
 <https://bio.tools/residb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0621,
@@ -406603,7 +429077,7 @@ Your rapid sequence similiarity-dependent database manager!.""" ;
     sc:url "https://residb.ait.ac.at/" .
 
 <https://bio.tools/residence-time> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3050,
         edam:topic_3318,
         edam:topic_3407,
@@ -406618,7 +429092,7 @@ Residence time (τ) is the average amount of time that particles spend in an eco
     sc:url "https://github.com/LennonLab/residence-time" .
 
 <https://bio.tools/residuefinder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0154,
@@ -406638,7 +429112,7 @@ Residence time (τ) is the average amount of time that particles spend in an eco
     sc:url "https://sourceforge.net/projects/residuefinder/" .
 
 <https://bio.tools/resirole> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0160,
         edam:topic_2269,
@@ -406662,7 +429136,7 @@ The set of scripts presented here contain a method for assessing the quality of
     sc:url "http://protein.som.geisinger.edu/ResiRole/" .
 
 <https://bio.tools/resistance_sniffer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2885,
         edam:topic_3293,
@@ -406679,7 +429153,7 @@ Resistance Sniffer: Prediction of Drug Resistance by Sequence Data.""" ;
     sc:url "http://resistance-sniffer.bi.up.ac.za/" .
 
 <https://bio.tools/resistomedb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0798,
         edam:topic_3174,
@@ -406696,7 +429170,7 @@ Resistance Sniffer: Prediction of Drug Resistance by Sequence Data.""" ;
     sc:url "http://www.resistomedb.com" .
 
 <https://bio.tools/resistoxplorer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0625,
         edam:topic_3168,
@@ -406712,8 +429186,47 @@ ResistoXplorer is a web-based, visual analytics tool to assist researchers to pe
     sc:name "ResistoXplorer" ;
     sc:url "http://www.resistoxplorer.no/ResistoXplorer" .
 
+<https://bio.tools/reslt> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_3382 ;
+    sc:citation <https://doi.org/10.1109/TPAMI.2022.3174892>,
+        "pubmed:35560104" ;
+    sc:description "Residual Learning for Long-tailed Recognition." ;
+    sc:featureList edam:operation_3436 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "ResLT" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/jiequancui/ResLT" .
+
+<https://bio.tools/resmap> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:name "Protein sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0593,
+        edam:topic_0736,
+        edam:topic_0820 ;
+    sc:citation <https://doi.org/10.3390/MEMBRANES12080773>,
+        "pmcid:PMC9416665",
+        "pubmed:36005688" ;
+    sc:description "Web Server for Predicting Residue-Specific Membrane-Association Propensities of Intrinsically Disordered Proteins." ;
+    sc:featureList edam:operation_0470,
+        edam:operation_2476,
+        edam:operation_3904 ;
+    sc:isAccessibleForFree true ;
+    sc:name "ReSMAP" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://pipe.rcc.fsu.edu/ReSMAPidp/" .
+
 <https://bio.tools/resourcerer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0621,
@@ -406733,8 +429246,28 @@ ResistoXplorer is a web-based, visual analytics tool to assist researchers to pe
     sc:url "http://compbio.dfci.harvard.edu/tgi/cgi-bin/magic/r1.pl" ;
     biotools:primaryContact "John Quackenbush" .
 
+<https://bio.tools/respan> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0099,
+        edam:topic_0769,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC427>,
+        "pubmed:35771600" ;
+    sc:description "A powerful batch correction model for scRNA-seq data through residual adversarial networks." ;
+    sc:featureList edam:operation_3891,
+        edam:operation_3927,
+        edam:operation_3935 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "ResPAN" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/AprilYuge/ResPAN" .
+
 <https://bio.tools/respipe> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0623,
         edam:topic_3174,
@@ -406754,7 +429287,7 @@ ResistoXplorer is a web-based, visual analytics tool to assist researchers to pe
     sc:url "https://gitlab.com/hsgweon/ResPipe" .
 
 <https://bio.tools/respiraconnosotros> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3263,
         edam:topic_3322,
@@ -406769,8 +429302,26 @@ ResistoXplorer is a web-based, visual analytics tool to assist researchers to pe
         "Windows" ;
     sc:url "http://respiraconnosotros.es" .
 
+<https://bio.tools/respirenet> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_3322,
+        edam:topic_3474,
+        edam:topic_3794 ;
+    sc:citation <https://doi.org/10.1109/EMBC46164.2021.9630091>,
+        "pubmed:34891348" ;
+    sc:description "A Deep Neural Network for Accurately Detecting Abnormal Lung Sounds in Limited Data Setting." ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "RespireNet" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://github.com/microsoft/RespireNet/blob/main/CODE_OF_CONDUCT.md> ;
+    sc:url "https://github.com/microsoft/RespireNet" .
+
 <https://bio.tools/response> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_3315 ;
     sc:citation <https://doi.org/10.3390/S20102960>,
@@ -406785,7 +429336,7 @@ Multi-criteria decision making algorithm based on TOPSIS.""" ;
     sc:url "https://github.com/chrismichailidou/topsisResponse" .
 
 <https://bio.tools/response_logic> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0625,
         edam:topic_0749 ;
@@ -406801,7 +429352,7 @@ Multi-criteria decision making algorithm based on TOPSIS.""" ;
     sc:url "http://github.com/GrossTor/response-logic" .
 
 <https://bio.tools/responsenet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
@@ -406829,7 +429380,7 @@ Multi-criteria decision making algorithm based on TOPSIS.""" ;
     biotools:primaryContact "Esti Yeger-Lotem" .
 
 <https://bio.tools/resprox> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0593,
@@ -406845,7 +429396,7 @@ Multi-criteria decision making algorithm based on TOPSIS.""" ;
     sc:url "http://www.resprox.ca/" .
 
 <https://bio.tools/restauro-g> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0219,
         edam:topic_0622,
@@ -406862,7 +429413,7 @@ Multi-criteria decision making algorithm based on TOPSIS.""" ;
     sc:url "http://restauro-g.iab.keio.ac.jp/" .
 
 <https://bio.tools/restfulse> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3168,
         edam:topic_3308 ;
@@ -406881,14 +429432,12 @@ Multi-criteria decision making algorithm based on TOPSIS.""" ;
 
 <https://bio.tools/restover> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2887" ;
-            sc:name "Nucleic acid sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2887" ] ;
+            sc:additionalType "http://edamontology.org/data_2887" ;
+            sc:name "Nucleic acid sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1276" ;
-            sc:name "Nucleic acid features" ;
-            sc:sameAs "http://edamontology.org/data_1276" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1276" ;
+            sc:name "Nucleic acid features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -406917,16 +429466,37 @@ Multi-criteria decision making algorithm based on TOPSIS.""" ;
     sc:softwareVersion "r6" ;
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/restover.html" .
 
+<https://bio.tools/restraintmaker> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0089,
+        edam:topic_0176,
+        edam:topic_3047 ;
+    sc:citation <https://doi.org/10.1007/S10822-022-00445-6>,
+        "pmcid:PMC8994745",
+        "pubmed:35314898" ;
+    sc:description "A graph-based approach to select distance restraints in free-energy calculations with dual topology." ;
+    sc:featureList edam:operation_1812,
+        edam:operation_2476,
+        edam:operation_3891,
+        edam:operation_4009 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "RestraintMaker" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://github.com/rinikerlab/restraintmaker/blob/main/CODE_OF_CONDUCT.md> ;
+    sc:url "https://github.com/rinikerlab/restraintmaker" .
+
 <https://bio.tools/restrict> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2887" ;
-            sc:name "Nucleic acid sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2887" ] ;
+            sc:additionalType "http://edamontology.org/data_2887" ;
+            sc:name "Nucleic acid sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1276" ;
-            sc:name "Nucleic acid features" ;
-            sc:sameAs "http://edamontology.org/data_1276" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1276" ;
+            sc:name "Nucleic acid features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3511 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -406957,34 +429527,34 @@ Multi-criteria decision making algorithm based on TOPSIS.""" ;
 
 <https://bio.tools/restrictfromsize> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2305" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
+            sc:name "Sequence trace" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1975" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_3003" ;
+            sc:name "Annotation track" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2306" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1975" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0078,
@@ -407004,18 +429574,18 @@ Multi-criteria decision making algorithm based on TOPSIS.""" ;
 
 <https://bio.tools/restrictsequencelist> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1093/nar/gkw343>,
@@ -407033,34 +429603,34 @@ Multi-criteria decision making algorithm based on TOPSIS.""" ;
 
 <https://bio.tools/restricttranscriptlist> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
+            sc:name "Sequence trace" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1975" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ],
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_3003" ;
+            sc:name "Annotation track" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2305" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2306" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1975" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3071 ;
@@ -407077,8 +429647,32 @@ Multi-criteria decision making algorithm based on TOPSIS.""" ;
     sc:url "https://urgi.versailles.inra.fr/Tools/REPET" ;
     biotools:primaryContact "Galaxy Support Team" .
 
+<https://bio.tools/restring> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0121,
+        edam:topic_0128,
+        edam:topic_0203,
+        edam:topic_0625,
+        edam:topic_3170 ;
+    sc:citation <https://doi.org/10.1038/S41598-021-02528-0>,
+        "pmcid:PMC8648753",
+        "pubmed:34873191" ;
+    sc:description "An open-source Python software to perform automatic functional enrichment retrieval, results aggregation and data visualization." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_2436,
+        edam:operation_2949,
+        edam:operation_3436 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "reString" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://string-db.org/" .
+
 <https://bio.tools/resultssift> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0154,
@@ -407100,7 +429694,7 @@ PROVEAN is useful for filtering sequence variants to identify nonsynonymous or i
     sc:url "http://sift.jcvi.org/" .
 
 <https://bio.tools/resultviewer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3518 ;
     sc:description "Browse the data analysis results of your own microarray experiments." ;
@@ -407113,14 +429707,14 @@ PROVEAN is useful for filtering sequence variants to identify nonsynonymous or i
 
 <https://bio.tools/retentionprediction> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2050" ;
-            sc:name "Molecular property (general)" ;
-            sc:sameAs "http://edamontology.org/data_2050" ] ;
+            sc:additionalType "http://edamontology.org/data_2050" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Molecular property (general)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3370,
@@ -407136,7 +429730,7 @@ PROVEAN is useful for filtering sequence variants to identify nonsynonymous or i
     sc:url "http://retentionprediction.org/" .
 
 <https://bio.tools/retina> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0625,
         edam:topic_3305,
@@ -407162,7 +429756,7 @@ If you want to know what will expect you here shortly, check out the reel:.
     sc:url "http://retina.com.pt" .
 
 <https://bio.tools/retinal-blood-vessel-extraction> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -407179,7 +429773,7 @@ If you want to know what will expect you here shortly, check out the reel:.
     biotools:primaryContact "Athi" .
 
 <https://bio.tools/retinal-blood-vessel-extractor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3315,
@@ -407199,7 +429793,7 @@ If you want to know what will expect you here shortly, check out the reel:.
     biotools:primaryContact "Ebtesam Ahmed" .
 
 <https://bio.tools/retinal-vessel-detection> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_3344,
         edam:topic_3384,
@@ -407221,7 +429815,7 @@ If you want to know what will expect you here shortly, check out the reel:.
     biotools:primaryContact "pangyuteng" .
 
 <https://bio.tools/retinal-vessel-tortuosity-analysis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -407238,7 +429832,7 @@ If you want to know what will expect you here shortly, check out the reel:.
     biotools:primaryContact "Maz M. Khansari" .
 
 <https://bio.tools/retip> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2258,
         edam:topic_3172,
         edam:topic_3314,
@@ -407263,14 +429857,13 @@ Retip: Retention Time Prediction for Compound Annotation in Untargeted Metabolom
 
 <https://bio.tools/retrieve_and_relate> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2526" ;
-            sc:name "Text data" ;
-            sc:sameAs "http://edamontology.org/data_2526" ] ;
+            sc:additionalType "http://edamontology.org/data_2526" ;
+            sc:encodingFormat "http://edamontology.org/format_2205" ;
+            sc:name "Text data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1193" ;
-            sc:name "Tool name (FASTA)" ;
-            sc:sameAs "http://edamontology.org/data_1193" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1193" ;
+            sc:name "Tool name (FASTA)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web API",
         "Web application" ;
@@ -407293,14 +429886,12 @@ Retip: Retention Time Prediction for Compound Annotation in Untargeted Metabolom
 
 <https://bio.tools/retrieve_matrix> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1114" ;
-            sc:name "Sequence motif identifier" ;
-            sc:sameAs "http://edamontology.org/data_1114" ] ;
+            sc:additionalType "http://edamontology.org/data_1114" ;
+            sc:name "Sequence motif identifier" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2070" ;
-            sc:name "Sequence motif (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_2070" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2070" ;
+            sc:name "Sequence motif (nucleic acid)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "Retrieve from the Regulatory sequence Analysis Tools a position-specific scoring matrix describing a transcription factor binding motif" ;
     sc:featureList edam:operation_2422 ;
     sc:license "AFL-3.0" ;
@@ -407308,7 +429899,7 @@ Retip: Retention Time Prediction for Compound Annotation in Untargeted Metabolom
     sc:url "http://rsat-tagc.univ-mrs.fr/rsat/retrieve-matrix_form.cgi" .
 
 <https://bio.tools/retro-cues> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2815,
         edam:topic_3304 ;
@@ -407326,7 +429917,7 @@ Accessing the contents of visual short-term memory (VSTM) is compromised by info
     sc:url "http://github.com/paulzerr/retrocues" .
 
 <https://bio.tools/retrobiocat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0821,
         edam:topic_2258,
         edam:topic_3068,
@@ -407343,7 +429934,7 @@ Any feedback is very welcome. Please email william.finnigan@manchester.ac.uk."""
     sc:url "http://retrobiocat.com" .
 
 <https://bio.tools/retromap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0654,
@@ -407359,7 +429950,7 @@ Any feedback is very welcome. Please email william.finnigan@manchester.ac.uk."""
     sc:url "http://www.burchsite.com/bioi/RetroMapHome.html" .
 
 <https://bio.tools/retropath_rl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2258,
@@ -407376,7 +429967,7 @@ Any feedback is very welcome. Please email william.finnigan@manchester.ac.uk."""
     sc:url "https://github.com/brsynth/RetroPathRL" .
 
 <https://bio.tools/retrorules> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web API",
         "Web service" ;
@@ -407397,18 +429988,17 @@ Any feedback is very welcome. Please email william.finnigan@manchester.ac.uk."""
 
 <https://bio.tools/retroscan> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3495" ;
-            sc:name "RNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3495" ] ;
+            sc:additionalType "http://edamontology.org/data_3495" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "RNA sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ],
+            sc:additionalType "http://edamontology.org/data_2955" ;
+            sc:name "Sequence report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2955" ;
-            sc:name "Sequence report" ;
-            sc:sameAs "http://edamontology.org/data_2955" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0769,
@@ -407432,14 +430022,12 @@ Any feedback is very welcome. Please email william.finnigan@manchester.ac.uk."""
 
 <https://bio.tools/retrotector> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:name "Sequence features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1186/1471-2105-10-S6-S4> ;
@@ -407455,7 +430043,7 @@ Any feedback is very welcome. Please email william.finnigan@manchester.ac.uk."""
     sc:url "http://retrotector.neuro.uu.se/" .
 
 <https://bio.tools/reupred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0157,
@@ -407471,7 +430059,7 @@ Any feedback is very welcome. Please email william.finnigan@manchester.ac.uk."""
     sc:url "http://protein.bio.unipd.it/reupred/" .
 
 <https://bio.tools/reva> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0219,
         edam:topic_0749,
@@ -407488,7 +430076,7 @@ Any feedback is very welcome. Please email william.finnigan@manchester.ac.uk."""
     sc:url "http://reva.gao-lab.org" .
 
 <https://bio.tools/reval> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3474 ;
     sc:citation <https://doi.org/10.1016/J.PATTER.2021.100228>,
@@ -407505,7 +430093,7 @@ Any feedback is very welcome. Please email william.finnigan@manchester.ac.uk."""
     biotools:primaryContact "Isotta Landi" .
 
 <https://bio.tools/revbayes> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3293,
@@ -407525,7 +430113,7 @@ Any feedback is very welcome. Please email william.finnigan@manchester.ac.uk."""
     biotools:primaryContact "Sebastian Höhna" .
 
 <https://bio.tools/reveal> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_2275,
@@ -407542,7 +430130,7 @@ Any feedback is very welcome. Please email william.finnigan@manchester.ac.uk."""
     sc:url "http://www.bioinformatics.cm-uj.krakow.pl/reveal/" .
 
 <https://bio.tools/revecor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_0622,
@@ -407563,7 +430151,7 @@ Any feedback is very welcome. Please email william.finnigan@manchester.ac.uk."""
     biotools:primaryContact "Yang Cao" .
 
 <https://bio.tools/reveel> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_3053,
@@ -407578,17 +430166,8 @@ Any feedback is very welcome. Please email william.finnigan@manchester.ac.uk."""
     sc:softwareHelp <http://reveel.stanford.edu/manual.html> ;
     sc:url "http://reveel.stanford.edu/" .
 
-<https://bio.tools/revegetation_preservation_springs_Arjuna_mount> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0611,
-        edam:topic_0780,
-        edam:topic_3810 ;
-    sc:citation <https://doi.org/10.20944/PREPRINTS201908.0313.V1> ;
-    sc:description "> VERY_LOW CONFIDENCE! | > HOMEPAGE MISSING! | > CORRECT NAME OF TOOL COULD ALSO BE 'forest revegetation preservation springs Arjuna', 'revegetation preservation springs Arjuna', 'revegetation Arjuna mount', 'revegetation Arjuna' | Community Empowerment Model for Forest Revegetation and Preservation the Area Around the Springs | The research objectives were (1) to examine the determinants of community empowerment towards the revegetation of Arjuna mount forests; (2) assessing the influence of geography and soil conditions on the revegetation of Arjuna mount forests; (3) reviewing the effect of Arjuna mount forest revegetation on the preservation of spring water sources and (4) formulate a model of community empowerment around the forest based on revegetation of Arjuna mount and preservation of the area around the springs. The method used was descriptive method" ;
-    sc:name "revegetation preservation springs Arjuna mount" ;
-    sc:url "https://doi.org/10.20944/PREPRINTS201908.0313.V1" .
-
 <https://bio.tools/revenant> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0130,
         edam:topic_0623,
@@ -407605,7 +430184,7 @@ Any feedback is very welcome. Please email william.finnigan@manchester.ac.uk."""
     sc:url "http://revenant.inf.pucp.edu.pe/" .
 
 <https://bio.tools/revercsp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3382,
         edam:topic_3500 ;
     sc:citation <https://doi.org/10.1007/978-3-030-52482-1_14>,
@@ -407620,7 +430199,7 @@ reverCSP is a tool that allows us to evaluate a CSP specification in both direct
     sc:url "https://github.com/tamarit/reverCSP" .
 
 <https://bio.tools/revgadgets> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3293,
@@ -407634,8 +430213,54 @@ reverCSP is a tool that allows us to evaluate a CSP specification in both direct
     sc:url "https://github.com/cmt2/RevGadgets" ;
     biotools:primaryContact <https://orcid.org/0000-0001-7263-7885> .
 
+<https://bio.tools/reviewer> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0157,
+        edam:topic_0622,
+        edam:topic_0625,
+        edam:topic_3673,
+        edam:topic_3676 ;
+    sc:citation <https://doi.org/10.1186/S13073-022-01085-Z>,
+        "pmcid:PMC9367089",
+        "pubmed:35948990" ;
+    sc:description "Haplotype-resolved visualization of read alignments in and around tandem repeats." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_0487,
+        edam:operation_3196,
+        edam:operation_3198,
+        edam:operation_3227 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "REViewer" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/illumina/REViewer" .
+
+<https://bio.tools/reviewr> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0769,
+        edam:topic_3063,
+        edam:topic_3263,
+        edam:topic_3337,
+        edam:topic_3577 ;
+    sc:citation <https://doi.org/10.1101/2021.10.25.21265151> ;
+    sc:description "ReviewR is a portable tool to help you explore data across different data models. Within ReviewR, you can browse patient data stored in either the OMOP or MIMIC-III data model." ;
+    sc:featureList edam:operation_2422,
+        edam:operation_3096 ;
+    sc:isAccessibleForFree true ;
+    sc:license "BSD-3-Clause" ;
+    sc:name "ReviewR" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://cran.r-project.org/web/packages/ReviewR/ReviewR.pdf> ;
+    sc:url "https://thewileylab.shinyapps.io/ReviewR/" .
+
 <https://bio.tools/revise> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0749,
@@ -407653,14 +430278,12 @@ reverCSP is a tool that allows us to evaluate a CSP specification in both direct
 
 <https://bio.tools/revseq> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2887" ;
-            sc:name "Nucleic acid sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2887" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2887" ;
+            sc:name "Nucleic acid sequence record" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -407690,7 +430313,7 @@ reverCSP is a tool that allows us to evaluate a CSP specification in both direct
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/revseq.html" .
 
 <https://bio.tools/revtrans> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0108,
@@ -407712,8 +430335,29 @@ reverCSP is a tool that allows us to evaluate a CSP specification in both direct
     biotools:primaryContact "Scientific problems: Anders Gorm Pedersen",
         "Technical problems: Rasmus Wernersson" .
 
+<https://bio.tools/revup> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0625,
+        edam:topic_0749,
+        edam:topic_3325,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC157>,
+        "pmcid:PMC9048665",
+        "pubmed:35289834" ;
+    sc:description "Online scoring system for regulatory variants implicated in rare diseases." ;
+    sc:featureList edam:operation_2422,
+        edam:operation_3225,
+        edam:operation_3226 ;
+    sc:isAccessibleForFree true ;
+    sc:name "RevUP" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://www.revup-classifier.ca" .
+
 <https://bio.tools/rew-isa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0203,
         edam:topic_0602,
@@ -407734,7 +430378,7 @@ REW-ISA is used to find potential local functional blocks (LFB) based on MeRIP-S
     sc:url "https://github.com/cst-cumt/REW-ISA" .
 
 <https://bio.tools/rexdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:citation <https://doi.org/10.1186/s13100-018-0144-1>,
         "pmcid:PMC6317226",
@@ -407746,7 +430390,7 @@ REW-ISA is used to find potential local functional blocks (LFB) based on MeRIP-S
     sc:url "http://repeatexplorer.org/?page_id=918" .
 
 <https://bio.tools/rexposome> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3063 ;
     sc:description "Package that allows to explore the exposome and to perform association analyses between exposures and health outcomes." ;
@@ -407765,7 +430409,7 @@ REW-ISA is used to find potential local functional blocks (LFB) based on MeRIP-S
     biotools:primaryContact "Carles Hernandez-Ferrer" .
 
 <https://bio.tools/rexprimer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0632,
@@ -407781,7 +430425,7 @@ REW-ISA is used to find potential local functional blocks (LFB) based on MeRIP-S
     sc:url "http://www4a.biotec.or.th/rexprimer/" .
 
 <https://bio.tools/rf-dl-malosite> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0601,
@@ -407799,7 +430443,7 @@ REW-ISA is used to find potential local functional blocks (LFB) based on MeRIP-S
     sc:url "https://github.com/dukkakc/DL-MaloSite-and-RF-MaloSite" .
 
 <https://bio.tools/rf-malosite> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0601,
         edam:topic_0621,
@@ -407820,7 +430464,7 @@ The best model has been included. Download all model parts and extracting the 1s
     sc:url "https://github.com/dukkakc/DL-MaloSite-and-RF-MaloSite" .
 
 <https://bio.tools/rf-net2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3053,
@@ -407836,7 +430480,7 @@ The best model has been included. Download all model parts and extracting the 1s
     biotools:primaryContact <https://orcid.org/0000-0003-3280-9050> .
 
 <https://bio.tools/rf-pseu> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_3300,
         edam:topic_3474 ;
@@ -407853,7 +430497,7 @@ One of the ubiquitous chemical modifications in RNA, pseudouridine modification
     sc:url "http://rfpsu.aibiochem.net/" .
 
 <https://bio.tools/rf_dymhc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_3127,
@@ -407866,7 +430510,7 @@ One of the ubiquitous chemical modifications in RNA, pseudouridine modification
     sc:url "http://www.bioinf.seu.edu.cn/Recombination/rf_dymhc.htm" .
 
 <https://bio.tools/rf_qsar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3336,
         edam:topic_3474 ;
@@ -407884,7 +430528,7 @@ One of the ubiquitous chemical modifications in RNA, pseudouridine modification
         "Minho Lee" .
 
 <https://bio.tools/rfam> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web API",
         "Web application" ;
@@ -407906,14 +430550,12 @@ One of the ubiquitous chemical modifications in RNA, pseudouridine modification
 
 <https://bio.tools/rfam_search> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ] ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:name "Nucleic acid sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0857" ;
-            sc:name "Sequence search results" ;
-            sc:sameAs "http://edamontology.org/data_0857" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0857" ;
+            sc:name "Sequence search results" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0623 ;
@@ -407936,7 +430578,7 @@ One of the ubiquitous chemical modifications in RNA, pseudouridine modification
     biotools:primaryContact "Rfam group" .
 
 <https://bio.tools/rfarm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0097,
@@ -407958,7 +430600,7 @@ rfaRm is an R package providing a client-side interface for the Rfam database of
     sc:url "https://bioconductor.org/packages/release/bioc/html/rfaRm.html" .
 
 <https://bio.tools/rfcca> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_2269,
@@ -407978,7 +430620,7 @@ rfaRm is an R package providing a client-side interface for the Rfam database of
     biotools:primaryContact "Cansu Alakuş" .
 
 <https://bio.tools/rfcoil> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0166,
@@ -407994,7 +430636,7 @@ rfaRm is an R package providing a client-side interface for the Rfam database of
     sc:url "http://protein.cau.edu.cn/RFCoil/" .
 
 <https://bio.tools/rfk45-ode-solver> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3344,
         edam:topic_3512 ;
@@ -408009,7 +430651,7 @@ rfaRm is an R package providing a client-side interface for the Rfam database of
     biotools:primaryContact "Alfredo Velazquez Ibañez" .
 
 <https://bio.tools/rfmix> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3053,
         edam:topic_3056,
@@ -408023,8 +430665,26 @@ rfaRm is an R package providing a client-side interface for the Rfam database of
     sc:softwareHelp <https://sites.google.com/site/rfmixlocalancestryinference/> ;
     sc:url "https://sites.google.com/site/rfmixlocalancestryinference/" .
 
+<https://bio.tools/rformer> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0634,
+        edam:topic_3063,
+        edam:topic_3382 ;
+    sc:citation <https://doi.org/10.1109/JBHI.2022.3187103>,
+        "pubmed:35767498" ;
+    sc:description "Transformer-Based Generative Adversarial Network for Real Fundus Image Restoration on a New Clinical Benchmark." ;
+    sc:featureList edam:operation_3443 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "RFormer" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/dengzhuo-AI/Real-Fundus" .
+
 <https://bio.tools/rfove> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3344,
@@ -408042,7 +430702,7 @@ rfaRm is an R package providing a client-side interface for the Rfam database of
     biotools:primaryContact "Costas Panagiotakis" .
 
 <https://bio.tools/rfplasmid> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0654,
         edam:topic_3174,
@@ -408064,7 +430724,7 @@ RFPlasmid comes with an option to train your own model if you provide it with co
     sc:url "http://klif.uu.nl/rfplasmid/" .
 
 <https://bio.tools/rfpr-idp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0130,
         edam:topic_0736,
@@ -408084,14 +430744,14 @@ Protein remote homology detection is one of the fundamental tasks in computation
 
 <https://bio.tools/rfpred> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ] ;
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence variations" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1772" ;
-            sc:name "Score" ;
-            sc:sameAs "http://edamontology.org/data_1772" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1772" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Score" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3676 ;
@@ -408108,15 +430768,35 @@ Protein remote homology detection is one of the fundamental tasks in computation
     sc:url "http://bioconductor.org/packages/release/bioc/html/rfPred.html" ;
     biotools:primaryContact "Hugo Varet" .
 
+<https://bio.tools/rfsa> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_2269,
+        edam:topic_3376 ;
+    sc:citation <https://doi.org/10.32614/RJ-2018-059>,
+        "pmcid:PMC9205535",
+        "pubmed:35719742" ;
+    sc:description "An R package for finding higher order interactions, and best subsets for statistical regression models" ;
+    sc:featureList edam:operation_3936 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-2.0" ;
+    sc:name "rFSA" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://cran.r-project.org/web/packages/rFSA/index.html>,
+        <https://cran.r-project.org/web/packages/rFSA/rFSA.pdf> ;
+    sc:url "https://github.com/joshuawlambert/rFSA" .
+
 <https://bio.tools/rfsc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "Reference-Free Sequence Classification Tool for DNA sequences in metagenomic samples." ;
     sc:name "RFSC" ;
     sc:softwareVersion "1.0" ;
     sc:url "https://github.com/cobilab/RFSC" .
 
 <https://bio.tools/rg4-seeker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_3170,
         edam:topic_3314,
@@ -408130,7 +430810,7 @@ Protein remote homology detection is one of the fundamental tasks in computation
     sc:url "https://github.com/TF-Chan-Lab/rG4-seeker" .
 
 <https://bio.tools/rgadem> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0160 ;
@@ -408147,8 +430827,18 @@ Protein remote homology detection is one of the fundamental tasks in computation
     sc:url "http://bioconductor.org/packages/release/bioc/html/rGADEM.html" ;
     biotools:primaryContact "Arnaud Droit" .
 
+<https://bio.tools/rgai> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0621 ;
+    sc:citation <https://doi.org/10.22541/AU.163601791.14513063/V1> ;
+    sc:description "rGAI is an R package for fitting the generalised abundance index to seasonal count data. The package provides a user interface for calculating a Generalised Abundance Index (GAI) for seasonal invertebrates, with multiple options for covariate inclusion, seasonal flight patterns and observed count distributions, along with the ability to conduct bootstraps to obtain measures of uncertainty for estimated parameter and GAI values." ;
+    sc:featureList edam:operation_3435 ;
+    sc:name "rGAI" ;
+    sc:url "https://github.com/calliste-fagard-jenkin/rGAI" .
+
 <https://bio.tools/rgalaxy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3168 ;
@@ -408166,7 +430856,7 @@ Protein remote homology detection is one of the fundamental tasks in computation
     biotools:primaryContact "BioConductor Package Maintainer" .
 
 <https://bio.tools/rgb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3071 ;
@@ -408181,7 +430871,7 @@ Protein remote homology detection is one of the fundamental tasks in computation
     sc:url "http://bioinformatics.ovsa.fr/72/Rgb_130" .
 
 <https://bio.tools/rgbd-sodsurvey> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3382,
         edam:topic_3474 ;
@@ -408196,7 +430886,7 @@ Protein remote homology detection is one of the fundamental tasks in computation
     sc:url "https://github.com/taozh2017/RGBD-SODsurvey" .
 
 <https://bio.tools/rgcode> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0634,
@@ -408216,7 +430906,7 @@ Glaucoma is a disease associated with the loss of retinal ganglion cells (RGCs),
     sc:url "https://gitlab.com/NCDRlab/rgcode" .
 
 <https://bio.tools/rgcop> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2229,
         edam:topic_3170,
@@ -408234,7 +430924,7 @@ Load the dataset from Data folder, and put the codes and Datasets in same path.
     sc:url "https://github.com/Snehalikalall/RgCop" .
 
 <https://bio.tools/rgd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0602,
@@ -408261,10 +430951,10 @@ Load the dataset from Data folder, and put the codes and Datasets in same path.
 
 <https://bio.tools/rgen> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3495" ;
-            sc:name "RNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3495" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3495" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "RNA sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0769,
@@ -408284,7 +430974,7 @@ Load the dataset from Data folder, and put the codes and Datasets in same path.
     sc:url "http://www.rgenome.net/" .
 
 <https://bio.tools/rgenesconverged> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0621,
         edam:topic_0625,
@@ -408304,14 +430994,14 @@ dinaIssakova/rgenesconverged: A Package for Estimating Probability of Convergent
 
 <https://bio.tools/rgestlibcomp> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3277 ;
     sc:citation <https://doi.org/10.1093/nar/gkw343>,
@@ -408328,7 +431018,7 @@ dinaIssakova/rgenesconverged: A Package for Estimating Probability of Convergent
     biotools:primaryContact "Galaxy Support Team" .
 
 <https://bio.tools/rgin> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_2885,
@@ -408347,7 +431037,7 @@ dinaIssakova/rgenesconverged: A Package for Estimating Probability of Convergent
     biotools:primaryContact "Hector Climente" .
 
 <https://bio.tools/rgmql> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3473 ;
     sc:description "This package brings the GenoMetric Query Language functionalities into the R environment. It is a high-level, declarative language to manage heterogeneous genomic datasets for biomedical purposes, using simple queries to process genomic regions and their metadata and properties. It adopts algorithms efficiently designed for big data using cloud-computing technologies allowing GMQL to run on modern infrastructures, in order to achieve scalability and high performance." ;
@@ -408363,7 +431053,7 @@ dinaIssakova/rgenesconverged: A Package for Estimating Probability of Convergent
     biotools:primaryContact "Simone Pallotta" .
 
 <https://bio.tools/rgpdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0749,
         edam:topic_0780,
@@ -408381,14 +431071,14 @@ dinaIssakova/rgenesconverged: A Package for Estimating Probability of Convergent
 
 <https://bio.tools/rgpicfixmate> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Sequence trace" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1093/nar/gkw343>,
@@ -408405,7 +431095,7 @@ dinaIssakova/rgenesconverged: A Package for Estimating Probability of Convergent
     biotools:primaryContact "Galaxy Support Team" .
 
 <https://bio.tools/rgraph2js> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -408424,7 +431114,7 @@ dinaIssakova/rgenesconverged: A Package for Estimating Probability of Convergent
     biotools:primaryContact "Stephane Cano" .
 
 <https://bio.tools/rgraphviz> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0092 ;
@@ -408443,18 +431133,18 @@ dinaIssakova/rgenesconverged: A Package for Estimating Probability of Convergent
 
 <https://bio.tools/rgreat> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ] ;
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_3003" ;
+            sc:name "Annotation track" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ],
+            sc:additionalType "http://edamontology.org/data_1669" ;
+            sc:encodingFormat "http://edamontology.org/format_3603" ;
+            sc:name "P-value" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1669" ;
-            sc:name "P-value" ;
-            sc:sameAs "http://edamontology.org/data_1669" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3603" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3673 ;
@@ -408472,7 +431162,7 @@ dinaIssakova/rgenesconverged: A Package for Estimating Probability of Convergent
     biotools:primaryContact "Zuguang Gu" .
 
 <https://bio.tools/rgsea> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203 ;
@@ -408491,14 +431181,14 @@ dinaIssakova/rgenesconverged: A Package for Estimating Probability of Convergent
 
 <https://bio.tools/rgsepd> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2769" ;
-            sc:name "Transcript ID" ;
-            sc:sameAs "http://edamontology.org/data_2769" ] ;
+            sc:additionalType "http://edamontology.org/data_2769" ;
+            sc:encodingFormat "http://edamontology.org/format_1958" ;
+            sc:name "Transcript ID" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1636" ;
-            sc:name "Heat map" ;
-            sc:sameAs "http://edamontology.org/data_1636" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1636" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Heat map" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3308 ;
@@ -408516,7 +431206,7 @@ dinaIssakova/rgenesconverged: A Package for Estimating Probability of Convergent
     biotools:primaryContact "Karl Stamm" .
 
 <https://bio.tools/rgv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3068,
@@ -408536,7 +431226,7 @@ dinaIssakova/rgenesconverged: A Package for Estimating Probability of Convergent
     sc:url "https://shiny.biostat.umn.edu/GV/" .
 
 <https://bio.tools/rhat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0097,
@@ -408550,7 +431240,7 @@ dinaIssakova/rgenesconverged: A Package for Estimating Probability of Convergent
     sc:url "https://github.com/derekguan/rHAT" .
 
 <https://bio.tools/rhdf5> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:author "Bernd Fischer",
@@ -408569,7 +431259,7 @@ dinaIssakova/rgenesconverged: A Package for Estimating Probability of Convergent
     biotools:primaryContact "Mike Smith" .
 
 <https://bio.tools/rhdf5client> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0092 ;
     sc:description "Provides functionality for reading data from h5serv server from within R." ;
@@ -408586,7 +431276,7 @@ dinaIssakova/rgenesconverged: A Package for Estimating Probability of Convergent
     biotools:primaryContact "Samuela Pollack" .
 
 <https://bio.tools/rhdf5lib> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:description "Provides C and C++ hdf5 libraries to R packages in a non-system-dependant manner." ;
@@ -408603,7 +431293,7 @@ dinaIssakova/rgenesconverged: A Package for Estimating Probability of Convergent
     biotools:primaryContact "Mike Smith" .
 
 <https://bio.tools/rhea> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0821,
@@ -408624,7 +431314,7 @@ Since December 2018, Rhea is the standard for enzyme annotation in UniProt.""" ;
     biotools:primaryContact "Contact Form" .
 
 <https://bio.tools/rhinella> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0659,
         edam:topic_2840,
@@ -408643,7 +431333,7 @@ Since December 2018, Rhea is the standard for enzyme annotation in UniProt.""" ;
     sc:url "http://rhinella.uncoma.edu.ar" .
 
 <https://bio.tools/rhivdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
@@ -408667,7 +431357,7 @@ Since December 2018, Rhea is the standard for enzyme annotation in UniProt.""" ;
     sc:url "http://www.way2drug.com/rhivdb" .
 
 <https://bio.tools/rhizobindingsites> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0749,
         edam:topic_0780,
@@ -408686,7 +431376,7 @@ The RhizoBindingSites database is a computer-assisted framework providing motif-
     sc:url "http://rhizobindingsites.ccg.unam.mx" .
 
 <https://bio.tools/rhizovision-explorer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0780,
         edam:topic_3298,
@@ -408703,7 +431393,7 @@ The RhizoBindingSites database is a computer-assisted framework providing motif-
     biotools:primaryContact <https://orcid.org/0000-0002-1995-9479> .
 
 <https://bio.tools/rhtslib> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3168 ;
@@ -408721,7 +431411,7 @@ The RhizoBindingSites database is a computer-assisted framework providing motif-
     biotools:primaryContact "BioConductor Package Maintainer" .
 
 <https://bio.tools/rhtyper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2830,
         edam:topic_2885,
@@ -408739,7 +431429,7 @@ The RhizoBindingSites database is a computer-assisted framework providing motif-
     sc:url "https://platform.dnanexus.com/app/RHtyper" .
 
 <https://bio.tools/rhvdm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0749,
@@ -408757,8 +431447,32 @@ The RhizoBindingSites database is a computer-assisted framework providing motif-
     sc:url "http://bioconductor.org/packages/release/bioc/html/rHVDM.html" ;
     biotools:primaryContact "Martino Barenco" .
 
+<https://bio.tools/rhybridfinder> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0121,
+        edam:topic_0154,
+        edam:topic_0804,
+        edam:topic_2640,
+        edam:topic_3520 ;
+    sc:citation <https://doi.org/10.1016/J.XPRO.2021.100875>,
+        "pmcid:PMC8551247",
+        "pubmed:34746858" ;
+    sc:description "An R package to process immunopeptidomic data for putative hybrid peptide discovery." ;
+    sc:featureList edam:operation_3644,
+        edam:operation_3646,
+        edam:operation_3767 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "RHybridFinder" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://cran.r-project.org/web/packages/RHybridFinder/RHybridFinder.pdf> ;
+    sc:url "https://cran.r-project.org/package=RHybridFinder" .
+
 <https://bio.tools/rhythm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0736,
@@ -408779,8 +431493,30 @@ The RhizoBindingSites database is a computer-assisted framework providing motif-
     sc:url "http://proteinformatics.charite.de/rhythm/" ;
     biotools:primaryContact "Peter Hildebrand" .
 
+<https://bio.tools/rhythmicdb> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0780,
+        edam:topic_3173,
+        edam:topic_3299,
+        edam:topic_3300 ;
+    sc:citation <https://doi.org/10.3389/FGENE.2022.882044>,
+        "pmcid:PMC9237250",
+        "pubmed:35774515" ;
+    sc:description "Database of circadian and ultradian transcripts in control tissues of kingdom-wide species." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_0380,
+        edam:operation_2422 ;
+    sc:isAccessibleForFree true ;
+    sc:name "RhythmicDB" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://rhythmicdb.css-mendel.it" .
+
 <https://bio.tools/riassigner> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3172 ;
     sc:description "RIAssigner is a python tool for retention index (RI) computation for GC-MS data." ;
@@ -408791,7 +431527,7 @@ The RhizoBindingSites database is a computer-assisted framework providing motif-
     sc:url "https://github.com/RECETOX/RIAssigner" .
 
 <https://bio.tools/ribbon> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
         edam:topic_0199,
@@ -408811,7 +431547,7 @@ Margin around a variant or manually entered coordinate where reads will be pulle
     sc:url "http://genomeribbon.com/" .
 
 <https://bio.tools/ribex> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0749 ;
     sc:citation "pubmed:15980564" ;
@@ -408826,7 +431562,7 @@ Margin around a variant or manually entered coordinate where reads will be pulle
     biotools:primaryContact "Support" .
 
 <https://bio.tools/riblast> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0099,
@@ -408844,7 +431580,7 @@ Margin around a variant or manually entered coordinate where reads will be pulle
         "Tsukasa Fukunag" .
 
 <https://bio.tools/ribo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0097,
@@ -408860,7 +431596,7 @@ Margin around a variant or manually entered coordinate where reads will be pulle
     sc:url "http://ribo.cs.mcgill.ca/" .
 
 <https://bio.tools/ribo-oddr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0632,
         edam:topic_0659,
         edam:topic_0769,
@@ -408876,7 +431612,7 @@ Margin around a variant or manually entered coordinate where reads will be pulle
     sc:url "https://github.com/fallerlab/Ribo-ODDR" .
 
 <https://bio.tools/ribo-pop> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0632,
         edam:topic_0659,
         edam:topic_0769,
@@ -408903,14 +431639,12 @@ If you're not using conda, you will need to install snakemake as well as all the
 
 <https://bio.tools/riboSeed> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1246" ;
-            sc:name "Sequence cluster (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1246" ] ;
+            sc:additionalType "http://edamontology.org/data_1246" ;
+            sc:name "Sequence cluster (nucleic acid)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0925" ;
-            sc:name "Sequence assembly" ;
-            sc:sameAs "http://edamontology.org/data_0925" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0925" ;
+            sc:name "Sequence assembly" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0196 ;
@@ -408930,7 +431664,7 @@ If you're not using conda, you will need to install snakemake as well as all the
     biotools:primaryContact <https://orcid.org/0000-0002-9035-2143> .
 
 <https://bio.tools/riboa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0203,
@@ -408950,7 +431684,7 @@ If you're not using conda, you will need to install snakemake as well as all the
     biotools:primaryContact "Edward P. O’Brien" .
 
 <https://bio.tools/ribocat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0097,
@@ -408969,8 +431703,30 @@ If you're not using conda, you will need to install snakemake as well as all the
     sc:url "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5238798/" ;
     biotools:primaryContact "Support" .
 
+<https://bio.tools/ribochat> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0108,
+        edam:topic_0203,
+        edam:topic_0605,
+        edam:topic_2229,
+        edam:topic_3170 ;
+    sc:citation <https://doi.org/10.1093/BIB/BBAB559>,
+        "pubmed:35043169" ;
+    sc:description "A chat-style web interface for analysis and annotation of ribosome profiling data." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_2436,
+        edam:operation_3435,
+        edam:operation_3799 ;
+    sc:isAccessibleForFree true ;
+    sc:name "RiboChat" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://db.cngb.org/ribobench/chat.html" .
+
 <https://bio.tools/ribocirc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0154,
@@ -408990,8 +431746,31 @@ If you're not using conda, you will need to install snakemake as well as all the
     biotools:primaryContact <https://orcid.org/0000-0003-3581-8892>,
         "Zhi Xie" .
 
+<https://bio.tools/ribocleaner> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0659,
+        edam:topic_0780,
+        edam:topic_3170,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC402>,
+        "pubmed:35731209" ;
+    sc:description "A pipeline to identify and quantify rRNA read contamination from RNA-seq data in plants." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_0435,
+        edam:operation_3800 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "riboCleaner" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://github.com/basf/riboCleaner/blob/main/docs/manual.md> ;
+    sc:url "https://github.com/basf/riboCleaner" .
+
 <https://bio.tools/ribodb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0160,
@@ -409008,7 +431787,7 @@ If you're not using conda, you will need to install snakemake as well as all the
     sc:url "https://ribodb.univ-lyon1.fr/ribodb/ribodb-in.cgi" .
 
 <https://bio.tools/ribodipa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0203,
         edam:topic_0621,
@@ -409024,7 +431803,7 @@ If you're not using conda, you will need to install snakemake as well as all the
     sc:url "https://github.com/jipingw/RiboDiPA" .
 
 <https://bio.tools/ribodoc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0108,
@@ -409048,8 +431827,32 @@ If you're not using conda, you will need to install snakemake as well as all the
     sc:softwareHelp <https://raw.githubusercontent.com/equipeGST/RiboDoc/main/config.yaml> ;
     sc:url "https://github.com/equipeGST/RiboDoc" .
 
+<https://bio.tools/ribodraw> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0097,
+        edam:topic_0166,
+        edam:topic_0659,
+        edam:topic_2229,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.1093/NARGAB/LQAB091>,
+        "pmcid:PMC8515840",
+        "pubmed:34661102" ;
+    sc:description "semiautomated two-dimensional drawing of RNA tertiary structure diagrams." ;
+    sc:featureList edam:operation_0295,
+        edam:operation_2441,
+        edam:operation_2486 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "RiboDraw" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://github.com/ribokit/RiboDraw/blob/master/tutorial/tutorial.md> ;
+    sc:url "https://github.com/DasLab/RiboDraw" .
+
 <https://bio.tools/riboexp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0108,
@@ -409070,7 +431873,7 @@ Train a neural network model to predict ribosome densities across a set of trans
     sc:url "https://github.com/Liuxg16/Riboexp" .
 
 <https://bio.tools/riboflow-switches> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0602,
         edam:topic_3297,
@@ -409091,37 +431894,16 @@ riboflow is a python package for classifying putative riboswitch sequences into
     sc:name "riboflow" ;
     sc:url "https://pypi.org/project/riboflow" .
 
-<https://bio.tools/riboflow_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0160,
-        edam:topic_0602,
-        edam:topic_3297,
-        edam:topic_3474,
-        edam:topic_3512 ;
-    sc:citation <https://doi.org/10.1101/868695> ;
-    sc:description """using deep learning to classify riboswitches with ~99% accuracy.
-
-Classifying Putative Riboswitch Sequences.
-
-RIBOFLOW - classifying riboswitches with >99% accuracy.
-
-riboflow is a python package for classifying putative riboswitch sequences into one of 32 classes with > 99% accuracy. It is based on a tensorflow deep learning model. riboflow has been tested using Python 3.5.2""" ;
-    sc:featureList edam:operation_0310,
-        edam:operation_0441,
-        edam:operation_2495 ;
-    sc:license "MIT" ;
-    sc:name "riboflow_autogenerated" ;
-    sc:url "https://pypi.org/project/riboflow" .
-
 <https://bio.tools/riboframe> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ] ;
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_2200" ;
+            sc:name "Sequence trace" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3028" ;
-            sc:name "Taxonomy" ;
-            sc:sameAs "http://edamontology.org/data_3028" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3028" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Taxonomy" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0637 ;
     sc:citation "pubmed:26635865" ;
@@ -409136,22 +431918,22 @@ riboflow is a python package for classifying putative riboswitch sequences into
 
 <https://bio.tools/ribogalaxy> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0848" ;
-            sc:name "Raw sequence" ;
-            sc:sameAs "http://edamontology.org/data_0848" ] ;
+            sc:additionalType "http://edamontology.org/data_0848" ;
+            sc:encodingFormat "http://edamontology.org/format_1932" ;
+            sc:name "Raw sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2969" ;
-            sc:name "Sequence image" ;
-            sc:sameAs "http://edamontology.org/data_2969" ],
+            sc:additionalType "http://edamontology.org/data_2969" ;
+            sc:encodingFormat "http://edamontology.org/format_3603" ;
+            sc:name "Sequence image" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_3006" ;
+            sc:name "Sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3603" ;
+            sc:name "Image" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0203 ;
     sc:author <http://orcid.org/0000-0002-3307-2938> ;
@@ -409177,7 +431959,7 @@ riboflow is a python package for classifying putative riboswitch sequences into
     sc:url "http://ribogalaxy.ucc.ie" .
 
 <https://bio.tools/ribomaker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0099 ;
@@ -409193,7 +431975,7 @@ riboflow is a python package for classifying putative riboswitch sequences into
     sc:url "https://absynth.issb.genopole.fr/Bioinformatics/tools/Ribomaker/" .
 
 <https://bio.tools/ribominer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0203,
         edam:topic_2229,
@@ -409219,7 +432001,7 @@ RiboMiner could offer other useful functions that would help users analyze ribos
     sc:url "https://github.com/xryanglab/RiboMiner" .
 
 <https://bio.tools/ribopicker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_3174,
@@ -409234,16 +432016,39 @@ RiboMiner could offer other useful functions that would help users analyze ribos
     sc:softwareHelp <http://ribopicker.sourceforge.net/manual.html> ;
     sc:url "http://ribopicker.sourceforge.net/" .
 
+<https://bio.tools/riboplotr> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0108,
+        edam:topic_0203,
+        edam:topic_0659,
+        edam:topic_3170,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.1186/S13007-021-00824-4>,
+        "pmcid:PMC8650366",
+        "pubmed:34876166" ;
+    sc:description "A Visualization Tool for Periodic Ribo-seq Reads." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_0436,
+        edam:operation_3198 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "RiboPlotR" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/hsinyenwu/RiboPlotR" .
+
 <https://bio.tools/riboprofiling> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1017" ;
-            sc:name "Sequence range" ;
-            sc:sameAs "http://edamontology.org/data_1017" ] ;
+            sc:additionalType "http://edamontology.org/data_1017" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Sequence range" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1921" ;
+            sc:name "Sequence alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0080 ;
@@ -409261,7 +432066,7 @@ RiboMiner could offer other useful functions that would help users analyze ribos
     biotools:primaryContact "A. Popa" .
 
 <https://bio.tools/riborex> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0203,
@@ -409280,7 +432085,7 @@ RiboMiner could offer other useful functions that would help users analyze ribos
         "Wenzheng Li" .
 
 <https://bio.tools/ribose-map> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0199,
@@ -409302,7 +432107,7 @@ RiboMiner could offer other useful functions that would help users analyze ribos
     sc:url "https://github.com/agombolay/ribose-map" .
 
 <https://bio.tools/riboseqr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3168 ;
@@ -409320,7 +432125,7 @@ RiboMiner could offer other useful functions that would help users analyze ribos
     biotools:primaryContact "Thomas J. Hardcastle" .
 
 <https://bio.tools/ribosome_profiling> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0203,
         edam:topic_0659,
@@ -409340,13 +432145,8 @@ Starting with a BAM file, this package provides the necessary functions for qual
     sc:name "ribosome profiling" ;
     sc:url "http://bioconductor.org/packages/release/bioc/html/RiboProfiling.html" .
 
-<https://bio.tools/ribosome_profiling_-> a sc:SoftwareApplication ;
-    sc:description "CD genomics provides a ribosome-profiling strategy that is based on the deep sequencing of ribosome-protected mRNA fragments and enables genome-wide investigation of translation with sub cordon resolution. Using nuclease digestion, the ribosome position and the translated message can be precisely determined by analyzing the protected ~30-nt area of the mRNA template." ;
-    sc:name "Ribosome Profiling -" ;
-    sc:url "https://www.cd-genomics.com/ribosome-profiling.html" .
-
 <https://bio.tools/ribostral> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0097,
@@ -409362,7 +432162,7 @@ Starting with a BAM file, this package provides the necessary functions for qual
     sc:url "http://rna.bgsu.edu/ribostral/" .
 
 <https://bio.tools/riboswitch_finder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0203,
@@ -409385,7 +432185,7 @@ Starting with a BAM file, this package provides the necessary functions for qual
     sc:url "http://riboswitch.bioapps.biozentrum.uni-wuerzburg.de/server.html" .
 
 <https://bio.tools/riboswitch_scanner> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3168,
@@ -409402,22 +432202,22 @@ Starting with a BAM file, this package provides the necessary functions for qual
 
 <https://bio.tools/ribotaper> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0925" ;
-            sc:name "Sequence assembly" ;
-            sc:sameAs "http://edamontology.org/data_0925" ],
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:encodingFormat "http://edamontology.org/format_2305" ;
+            sc:name "Sequence features" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
+            sc:additionalType "http://edamontology.org/data_0925" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence assembly" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0928" ;
-            sc:name "Gene expression profile" ;
-            sc:sameAs "http://edamontology.org/data_0928" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0928" ;
+            sc:encodingFormat "http://edamontology.org/format_3508" ;
+            sc:name "Gene expression profile" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0085 ;
     sc:citation <https://doi.org/10.1038/nmeth.3688> ;
@@ -409430,7 +432230,7 @@ Starting with a BAM file, this package provides the necessary functions for qual
     sc:url "https://ohlerlab.mdc-berlin.de/software/RiboTaper_126/" .
 
 <https://bio.tools/ribotoolkit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0203,
         edam:topic_0659,
@@ -409451,7 +432251,7 @@ Ribosome profiling (Ribo-seq) has revolutionized the translatomics field by mapp
     sc:url "http://rnabioinfor.tch.harvard.edu/RiboToolkit" .
 
 <https://bio.tools/ribotricer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0203,
         edam:topic_0621,
@@ -409468,7 +432268,7 @@ Ribosome profiling (Ribo-seq) has revolutionized the translatomics field by mapp
     sc:url "https://github.com/smithlabcode/ribotricer" .
 
 <https://bio.tools/ribovision> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0097,
@@ -409484,7 +432284,7 @@ Ribosome profiling (Ribo-seq) has revolutionized the translatomics field by mapp
     sc:url "http://apollo.chemistry.gatech.edu/RiboVision/" .
 
 <https://bio.tools/riboviz2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_2229,
@@ -409506,7 +432306,7 @@ Ribosome profiling (Ribo-seq) has revolutionized the translatomics field by mapp
         <https://orcid.org/0000-0003-3223-3426> .
 
 <https://bio.tools/ribovore> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library",
         "Suite" ;
@@ -409526,8 +432326,22 @@ Ribosomal RNA sequence analysis for GenBank submissions and database curation.""
     sc:name "Ribovore" ;
     sc:url "https://github.com/ncbi/ribovore" .
 
+<https://bio.tools/ribowaltz> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:description "riboWaltz is an R package for calculation of optimal P-site offsets, diagnostic analysis and visual inspection of ribosome profiling data." ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "riboWaltz" ;
+    sc:softwareVersion "1.0.0",
+        "1.0.1",
+        "1.1.0",
+        "1.2.0" ;
+    sc:url "https://github.com/LabTranslationalArchitectomics/riboWaltz" .
+
 <https://bio.tools/ricelncpedia> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_0780,
         edam:topic_2885,
@@ -409543,8 +432357,28 @@ Long non-coding RNAs (lncRNAs) play significant functions in various biological
     sc:name "RiceLncPedia" ;
     sc:url "http://218.199.68.191:10092/" .
 
+<https://bio.tools/ricencexp> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0659,
+        edam:topic_0780,
+        edam:topic_3170 ;
+    sc:citation <https://doi.org/10.1093/JXB/ERAC285>,
+        "pubmed:35762882" ;
+    sc:description "A Resource for Rice Non-coding RNA Co-Expression Atlas Based on Massive RNA-seq and Small-RNA seq Data." ;
+    sc:featureList edam:operation_3463,
+        edam:operation_3680,
+        edam:operation_3792 ;
+    sc:isAccessibleForFree true ;
+    sc:name "RiceNCexp" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://cbi.njau.edu.cn/RiceNCexp/" .
+
 <https://bio.tools/ricexpro> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0621,
@@ -409567,7 +432401,7 @@ Long non-coding RNAs (lncRNAs) play significant functions in various biological
     biotools:primaryContact "RiceXPro Support" .
 
 <https://bio.tools/rics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0593,
         edam:topic_3314,
@@ -409586,7 +432420,7 @@ Long non-coding RNAs (lncRNAs) play significant functions in various biological
     biotools:primaryContact "Molly Rossow" .
 
 <https://bio.tools/riddle> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2259,
         edam:topic_3053 ;
@@ -409601,7 +432435,7 @@ Long non-coding RNAs (lncRNAs) play significant functions in various biological
     sc:url "http://www.functionalnet.org/riddle/" .
 
 <https://bio.tools/rigapollo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
         edam:topic_0160 ;
@@ -409617,7 +432451,7 @@ Methods able to provide reliable protein alignments are crucial for many bioinfo
     sc:url "http://www.ibsquare.be/rigapollo" .
 
 <https://bio.tools/rigbox> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0632,
         edam:topic_0749,
         edam:topic_3304,
@@ -409636,7 +432470,7 @@ Rigbox is a high-performance, open-source MATLAB toolbox for managing behavioral
     sc:url "https://github.com/cortex-lab/Rigbox" .
 
 <https://bio.tools/rigd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0621,
         edam:topic_0780,
@@ -409657,7 +432491,7 @@ PIGD integrates the intronless genes data of six species of Rosaceae and makes a
     sc:url "http://www.rigdb.cn/" .
 
 <https://bio.tools/rigea> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2885,
         edam:topic_3308,
@@ -409674,7 +432508,7 @@ PIGD integrates the intronless genes data of six species of Rosaceae and makes a
     sc:url "https://github.com/lshen/RIGEA" .
 
 <https://bio.tools/rightfield> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3071,
         edam:topic_3572 ;
@@ -409696,7 +432530,7 @@ PIGD integrates the intronless genes data of six species of Rosaceae and makes a
     biotools:primaryContact "RightField" .
 
 <https://bio.tools/riken> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0089,
@@ -409718,14 +432552,12 @@ PIGD integrates the intronless genes data of six species of Rosaceae and makes a
 
 <https://bio.tools/rilogo> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0881" ;
-            sc:name "Secondary structure alignment (RNA)" ;
-            sc:sameAs "http://edamontology.org/data_0881" ] ;
+            sc:additionalType "http://edamontology.org/data_0881" ;
+            sc:name "Secondary structure alignment (RNA)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1708" ;
-            sc:name "RNA secondary structure image" ;
-            sc:sameAs "http://edamontology.org/data_1708" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1708" ;
+            sc:name "RNA secondary structure image" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0097 ;
@@ -409747,7 +432579,7 @@ PIGD integrates the intronless genes data of six species of Rosaceae and makes a
     biotools:primaryContact <http://orcid.org/0000-0003-4964-0685> .
 
 <https://bio.tools/rimmport> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0804 ;
@@ -409765,7 +432597,7 @@ PIGD integrates the intronless genes data of six species of Rosaceae and makes a
     biotools:primaryContact "Ravi Shankar" .
 
 <https://bio.tools/rims-seq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3168,
@@ -409788,7 +432620,7 @@ PIGD integrates the intronless genes data of six species of Rosaceae and makes a
     sc:url "https://github.com/Ettwiller/RIMS-seq/" .
 
 <https://bio.tools/rinchi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2258,
@@ -409806,26 +432638,28 @@ PIGD integrates the intronless genes data of six species of Rosaceae and makes a
     biotools:primaryContact "Jonathan M. Goodman" .
 
 <https://bio.tools/ring> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web API",
         "Web application" ;
     sc:applicationSubCategory edam:topic_2814 ;
-    sc:citation <https://doi.org/10.1093/bioinformatics/btr191> ;
-    sc:description "Residue interaction network generation method for Cytoscape." ;
+    sc:citation <https://doi.org/10.1093/bioinformatics/btr191>,
+        <https://doi.org/10.1093/nar/gkac365>,
+        "pubmed:35554554" ;
+    sc:description "Residue interaction network generator" ;
     sc:featureList edam:operation_2423 ;
     sc:name "RING" ;
     sc:operatingSystem "Linux",
         "Mac",
         "Windows" ;
     sc:provider "University of Padua, Department of Biomedical Sciences, BioComputing UP lab" ;
-    sc:softwareHelp <http://protein.bio.unipd.it/ring/help> ;
-    sc:softwareVersion "1.0" ;
-    sc:url "http://protein.bio.unipd.it/ring" ;
+    sc:softwareHelp <https://ring.biocomputingup.it/help> ;
+    sc:softwareVersion "3.0" ;
+    sc:url "https://ring.biocomputingup.it" ;
     biotools:primaryContact "Silvio C.E. Tosatto" .
 
 <https://bio.tools/ringer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0176,
@@ -409841,7 +432675,7 @@ PIGD integrates the intronless genes data of six species of Rosaceae and makes a
     sc:url "http://bl831.als.lbl.gov/ringer/" .
 
 <https://bio.tools/ringo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3169 ;
@@ -409861,7 +432695,7 @@ PIGD integrates the intronless genes data of six species of Rosaceae and makes a
     biotools:primaryContact <http://orcid.org/0000-0003-1471-1295> .
 
 <https://bio.tools/rintc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0659,
         edam:topic_2229,
@@ -409881,7 +432715,7 @@ to compile the source and obtain the executable "rintc". I succeed to compile th
     sc:url "https://github.com/eukaryo/rintc" .
 
 <https://bio.tools/rionorm2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3518,
         edam:topic_3697 ;
@@ -409900,7 +432734,7 @@ Large scale of simulation studies are conducted to compare the performance of Ri
     sc:url "https://github.com/yuanjing-ma/RioNorm2" .
 
 <https://bio.tools/ripplenet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3360,
         edam:topic_3382,
@@ -409917,7 +432751,7 @@ This repository contains files for RippleNet, a recurrent neural network with LS
     sc:url "http://github.com/espenhgn/RippleNet" .
 
 <https://bio.tools/ripseeker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3170 ;
@@ -409938,14 +432772,14 @@ This repository contains files for RippleNet, a recurrent neural network with LS
 
 <https://bio.tools/risa> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Report" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1270" ;
-            sc:name "Feature table" ;
-            sc:sameAs "http://edamontology.org/data_1270" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1270" ;
+            sc:encodingFormat "http://edamontology.org/format_3687" ;
+            sc:name "Feature table" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3361 ;
@@ -409965,7 +432799,7 @@ This repository contains files for RippleNet, a recurrent neural network with LS
     biotools:primaryContact <http://orcid.org/0000-0003-3499-8262> .
 
 <https://bio.tools/riscalw> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0634,
@@ -409983,18 +432817,17 @@ This repository contains files for RippleNet, a recurrent neural network with LS
 
 <https://bio.tools/risearch> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3495" ;
-            sc:name "RNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3495" ],
+            sc:additionalType "http://edamontology.org/data_3495" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "RNA sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3495" ;
-            sc:name "RNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3495" ] ;
+            sc:additionalType "http://edamontology.org/data_3495" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "RNA sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1588" ;
-            sc:name "DNA base pair stacking energies data" ;
-            sc:sameAs "http://edamontology.org/data_1588" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1588" ;
+            sc:name "DNA base pair stacking energies data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0097 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/bts519> ;
@@ -410010,7 +432843,7 @@ This repository contains files for RippleNet, a recurrent neural network with LS
     biotools:primaryContact "Anne Wenzel" .
 
 <https://bio.tools/risk-assessment-plots> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3360,
@@ -410028,7 +432861,7 @@ This repository contains files for RippleNet, a recurrent neural network with LS
     biotools:primaryContact "John Pickering" .
 
 <https://bio.tools/riso> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654 ;
@@ -410041,7 +432874,7 @@ This repository contains files for RippleNet, a recurrent neural network with LS
     sc:url "http://www.lx.it.pt/~asmc/software/riso.html" .
 
 <https://bio.tools/ritan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0085,
         edam:topic_0602 ;
@@ -410059,7 +432892,7 @@ This repository contains files for RippleNet, a recurrent neural network with LS
     biotools:primaryContact "Michael Zimmermann" .
 
 <https://bio.tools/river> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0085,
         edam:topic_0199,
@@ -410086,7 +432919,7 @@ This repository contains files for RippleNet, a recurrent neural network with LS
     biotools:primaryContact "Yungil Kim" .
 
 <https://bio.tools/rjags> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269 ;
     sc:author "Martyn Plummer" ;
@@ -410101,7 +432934,7 @@ from the posterior distribution of the parameters.""" ;
     biotools:primaryContact "Martyn Plummer" .
 
 <https://bio.tools/rjmcmcnucleosomes> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3168,
         edam:topic_3169,
@@ -410120,7 +432953,7 @@ from the posterior distribution of the parameters.""" ;
     biotools:primaryContact "Astrid Deschênes" .
 
 <https://bio.tools/rjprimers> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0157,
         edam:topic_0632 ;
@@ -410135,7 +432968,7 @@ from the posterior distribution of the parameters.""" ;
     biotools:primaryContact "Dr. Frank M. You" .
 
 <https://bio.tools/rjunbase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_2640,
         edam:topic_3170,
@@ -410153,7 +432986,7 @@ RNA splicing is an essential step of RNA processing for multi-exon genes, in whi
     sc:url "http://www.RJunBase.org" .
 
 <https://bio.tools/rkomics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0194,
         edam:topic_0196,
@@ -410179,7 +433012,7 @@ RNA splicing is an essential step of RNA processing for multi-exon genes, in whi
     sc:url "https://frebio.github.io/komics/" .
 
 <https://bio.tools/rl-csa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0080 ;
@@ -410194,7 +433027,7 @@ RNA splicing is an essential step of RNA processing for multi-exon genes, in whi
     sc:url "http://www.cs.bgu.ac.il/~negevcb/RL-CSA/" .
 
 <https://bio.tools/rlasso-cox> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
         edam:topic_2640,
@@ -410214,8 +433047,30 @@ RLassoCox is a package that implements the RLasso-Cox model proposed by Wei Liu.
     sc:name "RLasso-Cox" ;
     sc:url "http://bioconductor.org/packages/devel/bioc/html/RLassoCox.html" .
 
+<https://bio.tools/rlbase> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0097,
+        edam:topic_0102,
+        edam:topic_0203,
+        edam:topic_3170 ;
+    sc:citation <https://doi.org/10.1101/2021.11.01.466854> ;
+    sc:description "Exploration and analysis of R-loop mapping data with RLBase." ;
+    sc:featureList edam:operation_2422,
+        edam:operation_2429,
+        edam:operation_2939,
+        edam:operation_3222 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "RLBase" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://gccri.bishop-lab.uthscsa.edu/rlbase/" .
+
 <https://bio.tools/rldock> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0128,
@@ -410235,7 +433090,7 @@ RLDOCK is a source-availabe program for predicting the binding site and binding
     sc:url "https://github.com/Vfold-RNA/RLDOCK" .
 
 <https://bio.tools/rlims-p> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0218 ;
     sc:citation <https://doi.org/10.1109/TCBB.2014.2372765> ;
@@ -410249,8 +433104,31 @@ RLDOCK is a source-availabe program for predicting the binding site and binding
     sc:softwareVersion "2.0" ;
     sc:url "http://research.bioinformatics.udel.edu/rlimsp/" .
 
+<https://bio.tools/rlm> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0654,
+        edam:topic_3295,
+        edam:topic_3674 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAB663>,
+        "pmcid:PMC8686677",
+        "pubmed:34601556" ;
+    sc:description "Fast and simplified extraction of Read-Level Methylation metrics from bisulfite sequencing data." ;
+    sc:featureList edam:operation_3186,
+        edam:operation_3192,
+        edam:operation_3435,
+        edam:operation_3919 ;
+    sc:isAccessibleForFree true ;
+    sc:license "BSD-3-Clause" ;
+    sc:name "RLM" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://github.com/sarahet/RLM/wiki> ;
+    sc:url "https://github.com/sarahet/RLM" .
+
 <https://bio.tools/rlmm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2885,
@@ -410269,7 +433147,7 @@ RLDOCK is a source-availabe program for predicting the binding site and binding
     biotools:primaryContact "Nusrat Rabbee" .
 
 <https://bio.tools/rloom> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_2275,
@@ -410286,10 +433164,9 @@ RLDOCK is a source-availabe program for predicting the binding site and binding
 
 <https://bio.tools/rlz-graph> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1193" ;
-            sc:name "Tool name (FASTA)" ;
-            sc:sameAs "http://edamontology.org/data_1193" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1193" ;
+            sc:name "Tool name (FASTA)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0102,
@@ -410305,7 +433182,7 @@ RLDOCK is a source-availabe program for predicting the binding site and binding
     sc:url "https://github.com/Kingsford-Group/rlzgraph" .
 
 <https://bio.tools/rmaexpress> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0203 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/19.2.185>,
@@ -410324,7 +433201,7 @@ RLDOCK is a source-availabe program for predicting the binding site and binding
     sc:url "http://rmaexpress.bmbolstad.com/" .
 
 <https://bio.tools/rmagpie> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -410343,7 +433220,7 @@ RLDOCK is a source-availabe program for predicting the binding site and binding
     biotools:primaryContact "Camille Maumet" .
 
 <https://bio.tools/rmap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3295 ;
     sc:citation <https://doi.org/10.1186/1471-2105-14-184>,
@@ -410365,7 +433242,7 @@ RLDOCK is a source-availabe program for predicting the binding site and binding
         "Wen-Yu Chung" .
 
 <https://bio.tools/rmapper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
@@ -410383,7 +433260,7 @@ A tool for optical map assembly using de Bruijn graph.""" ;
     sc:url "https://github.com/kingufl/Rmapper" .
 
 <https://bio.tools/rmaps> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0092,
@@ -410403,14 +433280,14 @@ A tool for optical map assembly using de Bruijn graph.""" ;
 
 <https://bio.tools/rmassbank> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0957" ;
-            sc:name "Database metadata" ;
-            sc:sameAs "http://edamontology.org/data_0957" ] ;
+            sc:additionalType "http://edamontology.org/data_0957" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Database metadata" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:encodingFormat "http://edamontology.org/format_3245" ;
+            sc:name "Mass spectrometry data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3172 ;
@@ -410429,7 +433306,7 @@ A tool for optical map assembly using de Bruijn graph.""" ;
     biotools:primaryContact "RMassBank at Eawag" .
 
 <https://bio.tools/rmat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3169 ;
@@ -410447,8 +433324,76 @@ A tool for optical map assembly using de Bruijn graph.""" ;
     biotools:primaryContact "Arnaud Droit",
         "Raphael Gottardo" .
 
+<https://bio.tools/rmats> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
+            sc:name "Nucleic acid sequence" ] ;
+    bsc:output [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1669" ;
+            sc:name "P-value" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_3932" ;
+            sc:name "Q-value" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Workbench" ;
+    sc:applicationSubCategory edam:topic_3320 ;
+    sc:citation <https://doi.org/10.1073/pnas.1419161111>,
+        "pmcid:PMC4280593",
+        "pubmed:25480548" ;
+    sc:description "MATS is a computational tool to detect differential alternative splicing events from RNA-Seq data." ;
+    sc:featureList edam:operation_2499 ;
+    sc:isAccessibleForFree true ;
+    sc:license "BSD-2-Clause" ;
+    sc:name "rMATS" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://github.com/Xinglab/rmats-turbo> ;
+    sc:softwareVersion "4.1.2" ;
+    sc:url "http://rnaseq-mats.sourceforge.net/" .
+
+<https://bio.tools/rmblast> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:name "Sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Desktop application" ;
+    sc:applicationSubCategory edam:topic_0622 ;
+    sc:description "RMBlast is a RepeatMasker compatible version of the standard NCBI blastn program. The primary difference between this distribution and the NCBI distribution is the addition of a new program \"rmblastn\" for use with RepeatMasker and RepeatModeler." ;
+    sc:featureList edam:operation_2403 ;
+    sc:isAccessibleForFree true ;
+    sc:license "OSL-2.1" ;
+    sc:name "RMBlast" ;
+    sc:operatingSystem "Linux",
+        "Mac" ;
+    sc:softwareVersion "2.11.0" ;
+    sc:url "http://www.repeatmasker.org/RMBlast.html" .
+
+<https://bio.tools/rmcorrshiny> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_2269 ;
+    sc:citation <https://doi.org/10.12688/F1000RESEARCH.55027.2>,
+        "pmcid:PMC8456376",
+        "pubmed:34621514" ;
+    sc:description "This Shiny app computes and visualizes repeated measures correlation (rmcorr). Rmcorr is the common within-individual linear association for paired, repeated measures data. Rmcorr is conceptually similar to a null multilevel model: A fixed slope and varying intercept by participant." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3436,
+        edam:operation_3659 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "rmcorrShiny" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://lmarusich.shinyapps.io/shiny_rmcorr/" .
+
 <https://bio.tools/rmdisease> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_0749,
         edam:topic_2885,
@@ -410469,7 +433414,7 @@ Deciphering the biological impacts of millions of single nucleotide variants rem
     sc:url "http://www.xjtlu.edu.cn/biologicalsciences/rmd" .
 
 <https://bio.tools/rmea> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3068,
         edam:topic_3382 ;
@@ -410487,7 +433432,7 @@ The goal of rMEA is to provide a suite of tools useful to read, visualize and ex
     sc:url "https://github.com/kleinbub/rMEA" .
 
 <https://bio.tools/rmg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2258,
         edam:topic_3314,
         edam:topic_3474 ;
@@ -410500,10 +433445,10 @@ The goal of rMEA is to provide a suite of tools useful to read, visualize and ex
 
 <https://bio.tools/rmir> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:encodingFormat "http://edamontology.org/format_1926" ;
+            sc:name "Sequence record" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203 ;
@@ -410521,8 +433466,27 @@ The goal of rMEA is to provide a suite of tools useful to read, visualize and ex
     sc:url "http://bioconductor.org/packages/release/bioc/html/RmiR.html" ;
     biotools:primaryContact "Francesco Favero" .
 
+<https://bio.tools/rmisbeta> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_3077,
+        edam:topic_3172,
+        edam:topic_3308 ;
+    sc:citation <https://doi.org/10.1016/J.COMPBIOMED.2021.104911>,
+        "pubmed:34634637" ;
+    sc:description "A robust missing value imputation approach in transcriptomics and metabolomics data." ;
+    sc:featureList edam:operation_3557 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "rMisbeta" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://cran.r-project.org/web/packages/rMisbeta/rMisbeta.pdf> ;
+    sc:url "https://CRAN.R-project.org/package=rMisbeta" .
+
 <https://bio.tools/rmotif> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0749,
@@ -410538,7 +433502,7 @@ The goal of rMEA is to provide a suite of tools useful to read, visualize and ex
     sc:url "http://bioportal.weizmann.ac.il/~lapidotm/rMotif/html/" .
 
 <https://bio.tools/rmrnaseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3170,
         edam:topic_3315,
@@ -410560,7 +433524,7 @@ A differential expression analysis method for RNA-seq data from repeated-measure
     sc:url "https://cran.r-project.org/web/packages/rmRNAseq/index.html" .
 
 <https://bio.tools/rmscopii> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_2814 ;
     sc:description "Redirect protein structure files (PDB files) or RasMol scripts to multiple RasMol sessions." ;
@@ -410574,7 +433538,7 @@ A differential expression analysis method for RNA-seq data from repeated-measure
     sc:url "http://rmscopii.sourceforge.net/" .
 
 <https://bio.tools/rmsi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3383,
         edam:topic_3384,
@@ -410592,7 +433556,7 @@ A differential expression analysis method for RNA-seq data from repeated-measure
     biotools:primaryContact "Jesús Brezmes" .
 
 <https://bio.tools/rmsigui> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
@@ -410615,7 +433579,7 @@ A differential expression analysis method for RNA-seq data from repeated-measure
     sc:url "https://bitbucket.org/lababi/rmsigui/" .
 
 <https://bio.tools/rmsiproc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3382,
         edam:topic_3520 ;
@@ -410631,7 +433595,7 @@ Mass spectrometry imaging (MSI) can reveal biochemical information directly from
     sc:url "https://github.com/prafols/rMSIproc" .
 
 <https://bio.tools/rmta> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0769,
         edam:topic_3170,
@@ -410656,7 +433620,7 @@ RMTA can process FASTq files containing paired-end or single-end reads. Alternat
     sc:url "https://wiki.cyverse.org/wiki/display/DEapps/RMTA+v2.6.3" .
 
 <https://bio.tools/rmvar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_3320,
         edam:topic_3512,
@@ -410676,7 +433640,7 @@ We collected millions of variants, as well as thousands of RNA modification site
     sc:url "http://rmvar.renlab.org" .
 
 <https://bio.tools/rmvp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2885,
         edam:topic_3315,
@@ -410694,7 +433658,7 @@ We collected millions of variants, as well as thousands of RNA modification site
     sc:url "https://github.com/xiaolei-lab/rMVP" .
 
 <https://bio.tools/rna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0102 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btr617> ;
@@ -410709,8 +433673,33 @@ We collected millions of variants, as well as thousands of RNA modification site
     sc:url "http://iga-rna.sourceforge.net/" ;
     biotools:primaryContact "rNA Support" .
 
+<https://bio.tools/rna-combine> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0659,
+        edam:topic_2885,
+        edam:topic_3170,
+        edam:topic_3308,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.1186/S12859-021-04549-Y>,
+        "pmcid:PMC8740077",
+        "pubmed:34991454" ;
+    sc:description "A toolkit for comprehensive analyses on transcriptome data from different sequencing platforms." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_0484,
+        edam:operation_3223,
+        edam:operation_3680,
+        edam:operation_3800 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "RNA-combine" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/dongxuemin666/RNA-combine" .
+
 <https://bio.tools/rna-express> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3168,
@@ -410726,7 +433715,7 @@ We collected millions of variants, as well as thousands of RNA modification site
     sc:url "http://www.rnaexpress.org/" .
 
 <https://bio.tools/rna-mate> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_3170 ;
     sc:citation "pubmed:19648138" ;
@@ -410736,7 +433725,7 @@ We collected millions of variants, as well as thousands of RNA modification site
     sc:url "http://grimmond.imb.uq.edu.au/RNA-MATE/" .
 
 <https://bio.tools/rna-moip> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0097,
@@ -410757,14 +433746,14 @@ We collected millions of variants, as well as thousands of RNA modification site
 
 <https://bio.tools/rna-molp> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0850" ;
-            sc:name "Sequence set" ;
-            sc:sameAs "http://edamontology.org/data_0850" ],
+            sc:additionalType "http://edamontology.org/data_0850" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence set" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3496" ;
-            sc:name "RNA sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_3496" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3496" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "RNA sequence (raw)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0166,
@@ -410782,7 +433771,7 @@ We collected millions of variants, as well as thousands of RNA modification site
     biotools:primaryContact "Jérôme Waldispühl" .
 
 <https://bio.tools/rna-ribo-explorer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_2229,
@@ -410800,7 +433789,7 @@ We collected millions of variants, as well as thousands of RNA modification site
     sc:url "https://gite.lirmm.fr/rivals/RRE" .
 
 <https://bio.tools/rna-seqc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_3170 ;
@@ -410817,7 +433806,7 @@ We collected millions of variants, as well as thousands of RNA modification site
     sc:url "http://www.broadinstitute.org/cancer/cga/rna-seqc" .
 
 <https://bio.tools/rna-skim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0203,
@@ -410831,8 +433820,32 @@ We collected millions of variants, as well as thousands of RNA modification site
     sc:softwareHelp <http://www.csbio.unc.edu/rs/> ;
     sc:url "http://www.csbio.unc.edu/rs/" .
 
+<https://bio.tools/rna-ssnv> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0199,
+        edam:topic_2640,
+        edam:topic_3170,
+        edam:topic_3474,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.3389/FGENE.2022.865313>,
+        "pmcid:PMC9279659",
+        "pubmed:35846154" ;
+    sc:description "A Reliable Somatic Single Nucleotide Variant Identification Framework for Bulk RNA-Seq Data." ;
+    sc:featureList edam:operation_0335,
+        edam:operation_3196,
+        edam:operation_3227,
+        edam:operation_3436 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "RNA-SSNV" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/pmglab/RNA-SSNV" .
+
 <https://bio.tools/rna-stability> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library",
         "Workflow" ;
@@ -410848,10 +433861,10 @@ We collected millions of variants, as well as thousands of RNA modification site
 
 <https://bio.tools/rna-targeting> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0749,
@@ -410874,7 +433887,7 @@ We have also enabled custom sequence input for CasRx guide design.""" ;
     sc:url "http://RNAtargeting.org" .
 
 <https://bio.tools/rna2dmap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0097,
@@ -410890,7 +433903,7 @@ We have also enabled custom sequence input for CasRx guide design.""" ;
     sc:url "http://www.rna.icmb.utexas.edu/SIM/4F/RNA2DMap/" .
 
 <https://bio.tools/rnaQUAST> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3170,
@@ -410909,22 +433922,8 @@ We have also enabled custom sequence input for CasRx guide design.""" ;
     sc:url "http://cab.spbu.ru/software/rnaquast/" ;
     biotools:primaryContact "Andrey D. Prjibelski" .
 
-<https://bio.tools/rnaSPAdes_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3170,
-        edam:topic_3308,
-        edam:topic_3673 ;
-    sc:citation <https://doi.org/10.1093/GIGASCIENCE/GIZ100>,
-        "pmcid:PMC6736328",
-        "pubmed:31494669" ;
-    sc:description "> NAME (rnaSPAdes) SIMILAR TO (PUB. DIFFERENT) bio.tools/rnaspades (rnaspades) | a de novo transcriptome assembler and its application to RNA-Seq data | rnaSPAdes – Center for Algorithmic Biotechnology | While RNA-Seq is commonly used for model organisms with well-known genomes, multiple projects study species with previously unsequenced genome. Since finishing a genome can be costly and challenging (especially when the genome is large), RNA-Seq can be used for the purpose of de novo transcriptome a.. | While RNA-Seq is commonly used for model organisms with well-known genomes, multiple projects study species with previously unsequenced genome | 2.1. Downloading SPAdes Linux binaries | 2.2. Downloading SPAdes binaries for Mac" ;
-    sc:featureList edam:operation_3216,
-        edam:operation_3258,
-        edam:operation_3644 ;
-    sc:name "rnaSPAdes_autogenerated" ;
-    sc:url "http://cab.spbu.ru/software/rnaspades/" .
-
 <https://bio.tools/rna_analyzer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0097,
@@ -410947,7 +433946,7 @@ We have also enabled custom sequence input for CasRx guide design.""" ;
     biotools:primaryContact "Thomas Dandekar" .
 
 <https://bio.tools/rna_compass> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3308,
@@ -410966,7 +433965,7 @@ We have also enabled custom sequence input for CasRx guide design.""" ;
     biotools:primaryContact "Guorong Xu" .
 
 <https://bio.tools/rna_cossmos> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0097,
@@ -410988,7 +433987,7 @@ We have also enabled custom sequence input for CasRx guide design.""" ;
     biotools:primaryContact "Contact form" .
 
 <https://bio.tools/rna_frabase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099 ;
     sc:citation <https://doi.org/10.1186/1471-2105-11-231> ;
@@ -411003,7 +434002,7 @@ We have also enabled custom sequence input for CasRx guide design.""" ;
     sc:url "http://rnafrabase.ibch.poznan.pl/" .
 
 <https://bio.tools/rna_helicase_database> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0099,
@@ -411023,7 +434022,7 @@ We have also enabled custom sequence input for CasRx guide design.""" ;
     biotools:primaryContact "Eckhard Jankowsky" .
 
 <https://bio.tools/rna_movies> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0097,
@@ -411045,13 +434044,8 @@ We have also enabled custom sequence input for CasRx guide design.""" ;
     sc:url "http://bibiserv.techfak.uni-bielefeld.de/rnamovies/" ;
     biotools:primaryContact "Jan Krüger" .
 
-<https://bio.tools/rna_sequencing> a sc:SoftwareApplication ;
-    sc:description "CD Genomics has been providing the accurate and affordable RNA-Seq (RNA sequencing) service for decades. We combine both Illumina (short reads) and PacBio (long reads) platforms to obtain the transcriptome that allows de novo assembly or re-sequencing for bacteria, plants, animals and humans. CD Genomics provides full RNA sequencing service package including sample standardization, library construction, deep sequencing, raw data quality control, genome assembly, and customized bioinformatics analysis. We can tailor this pipeline to your research interest. If you have additional requirements or questions, please feel free to contact us." ;
-    sc:name "RNA sequencing" ;
-    sc:url "https://www.cd-genomics.com/RNA-Seq-Transcriptome.html" .
-
 <https://bio.tools/rna_studio> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0097,
@@ -411072,7 +434066,7 @@ We have also enabled custom sequence input for CasRx guide design.""" ;
     biotools:primaryContact "Biefeld University Bioinformatics Server" .
 
 <https://bio.tools/rnaagecalc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3170,
         edam:topic_3295,
@@ -411089,7 +434083,7 @@ An R package for the analysis of tiling array data that incorporates the correla
     sc:url "http://www.ams.sunysb.edu/~pfkuan/softwares.html#RNAAgeCalc" .
 
 <https://bio.tools/rnaalifoldws> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0097 ;
@@ -411103,7 +434097,7 @@ An R package for the analysis of tiling array data that incorporates the correla
     sc:url "http://rna.tbi.univie.ac.at/cgi-bin/RNAalifold.cgi" .
 
 <https://bio.tools/rnaalishapes> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0097,
@@ -411119,7 +434113,7 @@ An R package for the analysis of tiling array data that incorporates the correla
     sc:url "http://bibiserv2.cebitec.uni-bielefeld.de/rnaalishapes" .
 
 <https://bio.tools/rnabindr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0099,
@@ -411142,7 +434136,7 @@ An R package for the analysis of tiling array data that incorporates the correla
     biotools:primaryContact "RNABindR team" .
 
 <https://bio.tools/rnabindrplus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0099 ;
@@ -411162,7 +434156,7 @@ An R package for the analysis of tiling array data that incorporates the correla
     sc:url "http://ailab1.ist.psu.edu/RNABindRPlus/" .
 
 <https://bio.tools/rnablueprint> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0092,
@@ -411180,7 +434174,7 @@ An R package for the analysis of tiling array data that incorporates the correla
         "Sven Findeiß" .
 
 <https://bio.tools/rnabor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0082,
@@ -411201,8 +434195,28 @@ An R package for the analysis of tiling array data that incorporates the correla
     sc:url "http://bioinformatics.bc.edu/clotelab/RNAbor/" ;
     biotools:primaryContact "Clote Structural Biology Lab" .
 
+<https://bio.tools/rnabpdb> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0082,
+        edam:topic_0097,
+        edam:topic_0099,
+        edam:topic_0154 ;
+    sc:citation <https://doi.org/10.1007/S12539-022-00528-W>,
+        "pubmed:35705797" ;
+    sc:description "Molecular Modeling of RNA Structure-From Base Pair Analysis in Crystals to Structure Prediction." ;
+    sc:featureList edam:operation_0474,
+        edam:operation_2441,
+        edam:operation_2996 ;
+    sc:isAccessibleForFree true ;
+    sc:name "RNABPDB" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://hdrnas.saha.ac.in/rnabpdb" .
+
 <https://bio.tools/rnabrowse> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0099,
@@ -411219,7 +434233,7 @@ An R package for the analysis of tiling array data that incorporates the correla
     sc:url "https://mulcyber.toulouse.inra.fr/plugins/mediawiki/wiki/ngspipelines/index.php/RNA-seq_denovo" .
 
 <https://bio.tools/rnacentral> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0659 ;
     sc:citation "pubmed:25352543",
@@ -411238,7 +434252,7 @@ An R package for the analysis of tiling array data that incorporates the correla
     sc:url "http://rnacentral.org" .
 
 <https://bio.tools/rnaclust> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0099,
@@ -411255,7 +434269,7 @@ An R package for the analysis of tiling array data that incorporates the correla
     sc:url "http://www.bioinf.uni-leipzig.de/~kristin/Software/RNAclust/" .
 
 <https://bio.tools/rnacluster> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0097,
@@ -411271,7 +434285,7 @@ An R package for the analysis of tiling array data that incorporates the correla
     sc:url "http://csbl.bmb.uga.edu/publications/materials/qiliu/RNACluster.html" .
 
 <https://bio.tools/rnacmap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0097,
         edam:topic_0099,
@@ -411288,7 +434302,7 @@ An R package for the analysis of tiling array data that incorporates the correla
     sc:url "https://sparks-lab.org/server/rnacmap/" .
 
 <https://bio.tools/rnacommender> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Plug-in" ;
     sc:applicationSubCategory edam:topic_0082,
@@ -411305,8 +434319,24 @@ An R package for the analysis of tiling array data that incorporates the correla
     sc:softwareHelp <http://rnacommender.disi.unitn.it/> ;
     sc:url "http://rnacommender.disi.unitn.it" .
 
+<https://bio.tools/rnacon> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:citation <https://doi.org/10.1186/1471-2164-15-127>,
+        "pmcid:PMC3925371",
+        "pubmed:24521294" ;
+    sc:description "RNAcon is a web-server for the prediction and classification of non-coding RNAs. It uses SVM-based model for the discrimination between coding and ncRNAs and Random Forest-based prediction model for the classification of ncRNAs into different classes." ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "rnacon" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/rnacon/> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/rnacon/" .
+
 <https://bio.tools/rnaconslopt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0099,
@@ -411320,7 +434350,7 @@ An R package for the analysis of tiling array data that incorporates the correla
     sc:url "http://genome.ucf.edu/RNAConSLOpt/" .
 
 <https://bio.tools/rnacontact> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0097,
         edam:topic_0099,
@@ -411340,7 +434370,7 @@ RNAcontact is a new algorithm for RNA inter-nucleotide contacts prediction.""" ;
     sc:url "http://yanglab.nankai.edu.cn/RNAcontact/" .
 
 <https://bio.tools/rnacontext> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -411362,7 +434392,7 @@ RNAcontact is a new algorithm for RNA inter-nucleotide contacts prediction.""" ;
     biotools:primaryContact "Hilal Kazan" .
 
 <https://bio.tools/rnacop> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0099 ;
@@ -411378,7 +434408,7 @@ RNAcontact is a new algorithm for RNA inter-nucleotide contacts prediction.""" ;
     sc:url "http://rth.dk/resources/rnacop" .
 
 <https://bio.tools/rnadecay> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0204,
@@ -411399,7 +434429,7 @@ RNAcontact is a new algorithm for RNA inter-nucleotide contacts prediction.""" ;
     biotools:primaryContact "Reed Sorenson" .
 
 <https://bio.tools/rnadetector> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_0769,
@@ -411425,7 +434455,7 @@ RNAcontact is a new algorithm for RNA inter-nucleotide contacts prediction.""" ;
     sc:url "https://rnadetector.atlas.dmi.unict.it/index.html" .
 
 <https://bio.tools/rnaeapath> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0099,
@@ -411439,7 +434469,7 @@ RNAcontact is a new algorithm for RNA inter-nucleotide contacts prediction.""" ;
     sc:url "http://genome.ucf.edu/RNAEAPath/" .
 
 <https://bio.tools/rnaeditingatlas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_3308 ;
     sc:description "An Atlas of RNA editing events in human tissues." ;
@@ -411455,7 +434485,7 @@ RNAcontact is a new algorithm for RNA inter-nucleotide contacts prediction.""" ;
     biotools:primaryContact "Ernesto Picardi" .
 
 <https://bio.tools/rnaeditingindexer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0821,
         edam:topic_2885,
@@ -411471,7 +434501,7 @@ RNAcontact is a new algorithm for RNA inter-nucleotide contacts prediction.""" ;
     sc:url "https://github.com/a2iEditing/RNAEditingIndexer" .
 
 <https://bio.tools/rnaentropy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0099,
@@ -411485,7 +434515,7 @@ RNAcontact is a new algorithm for RNA inter-nucleotide contacts prediction.""" ;
     sc:url "https://github.com/clotelab/RNAentropy/" .
 
 <https://bio.tools/rnaex> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0097,
@@ -411501,7 +434531,7 @@ RNAcontact is a new algorithm for RNA inter-nucleotide contacts prediction.""" ;
     sc:url "http://lulab.life.tsinghua.edu.cn/RNAex/" .
 
 <https://bio.tools/rnaexpnumnbors> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0097,
@@ -411515,7 +434545,7 @@ RNAcontact is a new algorithm for RNA inter-nucleotide contacts prediction.""" ;
     sc:url "http://bioinformatics.bc.edu/clotelab/RNAexpNumNbors/index.spy" .
 
 <https://bio.tools/rnafdl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0097,
@@ -411530,7 +434560,7 @@ RNAcontact is a new algorithm for RNA inter-nucleotide contacts prediction.""" ;
     sc:url "http://sourceforge.net/projects/rnafdl/" .
 
 <https://bio.tools/rnag> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0099,
@@ -411547,7 +434577,7 @@ RNAcontact is a new algorithm for RNA inter-nucleotide contacts prediction.""" ;
     sc:url "http://ccmbweb.ccv.brown.edu/rnag.html" .
 
 <https://bio.tools/rnagraphdist> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0097,
@@ -411564,34 +434594,29 @@ RNAcontact is a new algorithm for RNA inter-nucleotide contacts prediction.""" ;
 
 <https://bio.tools/rnahybrid> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2975" ;
-            sc:name "Nucleic acid sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_2975" ],
+            sc:additionalType "http://edamontology.org/data_2975" ;
+            sc:encodingFormat "http://edamontology.org/format_1210" ;
+            sc:name "Nucleic acid sequence (raw)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2975" ;
-            sc:name "Nucleic acid sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_2975" ] ;
+            sc:additionalType "http://edamontology.org/data_2975" ;
+            sc:encodingFormat "http://edamontology.org/format_1210" ;
+            sc:name "Nucleic acid sequence (raw)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1584" ;
-            sc:name "Nucleic acid enthalpy" ;
-            sc:sameAs "http://edamontology.org/data_1584" ],
+            sc:additionalType "http://edamontology.org/data_1584" ;
+            sc:name "Nucleic acid enthalpy" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1584" ;
-            sc:name "Nucleic acid enthalpy" ;
-            sc:sameAs "http://edamontology.org/data_1584" ],
+            sc:additionalType "http://edamontology.org/data_0880" ;
+            sc:name "RNA secondary structure" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0880" ;
-            sc:name "RNA secondary structure" ;
-            sc:sameAs "http://edamontology.org/data_0880" ],
+            sc:additionalType "http://edamontology.org/data_1276" ;
+            sc:name "Nucleic acid features" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1276" ;
-            sc:name "Nucleic acid features" ;
-            sc:sameAs "http://edamontology.org/data_1276" ],
+            sc:additionalType "http://edamontology.org/data_1584" ;
+            sc:name "Nucleic acid enthalpy" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3128" ;
-            sc:name "Nucleic acid structure report" ;
-            sc:sameAs "http://edamontology.org/data_3128" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3128" ;
+            sc:name "Nucleic acid structure report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web API",
         "Web application" ;
@@ -411616,7 +434641,7 @@ RNAcontact is a new algorithm for RNA inter-nucleotide contacts prediction.""" ;
     sc:url "http://bibiserv.cebitec.uni-bielefeld.de/rnahybrid" .
 
 <https://bio.tools/rnaifold> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0097,
@@ -411635,8 +434660,21 @@ RNAcontact is a new algorithm for RNA inter-nucleotide contacts prediction.""" ;
     sc:url "http://bioinformatics.bc.edu/clotelab/RNAiFold" ;
     biotools:primaryContact "Clote Structural Biology Lab" .
 
+<https://bio.tools/rnaint> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:description "RNAint is a web-server for the prediction of RNA interacting mono-residues (RIMRs), di-residues (RIDRs), tri-residues (RITRs), tetra-residues (RITTRs) and penta-residues (RIPRs) from protein sequences." ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "rnaint" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/rnaint/> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/rnaint/" .
+
 <https://bio.tools/rnainter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0099,
         edam:topic_0602,
@@ -411658,14 +434696,14 @@ RNAInter: RNA Interactome Database.""" ;
 
 <https://bio.tools/rnainteract> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1276" ;
-            sc:name "Nucleic acid features" ;
-            sc:sameAs "http://edamontology.org/data_1276" ] ;
+            sc:additionalType "http://edamontology.org/data_1276" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Nucleic acid features" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0091 ;
@@ -411685,14 +434723,14 @@ RNAInter: RNA Interactome Database.""" ;
 
 <https://bio.tools/rnaither> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3495" ;
-            sc:name "RNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3495" ] ;
+            sc:additionalType "http://edamontology.org/data_3495" ;
+            sc:encodingFormat "http://edamontology.org/format_2078" ;
+            sc:name "RNA sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3604" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3316 ;
@@ -411712,10 +434750,10 @@ RNAInter: RNA Interactome Database.""" ;
 
 <https://bio.tools/rnalien> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3495" ;
-            sc:name "RNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3495" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3495" ;
+            sc:encodingFormat "http://edamontology.org/format_2546" ;
+            sc:name "RNA sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099 ;
     sc:author <http://orcid.org/0000-0001-9564-7525> ;
@@ -411736,7 +434774,7 @@ RNAInter: RNA Interactome Database.""" ;
     biotools:primaryContact <http://orcid.org/0000-0001-9564-7525> .
 
 <https://bio.tools/rnalign2d> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0097,
         edam:topic_0099,
@@ -411755,7 +434793,7 @@ RNAlign2D is a Python wrapper allowing one to align multiple RNA molecules using
     sc:url "https://github.com/tomaszwozniakihg/rnalign2d" .
 
 <https://bio.tools/rnall> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0097,
@@ -411770,7 +434808,7 @@ RNAlign2D is a Python wrapper allowing one to align multiple RNA molecules using
     sc:url "http://sysbio.cvm.msstate.edu/Rnall/" .
 
 <https://bio.tools/rnalocate> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0659,
@@ -411798,7 +434836,7 @@ RNAlign2D is a Python wrapper allowing one to align multiple RNA molecules using
     sc:url "http://www.rnalocate.org/" .
 
 <https://bio.tools/rnalogo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0097,
@@ -411819,8 +434857,39 @@ RNAlign2D is a Python wrapper allowing one to align multiple RNA molecules using
     sc:url "http://rnalogo.mbc.nctu.edu.tw/" ;
     biotools:primaryContact "Tzu-Hao Chang" .
 
+<https://bio.tools/rnaloops> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1465" ;
+            sc:name "RNA structure" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1127" ;
+            sc:name "PDB ID" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_3495" ;
+            sc:name "RNA sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0082,
+        edam:topic_0097,
+        edam:topic_0099,
+        edam:topic_0166,
+        edam:topic_3314 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC484>,
+        "pubmed:35809063" ;
+    sc:description "A database of RNA multiloops." ;
+    sc:featureList edam:operation_0570,
+        edam:operation_2441,
+        edam:operation_3431,
+        edam:operation_4009 ;
+    sc:isAccessibleForFree true ;
+    sc:name "RNAloops" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://rnaloops.cs.put.poznan.pl" .
+
 <https://bio.tools/rnaloss> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0097,
@@ -411842,7 +434911,7 @@ RNAlign2D is a Python wrapper allowing one to align multiple RNA molecules using
     biotools:primaryContact "Peter Clote" .
 
 <https://bio.tools/rnamdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0097,
@@ -411863,7 +434932,7 @@ RNAlign2D is a Python wrapper allowing one to align multiple RNA molecules using
     biotools:primaryContact "Contact Form" .
 
 <https://bio.tools/rnamining> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0659,
         edam:topic_3293,
@@ -411882,14 +434951,14 @@ RNAmining is a web tool that allows coding potential prediction.""" ;
 
 <https://bio.tools/rnammer> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:encodingFormat "http://edamontology.org/format_2305" ;
+            sc:name "Protein features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application",
         "Web service" ;
@@ -411908,7 +434977,7 @@ RNAmining is a web tool that allows coding potential prediction.""" ;
     biotools:primaryContact "Hans-Henrik Staerfeldt" .
 
 <https://bio.tools/rnamotifcontrast> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0097,
@@ -411930,7 +434999,7 @@ RNAmining is a web tool that allows coding potential prediction.""" ;
     biotools:primaryContact <https://orcid.org/0000-0002-4051-5549> .
 
 <https://bio.tools/rnamotifscan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0099,
@@ -411945,7 +435014,7 @@ RNAmining is a web tool that allows coding potential prediction.""" ;
     sc:url "http://genome.ucf.edu/RNAMotifScan/" .
 
 <https://bio.tools/rnamotifscanx> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0099,
@@ -411959,7 +435028,7 @@ RNAmining is a web tool that allows coding potential prediction.""" ;
     sc:url "http://genome.ucf.edu/RNAMotifScanX/" .
 
 <https://bio.tools/rnamountalign> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0097,
         edam:topic_0099,
@@ -411982,7 +435051,7 @@ RNAmountAlign is a novel algorithm for RNA sequence structure pairwise alignment
     sc:url "http://bioinformatics.bc.edu/clotelab/RNAmountAlign/" .
 
 <https://bio.tools/rnamst> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0097,
@@ -412000,7 +435069,7 @@ RNAmountAlign is a novel algorithm for RNA sequence structure pairwise alignment
     sc:url "http://bioinfo.csie.ncu.edu.tw/~rnamst/" .
 
 <https://bio.tools/rnamutants> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0097,
@@ -412023,7 +435092,7 @@ RNAmountAlign is a novel algorithm for RNA sequence structure pairwise alignment
         "Peter Clote (questions about the web server)" .
 
 <https://bio.tools/rnamute> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0097,
@@ -412043,7 +435112,7 @@ RNAmountAlign is a novel algorithm for RNA sequence structure pairwise alignment
     biotools:primaryContact "D. Barash" .
 
 <https://bio.tools/rnanet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0097,
         edam:topic_0099,
@@ -412061,10 +435130,10 @@ A major part of any data-science work consists in finding appropriate data which
 
 <https://bio.tools/rnanetmotif> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3495" ;
-            sc:name "RNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3495" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3495" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "RNA sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0099,
@@ -412086,7 +435155,7 @@ A major part of any data-science work consists in finding appropriate data which
     sc:url "http://rnanetmotif.ccbr.utoronto.ca" .
 
 <https://bio.tools/rnanr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0099,
@@ -412102,7 +435171,7 @@ A major part of any data-science work consists in finding appropriate data which
     biotools:primaryContact "Yann Ponty" .
 
 <https://bio.tools/rnanue> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0659,
@@ -412123,7 +435192,7 @@ A major part of any data-science work consists in finding appropriate data which
     biotools:primaryContact "Björn Voß" .
 
 <https://bio.tools/rnapagenumber> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0099,
@@ -412139,7 +435208,7 @@ A major part of any data-science work consists in finding appropriate data which
     sc:url "http://bioinformatics.bc.edu/clotelab/RNApagenumber/index.spy" .
 
 <https://bio.tools/rnaparametric> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0097,
@@ -412155,7 +435224,7 @@ A major part of any data-science work consists in finding appropriate data which
     sc:url "http://bioinformatics.bc.edu/clotelab/RNAparametric/index.spy" .
 
 <https://bio.tools/rnapasta> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0099,
@@ -412171,7 +435240,7 @@ A major part of any data-science work consists in finding appropriate data which
     sc:url "http://rna-informatics.uga.edu/malmberg/rlmlab/index.php?s=1&n=5&r=0" .
 
 <https://bio.tools/rnapathfinder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0097,
@@ -412188,7 +435257,7 @@ A major part of any data-science work consists in finding appropriate data which
     sc:url "http://bioinformatics.bc.edu/clotelab/RNApathfinder/" .
 
 <https://bio.tools/rnapdbee> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0097,
@@ -412210,8 +435279,48 @@ A major part of any data-science work consists in finding appropriate data which
     sc:url "http://rnapdbee.cs.put.poznan.pl/" ;
     biotools:primaryContact "Contact form" .
 
+<https://bio.tools/rnaphasep> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_3495" ;
+            sc:name "RNA sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0099,
+        edam:topic_0749,
+        edam:topic_2229,
+        edam:topic_3068,
+        edam:topic_3308 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAB985>,
+        "pmcid:PMC8728120",
+        "pubmed:34718740" ;
+    sc:description "RNAPhaSep is a novel database that collects phase separation related RNAs manually curated from publication and public databases. Various properties of RNAs together with the corresponding phase separation conditions validated by experiments were collected and deposited into this database." ;
+    sc:featureList edam:operation_3216,
+        edam:operation_3431,
+        edam:operation_3454,
+        edam:operation_3901 ;
+    sc:isAccessibleForFree true ;
+    sc:name "RNAPhaSep" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://www.rnaphasep.cn" .
+
+<https://bio.tools/rnapin> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:description "RNApin is a Support Vector Machines (SVMs) based web-server for the prediction of Protein Interacting Nucleotides (PINs) in RNA sequences." ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "rnapin" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/rnapin/> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/rnapin/" .
+
 <https://bio.tools/rnaplex> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0602 ;
@@ -412227,7 +435336,7 @@ A major part of any data-science work consists in finding appropriate data which
     sc:url "http://www.bioinf.uni-leipzig.de/Software/RNAplex/" .
 
 <https://bio.tools/rnaposers> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0593,
         edam:topic_2275,
@@ -412246,7 +435355,7 @@ This repo contains source code for RNAPosers' pose fingerprint and prediction (c
     sc:url "https://github.com/atfrank/RNAPosers" .
 
 <https://bio.tools/rnapred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0123,
@@ -412261,10 +435370,10 @@ This repo contains source code for RNAPosers' pose fingerprint and prediction (c
         "Mac",
         "Windows" ;
     sc:softwareHelp <http://crdd.osdd.net/raghava//rnapred/help.html> ;
-    sc:url "http://www.imtech.res.in/raghava/rnapred/" .
+    sc:url "http://webs.iiitd.edu.in/raghava/rnapred/" .
 
 <https://bio.tools/rnapredator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0154 ;
@@ -412280,7 +435389,7 @@ This repo contains source code for RNAPosers' pose fingerprint and prediction (c
     biotools:primaryContact "RNApredator Support" .
 
 <https://bio.tools/rnaprobe> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0097,
         edam:topic_0099,
@@ -412302,7 +435411,7 @@ Secondary structure prediction based on chemical probing.""" ;
     sc:url "https://rnaprobe.genesilico.pl" .
 
 <https://bio.tools/rnaprobr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0099,
@@ -412322,7 +435431,7 @@ Secondary structure prediction based on chemical probing.""" ;
     biotools:primaryContact <http://orcid.org/0000-0002-1854-1193> .
 
 <https://bio.tools/rnaprofile> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0097 ;
     sc:citation <https://doi.org/10.1093/nar/gkh650> ;
@@ -412339,7 +435448,7 @@ Secondary structure prediction based on chemical probing.""" ;
     biotools:primaryContact "Giulio Pavesi" .
 
 <https://bio.tools/rnaprot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0128,
@@ -412355,7 +435464,7 @@ Secondary structure prediction based on chemical probing.""" ;
     sc:url "https://github.com/BackofenLab/RNAProt" .
 
 <https://bio.tools/rnarchitecture> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -412381,7 +435490,7 @@ NAR Database Summary Paper Category List.""" ;
     sc:url "https://academic.oup.com/nar" .
 
 <https://bio.tools/rnarobo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0099,
@@ -412395,7 +435504,7 @@ NAR Database Summary Paper Category List.""" ;
     sc:url "http://compbio.fmph.uniba.sk/rnarobo/" .
 
 <https://bio.tools/rnasc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0099 ;
@@ -412410,7 +435519,7 @@ NAR Database Summary Paper Category List.""" ;
     sc:url "http://bioinformatics.bc.edu/clotelab/RNAsc/index.spy" .
 
 <https://bio.tools/rnascclust> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0099,
@@ -412429,7 +435538,7 @@ NAR Database Summary Paper Category List.""" ;
         "Rolf Backofen" .
 
 <https://bio.tools/rnascf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0097,
@@ -412443,7 +435552,7 @@ NAR Database Summary Paper Category List.""" ;
     sc:url "http://genome.ucf.edu/RNAscf/" .
 
 <https://bio.tools/rnaseqbrowser> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0099 ;
     sc:citation <https://doi.org/10.1186/s12864-015-1346-2>,
@@ -412461,7 +435570,7 @@ NAR Database Summary Paper Category List.""" ;
     sc:url "http://www.australianprostatecentre.org/research/software/rnaseqbrowser" .
 
 <https://bio.tools/rnaseqcomp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3170 ;
@@ -412481,7 +435590,7 @@ NAR Database Summary Paper Category List.""" ;
     biotools:primaryContact "Mingxiang Teng" .
 
 <https://bio.tools/rnaseqdesign> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_3170,
@@ -412500,7 +435609,7 @@ NAR Database Summary Paper Category List.""" ;
     biotools:primaryContact "George C. Tseng" .
 
 <https://bio.tools/rnaseqeval> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_3170,
@@ -412516,7 +435625,7 @@ NAR Database Summary Paper Category List.""" ;
     biotools:primaryContact "Mile Šikić" .
 
 <https://bio.tools/rnaseqgui> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Library" ;
     sc:applicationSubCategory edam:topic_0099,
@@ -412534,14 +435643,14 @@ NAR Database Summary Paper Category List.""" ;
 
 <https://bio.tools/rnaseqmap> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1383" ;
-            sc:name "Sequence alignment (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1383" ] ;
+            sc:additionalType "http://edamontology.org/data_1383" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Sequence alignment (nucleic acid)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1921" ;
+            sc:name "Sequence alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -412560,7 +435669,7 @@ NAR Database Summary Paper Category List.""" ;
     biotools:primaryContact "Michal Okoniewski" .
 
 <https://bio.tools/rnaseqmut> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0199,
@@ -412577,7 +435686,7 @@ NAR Database Summary Paper Category List.""" ;
     sc:url "http://allaboutbioinfo.blogspot.ca/2013/09/detecting-mutations-from-rna-seq.html" .
 
 <https://bio.tools/rnaseqpower> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3170 ;
@@ -412595,7 +435704,7 @@ NAR Database Summary Paper Category List.""" ;
     biotools:primaryContact "Terry M Therneau" .
 
 <https://bio.tools/rnaseqpowercalculator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_3168,
@@ -412610,7 +435719,7 @@ NAR Database Summary Paper Category List.""" ;
     sc:url "http://www2.hawaii.edu/~lgarmire/RNASeqPowerCalculator.htm" .
 
 <https://bio.tools/rnaseqr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0769,
@@ -412635,7 +435744,7 @@ This R package is designed for case-control RNA-Seq analysis (two-group). There
     biotools:primaryContact "Leroy E. Hood" .
 
 <https://bio.tools/rnaseqsamplesize> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -412656,7 +435765,7 @@ This R package is designed for case-control RNA-Seq analysis (two-group). There
     biotools:primaryContact "Shilin Zhao" .
 
 <https://bio.tools/rnashapes> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0099 ;
@@ -412671,7 +435780,7 @@ This R package is designed for case-control RNA-Seq analysis (two-group). There
     sc:url "http://bibiserv2.cebitec.uni-bielefeld.de/rnashapes" .
 
 <https://bio.tools/rnasite> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0099,
@@ -412692,7 +435801,7 @@ RNAsite is a novel method to predict small molecule-RNA binding sites. We first
     sc:url "http://yanglab.nankai.edu.cn/RNAsite" .
 
 <https://bio.tools/rnasnap2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0203,
         edam:topic_0659,
@@ -412712,7 +435821,7 @@ RNA solvent accessibility, similar to protein solvent accessibility, reflects th
     sc:url "https://sparks-lab.org/server/rnasnap2" .
 
 <https://bio.tools/rnasnoop> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0099,
@@ -412728,7 +435837,7 @@ RNA solvent accessibility, similar to protein solvent accessibility, reflects th
     sc:url "http://www.bioinf.uni-leipzig.de/~htafer/RNAsnoop/RNAsnoop.html" .
 
 <https://bio.tools/rnasnp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0099,
@@ -412746,7 +435855,7 @@ RNA solvent accessibility, similar to protein solvent accessibility, reflects th
         "Tafer H" .
 
 <https://bio.tools/rnasoft> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0097,
@@ -412769,8 +435878,29 @@ RNA solvent accessibility, similar to protein solvent accessibility, reflects th
     sc:url "http://www.rnasoft.ca/" ;
     biotools:primaryContact "Anne Condon" .
 
+<https://bio.tools/rnasolo> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0082,
+        edam:topic_0097,
+        edam:topic_0099,
+        edam:topic_0611 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC386>,
+        "pmcid:PMC9272803",
+        "pubmed:35674373" ;
+    sc:description "A repository of cleaned PDB-derived RNA 3D structures." ;
+    sc:featureList edam:operation_0502,
+        edam:operation_0570,
+        edam:operation_2441 ;
+    sc:isAccessibleForFree true ;
+    sc:name "RNAsolo" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://rnasolo.cs.put.poznan.pl" .
+
 <https://bio.tools/rnasoup> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0099 ;
@@ -412784,7 +435914,7 @@ RNA solvent accessibility, similar to protein solvent accessibility, reflects th
     sc:url "http://www.bioinf.uni-leipzig.de/~kristin/Software/RNAsoup/?p=index.html" .
 
 <https://bio.tools/rnaspace> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0219,
@@ -412801,30 +435931,30 @@ RNA solvent accessibility, similar to protein solvent accessibility, reflects th
 
 <https://bio.tools/rnaspades> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3168,
         edam:topic_3170,
@@ -412844,8 +435974,35 @@ RNA solvent accessibility, similar to protein solvent accessibility, reflects th
     sc:url "http://cab.spbu.ru/software/spades/" ;
     biotools:primaryContact "Galaxy Support Team" .
 
+<https://bio.tools/rnaspider> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1465" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "RNA structure" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0082,
+        edam:topic_0097,
+        edam:topic_0099,
+        edam:topic_0154,
+        edam:topic_0593 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAC218>,
+        "pubmed:35349710" ;
+    sc:description "A webserver to analyze entanglements in RNA 3D structures." ;
+    sc:featureList edam:operation_0278,
+        edam:operation_0295,
+        edam:operation_0570,
+        edam:operation_2441,
+        edam:operation_4009 ;
+    sc:isAccessibleForFree true ;
+    sc:name "RNAspider" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://rnaspider.cs.put.poznan.pl/" .
+
 <https://bio.tools/rnassess> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0659,
@@ -412865,7 +436022,7 @@ RNA solvent accessibility, similar to protein solvent accessibility, reflects th
     biotools:primaryContact "Contact form" .
 
 <https://bio.tools/rnassist> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0769,
@@ -412889,14 +436046,14 @@ RNA solvent accessibility, similar to protein solvent accessibility, reflects th
 
 <https://bio.tools/rnastrand> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1383" ;
-            sc:name "Sequence alignment (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1383" ] ;
+            sc:additionalType "http://edamontology.org/data_1383" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Sequence alignment (nucleic acid)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0880" ;
-            sc:name "RNA secondary structure" ;
-            sc:sameAs "http://edamontology.org/data_0880" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0880" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "RNA secondary structure" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0082 ;
     sc:citation <https://doi.org/10.1186/1748-7188-2-6> ;
@@ -412911,7 +436068,7 @@ RNA solvent accessibility, similar to protein solvent accessibility, reflects th
     sc:url "http://www.bioinf.uni-leipzig.de/Software/RNAstrand/" .
 
 <https://bio.tools/rnastructure> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
@@ -412930,7 +436087,7 @@ RNA solvent accessibility, similar to protein solvent accessibility, reflects th
     biotools:primaryContact "David Mathews" .
 
 <https://bio.tools/rnathermsw> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0659,
@@ -412948,7 +436105,7 @@ RNA solvent accessibility, similar to protein solvent accessibility, reflects th
     biotools:primaryContact "Support" .
 
 <https://bio.tools/rnathor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0097,
         edam:topic_0099,
@@ -412969,7 +436126,7 @@ RNAthor is a tool for the fully automated normalization and analysis of SHAPE/DM
     sc:url "http://rnathor.cs.put.poznan.pl/" .
 
 <https://bio.tools/rnatips> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0097,
@@ -412994,14 +436151,13 @@ RNAthor is a tool for the fully automated normalization and analysis of SHAPE/DM
 
 <https://bio.tools/rnavirusdb> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2784" ;
-            sc:name "RNAVirusDB ID" ;
-            sc:sameAs "http://edamontology.org/data_2784" ] ;
+            sc:additionalType "http://edamontology.org/data_2784" ;
+            sc:name "RNAVirusDB ID" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2530" ;
-            sc:name "Organism report" ;
-            sc:sameAs "http://edamontology.org/data_2530" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2530" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Organism report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0781 ;
     sc:citation <https://doi.org/10.1093/nar/gkn729>,
@@ -413017,7 +436173,7 @@ RNAthor is a tool for the fully automated normalization and analysis of SHAPE/DM
     biotools:primaryContact "Tulio de Oliveira" .
 
 <https://bio.tools/rnawolf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0099 ;
@@ -413032,7 +436188,7 @@ RNAthor is a tool for the fully automated normalization and analysis of SHAPE/DM
     sc:url "http://www.tbi.univie.ac.at/software/rnawolf/index.html" .
 
 <https://bio.tools/rnawre> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_2229,
         edam:topic_3068,
@@ -413050,7 +436206,7 @@ RNA modifications are involved in various kinds of cellular biological processes
     sc:url "http://rnawre.bio2db.com" .
 
 <https://bio.tools/rnaxplorer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0099,
         edam:topic_0736,
@@ -413067,7 +436223,7 @@ RNAxplorer is a multitool, that offers different methods to explore RNA energy l
     sc:url "https://github.com/ViennaRNA/RNAxplorer/" .
 
 <https://bio.tools/rnaz> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0097,
@@ -413093,14 +436249,14 @@ RNAxplorer is a multitool, that offers different methods to explore RNA energy l
 
 <https://bio.tools/rnbeads> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2012" ;
-            sc:name "Sequence coordinates" ;
-            sc:sameAs "http://edamontology.org/data_2012" ] ;
+            sc:additionalType "http://edamontology.org/data_2012" ;
+            sc:encodingFormat "http://edamontology.org/format_3578" ;
+            sc:name "Sequence coordinates" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3173 ;
     sc:citation "pubmed:25262207" ;
@@ -413118,7 +436274,7 @@ RNAxplorer is a multitool, that offers different methods to explore RNA energy l
     sc:url "http://rnbeads.mpi-inf.mpg.de/" .
 
 <https://bio.tools/rnce> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0208,
         edam:topic_0602,
@@ -413135,10 +436291,9 @@ RNAxplorer is a multitool, that offers different methods to explore RNA energy l
 
 <https://bio.tools/rnentropy> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3112" ;
-            sc:name "Gene expression matrix" ;
-            sc:sameAs "http://edamontology.org/data_3112" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3112" ;
+            sc:name "Gene expression matrix" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203 ;
     sc:author "Giulio Pavesi" ;
@@ -413155,7 +436310,7 @@ RNAxplorer is a multitool, that offers different methods to explore RNA energy l
     biotools:primaryContact "Federico Zambelli" .
 
 <https://bio.tools/rnf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0654,
@@ -413169,7 +436324,7 @@ RNAxplorer is a multitool, that offers different methods to explore RNA energy l
     sc:url "http://karel-brinda.github.io/rnftools/" .
 
 <https://bio.tools/rnits> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203 ;
@@ -413187,8 +436342,26 @@ RNAxplorer is a multitool, that offers different methods to explore RNA energy l
     sc:url "http://bioconductor.org/packages/release/bioc/html/Rnits.html" ;
     biotools:primaryContact "Dipen P. Sangurdekar" .
 
+<https://bio.tools/rnmf> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_0199,
+        edam:topic_0654,
+        edam:topic_2640 ;
+    sc:citation <https://doi.org/10.1002/CAM4.4717>,
+        "pubmed:35575002" ;
+    sc:description "A practical framework RNMF for exploring the association between mutational signatures and genes using gene cumulative contribution abundance." ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "RNMF" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/zhenzhang-li/RNMF" .
+
 <https://bio.tools/rnmr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -413204,7 +436377,7 @@ RNAxplorer is a multitool, that offers different methods to explore RNA energy l
     sc:url "http://rnmr.nmrfam.wisc.edu/" .
 
 <https://bio.tools/rnn-virseeker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3174,
         edam:topic_3837 ;
     sc:citation <https://doi.org/10.1109/TCBB.2020.3044575>,
@@ -413220,7 +436393,7 @@ To make a prediction, users' own query contigs should be edited into a ".csv" fi
     sc:url "https://github.com/crazyinter/RNN-VirSeeker" .
 
 <https://bio.tools/rnnimp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3474,
         edam:topic_3518 ;
@@ -413233,7 +436406,7 @@ To make a prediction, users' own query contigs should be edited into a ".csv" fi
     sc:url "https://github.com/kanamekojima/rnnimp/" .
 
 <https://bio.tools/rnnotator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3168,
@@ -413251,7 +436424,7 @@ To make a prediction, users' own query contigs should be edited into a ".csv" fi
         "Zhong Wang" .
 
 <https://bio.tools/rnsc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0128,
@@ -413272,7 +436445,7 @@ To make a prediction, users' own query contigs should be edited into a ".csv" fi
     biotools:primaryContact "Dr. Igor Jurisica" .
 
 <https://bio.tools/road> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3070,
@@ -413289,7 +436462,7 @@ To make a prediction, users' own query contigs should be edited into a ".csv" fi
     biotools:primaryContact "Yang Feng" .
 
 <https://bio.tools/roar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3170 ;
@@ -413307,7 +436480,7 @@ To make a prediction, users' own query contigs should be edited into a ".csv" fi
     biotools:primaryContact "Elena Grassi" .
 
 <https://bio.tools/roary> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0622,
@@ -413323,7 +436496,7 @@ To make a prediction, users' own query contigs should be edited into a ".csv" fi
     sc:url "http://sanger-pathogens.github.io/Roary/" .
 
 <https://bio.tools/rob-men> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3305,
         edam:topic_3377 ;
@@ -413335,7 +436508,7 @@ To make a prediction, users' own query contigs should be edited into a ".csv" fi
     biotools:primaryContact <https://orcid.org/0000-0002-6196-3308> .
 
 <https://bio.tools/robetta> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0128,
@@ -413358,7 +436531,7 @@ To make a prediction, users' own query contigs should be edited into a ".csv" fi
     biotools:primaryContact "David Baker" .
 
 <https://bio.tools/robina> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3518 ;
@@ -413375,7 +436548,7 @@ To make a prediction, users' own query contigs should be edited into a ".csv" fi
     biotools:primaryContact "M. Lohse" .
 
 <https://bio.tools/robmixreg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3303 ;
     sc:citation <https://doi.org/10.1101/2020.08.02.233460> ;
@@ -413390,7 +436563,7 @@ Finite mixture models are a popular technique for modelling unobserved heterogen
     sc:url "https://CRAN.R-project.org/package=RobMixReg" .
 
 <https://bio.tools/robocop> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3168,
@@ -413414,7 +436587,7 @@ Finite mixture models are a popular technique for modelling unobserved heterogen
     sc:url "https://github.com/HarteminkLab/RoboCOP" .
 
 <https://bio.tools/robocov> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
         edam:topic_0625,
@@ -413435,7 +436608,7 @@ Observe that Robocov correlation and partial correlation estimators are visually
     sc:url "https://github.com/kkdey/Robocov" .
 
 <https://bio.tools/robosample> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0176,
         edam:topic_3047,
         edam:topic_3315 ;
@@ -413447,25 +436620,8 @@ Observe that Robocov correlation and partial correlation estimators are visually
     sc:name "Robosample" ;
     sc:url "https://github.com/spirilaurentiu/Robosample" .
 
-<https://bio.tools/robot_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3315,
-        edam:topic_3372 ;
-    sc:citation <https://doi.org/10.20944/PREPRINTS201911.0194.V1> ;
-    sc:description """A Robot's Response Acceleration Using the Metric Dimension Problem.
-
-Consider a robot that is navigating in a space modeled by a graph, and that wants to know its current location. It can send a signal to determine how far it is from each landmark among a set of fixed landmarks. We study the problem of computing the minimum required number of landmarks, and where they should be placed so that the robot can always determine its location. Since the problem is an NP-complete problem, the robot's responses to the actions are slow. To accelerate this response, we can use the parallel version of this problem. In this work, we introduce a new parallel implementation for determining the metric dimension of a given graph.
-
-||| HOMEPAGE MISSING!.
-
-||| NAME (robot) SIMILAR TO (PUB. DIFFERENT) bio.tools/ROBOT (ROBOT).
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'metric', 'landmarks', 'SMP', 'NP-complete'""" ;
-    sc:featureList edam:operation_3432 ;
-    sc:name "robot_autogenerated" ;
-    sc:url "https://doi.org/10.20944/PREPRINTS201911.0194.V1" .
-
 <https://bio.tools/robpower> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3053,
         edam:topic_3569,
@@ -413480,8 +436636,26 @@ Consider a robot that is navigating in a space modeled by a graph, and that want
     sc:softwareHelp <https://qgsp.jouy.inra.fr/index.php?option=com_content&view=article&id=54&Itemid=59> ;
     sc:url "https://qgsp.jouy.inra.fr/index.php?option=com_content&view=article&id=54&Itemid=59" .
 
+<https://bio.tools/robust> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0128,
+        edam:topic_0634,
+        edam:topic_3344 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAB876>,
+        "pubmed:34984440" ;
+    sc:description "Robust disease module mining via enumeration of diverse prize-collecting Steiner trees." ;
+    sc:featureList edam:operation_0337 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "ROBUST" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/bionetslab/robust-eval" .
+
 <https://bio.tools/robustclone> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0625,
         edam:topic_2640 ;
@@ -413501,18 +436675,15 @@ Run the matlab script file, named "carryout_RPCA.m" to recover the genotype matr
 
 <https://bio.tools/robustrankaggregation> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2872" ;
-            sc:name "ID list" ;
-            sc:sameAs "http://edamontology.org/data_2872" ] ;
+            sc:additionalType "http://edamontology.org/data_2872" ;
+            sc:name "ID list" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1669" ;
-            sc:name "P-value" ;
-            sc:sameAs "http://edamontology.org/data_1669" ],
+            sc:additionalType "http://edamontology.org/data_2872" ;
+            sc:name "ID list" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2872" ;
-            sc:name "ID list" ;
-            sc:sameAs "http://edamontology.org/data_2872" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1669" ;
+            sc:name "P-value" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3366 ;
@@ -413530,7 +436701,7 @@ Run the matlab script file, named "carryout_RPCA.m" to recover the genotype matr
     biotools:primaryContact "Raivo Kolde" .
 
 <https://bio.tools/robvis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_3068 ;
     sc:citation <https://doi.org/10.1002/JRSM.1411>,
@@ -413548,7 +436719,7 @@ Helps users in quickly visualizing risk-of-bias assessments performed as part of
     sc:url "https://www.riskofbias.info/welcome/robvis-visualization-tool" .
 
 <https://bio.tools/roc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0622 ;
@@ -413566,7 +436737,7 @@ Helps users in quickly visualizing risk-of-bias assessments performed as part of
     biotools:primaryContact "Vince Carey" .
 
 <https://bio.tools/roc-auroc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3474 ;
@@ -413581,7 +436752,7 @@ Helps users in quickly visualizing risk-of-bias assessments performed as part of
     biotools:primaryContact "Cuneyt Mertayak" .
 
 <https://bio.tools/roc-curve> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3474 ;
     sc:description "MATLAB function which performs a ROC curve of two-class data." ;
@@ -413596,14 +436767,12 @@ Helps users in quickly visualizing risk-of-bias assessments performed as part of
 
 <https://bio.tools/roci> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0872" ;
-            sc:name "Phylogenetic tree" ;
-            sc:sameAs "http://edamontology.org/data_0872" ] ;
+            sc:additionalType "http://edamontology.org/data_0872" ;
+            sc:name "Phylogenetic tree" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2523" ;
-            sc:name "Phylogenetic data" ;
-            sc:sameAs "http://edamontology.org/data_2523" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2523" ;
+            sc:name "Phylogenetic data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0797 ;
@@ -413624,7 +436793,7 @@ Helps users in quickly visualizing risk-of-bias assessments performed as part of
     sc:url "https://bibiserv.cebitec.uni-bielefeld.de/roci" .
 
 <https://bio.tools/rocketship> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3444 ;
@@ -413642,8 +436811,33 @@ Helps users in quickly visualizing risk-of-bias assessments performed as part of
     sc:url "https://github.com/petmri/ROCKETSHIP" ;
     biotools:primaryContact <http://orcid.org/0000-0002-1065-8442> .
 
+<https://bio.tools/rocketx> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:name "Protein sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0082,
+        edam:topic_0130,
+        edam:topic_0736,
+        edam:topic_0749,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1101/2022.01.11.475831> ;
+    sc:description "De novo protein structure prediction by incremental inter-residue geometries prediction and model quality assessment using deep learning." ;
+    sc:featureList edam:operation_0272,
+        edam:operation_0303,
+        edam:operation_0476,
+        edam:operation_0477,
+        edam:operation_2415 ;
+    sc:isAccessibleForFree true ;
+    sc:name "RocketX" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://zhanglab-bioinf.com/RocketX" .
+
 <https://bio.tools/rocsampler> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0128 ;
     sc:citation <https://doi.org/10.1186/s12859-017-1920-5> ;
@@ -413654,8 +436848,30 @@ Helps users in quickly visualizing risk-of-bias assessments performed as part of
     sc:url "http://imi.kyushu-u.ac.jp/~om/software/RocSampler/" ;
     biotools:primaryContact "Osamu Maruyama" .
 
+<https://bio.tools/rodan> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0099,
+        edam:topic_0654,
+        edam:topic_3170,
+        edam:topic_3365,
+        edam:topic_3673 ;
+    sc:citation <https://doi.org/10.1186/S12859-022-04686-Y>,
+        "pmcid:PMC9020074",
+        "pubmed:35443610" ;
+    sc:description "A fully convolutional architecture for basecalling nanopore RNA sequencing data." ;
+    sc:featureList edam:operation_3185,
+        edam:operation_3198 ;
+    sc:license "MIT" ;
+    sc:name "RODAN" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://zenodo.org/record/4556951#.Yt5UkTFR1PY> ;
+    sc:url "https://github.com/biodlab/RODAN" .
+
 <https://bio.tools/roddy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Workbench" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -413674,7 +436890,7 @@ Helps users in quickly visualizing risk-of-bias assessments performed as part of
     biotools:primaryContact "German Cancer Research Center (DKFZ)" .
 
 <https://bio.tools/rodeo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0108,
@@ -413692,7 +436908,7 @@ Helps users in quickly visualizing risk-of-bias assessments performed as part of
     biotools:primaryContact "Prof. Douglas Mitchell" .
 
 <https://bio.tools/rodice> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
         edam:topic_0121,
@@ -413710,7 +436926,7 @@ devtools::install_github("ymatts/RoDiCE").""" ;
     sc:url "https://github.com/ymatts/RoDiCE" .
 
 <https://bio.tools/rodiomix> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3384,
         edam:topic_3452 ;
@@ -413725,7 +436941,7 @@ ROdiomiX is a MATLAB-based framework for the computation of radiomic features an
     sc:url "https://github.com/Ebadian-HFHS/ROdiomiX" .
 
 <https://bio.tools/rods> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3366 ;
     sc:citation <https://doi.org/10.1007/978-1-4419-1278-7_8>,
@@ -413735,7 +436951,7 @@ ROdiomiX is a MATLAB-based framework for the computation of radiomic features an
     sc:url "https://www.rods.pitt.edu/content/view/15/36/index.html" .
 
 <https://bio.tools/rohmm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Script" ;
     sc:applicationSubCategory edam:topic_0160,
@@ -413756,22 +436972,22 @@ ROdiomiX is a MATLAB-based framework for the computation of radiomic features an
 
 <https://bio.tools/roi_feature_projection> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2306" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0160 ;
@@ -413790,14 +437006,14 @@ ROdiomiX is a MATLAB-based framework for the computation of radiomic features an
 
 <https://bio.tools/roi_filter> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1093/nar/gkw343> ;
@@ -413814,14 +437030,14 @@ ROdiomiX is a MATLAB-based framework for the computation of radiomic features an
 
 <https://bio.tools/roi_metrics> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3071 ;
@@ -413841,14 +437057,14 @@ ROdiomiX is a MATLAB-based framework for the computation of radiomic features an
 
 <https://bio.tools/roi_pca> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0092 ;
     sc:citation <https://doi.org/10.1093/nar/gkw343>,
@@ -413867,14 +437083,14 @@ ROdiomiX is a MATLAB-based framework for the computation of radiomic features an
 
 <https://bio.tools/roi_plot_thumbnails> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_3071 ;
@@ -413893,14 +437109,14 @@ ROdiomiX is a MATLAB-based framework for the computation of radiomic features an
 
 <https://bio.tools/roi_report> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1093/nar/gkw343>,
@@ -413918,14 +437134,14 @@ ROdiomiX is a MATLAB-based framework for the computation of radiomic features an
 
 <https://bio.tools/roi_sort> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3071,
         edam:topic_3365 ;
@@ -413945,14 +437161,14 @@ ROdiomiX is a MATLAB-based framework for the computation of radiomic features an
 
 <https://bio.tools/roi_table> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_3071 ;
@@ -413971,7 +437187,7 @@ ROdiomiX is a MATLAB-based framework for the computation of radiomic features an
     biotools:primaryContact "Galaxy Support Team" .
 
 <https://bio.tools/rokai> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0160,
         edam:topic_0634,
@@ -413989,7 +437205,7 @@ RoKAI operates on a heterogeneous network having kinases and phosphosites as nod
     sc:url "http://rokai.io" .
 
 <https://bio.tools/roleswitch> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0099,
@@ -414010,7 +437226,7 @@ RoKAI operates on a heterogeneous network having kinases and phosphosites as nod
     biotools:primaryContact "Yue Li" .
 
 <https://bio.tools/rolexa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:citation "pubmed:18851737" ;
@@ -414026,14 +437242,14 @@ RoKAI operates on a heterogeneous network having kinases and phosphosites as nod
 
 <https://bio.tools/rols> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0966" ;
-            sc:name "Ontology term" ;
-            sc:sameAs "http://edamontology.org/data_0966" ] ;
+            sc:additionalType "http://edamontology.org/data_0966" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Ontology term" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2353" ;
-            sc:name "Ontology data" ;
-            sc:sameAs "http://edamontology.org/data_2353" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2353" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Ontology data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0089 ;
@@ -414051,7 +437267,7 @@ RoKAI operates on a heterogeneous network having kinases and phosphosites as nod
     biotools:primaryContact "Laurent Gatto" .
 
 <https://bio.tools/roma> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0085,
         edam:topic_0797,
@@ -414070,7 +437286,7 @@ RoKAI operates on a heterogeneous network having kinases and phosphosites as nod
     biotools:primaryContact "Klara Kaleb" .
 
 <https://bio.tools/romprev> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0634,
@@ -414087,7 +437303,7 @@ RoKAI operates on a heterogeneous network having kinases and phosphosites as nod
     sc:url "http://research.nhgri.nih.gov/ROMPrev/" .
 
 <https://bio.tools/ronn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_1317,
@@ -414108,7 +437324,7 @@ RoKAI operates on a heterogeneous network having kinases and phosphosites as nod
     sc:url "http://www.strubi.ox.ac.uk/RONN" .
 
 <https://bio.tools/rontotools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_1775 ;
@@ -414126,7 +437342,7 @@ RoKAI operates on a heterogeneous network having kinases and phosphosites as nod
     biotools:primaryContact "Calin Voichita" .
 
 <https://bio.tools/rootarray> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0780,
@@ -414143,7 +437359,7 @@ RoKAI operates on a heterogeneous network having kinases and phosphosites as nod
     sc:url "https://ohlerlab.mdc-berlin.de/software/Imaging_pipeline_106/" .
 
 <https://bio.tools/rootdigger> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_3524 ;
     sc:citation <https://doi.org/10.1101/2020.02.13.935304> ;
@@ -414155,8 +437371,28 @@ RoKAI operates on a heterogeneous network having kinases and phosphosites as nod
     sc:name "RootDigger" ;
     sc:url "https://github.com/computations/root_digger" .
 
+<https://bio.tools/rootpainter> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0625,
+        edam:topic_0780,
+        edam:topic_3383,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1111/NPH.18387>,
+        "pubmed:35851958" ;
+    sc:description "Deep Learning Segmentation of Biological Images with Corrective Annotation." ;
+    sc:featureList edam:operation_3443,
+        edam:operation_3553 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "RootPainter" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/Abe404/root_painter" .
+
 <https://bio.tools/rootstrap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0194,
@@ -414176,7 +437412,7 @@ RoKAI operates on a heterogeneous network having kinases and phosphosites as nod
     sc:url "https://github.com/suhanaser/Rootstrap" .
 
 <https://bio.tools/rop> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0659,
@@ -414193,7 +437429,7 @@ RoKAI operates on a heterogeneous network having kinases and phosphosites as nod
     biotools:primaryContact "Support" .
 
 <https://bio.tools/ropebwt2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654 ;
@@ -414206,7 +437442,7 @@ RoKAI operates on a heterogeneous network having kinases and phosphosites as nod
     sc:url "https://github.com/lh3/ropebwt2" .
 
 <https://bio.tools/ropls> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3391 ;
@@ -414226,8 +437462,27 @@ RoKAI operates on a heterogeneous network having kinases and phosphosites as nod
     sc:url "http://bioconductor.org/packages/release/bioc/html/ropls.html" ;
     biotools:primaryContact <http://orcid.org/0000-0003-1019-4577> .
 
+<https://bio.tools/ros-neuro> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Suite" ;
+    sc:applicationSubCategory edam:topic_0108,
+        edam:topic_0749,
+        edam:topic_3304 ;
+    sc:citation <https://doi.org/10.3389/FNBOT.2022.886050>,
+        "pmcid:PMC9127764",
+        "pubmed:35619967" ;
+    sc:description "An open-source framework for Brain-Machine Interface and robotics." ;
+    sc:featureList edam:operation_3435 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "ROS-Neuro" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/rosneuro" .
+
 <https://bio.tools/rosbreed> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0634,
         edam:topic_0780,
@@ -414248,7 +437503,7 @@ Cherry powdery mildew is a major problem in sweet cherry growing regions in the
     sc:url "http://www.rosbreed.org" .
 
 <https://bio.tools/rosenet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0176,
         edam:topic_2275,
         edam:topic_3306,
@@ -414264,7 +437519,7 @@ Cherry powdery mildew is a major problem in sweet cherry growing regions in the
     sc:url "https://github.com/DS3Lab/RosENet" .
 
 <https://bio.tools/roseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0625,
@@ -414284,7 +437539,7 @@ Cherry powdery mildew is a major problem in sweet cherry growing regions in the
     biotools:primaryContact "Debarka Sengupta" .
 
 <https://bio.tools/rosetta_flexpepdock> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0602,
@@ -414303,7 +437558,7 @@ Cherry powdery mildew is a major problem in sweet cherry growing regions in the
     biotools:primaryContact "Yuval Sedan" .
 
 <https://bio.tools/rosettaantibody> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0154,
@@ -414324,7 +437579,7 @@ Cherry powdery mildew is a major problem in sweet cherry growing regions in the
     biotools:primaryContact "Sergey Lyskov" .
 
 <https://bio.tools/rosettabackrub> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -414347,7 +437602,7 @@ Cherry powdery mildew is a major problem in sweet cherry growing regions in the
     biotools:primaryContact "Feedback Form" .
 
 <https://bio.tools/rosettadesign> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -414374,7 +437629,7 @@ Cherry powdery mildew is a major problem in sweet cherry growing regions in the
     biotools:primaryContact "Brian Kuhlman" .
 
 <https://bio.tools/rosettadock_server> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -414398,18 +437653,18 @@ Cherry powdery mildew is a major problem in sweet cherry growing regions in the
 
 <https://bio.tools/rosettaes> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1710" ;
-            sc:name "Structure image" ;
-            sc:sameAs "http://edamontology.org/data_1710" ],
+            sc:additionalType "http://edamontology.org/data_1710" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Structure image" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0889" ;
-            sc:name "Structural profile" ;
-            sc:sameAs "http://edamontology.org/data_0889" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0889" ;
+            sc:encodingFormat "http://edamontology.org/format_2032" ;
+            sc:name "Structural profile" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0611,
@@ -414429,7 +437684,7 @@ Cherry powdery mildew is a major problem in sweet cherry growing regions in the
     biotools:primaryContact "Frank Dimaio" .
 
 <https://bio.tools/rosettamhc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
         edam:topic_2830,
@@ -414446,7 +437701,7 @@ RosettaMHC models of SARS-CoV-2 peptide/HLA-A02 antigens.""" ;
     sc:url "https://rosettamhc.chemistry.ucsc.edu" .
 
 <https://bio.tools/rosettasurf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0130,
@@ -414470,7 +437725,7 @@ RosettaMHC models of SARS-CoV-2 peptide/HLA-A02 antigens.""" ;
     sc:url "https://github.com/LPDI-EPFL/RosettaSurf" .
 
 <https://bio.tools/rosettasx> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0203,
@@ -414493,7 +437748,7 @@ RosettaMHC models of SARS-CoV-2 peptide/HLA-A02 antigens.""" ;
     sc:url "http://www.rosettasx.com" .
 
 <https://bio.tools/rosettr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0780,
         edam:topic_3810 ;
@@ -414512,7 +437767,7 @@ RosettaMHC models of SARS-CoV-2 peptide/HLA-A02 antigens.""" ;
     biotools:primaryContact "Filipa Tomé" .
 
 <https://bio.tools/rosids> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0194,
         edam:topic_0196,
         edam:topic_3293 ;
@@ -414527,7 +437782,7 @@ RosettaMHC models of SARS-CoV-2 peptide/HLA-A02 antigens.""" ;
     sc:url "https://github.com/deisejpg/rosids" .
 
 <https://bio.tools/rossmann-toolbox> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Suite",
         "Web application" ;
@@ -414547,7 +437802,7 @@ RosettaMHC models of SARS-CoV-2 peptide/HLA-A02 antigens.""" ;
     biotools:primaryContact <https://orcid.org/0000-0002-4581-1558> .
 
 <https://bio.tools/rotational_profiler> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0176,
         edam:topic_0593,
         edam:topic_3318 ;
@@ -414568,8 +437823,21 @@ On the other hand, torsional potentials are evaluated over the full 360° of rot
     sc:name "Rotational Profiler" ;
     sc:url "http://rotprof.lncc.br" .
 
+<https://bio.tools/rotavpred> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:description "RotaVirusPred is a machine learning based tool to predict the zoonotic host tropism of Rotavirus A with the help of its genome sequences, stating whether a viral strain has the potential to infect human hosts." ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "rotavpred" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/rotavpred/> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/rotavpred/" .
+
 <https://bio.tools/rotl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0637,
         edam:topic_3050,
@@ -414600,14 +437868,14 @@ Then explore how you can use rotl with other packages to combine your data with
 
 <https://bio.tools/rots> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Gene expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ] ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Gene expression data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0950" ;
-            sc:name "Mathematical model" ;
-            sc:sameAs "http://edamontology.org/data_0950" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0950" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Mathematical model" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -414630,14 +437898,13 @@ Then explore how you can use rotl with other packages to combine your data with
 
 <https://bio.tools/rouge> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2393" ;
-            sc:name "mFLJ/mKIAA number" ;
-            sc:sameAs "http://edamontology.org/data_2393" ] ;
+            sc:additionalType "http://edamontology.org/data_2393" ;
+            sc:name "mFLJ/mKIAA number" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0916" ;
-            sc:name "Gene report" ;
-            sc:sameAs "http://edamontology.org/data_0916" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0916" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Gene report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0621 ;
@@ -414652,7 +437919,7 @@ Then explore how you can use rotl with other packages to combine your data with
     sc:url "http://www.kazusa.or.jp/rouge/" .
 
 <https://bio.tools/round-variance-sars-cov-2-gene-sequence-covid19> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3344,
         edam:topic_3500 ;
@@ -414667,7 +437934,7 @@ Then explore how you can use rotl with other packages to combine your data with
     biotools:primaryContact "steed huang" .
 
 <https://bio.tools/rowdiff> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_3170,
@@ -414690,18 +437957,18 @@ Then explore how you can use rotl with other packages to combine your data with
 
 <https://bio.tools/rp2paths> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ] ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Pathway or network" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2301" ;
-            sc:name "SMILES string" ;
-            sc:sameAs "http://edamontology.org/data_2301" ],
+            sc:additionalType "http://edamontology.org/data_2301" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "SMILES string" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Pathway or network" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:citation <https://doi.org/10.1016/j.ymben.2017.12.002> ;
     sc:description "Pathway enumeration from RetroPath2.0 retrosynthesis output" ;
     sc:featureList edam:operation_3929 ;
@@ -414711,7 +437978,7 @@ Then explore how you can use rotl with other packages to combine your data with
     sc:url "https://github.com/brsynth/rp2paths" .
 
 <https://bio.tools/rpa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203 ;
@@ -414729,8 +437996,26 @@ Then explore how you can use rotl with other packages to combine your data with
     sc:url "http://bioconductor.org/packages/release/bioc/html/RPA.html" ;
     biotools:primaryContact "Leo Lahti" .
 
+<https://bio.tools/rpadrino> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0610,
+        edam:topic_0780,
+        edam:topic_3299 ;
+    sc:citation <https://doi.org/10.1111/2041-210X.13910> ;
+    sc:description "Open access database of Integral Projection Models." ;
+    sc:featureList edam:operation_3946 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "Rpadrino" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://cran.r-project.org/web/packages/Rpadrino/Rpadrino.pdf> ;
+    sc:url "https://github.com/padrinoDB/Rpadrino" .
+
 <https://bio.tools/rpanglaodb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Library",
         "Workbench" ;
@@ -414751,7 +438036,7 @@ Then explore how you can use rotl with other packages to combine your data with
     biotools:primaryContact <https://orcid.org/0000-0003-4424-8422> .
 
 <https://bio.tools/rpasuite> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_3170,
@@ -414765,7 +438050,7 @@ Then explore how you can use rotl with other packages to combine your data with
     sc:url "http://rth.dk/resources/rpa/" .
 
 <https://bio.tools/rpath> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0602,
@@ -414786,7 +438071,7 @@ Then explore how you can use rotl with other packages to combine your data with
     sc:url "https://github.com/enveda/RPath" .
 
 <https://bio.tools/rpbs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Bioinformatics portal" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0128,
@@ -414806,7 +438091,7 @@ Then explore how you can use rotl with other packages to combine your data with
     sc:url "http://bioserv.rpbs.jussieu.fr/" .
 
 <https://bio.tools/rpf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0593,
@@ -414826,8 +438111,21 @@ Then explore how you can use rotl with other packages to combine your data with
     sc:url "http://nmr.cabm.rutgers.edu/rpf" ;
     biotools:primaryContact "RPF Support" .
 
+<https://bio.tools/rpfold> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:description "A fold recognition server for searching protein fold in PDB. It is based on sequence similarity search and secondary structure alignment technique." ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "rpfold" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/rpfold/> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/rpfold/" .
+
 <https://bio.tools/rpg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0632,
         edam:topic_3304,
         edam:topic_3382 ;
@@ -414847,14 +438145,12 @@ RPG is designed to run in response to 3.3 volt triggers from other hardware, or
 
 <https://bio.tools/rpg-protein> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1193" ;
-            sc:name "Tool name (FASTA)" ;
-            sc:sameAs "http://edamontology.org/data_1193" ] ;
+            sc:additionalType "http://edamontology.org/data_1193" ;
+            sc:name "Tool name (FASTA)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:name "Sequence alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -414876,7 +438172,7 @@ Rapid Peptides Generator (RPG) is a software dedicated to predict proteases-indu
     sc:url "https://gitlab.pasteur.fr/nmaillet/rpg" .
 
 <https://bio.tools/rpgd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0622,
@@ -414901,7 +438197,7 @@ Rapid Peptides Generator (RPG) is a software dedicated to predict proteases-indu
         "Jihua Wang" .
 
 <https://bio.tools/rpi-se> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0659,
         edam:topic_3474 ;
@@ -414918,7 +438214,7 @@ The interactions between non-coding RNAs and proteins play an essential role in
     sc:url "https://github.com/haichengyi/RPI-SE" .
 
 <https://bio.tools/rpicoo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0128,
@@ -414936,7 +438232,7 @@ The interactions between non-coding RNAs and proteins play an essential role in
     biotools:primaryContact "Zahiri J." .
 
 <https://bio.tools/rpinbase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_3474,
         edam:topic_3794 ;
@@ -414952,7 +438248,7 @@ Explore and create dataset.""" ;
     sc:url "http://rpinbase.com" .
 
 <https://bio.tools/rpiso> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0108,
@@ -414975,7 +438271,7 @@ Explore and create dataset.""" ;
     sc:url "http://cosbi6.ee.ncku.edu.tw/RPiso/" .
 
 <https://bio.tools/rpmcmc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3168,
@@ -414989,7 +438285,7 @@ Explore and create dataset.""" ;
     sc:url "http://daweb.ism.ac.jp/yoshidalab/motif/" .
 
 <https://bio.tools/rpmirdip> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0659,
         edam:topic_3308,
@@ -415009,7 +438305,7 @@ RPmirDIP Predictions of ~6 Million miRNA-Gene Pairs.""" ;
     sc:url "http://cu-bic.ca/RPmirDIP" .
 
 <https://bio.tools/rpocket> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
@@ -415035,7 +438331,7 @@ RPmirDIP Predictions of ~6 Million miRNA-Gene Pairs.""" ;
     sc:url "http://zhaoserver.com.cn/RPocket/RPocket.html" .
 
 <https://bio.tools/rpoly> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3053 ;
     sc:citation <https://doi.org/10.1007/978-3-540-68155-7_28>,
@@ -415048,8 +438344,29 @@ RPmirDIP Predictions of ~6 Million miRNA-Gene Pairs.""" ;
     sc:softwareVersion "1.2.1" ;
     sc:url "http://sat.inesc-id.pt/software/rpoly/" .
 
+<https://bio.tools/rpop> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_3379,
+        edam:topic_3384,
+        edam:topic_3444,
+        edam:topic_3452 ;
+    sc:citation <https://doi.org/10.1016/J.NEUROIMAGE.2021.118775>,
+        "pubmed:34890793" ;
+    sc:description "Robust PET-only processing of community acquired heterogeneous amyloid-PET data." ;
+    sc:featureList edam:operation_2428,
+        edam:operation_3435,
+        edam:operation_3799 ;
+    sc:isAccessibleForFree true ;
+    sc:license "CC-BY-NC-SA-4.0" ;
+    sc:name "rPOP" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/leoiacca/rPOP" .
+
 <https://bio.tools/rppapipe> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
@@ -415068,24 +438385,47 @@ RPmirDIP Predictions of ~6 Million miRNA-Gene Pairs.""" ;
     sc:url "http://www.ra.cs.uni-tuebingen.de/software/RPPApipe/" ;
     biotools:primaryContact "Johannes Eichner" .
 
+<https://bio.tools/rppocket> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0128,
+        edam:topic_0154,
+        edam:topic_0166,
+        edam:topic_2275,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.3390/IJMS23136903>,
+        "pmcid:PMC9266927",
+        "pubmed:35805909" ;
+    sc:description "An RNA-Protein Intuitive Database with RNA Pocket Topology Resources." ;
+    sc:featureList edam:operation_0245,
+        edam:operation_0267,
+        edam:operation_0278,
+        edam:operation_0570,
+        edam:operation_3902 ;
+    sc:isAccessibleForFree true ;
+    sc:name "RPpocket" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://zhaoserver.com.cn/RPpocket/RPpocket.html" .
+
 <https://bio.tools/rpredictor> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3495" ;
-            sc:name "RNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3495" ],
+            sc:additionalType "http://edamontology.org/data_3495" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "RNA sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2080" ;
-            sc:name "Database search results" ;
-            sc:sameAs "http://edamontology.org/data_2080" ] ;
+            sc:additionalType "http://edamontology.org/data_2080" ;
+            sc:name "Database search results" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0880" ;
-            sc:name "RNA secondary structure" ;
-            sc:sameAs "http://edamontology.org/data_0880" ],
+            sc:additionalType "http://edamontology.org/data_0880" ;
+            sc:encodingFormat "http://edamontology.org/format_3604" ;
+            sc:name "RNA secondary structure" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0880" ;
-            sc:name "RNA secondary structure" ;
-            sc:sameAs "http://edamontology.org/data_0880" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0880" ;
+            sc:encodingFormat "http://edamontology.org/format_3604" ;
+            sc:name "RNA secondary structure" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0099 ;
@@ -415123,7 +438463,7 @@ RPmirDIP Predictions of ~6 Million miRNA-Gene Pairs.""" ;
         "Josef Pánek" .
 
 <https://bio.tools/rprh> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
         edam:topic_0659,
@@ -415139,8 +438479,34 @@ RPRH is a database for predicted plant microRNA Functions in human. MicroRNAs ar
     sc:name "RPRH" ;
     sc:url "http://www.rnanut.net/rprh/" .
 
+<https://bio.tools/rprimer> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0625,
+        edam:topic_0632,
+        edam:topic_0769,
+        edam:topic_3168,
+        edam:topic_3519 ;
+    sc:citation <https://doi.org/10.1186/S12859-022-04781-0>,
+        "pmcid:PMC9206141",
+        "pubmed:35717145" ;
+    sc:description "rprimer is an R package that designs degenerate oligos and PCR assays from a multiple DNA sequence alignment of target sequences of interest. The package is specifically designed for sequence variable viruses." ;
+    sc:featureList edam:operation_0292,
+        edam:operation_0308,
+        edam:operation_0337,
+        edam:operation_0363,
+        edam:operation_3196 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "rprimer" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://bioconductor.org/packages/release/bioc/manuals/rprimer/man/rprimer.pdf> ;
+    sc:url "https://www.bioconductor.org/packages/rprimer" .
+
 <https://bio.tools/rproteomics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -415154,7 +438520,7 @@ RPRH is a database for predicted plant microRNA Functions in human. MicroRNAs ar
     sc:url "https://github.com/NCIP/cagrid-general/tree/master/demos/06annual/workflow/JRProteomicsGridSkeletonValue-1.0/src/org/globus/cagrid/RProteomics" .
 
 <https://bio.tools/rprotobuflib> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3316 ;
     sc:description "This package provides the headers and static library of Protocol buffers 2.6.0 for other R packages to compile and link against." ;
@@ -415170,7 +438536,7 @@ RPRH is a database for predicted plant microRNA Functions in human. MicroRNAs ar
     biotools:primaryContact "Mike Jiang" .
 
 <https://bio.tools/rps> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2269 ;
@@ -415186,29 +438552,52 @@ RPRH is a database for predicted plant microRNA Functions in human. MicroRNAs ar
 
 <https://bio.tools/rps999> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3736" ;
-            sc:name "Ecological data" ;
-            sc:sameAs "http://edamontology.org/data_3736" ],
+            sc:additionalType "http://edamontology.org/data_3707" ;
+            sc:name "Biodiversity data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3707" ;
-            sc:name "Biodiversity data" ;
-            sc:sameAs "http://edamontology.org/data_3707" ],
+            sc:additionalType "http://edamontology.org/data_1916" ;
+            sc:name "Alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1916" ;
-            sc:name "Alignment" ;
-            sc:sameAs "http://edamontology.org/data_1916" ] ;
+            sc:additionalType "http://edamontology.org/data_3736" ;
+            sc:encodingFormat "http://edamontology.org/format_3464" ;
+            sc:name "Ecological data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0914" ;
-            sc:name "Codon usage data" ;
-            sc:sameAs "http://edamontology.org/data_0914" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0914" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Codon usage data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "a database of llps rna" ;
     sc:featureList edam:operation_0292 ;
     sc:name "RPS" ;
     sc:url "https://bio.tools/register" .
 
+<https://bio.tools/rps_database> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0634,
+        edam:topic_0659,
+        edam:topic_2229,
+        edam:topic_3170,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAB986>,
+        "pmcid:PMC8728229",
+        "pubmed:34718734" ;
+    sc:description "A comprehensive database of RNAs involved in liquid-liquid phase separation." ;
+    sc:featureList edam:operation_0278,
+        edam:operation_2441,
+        edam:operation_3216,
+        edam:operation_3454,
+        edam:operation_3902 ;
+    sc:isAccessibleForFree true ;
+    sc:name "RPS" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://rps.renlab.org" .
+
 <https://bio.tools/rpsixml> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0092 ;
@@ -415226,7 +438615,7 @@ RPRH is a database for predicted plant microRNA Functions in human. MicroRNAs ar
     biotools:primaryContact "Jitao David Zhang" .
 
 <https://bio.tools/rptR> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3382 ;
     sc:citation <https://doi.org/10.3382/PS/PEZ410>,
         "pubmed:31581757" ;
@@ -415236,7 +438625,7 @@ RPRH is a database for predicted plant microRNA Functions in human. MicroRNAs ar
     sc:url "https://cran.r-project.org/web/packages/rptR/vignettes/rptR.html" .
 
 <https://bio.tools/rpx> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0121 ;
@@ -415254,7 +438643,7 @@ RPRH is a database for predicted plant microRNA Functions in human. MicroRNAs ar
     biotools:primaryContact "Laurent Gatto" .
 
 <https://bio.tools/rqc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3168,
@@ -415273,7 +438662,7 @@ RPRH is a database for predicted plant microRNA Functions in human. MicroRNAs ar
     biotools:primaryContact "Welliton Souza" .
 
 <https://bio.tools/rqt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0199,
@@ -415297,7 +438686,7 @@ RPRH is a database for predicted plant microRNA Functions in human. MicroRNAs ar
     biotools:primaryContact "Ilya Zhbannikov" .
 
 <https://bio.tools/rqtl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3053 ;
@@ -415313,7 +438702,7 @@ RPRH is a database for predicted plant microRNA Functions in human. MicroRNAs ar
     sc:url "http://www.rqtl.org/" .
 
 <https://bio.tools/rqubic> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203 ;
@@ -415332,8 +438721,42 @@ RPRH is a database for predicted plant microRNA Functions in human. MicroRNAs ar
     sc:url "http://bioconductor.org/packages/release/bioc/html/rqubic.html" ;
     biotools:primaryContact "Jitao David Zhang" .
 
+<https://bio.tools/rrcpred> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:description "This server allows you to predict the residue-residue contact in proteins from its amino acid sequence." ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "rrcpred" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/rrcpred/> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/rrcpred/" .
+
+<https://bio.tools/rrct> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_2269,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1016/J.PATTER.2022.100471>,
+        "pmcid:PMC9122960",
+        "pubmed:35607618" ;
+    sc:description "Relevance, redundancy, and complementarity trade-off (RRCT)." ;
+    sc:featureList edam:operation_3891,
+        edam:operation_3936,
+        edam:operation_3937 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "RRCT" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/ThanasisTsanas/RRCT" .
+
 <https://bio.tools/rrdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0602,
@@ -415349,23 +438772,8 @@ RPRH is a database for predicted plant microRNA Functions in human. MicroRNAs ar
     sc:url "http://huanglab.phys.hust.edu.cn/RRDbenchmark/" ;
     biotools:primaryContact "Sheng-You Huang" .
 
-<https://bio.tools/rrdf> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_2258,
-        edam:topic_2885,
-        edam:topic_3489 ;
-    sc:citation <https://doi.org/10.7287/PEERJ.PREPRINTS.185V3> ;
-    sc:description """Accessing biological data in R with semantic web technologies.
-
-Linked Open Data platform for EBI data.
-
-The EBI RDF Platform aims to bring together the efforts of a number of EMBL-EBI resources that provide access to their data using Semantic Web technologies. It provides a unified way to query across resources using the W3C SPARQL query language. We welcome comments or questions via email rdf-req[at]ebi.ac.uk or github""" ;
-    sc:featureList edam:operation_0224 ;
-    sc:license "GPL-3.0" ;
-    sc:name "rrdf" ;
-    sc:url "http://cran.r-project.org/web/packages/rrdf/" .
-
 <https://bio.tools/rrdncnn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3382,
@@ -415379,7 +438787,7 @@ The EBI RDF Platform aims to bring together the efforts of a number of EMBL-EBI
     sc:url "https://minhmanho.github.io/rrdncnn/" .
 
 <https://bio.tools/rrdp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -415398,7 +438806,7 @@ The EBI RDF Platform aims to bring together the efforts of a number of EMBL-EBI
     biotools:primaryContact "Michael Hahsler" .
 
 <https://bio.tools/rre> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3489 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/bth287> ;
@@ -415413,7 +438821,7 @@ The EBI RDF Platform aims to bring together the efforts of a number of EMBL-EBI
     sc:url "http://www.bioinformatica.unito.it/bioinformatics/rre/rre.html" .
 
 <https://bio.tools/rre-finder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0601,
         edam:topic_0632,
@@ -415436,7 +438844,7 @@ RREFinder accepts both protein .fasta files and .genbank files. Alternatively, y
     sc:url "https://github.com/Alexamk/RREFinder" .
 
 <https://bio.tools/rregrs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3569 ;
@@ -415454,8 +438862,31 @@ RREFinder accepts both protein .fasta files and .genbank files. Alternatively, y
     sc:url "https://github.com/enanomapper/RRegrs" ;
     biotools:primaryContact <http://orcid.org/0000-0001-7209-3670> .
 
+<https://bio.tools/rresolver> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0196,
+        edam:topic_2640,
+        edam:topic_3168 ;
+    sc:citation <https://doi.org/10.1186/S12859-022-04790-Z>,
+        "pmcid:PMC9215042",
+        "pubmed:35729491" ;
+    sc:description "Efficient short-read repeat resolution within ABySS." ;
+    sc:featureList edam:operation_0524,
+        edam:operation_0525,
+        edam:operation_3216,
+        edam:operation_3472,
+        edam:operation_3644 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "RResolver" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/bcgsc/abyss/tree/master/RResolver" .
+
 <https://bio.tools/rrho> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2269 ;
@@ -415473,7 +438904,7 @@ RREFinder accepts both protein .fasta files and .genbank files. Alternatively, y
     biotools:primaryContact "Jonathan Rosenblatt" .
 
 <https://bio.tools/rrintcc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0602,
         edam:topic_0625,
@@ -415493,7 +438924,7 @@ In genome-wide association study (GWAS), we aim at detecting single nucleotide p
     sc:url "http://bioinformatics.ust.hk/RRIntCC.html" .
 
 <https://bio.tools/rrlsl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0659,
         edam:topic_3512 ;
@@ -415509,7 +438940,7 @@ Although great progress has been made in prognostic outcome prediction, small sa
     sc:url "https://github.com/ShiMGLab/RRLSL" .
 
 <https://bio.tools/rrnaselector> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3174,
         edam:topic_3308 ;
@@ -415522,7 +438953,7 @@ Although great progress has been made in prognostic outcome prediction, small sa
     sc:url "http://hpc.ilri.cgiar.org/rrnaselector-software" .
 
 <https://bio.tools/rrnpp_detector> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0160,
@@ -415543,7 +438974,7 @@ Although great progress has been made in prognostic outcome prediction, small sa
     sc:url "https://github.com/TeamAIRE/RRNPP_detector" .
 
 <https://bio.tools/rrosetta> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3308,
@@ -415560,8 +438991,29 @@ Although great progress has been made in prognostic outcome prediction, small sa
     sc:url "https://github.com/komorowskilab/R.ROSETTA" ;
     biotools:primaryContact <https://orcid.org/0000-0002-0766-8789> .
 
+<https://bio.tools/rrqnet> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0082,
+        edam:topic_0102,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1002/prot.26394>,
+        "pubmed:35751651" ;
+    sc:description "Protein contact map quality estimation by deep evolutionary reconciliation." ;
+    sc:featureList edam:operation_0272,
+        edam:operation_0392,
+        edam:operation_2429,
+        edam:operation_3436 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "rrQNet" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/Bhattacharya-Lab/rrQNet" .
+
 <https://bio.tools/rrsb-plot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -415578,7 +439030,7 @@ Although great progress has been made in prognostic outcome prediction, small sa
     biotools:primaryContact "Ivan Brezani" .
 
 <https://bio.tools/rs-expnet-crnmf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2640 ;
     sc:citation <https://doi.org/10.1186/s12859-018-2218-y> ;
@@ -415594,7 +439046,7 @@ Although great progress has been made in prognostic outcome prediction, small sa
     biotools:primaryContact "Minghui Wang" .
 
 <https://bio.tools/rs-fish> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3382,
@@ -415606,7 +439058,7 @@ Although great progress has been made in prognostic outcome prediction, small sa
     biotools:primaryContact <https://orcid.org/0000-0002-0276-494X> .
 
 <https://bio.tools/rs-webpredictor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0140,
         edam:topic_3373,
@@ -415625,19 +439077,8 @@ Although great progress has been made in prognostic outcome prediction, small sa
     sc:url "http://reccr.chem.rpi.edu/Software/RS-WebPredictor/" ;
     biotools:primaryContact "Curt M. Breneman" .
 
-<https://bio.tools/rs1320632_MMP8_rs11225395_MMP8_rs1799750> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0749,
-        edam:topic_2885 ;
-    sc:citation <https://doi.org/10.18087/CARDIO.2598>,
-        "pubmed:31441739" ;
-    sc:description "> VERY_LOW CONFIDENCE! | > HOMEPAGE MISSING! | > CORRECT NAME OF TOOL COULD ALSO BE 'rs11568818 MMP7 rs1320632 MMP8 rs11225395', 'MMP7 rs1320632 MMP8 rs11225395 MMP8', 'MMP8 rs11225395 MMP8 rs1799750', 'rs1320632 MMP8 rs11225395 MMP8' | [Study of associations of polymorphism of matrix metalloproteinases genes with the development of arterial hypertension in men] | The aim of research. To study the association of polymorphic loci of matrix metalloproteinases with the development of essential hypertension (EH) in men of the Central Chernozem Region of Russia. Materials and methods. A study of 564 men with EH and 257 control men was performed. Analysis of the polymorphic loci of metalloproteinases rs11568818 MMР7, rs1320632 MMР8, rs11225395 MMР8, rs1799750 MMР1, rs3025058 MMР3 was performed using real-time PCR" ;
-    sc:featureList edam:operation_0484,
-        edam:operation_0487 ;
-    sc:name "rs1320632 MMP8 rs11225395 MMP8 rs1799750" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31441739" .
-
 <https://bio.tools/rsalvador> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3301,
@@ -415657,18 +439098,18 @@ Although great progress has been made in prognostic outcome prediction, small sa
 
 <https://bio.tools/rsamtools> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1383" ;
-            sc:name "Sequence alignment (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1383" ] ;
+            sc:additionalType "http://edamontology.org/data_1383" ;
+            sc:encodingFormat "http://edamontology.org/format_3616" ;
+            sc:name "Sequence alignment (nucleic acid)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2012" ;
-            sc:name "Sequence coordinates" ;
-            sc:sameAs "http://edamontology.org/data_2012" ],
+            sc:additionalType "http://edamontology.org/data_2012" ;
+            sc:encodingFormat "http://edamontology.org/format_3327" ;
+            sc:name "Sequence coordinates" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1383" ;
-            sc:name "Sequence alignment (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1383" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1383" ;
+            sc:encodingFormat "http://edamontology.org/format_3327" ;
+            sc:name "Sequence alignment (nucleic acid)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3170 ;
@@ -415688,7 +439129,7 @@ Although great progress has been made in prognostic outcome prediction, small sa
     biotools:primaryContact "BioConductor Package Maintainer" .
 
 <https://bio.tools/rsat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -415716,14 +439157,14 @@ Although great progress has been made in prognostic outcome prediction, small sa
 
 <https://bio.tools/rsat-retrieve-ensembl-seq> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0842" ;
-            sc:name "Identifier" ;
-            sc:sameAs "http://edamontology.org/data_0842" ] ;
+            sc:additionalType "http://edamontology.org/data_0842" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Identifier" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1234" ;
-            sc:name "Sequence set (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1234" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1234" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence set (nucleic acid)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application",
         "Web service" ;
@@ -415751,7 +439192,7 @@ Multi-genome queries are supported: automatic retrieval of sequences for all the
     biotools:primaryContact <https://orcid.org/0000-0003-1465-1640> .
 
 <https://bio.tools/rsat_peak-motifs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_3169,
@@ -415768,7 +439209,7 @@ Multi-genome queries are supported: automatic retrieval of sequences for all the
     biotools:primaryContact "Jacques van Helden" .
 
 <https://bio.tools/rsatrace3d> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0780,
@@ -415789,7 +439230,7 @@ Multi-genome queries are supported: automatic retrieval of sequences for all the
     sc:url "https://github.com/st707311g/RSAtrace3D" .
 
 <https://bio.tools/rsbml> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3071 ;
@@ -415807,7 +439248,7 @@ Multi-genome queries are supported: automatic retrieval of sequences for all the
     biotools:primaryContact "Michael Lawrence" .
 
 <https://bio.tools/rscripts_for_data_analysis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3307 ;
     sc:author "Alessandra Breschi" ;
@@ -415830,7 +439271,7 @@ Multi-genome queries are supported: automatic retrieval of sequences for all the
     biotools:primaryContact "Alessandra Breschi" .
 
 <https://bio.tools/rscudo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0203,
         edam:topic_3577 ;
@@ -415851,7 +439292,7 @@ BiomedicalInformatics, Classification, Clustering, DifferentialExpression, Featu
     sc:url "https://bioconductor.org/packages/rScudo" .
 
 <https://bio.tools/rsd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0797,
         edam:topic_1775,
@@ -415873,8 +439314,42 @@ BiomedicalInformatics, Classification, Clustering, DifferentialExpression, Featu
     sc:url "https://github.com/todddeluca/reciprocal_smallest_distance" ;
     biotools:primaryContact "Dennis Wall" .
 
+<https://bio.tools/rsdb> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2299" ;
+            sc:name "Gene name" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_3668" ;
+            sc:name "Disease name" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1001" ;
+            sc:name "Chemical name (synonymous)" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_3275" ;
+            sc:name "Phenotype name" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0209,
+        edam:topic_0625,
+        edam:topic_3325,
+        edam:topic_3373 ;
+    sc:citation <https://doi.org/10.1038/S41597-022-01654-2>,
+        "pmcid:PMC9418253",
+        "pubmed:36028515" ;
+    sc:description "A rare skin disease database to link drugs with potential drug targets for rare skin diseases." ;
+    sc:featureList edam:operation_3925,
+        edam:operation_4009 ;
+    sc:isAccessibleForFree true ;
+    sc:license "CC-BY-NC-SA-4.0" ;
+    sc:name "RSDB" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://rsdb.cmdm.tw" .
+
 <https://bio.tools/rseg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_2885,
@@ -415890,7 +439365,7 @@ BiomedicalInformatics, Classification, Clustering, DifferentialExpression, Featu
     sc:url "http://www.cs.au.dk/~plamy/Rseg/" .
 
 <https://bio.tools/rseg_chipseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3169,
         edam:topic_3179,
@@ -415904,7 +439379,7 @@ BiomedicalInformatics, Classification, Clustering, DifferentialExpression, Featu
     sc:url "http://smithlabresearch.org/software/rseg/" .
 
 <https://bio.tools/rsem> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3170 ;
     sc:citation "pubmed:20022975" ;
@@ -415918,7 +439393,7 @@ BiomedicalInformatics, Classification, Clustering, DifferentialExpression, Featu
     biotools:primaryContact "Bo Li" .
 
 <https://bio.tools/rseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0102,
@@ -415936,7 +439411,7 @@ BiomedicalInformatics, Classification, Clustering, DifferentialExpression, Featu
     sc:url "http://www-personal.umich.edu/~jianghui/rseq/" .
 
 <https://bio.tools/rseqan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3316 ;
     sc:description "Headers from the SeqAn C++ library for easy of usage in R." ;
@@ -415952,7 +439427,7 @@ BiomedicalInformatics, Classification, Clustering, DifferentialExpression, Featu
     biotools:primaryContact "August Guang" .
 
 <https://bio.tools/rseqc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/bts356>,
@@ -415966,7 +439441,7 @@ BiomedicalInformatics, Classification, Clustering, DifferentialExpression, Featu
     sc:url "http://rseqc.sourceforge.net" .
 
 <https://bio.tools/rseqflow> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_3168,
@@ -415983,7 +439458,7 @@ BiomedicalInformatics, Classification, Clustering, DifferentialExpression, Featu
     sc:url "http://genomics.isi.edu/rnaseq" .
 
 <https://bio.tools/rseqnorm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -416004,7 +439479,7 @@ BiomedicalInformatics, Classification, Clustering, DifferentialExpression, Featu
         "Yang Xie" .
 
 <https://bio.tools/rseqnp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0203,
@@ -416021,22 +439496,22 @@ BiomedicalInformatics, Classification, Clustering, DifferentialExpression, Featu
 
 <https://bio.tools/rseqrep> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3495" ;
-            sc:name "RNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3495" ] ;
+            sc:additionalType "http://edamontology.org/data_3495" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "RNA sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ],
+            sc:additionalType "http://edamontology.org/data_1636" ;
+            sc:encodingFormat "http://edamontology.org/format_3508" ;
+            sc:name "Heat map" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1636" ;
-            sc:name "Heat map" ;
-            sc:sameAs "http://edamontology.org/data_1636" ],
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_3508" ;
+            sc:name "Report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0928" ;
-            sc:name "Gene expression profile" ;
-            sc:sameAs "http://edamontology.org/data_0928" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0928" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Gene expression profile" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3170 ;
     sc:citation <https://doi.org/10.12688/f1000research.13049.2> ;
@@ -416056,7 +439531,7 @@ BiomedicalInformatics, Classification, Clustering, DifferentialExpression, Featu
     sc:url "https://github.com/emmesgit/RSEQREP" .
 
 <https://bio.tools/rseqtools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3170 ;
@@ -416072,7 +439547,7 @@ BiomedicalInformatics, Classification, Clustering, DifferentialExpression, Featu
     biotools:primaryContact "Lukas Habegger" .
 
 <https://bio.tools/rsffreader> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3168 ;
@@ -416090,7 +439565,7 @@ BiomedicalInformatics, Classification, Clustering, DifferentialExpression, Featu
     biotools:primaryContact "Matt Settles" .
 
 <https://bio.tools/rshrf_matlab> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_3384 ;
     sc:citation <https://doi.org/10.1016/J.NEUROIMAGE.2021.118591>,
@@ -416109,7 +439584,7 @@ BiomedicalInformatics, Classification, Clustering, DifferentialExpression, Featu
     sc:url "https://github.com/compneuro-da/rsHRF" .
 
 <https://bio.tools/rshrf_python> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3384 ;
     sc:citation <https://doi.org/10.1016/J.NEUROIMAGE.2021.118591>,
@@ -416127,7 +439602,7 @@ BiomedicalInformatics, Classification, Clustering, DifferentialExpression, Featu
     sc:url "https://github.com/BIDS-Apps/rsHRF" .
 
 <https://bio.tools/rsite> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0160,
@@ -416142,7 +439617,7 @@ BiomedicalInformatics, Classification, Clustering, DifferentialExpression, Featu
     sc:url "http://www.cuilab.cn/rsite" .
 
 <https://bio.tools/rslpred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0622,
@@ -416154,10 +439629,32 @@ BiomedicalInformatics, Classification, Clustering, DifferentialExpression, Featu
     sc:operatingSystem "Linux" ;
     sc:softwareHelp <http://crdd.osdd.net/raghava//rslpred/>,
         <http://crdd.osdd.net/raghava//rslpred/help_middle.html> ;
-    sc:url "http://www.imtech.res.in/raghava/rslpred/" .
+    sc:url "http://webs.iiitd.edu.in/raghava/rslpred/" .
+
+<https://bio.tools/rsnet> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0602,
+        edam:topic_3315 ;
+    sc:citation <https://doi.org/10.1186/S12859-022-04696-W>,
+        "pmcid:PMC9074326",
+        "pubmed:35524190" ;
+    sc:description "Inferring gene regulatory networks by a redundancy silencing and network enhancement technique." ;
+    sc:featureList edam:operation_1781,
+        edam:operation_2437,
+        edam:operation_3928 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "RSNET" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://github.com/zhanglab-wbgcas/RSNET/blob/main/Tutorial%20for%20RSNET.docx> ;
+    sc:url "https://github.com/zhanglab-wbgcas/rsnet" .
 
 <https://bio.tools/rsnp_guide> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0203,
@@ -416178,16 +439675,35 @@ BiomedicalInformatics, Classification, Clustering, DifferentialExpression, Featu
     sc:url "http://wwwmgs.bionet.nsc.ru/mgs/systems/rsnp/" ;
     biotools:primaryContact "Julia V. Ponomarenko" .
 
+<https://bio.tools/rspatialdata> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Suite" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_0610,
+        edam:topic_3489,
+        edam:topic_3810 ;
+    sc:citation <https://doi.org/10.12688/f1000research.122764.1>,
+        "pmcid:PMC9363973",
+        "pubmed:36016994" ;
+    sc:description "A collection of data sources and tutorials on downloading and visualising spatial data using R." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_2429 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "rspatialdata" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://rspatialdata.github.io/" .
+
 <https://bio.tools/rspred> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:name "Protein sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:name "Protein features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1186/1471-2164-12-119> ;
@@ -416203,7 +439719,7 @@ BiomedicalInformatics, Classification, Clustering, DifferentialExpression, Featu
     sc:url "http://persson-group.scilifelab.se/rspred/" .
 
 <https://bio.tools/rsrnasp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0097,
@@ -416225,7 +439741,7 @@ BiomedicalInformatics, Classification, Clustering, DifferentialExpression, Featu
     sc:url "https://github.com/Tan-group/rsRNASP" .
 
 <https://bio.tools/rssalib> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0821,
         edam:topic_3315 ;
@@ -416243,7 +439759,7 @@ The Java-based implementation of the rejection-based stochastic simulation algor
     sc:url "https://github.com/vo-hong-thanh/rssalib" .
 
 <https://bio.tools/rssgsc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0605,
         edam:topic_2269,
@@ -416259,7 +439775,7 @@ The Java-based implementation of the rejection-based stochastic simulation algor
     sc:url "http://rssgsc.sourceforge.net/" .
 
 <https://bio.tools/rsss> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0099,
@@ -416273,7 +439789,7 @@ The Java-based implementation of the rejection-based stochastic simulation algor
     sc:url "https://github.com/boboppie/RSSS" .
 
 <https://bio.tools/rsssite> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0654,
@@ -416294,7 +439810,7 @@ The Java-based implementation of the rejection-based stochastic simulation algor
     sc:url "http://www.itb.cnr.it/rss" .
 
 <https://bio.tools/rssvm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0099,
@@ -416311,7 +439827,7 @@ The Java-based implementation of the rejection-based stochastic simulation algor
     sc:url "http://stormo.wustl.edu/RSSVM/" .
 
 <https://bio.tools/rstoolbox> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0130,
         edam:topic_0736 ;
@@ -416334,7 +439850,7 @@ The Java-based implementation of the rejection-based stochastic simulation algor
     biotools:primaryContact "Jaume Bonet" .
 
 <https://bio.tools/rstudio> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3315,
@@ -416352,14 +439868,14 @@ The Java-based implementation of the rejection-based stochastic simulation algor
 
 <https://bio.tools/rsubread> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1383" ;
-            sc:name "Sequence alignment (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1383" ] ;
+            sc:additionalType "http://edamontology.org/data_1383" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
+            sc:name "Sequence alignment (nucleic acid)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Sequence alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0204,
@@ -416381,7 +439897,7 @@ The Java-based implementation of the rejection-based stochastic simulation algor
     biotools:primaryContact "Wei Shi" .
 
 <https://bio.tools/rsvdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0097,
         edam:topic_0659,
@@ -416401,7 +439917,7 @@ RNA fulfills a crucial regulatory role in cells by folding into a complex RNA st
     sc:url "https://taolab.nwafu.edu.cn/rsvdb/" .
 
 <https://bio.tools/rsvp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0623,
         edam:topic_0654,
@@ -416415,7 +439931,7 @@ RNA fulfills a crucial regulatory role in cells by folding into a complex RNA st
     sc:url "https://ohlerlab.mdc-berlin.de/software/RNA-seq_Variant_Prediction_61/" .
 
 <https://bio.tools/rsvsim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3175 ;
@@ -416433,7 +439949,7 @@ RNA fulfills a crucial regulatory role in cells by folding into a complex RNA st
     biotools:primaryContact "Christoph Bartenhagen" .
 
 <https://bio.tools/rswebtool> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0602,
@@ -416457,14 +439973,14 @@ RNA fulfills a crucial regulatory role in cells by folding into a complex RNA st
 
 <https://bio.tools/rt> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ] ;
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_3655" ;
+            sc:name "Peptide identification" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2016" ;
-            sc:name "Amino acid property" ;
-            sc:sameAs "http://edamontology.org/data_2016" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2016" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Amino acid property" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -416479,8 +439995,25 @@ RNA fulfills a crucial regulatory role in cells by folding into a complex RNA st
     sc:softwareHelp <http://www.ms-utils.org/rt4.html> ;
     sc:url "http://www.ms-utils.org/rt.html" .
 
+<https://bio.tools/rt-cloud> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_3316,
+        edam:topic_3384,
+        edam:topic_3444 ;
+    sc:citation <https://doi.org/10.1016/J.NEUROIMAGE.2022.119295>,
+        "pubmed:35580808" ;
+    sc:description "A cloud-based software framework to simplify and standardize real-time fMRI." ;
+    sc:isAccessibleForFree true ;
+    sc:license "Apache-2.0" ;
+    sc:name "RT-Cloud" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/brainiak/rt-cloud" .
+
 <https://bio.tools/rt-me-fmri> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3067,
         edam:topic_3300,
         edam:topic_3334,
@@ -416503,7 +440036,7 @@ In order to use this feature you must have at least one published dataverse."""
     sc:url "https://rt-me-fmri.herokuapp.com/" .
 
 <https://bio.tools/rt-net> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3304,
         edam:topic_3444,
         edam:topic_3520 ;
@@ -416518,7 +440051,7 @@ RT-NET (real-time non-invasive electrophysiology toolbox), is a new software whi
     sc:url "https://www.nitrc.org/projects/rtnet" .
 
 <https://bio.tools/rtabnetsp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3305,
         edam:topic_3489 ;
@@ -416532,7 +440065,7 @@ RT-NET (real-time non-invasive electrophysiology toolbox), is a new software whi
     sc:url "https://github.com/joaohmorais/rtabnetsp" .
 
 <https://bio.tools/rtanalyzer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0659,
@@ -416555,7 +440088,7 @@ RT-NET (real-time non-invasive electrophysiology toolbox), is a new software whi
         "RT-analyzer Support" .
 
 <https://bio.tools/rtanalyzer-retro> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654,
@@ -416571,7 +440104,7 @@ RT-NET (real-time non-invasive electrophysiology toolbox), is a new software whi
     sc:url "http://biotools.riboclub.org/cgi-bin/RTAnalyzer/index.pl" .
 
 <https://bio.tools/rtandem> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2814 ;
@@ -416590,14 +440123,14 @@ RT-NET (real-time non-invasive electrophysiology toolbox), is a new software whi
 
 <https://bio.tools/rtca> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2872" ;
-            sc:name "ID list" ;
-            sc:sameAs "http://edamontology.org/data_2872" ] ;
+            sc:additionalType "http://edamontology.org/data_2872" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "ID list" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3604" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0092 ;
@@ -416616,14 +440149,14 @@ RT-NET (real-time non-invasive electrophysiology toolbox), is a new software whi
 
 <https://bio.tools/rtcga> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2080" ;
-            sc:name "Database search results" ;
-            sc:sameAs "http://edamontology.org/data_2080" ] ;
+            sc:additionalType "http://edamontology.org/data_2080" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Database search results" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2080" ;
-            sc:name "Database search results" ;
-            sc:sameAs "http://edamontology.org/data_2080" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2080" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Database search results" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0622,
@@ -416644,7 +440177,7 @@ RT-NET (real-time non-invasive electrophysiology toolbox), is a new software whi
     biotools:primaryContact "Marcin Kosinski" .
 
 <https://bio.tools/rtcgatoolbox> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0622,
@@ -416664,8 +440197,26 @@ RT-NET (real-time non-invasive electrophysiology toolbox), is a new software whi
     sc:url "http://bioconductor.org/packages/release/bioc/html/RTCGAToolbox.html" ;
     biotools:primaryContact "Mehmet Kemal Samur" .
 
+<https://bio.tools/rtdsm> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_0621,
+        edam:topic_2640 ;
+    sc:citation <https://doi.org/10.1002/MP.15900>,
+        "pubmed:35912447" ;
+    sc:description "Open-source software for radiotherapy dose-surface map generation and analysis." ;
+    sc:featureList edam:operation_3799 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "rtdsm" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/McGillMedPhys/rtdsm" .
+
 <https://bio.tools/rtfmri> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3067,
         edam:topic_3300,
         edam:topic_3444 ;
@@ -416681,7 +440232,7 @@ Magnetic resonance imaging (MRI) data of the brains of 28 healthy volunteers, fo
     sc:url "https://dataverse.nl/dataverse/rt-me-fmri" .
 
 <https://bio.tools/rtfmri-nf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0202,
         edam:topic_3384,
         edam:topic_3421,
@@ -416700,8 +440251,23 @@ The work investigated the state of denoising methods used in the field of fMRI n
     sc:name "rtfMRI-NF" ;
     sc:url "https://github.com/jsheunis/quality-and-denoising-in-rtfmri-nf" .
 
+<https://bio.tools/rtg_core> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Suite" ;
+    sc:applicationSubCategory edam:topic_0622 ;
+    sc:description "RTG Core: Software for alignment and analysis of next-gen sequencing data." ;
+    sc:featureList edam:operation_0258,
+        edam:operation_0292 ;
+    sc:isAccessibleForFree false ;
+    sc:license "Other" ;
+    sc:name "RTG Core" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/RealTimeGenomics/rtg-core" .
+
 <https://bio.tools/rtips> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0097,
@@ -416718,8 +440284,30 @@ The work investigated the state of denoising methods used in the field of fMRI n
     sc:url "https://rtips.cancer.gov/rtips/index.do" ;
     biotools:primaryContact "Contact Form" .
 
+<https://bio.tools/rtivity> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0202,
+        edam:topic_0610,
+        edam:topic_2840,
+        edam:topic_3304,
+        edam:topic_3500 ;
+    sc:citation <https://doi.org/10.1038/S41598-022-08195-Z>,
+        "pmcid:PMC8907194",
+        "pubmed:35264711" ;
+    sc:description "Automated analysis of activity, sleep, and rhythmic behaviour in various animal species with the Rtivity software." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3435 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "Rtivity" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://ruisilva.shinyapps.io/rtivity/" .
+
 <https://bio.tools/rtk> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3056,
         edam:topic_3301,
@@ -416736,7 +440324,7 @@ The work investigated the state of denoising methods used in the field of fMRI n
     biotools:primaryContact "Paul Saary" .
 
 <https://bio.tools/rtmpt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2269 ;
     sc:citation <https://doi.org/10.3758/S13428-019-01318-X>,
         "pubmed:32377974" ;
@@ -416750,7 +440338,7 @@ The manual for the package: rtmpt_manual.""" ;
     sc:url "https://github.com/RaphaelHartmann/rtmpt" .
 
 <https://bio.tools/rtn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0602,
@@ -416771,7 +440359,7 @@ The manual for the package: rtmpt_manual.""" ;
     biotools:primaryContact <http://orcid.org/0000-0003-4942-8131> .
 
 <https://bio.tools/rtnduals> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0204 ;
@@ -416790,7 +440378,7 @@ The manual for the package: rtmpt_manual.""" ;
         "Mauro Castro" .
 
 <https://bio.tools/rtnsurvival> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0204 ;
     sc:citation <https://doi.org/10.1038/ng.3458> ;
@@ -416809,7 +440397,7 @@ The manual for the package: rtmpt_manual.""" ;
         "Mauro A. A. Castro" .
 
 <https://bio.tools/rtopper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203 ;
@@ -416829,7 +440417,7 @@ The manual for the package: rtmpt_manual.""" ;
     biotools:primaryContact <http://orcid.org/0000-0002-7336-8071> .
 
 <https://bio.tools/rtp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_2269,
@@ -416845,7 +440433,7 @@ The manual for the package: rtmpt_manual.""" ;
     sc:url "https://sites.google.com/site/fdudbridge/software" .
 
 <https://bio.tools/rtpc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3068,
         edam:topic_3315 ;
@@ -416858,7 +440446,7 @@ The manual for the package: rtmpt_manual.""" ;
     sc:url "https://padpadpadpad.github.io/rTPC" .
 
 <https://bio.tools/rtpca> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
         edam:topic_0128 ;
@@ -416872,8 +440460,27 @@ The manual for the package: rtmpt_manual.""" ;
     sc:name "Rtpca" ;
     sc:url "https://bioconductor.org/packages/Rtpca" .
 
+<https://bio.tools/rtpspy> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0749,
+        edam:topic_0769,
+        edam:topic_3382 ;
+    sc:citation <https://doi.org/10.3389/fnins.2022.834827>,
+        "pmcid:PMC8963181",
+        "pubmed:35360171" ;
+    sc:description "A library for fMRI real-time processing systems in python (RTPSpy) with comprehensive online noise reduction, fast and accurate anatomical image processing, and online processing simulation." ;
+    sc:featureList edam:operation_3443 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "RTPSpy" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/mamisaki/RTPSpy" .
+
 <https://bio.tools/rtr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3170,
         edam:topic_3308,
@@ -416893,7 +440500,7 @@ The rat is an important model organism in biomedical research for studying human
     sc:url "http://www.unimd.org/rtr/" .
 
 <https://bio.tools/rtrack> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3382,
         edam:topic_3474 ;
@@ -416916,14 +440523,14 @@ A core functionality of the Rtrack package is the calculation of metrics from th
 
 <https://bio.tools/rtracklayer> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ] ;
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_3005" ;
+            sc:name "Annotation track" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_3005" ;
+            sc:name "Annotation track" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3047,
@@ -416945,7 +440552,7 @@ A core functionality of the Rtrack package is the calculation of metrics from th
     biotools:primaryContact "Michael Lawrence" .
 
 <https://bio.tools/rtree> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3053 ;
@@ -416961,7 +440568,7 @@ A core functionality of the Rtrack package is the calculation of metrics from th
     sc:url "http://c2s2.yale.edu/software/rtree/" .
 
 <https://bio.tools/rtreemix> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0199 ;
@@ -416979,7 +440586,7 @@ A core functionality of the Rtrack package is the calculation of metrics from th
     biotools:primaryContact "Jasmina Bogojeska" .
 
 <https://bio.tools/rtrm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0128 ;
@@ -416999,7 +440606,7 @@ A core functionality of the Rtrack package is the calculation of metrics from th
     biotools:primaryContact <http://orcid.org/0000-0002-2325-4893> .
 
 <https://bio.tools/rtrmui> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0749 ;
@@ -417017,7 +440624,7 @@ A core functionality of the Rtrack package is the calculation of metrics from th
     biotools:primaryContact "Diego Diez" .
 
 <https://bio.tools/rtxi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_3077 ;
     sc:citation <https://doi.org/10.1371/journal.pcbi.1005430> ;
@@ -417034,7 +440641,7 @@ A core functionality of the Rtrack package is the calculation of metrics from th
     sc:url "http://rtxi.org/" .
 
 <https://bio.tools/rubi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1007/s00726-013-1645-3>,
@@ -417052,7 +440659,7 @@ A core functionality of the Rtrack package is the calculation of metrics from th
     biotools:primaryContact <http://orcid.org/0000-0003-4525-7793> .
 
 <https://bio.tools/rubic> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "RUBIC detects recurrent copy number aberrations using copy number breaks, rather than recurrently amplified or deleted regions. This allows for a vastly simplified approach as recursive peak splitting procedures and repeated re-estimation of the background model are avoided. Furthermore, the false discovery rate is controlled on the level of called regions, rather than at the probe level." ;
     sc:featureList edam:operation_3964 ;
     sc:name "rubic" ;
@@ -417060,7 +440667,7 @@ A core functionality of the Rtrack package is the calculation of metrics from th
     sc:url "https://github.com/NKI-CCB/RUBIC" .
 
 <https://bio.tools/rubioseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_3168,
@@ -417077,7 +440684,7 @@ A core functionality of the Rtrack package is the calculation of metrics from th
     biotools:primaryContact "Contact form" .
 
 <https://bio.tools/rucs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0607,
@@ -417096,7 +440703,7 @@ A core functionality of the Rtrack package is the calculation of metrics from th
     biotools:primaryContact "Martin Christen Frølund Thomsen" .
 
 <https://bio.tools/rudrec> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0202,
         edam:topic_3378,
@@ -417111,7 +440718,7 @@ A core functionality of the Rtrack package is the calculation of metrics from th
     sc:url "https://github.com/cimm-kzn/RuDReC" .
 
 <https://bio.tools/rulebender> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2259,
@@ -417128,7 +440735,7 @@ A core functionality of the Rtrack package is the calculation of metrics from th
     sc:url "http://visualizlab.org/rulebender/" .
 
 <https://bio.tools/rulego> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0203,
@@ -417146,7 +440753,7 @@ A core functionality of the Rtrack package is the calculation of metrics from th
     biotools:primaryContact "Aleksandra Gruca" .
 
 <https://bio.tools/rum> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3170 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btr427>,
@@ -417165,14 +440772,14 @@ A core functionality of the Rtrack package is the calculation of metrics from th
 
 <https://bio.tools/runbiosimulations> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3869" ;
-            sc:name "Simulation" ;
-            sc:sameAs "http://edamontology.org/data_3869" ] ;
+            sc:additionalType "http://edamontology.org/data_3869" ;
+            sc:encodingFormat "http://edamontology.org/format_3686" ;
+            sc:name "Simulation" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3869" ;
-            sc:name "Simulation" ;
-            sc:sameAs "http://edamontology.org/data_3869" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3869" ;
+            sc:encodingFormat "http://edamontology.org/format_3508" ;
+            sc:name "Simulation" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2259,
         edam:topic_3307,
         edam:topic_3524 ;
@@ -417184,16 +440791,16 @@ A core functionality of the Rtrack package is the calculation of metrics from th
     sc:isAccessibleForFree true ;
     sc:license "MIT" ;
     sc:name "runBioSimulations" ;
-    sc:softwareHelp <https://github.com/biosimulations/Biosimulations/blob/dev/CODE_OF_CONDUCT.md>,
-        <https://github.com/biosimulations/Biosimulations/blob/dev/CONTRIBUTING.md>,
-        <https://run.biosimulations.org/api/>,
-        <https://run.biosimulations.org/help>,
-        <https://run.biosimulations.org/help/faq>,
-        <https://run.biosimulations.org/help/terms> ;
+    sc:softwareHelp <https://api.biosimulations.org>,
+        <https://docs.biosimulations.org>,
+        <https://docs.biosimulations.org/about/terms/>,
+        <https://docs.biosimulations.org/community/contributing/>,
+        <https://docs.biosimulations.org/developers/conduct/>,
+        <https://docs.biosimulations.org/users/faqs/> ;
     sc:url "https://run.biosimulations.org" .
 
 <https://bio.tools/runbng> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0199,
@@ -417211,7 +440818,7 @@ A core functionality of the Rtrack package is the calculation of metrics from th
     biotools:primaryContact "Dave Edwards" .
 
 <https://bio.tools/runcer-necromancer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_2229,
         edam:topic_3168 ;
@@ -417226,7 +440833,7 @@ Data recovery tool for interrupted runs on MGISEQ-2000 (now DNBSEQ-G400).""" ;
     sc:url "https://github.com/genomecenter/runcer-necromancer" .
 
 <https://bio.tools/runibic> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3168,
@@ -417247,7 +440854,7 @@ Data recovery tool for interrupted runs on MGISEQ-2000 (now DNBSEQ-G400).""" ;
     biotools:primaryContact "Patryk Orzechowski" .
 
 <https://bio.tools/runsbml> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2259 ;
@@ -417261,7 +440868,7 @@ Data recovery tool for interrupted runs on MGISEQ-2000 (now DNBSEQ-G400).""" ;
     sc:url "http://sourceforge.net/projects/runsbml/" .
 
 <https://bio.tools/rupee> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0082,
         edam:topic_0166,
@@ -417282,7 +440889,7 @@ RUPEE: A fast and accurate purely geometric protein structure search.""" ;
     sc:url "https://ayoubresearch.com" .
 
 <https://bio.tools/rus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0593,
         edam:topic_3344,
@@ -417298,7 +440905,7 @@ RUPEE: A fast and accurate purely geometric protein structure search.""" ;
     biotools:primaryContact "Matt Fig" .
 
 <https://bio.tools/rust-bio> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_3168 ;
@@ -417315,7 +440922,7 @@ RUPEE: A fast and accurate purely geometric protein structure search.""" ;
     sc:url "https://rust-bio.github.io/" .
 
 <https://bio.tools/rust-expression-browser> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0780,
@@ -417334,7 +440941,7 @@ RUPEE: A fast and accurate purely geometric protein structure search.""" ;
     biotools:primaryContact <https://orcid.org/0000-0003-2847-5721> .
 
 <https://bio.tools/ruth> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0625,
         edam:topic_2269,
@@ -417354,7 +440961,7 @@ ruth is a software to perform robust unified Hardy-Weinberg Equilbrium (HWE) tes
     sc:url "https://www.github.com/statgen/ruth" .
 
 <https://bio.tools/ruv-iii-nb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3174,
@@ -417369,7 +440976,7 @@ ruth is a software to perform robust unified Hardy-Weinberg Equilbrium (HWE) tes
     biotools:primaryContact <https://orcid.org/0000-0003-3999-7701> .
 
 <https://bio.tools/ruvcorr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0199,
@@ -417388,7 +440995,7 @@ ruth is a software to perform robust unified Hardy-Weinberg Equilbrium (HWE) tes
     biotools:primaryContact "Saskia Freytag" .
 
 <https://bio.tools/ruvnormalize> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203 ;
@@ -417409,14 +441016,14 @@ ruth is a software to perform robust unified Hardy-Weinberg Equilbrium (HWE) tes
 
 <https://bio.tools/ruvseq> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3495" ;
-            sc:name "RNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3495" ] ;
+            sc:additionalType "http://edamontology.org/data_3495" ;
+            sc:encodingFormat "http://edamontology.org/format_1919" ;
+            sc:name "RNA sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -417436,7 +441043,7 @@ ruth is a software to perform robust unified Hardy-Weinberg Equilbrium (HWE) tes
     biotools:primaryContact "Davide Risso" .
 
 <https://bio.tools/rv-typer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0623,
@@ -417453,7 +441060,7 @@ ruth is a software to perform robust unified Hardy-Weinberg Equilbrium (HWE) tes
     biotools:primaryContact "Urmila Kulkarni-Kale" .
 
 <https://bio.tools/rvboost> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_3168,
@@ -417470,7 +441077,7 @@ ruth is a software to perform robust unified Hardy-Weinberg Equilbrium (HWE) tes
         "Saurabh Baheti" .
 
 <https://bio.tools/rvd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0781 ;
     sc:citation <https://doi.org/10.1002/jgm.786> ;
@@ -417485,7 +441092,7 @@ ruth is a software to perform robust unified Hardy-Weinberg Equilbrium (HWE) tes
     sc:url "http://dna.brc.riken.jp/rvd/" .
 
 <https://bio.tools/rvd-variant> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0654,
@@ -417501,7 +441108,7 @@ ruth is a software to perform robust unified Hardy-Weinberg Equilbrium (HWE) tes
     sc:url "http://genomics.wpi.edu/rvd2/" .
 
 <https://bio.tools/rvdb-prot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0160,
         edam:topic_0769,
@@ -417520,7 +441127,7 @@ ruth is a software to perform robust unified Hardy-Weinberg Equilbrium (HWE) tes
     sc:url "https://gitlab.pasteur.fr/tbigot/rvdb-prot/" .
 
 <https://bio.tools/rvfam> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2885,
         edam:topic_3053,
@@ -417536,7 +441143,7 @@ ruth is a software to perform robust unified Hardy-Weinberg Equilbrium (HWE) tes
     sc:url "https://cran.r-project.org/web/packages/RVFam/" .
 
 <https://bio.tools/rvgwas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_0769,
         edam:topic_3305,
@@ -417552,7 +441159,7 @@ ruth is a software to perform robust unified Hardy-Weinberg Equilbrium (HWE) tes
     sc:url "https://github.com/hanasusak/rvGWAS" .
 
 <https://bio.tools/rvista> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0654,
@@ -417570,7 +441177,7 @@ ruth is a software to perform robust unified Hardy-Weinberg Equilbrium (HWE) tes
     biotools:primaryContact "rVista Support" .
 
 <https://bio.tools/rvpedigree> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0625,
@@ -417592,7 +441199,7 @@ ruth is a software to perform robust unified Hardy-Weinberg Equilbrium (HWE) tes
     biotools:primaryContact "Karim Oualkacha" .
 
 <https://bio.tools/rvs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_3053,
@@ -417608,7 +441215,7 @@ ruth is a software to perform robust unified Hardy-Weinberg Equilbrium (HWE) tes
     sc:url "http://strug.ccb.sickkids.ca/rvs/index.html" .
 
 <https://bio.tools/rvs-r> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0622,
@@ -417632,7 +441239,7 @@ Rare Variant Sharing (RVS) implements tests of association and linkage between r
     sc:url "http://bioconductor.org/packages/release/bioc/html/RVS.html" .
 
 <https://bio.tools/rvsel> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_3053,
@@ -417646,7 +441253,7 @@ Rare Variant Sharing (RVS) implements tests of association and linkage between r
     sc:url "http://www.columbia.edu/~sw2206/softwares.htm" .
 
 <https://bio.tools/rvsharing> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_2269,
@@ -417662,7 +441269,7 @@ Rare Variant Sharing (RVS) implements tests of association and linkage between r
     sc:url "http://www.crulrg.ulaval.ca/pages_perso_chercheurs/bureau_a/software.html" .
 
 <https://bio.tools/rvtests> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_3053,
@@ -417678,8 +441285,31 @@ Rare Variant Sharing (RVS) implements tests of association and linkage between r
     sc:softwareHelp <http://zhanxw.github.io/rvtests/#introduction> ;
     sc:url "http://zhanxw.github.io/rvtests/" .
 
+<https://bio.tools/rwd-cockpit> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_0968" ;
+            sc:name "Keyword" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0625,
+        edam:topic_3063,
+        edam:topic_3303,
+        edam:topic_3360,
+        edam:topic_3379 ;
+    sc:citation <https://doi.org/10.2196/29920>,
+        "pubmed:35266872" ;
+    sc:description "The RWD app provides a platform to view and search for quality-scored real-world datasets." ;
+    sc:featureList edam:operation_2421,
+        edam:operation_2428 ;
+    sc:isAccessibleForFree true ;
+    sc:name "RWD-Cockpit" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://rwd.aihealth.ch/" .
+
 <https://bio.tools/rwikipathways> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3172,
@@ -417702,7 +441332,7 @@ Rare Variant Sharing (RVS) implements tests of association and linkage between r
         "Alexander Pico" .
 
 <https://bio.tools/rwrf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_2640,
@@ -417722,7 +441352,7 @@ Rare Variant Sharing (RVS) implements tests of association and linkage between r
         "Song He" .
 
 <https://bio.tools/rwrmtn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_0659,
         edam:topic_0769,
@@ -417745,7 +441375,7 @@ To facilitate the use of this method, we have developed a Cytoscape app, named R
     sc:url "http://apps.cytoscape.org/apps/rwrmtn" .
 
 <https://bio.tools/rxa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0623,
@@ -417761,7 +441391,7 @@ To facilitate the use of this method, we have developed a Cytoscape app, named R
     sc:url "https://jshare.johnshopkins.edu/dnaiman1/public_html/rxa/" .
 
 <https://bio.tools/rxgenes> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3053,
         edam:topic_3068,
@@ -417787,7 +441417,7 @@ The rx-genes.com site does not provide medical advice. It is intended for inform
     sc:url "https://www.rx-genes.com/" .
 
 <https://bio.tools/rxnat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0605,
         edam:topic_3384,
         edam:topic_3444,
@@ -417809,7 +441439,7 @@ To use system environment variables we need to add them to the .Renviron file lo
     sc:url "https://github.com/adigherman/Rxnat" .
 
 <https://bio.tools/rxnblast> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0821,
         edam:topic_3303,
@@ -417825,7 +441455,7 @@ RxnBLAST as a web-based tool for analyzing scaffold transformations and reactive
     sc:url "http://design.rxnfinder.org/rxnblast/" .
 
 <https://bio.tools/rxnorm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1109/MITP.2005.122> ;
@@ -417839,7 +441469,7 @@ RxnBLAST as a web-based tool for analyzing scaffold transformations and reactive
     sc:url "https://www.nlm.nih.gov/research/umls/rxnorm/" .
 
 <https://bio.tools/rxsci> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0202,
         edam:topic_3334,
@@ -417860,7 +441490,7 @@ RxnBLAST as a web-based tool for analyzing scaffold transformations and reactive
     sc:url "https://jutzelec.shinyapps.io/RxSCI/" .
 
 <https://bio.tools/ryuto> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0203,
@@ -417877,7 +441507,7 @@ RxnBLAST as a web-based tool for analyzing scaffold transformations and reactive
     sc:url "https://github.com/studla/RYUTO" .
 
 <https://bio.tools/rzparser> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0099,
@@ -417891,7 +441521,7 @@ RxnBLAST as a web-based tool for analyzing scaffold transformations and reactive
     sc:url "http://www.softpedia.com/get/Science-CAD/RZparser.shtml" .
 
 <https://bio.tools/s-cuda> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_3384,
         edam:topic_3474,
@@ -417909,7 +441539,7 @@ RxnBLAST as a web-based tool for analyzing scaffold transformations and reactive
     sc:url "https://github.com/zzdxjtu/S-cuda" .
 
 <https://bio.tools/s-lwsr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3382,
         edam:topic_3474 ;
@@ -417923,7 +441553,7 @@ RxnBLAST as a web-based tool for analyzing scaffold transformations and reactive
     sc:url "https://github.com/Sudo-Biao/s-LWSR" .
 
 <https://bio.tools/s-mart> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_3169,
@@ -417939,8 +441569,32 @@ RxnBLAST as a web-based tool for analyzing scaffold transformations and reactive
     sc:url "http://urgi.versailles.inra.fr/Tools/S-MART" ;
     biotools:primaryContact "Matthias Zytnicki" .
 
+<https://bio.tools/s-pred> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0082,
+        edam:topic_0154,
+        edam:topic_2814,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1038/S41598-022-18205-9>,
+        "pmcid:PMC9381718",
+        "pubmed:35974061" ;
+    sc:description "Protein structural property prediction using MSA transformer." ;
+    sc:featureList edam:operation_0267,
+        edam:operation_0272,
+        edam:operation_0474,
+        edam:operation_3454,
+        edam:operation_3904 ;
+    sc:isAccessibleForFree true ;
+    sc:license "CC-BY-NC-SA-4.0" ;
+    sc:name "S-Pred" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/arontier/S_Pred_Paper" .
+
 <https://bio.tools/s-psorter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2229 ;
@@ -417954,8 +441608,20 @@ RxnBLAST as a web-based tool for analyzing scaffold transformations and reactive
     sc:softwareHelp <https://github.com/shaoweinuaa/S-PSorter> ;
     sc:url "https://github.com/shaoweinuaa/S-PSorter" .
 
+<https://bio.tools/s2d> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:citation <https://doi.org/10.1016/j.jmb.2014.12.007>,
+        "pubmed:25534081" ;
+    sc:description "s2D is a computational method to predict secondary-structure populations from amino acid sequences, which simultaneously characterizes structure and disorder in a unified statistical mechanics framework." ;
+    sc:license "GPL-3.0" ;
+    sc:name "s2D" ;
+    sc:operatingSystem "Linux" ;
+    sc:softwareVersion "v1.1" ;
+    sc:url "http://www-mvsoftware.ch.cam.ac.uk/index.php/s2D" .
+
 <https://bio.tools/s2l-psiblast> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082 ;
     sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAB472>,
@@ -417972,7 +441638,7 @@ RxnBLAST as a web-based tool for analyzing scaffold transformations and reactive
     sc:url "http://bliulab.net/S2L-PSIBLAST" .
 
 <https://bio.tools/s2o> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0219,
         edam:topic_3063,
@@ -417993,7 +441659,7 @@ RxnBLAST as a web-based tool for analyzing scaffold transformations and reactive
         "Philipp Bruland" .
 
 <https://bio.tools/s2p> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0108 ;
     sc:citation <https://doi.org/10.1007/978-3-319-60816-7> ;
@@ -418011,7 +441677,7 @@ RxnBLAST as a web-based tool for analyzing scaffold transformations and reactive
     biotools:primaryContact "S2P" .
 
 <https://bio.tools/s2rsldb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_2258,
@@ -418028,7 +441694,7 @@ RxnBLAST as a web-based tool for analyzing scaffold transformations and reactive
     biotools:primaryContact "Emanuele Amata" .
 
 <https://bio.tools/s3v2-ideas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_2229,
         edam:topic_3173 ;
@@ -418044,7 +441710,7 @@ In the package, it can first normalize average read counts signal by S3norm ver2
     sc:url "https://github.com/guanjue/S3V2_IDEAS_ESMP" .
 
 <https://bio.tools/s4nn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2815,
         edam:topic_3334,
         edam:topic_3474 ;
@@ -418058,7 +441724,7 @@ In the package, it can first normalize average read counts signal by S3norm ver2
     sc:url "https://github.com/SRKH/S4NN" .
 
 <https://bio.tools/s4vectors> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3569 ;
@@ -418075,26 +441741,8 @@ In the package, it can first normalize average read counts signal by S3norm ver2
     sc:url "http://bioconductor.org/packages/release/bioc/html/S4Vectors.html" ;
     biotools:primaryContact "BioConductor Package Maintainer" .
 
-<https://bio.tools/sDR_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3070,
-        edam:topic_3318,
-        edam:topic_3382 ;
-    sc:citation <https://doi.org/10.1364/OE.27.031246>,
-        "pubmed:31684360" ;
-    sc:description """Semi-implicit relaxed Douglas-Rachford algorithm (sDR) for ptychography.
-
-Free Matlab Source Codes for the semi-implicit relaxed Douglas-Rachford (sDR) Algorithm.
-
-Free Matlab Source Codes for the semi implicit relaxed Douglas-Rachford (sDR).
-
-This page describes an iterative Ptychography reconstruction algorithm, termed semi-implicit relaxed Douglas-Rachford (sDR), which has been developed to improve the robustness and the convergence of sequential extended Ptychographic iteartive engine (ePIE)""" ;
-    sc:featureList edam:operation_2422,
-        edam:operation_3454 ;
-    sc:name "sDR_autogenerated" ;
-    sc:url "http://www.physics.ucla.edu/research/imaging/sDR/index.html" .
-
 <https://bio.tools/sORFs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
@@ -418119,7 +441767,7 @@ This page describes an iterative Ptychography reconstruction algorithm, termed s
     sc:url "http://www.sorfs.org/" .
 
 <https://bio.tools/sPyNNaker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3068,
@@ -418139,7 +441787,7 @@ This page describes an iterative Ptychography reconstruction algorithm, termed s
     sc:url "https://github.com/SpiNNakerManchester/sPyNNaker" .
 
 <https://bio.tools/sRNA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_0780,
         edam:topic_3512 ;
@@ -418154,7 +441802,7 @@ This page describes an iterative Ptychography reconstruction algorithm, termed s
     sc:url "https://github.com/gyulap/sRNA_content_of_FPLC_fractions" .
 
 <https://bio.tools/sRNA_plant_portal> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0780 ;
     sc:description "The plant sRNA portal is a a database of annotated sRNAs integrating the miRPursuit pipeline to identify, predict and annotate plant small RNAs (sRNA)." ;
@@ -418167,7 +441815,7 @@ This page describes an iterative Ptychography reconstruction algorithm, termed s
     sc:url "https://srna-portal.biodata.pt/" .
 
 <https://bio.tools/sRNAanno> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_0780,
         edam:topic_3168 ;
@@ -418180,7 +441828,7 @@ This page describes an iterative Ptychography reconstruction algorithm, termed s
     sc:url "http://www.plantsrnas.org/" .
 
 <https://bio.tools/sRNAbench> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_3170,
@@ -418203,7 +441851,7 @@ This page describes an iterative Ptychography reconstruction algorithm, termed s
     biotools:primaryContact "Michael Hackenberg" .
 
 <https://bio.tools/sRNAtoolbox> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0659,
@@ -418227,7 +441875,7 @@ This page describes an iterative Ptychography reconstruction algorithm, termed s
     biotools:primaryContact "Michael Hackenberg" .
 
 <https://bio.tools/sRNAtools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0659,
         edam:topic_0780,
@@ -418245,7 +441893,7 @@ sRNAtools at this site is under construction ... Coming soon!""" ;
     sc:url "https://bioinformatics.caf.ac.cn/sRNAtools/" .
 
 <https://bio.tools/sa-conf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0130,
@@ -418262,7 +441910,7 @@ sRNAtools at this site is under construction ... Coming soon!""" ;
         "Leslie Regad" .
 
 <https://bio.tools/sa-mot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -418287,7 +441935,7 @@ sRNAtools at this site is under construction ... Coming soon!""" ;
         "Leslie Regad" .
 
 <https://bio.tools/sa-search> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0154,
@@ -418308,7 +441956,7 @@ sRNAtools at this site is under construction ... Coming soon!""" ;
     biotools:primaryContact "Frédéric Guyon" .
 
 <https://bio.tools/sa-ssr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0160,
@@ -418323,7 +441971,7 @@ sRNAtools at this site is under construction ... Coming soon!""" ;
     sc:url "http://github.com/ridgelab/SA-SSR" .
 
 <https://bio.tools/saafec-seq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0130,
         edam:topic_0154,
@@ -418345,7 +441993,7 @@ SAAFEC-SEQ uses the PsePSSM algorithm to predict the stability changes upon a si
     sc:url "http://compbio.clemson.edu/SAAFEC-SEQ/index.php" .
 
 <https://bio.tools/saambe> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0199,
@@ -418361,7 +442009,7 @@ SAAFEC-SEQ uses the PsePSSM algorithm to predict the stability changes upon a si
     sc:url "http://compbio.clemson.edu/saambe_webserver/" .
 
 <https://bio.tools/saambe-3d> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0199,
         edam:topic_0749,
@@ -418383,7 +442031,7 @@ User need to download the script and two models. Regression.model is the model f
     sc:url "https://github.com/delphi001/SAAMBE-3D" .
 
 <https://bio.tools/saambe-seq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0130,
         edam:topic_0199,
@@ -418399,7 +442047,7 @@ User need to download the script and two models. Regression.model is the model f
     sc:url "http://compbio.clemson.edu/saambe_webserver/indexSEQ.php#started" .
 
 <https://bio.tools/saap-bs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0654,
@@ -418416,14 +442064,14 @@ User need to download the script and two models. Regression.model is the model f
 
 <https://bio.tools/sabbac> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1470" ;
-            sc:name "C-alpha trace" ;
-            sc:sameAs "http://edamontology.org/data_1470" ] ;
+            sc:additionalType "http://edamontology.org/data_1470" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "C-alpha trace" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein structure" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2275 ;
     sc:citation "pubmed:16844979" ;
@@ -418437,8 +442085,34 @@ User need to download the script and two models. Regression.model is the model f
     sc:url "https://mobyle.rpbs.univ-paris-diderot.fr/cgi-bin/portal.py#forms::SABBAC" ;
     biotools:primaryContact <https://orcid.org/0000-0003-1033-9895> .
 
+<https://bio.tools/sabdab> a sc:SoftwareApplication ;
+    bsc:output [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1463" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Small molecule structure" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0077,
+        edam:topic_0154,
+        edam:topic_2830,
+        edam:topic_3374,
+        edam:topic_3400 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAB1050>,
+        "pmcid:PMC8728266",
+        "pubmed:34986602" ;
+    sc:description "SAbDab is a database containing all the antibody structures available in the PDB, annotated and presented in a consistent fashion." ;
+    sc:featureList edam:operation_2421,
+        edam:operation_2422,
+        edam:operation_3431 ;
+    sc:isAccessibleForFree true ;
+    sc:name "SAbDab" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://opig.stats.ox.ac.uk/webapps/newsabdab/" .
+
 <https://bio.tools/saber> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0194,
         edam:topic_2269,
@@ -418453,7 +442127,7 @@ User need to download the script and two models. Regression.model is the model f
     sc:url "http://med.stanford.edu/tanglab/software/saber.html" .
 
 <https://bio.tools/sabic> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0130,
         edam:topic_1775,
@@ -418468,30 +442142,27 @@ User need to download the script and two models. Regression.model is the model f
 
 <https://bio.tools/sabio-rk> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1011" ;
-            sc:name "EC number" ;
-            sc:sameAs "http://edamontology.org/data_1011" ],
+            sc:additionalType "http://edamontology.org/data_1011" ;
+            sc:name "EC number" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2648" ;
-            sc:name "Reaction kinetics ID (SABIO-RK)" ;
-            sc:sameAs "http://edamontology.org/data_2648" ],
+            sc:additionalType "http://edamontology.org/data_2309" ;
+            sc:name "Reaction ID (SABIO-RK)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2309" ;
-            sc:name "Reaction ID (SABIO-RK)" ;
-            sc:sameAs "http://edamontology.org/data_2309" ] ;
+            sc:additionalType "http://edamontology.org/data_2648" ;
+            sc:name "Reaction kinetics ID (SABIO-RK)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2978" ;
-            sc:name "Reaction data" ;
-            sc:sameAs "http://edamontology.org/data_2978" ],
+            sc:additionalType "http://edamontology.org/data_2978" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Reaction data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2024" ;
-            sc:name "Enzyme kinetics data" ;
-            sc:sameAs "http://edamontology.org/data_2024" ],
+            sc:additionalType "http://edamontology.org/data_2024" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Enzyme kinetics data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2093" ;
-            sc:name "Data reference" ;
-            sc:sameAs "http://edamontology.org/data_2093" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2093" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Data reference" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0219,
         edam:topic_0602,
@@ -418514,7 +442185,7 @@ User need to download the script and two models. Regression.model is the model f
     sc:url "http://sabiork.h-its.org/" .
 
 <https://bio.tools/sabio-rk_ws> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_2259 ;
@@ -418530,7 +442201,7 @@ User need to download the script and two models. Regression.model is the model f
     sc:url "http://sabiork.h-its.org/layouts/content/docuRESTfulWeb/manual.gsp" .
 
 <https://bio.tools/sable> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0736,
@@ -418547,7 +442218,7 @@ User need to download the script and two models. Regression.model is the model f
     sc:url "http://sable.cchmc.org/" .
 
 <https://bio.tools/sabre> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3572 ;
@@ -418562,18 +442233,18 @@ User need to download the script and two models. Regression.model is the model f
 
 <https://bio.tools/sabund> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:citation <https://doi.org/10.1093/nar/gkw343>,
@@ -418590,14 +442261,13 @@ User need to download the script and two models. Regression.model is the model f
 
 <https://bio.tools/sachem> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1463" ;
-            sc:name "Small molecule structure" ;
-            sc:sameAs "http://edamontology.org/data_1463" ] ;
+            sc:additionalType "http://edamontology.org/data_1463" ;
+            sc:encodingFormat "http://edamontology.org/format_1196" ;
+            sc:name "Small molecule structure" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2080" ;
-            sc:name "Database search results" ;
-            sc:sameAs "http://edamontology.org/data_2080" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2080" ;
+            sc:name "Database search results" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Plug-in" ;
     sc:applicationSubCategory edam:topic_2258,
@@ -418617,7 +442287,7 @@ User need to download the script and two models. Regression.model is the model f
     biotools:primaryContact <https://orcid.org/0000-0002-7038-544X> .
 
 <https://bio.tools/sacsann> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0654,
         edam:topic_3168,
@@ -418636,8 +442306,27 @@ The 'Sequence-based Annotator of Chromosomal Compartments by Stacked Artificial
     sc:name "SACSANN" ;
     sc:url "https://github.com/BlanchetteLab/SACSANN" .
 
+<https://bio.tools/sadeepcry> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0078,
+        edam:topic_2828,
+        edam:topic_3678 ;
+    sc:citation <https://doi.org/10.1093/BIB/BBAC352>,
+        "pubmed:36037090" ;
+    sc:description "A deep learning framework for protein crystallization propensity prediction using self-attention and auto-encoder networks." ;
+    sc:featureList edam:operation_0477,
+        edam:operation_3927 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "SADeepcry" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/zhc940702/SADeepcry" .
+
 <https://bio.tools/sadic> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0123,
         edam:topic_2814,
@@ -418653,7 +442342,7 @@ The 'Sequence-based Annotator of Chromosomal Compartments by Stacked Artificial
     sc:url "http://www.sbl.unisi.it/prococoa/" .
 
 <https://bio.tools/sadlsa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0130,
         edam:topic_0160,
@@ -418677,7 +442366,7 @@ From evolutionary interference, function annotation to structural prediction, pr
     sc:url "http://pwp.gatech.edu/cssb/sadlsa/" .
 
 <https://bio.tools/sadmama> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0203,
@@ -418695,7 +442384,7 @@ From evolutionary interference, function annotation to structural prediction, pr
     sc:url "http://www.maths.usyd.edu.au/u/uri/SADMAMA/" .
 
 <https://bio.tools/safa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_3361 ;
@@ -418710,16 +442399,45 @@ From evolutionary interference, function annotation to structural prediction, pr
     sc:softwareVersion "1.1" ;
     sc:url "https://simtk.org/home/safa" .
 
+<https://bio.tools/safari> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3603" ;
+            sc:name "Image" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0634,
+        edam:topic_3384,
+        edam:topic_3444,
+        edam:topic_3452,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1186/S12880-022-00849-8>,
+        "pmcid:PMC9308199",
+        "pubmed:35869424" ;
+    sc:description "SAFARI (Shape Analysis For AI-Segmented Images) provides functionality for image processing and shape analysis. In the context of reconstructed medical images generated by deep learning-based methods and produced from different modalities such as X-ray, Computational Tomography (CT), Magnetic Resonance Imaging (MRI), and pathology imaging, SAFARI offers tools to segment regions of interest and extract quantitative shape descriptors for applications in signal processing, statistical analysis and modeling, and machine learning." ;
+    sc:featureList edam:operation_3219,
+        edam:operation_3443,
+        edam:operation_3937 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "SAFARI" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://cran.r-project.org/web/packages/SAFARI/SAFARI.pdf> ;
+    sc:url "https://lce.biohpc.swmed.edu/safari/" .
+
 <https://bio.tools/safe> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2872" ;
-            sc:name "ID list" ;
-            sc:sameAs "http://edamontology.org/data_2872" ] ;
+            sc:additionalType "http://edamontology.org/data_2872" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "ID list" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1270" ;
-            sc:name "Feature table" ;
-            sc:sameAs "http://edamontology.org/data_1270" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1270" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Feature table" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2269 ;
@@ -418737,7 +442455,7 @@ From evolutionary interference, function annotation to structural prediction, pr
     biotools:primaryContact "William T. Barry" .
 
 <https://bio.tools/safeec> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0130,
@@ -418753,7 +442471,7 @@ From evolutionary interference, function annotation to structural prediction, pr
     sc:url "http://compbio.clemson.edu/SAAFEC/" .
 
 <https://bio.tools/safire_arrayscan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -418772,7 +442490,7 @@ From evolutionary interference, function annotation to structural prediction, pr
     biotools:primaryContact "Abigail Reens" .
 
 <https://bio.tools/sagat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3518 ;
@@ -418786,7 +442504,7 @@ From evolutionary interference, function annotation to structural prediction, pr
     sc:url "https://simtk.org/home/sagat" .
 
 <https://bio.tools/sage> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0622,
@@ -418811,7 +442529,7 @@ SAGE is a comprehensive repertoire of genome and exome information from South As
     sc:url "http://clingen.igib.res.in/SAGE" .
 
 <https://bio.tools/sagemap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0203,
@@ -418834,7 +442552,7 @@ SAGE is a comprehensive repertoire of genome and exome information from South As
     biotools:primaryContact "Alex E. Lash" .
 
 <https://bio.tools/sagenet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0203,
@@ -418854,7 +442572,7 @@ SAGE is a comprehensive repertoire of genome and exome information from South As
     sc:url "http://www.sagenet.org/" .
 
 <https://bio.tools/sagenhaft> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203 ;
@@ -418873,7 +442591,7 @@ SAGE is a comprehensive repertoire of genome and exome information from South As
     biotools:primaryContact "Tim Beissbarth" .
 
 <https://bio.tools/sager> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0621,
         edam:topic_3170,
@@ -418894,7 +442612,7 @@ L""" ;
     sc:url "http://sampgr.org.cn" .
 
 <https://bio.tools/sagexplore> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0219,
@@ -418911,7 +442629,7 @@ L""" ;
     sc:url "http://melolab.org/sagexplore/home.php" .
 
 <https://bio.tools/sagpar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0602,
@@ -418928,7 +442646,7 @@ L""" ;
     sc:url "http://www.isical.ac.in/~rajat/" .
 
 <https://bio.tools/sagx> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203 ;
@@ -418946,7 +442664,7 @@ L""" ;
     biotools:primaryContact "Per Broberg" .
 
 <https://bio.tools/sahg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -418968,8 +442686,31 @@ L""" ;
     sc:url "http://bird.cbrc.jp/sahg" ;
     biotools:primaryContact "Chie Motono" .
 
+<https://bio.tools/saibr> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Plug-in" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0621,
+        edam:topic_3315,
+        edam:topic_3382,
+        edam:topic_3934 ;
+    sc:citation <https://doi.org/10.1242/dev.200545>,
+        "pubmed:35713287" ;
+    sc:description "A simple, platform-independent method for spectral autofluorescence correction." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_3659,
+        edam:operation_3799 ;
+    sc:isAccessibleForFree true ;
+    sc:license "CC-BY-4.0" ;
+    sc:name "SAIBR" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://github.com/goehringlab/saibr_fiji_plugin/blob/master/saibr_user_guide.pdf> ;
+    sc:url "https://github.com/goehringlab/saibr_fiji_plugin" .
+
 <https://bio.tools/saige> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description """SAIGE is an R package with Scalable and Accurate Implementation of Generalized mixed model. It accounts for sample relatedness and is feasible for genetic association tests in large cohorts and biobanks (N > 400,000).
 
 SAIGE performs single-variant association tests for binary traits and quantitative traits. For binary traits, SAIGE uses the saddlepoint approximation (SPA)(mhof, J. P. , 1961; Kuonen, D. 1999; Dey, R. et.al 2017) to account for case-control imbalance.
@@ -418980,7 +442721,7 @@ SAIGE-GENE (implemented in the SAIGE R package) performs gene- or region-based a
     sc:url "https://github.com/weizhouUMICH/SAIGE" .
 
 <https://bio.tools/saige-brush> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3316,
@@ -418996,7 +442737,7 @@ SAIGE-GENE (implemented in the SAIGE R package) performs gene- or region-based a
     biotools:primaryContact "Nicholas Rafaels" .
 
 <https://bio.tools/saigegds> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2885,
         edam:topic_3337,
@@ -419014,7 +442755,7 @@ Scalable implementation of generalized mixed models with highly optimized C++ im
     sc:url "https://bioconductor.org/packages/SAIGEgds" .
 
 <https://bio.tools/sailer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0108,
@@ -419032,7 +442773,7 @@ Scalable implementation of generalized mixed models with highly optimized C++ im
     sc:url "https://github.com/uci-cbcl/SAILER" .
 
 <https://bio.tools/sailfish> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_3168,
@@ -419048,7 +442789,7 @@ Scalable implementation of generalized mixed models with highly optimized C++ im
     sc:url "http://www.cs.cmu.edu/~ckingsf/software/sailfish/" .
 
 <https://bio.tools/sailfish-cir> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0659,
@@ -419065,7 +442806,7 @@ Scalable implementation of generalized mixed models with highly optimized C++ im
     biotools:primaryContact "Musheng Li" .
 
 <https://bio.tools/saint> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3520 ;
@@ -419080,7 +442821,7 @@ Scalable implementation of generalized mixed models with highly optimized C++ im
     sc:url "http://saint-apms.sourceforge.net/Main.html" .
 
 <https://bio.tools/saintprotein> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0593,
         edam:topic_2828,
@@ -419096,7 +442837,7 @@ Scalable implementation of generalized mixed models with highly optimized C++ im
     sc:url "https://github.com/SAINTProtein/SAINT" .
 
 <https://bio.tools/sakeima> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3174,
         edam:topic_3697 ;
@@ -419114,7 +442855,7 @@ SAKEIMA is a sampling-based algorithm for computing an approximation of the most
     sc:url "https://github.com/VandinLab/SAKEIMA" .
 
 <https://bio.tools/salad> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0121,
@@ -419133,7 +442874,7 @@ SAKEIMA is a sampling-based algorithm for computing an approximation of the most
     biotools:primaryContact "M. Mihara" .
 
 <https://bio.tools/salami> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -419154,7 +442895,7 @@ SAKEIMA is a sampling-based algorithm for computing an approximation of the most
     biotools:primaryContact "T. Margraf" .
 
 <https://bio.tools/salign> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0128,
         edam:topic_0621,
@@ -419176,12 +442917,25 @@ To reproduce the results reported in SAlign paper, use "Reproduce_Paper_Results"
     sc:name "SAlign" ;
     sc:url "https://github.com/cbrl-nuces/SAlign" .
 
+<https://bio.tools/salivadb> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:description "SalivaDB is a comprehensive and manually-curated database for salivary biomarkers found in Homo sapiens. It contains 15,821 entries for 7729 unique salivary biomarkers consisting of proteins, metabolites, microbes, miRNA, and genes." ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "salivadb" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/salivadb/> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/salivadb/" .
+
 <https://bio.tools/salmobase> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2093" ;
-            sc:name "Data reference" ;
-            sc:sameAs "http://edamontology.org/data_2093" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2093" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data reference" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0622 ;
     sc:citation <https://doi.org/10.1038/nature17164> ;
@@ -419198,7 +442952,7 @@ To reproduce the results reported in SAlign paper, use "Reproduce_Paper_Results"
     biotools:primaryContact "Jeevan karloss" .
 
 <https://bio.tools/salmobase2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:author "Amine Namouchi" ;
     sc:citation <https://doi.org/10.7490/f1000research.1117096.1> ;
     sc:description "SalmoBase 2.0: An integrative genomic data resource for salmonids" ;
@@ -419209,18 +442963,18 @@ To reproduce the results reported in SAlign paper, use "Reproduce_Paper_Results"
 
 <https://bio.tools/salmon> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3496" ;
-            sc:name "RNA sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_3496" ],
+            sc:additionalType "http://edamontology.org/data_3496" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "RNA sequence (raw)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2093" ;
-            sc:name "Data reference" ;
-            sc:sameAs "http://edamontology.org/data_2093" ] ;
+            sc:additionalType "http://edamontology.org/data_2093" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Data reference" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3170,
@@ -419240,22 +442994,22 @@ To reproduce the results reported in SAlign paper, use "Reproduce_Paper_Results"
 
 <https://bio.tools/salmonella_crispr_typing> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ] ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Nucleic acid sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2070" ;
-            sc:name "Sequence motif (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_2070" ],
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Nucleic acid sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ],
+            sc:additionalType "http://edamontology.org/data_2012" ;
+            sc:encodingFormat "http://edamontology.org/format_3003" ;
+            sc:name "Sequence coordinates" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2012" ;
-            sc:name "Sequence coordinates" ;
-            sc:sameAs "http://edamontology.org/data_2012" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2070" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence motif (nucleic acid)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3301 ;
@@ -419278,7 +443032,7 @@ To reproduce the results reported in SAlign paper, use "Reproduce_Paper_Results"
         "Laetitia Fabre" .
 
 <https://bio.tools/salt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_0736,
@@ -419293,7 +443047,7 @@ To reproduce the results reported in SAlign paper, use "Reproduce_Paper_Results"
     sc:url "http://sourceforge.net/projects/salt1/" .
 
 <https://bio.tools/salt_snp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_2885,
@@ -419316,7 +443070,7 @@ To reproduce the results reported in SAlign paper, use "Reproduce_Paper_Results"
     sc:url "https://github.com/weiquan/SALT" .
 
 <https://bio.tools/sam> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_3053,
         edam:topic_3473,
@@ -419332,7 +443086,7 @@ To reproduce the results reported in SAlign paper, use "Reproduce_Paper_Results"
     sc:url "http://statweb.stanford.edu/~tibs/SAM/index.html" .
 
 <https://bio.tools/sam-t08> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -419354,18 +443108,18 @@ To reproduce the results reported in SAlign paper, use "Reproduce_Paper_Results"
 
 <https://bio.tools/sam2tsv> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1050" ;
-            sc:name "File name" ;
-            sc:sameAs "http://edamontology.org/data_1050" ],
+            sc:additionalType "http://edamontology.org/data_1050" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "File name" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1050" ;
-            sc:name "File name" ;
-            sc:sameAs "http://edamontology.org/data_1050" ] ;
+            sc:additionalType "http://edamontology.org/data_1050" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "File name" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1050" ;
-            sc:name "File name" ;
-            sc:sameAs "http://edamontology.org/data_1050" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1050" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "File name" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:author "Pierre Lindenbaum" ;
@@ -419386,24 +443140,46 @@ To reproduce the results reported in SAlign paper, use "Reproduce_Paper_Results"
     sc:url "https://github.com/lindenb/jvarkit/wiki/Sam2Tsv" ;
     biotools:primaryContact "Pierre Lindenbaum" .
 
+<https://bio.tools/sam_interaction_predictor> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0128,
+        edam:topic_0154,
+        edam:topic_0821,
+        edam:topic_3334,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1016/J.COMPBIOLCHEM.2022.107662>,
+        "pubmed:35288360" ;
+    sc:description "A computational prediction of S-Adenosyl methionine (SAM) interacting proteins and their interaction sites through primary structures." ;
+    sc:featureList edam:operation_0253,
+        edam:operation_2492,
+        edam:operation_3092 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "SIP" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://sites.google.com/view/wajidarshad/software" .
+
 <https://bio.tools/sam_to_bam> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ],
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
+            sc:name "Sequence trace" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ],
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
+            sc:name "Sequence trace" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ] ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Sequence trace" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btp352>,
@@ -419421,7 +443197,7 @@ To reproduce the results reported in SAlign paper, use "Reproduce_Paper_Results"
     biotools:primaryContact "Galaxy Support Team" .
 
 <https://bio.tools/sam_wga> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
@@ -419441,8 +443217,29 @@ To reproduce the results reported in SAlign paper, use "Reproduce_Paper_Results"
     sc:url "http://www.bcgsc.ca/platform/bioinfo/software/sam" ;
     biotools:primaryContact "SAM Support" .
 
+<https://bio.tools/samba> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_0196,
+        edam:topic_3168 ;
+    sc:citation <https://doi.org/10.1371/journal.pcbi.1009860>,
+        "pmcid:PMC8849508",
+        "pubmed:35120119" ;
+    sc:description "The SAMBA tool uses long reads to improve the contiguity of genome assemblies." ;
+    sc:featureList edam:operation_0525,
+        edam:operation_3216,
+        edam:operation_3731 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "SAMBA" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/alekseyzimin/masurca" .
+
 <https://bio.tools/sambamba> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654,
@@ -419459,7 +443256,7 @@ To reproduce the results reported in SAlign paper, use "Reproduce_Paper_Results"
     sc:url "http://www.open-bio.org/wiki/Sambamba" .
 
 <https://bio.tools/samblaster> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0654,
@@ -419474,7 +443271,7 @@ To reproduce the results reported in SAlign paper, use "Reproduce_Paper_Results"
     sc:url "https://github.com/GregoryFaust/samblaster" .
 
 <https://bio.tools/samcc-turbo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0736,
         edam:topic_3315,
@@ -419497,7 +443294,7 @@ Software for automatic detection and measurement of coiled coils in PDB structur
     sc:url "https://lbs.cent.uw.edu.pl/samcc_turbo" .
 
 <https://bio.tools/samcluster> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0623,
@@ -419513,7 +443310,7 @@ Software for automatic detection and measurement of coiled coils in PDB structur
     sc:url "http://www.biosun.org.cn/SamCluster/index.htm" .
 
 <https://bio.tools/same-ecos> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3444,
@@ -419533,7 +443330,7 @@ Software for automatic detection and measurement of coiled coils in PDB structur
     sc:url "https://github.com/hanwencat/SAME-ECOS" .
 
 <https://bio.tools/same-same> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
         edam:topic_3170,
@@ -419552,7 +443349,7 @@ Multiple Test Correction Method""" ;
     sc:url "https://peptidewitch.shinyapps.io/samesame" .
 
 <https://bio.tools/samexplorer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0204,
@@ -419580,14 +443377,14 @@ Multiple Test Correction Method""" ;
 
 <https://bio.tools/samjavascript> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1050" ;
-            sc:name "File name" ;
-            sc:sameAs "http://edamontology.org/data_1050" ] ;
+            sc:additionalType "http://edamontology.org/data_1050" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "File name" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1050" ;
-            sc:name "File name" ;
-            sc:sameAs "http://edamontology.org/data_1050" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1050" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "File name" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:author "Pierre Lindenbaum" ;
@@ -419609,7 +443406,7 @@ Multiple Test Correction Method""" ;
     biotools:primaryContact "Pierre Lindenbaum" .
 
 <https://bio.tools/sammate> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3170 ;
@@ -419626,7 +443423,7 @@ Multiple Test Correction Method""" ;
     biotools:primaryContact "Dongxiao Zhu" .
 
 <https://bio.tools/sammba-mri> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0769,
         edam:topic_3379,
@@ -419643,7 +443440,7 @@ Sammba-MRI:Small mammals NeuroImaging in Python — Multimodal Imaging of Neurod
     sc:url "http://sammba-mri.github.io" .
 
 <https://bio.tools/samnetweb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0128,
@@ -419662,8 +443459,29 @@ Sammba-MRI:Small mammals NeuroImaging in Python — Multimodal Imaging of Neurod
     sc:softwareHelp <http://fraenkel-nsf.csbi.mit.edu/samnetweb/quickstart.html> ;
     sc:url "http://fraenkel-nsf.csbi.mit.edu/samnetweb/" .
 
+<https://bio.tools/samp-pfpdeep> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0634,
+        edam:topic_2275,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1093/BIB/BBAB487>,
+        "pubmed:34849586" ;
+    sc:description "Improving accuracy of short antimicrobial peptides prediction using three different sequence encodings and deep neural networks." ;
+    sc:featureList edam:operation_0478,
+        edam:operation_3927,
+        edam:operation_4009 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "sAMP-PFPDeep" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/WaqarHusain/sAMP-PFPDeep" .
+
 <https://bio.tools/sampbias> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_2269,
         edam:topic_3050,
@@ -419678,7 +443496,7 @@ Sampbias is a method and tool to 1) visualize the distribution of occurrence rec
     sc:url "https://github.com/azizka/sampbias" .
 
 <https://bio.tools/sampdi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_3306,
@@ -419696,14 +443514,14 @@ Sampbias is a method and tool to 1) visualize the distribution of occurrence rec
 
 <https://bio.tools/sampdi-3d> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1464" ;
-            sc:name "DNA structure" ;
-            sc:sameAs "http://edamontology.org/data_1464" ],
+            sc:additionalType "http://edamontology.org/data_1464" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "DNA structure" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein structure" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0154,
@@ -419726,7 +443544,7 @@ Sampbias is a method and tool to 1) visualize the distribution of occurrence rec
     sc:url "http://compbio.clemson.edu/SAMPDI-3D/" .
 
 <https://bio.tools/sampei> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -419750,7 +443568,7 @@ Recent studies have revealed diverse amino acid, post-translational and non-cano
     sc:url "https://github.com/FenyoLab/SAMPEI" .
 
 <https://bio.tools/sample> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0654,
@@ -419765,7 +443583,7 @@ Recent studies have revealed diverse amino acid, post-translational and non-cano
     sc:url "http://dna.leeds.ac.uk/sample/" .
 
 <https://bio.tools/sampleclassifier> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3170,
@@ -419785,7 +443603,7 @@ Recent studies have revealed diverse amino acid, post-translational and non-cano
     biotools:primaryContact "Khadija El Amrani" .
 
 <https://bio.tools/sampledrift> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0593,
         edam:topic_3172,
@@ -419802,7 +443620,7 @@ Recent studies have revealed diverse amino acid, post-translational and non-cano
     biotools:primaryContact "Carl Brunius" .
 
 <https://bio.tools/sampleqc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2229,
@@ -419821,7 +443639,7 @@ Recent studies have revealed diverse amino acid, post-translational and non-cano
     sc:url "https://github.com/wmacnair/SampleQC" .
 
 <https://bio.tools/sampleseq2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3053,
         edam:topic_3168,
@@ -419837,7 +443655,7 @@ Recent studies have revealed diverse amino acid, post-translational and non-cano
     sc:url "http://biostat.mc.vanderbilt.edu/wiki/Main/SampleSeq" .
 
 <https://bio.tools/sampletrees> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_2885,
@@ -419859,7 +443677,7 @@ Recent studies have revealed diverse amino acid, post-translational and non-cano
     biotools:primaryContact "Kelly Burkett" .
 
 <https://bio.tools/samplot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3382,
         edam:topic_3474,
@@ -419880,7 +443698,7 @@ samplot is a command line tool for rapid, multi-sample structural variant visual
     sc:url "https://github.com/ryanlayer/samplot" .
 
 <https://bio.tools/sampn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0209,
         edam:topic_2258,
@@ -419896,7 +443714,7 @@ samplot is a command line tool for rapid, multi-sample structural variant visual
     sc:url "https://github.com/tbwxmu/SAMPN" .
 
 <https://bio.tools/samql> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0102,
@@ -419913,8 +443731,29 @@ SQL-like query language for the SAM/BAM file format.""" ;
     sc:name "SamQL" ;
     sc:url "https://github.com/maragkakislab/samql/" .
 
+<https://bio.tools/sams> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0089,
+        edam:topic_0625,
+        edam:topic_0634,
+        edam:topic_3379,
+        edam:topic_3577 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAC329>,
+        "pmcid:PMC9252818",
+        "pubmed:35524573" ;
+    sc:description "SAMS is a database and phenotyping tool for precision medicine. Physicians can enter clinical signs from the Human Phenotype Ontology as well complete diagnoses, and patients can be involved by sharing the symptoms they encounter." ;
+    sc:featureList edam:operation_2421,
+        edam:operation_3559 ;
+    sc:isAccessibleForFree true ;
+    sc:name "SAMS" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://www.genecascade.org/SAMS/" .
+
 <https://bio.tools/samsa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_3174,
         edam:topic_3308 ;
@@ -419928,7 +443767,7 @@ SQL-like query language for the SAM/BAM file format.""" ;
     sc:url "https://github.com/transcript/SAMSA" .
 
 <https://bio.tools/samsa2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3174,
@@ -419950,7 +443789,7 @@ It is a rapid and efficient metatranscriptome pipeline for analyzing large RNA-s
     biotools:primaryContact "Danielle G. LemayEmail author" .
 
 <https://bio.tools/samscope> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3169,
@@ -419967,7 +443806,7 @@ It is a rapid and efficient metatranscriptome pipeline for analyzing large RNA-s
     biotools:primaryContact "Admin" .
 
 <https://bio.tools/samselect> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0749 ;
     sc:citation <https://doi.org/10.1186/s12859-018-2242-y> ;
@@ -419982,7 +443821,7 @@ It is a rapid and efficient metatranscriptome pipeline for analyzing large RNA-s
     biotools:primaryContact "Hongwei Huo" .
 
 <https://bio.tools/samspectral> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2229 ;
@@ -420002,7 +443841,7 @@ It is a rapid and efficient metatranscriptome pipeline for analyzing large RNA-s
     biotools:primaryContact <http://orcid.org/0000-0001-5902-6238> .
 
 <https://bio.tools/samstat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2269 ;
     sc:citation "pubmed:21088025" ;
@@ -420016,7 +443855,7 @@ It is a rapid and efficient metatranscriptome pipeline for analyzing large RNA-s
     biotools:primaryContact "Timo Lassmann" .
 
 <https://bio.tools/samsvm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654,
@@ -420031,7 +443870,7 @@ It is a rapid and efficient metatranscriptome pipeline for analyzing large RNA-s
     sc:url "http://sourceforge.net/projects/samsvm/" .
 
 <https://bio.tools/samt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3050,
@@ -420051,14 +443890,14 @@ SAMT is an R package that contains different functions to manipulate and analyse
 
 <https://bio.tools/samtools> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ] ;
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
+            sc:name "Sequence trace" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
+            sc:name "Sequence trace" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Suite" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -420066,10 +443905,13 @@ SAMT is an R package that contains different functions to manipulate and analyse
         edam:topic_3168,
         edam:topic_3325 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btp352>,
+        <https://doi.org/10.1093/bioinformatics/btr509>,
         <https://doi.org/10.1093/gigascience/giab008>,
         "pmcid:PMC2723002",
+        "pmcid:PMC3198575",
         "pmcid:PMC7931819",
         "pubmed:19505943",
+        "pubmed:21903627",
         "pubmed:33590861" ;
     sc:contributor "Richard Durbin" ;
     sc:description "SAMtools and BCFtools are widely used programs for processing and analysing high-throughput sequencing data. They include tools for file format conversion and manipulation, sorting, querying, statistics, variant calling, and effect analysis amongst other methods." ;
@@ -420098,6 +443940,9 @@ SAMT is an R package that contains different functions to manipulate and analyse
         "1.13",
         "1.14",
         "1.15",
+        "1.15.1",
+        "1.16",
+        "1.16.1",
         "1.2",
         "1.3",
         "1.3.1",
@@ -420113,14 +443958,14 @@ SAMT is an R package that contains different functions to manipulate and analyse
 
 <https://bio.tools/samtools_filter> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_3003" ;
+            sc:name "Annotation track" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3168 ;
@@ -420139,14 +443984,14 @@ SAMT is an R package that contains different functions to manipulate and analyse
 
 <https://bio.tools/samtools_flagstat> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ] ;
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Sequence trace" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3168 ;
@@ -420166,14 +444011,14 @@ SAMT is an R package that contains different functions to manipulate and analyse
 
 <https://bio.tools/samtools_idxstats> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ] ;
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Sequence trace" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3168 ;
@@ -420193,18 +444038,18 @@ SAMT is an R package that contains different functions to manipulate and analyse
 
 <https://bio.tools/samtools_slice_bam> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ],
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Sequence trace" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ] ;
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_3003" ;
+            sc:name "Annotation track" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Sequence trace" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btp352>,
@@ -420223,14 +444068,14 @@ SAMT is an R package that contains different functions to manipulate and analyse
 
 <https://bio.tools/samtools_sort> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ] ;
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Sequence trace" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Sequence trace" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3071,
         edam:topic_3168 ;
@@ -420249,7 +444094,7 @@ SAMT is an R package that contains different functions to manipulate and analyse
     biotools:primaryContact "Galaxy Support Team" .
 
 <https://bio.tools/sana> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -420263,7 +444108,7 @@ SAMT is an R package that contains different functions to manipulate and analyse
     sc:url "http://doc.aporc.org/wiki/SANA" .
 
 <https://bio.tools/sana-aligner> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0602,
@@ -420280,7 +444125,7 @@ SAMT is an R package that contains different functions to manipulate and analyse
     biotools:primaryContact "Wayne B. Hayes" .
 
 <https://bio.tools/sancdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0780,
@@ -420300,7 +444145,7 @@ SAMT is an R package that contains different functions to manipulate and analyse
     biotools:primaryContact <https://orcid.org/0000-0001-6861-7849> .
 
 <https://bio.tools/sandpuma> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0736,
@@ -420318,7 +444163,7 @@ SAMT is an R package that contains different functions to manipulate and analyse
         "Marnix H. Medema" .
 
 <https://bio.tools/sangeranalyser> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0080,
         edam:topic_3168 ;
@@ -420335,7 +444180,7 @@ This package builds on sangerseqR to allow users to create contigs from collecti
     sc:url "https://bioconductor.org/packages/sangeranalyseR" .
 
 <https://bio.tools/sangerseqr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3168 ;
@@ -420355,7 +444200,7 @@ This package builds on sangerseqR to allow users to create contigs from collecti
     biotools:primaryContact <http://orcid.org/0000-0003-1190-6302> .
 
 <https://bio.tools/sango> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3315,
         edam:topic_3365,
         edam:topic_3474 ;
@@ -420370,7 +444215,7 @@ This package builds on sangerseqR to allow users to create contigs from collecti
     sc:url "https://github.com/HSE-LAMBDA/sango" .
 
 <https://bio.tools/sann> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0081,
@@ -420387,7 +444232,7 @@ This package builds on sangerseqR to allow users to create contigs from collecti
     sc:url "http://lee.kias.re.kr/~newton/sann/" .
 
 <https://bio.tools/sanpolya> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0203,
         edam:topic_3474,
@@ -420406,22 +444251,22 @@ Polyadenylation plays a regulatory role in transcription. The recognition of pol
 
 <https://bio.tools/sans> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1234" ;
-            sc:name "Sequence set (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1234" ],
+            sc:additionalType "http://edamontology.org/data_1234" ;
+            sc:encodingFormat "http://edamontology.org/format_1919" ;
+            sc:name "Sequence set (nucleic acid)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1234" ;
-            sc:name "Sequence set (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1234" ] ;
+            sc:additionalType "http://edamontology.org/data_1234" ;
+            sc:encodingFormat "http://edamontology.org/format_1919" ;
+            sc:name "Sequence set (nucleic acid)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2523" ;
-            sc:name "Phylogenetic data" ;
-            sc:sameAs "http://edamontology.org/data_2523" ],
+            sc:additionalType "http://edamontology.org/data_2523" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Phylogenetic data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3272" ;
-            sc:name "Species tree" ;
-            sc:sameAs "http://edamontology.org/data_3272" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3272" ;
+            sc:encodingFormat "http://edamontology.org/format_1910" ;
+            sc:name "Species tree" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0194,
         edam:topic_3293 ;
@@ -420447,7 +444292,7 @@ C++.""" ;
     sc:url "https://gitlab.ub.uni-bielefeld.de/gi/sans" .
 
 <https://bio.tools/sansparallel> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0121,
@@ -420463,7 +444308,7 @@ C++.""" ;
     sc:url "http://ekhidna2.biocenter.helsinki.fi/cgi-bin/sans/sans.cgi" .
 
 <https://bio.tools/santa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0602,
@@ -420484,7 +444329,7 @@ C++.""" ;
     biotools:primaryContact "Alex J. Cornish" .
 
 <https://bio.tools/santia> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_3304,
         edam:topic_3444,
@@ -420498,7 +444343,7 @@ C++.""" ;
     biotools:primaryContact <https://orcid.org/0000-0002-2037-8348> .
 
 <https://bio.tools/sap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_2814,
         edam:topic_3474 ;
@@ -420516,8 +444361,33 @@ This project provides the programs and related files of the Simple Angle Predict
     sc:name "SAP" ;
     sc:url "https://gitlab.com/mahnewton/sap" .
 
+<https://bio.tools/sap4ss> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0082,
+        edam:topic_0108,
+        edam:topic_0736,
+        edam:topic_3474,
+        edam:topic_3542 ;
+    sc:citation <https://doi.org/10.1186/S12859-021-04525-6>,
+        "pmcid:PMC8728911",
+        "pubmed:34983370" ;
+    sc:description "Secondary structure specific simpler prediction models for protein backbone angles." ;
+    sc:featureList edam:operation_0249,
+        edam:operation_0267,
+        edam:operation_0479,
+        edam:operation_0502,
+        edam:operation_2488 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "SAP4SS" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://gitlab.com/mahnewton/sap4ss" .
+
 <https://bio.tools/sapdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0196,
@@ -420533,7 +444403,7 @@ This project provides the programs and related files of the Simple Angle Predict
     biotools:primaryContact <https://orcid.org/0000-0002-8902-2876> .
 
 <https://bio.tools/sapfinder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0121 ;
@@ -420552,8 +444422,38 @@ This project provides the programs and related files of the Simple Angle Predict
     biotools:primaryContact "Bo Wen",
         "Shaohang Xu" .
 
+<https://bio.tools/sapfir> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2298" ;
+            sc:name "Gene ID (HGNC)" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1033" ;
+            sc:name "Ensembl gene ID" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0736,
+        edam:topic_0749,
+        edam:topic_3320,
+        edam:topic_3510,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.1186/S12859-022-04804-W>,
+        "pmcid:PMC9229502",
+        "pubmed:35751026" ;
+    sc:description "A webserver for the identification of alternative protein features." ;
+    sc:featureList edam:operation_0264,
+        edam:operation_0303,
+        edam:operation_0433,
+        edam:operation_3501 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "SAPFIR" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://bioinfo-scottgroup.med.usherbrooke.ca/sapfir/" .
+
 <https://bio.tools/saphir> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3382,
@@ -420572,7 +444472,7 @@ This project provides the programs and related files of the Simple Angle Predict
     biotools:primaryContact <https://orcid.org/0000-0002-5786-9538> .
 
 <https://bio.tools/sapling> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0780,
         edam:topic_3474 ;
@@ -420589,14 +444489,14 @@ A method for achieving faster suffix array queries compared to binary search."""
 
 <https://bio.tools/sapp> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_3255" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_3255" ;
+            sc:name "Sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3307,
@@ -420619,7 +444519,7 @@ A method for achieving faster suffix array queries compared to binary search."""
     biotools:primaryContact "Jasper Koehorst" .
 
 <https://bio.tools/sapphire> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3170,
         edam:topic_3474,
@@ -420637,8 +444537,66 @@ For sequences longer than 5k basepairs, it is advisable to download SAPPHIRE and
     sc:name "SAPPHIRE" ;
     sc:url "http://www.biosapphire.com" .
 
+<https://bio.tools/sapporo-service> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web API" ;
+    sc:applicationSubCategory edam:topic_0769 ;
+    sc:citation <https://doi.org/10.12688/f1000research.122924.1> ;
+    sc:description "A standard implementation conforming to the Global Alliance for Genomics and Health (GA4GH) Workflow Execution Service (WES) API specification." ;
+    sc:license "Apache-2.0" ;
+    sc:name "Sapporo-service" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://github.com/sapporo-wes/sapporo-service/blob/main/README.md>,
+        <https://github.com/sapporo-wes/sapporo-service/blob/main/README_ja.md>,
+        <https://github.com/sapporo-wes/sapporo/blob/main/docs/GettingStarted.md> ;
+    sc:softwareVersion "1.4.8" ;
+    sc:url "https://github.com/sapporo-wes/sapporo-service" .
+
+<https://bio.tools/sapporo-web> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0769 ;
+    sc:citation <https://doi.org/10.12688/f1000research.122924.1> ;
+    sc:description "A web application for managing and executing WES services." ;
+    sc:license "Apache-2.0" ;
+    sc:name "Sapporo-web" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://github.com/sapporo-wes/sapporo-web/blob/main/README.md>,
+        <https://github.com/sapporo-wes/sapporo/blob/main/docs/GettingStarted.md> ;
+    sc:softwareVersion "1.2.0" ;
+    sc:url "https://github.com/sapporo-wes/sapporo-web" .
+
+<https://bio.tools/sapredictor> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2301" ;
+            sc:name "SMILES string" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_2840,
+        edam:topic_3343,
+        edam:topic_3474,
+        edam:topic_3500 ;
+    sc:citation <https://doi.org/10.3389/FCHEM.2022.916614>,
+        "pmcid:PMC9326022",
+        "pubmed:35910729" ;
+    sc:description "An Expert System for Screening Chemicals Against Structural Alerts." ;
+    sc:featureList edam:operation_0303,
+        edam:operation_0337,
+        edam:operation_4009 ;
+    sc:isAccessibleForFree true ;
+    sc:name "SApredictor" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://www.sapredictor.cn" .
+
 <https://bio.tools/saps> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_2269,
@@ -420662,7 +444620,7 @@ For sequences longer than 5k basepairs, it is advisable to download SAPPHIRE and
     biotools:primaryContact "Daniel Schmolze" .
 
 <https://bio.tools/saps_ebi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0166,
@@ -420678,7 +444636,7 @@ For sequences longer than 5k basepairs, it is advisable to download SAPPHIRE and
     biotools:primaryContact "Contact Form" .
 
 <https://bio.tools/saqc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_2885,
         edam:topic_3053,
@@ -420696,7 +444654,7 @@ For sequences longer than 5k basepairs, it is advisable to download SAPPHIRE and
     sc:url "http://www.stat.sinica.edu.tw/hsinchou/genetics/quality/SAQC.htm" .
 
 <https://bio.tools/sara> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0097,
@@ -420714,7 +444672,7 @@ For sequences longer than 5k basepairs, it is advisable to download SAPPHIRE and
     sc:url "http://sgu.bioinfo.cipf.es/services/SARA/" .
 
 <https://bio.tools/sara-cnv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3053,
@@ -420730,7 +444688,7 @@ For sequences longer than 5k basepairs, it is advisable to download SAPPHIRE and
     sc:url "http://c2s2.yale.edu/software/SaRa/" .
 
 <https://bio.tools/sara-coffee> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0099,
@@ -420747,8 +444705,29 @@ For sequences longer than 5k basepairs, it is advisable to download SAPPHIRE and
     sc:url "http://tcoffee.crg.cat/apps/tcoffee/do:saracoffee" ;
     biotools:primaryContact "Cedric Notredame" .
 
+<https://bio.tools/sarc-graph> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0092,
+        edam:topic_3336,
+        edam:topic_3382 ;
+    sc:citation <https://doi.org/10.1371/JOURNAL.PCBI.1009443>,
+        "pmcid:PMC8523047",
+        "pubmed:34613960" ;
+    sc:description "Automated segmentation, tracking, and analysis of sarcomeres in hiPSC-derived cardiomyocytes." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3443,
+        edam:operation_3799 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "Sarc-Graph" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/elejeune11/Sarc-Graph" .
+
 <https://bio.tools/sarcoatlas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0202,
         edam:topic_0203,
         edam:topic_3170,
@@ -420767,7 +444746,7 @@ plot and analyze gene expression in skeletal muscles during aging.""" ;
     sc:url "https://sarcoatlas.scicore.unibas.ch/" .
 
 <https://bio.tools/sardu-net> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_2640,
         edam:topic_3444,
@@ -420785,18 +444764,18 @@ SARDU-Net selects subsets of informative qMRI measurements within lengthy pilot
 
 <https://bio.tools/sarek> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3494" ;
-            sc:name "DNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3494" ],
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "DNA sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3497" ;
-            sc:name "DNA sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_3497" ] ;
+            sc:additionalType "http://edamontology.org/data_3497" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "DNA sequence (raw)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence variations" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0622,
@@ -420831,7 +444810,7 @@ SARDU-Net selects subsets of informative qMRI measurements within lengthy pilot
         "Szilvester Juhos" .
 
 <https://bio.tools/sarotup> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3557 ;
@@ -420847,7 +444826,7 @@ SARDU-Net selects subsets of informative qMRI measurements within lengthy pilot
     sc:url "http://i.uestc.edu.cn/sarotup/index.html" .
 
 <https://bio.tools/sarpred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0166,
@@ -420860,10 +444839,35 @@ SARDU-Net selects subsets of informative qMRI measurements within lengthy pilot
         "Mac",
         "Windows" ;
     sc:softwareHelp <http://crdd.osdd.net/raghava//sarpred/> ;
-    sc:url "http://www.imtech.res.in/raghava/sarpred/" .
+    sc:url "http://webs.iiitd.edu.in/raghava/sarpred/" .
+
+<https://bio.tools/sars-arena> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Script" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0634,
+        edam:topic_0769,
+        edam:topic_2830,
+        edam:topic_3948 ;
+    sc:citation <https://doi.org/10.3389/FIMMU.2022.931155>,
+        "pmcid:PMC9315150",
+        "pubmed:35903104" ;
+    sc:description "Sequence and Structure-Guided Selection of Conserved Peptides from SARS-related Coronaviruses for Novel Vaccine Development." ;
+    sc:featureList edam:operation_0252,
+        edam:operation_0416,
+        edam:operation_0482 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "SARS-Arena" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://kavrakilab.github.io/SARS-Arena/#modeller-license-key> ;
+    sc:url "https://github.com/KavrakiLab/SARS-Arena" .
 
 <https://bio.tools/sars-cov-2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3421,
         edam:topic_3474,
@@ -420904,13 +444908,36 @@ Severe Acute Respiratory Syndrome (SARS).""" ;
     sc:url "https://www.proteinatlas.org/humanproteome/sars-cov-2" .
 
 <https://bio.tools/sars-cov-2-network-analysis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "Predict human proteins that interact with SARS-CoV-2 and trace provenance of predictions" ;
     sc:name "SARS-CoV-2 Protein Interaction Network Analysis" ;
     sc:url "https://github.com/Murali-group/SARS-CoV-2-network-analysis" .
 
+<https://bio.tools/sars-cov-2_spike_rbd_ace2> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0128,
+        edam:topic_0154,
+        edam:topic_0199,
+        edam:topic_0736,
+        edam:topic_3577 ;
+    sc:citation <https://doi.org/10.1007/S13167-021-00267-W>,
+        "pmcid:PMC8732965",
+        "pubmed:35013687" ;
+    sc:description "Modeling SARS-CoV-2 spike/ACE2 protein-protein interactions for predicting the binding affinity of new spike variants for ACE2, and novel ACE2 structurally related human protein targets, for COVID-19 handling in the 3PM context." ;
+    sc:featureList edam:operation_0303,
+        edam:operation_0331,
+        edam:operation_2492,
+        edam:operation_3461 ;
+    sc:isAccessibleForFree true ;
+    sc:name "SARS-CoV-2 spike RBD ACE2" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://www.mitoairm.it/covid19affinities" .
+
 <https://bio.tools/sars2020> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0637,
         edam:topic_0821,
@@ -420926,7 +444953,7 @@ Severe Acute Respiratory Syndrome (SARS).""" ;
     sc:url "http://design.rxnfinder.org/sars2020/" .
 
 <https://bio.tools/sarscov23ddatabase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -420946,7 +444973,7 @@ Severe Acute Respiratory Syndrome (SARS).""" ;
     sc:url "https://sars3d.com/" .
 
 <https://bio.tools/sarscovidb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -420965,22 +444992,21 @@ Severe Acute Respiratory Syndrome (SARS).""" ;
 
 <https://bio.tools/sartools> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Gene expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ] ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Gene expression data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ],
+            sc:additionalType "http://edamontology.org/data_2531" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Experiment report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2531" ;
-            sc:name "Experiment report" ;
-            sc:sameAs "http://edamontology.org/data_2531" ],
+            sc:additionalType "http://edamontology.org/data_2531" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Experiment report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2531" ;
-            sc:name "Experiment report" ;
-            sc:sameAs "http://edamontology.org/data_2531" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3308 ;
@@ -421013,30 +445039,30 @@ Severe Acute Respiratory Syndrome (SARS).""" ;
 
 <https://bio.tools/sartools_deseq2> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2333" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ],
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ],
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3170 ;
     sc:citation <https://doi.org/10.1093/nar/gkw343>,
@@ -421055,30 +445081,30 @@ Severe Acute Respiratory Syndrome (SARS).""" ;
 
 <https://bio.tools/sartools_edger> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2333" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ],
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ],
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3168 ;
@@ -421098,18 +445124,17 @@ Severe Acute Respiratory Syndrome (SARS).""" ;
 
 <https://bio.tools/sas> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:name "Protein sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0160 ;
@@ -421132,7 +445157,7 @@ Severe Acute Respiratory Syndrome (SARS).""" ;
     biotools:primaryContact "Roman Laskowski" .
 
 <https://bio.tools/sas-access> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_2269 ;
     sc:description "SAS is an integrated system of software that enables you to do everything from accessing data across multiple sources to performing sophisticated analyses and delivering information across your organization. SAS foundation products are available as individual software modules, and they serve as the foundation for SAS solutions." ;
@@ -421145,7 +445170,7 @@ Severe Acute Respiratory Syndrome (SARS).""" ;
     sc:url "https://www.sas.com/en_us/software/foundation.html" .
 
 <https://bio.tools/sasc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0199,
         edam:topic_2640 ;
@@ -421162,7 +445187,7 @@ SASC is a new model and a robust framework based on Simulated Annealing for the
     sc:url "https://github.com/sciccolella/sasc" .
 
 <https://bio.tools/sase-hunter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_2533,
@@ -421178,7 +445203,7 @@ SASC is a new model and a robust framework based on Simulated Annealing for the
     sc:url "http://www.sjdlab.org/resources/" .
 
 <https://bio.tools/sasgene> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3053 ;
@@ -421194,7 +445219,7 @@ SASC is a new model and a robust framework based on Simulated Annealing for the
     sc:url "http://cuke.hort.ncsu.edu/cucurbit/wehner/software.html" .
 
 <https://bio.tools/saslm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3361,
         edam:topic_3810 ;
@@ -421212,7 +445237,7 @@ This is a core implementation of 'SAS' procedures for linear models - GLM, REG,
     sc:url "http://CRAN.R-project.org/package=sasLM" .
 
 <https://bio.tools/sasom> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0199,
@@ -421229,8 +445254,30 @@ This is a core implementation of 'SAS' procedures for linear models - GLM, REG,
     sc:name "SASOM" ;
     sc:url "https://github.com/rksyouyou/SASOM-pkg" .
 
+<https://bio.tools/saspector> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0196,
+        edam:topic_0203,
+        edam:topic_0622,
+        edam:topic_3673 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC208>,
+        "pubmed:35385055" ;
+    sc:description "Analysis of missing genomic regions in draft genomes of prokaryotes." ;
+    sc:featureList edam:operation_0310,
+        edam:operation_1812,
+        edam:operation_3472,
+        edam:operation_3644 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "SASpector" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/LoGT-KULeuven/SASpector" .
+
 <https://bio.tools/sasquant> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3053,
         edam:topic_3055,
@@ -421246,7 +445293,7 @@ This is a core implementation of 'SAS' procedures for linear models - GLM, REG,
     sc:url "http://cuke.hort.ncsu.edu/cucurbit/wehner/software.html" .
 
 <https://bio.tools/sastbx> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_1317,
         edam:topic_2275 ;
@@ -421262,7 +445309,7 @@ This is a core implementation of 'SAS' procedures for linear models - GLM, REG,
     sc:url "http://sastbx-document.readthedocs.io/en/latest/" .
 
 <https://bio.tools/satchmo-js> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -421279,7 +445326,7 @@ This is a core implementation of 'SAS' procedures for linear models - GLM, REG,
     sc:url "http://phylogenomics.berkeley.edu/software" .
 
 <https://bio.tools/satellog> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0157,
         edam:topic_0199,
@@ -421301,8 +445348,28 @@ This is a core implementation of 'SAS' procedures for linear models - GLM, REG,
     sc:url "http://satellog.bcgsc.ca/" ;
     biotools:primaryContact "Perseus I Missirlis" .
 
+<https://bio.tools/satinn> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0121,
+        edam:topic_0634,
+        edam:topic_3382,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1101/2022.04.16.488549> ;
+    sc:description "An automated neural network-based classification of testicular sections allows for high-throughput histopathology of mouse mutants." ;
+    sc:featureList edam:operation_3435,
+        edam:operation_3443,
+        edam:operation_3553 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "SATINN" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://github.com/conradlab/SATINN" .
+
 <https://bio.tools/sativa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0637,
         edam:topic_3168,
@@ -421318,7 +445385,7 @@ This is a core implementation of 'SAS' procedures for linear models - GLM, REG,
     sc:url "https://github.com/amkozlov/sativa" .
 
 <https://bio.tools/satori> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0749,
         edam:topic_3169,
@@ -421334,8 +445401,24 @@ SATORI is a Self-ATtentiOn based deep learning model to capture Regulatory eleme
     sc:name "SATORI" ;
     sc:url "https://github.com/fahadahaf/SATORI" .
 
+<https://bio.tools/satpdb> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:citation <https://doi.org/10.1093/nar/gkv1114>,
+        "pmcid:PMC4702810",
+        "pubmed:26527728" ;
+    sc:description "SATPdb is a database of structurally annotated therapeutic peptides curated from twenty public domain peptide databases and two datasets." ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "satpdb" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/satpdb/> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/satpdb/" .
+
 <https://bio.tools/satrap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196 ;
     sc:citation <https://doi.org/10.1371/journal.pone.0137436> ;
@@ -421353,7 +445436,7 @@ SATORI is a Self-ATtentiOn based deep learning model to capture Regulatory eleme
     biotools:primaryContact "Davide Campagna" .
 
 <https://bio.tools/saturn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -421375,7 +445458,7 @@ satuRn is a highly performant and scalable method for performing differential tr
     sc:url "https://github.com/statOmics/satuRn" .
 
 <https://bio.tools/sau-net> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3382,
@@ -421391,7 +445474,7 @@ satuRn is a highly performant and scalable method for performing differential tr
     sc:url "https://github.com/mzlr/sau-net" .
 
 <https://bio.tools/savant_genome_browser> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0622,
@@ -421409,7 +445492,7 @@ satuRn is a highly performant and scalable method for performing differential tr
     biotools:primaryContact "Savant Forum" .
 
 <https://bio.tools/saverunner> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0602,
@@ -421427,7 +445510,7 @@ satuRn is a highly performant and scalable method for performing differential tr
     biotools:primaryContact <https://orcid.org/0000-0002-9393-2047> .
 
 <https://bio.tools/savor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0097,
@@ -421449,7 +445532,7 @@ satuRn is a highly performant and scalable method for performing differential tr
     biotools:primaryContact "SAVoR Support" .
 
 <https://bio.tools/savr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3168 ;
@@ -421468,7 +445551,7 @@ satuRn is a highly performant and scalable method for performing differential tr
     biotools:primaryContact "R. Brent Calder" .
 
 <https://bio.tools/saw> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3315 ;
     sc:citation <https://doi.org/10.1007/978-3-030-53288-8_26>,
         "pmcid:PMC7363216" ;
@@ -421479,7 +445562,7 @@ The virtual machine where the tool is ready to run can be found at https://www.c
     sc:url "https://github.com/551100kk/SAW" .
 
 <https://bio.tools/saxs4coll> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_2828 ;
     sc:citation <https://doi.org/10.1107/S1600576717007877>,
@@ -421495,7 +445578,7 @@ The virtual machine where the tool is ready to run can be found at https://www.c
     biotools:primaryContact <http://orcid.org/0000-0003-0348-6547> .
 
 <https://bio.tools/saxster> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0736,
@@ -421512,7 +445595,7 @@ The virtual machine where the tool is ready to run can be found at https://www.c
     sc:url "http://zhanglab.ccmb.med.umich.edu/SAXSTER/" .
 
 <https://bio.tools/sbars> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0157,
         edam:topic_0654,
@@ -421527,7 +445610,7 @@ The virtual machine where the tool is ready to run can be found at https://www.c
     sc:url "http://mpyatkov.github.io/sbars/" .
 
 <https://bio.tools/sbc_tools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0084,
@@ -421549,7 +445632,7 @@ The virtual machine where the tool is ready to run can be found at https://www.c
     biotools:primaryContact "Oliver Frings" .
 
 <https://bio.tools/sbetoolbox> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_2259,
         edam:topic_2269,
@@ -421566,7 +445649,7 @@ The virtual machine where the tool is ready to run can be found at https://www.c
     sc:url "https://github.com/biocoder/SBEToolbox" .
 
 <https://bio.tools/sbgn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0108,
         edam:topic_0602,
@@ -421584,7 +445667,7 @@ The virtual machine where the tool is ready to run can be found at https://www.c
     sc:url "http://sbgn.org" .
 
 <https://bio.tools/sbgn_bricks> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0602,
         edam:topic_0749,
@@ -421603,7 +445686,7 @@ SBGN bricks are building blocks representing basic biological patterns. They can
     sc:url "http://sbgnbricks.org" .
 
 <https://bio.tools/sbgntikz> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3068 ;
@@ -421623,7 +445706,7 @@ SBGN bricks are building blocks representing basic biological patterns. They can
     biotools:primaryContact "Adrien Rougny" .
 
 <https://bio.tools/sbgnview> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0769,
@@ -421640,7 +445723,7 @@ SBGN bricks are building blocks representing basic biological patterns. They can
     biotools:primaryContact "Weijun Luo" .
 
 <https://bio.tools/sbgr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3071 ;
@@ -421661,7 +445744,7 @@ SBGN bricks are building blocks representing basic biological patterns. They can
     biotools:primaryContact "Nan Xiao" .
 
 <https://bio.tools/sbioimportBerkeleyMadonna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2259,
         edam:topic_3375 ;
@@ -421675,8 +445758,27 @@ SBGN bricks are building blocks representing basic biological patterns. They can
     sc:url "https://www.mathworks.com/matlabcentral/fileexchange/39719-sbioimportberkeleymadonna" ;
     biotools:primaryContact "Jeremy Huard" .
 
+<https://bio.tools/sbmate> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0089,
+        edam:topic_0621,
+        edam:topic_0821,
+        edam:topic_2259 ;
+    sc:citation <https://doi.org/10.1101/2021.10.09.463757> ;
+    sc:description "A Framework for Evaluating Quality of Annotations in Systems Biology Models." ;
+    sc:featureList edam:operation_2422,
+        edam:operation_2426 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "SBMate" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/woosubs/SBMate" .
+
 <https://bio.tools/sbmclone> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0625,
         edam:topic_2229,
@@ -421696,7 +445798,7 @@ SBMClone is a tool that uses stochastic block model (SBM) inference methods to i
     sc:url "https://github.com/raphael-group/SBMClone" .
 
 <https://bio.tools/sbml> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Suite" ;
     sc:applicationSubCategory edam:topic_2259 ;
@@ -421715,7 +445817,7 @@ SBMClone is a tool that uses stochastic block model (SBM) inference methods to i
     sc:url "http://sbml.org/Software" .
 
 <https://bio.tools/sbml2latex> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_2259,
         edam:topic_3068,
@@ -421732,7 +445834,7 @@ SBMClone is a tool that uses stochastic block model (SBM) inference methods to i
     sc:url "http://sourceforge.net/projects/sbml2latex/" .
 
 <https://bio.tools/sbmleditor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_2259 ;
     sc:citation <https://doi.org/10.1186/1471-2105-8-79> ;
@@ -421747,7 +445849,7 @@ SBMClone is a tool that uses stochastic block model (SBM) inference methods to i
     sc:url "http://www.ebi.ac.uk/compneur-srv/SBMLeditor.html" .
 
 <https://bio.tools/sbmlmod> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2259,
         edam:topic_3366 ;
@@ -421765,7 +445867,7 @@ SBMClone is a tool that uses stochastic block model (SBM) inference methods to i
     biotools:primaryContact "Ines Heiland" .
 
 <https://bio.tools/sbmlr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2259 ;
@@ -421783,7 +445885,7 @@ SBMClone is a tool that uses stochastic block model (SBM) inference methods to i
     biotools:primaryContact "Tomas Radivoyevitch" .
 
 <https://bio.tools/sbmlsimulator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2259,
         edam:topic_3068,
@@ -421801,7 +445903,7 @@ SBMLsimulator is a fast, accurate, and easily usable program for dynamic model s
     sc:url "http://www.cogsys.cs.uni-tuebingen.de/software/SBMLsimulator/" .
 
 <https://bio.tools/sbmlsqueezer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0821,
@@ -421819,7 +445921,7 @@ SBMLsimulator is a fast, accurate, and easily usable program for dynamic model s
     biotools:primaryContact "Andreas Dräger" .
 
 <https://bio.tools/sbmlwebapp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2259,
@@ -421837,7 +445939,7 @@ SBMLsimulator is a fast, accurate, and easily usable program for dynamic model s
     sc:url "https://github.com/TakahiroYamada/SBMLWebApp" .
 
 <https://bio.tools/sbmolgen> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0209,
@@ -421863,7 +445965,7 @@ SBMLsimulator is a fast, accurate, and easily usable program for dynamic model s
     sc:url "https://github.com/clinfo/SBMolGen" .
 
 <https://bio.tools/sbmopenmm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Plug-in" ;
     sc:applicationSubCategory edam:topic_0176,
@@ -421888,7 +445990,7 @@ SBMLsimulator is a fast, accurate, and easily usable program for dynamic model s
     sc:url "https://github.com/CompBiochBiophLab/sbm-openmm" .
 
 <https://bio.tools/sbo_ws> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_2259,
         edam:topic_3071 ;
@@ -421904,7 +446006,7 @@ SBMLsimulator is a fast, accurate, and easily usable program for dynamic model s
     sc:url "http://www.ebi.ac.uk/sbo/SBOWSLib/docwsdl/wsdldoc.html" .
 
 <https://bio.tools/sbol> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3047,
         edam:topic_3398,
@@ -421923,7 +446025,7 @@ The Synthetic Biology Open Language (SBOL) is a community-developed data standar
     sc:url "https://github.com/SynBioDex/SBOLTestSuite/tree/master/SBOL3/multicellular" .
 
 <https://bio.tools/sbolcanvas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3053,
         edam:topic_3382,
@@ -421943,7 +446045,7 @@ The Synthetic Biology Open Language (SBOL) is a community-developed data standar
     sc:url "https://sbolcanvas.org" .
 
 <https://bio.tools/sbpipe> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2259,
         edam:topic_3524 ;
@@ -421959,7 +446061,7 @@ The Synthetic Biology Open Language (SBOL) is a community-developed data standar
     biotools:primaryContact "Piero Dallepezze" .
 
 <https://bio.tools/sbpks2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0160 ;
@@ -421974,8 +446076,40 @@ The Synthetic Biology Open Language (SBOL) is a community-developed data standar
     sc:url "http://www.nii.ac.in/sbspks2.html" ;
     biotools:primaryContact "Debasisa Mohanty" .
 
+<https://bio.tools/sbsa> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1353" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Sequence motif" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1046" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Strain name" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0199,
+        edam:topic_0622,
+        edam:topic_0659,
+        edam:topic_0749,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAB877>,
+        "pmcid:PMC8500130",
+        "pubmed:34606615" ;
+    sc:description "An online service for somatic binding sequence annotation." ;
+    sc:featureList edam:operation_0361,
+        edam:operation_0445,
+        edam:operation_3096,
+        edam:operation_3227,
+        edam:operation_3901 ;
+    sc:isAccessibleForFree true ;
+    sc:name "SBSA" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://innovebioinfo.com/Annotation/SBSA/SBSA.php" .
+
 <https://bio.tools/sbscl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2259,
         edam:topic_3524,
@@ -421992,7 +446126,7 @@ The Synthetic Biology Open Language (SBOL) is a community-developed data standar
     biotools:primaryContact "Andreas Dräger" .
 
 <https://bio.tools/sbspks> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -422009,7 +446143,7 @@ The Synthetic Biology Open Language (SBOL) is a community-developed data standar
     sc:url "http://www.nii.ac.in/~pksdb/sbspks/homepage.html" .
 
 <https://bio.tools/sbt_interface> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0199,
@@ -422023,7 +446157,7 @@ The Synthetic Biology Open Language (SBOL) is a community-developed data standar
     sc:url "http://www.ncbi.nlm.nih.gov/gv/mhc/sbt.cgi?cmd=main" .
 
 <https://bio.tools/sbw> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_2259,
@@ -422039,7 +446173,7 @@ The Synthetic Biology Open Language (SBOL) is a community-developed data standar
     sc:url "http://sbw.sourceforge.net/" .
 
 <https://bio.tools/sbwt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654,
@@ -422054,8 +446188,29 @@ The Synthetic Biology Open Language (SBOL) is a community-developed data standar
     sc:softwareHelp <http://jhhung.github.io/sBWT/> ;
     sc:url "http://jhhung.github.io/sBWT/" .
 
+<https://bio.tools/sc-cgconv> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0099,
+        edam:topic_2229,
+        edam:topic_3170,
+        edam:topic_3308,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1101/2021.11.15.468695> ;
+    sc:description "A topology preserving graph convolution network for clustering of single-cell RNA seq data" ;
+    sc:featureList edam:operation_3432,
+        edam:operation_3436,
+        edam:operation_3937 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "sc-CGconv" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/Snehalikalall/CopulaGCN" .
+
 <https://bio.tools/sc-gan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3384,
         edam:topic_3444,
@@ -422073,7 +446228,7 @@ The Synthetic Biology Open Language (SBOL) is a community-developed data standar
     biotools:primaryContact "Haoyu Lan" .
 
 <https://bio.tools/sc-maestro> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_0769,
@@ -422100,7 +446255,7 @@ We provided the codes used in evaluating scATAC-seq clustering, automatic cell-t
     sc:url "http://github.com/liulab-dfci/MAESTRO" .
 
 <https://bio.tools/sc-renf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3170,
         edam:topic_3308,
@@ -422113,7 +446268,7 @@ We provided the codes used in evaluating scATAC-seq clustering, automatic cell-t
     sc:url "https://github.com/Snehalikalall/sc-REnF" .
 
 <https://bio.tools/sc1> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -422134,7 +446289,7 @@ We provided the codes used in evaluating scATAC-seq clustering, automatic cell-t
         <https://orcid.org/0000-0003-0574-6656> .
 
 <https://bio.tools/sc1cc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0203,
         edam:topic_2229,
@@ -422152,7 +446307,7 @@ SC1: scRNA-Seq Analysis Pipeline.""" ;
     sc:url "https://sc1.engr.uconn.edu/" .
 
 <https://bio.tools/sc2disease> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_2885,
         edam:topic_3170,
@@ -422169,8 +446324,59 @@ The transcriptome plays a crucial role in the maintenance of cell identity and t
     sc:name "SC2disease" ;
     sc:url "http://easybioai.com/sc2disease/" .
 
+<https://bio.tools/sc2menetdrug> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Desktop application" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0602,
+        edam:topic_2229,
+        edam:topic_3170,
+        edam:topic_3360 ;
+    sc:citation <https://doi.org/10.1101/2021.11.15.468755> ;
+    sc:description "A computational tool to uncover inter-cell signaling targets and identify relevant drugs based on single cell RNA-seq data." ;
+    sc:featureList edam:operation_3223,
+        edam:operation_3557,
+        edam:operation_3935,
+        edam:operation_4009 ;
+    sc:isAccessibleForFree true ;
+    sc:name "SC2MeNetDrug" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://fuhaililab.github.io/sc2MeNetDrug/" .
+
+<https://bio.tools/sc2sepsis> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_3112" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Gene expression matrix" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2299" ;
+            sc:name "Gene name" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0625,
+        edam:topic_0634,
+        edam:topic_3170,
+        edam:topic_3295,
+        edam:topic_3308 ;
+    sc:citation <https://doi.org/10.1093/DATABASE/BAAC061>,
+        "pmcid:PMC9387141",
+        "pubmed:35980286" ;
+    sc:description "Sepsis single-cell whole gene expression database." ;
+    sc:featureList edam:operation_2421,
+        edam:operation_2422,
+        edam:operation_3223 ;
+    sc:isAccessibleForFree true ;
+    sc:name "SC2sepsis" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://www.rjh-sc2sepsis.com/" .
+
 <https://bio.tools/sc3> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3170 ;
@@ -422191,7 +446397,7 @@ The transcriptome plays a crucial role in the maintenance of cell identity and t
     biotools:primaryContact <http://orcid.org/0000-0003-1893-2255> .
 
 <https://bio.tools/scAEspy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0121,
         edam:topic_3170 ;
@@ -422204,7 +446410,7 @@ The transcriptome plays a crucial role in the maintenance of cell identity and t
     sc:url "https://gitlab.com/cvejic-group/scaespy" .
 
 <https://bio.tools/scATAC-pro> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_0769,
         edam:topic_3168,
@@ -422224,7 +446430,7 @@ A comprehensive pipeline for single cell ATAC-seq data processing and analysis""
     sc:url "https://github.com/tanlabcode/scATAC-pro" .
 
 <https://bio.tools/scATAC-seq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0204,
         edam:topic_0769,
@@ -422251,7 +446457,7 @@ In its current form, the ATAC-seq pipeline is a prototype and will likely underg
     sc:url "https://www.encodeproject.org/atac-seq/" .
 
 <https://bio.tools/scAlign> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3308,
         edam:topic_3474 ;
@@ -422266,7 +446472,7 @@ In its current form, the ATAC-seq pipeline is a prototype and will likely underg
     sc:url "https://bioconductor.org/packages/release/bioc/html/scAlign.html" .
 
 <https://bio.tools/scBFA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3170,
         edam:topic_3308 ;
@@ -422282,7 +446488,7 @@ In its current form, the ATAC-seq pipeline is a prototype and will likely underg
     sc:url "https://bioconductor.org/packages/devel/bioc/html/scBFA.html" .
 
 <https://bio.tools/scBio> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3308,
@@ -422309,7 +446515,7 @@ In its current form, the ATAC-seq pipeline is a prototype and will likely underg
     biotools:primaryContact "Amit Frishberg" .
 
 <https://bio.tools/scCCESS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3170,
         edam:topic_3308,
@@ -422325,7 +446531,7 @@ In its current form, the ATAC-seq pipeline is a prototype and will likely underg
     sc:url "https://github.com/gedcom/scCCESS" .
 
 <https://bio.tools/scCancer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2229,
         edam:topic_2640,
@@ -422342,7 +446548,7 @@ The scCancer package focuses on processing and analyzing droplet-based scRNA-seq
     sc:url "http://lifeome.net/software/sccancer/" .
 
 <https://bio.tools/scDAPA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3170,
         edam:topic_3512 ;
@@ -422355,7 +446561,7 @@ The scCancer package focuses on processing and analyzing droplet-based scRNA-seq
     sc:url "https://scdapa.sourceforge.io" .
 
 <https://bio.tools/scDesign> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0130,
         edam:topic_3308,
         edam:topic_3678 ;
@@ -422370,7 +446576,7 @@ The scCancer package focuses on processing and analyzing droplet-based scRNA-seq
     sc:url "https://github.com/Vivianstats/scDesign" .
 
 <https://bio.tools/scFBA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0602,
@@ -422392,7 +446598,7 @@ The scCancer package focuses on processing and analyzing droplet-based scRNA-seq
     biotools:primaryContact "BIMIB" .
 
 <https://bio.tools/scGEAToolbox> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0769,
         edam:topic_3170,
@@ -422414,7 +446620,7 @@ Results: I developed scGEAToolbox—a Matlab toolbox for scRNA-seq data analysis
     sc:url "https://github.com/jamesjcai/scGEAToolbox" .
 
 <https://bio.tools/scGen> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3308,
         edam:topic_3474 ;
@@ -422427,7 +446633,7 @@ Results: I developed scGEAToolbox—a Matlab toolbox for scRNA-seq data analysis
     sc:url "https://github.com/theislab/scgen" .
 
 <https://bio.tools/scHLAcount> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2830,
         edam:topic_3170 ;
@@ -422441,7 +446647,7 @@ Results: I developed scGEAToolbox—a Matlab toolbox for scRNA-seq data analysis
     sc:url "https://github.com/10XGenomics/scHLAcount" .
 
 <https://bio.tools/scHinter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3170 ;
     sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTZ627>,
@@ -422452,7 +446658,7 @@ Results: I developed scGEAToolbox—a Matlab toolbox for scRNA-seq data analysis
     sc:url "https://github.com/BMILAB/scHinter" .
 
 <https://bio.tools/scMNase-seq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0632,
         edam:topic_2229,
         edam:topic_3168,
@@ -422470,7 +446676,7 @@ This repository includes codes for data analysis in scMNase paper""" ;
     sc:url "https://github.com/binbinlai2012/scMNase" .
 
 <https://bio.tools/scMatch> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3170,
@@ -422489,7 +446695,7 @@ This repository includes codes for data analysis in scMNase paper""" ;
     biotools:primaryContact "Rui Hou" .
 
 <https://bio.tools/scMerge> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2229,
         edam:topic_3170 ;
@@ -422504,7 +446710,7 @@ This repository includes codes for data analysis in scMNase paper""" ;
     sc:url "https://sydneybiox.github.io/scMerge/reference/scSEGIndex.html" .
 
 <https://bio.tools/scNPF> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3170,
@@ -422529,7 +446735,7 @@ This repository includes codes for data analysis in scMNase paper""" ;
         "Xiaohui Wu" .
 
 <https://bio.tools/scOrange> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3308,
@@ -422548,7 +446754,7 @@ This repository includes codes for data analysis in scMNase paper""" ;
     biotools:primaryContact "Blaž Zupan" .
 
 <https://bio.tools/scPCA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3170,
         edam:topic_3308,
@@ -422567,7 +446773,7 @@ A toolbox for sparse contrastive principal component analysis (scPCA) of high-di
     sc:url "https://bioconductor.org/packages/scPCA" .
 
 <https://bio.tools/scPred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2229,
         edam:topic_3170,
@@ -422591,7 +446797,7 @@ scPred is a general method to predict cell types based on variance structure dec
     sc:url "https://github.com/powellgenomicslab/scPred/" .
 
 <https://bio.tools/scRNA-seq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3170,
         edam:topic_3308 ;
@@ -422606,23 +446812,8 @@ scPred is a general method to predict cell types based on variance structure dec
     sc:name "scRNA-seq" ;
     sc:url "https://github.com/jdime/scRNAseq_cell_cluster_labeling" .
 
-<https://bio.tools/scRNA-seq_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_2229,
-        edam:topic_3170,
-        edam:topic_3308 ;
-    sc:citation <https://doi.org/10.12688/F1000RESEARCH.18490.3>,
-        "pmcid:PMC6720041",
-        "pubmed:31508207" ;
-    sc:description "> MEDIUM CONFIDENCE! | Evaluation of methods to assign cell type labels to cell clusters from single-cell RNA-sequencing data | Scripts to run and benchmark scRNA-seq cell cluster labeling methods | This repository contains scripts to run and benchmark scRNA-seq cell cluster labeling methods and is a companion to our paper 'Evaluation of methods to assign cell type labels to cell clusters from single-cell RNA-sequencing data' (Diaz-Mejia JJ et al (2019) [Preprint at F1000Research https://doi.org/10.12688/f1000research.18490.1]" ;
-    sc:featureList edam:operation_0313,
-        edam:operation_2436,
-        edam:operation_3680 ;
-    sc:license "MIT" ;
-    sc:name "scRNA-seq_autogenerated" ;
-    sc:url "https://github.com/jdime/scRNAseq_cell_cluster_labeling" .
-
 <https://bio.tools/scRNABatchQC> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3308 ;
     sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTZ601>,
@@ -422633,7 +446824,7 @@ scPred is a general method to predict cell types based on variance structure dec
     sc:url "https://github.com/liuqivandy/scRNABatchQC" .
 
 <https://bio.tools/scRNAseq_Benchmark> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3308,
         edam:topic_3512 ;
@@ -422646,7 +446837,7 @@ scPred is a general method to predict cell types based on variance structure dec
     sc:url "https://github.com/tabdelaal/scRNAseq_Benchmark" .
 
 <https://bio.tools/scReClassify> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3170,
         edam:topic_3308,
@@ -422666,7 +446857,7 @@ scReClassify is a post hoc cell type classification of single-cell RNA-sequencin
     sc:url "https://github.com/SydneyBioX/scReClassify" .
 
 <https://bio.tools/scScope> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3170,
@@ -422687,7 +446878,7 @@ scReClassify is a post hoc cell type classification of single-cell RNA-sequencin
     biotools:primaryContact "Altschuler-Wu Laboratory" .
 
 <https://bio.tools/scSplit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0625,
         edam:topic_2885,
@@ -422715,7 +446906,7 @@ It has been tested on up to 8 real mixed samples (10X pipeline), and up to 32 mi
     sc:url "https://github.com/jon-xu/scSplit" .
 
 <https://bio.tools/scTIM> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_2229,
         edam:topic_3170,
@@ -422733,7 +446924,7 @@ scTIM is a convenient tool for cell-type indicative marker detection based on si
     sc:url "https://github.com/Frank-Orwell/scTIM" .
 
 <https://bio.tools/scVelo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
         edam:topic_2229,
@@ -422749,8 +446940,32 @@ Free document hosting provided by Read the Docs""" ;
     sc:name "scVelo" ;
     sc:url "https://scvelo.org" .
 
+<https://bio.tools/scaanet> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_3170,
+        edam:topic_3315,
+        edam:topic_3474,
+        edam:topic_3676 ;
+    sc:citation <https://doi.org/10.1371/JOURNAL.PCBI.1010025>,
+        "pmcid:PMC9007392",
+        "pubmed:35363784" ;
+    sc:description "Non-linear archetypal analysis of single-cell RNA-seq data by deep autoencoders." ;
+    sc:featureList edam:operation_0313,
+        edam:operation_0314,
+        edam:operation_3891 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "scAAnet" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://nbviewer.org/github/KrishnaswamyLab/AAnet/blob/master/notebooks/AAnet_tutorial_MNIST.ipynb> ;
+    sc:url "https://github.com/KrishnaswamyLab/AAnet" .
+
 <https://bio.tools/scadapt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2229,
@@ -422766,7 +446981,7 @@ Free document hosting provided by Read the Docs""" ;
     sc:url "https://github.com/zhoux85/scAdapt" .
 
 <https://bio.tools/scaden> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2229,
         edam:topic_3170,
@@ -422785,8 +447000,31 @@ Free document hosting provided by Read the Docs""" ;
     sc:softwareHelp <https://scaden.readthedocs.io> ;
     sc:url "https://scaden.ims.bio" .
 
+<https://bio.tools/scadie> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0625,
+        edam:topic_2229,
+        edam:topic_3170,
+        edam:topic_3518 ;
+    sc:citation <https://doi.org/10.1186/S13059-022-02688-W>,
+        "pmcid:PMC9199219",
+        "pubmed:35706040" ;
+    sc:description "Aimultaneous estimation of cell type proportions and cell type-specific gene expressions using SCAD-based iterative estimating procedure." ;
+    sc:featureList edam:operation_2436,
+        edam:operation_3223,
+        edam:operation_3629 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "SCADIE" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/tdw1221/SCADIE" .
+
 <https://bio.tools/scafSLICR> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3372 ;
     sc:citation <https://doi.org/10.1371/JOURNAL.PONE.0225007>,
         "pmcid:PMC6863524",
@@ -422804,7 +447042,7 @@ Choose a web site to get translated content where available and see local events
     sc:url "http://www.mathworks.com/matlabcentral/fileexchange/72856-scafslicr" .
 
 <https://bio.tools/scafe> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0749,
@@ -422823,8 +447061,19 @@ Choose a web site to get translated content where available and see local events
     sc:operatingSystem "Linux" ;
     sc:url "https://github.com/chung-lab/scafe" .
 
+<https://bio.tools/scaff10x> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workflow" ;
+    sc:applicationSubCategory edam:topic_0196,
+        edam:topic_0622 ;
+    sc:description "Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads." ;
+    sc:featureList edam:operation_0525 ;
+    sc:name "Scaff10X" ;
+    sc:softwareVersion "4.1" ;
+    sc:url "https://sourceforge.net/projects/phusion2/" .
+
 <https://bio.tools/scaffmatch> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3125,
@@ -422838,7 +447087,7 @@ Choose a web site to get translated content where available and see local events
     sc:url "http://alan.cs.gsu.edu/NGS/?q=content/scaffmatch" .
 
 <https://bio.tools/scaffold_hunter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_2258,
@@ -422855,7 +447104,7 @@ Choose a web site to get translated content where available and see local events
     biotools:primaryContact "Petra Mutzel" .
 
 <https://bio.tools/scaffold_viewer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0092,
@@ -422873,7 +447122,7 @@ Choose a web site to get translated content where available and see local events
     sc:url "http://www.proteomesoftware.com/Scaffold/Scaffold_viewer.htm" .
 
 <https://bio.tools/scaffolder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3071 ;
@@ -422889,7 +447138,7 @@ Choose a web site to get translated content where available and see local events
     biotools:primaryContact "Barton M.D." .
 
 <https://bio.tools/scaffoldgraph> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0209,
         edam:topic_2258,
         edam:topic_3047,
@@ -422905,7 +447154,7 @@ Choose a web site to get translated content where available and see local events
     sc:url "https://github.com/UCLCheminformatics/ScaffoldGraph" .
 
 <https://bio.tools/scaffoldscaffolder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btv548>,
@@ -422919,7 +447168,7 @@ Choose a web site to get translated content where available and see local events
     sc:url "http://bioresearch.byu.edu/scaffoldscaffolder/" .
 
 <https://bio.tools/scagecom> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0153,
@@ -422942,7 +447191,7 @@ Choose a web site to get translated content where available and see local events
     sc:url "https://scagecom.org" .
 
 <https://bio.tools/scai> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_2229,
         edam:topic_3170,
@@ -422962,7 +447211,7 @@ Choose a web site to get translated content where available and see local events
     sc:url "https://github.com/amsszlh/scAI" .
 
 <https://bio.tools/scaide> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0102,
@@ -422981,7 +447230,7 @@ Choose a web site to get translated content where available and see local events
     sc:url "https://github.com/tinglabs/scAIDE" .
 
 <https://bio.tools/scalce> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/bts593> ;
@@ -422993,7 +447242,7 @@ Choose a web site to get translated content where available and see local events
     biotools:primaryContact "SVALCE Support" .
 
 <https://bio.tools/scale-space-vessel-tracing> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -423011,26 +447260,8 @@ Choose a web site to get translated content where available and see local events
     sc:url "https://www.mathworks.com/matlabcentral/fileexchange/67933-scale-space-vessel-tracing-implementation-of-lindeberg-s-algorithms" ;
     biotools:primaryContact "Constantino Carlos Reyes-Aldasoro" .
 
-<https://bio.tools/scale-up> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3305,
-        edam:topic_3318,
-        edam:topic_3390 ;
-    sc:citation <https://doi.org/10.1186/S12966-019-0868-4>,
-        "pmcid:PMC6839114",
-        "pubmed:31699095" ;
-    sc:description """Implementation and scale-up of physical activity and behavioural nutrition interventions.
-
-BACKGROUND:Interventions that work must be effectively delivered at scale to achieve population level benefits. Researchers must choose among a vast array of implementation frameworks (> 60) that guide design and evaluation of implementation and scale-up processes. Therefore, we sought to recommend conceptual frameworks that can be used to design, inform, and evaluate implementation of physical activity (PA) and nutrition interventions at different stages of the program life cycle. We also sought to recommend a minimum data set of implementation outcome and determinant variables (indicators) as well as measures and tools deemed most relevant for PA and nutrition researchers. METHODS:We adopted a five-round modified Delphi methodology.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'frameworks'""" ;
-    sc:featureList edam:operation_3799 ;
-    sc:name "scale-up" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31699095" .
-
 <https://bio.tools/scale4c> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:citation <https://doi.org/10.7490/f1000research.1114611.1> ;
@@ -423048,7 +447279,7 @@ BACKGROUND:Interventions that work must be effectively delivered at scale to ach
     biotools:primaryContact "Carolin Walter" .
 
 <https://bio.tools/scaledata> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3172,
         edam:topic_3315,
@@ -423065,7 +447296,7 @@ BACKGROUND:Interventions that work must be effectively delivered at scale to ach
     biotools:primaryContact "Joris Meurs" .
 
 <https://bio.tools/scaleqc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3168 ;
     sc:citation <https://doi.org/10.1101/2020.02.09.940932> ;
@@ -423079,7 +447310,7 @@ Per-base quality values in NGS sequencing data take a significant portion of sto
     sc:url "https://github.com/xmuyulab/samtools" .
 
 <https://bio.tools/scaleus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "SPARQL endpoint",
         "Web API",
         "Web application",
@@ -423104,7 +447335,7 @@ Per-base quality values in NGS sequencing data take a significant portion of sto
     sc:url "http://bioinformatics-ua.github.io/scaleus/" .
 
 <https://bio.tools/scalpel> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_2533,
@@ -423120,7 +447351,7 @@ Per-base quality values in NGS sequencing data take a significant portion of sto
     sc:url "http://scalpel.sourceforge.net/" .
 
 <https://bio.tools/scamace> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3295,
@@ -423142,7 +447373,7 @@ Per-base quality values in NGS sequencing data take a significant portion of sto
     sc:url "https://github.com/cuhklinlab/scAMACE_py" .
 
 <https://bio.tools/scamdetective> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0593,
         edam:topic_3047,
@@ -423165,14 +447396,12 @@ The SCAM Detective application provides an alternative method for assessing the
 
 <https://bio.tools/scampi> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:name "Protein sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:name "Protein features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btv709> ;
@@ -423188,7 +447417,7 @@ The SCAM Detective application provides an alternative method for assessing the
     sc:url "http://scampi.cbr.su.se/" .
 
 <https://bio.tools/scampi2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0736,
@@ -423204,8 +447433,27 @@ The SCAM Detective application provides an alternative method for assessing the
     sc:softwareHelp <http://scampi.bioinfo.se/pred/help/> ;
     sc:url "http://scampi.bioinfo.se" .
 
+<https://bio.tools/scampp> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0081,
+        edam:topic_3293 ;
+    sc:citation <https://doi.org/10.1109/TCBB.2022.3170386>,
+        "pubmed:35471888" ;
+    sc:description "Scaling Alignment-based Phylogenetic Placement to Large Trees." ;
+    sc:featureList edam:operation_0323,
+        edam:operation_0326,
+        edam:operation_0567 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "SCAMPP" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/chry04/PLUSplacer" .
+
 <https://bio.tools/scan-atac> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -423221,7 +447469,7 @@ The SCAM Detective application provides an alternative method for assessing the
     sc:url "http://scan-atac-sim.gersteinlab.org" .
 
 <https://bio.tools/scan-x> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0621 ;
     sc:citation <https://doi.org/10.1002/0471250953.bi1316s36> ;
@@ -423236,7 +447484,7 @@ The SCAM Detective application provides an alternative method for assessing the
     sc:url "http://scan-x.med.harvard.edu/scan-x.html" .
 
 <https://bio.tools/scanaflp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0625,
@@ -423252,7 +447500,7 @@ The SCAM Detective application provides an alternative method for assessing the
     sc:url "http://www-leca.ujf-grenoble.fr/moyens-techniques/logiciels/article/population-genomics-software#ScanAFLP" .
 
 <https://bio.tools/scanev> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0611,
         edam:topic_3474 ;
@@ -423275,7 +447523,7 @@ Upload up to 10 images for detection.""" ;
     sc:url "https://bioeng.ru/scanev" .
 
 <https://bio.tools/scang> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0622,
@@ -423296,8 +447544,26 @@ SCANG is an R package for performing a flexible and computationally efficient sc
     sc:name "SCANG" ;
     sc:url "https://github.com/zilinli1988/SCANG" .
 
+<https://bio.tools/scangrow> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Desktop application" ;
+    sc:applicationSubCategory edam:topic_3301,
+        edam:topic_3382,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.3389/FMICB.2022.900596>,
+        "pmcid:PMC9343779",
+        "pubmed:35928161" ;
+    sc:description "Standalone software application to create bacterial growth curves based on the classification of acquired images of bacterial cultures in microplates." ;
+    sc:featureList edam:operation_3443 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "ScanGrow" ;
+    sc:operatingSystem "Windows" ;
+    sc:softwareHelp <https://github.com/lauraespina/ScanGrow/blob/main/Installation_package/ScanGrow_Manual.pdf> ;
+    sc:url "https://github.com/lauraespina/ScanGrow" .
+
 <https://bio.tools/scanmot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0160 ;
@@ -423321,7 +447587,7 @@ SCANG is an R package for performing a flexible and computationally efficient sc
         "Sowdhamini R." .
 
 <https://bio.tools/scanner> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_2229,
         edam:topic_3170,
@@ -423336,18 +447602,16 @@ SCANG is an R package for performing a flexible and computationally efficient sc
 
 <https://bio.tools/scannet> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2291" ;
-            sc:name "UniProt ID" ;
-            sc:sameAs "http://edamontology.org/data_2291" ],
+            sc:additionalType "http://edamontology.org/data_1127" ;
+            sc:name "PDB ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1127" ;
-            sc:name "PDB ID" ;
-            sc:sameAs "http://edamontology.org/data_1127" ] ;
+            sc:additionalType "http://edamontology.org/data_2291" ;
+            sc:name "UniProt ID" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2080" ;
-            sc:name "Database search results" ;
-            sc:sameAs "http://edamontology.org/data_2080" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2080" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Database search results" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0736,
@@ -423367,8 +447631,30 @@ SCANG is an R package for performing a flexible and computationally efficient sc
         "Windows" ;
     sc:url "http://bioinfo3d.cs.tau.ac.il/ScanNet/" .
 
+<https://bio.tools/scannotatr> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0769,
+        edam:topic_2229,
+        edam:topic_3170,
+        edam:topic_3308,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1186/S12859-022-04574-5>,
+        "pmcid:PMC8762856",
+        "pubmed:35038984" ;
+    sc:description "The scAnnotatR package automatically classifies cells in scRNA-seq datasets. It is simple to use with a clear infrastructure to easily add additional cell type classification models. scAnnotatR support both Seurat and SingleCellExperiment objects as input." ;
+    sc:featureList edam:operation_3435 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "scAnnotatR" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://bioconductor.org/packages/release/bioc/manuals/scAnnotatR/man/scAnnotatR.pdf> ;
+    sc:url "https://github.com/grisslab/scAnnotatR" .
+
 <https://bio.tools/scanpath> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3382,
         edam:topic_3474 ;
@@ -423383,7 +447669,7 @@ SCANG is an R package for performing a flexible and computationally efficient sc
     sc:url "https://github.com/sunwj/scanpath" .
 
 <https://bio.tools/scanprosite> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -423406,7 +447692,7 @@ SCANG is an R package for performing a flexible and computationally efficient sc
     biotools:primaryContact "Contact Form" .
 
 <https://bio.tools/scanps> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -423424,7 +447710,7 @@ SCANG is an R package for performing a flexible and computationally efficient sc
     biotools:primaryContact "Barton Group Secretary" .
 
 <https://bio.tools/scanpy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2229,
@@ -423441,7 +447727,7 @@ SCANG is an R package for performing a flexible and computationally efficient sc
     biotools:primaryContact "F. Alexander Wolf" .
 
 <https://bio.tools/scansite> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0160,
@@ -423468,7 +447754,7 @@ SCANG is an R package for performing a flexible and computationally efficient sc
     sc:url "http://scansite.mit.edu/" .
 
 <https://bio.tools/scanstat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3053,
@@ -423483,7 +447769,7 @@ SCANG is an R package for performing a flexible and computationally efficient sc
     sc:url "http://www.jurgott.org/linkage/scanstat.html" .
 
 <https://bio.tools/scant> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0749,
@@ -423502,7 +447788,7 @@ SCANG is an R package for performing a flexible and computationally efficient sc
     biotools:primaryContact "David Labonte" .
 
 <https://bio.tools/scapa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3170,
         edam:topic_3512 ;
@@ -423517,8 +447803,32 @@ SCANG is an R package for performing a flexible and computationally efficient sc
     sc:name "scAPA" ;
     sc:url "https://github.com/ElkonLab/scAPA" .
 
+<https://bio.tools/scapaatlas> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0659,
+        edam:topic_2229,
+        edam:topic_3170,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAB917>,
+        "pmcid:PMC8728290",
+        "pubmed:34643729" ;
+    sc:description "An atlas of alternative polyadenylation across cell types in human and mouse." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_0463,
+        edam:operation_3463,
+        edam:operation_3901 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "scAPAatlas" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://www.bioailab.com:3838/scAPAatlas" .
+
 <https://bio.tools/scapadb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -423541,7 +447851,7 @@ SCANG is an R package for performing a flexible and computationally efficient sc
     sc:url "http://www.bmibig.cn/scAPAdb" .
 
 <https://bio.tools/scapatrap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_3170,
         edam:topic_3308,
@@ -423563,7 +447873,7 @@ Fasta and chromosome length files for human (hg19) or (and) mouse (mm10).""" ;
     sc:url "https://github.com/BMILAB/scAPAtrap" .
 
 <https://bio.tools/scapd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
@@ -423583,7 +447893,7 @@ Fasta and chromosome length files for human (hg19) or (and) mouse (mm10).""" ;
     biotools:primaryContact "Jiang Qian" .
 
 <https://bio.tools/scapp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0196,
         edam:topic_3174,
@@ -423601,7 +447911,7 @@ SCAPP assembles plasmids from metagenomic assembly graphs.""" ;
     sc:url "https://github.com/Shamir-Lab/SCAPP" .
 
 <https://bio.tools/scapture> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0769,
@@ -423625,7 +447935,7 @@ SCAPP assembles plasmids from metagenomic assembly graphs.""" ;
     sc:url "https://github.com/YangLab/SCAPTURE" .
 
 <https://bio.tools/scarches> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0121,
         edam:topic_3173,
@@ -423640,7 +447950,7 @@ SCAPP assembles plasmids from metagenomic assembly graphs.""" ;
     sc:url "https://github.com/theislab/scarches" .
 
 <https://bio.tools/scarf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0622 ;
     sc:citation "pubmed:19129211" ;
@@ -423655,7 +447965,7 @@ SCAPP assembles plasmids from metagenomic assembly graphs.""" ;
     biotools:primaryContact "Dlugosch lab" .
 
 <https://bio.tools/scarf-genomics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Suite" ;
     sc:applicationSubCategory edam:topic_0102,
@@ -423674,7 +447984,7 @@ SCAPP assembles plasmids from metagenomic assembly graphs.""" ;
         "Göran Karlsson" .
 
 <https://bio.tools/scarlet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0199,
         edam:topic_2229,
@@ -423691,7 +448001,7 @@ SCARLET (Single-cell Algorithm for Reconstructing Loss-supported Evolution of Tu
     sc:url "http://github.com/raphael-group/scarlet" .
 
 <https://bio.tools/scarpa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_2885,
@@ -423710,8 +448020,31 @@ SCARLET (Single-cell Algorithm for Reconstructing Loss-supported Evolution of Tu
     sc:url "http://compbio.cs.toronto.edu/hapsembler/scarpa.html" ;
     biotools:primaryContact "Nilgun Donmez" .
 
+<https://bio.tools/scasa> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_3170,
+        edam:topic_3360,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAB807>,
+        "pmcid:PMC8826380",
+        "pubmed:34864849" ;
+    sc:description "Isoform-level Quantification for Single-Cell RNA Sequencing." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_3198,
+        edam:operation_3799 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "Scasa" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://github.com/eudoraleer/Scasa_Paper/wiki> ;
+    sc:url "https://github.com/eudoraleer/scasa" .
+
 <https://bio.tools/scask> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2229,
         edam:topic_3170,
@@ -423727,7 +448060,7 @@ The scASK is a novel and robust ensemble framework that is especially suited for
     sc:url "https://github.com/liubo2358/scASKcmd" .
 
 <https://bio.tools/scater> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3170,
@@ -423747,7 +448080,7 @@ The scASK is a novel and robust ensemble framework that is especially suited for
     biotools:primaryContact "Davis McCarthy" .
 
 <https://bio.tools/scats> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3308,
         edam:topic_3320,
@@ -423767,8 +448100,25 @@ A statistical tool to detect differential alternative splicing events using sing
     sc:name "SCATS" ;
     sc:url "https://github.com/huyustats/SCATS" .
 
+<https://bio.tools/scatterhatch> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_2229 ;
+    sc:citation <https://doi.org/10.1101/2021.10.07.463279> ;
+    sc:description "The goal of scatterHatch is to create scatter plots that visually distinguish groups of data using color and texture in sparse or dense datasets." ;
+    sc:featureList edam:operation_2939,
+        edam:operation_2940,
+        edam:operation_3432 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Other" ;
+    sc:name "scatterHatch" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/FertigLab/scatterHatch" .
+
 <https://bio.tools/scattermore> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:description "R library for fast plotting of scatterplots with millions of points" ;
     sc:featureList edam:operation_2940 ;
@@ -423778,7 +448128,7 @@ A statistical tool to detect differential alternative splicing events using sing
     sc:url "https://github.com/exaexa/scattermore" .
 
 <https://bio.tools/scb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0154,
         edam:topic_0654,
@@ -423797,8 +448147,31 @@ This repository contains all code used for constructing Sequence Compression Ben
     sc:name "SCB" ;
     sc:url "http://kirr.dyndns.org/sequence-compression-benchmark/" .
 
+<https://bio.tools/scbasset> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0749,
+        edam:topic_3169,
+        edam:topic_3173,
+        edam:topic_3474,
+        edam:topic_3940 ;
+    sc:citation <https://doi.org/10.1038/S41592-022-01562-8>,
+        "pubmed:35941239" ;
+    sc:description "Sequence-based modeling of single-cell ATAC-seq using convolutional neural networks." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_3436,
+        edam:operation_3891,
+        edam:operation_3927 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Apache-2.0" ;
+    sc:name "scBasset" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/calico/scBasset" .
+
 <https://bio.tools/scbatch> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0099,
         edam:topic_0203,
@@ -423821,7 +448194,7 @@ scBatch utilizes previous correction on sample distance matrices, such as QuantN
     sc:url "http://github.com/tengfei-emory/scBatch" .
 
 <https://bio.tools/scbean> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_2229,
@@ -423844,7 +448217,7 @@ scBatch utilizes previous correction on sample distance matrices, such as QuantN
     sc:url "https://github.com/jhu99/scbean" .
 
 <https://bio.tools/scc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2229,
         edam:topic_3170,
@@ -423861,14 +448234,14 @@ SCC (scRNA-seq complementation). SCC can recover the gene expression of scRNA-se
 
 <https://bio.tools/sccaller> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3003" ;
+            sc:name "Sequence variations" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_3673 ;
@@ -423884,8 +448257,31 @@ SCC (scRNA-seq complementation). SCC can recover the gene expression of scRNA-se
     sc:url "https://github.com/biosinodx/SCcaller/" ;
     biotools:primaryContact "Xiao Dong" .
 
+<https://bio.tools/sccan> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0099,
+        edam:topic_0605,
+        edam:topic_2229,
+        edam:topic_3170,
+        edam:topic_3676 ;
+    sc:citation <https://doi.org/10.1038/S41598-022-14218-6>,
+        "pmcid:PMC9206025",
+        "pubmed:35715568" ;
+    sc:description "Single-cell clustering using autoencoder and network fusion." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_3432 ;
+    sc:isAccessibleForFree true ;
+    sc:license "LGPL-2.0" ;
+    sc:name "scCAN" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://cran.r-project.org/web/packages/scCAN/scCAN.pdf> ;
+    sc:url "https://cran.r-project.org/package=scCAN" .
+
 <https://bio.tools/sccatch> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3055,
         edam:topic_3170,
@@ -423909,7 +448305,7 @@ Recent advance in single-cell RNA sequencing (scRNA-seq) has enabled large-scale
     sc:url "https://github.com/ZJUFanLab/scCATCH" .
 
 <https://bio.tools/scclassifr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2229,
         edam:topic_3170 ;
@@ -423922,7 +448318,7 @@ The scClassifR package automatically classifies cells in scRNA-seq datasets. It
     sc:url "https://github.com/grisslab/scClassifR" .
 
 <https://bio.tools/scclusteval> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_2229,
         edam:topic_3170,
@@ -423943,7 +448339,7 @@ The goal of scclusteval(Single Cell Cluster Evaluation) is to evaluate the singl
     sc:url "https://github.com/crazyhottommy/scclusteval" .
 
 <https://bio.tools/sccmecfinder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3301,
@@ -423963,7 +448359,7 @@ The goal of scclusteval(Single Cell Cluster Evaluation) is to evaluate the singl
         "Technical support" .
 
 <https://bio.tools/sccoda> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0157,
         edam:topic_2229,
@@ -423983,8 +448379,28 @@ This repository contains the code that was used to produce the results and plots
     sc:name "scCODA" ;
     sc:url "https://github.com/theislab/scCODA" .
 
+<https://bio.tools/sccode> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0602,
+        edam:topic_2229,
+        edam:topic_3170 ;
+    sc:citation <https://doi.org/10.1101/2021.11.18.469072> ;
+    sc:description "An R package for personalized differentially expressed gene detection on single-cell RNA-sequencing data." ;
+    sc:featureList edam:operation_2454,
+        edam:operation_3223,
+        edam:operation_3695 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "scCODE" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/XZouProjects/scCODE" .
+
 <https://bio.tools/scconnect> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0602,
@@ -424007,7 +448423,7 @@ This repository contains the code that was used to produce the results and plots
     sc:url "https://github.com/JonETJakobsson/scConnect" .
 
 <https://bio.tools/scconsensus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_2229,
         edam:topic_3170,
@@ -424023,8 +448439,33 @@ An approach combining semi-supervised and unsupervised clustering for cell type
     sc:name "scConsensus" ;
     sc:url "https://github.com/prabhakarlab/scConsensus" .
 
+<https://bio.tools/sccorr> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0622,
+        edam:topic_2229,
+        edam:topic_3170,
+        edam:topic_3295 ;
+    sc:citation <https://doi.org/10.1186/S12864-021-08235-4>,
+        "pmcid:PMC8740455",
+        "pubmed:34996359" ;
+    sc:description "An R package for A graph-based k-partitioning approach for single-cell analysis" ;
+    sc:featureList edam:operation_0314,
+        edam:operation_2436,
+        edam:operation_3432,
+        edam:operation_3463,
+        edam:operation_3766 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "scCorr" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/CBIIT-CGBB/scCorr" .
+
 <https://bio.tools/scct> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2533,
         edam:topic_3053,
@@ -424039,7 +448480,7 @@ An approach combining semi-supervised and unsupervised clustering for cell type
     sc:url "https://github.com/wavefancy/scct" .
 
 <https://bio.tools/scda> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0625,
@@ -424059,8 +448500,33 @@ An approach combining semi-supervised and unsupervised clustering for cell type
     sc:softwareHelp <https://github.com/zccqq/scDA> ;
     sc:url "https://github.com/ZCCQQWork/scDA" .
 
+<https://bio.tools/scdali> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0199,
+        edam:topic_0625,
+        edam:topic_2229,
+        edam:topic_3170,
+        edam:topic_3295 ;
+    sc:citation <https://doi.org/10.1186/S13059-021-02593-8>,
+        "pmcid:PMC8734213",
+        "pubmed:34991671" ;
+    sc:description "scDALI (single-cell differential allelic imbalance) is a statistical model and analysis framework that leverages allele-specific analyses of single-cell data to decode cell-state-specific genetic regulation." ;
+    sc:featureList edam:operation_0487,
+        edam:operation_3196,
+        edam:operation_3799,
+        edam:operation_3802,
+        edam:operation_3891 ;
+    sc:isAccessibleForFree true ;
+    sc:license "BSD-3-Clause" ;
+    sc:name "scDALI" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://pmbio.github.io/scdali/index" .
+
 <https://bio.tools/scdart> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_2229,
@@ -424081,7 +448547,7 @@ An approach combining semi-supervised and unsupervised clustering for cell type
     sc:url "https://github.com/PeterZZQ/scDART" .
 
 <https://bio.tools/scdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_2640,
         edam:topic_2885,
@@ -424101,7 +448567,7 @@ Stomach cancer (SC) is a type of cancer, which is derived from the stomach mucou
     sc:url "http://www.stomachcancerdb.org/" .
 
 <https://bio.tools/scdd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3170 ;
     sc:citation <https://doi.org/10.1186/s13059-016-1077-y> ;
@@ -424122,7 +448588,7 @@ Stomach cancer (SC) is a type of cancer, which is derived from the stomach mucou
     biotools:primaryContact "Keegan Korthauer" .
 
 <https://bio.tools/scde> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -424142,7 +448608,7 @@ Stomach cancer (SC) is a type of cancer, which is derived from the stomach mucou
     biotools:primaryContact "Jean Fan" .
 
 <https://bio.tools/scde_discovery> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0219,
         edam:topic_0602,
@@ -424164,8 +448630,30 @@ Stomach cancer (SC) is a type of cancer, which is derived from the stomach mucou
     sc:url "http://discovery.hsci.harvard.edu/" ;
     biotools:primaryContact "SCDE Support" .
 
+<https://bio.tools/scdeconv> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0099,
+        edam:topic_0654,
+        edam:topic_3170,
+        edam:topic_3295,
+        edam:topic_3308 ;
+    sc:citation <https://doi.org/10.1093/BIB/BBAC150>,
+        "pubmed:35453146" ;
+    sc:description "An R package to deconvolve bulk DNA methylation data with scRNA-seq data and paired bulk RNA-DNA methylation data." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_3435,
+        edam:operation_3629 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "scDeconv" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/yuabrahamliu/scDeconv" .
+
 <https://bio.tools/scdeepsort> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3170,
         edam:topic_3308,
@@ -424184,7 +448672,7 @@ Recent advance in single-cell RNA sequencing (scRNA-seq) has enabled large-scale
     sc:url "https://github.com/ZJUFanLab/scDeepSort" .
 
 <https://bio.tools/scdetect> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0203,
@@ -424206,7 +448694,7 @@ Recent advance in single-cell RNA sequencing (scRNA-seq) has enabled large-scale
     sc:url "https://github.com/IVDgenomicslab/scDetect/" .
 
 <https://bio.tools/scdha> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0099,
@@ -424230,8 +448718,54 @@ The scDHA package is a complete pipeline for single-cell RNA sequencing (scRNA-s
     sc:name "scDHA" ;
     sc:url "http://scdha.tinnguyen-lab.com/" .
 
+<https://bio.tools/scdior> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0749,
+        edam:topic_3170,
+        edam:topic_3308,
+        edam:topic_3372,
+        edam:topic_3382 ;
+    sc:citation <https://doi.org/10.1186/S12859-021-04528-3>,
+        "pmcid:PMC8734364",
+        "pubmed:34991457" ;
+    sc:description "scDIOR software was developed for single-cell data transformation between platforms of R and Python based on Hierarchical Data Format Version 5" ;
+    sc:featureList edam:operation_3435,
+        edam:operation_3629,
+        edam:operation_3891 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "scDIOR" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/JiekaiLab/scDIOR" .
+
+<https://bio.tools/scdlc> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0099,
+        edam:topic_0203,
+        edam:topic_3170,
+        edam:topic_3474,
+        edam:topic_3794 ;
+    sc:citation <https://doi.org/10.1186/S12864-022-08715-1>,
+        "pmcid:PMC9281153",
+        "pubmed:35831808" ;
+    sc:description "scDLC is a deep learning classifier (scDLC) for large sample scRNA-seq data, based on the long short-term memory recurrent neural networks (LSTMs). This classifier does not require a prior knowledge on the scRNA-seq data distribution and it is a scale invariant method which does not require a normalization procedure for scRNA-seq data." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_0337,
+        edam:operation_3435 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "scDLC" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/scDLC-code/scDLC" .
+
 <https://bio.tools/scdney> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0157,
         edam:topic_2229,
         edam:topic_3170,
@@ -424247,7 +448781,7 @@ The scDHA package is a complete pipeline for single-cell RNA sequencing (scRNA-s
     sc:url "https://github.com/SydneyBioX/scdney" .
 
 <https://bio.tools/scdoc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2229,
         edam:topic_3170,
@@ -424265,10 +448799,10 @@ Drop-out correction for single cell RNA_seq data.""" ;
 
 <https://bio.tools/scdrake> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3917" ;
-            sc:name "Count matrix" ;
-            sc:sameAs "http://edamontology.org/data_3917" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3917" ;
+            sc:encodingFormat "http://edamontology.org/format_3590" ;
+            sc:name "Count matrix" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_2229,
@@ -424306,7 +448840,7 @@ Thanks to the drake package, all intermediate results can be reused, and the pip
     sc:url "https://bioinfocz.github.io/scdrake" .
 
 <https://bio.tools/scds> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0203,
         edam:topic_3170 ;
@@ -424319,7 +448853,7 @@ Thanks to the drake package, all intermediate results can be reused, and the pip
     sc:url "https://github.com/kostkalab/scds_manuscript" .
 
 <https://bio.tools/scebe> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2269,
         edam:topic_2885,
@@ -424337,7 +448871,7 @@ SCEBE is a R package that conducts high-dimension Genome-Wide Association Study
     sc:url "https://github.com/Myuan2019/SCEBE" .
 
 <https://bio.tools/scec> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -424353,7 +448887,7 @@ SCEBE is a R package that conducts high-dimension Genome-Wide Association Study
     sc:url "http://biomine.ece.ualberta.ca/Structural_Class/SCEC.html" .
 
 <https://bio.tools/scedar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3170,
         edam:topic_3308,
@@ -424376,8 +448910,33 @@ Scedar (Single-cell exploratory data analysis for RNA-Seq) is a reliable and eas
     sc:name "scedar" ;
     sc:url "https://pypi.org/project/scedar" .
 
+<https://bio.tools/scefsc> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_2229,
+        edam:topic_2830,
+        edam:topic_3170,
+        edam:topic_3308,
+        edam:topic_3315 ;
+    sc:citation <https://doi.org/10.1016/J.CSBJ.2022.04.023>,
+        "pmcid:PMC9108753",
+        "pubmed:35615016" ;
+    sc:description "Accurate single-cell RNA-seq data analysis via ensemble consensus clustering based on multiple feature selections." ;
+    sc:featureList edam:operation_3223,
+        edam:operation_3432,
+        edam:operation_3454,
+        edam:operation_3891,
+        edam:operation_3936 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "scEFSC" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/Conan-Bian/scEFSC" .
+
 <https://bio.tools/scellnetor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0203,
         edam:topic_0602,
@@ -424399,7 +448958,7 @@ Scellnetor is a novel clustering tool for scRNA-seq data that takes Scanpy gener
     sc:url "https://exbio.wzw.tum.de/scellnetor/" .
 
 <https://bio.tools/scelvis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_2229,
         edam:topic_3170,
@@ -424418,14 +448977,14 @@ Scellnetor is a novel clustering tool for scRNA-seq data that takes Scanpy gener
 
 <https://bio.tools/scenery> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2082" ;
-            sc:name "Matrix" ;
-            sc:sameAs "http://edamontology.org/data_2082" ] ;
+            sc:additionalType "http://edamontology.org/data_2082" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Matrix" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:encodingFormat "http://edamontology.org/format_3604" ;
+            sc:name "Pathway or network" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0602,
@@ -424453,16 +449012,40 @@ Scellnetor is a novel clustering tool for scRNA-seq data that takes Scanpy gener
     biotools:primaryContact "Giorgos Papoutsoglou",
         "Ioannis Tsamardinos" .
 
+<https://bio.tools/scenhancer> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0749,
+        edam:topic_2229,
+        edam:topic_2885,
+        edam:topic_3173,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAB1032>,
+        "pmcid:PMC8728125",
+        "pubmed:34761274" ;
+    sc:description "The database provides single-cell enhancer annotation in three species, including human (hg19), mouse (mm9), and fly (dm3)." ;
+    sc:featureList edam:operation_0440,
+        edam:operation_2421,
+        edam:operation_3802 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "scEnhancer" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://enhanceratlas.net/scenhancer/" .
+
 <https://bio.tools/scenic> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3112" ;
-            sc:name "Gene expression matrix" ;
-            sc:sameAs "http://edamontology.org/data_3112" ] ;
+            sc:additionalType "http://edamontology.org/data_3112" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Gene expression matrix" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2032" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -424486,7 +449069,7 @@ Scellnetor is a novel clustering tool for scRNA-seq data that takes Scanpy gener
     biotools:primaryContact "Stein Aerts" .
 
 <https://bio.tools/scepath> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3170,
@@ -424503,7 +449086,7 @@ Scellnetor is a novel clustering tool for scRNA-seq data that takes Scanpy gener
     biotools:primaryContact "Qing Nie" .
 
 <https://bio.tools/sceqtl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0625,
         edam:topic_2885,
@@ -424522,7 +449105,7 @@ SCeQTL is an R package that uses zero-inflated negative binomial regression to d
     sc:url "https://github.com/XuegongLab/SCeQTL/" .
 
 <https://bio.tools/scertf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0204,
@@ -424542,7 +449125,7 @@ SCeQTL is an R package that uses zero-inflated negative binomial regression to d
     biotools:primaryContact "Gary D. Stormo" .
 
 <https://bio.tools/scf-writer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3374 ;
@@ -424558,7 +449141,7 @@ SCeQTL is an R package that uses zero-inflated negative binomial regression to d
     biotools:primaryContact "Lucio Cetto" .
 
 <https://bio.tools/scfa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0634,
         edam:topic_2640 ;
@@ -424575,7 +449158,7 @@ Subtyping via Consensus Factor Analysis (SCFA) can efficiently remove noisy sign
     sc:url "http://scfa.tinnguyen-lab.com" .
 
 <https://bio.tools/scfeaturefilter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3170 ;
@@ -424593,8 +449176,25 @@ Subtyping via Consensus Factor Analysis (SCFA) can efficiently remove noisy sign
     sc:url "http://bioconductor.org/packages/release/bioc/html/scFeatureFilter.html" ;
     biotools:primaryContact "Guillaume Devailly" .
 
+<https://bio.tools/scfeatures> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0091,
+        edam:topic_0634,
+        edam:topic_2229 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC590>,
+        "pubmed:36040148" ;
+    sc:description "scFeatures is a tool that generates multi-view representations of single-cell and spatial data through the construction of a total of 17 feature types belonging to the following six categories." ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "scFeatures" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/SydneyBioX/scFeatures" .
+
 <https://bio.tools/scfg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0099,
@@ -424608,7 +449208,7 @@ Subtyping via Consensus Factor Analysis (SCFA) can efficiently remove noisy sign
     sc:url "http://rna-informatics.uga.edu/malmberg/rlmlab/programs/index.html" .
 
 <https://bio.tools/scfind> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3168,
@@ -424629,7 +449229,7 @@ Subtyping via Consensus Factor Analysis (SCFA) can efficiently remove noisy sign
     biotools:primaryContact "Vladimir Kiselev" .
 
 <https://bio.tools/scflow> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0611,
         edam:topic_0659,
@@ -424654,7 +449254,7 @@ Subtyping via Consensus Factor Analysis (SCFA) can efficiently remove noisy sign
     sc:url "https://combiz.github.io/scFlow/" .
 
 <https://bio.tools/scg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_2533,
@@ -424670,8 +449270,47 @@ Subtyping via Consensus Factor Analysis (SCFA) can efficiently remove noisy sign
     sc:softwareHelp <https://bitbucket.org/aroth85/scg/wiki/Usage> ;
     sc:url "http://shahlab.ca/projects/scg/" .
 
+<https://bio.tools/scgad> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0081,
+        edam:topic_2229,
+        edam:topic_3053 ;
+    sc:citation <https://doi.org/10.1101/2021.10.22.465520> ;
+    sc:description "single-cell gene associating domain scores for exploratory analysis of scHi-C data." ;
+    sc:featureList edam:operation_3432,
+        edam:operation_3799,
+        edam:operation_3935 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "scGAD" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://sshen82.github.io/BandNorm/articles/scGAD-tutorial.html" .
+
+<https://bio.tools/scgate> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_2229,
+        edam:topic_3170,
+        edam:topic_3934 ;
+    sc:citation <https://doi.org/10.1093/bioinformatics/btac141>,
+        "pubmed:35258562" ;
+    sc:description "Marker-based purification of cell types from heterogeneous single-cell RNA-seq datasets." ;
+    sc:featureList edam:operation_0314 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "scGate" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://github.com/carmonalab/scGate.demo> ;
+    sc:url "https://github.com/carmonalab/scGate" .
+
 <https://bio.tools/scgcn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3068,
         edam:topic_3308,
@@ -424689,8 +449328,55 @@ This is a TensorFlow implementation of scGCN for leveraging differnt single cell
     sc:name "scGCN" ;
     sc:url "https://github.com/QSong-github/scGCN" .
 
+<https://bio.tools/scgena> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0602,
+        edam:topic_0625,
+        edam:topic_2229,
+        edam:topic_3170 ;
+    sc:citation <https://doi.org/10.3390/BIOENGINEERING9080353>,
+        "pmcid:PMC9405199",
+        "pubmed:36004879" ;
+    sc:description "A Single-Cell Gene Coexpression Network Analysis Framework for Clustering Cell Types and Revealing Biological Mechanisms." ;
+    sc:featureList edam:operation_3196,
+        edam:operation_3432,
+        edam:operation_3463,
+        edam:operation_3557,
+        edam:operation_3766 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "scGENA" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/zpliulab/scGENA" .
+
+<https://bio.tools/scget> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0602,
+        edam:topic_2229,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.1016/J.GPB.2020.11.008>,
+        "pmcid:PMC8864248",
+        "pubmed:34954425" ;
+    sc:description "Predicting Cell Fate Transition During Early Embryonic Development by Single-cell Graph Entropy." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_2436,
+        edam:operation_3463 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "scGET" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/zhongjiayuna/scGET_Project" .
+
 <https://bio.tools/scgmai> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2229,
         edam:topic_2269,
@@ -424706,8 +449392,29 @@ The rapid development of single-cell RNA sequencing (scRNA-Seq) technology provi
     sc:name "scGMAI" ;
     sc:url "https://github.com/QUST-AIBBDRC/scGMAI/" .
 
+<https://bio.tools/scgraph> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0602,
+        edam:topic_2229,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC199>,
+        "pubmed:35394015" ;
+    sc:description "A graph neural network-based approach to automatically identify cell types." ;
+    sc:featureList edam:operation_3436,
+        edam:operation_3501,
+        edam:operation_3927 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "scGraph" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://figshare.com/articles/software/scGraph/17157743" .
+
 <https://bio.tools/scgrnom> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0625,
@@ -424732,8 +449439,26 @@ The rapid development of single-cell RNA sequencing (scRNA-Seq) technology provi
     sc:softwareHelp <https://github.com/daifengwanglab/scGRNom> ;
     sc:url "https://github.com/daifengwanglab/scGRNom" .
 
+<https://bio.tools/scgtm> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_2229,
+        edam:topic_2269 ;
+    sc:citation <https://doi.org/10.1101/2021.11.25.470059> ;
+    sc:description "Single-cell generalized trendmodel (scGTM): a flexible and interpretable model for gene expression along cell pseudotime. This is a Python package for modeling the statistical relationship between pseudotime and gene expression data." ;
+    sc:featureList edam:operation_2495,
+        edam:operation_3659 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "scGTM" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/ElvisCuiHan/scGTM" .
+
 <https://bio.tools/sch-net> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0202,
         edam:topic_0634,
@@ -424747,7 +449472,7 @@ The rapid development of single-cell RNA sequencing (scRNA-Seq) technology provi
     biotools:primaryContact <https://orcid.org/0000-0002-7168-2737> .
 
 <https://bio.tools/schaplotyper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0625,
         edam:topic_0654,
@@ -424765,8 +449490,27 @@ Haplotyping reveals chromosome blocks inherited from parents to in vitro fertili
     sc:name "scHaplotyper" ;
     sc:url "https://github.com/yzqheart/scHaplotyper" .
 
+<https://bio.tools/schc> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_2640,
+        edam:topic_3360,
+        edam:topic_3400,
+        edam:topic_3452 ;
+    sc:citation <https://doi.org/10.7150/JCA.67428>,
+        "pmcid:PMC9174863",
+        "pubmed:35711832" ;
+    sc:description "A new classifier constructed with platelet features for malignant and benign pulmonary nodules based on prospective real-world data." ;
+    sc:featureList edam:operation_2428 ;
+    sc:isAccessibleForFree true ;
+    sc:name "SCHC" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://i.uestc.edu.cn/SCHC" .
+
 <https://bio.tools/schema-health> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_3263,
         edam:topic_3382 ;
@@ -424784,7 +449528,7 @@ schema is a cross-platform mobile application for deploying mHealth monitoring a
     sc:url "https://github.com/schema-app/schema" .
 
 <https://bio.tools/schex> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3170 ;
     sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTZ907>,
@@ -424798,7 +449542,7 @@ The goal of schex is to provide easy plotting of hexagon cell representations of
     sc:url "http://bioconductor.org/packages/release/bioc/html/schex.html" .
 
 <https://bio.tools/schicnorm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_2269,
@@ -424817,12 +449561,31 @@ The goal of schex is to provide easy plotting of hexagon cell representations of
     sc:url "http://dna.cs.miami.edu/scHiCNorm/" ;
     biotools:primaryContact "Zheng Wang" .
 
+<https://bio.tools/schicsrs> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_2229,
+        edam:topic_3168,
+        edam:topic_3306 ;
+    sc:citation <https://doi.org/10.1101/2021.11.09.467824> ;
+    sc:description "A Self-Representation Smoothing Method with Gaussian Mixture Model for Imputing single cell Hi-C Data." ;
+    sc:featureList edam:operation_3432,
+        edam:operation_3436,
+        edam:operation_3557 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "scHiCSRS" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/sl-lin/scHiCSRS.git" .
+
 <https://bio.tools/schicstackl> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0919" ;
-            sc:name "Chromosome report" ;
-            sc:sameAs "http://edamontology.org/data_0919" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0919" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Chromosome report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_2229,
@@ -424844,7 +449607,7 @@ The goal of schex is to provide easy plotting of hexagon cell representations of
     sc:url "http://hww.sdu.edu.cn:8002/scHiCStackL/" .
 
 <https://bio.tools/schictools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3168,
@@ -424862,7 +449625,7 @@ The goal of schex is to provide easy plotting of hexagon cell representations of
     biotools:primaryContact <https://orcid.org/0000-0002-9504-0587> .
 
 <https://bio.tools/schistox> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_2269,
@@ -424880,14 +449643,14 @@ The goal of schex is to provide easy plotting of hexagon cell representations of
 
 <https://bio.tools/schloro> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2974" ;
-            sc:name "Protein sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_2974" ] ;
+            sc:additionalType "http://edamontology.org/data_2974" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence (raw)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2955" ;
-            sc:name "Sequence report" ;
-            sc:sameAs "http://edamontology.org/data_2955" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2955" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Sequence report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0140,
         edam:topic_0780 ;
@@ -424906,7 +449669,7 @@ The goal of schex is to provide easy plotting of hexagon cell representations of
     biotools:primaryContact "Castrense Savojardo" .
 
 <https://bio.tools/schmutzi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2885 ;
     sc:citation <https://doi.org/10.1186/s13059-015-0776-0> ;
@@ -424919,7 +449682,7 @@ The goal of schex is to provide easy plotting of hexagon cell representations of
     sc:url "https://grenaud.github.io/schmutzi/" .
 
 <https://bio.tools/schnapps> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_2229,
         edam:topic_3170,
@@ -424937,7 +449700,7 @@ The goal of schex is to provide easy plotting of hexagon cell representations of
     sc:url "https://c3bi-pasteur-fr.github.io/UTechSCB-SCHNAPPs" .
 
 <https://bio.tools/schnel> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3170,
         edam:topic_3308,
@@ -424959,7 +449722,7 @@ See the notebooks in the Python Parser folder for explanation on the HSNE datast
     sc:url "https://github.com/paulderaadt/HSNE-clustering" .
 
 <https://bio.tools/schot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_2229,
         edam:topic_3170,
@@ -424978,7 +449741,7 @@ Single cell Higher Order Testing (scHOT) is an R package that facilitates testin
     sc:url "https://github.com/MarioniLab/scHOT2019" .
 
 <https://bio.tools/schpl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2229,
@@ -424997,7 +449760,7 @@ Single cell Higher Order Testing (scHOT) is an R package that facilitates testin
     biotools:primaryContact <https://orcid.org/0000-0001-8601-2149> .
 
 <https://bio.tools/sci-phy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0194,
         edam:topic_3168,
@@ -425011,8 +449774,28 @@ Single cell Higher Order Testing (scHOT) is an R package that facilitates testin
     sc:softwareHelp <http://phylogenomics.berkeley.edu/software> ;
     sc:url "http://phylogenomics.berkeley.edu/software" .
 
+<https://bio.tools/sciae> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0634,
+        edam:topic_3170,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1093/BIB/BBAB508>,
+        "pubmed:34913057" ;
+    sc:description "An integrative autoencoder-based ensemble classification framework for single-cell RNA-seq data." ;
+    sc:featureList edam:operation_3799,
+        edam:operation_3891,
+        edam:operation_3937 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "scIAE" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/JGuan-lab/scIAE" .
+
 <https://bio.tools/scibut> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3382 ;
     sc:citation <https://doi.org/10.1016/J.JNEUMETH.2020.108830>,
         "pubmed:32603812" ;
@@ -425023,7 +449806,7 @@ The Schultz Cigarette Burn Toolbox is a series of Python, MATLAB, and Arduino sc
     sc:url "http://www.band-lab.com/scibut" .
 
 <https://bio.tools/scicnv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_2640,
         edam:topic_3170,
@@ -425044,7 +449827,7 @@ Chromosome copy number variations (CNVs) are a near-universal feature of cancer
     sc:url "https://www.github.com/TiedemannLab/sciCNV" .
 
 <https://bio.tools/sciddo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0625,
         edam:topic_3170,
@@ -425062,7 +449845,7 @@ The generation of genome-wide maps of histone modifications using chromatin immu
     sc:url "http://github.com/ptrebert/sciddo" .
 
 <https://bio.tools/scifi-RNA-seq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_3170,
@@ -425082,13 +449865,13 @@ Cell atlas projects and single-cell CRISPR screens hit the limits of current tec
     sc:url "http://scifi-rna-seq.computational-epigenetics.org" .
 
 <https://bio.tools/sciga> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "SCIGA is a software for 10X single cell immunoglobulin repertoires analysis. It uses raw reads or output of Cellranger as input, and performs reads quality control, immunoglobulin sequence assembly, sequence annotation, heavy- and light- chain pairing, computing statistics and visualizing." ;
     sc:name "SCIGA" ;
     sc:url "https://github.com/sciensic/SCIGA" .
 
 <https://bio.tools/scigans> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3170,
         edam:topic_3308,
@@ -425112,7 +449895,7 @@ scIGANs is a computational tool for single-cell RNA-seq imputation and denoise u
     sc:url "https://github.com/xuyungang/scIGANs" .
 
 <https://bio.tools/scikit-activeml> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3474 ;
     sc:citation <https://doi.org/10.20944/PREPRINTS202103.0194.V1> ;
@@ -425125,8 +449908,30 @@ scIGANs is a computational tool for single-cell RNA-seq imputation and denoise u
     sc:url "https://github.com/scikit-activeml/scikit-activeml" ;
     biotools:primaryContact <https://orcid.org/0000-0002-7870-6033> .
 
+<https://bio.tools/scikit-dimension> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_3068,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.3390/E23101368>,
+        "pmcid:PMC8534554",
+        "pubmed:34682092" ;
+    sc:description "A Python Package for Intrinsic Dimension Estimation." ;
+    sc:featureList edam:operation_3435,
+        edam:operation_3891,
+        edam:operation_3935 ;
+    sc:isAccessibleForFree true ;
+    sc:license "BSD-3-Clause" ;
+    sc:name "scikit-dimension" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://scikit-dimension.readthedocs.io/> ;
+    sc:url "https://github.com/j-bac/scikit-dimension" .
+
 <https://bio.tools/scikit-image> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3068,
         edam:topic_3372,
         edam:topic_3382 ;
@@ -425143,8 +449948,27 @@ scIGANs is a computational tool for single-cell RNA-seq imputation and denoise u
     sc:softwareHelp <http://scikit-image.org/docs/dev> ;
     sc:url "http://scikit-image.org" .
 
+<https://bio.tools/scikit-learn> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0092,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.48550/arXiv.1201.0490> ;
+    sc:description "scikit-learn is a Python module for machine learning built on top of SciPy and is distributed under the 3-Clause BSD license." ;
+    sc:featureList edam:operation_2990,
+        edam:operation_3432,
+        edam:operation_3659,
+        edam:operation_3935 ;
+    sc:isAccessibleForFree true ;
+    sc:license "BSD-3-Clause" ;
+    sc:name "scikit-learn" ;
+    sc:softwareHelp <https://scikit-learn.org/stable/faq.html>,
+        <https://scikit-learn.org/stable/user_guide.html#user-guide> ;
+    sc:softwareVersion "1.1.1" ;
+    sc:url "https://scikit-learn.org/stable/" .
+
 <https://bio.tools/scikit-surgery> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_3379,
         edam:topic_3384,
@@ -425161,7 +449985,7 @@ This paper introduces the SciKit-Surgery libraries, designed to enable rapid dev
     sc:url "https://scikit-surgerytutorial01.readthedocs.io/en/latest/" .
 
 <https://bio.tools/sciluigi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0605,
@@ -425183,7 +450007,7 @@ This paper introduces the SciKit-Surgery libraries, designed to enable rapid dev
     biotools:primaryContact "Samuel Lampa" .
 
 <https://bio.tools/scim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_2229,
         edam:topic_3168,
@@ -425202,8 +450026,30 @@ CyTOF data: The sample was profiled with CyTOF using a 41-markers panel designed
     sc:name "SCIM" ;
     sc:url "https://github.com/ratschlab/scim" .
 
+<https://bio.tools/scimc> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0099,
+        edam:topic_3170,
+        edam:topic_3308,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAC317>,
+        "pmcid:PMC9122610",
+        "pubmed:35524568" ;
+    sc:description "A platform for benchmarking comparison and visualization analysis of scRNA-seq data imputation methods." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3223,
+        edam:operation_3557,
+        edam:operation_3891 ;
+    sc:isAccessibleForFree true ;
+    sc:name "scIMC" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://server.wei-group.net/scIMC/" .
+
 <https://bio.tools/scimm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654 ;
@@ -425218,7 +450064,7 @@ CyTOF data: The sample was profiled with CyTOF using a 41-markers panel designed
     sc:url "http://www.cbcb.umd.edu/software/scimm/" .
 
 <https://bio.tools/scimo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3391 ;
     sc:description "SCIMO a prototype of a 2-D Gel Electrophoresis image analysis system. Being a prototype, some errors may be found that we would appreciate to be informed of. Currently, this software detects the protein spots in the gel and will present the area and volume of each spot." ;
@@ -425232,7 +450078,7 @@ CyTOF data: The sample was profiled with CyTOF using a 41-markers panel designed
     sc:url "http://w3.ualg.pt/~aanjos/prototypes.html" .
 
 <https://bio.tools/scintegral> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_2229,
         edam:topic_3170,
@@ -425250,7 +450096,7 @@ scintegral can be installed using pip.""" ;
     sc:url "https://github.com/hanbin973/scIntegral" .
 
 <https://bio.tools/sciope> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0602,
         edam:topic_3474 ;
@@ -425267,14 +450113,12 @@ Scalable inference, optimization and parameter exploration (sciope) is a Python
 
 <https://bio.tools/scipion> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3806" ;
-            sc:name "3D EM Mask" ;
-            sc:sameAs "http://edamontology.org/data_3806" ] ;
+            sc:additionalType "http://edamontology.org/data_3806" ;
+            sc:name "3D EM Mask" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0889" ;
-            sc:name "Structural profile" ;
-            sc:sameAs "http://edamontology.org/data_0889" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0889" ;
+            sc:name "Structural profile" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application",
         "Workbench" ;
@@ -425290,13 +450134,19 @@ Scalable inference, optimization and parameter exploration (sciope) is a Python
     sc:name "Scipion" ;
     sc:operatingSystem "Linux" ;
     sc:provider "National Centre for Biotechnology  CNB-CSIC" ;
-    sc:softwareHelp <https://github.com/I2PC/scipion/wiki> ;
-    sc:softwareVersion "1" ;
-    sc:url "http://scipion.cnb.csic.es/" ;
+    sc:softwareHelp <https://scipion-em.github.io/docs/>,
+        <https://scipion-em.github.io/docs/docs/api/scipion-API.html>,
+        <https://scipion-em.github.io/docs/docs/scipion-modes/how-to-install.html>,
+        <https://scipion-em.github.io/docs/docs/user/user-documentation.html#tutorials> ;
+    sc:softwareVersion "1",
+        "1.2",
+        "2.0",
+        "3.0" ;
+    sc:url "http://scipion.i2pc.es/" ;
     biotools:primaryContact "Scipion" .
 
 <https://bio.tools/scipion_pkpd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_3306,
         edam:topic_3315,
@@ -425319,18 +450169,15 @@ Scalable inference, optimization and parameter exploration (sciope) is a Python
 
 <https://bio.tools/scipion_web_tools> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3806" ;
-            sc:name "3D EM Mask" ;
-            sc:sameAs "http://edamontology.org/data_3806" ],
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:name "Protein structure" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ] ;
+            sc:additionalType "http://edamontology.org/data_3806" ;
+            sc:name "3D EM Mask" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0889" ;
-            sc:name "Structural profile" ;
-            sc:sameAs "http://edamontology.org/data_0889" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0889" ;
+            sc:name "Structural profile" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0081 ;
     sc:citation <https://doi.org/10.1016/j.jsb.2016.04.010> ;
@@ -425349,7 +450196,7 @@ Scalable inference, optimization and parameter exploration (sciope) is a Python
     biotools:primaryContact "Joan" .
 
 <https://bio.tools/scipion_workflow_repository> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0611 ;
@@ -425359,7 +450206,7 @@ Scalable inference, optimization and parameter exploration (sciope) is a Python
     sc:url "http://workflows.scipion.i2pc.es/" .
 
 <https://bio.tools/sciroko> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0654,
@@ -425376,7 +450223,7 @@ Scalable inference, optimization and parameter exploration (sciope) is a Python
     sc:url "http://www.kofler.or.at/bioinformatics/SciRoKo/index.html" .
 
 <https://bio.tools/scirpy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2830,
         edam:topic_3170,
@@ -425397,7 +450244,7 @@ Tutorials — scirpy documentation.""" ;
     sc:url "https://github.com/icbi-lab/scirpy" .
 
 <https://bio.tools/scisi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0602 ;
@@ -425414,8 +450261,31 @@ Tutorials — scirpy documentation.""" ;
     sc:url "http://bioconductor.org/packages/release/bioc/html/ScISI.html" ;
     biotools:primaryContact "Tony Chiang" .
 
+<https://bio.tools/scisorwiz> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0121,
+        edam:topic_2229,
+        edam:topic_3304,
+        edam:topic_3320,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC340>,
+        "pmcid:PMC9237735",
+        "pubmed:35604081" ;
+    sc:description "Visualizing Differential Isoform Expression in Single-Cell Long-Read Data." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3432,
+        edam:operation_3802 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "ScisorWiz" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://github.com/ans4013/ScisorWiz" .
+
 <https://bio.tools/scission-analysis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -425432,7 +450302,7 @@ Tutorials — scirpy documentation.""" ;
     biotools:primaryContact "David Perrais" .
 
 <https://bio.tools/scissor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -425456,7 +450326,7 @@ SCISSOR (shape changes in selecting sample outliers in RNA-seq) aims for unsuper
     sc:url "https://github.com/hyochoi/SCISSOR" .
 
 <https://bio.tools/scissortm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0625,
@@ -425480,7 +450350,7 @@ SCISSOR (shape changes in selecting sample outliers in RNA-seq) aims for unsuper
     sc:url "https://thecailab.com/scissor/" .
 
 <https://bio.tools/scit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0154 ;
@@ -425495,7 +450365,7 @@ SCISSOR (shape changes in selecting sample outliers in RNA-seq) aims for unsuper
     sc:url "http://bioserv.rpbs.jussieu.fr/cgi-bin/SCit" .
 
 <https://bio.tools/scite> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3293,
@@ -425512,7 +450382,7 @@ SCISSOR (shape changes in selecting sample outliers in RNA-seq) aims for unsuper
     biotools:primaryContact "Niko Beerenwinkel" .
 
 <https://bio.tools/scito> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3170,
@@ -425534,7 +450404,7 @@ SCISSOR (shape changes in selecting sample outliers in RNA-seq) aims for unsuper
     sc:url "https://yelabtools.herokuapp.com/scSeqCostCalc/scito.html" .
 
 <https://bio.tools/scitrack> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3307 ;
     sc:description "Library aimed at application developers writing scientific software to support this tracking of scientific computation. The library provides elementary functionality to support logging. The primary capabilities concern generating checksums on input and output files and facilitating logging of the computational environment. If the optional dependency mpiutils is installed, then logging can be done safely in a parallel computation environment." ;
@@ -425549,7 +450419,7 @@ SCISSOR (shape changes in selecting sample outliers in RNA-seq) aims for unsuper
     biotools:primaryContact "Australia" .
 
 <https://bio.tools/sciviewer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2229,
@@ -425569,7 +450439,7 @@ SCISSOR (shape changes in selecting sample outliers in RNA-seq) aims for unsuper
     sc:url "https://github.com/colabobio/sciviewer" .
 
 <https://bio.tools/sclapa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0625,
@@ -425591,7 +450461,7 @@ High variability and dropout rate inherent in scRNA-seq confounds the reliable q
     sc:url "https://github.com/BMILAB/scLAPA" .
 
 <https://bio.tools/sclccellminer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0208,
         edam:topic_2640,
@@ -425608,7 +450478,7 @@ CellMiner Cross Database (CellMinerCDB) is the first web application to allow tr
     sc:url "https://discover.nci.nih.gov/SclcCellMinerCDB" .
 
 <https://bio.tools/scld> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0203,
@@ -425629,8 +450499,29 @@ CellMiner Cross Database (CellMinerCDB) is the first web application to allow tr
     sc:url "http://scld.mcb.uconn.edu" ;
     biotools:primaryContact "Craig E. Nelson" .
 
+<https://bio.tools/sclds2> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_2229,
+        edam:topic_3170,
+        edam:topic_3360 ;
+    sc:citation <https://doi.org/10.1093/BIB/BBAC317>,
+        "pubmed:35914950" ;
+    sc:description "Learning discriminative and structural samples for rare cell types with deep generative model." ;
+    sc:featureList edam:operation_3432,
+        edam:operation_3435,
+        edam:operation_3937 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "scLDS2" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/xkmaxidian/scLDS2" .
+
 <https://bio.tools/scline> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -425651,7 +450542,7 @@ CellMiner Cross Database (CellMinerCDB) is the first web application to allow tr
     sc:url "https://github.com/BMILAB/scLINE" .
 
 <https://bio.tools/sclink> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
         edam:topic_0634,
@@ -425668,7 +450559,7 @@ scLink: Inferring gene networks from single-cell gene expression data.""" ;
     sc:url "https://github.com/Vivianstats/scLink" .
 
 <https://bio.tools/sclm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0634,
         edam:topic_2229,
@@ -425687,7 +450578,7 @@ scLM works with multiple single cell RNA-seq dataset as inputs. It also works wi
     sc:url "https://github.com/QSong-WF/scLM" .
 
 <https://bio.tools/sclpred-ems> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0140,
         edam:topic_0602,
         edam:topic_3474 ;
@@ -425703,7 +450594,7 @@ SCLpred-EMS: Prediction of protein subcellular localization.""" ;
     sc:url "http://distilldeep.ucd.ie/SCLpred2/" .
 
 <https://bio.tools/sclpred-mem> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0140,
         edam:topic_0820,
@@ -425720,8 +450611,28 @@ SCLpred-EMS: Prediction of protein subcellular localization.""" ;
     sc:url "http://distilldeep.ucd.ie/SCLpred-MEM/" ;
     biotools:primaryContact <https://orcid.org/0000-0002-7696-1364> .
 
+<https://bio.tools/sclr> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_2229,
+        edam:topic_3170,
+        edam:topic_3308 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC294>,
+        "pmcid:PMC9191214",
+        "pubmed:35482476" ;
+    sc:description "A method to test dysregulated ligand-receptor interactions from single cell transcriptomics." ;
+    sc:featureList edam:operation_3223,
+        edam:operation_3435 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "scLR" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/cyhsuTN/scLR" .
+
 <https://bio.tools/sclrtc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3170,
@@ -425742,7 +450653,7 @@ SCLpred-EMS: Prediction of protein subcellular localization.""" ;
     sc:url "https://github.com/jianghuaijie/scLRTC" .
 
 <https://bio.tools/sclvm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_3168,
@@ -425757,16 +450668,39 @@ SCLpred-EMS: Prediction of protein subcellular localization.""" ;
     sc:softwareHelp <https://github.com/PMBio/scLVM> ;
     sc:url "https://github.com/PMBio/scLVM" .
 
+<https://bio.tools/scmagic> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0099,
+        edam:topic_0622,
+        edam:topic_2229,
+        edam:topic_3170,
+        edam:topic_3676 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAB1275>,
+        "pmcid:PMC9071478",
+        "pubmed:34986249" ;
+    sc:description "A robust and accurate cell type classifier for single cell RNA-seq data" ;
+    sc:featureList edam:operation_0224,
+        edam:operation_0314,
+        edam:operation_3703 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "scMAGIC" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/TianLab-Bioinfo/scMAGIC" .
+
 <https://bio.tools/scmap> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Gene expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ] ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_2032" ;
+            sc:name "Gene expression data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_3166" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0607,
         edam:topic_2229,
@@ -425789,7 +450723,7 @@ SCLpred-EMS: Prediction of protein subcellular localization.""" ;
         "Vladimir Kiselev" .
 
 <https://bio.tools/scmapa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_3307 ;
     sc:description "Alternative polyadenylation (APA) causes shortening or lengthening of the 3ʹ-untranslated region (3ʹ-UTR), widespread in complex tissues. To detect APA and identify cell-type-specific APA in a multi-cluster setting, we developed a model-based method, scMAPA. The first part of scMAPA is coded as shell scripts, which can 1) divide the aligned read data by the cell cluster[1] and remove PCR duplicates by UMI-tools; 2) Pad the 3'biased reads and convert BAM to Bedgraph file; 3) estimate the abundance of 3ʹ-UTR long and short isoform of genes in each cluster-bulk data using linear regression and quadratic programming implemented in DaPars2. The second part of scMAPA is coded as an R package, which can 4) fit a logistic regression model for each gene and estimate the significance of APA; 5) Identify cluster-specific 3'UTR shortening and lengthening; 6) Do visualization to show the APA dynamics." ;
@@ -425800,7 +450734,7 @@ SCLpred-EMS: Prediction of protein subcellular localization.""" ;
     sc:url "https://github.com/ybai3/scMAPA" .
 
 <https://bio.tools/scmappr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
         edam:topic_0625,
@@ -425820,7 +450754,7 @@ single-cell mapper (scMappR) data repository.""" ;
     sc:url "https://cran.r-project.org/web/packages/scMappR/index.html" .
 
 <https://bio.tools/scmd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0218,
         edam:topic_0621,
@@ -425840,7 +450774,7 @@ single-cell mapper (scMappR) data repository.""" ;
     biotools:primaryContact "Yoshikazu Ohya" .
 
 <https://bio.tools/scmet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0654,
         edam:topic_3170,
@@ -425858,7 +450792,7 @@ Here we introduce scMET, a Bayesian framework for the analysis of single cell DN
     sc:url "https://github.com/andreaskapou/scMET" .
 
 <https://bio.tools/scmeth> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3295 ;
     sc:description "Functions to analyze methylation data can be found here. Some functions are relevant for single cell methylation data but most other functions can be used for any methylation data. Highlight of this workflow is the comprehensive quality control report." ;
@@ -425876,7 +450810,7 @@ Here we introduce scMET, a Bayesian framework for the analysis of single cell DN
     biotools:primaryContact "Divy Kangeyan" .
 
 <https://bio.tools/scmethbank> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0654,
@@ -425900,7 +450834,7 @@ Here we introduce scMET, a Bayesian framework for the analysis of single cell DN
     sc:url "https://ngdc.cncb.ac.cn/methbank/scm/" .
 
 <https://bio.tools/scmfdd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_3307 ;
     sc:citation <https://doi.org/10.1186/s12859-018-2220-4> ;
@@ -425916,7 +450850,7 @@ Here we introduce scMET, a Bayesian framework for the analysis of single cell DN
         "Wen Zhang" .
 
 <https://bio.tools/scmlnet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
         edam:topic_2229,
@@ -425934,7 +450868,7 @@ scMLnet is an R package developed to construct inter-/intracellular multilayer s
     sc:url "https://github.com/SunXQlab/scMLnet" .
 
 <https://bio.tools/scmmtp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0122,
@@ -425951,7 +450885,7 @@ scMLnet is an R package developed to construct inter-/intracellular multilayer s
     sc:url "http://iclab.life.nctu.edu.tw/iclab_webtools/SCMMTP/" .
 
 <https://bio.tools/scmoc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0099,
@@ -425968,7 +450902,7 @@ It is an approach to identify cell clusters from data with co-measurements of sc
     sc:url "https://github.com/meltager/scmoc" .
 
 <https://bio.tools/scmomentum> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3170,
         edam:topic_3308 ;
@@ -425983,7 +450917,7 @@ A method to infer Gene Regulatory Networks (GRNs) and reconstruct developmental
     sc:url "https://github.com/larisa-msoto/scMomentum.git" .
 
 <https://bio.tools/scmontage> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2229,
         edam:topic_3170,
@@ -425999,7 +450933,7 @@ scMontage is a system for searching gene expression databases for similar cells
     sc:url "https://scmontage.stemcellinformatics.org" .
 
 <https://bio.tools/scmpsp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0123,
@@ -426013,8 +450947,119 @@ scMontage is a system for searching gene expression databases for similar cells
     sc:softwareHelp <http://iclab.life.nctu.edu.tw/SCMPSP/> ;
     sc:url "http://iclab.life.nctu.edu.tw/SCMPSP/" .
 
+<https://bio.tools/scmra> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0089,
+        edam:topic_2229,
+        edam:topic_3170 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAB700>,
+        "pubmed:34623390" ;
+    sc:description "scMRA is a robust deep learning method to annotate scRNA-seq data with multiple reference datasets. Single-cell RNA-seq (scRNA-seq) has been widely used to resolve cellular heterogeneity. After collecting scRNA-seq data, the natural next step is to integrate the accumulated data to achieve a common ontology of cell types and states. Thus, an effective and efficient cell-type identification method is urgently needed. Meanwhile, high quality reference data remain a necessity for precise annotation. However, such tailored reference data are always lacking in practice. To address this, we aggregated multiple datasets into a meta-dataset on which annotation is conducted." ;
+    sc:featureList edam:operation_0224,
+        edam:operation_3436 ;
+    sc:name "scMRA" ;
+    sc:url "https://github.com/ddb-qiwang/scMRA-torch" ;
+    biotools:primaryContact <https://orcid.org/0000-0002-9143-1898> .
+
+<https://bio.tools/scmrma> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0099,
+        edam:topic_2229,
+        edam:topic_3170,
+        edam:topic_3308,
+        edam:topic_3360 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAB931>,
+        "pmcid:PMC8789072",
+        "pubmed:34648021" ;
+    sc:description "single cell Multi-Resolution Marker-based Annotation Algorithm" ;
+    sc:featureList edam:operation_0314,
+        edam:operation_3432 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "scMRMA" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/JiaLiVUMC/scMRMA" .
+
+<https://bio.tools/scmthp> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0091,
+        edam:topic_0154,
+        edam:topic_3306,
+        edam:topic_3474,
+        edam:topic_3930 ;
+    sc:citation <https://doi.org/10.3390/PHARMACEUTICS14010122>,
+        "pmcid:PMC8779003",
+        "pubmed:35057016" ;
+    sc:description "A New Approach for Identifying and Characterizing of Tumor-Homing Peptides Using Estimated Propensity Scores of Amino Acids." ;
+    sc:featureList edam:operation_0252,
+        edam:operation_3631,
+        edam:operation_3659 ;
+    sc:isAccessibleForFree true ;
+    sc:name "SCMTHP" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://pmlabstack.pythonanywhere.com/SCMTHP" .
+
+<https://bio.tools/scmtpp> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0128,
+        edam:topic_0154,
+        edam:topic_0736,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1038/S41598-021-03293-W>,
+        "pmcid:PMC8664844",
+        "pubmed:34893688" ;
+    sc:description "A novel sequence-based predictor for identifying and characterizing thermophilic proteins using estimated propensity scores of dipeptides." ;
+    sc:featureList edam:operation_0303,
+        edam:operation_0480,
+        edam:operation_1839 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "SCMTPP" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://pmlabstack.pythonanywhere.com/SCMTPP" .
+
+<https://bio.tools/scname> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0089,
+        edam:topic_0203,
+        edam:topic_0602,
+        edam:topic_2229,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC011>,
+        "pubmed:34999761" ;
+    sc:description "Neighborhood contrastive clustering with ancillary mask estimation for scRNA-seq data." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_3432,
+        edam:operation_3501 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "scNAME" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/aster-ww/scNAME" .
+
 <https://bio.tools/scnet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3063,
         edam:topic_3384 ;
@@ -426025,7 +451070,7 @@ scMontage is a system for searching gene expression databases for similar cells
     sc:url "https://github.com/netflymachine/SCNET" .
 
 <https://bio.tools/scnet-genes> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0625,
@@ -426043,7 +451088,7 @@ scMontage is a system for searching gene expression databases for similar cells
     sc:url "https://github.com/ComputationalSystemsBiology/scNET" .
 
 <https://bio.tools/scnetviz> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -426065,16 +451110,37 @@ scMontage is a system for searching gene expression databases for similar cells
         "Windows" ;
     sc:url "https://www.cgl.ucsf.edu/cytoscape/scNetViz/index.shtml" .
 
+<https://bio.tools/scnic> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Plug-in" ;
+    sc:applicationSubCategory edam:topic_3172,
+        edam:topic_3174,
+        edam:topic_3697 ;
+    sc:citation <https://doi.org/10.22541/AU.165815492.24601086/V1> ;
+    sc:description "Sparse Correlation Network Investigation for Compositional Data." ;
+    sc:featureList edam:operation_3463,
+        edam:operation_3766,
+        edam:operation_3891,
+        edam:operation_3935 ;
+    sc:isAccessibleForFree true ;
+    sc:license "BSD-3-Clause" ;
+    sc:name "SCNIC" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/lozuponelab/SCNIC" .
+
 <https://bio.tools/scnorm> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Gene expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ] ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_2032" ;
+            sc:name "Gene expression data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0928" ;
-            sc:name "Gene expression profile" ;
-            sc:sameAs "http://edamontology.org/data_0928" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0928" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "Gene expression profile" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Plug-in" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -426098,7 +451164,7 @@ scMontage is a system for searching gene expression databases for similar cells
     biotools:primaryContact "Rhonda Bacher" .
 
 <https://bio.tools/scnym> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2229,
@@ -426119,14 +451185,14 @@ scNym is a neural network model for predicting cell types from single cell profi
 
 <https://bio.tools/scoary> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0916" ;
-            sc:name "Gene report" ;
-            sc:sameAs "http://edamontology.org/data_0916" ] ;
+            sc:additionalType "http://edamontology.org/data_0916" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Gene report" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1669" ;
-            sc:name "P-value" ;
-            sc:sameAs "http://edamontology.org/data_1669" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1669" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "P-value" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0085,
         edam:topic_0621,
@@ -426150,7 +451216,7 @@ scNym is a neural network model for predicting cell types from single cell profi
     biotools:primaryContact "Ola Brynildsrud" .
 
 <https://bio.tools/scomap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:citation <https://doi.org/10.15252/msb.20209438>,
         "pmcid:PMC7237818",
         "pubmed:32431014" ;
@@ -426162,7 +451228,7 @@ scNym is a neural network model for predicting cell types from single cell profi
     biotools:primaryContact "Stein Aerts" .
 
 <https://bio.tools/sconce> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_2640,
@@ -426179,7 +451245,7 @@ scNym is a neural network model for predicting cell types from single cell profi
     sc:url "https://github.com/NielsenBerkeleyLab/sconce" .
 
 <https://bio.tools/scone> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0654,
@@ -426193,7 +451259,7 @@ scNym is a neural network model for predicting cell types from single cell profi
     sc:url "http://genetics.bwh.harvard.edu/scone/" .
 
 <https://bio.tools/scone_bioconductor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3168,
@@ -426214,7 +451280,7 @@ scNym is a neural network model for predicting cell types from single cell profi
     biotools:primaryContact "Michael Cole" .
 
 <https://bio.tools/scones> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3053 ;
@@ -426229,7 +451295,7 @@ scNym is a neural network model for predicting cell types from single cell profi
     sc:url "http://www.bsse.ethz.ch/mlcb/research/bioinformatics-and-computational-biology/scones.html" .
 
 <https://bio.tools/sconify> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3474 ;
@@ -426247,7 +451313,7 @@ scNym is a neural network model for predicting cell types from single cell profi
     biotools:primaryContact "Tyler J Burns" .
 
 <https://bio.tools/scooby_domain_prediction> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -426270,7 +451336,7 @@ scNym is a neural network model for predicting cell types from single cell profi
     biotools:primaryContact "Centre for Integrative Bioinformatics VU (IBIVU), Vrije Universiteit" .
 
 <https://bio.tools/scool> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0091 ;
     sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAA924>,
         "pubmed:33135074" ;
@@ -426286,7 +451352,7 @@ Single-cell Hi-C research currently lacks an efficient, easy to use and shareabl
     sc:url "https://github.com/open2c/cooler" .
 
 <https://bio.tools/scop> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -426314,14 +451380,14 @@ Single-cell Hi-C research currently lacks an efficient, easy to use and shareabl
 
 <https://bio.tools/scop3d> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1384" ;
-            sc:name "Sequence alignment (protein)" ;
-            sc:sameAs "http://edamontology.org/data_1384" ] ;
+            sc:additionalType "http://edamontology.org/data_1384" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment (protein)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2992" ;
-            sc:name "Protein structure image" ;
-            sc:sameAs "http://edamontology.org/data_2992" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2992" ;
+            sc:encodingFormat "http://edamontology.org/format_2333" ;
+            sc:name "Protein structure image" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121 ;
@@ -426337,7 +451403,7 @@ Single-cell Hi-C research currently lacks an efficient, easy to use and shareabl
     sc:url "https://github.com/compomics/scop3d" .
 
 <https://bio.tools/scop3p> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -426356,7 +451422,7 @@ Zoom in and zoom out (both with mouse and buttons on the right top corner) to se
     sc:url "https://iomics.ugent.be/scop3p" .
 
 <https://bio.tools/scope> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0204,
@@ -426378,7 +451444,7 @@ Zoom in and zoom out (both with mouse and buttons on the right top corner) to se
     sc:url "http://genie.dartmouth.edu/scope/" .
 
 <https://bio.tools/scope-bootstrapping-roc_areas-errors-two-ways> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3315 ;
     sc:description "Implemented bootstrapping by Monte Carlo sampling with replacement for ROC areas." ;
@@ -426392,7 +451458,7 @@ Zoom in and zoom out (both with mouse and buttons on the right top corner) to se
     biotools:primaryContact "Rex Cheung" .
 
 <https://bio.tools/scope-cheminformatics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0153,
         edam:topic_0625,
@@ -426415,14 +451481,13 @@ To run any of the r scripts provided, clone the repository and open the SCOPE_Li
 
 <https://bio.tools/scope-scrna> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2082" ;
-            sc:name "Matrix" ;
-            sc:sameAs "http://edamontology.org/data_2082" ] ;
+            sc:additionalType "http://edamontology.org/data_2082" ;
+            sc:encodingFormat "http://edamontology.org/format_3590" ;
+            sc:name "Matrix" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3308 ;
@@ -426444,7 +451509,7 @@ To run any of the r scripts provided, clone the repository and open the SCOPE_Li
     sc:url "http://scope.aertslab.org/" .
 
 <https://bio.tools/scope-seer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3315 ;
     sc:description "SCOPE (SEER (Surveillance, Epidemiology, and End Results) Clinical Outcome Prediction Expert) optimizes risk factors using binary fusion with Area of ROC as a metric." ;
@@ -426458,7 +451523,7 @@ To run any of the r scripts provided, clone the repository and open the SCOPE_Li
     biotools:primaryContact "Rex Cheung" .
 
 <https://bio.tools/scope3d> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0081 ;
     sc:author "Lukasz Kreft" ;
@@ -426473,8 +451538,32 @@ To run any of the r scripts provided, clone the repository and open the SCOPE_Li
     sc:url "https://iomics.ugent.be/scop3d/#/home" ;
     biotools:primaryContact "Elien Vandermarliere" .
 
+<https://bio.tools/scope_database> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0623,
+        edam:topic_0736,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAB1054>,
+        <https://doi.org/10.1093/nar/gkt1240>,
+        "pmcid:PMC3965108",
+        "pmcid:PMC8728185",
+        "pubmed:24304899",
+        "pubmed:34850923" ;
+    sc:description "Extended database to facilitate variant interpretation and machine learning." ;
+    sc:featureList edam:operation_2996,
+        edam:operation_3225,
+        edam:operation_3227 ;
+    sc:isAccessibleForFree true ;
+    sc:name "SCOPe" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://scop.berkeley.edu" .
+
 <https://bio.tools/scopeplusplus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654,
@@ -426491,7 +451580,7 @@ To run any of the r scripts provided, clone the repository and open the SCOPE_Li
     sc:url "http://code.google.com/p/scopeplusplus/" .
 
 <https://bio.tools/scopy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0209,
         edam:topic_3343 ;
@@ -426508,7 +451597,7 @@ Scopy (Screnning COmpounds in PYthon), an integrated negative design python libr
     sc:url "https://github.com/kotori-y/Scopy" .
 
 <https://bio.tools/scor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0097,
@@ -426530,7 +451619,7 @@ Scopy (Screnning COmpounds in PYthon), an integrated negative design python libr
     biotools:primaryContact "Peter S. Klosterman" .
 
 <https://bio.tools/score> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
         edam:topic_0659,
@@ -426548,7 +451637,7 @@ Our services require cookies to keep track of your submissions and find your res
     sc:url "http://score.generesearch.ru/services/mirna/" .
 
 <https://bio.tools/score-gene> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0203,
         edam:topic_0769,
@@ -426567,7 +451656,7 @@ Smart Consensus Of RNA Expression pipelines.""" ;
     sc:url "https://github.com/SiWolf/SCORE" .
 
 <https://bio.tools/score-seq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0634,
@@ -426583,29 +451672,8 @@ Smart Consensus Of RNA Expression pipelines.""" ;
     sc:softwareVersion "5.3" ;
     sc:url "http://dlin.web.unc.edu/software/score-seq/" .
 
-<https://bio.tools/score_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0203,
-        edam:topic_0602,
-        edam:topic_0659,
-        edam:topic_3512,
-        edam:topic_3794 ;
-    sc:citation <https://doi.org/10.3389/FGENE.2019.00933>,
-        "pmcid:PMC6792129",
-        "pubmed:31649721" ;
-    sc:description """Comprehensive Analysis of Human microRNA-mRNA Interactome.
-
-Our services require cookies to keep track of your submissions and find your results. Submissions expire after 24 hours.
-
-||| NAME (score) SIMILAR TO (PUB. DIFFERENT) bio.tools/SCORE (SCORE).
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'microRNA-mRNA'""" ;
-    sc:featureList edam:operation_0463,
-        edam:operation_3792 ;
-    sc:name "score_autogenerated" ;
-    sc:url "http://score.generesearch.ru/services/mirna/" .
-
 <https://bio.tools/scorecons> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1002/prot.10146> ;
@@ -426623,7 +451691,7 @@ Our services require cookies to keep track of your submissions and find your res
     biotools:primaryContact "Roman Laskowski" .
 
 <https://bio.tools/scoregene> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btg487> ;
@@ -426638,7 +451706,7 @@ Our services require cookies to keep track of your submissions and find your res
     sc:url "http://www.cs.huji.ac.il/labs/compbio/scoregenes/" .
 
 <https://bio.tools/scoreinvhap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_2885,
@@ -426657,7 +451725,7 @@ Our services require cookies to keep track of your submissions and find your res
     biotools:primaryContact "Carlos Ruiz" .
 
 <https://bio.tools/scorepochs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3361 ;
     sc:citation <https://doi.org/10.1101/2020.05.26.116434> ;
     sc:description """a computer-aided scoring tool for resting-state M/EEG epochs.
@@ -426671,7 +451739,7 @@ Scorepochs aims to represent a simple tool for automatic scoring of resting-stat
     sc:url "https://github.com/matteogithub/scorepochs" .
 
 <https://bio.tools/scoria> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0154,
@@ -426690,7 +451758,7 @@ Scorepochs aims to represent a simple tool for automatic scoring of resting-stat
     biotools:primaryContact "Jacob D. Durrant" .
 
 <https://bio.tools/scot-sc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3474,
         edam:topic_3940 ;
@@ -426708,7 +451776,7 @@ SCOT is a python tool for performing unsupervised alignment of single-cell multi
     sc:url "https://github.com/rsinghlab/SCOT" .
 
 <https://bio.tools/scotti> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0194,
         edam:topic_0203,
@@ -426726,7 +451794,7 @@ SCOT is a python tool for performing unsupervised alignment of single-cell multi
     sc:url "https://bitbucket.org/nicofmay/scotti/" .
 
 <https://bio.tools/scotty> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0203,
@@ -426742,7 +451810,7 @@ SCOT is a python tool for performing unsupervised alignment of single-cell multi
     sc:url "http://scotty.genetics.utah.edu/" .
 
 <https://bio.tools/scour> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0602,
@@ -426766,7 +451834,7 @@ SCOT is a python tool for performing unsupervised alignment of single-cell multi
     sc:url "http://github.com/gtStyLab/SCOUR" .
 
 <https://bio.tools/scout> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2640,
         edam:topic_3170,
@@ -426789,22 +451857,20 @@ SCOUTS is a tool that quickly finds OUTLIERS in single-cell datasets, especially
 
 <https://bio.tools/scowl> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1042" ;
-            sc:name "SCOP sunid" ;
-            sc:sameAs "http://edamontology.org/data_1042" ],
+            sc:additionalType "http://edamontology.org/data_1042" ;
+            sc:name "SCOP sunid" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1127" ;
-            sc:name "PDB ID" ;
-            sc:sameAs "http://edamontology.org/data_1127" ] ;
+            sc:additionalType "http://edamontology.org/data_1127" ;
+            sc:name "PDB ID" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0906" ;
-            sc:name "Protein interaction data" ;
-            sc:sameAs "http://edamontology.org/data_0906" ],
+            sc:additionalType "http://edamontology.org/data_0906" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Protein interaction data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0906" ;
-            sc:name "Protein interaction data" ;
-            sc:sameAs "http://edamontology.org/data_0906" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0906" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Protein interaction data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0128 ;
     sc:description "PDB interface interactions at atom, residue and domain level. The database contains protein interfaces and residue-residue interactions formed by structural units and interacting solvent." ;
@@ -426814,7 +451880,7 @@ SCOUTS is a tool that quickly finds OUTLIERS in single-cell datasets, especially
     biotools:primaryContact "Webmaster" .
 
 <https://bio.tools/scpipe> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3168,
@@ -426836,8 +451902,26 @@ SCOUTS is a tool that quickly finds OUTLIERS in single-cell datasets, especially
     sc:url "http://bioconductor.org/packages/release/bioc/html/scPipe.html" ;
     biotools:primaryContact "Luyi Tian" .
 
+<https://bio.tools/scpm-net> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_2640,
+        edam:topic_3384,
+        edam:topic_3452,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1016/J.MEDIA.2021.102287>,
+        "pubmed:34731775" ;
+    sc:description "An anchor-free 3D lung nodule detection network using sphere representation and center points matching." ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "SCPM-Net" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/HiLab-git/SCPM-Net" .
+
 <https://bio.tools/scpnmf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3170,
@@ -426859,7 +451943,7 @@ SCOUTS is a tool that quickly finds OUTLIERS in single-cell datasets, especially
     sc:url "https://github.com/JSB-UCLA/scPNMF" .
 
 <https://bio.tools/scpower> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3170,
@@ -426877,8 +451961,28 @@ SCOUTS is a tool that quickly finds OUTLIERS in single-cell datasets, especially
     sc:url "http://scpower.helmholtz-muenchen.de/" ;
     biotools:primaryContact <https://orcid.org/0000-0002-5612-1720> .
 
+<https://bio.tools/scpregan> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0099,
+        edam:topic_0203,
+        edam:topic_2229 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC357>,
+        "pubmed:35639705" ;
+    sc:description "Deep generative model for predicting the response of single cell expression to perturbation." ;
+    sc:featureList edam:operation_0490,
+        edam:operation_3435,
+        edam:operation_3927 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "scPreGAN" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/JaneJiayiDong/scPreGAN" .
+
 <https://bio.tools/scpretrain> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_2229,
         edam:topic_3474 ;
@@ -426894,7 +451998,7 @@ Rapidly generated scRNA-seq datasets enable us to understand cellular difference
     sc:url "https://github.com/ruiyi-zhang/scPretrain" .
 
 <https://bio.tools/scprognosis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0634,
         edam:topic_2640,
@@ -426911,7 +452015,7 @@ Rapidly generated scRNA-seq datasets enable us to understand cellular difference
     sc:url "https://github.com/XiaomeiLi1/scPrognosis" .
 
 <https://bio.tools/scpsrm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0154,
@@ -426932,7 +452036,7 @@ Rapidly generated scRNA-seq datasets enable us to understand cellular difference
     biotools:primaryContact "Alan M Moses" .
 
 <https://bio.tools/scqcut> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3170,
@@ -426952,8 +452056,30 @@ Rapidly generated scRNA-seq datasets enable us to understand cellular difference
         "Windows" ;
     sc:url "https://github.com/mary77/scQcut" .
 
+<https://bio.tools/scquest> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0091,
+        edam:topic_0121,
+        edam:topic_0634,
+        edam:topic_2640,
+        edam:topic_3934 ;
+    sc:citation <https://doi.org/10.1016/J.XPRO.2022.101578>,
+        "pmcid:PMC9307583",
+        "pubmed:35880127" ;
+    sc:description "Quantifying tumor ecosystem heterogeneity from mass or flow cytometry data." ;
+    sc:featureList edam:operation_3435,
+        edam:operation_3799 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "scQUEST" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://ai4scr.github.io/scQUEST" .
+
 <https://bio.tools/scquint> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3173,
@@ -426973,7 +452099,7 @@ Rapidly generated scRNA-seq datasets enable us to understand cellular difference
     biotools:primaryContact <https://orcid.org/0000-0002-0734-9868> .
 
 <https://bio.tools/scr_find> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0082,
@@ -426995,7 +452121,7 @@ Rapidly generated scRNA-seq datasets enable us to understand cellular difference
     biotools:primaryContact "Alessandro Paiardini" .
 
 <https://bio.tools/scran> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2229,
@@ -427016,7 +452142,7 @@ Rapidly generated scRNA-seq datasets enable us to understand cellular difference
     biotools:primaryContact <http://orcid.org/0000-0002-3564-4813> .
 
 <https://bio.tools/scrat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0749,
@@ -427035,7 +452161,7 @@ Rapidly generated scRNA-seq datasets enable us to understand cellular difference
     biotools:primaryContact "Hongkai Ji" .
 
 <https://bio.tools/scratch> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0154,
@@ -427059,7 +452185,7 @@ Rapidly generated scRNA-seq datasets enable us to understand cellular difference
     sc:url "http://scratch.proteomics.ics.uci.edu/explanation.html" .
 
 <https://bio.tools/scratch_protein_predictor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0736,
@@ -427077,7 +452203,7 @@ Rapidly generated scRNA-seq datasets enable us to understand cellular difference
     biotools:primaryContact "Scratch Protein Predictor Support" .
 
 <https://bio.tools/scread> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0634,
         edam:topic_2229,
@@ -427102,7 +452228,7 @@ Search differentially expressed genes.""" ;
     sc:url "https://bmbls.bmi.osumc.edu/scread/" .
 
 <https://bio.tools/screadcounts> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0203,
         edam:topic_3168 ;
@@ -427119,7 +452245,7 @@ SCReadCounts is available as a self-contained binary package for 64-bit Linux sy
     sc:url "https://github.com/HorvathLab/NGS/tree/master/SCReadCounts" .
 
 <https://bio.tools/screed> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3168 ;
@@ -427136,7 +452262,7 @@ SCReadCounts is available as a self-contained binary package for 64-bit Linux sy
     sc:url "https://pypi.org/project/screed/" .
 
 <https://bio.tools/screenbeam> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0659,
@@ -427152,7 +452278,7 @@ SCReadCounts is available as a self-contained binary package for 64-bit Linux sy
     sc:url "https://github.com/jyyu/ScreenBEAM" .
 
 <https://bio.tools/screengarden> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Web application" ;
     sc:applicationSubCategory edam:topic_3168,
@@ -427168,7 +452294,7 @@ SCReadCounts is available as a self-contained binary package for 64-bit Linux sy
     biotools:primaryContact <https://orcid.org/0000-0003-1649-6816> .
 
 <https://bio.tools/screentb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3400 ;
     sc:citation <https://doi.org/10.5588/IJTLD.19.0284>,
         "pubmed:32317059" ;
@@ -427177,7 +452303,7 @@ SCReadCounts is available as a self-contained binary package for 64-bit Linux sy
     sc:url "https://wpro.shinyapps.io/screen_tb/" .
 
 <https://bio.tools/scregulocity> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_2229,
@@ -427199,7 +452325,7 @@ SCReadCounts is available as a self-contained binary package for 64-bit Linux sy
     sc:url "https://github.com/akdess/scReguloCity" .
 
 <https://bio.tools/screpertoire> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0804,
         edam:topic_2640,
         edam:topic_3170,
@@ -427220,7 +452346,7 @@ Single-cell sequencing is an emerging technology in the field of immunology and
     sc:url "https://github.com/ncborcherding/scRepertoire" .
 
 <https://bio.tools/screqtl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library",
         "Workflow" ;
@@ -427242,7 +452368,7 @@ Single-cell sequencing is an emerging technology in the field of immunology and
     sc:url "https://github.com/HorvathLab/NGS/tree/master/scReQTL" .
 
 <https://bio.tools/screwfit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0166 ;
     sc:citation <https://doi.org/10.1016/j.bpc.2009.01.004> ;
@@ -427255,7 +452381,7 @@ Single-cell sequencing is an emerging technology in the field of immunology and
     sc:url "http://dirac.cnrs-orleans.fr/plone/software/screwfit/screwfit/" .
 
 <https://bio.tools/scrfe> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
         edam:topic_0769,
@@ -427278,7 +452404,7 @@ scRFE (single-cell identity definition using random forests and recursive featur
     sc:url "https://github.com/czbiohub/scRFE" .
 
 <https://bio.tools/scribl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0622,
@@ -427296,8 +452422,30 @@ scRFE (single-cell identity definition using random forests and recursive featur
     sc:softwareVersion "1.1.4" ;
     sc:url "http://chmille4.github.com/Scribl/" .
 
+<https://bio.tools/scrip> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0099,
+        edam:topic_3170,
+        edam:topic_3308 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAB824>,
+        "pubmed:34874992" ;
+    sc:description "An accurate simulator for single-cell RNA sequencing data." ;
+    sc:featureList edam:operation_0244,
+        edam:operation_0314,
+        edam:operation_2426,
+        edam:operation_3927 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "SCRIP" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://cran.r-project.org/web/packages/SCRIP/SCRIP.pdf> ;
+    sc:url "https://CRAN.R-project.org/package=SCRIP" .
+
 <https://bio.tools/scripture> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3170,
@@ -427317,7 +452465,7 @@ scRFE (single-cell identity definition using random forests and recursive featur
         "Mitchell Guttman" .
 
 <https://bio.tools/scrmd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0622,
         edam:topic_2229,
@@ -427339,7 +452487,7 @@ scRMD is developed to impute single cell RNA data with dropouts. scRMD assumes t
     sc:url "https://github.com/XiDsLab/scRMD" .
 
 <https://bio.tools/scrna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3304,
         edam:topic_3308,
@@ -427362,8 +452510,14 @@ def recursive_dirichlet(cluster_spec, num_cells,.""" ;
     sc:name "scRNA-Seq" ;
     sc:url "https://github.com/nicococo/scRNA" .
 
+<https://bio.tools/scrnax> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:description "ScRNAX: cross-species transfer of high quality 3’UTR annotation for single cell RNA-Seq" ;
+    sc:name "scRNAx" ;
+    sc:url "https://github.com/bi-compbio/scrnax/" .
+
 <https://bio.tools/scruff> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_2229,
@@ -427386,14 +452540,14 @@ def recursive_dirichlet(cluster_spec, num_cells,.""" ;
 
 <https://bio.tools/scrwl> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ] ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein structure" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein structure" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2275 ;
     sc:citation <https://doi.org/10.1002/prot.22488> ;
@@ -427411,14 +452565,12 @@ def recursive_dirichlet(cluster_spec, num_cells,.""" ;
 
 <https://bio.tools/scry> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0842" ;
-            sc:name "Identifier" ;
-            sc:sameAs "http://edamontology.org/data_0842" ] ;
+            sc:additionalType "http://edamontology.org/data_0842" ;
+            sc:name "Identifier" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0842" ;
-            sc:name "Identifier" ;
-            sc:sameAs "http://edamontology.org/data_0842" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0842" ;
+            sc:name "Identifier" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "SPARQL endpoint",
         "Web API",
@@ -427444,8 +452596,47 @@ def recursive_dirichlet(cluster_spec, num_cells,.""" ;
     sc:url "https://pypi.python.org/pypi/scry" ;
     biotools:primaryContact "Bas Stringer" .
 
+<https://bio.tools/scsampler> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_2229,
+        edam:topic_3170,
+        edam:topic_3308 ;
+    sc:citation <https://doi.org/10.1093/bioinformatics/btac271>,
+        "pubmed:35426898" ;
+    sc:description "scSampler is a Python pacakge for fast diversity-preserving subsampling of large-scale single-cell transcriptomic data." ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "scSampler" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/SONGDONGYUAN1994/scsampler" .
+
+<https://bio.tools/scsemiae> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_2229,
+        edam:topic_3170,
+        edam:topic_3308,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1186/S12859-022-04703-0>,
+        "pmcid:PMC9069784",
+        "pubmed:35513780" ;
+    sc:description "A deep model with semi-supervised learning for single-cell transcriptomics." ;
+    sc:featureList edam:operation_3432,
+        edam:operation_3891,
+        edam:operation_3935 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "scSemiAE" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/PlusoneD/scSemiAE" .
+
 <https://bio.tools/scsemicluster> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3170,
         edam:topic_3315,
@@ -427462,7 +452653,7 @@ The identification of cell types plays an essential role in the analysis of scRN
     sc:url "https://github.com/xuebaliang/scSemiCluster" .
 
 <https://bio.tools/scsensitivegenedefine> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0203,
@@ -427482,8 +452673,32 @@ The identification of cell types plays an essential role in the analysis of scRN
     biotools:primaryContact "Pei Hao",
         "Xiaoming Zhang" .
 
+<https://bio.tools/scseqcomm> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0602,
+        edam:topic_2229,
+        edam:topic_3170,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC036>,
+        "pubmed:35043939" ;
+    sc:description "Identify, quantify and characterize cellular communication from single cell RNA sequencing data with scSeqComm." ;
+    sc:featureList edam:operation_3196,
+        edam:operation_3223,
+        edam:operation_3557,
+        edam:operation_3565,
+        edam:operation_3927 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "scSeqComm" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://sysbiobig.dei.unipd.it/software/#scSeqComm" .
+
 <https://bio.tools/scsgl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3315,
@@ -427503,7 +452718,7 @@ The identification of cell types plays an essential role in the analysis of scRN
     sc:url "https://github.com/Single-Cell-Graph-Learning/scSGL" .
 
 <https://bio.tools/scshaper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_2229,
@@ -427518,8 +452733,38 @@ The identification of cell types plays an essential role in the analysis of scRN
     sc:url "https://github.com/elolab/scshaper" ;
     biotools:primaryContact <https://orcid.org/0000-0001-5648-4532> .
 
+<https://bio.tools/scshapes> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:description "A novel statistical framework for identifying differential distributions in single-cell RNA-sequencing (scRNA-seq) data between treatment conditions by modeling gene expression read counts using generalized linear models (GLMs). Each gene is modelled independently under each treatment condition using the error distributions Poisson (P), Negative Binomial (NB), Zero-inflated Poisson (ZIP) and Zero-inflated Negative Binomial (ZINB) with log link function and model based normalization for differences in sequencing depth. Since all four distributions considered in our framework belong to the same family of distributions, we first perform a Kolmogorov-Smirnov (KS) test to select genes belonging to the family of ZINB distributions. Genes passing the KS test will be then modeled using GLMs. Model selection is done by calculating the Bayesian Information Criterion and likelihood ratio test statistic." ;
+    sc:name "scShapes" ;
+    sc:softwareVersion "1.2.0" ;
+    sc:url "https://github.com/Malindrie/scShapes" .
+
+<https://bio.tools/scsilicon> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0084,
+        edam:topic_2640,
+        edam:topic_2885,
+        edam:topic_3168,
+        edam:topic_3958 ;
+    sc:citation <https://doi.org/10.1186/S12864-022-08566-W>,
+        "pmcid:PMC9092674",
+        "pubmed:35546390" ;
+    sc:description "A tool for synthetic single-cell DNA sequencing data generation." ;
+    sc:featureList edam:operation_0484,
+        edam:operation_3196,
+        edam:operation_3961 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "SCSilicon" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/xikanfeng2/SCSilicon" .
+
 <https://bio.tools/scsim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0199,
         edam:topic_0654,
@@ -427539,7 +452784,7 @@ This is a tool for simulating next-generation sequencing data from a hierarchica
     sc:url "https://github.com/flahertylab/scsim" .
 
 <https://bio.tools/scsimclassify> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2229,
@@ -427561,7 +452806,7 @@ This is a tool for simulating next-generation sequencing data from a hierarchica
     sc:url "https://github.com/digi2002/scSimClassify" .
 
 <https://bio.tools/scsnv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0622,
@@ -427584,7 +452829,7 @@ This is a tool for simulating next-generation sequencing data from a hierarchica
         "Jonathan C. Yeung" .
 
 <https://bio.tools/scso> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0108,
@@ -427603,7 +452848,7 @@ This is a tool for simulating next-generation sequencing data from a hierarchica
         "Falai Chen" .
 
 <https://bio.tools/scsorter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -427623,7 +452868,7 @@ On single-cell RNA-sequencing data, we consider the problem of assigning cells t
     sc:url "https://cran.r-project.org/web/packages/scSorter/index.html" .
 
 <https://bio.tools/scsr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0659 ;
@@ -427642,8 +452887,33 @@ On single-cell RNA-sequencing data, we consider the problem of assigning cells t
         "Christian von Mering",
         "Roger Meier" .
 
+<https://bio.tools/scstem> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_2229,
+        edam:topic_2830,
+        edam:topic_3170,
+        edam:topic_3277 ;
+    sc:citation <https://doi.org/10.1186/S13059-022-02716-9>,
+        "pmcid:PMC9264648",
+        "pubmed:35799304" ;
+    sc:description "Single cell STEM (scSTEM) is a shiny app based R package for visualizing and clustering genes in pseudotime ordered single cell RNA-seq data. scSTEM is a GUI based tool and thus does not require any coding experience." ;
+    sc:featureList edam:operation_0313,
+        edam:operation_0314,
+        edam:operation_0337,
+        edam:operation_3891,
+        edam:operation_3935 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "scSTEM" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/alexQiSong/scSTEM" .
+
 <https://bio.tools/scsvas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0602,
@@ -427667,7 +452937,7 @@ On single-cell RNA-sequencing data, we consider the problem of assigning cells t
     sc:url "https://sc.deepomics.org" .
 
 <https://bio.tools/sctcwhatateam> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3170,
         edam:topic_3308 ;
@@ -427682,7 +452952,7 @@ SCTCwhatateam: Predicting cell locations based on location-marker genes.""" ;
     sc:url "https://github.com/thanhbuu04/SCTCwhatateam" .
 
 <https://bio.tools/sctenifoldknk> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0625,
@@ -427702,7 +452972,7 @@ SCTCwhatateam: Predicting cell locations based on location-marker genes.""" ;
         "Jianhua Z. Huang" .
 
 <https://bio.tools/sctenifoldnet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0602,
         edam:topic_3170,
@@ -427726,14 +452996,14 @@ A workflow based on machine learning methods to construct and compare single-cel
     sc:url "https://github.com/cailab-tamu/scTenifoldNet" .
 
 <https://bio.tools/scthi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "scTHI is an R/Bioconductor package to identify active pairs of ligand-receptors from single cells in order to study,among others, tumor-host interactions. scTHI contains a set of signatures to classify cells from the tumor microenvironment." ;
     sc:name "scTHI" ;
     sc:softwareHelp <https://bioconductor.org/packages/release/bioc/vignettes/scTHI/inst/doc/vignette.html> ;
     sc:url "https://bioconductor.org/packages/release/bioc/html/scTHI.html" .
 
 <https://bio.tools/sctitans> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0203,
@@ -427756,7 +453026,7 @@ A workflow based on machine learning methods to construct and compare single-cel
     sc:url "https://github.com/ZJUFanLab/scTITANS" .
 
 <https://bio.tools/sctpa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2229,
         edam:topic_3170,
@@ -427770,7 +453040,7 @@ A workflow based on machine learning methods to construct and compare single-cel
     sc:url "http://sctpa.bio-data.cn/sctpa" .
 
 <https://bio.tools/sctransform> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2229,
         edam:topic_3170 ;
@@ -427786,7 +453056,7 @@ A workflow based on machine learning methods to construct and compare single-cel
     sc:url "http://github.com/ChristophH/sctransform" .
 
 <https://bio.tools/sctree-clusters> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3308,
         edam:topic_3934 ;
@@ -427808,7 +453078,7 @@ Tree based analysis of single rna-seq clusters.""" ;
     sc:url "http://github.com/jspaezp/sctree" .
 
 <https://bio.tools/sctssr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0203,
         edam:topic_0621,
@@ -427827,8 +453097,33 @@ The scTSSR package has the following R-package dependencies: SAVER, keras, tenso
     sc:name "scTSSR" ;
     sc:url "https://github.com/Zhangxf-ccnu/scTSSR" .
 
+<https://bio.tools/sctype_app> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0625,
+        edam:topic_2229,
+        edam:topic_3071,
+        edam:topic_3170,
+        edam:topic_3308 ;
+    sc:citation <https://doi.org/10.1038/S41467-022-28803-W>,
+        "pmcid:PMC8913782",
+        "pubmed:35273156" ;
+    sc:description "Fully-automated and ultra-fast cell-type identification using specific marker combinations from single-cell transcriptomic data." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_3227,
+        edam:operation_3432,
+        edam:operation_3891 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "ScType" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://sctype.app" .
+
 <https://bio.tools/sctyper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_2229,
         edam:topic_3068,
@@ -427848,7 +453143,7 @@ scTyper is a comprehensive pipeline for the cell typing and scRNA-Seq data analy
     sc:url "https://github.com/omicsCore/scTyper" .
 
 <https://bio.tools/scudo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0623,
@@ -427864,7 +453159,7 @@ scTyper is a comprehensive pipeline for the cell typing and scRNA-Seq data analy
     sc:url "http://www.cosbi.eu/research/prototypes/scudo" .
 
 <https://bio.tools/sculptor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_2275 ;
     sc:citation <https://doi.org/10.1016/j.jsb.2010.11.002> ;
@@ -427881,8 +453176,56 @@ scTyper is a comprehensive pipeline for the cell typing and scRNA-Seq data analy
     sc:softwareVersion "2.1.1" ;
     sc:url "http://sculptor.biomachina.org/" .
 
+<https://bio.tools/scutrquant> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0769,
+        edam:topic_2229,
+        edam:topic_3170,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.1101/2021.11.22.469635> ;
+    sc:description "Quantification of alternative 3′UTR isoforms from single cell RNA-seq data with scUTRquant." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_0315,
+        edam:operation_3799 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "scUTRquant" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://mayrlab.github.io/scUTRquant/> ;
+    sc:url "https://github.com/Mayrlab/scUTRquant" .
+
+<https://bio.tools/scv> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0080,
+        edam:topic_0082,
+        edam:topic_0121,
+        edam:topic_0601,
+        edam:topic_3520 ;
+    sc:citation <https://doi.org/10.1101/2022.01.12.476109> ;
+    sc:description "A web application for protein sequence coverage 3D visualization." ;
+    sc:featureList edam:operation_0474,
+        edam:operation_0564,
+        edam:operation_0570,
+        edam:operation_3642 ;
+    sc:isAccessibleForFree true ;
+    sc:name "SCV" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://www.youtube.com/watch?v=NVoVMHVczKY&ab_channel=XinhaoShao> ;
+    sc:url "http://scv.lab.gy" .
+
 <https://bio.tools/scvae> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2269,
         edam:topic_3170,
@@ -427900,7 +453243,7 @@ scVAE is a command-line tool for modelling single-cell transcript counts using v
     sc:url "https://github.com/scvae/scvae" .
 
 <https://bio.tools/scyn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0160,
         edam:topic_0654,
@@ -427922,7 +453265,7 @@ The recent advance of single-cell copy number variation analysis plays an essent
     sc:url "https://sc.deepomics.org/" .
 
 <https://bio.tools/sczewas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3295,
@@ -427940,18 +453283,18 @@ The recent advance of single-cell copy number variation analysis plays an essent
 
 <https://bio.tools/sda> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3108" ;
-            sc:name "Experimental measurement" ;
-            sc:sameAs "http://edamontology.org/data_3108" ] ;
+            sc:additionalType "http://edamontology.org/data_3108" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Experimental measurement" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ],
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3579" ;
+            sc:name "Plot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0951" ;
-            sc:name "Statistical estimate score" ;
-            sc:sameAs "http://edamontology.org/data_0951" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0951" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Statistical estimate score" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121 ;
     sc:description "This is a Java-application for the statistical analysis of data from 2-Dimensional Difference Gel Electrophoresis (DIGE)." ;
@@ -427967,7 +453310,7 @@ The recent advance of single-cell copy number variation analysis plays an essent
     biotools:primaryContact "PD Dr. Martin Eisenacher" .
 
 <https://bio.tools/sda-simulate> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_2275,
@@ -427981,7 +453324,7 @@ The recent advance of single-cell copy number variation analysis plays an essent
     sc:url "http://mcm.h-its.org/sda7/index.html" .
 
 <https://bio.tools/sdams> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3172 ;
@@ -427998,8 +453341,32 @@ The recent advance of single-cell copy number variation analysis plays an essent
     sc:url "http://bioconductor.org/packages/release/bioc/html/SDAMS.html" ;
     biotools:primaryContact "Yuntong Li" .
 
+<https://bio.tools/sdc> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0602,
+        edam:topic_0625,
+        edam:topic_0659,
+        edam:topic_2640,
+        edam:topic_3295 ;
+    sc:citation <https://doi.org/10.1016/J.CSBJ.2022.02.023>,
+        "pmcid:PMC8897669",
+        "pubmed:35284049" ;
+    sc:description "An integrated database for sex differences in cancer." ;
+    sc:featureList edam:operation_0463,
+        edam:operation_3503,
+        edam:operation_3891 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "SDC" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://sdc.anticancer.xyz" .
+
 <https://bio.tools/sdda> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654,
@@ -428012,7 +453379,7 @@ The recent advance of single-cell copy number variation analysis plays an essent
     sc:url "http://www.stats.gla.ac.uk/~mgupta/publications.htm" .
 
 <https://bio.tools/sdef> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3678 ;
@@ -428026,8 +453393,30 @@ The recent advance of single-cell copy number variation analysis plays an essent
     sc:softwareHelp <https://cran.r-project.org/web/packages/sdef/sdef.pdf> ;
     sc:url "https://cran.r-project.org/web/packages/sdef/index.html" .
 
+<https://bio.tools/sdfconf> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0176,
+        edam:topic_2275,
+        edam:topic_3047 ;
+    sc:citation <https://doi.org/10.1021/ACS.JCIM.1C01051>,
+        "pmcid:PMC8757437",
+        "pubmed:34932340" ;
+    sc:description "sdfconf is a python package aimed to be used as a manipulation and analysis tool when working with .sdf files. High emphasis is on files with multiple conformations of molecules." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3096,
+        edam:operation_3695 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "sdfconf" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://www.utu.fi/sdfconf" .
+
 <https://bio.tools/sdi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0140,
         edam:topic_0154,
         edam:topic_0202,
@@ -428048,7 +453437,7 @@ Database for the subcellular diversity index.""" ;
     sc:url "http://www.cuilab.cn/sdi" .
 
 <https://bio.tools/sdimpute> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -428074,7 +453463,7 @@ Database for the subcellular diversity index.""" ;
     sc:url "https://github.com/Jinsl-lab/SDImpute" .
 
 <https://bio.tools/sdlda> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_0659,
         edam:topic_3474 ;
@@ -428091,7 +453480,7 @@ In this GitHub project, we give a demo to show how SDLDA works. In data_processi
     sc:url "https://github.com/CSUBioGroup/SDLDA" .
 
 <https://bio.tools/sdm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0130,
@@ -428114,7 +453503,7 @@ In this GitHub project, we give a demo to show how SDLDA works. In data_processi
     biotools:primaryContact "ARUN PRASAD PANDURANGAN" .
 
 <https://bio.tools/sdmdata> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_3071 ;
@@ -428132,7 +453521,7 @@ In this GitHub project, we give a demo to show how SDLDA works. In data_processi
     biotools:primaryContact "Xiaoquan Kong" .
 
 <https://bio.tools/sdmtoolbox> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0610,
@@ -428153,7 +453542,7 @@ In this GitHub project, we give a demo to show how SDLDA works. In data_processi
     biotools:primaryContact "Support" .
 
 <https://bio.tools/sdmtune> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_2269,
         edam:topic_3474 ;
@@ -428175,7 +453564,7 @@ User-friendly framework that enables the training and the evaluation of species
     sc:url "https://consbiol-unibern.github.io/SDMtune/" .
 
 <https://bio.tools/sdn2go> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0218,
         edam:topic_0736,
@@ -428196,8 +453585,53 @@ SDNGO is a deep learning model for predicting protein functions using protein se
     sc:name "SDN2GO" ;
     sc:url "https://github.com/Charrick/SDN2GO" .
 
+<https://bio.tools/sdndl-cao> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0089,
+        edam:topic_3063,
+        edam:topic_3376,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1055/S-0041-1735621>,
+        "pmcid:PMC8714298",
+        "pubmed:34610645" ;
+    sc:description "SDNDL (Software Defined Networking Description Language) - CAO (CUREX Asset Discovery Tool) Ontology has been developed to give support to the inclusion of information about devices." ;
+    sc:featureList edam:operation_2422,
+        edam:operation_3283,
+        edam:operation_3436,
+        edam:operation_3559,
+        edam:operation_3761 ;
+    sc:isAccessibleForFree true ;
+    sc:license "CC-BY-3.0" ;
+    sc:name "SDNDL-CAO" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://medal.ctb.upm.es/projects/CUREX/ontologies/sdndlcao/" .
+
+<https://bio.tools/sdp> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0082,
+        edam:topic_0102,
+        edam:topic_2814,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1038/S41598-021-04441-Y>,
+        "pmcid:PMC8764118",
+        "pubmed:35039537" ;
+    sc:description "Scrutinised distance predictor for protein structures" ;
+    sc:featureList edam:operation_0248,
+        edam:operation_0272,
+        edam:operation_0474 ;
+    sc:isAccessibleForFree true ;
+    sc:name "SDP" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://gitlab.com/mahnewton/sdp" .
+
 <https://bio.tools/sdphapinfer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0625,
@@ -428213,7 +453647,7 @@ SDNGO is a deep learning model for predicting protein functions using protein se
     sc:url "http://www.csie.ntu.edu.tw/~kmchao/tools/HapInfer/index.htm#SDPHapInfer" .
 
 <https://bio.tools/sdpmod> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0154,
@@ -428229,7 +453663,7 @@ SDNGO is a deep learning model for predicting protein functions using protein se
     sc:url "http://proline.bic.nus.edu.sg/sdpmod/" .
 
 <https://bio.tools/sdppred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0130,
@@ -428250,7 +453684,7 @@ SDNGO is a deep learning model for predicting protein functions using protein se
     biotools:primaryContact "SDPpred team" .
 
 <https://bio.tools/sdr-imaging> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3318,
         edam:topic_3382 ;
@@ -428270,14 +453704,12 @@ This page describes an iterative Ptychography reconstruction algorithm, termed s
 
 <https://bio.tools/sdrdb> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:name "Protein sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:name "Protein features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:description "Short-chain dehydrogenases/reductases database." ;
@@ -428288,22 +453720,22 @@ This page describes an iterative Ptychography reconstruction algorithm, termed s
 
 <https://bio.tools/sdrf-pipelines> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3113" ;
-            sc:name "Sample annotation" ;
-            sc:sameAs "http://edamontology.org/data_3113" ],
+            sc:additionalType "http://edamontology.org/data_3113" ;
+            sc:encodingFormat "http://edamontology.org/format_3162" ;
+            sc:name "Sample annotation" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3113" ;
-            sc:name "Sample annotation" ;
-            sc:sameAs "http://edamontology.org/data_3113" ] ;
+            sc:additionalType "http://edamontology.org/data_3113" ;
+            sc:encodingFormat "http://edamontology.org/format_3162" ;
+            sc:name "Sample annotation" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ],
+            sc:additionalType "http://edamontology.org/data_3113" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Sample annotation" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3113" ;
-            sc:name "Sample annotation" ;
-            sc:sameAs "http://edamontology.org/data_3113" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -428322,7 +453754,7 @@ This page describes an iterative Ptychography reconstruction algorithm, termed s
     sc:url "https://github.com/bigbio/sdrf-pipelines" .
 
 <https://bio.tools/sdse> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3053,
@@ -428337,7 +453769,7 @@ This page describes an iterative Ptychography reconstruction algorithm, termed s
     sc:url "http://bioinfo2.ugr.es:8080/oliver/sdse/" .
 
 <https://bio.tools/sdsw> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:description "Take a set of aligned FASTA format sequences as input and computes pairwise mismatch values for sliding windows of a given size, with a given step size. This is done for every pair of sequences in the input file, and, in addition, average values across all pairs are calculated. The output is written as tab-delimited text." ;
@@ -428349,7 +453781,7 @@ This page describes an iterative Ptychography reconstruction algorithm, termed s
     sc:url "http://www.famd.me.uk/AGL/AGL_sw.html" .
 
 <https://bio.tools/sdt-pics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0176,
         edam:topic_2229,
@@ -428369,7 +453801,7 @@ This page describes an iterative Ptychography reconstruction algorithm, termed s
     sc:url "https://github.com/wimthiels/SDT-PICS" .
 
 <https://bio.tools/sdtlu> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:citation <https://doi.org/10.3758/S13428-020-01402-7>,
         "pubmed:32700238" ;
     sc:description """An R package for the signal detection analysis of eyewitness lineup data.
@@ -428382,13 +453814,13 @@ In a standard eyewitness lineup scenario, a witness observes a culprit commit a
     sc:url "https://osf.io/mfk4e/" .
 
 <https://bio.tools/sdypools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "Sdy Pools adalah situs yang menampilkan hasil togel sdy 4D tercepat dan paling akurat. Keluaran angka 4D Sydney diambil langsung dari website resminya, jadi angkanya tidak berbeda dengan website resminya. Wla TOP SDY ini dibuat untuk mempermudah para pemain togel Sydney Indonesia dengan menampilkan Live Draw Sydney dari berbagai sumber terpercaya, cepat dan tepat waktu." ;
     sc:name "Sdypools - Sdy Pools - Data Sdy - Keluaran Sdy - Togel Sdy" ;
     sc:url "https://rebrand.ly/daftar-papua4d" .
 
 <https://bio.tools/se-atlas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2815,
         edam:topic_3063,
@@ -428400,7 +453832,7 @@ In a standard eyewitness lineup scenario, a witness observes a culprit commit a
     sc:url "http://www.se-atlas.de" .
 
 <https://bio.tools/seXY> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Script" ;
     sc:applicationSubCategory edam:topic_0654,
@@ -428422,7 +453854,7 @@ In a standard eyewitness lineup scenario, a witness observes a culprit commit a
     biotools:primaryContact "Christopher I. Amos" .
 
 <https://bio.tools/sea> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3308,
@@ -428441,7 +453873,7 @@ In a standard eyewitness lineup scenario, a witness observes a culprit commit a
     biotools:primaryContact "SEA Support" .
 
 <https://bio.tools/sea-archive> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3295 ;
@@ -428456,7 +453888,7 @@ In a standard eyewitness lineup scenario, a witness observes a culprit commit a
     biotools:primaryContact "Zhang Yan" .
 
 <https://bio.tools/seabed> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0092,
@@ -428469,7 +453901,7 @@ In a standard eyewitness lineup scenario, a witness observes a culprit commit a
     biotools:primaryContact "Institute for Research in Biomedicine Barcelona" .
 
 <https://bio.tools/seagrass_zmu_genome> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_3070 ;
     sc:citation <https://doi.org/10.1128/genomeA.00092-16> ;
@@ -428485,7 +453917,7 @@ In a standard eyewitness lineup scenario, a witness observes a culprit commit a
     biotools:primaryContact "Australia" .
 
 <https://bio.tools/seagrasstraitdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3050 ;
     sc:description """SeagrassTraitDB is a global data base of seagrass traits. It integrates world-wide seagrass trait data in one consistent format. SeagrassTraitDB is based on data sets contributed by seagrass scientists. Plant Traits are any morphological, anatomical, biochemical, physiological or phenological feature measurable at the individual level, from the cell to the whole organism.
 The aim of SeagrassTraitDB is to integrate and make available global empirical data of seagrass traits.""" ;
@@ -428495,7 +453927,7 @@ The aim of SeagrassTraitDB is to integrate and make available global empirical d
     sc:url "http://seagrasses.ccmar.ualg.pt/" .
 
 <https://bio.tools/seagull> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0625,
         edam:topic_2269 ;
@@ -428519,7 +453951,7 @@ The lasso, group lasso, and sparse-group lasso are implemented via proximal grad
     sc:url "https://CRAN.R-project.org/package=seagull" .
 
 <https://bio.tools/seal> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3168 ;
@@ -428538,7 +453970,7 @@ The lasso, group lasso, and sparse-group lasso are implemented via proximal grad
     biotools:primaryContact "Luca Pireddu" .
 
 <https://bio.tools/seal-suite> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0654,
@@ -428554,8 +453986,56 @@ The lasso, group lasso, and sparse-group lasso are implemented via proximal grad
     sc:softwareHelp <http://compbio.case.edu/seal/> ;
     sc:url "http://compbio.case.edu/seal/" .
 
+<https://bio.tools/sealnet> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0610,
+        edam:topic_0621,
+        edam:topic_3179,
+        edam:topic_3474,
+        edam:topic_3500 ;
+    sc:citation <https://doi.org/10.1002/ece3.8851>,
+        "pmcid:PMC9047973",
+        "pubmed:35505998" ;
+    sc:description "Facial recognition software for ecological studies of harbor seals." ;
+    sc:featureList edam:operation_2423,
+        edam:operation_3435 ;
+    sc:isAccessibleForFree true ;
+    sc:license "CC-BY-4.0" ;
+    sc:name "SealNet" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/zbirenbaum/SealFaceRecognition" .
+
+<https://bio.tools/seamdock> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_0883" ;
+            sc:encodingFormat "http://edamontology.org/format_1196" ;
+            sc:name "Structure" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_2258,
+        edam:topic_2275,
+        edam:topic_3068,
+        edam:topic_3336 ;
+    sc:citation <https://doi.org/10.3389/FMOLB.2021.716466>,
+        "pmcid:PMC8484321",
+        "pubmed:34604303" ;
+    sc:description "An Interactive and Collaborative Online Docking Resource to Assist Small Compound Molecular Docking." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_0478,
+        edam:operation_4009 ;
+    sc:isAccessibleForFree true ;
+    sc:name "SeamDock" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://bioserv.rpbs.univ-paris-diderot.fr/services/SeamDock/" .
+
 <https://bio.tools/seamote> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654 ;
@@ -428572,7 +454052,7 @@ The lasso, group lasso, and sparse-group lasso are implemented via proximal grad
     sc:url "http://s.tartaglialab.com/new_submission/seamote" .
 
 <https://bio.tools/seance> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_3168,
@@ -428593,7 +454073,7 @@ The lasso, group lasso, and sparse-group lasso are implemented via proximal grad
         "Support" .
 
 <https://bio.tools/seanet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3382,
         edam:topic_3474 ;
@@ -428607,10 +454087,10 @@ The task of single image super-resolution (SISR) is a highly ill-posed inverse p
 
 <https://bio.tools/sear> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2975" ;
-            sc:name "Nucleic acid sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_2975" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2975" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Nucleic acid sequence (raw)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Database portal",
         "Web application" ;
@@ -428629,7 +454109,7 @@ The task of single image super-resolution (SISR) is a highly ill-posed inverse p
     biotools:primaryContact "Will Rowe" .
 
 <https://bio.tools/searchgtr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3168 ;
@@ -428649,18 +454129,18 @@ The task of single image super-resolution (SISR) is a highly ill-posed inverse p
 
 <https://bio.tools/searchgui> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ],
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3244" ;
+            sc:name "Mass spectrometry spectra" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_3247" ;
+            sc:name "Peptide identification" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -428684,37 +454164,14 @@ The task of single image super-resolution (SISR) is a highly ill-posed inverse p
     sc:softwareVersion "2.2.2" ;
     sc:url "http://compomics.github.io/projects/searchgui.html" .
 
-<https://bio.tools/searching_approach_enables> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0154,
-        edam:topic_0611,
-        edam:topic_2275,
-        edam:topic_2814,
-        edam:topic_3297 ;
-    sc:citation <https://doi.org/10.1101/845123> ;
-    sc:description """real time structural search at the scale of the PDB and beyond.
-
-Protein Structure Search Prototype.
-
-For evaluation purposes only. Please send me an email with any bug reports or suggestions.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'Zernike'""" ;
-    sc:featureList edam:operation_0245,
-        edam:operation_0295,
-        edam:operation_0300,
-        edam:operation_2421 ;
-    sc:name "searching approach enables" ;
-    sc:url "http://shape.rcsb.org" .
-
 <https://bio.tools/searchlight2> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3112" ;
-            sc:name "Gene expression matrix" ;
-            sc:sameAs "http://edamontology.org/data_3112" ],
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:name "Expression data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3112" ;
+            sc:name "Gene expression matrix" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Script" ;
     sc:applicationSubCategory edam:topic_0602,
@@ -428741,7 +454198,7 @@ For evaluation purposes only. Please send me an email with any bug reports or su
     sc:url "https://github.com/Searchlight2/Searchlight2" .
 
 <https://bio.tools/searchpks> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0736,
         edam:topic_2275 ;
@@ -428753,7 +454210,7 @@ For evaluation purposes only. Please send me an email with any bug reports or su
     sc:url "http://www.nii.res.in/searchpks.html" .
 
 <https://bio.tools/searchpv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0196,
@@ -428775,7 +454232,7 @@ SearcHPV is a novel approach to identify and assemble human papillomavirus-host
     sc:url "https://github.com/mills-lab/SearcHPV" .
 
 <https://bio.tools/seas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0602,
@@ -428791,16 +454248,39 @@ SearcHPV is a novel approach to identify and assemble human papillomavirus-host
     sc:softwareHelp <http://csbl.bmb.uga.edu/~xizeng/research/seas/> ;
     sc:url "http://csbl.bmb.uga.edu/~xizeng/research/seas/" .
 
+<https://bio.tools/seas_statistical_enrichment> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_2269,
+        edam:topic_3277,
+        edam:topic_3303,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.3389/FDATA.2021.725276>,
+        "pmcid:PMC8481385",
+        "pubmed:34604741" ;
+    sc:description "Statistical Enrichment Analysis of Samples (SEAS): a general-purpose tool to annotate metadata neighborhoods of biological samples." ;
+    sc:featureList edam:operation_2238,
+        edam:operation_3432,
+        edam:operation_3501 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "SEAS" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://aimed-uab.github.io/SEAS/> ;
+    sc:url "https://aimed-lab.shinyapps.io/SEAS/" .
+
 <https://bio.tools/seattlesnps> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1026" ;
-            sc:name "Gene symbol" ;
-            sc:sameAs "http://edamontology.org/data_1026" ] ;
+            sc:additionalType "http://edamontology.org/data_1026" ;
+            sc:name "Gene symbol" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0916" ;
-            sc:name "Gene report" ;
-            sc:sameAs "http://edamontology.org/data_0916" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0916" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Gene report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0625,
@@ -428817,34 +454297,27 @@ SearcHPV is a novel approach to identify and assemble human papillomavirus-host
 
 <https://bio.tools/seaview> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ],
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:name "Sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0872" ;
-            sc:name "Phylogenetic tree" ;
-            sc:sameAs "http://edamontology.org/data_0872" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:name "Sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
+            sc:additionalType "http://edamontology.org/data_0872" ;
+            sc:name "Phylogenetic tree" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1707" ;
-            sc:name "Phylogenetic tree image" ;
-            sc:sameAs "http://edamontology.org/data_1707" ],
+            sc:additionalType "http://edamontology.org/data_1711" ;
+            sc:name "Sequence alignment image" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1711" ;
-            sc:name "Sequence alignment image" ;
-            sc:sameAs "http://edamontology.org/data_1711" ],
+            sc:additionalType "http://edamontology.org/data_0872" ;
+            sc:name "Phylogenetic tree" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ],
+            sc:additionalType "http://edamontology.org/data_1707" ;
+            sc:name "Phylogenetic tree image" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0872" ;
-            sc:name "Phylogenetic tree" ;
-            sc:sameAs "http://edamontology.org/data_0872" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:name "Sequence alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -428870,14 +454343,14 @@ SearcHPV is a novel approach to identify and assemble human papillomavirus-host
 
 <https://bio.tools/sebnif> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ] ;
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:encodingFormat "http://edamontology.org/format_2306" ;
+            sc:name "Sequence features" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:encodingFormat "http://edamontology.org/format_2306" ;
+            sc:name "Sequence features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0659,
@@ -428899,7 +454372,7 @@ SearcHPV is a novel approach to identify and assemble human papillomavirus-host
     sc:url "http://sunlab.lihs.cuhk.edu.hk/sebnif/" .
 
 <https://bio.tools/seca> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2533,
         edam:topic_2885,
@@ -428914,16 +454387,34 @@ SearcHPV is a novel approach to identify and assemble human papillomavirus-host
     sc:softwareHelp <https://neurogenetics.qimrberghofer.edu.au/SECA/> ;
     sc:url "http://neurogenetics.qimrberghofer.edu.au/SECA/" .
 
+<https://bio.tools/secedo> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0199,
+        edam:topic_0654,
+        edam:topic_2229,
+        edam:topic_3168 ;
+    sc:citation <https://doi.org/10.1101/2021.11.08.467510> ;
+    sc:description "SNV-based subclone detection using ultra-low coverage single-cell DNA sequencing." ;
+    sc:featureList edam:operation_3196,
+        edam:operation_3227,
+        edam:operation_3432 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "SECEDO" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/ratschlab/secedo" .
+
 <https://bio.tools/secisaln> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ] ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:name "Nucleic acid sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0869" ;
-            sc:name "Sequence-profile alignment" ;
-            sc:sameAs "http://edamontology.org/data_0869" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0869" ;
+            sc:name "Sequence-profile alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0160 ;
     sc:author "Charles Chapple" ;
@@ -428940,14 +454431,14 @@ SearcHPV is a novel approach to identify and assemble human papillomavirus-host
 
 <https://bio.tools/secisdesign> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Protein sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:author <http://orcid.org/0000-0001-8231-3323>,
@@ -428971,14 +454462,12 @@ SearcHPV is a novel approach to identify and assemble human papillomavirus-host
 
 <https://bio.tools/secisearch3_seblastian> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ] ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:name "Nucleic acid sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:name "Sequence features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3307 ;
     sc:author "Marco Mariotti" ;
@@ -428999,8 +454488,28 @@ SearcHPV is a novel approach to identify and assemble human papillomavirus-host
     sc:url "http://seblastian.crg.es/" ;
     biotools:primaryContact "Didac Santesmasses & Marco Mariotti" .
 
+<https://bio.tools/secnv> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_2640,
+        edam:topic_3168,
+        edam:topic_3958 ;
+    sc:citation <https://doi.org/10.1093/BIB/BBAC264>,
+        "pubmed:35801503" ;
+    sc:description "Resolving single-cell copy number profiling for large datasets." ;
+    sc:featureList edam:operation_3233,
+        edam:operation_3798,
+        edam:operation_3935 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "SeCNV" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/deepomicslab/SeCNV" .
+
 <https://bio.tools/secret-aar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_2830,
         edam:topic_3930,
@@ -429019,14 +454528,14 @@ The secretome contains all the Excreted Secreted (ES) proteins of a cell.""" ;
 
 <https://bio.tools/secretomep> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Protein features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
@@ -429046,7 +454555,7 @@ The secretome contains all the Excreted Secreted (ES) proteins of a cell.""" ;
     biotools:primaryContact "Henrik Nielsen" .
 
 <https://bio.tools/secretsanta> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0140,
         edam:topic_0602,
@@ -429062,7 +454571,7 @@ The secretome contains all the Excreted Secreted (ES) proteins of a cell.""" ;
     biotools:primaryContact "Anna Gogleva" .
 
 <https://bio.tools/securema> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3053,
@@ -429078,7 +454587,7 @@ The secretome contains all the Excreted Secreted (ES) proteins of a cell.""" ;
     sc:url "https://github.com/XieConnect/SecureMA" .
 
 <https://bio.tools/secureseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654,
@@ -429093,14 +454602,14 @@ The secretome contains all the Excreted Secreted (ES) proteins of a cell.""" ;
 
 <https://bio.tools/seda> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0850" ;
-            sc:name "Sequence set" ;
-            sc:sameAs "http://edamontology.org/data_0850" ] ;
+            sc:additionalType "http://edamontology.org/data_0850" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence set" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0850" ;
-            sc:name "Sequence set" ;
-            sc:sameAs "http://edamontology.org/data_0850" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0850" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence set" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0080 ;
@@ -429121,7 +454630,7 @@ The secretome contains all the Excreted Secreted (ES) proteins of a cell.""" ;
     sc:url "http://www.sing-group.org/seda/" .
 
 <https://bio.tools/seder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -429137,7 +454646,7 @@ The secretome contains all the Excreted Secreted (ES) proteins of a cell.""" ;
     sc:url "http://mamiris.com/services.html" .
 
 <https://bio.tools/sedim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0632,
@@ -429159,7 +454668,7 @@ The secretome contains all the Excreted Secreted (ES) proteins of a cell.""" ;
     sc:url "https://github.com/li-shaochuan/SEDIM" .
 
 <https://bio.tools/sedus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3053,
         edam:topic_3299 ;
@@ -429175,10 +454684,9 @@ The secretome contains all the Excreted Secreted (ES) proteins of a cell.""" ;
 
 <https://bio.tools/seealso> a sc:SoftwareApplication ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0958" ;
-            sc:name "Tool metadata" ;
-            sc:sameAs "http://edamontology.org/data_0958" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0958" ;
+            sc:name "Tool metadata" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -429208,7 +454716,7 @@ The secretome contains all the Excreted Secreted (ES) proteins of a cell.""" ;
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/seealso.html" .
 
 <https://bio.tools/seecer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3572 ;
     sc:citation "pubmed:23558750" ;
@@ -429224,7 +454732,7 @@ The secretome contains all the Excreted Secreted (ES) proteins of a cell.""" ;
         "Ziv Bar-Joseph" .
 
 <https://bio.tools/seecite> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0632,
         edam:topic_2885,
@@ -429243,7 +454751,7 @@ SeeCiTe is a novel CNV quality control tool that post-processes output from curr
     sc:url "https://github.com/aksenia/SeeCiTe" .
 
 <https://bio.tools/seed> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3174 ;
     sc:citation "pubmed:21810899" ;
@@ -429258,7 +454766,7 @@ SeeCiTe is a novel CNV quality control tool that post-processes output from curr
     biotools:primaryContact "Thomas Girke" .
 
 <https://bio.tools/seed-eco> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0610,
@@ -429272,7 +454780,7 @@ SeeCiTe is a novel CNV quality control tool that post-processes output from curr
     sc:url "https://github.com/danlbek/Seed" .
 
 <https://bio.tools/seedextractor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0780,
         edam:topic_3382,
@@ -429284,7 +454792,7 @@ SeeCiTe is a novel CNV quality control tool that post-processes output from curr
     sc:url "https://cse.unl.edu/~fzhu/SeedExtractor.zip" .
 
 <https://bio.tools/seedgerm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3382,
         edam:topic_3474,
@@ -429300,14 +454808,14 @@ SeedGerm: automated seed phenotyping. Contribute to Crop-Phenomics-Group/SeedGer
 
 <https://bio.tools/seedgff> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2305" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2305" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3365,
@@ -429326,7 +454834,7 @@ SeedGerm: automated seed phenotyping. Contribute to Crop-Phenomics-Group/SeedGer
     biotools:primaryContact "Galaxy Support Team" .
 
 <https://bio.tools/seedy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_2533 ;
@@ -429345,7 +454853,7 @@ SeedGerm: automated seed phenotyping. Contribute to Crop-Phenomics-Group/SeedGer
     biotools:primaryContact "Colin J. Worby" .
 
 <https://bio.tools/seek> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2259,
@@ -429362,7 +454870,7 @@ SeedGerm: automated seed phenotyping. Contribute to Crop-Phenomics-Group/SeedGer
     biotools:primaryContact "Contact list" .
 
 <https://bio.tools/seek_for_science> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:author "SEEK developers" ;
@@ -429384,13 +454892,14 @@ SeedGerm: automated seed phenotyping. Contribute to Crop-Phenomics-Group/SeedGer
     sc:softwareHelp <https://docs.seek4science.org/help/> ;
     sc:softwareVersion "1",
         "1.11",
-        "1.11.1" ;
+        "1.11.1",
+        "1.12.2" ;
     sc:url "http://seek4science.org/" ;
     biotools:primaryContact "SEEK",
         "SEEK developers" .
 
 <https://bio.tools/seekcrit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_3170,
         edam:topic_3308,
@@ -429416,7 +454925,7 @@ Run testrun.sh to test the installation and the dependencies of seekCRIT and als
     sc:url "https://github.com/UofLBioinformatics/seekCRIT" .
 
 <https://bio.tools/seeker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3168,
         edam:topic_3174,
@@ -429440,7 +454949,7 @@ The MATLAB and Python model types differ in how they represent the DNA sequences
     sc:url "http://seeker.pythonanywhere.com" .
 
 <https://bio.tools/seekr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0128,
@@ -429458,7 +454967,7 @@ The MATLAB and Python model types differ in how they represent the DNA sequences
     biotools:primaryContact "Rommie E. Amaro" .
 
 <https://bio.tools/seemotif> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0160,
@@ -429476,7 +454985,7 @@ The MATLAB and Python model types differ in how they represent the DNA sequences
     sc:url "http://seemotif.csie.ntu.edu.tw" .
 
 <https://bio.tools/segclust2d> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0610,
         edam:topic_3500 ;
@@ -429491,7 +455000,7 @@ The MATLAB and Python model types differ in how they represent the DNA sequences
     sc:url "http://cran.r-project.org/package=segclust2d" .
 
 <https://bio.tools/segcnv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2533,
@@ -429506,7 +455015,7 @@ The MATLAB and Python model types differ in how they represent the DNA sequences
     sc:url "http://dceg.cancer.gov/tools/analysis/segcnv" .
 
 <https://bio.tools/segdgan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3303,
         edam:topic_3384,
         edam:topic_3444 ;
@@ -429526,7 +455035,7 @@ To do the inference, use the test.py file, you can use the following commands li
     sc:url "https://github.com/w3user/SegDGAN" .
 
 <https://bio.tools/segemehl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0654,
@@ -429541,7 +455050,7 @@ To do the inference, use the test.py file, you can use the following commands li
     biotools:primaryContact "segemehl Support" .
 
 <https://bio.tools/segment-liftover> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3071 ;
@@ -429556,8 +455065,21 @@ To do the inference, use the test.py file, you can use the following commands li
     sc:softwareHelp <https://github.com/baudisgroup/segment-liftover/blob/master/manual.md> ;
     sc:url "https://github.com/baudisgroup/segment-liftover" .
 
+<https://bio.tools/segment_hpc> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0602,
+        edam:topic_2259,
+        edam:topic_3307 ;
+    sc:citation <https://doi.org/10.1371/journal.pone.0122192> ;
+    sc:description "A novel, massively parallel computational model of the gut, the Spatially Explicitly General-purpose Model of Enteric Tissue_HPC (SEGMEnT_HPC), which extends an existing model of the gut epithelium, SEGMEnT, in order to create cell-for-cell anatomic scale simulations" ;
+    sc:featureList edam:operation_2426 ;
+    sc:name "SEGMEnT_HPC" ;
+    sc:operatingSystem "Linux" ;
+    sc:url "https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0122192" .
+
 <https://bio.tools/segmentation-blood-vessels-retinal-fundus-images> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -429574,7 +455096,7 @@ To do the inference, use the test.py file, you can use the following commands li
     biotools:primaryContact "Achintha Iroshan" .
 
 <https://bio.tools/segmentation-brain-tumor-mri> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3304,
@@ -429591,7 +455113,7 @@ To do the inference, use the test.py file, you can use the following commands li
     biotools:primaryContact "Chandra Sekhar Ravuri" .
 
 <https://bio.tools/segmentation-evaluatation> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3382 ;
     sc:description "Gets label matrix of a tissue in segmented and ground truth  and returns similarity indices." ;
@@ -429606,7 +455128,7 @@ To do the inference, use the test.py file, you can use the following commands li
     biotools:primaryContact "M. A Balafar" .
 
 <https://bio.tools/segmentation-morphology> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -429623,7 +455145,7 @@ To do the inference, use the test.py file, you can use the following commands li
     biotools:primaryContact "Benjamin I" .
 
 <https://bio.tools/segmentation-nuclei-waahlby> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3070,
@@ -429645,7 +455167,7 @@ To do the inference, use the test.py file, you can use the following commands li
     biotools:primaryContact "Peter Nagy" .
 
 <https://bio.tools/segmentation-nuclei-wahlby> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3070,
@@ -429666,8 +455188,29 @@ To do the inference, use the test.py file, you can use the following commands li
     sc:url "https://www.mathworks.com/matlabcentral/fileexchange/63070-segmentation-of-nuclei-wahlby-algorithm" ;
     biotools:primaryContact "Peter Nagy" .
 
+<https://bio.tools/segmentgeometry> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Plug-in" ;
+    sc:applicationSubCategory edam:topic_0769,
+        edam:topic_3452,
+        edam:topic_3500 ;
+    sc:citation <https://doi.org/10.1093/IOB/OBAC009>,
+        "pmcid:PMC8919404",
+        "pubmed:35291672" ;
+    sc:description "A Tool for Measuring Second Moment of Area in 3D Slicer." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3435,
+        edam:operation_3799 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Other" ;
+    sc:name "SegmentGeometry" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/jmhuie/Slicer-SegmentGeometry" .
+
 <https://bio.tools/segmentor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3304,
         edam:topic_3382 ;
@@ -429687,14 +455230,14 @@ See the wiki for more information on installing and using Segmentor.""" ;
 
 <https://bio.tools/segmentseq> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1383" ;
-            sc:name "Sequence alignment (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1383" ] ;
+            sc:additionalType "http://edamontology.org/data_1383" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Sequence alignment (nucleic acid)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0102,
@@ -429714,7 +455257,7 @@ See the wiki for more information on installing and using Segmentor.""" ;
     biotools:primaryContact "Thomas J. Hardcastle" .
 
 <https://bio.tools/segmer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
@@ -429732,7 +455275,7 @@ See the wiki for more information on installing and using Segmentor.""" ;
     sc:url "http://zhanglab.ccmb.med.umich.edu/SEGMER/" .
 
 <https://bio.tools/segseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0654,
@@ -429749,7 +455292,7 @@ See the wiki for more information on installing and using Segmentor.""" ;
     sc:url "http://www.broadinstitute.org/cgi-bin/cancer/publications/pub_paper.cgi?mode=view&paper_id=182" .
 
 <https://bio.tools/segshow_3d> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3344,
@@ -429767,7 +455310,7 @@ See the wiki for more information on installing and using Segmentor.""" ;
     biotools:primaryContact "Tzu-Ching Wu" .
 
 <https://bio.tools/segsrgan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3384,
         edam:topic_3444,
         edam:topic_3474 ;
@@ -429785,7 +455328,7 @@ This algorithm is based on the method proposed by Chi-Hieu Pham in 2019. More in
     sc:url "http://pypi.org/project/SegSRGAN" .
 
 <https://bio.tools/segtools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0622,
@@ -429803,7 +455346,7 @@ This algorithm is based on the method proposed by Chi-Hieu Pham in 2019. More in
     sc:url "https://www.pmgenomics.ca/hoffmanlab/proj/segtools/" .
 
 <https://bio.tools/segtor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2885 ;
     sc:citation "pubmed:22069465" ;
@@ -429818,18 +455361,18 @@ This algorithm is based on the method proposed by Chi-Hieu Pham in 2019. More in
 
 <https://bio.tools/segway> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3108" ;
-            sc:name "Experimental measurement" ;
-            sc:sameAs "http://edamontology.org/data_3108" ] ;
+            sc:additionalType "http://edamontology.org/data_3108" ;
+            sc:encodingFormat "http://edamontology.org/format_2919" ;
+            sc:name "Experimental measurement" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ],
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_2919" ;
+            sc:name "Annotation track" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_3003" ;
+            sc:name "Annotation track" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0085,
         edam:topic_3173 ;
@@ -429855,7 +455398,7 @@ This algorithm is based on the method proposed by Chi-Hieu Pham in 2019. More in
     sc:url "http://segway.hoffmanlab.org/" .
 
 <https://bio.tools/seirs-epidemic-model> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3305,
@@ -429872,7 +455415,7 @@ This algorithm is based on the method proposed by Chi-Hieu Pham in 2019. More in
     biotools:primaryContact "milan batista" .
 
 <https://bio.tools/seizr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0622,
@@ -429889,7 +455432,7 @@ Studying Epilepsy In Zebrafish using R.""" ;
     sc:url "https://tyson-fuller.shinyapps.io/SEIZR_Tracking_App/" .
 
 <https://bio.tools/selaction> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3524 ;
     sc:citation <https://doi.org/10.1093/jhered/93.6.456>,
@@ -429903,7 +455446,7 @@ Studying Epilepsy In Zebrafish using R.""" ;
     sc:url "http://www.wur.nl/en/Expertise-Services/Chair-groups/Animal-Sciences/Animal-Breeding-and-Genetics-Group/Research/Software.htm" .
 
 <https://bio.tools/seladb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0622,
         edam:topic_3056,
@@ -429923,7 +455466,7 @@ High-throughput sequencing of genomes, exomes, and disease-focused gene panels i
     sc:url "http://intranet.fm.usp.br/sela" .
 
 <https://bio.tools/selansi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0602,
@@ -429941,14 +455484,14 @@ High-throughput sequencing of genomes, exomes, and disease-focused gene panels i
 
 <https://bio.tools/selectbesthit> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:citation <https://doi.org/10.1093/nar/gkw343>,
@@ -429964,7 +455507,7 @@ High-throughput sequencing of genomes, exomes, and disease-focused gene panels i
     biotools:primaryContact "Galaxy Support Team" .
 
 <https://bio.tools/selectboost> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
         edam:topic_3170,
@@ -429990,34 +455533,34 @@ A modeling tool dedicated to biological network modeling.""" ;
 
 <https://bio.tools/selectbytag> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
+            sc:name "Sequence trace" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ],
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_3003" ;
+            sc:name "Annotation track" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1975" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2306" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2305" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1975" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0622 ;
@@ -430036,14 +455579,14 @@ A modeling tool dedicated to biological network modeling.""" ;
 
 <https://bio.tools/selecthitscore> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:citation <https://doi.org/10.1093/nar/gkw343>,
@@ -430060,30 +455603,24 @@ A modeling tool dedicated to biological network modeling.""" ;
 
 <https://bio.tools/selectome> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1868" ;
-            sc:name "Taxon" ;
-            sc:sameAs "http://edamontology.org/data_1868" ],
+            sc:additionalType "http://edamontology.org/data_1868" ;
+            sc:name "Taxon" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1075" ;
-            sc:name "Protein family identifier" ;
-            sc:sameAs "http://edamontology.org/data_1075" ],
+            sc:additionalType "http://edamontology.org/data_0842" ;
+            sc:name "Identifier" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0842" ;
-            sc:name "Identifier" ;
-            sc:sameAs "http://edamontology.org/data_0842" ] ;
+            sc:additionalType "http://edamontology.org/data_1075" ;
+            sc:name "Protein family identifier" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0916" ;
-            sc:name "Gene report" ;
-            sc:sameAs "http://edamontology.org/data_0916" ],
+            sc:additionalType "http://edamontology.org/data_0916" ;
+            sc:name "Gene report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2093" ;
-            sc:name "Data reference" ;
-            sc:sameAs "http://edamontology.org/data_2093" ],
+            sc:additionalType "http://edamontology.org/data_0872" ;
+            sc:name "Phylogenetic tree" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0872" ;
-            sc:name "Phylogenetic tree" ;
-            sc:sameAs "http://edamontology.org/data_0872" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2093" ;
+            sc:name "Data reference" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_3293 ;
     sc:citation <https://doi.org/10.1093/nar/gkt1065>,
@@ -430101,7 +455638,7 @@ A modeling tool dedicated to biological network modeling.""" ;
     sc:url "https://selectome.org/" .
 
 <https://bio.tools/selecton> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0084 ;
     sc:citation "pubmed:15647294",
@@ -430117,7 +455654,7 @@ A modeling tool dedicated to biological network modeling.""" ;
     biotools:primaryContact "SELECTON Support" .
 
 <https://bio.tools/selectpro> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -430132,16 +455669,37 @@ A modeling tool dedicated to biological network modeling.""" ;
     sc:softwareHelp <http://www.igb.uci.edu/~baldig/selectpro_help.html> ;
     sc:url "http://www.igb.uci.edu/~baldig/selectpro.html" .
 
+<https://bio.tools/selenergyperm> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0625,
+        edam:topic_3174,
+        edam:topic_3315,
+        edam:topic_3673,
+        edam:topic_3697 ;
+    sc:citation <https://doi.org/10.3389/FMICB.2022.837396>,
+        "pmcid:PMC8978828",
+        "pubmed:35387076" ;
+    sc:description "A Simultaneous Feature Selection and Compositional Association Test for Detecting Sparse Associations in High-Dimensional Metagenomic Data." ;
+    sc:featureList edam:operation_3557,
+        edam:operation_3891,
+        edam:operation_3936 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "SelEnergyPerm" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/andrew84830813/selEnergyPermR" .
+
 <https://bio.tools/selenoprofiles3> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3494" ;
-            sc:name "DNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3494" ] ;
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:name "DNA sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1276" ;
-            sc:name "Nucleic acid features" ;
-            sc:sameAs "http://edamontology.org/data_1276" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1276" ;
+            sc:name "Nucleic acid features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0160 ;
     sc:author "Marco Mariotti" ;
@@ -430160,7 +455718,7 @@ A modeling tool dedicated to biological network modeling.""" ;
     biotools:primaryContact "Didac Santesmasses & Marco Mariotti" .
 
 <https://bio.tools/selenzyme> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0821,
         edam:topic_3297,
@@ -430177,7 +455735,7 @@ A modeling tool dedicated to biological network modeling.""" ;
     biotools:primaryContact "Pablo Carbonell" .
 
 <https://bio.tools/selestim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2533,
         edam:topic_2885,
@@ -430194,14 +455752,14 @@ A modeling tool dedicated to biological network modeling.""" ;
 
 <https://bio.tools/selex> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1383" ;
-            sc:name "Sequence alignment (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1383" ] ;
+            sc:additionalType "http://edamontology.org/data_1383" ;
+            sc:encodingFormat "http://edamontology.org/format_2000" ;
+            sc:name "Sequence alignment (nucleic acid)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0951" ;
-            sc:name "Statistical estimate score" ;
-            sc:sameAs "http://edamontology.org/data_0951" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0951" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Statistical estimate score" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2269,
@@ -430220,7 +455778,7 @@ A modeling tool dedicated to biological network modeling.""" ;
     biotools:primaryContact "Harmen Bussemaker" .
 
 <https://bio.tools/self-path> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0634,
@@ -430238,7 +455796,7 @@ While high-resolution pathology images lend themselves well to 'data hungry' dee
     sc:url "https://warwick.ac.uk/fac/cross_fac/tia/software/selfpath/" .
 
 <https://bio.tools/selfat-fold> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0130,
         edam:topic_0166,
@@ -430258,7 +455816,7 @@ While high-resolution pathology images lend themselves well to 'data hungry' dee
     sc:url "http://bliulab.net/selfAT_fold/" .
 
 <https://bio.tools/selox> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0622,
@@ -430275,7 +455833,7 @@ While high-resolution pathology images lend themselves well to 'data hungry' dee
     sc:url "http://selox.mpi-cbg.de/cgi-bin/selox/index" .
 
 <https://bio.tools/selphi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0128,
@@ -430295,7 +455853,7 @@ While high-resolution pathology images lend themselves well to 'data hungry' dee
     biotools:primaryContact "Support" .
 
 <https://bio.tools/selscan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3056 ;
     sc:citation <https://doi.org/10.1093/molbev/msu211> ;
@@ -430308,7 +455866,7 @@ While high-resolution pathology images lend themselves well to 'data hungry' dee
     sc:url "https://github.com/szpiech/selscan" .
 
 <https://bio.tools/selsim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3524 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/bth417> ;
@@ -430320,7 +455878,7 @@ While high-resolution pathology images lend themselves well to 'data hungry' dee
     sc:url "https://popmodels.cancercontrol.cancer.gov/gsr/packages/selsim" .
 
 <https://bio.tools/seltarbase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_2830,
@@ -430341,7 +455899,7 @@ While high-resolution pathology images lend themselves well to 'data hungry' dee
     biotools:primaryContact "Stefan M. Woerner" .
 
 <https://bio.tools/sem> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0082,
@@ -430363,7 +455921,7 @@ While high-resolution pathology images lend themselves well to 'data hungry' dee
     biotools:primaryContact "K. Sekar" .
 
 <https://bio.tools/sem1r> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0203,
         edam:topic_0637,
@@ -430381,8 +455939,30 @@ sem1R is a machine learning algorithm that finds interesting, hidden, and non-tr
     sc:name "sem1R" ;
     sc:url "http://github.com/fmalinka/sem1r" .
 
+<https://bio.tools/sema-trap> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0769,
+        edam:topic_3170,
+        edam:topic_3172,
+        edam:topic_3308 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAC371>,
+        "pmcid:PMC9252823",
+        "pubmed:35580059" ;
+    sc:description "Expression-based exploration tool for increased secondary metabolite production in bacteria." ;
+    sc:featureList edam:operation_0313,
+        edam:operation_3223,
+        edam:operation_3463 ;
+    sc:isAccessibleForFree true ;
+    sc:name "SeMa-Trap" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://sema-trap.ziemertlab.com" .
+
 <https://bio.tools/semantic-breast-tumor-segmentation-cnn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3304,
@@ -430399,7 +455979,7 @@ sem1R is a machine learning algorithm that finds interesting, hidden, and non-tr
     biotools:primaryContact "Majid Farzaneh" .
 
 <https://bio.tools/semantic_body_browser> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3067,
         edam:topic_3300,
@@ -430415,7 +455995,7 @@ sem1R is a machine learning algorithm that finds interesting, hidden, and non-tr
     sc:url "http://sbb.cellfinder.org/" .
 
 <https://bio.tools/semanticbi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0203,
@@ -430434,7 +456014,7 @@ SemanticBI: prediction of DNA-TF binding intensities (trained on DREAM5 PBM data
     sc:url "http://qianglab.scst.suda.edu.cn/semantic/" .
 
 <https://bio.tools/semanticcs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3169,
         edam:topic_3474 ;
@@ -430450,7 +456030,7 @@ SemanticCS: prediction of TF-DNA binding probability (trained on ChIP-seq datase
     sc:url "http://qianglab.scst.suda.edu.cn/semanticCS/" .
 
 <https://bio.tools/semanticgo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0780,
         edam:topic_3053 ;
@@ -430465,7 +456045,7 @@ Semantic analysis of Arabidopsis thaliana genes function.""" ;
     sc:url "http://bioinformatics.fafu.edu.cn/semanticGO/" .
 
 <https://bio.tools/semba> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_2533,
@@ -430481,7 +456061,7 @@ to determine the effect of a mutation on a protein’s stability.""" ;
     sc:url "http://amyloid.cs.mcgill.ca/semba.php" .
 
 <https://bio.tools/sembionlqa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0218,
         edam:topic_3063,
         edam:topic_3474 ;
@@ -430498,26 +456078,26 @@ SemBioNLQA - Semantic Biomedical Natural Language Question Answering - has the a
 
 <https://bio.tools/semdist> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ],
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0582" ;
-            sc:name "Ontology" ;
-            sc:sameAs "http://edamontology.org/data_0582" ] ;
+            sc:additionalType "http://edamontology.org/data_0582" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Ontology" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ],
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ],
+            sc:additionalType "http://edamontology.org/data_1772" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Score" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1772" ;
-            sc:name "Score" ;
-            sc:sameAs "http://edamontology.org/data_1772" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0089,
@@ -430537,7 +456117,7 @@ SemBioNLQA - Semantic Biomedical Natural Language Question Answering - has the a
     biotools:primaryContact "Ian Gonzalez" .
 
 <https://bio.tools/seme> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3474,
@@ -430553,7 +456133,7 @@ SemBioNLQA - Semantic Biomedical Natural Language Question Answering - has the a
     sc:url "http://biogpu.ddns.comp.nus.edu.sg/~chipseq/SEME/" .
 
 <https://bio.tools/semgen> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0157,
         edam:topic_2259,
@@ -430568,8 +456148,27 @@ SemBioNLQA - Semantic Biomedical Natural Language Question Answering - has the a
     sc:softwareHelp <http://sbp.bhi.washington.edu/projects/semgen/semgenhelp> ;
     sc:url "http://sbp.bhi.washington.edu/projects/semgen" .
 
+<https://bio.tools/semgraph> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0611,
+        edam:topic_3300,
+        edam:topic_3396 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC567>,
+        "pubmed:36040154" ;
+    sc:description "An R Package for Causal Network Inference of High-Throughput Data with Structural Equation Models." ;
+    sc:featureList edam:operation_3927 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "SEMgraph" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://cran.r-project.org/web/packages/SEMgraph/SEMgraph.pdf> ;
+    sc:url "https://cran.r-project.org/web/packages/SEMgraph" .
+
 <https://bio.tools/semi-automatic-medical-image3dsegmentation> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -430586,30 +456185,8 @@ SemBioNLQA - Semantic Biomedical Natural Language Question Answering - has the a
     sc:url "https://www.mathworks.com/matlabcentral/fileexchange/43010-semi-automatic-medical-image-3d-segmentation" ;
     biotools:primaryContact "Brad  Moffat" .
 
-<https://bio.tools/semi-supervised_miRNA> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0659,
-        edam:topic_3168,
-        edam:topic_3474,
-        edam:topic_3512,
-        edam:topic_3518 ;
-    sc:citation <https://doi.org/10.1186/S40246-019-0221-7>,
-        "pmcid:PMC6805288",
-        "pubmed:31639051" ;
-    sc:description """A semi-supervised machine learning framework for microRNA classification.
-
-Semi-supervised Machine Learning Framework for MicroRNA Prediction.
-
-Semi-supervised machine learning integrated pipeline for miRNA prediction.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'semi-supervised', 'miRNA', 'less-sequenced', 'multi-stage'""" ;
-    sc:featureList edam:operation_0463,
-        edam:operation_3359,
-        edam:operation_3792 ;
-    sc:name "semi-supervised miRNA" ;
-    sc:url "https://github.com/GreenCUBIC/SSmiRNA" .
-
 <https://bio.tools/semibin> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3174,
@@ -430630,7 +456207,7 @@ Semi-supervised machine learning integrated pipeline for miRNA prediction.
     sc:url "https://github.com/BigDataBiology/SemiBin/" .
 
 <https://bio.tools/semibiomarker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0140,
@@ -430644,7 +456221,7 @@ Semi-supervised machine learning integrated pipeline for miRNA prediction.
     sc:url "http://www.csbio.sjtu.edu.cn/bioinf/SemiBiomarker/" .
 
 <https://bio.tools/semicomprisks> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0749,
@@ -430660,8 +456237,28 @@ Semi-supervised machine learning integrated pipeline for miRNA prediction.
     sc:name "SemiCompRisks" ;
     sc:url "https://cran.r-project.org/package=SemiCompRisks" .
 
+<https://bio.tools/semiquantification> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0769,
+        edam:topic_3172,
+        edam:topic_3520 ;
+    sc:citation <https://doi.org/10.1021/ACS.ANALCHEM.2C01432>,
+        "pmcid:PMC9280717",
+        "pubmed:35760399" ;
+    sc:description "Novel Workflow for Semiquantification of Emerging Contaminants in Environmental Samples Analyzed by Gas Chromatography-Atmospheric Pressure Chemical Ionization-Quadrupole Time of Flight-Mass Spectrometry." ;
+    sc:featureList edam:operation_3659,
+        edam:operation_3799 ;
+    sc:isAccessibleForFree true ;
+    sc:name "semiquantification" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://trams.chem.uoa.gr/semiquantification/" .
+
 <https://bio.tools/semisup> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_2885,
@@ -430685,7 +456282,7 @@ Semi-supervised machine learning integrated pipeline for miRNA prediction.
     biotools:primaryContact "Armin Rauschenberger" .
 
 <https://bio.tools/semphy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_3293,
@@ -430701,7 +456298,7 @@ Semi-supervised machine learning integrated pipeline for miRNA prediction.
     sc:url "http://www.cs.huji.ac.il/labs/compbio/semphy/" .
 
 <https://bio.tools/sempi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2275,
@@ -430723,7 +456320,7 @@ Upload a genome in FASTA or GenBank format and predict metabolites. For detailed
     sc:url "http://sempi.pharmazie.uni-freiburg.de" .
 
 <https://bio.tools/semplme> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0611,
         edam:topic_0749,
         edam:topic_3169,
@@ -430742,7 +456339,7 @@ Implementation of the SEMplMe algorithm to integrate SEMpl with methylation data
     sc:url "https://github.com/Boyle-Lab/SEMplMe" .
 
 <https://bio.tools/senies> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3169,
@@ -430759,7 +456356,7 @@ Implementation of the SEMplMe algorithm to integrate SEMpl with methylation data
     sc:url "https://github.com/hlju-liye/SENIES" .
 
 <https://bio.tools/sensa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2259,
@@ -430775,7 +456372,7 @@ Implementation of the SEMplMe algorithm to integrate SEMpl with methylation data
     sc:url "http://gofid.biologie.hu-berlin.de/" .
 
 <https://bio.tools/sensaas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0202,
         edam:topic_0209,
@@ -430797,7 +456394,7 @@ Cheminformatic Tools and Databases for Pharmacology.""" ;
     sc:url "https://chemoinfo.ipmc.cnrs.fr/SENSAAS" .
 
 <https://bio.tools/sensei> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_2640,
         edam:topic_3299,
@@ -430821,7 +456418,7 @@ False negative rates. Lower is better. Each row correponds to a fixed number of
     sc:url "https://kchen-lab.github.io/sensei/table_beta.html" .
 
 <https://bio.tools/sensipath> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0621,
@@ -430838,7 +456435,7 @@ False negative rates. Lower is better. Each row correponds to a fixed number of
     sc:url "http://sensipath.micalis.fr/" .
 
 <https://bio.tools/sensitivity-t-statistic> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344 ;
@@ -430853,7 +456450,7 @@ False negative rates. Lower is better. Each row correponds to a fixed number of
     biotools:primaryContact "Anurag Banerjee" .
 
 <https://bio.tools/sepa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -430872,7 +456469,7 @@ False negative rates. Lower is better. Each row correponds to a fixed number of
     biotools:primaryContact "Zhicheng Ji" .
 
 <https://bio.tools/sepacs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0623 ;
@@ -430886,7 +456483,7 @@ False negative rates. Lower is better. Each row correponds to a fixed number of
     sc:url "http://fred.bioinf.uni-sb.de/sepacs.html" .
 
 <https://bio.tools/sepal> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3170,
@@ -430903,7 +456500,7 @@ False negative rates. Lower is better. Each row correponds to a fixed number of
     biotools:primaryContact "Alma Andersson" .
 
 <https://bio.tools/sepca> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3047,
         edam:topic_3382 ;
     sc:citation <https://doi.org/10.1109/TIP.2020.2988139>,
@@ -430918,7 +456515,7 @@ In photon-limited imaging, the pixel intensities are affected by photon count no
     sc:url "http://github.com/zhizhenz/sepca/" .
 
 <https://bio.tools/sephiroth> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -430932,7 +456529,7 @@ In photon-limited imaging, the pixel intensities are affected by photon count no
     sc:url "http://ibsquare.be/sephiroth" .
 
 <https://bio.tools/sepia> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0099,
@@ -430946,7 +456543,7 @@ In photon-limited imaging, the pixel intensities are affected by photon count no
     sc:url "http://anduril.org/sepia/" .
 
 <https://bio.tools/sepia-phase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3168,
         edam:topic_3384,
@@ -430964,7 +456561,7 @@ SEPIA is designed to provide a platform for easy access to different QSM process
     sc:url "https://github.com/kschan0214/sepia" .
 
 <https://bio.tools/sepia-sim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Workbench" ;
     sc:applicationSubCategory edam:topic_3293,
@@ -430991,7 +456588,7 @@ Note that SEPIA can use any dataset produced by FAVITES: we just happened to reu
     biotools:primaryContact <https://orcid.org/0000-0003-2209-8128> .
 
 <https://bio.tools/sepira> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0204 ;
@@ -431010,8 +456607,28 @@ Note that SEPIA can use any dataset produced by FAVITES: we just happened to reu
     sc:url "http://bioconductor.org/packages/release/bioc/html/SEPIRA.html" ;
     biotools:primaryContact "Yuting Chen" .
 
+<https://bio.tools/sepp> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_0872" ;
+            sc:name "Phylogenetic tree" ] ;
+    bsc:output [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2523" ;
+            sc:name "Phylogenetic data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_3293 ;
+    sc:citation <https://doi.org/10.1142/9789814366496_0024>,
+        "pubmed:22174280" ;
+    sc:description "SEPP stands for SATé-Enabled Phylogenetic Placement and addresses the problem of phylogenetic placement for meta-genomic short reads" ;
+    sc:featureList edam:operation_0324 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "sepp" ;
+    sc:softwareHelp <https://github.com/smirarab/sepp/blob/master/tutorial/sepp-tutorial.md> ;
+    sc:url "https://github.com/smirarab/sepp" .
+
 <https://bio.tools/seppa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0130,
@@ -431028,7 +456645,7 @@ Note that SEPIA can use any dataset produced by FAVITES: we just happened to reu
     sc:url "http://lifecenter.sgst.cn/seppa/index.php" .
 
 <https://bio.tools/sepresa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0199,
@@ -431045,7 +456662,7 @@ Note that SEPIA can use any dataset produced by FAVITES: we just happened to reu
     biotools:primaryContact "SePreSA Support" .
 
 <https://bio.tools/seprom> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0128,
         edam:topic_0621,
@@ -431066,22 +456683,22 @@ We are the Providers of Genome Analysis Software , Protein structure prediction
 
 <https://bio.tools/seq-annot> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1276" ;
-            sc:name "Nucleic acid features" ;
-            sc:sameAs "http://edamontology.org/data_1276" ],
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "DNA sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3494" ;
-            sc:name "DNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3494" ],
+            sc:additionalType "http://edamontology.org/data_1276" ;
+            sc:encodingFormat "http://edamontology.org/format_2305" ;
+            sc:name "Nucleic acid features" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1383" ;
-            sc:name "Nucleic acid sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_1383" ] ;
+            sc:additionalType "http://edamontology.org/data_1383" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Nucleic acid sequence alignment" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1276" ;
-            sc:name "Nucleic acid features" ;
-            sc:sameAs "http://edamontology.org/data_1276" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1276" ;
+            sc:encodingFormat "http://edamontology.org/format_3784" ;
+            sc:name "Nucleic acid features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3174 ;
     sc:description "Tools to facilitate annotation and comparison of genomes and metagenomes" ;
@@ -431097,7 +456714,7 @@ We are the Providers of Genome Analysis Software , Protein structure prediction
     sc:url "https://github.com/Brazelton-Lab/seq-annot" .
 
 <https://bio.tools/seq-em> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3053,
@@ -431110,8 +456727,32 @@ We are the Providers of Genome Analysis Software , Protein structure prediction
     sc:softwareHelp <http://www.cs.tau.ac.il/~heran/cozygene/software/seqem.html> ;
     sc:url "http://www.cs.tau.ac.il/~heran/cozygene/software/seqem.html" .
 
+<https://bio.tools/seq-setnet> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0082,
+        edam:topic_0166,
+        edam:topic_0199,
+        edam:topic_0593,
+        edam:topic_3542 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAB777>,
+        "pubmed:34849579" ;
+    sc:description "Directly exploiting multiple sequence alignment for protein secondary structure prediction." ;
+    sc:featureList edam:operation_0267,
+        edam:operation_0474,
+        edam:operation_0504,
+        edam:operation_2488,
+        edam:operation_3436 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "Seq-SetNet" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/fusong-ju/Seq-SetNet" .
+
 <https://bio.tools/seq-symrf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_0637,
         edam:topic_0659,
@@ -431135,8 +456776,30 @@ MDA.mat-- a binary matrix that represents the known miRNA-disease association fr
     sc:name "Seq-SymRF" ;
     sc:url "https://github.com/LeeKamlong/Seq-SymRF" .
 
+<https://bio.tools/seq2enz> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0209,
+        edam:topic_0821,
+        edam:topic_2814,
+        edam:topic_3500 ;
+    sc:citation <https://doi.org/10.1016/J.BBAPAP.2021.140721>,
+        "pubmed:34624539" ;
+    sc:description "An application of mask BLAST methodology with a new chemical logic of amino acids for improved enzyme function prediction." ;
+    sc:featureList edam:operation_0267,
+        edam:operation_0476,
+        edam:operation_3431,
+        edam:operation_4009 ;
+    sc:isAccessibleForFree true ;
+    sc:name "Seq2Enz" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://www.scfbio-iitd.res.in" .
+
 <https://bio.tools/seq2fun> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
@@ -431157,7 +456820,7 @@ MDA.mat-- a binary matrix that represents the known miRNA-disease association fr
     biotools:primaryContact "Jianguo Xia" .
 
 <https://bio.tools/seq2hla> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3308 ;
@@ -431174,7 +456837,7 @@ It takes standard RNA-Seq sequence reads in fastq format as input, uses a bowtie
     biotools:primaryContact "Sebastian Boegel" .
 
 <https://bio.tools/seq2hosts> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_0781,
@@ -431190,7 +456853,7 @@ It takes standard RNA-Seq sequence reads in fastq format as input, uses a bowtie
     sc:url "http://bioinfo.ihb.ac.cn/seq2hosts/" .
 
 <https://bio.tools/seq2logo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0154,
@@ -431211,18 +456874,18 @@ It takes standard RNA-Seq sequence reads in fastq format as input, uses a bowtie
 
 <https://bio.tools/seq2pathway> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2012" ;
-            sc:name "Sequence coordinates" ;
-            sc:sameAs "http://edamontology.org/data_2012" ] ;
+            sc:additionalType "http://edamontology.org/data_2012" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "Sequence coordinates" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1772" ;
-            sc:name "Score" ;
-            sc:sameAs "http://edamontology.org/data_1772" ],
+            sc:additionalType "http://edamontology.org/data_1772" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "Score" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2725" ;
-            sc:name "Ensembl transcript ID" ;
-            sc:sameAs "http://edamontology.org/data_2725" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2725" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "Ensembl transcript ID" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3169,
@@ -431246,7 +456909,7 @@ It takes standard RNA-Seq sequence reads in fastq format as input, uses a bowtie
         "Xinan Yang" .
 
 <https://bio.tools/seq2ref> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0108,
@@ -431262,7 +456925,7 @@ It takes standard RNA-Seq sequence reads in fastq format as input, uses a bowtie
     sc:url "http://prodata.swmed.edu/seq2ref/" .
 
 <https://bio.tools/seqQscorer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3168,
         edam:topic_3473,
         edam:topic_3474 ;
@@ -431275,7 +456938,7 @@ It takes standard RNA-Seq sequence reads in fastq format as input, uses a bowtie
     sc:url "https://github.com/salbrec/seqQscorer" .
 
 <https://bio.tools/seqacademy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -431299,14 +456962,14 @@ It takes standard RNA-Seq sequence reads in fastq format as input, uses a bowtie
 
 <https://bio.tools/seqan> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
+            sc:name "Sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_2205" ;
+            sc:name "Sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0797,
@@ -431339,7 +457002,7 @@ It takes standard RNA-Seq sequence reads in fastq format as input, uses a bowtie
     biotools:primaryContact "Mailing list answered by the developers" .
 
 <https://bio.tools/seqarray> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0199,
@@ -431360,7 +457023,7 @@ It takes standard RNA-Seq sequence reads in fastq format as input, uses a bowtie
     biotools:primaryContact <http://orcid.org/0000-0002-1390-0708> .
 
 <https://bio.tools/seqassem> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0196,
@@ -431372,7 +457035,7 @@ It takes standard RNA-Seq sequence reads in fastq format as input, uses a bowtie
     sc:url "http://www.sequentix.de/software_seqassem.php" .
 
 <https://bio.tools/seqassist> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3572 ;
     sc:citation <https://doi.org/10.1186/1471-2105-15-S11-S10>,
@@ -431388,7 +457051,7 @@ It takes standard RNA-Seq sequence reads in fastq format as input, uses a bowtie
     sc:url "http://orca.st.usm.edu/cbbl/seqassist/" .
 
 <https://bio.tools/seqatoms> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_2814,
@@ -431406,7 +457069,7 @@ It takes standard RNA-Seq sequence reads in fastq format as input, uses a bowtie
     biotools:primaryContact "SEQATOMs Support" .
 
 <https://bio.tools/seqbench> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0769,
@@ -431426,7 +457089,7 @@ It takes standard RNA-Seq sequence reads in fastq format as input, uses a bowtie
     sc:url "http://www.icbi.at/software/seqbench/seqbench.shtml" .
 
 <https://bio.tools/seqbias> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3168 ;
@@ -431446,7 +457109,7 @@ It takes standard RNA-Seq sequence reads in fastq format as input, uses a bowtie
     biotools:primaryContact "Daniel Jones" .
 
 <https://bio.tools/seqbox> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_3169,
@@ -431462,7 +457125,7 @@ It takes standard RNA-Seq sequence reads in fastq format as input, uses a bowtie
     biotools:primaryContact "Marco Beccuti" .
 
 <https://bio.tools/seqbuster> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_3308 ;
@@ -431477,7 +457140,7 @@ It takes standard RNA-Seq sequence reads in fastq format as input, uses a bowtie
     biotools:primaryContact "Lorena Pantano" .
 
 <https://bio.tools/seqcalc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0080,
@@ -431491,7 +457154,7 @@ It takes standard RNA-Seq sequence reads in fastq format as input, uses a bowtie
     sc:url "https://code.google.com/p/seqcalc/" .
 
 <https://bio.tools/seqcat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_3168 ;
@@ -431511,22 +457174,21 @@ It takes standard RNA-Seq sequence reads in fastq format as input, uses a bowtie
 
 <https://bio.tools/seqcksum> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2190" ;
-            sc:name "Sequence checksum" ;
-            sc:sameAs "http://edamontology.org/data_2190" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2190" ;
+            sc:name "Sequence checksum" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3071 ;
-    sc:author "Web Production" ;
-    sc:citation <https://doi.org/10.1093/nar/gkv1352> ;
+    sc:author "Job Dispatcher" ;
+    sc:citation <https://doi.org/10.1093/nar/gkac240>,
+        <https://doi.org/10.1093/nar/gkv1352> ;
     sc:description "Generation of checksums for protein and nucleotide sequences." ;
     sc:featureList edam:operation_3348 ;
-    sc:name "SeqCksum" ;
+    sc:name "SeqCksum (EBI)" ;
     sc:operatingSystem "Linux",
         "Mac",
         "Windows" ;
@@ -431535,22 +457197,22 @@ It takes standard RNA-Seq sequence reads in fastq format as input, uses a bowtie
         <http://www.ebi.ac.uk/about/terms-of-use> ;
     sc:softwareVersion "1" ;
     sc:url "http://www.ebi.ac.uk/Tools/so/seqcksum/" ;
-    biotools:primaryContact "Web Production" .
+    biotools:primaryContact "Job Dispatcher Team" .
 
 <https://bio.tools/seqcluster> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1381" ;
-            sc:name "Sequence alignment (pair)" ;
-            sc:sameAs "http://edamontology.org/data_1381" ],
+            sc:additionalType "http://edamontology.org/data_1381" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Sequence alignment (pair)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1383" ;
-            sc:name "Sequence alignment (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1383" ] ;
+            sc:additionalType "http://edamontology.org/data_1383" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Sequence alignment (nucleic acid)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3112" ;
-            sc:name "Gene expression matrix" ;
-            sc:sameAs "http://edamontology.org/data_3112" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3112" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Gene expression matrix" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3308 ;
     sc:author "Francisco Pantano Rubino",
@@ -431573,7 +457235,7 @@ It takes standard RNA-Seq sequence reads in fastq format as input, uses a bowtie
     sc:url "http://seqcluster.readthedocs.org" .
 
 <https://bio.tools/seqcna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2640,
@@ -431593,8 +457255,32 @@ It takes standard RNA-Seq sequence reads in fastq format as input, uses a bowtie
     sc:url "http://bioconductor.org/packages/release/bioc/html/seqCNA.html" ;
     biotools:primaryContact "David Mosen-Ansorena" .
 
+<https://bio.tools/seqcode> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0749,
+        edam:topic_3169,
+        edam:topic_3170,
+        edam:topic_3295,
+        edam:topic_3674 ;
+    sc:citation <https://doi.org/10.1038/S41598-021-98889-7>,
+        "pmcid:PMC8486768",
+        "pubmed:34599234" ;
+    sc:description "Productive visualization of high-throughput sequencing data using the SeqCode open portable platform." ;
+    sc:featureList edam:operation_0327,
+        edam:operation_0337,
+        edam:operation_3222,
+        edam:operation_3891 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "SeqCode" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/eblancoga/seqcode" .
+
 <https://bio.tools/seqcombo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:description "Provides useful functions for visualizing sequence recombination and virus reassortment events." ;
@@ -431612,7 +457298,7 @@ It takes standard RNA-Seq sequence reads in fastq format as input, uses a bowtie
     biotools:primaryContact "Guangchuang Yu" .
 
 <https://bio.tools/seqcons> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0196,
@@ -431627,7 +457313,7 @@ It takes standard RNA-Seq sequence reads in fastq format as input, uses a bowtie
     biotools:primaryContact "T. Rausch" .
 
 <https://bio.tools/seqcontrol> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3168,
@@ -431641,7 +457327,7 @@ It takes standard RNA-Seq sequence reads in fastq format as input, uses a bowtie
     sc:url "http://labs.oicr.on.ca/Boutros-lab/software/SeqControl" .
 
 <https://bio.tools/seqcor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0099,
@@ -431656,14 +457342,12 @@ It takes standard RNA-Seq sequence reads in fastq format as input, uses a bowtie
 
 <https://bio.tools/seqcount> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -431694,7 +457378,7 @@ It takes standard RNA-Seq sequence reads in fastq format as input, uses a bowtie
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/seqcount.html" .
 
 <https://bio.tools/seqdepot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btt658> ;
@@ -431710,7 +457394,7 @@ It takes standard RNA-Seq sequence reads in fastq format as input, uses a bowtie
     sc:url "http://seqdepot.net/" .
 
 <https://bio.tools/seqdistk> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0637,
         edam:topic_0659,
@@ -431728,7 +457412,7 @@ It takes standard RNA-Seq sequence reads in fastq format as input, uses a bowtie
     sc:url "https://github.com/htczero/SeqDistK" .
 
 <https://bio.tools/seqeditor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0632,
         edam:topic_0654,
@@ -431746,7 +457430,7 @@ SeqEditor is a Sequence Browser for the management and analysis of nucleotide an
     sc:url "https://gpro.biotechvana.com/tool/seqeditor/manual" .
 
 <https://bio.tools/seqem> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625 ;
     sc:citation "pubmed:20861027" ;
@@ -431757,7 +457441,7 @@ SeqEditor is a Sequence Browser for the management and analysis of nucleotide an
     biotools:primaryContact "M. Schmidt" .
 
 <https://bio.tools/seqenhdl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0196,
         edam:topic_2229,
@@ -431784,7 +457468,7 @@ Testing data can be download from http://www.bdxconsult.com/SeqEnhDL.""" ;
     sc:url "https://github.com/wyp1125/SeqEnhDL" .
 
 <https://bio.tools/seqentropy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0157,
         edam:topic_0622,
@@ -431801,7 +457485,7 @@ Testing data can be download from http://www.bdxconsult.com/SeqEnhDL.""" ;
     sc:url "http://sourceforge.net/projects/seqentropy/?source=navbar" .
 
 <https://bio.tools/seqexpress> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0203 ;
@@ -431815,7 +457499,7 @@ Testing data can be download from http://www.bdxconsult.com/SeqEnhDL.""" ;
     sc:url "http://www.seqexpress.com/" .
 
 <https://bio.tools/seqfam> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0654 ;
     sc:citation <https://doi.org/10.12688/f1000research.13930.1> ;
@@ -431834,7 +457518,7 @@ Testing data can be download from http://www.bdxconsult.com/SeqEnhDL.""" ;
     sc:url "https://github.com/mframpton/seqfam" .
 
 <https://bio.tools/seqfeatr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -431856,7 +457540,7 @@ Testing data can be download from http://www.bdxconsult.com/SeqEnhDL.""" ;
     biotools:primaryContact <http://orcid.org/0000-0002-9313-8636> .
 
 <https://bio.tools/seqfire> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0194,
@@ -431877,7 +457561,7 @@ Testing data can be download from http://www.bdxconsult.com/SeqEnhDL.""" ;
     biotools:primaryContact "Pravech AJAWATANAWONG" .
 
 <https://bio.tools/seqfold> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0099,
@@ -431895,23 +457579,36 @@ Testing data can be download from http://www.bdxconsult.com/SeqEnhDL.""" ;
 
 <https://bio.tools/seqfu> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3494" ;
-            sc:name "DNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3494" ] ;
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:encodingFormat "http://edamontology.org/format_2545" ;
+            sc:name "DNA sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3494" ;
-            sc:name "DNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3494" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:encodingFormat "http://edamontology.org/format_2545" ;
+            sc:name "DNA sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0077,
+        edam:topic_0080 ;
+    sc:citation <https://doi.org/10.3390/bioengineering8050059>,
+        "pmcid:PMC8148589",
+        "pubmed:34066939" ;
     sc:description "A collection of utilities to manipulate FASTA and FASTQ files, supporting Gzipped input." ;
     sc:featureList edam:operation_3187,
         edam:operation_3695 ;
     sc:name "seqfu" ;
     sc:softwareHelp <https://telatin.github.io/seqfu2/> ;
+    sc:softwareVersion "1.10.0",
+        "1.11.0",
+        "1.12.0",
+        "1.13.0",
+        "1.14.0",
+        "1.15.0",
+        "1.16.0" ;
     sc:url "https://telatin.github.io/seqfu2/" .
 
 <https://bio.tools/seqgendiff> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0780,
         edam:topic_2269,
         edam:topic_3170 ;
@@ -431924,7 +457621,7 @@ Testing data can be download from http://www.bdxconsult.com/SeqEnhDL.""" ;
     sc:url "https://cran.r-project.org/package=seqgendiff" .
 
 <https://bio.tools/seqgsea> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -431944,7 +457641,7 @@ Testing data can be download from http://www.bdxconsult.com/SeqEnhDL.""" ;
     biotools:primaryContact <http://orcid.org/0000-0002-7572-6354> .
 
 <https://bio.tools/seqhound> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0089,
@@ -431963,14 +457660,16 @@ Testing data can be download from http://www.bdxconsult.com/SeqEnhDL.""" ;
 
 <https://bio.tools/seqkit> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3494" ;
-            sc:name "DNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3494" ] ;
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "DNA sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3494" ;
-            sc:name "DNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3494" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "DNA sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:applicationSubCategory edam:topic_0080,
+        edam:topic_3489 ;
     sc:citation <https://doi.org/10.1371/journal.pone.0163962> ;
     sc:description "FASTA and FASTQ are basic and ubiquitous formats for storing nucleotide and protein sequences. Common manipulations of FASTA/Q file include converting, searching, filtering, deduplication, splitting, shuffling, and sampling. Existing tools only implement some of these manipulations, and not particularly efficiently, and some are only available for certain operating systems. Furthermore, the complicated installation process of required packages and running environments can render these programs less user friendly. SeqKit demonstrates competitive performance in execution time and memory usage compared to similar tools. The efficiency and usability of SeqKit enable researchers to rapidly accomplish common FASTA/Q file manipulations." ;
     sc:featureList edam:operation_0233,
@@ -431981,7 +457680,7 @@ Testing data can be download from http://www.bdxconsult.com/SeqEnhDL.""" ;
     sc:url "https://bioinf.shenwei.me/seqkit/" .
 
 <https://bio.tools/seqknn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0203,
@@ -431999,7 +457698,7 @@ Testing data can be download from http://www.bdxconsult.com/SeqEnhDL.""" ;
     biotools:primaryContact "Shujaat Khan" .
 
 <https://bio.tools/seql> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3068 ;
@@ -432015,14 +457714,12 @@ Testing data can be download from http://www.bdxconsult.com/SeqEnhDL.""" ;
 
 <https://bio.tools/seql-nrps> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1233" ;
-            sc:name "Sequence set (protein)" ;
-            sc:sameAs "http://edamontology.org/data_1233" ] ;
+            sc:additionalType "http://edamontology.org/data_1233" ;
+            sc:name "Sequence set (protein)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:name "Sequence features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_3510,
@@ -432044,14 +457741,12 @@ Testing data can be download from http://www.bdxconsult.com/SeqEnhDL.""" ;
 
 <https://bio.tools/seqlm> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3108" ;
-            sc:name "Experimental measurement" ;
-            sc:sameAs "http://edamontology.org/data_3108" ] ;
+            sc:additionalType "http://edamontology.org/data_3108" ;
+            sc:name "Experimental measurement" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0160 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btw304> ;
@@ -432067,7 +457762,7 @@ Testing data can be download from http://www.bdxconsult.com/SeqEnhDL.""" ;
     sc:url "https://github.com/raivokolde/seqlm" .
 
 <https://bio.tools/seqlogo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0102 ;
@@ -432085,7 +457780,7 @@ Testing data can be download from http://www.bdxconsult.com/SeqEnhDL.""" ;
     biotools:primaryContact "Oliver Bembom" .
 
 <https://bio.tools/seqlogo-generator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0654,
@@ -432102,7 +457797,7 @@ Testing data can be download from http://www.bdxconsult.com/SeqEnhDL.""" ;
     biotools:primaryContact "Malcolm McLean" .
 
 <https://bio.tools/seqlogofig> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_3070,
@@ -432119,7 +457814,7 @@ Testing data can be download from http://www.bdxconsult.com/SeqEnhDL.""" ;
     biotools:primaryContact "Will Dampier" .
 
 <https://bio.tools/seqman_ngen> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0622,
@@ -432139,7 +457834,7 @@ Testing data can be download from http://www.bdxconsult.com/SeqEnhDL.""" ;
     biotools:primaryContact "DNASTAR Support" .
 
 <https://bio.tools/seqmap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102 ;
     sc:citation "pubmed:18697769" ;
@@ -432156,14 +457851,12 @@ Testing data can be download from http://www.bdxconsult.com/SeqEnhDL.""" ;
 
 <https://bio.tools/seqmatchall> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1381" ;
-            sc:name "Sequence alignment (pair)" ;
-            sc:sameAs "http://edamontology.org/data_1381" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1381" ;
+            sc:name "Sequence alignment (pair)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0097 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -432193,7 +457886,7 @@ Testing data can be download from http://www.bdxconsult.com/SeqEnhDL.""" ;
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/seqmatchall.html" .
 
 <https://bio.tools/seqmatchall_ws_husar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2> ;
@@ -432205,7 +457898,7 @@ Testing data can be download from http://www.bdxconsult.com/SeqEnhDL.""" ;
     sc:url "http://genius.embnet.dkfz-heidelberg.de/menu/hobit/embdoc/seqmatchall.html" .
 
 <https://bio.tools/seqminer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0102,
@@ -432225,7 +457918,7 @@ Testing data can be download from http://www.bdxconsult.com/SeqEnhDL.""" ;
     sc:url "http://bips.u-strasbg.fr/seqminer/tiki-index.php" .
 
 <https://bio.tools/seqminer-variant> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3053 ;
@@ -432242,7 +457935,7 @@ Testing data can be download from http://www.bdxconsult.com/SeqEnhDL.""" ;
     sc:url "http://seqminer.genomic.codes/" .
 
 <https://bio.tools/seqminer2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0625,
         edam:topic_3337 ;
@@ -432264,7 +457957,7 @@ vcf.idx.file <- "input.vcf.scIdx".""" ;
     sc:url "https://github.com/zhanxw/seqminer" .
 
 <https://bio.tools/seqmonk> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3173 ;
@@ -432284,7 +457977,7 @@ vcf.idx.file <- "input.vcf.scIdx".""" ;
     biotools:primaryContact "Simon Andrews" .
 
 <https://bio.tools/seqms> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121 ;
     sc:citation <https://doi.org/10.1002/(SICI)1522-2683> ;
@@ -432295,7 +457988,7 @@ vcf.idx.file <- "input.vcf.scIdx".""" ;
     biotools:primaryContact "Jorge Fernandez-de-Coss" .
 
 <https://bio.tools/seqmule> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654 ;
@@ -432311,7 +458004,7 @@ vcf.idx.file <- "input.vcf.scIdx".""" ;
     sc:url "http://seqmule.openbioinformatics.org/en/latest/" .
 
 <https://bio.tools/seqnet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -432332,7 +458025,7 @@ vcf.idx.file <- "input.vcf.scIdx".""" ;
     sc:url "https://github.com/tgrimes/SeqNet" .
 
 <https://bio.tools/seqpac> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Workbench" ;
     sc:applicationSubCategory edam:topic_0625,
@@ -432351,7 +458044,7 @@ vcf.idx.file <- "input.vcf.scIdx".""" ;
     biotools:primaryContact <https://orcid.org/0000-0001-9182-9401> .
 
 <https://bio.tools/seqpare> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102 ;
     sc:citation <https://doi.org/10.1101/2020.04.05.026732> ;
     sc:description """a self-consistent metric of similarity between genomic interval sets.
@@ -432364,7 +458057,7 @@ Seqpare is a self-consistent metric and tool for comparing sequences based on th
     sc:url "https://github.com/deepstanding/seqpare" .
 
 <https://bio.tools/seqpattern> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0160 ;
@@ -432383,22 +458076,22 @@ Seqpare is a self-consistent metric and tool for comparing sequences based on th
 
 <https://bio.tools/seqplots> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1270" ;
-            sc:name "Feature table" ;
-            sc:sameAs "http://edamontology.org/data_1270" ],
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_3005" ;
+            sc:name "Annotation track" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ] ;
+            sc:additionalType "http://edamontology.org/data_1270" ;
+            sc:encodingFormat "http://edamontology.org/format_3005" ;
+            sc:name "Feature table" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ],
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3508" ;
+            sc:name "Plot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1636" ;
-            sc:name "Heat map" ;
-            sc:sameAs "http://edamontology.org/data_1636" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1636" ;
+            sc:encodingFormat "http://edamontology.org/format_3508" ;
+            sc:name "Heat map" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -432417,7 +458110,7 @@ Seqpare is a self-consistent metric and tool for comparing sequences based on th
     biotools:primaryContact "Przemyslaw Stempor" .
 
 <https://bio.tools/seqpower> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3053,
         edam:topic_3168,
@@ -432432,7 +458125,7 @@ Seqpare is a self-consistent metric and tool for comparing sequences based on th
     sc:url "http://bioinformatics.org/spower/" .
 
 <https://bio.tools/seqprep> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0622,
@@ -432447,8 +458140,32 @@ Seqpare is a self-consistent metric and tool for comparing sequences based on th
     sc:url "https://github.com/jstjohn/SeqPrep" ;
     biotools:primaryContact "S. C. Zhang" .
 
+<https://bio.tools/seqprop> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0099,
+        edam:topic_0634,
+        edam:topic_0654,
+        edam:topic_3169,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1186/S12859-021-04437-5>,
+        "pmcid:PMC8527647",
+        "pubmed:34670493" ;
+    sc:description "Fast activation maximization for molecular sequence design." ;
+    sc:featureList edam:operation_0479,
+        edam:operation_0480,
+        edam:operation_4008,
+        edam:operation_4009 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "SeqProp" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://www.github.com/johli/seqprop" .
+
 <https://bio.tools/seqr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0625,
@@ -432470,7 +458187,7 @@ Seqpare is a self-consistent metric and tool for comparing sequences based on th
     biotools:primaryContact "GitHub Issues" .
 
 <https://bio.tools/seqrepo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0203,
         edam:topic_3168 ;
@@ -432489,14 +458206,12 @@ A "fully-qualified" identifier includes a namespace to disambiguate accessions (
 
 <https://bio.tools/seqret> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -432528,22 +458243,18 @@ A "fully-qualified" identifier includes a namespace to disambiguate accessions (
 
 <https://bio.tools/seqret-ebi> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:name "Sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:name "Sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:name "Sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:author "EMBOSS",
@@ -432565,14 +458276,12 @@ A "fully-qualified" identifier includes a namespace to disambiguate accessions (
 
 <https://bio.tools/seqretsetall> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -432604,14 +458313,12 @@ A "fully-qualified" identifier includes a namespace to disambiguate accessions (
 
 <https://bio.tools/seqretsplit> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -432642,7 +458349,7 @@ A "fully-qualified" identifier includes a namespace to disambiguate accessions (
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/seqretsplit.html" .
 
 <https://bio.tools/seqsaw> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3320 ;
@@ -432660,7 +458367,7 @@ A "fully-qualified" identifier includes a namespace to disambiguate accessions (
     biotools:primaryContact "seqsaw team" .
 
 <https://bio.tools/seqscreen> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0637,
@@ -432680,14 +458387,14 @@ A "fully-qualified" identifier includes a namespace to disambiguate accessions (
 
 <https://bio.tools/seqseg> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ] ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:encodingFormat "http://edamontology.org/format_2571" ;
+            sc:name "Nucleic acid sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2032" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_2640,
@@ -432708,7 +458415,7 @@ A "fully-qualified" identifier includes a namespace to disambiguate accessions (
     sc:url "http://www.broadinstitute.org/cgi-bin/cancer/publications/pub_paper.cgi?mode=view&paper_id=182" .
 
 <https://bio.tools/seqsetvis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3168,
         edam:topic_3169 ;
@@ -432727,7 +458434,7 @@ A "fully-qualified" identifier includes a namespace to disambiguate accessions (
     biotools:primaryContact "Joseph R Boyd" .
 
 <https://bio.tools/seqsimla> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
@@ -432745,7 +458452,7 @@ A "fully-qualified" identifier includes a namespace to disambiguate accessions (
     sc:url "http://seqsimla.sourceforge.net/" .
 
 <https://bio.tools/seqsite> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3169 ;
     sc:citation "pubmed:22784574" ;
@@ -432761,7 +458468,7 @@ A "fully-qualified" identifier includes a namespace to disambiguate accessions (
         "Xuegong Zhang (Corresponding)" .
 
 <https://bio.tools/seqsolve> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_3169,
         edam:topic_3170,
@@ -432778,7 +458485,7 @@ A "fully-qualified" identifier includes a namespace to disambiguate accessions (
     biotools:primaryContact "ASEBIO Support" .
 
 <https://bio.tools/seqspark> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_3673,
@@ -432797,7 +458504,7 @@ A "fully-qualified" identifier includes a namespace to disambiguate accessions (
     biotools:primaryContact "Suzanne M. Leal" .
 
 <https://bio.tools/seqsphere> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0797,
         edam:topic_3301 ;
@@ -432814,7 +458521,7 @@ A "fully-qualified" identifier includes a namespace to disambiguate accessions (
     biotools:primaryContact "Contact Form" .
 
 <https://bio.tools/seqsqc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3168 ;
@@ -432831,7 +458538,7 @@ A "fully-qualified" identifier includes a namespace to disambiguate accessions (
     biotools:primaryContact "Qian Liu" .
 
 <https://bio.tools/seqstats> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_2269,
@@ -432849,7 +458556,7 @@ A "fully-qualified" identifier includes a namespace to disambiguate accessions (
     biotools:primaryContact <https://orcid.org/0000-0002-1567-306X> .
 
 <https://bio.tools/seqstrap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654 ;
@@ -432863,7 +458570,7 @@ A "fully-qualified" identifier includes a namespace to disambiguate accessions (
     sc:url "http://public.lanl.gov/jgans/" .
 
 <https://bio.tools/seqtk> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1186/s13104-017-2616-7>,
@@ -432879,7 +458586,7 @@ A "fully-qualified" identifier includes a namespace to disambiguate accessions (
     sc:url "https://github.com/lh3/seqtk" .
 
 <https://bio.tools/seqtk-trinity> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:description "seqtk-trinity is a toolkit for processing sequences in FASTA/Q formats." ;
@@ -432889,7 +458596,7 @@ A "fully-qualified" identifier includes a namespace to disambiguate accessions (
     sc:url "https://github.com/trinityrnaseq/seqtk-trinity" .
 
 <https://bio.tools/seqtools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0080 ;
@@ -432907,7 +458614,7 @@ A "fully-qualified" identifier includes a namespace to disambiguate accessions (
     biotools:primaryContact "Wolfgang Kaisers" .
 
 <https://bio.tools/seqtrace> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0654,
@@ -432924,7 +458631,7 @@ A "fully-qualified" identifier includes a namespace to disambiguate accessions (
     sc:url "https://code.google.com/p/seqtrace/" .
 
 <https://bio.tools/seqtrim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3071,
         edam:topic_3168 ;
@@ -432940,7 +458647,7 @@ A "fully-qualified" identifier includes a namespace to disambiguate accessions (
     biotools:primaryContact "Contact Form" .
 
 <https://bio.tools/seqtrimmap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0654,
@@ -432955,7 +458662,7 @@ A "fully-qualified" identifier includes a namespace to disambiguate accessions (
     sc:url "http://sgjlab.org/seqtrimmap/" .
 
 <https://bio.tools/seqtu> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0203,
@@ -432972,14 +458679,14 @@ A "fully-qualified" identifier includes a namespace to disambiguate accessions (
 
 <https://bio.tools/seqtypedetect> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1093/nar/gkw343>,
@@ -432992,7 +458699,7 @@ A "fully-qualified" identifier includes a namespace to disambiguate accessions (
     biotools:primaryContact "Galaxy Support Team" .
 
 <https://bio.tools/sequ-into> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_3169,
         edam:topic_3170,
@@ -433020,14 +458727,14 @@ Free document hosting provided by Read the Docs.""" ;
 
 <https://bio.tools/sequana_coverage> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2854" ;
-            sc:name "Position-specific scoring matrix" ;
-            sc:sameAs "http://edamontology.org/data_2854" ] ;
+            sc:additionalType "http://edamontology.org/data_2854" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Position-specific scoring matrix" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3316 ;
@@ -433050,14 +458757,12 @@ Free document hosting provided by Read the Docs.""" ;
 
 <https://bio.tools/sequanix> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0080 ;
@@ -433075,7 +458780,7 @@ Free document hosting provided by Read the Docs.""" ;
     biotools:primaryContact "Cokelaer" .
 
 <https://bio.tools/sequedex> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3174,
@@ -433092,7 +458797,7 @@ Free document hosting provided by Read the Docs.""" ;
     biotools:primaryContact "Sequedex Support" .
 
 <https://bio.tools/sequeltools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_0780,
         edam:topic_3168 ;
@@ -433112,7 +458817,7 @@ SequelTools is a fast and easy to install command-line program that provides a c
     sc:url "https://github.com/ISUgenomics/SequelTools" .
 
 <https://bio.tools/sequence-assembly-app> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0196,
@@ -433132,7 +458837,7 @@ SequelTools is a fast and easy to install command-line program that provides a c
     biotools:primaryContact "Turner Conrad" .
 
 <https://bio.tools/sequence_harmony> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0157,
@@ -433155,14 +458860,14 @@ SequelTools is a fast and easy to install command-line program that provides a c
 
 <https://bio.tools/sequence_in_sequence_finder> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ] ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Nucleic acid sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0858" ;
-            sc:name "Sequence signature matches" ;
-            sc:sameAs "http://edamontology.org/data_0858" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0858" ;
+            sc:encodingFormat "http://edamontology.org/format_3003" ;
+            sc:name "Sequence signature matches" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622 ;
     sc:author "Thomas Haschka" ;
@@ -433179,7 +458884,7 @@ SequelTools is a fast and easy to install command-line program that provides a c
     biotools:primaryContact "Thomas Haschka" .
 
 <https://bio.tools/sequence_maneuverer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0654,
@@ -433196,7 +458901,7 @@ SequelTools is a fast and easy to install command-line program that provides a c
     sc:url "http://ww3.comsats.edu.pk/bio/SequenceManeuverer.aspx" .
 
 <https://bio.tools/sequence_searcher> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0160,
@@ -433209,8 +458914,26 @@ SequelTools is a fast and easy to install command-line program that provides a c
         "Windows" ;
     sc:url "http://athena.bioc.uvic.ca/virology-ca-tools/sequence-searcher/" .
 
+<https://bio.tools/sequencematrix> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0196,
+        edam:topic_2229,
+        edam:topic_3053 ;
+    sc:citation <https://doi.org/10.1111/J.1096-0031.2010.00329.X>,
+        "pubmed:34875773" ;
+    sc:description "Concatenation software for the fast assembly of multi-gene datasets with character set and codon information." ;
+    sc:featureList edam:operation_0310 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-2.0" ;
+    sc:name "SequenceMatrix" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://www.ggvaidya.com/taxondna/" .
+
 <https://bio.tools/sequencerr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_2229,
@@ -433227,18 +458950,17 @@ SequelTools is a fast and easy to install command-line program that provides a c
 
 <https://bio.tools/sequenceserver> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_2200" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0867" ;
-            sc:name "Sequence alignment report" ;
-            sc:sameAs "http://edamontology.org/data_0867" ],
+            sc:additionalType "http://edamontology.org/data_0867" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Sequence alignment report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0857" ;
-            sc:name "Sequence search results" ;
-            sc:sameAs "http://edamontology.org/data_0857" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0857" ;
+            sc:name "Sequence search results" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0091 ;
     sc:author "WurmLab" ;
@@ -433258,7 +458980,7 @@ SequelTools is a fast and easy to install command-line program that provides a c
         "Yannick Wurm" .
 
 <https://bio.tools/sequencevariantanalyzer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0199,
@@ -433273,7 +458995,7 @@ SequelTools is a fast and easy to install command-line program that provides a c
     sc:url "http://www.omicsexpress.com/sva.php" .
 
 <https://bio.tools/sequencher> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0196 ;
     sc:citation <https://doi.org/10.1089/152791600319231> ;
@@ -433288,7 +459010,7 @@ SequelTools is a fast and easy to install command-line program that provides a c
         "Technical support" .
 
 <https://bio.tools/sequenom2pedfile> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3053,
         edam:topic_3344,
@@ -433306,7 +459028,7 @@ SequelTools is a fast and easy to install command-line program that provides a c
     biotools:primaryContact "Ismael Huertas" .
 
 <https://bio.tools/sequgio> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_3170 ;
@@ -433322,7 +459044,7 @@ SequelTools is a fast and easy to install command-line program that provides a c
     sc:url "http://fafner.meb.ki.se/personal/yudpaw/?page_id=13" .
 
 <https://bio.tools/sequila> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3673,
         edam:topic_3676 ;
@@ -433338,7 +459060,7 @@ SequelTools is a fast and easy to install command-line program that provides a c
     sc:url "https://github.com/biodatageeks/sequila" .
 
 <https://bio.tools/sequins> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -433353,7 +459075,7 @@ SequelTools is a fast and easy to install command-line program that provides a c
     sc:url "http://www.ysbl.york.ac.uk/~cowtan/sequins/sequins.html" .
 
 <https://bio.tools/sequoia> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:citation <https://doi.org/10.1007/978-3-030-51054-1_32>,
         "pmcid:PMC7324041" ;
     sc:description """A Playground for Logicians.
@@ -433377,7 +459099,7 @@ Bower (note that Bower can be installed via npm once Node.js is installed).""" ;
     sc:url "https://github.com/meta-logic/sequoia" .
 
 <https://bio.tools/sequoia_visual> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0091,
@@ -433404,7 +459126,7 @@ Bower (note that Bower can be installed via npm once Node.js is installed).""" ;
     sc:url "https://github.com/dnonatar/Sequoia" .
 
 <https://bio.tools/sequoya> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0199,
         edam:topic_3372 ;
@@ -433420,7 +459142,7 @@ Sequoya is an open source software tool aimed at for solving Multiple Sequence A
     sc:url "https://github.com/benhid/Sequoya" .
 
 <https://bio.tools/seqvartools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0199 ;
@@ -433440,7 +459162,7 @@ Sequoya is an open source software tool aimed at for solving Multiple Sequence A
         "Xiuwen Zheng" .
 
 <https://bio.tools/seqvista> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0203,
@@ -433465,7 +459187,7 @@ Sequoya is an open source software tool aimed at for solving Multiple Sequence A
         "Zhiping Weng" .
 
 <https://bio.tools/seqware> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web API",
         "Workbench" ;
@@ -433492,7 +459214,7 @@ Sequoya is an open source software tool aimed at for solving Multiple Sequence A
         "Denis Yuen" .
 
 <https://bio.tools/seqwho> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0157,
         edam:topic_3168 ;
@@ -433510,7 +459232,7 @@ Sequoya is an open source software tool aimed at for solving Multiple Sequence A
     sc:url "https://github.com/DaehwanKimLab/seqwho" .
 
 <https://bio.tools/seqwords> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:description "Featherweight object for the calculation of n-mer word occurrences in a single sequence." ;
@@ -433524,14 +459246,12 @@ Sequoya is an open source software tool aimed at for solving Multiple Sequence A
 
 <https://bio.tools/seqxref> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2093" ;
-            sc:name "Data reference" ;
-            sc:sameAs "http://edamontology.org/data_2093" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2093" ;
+            sc:name "Data reference" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -433562,14 +459282,12 @@ Sequoya is an open source software tool aimed at for solving Multiple Sequence A
 
 <https://bio.tools/seqxrefget> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2093" ;
-            sc:name "Data reference" ;
-            sc:sameAs "http://edamontology.org/data_2093" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2093" ;
+            sc:name "Data reference" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3077 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -433599,7 +459317,7 @@ Sequoya is an open source software tool aimed at for solving Multiple Sequence A
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/seqxrefget.html" .
 
 <https://bio.tools/serac> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_2269,
         edam:topic_3299 ;
@@ -433613,7 +459331,7 @@ Sequoya is an open source software tool aimed at for solving Multiple Sequence A
     sc:url "https://github.com/rosalieb/serac" .
 
 <https://bio.tools/serbgo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -433627,7 +459345,7 @@ Sequoya is an open source software tool aimed at for solving Multiple Sequence A
     sc:url "http://www.geneontology.org/GO.tools.microarray.shtml" .
 
 <https://bio.tools/sergio> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0203,
         edam:topic_0602,
@@ -433648,7 +459366,7 @@ SERGIO is a simulator for single-cell expression data guided by gene regulatory
     sc:url "https://github.com/PayamDiba/SERGIO" .
 
 <https://bio.tools/seri-fourier-gui> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344 ;
@@ -433663,7 +459381,7 @@ SERGIO is a simulator for single-cell expression data guided by gene regulatory
     biotools:primaryContact "Sayed Meysam Hosseini" .
 
 <https://bio.tools/serialem> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3452 ;
     sc:citation <https://doi.org/10.1016/j.jsb.2005.07.007> ;
@@ -433677,8 +459395,35 @@ SERGIO is a simulator for single-cell expression data guided by gene regulatory
     sc:softwareVersion "3.4.8" ;
     sc:url "http://bio3d.colorado.edu/SerialEM/index.html" .
 
+<https://bio.tools/serotypefinder> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Sequence" ] ;
+    bsc:output [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1413" ;
+            sc:name "Sequence similarity" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2299" ;
+            sc:name "Gene name" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0102 ;
+    sc:citation <https://doi.org/10.1128/JCM.00008-15>,
+        "pmcid:PMC4508402",
+        "pubmed:25972421" ;
+    sc:description "SerotypeFinder identifies the serotype in total or partial sequenced isolates of E. coli." ;
+    sc:featureList edam:operation_3198 ;
+    sc:isAccessibleForFree true ;
+    sc:name "SerotypeFinder" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareVersion "2.0" ;
+    sc:url "https://cge.cbs.dtu.dk/services/SerotypeFinder/" .
+
 <https://bio.tools/serpentine> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0108,
         edam:topic_0157,
@@ -433702,8 +459447,30 @@ Executing the command serpentine --help will give you a brief help of the comman
     sc:softwareHelp <https://serpentine.readthedocs.io/en/latest/> ;
     sc:url "https://github.com/koszullab/serpentine" .
 
+<https://bio.tools/serping1> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0199,
+        edam:topic_0625,
+        edam:topic_0634,
+        edam:topic_3320,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.1186/S41065-022-00242-Z>,
+        "pmcid:PMC9277798",
+        "pubmed:35821062" ;
+    sc:description "Mutation update of SERPING1 related to hereditary angioedema in the Chinese population" ;
+    sc:featureList edam:operation_3196,
+        edam:operation_3225,
+        edam:operation_3227 ;
+    sc:isAccessibleForFree true ;
+    sc:name "SERPING1" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://databases.lovd.nl/shared/variants/SERPING1" .
+
 <https://bio.tools/serrana> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0654,
         edam:topic_0736,
@@ -433720,7 +459487,7 @@ SerraNA is composed by three executables: SerraNA, Analysis and Extract.""" ;
     sc:url "https://github.com/agnesnoy/SerraNA" .
 
 <https://bio.tools/servalcat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0611,
@@ -433738,10 +459505,9 @@ SerraNA is composed by three executables: SerraNA, Analysis and Extract.""" ;
 
 <https://bio.tools/servertell> a sc:SoftwareApplication ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0957" ;
-            sc:name "Database metadata" ;
-            sc:sameAs "http://edamontology.org/data_0957" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0957" ;
+            sc:name "Database metadata" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -433771,7 +459537,7 @@ SerraNA is composed by three executables: SerraNA, Analysis and Extract.""" ;
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/servertell.html" .
 
 <https://bio.tools/services_from_zhou_laboratory> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0130,
@@ -433797,7 +459563,7 @@ SerraNA is composed by three executables: SerraNA, Analysis and Extract.""" ;
     biotools:primaryContact "Hongyi Zhou" .
 
 <https://bio.tools/sesame> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3314,
         edam:topic_3315 ;
@@ -433814,7 +459580,7 @@ Sesame is an open source drift-diffusion-Poisson solver in one and two dimension
     sc:url "https://pages.nist.gov/sesame/" .
 
 <https://bio.tools/sesaw> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btq116> ;
@@ -433833,7 +459599,7 @@ Sesame is an open source drift-diffusion-Poisson solver in one and two dimension
     sc:url "http://sysimm.ifrec.osaka-u.ac.jp/sesaw.2.0/" .
 
 <https://bio.tools/sesca> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0593,
         edam:topic_2828,
         edam:topic_3306,
@@ -433857,8 +459623,27 @@ Electronic circular dichroism (CD) spectroscopy is highly sensitive to changes i
     sc:name "SESCA" ;
     sc:url "https://www.mpibpc.mpg.de/sesca" .
 
+<https://bio.tools/setapp> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Desktop application" ;
+    sc:applicationSubCategory edam:topic_3382,
+        edam:topic_3474,
+        edam:topic_3500,
+        edam:topic_3855 ;
+    sc:citation <https://doi.org/10.1016/J.ECOENV.2022.113728>,
+        "pubmed:35689888" ;
+    sc:description "A machine learning and image analysis based application to automate the sea urchin embryo test." ;
+    sc:featureList edam:operation_3443 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "SETApp" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/UPV-EHU-IBeA/SETApp" .
+
 <https://bio.tools/sete> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2830,
         edam:topic_3306,
@@ -433873,7 +459658,7 @@ SETE is a novel lightweight TCR's binding Antigen prediction algorithm based on
     sc:url "https://github.com/wonanut/SETE" .
 
 <https://bio.tools/seten> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_3794 ;
@@ -433891,8 +459676,19 @@ SETE is a novel lightweight TCR's binding Antigen prediction algorithm based on
     biotools:primaryContact "Gungor Budak",
         "Sarath Chandra Janga" .
 
+<https://bio.tools/seth_1> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:citation <https://doi.org/10.1101/2022.06.23.497276> ;
+    sc:description "SETH is a novel method that predicts residue disorder from embeddings generated by the protein Language Model ProtT5, which explicitly only uses single sequences as input." ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "SETH_1" ;
+    sc:operatingSystem "Linux" ;
+    sc:url "https://github.com/DagmarIlz/SETH" .
+
 <https://bio.tools/setsapp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2259 ;
@@ -433908,14 +459704,13 @@ SETE is a novel lightweight TCR's binding Antigen prediction algorithm based on
 
 <https://bio.tools/setter> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1127" ;
-            sc:name "PDB ID" ;
-            sc:sameAs "http://edamontology.org/data_1127" ] ;
+            sc:additionalType "http://edamontology.org/data_1127" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "PDB ID" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0881" ;
-            sc:name "Secondary structure alignment (RNA)" ;
-            sc:sameAs "http://edamontology.org/data_0881" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0881" ;
+            sc:name "Secondary structure alignment (RNA)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0099 ;
@@ -433945,14 +459740,14 @@ SETE is a novel lightweight TCR's binding Antigen prediction algorithm based on
 
 <https://bio.tools/setuppromoter> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3168 ;
@@ -433969,8 +459764,18 @@ SETE is a novel lightweight TCR's binding Antigen prediction algorithm based on
     sc:url "https://galaxy.pasteur.fr/tool_runner?tool_id=toolshed.pasteur.fr/repos/fmareuil/promoteur_tools/setuppromoter/1.0" ;
     biotools:primaryContact "Galaxy Support Team" .
 
+<https://bio.tools/seurat> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:citation <https://doi.org/10.1016/j.cell.2021.04.048> ;
+    sc:description "Seurat is an R package designed for QC, analysis, and exploration of single-cell RNA-seq data. Seurat aims to enable users to identify and interpret sources of heterogeneity from single-cell transcriptomic measurements, and to integrate diverse types of single-cell data." ;
+    sc:isAccessibleForFree true ;
+    sc:name "Seurat" ;
+    sc:softwareHelp <https://satijalab.org/seurat/>,
+        <https://satijalab.org/seurat/articles/install.html> ;
+    sc:url "https://satijalab.org/seurat/" .
+
 <https://bio.tools/sevenbridges> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0622 ;
@@ -433988,7 +459793,7 @@ SETE is a novel lightweight TCR's binding Antigen prediction algorithm based on
     biotools:primaryContact "Nan Xiao" .
 
 <https://bio.tools/sevenc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0085,
         edam:topic_3169,
@@ -434011,7 +459816,7 @@ SETE is a novel lightweight TCR's binding Antigen prediction algorithm based on
     biotools:primaryContact "Jonas Ibn-Salem" .
 
 <https://bio.tools/sewal> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0092 ;
@@ -434025,7 +459830,7 @@ SETE is a novel lightweight TCR's binding Antigen prediction algorithm based on
     biotools:primaryContact "Pitt JN" .
 
 <https://bio.tools/sewer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0080,
@@ -434046,7 +459851,7 @@ SETE is a novel lightweight TCR's binding Antigen prediction algorithm based on
     biotools:primaryContact "Malay K Basu" .
 
 <https://bio.tools/sexdimorphism> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_3173,
         edam:topic_3399,
@@ -434060,7 +459865,7 @@ SETE is a novel lightweight TCR's binding Antigen prediction algorithm based on
     sc:url "https://immune-aging.jax.org" .
 
 <https://bio.tools/sfa-spa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0623,
@@ -434075,7 +459880,7 @@ SETE is a novel lightweight TCR's binding Antigen prediction algorithm based on
     sc:url "http://sourceforge.net/projects/spa-assembler/" .
 
 <https://bio.tools/sfcheck> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_2269,
@@ -434095,7 +459900,7 @@ SETE is a novel lightweight TCR's binding Antigen prediction algorithm based on
     sc:url "http://www.ccp4.ac.uk/html/sfcheck.html" .
 
 <https://bio.tools/sfdr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_2885,
@@ -434111,7 +459916,7 @@ SETE is a novel lightweight TCR's binding Antigen prediction algorithm based on
     sc:url "http://fisher.utstat.toronto.edu/sun/Software/SFDR/index.html" .
 
 <https://bio.tools/sfesa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -434128,7 +459933,7 @@ SETE is a novel lightweight TCR's binding Antigen prediction algorithm based on
     sc:url "http://prodata.swmed.edu/sfesa/sfesa.php" .
 
 <https://bio.tools/sff2fastq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0196,
@@ -434142,7 +459947,7 @@ SETE is a novel lightweight TCR's binding Antigen prediction algorithm based on
     biotools:primaryContact "Indraniel Das" .
 
 <https://bio.tools/sff_workbench> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0091 ;
     sc:description "SFF Workbench (Standard flowgram format , SFF Tools) is an easy to use SFF file viewer, editor and converter. It is the first and only SFF editor with graphic interface on the entire bioinformatics market! With this tool we wanted to help the biologists to concentrate on their work instead of wasting time poking commands in an obscure text console." ;
@@ -434155,14 +459960,12 @@ SETE is a novel lightweight TCR's binding Antigen prediction algorithm based on
 
 <https://bio.tools/sfinx> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2082" ;
-            sc:name "Matrix" ;
-            sc:sameAs "http://edamontology.org/data_2082" ] ;
+            sc:additionalType "http://edamontology.org/data_2082" ;
+            sc:name "Matrix" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0906" ;
-            sc:name "Protein interaction data" ;
-            sc:sameAs "http://edamontology.org/data_0906" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0906" ;
+            sc:name "Protein interaction data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121 ;
     sc:citation <https://doi.org/10.1021/acs.jproteome.5b00666>,
@@ -434179,7 +459982,7 @@ SETE is a novel lightweight TCR's binding Antigen prediction algorithm based on
     sc:url "http://sfinx.ugent.be/" .
 
 <https://bio.tools/sfmap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3125,
@@ -434202,7 +460005,7 @@ SETE is a novel lightweight TCR's binding Antigen prediction algorithm based on
     biotools:primaryContact "SFmap Support" .
 
 <https://bio.tools/sfmeb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3170,
@@ -434224,7 +460027,7 @@ SETE is a novel lightweight TCR's binding Antigen prediction algorithm based on
     sc:url "https://bioconductor.org/packages/MEB" .
 
 <https://bio.tools/sfold> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0130,
@@ -434244,7 +460047,7 @@ SETE is a novel lightweight TCR's binding Antigen prediction algorithm based on
     biotools:primaryContact "Contact form" .
 
 <https://bio.tools/sfrmaker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3068 ;
@@ -434258,7 +460061,7 @@ SETE is a novel lightweight TCR's binding Antigen prediction algorithm based on
     biotools:primaryContact <https://orcid.org/0000-0001-8784-4924> .
 
 <https://bio.tools/sfs_code> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3053,
         edam:topic_3056,
@@ -434274,7 +460077,7 @@ SETE is a novel lightweight TCR's binding Antigen prediction algorithm based on
     sc:url "http://sfscode.sourceforge.net/SFS_CODE/index/index.html" .
 
 <https://bio.tools/sg-adviser> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0659 ;
     sc:citation <https://doi.org/10.1186/s12859-017-1778-6> ;
@@ -434286,7 +460089,7 @@ SETE is a novel lightweight TCR's binding Antigen prediction algorithm based on
     biotools:primaryContact "Ali Torkamani" .
 
 <https://bio.tools/sg-cnn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3382,
         edam:topic_3474,
         edam:topic_3520 ;
@@ -434302,7 +460105,7 @@ Although group convolutions are increasingly used on deep convolutional neural n
     sc:url "https://github.com/QingbeiGuo/SG-CNN.git" .
 
 <https://bio.tools/sg-lstm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_2640,
         edam:topic_3474 ;
@@ -434315,7 +460118,7 @@ Although group convolutions are increasingly used on deep convolutional neural n
     sc:url "https://github.com/Xshelton/SG_LSTM" .
 
 <https://bio.tools/sga> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0622,
@@ -434331,7 +460134,7 @@ Although group convolutions are increasingly used on deep convolutional neural n
     biotools:primaryContact "Jared Simpson" .
 
 <https://bio.tools/sgatools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0625,
@@ -434348,7 +460151,7 @@ Although group convolutions are increasingly used on deep convolutional neural n
     biotools:primaryContact "SGAtools Support" .
 
 <https://bio.tools/sgd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0602,
@@ -434374,8 +460177,29 @@ Although group convolutions are increasingly used on deep convolutional neural n
     sc:softwareHelp <http://wiki.yeastgenome.org/index.php/Main_Page> ;
     sc:url "http://www.yeastgenome.org/" .
 
+<https://bio.tools/sgd-net> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_3384,
+        edam:topic_3444,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1016/J.NICL.2022.103044>,
+        "pmcid:PMC9123273",
+        "pubmed:35597030" ;
+    sc:description "Semantic segmentation guided detector for segmentation, classification, and lesion mapping of acute ischemic stroke in MRI images." ;
+    sc:featureList edam:operation_0479,
+        edam:operation_3096,
+        edam:operation_3799 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "SGD-Net" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/IlikeBB/SGD-Net" .
+
 <https://bio.tools/sgi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0654,
@@ -434390,7 +460214,7 @@ Although group convolutions are increasingly used on deep convolutional neural n
     sc:url "http://www.personal.psu.edu/nxm2/sgi2.htm" .
 
 <https://bio.tools/sgi-id> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3172,
@@ -434405,16 +460229,36 @@ Although group convolutions are increasingly used on deep convolutional neural n
     sc:url "https://github.com/krumsieklab/sgi" ;
     biotools:primaryContact <https://orcid.org/0000-0003-4734-3791> .
 
+<https://bio.tools/sgii> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0128,
+        edam:topic_0659,
+        edam:topic_2815,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.3389/FGENE.2022.864564>,
+        "pmcid:PMC8978670",
+        "pubmed:35386279" ;
+    sc:description "Systematic Identification of Essential lncRNAs in Mouse and Human Genome With lncRNA-Protein-Protein Heterogeneous Interaction Network." ;
+    sc:featureList edam:operation_3431,
+        edam:operation_3435,
+        edam:operation_3927 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "SGII" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/ninglolo/SGII" .
+
 <https://bio.tools/sgp2> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ] ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:name "Nucleic acid sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1276" ;
-            sc:name "Nucleic acid features" ;
-            sc:sameAs "http://edamontology.org/data_1276" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1276" ;
+            sc:name "Nucleic acid features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_3511 ;
@@ -434439,13 +460283,13 @@ Although group convolutions are increasingly used on deep convolutional neural n
     biotools:primaryContact "Francisco Camara" .
 
 <https://bio.tools/sgppools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "Sgppools adalah agen judi  togel online singapore 4D terbaik Indonesia dengan data keluaran prize 4d sgp pools online resmi melaui wla singapura. Link daftar bandar toto singapore pools serta agen judi togel sgp pool keluaran hari ini tercepat. Agen sgp pools menyediakan data pengeluaran singapore paling lengkap dan mudah di dapatkan. Situs toto sgp pools dengan diskon bettingan singapura 4d terbesar di Indonesia. Pengeluaran sgp hari ini tercepat, data pengeluaran sgp pools online hari ini, prediksi jitu sgp pools online, data keluaran togel sgp pools 4d, situs togel online sgp pools terpercaya." ;
     sc:name "Sgppools - Sgp Pools 4D - Data Sgp Prize - Togel Sgp Online" ;
     sc:url "https://ipabindia.org/sgp-pools/" .
 
 <https://bio.tools/sgrna-psm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_3895,
         edam:topic_3912 ;
@@ -434460,7 +460304,7 @@ Although group convolutions are increasingly used on deep convolutional neural n
     sc:url "http://bliulab.net/sgRNA-PSM/" .
 
 <https://bio.tools/sgrnacnn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0099,
@@ -434476,7 +460320,7 @@ Although group convolutions are increasingly used on deep convolutional neural n
     sc:url "https://github.com/nmt315320/sgRNACNN.git" .
 
 <https://bio.tools/sgrp_blast_server> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0625,
@@ -434499,18 +460343,18 @@ Although group convolutions are increasingly used on deep convolutional neural n
 
 <https://bio.tools/sgseq> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3495" ;
-            sc:name "RNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3495" ] ;
+            sc:additionalType "http://edamontology.org/data_3495" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "RNA sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1636" ;
-            sc:name "Heat map" ;
-            sc:sameAs "http://edamontology.org/data_1636" ],
+            sc:additionalType "http://edamontology.org/data_1636" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Heat map" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3170,
@@ -434531,7 +460375,7 @@ Although group convolutions are increasingly used on deep convolutional neural n
     biotools:primaryContact "Leonard Goldstein" .
 
 <https://bio.tools/sgtarget> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0122,
         edam:topic_0154,
@@ -434549,7 +460393,7 @@ Although group convolutions are increasingly used on deep convolutional neural n
     biotools:primaryContact "A. P. C. Rodrigues" .
 
 <https://bio.tools/sgtpy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -434565,7 +460409,7 @@ SGTPy is an open-source python package of SAFT-VR-Mie Equation of State (EOS). S
     sc:url "https://github.com/gustavochm/SGTPy" .
 
 <https://bio.tools/sgx> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0625,
@@ -434582,7 +460426,7 @@ SMac: Secure Genotype Imputation in Intel SGX.""" ;
     sc:url "https://github.com/ndokmai/sgx-genotype-imputation" .
 
 <https://bio.tools/sh3-hunter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0128,
@@ -434606,8 +460450,29 @@ SMac: Secure Genotype Imputation in Intel SGX.""" ;
     sc:url "http://cbm.bio.uniroma2.it/SH3-Hunter/" ;
     biotools:primaryContact "Enrico Ferraro" .
 
+<https://bio.tools/sh_matching> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2887" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Nucleic acid sequence record" ] ;
+    bsc:output [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1872" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Taxonomic classification" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_3050 ;
+    sc:description "UNITE SH matching analysis is a digital service for the global species discovery from eDNA (environmental DNA). SH matching service is based on the UNITE (https://unite.ut.ee) datasets hosted in PlutoF (https://plutof.ut.ee). Its output includes information about what species are present in eDNA samples, are they potentially undescribed new species, where are they found in other studies, are they alien or threatened species, etc. The output will provide DOI (Digital Object Identifier) based stable identifiers for the communicating species found in eDNA. DOIs are connected to the taxonomic backbone of PlutoF and GBIF (https://gbif.org)." ;
+    sc:featureList edam:operation_3460 ;
+    sc:isAccessibleForFree true ;
+    sc:license "CC-BY-SA-4.0" ;
+    sc:name "SH matching" ;
+    sc:operatingSystem "Linux" ;
+    sc:softwareVersion "1.0.0" ;
+    sc:url "https://github.com/TU-NHM/sh_matching_pub" .
+
 <https://bio.tools/shadowcaster> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3168,
         edam:topic_3293,
         edam:topic_3407 ;
@@ -434625,7 +460490,7 @@ A python implementation of a hybrid approach for the detection of horizontal gen
     sc:url "https://github.com/dani2s/ShadowCaster" .
 
 <https://bio.tools/shaep> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2275,
@@ -434641,7 +460506,7 @@ A python implementation of a hybrid approach for the detection of horizontal gen
     sc:url "http://users.abo.fi/mivainio/shaep/" .
 
 <https://bio.tools/shallowhrd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_2640,
         edam:topic_3673,
@@ -434660,14 +460525,13 @@ shallowHRD is a R script that can be launched from the command line. It relies o
 
 <https://bio.tools/shaman> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Report" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3174 ;
     sc:author "Amine Ghozlane",
@@ -434695,7 +460559,7 @@ shallowHRD is a R script that can be launched from the command line. It relies o
     biotools:primaryContact "SHAMAN team" .
 
 <https://bio.tools/shamsaraj> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0821,
         edam:topic_2258,
         edam:topic_3343,
@@ -434708,14 +460572,14 @@ shallowHRD is a R script that can be launched from the command line. It relies o
 
 <https://bio.tools/shap> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2301" ;
-            sc:name "SMILES string" ;
-            sc:sameAs "http://edamontology.org/data_2301" ] ;
+            sc:additionalType "http://edamontology.org/data_2301" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "SMILES string" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1270" ;
-            sc:name "Feature table" ;
-            sc:sameAs "http://edamontology.org/data_1270" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1270" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Feature table" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0209,
         edam:topic_0602,
@@ -434736,7 +460600,7 @@ shallowHRD is a R script that can be launched from the command line. It relies o
     sc:url "https://metstab-shap.matinf.uj.edu.pl/" .
 
 <https://bio.tools/shape> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0611,
         edam:topic_2275,
@@ -434752,7 +460616,7 @@ shallowHRD is a R script that can be launched from the command line. It relies o
     sc:url "http://shape.rcsb.org" .
 
 <https://bio.tools/shapeit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3516 ;
@@ -434768,7 +460632,7 @@ shallowHRD is a R script that can be launched from the command line. It relies o
     sc:url "https://mathgen.stats.ox.ac.uk/genetics_software/shapeit/shapeit.html" .
 
 <https://bio.tools/shaper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0097,
@@ -434789,8 +460653,34 @@ shallowHRD is a R script that can be launched from the command line. It relies o
         "Windows" ;
     sc:url "http://rna.physics.missouri.edu/shaper/" .
 
+<https://bio.tools/shapesorter> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_3495" ;
+            sc:name "RNA sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0082,
+        edam:topic_0084,
+        edam:topic_0097,
+        edam:topic_0099,
+        edam:topic_0632 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAC405>,
+        "pubmed:35641016" ;
+    sc:description "A fully probabilistic method for detecting conserved RNA structure features supported by SHAPE evidence." ;
+    sc:featureList edam:operation_0278,
+        edam:operation_0502,
+        edam:operation_0570,
+        edam:operation_2422,
+        edam:operation_2441 ;
+    sc:isAccessibleForFree true ;
+    sc:name "ShapeSorter" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://www.e-rna.org/shapesorter" .
+
 <https://bio.tools/sharcgs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196 ;
     sc:citation "pubmed:17908823" ;
@@ -434805,7 +460695,7 @@ shallowHRD is a R script that can be launched from the command line. It relies o
     biotools:primaryContact "Max Planck Institute for Molecular Genetics" .
 
 <https://bio.tools/shareloc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3047,
         edam:topic_3383,
@@ -434824,7 +460714,7 @@ shallowHRD is a R script that can be launched from the command line. It relies o
     sc:url "https://shareloc.xyz" .
 
 <https://bio.tools/sharenet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -434847,7 +460737,7 @@ shallowHRD is a R script that can be launched from the command line. It relies o
     sc:url "https://github.com/alexw16/sharenet" .
 
 <https://bio.tools/sharp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3170,
         edam:topic_3308,
@@ -434868,8 +460758,38 @@ Processing 1.3 Million Single Cells.""" ;
     sc:name "SHARP" ;
     sc:url "https://github.com/shibiaowan/SHARP" .
 
+<https://bio.tools/shasta> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_0925" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Sequence assembly" ] ;
+    bsc:output [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_0925" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Sequence assembly" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Suite" ;
+    sc:applicationSubCategory edam:topic_0196,
+        edam:topic_0622 ;
+    sc:citation <https://doi.org/10.1038/s41587-020-0503-6>,
+        "pmcid:PMC7483855",
+        "pubmed:32686750" ;
+    sc:description "De novo assembly from Oxford Nanopore reads." ;
+    sc:featureList edam:operation_0525 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "Shasta" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://chanzuckerberg.github.io/shasta/>,
+        <https://chanzuckerberg.github.io/shasta/QuickStart.html>,
+        <https://github.com/chanzuckerberg/.github/blob/master/CODE_OF_CONDUCT.md> ;
+    sc:url "https://github.com/chanzuckerberg/shasta" .
+
 <https://bio.tools/shatterproof> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0199,
@@ -434889,7 +460809,7 @@ Processing 1.3 Million Single Cells.""" ;
     biotools:primaryContact "Contact list" .
 
 <https://bio.tools/she-ra> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3837 ;
     sc:citation "pubmed:20676378" ;
@@ -434902,7 +460822,7 @@ Processing 1.3 Million Single Cells.""" ;
         "Shandrina Burns" .
 
 <https://bio.tools/shear> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0654,
@@ -434917,7 +460837,7 @@ Processing 1.3 Million Single Cells.""" ;
     sc:url "http://vk.cs.umn.edu/SHEAR/" .
 
 <https://bio.tools/sheep> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0166,
@@ -434934,12 +460854,20 @@ Processing 1.3 Million Single Cells.""" ;
     sc:url "http://mouse.belozersky.msu.ru/~evgeniy/cgi-bin/proton/proton.php?subproj=sheep" .
 
 <https://bio.tools/shelx> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0154,
         edam:topic_1317 ;
-    sc:citation <https://doi.org/10.1107/S0108767390000277> ;
+    sc:citation <https://doi.org/10.1107/S0108767307043930>,
+        <https://doi.org/10.1107/S0108767390000277>,
+        <https://doi.org/10.1107/S0907444909038360>,
+        <https://doi.org/10.1107/S2053229614024218>,
+        <https://doi.org/10.1107/s0907444902011678>,
+        "pubmed:12351820",
+        "pubmed:18156677",
+        "pubmed:20383001",
+        "pubmed:25567568" ;
     sc:description "Suite of programs for small molecule crystallography, direct method and refinement." ;
     sc:featureList edam:operation_0474 ;
     sc:isAccessibleForFree true ;
@@ -434952,8 +460880,30 @@ Processing 1.3 Million Single Cells.""" ;
     sc:softwareVersion "1" ;
     sc:url "https://shelx.uni-goettingen.de/" .
 
+<https://bio.tools/shepherd> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0199,
+        edam:topic_0654,
+        edam:topic_2640,
+        edam:topic_3168 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC395>,
+        "pmcid:PMC9344852",
+        "pubmed:35708611" ;
+    sc:description "Accurate Clustering for Correcting DNA Barcode Errors." ;
+    sc:featureList edam:operation_3200,
+        edam:operation_3432,
+        edam:operation_3472 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "Shepherd" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://www.github.com/Nik-Tavakolian/Shepherd" .
+
 <https://bio.tools/sherenga> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121 ;
     sc:citation <https://doi.org/10.1089/106652799318300> ;
@@ -434963,7 +460913,7 @@ Processing 1.3 Million Single Cells.""" ;
     sc:url "http://proteomics.broadinstitute.org/millhtml/batchsherengaframe.htm" .
 
 <https://bio.tools/sherlock> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_2259,
         edam:topic_3071 ;
@@ -434977,7 +460927,7 @@ Processing 1.3 Million Single Cells.""" ;
     biotools:primaryContact <https://orcid.org/0000-0003-1717-996X> .
 
 <https://bio.tools/sherman> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3168,
@@ -434993,7 +460943,7 @@ Processing 1.3 Million Single Cells.""" ;
     biotools:primaryContact "Simon Andrews" .
 
 <https://bio.tools/shermo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0593,
         edam:topic_3314 ;
@@ -435008,7 +460958,7 @@ Shermo is essentially open-source. The source code (written in Fortran) can be f
     sc:url "http://sobereva.com/soft/shermo" .
 
 <https://bio.tools/shiftcor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0593,
@@ -435024,7 +460974,7 @@ Shermo is essentially open-source. The source code (written in Fortran) can be f
     sc:url "http://shifty.wishartlab.com/" .
 
 <https://bio.tools/shiftcrypt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0593,
         edam:topic_0601,
@@ -435045,7 +460995,7 @@ These are the oxidised thioredoxins shown in the ShiftCrypt paper, the first one
     sc:url "http://www.bio2byte.be/shiftcrypt" .
 
 <https://bio.tools/shiftor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -435062,7 +461012,7 @@ These are the oxidised thioredoxins shown in the ShiftCrypt paper, the first one
     sc:url "http://wishart.biology.ualberta.ca/shiftor/cgi-bin/shiftor_1f.py" .
 
 <https://bio.tools/shifty> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0593,
@@ -435078,7 +461028,7 @@ These are the oxidised thioredoxins shown in the ShiftCrypt paper, the first one
     sc:url "http://shifty.wishartlab.com/" .
 
 <https://bio.tools/shigeifinder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0102,
@@ -435100,7 +461050,7 @@ This is a tool that is used to identify differentiate Shigella/EIEC using cluste
     sc:url "https://github.com/LanLab/ShigEiFinder" .
 
 <https://bio.tools/shinemas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0780,
         edam:topic_3489,
@@ -435117,7 +461067,7 @@ La forge Enseignement supérieur et Recherche.""" ;
     sc:url "https://sourcesup.renater.fr/projects/shinemas" .
 
 <https://bio.tools/shiny-deg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
         edam:topic_3170,
@@ -435132,7 +461082,7 @@ La forge Enseignement supérieur et Recherche.""" ;
     sc:url "https://github.com/sufangwang-npu/shiny-DEG" .
 
 <https://bio.tools/shiny-seq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0769,
         edam:topic_3170,
@@ -435150,7 +461100,7 @@ Abstract Objective A comprehensive analysis of RNA-Seq data uses a wide range of
     sc:url "https://beta.fastgenomics.org/analyses/detail-analysis-25cfdf63ed984ac3a3101de6b9253f0a#Run" .
 
 <https://bio.tools/shiny-sosv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_2640,
         edam:topic_3299,
@@ -435170,7 +461120,7 @@ Shiny-SoSV provides an interactive and visual platform for users to easily explo
     sc:url "https://hcpcg.shinyapps.io/Shiny-SoSV" .
 
 <https://bio.tools/shinyBN> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_2269,
         edam:topic_3382 ;
@@ -435188,7 +461138,7 @@ shinyBN is an R/Shiny application for interactive construction, inference and vi
     sc:url "https://jiajin.shinyapps.io/shinyBN/" .
 
 <https://bio.tools/shinyarchr_uio> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0749,
@@ -435207,7 +461157,7 @@ shinyBN is an R/Shiny application for interactive construction, inference and vi
     sc:url "https://github.com/EskelandLab/ShinyArchRUiO" .
 
 <https://bio.tools/shinybutchr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3170,
         edam:topic_3382 ;
@@ -435227,7 +461177,7 @@ ButchR is an R package providing functions to perform non-negative matrix factor
     sc:url "https://hdsu-bioquant.shinyapps.io/shinyButchR/" .
 
 <https://bio.tools/shinycell> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2229,
         edam:topic_3170 ;
@@ -435243,7 +461193,7 @@ ShinyCell is a R package that allows users to create interactive Shiny-based web
     sc:url "https://github.com/SGDDNB/ShinyCell" .
 
 <https://bio.tools/shinychromosome> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0622,
         edam:topic_0654,
@@ -435264,7 +461214,7 @@ interactive creation of non-circular whole genome diagram.""" ;
     sc:url "https://yimingyu.shinyapps.io/shinychromosome/" .
 
 <https://bio.tools/shinycircos> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0092,
@@ -435282,7 +461232,7 @@ interactive creation of non-circular whole genome diagram.""" ;
         "Yidan Ouyang" .
 
 <https://bio.tools/shinycurves> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0632,
         edam:topic_3519 ;
@@ -435297,7 +461247,7 @@ Quantitative RT-PCR amplification has been the gold-standard tool for viral dete
     sc:url "https://biosol.shinyapps.io/shinycurves/" .
 
 <https://bio.tools/shinydepmap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2229,
@@ -435321,7 +461271,7 @@ A resource of data and computational tools to expose the vulnerabilities of canc
     sc:url "https://labsyspharm.shinyapps.io/depmap" .
 
 <https://bio.tools/shinydiversity> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3056,
         edam:topic_3697 ;
@@ -435336,7 +461286,7 @@ A resource of data and computational tools to expose the vulnerabilities of canc
     sc:url "https://erictleung.shinyapps.io/shinydiversity" .
 
 <https://bio.tools/shinyepico> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library",
         "Web API" ;
@@ -435365,7 +461315,7 @@ DNAMethylation, DifferentialMethylation, Microarray, Preprocessing, QualityContr
     sc:url "http://bioconductor.org/packages/shinyepico/" .
 
 <https://bio.tools/shinygeo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0625,
@@ -435383,7 +461333,7 @@ DNAMethylation, DifferentialMethylation, Microarray, Preprocessing, QualityContr
     sc:url "http://gdancik.github.io/shinyGEO/" .
 
 <https://bio.tools/shinyheatmap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0203,
@@ -435403,10 +461353,9 @@ DNAMethylation, DifferentialMethylation, Microarray, Preprocessing, QualityContr
 
 <https://bio.tools/shinymb> a sc:SoftwareApplication ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3273" ;
-            sc:name "Sample ID" ;
-            sc:sameAs "http://edamontology.org/data_3273" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3273" ;
+            sc:name "Sample ID" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_2269 ;
@@ -435420,7 +461369,7 @@ DNAMethylation, DifferentialMethylation, Microarray, Preprocessing, QualityContr
     sc:url "https://fedematt.shinyapps.io/shinyMB" .
 
 <https://bio.tools/shinymethyl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3295,
@@ -435443,7 +461392,7 @@ DNAMethylation, DifferentialMethylation, Microarray, Preprocessing, QualityContr
     biotools:primaryContact "Jean-Philippe Fortin" .
 
 <https://bio.tools/shinyomics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
         edam:topic_3170,
@@ -435466,8 +461415,26 @@ ShinyOmics: Exploration of 'Omics' data.""" ;
     sc:name "ShinyOmics" ;
     sc:url "http://bioinformatics.bc.edu/shiny/ShinyOmics/" .
 
+<https://bio.tools/shinyoptik> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_2640,
+        edam:topic_2815 ;
+    sc:citation <https://doi.org/10.1200/CCI.21.00118>,
+        "pubmed:35015561" ;
+    sc:description "User-Friendly R Shiny Application for Visualizing Cancer Risk Factors and Mortality Across the University of Kansas Cancer Center Catchment Area." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3436 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "shinyOPTIK" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://optik.shinyapps.io/OPTIK" .
+
 <https://bio.tools/shinyscreen> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Web application" ;
     sc:applicationSubCategory edam:topic_2258,
@@ -435485,7 +461452,7 @@ help the user assess the quality of the spectra.""" ;
     biotools:primaryContact <https://orcid.org/0000-0001-6868-8145> .
 
 <https://bio.tools/shinysispa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -435498,8 +461465,26 @@ help the user assess the quality of the spectra.""" ;
         "Windows" ;
     sc:url "http://bbisr.shinyapps.winship.emory.edu/shinySISPA/" .
 
+<https://bio.tools/shinysyn> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_0654,
+        edam:topic_3382 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC503>,
+        "pubmed:35866686" ;
+    sc:description "A Shiny/R application for the interactive visualization and integration of macro- and micro-synteny data." ;
+    sc:featureList edam:operation_0337 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "ShinySyn" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/obenno/ShinySyn" .
+
 <https://bio.tools/shinytandem> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3168 ;
@@ -435517,7 +461502,7 @@ help the user assess the quality of the spectra.""" ;
     biotools:primaryContact "Frederic Fournier" .
 
 <https://bio.tools/shiprec> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0128,
@@ -435534,10 +461519,10 @@ help the user assess the quality of the spectra.""" ;
 
 <https://bio.tools/shoot> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_2200" ;
+            sc:name "Sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0623,
@@ -435563,22 +461548,22 @@ It searches your query sequence against a database of gene families and provides
 
 <https://bio.tools/shorah> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1383" ;
-            sc:name "Nucleic acid sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_1383" ],
+            sc:additionalType "http://edamontology.org/data_1383" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Nucleic acid sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3494" ;
-            sc:name "DNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3494" ] ;
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "DNA sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0920" ;
-            sc:name "Genotype/phenotype report" ;
-            sc:sameAs "http://edamontology.org/data_0920" ],
+            sc:additionalType "http://edamontology.org/data_1863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Haplotype map" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1863" ;
-            sc:name "Haplotype map" ;
-            sc:sameAs "http://edamontology.org/data_1863" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0920" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Genotype/phenotype report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3053,
         edam:topic_3168,
@@ -435612,7 +461597,7 @@ It searches your query sequence against a database of gene families and provides
     sc:url "https://github.com/cbg-ethz/shorah" .
 
 <https://bio.tools/shore> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_3175 ;
     sc:citation "pubmed:18818371" ;
@@ -435627,7 +461612,7 @@ It searches your query sequence against a database of gene families and provides
         "Stephan Ossowski" .
 
 <https://bio.tools/shoremap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0622,
@@ -435647,7 +461632,7 @@ It searches your query sequence against a database of gene families and provides
         "Korbinian Schneeberger" .
 
 <https://bio.tools/shortfuse> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_3168,
         edam:topic_3308,
@@ -435662,7 +461647,7 @@ It searches your query sequence against a database of gene families and provides
     biotools:primaryContact "Marcus Kinsella" .
 
 <https://bio.tools/shortread> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3168 ;
@@ -435685,7 +461670,7 @@ It searches your query sequence against a database of gene families and provides
     biotools:primaryContact "BioConductor Package Maintainer" .
 
 <https://bio.tools/shorty> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196 ;
     sc:citation "pubmed:19208115" ;
@@ -435699,7 +461684,7 @@ It searches your query sequence against a database of gene families and provides
         "Chandrakanth Reddy B" .
 
 <https://bio.tools/shot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3053,
@@ -435715,7 +461700,7 @@ It searches your query sequence against a database of gene families and provides
     sc:url "http://www.bork.embl-heidelberg.de/~korbel/SHOT_v2/" .
 
 <https://bio.tools/shotgun> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_3168,
@@ -435731,7 +461716,7 @@ It searches your query sequence against a database of gene families and provides
     sc:url "https://yunliweb.its.unc.edu//shotgun.html" .
 
 <https://bio.tools/shournal> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0769 ;
     sc:citation <https://doi.org/10.1101/2020.08.03.232843> ;
@@ -435749,14 +461734,14 @@ Using the external software shournal-to-snakemake an observed shell-command-seri
 
 <https://bio.tools/shovill> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3494" ;
-            sc:name "DNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3494" ] ;
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "DNA sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3494" ;
-            sc:name "DNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3494" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "DNA sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0622,
@@ -435782,7 +461767,7 @@ Using the external software shournal-to-snakemake an observed shell-command-seri
     sc:url "https://github.com/tseemann/shovill" .
 
 <https://bio.tools/show> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0160,
@@ -435800,26 +461785,21 @@ Using the external software shournal-to-snakemake an observed shell-command-seri
 
 <https://bio.tools/show_emfit> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1364" ;
-            sc:name "Hidden Markov model" ;
-            sc:sameAs "http://edamontology.org/data_1364" ],
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:name "Sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_1364" ;
+            sc:name "Hidden Markov model" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1276" ;
-            sc:name "Nucleic acid features" ;
-            sc:sameAs "http://edamontology.org/data_1276" ],
+            sc:additionalType "http://edamontology.org/data_1364" ;
+            sc:name "Hidden Markov model" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1364" ;
-            sc:name "Hidden Markov model" ;
-            sc:sameAs "http://edamontology.org/data_1364" ],
+            sc:additionalType "http://edamontology.org/data_1276" ;
+            sc:name "Nucleic acid features" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0951" ;
-            sc:name "Statistical estimate score" ;
-            sc:sameAs "http://edamontology.org/data_0951" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0951" ;
+            sc:name "Statistical estimate score" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0160 ;
     sc:citation <https://doi.org/10.1038/nbt1160> ;
@@ -435838,18 +461818,15 @@ Using the external software shournal-to-snakemake an observed shell-command-seri
 
 <https://bio.tools/show_simul> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1364" ;
-            sc:name "Hidden Markov model" ;
-            sc:sameAs "http://edamontology.org/data_1364" ],
+            sc:additionalType "http://edamontology.org/data_1249" ;
+            sc:name "Sequence length" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1249" ;
-            sc:name "Sequence length" ;
-            sc:sameAs "http://edamontology.org/data_1249" ] ;
+            sc:additionalType "http://edamontology.org/data_1364" ;
+            sc:name "Hidden Markov model" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:name "Nucleic acid sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0160 ;
     sc:citation <https://doi.org/10.1038/nbt1160> ;
@@ -435866,18 +461843,15 @@ Using the external software shournal-to-snakemake an observed shell-command-seri
 
 <https://bio.tools/show_viterbi> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1364" ;
-            sc:name "Hidden Markov model" ;
-            sc:sameAs "http://edamontology.org/data_1364" ],
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:name "Nucleic acid sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ] ;
+            sc:additionalType "http://edamontology.org/data_1364" ;
+            sc:name "Hidden Markov model" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1276" ;
-            sc:name "Nucleic acid features" ;
-            sc:sameAs "http://edamontology.org/data_1276" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1276" ;
+            sc:name "Nucleic acid features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0160 ;
     sc:citation <https://doi.org/10.1038/nbt1160> ;
@@ -435895,18 +461869,15 @@ Using the external software shournal-to-snakemake an observed shell-command-seri
 
 <https://bio.tools/showalign> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:name "Sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0874" ;
-            sc:name "Comparison matrix" ;
-            sc:sameAs "http://edamontology.org/data_0874" ] ;
+            sc:additionalType "http://edamontology.org/data_0874" ;
+            sc:name "Comparison matrix" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:name "Sequence alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0097 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -435937,7 +461908,7 @@ Using the external software shournal-to-snakemake an observed shell-command-seri
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/showalign.html" .
 
 <https://bio.tools/showalign_ws_husar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1186/2041-1480-2-S1-S5> ;
@@ -435953,10 +461924,9 @@ Using the external software shournal-to-snakemake an observed shell-command-seri
 
 <https://bio.tools/showdb> a sc:SoftwareApplication ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0957" ;
-            sc:name "Database metadata" ;
-            sc:sameAs "http://edamontology.org/data_0957" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0957" ;
+            sc:name "Database metadata" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -435987,14 +461957,12 @@ Using the external software shournal-to-snakemake an observed shell-command-seri
 
 <https://bio.tools/showfeat> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:name "Sequence features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0160 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -436025,14 +461993,12 @@ Using the external software shournal-to-snakemake an observed shell-command-seri
 
 <https://bio.tools/showorf> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1276" ;
-            sc:name "Nucleic acid features" ;
-            sc:sameAs "http://edamontology.org/data_1276" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1276" ;
+            sc:name "Nucleic acid features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -436065,14 +462031,12 @@ Using the external software shournal-to-snakemake an observed shell-command-seri
 
 <https://bio.tools/showpep> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2886" ;
-            sc:name "Protein sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2886" ] ;
+            sc:additionalType "http://edamontology.org/data_2886" ;
+            sc:name "Protein sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:name "Protein features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0092 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -436103,14 +462067,12 @@ Using the external software shournal-to-snakemake an observed shell-command-seri
 
 <https://bio.tools/showseq> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2887" ;
-            sc:name "Nucleic acid sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2887" ] ;
+            sc:additionalType "http://edamontology.org/data_2887" ;
+            sc:name "Nucleic acid sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1276" ;
-            sc:name "Nucleic acid features" ;
-            sc:sameAs "http://edamontology.org/data_1276" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1276" ;
+            sc:name "Nucleic acid features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -436143,10 +462105,9 @@ Using the external software shournal-to-snakemake an observed shell-command-seri
 
 <https://bio.tools/showserver> a sc:SoftwareApplication ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0957" ;
-            sc:name "Database metadata" ;
-            sc:sameAs "http://edamontology.org/data_0957" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0957" ;
+            sc:name "Database metadata" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -436176,7 +462137,7 @@ Using the external software shournal-to-snakemake an observed shell-command-seri
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/showserver.html" .
 
 <https://bio.tools/shrec> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3168,
@@ -436193,7 +462154,7 @@ Using the external software shournal-to-snakemake an observed shell-command-seri
     biotools:primaryContact "Schröder J" .
 
 <https://bio.tools/shrimp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0196,
@@ -436208,7 +462169,7 @@ Using the external software shournal-to-snakemake an observed shell-command-seri
     biotools:primaryContact "Shrimp Support" .
 
 <https://bio.tools/shrimpgpat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0219,
@@ -436227,16 +462188,36 @@ Using the external software shournal-to-snakemake an observed shell-command-seri
     sc:url "http://shrimpgpat.sc.mahidol.ac.th/ShrimpGPATV2/" ;
     biotools:primaryContact "Contact form" .
 
+<https://bio.tools/shrinksam> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1916" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
+            sc:name "Alignment" ] ;
+    bsc:output [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1916" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
+            sc:name "Alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Desktop application" ;
+    sc:applicationSubCategory edam:topic_0102 ;
+    sc:description "C++ program to shrink the SAM file after a read-mapping" ;
+    sc:featureList edam:operation_0233 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "shrinksam" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/bcthomas/shrinksam" .
+
 <https://bio.tools/shuffleseq> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -436266,7 +462247,7 @@ Using the external software shournal-to-snakemake an observed shell-command-seri
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/shuffleseq.html" .
 
 <https://bio.tools/si-Fi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_3512,
         edam:topic_3523 ;
@@ -436283,22 +462264,22 @@ Using the external software shournal-to-snakemake an observed shell-command-seri
 
 <https://bio.tools/siamcat> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2082" ;
-            sc:name "Matrix" ;
-            sc:sameAs "http://edamontology.org/data_2082" ],
+            sc:additionalType "http://edamontology.org/data_2082" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Matrix" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2914" ;
-            sc:name "Sequence features metadata" ;
-            sc:sameAs "http://edamontology.org/data_2914" ] ;
+            sc:additionalType "http://edamontology.org/data_2914" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Sequence features metadata" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2082" ;
-            sc:name "Matrix" ;
-            sc:sameAs "http://edamontology.org/data_2082" ],
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3508" ;
+            sc:name "Plot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2082" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Matrix" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0622,
@@ -436324,7 +462305,7 @@ Using the external software shournal-to-snakemake an observed shell-command-seri
     biotools:primaryContact "Georg Zeller" .
 
 <https://bio.tools/siapopr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_3332,
@@ -436342,14 +462323,12 @@ Using the external software shournal-to-snakemake an observed shell-command-seri
 
 <https://bio.tools/sib-blast> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:name "Protein sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0857" ;
-            sc:name "Sequence search results" ;
-            sc:sameAs "http://edamontology.org/data_0857" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0857" ;
+            sc:name "Sequence search results" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_2275,
@@ -436368,7 +462347,7 @@ Using the external software shournal-to-snakemake an observed shell-command-seri
     biotools:primaryContact "Ralf Bundschuh" .
 
 <https://bio.tools/sibelia> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622 ;
     sc:citation <https://doi.org/10.1007/978-3-642-40453-5_17> ;
@@ -436385,7 +462364,7 @@ Using the external software shournal-to-snakemake an observed shell-command-seri
     biotools:primaryContact "Sibelia team" .
 
 <https://bio.tools/sibeliaz> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0102,
         edam:topic_0196,
@@ -436405,7 +462384,7 @@ SibeliaZ is a whole-genome alignment and locally-coliinear blocks construction p
     sc:url "https://github.com/medvedevgroup/SibeliaZ/" .
 
 <https://bio.tools/sibils> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0091,
         edam:topic_0769,
@@ -436425,7 +462404,7 @@ COVID-19 outbreak: explore our literature triage interface and APIs.""" ;
     sc:url "https://candy.hesge.ch/SIBiLS" .
 
 <https://bio.tools/sibis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0622,
@@ -436440,7 +462419,7 @@ COVID-19 outbreak: explore our literature triage interface and APIs.""" ;
     sc:url "http://www.lbgi.fr/~julie/SIBIS" .
 
 <https://bio.tools/siblink> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0634,
@@ -436454,7 +462433,7 @@ COVID-19 outbreak: explore our literature triage interface and APIs.""" ;
     sc:url "http://dmpi.duke.edu/siblink-v-30" .
 
 <https://bio.tools/sibmed> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0199,
@@ -436474,7 +462453,7 @@ COVID-19 outbreak: explore our literature triage interface and APIs.""" ;
     sc:url "http://csg.sph.umich.edu/boehnke/sibmed.php" .
 
 <https://bio.tools/sibsim4> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3308 ;
@@ -436488,7 +462467,7 @@ COVID-19 outbreak: explore our literature triage interface and APIs.""" ;
     biotools:primaryContact "Christian Iseli" .
 
 <https://bio.tools/sicario> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0769,
         edam:topic_3474,
@@ -436506,7 +462485,7 @@ Despite impressive improvement in the next-generation sequencing technology, rel
     sc:url "https://bitbucket.org/islam2059/sicario/src/master/" .
 
 <https://bio.tools/sicer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_3169,
         edam:topic_3173 ;
@@ -436521,14 +462500,14 @@ Despite impressive improvement in the next-generation sequencing technology, rel
 
 <https://bio.tools/sickle> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3572 ;
     sc:description "A  tool that uses sliding windows along with quality and length thresholds to determine when quality is sufficiently low to trim the 3'-end of reads and also determines when the quality is sufficiently high enough to trim the 5'-end of reads." ;
@@ -436539,16 +462518,39 @@ Despite impressive improvement in the next-generation sequencing technology, rel
     sc:softwareHelp <https://github.com/najoshi/sickle/blob/master/README.md> ;
     sc:url "https://github.com/najoshi/sickle" .
 
+<https://bio.tools/sicknessminer> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0089,
+        edam:topic_0218,
+        edam:topic_0634,
+        edam:topic_2640,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1186/S12859-021-04397-W>,
+        "pmcid:PMC8491382",
+        "pubmed:34607568" ;
+    sc:description "A deep-learning-driven text-mining tool to abridge disease-disease associations." ;
+    sc:featureList edam:operation_2422,
+        edam:operation_3280,
+        edam:operation_3625 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "SicknessMiner" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/MoreiraLAB/SicknessMiner" .
+
 <https://bio.tools/sictools> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Sequence alignment" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0951" ;
-            sc:name "Statistical estimate score" ;
-            sc:sameAs "http://edamontology.org/data_0951" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0951" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Statistical estimate score" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2640,
@@ -436568,7 +462570,7 @@ Despite impressive improvement in the next-generation sequencing technology, rel
     biotools:primaryContact "Xiaobin Xing" .
 
 <https://bio.tools/side-effects> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0209,
         edam:topic_3336,
@@ -436587,18 +462589,15 @@ Despite impressive improvement in the next-generation sequencing technology, rel
 
 <https://bio.tools/sider> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3668" ;
-            sc:name "Disease name" ;
-            sc:sameAs "http://edamontology.org/data_3668" ],
+            sc:additionalType "http://edamontology.org/data_3668" ;
+            sc:name "Disease name" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0984" ;
-            sc:name "Molecule name" ;
-            sc:sameAs "http://edamontology.org/data_0984" ] ;
+            sc:additionalType "http://edamontology.org/data_0984" ;
+            sc:name "Molecule name" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3275" ;
-            sc:name "Phenotype name" ;
-            sc:sameAs "http://edamontology.org/data_3275" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3275" ;
+            sc:name "Phenotype name" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_3303 ;
     sc:author "Michael Kuhn" ;
@@ -436622,7 +462621,7 @@ Despite impressive improvement in the next-generation sequencing technology, rel
     biotools:primaryContact "Michael Kuhn" .
 
 <https://bio.tools/sideretro> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0625,
         edam:topic_3512,
@@ -436641,7 +462640,7 @@ sideRETRO is a bioinformatic tool devoted for the detection of somatic retrocopy
     sc:url "https://github.com/galantelab/sideRETRO" .
 
 <https://bio.tools/sidirect> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0099,
@@ -436660,7 +462659,7 @@ sideRETRO is a bioinformatic tool devoted for the detection of somatic retrocopy
     biotools:primaryContact "K. Ui-Tei" .
 
 <https://bio.tools/sidr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3168 ;
@@ -436675,7 +462674,7 @@ sideRETRO is a bioinformatic tool devoted for the detection of somatic retrocopy
     biotools:primaryContact "Janna L. Fierst" .
 
 <https://bio.tools/siemens-dicom-sort-convert-nifti> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3304,
@@ -436695,22 +462694,20 @@ sideRETRO is a bioinformatic tool devoted for the detection of somatic retrocopy
 
 <https://bio.tools/siena> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ] ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein structure" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1497" ;
-            sc:name "Root-mean-square deviation" ;
-            sc:sameAs "http://edamontology.org/data_1497" ],
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein structure" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ],
+            sc:additionalType "http://edamontology.org/data_1384" ;
+            sc:name "Sequence alignment (protein)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1384" ;
-            sc:name "Sequence alignment (protein)" ;
-            sc:sameAs "http://edamontology.org/data_1384" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1497" ;
+            sc:name "Root-mean-square deviation" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_3336,
@@ -436732,7 +462729,7 @@ sideRETRO is a bioinformatic tool devoted for the detection of somatic retrocopy
     sc:url "http://proteinsplus.zbh.uni-hamburg.de/#siena" .
 
 <https://bio.tools/sierpinski-triangle-recursion> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:description "This function draws Sierpinski triangle by using recursion" ;
     sc:isAccessibleForFree true ;
@@ -436745,7 +462742,7 @@ sideRETRO is a bioinformatic tool devoted for the detection of somatic retrocopy
     biotools:primaryContact "Trong Hoang Vo" .
 
 <https://bio.tools/siesta> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0176,
         edam:topic_0611,
         edam:topic_0621,
@@ -436762,8 +462759,30 @@ SIESTA is both a method and its computer program implementation, to perform effi
     sc:softwareHelp <https://aiida-siesta-plugin.readthedocs.io/> ;
     sc:url "https://launchpad.net/siesta" .
 
+<https://bio.tools/sieve> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0099,
+        edam:topic_0203,
+        edam:topic_2229,
+        edam:topic_3170 ;
+    sc:citation <https://doi.org/10.1097/BS9.0000000000000072>,
+        "pmcid:PMC8974938",
+        "pubmed:35402832" ;
+    sc:description "Identifying robust single cell variable genes for single-cell RNA sequencing data." ;
+    sc:featureList edam:operation_0313,
+        edam:operation_3435,
+        edam:operation_3935 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "SIEVE" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/YinanZhang522/SIEVE" .
+
 <https://bio.tools/sift> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
@@ -436772,7 +462791,10 @@ SIESTA is both a method and its computer program implementation, to perform effi
         edam:topic_3325,
         edam:topic_3473 ;
     sc:citation <https://doi.org/10.1093/nar/gks539>,
+        <https://doi.org/10.1101/gr.176601>,
+        "pmcid:PMC311071",
         "pmcid:PMC3394338",
+        "pubmed:11337480",
         "pubmed:22689647" ;
     sc:description "Sorting Intolerant From Tolerant (SIFT) is a sequence homology-based tool that will predict whether an amino acid substitution will affect protein function." ;
     sc:featureList edam:operation_0477,
@@ -436790,7 +462812,7 @@ SIESTA is both a method and its computer program implementation, to perform effi
     biotools:primaryContact "Contact form" .
 
 <https://bio.tools/sift-pul> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -436812,7 +462834,7 @@ SIESTA is both a method and its computer program implementation, to perform effi
     sc:url "http://sift-puls.org" .
 
 <https://bio.tools/sig2biopax> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0128,
@@ -436829,7 +462851,7 @@ SIESTA is both a method and its computer program implementation, to perform effi
     sc:url "https://code.google.com/p/sig2biopax/" .
 
 <https://bio.tools/sigQC> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_2640 ;
@@ -436856,14 +462878,14 @@ SIESTA is both a method and its computer program implementation, to perform effi
 
 <https://bio.tools/sigar> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3111" ;
-            sc:name "Processed microarray data" ;
-            sc:sameAs "http://edamontology.org/data_3111" ] ;
+            sc:additionalType "http://edamontology.org/data_3111" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "Processed microarray data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -436883,7 +462905,7 @@ SIESTA is both a method and its computer program implementation, to perform effi
     biotools:primaryContact "Wessel N. van Wieringen" .
 
 <https://bio.tools/sigcheck> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0625 ;
@@ -436902,14 +462924,12 @@ SIESTA is both a method and its computer program implementation, to perform effi
 
 <https://bio.tools/sigcleave> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2886" ;
-            sc:name "Protein sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2886" ] ;
+            sc:additionalType "http://edamontology.org/data_2886" ;
+            sc:name "Protein sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:name "Protein features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3510 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -436938,8 +462958,31 @@ SIESTA is both a method and its computer program implementation, to perform effi
     sc:softwareVersion "r6" ;
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/sigcleave.html" .
 
+<https://bio.tools/sigcom_lincs> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0089,
+        edam:topic_0202,
+        edam:topic_0203,
+        edam:topic_0602,
+        edam:topic_3170 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAC328>,
+        "pmcid:PMC9252724",
+        "pubmed:35524556" ;
+    sc:description "Data and metadata search engine for a million gene expression signatures." ;
+    sc:featureList edam:operation_2421,
+        edam:operation_2422,
+        edam:operation_2436,
+        edam:operation_3223 ;
+    sc:isAccessibleForFree true ;
+    sc:name "SigCom LINCS" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://maayanlab.cloud/sigcom-lincs" .
+
 <https://bio.tools/sigfeature> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2640,
         edam:topic_3170,
@@ -436961,7 +463004,7 @@ This package provides a novel feature selection algorithm for binary classificat
     sc:url "https://bioconductor.org/packages/sigFeature/" .
 
 <https://bio.tools/sigflow> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0769,
         edam:topic_2640 ;
@@ -436979,7 +463022,7 @@ Sigflow provides useful mutational signature analysis workflows. It can auto-ext
     sc:url "https://github.com/ShixiangWang/sigminer.workflow" .
 
 <https://bio.tools/sigfuge> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -437000,7 +463043,7 @@ Sigflow provides useful mutational signature analysis workflows. It can auto-ext
     biotools:primaryContact "Patrick Kimes" .
 
 <https://bio.tools/siggenes> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -437020,7 +463063,7 @@ Sigflow provides useful mutational signature analysis workflows. It can auto-ext
     biotools:primaryContact "Holger Schwender" .
 
 <https://bio.tools/sights> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library",
         "Suite" ;
@@ -437044,7 +463087,7 @@ Sigflow provides useful mutational signature analysis workflows. It can auto-ext
     biotools:primaryContact "Elika Garg" .
 
 <https://bio.tools/sighunt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0622,
@@ -437060,7 +463103,7 @@ Sigflow provides useful mutational signature analysis workflows. It can auto-ext
     sc:url "http://www.iba.muni.cz/index-en.php?pg=research--data-analysis-tools--sighunt" .
 
 <https://bio.tools/siglasso> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0622,
         edam:topic_2640,
@@ -437083,7 +463126,7 @@ Moreover, it parameterizes the model empirically. Let the data speak for itself.
     sc:url "http://github.com/gersteinlab/siglasso" .
 
 <https://bio.tools/sigma> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3168,
@@ -437098,7 +463141,7 @@ Moreover, it parameterizes the model empirically. Let the data speak for itself.
     sc:url "http://sigma.omicsbio.org/" .
 
 <https://bio.tools/sigma-m> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3315,
@@ -437115,10 +463158,10 @@ Moreover, it parameterizes the model empirically. Let the data speak for itself.
 
 <https://bio.tools/sigma70pred> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Nucleic acid sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0749,
@@ -437137,7 +463180,7 @@ Moreover, it parameterizes the model empirically. Let the data speak for itself.
     sc:url "https://webs.iiitd.edu.in/raghava/sigma70pred/" .
 
 <https://bio.tools/sigma_align> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0622,
@@ -437154,7 +463197,7 @@ Moreover, it parameterizes the model empirically. Let the data speak for itself.
     sc:url "http://www.imsc.res.in/~rsidd/sigma/" .
 
 <https://bio.tools/sigminer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2533,
         edam:topic_2640,
@@ -437171,7 +463214,7 @@ Moreover, it parameterizes the model empirically. Let the data speak for itself.
     sc:url "https://github.com/ShixiangWang/sigminer" .
 
 <https://bio.tools/sigmod> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0634,
@@ -437188,7 +463231,7 @@ Moreover, it parameterizes the model empirically. Let the data speak for itself.
     biotools:primaryContact "Yuanlong Liu" .
 
 <https://bio.tools/sigmoid> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3374,
         edam:topic_3409 ;
@@ -437204,7 +463247,7 @@ Moreover, it parameterizes the model empirically. Let the data speak for itself.
     biotools:primaryContact "Shmuel Dr. Naaman" .
 
 <https://bio.tools/signac> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0625,
         edam:topic_2229,
@@ -437230,7 +463273,7 @@ Signac is an extension of Seurat for the analysis of single-cell chromatin data.
     sc:url "https://satijalab.org/signac/" .
 
 <https://bio.tools/signacx> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0634,
@@ -437252,7 +463295,7 @@ SignacX is software developed and maintained by the Savova lab at Sanofi with a
     sc:url "https://github.com/mathewchamberlain/SignacX" .
 
 <https://bio.tools/signal> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0602,
@@ -437267,7 +463310,7 @@ SignacX is software developed and maintained by the Savova lab at Sanofi with a
     biotools:primaryContact "Iain D.C. Fraser" .
 
 <https://bio.tools/signal-3l> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -437284,7 +463327,7 @@ SignacX is software developed and maintained by the Savova lab at Sanofi with a
     sc:url "http://www.csbio.sjtu.edu.cn/bioinf/Signal-3L/" .
 
 <https://bio.tools/signal-cf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3510,
@@ -437303,18 +463346,17 @@ SignacX is software developed and maintained by the Savova lab at Sanofi with a
 
 <https://bio.tools/signalalign> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ],
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:encodingFormat "http://edamontology.org/format_2546" ;
+            sc:name "Sequence record" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2093" ;
-            sc:name "Data reference" ;
-            sc:sameAs "http://edamontology.org/data_2093" ] ;
+            sc:additionalType "http://edamontology.org/data_2093" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Data reference" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_2269,
@@ -437332,20 +463374,42 @@ SignacX is software developed and maintained by the Savova lab at Sanofi with a
     sc:url "https://github.com/ArtRand/signalAlign" ;
     biotools:primaryContact "Arthur C Rand" .
 
+<https://bio.tools/signalink3> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0601,
+        edam:topic_0602,
+        edam:topic_0659,
+        edam:topic_0749,
+        edam:topic_3500 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAB909>,
+        "pmcid:PMC8728204",
+        "pubmed:34634810" ;
+    sc:description "A multi-layered resource to uncover tissue-specific signaling networks." ;
+    sc:featureList edam:operation_0417,
+        edam:operation_0533,
+        edam:operation_1781,
+        edam:operation_3216 ;
+    sc:isAccessibleForFree true ;
+    sc:name "SignaLink3" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://signalink.org/" .
+
 <https://bio.tools/signalp> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ],
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:encodingFormat "http://edamontology.org/format_2305" ;
+            sc:name "Protein features" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2955" ;
-            sc:name "Sequence report" ;
-            sc:sameAs "http://edamontology.org/data_2955" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2955" ;
+            sc:name "Sequence report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_3510 ;
@@ -437368,7 +463432,7 @@ SignacX is software developed and maintained by the Savova lab at Sanofi with a
     biotools:primaryContact <http://orcid.org/0000-0002-9412-9643> .
 
 <https://bio.tools/signalspider> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Script" ;
     sc:applicationSubCategory edam:topic_0078,
@@ -437385,7 +463449,7 @@ SignacX is software developed and maintained by the Savova lab at Sanofi with a
     sc:url "http://www.cs.toronto.edu/~wkc/SignalSpider/" .
 
 <https://bio.tools/signalviewer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3512,
         edam:topic_3518 ;
@@ -437400,7 +463464,7 @@ SignacX is software developed and maintained by the Savova lab at Sanofi with a
     sc:url "http://qge.fhcrc.org/signalviewer/" .
 
 <https://bio.tools/signature> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_3293 ;
@@ -437420,7 +463484,7 @@ SignacX is software developed and maintained by the Savova lab at Sanofi with a
     biotools:primaryContact "Dr. Bas E. Dutilh" .
 
 <https://bio.tools/signature_matrix> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3170,
         edam:topic_3308 ;
@@ -437434,7 +463498,7 @@ SignacX is software developed and maintained by the Savova lab at Sanofi with a
     sc:url "https://github.com/wuaipinglab/ImmuCC/tree/master/tissue_immucc/SignatureMatrix" .
 
 <https://bio.tools/signaturesearch> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0202,
         edam:topic_0203,
@@ -437454,7 +463518,7 @@ This package implements algorithms and data structures for performing gene expre
     sc:url "https://bioconductor.org/packages/signatureSearch" .
 
 <https://bio.tools/signer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -437475,7 +463539,7 @@ This package implements algorithms and data structures for performing gene expre
     biotools:primaryContact "Renan Valieris" .
 
 <https://bio.tools/signet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602 ;
@@ -437494,7 +463558,7 @@ This package implements algorithms and data structures for performing gene expre
     biotools:primaryContact "Alexandre Gouy" .
 
 <https://bio.tools/significance-analysis-microarrays-matlab> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0203,
@@ -437513,14 +463577,14 @@ This package implements algorithms and data structures for performing gene expre
 
 <https://bio.tools/signisite> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0920" ;
-            sc:name "Genotype/phenotype report" ;
-            sc:sameAs "http://edamontology.org/data_0920" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0920" ;
+            sc:encodingFormat "http://edamontology.org/format_2333" ;
+            sc:name "Genotype/phenotype report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0625 ;
@@ -437539,14 +463603,14 @@ This package implements algorithms and data structures for performing gene expre
 
 <https://bio.tools/signor> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2526" ;
-            sc:name "Text data" ;
-            sc:sameAs "http://edamontology.org/data_2526" ] ;
+            sc:additionalType "http://edamontology.org/data_2526" ;
+            sc:encodingFormat "http://edamontology.org/format_3242" ;
+            sc:name "Text data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Pathway or network" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3325 ;
@@ -437578,7 +463642,7 @@ This package implements algorithms and data structures for performing gene expre
     biotools:primaryContact "Livia Perfetto" .
 
 <https://bio.tools/sigpathway> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -437599,7 +463663,7 @@ This package implements algorithms and data structures for performing gene expre
     biotools:primaryContact "Weil Lai" .
 
 <https://bio.tools/sigprofiler> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0622,
@@ -437616,7 +463680,7 @@ This package implements algorithms and data structures for performing gene expre
     biotools:primaryContact "Ludmil Alexandrov" .
 
 <https://bio.tools/sigreannot-mart> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0632,
@@ -437638,7 +463702,7 @@ This package implements algorithms and data structures for performing gene expre
     biotools:primaryContact "François Moreews" .
 
 <https://bio.tools/sigsquared> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:description "By leveraging statistical properties (log-rank test for survival) of patient cohorts defined by binary thresholds, poor-prognosis patients are identified by the sigsquared package via optimization over a cost function reducing type I and II error." ;
@@ -437656,7 +463720,7 @@ This package implements algorithms and data structures for performing gene expre
     biotools:primaryContact "UnJin Lee" .
 
 <https://bio.tools/sigtools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3168,
@@ -437675,7 +463739,7 @@ This package implements algorithms and data structures for performing gene expre
     sc:url "https://github.com/shohre73/sigtools" .
 
 <https://bio.tools/sigtree> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_3056,
@@ -437696,7 +463760,7 @@ This package implements algorithms and data structures for performing gene expre
     biotools:primaryContact "John R. Stevens" .
 
 <https://bio.tools/silactor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0121,
@@ -437711,7 +463775,7 @@ This package implements algorithms and data structures for performing gene expre
     sc:url "http://brucelab.gs.washington.edu/software.html" .
 
 <https://bio.tools/silclod> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0199,
@@ -437725,7 +463789,7 @@ This package implements algorithms and data structures for performing gene expre
     sc:url "http://www.imbs-luebeck.de/imbs/de/node/34" .
 
 <https://bio.tools/silencerdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0749,
         edam:topic_3173,
@@ -437751,14 +463815,12 @@ $ pip install tensorflow-gpu==1.15.2 #pip install tensorflow==1.15.2.""" ;
 
 <https://bio.tools/silent> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2887" ;
-            sc:name "Nucleic acid sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2887" ] ;
+            sc:additionalType "http://edamontology.org/data_2887" ;
+            sc:name "Nucleic acid sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1276" ;
-            sc:name "Nucleic acid features" ;
-            sc:sameAs "http://edamontology.org/data_1276" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1276" ;
+            sc:name "Nucleic acid features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3125 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -437788,7 +463850,7 @@ $ pip install tensorflow-gpu==1.15.2 #pip install tensorflow==1.15.2.""" ;
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/silent.html" .
 
 <https://bio.tools/silicon_microprobes> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0632,
         edam:topic_0749,
         edam:topic_3304,
@@ -437804,8 +463866,31 @@ Resources related to design, use, and sharing of silicon microprobes developed b
     sc:name "silicon microprobes" ;
     sc:url "https://github.com/sotmasman/Silicon-microprobes" .
 
+<https://bio.tools/silkbase> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0196,
+        edam:topic_0659,
+        edam:topic_3295,
+        edam:topic_3308,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.1093/DATABASE/BAAC040>,
+        "pmcid:PMC9216573",
+        "pubmed:35670730" ;
+    sc:description "An integrated transcriptomic and genomic database for Bombyx mori and related species." ;
+    sc:featureList edam:operation_0524,
+        edam:operation_0525,
+        edam:operation_2421,
+        edam:operation_3258 ;
+    sc:isAccessibleForFree true ;
+    sc:name "SilkBase" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://silkbase.ab.a.u-tokyo.ac.jp" .
+
 <https://bio.tools/silkdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
@@ -437828,7 +463913,7 @@ Resources related to design, use, and sharing of silicon microprobes developed b
     biotools:primaryContact "xiaqy@swu.edu.cn" .
 
 <https://bio.tools/siloco> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0769 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/bts311> ;
@@ -437844,62 +463929,62 @@ Resources related to design, use, and sharing of silicon microprobes developed b
 
 <https://bio.tools/silva> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ],
+            sc:additionalType "http://edamontology.org/data_2909" ;
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-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ],
+            sc:additionalType "http://edamontology.org/data_2977" ;
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-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ],
+            sc:additionalType "http://edamontology.org/data_1097" ;
+            sc:encodingFormat "http://edamontology.org/format_1964" ;
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         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1088" ;
-            sc:name "Article ID" ;
-            sc:sameAs "http://edamontology.org/data_1088" ],
+            sc:additionalType "http://edamontology.org/data_2977" ;
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-            sc:identifier "http://edamontology.org/data_2909" ;
-            sc:name "Organism name" ;
-            sc:sameAs "http://edamontology.org/data_2909" ],
+            sc:additionalType "http://edamontology.org/data_2977" ;
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         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1046" ;
-            sc:name "Strain name" ;
-            sc:sameAs "http://edamontology.org/data_1046" ],
+            sc:additionalType "http://edamontology.org/data_1088" ;
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+            sc:name "Article ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1097" ;
-            sc:name "Sequence accession (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1097" ],
+            sc:additionalType "http://edamontology.org/data_1868" ;
+            sc:encodingFormat "http://edamontology.org/format_1964" ;
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         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1868" ;
-            sc:name "Taxon" ;
-            sc:sameAs "http://edamontology.org/data_1868" ] ;
+            sc:additionalType "http://edamontology.org/data_1046" ;
+            sc:encodingFormat "http://edamontology.org/format_1964" ;
+            sc:name "Strain name" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1872" ;
-            sc:name "Taxonomic classification" ;
-            sc:sameAs "http://edamontology.org/data_1872" ],
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
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         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1383" ;
-            sc:name "Sequence alignment (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1383" ],
+            sc:additionalType "http://edamontology.org/data_2955" ;
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+            sc:name "Sequence report" ],
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-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ],
+            sc:additionalType "http://edamontology.org/data_1383" ;
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-            sc:identifier "http://edamontology.org/data_1383" ;
-            sc:name "Sequence alignment (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1383" ],
+            sc:additionalType "http://edamontology.org/data_1383" ;
+            sc:encodingFormat "http://edamontology.org/format_1984" ;
+            sc:name "Sequence alignment (nucleic acid)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2955" ;
-            sc:name "Sequence report" ;
-            sc:sameAs "http://edamontology.org/data_2955" ],
+            sc:additionalType "http://edamontology.org/data_1872" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Taxonomic classification" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1383" ;
-            sc:name "Sequence alignment (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1383" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1383" ;
+            sc:encodingFormat "http://edamontology.org/format_1984" ;
+            sc:name "Sequence alignment (nucleic acid)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -437937,7 +464022,7 @@ Resources related to design, use, and sharing of silicon microprobes developed b
     sc:url "http://www.arb-silva.de" .
 
 <https://bio.tools/silva_tree_viewer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3293 ;
@@ -437955,34 +464040,33 @@ Resources related to design, use, and sharing of silicon microprobes developed b
 
 <https://bio.tools/silvangs> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ] ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Nucleic acid sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ],
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:name "Plot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ],
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:encodingFormat "http://edamontology.org/format_2333" ;
+            sc:name "Nucleic acid sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ],
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_3508" ;
+            sc:name "Report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2082" ;
-            sc:name "Matrix" ;
-            sc:sameAs "http://edamontology.org/data_2082" ],
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Nucleic acid sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ],
+            sc:additionalType "http://edamontology.org/data_2082" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Matrix" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1246" ;
-            sc:name "Sequence cluster (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1246" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1246" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence cluster (nucleic acid)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0637,
         edam:topic_3050,
@@ -438014,7 +464098,7 @@ Resources related to design, use, and sharing of silicon microprobes developed b
     sc:url "https://www.arb-silva.de/ngs/" .
 
 <https://bio.tools/silver> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3360,
@@ -438029,14 +464113,14 @@ Resources related to design, use, and sharing of silicon microprobes developed b
 
 <https://bio.tools/sim> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3245" ;
+            sc:name "Mass spectrometry spectra" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1772" ;
-            sc:name "Score" ;
-            sc:sameAs "http://edamontology.org/data_1772" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1772" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Score" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -438056,7 +464140,7 @@ Resources related to design, use, and sharing of silicon microprobes developed b
     biotools:primaryContact "Renee X. de Menezes" .
 
 <https://bio.tools/sim-it> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2885,
         edam:topic_3168,
         edam:topic_3175 ;
@@ -438072,22 +464156,22 @@ Sim-it: A structural variance and Nanopore/PacBio sequencing reads simulator."""
 
 <https://bio.tools/sim-xl> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ],
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3712" ;
+            sc:name "Mass spectrometry spectra" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0944" ;
-            sc:name "Peptide mass fingerprint" ;
-            sc:sameAs "http://edamontology.org/data_0944" ],
+            sc:additionalType "http://edamontology.org/data_1233" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence set (protein)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1233" ;
-            sc:name "Sequence set (protein)" ;
-            sc:sameAs "http://edamontology.org/data_1233" ] ;
+            sc:additionalType "http://edamontology.org/data_0944" ;
+            sc:encodingFormat "http://edamontology.org/format_3244" ;
+            sc:name "Peptide mass fingerprint" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0906" ;
-            sc:name "Protein interaction data" ;
-            sc:sameAs "http://edamontology.org/data_0906" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0906" ;
+            sc:encodingFormat "http://edamontology.org/format_3247" ;
+            sc:name "Protein interaction data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0128,
@@ -438109,7 +464193,7 @@ Sim-it: A structural variance and Nanopore/PacBio sequencing reads simulator."""
     sc:url "http://patternlabforproteomics.org/sim-xl" .
 
 <https://bio.tools/sim1000G> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0625,
@@ -438133,7 +464217,7 @@ Sim-it: A structural variance and Nanopore/PacBio sequencing reads simulator."""
     biotools:primaryContact "Apostolos Dimitromanolakis" .
 
 <https://bio.tools/sim3c> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3168,
@@ -438149,7 +464233,7 @@ Sim-it: A structural variance and Nanopore/PacBio sequencing reads simulator."""
     biotools:primaryContact "Aaron E Darling" .
 
 <https://bio.tools/sim4> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654,
@@ -438168,7 +464252,7 @@ Sim-it: A structural variance and Nanopore/PacBio sequencing reads simulator."""
     biotools:primaryContact "SIM4 Support" .
 
 <https://bio.tools/sim4cc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0797,
         edam:topic_3170 ;
@@ -438183,7 +464267,7 @@ Sim-it: A structural variance and Nanopore/PacBio sequencing reads simulator."""
     biotools:primaryContact "Liliana Florea" .
 
 <https://bio.tools/sim_expasy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121 ;
@@ -438200,18 +464284,15 @@ Sim-it: A structural variance and Nanopore/PacBio sequencing reads simulator."""
 
 <https://bio.tools/simap> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1096" ;
-            sc:name "Sequence accession (protein)" ;
-            sc:sameAs "http://edamontology.org/data_1096" ] ;
+            sc:additionalType "http://edamontology.org/data_1096" ;
+            sc:name "Sequence accession (protein)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1384" ;
-            sc:name "Sequence alignment (protein)" ;
-            sc:sameAs "http://edamontology.org/data_1384" ],
+            sc:additionalType "http://edamontology.org/data_1381" ;
+            sc:name "Sequence alignment (pair)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1381" ;
-            sc:name "Sequence alignment (pair)" ;
-            sc:sameAs "http://edamontology.org/data_1381" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1384" ;
+            sc:name "Sequence alignment (protein)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1093/nar/gkt970>,
@@ -438230,7 +464311,7 @@ Sim-it: A structural variance and Nanopore/PacBio sequencing reads simulator."""
     sc:url "http://cube.univie.ac.at/resources/simap" .
 
 <https://bio.tools/simap_ws> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3071 ;
@@ -438244,7 +464325,7 @@ Sim-it: A structural variance and Nanopore/PacBio sequencing reads simulator."""
     sc:url "http://liferay.csb.univie.ac.at/portal/web/simap/webservice" .
 
 <https://bio.tools/simassemblystage1> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196 ;
     sc:description "Perfectly aligns TranscriptSimulator reads to their nucleotide templates using read title inforamation, creating ideal simulated assembly of super contigs." ;
@@ -438256,14 +464337,14 @@ Sim-it: A structural variance and Nanopore/PacBio sequencing reads simulator."""
 
 <https://bio.tools/simat> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3245" ;
+            sc:name "Mass spectrometry spectra" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1772" ;
-            sc:name "Score" ;
-            sc:sameAs "http://edamontology.org/data_1772" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1772" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Score" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -438283,7 +464364,7 @@ Sim-it: A structural variance and Nanopore/PacBio sequencing reads simulator."""
     biotools:primaryContact "Mo R. Nezami Ranjbar" .
 
 <https://bio.tools/simatac> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_2229,
         edam:topic_3940 ;
@@ -438299,7 +464380,7 @@ simATAC is a framework provided as an R package that generates a single-cell Ass
     sc:url "https://github.com/bowang-lab/simATAC" .
 
 <https://bio.tools/simba> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102 ;
     sc:citation <https://doi.org/10.1186/S12859-016-1344-7>,
@@ -438317,7 +464398,7 @@ simATAC is a framework provided as an R package that generates a single-cell Ass
     biotools:primaryContact "Vasco A. C. Azevedo" .
 
 <https://bio.tools/simba-cractools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_3170 ;
@@ -438334,14 +464415,14 @@ simATAC is a framework provided as an R package that generates a single-cell Ass
 
 <https://bio.tools/simbindprofiles> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3117" ;
-            sc:name "Microarray hybridisation data" ;
-            sc:sameAs "http://edamontology.org/data_3117" ] ;
+            sc:additionalType "http://edamontology.org/data_3117" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Microarray hybridisation data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1276" ;
-            sc:name "Nucleic acid features" ;
-            sc:sameAs "http://edamontology.org/data_1276" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1276" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Nucleic acid features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3125,
@@ -438360,7 +464441,7 @@ simATAC is a framework provided as an R package that generates a single-cell Ass
     biotools:primaryContact "Bettina Fischer" .
 
 <https://bio.tools/simbiology> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344 ;
@@ -438376,7 +464457,7 @@ Modelling and Optimization, curve fit.""" ;
     biotools:primaryContact "Takafumi" .
 
 <https://bio.tools/simbiology-app-evaluating-pkpd-drug-efficacy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0202,
         edam:topic_3375 ;
@@ -438392,7 +464473,7 @@ Modelling and Optimization, curve fit.""" ;
     biotools:primaryContact "Anita" .
 
 <https://bio.tools/simbiology-covid-19-seir-model> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3068,
         edam:topic_3070,
@@ -438409,7 +464490,7 @@ Modelling and Optimization, curve fit.""" ;
     biotools:primaryContact "Fulden Buyukozturk" .
 
 <https://bio.tools/simbiology-model-pkpd-drugs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3301,
         edam:topic_3318,
@@ -438425,7 +464506,7 @@ Modelling and Optimization, curve fit.""" ;
     biotools:primaryContact "Fulden Buyukozturk" .
 
 <https://bio.tools/simbiology-pbpk-model-trichloroethylene> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0202,
@@ -438443,7 +464524,7 @@ Modelling and Optimization, curve fit.""" ;
     biotools:primaryContact "Fulden Buyukozturk" .
 
 <https://bio.tools/simbiology-pkpd-anticancer-drugs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3375 ;
@@ -438458,7 +464539,7 @@ Modelling and Optimization, curve fit.""" ;
     biotools:primaryContact "MathWorks SimBiology Team" .
 
 <https://bio.tools/simbiology-sbml-importer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2259 ;
@@ -438473,7 +464554,7 @@ Modelling and Optimization, curve fit.""" ;
     biotools:primaryContact "Jeremy Huard" .
 
 <https://bio.tools/simbiology-tmdd-model> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:citation <https://doi.org/10.1023/A:1014414520282> ;
     sc:description "SimBiology MATLAB implementation of the Target-Mediated Drug Disposition (TMDD) model." ;
@@ -438487,7 +464568,7 @@ Modelling and Optimization, curve fit.""" ;
     biotools:primaryContact "Fulden Buyukozturk" .
 
 <https://bio.tools/simbiologynca> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3375 ;
@@ -438502,7 +464583,7 @@ Modelling and Optimization, curve fit.""" ;
     biotools:primaryContact "MathWorks SimBiology Team" .
 
 <https://bio.tools/simbionet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2259 ;
     sc:citation <https://doi.org/10.1109/TCBB.2011.116> ;
@@ -438520,7 +464601,7 @@ Modelling and Optimization, curve fit.""" ;
     biotools:primaryContact "Barbara Di Camillo" .
 
 <https://bio.tools/simboost> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_2258,
@@ -438538,7 +464619,7 @@ Modelling and Optimization, curve fit.""" ;
     biotools:primaryContact "Martin Ester" .
 
 <https://bio.tools/simcal> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3307 ;
     sc:citation <https://doi.org/10.1186/s12859-018-2248-5> ;
@@ -438556,7 +464637,7 @@ Modelling and Optimization, curve fit.""" ;
     biotools:primaryContact "Tae Yong Kim" .
 
 <https://bio.tools/simcep> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_3360,
         edam:topic_3385,
@@ -438573,7 +464654,7 @@ Modelling and Optimization, curve fit.""" ;
     sc:url "http://www.cs.tut.fi/sgn/csb/simcep/index.html" .
 
 <https://bio.tools/simcluster> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -438588,7 +464669,7 @@ Modelling and Optimization, curve fit.""" ;
     sc:url "http://xerad.systemsbiology.net/simcluster/" .
 
 <https://bio.tools/simcomp-subcomp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0602,
@@ -438609,7 +464690,7 @@ Modelling and Optimization, curve fit.""" ;
     biotools:primaryContact "Contact Form" .
 
 <https://bio.tools/simconcept> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3345,
         edam:topic_3473,
@@ -438623,8 +464704,27 @@ Modelling and Optimization, curve fit.""" ;
     sc:softwareHelp <https://www.ncbi.nlm.nih.gov/research/bionlp/Tools/simconcept/> ;
     sc:url "http://www.ncbi.nlm.nih.gov/CBBresearch/Lu/Demo/SimConcept" .
 
+<https://bio.tools/simcov> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_2229,
+        edam:topic_3315,
+        edam:topic_3322,
+        edam:topic_3324 ;
+    sc:citation <https://doi.org/10.1371/JOURNAL.PCBI.1009735>,
+        "pmcid:PMC8740970",
+        "pubmed:34941862" ;
+    sc:description "Spatially distributed infection increases viral load in a computational model of SARS-CoV-2 lung infection." ;
+    sc:featureList edam:operation_0252,
+        edam:operation_2426,
+        edam:operation_3446 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Other" ;
+    sc:name "SIMCoV" ;
+    sc:url "https://github.com/AdaptiveComputationLab/simcov" .
+
 <https://bio.tools/simcovid> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3305,
@@ -438644,7 +464744,7 @@ Modelling and Optimization, curve fit.""" ;
     biotools:primaryContact "Ismael Abdulrahman" .
 
 <https://bio.tools/simdef> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0218,
@@ -438657,8 +464757,24 @@ Modelling and Optimization, curve fit.""" ;
     sc:softwareHelp <http://iwera.ir/~ahmad/dal/> ;
     sc:url "http://iwera.ir/~ahmad/dal/" .
 
+<https://bio.tools/simelit> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_3318,
+        edam:topic_3520 ;
+    sc:citation <https://doi.org/10.1021/JASMS.1C00301>,
+        "pubmed:35852821" ;
+    sc:description "A Novel GUI-Based Comprehensive Ion Trajectory Simulation Software for Mass Spectrometry." ;
+    sc:isAccessibleForFree true ;
+    sc:license "BSD-2-Clause" ;
+    sc:name "SimELIT" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/PNNL-Comp-Mass-Spec/SimELIT" .
+
 <https://bio.tools/simexpr2sampledata> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3307 ;
     sc:citation <https://doi.org/10.1371/journal.pone.0032200> ;
@@ -438675,7 +464791,7 @@ Modelling and Optimization, curve fit.""" ;
     biotools:primaryContact "Barbara Di Camillo" .
 
 <https://bio.tools/simextargid> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_1317,
         edam:topic_3077,
@@ -438695,7 +464811,7 @@ Modelling and Optimization, curve fit.""" ;
     biotools:primaryContact "Josie Hayes" .
 
 <https://bio.tools/simffpe> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3168,
         edam:topic_3175,
@@ -438718,7 +464834,7 @@ Modelling and Optimization, curve fit.""" ;
     sc:url "https://bioconductor.org/packages/release/bioc/html/SimFFPE.html" .
 
 <https://bio.tools/simflu> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0781,
         edam:topic_3053,
@@ -438735,7 +464851,7 @@ Modelling and Optimization, curve fit.""" ;
     sc:url "http://lcbb.snu.ac.kr/simflu/" .
 
 <https://bio.tools/simic> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0602,
         edam:topic_0625,
@@ -438755,7 +464871,7 @@ To run SimiC with Single-cell RNA-seq of a small test example, go to folder exma
     sc:url "https://github.com/jianhao2016/simicLASSO_git" .
 
 <https://bio.tools/similarity-index-genetic-band-profiles> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_3053 ;
@@ -438773,14 +464889,14 @@ To run SimiC with Single-cell RNA-seq of a small test example, go to folder exma
 
 <https://bio.tools/similarpeak> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Sequence alignment" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0865" ;
-            sc:name "Sequence similarity score" ;
-            sc:sameAs "http://edamontology.org/data_0865" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0865" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Sequence similarity score" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3169,
@@ -438800,14 +464916,12 @@ To run SimiC with Single-cell RNA-seq of a small test example, go to folder exma
 
 <https://bio.tools/simka> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2975" ;
-            sc:name "Nucleic acid sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_2975" ] ;
+            sc:additionalType "http://edamontology.org/data_2975" ;
+            sc:name "Nucleic acid sequence (raw)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0870" ;
-            sc:name "Sequence distance matrix" ;
-            sc:sameAs "http://edamontology.org/data_0870" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0870" ;
+            sc:name "Sequence distance matrix" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3174 ;
     sc:citation <https://doi.org/10.7717/peerj-cs.94> ;
@@ -438822,7 +464936,7 @@ To run SimiC with Single-cell RNA-seq of a small test example, go to folder exma
     sc:url "https://github.com/GATB/simka" .
 
 <https://bio.tools/simld> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2885,
         edam:topic_3053,
@@ -438837,7 +464951,7 @@ To run SimiC with Single-cell RNA-seq of a small test example, go to folder exma
     sc:url "http://sourceforge.net/projects/simld/" .
 
 <https://bio.tools/simlr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -438858,7 +464972,7 @@ To run SimiC with Single-cell RNA-seq of a small test example, go to folder exma
     biotools:primaryContact "Daniele Ramazzotti" .
 
 <https://bio.tools/simmap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0128,
@@ -438882,7 +464996,7 @@ To run SimiC with Single-cell RNA-seq of a small test example, go to folder exma
         "Kai-Cheng Hsu" .
 
 <https://bio.tools/simmsg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0654,
@@ -438896,7 +465010,7 @@ To run SimiC with Single-cell RNA-seq of a small test example, go to folder exma
     sc:url "https://github.com/melop/simMSG/" .
 
 <https://bio.tools/simmune> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Suite" ;
     sc:applicationSubCategory edam:topic_0602,
@@ -438914,7 +465028,7 @@ To run SimiC with Single-cell RNA-seq of a small test example, go to folder exma
     sc:url "http://www.niaid.nih.gov/labsandresources/labs/aboutlabs/lsb/Pages/simmuneproject.aspx" .
 
 <https://bio.tools/simngs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3168 ;
@@ -438927,8 +465041,31 @@ To run SimiC with Single-cell RNA-seq of a small test example, go to folder exma
     sc:softwareVersion "20130502" ;
     sc:url "http://www.ebi.ac.uk/goldman-srv/simNGS/" .
 
+<https://bio.tools/simpa> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0769,
+        edam:topic_3382,
+        edam:topic_3524 ;
+    sc:citation <https://doi.org/10.1117/1.JBO.27.8.083010>,
+        "pmcid:PMC8978263",
+        "pubmed:35380031" ;
+    sc:description "An open-source toolkit for simulation and image processing for photonics and acoustics." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_2426,
+        edam:operation_3443,
+        edam:operation_3799 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "SIMPA" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://simpa.readthedocs.io/en/develop/index.html> ;
+    sc:url "https://github.com/IMSY-DKFZ/simpa" .
+
 <https://bio.tools/simpati> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0625,
@@ -438950,7 +465087,7 @@ To run SimiC with Single-cell RNA-seq of a small test example, go to folder exma
     sc:url "https://github.com/LucaGiudice/Simpati" .
 
 <https://bio.tools/simped> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0625,
@@ -438966,7 +465103,7 @@ To run SimiC with Single-cell RNA-seq of a small test example, go to folder exma
     sc:url "http://bioinformatics.org/simped/" .
 
 <https://bio.tools/simpel> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0625,
@@ -438984,7 +465121,7 @@ SimPEL is short for Simulation-based Power Estimation for sequencing studies of
     sc:url "https://github.com/precisionomics/SimPEL" .
 
 <https://bio.tools/simpet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_0749,
@@ -439002,7 +465139,7 @@ SimPEL is short for Simulation-based Power Estimation for sequencing studies of
     biotools:primaryContact "Jesús Silva-Rodríguez" .
 
 <https://bio.tools/simphy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3053,
         edam:topic_3293,
@@ -439017,7 +465154,7 @@ SimPEL is short for Simulation-based Power Estimation for sequencing studies of
     sc:url "https://github.com/adamallo/SimPhy" .
 
 <https://bio.tools/simple-blast> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:description "A simple BLAST algorithm based on a simple dynamic programming strategy." ;
     sc:isAccessibleForFree true ;
@@ -439030,7 +465167,7 @@ SimPEL is short for Simulation-based Power Estimation for sequencing studies of
     biotools:primaryContact "Ligong Han" .
 
 <https://bio.tools/simple-epidemic-model> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3305,
@@ -439047,7 +465184,7 @@ SimPEL is short for Simulation-based Power Estimation for sequencing studies of
     biotools:primaryContact "Crista Arangala" .
 
 <https://bio.tools/simple-leaf-disease-detection> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3070,
@@ -439066,14 +465203,14 @@ SimPEL is short for Simulation-based Power Estimation for sequencing studies of
 
 <https://bio.tools/simpleaffy> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3110" ;
-            sc:name "Raw microarray data" ;
-            sc:sameAs "http://edamontology.org/data_3110" ] ;
+            sc:additionalType "http://edamontology.org/data_3110" ;
+            sc:encodingFormat "http://edamontology.org/format_1637" ;
+            sc:name "Raw microarray data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -439094,7 +465231,7 @@ SimPEL is short for Simulation-based Power Estimation for sequencing studies of
     biotools:primaryContact "Crispin Miller" .
 
 <https://bio.tools/simplect> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3306,
         edam:topic_3344,
@@ -439111,8 +465248,19 @@ SimPEL is short for Simulation-based Power Estimation for sequencing studies of
     sc:url "https://www.mathworks.com/matlabcentral/fileexchange/70572-simplect" ;
     biotools:primaryContact "Gianluca Iori" .
 
+<https://bio.tools/simpledsfviewer1> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:description """for characterizing protein thermal stability in different temperatures
+
+https://github.com/hscsun/SimpleDSFviewer-5.0.git
+
+
+https://onlinelibrary.wiley.com/action/downloadSupplement?doi=10.1002%2Fpro.3703&file=pro3703-sup-0001-Supinfo.docx""" ;
+    sc:name "SimpleDSFviewer" ;
+    sc:url "https://doi.org/10.1002/pro.3703" .
+
 <https://bio.tools/simpleforest> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0780 ;
     sc:citation <https://doi.org/10.1101/2021.07.29.454344> ;
     sc:description "SimpleForest is a comprehensive tool for 3D reconstruction of trees from forest plot point clouds." ;
@@ -439122,7 +465270,7 @@ SimPEL is short for Simulation-based Power Estimation for sequencing studies of
     sc:url "https://gitlab.com/SimpleForest/computree/" .
 
 <https://bio.tools/simplemap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0625,
         edam:topic_0769 ;
@@ -439141,7 +465289,7 @@ A Usefull tool to assist likage mapping software with the construction of high d
     sc:url "http://simplemap-aj.sourceforge.net/" .
 
 <https://bio.tools/simplemscanner> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3077,
         edam:topic_3304,
@@ -439158,7 +465306,7 @@ A Usefull tool to assist likage mapping software with the construction of high d
     biotools:primaryContact "Rob Campbell" .
 
 <https://bio.tools/simplephenotypes> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2269,
         edam:topic_2885,
@@ -439179,7 +465327,7 @@ Note that the data set used in all vignettes is already in numeric format. In ad
     sc:url "https://github.com/samuelbfernandes/simplePHENOTYPES" .
 
 <https://bio.tools/simplephy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3361,
         edam:topic_3372,
@@ -439194,7 +465342,7 @@ Because of the COVID-19 pandemic, researchers are facing unprecedented challenge
     sc:url "https://simplephy.psych.ucsb.edu/" .
 
 <https://bio.tools/simplesynteny> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0102,
@@ -439213,7 +465361,7 @@ Because of the COVID-19 pandemic, researchers are facing unprecedented challenge
     biotools:primaryContact "Dan Veltri" .
 
 <https://bio.tools/simplex> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_3050,
         edam:topic_3300,
@@ -439228,7 +465376,7 @@ Because of the COVID-19 pandemic, researchers are facing unprecedented challenge
     sc:url "https://github.com/LennonLab/Emergence" .
 
 <https://bio.tools/simpli> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0769,
         edam:topic_2229,
@@ -439246,7 +465394,7 @@ This will run SIMPLI on minimal example dataset distributed in this repository.
     biotools:primaryContact <https://orcid.org/0000-0002-9325-0900> .
 
 <https://bio.tools/simplifier> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0622,
@@ -439265,7 +465413,7 @@ This will run SIMPLI on minimal example dataset distributed in this repository.
         "Prof. Rommel Ramos" .
 
 <https://bio.tools/simplifyenrichment> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0621,
         edam:topic_2269 ;
@@ -439288,8 +465436,31 @@ Clustering, GO, GeneSetEnrichment, Software, Visualization.""" ;
     sc:name "simplifyEnrichment" ;
     sc:url "https://simplifyenrichment.github.io/" .
 
+<https://bio.tools/simplogo> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0160,
+        edam:topic_0623,
+        edam:topic_0736,
+        edam:topic_3293 ;
+    sc:citation <https://doi.org/10.1002/prot.26390>,
+        "pubmed:35668544" ;
+    sc:description "Generalizable strategy to analyze domains in the context of parent protein architecture." ;
+    sc:featureList edam:operation_0244,
+        edam:operation_0303,
+        edam:operation_0337,
+        edam:operation_3216 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "SimpLogo" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://www.github.com/clayfos/SimpLogo" .
+
 <https://bio.tools/simplot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_0781,
@@ -439303,8 +465474,28 @@ Clustering, GO, GeneSetEnrichment, Software, Visualization.""" ;
     sc:softwareHelp <http://sray.med.som.jhmi.edu/SCRoftware/simplot/> ;
     sc:url "http://sray.med.som.jhmi.edu/SCRoftware/simplot/" .
 
+<https://bio.tools/simplot_plusplus> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0203,
+        edam:topic_3293 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC287>,
+        "pubmed:35451456" ;
+    sc:description "A Python application for representing sequence similarity and detecting recombination." ;
+    sc:featureList edam:operation_0289,
+        edam:operation_0337,
+        edam:operation_0451 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "SimPlot++" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/Stephane-S/Simplot_PlusPlus" .
+
 <https://bio.tools/simra> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2885,
         edam:topic_3053,
@@ -439319,7 +465510,7 @@ Clustering, GO, GeneSetEnrichment, Software, Visualization.""" ;
     sc:url "https://github.com/ComputationalGenomics/SimRA" .
 
 <https://bio.tools/simrare> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0625,
@@ -439335,7 +465526,7 @@ Clustering, GO, GeneSetEnrichment, Software, Visualization.""" ;
     sc:url "https://code.google.com/p/simrare/" .
 
 <https://bio.tools/simreg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3053,
@@ -439351,7 +465542,7 @@ Clustering, GO, GeneSetEnrichment, Software, Visualization.""" ;
     sc:url "http://www4.stat.ncsu.edu/~jytzeng/software.php" .
 
 <https://bio.tools/simrna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0099 ;
@@ -439367,7 +465558,7 @@ Clustering, GO, GeneSetEnrichment, Software, Visualization.""" ;
     sc:url "http://genesilico.pl/software/stand-alone/simrna" .
 
 <https://bio.tools/simrvpedigree> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3305,
         edam:topic_3325,
@@ -439384,8 +465575,29 @@ Please note: this version of SimRVPedigree may be under construction. For the la
     sc:name "SimRVPedigree" ;
     sc:url "https://github.com/cnieuwoudt/SimRVPedigree" .
 
+<https://bio.tools/simscsntree> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0199,
+        edam:topic_0654,
+        edam:topic_2640,
+        edam:topic_3293 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC169>,
+        "pubmed:35311947" ;
+    sc:description "A simulator of single-cell DNA sequencing data." ;
+    sc:featureList edam:operation_0323,
+        edam:operation_3359,
+        edam:operation_3557 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "SimSCSnTree" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/compbiofan/SimSCSnTree.git" .
+
 <https://bio.tools/simsearch> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_2885,
         edam:topic_3168,
@@ -439409,7 +465621,7 @@ The SimSearch algorithm has been developed through a collaboration between Unive
     sc:url "https://deib-geco.github.io/simsearch-app/" .
 
 <https://bio.tools/simseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btv124> ;
@@ -439422,8 +465634,29 @@ The SimSearch algorithm has been developed through a collaboration between Unive
     sc:url "https://github.com/jstjohn/SimSeq" ;
     biotools:primaryContact "S. Benidt" .
 
+<https://bio.tools/simsi-transfer> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0080,
+        edam:topic_0121,
+        edam:topic_0154,
+        edam:topic_0601 ;
+    sc:citation <https://doi.org/10.1016/J.MCPRO.2022.100238>,
+        "pubmed:35462064" ;
+    sc:description "Software-assisted reduction of missing values in phosphoproteomic and proteomic isobaric labeling data using tandem mass spectrum clustering." ;
+    sc:featureList edam:operation_3631,
+        edam:operation_3634,
+        edam:operation_3641 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Apache-2.0" ;
+    sc:name "SIMSI-Transfer" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/kusterlab/SIMSI-Transfer" .
+
 <https://bio.tools/simsurvey> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0621,
         edam:topic_2229,
@@ -439446,7 +465679,7 @@ The SimSurvey package has been designed to facilitate simulations of sample surv
     sc:url "https://paulregular.github.io/SimSurvey/" .
 
 <https://bio.tools/simtandem> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -439462,7 +465695,7 @@ The SimSurvey package has been designed to facilitate simulations of sample surv
     sc:url "http://siret.ms.mff.cuni.cz/novak/simtandem/" .
 
 <https://bio.tools/simtext> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0218,
         edam:topic_0602,
         edam:topic_0769,
@@ -439483,7 +465716,7 @@ For all PMIDs in each row of a table the according abstracts are saved in additi
     sc:url "https://github.com/mgramm1/simtext" .
 
 <https://bio.tools/simtoolbox> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3382,
         edam:topic_3383,
@@ -439500,7 +465733,7 @@ For all PMIDs in each row of a table the according abstracts are saved in additi
     sc:url "http://mmtg.fel.cvut.cz/SIMToolbox/" .
 
 <https://bio.tools/simuG> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_2885,
@@ -439521,7 +465754,7 @@ For all PMIDs in each row of a table the according abstracts are saved in additi
     biotools:primaryContact "Jia-Xing Yue" .
 
 <https://bio.tools/simul6> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3307,
         edam:topic_3315,
@@ -439539,7 +465772,7 @@ For all PMIDs in each row of a table the according abstracts are saved in additi
     biotools:primaryContact <https://orcid.org/0000-0001-7425-0721> .
 
 <https://bio.tools/simulate> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2885,
@@ -439555,7 +465788,7 @@ For all PMIDs in each row of a table the according abstracts are saved in additi
     sc:url "http://www.jurgott.org/linkage/simulate.html" .
 
 <https://bio.tools/simulatorz> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0622 ;
@@ -439573,7 +465806,7 @@ For all PMIDs in each row of a table the according abstracts are saved in additi
     biotools:primaryContact "Yuqing Zhang" .
 
 <https://bio.tools/simulink-virus-simulator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344 ;
@@ -439588,7 +465821,7 @@ For all PMIDs in each row of a table the according abstracts are saved in additi
     biotools:primaryContact "Guy Rouleau" .
 
 <https://bio.tools/simulitis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3315,
@@ -439604,8 +465837,28 @@ For all PMIDs in each row of a table the according abstracts are saved in additi
     sc:url "https://www.mathworks.com/matlabcentral/fileexchange/74610-simulitis-a-coronavirus-simulation" ;
     biotools:primaryContact "Joshua Gafford" .
 
+<https://bio.tools/simultant> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_3071,
+        edam:topic_3315 ;
+    sc:citation <https://doi.org/10.1186/S12859-022-04728-5>,
+        "pmcid:PMC9124400",
+        "pubmed:35597909" ;
+    sc:description "simultaneous curve fitting of functions and differential equations using analytical gradient calculations." ;
+    sc:featureList edam:operation_2426,
+        edam:operation_3435 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "Simultant" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/juliusbierk/simultant" .
+
 <https://bio.tools/simurare> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_3053,
@@ -439620,7 +465873,7 @@ For all PMIDs in each row of a table the according abstracts are saved in additi
     sc:url "http://c2s2.yale.edu/software/simuRare/" .
 
 <https://bio.tools/simurg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_3056,
         edam:topic_3293 ;
@@ -439638,7 +465891,7 @@ simurg: Simulate a Bacterial Pangenome in R""" ;
     sc:url "https://github.com/iferres/simurg" .
 
 <https://bio.tools/simuscop> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0199,
         edam:topic_0622,
@@ -439661,7 +465914,7 @@ a novel next-generation sequencing simulator using position and genomic contexts
     sc:url "https://github.com/qasimyu/simuscop" .
 
 <https://bio.tools/simwalk> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3053 ;
@@ -439679,14 +465932,14 @@ a novel next-generation sequencing simulator using position and genomic contexts
 
 <https://bio.tools/sina> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ] ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Nucleic acid sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Nucleic acid sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0097,
@@ -439713,8 +465966,30 @@ Reference based multiple sequence alignment""" ;
         "1.5.0" ;
     sc:url "https://sina.readthedocs.io" .
 
+<https://bio.tools/sinaps> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0176,
+        edam:topic_3400 ;
+    sc:citation <https://doi.org/10.1021/ACS.JCIM.1C00854>,
+        "pmcid:PMC8966674",
+        "pubmed:35239339" ;
+    sc:description "A Software Tool for Analysis and Visualization of Interaction Networks of Molecular Dynamics Simulations." ;
+    sc:featureList edam:operation_0570,
+        edam:operation_2476,
+        edam:operation_3925 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "SINAPs" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://github.com/ParImmune/SINAPs/blob/main/SINAPs_V1_documentation.pdf> ;
+    sc:url "https://github.com/ParImmune/SINAPs" .
+
 <https://bio.tools/sinbase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0780,
@@ -439732,20 +466007,43 @@ Reference based multiple sequence alignment""" ;
     sc:url "http://ocri-genomics.org/Sinbase/" ;
     biotools:primaryContact "Zhang X" .
 
+<https://bio.tools/sincast> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0108,
+        edam:topic_0625,
+        edam:topic_2229,
+        edam:topic_3170,
+        edam:topic_3308 ;
+    sc:citation <https://doi.org/10.1101/2021.11.07.467660> ;
+    sc:description "A computational framework to predict cell identities in single cell transcriptomes using bulk atlases as references." ;
+    sc:featureList edam:operation_0224,
+        edam:operation_0314,
+        edam:operation_3436,
+        edam:operation_3557,
+        edam:operation_3891 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "Sincast" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/meiosis97/Sincast" .
+
 <https://bio.tools/sincell> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0872" ;
-            sc:name "Phylogenetic tree" ;
-            sc:sameAs "http://edamontology.org/data_0872" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
+            sc:additionalType "http://edamontology.org/data_0872" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Phylogenetic tree" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2589" ;
-            sc:name "Hierarchy" ;
-            sc:sameAs "http://edamontology.org/data_2589" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2589" ;
+            sc:encodingFormat "http://edamontology.org/format_2067" ;
+            sc:name "Hierarchy" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0099,
@@ -439770,7 +466068,7 @@ Reference based multiple sequence alignment""" ;
         <http://orcid.org/0000-0002-4832-6101> .
 
 <https://bio.tools/sinchet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_2640,
@@ -439788,7 +466086,7 @@ Reference based multiple sequence alignment""" ;
     biotools:primaryContact "Y. Ann Chen" .
 
 <https://bio.tools/sinex> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0621,
@@ -439807,35 +466105,32 @@ Single-exon coding sequences (CDSs), also known as 'single-exon genes' (SEGs), a
     sc:name "SinEx" ;
     sc:url "https://v2.sinex.cl/" .
 
-<https://bio.tools/single-cell_dna_methylation_sequencing> a sc:SoftwareApplication ;
-    sc:description "CD Genomics provides single-cell DNA methylation analysis to understand the heterogeneity of genome-wide 5-methylcytosine (5mC) patterns. CD Genomics’s Single-Cell Sequencing conference focuses on the links between cell variation in tissues and organ function and further elucidates the origins of diseases. If you have additional requirements or questions, please feel free to contact us." ;
-    sc:name "Single-cell DNA Methylation Sequencing" ;
-    sc:url "https://www.cd-genomics.com/single-cell-dna-methylation-sequencing.html" .
-
-<https://bio.tools/single-cell_rna_sequencing> a sc:SoftwareApplication ;
-    sc:description "CD Genomics provides robust transcriptome research service down to single-cell input levels in high-quality samples These global gene expression patterns in single cells already have dramatically advanced cell biology. CD Genomics’s Single-Cell Sequencing conference focuses on the links between cell variation in tissues and organ function and further elucidates the origins of diseases. If you have additional requirements or questions, please feel free to contact us." ;
-    sc:name "Single-cell RNA Sequencing" ;
-    sc:url "https://www.cd-genomics.com/single-cell-rna-sequencing.html" .
-
-<https://bio.tools/single-cell_sequencing> a sc:SoftwareApplication ;
-    sc:description "CD Genomics proprietary GenSeqTM Technology provides comprehensive Single-Cell Sequencing services. These global gene expression patterns in single cells already have dramatically advanced cell biology. CD Genomics’s Single-Cell Sequencing conference focuses on the links between cell variation in tissues and organ function and further elucidates the origins of diseases. If you have additional requirements or questions, please feel free to contact us." ;
-    sc:name "Single-Cell Sequencing" ;
-    sc:url "https://www.cd-genomics.com/Single-Cell-Sequencing.html" .
-
-<https://bio.tools/single_cell_studies> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_2229,
-        edam:topic_3173,
-        edam:topic_3308 ;
-    sc:citation <https://doi.org/10.1101/742304> ;
-    sc:description "> VERY_LOW CONFIDENCE! | > CORRECT NAME OF TOOL COULD ALSO BE 'collated' | A curated database reveals trends in single-cell transcriptomics | Single cell studies — What do you mean \"heterogeneity\"? | Visse funktioner i Excel kan ikke vises i Google Sheets og vil forsvinde, hvis du foretager ændringer | Submit information about a single cell publication | What do you mean \"heterogeneity\"? | The 'Single cell studies database' lists papers in single cell transcriptomics with several fields of manually curated metadata | The only required field is the DOI, but the other fields are very helpful | Number of reported cell types or clusters | B. Cauli, J. T. Porter, K. Tsuzuki, B. Lambolez, J. Rossier, B. Quenet, E. Audinat" ;
-    sc:featureList edam:operation_3431,
-        edam:operation_3446,
-        edam:operation_3800 ;
-    sc:name "single cell studies" ;
-    sc:url "http://www.nxn.se/single-cell-studies/gui" .
+<https://bio.tools/singan-seg> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Library" ;
+    sc:applicationSubCategory edam:topic_3303,
+        edam:topic_3384,
+        edam:topic_3444,
+        edam:topic_3452,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1371/JOURNAL.PONE.0267976>,
+        "pmcid:PMC9060378",
+        "pubmed:35500005" ;
+    sc:description "Synthetic training data generation for medical image segmentation." ;
+    sc:featureList edam:operation_3435,
+        edam:operation_3443,
+        edam:operation_3553 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "SinGAN-Seg" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://pypi.org/project/singan-seg-polyp/" .
 
 <https://bio.tools/singlecellexperiment> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3341 ;
     sc:description "Defines a S4 class for storing data from single-cell experiments. This includes specialized methods to store and retrieve spike-in information, dimensionality reduction coordinates and size factors for each cell, along with the usual metadata for genes and libraries." ;
@@ -439851,7 +466146,7 @@ Single-exon coding sequences (CDSs), also known as 'single-exon genes' (SEGs), a
     biotools:primaryContact "Davide Risso" .
 
 <https://bio.tools/singlecellhaystack> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2229,
         edam:topic_3170,
@@ -439876,7 +466171,7 @@ Identification of differentially expressed genes (DEGs) is a key step in single-
     sc:url "https://CRAN.R-project.org/package=singleCellHaystack" .
 
 <https://bio.tools/singlecelltk> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3170 ;
@@ -439896,7 +466191,7 @@ Identification of differentially expressed genes (DEGs) is a key step in single-
     biotools:primaryContact "David Jenkins" .
 
 <https://bio.tools/singlecellvr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3173,
         edam:topic_3308 ;
@@ -439914,7 +466209,7 @@ It can be used with our preprocessed datasets found at the link above or by foll
     sc:url "http://www.singlecellvr.com" .
 
 <https://bio.tools/singscore> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203 ;
     sc:description "A simple single-sample gene signature scoring method that uses rank-based statistics to analyze the sample's gene expression profile. It scores the expression activities of gene sets at a single-sample level." ;
@@ -439932,7 +466227,7 @@ It can be used with our preprocessed datasets found at the link above or by foll
     biotools:primaryContact "Ruqian Lyu" .
 
 <https://bio.tools/singularity_hub> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3524 ;
     sc:citation <https://doi.org/10.1371/journal.pone.0188511> ;
@@ -439947,7 +466242,7 @@ It can be used with our preprocessed datasets found at the link above or by foll
     biotools:primaryContact "Vanessa V. Sochat" .
 
 <https://bio.tools/sinimin> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0625,
         edam:topic_2269,
@@ -439966,7 +466261,7 @@ This repository contains the code for the Significant Network Interval Mining ap
     sc:url "https://github.com/BorgwardtLab/SiNIMin" .
 
 <https://bio.tools/sinoduplex> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0632,
         edam:topic_0654,
@@ -439986,7 +466281,7 @@ SinoDuplex is an improved duplex consensus sequence generation module. It increa
     sc:url "https://github.com/SinOncology/sinoduplex" .
 
 <https://bio.tools/sinuscor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_3303,
@@ -440006,7 +466301,7 @@ SinoDuplex is an improved duplex consensus sequence generation module. It increa
     biotools:primaryContact "Rhenan Bartels" .
 
 <https://bio.tools/sip> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0749,
         edam:topic_3169,
@@ -440025,7 +466320,7 @@ If you want run SIP with mcool file you need to install cooler: https://github.c
     sc:url "https://github.com/PouletAxel/SIP/releases" .
 
 <https://bio.tools/sipred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0659,
@@ -440041,7 +466336,7 @@ If you want run SIP with mcool file you need to install cooler: https://github.c
     sc:url "http://predictor.nchu.edu.tw/siPRED/" .
 
 <https://bio.tools/sipros> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0121,
@@ -440056,7 +466351,7 @@ If you want run SIP with mcool file you need to install cooler: https://github.c
     sc:url "http://siprosensemble.omicsbio.org/" .
 
 <https://bio.tools/sir-epidemic-spread-model> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3305,
@@ -440073,7 +466368,7 @@ If you want run SIP with mcool file you need to install cooler: https://github.c
     biotools:primaryContact "Giovanni Valentini" .
 
 <https://bio.tools/sir-model-covid19-india-real-time-tracking> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3299,
         edam:topic_3305,
@@ -440089,7 +466384,7 @@ If you want run SIP with mcool file you need to install cooler: https://github.c
     biotools:primaryContact "Siddharth Kumar" .
 
 <https://bio.tools/sir-model-virus-spread> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3305,
@@ -440107,7 +466402,7 @@ If you want run SIP with mcool file you need to install cooler: https://github.c
     biotools:primaryContact "Tom Beekhuysen" .
 
 <https://bio.tools/sirah> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_2258,
@@ -440122,7 +466417,7 @@ If you want run SIP with mcool file you need to install cooler: https://github.c
     sc:url "http://www.sirahff.com/" .
 
 <https://bio.tools/sircah> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0654,
@@ -440139,7 +466434,7 @@ If you want run SIP with mcool file you need to install cooler: https://github.c
     sc:url "http://www.bork.embl.de/Sircah/" .
 
 <https://bio.tools/sird-model-covid19> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3299,
         edam:topic_3305,
@@ -440159,7 +466454,7 @@ If you want run SIP with mcool file you need to install cooler: https://github.c
     biotools:primaryContact "Diego Caccavo" .
 
 <https://bio.tools/sire> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2885,
         edam:topic_3305,
@@ -440180,7 +466475,7 @@ SIRE allows for simultaneous estimation of single nucleotide polymorphism (SNP)
     sc:url "http://theITEAM.github.io/SIRE.html" .
 
 <https://bio.tools/sires> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0099,
@@ -440203,7 +466498,7 @@ SIRE allows for simultaneous estimation of single nucleotide polymorphism (SNP)
         "Mayka Sanchez (For questions regarding IREs)" .
 
 <https://bio.tools/sirfinder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3320,
         edam:topic_3512 ;
@@ -440216,18 +466511,18 @@ SIRE allows for simultaneous estimation of single nucleotide polymorphism (SNP)
 
 <https://bio.tools/sirius> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0944" ;
-            sc:name "Peptide mass fingerprint" ;
-            sc:sameAs "http://edamontology.org/data_0944" ] ;
+            sc:additionalType "http://edamontology.org/data_0944" ;
+            sc:encodingFormat "http://edamontology.org/format_3651" ;
+            sc:name "Peptide mass fingerprint" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0846" ;
-            sc:name "Chemical formula" ;
-            sc:sameAs "http://edamontology.org/data_0846" ],
+            sc:additionalType "http://edamontology.org/data_0846" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Chemical formula" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0944" ;
-            sc:name "Peptide mass fingerprint" ;
-            sc:sameAs "http://edamontology.org/data_0944" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0944" ;
+            sc:encodingFormat "http://edamontology.org/format_3603" ;
+            sc:name "Peptide mass fingerprint" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -440247,7 +466542,7 @@ SIRE allows for simultaneous estimation of single nucleotide polymorphism (SNP)
     sc:url "http://bio.informatik.uni-jena.de/sirius" .
 
 <https://bio.tools/sirmodelsimulation> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3305,
@@ -440265,18 +466560,15 @@ SIRE allows for simultaneous estimation of single nucleotide polymorphism (SNP)
 
 <https://bio.tools/sirna> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2887" ;
-            sc:name "Nucleic acid sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2887" ] ;
+            sc:additionalType "http://edamontology.org/data_2887" ;
+            sc:name "Nucleic acid sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1276" ;
-            sc:name "Nucleic acid features" ;
-            sc:sameAs "http://edamontology.org/data_1276" ],
+            sc:additionalType "http://edamontology.org/data_2887" ;
+            sc:name "Nucleic acid sequence record" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2887" ;
-            sc:name "Nucleic acid sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2887" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1276" ;
+            sc:name "Nucleic acid features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0160 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -440306,7 +466598,7 @@ SIRE allows for simultaneous estimation of single nucleotide polymorphism (SNP)
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/sirna.html" .
 
 <https://bio.tools/sirna_selection> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0130,
@@ -440325,7 +466617,7 @@ SIRE allows for simultaneous estimation of single nucleotide polymorphism (SNP)
     biotools:primaryContact "siRNA Selection Support" .
 
 <https://bio.tools/sirnadb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0099,
@@ -440347,8 +466639,21 @@ SIRE allows for simultaneous estimation of single nucleotide polymorphism (SNP)
     sc:url "http://sirna.cgb.ki.se/" ;
     biotools:primaryContact "Erik Sonnhammer" .
 
+<https://bio.tools/sirnapred> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:description "siRNApred: Support vector machine based methods for predicting actual efficacy of both 21mer and 19mer siRNAs with high accuracy." ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "sirnapred" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/sirnapred/> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/sirnapred/" .
+
 <https://bio.tools/sirw> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -440369,7 +466674,7 @@ SIRE allows for simultaneous estimation of single nucleotide polymorphism (SNP)
     biotools:primaryContact "Ramu C." .
 
 <https://bio.tools/sisa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3303,
         edam:topic_3379,
         edam:topic_3474 ;
@@ -440384,7 +466689,7 @@ Machine learning project to predict subject hospitalization.""" ;
     sc:url "https://github.com/rsippy/SISASISAL" .
 
 <https://bio.tools/siseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/16.2.180>,
@@ -440402,7 +466707,7 @@ Machine learning project to predict subject hospitalization.""" ;
     sc:url "http://nsato4.c.u-tokyo.ac.jp/old/Siseq.html" .
 
 <https://bio.tools/sismonr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0601,
         edam:topic_0602,
@@ -440424,7 +466729,7 @@ The sismonr package aims at simulating random in silico biological systems, cont
     sc:url "https://oliviaab.github.io/sismonr/" .
 
 <https://bio.tools/sispa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3517 ;
@@ -440441,8 +466746,28 @@ The sismonr package aims at simulating random in silico biological systems, cont
     sc:url "http://bioconductor.org/packages/release/bioc/html/SISPA.html" ;
     biotools:primaryContact "Bhakti Dwivedi" .
 
+<https://bio.tools/sispo> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_3315,
+        edam:topic_3318,
+        edam:topic_3382 ;
+    sc:citation <https://doi.org/10.1371/JOURNAL.PONE.0263882>,
+        "pmcid:PMC8896705",
+        "pubmed:35245306" ;
+    sc:description "Space Imaging Simulator for Proximity Operations." ;
+    sc:featureList edam:operation_0573,
+        edam:operation_1816,
+        edam:operation_3890 ;
+    sc:isAccessibleForFree true ;
+    sc:license "BSD-3-Clause" ;
+    sc:name "SISPO" ;
+    sc:operatingSystem "Linux",
+        "Windows" ;
+    sc:url "https://github.com/SISPO-developers" .
+
 <https://bio.tools/sisrs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3168,
@@ -440456,7 +466781,7 @@ The sismonr package aims at simulating random in silico biological systems, cont
     sc:url "https://github.com/rachelss/SISRS" .
 
 <https://bio.tools/sissrs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3125,
@@ -440477,7 +466802,7 @@ The sismonr package aims at simulating random in silico biological systems, cont
     biotools:primaryContact "Raja Jothi" .
 
 <https://bio.tools/sistema> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0202,
@@ -440502,7 +466827,7 @@ The sismonr package aims at simulating random in silico biological systems, cont
     sc:url "http://sistema.ens-lyon.fr" .
 
 <https://bio.tools/sistematx> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0202,
@@ -440522,14 +466847,13 @@ The sismonr package aims at simulating random in silico biological systems, cont
 
 <https://bio.tools/sisyphus> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2793" ;
-            sc:name "SISYPHUS ID" ;
-            sc:sameAs "http://edamontology.org/data_2793" ] ;
+            sc:additionalType "http://edamontology.org/data_2793" ;
+            sc:name "SISYPHUS ID" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1481" ;
-            sc:name "Structure alignment (protein)" ;
-            sc:sameAs "http://edamontology.org/data_1481" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1481" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Structure alignment (protein)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078 ;
     sc:citation <https://doi.org/10.1016/j.sbi.2006.04.003> ;
@@ -440543,7 +466867,7 @@ The sismonr package aims at simulating random in silico biological systems, cont
     sc:url "http://sisyphus.mrc-cpe.cam.ac.uk" .
 
 <https://bio.tools/sitar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3308,
@@ -440561,14 +466885,14 @@ The sismonr package aims at simulating random in silico biological systems, cont
 
 <https://bio.tools/sitebinder> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2878" ;
-            sc:name "Protein structural motif" ;
-            sc:sameAs "http://edamontology.org/data_2878" ] ;
+            sc:additionalType "http://edamontology.org/data_2878" ;
+            sc:encodingFormat "http://edamontology.org/format_1477" ;
+            sc:name "Protein structural motif" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1481" ;
-            sc:name "Structure alignment (protein)" ;
-            sc:sameAs "http://edamontology.org/data_1481" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1481" ;
+            sc:encodingFormat "http://edamontology.org/format_1477" ;
+            sc:name "Structure alignment (protein)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0081 ;
     sc:author "David Sehnal" ;
@@ -440592,7 +466916,7 @@ The sismonr package aims at simulating random in silico biological systems, cont
         "Primary Contact" .
 
 <https://bio.tools/sitecon> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0749,
@@ -440614,7 +466938,7 @@ The sismonr package aims at simulating random in silico biological systems, cont
     biotools:primaryContact "Oshchepkov Dmitry" .
 
 <https://bio.tools/siteengine> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_3510,
@@ -440631,7 +466955,7 @@ The sismonr package aims at simulating random in silico biological systems, cont
     sc:url "http://bioinfo3d.cs.tau.ac.il/SiteEngine/" .
 
 <https://bio.tools/sitehound-web> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0632,
         edam:topic_2814,
@@ -440654,7 +466978,7 @@ The sismonr package aims at simulating random in silico biological systems, cont
     biotools:primaryContact "SiteHound Support" .
 
 <https://bio.tools/sitesampler> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0160,
@@ -440670,7 +466994,7 @@ The sismonr package aims at simulating random in silico biological systems, cont
     sc:url "https://github.com/simon-ho/sitesampler/" .
 
 <https://bio.tools/siteseer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0203,
@@ -440693,7 +467017,7 @@ The sismonr package aims at simulating random in silico biological systems, cont
     biotools:primaryContact "Paul Boardman" .
 
 <https://bio.tools/sitex> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0736,
@@ -440714,7 +467038,7 @@ The sismonr package aims at simulating random in silico biological systems, cont
     biotools:primaryContact "Irina Medvedeva" .
 
 <https://bio.tools/sith> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_2640,
         edam:topic_3299 ;
@@ -440731,7 +467055,7 @@ Implements a three-dimensional stochastic model of cancer growth and mutation si
     sc:url "https://CRAN.R-project.org/package=SITH" .
 
 <https://bio.tools/sitk-ibex> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3168,
@@ -440751,14 +467075,36 @@ This Python package was implemented as part of the development of the Iterative
     sc:name "SITK-IBEX" ;
     sc:url "http://github.com/niaid/sitk-ibex" .
 
-<https://bio.tools/situs_slot_gacor_online> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
-    sc:description "Dapatkan bonus new member 100% dengan bermain slot online di Milan99. Dijamin gacor, kamu bakalan menang jackpot sampai miliaran rupiah loh. Daftar sekarang juga di link berikut." ;
-    sc:name "Situs Slot Gacor Online" ;
-    sc:url "https://natres.psu.ac.th/slot.php/" .
+<https://bio.tools/situs_poker_2022> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:description "Daftar situs poker online terbaik dan terpercaya 2022 hanya di <a href=\"https://2022poker.net/\">situs poker 2022</a> CMDPLAY" ;
+    sc:name "Situs Poker 2022" ;
+    sc:url "https://2022poker.net/" .
+
+<https://bio.tools/sitvitbovis> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_0625,
+        edam:topic_3305,
+        edam:topic_3500,
+        edam:topic_3673 ;
+    sc:citation <https://doi.org/10.1093/DATABASE/BAAB081>,
+        "pmcid:PMC8962452",
+        "pubmed:35028657" ;
+    sc:description "Publicly available database and mapping tool to get an improved overview of animal and human cases caused by Mycobacterium bovis." ;
+    sc:featureList edam:operation_0224,
+        edam:operation_3196,
+        edam:operation_3431 ;
+    sc:isAccessibleForFree true ;
+    sc:name "SITVITBovis" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://www.pasteur-guadeloupe.fr:8081/SITVIT_Bovis" .
 
 <https://bio.tools/sivirus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0154,
@@ -440776,7 +467122,7 @@ This Python package was implemented as part of the development of the Iterative
     biotools:primaryContact "siVirus Support" .
 
 <https://bio.tools/sivs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3360 ;
     sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAB501>,
@@ -440793,7 +467139,7 @@ This Python package was implemented as part of the development of the Iterative
     sc:url "https://cran.r-project.org/web/packages/sivs/index.html" .
 
 <https://bio.tools/sixpac> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3053 ;
@@ -440809,18 +467155,15 @@ This Python package was implemented as part of the development of the Iterative
 
 <https://bio.tools/sixpack> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2886" ;
-            sc:name "Protein sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2886" ],
+            sc:additionalType "http://edamontology.org/data_2886" ;
+            sc:name "Protein sequence record" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1276" ;
-            sc:name "Nucleic acid features" ;
-            sc:sameAs "http://edamontology.org/data_1276" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1276" ;
+            sc:name "Nucleic acid features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -440853,14 +467196,12 @@ This Python package was implemented as part of the development of the Iterative
 
 <https://bio.tools/sixpack-ebi> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ] ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:name "Nucleic acid sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:name "Protein sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
@@ -440882,8 +467223,29 @@ This Python package was implemented as part of the development of the Iterative
     sc:url "http://www.ebi.ac.uk/Tools/st/emboss_sixpack/" ;
     biotools:primaryContact "Web Production" .
 
+<https://bio.tools/sizeextractr> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0610,
+        edam:topic_0769,
+        edam:topic_3382 ;
+    sc:citation <https://doi.org/10.1002/ECE3.8724>,
+        "pmcid:PMC8928875",
+        "pubmed:35342569" ;
+    sc:description "The goal of SizeExtractR is to facilitate scientific projects that have research questions relating to size, from pure biology to ecology on individual to landscape scales, by providing a protocol with a user-friendly set of interactive tools for image analysis (ImageJ-macros) and database formation and quality checking (R-package)." ;
+    sc:featureList edam:operation_2428,
+        edam:operation_3443,
+        edam:operation_3553 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "SizeExtractR" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/liamlachs/SizeExtractR" .
+
 <https://bio.tools/sizepower> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3518 ;
@@ -440902,14 +467264,12 @@ This Python package was implemented as part of the development of the Iterative
 
 <https://bio.tools/sizeseq> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -440940,14 +467300,14 @@ This Python package was implemented as part of the development of the Iterative
 
 <https://bio.tools/sjcount> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1916" ;
-            sc:name "Alignment" ;
-            sc:sameAs "http://edamontology.org/data_1916" ] ;
+            sc:additionalType "http://edamontology.org/data_1916" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Alignment" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1276" ;
-            sc:name "Nucleic acid features" ;
-            sc:sameAs "http://edamontology.org/data_1276" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1276" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Nucleic acid features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0077 ;
     sc:author "Dmitri Pervouchine" ;
@@ -440966,7 +467326,7 @@ This Python package was implemented as part of the development of the Iterative
     biotools:primaryContact "Dmitri Pervouchine" .
 
 <https://bio.tools/skade> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0634,
         edam:topic_3297,
@@ -440986,7 +467346,7 @@ Protein solubility is a key aspect for many biotechnological, biomedical and ind
     sc:url "https://bitbucket.org/eddiewrc/skade/src" .
 
 <https://bio.tools/skat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_3517 ;
     sc:citation <https://doi.org/10.1016/j.ajhg.2013.04.015> ;
@@ -441001,7 +467361,7 @@ Protein solubility is a key aspect for many biotechnological, biomedical and ind
     sc:url "https://www.hsph.harvard.edu/skat/" .
 
 <https://bio.tools/skater> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0203,
@@ -441020,7 +467380,7 @@ Protein solubility is a key aspect for many biotechnological, biomedical and ind
     sc:url "https://signaturescience.github.io/skater" .
 
 <https://bio.tools/skeledock> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2275,
         edam:topic_3336 ;
@@ -441036,7 +467396,7 @@ An online platform for drug discovery applications.""" ;
     sc:url "https://playmolecule.org/SkeleDock/" .
 
 <https://bio.tools/skelesim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3056 ;
@@ -441055,7 +467415,7 @@ An online platform for drug discovery applications.""" ;
     biotools:primaryContact "Allan Strand" .
 
 <https://bio.tools/skeleton3d> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -441072,7 +467432,7 @@ An online platform for drug discovery applications.""" ;
     biotools:primaryContact "Philip Kollmannsberger" .
 
 <https://bio.tools/skempi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:author <http://orcid.org/0000-0001-7786-2109>,
         <https://orcid.org/0000-0002-4960-5487>,
@@ -441088,8 +467448,29 @@ An online platform for drug discovery applications.""" ;
     sc:softwareVersion "2.0" ;
     sc:url "https://life.bsc.es/pid/skempi2" .
 
+<https://bio.tools/sketching-based> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0196,
+        edam:topic_2885,
+        edam:topic_3174,
+        edam:topic_3697,
+        edam:topic_3837 ;
+    sc:citation <https://doi.org/10.1101/2021.11.04.467374> ;
+    sc:description "Sketching and sampling approaches for fast and accurate long read classification." ;
+    sc:featureList edam:operation_0224,
+        edam:operation_3198,
+        edam:operation_3472 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "sketching-based" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/arun96/sketching" .
+
 <https://bio.tools/skewdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0199,
@@ -441106,7 +467487,7 @@ An online platform for drug discovery applications.""" ;
     sc:url "https://skewdb.org" .
 
 <https://bio.tools/skewer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3168,
@@ -441124,7 +467505,7 @@ An online platform for drug discovery applications.""" ;
     biotools:primaryContact "Jiang Hongshan" .
 
 <https://bio.tools/skewit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
         edam:topic_0199,
@@ -441142,7 +467523,7 @@ SkewIT (Skew Index Test) is a tool for analyzing GC Skew in bacterial genomes. G
     sc:url "https://github.com/jenniferlu717/SkewIT" .
 
 <https://bio.tools/skewr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -441162,8 +467543,28 @@ SkewIT (Skew Index Test) is a tool for analyzing GC Skew in bacterial genomes. G
     sc:url "http://bioconductor.org/packages/release/bioc/html/skewr.html" ;
     biotools:primaryContact "Ryan Putney" .
 
+<https://bio.tools/skimpy> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0602,
+        edam:topic_3172,
+        edam:topic_3297,
+        edam:topic_3407 ;
+    sc:citation <https://doi.org/10.1101/2022.01.17.476618> ;
+    sc:description "Intuitive modeling of large-scale biological kinetic models." ;
+    sc:featureList edam:operation_2426,
+        edam:operation_3660 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Apache-2.0" ;
+    sc:name "SKiMpy" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/EPFL-LCSB/SKiMpy" .
+
 <https://bio.tools/skin-lesion-melanoma-classification> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3382,
@@ -441180,7 +467581,7 @@ SkewIT (Skew Index Test) is a tool for analyzing GC Skew in bacterial genomes. G
     biotools:primaryContact "Matlab Mebin" .
 
 <https://bio.tools/skin-lesions-symmetry-determiner> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3382 ;
@@ -441195,8 +467596,25 @@ SkewIT (Skew Index Test) is a tool for analyzing GC Skew in bacterial genomes. G
     sc:url "https://www.mathworks.com/matlabcentral/fileexchange/50903-novel-method-for-determining-symmetry-of-skin-lesions-using-the-jaccard-index" ;
     biotools:primaryContact "Tyler Coye" .
 
+<https://bio.tools/skin_hyperpigmentation> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3382,
+        edam:topic_3404 ;
+    sc:citation <https://doi.org/10.1159/000520753>,
+        "pubmed:34969031" ;
+    sc:description "Reliability Assessment and Validation of the Skin Hyperpigmentation Index Compared to the Physician Global Assessment Score." ;
+    sc:featureList edam:operation_2428,
+        edam:operation_3799 ;
+    sc:isAccessibleForFree true ;
+    sc:name "skin hyperpigmentation" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://shi.skinimageanalysis.com" .
+
 <https://bio.tools/skinbug> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0821,
         edam:topic_3404,
@@ -441216,7 +467634,7 @@ SkinBug can predict the metabolism and biotransformation of any molecule by the
     sc:url "http://metagenomics.iiserb.ac.in/skinbug" .
 
 <https://bio.tools/skink> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2814,
         edam:topic_3510,
@@ -441233,7 +467651,7 @@ SkinBug can predict the metabolism and biotransformation of any molecule by the
     sc:url "http://biows-inf.zdv.uni-mainz.de/skink/index.php" .
 
 <https://bio.tools/skinsensdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_2258,
@@ -441249,18 +467667,15 @@ SkinBug can predict the metabolism and biotransformation of any molecule by the
 
 <https://bio.tools/skipredundant> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0874" ;
-            sc:name "Comparison matrix" ;
-            sc:sameAs "http://edamontology.org/data_0874" ],
+            sc:additionalType "http://edamontology.org/data_0874" ;
+            sc:name "Comparison matrix" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -441293,14 +467708,12 @@ SkinBug can predict the metabolism and biotransformation of any molecule by the
 
 <https://bio.tools/skipseq> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -441330,8 +467743,32 @@ SkinBug can predict the metabolism and biotransformation of any molecule by the
     sc:softwareVersion "r6" ;
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/skipseq.html" .
 
+<https://bio.tools/skm> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2299" ;
+            sc:name "Gene name" ] ;
+    bsc:output [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2080" ;
+            sc:name "Database search results" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0602,
+        edam:topic_0780 ;
+    sc:author <https://orcid.org/0000-0003-1617-7145>,
+        "Vid Podpečan" ;
+    sc:contributor "Kristina Gruden",
+        "Živa Ramšak" ;
+    sc:description "Stress Knowledge Map:  A compilation of knowledge on mechanisms underlying responses of plants to stress, the so called stress signalling network." ;
+    sc:featureList edam:operation_2421 ;
+    sc:isAccessibleForFree true ;
+    sc:name "SKM" ;
+    sc:provider "National Institute of Biology, Department of Biotechnology and Systems Biology" ;
+    sc:softwareHelp <https://skm.nib.si/documentation> ;
+    sc:url "https://skm.nib.si/" .
+
 <https://bio.tools/sksv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0769,
@@ -441352,7 +467789,7 @@ SkinBug can predict the metabolism and biotransformation of any molecule by the
         "Yadong Wang" .
 
 <https://bio.tools/skylign> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -441374,12 +467811,14 @@ SkinBug can predict the metabolism and biotransformation of any molecule by the
     biotools:primaryContact "Skylign Support" .
 
 <https://bio.tools/skyline> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0769,
         edam:topic_3520 ;
-    sc:citation <https://doi.org/10.1093/bioinformatics/btq054> ;
+    sc:citation <https://doi.org/10.1038/S41596-022-00714-6>,
+        <https://doi.org/10.1093/bioinformatics/btq054>,
+        "pubmed:35831612" ;
     sc:description "Builds SRM/MRM methods and analyzes resulting data." ;
     sc:featureList edam:operation_2409,
         edam:operation_3636,
@@ -441392,8 +467831,27 @@ SkinBug can predict the metabolism and biotransformation of any molecule by the
     sc:softwareHelp <https://skyline.ms/wiki/home/software/Skyline/page.view?name=tutorials> ;
     sc:url "https://brendanx-uw1.gs.washington.edu/labkey/project/home/software/Skyline/begin.view" .
 
+<https://bio.tools/skyline_batch> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0121,
+        edam:topic_0769,
+        edam:topic_3520 ;
+    sc:citation <https://doi.org/10.1021/ACS.JPROTEOME.1C00749>,
+        "pmcid:PMC8749956",
+        "pubmed:34919405" ;
+    sc:description "Skyline Batch is an application that automates a common Skyline workflow for batch processing Skyline documents. It interacts with Skyline through the command-line, allowing it to import data into a template document, export reports, and run R scripts on those reports without bringing up the Skyline user interface." ;
+    sc:featureList edam:operation_3096 ;
+    sc:isAccessibleForFree true ;
+    sc:name "Skyline Batch" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://skyline.gs.washington.edu/software/SkylineBatch/SkylineBatchDocumentation.pdf> ;
+    sc:url "https://skyline.ms/batch.url" .
+
 <https://bio.tools/sl_reml> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3315,
         edam:topic_3337,
         edam:topic_3517 ;
@@ -441406,8 +467864,33 @@ SkinBug can predict the metabolism and biotransformation of any molecule by the
     sc:name "SL_REML" ;
     sc:url "https://github.com/rborder/SL_REML" .
 
+<https://bio.tools/slag> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Desktop application" ;
+    sc:applicationSubCategory edam:topic_0196,
+        edam:topic_0632,
+        edam:topic_0769,
+        edam:topic_3168,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.1111/1755-0998.13580>,
+        "pubmed:34995394" ;
+    sc:description "A program for seeded local assembly of genes in complex genomes" ;
+    sc:featureList edam:operation_0308,
+        edam:operation_0310,
+        edam:operation_2422 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "slag" ;
+    sc:operatingSystem "Linux",
+        "Mac" ;
+    sc:url "https://github.com/cfcrane/SLAG" .
+
 <https://bio.tools/slalom> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3168,
@@ -441427,8 +467910,33 @@ SkinBug can predict the metabolism and biotransformation of any molecule by the
     sc:url "http://bioconductor.org/packages/release/bioc/html/slalom.html" ;
     biotools:primaryContact "Davis McCarthy" .
 
+<https://bio.tools/slang> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0194,
+        edam:topic_0196,
+        edam:topic_0625,
+        edam:topic_2885,
+        edam:topic_3293 ;
+    sc:citation <https://doi.org/10.1002/APS3.11484>,
+        "pmcid:PMC9215276",
+        "pubmed:35774992" ;
+    sc:description "SLANG (Simple Long-read loci Assembly of Nanopore data for Genotyping) is a Python script pipeline for locus assembly, orthology estimation and SNP extraction of Nanopore-sequenced multi-locus data." ;
+    sc:featureList edam:operation_0310,
+        edam:operation_0323,
+        edam:operation_0484,
+        edam:operation_3196,
+        edam:operation_3933 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "SLANG" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/DorfnerM/SLANG" .
+
 <https://bio.tools/slapnap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3168,
         edam:topic_3324,
@@ -441446,8 +467954,30 @@ The slapnap container is a tool for using the Compile, Analyze and Tally NAb Pan
     sc:name "SLAPNAP" ;
     sc:url "https://benkeser.github.io/slapnap/" .
 
+<https://bio.tools/slaw> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0153,
+        edam:topic_0769,
+        edam:topic_3172,
+        edam:topic_3316,
+        edam:topic_3520 ;
+    sc:citation <https://doi.org/10.1021/ACS.ANALCHEM.1C02687>,
+        "pubmed:34735114" ;
+    sc:description "A Scalable and Self-Optimizing Processing Workflow for Untargeted LC-MS." ;
+    sc:featureList edam:operation_2422,
+        edam:operation_3431,
+        edam:operation_3695 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-2.0" ;
+    sc:name "SLAW" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/zamboni-lab/SLAW" .
+
 <https://bio.tools/slda> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2259,
@@ -441464,7 +467994,7 @@ The slapnap container is a tool for using the Compile, Analyze and Tally NAb Pan
     sc:url "http://research.fhcrc.org/wu/en/software.html#sLDA" .
 
 <https://bio.tools/sleap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_3304,
         edam:topic_3474,
@@ -441479,7 +468009,7 @@ The slapnap container is a tool for using the Compile, Analyze and Tally NAb Pan
     sc:url "http://sleap.ai" .
 
 <https://bio.tools/sledgehmmer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -441493,7 +468023,7 @@ The slapnap container is a tool for using the Compile, Analyze and Tally NAb Pan
     sc:url "http://bioapps.rit.albany.edu/sledgeHMMER/" .
 
 <https://bio.tools/sleep> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_2815,
         edam:topic_3300,
@@ -441512,7 +468042,7 @@ The slapnap container is a tool for using the Compile, Analyze and Tally NAb Pan
     biotools:primaryContact "Etienne Combrisson" .
 
 <https://bio.tools/sleepcycles> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3300,
         edam:topic_3304,
@@ -441533,7 +468063,7 @@ The slapnap container is a tool for using the Compile, Analyze and Tally NAb Pan
     sc:url "https://github.com/ChristineBlume/SleepCycles" .
 
 <https://bio.tools/sleepwalk> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_2229,
         edam:topic_3170,
@@ -441561,14 +468091,14 @@ When working with single-cell data, e.g., from single-cell RNA-Seq, we need an i
 
 <https://bio.tools/sleuth> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Gene expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ] ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_2571" ;
+            sc:name "Gene expression data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0928" ;
-            sc:name "Gene expression profile" ;
-            sc:sameAs "http://edamontology.org/data_0928" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0928" ;
+            sc:encodingFormat "http://edamontology.org/format_2058" ;
+            sc:name "Gene expression profile" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2269,
@@ -441589,7 +468119,7 @@ When working with single-cell data, e.g., from single-cell RNA-Seq, we need an i
     sc:url "https://pachterlab.github.io/sleuth/" .
 
 <https://bio.tools/slgi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0602,
@@ -441609,7 +468139,7 @@ When working with single-cell data, e.g., from single-cell RNA-Seq, we need an i
     biotools:primaryContact "Nolwenn Le Meur" .
 
 <https://bio.tools/slicembler> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0654,
@@ -441626,7 +468156,7 @@ When working with single-cell data, e.g., from single-cell RNA-Seq, we need an i
     biotools:primaryContact "Hamid Mirebrahim" .
 
 <https://bio.tools/slicerdmri> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3063,
         edam:topic_3384,
@@ -441643,7 +468173,7 @@ SlicerDMRI, an open-source software suite that enables research using diffusion
     sc:url "http://dmri.slicer.org/" .
 
 <https://bio.tools/slicermorph> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_3050,
         edam:topic_3384,
@@ -441662,22 +468192,21 @@ SlicerMorph enable biologists to retrieve, visualize, measure and annotate high-
 
 <https://bio.tools/slider> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2093" ;
-            sc:name "Data reference" ;
-            sc:sameAs "http://edamontology.org/data_2093" ],
+            sc:additionalType "http://edamontology.org/data_2959" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "Nucleic acid probability profile" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2959" ;
-            sc:name "Nucleic acid probability profile" ;
-            sc:sameAs "http://edamontology.org/data_2959" ] ;
+            sc:additionalType "http://edamontology.org/data_2093" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "Data reference" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1383" ;
-            sc:name "Sequence alignment (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1383" ],
+            sc:additionalType "http://edamontology.org/data_0867" ;
+            sc:name "Sequence alignment report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0867" ;
-            sc:name "Sequence alignment report" ;
-            sc:sameAs "http://edamontology.org/data_0867" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1383" ;
+            sc:encodingFormat "http://edamontology.org/format_1921" ;
+            sc:name "Sequence alignment (nucleic acid)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_2269,
@@ -441696,8 +468225,32 @@ SlicerMorph enable biologists to retrieve, visualize, measure and annotate high-
     sc:url "http://www.bcgsc.ca/platform/bioinfo/software/slider" ;
     biotools:primaryContact "Slider support" .
 
+<https://bio.tools/slides_viewer> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Image" ] ;
+    bsc:output [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Image" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0091,
+        edam:topic_3372,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1016/j.eswa.2020.113387> ;
+    sc:description "Tool to visualize WSI and navigate through their zones at different zoom levels." ;
+    sc:featureList edam:operation_3552,
+        edam:operation_3553 ;
+    sc:name "Slides Viewer" ;
+    sc:operatingSystem "Linux",
+        "Windows" ;
+    sc:softwareVersion "v1" ;
+    sc:url "http://telemed.uca.es:443/" .
+
 <https://bio.tools/slidesort> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0769 ;
@@ -441715,7 +468268,7 @@ SlicerMorph enable biologists to retrieve, visualize, measure and annotate high-
     biotools:primaryContact "Kana Shimizu" .
 
 <https://bio.tools/slidesort-bpr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654,
@@ -441730,7 +468283,7 @@ SlicerMorph enable biologists to retrieve, visualize, measure and annotate high-
     sc:url "https://github.com/ewijaya/slidesort-bpr" .
 
 <https://bio.tools/slidr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0114,
         edam:topic_0621,
@@ -441751,8 +468304,28 @@ SLIDR and SLOPPR identify spliced leaders (SLs) from 5'-tails of RNA-Seq reads t
     sc:name "SLIDR" ;
     sc:url "https://github.com/wenzelm/slidr-sloppr" .
 
+<https://bio.tools/sliman> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_3021" ;
+            sc:name "UniProt accession" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0160,
+        edam:topic_0602,
+        edam:topic_3318 ;
+    sc:citation <https://doi.org/10.1021/acs.jproteome.1c00964>,
+        "pubmed:35642445" ;
+    sc:description "An integrative web server for exploring short linear motif-mediated interactions in interactomes." ;
+    sc:featureList edam:operation_2949 ;
+    sc:isAccessibleForFree true ;
+    sc:name "SLiMAn" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://sliman.cbs.cnrs.fr" .
+
 <https://bio.tools/slimarray> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0219,
@@ -441768,7 +468341,7 @@ SLIDR and SLOPPR identify spliced leaders (SLs) from 5'-tails of RNA-Seq reads t
     sc:url "http://slimarray.systemsbiology.net/" .
 
 <https://bio.tools/slimdisc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0128,
@@ -441791,7 +468364,7 @@ SLIDR and SLOPPR identify spliced leaders (SLs) from 5'-tails of RNA-Seq reads t
     biotools:primaryContact "User Forum" .
 
 <https://bio.tools/slimfinder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0160,
@@ -441813,7 +468386,7 @@ SLIDR and SLOPPR identify spliced leaders (SLs) from 5'-tails of RNA-Seq reads t
     biotools:primaryContact "Richard Edwards" .
 
 <https://bio.tools/slimr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0610,
@@ -441835,7 +468408,7 @@ SLIDR and SLOPPR identify spliced leaders (SLs) from 5'-tails of RNA-Seq reads t
     sc:url "https://rdinnager.github.io/slimr/" .
 
 <https://bio.tools/slimscape> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0140 ;
@@ -441857,7 +468430,7 @@ SLIDR and SLOPPR identify spliced leaders (SLs) from 5'-tails of RNA-Seq reads t
     sc:url "http://apps.cytoscape.org/apps/slimscape" .
 
 <https://bio.tools/slimsearch> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -441877,7 +468450,7 @@ SLIDR and SLOPPR identify spliced leaders (SLs) from 5'-tails of RNA-Seq reads t
     sc:url "http://slim.ucd.ie/slimsearch/" .
 
 <https://bio.tools/slimsuite> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3307,
@@ -441905,7 +468478,7 @@ SLIDR and SLOPPR identify spliced leaders (SLs) from 5'-tails of RNA-Seq reads t
     biotools:primaryContact "Australia" .
 
 <https://bio.tools/slink> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0625,
@@ -441922,8 +468495,32 @@ SLIDR and SLOPPR identify spliced leaders (SLs) from 5'-tails of RNA-Seq reads t
     sc:softwareHelp <https://watson.hgen.pitt.edu/docs/SLink.html> ;
     sc:url "http://watson.hgen.pitt.edu/docs/SLink.html" .
 
+<https://bio.tools/slinker> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0196,
+        edam:topic_3170,
+        edam:topic_3308,
+        edam:topic_3320,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.12688/F1000RESEARCH.74836.1>,
+        "pmcid:PMC8749905",
+        "pubmed:35035899" ;
+    sc:description "Visualising novel splicing events in RNA-Seq data." ;
+    sc:featureList edam:operation_0310,
+        edam:operation_0337,
+        edam:operation_0446 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "Slinker" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://github.com/Oshlack/Slinker/wiki> ;
+    sc:url "https://github.com/Oshlack/Slinker" .
+
 <https://bio.tools/slinky> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0769 ;
@@ -441944,7 +468541,7 @@ SLIDR and SLOPPR identify spliced leaders (SLs) from 5'-tails of RNA-Seq reads t
     biotools:primaryContact "Eric J. Kort" .
 
 <https://bio.tools/sliq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0622,
@@ -441960,7 +468557,7 @@ SLIDR and SLOPPR identify spliced leaders (SLs) from 5'-tails of RNA-Seq reads t
     sc:url "http://bioinformatics.rutgers.edu/Software/SLiQ/" .
 
 <https://bio.tools/slither> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_3534,
@@ -441980,7 +468577,7 @@ SLIDR and SLOPPR identify spliced leaders (SLs) from 5'-tails of RNA-Seq reads t
     biotools:primaryContact "Jung-Hsin Lin" .
 
 <https://bio.tools/slivar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0625,
@@ -442004,7 +468601,7 @@ slivar is a set of command-line tools that enables rapid querying and filtering
     sc:url "https://github.com/brentp/slivar" .
 
 <https://bio.tools/slmgae> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2640,
@@ -442016,7 +468613,7 @@ slivar is a set of command-line tools that enables rapid querying and filtering
     sc:url "https://github.com/DiNg1011/SLMGAE" .
 
 <https://bio.tools/slmsuite> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0622,
@@ -442035,7 +468632,7 @@ slivar is a set of command-line tools that enables rapid querying and filtering
     biotools:primaryContact "Alberto Magi" .
 
 <https://bio.tools/slncky> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_3299,
@@ -442052,7 +468649,7 @@ slivar is a set of command-line tools that enables rapid querying and filtering
     biotools:primaryContact "Manuel Garber" .
 
 <https://bio.tools/slnpm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0659 ;
     sc:citation <https://doi.org/10.1186/S12864-019-6284-Y>,
         "pmcid:PMC6923828",
@@ -442064,8 +468661,33 @@ slivar is a set of command-line tools that enables rapid querying and filtering
     sc:name "SLNPM" ;
     sc:url "https://github.com/BioMedicalBigDataMiningLab/SLNPM" .
 
+<https://bio.tools/sload> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1026" ;
+            sc:name "Gene symbol" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0199,
+        edam:topic_0602,
+        edam:topic_2640,
+        edam:topic_3512,
+        edam:topic_3974 ;
+    sc:citation <https://doi.org/10.1093/DATABASE/BAAC075>,
+        "pmcid:PMC9419874",
+        "pubmed:36029479" ;
+    sc:description "A comprehensive database of cancer-specific synthetic lethal interactions for precision cancer therapy via multi-omics analysis." ;
+    sc:featureList edam:operation_2421,
+        edam:operation_3223,
+        edam:operation_4009 ;
+    sc:isAccessibleForFree true ;
+    sc:name "SLOAD" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://www.tmliang.cn/SLOAD" .
+
 <https://bio.tools/slope> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3175,
         edam:topic_3676 ;
@@ -442081,7 +468703,7 @@ slivar is a set of command-line tools that enables rapid querying and filtering
     biotools:primaryContact "Abel HJ" .
 
 <https://bio.tools/sloppr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0114,
         edam:topic_0621,
@@ -442102,14 +468724,8 @@ SLIDR and SLOPPR identify spliced leaders (SLs) from 5'-tails of RNA-Seq reads t
     sc:name "SLOPPR" ;
     sc:url "https://github.com/wenzelm/slidr-sloppr" .
 
-<https://bio.tools/slot367> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
-    sc:description "Slot367 Slot Online Tergacor di Indonesia" ;
-    sc:name "Slot367" ;
-    sc:url "https://slot367.com/" .
-
 <https://bio.tools/slp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0102 ;
@@ -442121,7 +468737,7 @@ SLIDR and SLOPPR identify spliced leaders (SLs) from 5'-tails of RNA-Seq reads t
     sc:url "http://vamps.mbl.edu/resources/software.php" .
 
 <https://bio.tools/slpfa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0780 ;
@@ -442137,8 +468753,34 @@ SLIDR and SLOPPR identify spliced leaders (SLs) from 5'-tails of RNA-Seq reads t
         "Windows" ;
     sc:url "http://sunflower.kuicr.kyoto-u.ac.jp/~tamura/slpfa.html" .
 
+<https://bio.tools/slpred> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0140,
+        edam:topic_0820,
+        edam:topic_2229,
+        edam:topic_2269 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC458>,
+        "pubmed:35801913" ;
+    sc:description "A Multi-view Subcellular Localization Prediction Tool for Multi-location Human Proteins." ;
+    sc:featureList edam:operation_0224,
+        edam:operation_2489,
+        edam:operation_3092 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "SLPred" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://slpred.kansil.org" .
+
 <https://bio.tools/slqpcr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3519 ;
@@ -442156,7 +468798,7 @@ SLIDR and SLOPPR identify spliced leaders (SLs) from 5'-tails of RNA-Seq reads t
     biotools:primaryContact "Matthias Kohl" .
 
 <https://bio.tools/slr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3518,
         edam:topic_3569 ;
@@ -442171,7 +468813,7 @@ SLIDR and SLOPPR identify spliced leaders (SLs) from 5'-tails of RNA-Seq reads t
     sc:url "http://fafner.meb.ki.se/personal/yudpaw/?page_id=13" .
 
 <https://bio.tools/slr-scaffold> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
         edam:topic_3125 ;
@@ -442187,7 +468829,7 @@ SLIDR and SLOPPR identify spliced leaders (SLs) from 5'-tails of RNA-Seq reads t
     sc:url "https://github.com/luojunwei/SLR" .
 
 <https://bio.tools/slush-biojs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0092 ;
@@ -442205,7 +468847,7 @@ SLIDR and SLOPPR identify spliced leaders (SLs) from 5'-tails of RNA-Seq reads t
     biotools:primaryContact "BioJS" .
 
 <https://bio.tools/sma> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_2815,
         edam:topic_3954 ;
@@ -442220,7 +468862,7 @@ SLIDR and SLOPPR identify spliced leaders (SLs) from 5'-tails of RNA-Seq reads t
     sc:url "https://sites.imagej.net/SMA/plugins/" .
 
 <https://bio.tools/smaca> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0625,
         edam:topic_0654,
@@ -442237,7 +468879,7 @@ SMAca is a python tool to detect putative SMA carriers and estimate the absolute
     sc:url "http://www.github.com/babelomics/SMAca" .
 
 <https://bio.tools/smafira> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0218,
         edam:topic_0621,
         edam:topic_2640,
@@ -442251,7 +468893,7 @@ SMAca is a python tool to detect putative SMA carriers and estimate the absolute
     sc:url "https://github.com/SMAFIRA/" .
 
 <https://bio.tools/smal> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0128,
@@ -442268,7 +468910,7 @@ SMAca is a python tool to detect putative SMA carriers and estimate the absolute
     sc:url "http://haddock6.sfsu.edu/smal/" .
 
 <https://bio.tools/smalf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_0659,
@@ -442283,13 +468925,8 @@ SMAca is a python tool to detect putative SMA carriers and estimate the absolute
     sc:url "https://github.com/dayunliu/SMALF" ;
     biotools:primaryContact "Lei Deng" .
 
-<https://bio.tools/small_rna_sequencing> a sc:SoftwareApplication ;
-    sc:description "To support the increasing research interest in small RNA, CD Genomics is offering the qualified small RNA sequencing service that covers novel small RNA discovery, mutation characterization, and expression profiling of small RNAs by leveraging of advanced NGS technologies and data analysis pipeline. CD Genomics provides full small RNA sequencing service packages including sample standardization, library preparation, deep sequencing, raw data quality control, genome assembly, and customized bioinformatics analysis. We can tailor this pipeline to your research interest. If you have additional requirements or questions, please feel free to contact us." ;
-    sc:name "Small RNA Sequencing" ;
-    sc:url "https://www.cd-genomics.com/Small-RNA.html" .
-
 <https://bio.tools/smallanimalmrghifu> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Plug-in" ;
     sc:applicationSubCategory edam:topic_2640,
@@ -442308,7 +468945,7 @@ SMAca is a python tool to detect putative SMA carriers and estimate the absolute
     biotools:primaryContact <http://orcid.org/0000-0001-5474-8776> .
 
 <https://bio.tools/smallgenometools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654 ;
     sc:citation <https://doi.org/10.3390/v7020781> ;
@@ -442322,7 +468959,7 @@ SMAca is a python tool to detect putative SMA carriers and estimate the absolute
     sc:url "http://hvdr.bioinf.wits.ac.za/SmallGenomeTools/" .
 
 <https://bio.tools/smalt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102 ;
     sc:citation <https://doi.org/10.1016/j.ygeno.2017.03.001>,
@@ -442340,7 +468977,7 @@ SMAca is a python tool to detect putative SMA carriers and estimate the absolute
     sc:url "http://www.sanger.ac.uk/science/tools/smalt-0" .
 
 <https://bio.tools/smap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3175,
@@ -442359,7 +468996,7 @@ SMAca is a python tool to detect putative SMA carriers and estimate the absolute
     biotools:primaryContact "Robin Andersson" .
 
 <https://bio.tools/smap_proteomics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0769,
@@ -442379,7 +469016,7 @@ SMAca is a python tool to detect putative SMA carriers and estimate the absolute
     sc:url "https://github.com/XWangLab/SMAP" .
 
 <https://bio.tools/smap_ws> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0128,
@@ -442395,26 +469032,41 @@ SMAca is a python tool to detect putative SMA carriers and estimate the absolute
 
 <https://bio.tools/smart> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1139" ;
-            sc:name "SMART accession number" ;
-            sc:sameAs "http://edamontology.org/data_1139" ],
+            sc:additionalType "http://edamontology.org/data_1139" ;
+            sc:name "SMART accession number" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2782" ;
-            sc:name "SMART domain name" ;
-            sc:sameAs "http://edamontology.org/data_2782" ] ;
+            sc:additionalType "http://edamontology.org/data_2782" ;
+            sc:name "SMART domain name" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1537" ;
-            sc:name "Protein structure report" ;
-            sc:sameAs "http://edamontology.org/data_1537" ],
+            sc:additionalType "http://edamontology.org/data_1537" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Protein structure report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1537" ;
-            sc:name "Protein structure report" ;
-            sc:sameAs "http://edamontology.org/data_1537" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1537" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Protein structure report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0623,
         edam:topic_0736 ;
-    sc:citation <https://doi.org/10.1093/nar/gku949> ;
+    sc:citation <https://doi.org/10.1073/pnas.95.11.5857>,
+        <https://doi.org/10.1093/nar/28.1.231>,
+        <https://doi.org/10.1093/nar/30.1.242>,
+        <https://doi.org/10.1093/nar/gkh088>,
+        <https://doi.org/10.1093/nar/gkj079>,
+        <https://doi.org/10.1093/nar/gkn808>,
+        <https://doi.org/10.1093/nar/gkr931>,
+        <https://doi.org/10.1093/nar/gku949>,
+        <https://doi.org/10.1093/nar/gkx922>,
+        "pmcid:PMC5753352",
+        "pubmed:10592234",
+        "pubmed:11752305",
+        "pubmed:14681379",
+        "pubmed:16381859",
+        "pubmed:18978020",
+        "pubmed:22053084",
+        "pubmed:29040681",
+        "pubmed:9600884" ;
     sc:description "SMART protein domain database." ;
     sc:featureList edam:operation_0224 ;
     sc:name "Simple modular architecture research tool (SMART)" ;
@@ -442425,7 +469077,7 @@ SMAca is a python tool to detect putative SMA carriers and estimate the absolute
     sc:url "http://smart.embl.de/" .
 
 <https://bio.tools/smart-hf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3335,
         edam:topic_3474,
         edam:topic_3577 ;
@@ -442442,30 +469094,52 @@ SMAca is a python tool to detect putative SMA carriers and estimate the absolute
         "Windows" ;
     sc:url "https://hfriskcalculator.herokuapp.com" .
 
-<https://bio.tools/smart_cutter> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0121,
-        edam:topic_0128,
-        edam:topic_0154,
-        edam:topic_0821,
-        edam:topic_3520 ;
-    sc:citation <https://doi.org/10.1021/ACS.ANALCHEM.9B04161>,
-        "pubmed:31814401" ;
-    sc:description """An Efficient Strategy for Increasing the Coverage of Chemical Cross-Linking Analysis.
-
-Chemical cross-linking combined with mass spectrometry (CXMS) has emerged as a powerful tool to study protein structure, conformation, and protein-protein interactions (PPIs). Until now, most cross-linked peptides were generated by using commercial cross-linkers, such as DSS, BS3, and DSSO, which react with the primary amino groups of the lysine residues of proteins. However, trypsin, the most commonly used proteolytic enzyme, cannot cleave the C-terminus of a linked lysine, making the obtained cross-linked peptides longer than common peptides and unfavorable for MS identification and data searching.
-
-||| HOMEPAGE MISSING!.
+<https://bio.tools/smart2p> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0769,
+        edam:topic_3077,
+        edam:topic_3382 ;
+    sc:citation <https://doi.org/10.1186/S40708-022-00166-4>,
+        "pmcid:PMC9352634",
+        "pubmed:35927517" ;
+    sc:description "A software for generating and processing smart line recording trajectories for population two-photon calcium imaging." ;
+    sc:featureList edam:operation_2939,
+        edam:operation_3443,
+        edam:operation_3891 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "SmaRT2P" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://github.com/flatironinstitute/NoRMCorre/wiki> ;
+    sc:url "https://github.com/moni90/SmART2P" .
 
-||| CORRECT NAME OF TOOL COULD ALSO BE 'bacteriome'""" ;
-    sc:featureList edam:operation_0366,
-        edam:operation_3631,
-        edam:operation_3642,
-        edam:operation_3767 ;
-    sc:name "smart cutter" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31814401" .
+<https://bio.tools/smart_r> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0081,
+        edam:topic_0769,
+        edam:topic_3382,
+        edam:topic_3500 ;
+    sc:citation <https://doi.org/10.1523/ENEURO.0482-21.2022>,
+        "pmcid:PMC9070730",
+        "pubmed:35396258" ;
+    sc:description "An Open-Source Extension of WholeBrain for Intact Mouse Brain Registration and Segmentation." ;
+    sc:featureList edam:operation_1812,
+        edam:operation_3443,
+        edam:operation_3552 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "SMART" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://smartrpackage.shinyapps.io/smart_sample_dataset" .
 
 <https://bio.tools/smartar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2269,
@@ -442480,7 +469154,7 @@ Chemical cross-linking combined with mass spectrometry (CXMS) has emerged as a p
     sc:url "https://cran.r-project.org/web/packages/SMARTAR/index.html" .
 
 <https://bio.tools/smartcell> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2229,
@@ -442495,7 +469169,7 @@ Chemical cross-linking combined with mass spectrometry (CXMS) has emerged as a p
     sc:url "http://software.crg.es/smartcell/" .
 
 <https://bio.tools/smartgraph> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0202,
         edam:topic_0602,
@@ -442513,7 +469187,7 @@ Chemical cross-linking combined with mass spectrometry (CXMS) has emerged as a p
     sc:url "https://smartgraph.ncats.io/" .
 
 <https://bio.tools/smartiv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0099 ;
@@ -442530,7 +469204,7 @@ Chemical cross-linking combined with mass spectrometry (CXMS) has emerged as a p
     biotools:primaryContact "Maya Polishchuk" .
 
 <https://bio.tools/smartpeak> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0153,
         edam:topic_0769,
         edam:topic_3172,
@@ -442549,7 +469223,7 @@ SmartPeak is an application that encapsulates advanced algorithms to enable fast
     sc:url "https://github.com/AutoFlowResearch/SmartPeak" .
 
 <https://bio.tools/smartphase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0625,
         edam:topic_3170,
@@ -442570,7 +469244,7 @@ SmartPhase is a phasing tool tailored for clinical use in genetic diagnosis pipe
     sc:url "http://ibis.helmholtz-muenchen.de/smartphase/" .
 
 <https://bio.tools/smarts> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0634,
@@ -442586,7 +469260,7 @@ SmartPhase is a phasing tool tailored for clinical use in genetic diagnosis pipe
     sc:url "http://sb.cs.cmu.edu/smarts/" .
 
 <https://bio.tools/smarts-server> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0218,
         edam:topic_3305,
         edam:topic_3474 ;
@@ -442598,7 +469272,7 @@ SmartPhase is a phasing tool tailored for clinical use in genetic diagnosis pipe
     sc:url "http://haddock9.sfsu.edu/" .
 
 <https://bio.tools/smartscan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0637,
@@ -442616,7 +469290,7 @@ SmartPhase is a phasing tool tailored for clinical use in genetic diagnosis pipe
     biotools:primaryContact "Qunyuan Zhang" .
 
 <https://bio.tools/smartsplus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0203,
         edam:topic_0209,
@@ -442639,7 +469313,7 @@ Compare two SMARTS expression with respect to subset relation (Does expression A
     sc:url "https://smarts.plus/" .
 
 <https://bio.tools/smash> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3053,
@@ -442653,7 +469327,7 @@ Compare two SMARTS expression with respect to subset relation (Does expression A
     sc:url "http://smash.cs.berkeley.edu/" .
 
 <https://bio.tools/smash-swap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0622,
         edam:topic_2885,
@@ -442676,18 +469350,17 @@ Sample swaps are a real concern in high throughput sequencing studies. SMaSH hel
 
 <https://bio.tools/smashcommunity> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3736" ;
-            sc:name "Ecological data" ;
-            sc:sameAs "http://edamontology.org/data_3736" ],
+            sc:additionalType "http://edamontology.org/data_3736" ;
+            sc:name "Ecological data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0848" ;
-            sc:name "Raw sequence" ;
-            sc:sameAs "http://edamontology.org/data_0848" ] ;
+            sc:additionalType "http://edamontology.org/data_0848" ;
+            sc:encodingFormat "http://edamontology.org/format_2571" ;
+            sc:name "Raw sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0950" ;
-            sc:name "Mathematical model" ;
-            sc:sameAs "http://edamontology.org/data_0950" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0950" ;
+            sc:encodingFormat "http://edamontology.org/format_2032" ;
+            sc:name "Mathematical model" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0085,
         edam:topic_0196,
@@ -442706,13 +469379,36 @@ Sample swaps are a real concern in high throughput sequencing studies. SMaSH hel
     biotools:primaryContact "Contact Form" .
 
 <https://bio.tools/smashpp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "Find and visualize rearrangements in DNA sequences" ;
     sc:name "Smash++" ;
     sc:url "https://github.com/smortezah/smashpp" .
 
+<https://bio.tools/smashpy> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0625,
+        edam:topic_2229,
+        edam:topic_3170,
+        edam:topic_3308,
+        edam:topic_3360 ;
+    sc:citation <https://doi.org/10.1186/S12859-022-04860-2>,
+        "pmcid:PMC9361618",
+        "pubmed:35941549" ;
+    sc:description "A scalable, general marker gene identification framework for single-cell RNA-sequencing." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_3891,
+        edam:operation_3936 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "SMaSH" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://gitlab.com/cvejic-group/smash" .
+
 <https://bio.tools/smatool> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0099,
         edam:topic_0128,
@@ -442730,8 +469426,32 @@ pipeline for integrated analysis of eCLIP and DMS/PARS.""" ;
     sc:name "SMAtool" ;
     sc:url "https://github.com/QuKunLab/SMAtool" .
 
+<https://bio.tools/smcpp> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_3989" ;
+            sc:name "Sequence" ] ;
+    bsc:output [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2526" ;
+            sc:encodingFormat "http://edamontology.org/format_3464" ;
+            sc:name "Text data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_3796 ;
+    sc:citation <https://doi.org/10.1038/ng.3748>,
+        "pmcid:PMC5470542",
+        "pubmed:28024154" ;
+    sc:description "SMC++ is a program for estimating the size history of populations from whole genome sequence data." ;
+    sc:featureList edam:operation_2423 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "SMC++" ;
+    sc:operatingSystem "Linux",
+        "Mac" ;
+    sc:url "https://github.com/popgenmethods/smcpp" .
+
 <https://bio.tools/smdic> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_2229,
@@ -442754,7 +469474,7 @@ pipeline for integrated analysis of eCLIP and DMS/PARS.""" ;
     sc:url "https://CRAN.R-project.org/package=SMDIC" .
 
 <https://bio.tools/smdynamicsanalyzer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_0820,
         edam:topic_3382 ;
@@ -442768,8 +469488,31 @@ The smDynamicsAnalyzer is an open-source macro that can determine a series of dy
     sc:name "smDynamicsAnalyzer" ;
     sc:url "https://github.com/masataka-yanagawa/IgorPro8-smDynamicsAnalyzer" .
 
+<https://bio.tools/smetabf> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0634,
+        edam:topic_2269,
+        edam:topic_2885,
+        edam:topic_3305,
+        edam:topic_3517 ;
+    sc:citation <https://doi.org/10.1371/JOURNAL.PCBI.1009948>,
+        "pmcid:PMC8947622",
+        "pubmed:35286307" ;
+    sc:description "A rapid algorithm for Bayesian GWAS meta-analysis with a large number of studies included." ;
+    sc:featureList edam:operation_0487,
+        edam:operation_3196,
+        edam:operation_3435 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "SMetABF" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://sunjianle-sjtu.shinyapps.io/analycode/" .
+
 <https://bio.tools/smethillium> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3277,
@@ -442785,7 +469528,7 @@ The smDynamicsAnalyzer is an open-source macro that can determine a series of dy
     sc:url "http://bioinfo-out.curie.fr/projects/smethillium/" .
 
 <https://bio.tools/smfBox> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_3047,
         edam:topic_3382 ;
@@ -442800,7 +469543,7 @@ Single molecule Förster Resonance Energy Transfer (smFRET) can be used to obtai
     sc:url "https://craggslab.github.io/smfBox/" .
 
 <https://bio.tools/smfinder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0153,
         edam:topic_0154,
         edam:topic_3047,
@@ -442818,7 +469561,7 @@ SMfinder is a free software for the analysis of small molecule. It allows identi
     sc:url "http://www.ifom.eu/SMfinder" .
 
 <https://bio.tools/smgea> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3474 ;
     sc:citation <https://doi.org/10.1109/TNNLS.2020.3039295>,
@@ -442830,7 +469573,7 @@ Deep neural networks are vulnerable to adversarial attacks. More importantly, so
     sc:url "https://github.com/CZHQuality/AAA-Pix2pix" .
 
 <https://bio.tools/smgen> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3314,
@@ -442848,7 +469591,7 @@ Deep neural networks are vulnerable to adversarial attacks. More importantly, so
     sc:url "https://gitlab.com/sgr34/smgen" .
 
 <https://bio.tools/smi-blast> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0160,
         edam:topic_0623,
@@ -442873,14 +469616,14 @@ Results: To uncover the reasons, we figured out three types of Incorrectly Selec
 
 <https://bio.tools/smi_services> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3442" ;
-            sc:name "MRI image" ;
-            sc:sameAs "http://edamontology.org/data_3442" ] ;
+            sc:additionalType "http://edamontology.org/data_3442" ;
+            sc:encodingFormat "http://edamontology.org/format_3548" ;
+            sc:name "MRI image" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3442" ;
-            sc:name "MRI image" ;
-            sc:sameAs "http://edamontology.org/data_3442" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3442" ;
+            sc:encodingFormat "http://edamontology.org/format_3548" ;
+            sc:name "MRI image" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_3382 ;
@@ -442895,7 +469638,7 @@ Results: To uncover the reasons, we figured out three types of Incorrectly Selec
     sc:url "https://github.com/SMI/SmiServices" .
 
 <https://bio.tools/smile> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Workbench" ;
     sc:applicationSubCategory edam:topic_0154,
@@ -442916,7 +469659,7 @@ Results: To uncover the reasons, we figured out three types of Incorrectly Selec
     sc:url "https://github.com/MIB-Lab/SMILE" .
 
 <https://bio.tools/smilespe> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2258,
         edam:topic_2275,
         edam:topic_3314,
@@ -442931,7 +469674,7 @@ SMILES Pair Encoding (ChemRxiv) first learns a vocabulary of high frequency SMIL
     sc:url "https://github.com/XinhaoLi74/SmilesPE" .
 
 <https://bio.tools/smirnadb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3308 ;
@@ -442946,7 +469689,7 @@ SMILES Pair Encoding (ChemRxiv) first learns a vocabulary of high frequency SMIL
     sc:url "http://www.mirz.unibas.ch/cloningprofiles/" .
 
 <https://bio.tools/smite> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2259,
@@ -442970,7 +469713,7 @@ SMILES Pair Encoding (ChemRxiv) first learns a vocabulary of high frequency SMIL
         "Neil Ari Wijetunga" .
 
 <https://bio.tools/smiter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -442993,7 +469736,7 @@ SMILES Pair Encoding (ChemRxiv) first learns a vocabulary of high frequency SMIL
     biotools:primaryContact <https://orcid.org/0000-0002-0523-6325> .
 
 <https://bio.tools/smmarts-sdk> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0632,
         edam:topic_3067,
         edam:topic_3954 ;
@@ -443007,7 +469750,7 @@ The CSSALT Software Development Kit (SDK) connects Unity Technology’s Unity 3D
     sc:url "https://github.com/UF-CSSALT/SMMARTS-SDK" .
 
 <https://bio.tools/smmip-tools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0632,
@@ -443031,7 +469774,7 @@ The CSSALT Software Development Kit (SDK) connects Unity Technology’s Unity 3D
     sc:url "https://github.com/abelson-lab/smMIP-tools" .
 
 <https://bio.tools/smmppi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0154,
@@ -443051,7 +469794,7 @@ The CSSALT Software Development Kit (SDK) connects Unity Technology’s Unity 3D
     biotools:primaryContact <https://orcid.org/0000-0002-3374-0588> .
 
 <https://bio.tools/smmrna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0128,
@@ -443071,7 +469814,7 @@ The CSSALT Software Development Kit (SDK) connects Unity Technology’s Unity 3D
     biotools:primaryContact "Raman Parkesh" .
 
 <https://bio.tools/smocuda> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3071,
         edam:topic_3334,
         edam:topic_3382 ;
@@ -443088,7 +469831,7 @@ SmoCuDa is a free open access database of 250 smoking-related images. All images
     sc:url "https://smocuda.github.io" .
 
 <https://bio.tools/smog> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0130,
@@ -443110,7 +469853,7 @@ SmoCuDa is a free open access database of 250 smoking-related images. All images
     biotools:primaryContact "SMOG Support" .
 
 <https://bio.tools/smoldyn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0749,
@@ -443126,7 +469869,7 @@ SmoCuDa is a free open access database of 250 smoking-related images. All images
     sc:url "http://www.smoldyn.org/" .
 
 <https://bio.tools/smooth> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_2269,
@@ -443142,7 +469885,7 @@ SmoCuDa is a free open access database of 250 smoking-related images. All images
     sc:url "http://www.wageningenur.nl/en/show/SMOOTH.htm" .
 
 <https://bio.tools/smopt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_2814 ;
@@ -443160,7 +469903,7 @@ SmoCuDa is a free open access database of 250 smoking-related images. All images
         "Minxin Chen" .
 
 <https://bio.tools/smorfer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0621,
@@ -443183,7 +469926,7 @@ SmoCuDa is a free open access database of 250 smoking-related images. All images
     sc:url "https://github.com/AlexanderBartholomaeus/smORFer" .
 
 <https://bio.tools/smorfunction> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0632,
         edam:topic_0659,
@@ -443202,7 +469945,7 @@ A Tool for Small Open Reading Frame (smORF) / Microprotein Function Prediction."
     sc:url "http://www.cuilab.cn/smorfunction" .
 
 <https://bio.tools/smpdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0602,
@@ -443224,8 +469967,28 @@ A Tool for Small Open Reading Frame (smORF) / Microprotein Function Prediction."
     sc:url "http://www.smpdb.ca" ;
     biotools:primaryContact "Contact Form" .
 
+<https://bio.tools/smplot> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0092,
+        edam:topic_3053,
+        edam:topic_3372 ;
+    sc:citation <https://doi.org/10.3389/FGENE.2021.802894>,
+        "pmcid:PMC8714909",
+        "pubmed:34976028" ;
+    sc:description "An R Package for Easy and Elegant Data Visualization." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3435 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "smplot" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/smin95/smplot" .
+
 <https://bio.tools/smrt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_2885,
@@ -443241,8 +470004,29 @@ A Tool for Small Open Reading Frame (smORF) / Microprotein Function Prediction."
     sc:url "https://github.com/guofeieileen/SMRT/wiki/Software" ;
     biotools:primaryContact "Lusheng Wang" .
 
+<https://bio.tools/smrt_R> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_2640,
+        edam:topic_3168,
+        edam:topic_3337,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.3389/FONC.2021.725133>,
+        "pmcid:PMC8563705",
+        "pubmed:34745946" ;
+    sc:description "Randomized Data Transformation for Cancer Subtyping and Big Data Analysis." ;
+    sc:featureList edam:operation_2939,
+        edam:operation_3431,
+        edam:operation_3891 ;
+    sc:isAccessibleForFree true ;
+    sc:name "SMRT" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://SMRT.tinnguyen-lab.com" .
+
 <https://bio.tools/smrt_analysis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application",
         "Suite" ;
@@ -443260,7 +470044,7 @@ A Tool for Small Open Reading Frame (smORF) / Microprotein Function Prediction."
     sc:url "http://www.pacb.com/products-and-services/analytical-software/smrt-analysis/" .
 
 <https://bio.tools/smrt_view> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0092,
@@ -443276,7 +470060,7 @@ A Tool for Small Open Reading Frame (smORF) / Microprotein Function Prediction."
     sc:url "https://github.com/PacificBiosciences/DevNet/wiki/SMRT-View" .
 
 <https://bio.tools/sms> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
@@ -443293,7 +470077,7 @@ A Tool for Small Open Reading Frame (smORF) / Microprotein Function Prediction."
     sc:url "http://www.bioinformatics.org/sms2/" .
 
 <https://bio.tools/smudge> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0625,
@@ -443319,10 +470103,10 @@ smudge_E.py - script to generate the corpus and features vectors of genes and di
 
 <https://bio.tools/smultcan> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Expression data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0659,
@@ -443343,7 +470127,7 @@ smudge_E.py - script to generate the corpus and features vectors of genes and di
     sc:url "http://konulabapps.bilkent.edu.tr:3838/SmulTCan/" .
 
 <https://bio.tools/smurfs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_3474,
@@ -443360,8 +470144,29 @@ smudge_E.py - script to generate the corpus and features vectors of genes and di
     biotools:primaryContact "Joshua Mayer",
         "Souparno Ghosh" .
 
+<https://bio.tools/snackntm> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Desktop application" ;
+    sc:applicationSubCategory edam:topic_0659,
+        edam:topic_3168,
+        edam:topic_3338 ;
+    sc:citation <https://doi.org/10.3343/ALM.2022.42.2.213>,
+        "pmcid:PMC8548243",
+        "pubmed:34635615" ;
+    sc:description "An Open-Source Software for Sanger Sequencing-based Identification of Nontuberculous Mycobacterial Species." ;
+    sc:featureList edam:operation_3185,
+        edam:operation_3192,
+        edam:operation_3695 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Apache-2.0" ;
+    sc:name "SnackNTM" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/Young-gonKim/SnackNTM" .
+
 <https://bio.tools/snackvar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0199,
         edam:topic_3168 ;
@@ -443376,7 +470181,7 @@ When a higher value of gap opening penalty is required, SnackVar automatically a
     sc:url "https://github.com/Young-gonKim/SnackVar" .
 
 <https://bio.tools/snagee> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -443397,7 +470202,7 @@ When a higher value of gap opening penalty is required, SnackVar automatically a
     biotools:primaryContact "David Venet" .
 
 <https://bio.tools/snakePipes> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3169,
         edam:topic_3170,
@@ -443417,7 +470222,7 @@ When a higher value of gap opening penalty is required, SnackVar automatically a
         "Thomas Manke" .
 
 <https://bio.tools/snakemake> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0769,
@@ -443433,7 +470238,7 @@ When a higher value of gap opening penalty is required, SnackVar automatically a
     sc:url "https://snakemake.readthedocs.io/en/stable/index.html" .
 
 <https://bio.tools/snakes-active-contour> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -443450,7 +470255,7 @@ When a higher value of gap opening penalty is required, SnackVar automatically a
     biotools:primaryContact "Ritwik Kumar" .
 
 <https://bio.tools/snakestrike> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3304,
         edam:topic_3315,
         edam:topic_3382,
@@ -443469,7 +470274,7 @@ The build environment needed to create a docker image for the tracking code loca
     sc:url "https://gwjensen.github.io/SnakeStrike/" .
 
 <https://bio.tools/snap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_2885,
@@ -443483,7 +470288,7 @@ The build environment needed to create a docker image for the tracking code loca
     sc:url "http://korflab.ucdavis.edu/software.html" .
 
 <https://bio.tools/snap-align> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0082,
@@ -443498,7 +470303,7 @@ The build environment needed to create a docker image for the tracking code loca
     sc:url "http://www.cs.rpi.edu/~zaki/www-new/pmwiki.php/Software/Software#toc31" .
 
 <https://bio.tools/snap-function> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btn435> ;
@@ -443511,14 +470316,14 @@ The build environment needed to create a docker image for the tracking code loca
 
 <https://bio.tools/snap2> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2886" ;
-            sc:name "Protein sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2886" ] ;
+            sc:additionalType "http://edamontology.org/data_2886" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1772" ;
-            sc:name "Score" ;
-            sc:sameAs "http://edamontology.org/data_1772" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1772" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Score" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_2885 ;
@@ -443536,7 +470341,7 @@ The build environment needed to create a docker image for the tracking code loca
     biotools:primaryContact "Rostlab" .
 
 <https://bio.tools/snapMRF> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3386,
         edam:topic_3444 ;
     sc:citation <https://doi.org/10.1016/J.MRI.2019.11.015>,
@@ -443549,7 +470354,7 @@ The build environment needed to create a docker image for the tracking code loca
     sc:url "https://github.com/chixindebaoyu/snapMRF" .
 
 <https://bio.tools/snapatac> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0102,
@@ -443569,7 +470374,7 @@ The build environment needed to create a docker image for the tracking code loca
     sc:url "https://github.com/r3fang/SnapATAC" .
 
 <https://bio.tools/snapcgh> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0797,
@@ -443591,7 +470396,7 @@ The build environment needed to create a docker image for the tracking code loca
     biotools:primaryContact "John Marioni" .
 
 <https://bio.tools/snaphic> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0769,
@@ -443614,7 +470419,7 @@ The build environment needed to create a docker image for the tracking code loca
     sc:url "https://github.com/HuMingLab/SnapHiC" .
 
 <https://bio.tools/snapkin> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0160,
@@ -443629,7 +470434,7 @@ The build environment needed to create a docker image for the tracking code loca
     sc:url "https://github.com/PYangLab/SnapKin" .
 
 <https://bio.tools/snappnet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0194,
         edam:topic_0780,
@@ -443653,7 +470458,7 @@ The build environment needed to create a docker image for the tracking code loca
     sc:url "https://github.com/rabier/MySnappNet" .
 
 <https://bio.tools/snapr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0099,
@@ -443669,7 +470474,7 @@ The build environment needed to create a docker image for the tracking code loca
     sc:url "https://price.systemsbiology.org/research/snapr/" .
 
 <https://bio.tools/snapshots> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0176,
         edam:topic_0593,
         edam:topic_0769,
@@ -443689,7 +470494,7 @@ Determination of thermophysical properties (densities, diffusion coefficients, e
     sc:url "https://fairdomhub.org/studies/639/snapshots/1" .
 
 <https://bio.tools/snare-cnn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0623,
@@ -443708,7 +470513,7 @@ Determination of thermophysical properties (densities, diffusion coefficients, e
     biotools:primaryContact "Nguyen Quoc Khanh Le" .
 
 <https://bio.tools/snat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3064,
@@ -443731,7 +470536,7 @@ Determination of thermophysical properties (densities, diffusion coefficients, e
     sc:url "https://www.snat.ethz.ch" .
 
 <https://bio.tools/snavi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0602,
@@ -443747,7 +470552,7 @@ Determination of thermophysical properties (densities, diffusion coefficients, e
     sc:url "https://code.google.com/p/snavi/" .
 
 <https://bio.tools/sneakysnake> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0749,
         edam:topic_3179 ;
@@ -443764,7 +470569,7 @@ The first and the only pre-alignment filtering algorithm that works efficiently
     sc:url "https://github.com/CMU-SAFARI/SneakySnake" .
 
 <https://bio.tools/snexpression> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0108,
         edam:topic_0203 ;
@@ -443782,7 +470587,7 @@ SNexpression is a software tool for structural analysis of Symmetric Nets (SN).
     sc:url "http://www.di.unito.it/~depierro/SNexpression" .
 
 <https://bio.tools/snf-nn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0208,
@@ -443800,7 +470605,7 @@ SNexpression is a software tool for structural analysis of Symmetric Nets (SN).
     sc:url "https://pages.cpsc.ucalgary.ca/~tnjarada/snf-nn.php" .
 
 <https://bio.tools/snfold> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0166,
         edam:topic_0736,
@@ -443817,14 +470622,14 @@ full-chain protein structure prediction server.""" ;
 
 <https://bio.tools/sniffles> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1383" ;
-            sc:name "Sequence alignment (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1383" ] ;
+            sc:additionalType "http://edamontology.org/data_1383" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Sequence alignment (nucleic acid)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence variations" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3168,
         edam:topic_3175 ;
@@ -443842,8 +470647,28 @@ full-chain protein structure prediction server.""" ;
     sc:url "https://github.com/fritzsedlazeck/Sniffles" ;
     biotools:primaryContact "Fritz J Sedlazeck" .
 
+<https://bio.tools/snikt> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0749,
+        edam:topic_3174,
+        edam:topic_3673,
+        edam:topic_3837 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC389>,
+        "pubmed:35695743" ;
+    sc:description "Sequence-independent adapter identification and removal in long-read shotgun sequencing data." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3192,
+        edam:operation_3237 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "SNIKT" ;
+    sc:operatingSystem "Linux",
+        "Mac" ;
+    sc:url "https://github.com/piyuranjan/SNIKT" .
+
 <https://bio.tools/snip-seq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2885,
         edam:topic_3056,
@@ -443857,7 +470682,7 @@ full-chain protein structure prediction server.""" ;
     biotools:primaryContact "Vikas Bansal" .
 
 <https://bio.tools/snipa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0199,
@@ -443876,7 +470701,7 @@ full-chain protein structure prediction server.""" ;
     sc:url "http://snipa.helmholtz-muenchen.de/snipa/" .
 
 <https://bio.tools/sniper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_2885 ;
     sc:citation "pubmed:21689413" ;
@@ -443891,7 +470716,7 @@ full-chain protein structure prediction server.""" ;
     biotools:primaryContact "Junhyong Kim" .
 
 <https://bio.tools/snippy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0622,
@@ -443915,7 +470740,7 @@ full-chain protein structure prediction server.""" ;
         "Torsten Seemann" .
 
 <https://bio.tools/snipviz> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_2885,
         edam:topic_3053 ;
@@ -443934,7 +470759,7 @@ full-chain protein structure prediction server.""" ;
     biotools:primaryContact "Michael Riffle" .
 
 <https://bio.tools/snm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -443956,7 +470781,7 @@ full-chain protein structure prediction server.""" ;
     biotools:primaryContact "John D. Storey" .
 
 <https://bio.tools/snmf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3056 ;
     sc:citation <https://doi.org/10.1534/genetics.113.160572>,
@@ -443972,7 +470797,7 @@ full-chain protein structure prediction server.""" ;
     sc:url "http://membres-timc.imag.fr/Olivier.Francois/snmf/index.htm" .
 
 <https://bio.tools/snn-cliq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2269,
@@ -443987,7 +470812,7 @@ full-chain protein structure prediction server.""" ;
     sc:url "http://bioinfo.uncc.edu/SNNCliq/" .
 
 <https://bio.tools/snoDB> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0659,
         edam:topic_2229,
@@ -444008,8 +470833,29 @@ snoTHAW is a tool to help visualize snoRNA expression data from snoDB""" ;
     sc:name "snoDB" ;
     sc:url "http://scottgroup.med.usherbrooke.ca/snoDB/" .
 
+<https://bio.tools/snoglobe> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0659,
+        edam:topic_0749,
+        edam:topic_3170,
+        edam:topic_3320,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAC475>,
+        "pmcid:PMC9226514",
+        "pubmed:35657102" ;
+    sc:description "The snoGloBe interaction predictor reveals a broad spectrum of C/D snoRNA RNA targets." ;
+    sc:featureList edam:operation_0433,
+        edam:operation_0443,
+        edam:operation_3902 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "snoGloBe" ;
+    sc:operatingSystem "Linux" ;
+    sc:url "https://github.com/scottgroup/snoGloBe" .
+
 <https://bio.tools/snogps> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0203,
@@ -444030,8 +470876,28 @@ snoTHAW is a tool to help visualize snoRNA expression data from snoDB""" ;
     sc:url "http://lowelab.ucsc.edu/snoGPS/" ;
     biotools:primaryContact "snoGPS Support" .
 
+<https://bio.tools/snomed_ct_software> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0637,
+        edam:topic_3303,
+        edam:topic_3452 ;
+    sc:citation <https://doi.org/10.3233/SHTI220549>,
+        "pubmed:35612169" ;
+    sc:description "Implementing SNOMED CT in Open Software Solutions to Enhance the Findability of COVID-19 Questionnaires." ;
+    sc:featureList edam:operation_3435,
+        edam:operation_3695,
+        edam:operation_3802 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "SNOMED CT" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/BIH-CEI/SNOMEDCT_OPAL" .
+
 <https://bio.tools/snoopcgh> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0797,
@@ -444047,7 +470913,7 @@ snoTHAW is a tool to help visualize snoRNA expression data from snoDB""" ;
     sc:url "http://snoopcgh.sourceforge.net/" .
 
 <https://bio.tools/snooper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_3168 ;
@@ -444067,7 +470933,7 @@ snoTHAW is a tool to help visualize snoRNA expression data from snoDB""" ;
     biotools:primaryContact "Jean-Francois Spinella" .
 
 <https://bio.tools/snoopy_hybrid_simulator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2275,
@@ -444086,7 +470952,7 @@ snoTHAW is a tool to help visualize snoRNA expression data from snoDB""" ;
     biotools:primaryContact "Mostafa Herajy" .
 
 <https://bio.tools/snopy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0659,
@@ -444105,7 +470971,7 @@ snoTHAW is a tool to help visualize snoRNA expression data from snoDB""" ;
     biotools:primaryContact "Support" .
 
 <https://bio.tools/snoscan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0659,
@@ -444124,14 +470990,14 @@ snoTHAW is a tool to help visualize snoRNA expression data from snoDB""" ;
 
 <https://bio.tools/snostrip> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1234" ;
-            sc:name "Sequence set (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1234" ] ;
+            sc:additionalType "http://edamontology.org/data_1234" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence set (nucleic acid)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2354" ;
-            sc:name "RNA family report" ;
-            sc:sameAs "http://edamontology.org/data_2354" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2354" ;
+            sc:encodingFormat "http://edamontology.org/format_1920" ;
+            sc:name "RNA family report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btt604> ;
@@ -444145,7 +471011,7 @@ snoTHAW is a tool to help visualize snoRNA expression data from snoDB""" ;
     sc:url "http://snostrip.bioinf.uni-leipzig.de/index.py" .
 
 <https://bio.tools/snovault> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0219,
         edam:topic_0622 ;
@@ -444160,7 +471026,7 @@ snoTHAW is a tool to help visualize snoRNA expression data from snoDB""" ;
     biotools:primaryContact "J. Michael Cherry" .
 
 <https://bio.tools/snow> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0128,
@@ -444183,7 +471049,7 @@ snoTHAW is a tool to help visualize snoRNA expression data from snoDB""" ;
     biotools:primaryContact "BABELOMICS Support" .
 
 <https://bio.tools/snowball-ica> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3304,
         edam:topic_3444,
         edam:topic_3524 ;
@@ -444200,7 +471066,7 @@ Snowball ICA: A Model order free Independent Component Analysis Scenario for Fun
     sc:url "https://github.com/GHu-DUT/Snowball-ICA" .
 
 <https://bio.tools/snowyowl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3053,
@@ -444214,7 +471080,7 @@ Snowball ICA: A Model order free Independent Component Analysis Scenario for Fun
     sc:url "https://sourceforge.net/projects/snowyowl/" .
 
 <https://bio.tools/snp-crispr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_2885,
         edam:topic_3168,
@@ -444250,14 +471116,14 @@ Enter an accession number (e.g""" ;
 
 <https://bio.tools/snp-genie> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3494" ;
-            sc:name "DNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3494" ] ;
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "DNA sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence variations" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_2533,
@@ -444274,7 +471140,7 @@ Enter an accession number (e.g""" ;
     sc:url "https://github.com/dmnfarrell/snpgenie" .
 
 <https://bio.tools/snp-markers-contingency-tables> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2885,
         edam:topic_3314,
@@ -444293,14 +471159,14 @@ Enter an accession number (e.g""" ;
     biotools:primaryContact "Mohammed Sadeq Al-Rawi" .
 
 <https://bio.tools/snp-mutator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "Generate mutated sequence files from a reference genome." ;
     sc:featureList edam:operation_0364 ;
     sc:name "snp-mutator" ;
     sc:url "https://github.com/CFSAN-Biostatistics/snp-mutator" .
 
 <https://bio.tools/snp-o-matic> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0102 ;
@@ -444315,7 +471181,7 @@ Enter an accession number (e.g""" ;
     biotools:primaryContact "SNP-o-matic Support" .
 
 <https://bio.tools/snp2hla> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2830,
         edam:topic_3053 ;
@@ -444329,7 +471195,7 @@ Enter an accession number (e.g""" ;
     sc:url "http://www.broadinstitute.org/mpg/snp2hla/" .
 
 <https://bio.tools/snp2tfbs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0622 ;
     sc:citation <https://doi.org/10.1093/nar/gkw1064> ;
@@ -444344,7 +471210,7 @@ Enter an accession number (e.g""" ;
     sc:url "http://ccg.vital-it.ch/snp2tfbs/" .
 
 <https://bio.tools/snp_cutter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0625,
@@ -444365,7 +471231,7 @@ Enter an accession number (e.g""" ;
     sc:url "http://bioinfo.bsd.uchicago.edu/SNP_cutter.htm" .
 
 <https://bio.tools/snp_hitlink> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0199,
@@ -444380,13 +471246,8 @@ Enter an accession number (e.g""" ;
     sc:softwareVersion "1.5.1" ;
     sc:url "http://www.dynacom.co.jp/u-tokyo.ac.jp/snphitlink/" .
 
-<https://bio.tools/snp_microarray> a sc:SoftwareApplication ;
-    sc:description "CD genomics can help you analyze genetic variation efficiently to meet diverse research needs. By utilizing Affymetrix and Illumina array platforms, we support high-throughput, multiplex processing to meet diverse research needs., delivering high-quality data at a low per-sample cost.  Our Full Service covers the complete process, from quality control of genomic DNA to thedetermination of genotypes. Besides, CD Genomics can also help create your own custom microarray which can be tailored to meet specific project requirements. If you have additional requirements or questions, please feel free to contact us." ;
-    sc:name "SNP Microarray" ;
-    sc:url "https://www.cd-genomics.com/SNP-Microarray.html" .
-
 <https://bio.tools/snp_ratio_test> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2885,
         edam:topic_3053,
@@ -444402,7 +471263,7 @@ Enter an accession number (e.g""" ;
     sc:url "http://sourceforge.net/projects/snpratiotest/" .
 
 <https://bio.tools/snpaamapper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0199,
@@ -444418,7 +471279,7 @@ Enter an accession number (e.g""" ;
     sc:url "http://isu.indstate.edu/ybai2/SNPAAMapper2/index.html" .
 
 <https://bio.tools/snpack> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0622 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btu495> ;
@@ -444435,7 +471296,7 @@ Enter an accession number (e.g""" ;
     biotools:primaryContact "Francesco Sambo" .
 
 <https://bio.tools/snpadomain> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0199,
@@ -444457,7 +471318,7 @@ Enter an accession number (e.g""" ;
     biotools:primaryContact "Sungsam Gong" .
 
 <https://bio.tools/snpalyze> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0634,
@@ -444472,7 +471333,7 @@ Enter an accession number (e.g""" ;
     sc:url "http://www.dynacom.co.jp/english/snpalyze_e/" .
 
 <https://bio.tools/snpassoc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_2885,
@@ -444489,7 +471350,7 @@ Enter an accession number (e.g""" ;
     sc:url "http://bioinfo.iconcologia.net/es/SNPassoc" .
 
 <https://bio.tools/snpator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0199,
@@ -444522,7 +471383,7 @@ Enter an accession number (e.g""" ;
     sc:url "http://www.snpator.org/" .
 
 <https://bio.tools/snpbox> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0632,
         edam:topic_2885,
@@ -444541,7 +471402,7 @@ Enter an accession number (e.g""" ;
     sc:url "http://www.SNPbox.org" .
 
 <https://bio.tools/snpcaller> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2885,
         edam:topic_3053 ;
@@ -444554,7 +471415,7 @@ Enter an accession number (e.g""" ;
     sc:url "http://watson.hgen.pitt.edu/register/soft_doc.html" .
 
 <https://bio.tools/snpchip> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0199,
@@ -444574,7 +471435,7 @@ Enter an accession number (e.g""" ;
     biotools:primaryContact "Robert Scharpf" .
 
 <https://bio.tools/snpdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0199 ;
     sc:citation <https://doi.org/10.1093/nar/29.1.308>,
@@ -444591,7 +471452,7 @@ Enter an accession number (e.g""" ;
     sc:url "https://www.ncbi.nlm.nih.gov/snp" .
 
 <https://bio.tools/snpdelscore> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_2815,
@@ -444609,7 +471470,7 @@ Enter an accession number (e.g""" ;
     biotools:primaryContact "Ivan Ovcharenko" .
 
 <https://bio.tools/snpduo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_2885,
@@ -444625,7 +471486,7 @@ Enter an accession number (e.g""" ;
     sc:url "http://pevsnerlab.kennedykrieger.org/SNPduo/" .
 
 <https://bio.tools/snpedia> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0625,
@@ -444647,7 +471508,7 @@ Enter an accession number (e.g""" ;
     biotools:primaryContact "Greg Lennon" .
 
 <https://bio.tools/snpediar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2885 ;
@@ -444666,34 +471527,34 @@ Enter an accession number (e.g""" ;
 
 <https://bio.tools/snpeff> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2306" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ],
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence variations" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_3003" ;
+            sc:name "Annotation track" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_2885,
@@ -444711,7 +471572,7 @@ Enter an accession number (e.g""" ;
     sc:url "http://snpeff.sourceforge.net/" .
 
 <https://bio.tools/snpeffect> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -444734,7 +471595,7 @@ Enter an accession number (e.g""" ;
     biotools:primaryContact "Contact Form" .
 
 <https://bio.tools/snpfile> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_2885,
@@ -444751,8 +471612,33 @@ Enter an accession number (e.g""" ;
     sc:url "http://daimi.au.dk/~mailund/SNPfile/index.html" ;
     biotools:primaryContact "Thomas Mailund" .
 
+<https://bio.tools/snpfiltr> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_0610,
+        edam:topic_0625,
+        edam:topic_2885,
+        edam:topic_3518 ;
+    sc:citation <https://doi.org/10.1111/1755-0998.13618>,
+        "pubmed:35398990" ;
+    sc:description "An R package for interactive and reproducible SNP filtering." ;
+    sc:featureList edam:operation_0484,
+        edam:operation_2939,
+        edam:operation_3196,
+        edam:operation_3695,
+        edam:operation_3891 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "SNPfiltR" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://cran.r-project.org/web/packages/SNPfiltR/SNPfiltR.pdf> ;
+    sc:url "http://devonderaad.github.io/SNPfiltR/" .
+
 <https://bio.tools/snpflow> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2885,
@@ -444767,7 +471653,7 @@ Enter an accession number (e.g""" ;
     sc:url "http://genepi-snpflow.i-med.ac.at/" .
 
 <https://bio.tools/snpgenesets> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0622,
@@ -444786,7 +471672,7 @@ Enter an accession number (e.g""" ;
     biotools:primaryContact "Hao Mei" .
 
 <https://bio.tools/snpgenie> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_2885,
@@ -444804,18 +471690,18 @@ Enter an accession number (e.g""" ;
 
 <https://bio.tools/snphood> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_3003" ;
+            sc:name "Sequence alignment" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ],
+            sc:additionalType "http://edamontology.org/data_1669" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "P-value" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1669" ;
-            sc:name "P-value" ;
-            sc:sameAs "http://edamontology.org/data_1669" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -444835,7 +471721,7 @@ Enter an accession number (e.g""" ;
     biotools:primaryContact "Christian Arnold" .
 
 <https://bio.tools/snphunter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_2885,
@@ -444849,7 +471735,7 @@ Enter an accession number (e.g""" ;
     sc:url "http://www.softsea.com/review/SNPHunter.html" .
 
 <https://bio.tools/snpidentifier> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2885,
         edam:topic_3053 ;
@@ -444864,7 +471750,7 @@ Enter an accession number (e.g""" ;
     sc:url "http://www.animalgenome.org/tools/share/SNPidentifier/" .
 
 <https://bio.tools/snpinfo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0204,
@@ -444886,7 +471772,7 @@ Enter an accession number (e.g""" ;
     biotools:primaryContact "Z. Xu" .
 
 <https://bio.tools/snpint-gpu> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0219,
@@ -444903,7 +471789,7 @@ Enter an accession number (e.g""" ;
     biotools:primaryContact "Lars Wienbrandt" .
 
 <https://bio.tools/snpitty> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_3053 ;
@@ -444926,13 +471812,13 @@ Enter an accession number (e.g""" ;
     sc:url "https://ccbc.erasmusmc.nl/" .
 
 <https://bio.tools/snpkit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "A Modular/Scalable workflow for Microbial Variant Calling, Recombination detection and Phylogenetic tree reconstruction." ;
     sc:name "snpkit" ;
     sc:url "https://alipirani88.github.io/snpkit/" .
 
 <https://bio.tools/snplice> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_3320 ;
@@ -444950,7 +471836,7 @@ Enter an accession number (e.g""" ;
     sc:url "https://code.google.com/archive/p/snplice/" .
 
 <https://bio.tools/snpls> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -444968,18 +471854,15 @@ Enter an accession number (e.g""" ;
 
 <https://bio.tools/snpmasker> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ],
+            sc:additionalType "http://edamontology.org/data_2012" ;
+            sc:name "Sequence coordinates" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2012" ;
-            sc:name "Sequence coordinates" ;
-            sc:sameAs "http://edamontology.org/data_2012" ] ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:name "Nucleic acid sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:name "Nucleic acid sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0157,
@@ -444998,7 +471881,7 @@ Enter an accession number (e.g""" ;
     biotools:primaryContact "Reidar Andreson" .
 
 <https://bio.tools/snpmol> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0176,
         edam:topic_0199,
         edam:topic_2814,
@@ -445017,7 +471900,7 @@ Enter an accession number (e.g""" ;
     sc:url "http://www.snpmol.org/" .
 
 <https://bio.tools/snpnet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2885,
@@ -445043,7 +471926,7 @@ Enter an accession number (e.g""" ;
     biotools:primaryContact <https://orcid.org/0000-0002-0164-3142> .
 
 <https://bio.tools/snpnexus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0625,
@@ -445065,7 +471948,7 @@ Enter an accession number (e.g""" ;
     biotools:primaryContact "Contact Form" .
 
 <https://bio.tools/snpnexus-covid> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3053,
         edam:topic_3168,
@@ -445081,7 +471964,7 @@ The severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) pandemic has de
     sc:url "https://www.snp-nexus.org/v4/covid/" .
 
 <https://bio.tools/snppar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0749,
         edam:topic_2885,
@@ -445105,7 +471988,7 @@ These are self-contained datasets, including reference(s), tree and snp_table(s)
     sc:url "https://github.com/d-j-e/SNPPar" .
 
 <https://bio.tools/snpqc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0625,
@@ -445121,7 +472004,7 @@ These are self-contained datasets, including reference(s), tree and snp_table(s)
     sc:url "http://www-personal.une.edu.au/~cgondro2/snpQC.htm" .
 
 <https://bio.tools/snpqt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_2885,
@@ -445142,7 +472025,7 @@ These are self-contained datasets, including reference(s), tree and snp_table(s)
     sc:url "https://github.com/nebfield/snpQT" .
 
 <https://bio.tools/snpr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0769,
@@ -445161,7 +472044,7 @@ The analysis of genomic data can be an intimidating process, particularly for re
     sc:url "https://rdrr.io/github/hemstrow/snpR/" .
 
 <https://bio.tools/snprank> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2885,
@@ -445178,7 +472061,7 @@ The analysis of genomic data can be an intimidating process, particularly for re
     sc:url "http://insilico.utulsa.edu/snprank.php" .
 
 <https://bio.tools/snprecode> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625 ;
     sc:citation <https://doi.org/10.21203/RS.3.RS-95704/V1> ;
@@ -445195,7 +472078,7 @@ The analysis of genomic data can be an intimidating process, particularly for re
     sc:url "https://github.com/AMarete/fimpute-utils" .
 
 <https://bio.tools/snprelate> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2885,
@@ -445218,7 +472101,7 @@ The analysis of genomic data can be an intimidating process, particularly for re
     biotools:primaryContact <http://orcid.org/0000-0002-1390-0708> .
 
 <https://bio.tools/snps-and-go> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_2885,
         edam:topic_3518 ;
@@ -445232,14 +472115,14 @@ The analysis of genomic data can be an intimidating process, particularly for re
 
 <https://bio.tools/snps_and_go> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3021" ;
-            sc:name "UniProt accession" ;
-            sc:sameAs "http://edamontology.org/data_3021" ] ;
+            sc:additionalType "http://edamontology.org/data_3021" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "UniProt accession" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0896" ;
-            sc:name "Protein report" ;
-            sc:sameAs "http://edamontology.org/data_0896" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0896" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Protein report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_3325,
@@ -445262,7 +472145,7 @@ The analysis of genomic data can be an intimidating process, particularly for re
         "Rita Casadio" .
 
 <https://bio.tools/snps_go> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0199,
@@ -445279,7 +472162,7 @@ The analysis of genomic data can be an intimidating process, particularly for re
     sc:url "http://snps-and-go.biocomp.unibo.it/snps-and-go/" .
 
 <https://bio.tools/snpscan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_2885,
@@ -445295,7 +472178,7 @@ The analysis of genomic data can be an intimidating process, particularly for re
     sc:url "http://pevsnerlab.kennedykrieger.org/php/?q=node/101" .
 
 <https://bio.tools/snpsea> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0085 ;
     sc:citation "pubmed:24813542" ;
@@ -445310,7 +472193,7 @@ The analysis of genomic data can be an intimidating process, particularly for re
     biotools:primaryContact "SNPsea Support" .
 
 <https://bio.tools/snpsetter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_2885,
         edam:topic_3053 ;
@@ -445324,7 +472207,7 @@ The analysis of genomic data can be an intimidating process, particularly for re
     sc:url "http://dna.leeds.ac.uk/snpsetter/" .
 
 <https://bio.tools/snpsift> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3071,
         edam:topic_3365 ;
@@ -445338,7 +472221,7 @@ The analysis of genomic data can be an intimidating process, particularly for re
     sc:url "http://snpeff.sourceforge.net/SnpSift.html" .
 
 <https://bio.tools/snpsim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2885,
         edam:topic_3053,
@@ -445353,7 +472236,7 @@ The analysis of genomic data can be an intimidating process, particularly for re
     sc:url "https://code.google.com/p/phylosoftware/" .
 
 <https://bio.tools/snpsnap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0219,
         edam:topic_0622,
@@ -445371,7 +472254,7 @@ The analysis of genomic data can be an intimidating process, particularly for re
     sc:url "http://www.broadinstitute.org/mpg/snpsnap/" .
 
 <https://bio.tools/snpspd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_2885,
@@ -445387,7 +472270,7 @@ The analysis of genomic data can be an intimidating process, particularly for re
     sc:url "http://neurogenetics.qimrberghofer.edu.au/SNPSpD/" .
 
 <https://bio.tools/snpsplicer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0625,
@@ -445402,7 +472285,7 @@ The analysis of genomic data can be an intimidating process, particularly for re
     sc:url "http://www.ikmb.uni-kiel.de/resources/download-tools/software/snpsplicer" .
 
 <https://bio.tools/snpstats> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2885,
@@ -445421,7 +472304,7 @@ The analysis of genomic data can be an intimidating process, particularly for re
     biotools:primaryContact "David Clayton" .
 
 <https://bio.tools/snpsti> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_2885,
@@ -445436,7 +472319,7 @@ The analysis of genomic data can be an intimidating process, particularly for re
     sc:url "https://github.com/ubccr/SNPSTI" .
 
 <https://bio.tools/snpsyn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0634,
@@ -445458,7 +472341,7 @@ The analysis of genomic data can be an intimidating process, particularly for re
     biotools:primaryContact "Tomaz Curk" .
 
 <https://bio.tools/snptest> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3517 ;
     sc:citation <https://doi.org/10.1038/nature05911>,
@@ -445475,7 +472358,7 @@ The analysis of genomic data can be an intimidating process, particularly for re
     sc:url "https://mathgen.stats.ox.ac.uk/genetics_software/snptest/snptest.html" .
 
 <https://bio.tools/snptools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_2885,
         edam:topic_3053,
@@ -445490,7 +472373,7 @@ The analysis of genomic data can be an intimidating process, particularly for re
     sc:url "https://www.hgsc.bcm.edu/software/snptools" .
 
 <https://bio.tools/snptracker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
@@ -445509,14 +472392,14 @@ The analysis of genomic data can be an intimidating process, particularly for re
 
 <https://bio.tools/snptree> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_2546" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0872" ;
-            sc:name "Phylogenetic tree" ;
-            sc:sameAs "http://edamontology.org/data_0872" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0872" ;
+            sc:encodingFormat "http://edamontology.org/format_2006" ;
+            sc:name "Phylogenetic tree" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2885,
         edam:topic_3293 ;
@@ -445535,7 +472418,7 @@ The analysis of genomic data can be an intimidating process, particularly for re
     sc:url "http://cge.cbs.dtu.dk/services/snpTree/" .
 
 <https://bio.tools/snptrio> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2885,
@@ -445549,7 +472432,7 @@ The analysis of genomic data can be an intimidating process, particularly for re
     sc:url "http://pevsnerlab.kennedykrieger.org/SNPtrio.htm" .
 
 <https://bio.tools/snpversity> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0199,
@@ -445570,7 +472453,7 @@ The analysis of genomic data can be an intimidating process, particularly for re
         "Taner Z Sen" .
 
 <https://bio.tools/snpxplorer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0203,
         edam:topic_0625,
@@ -445589,7 +472472,7 @@ snpXplorer is an online open source web-server to explore associations from Geno
     sc:url "http://snpxplorer.eu.ngrok.io" .
 
 <https://bio.tools/snpxplorer-gwas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0203,
@@ -445612,7 +472495,7 @@ snpXplorer is an online open source web-server to explore associations from Geno
     biotools:primaryContact <https://orcid.org/0000-0002-1413-5091> .
 
 <https://bio.tools/snr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3170,
@@ -445633,7 +472516,7 @@ snpXplorer is an online open source web-server to explore associations from Geno
     sc:url "https://github.com/snr-vis/" .
 
 <https://bio.tools/sns-align> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0097,
@@ -445649,7 +472532,7 @@ snpXplorer is an online open source web-server to explore associations from Geno
     sc:url "http://www.ccmb.res.in/rakeshmishra/snsalign-tool.html" .
 
 <https://bio.tools/snsa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2259,
         edam:topic_3293,
@@ -445665,7 +472548,7 @@ snpXplorer is an online open source web-server to explore associations from Geno
     sc:url "http://bs.ipm.ir/softwares/snsa/" .
 
 <https://bio.tools/snt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3067,
         edam:topic_3304,
         edam:topic_3382,
@@ -445690,7 +472573,7 @@ SNT is ImageJ's framework for semi-automated tracing, visualization, quantitativ
     sc:url "https://imagej.net/SNT" .
 
 <https://bio.tools/snv-ppilp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_2640,
@@ -445706,7 +472589,7 @@ SNT is ImageJ's framework for semi-automated tracing, visualization, quantitativ
     sc:url "http://www.cs.helsinki.fi/en/gsa/snv-ppilp" .
 
 <https://bio.tools/snver> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_2885 ;
     sc:citation "pubmed:21813454" ;
@@ -445721,7 +472604,7 @@ SNT is ImageJ's framework for semi-automated tracing, visualization, quantitativ
     biotools:primaryContact "Wei Wang" .
 
 <https://bio.tools/snvmix> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_2640,
@@ -445741,7 +472624,7 @@ SNT is ImageJ's framework for semi-automated tracing, visualization, quantitativ
     biotools:primaryContact "Contact" .
 
 <https://bio.tools/soap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btn025>,
@@ -445759,7 +472642,7 @@ SNT is ImageJ's framework for semi-automated tracing, visualization, quantitativ
     biotools:primaryContact "SOAP Support" .
 
 <https://bio.tools/soap2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btp336>,
@@ -445777,7 +472660,7 @@ SNT is ImageJ's framework for semi-automated tracing, visualization, quantitativ
     sc:url "http://soap.genomics.org.cn/soapaligner.html" .
 
 <https://bio.tools/soap3-gpu> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3673 ;
@@ -445793,7 +472676,7 @@ SNT is ImageJ's framework for semi-automated tracing, visualization, quantitativ
         "Tak-Wah Lam" .
 
 <https://bio.tools/soapdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0621 ;
@@ -445804,7 +472687,7 @@ SNT is ImageJ's framework for semi-automated tracing, visualization, quantitativ
     sc:url "http://soapdb.sourceforge.net/" .
 
 <https://bio.tools/soapdenovo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0196 ;
     sc:citation "pubmed:20019144" ;
@@ -445819,7 +472702,7 @@ SNT is ImageJ's framework for semi-automated tracing, visualization, quantitativ
     biotools:primaryContact "SOAP Support" .
 
 <https://bio.tools/soapdenovo2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3168,
@@ -445841,7 +472724,7 @@ SNT is ImageJ's framework for semi-automated tracing, visualization, quantitativ
         "Tak-Wah Lam" .
 
 <https://bio.tools/soapfusion> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0114,
         edam:topic_3170,
@@ -445858,7 +472741,7 @@ http://soap.genomics.org.cn/SOAPfusion.html""" ;
     biotools:primaryContact "SOAP Support" .
 
 <https://bio.tools/soapindel> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199 ;
     sc:citation <https://doi.org/10.1101/gr.132480.111>,
@@ -445873,7 +472756,7 @@ http://soap.genomics.org.cn/SOAPfusion.html""" ;
     sc:url "http://soap.genomics.org.cn/index.html" .
 
 <https://bio.tools/soapmetas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0637,
         edam:topic_3168,
@@ -445897,7 +472780,7 @@ SOAPMetaS has been tested in the environments of local, Spark standalone cluster
     sc:url "https://github.com/BGI-flexlab/SOAPMetaS" .
 
 <https://bio.tools/soapnuke> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3168,
@@ -445916,7 +472799,7 @@ SOAPMetaS has been tested in the environments of local, Spark standalone cluster
         "Qiang Chen" .
 
 <https://bio.tools/soapsnp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_2815,
@@ -445931,7 +472814,7 @@ SOAPMetaS has been tested in the environments of local, Spark standalone cluster
     biotools:primaryContact "SOAP Support" .
 
 <https://bio.tools/soapsplice> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3320 ;
     sc:citation <https://doi.org/10.1038/nmeth.4106>,
@@ -445949,7 +472832,7 @@ SOAPMetaS has been tested in the environments of local, Spark standalone cluster
     sc:url "http://soap.genomics.org.cn/index.html" .
 
 <https://bio.tools/soapsv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199 ;
     sc:citation <https://doi.org/10.1038/nbt.1904>,
@@ -445963,7 +472846,7 @@ SOAPMetaS has been tested in the environments of local, Spark standalone cluster
     sc:url "http://soap.genomics.org.cn/index.html" .
 
 <https://bio.tools/soaptyping> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0632,
         edam:topic_2830,
@@ -445983,7 +472866,7 @@ SOAPTyping is a novel HLA genotyping tool capable of producing accurate predicti
     sc:url "https://github.com/BGI-flexlab/SOAPTyping" .
 
 <https://bio.tools/soba> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0089,
@@ -446002,7 +472885,7 @@ SOAPTyping is a novel HLA genotyping tool capable of producing accurate predicti
     biotools:primaryContact "GitHub Issues" .
 
 <https://bio.tools/sobdetector> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0622,
@@ -446021,7 +472904,7 @@ SOAPTyping is a novel HLA genotyping tool capable of producing accurate predicti
     biotools:primaryContact "Zoltan Szallasi" .
 
 <https://bio.tools/social_network> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0602 ;
     sc:citation <https://doi.org/10.12688/F1000RESEARCH.6804.3>,
@@ -446041,8 +472924,27 @@ SOAPTyping is a novel HLA genotyping tool capable of producing accurate predicti
     sc:url "http://baderlab.org/Software/SocialNetworkApp" ;
     biotools:primaryContact "Victor Kofia" .
 
+<https://bio.tools/socialh> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_3386,
+        edam:topic_3406,
+        edam:topic_3500 ;
+    sc:citation <https://doi.org/10.1371/JOURNAL.PONE.0271337>,
+        "pmcid:PMC9348686",
+        "pubmed:35921355" ;
+    sc:description "An R package for determining the social hierarchy of animals using data from individual electronic bins." ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "socialh" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://cran.r-project.org/web/packages/socialh/socialh.pdf> ;
+    sc:url "https://cran.r-project.org/web/packages/socialh/index.html" .
+
 <https://bio.tools/socket> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
@@ -446060,7 +472962,7 @@ SOAPTyping is a novel HLA genotyping tool capable of producing accurate predicti
     sc:url "http://coiledcoils.chm.bris.ac.uk/socket/" .
 
 <https://bio.tools/sockeye> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0622,
@@ -446081,7 +472983,7 @@ SOAPTyping is a novel HLA genotyping tool capable of producing accurate predicti
     biotools:primaryContact "Steven J.M. Jones" .
 
 <https://bio.tools/socs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3295 ;
@@ -446098,7 +473000,7 @@ SOAPTyping is a novel HLA genotyping tool capable of producing accurate predicti
     biotools:primaryContact "Nicholas H. Bergman" .
 
 <https://bio.tools/soda> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0219,
@@ -446116,7 +473018,7 @@ SOAPTyping is a novel HLA genotyping tool capable of producing accurate predicti
     sc:url "http://babylone.ulb.ac.be/SODa/index3.php" .
 
 <https://bio.tools/soda-astral> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0621,
@@ -446134,14 +473036,14 @@ SOAPTyping is a novel HLA genotyping tool capable of producing accurate predicti
 
 <https://bio.tools/soda-solubility> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Protein features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API",
         "Web application" ;
     sc:applicationSubCategory edam:topic_2814,
@@ -446162,8 +473064,20 @@ SOAPTyping is a novel HLA genotyping tool capable of producing accurate predicti
     sc:url "http://protein.bio.unipd.it/soda/" ;
     biotools:primaryContact <http://orcid.org/0000-0003-4525-7793> .
 
+<https://bio.tools/sodar> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3391 ;
+    sc:description "SODAR (system for omics data access and retrieval) is a software package for teh management of meta and mass data for (multi) omics experiments. Users can model their experiments using the ISA-tab (Investigation-Study-Assay) data model using SODAR's web based user interface. SODAR integrates with the the iRODS (integrated rules oriented data system) software for mass data management." ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "SODAR" ;
+    sc:operatingSystem "Linux",
+        "Mac" ;
+    sc:url "https://github.com/bihealth/sodar-server" .
+
 <https://bio.tools/sodock> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2275,
         edam:topic_3510,
@@ -446178,7 +473092,7 @@ SOAPTyping is a novel HLA genotyping tool capable of producing accurate predicti
     sc:url "http://140.113.239.45/sodock/" .
 
 <https://bio.tools/sodope> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0154,
         edam:topic_0203,
@@ -446197,7 +473111,7 @@ Optimise your protein coding sequences using smarter tools and algorithms!""" ;
     sc:url "https://tisigner.com/sodope" .
 
 <https://bio.tools/soesa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0176,
         edam:topic_2275,
@@ -446211,7 +473125,7 @@ Optimise your protein coding sequences using smarter tools and algorithms!""" ;
     sc:url "https://code.google.com/p/soesa/" .
 
 <https://bio.tools/sofi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Plug-in" ;
     sc:applicationSubCategory edam:topic_2229,
@@ -446231,7 +473145,7 @@ Optimise your protein coding sequences using smarter tools and algorithms!""" ;
     biotools:primaryContact "Theo Lasser" .
 
 <https://bio.tools/softpanel> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0623,
         edam:topic_0634,
@@ -446251,7 +473165,7 @@ Optimise your protein coding sequences using smarter tools and algorithms!""" ;
     biotools:primaryContact "Support" .
 
 <https://bio.tools/softparsmap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0102,
@@ -446264,18 +473178,8 @@ Optimise your protein coding sequences using smarter tools and algorithms!""" ;
     sc:softwareHelp <http://www.ii.uib.no/~steffpar/softparsmap/quick_start_guide/quick_start_guide.pdf> ;
     sc:url "https://liberles.cst.temple.edu/Software/Softparsmap/index.html" .
 
-<https://bio.tools/software_tools> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0209,
-        edam:topic_2258,
-        edam:topic_2840 ;
-    sc:citation <https://doi.org/10.1021/ACS.JCIM.9B00476>,
-        "pubmed:31525295" ;
-    sc:description "> LOW CONFIDENCE! | Small Dataset Curator and Small Dataset Modeler. Integration of Data Curation, Exhaustive Double Cross-Validation, and a Set of Optimal Model Selection Techniques | DTC lab - Software Tools - DTC lab is working in the field of molecular modelling mainly using different QSAR methodologies in various diverse area such as drug designing, toxicity, anti-oxidant studies etc" ;
-    sc:name "software tools" ;
-    sc:url "https://dtclab.webs.com/software-tools" .
-
 <https://bio.tools/softwipe> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3299,
         edam:topic_3372 ;
@@ -446287,7 +473191,7 @@ This tool is a follow-up to our work on code quality in the field of Bioinformat
     sc:url "https://github.com/adrianzap/SoftWipe/wiki" .
 
 <https://bio.tools/soggi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -446307,7 +473211,7 @@ This tool is a follow-up to our work on code quality in the field of Bioinformat
     biotools:primaryContact "Tom Carroll" .
 
 <https://bio.tools/soil_domestication> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0780,
         edam:topic_3314,
         edam:topic_3810 ;
@@ -446320,7 +473224,7 @@ This tool is a follow-up to our work on code quality in the field of Bioinformat
     sc:url "https://github.com/bulksoil/SoilDomestication" .
 
 <https://bio.tools/soilgrids> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0092 ;
     sc:citation <https://doi.org/10.1371/journal.pone.0169748> ;
@@ -446337,7 +473241,7 @@ This tool is a follow-up to our work on code quality in the field of Bioinformat
     biotools:primaryContact "Tomislav Hengl" .
 
 <https://bio.tools/soilgrids250m> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0092 ;
     sc:citation <https://doi.org/10.1371/journal.pone.0169748> ;
@@ -446354,7 +473258,7 @@ This tool is a follow-up to our work on code quality in the field of Bioinformat
     biotools:primaryContact "Tomislav Hengl" .
 
 <https://bio.tools/sol_genomics_network> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0602,
@@ -446376,7 +473280,7 @@ This tool is a follow-up to our work on code quality in the field of Bioinformat
     biotools:primaryContact "Contact Form" .
 
 <https://bio.tools/solar-eclipse> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3517 ;
     sc:citation <https://doi.org/10.1016/j.neuroimage.2015.02.050>,
@@ -446393,7 +473297,7 @@ This tool is a follow-up to our work on code quality in the field of Bioinformat
     sc:url "http://solar-eclipse-genetics.org/" .
 
 <https://bio.tools/solar3d> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0769 ;
     sc:citation <https://doi.org/10.20944/PREPRINTS202007.0556.V1> ;
@@ -446408,7 +473312,7 @@ Solar3D is a software application designed to interactively calculate solar irra
     sc:url "https://github.com/jian9695/Solar3D" .
 
 <https://bio.tools/solas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2269,
@@ -446426,7 +473330,7 @@ Solar3D is a software application designed to interactively calculate solar irra
     biotools:primaryContact "Hugues Richard" .
 
 <https://bio.tools/solexaqa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_3572 ;
@@ -446444,7 +473348,7 @@ Solar3D is a software application designed to interactively calculate solar irra
     biotools:primaryContact "Murray P. Cox" .
 
 <https://bio.tools/solexatools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0080,
@@ -446458,7 +473362,7 @@ Solar3D is a software application designed to interactively calculate solar irra
     biotools:primaryContact "SeqWare Support" .
 
 <https://bio.tools/solgenomics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
         edam:topic_3673 ;
@@ -446471,7 +473375,7 @@ Solar3D is a software application designed to interactively calculate solar irra
     sc:url "https://solgenomics.net" .
 
 <https://bio.tools/solgs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0622,
@@ -446491,22 +473395,22 @@ Solar3D is a software application designed to interactively calculate solar irra
 
 <https://bio.tools/solid2fastq> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:citation <https://doi.org/10.1093/nar/gkw343>,
@@ -446524,14 +473428,14 @@ Solar3D is a software application designed to interactively calculate solar irra
 
 <https://bio.tools/solid_qual_boxplot> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Image" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3572 ;
     sc:citation <https://doi.org/10.1093/nar/gkw343>,
@@ -446549,14 +473453,14 @@ Solar3D is a software application designed to interactively calculate solar irra
 
 <https://bio.tools/solid_qual_stats> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3572 ;
     sc:citation <https://doi.org/10.1093/nar/gkw343>,
@@ -446570,7 +473474,7 @@ Solar3D is a software application designed to interactively calculate solar irra
     biotools:primaryContact "Galaxy Support Team" .
 
 <https://bio.tools/solid_software_tools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0080 ;
@@ -446583,7 +473487,7 @@ Solar3D is a software application designed to interactively calculate solar irra
     biotools:primaryContact "Thermo Fisher help desk" .
 
 <https://bio.tools/solo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3308,
         edam:topic_3474,
@@ -446599,7 +473503,7 @@ Solar3D is a software application designed to interactively calculate solar irra
     sc:url "https://github.com/calico/solo" .
 
 <https://bio.tools/solodel> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0654,
@@ -446614,7 +473518,7 @@ Solar3D is a software application designed to interactively calculate solar irra
     sc:url "http://sourceforge.net/projects/solodel/" .
 
 <https://bio.tools/soltrannet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3047,
         edam:topic_3336,
@@ -446631,7 +473535,7 @@ Solar3D is a software application designed to interactively calculate solar irra
     biotools:primaryContact <https://orcid.org/0000-0002-1440-567X> .
 
 <https://bio.tools/solubis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_2275,
@@ -446647,7 +473551,7 @@ Solar3D is a software application designed to interactively calculate solar irra
     sc:url "http://solubis.switchlab.org/" .
 
 <https://bio.tools/solubis_2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0130,
         edam:topic_0199,
         edam:topic_0736,
@@ -446665,7 +473569,7 @@ Protein solubility is adapted to endogeneous protein abundance in the cell where
     sc:url "https://solubis.switchlab.org/" .
 
 <https://bio.tools/soluphred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0130,
         edam:topic_0736,
         edam:topic_3538 ;
@@ -446685,14 +473589,13 @@ SolupHred is the first phenomenological predictor that considers protein environ
 
 <https://bio.tools/soluprot> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1524" ;
-            sc:name "Protein solubility" ;
-            sc:sameAs "http://edamontology.org/data_1524" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1524" ;
+            sc:name "Protein solubility" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0121,
@@ -446726,7 +473629,7 @@ The predictor is in its current version based on random forest regression model
     biotools:primaryContact "SoluProt team" .
 
 <https://bio.tools/solyntus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0625,
         edam:topic_0780,
@@ -446751,7 +473654,7 @@ A growing collection of datasets, data-mining tools (under development) and gene
     sc:url "https://www.plantbreeding.wur.nl/Solyntus/" .
 
 <https://bio.tools/soma> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
@@ -446766,7 +473669,7 @@ A growing collection of datasets, data-mining tools (under development) and gene
     sc:url "http://www.cbcb.umd.edu/finishing/" .
 
 <https://bio.tools/somalier> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0625,
         edam:topic_2640,
@@ -446786,8 +473689,32 @@ Note that the somalier relate command runs extremely quickly (< 2 seconds for 60
     sc:name "somalier" ;
     sc:url "http://github.com/brentp/somalier" .
 
+<https://bio.tools/somamutdb> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0084,
+        edam:topic_0199,
+        edam:topic_0634,
+        edam:topic_2640,
+        edam:topic_3676 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAB914>,
+        "pmcid:PMC8728264",
+        "pubmed:34634815" ;
+    sc:description "A database of somatic mutations in normal human tissues." ;
+    sc:featureList edam:operation_0224,
+        edam:operation_3196,
+        edam:operation_3227,
+        edam:operation_3435 ;
+    sc:isAccessibleForFree true ;
+    sc:name "SomaMutDB" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://vijglab.einsteinmed.org/SomaMutDB" .
+
 <https://bio.tools/somart> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0659,
@@ -446804,7 +473731,7 @@ Note that the somalier relate command runs extremely quickly (< 2 seconds for 60
     sc:url "http://bakerlab.berkeley.edu/somart-webserver-mirna-sirna-analysis" .
 
 <https://bio.tools/somatic-sniper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_2640 ;
@@ -446814,7 +473741,7 @@ Note that the somalier relate command runs extremely quickly (< 2 seconds for 60
     sc:url "https://github.com/genome/somatic-sniper" .
 
 <https://bio.tools/somaticsignatures> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0199,
@@ -446835,8 +473762,30 @@ Note that the somalier relate command runs extremely quickly (< 2 seconds for 60
     sc:url "http://bioconductor.org/packages/release/bioc/html/SomaticSignatures.html" ;
     biotools:primaryContact <http://orcid.org/0000-0003-0070-4975> .
 
+<https://bio.tools/somaticsimu> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0196,
+        edam:topic_0199,
+        edam:topic_0654,
+        edam:topic_3277,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1093/bioinformatics/btac128>,
+        "pubmed:35258549" ;
+    sc:description "SomaticSiMu generates single and double base pair substitutions, and single base pair insertions and deletions of biologically representative mutation signature probabilities and combinations." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_2995,
+        edam:operation_3227 ;
+    sc:isAccessibleForFree true ;
+    sc:license "CC-BY-NC-4.0" ;
+    sc:name "SomaticSiMu" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/HillLab/SomaticSiMu" .
+
 <https://bio.tools/somatosim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0199,
@@ -446854,7 +473803,7 @@ Note that the somalier relate command runs extremely quickly (< 2 seconds for 60
     biotools:primaryContact "Celine S. Hong" .
 
 <https://bio.tools/sombrero> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654 ;
@@ -446873,7 +473822,7 @@ Note that the somalier relate command runs extremely quickly (< 2 seconds for 60
     sc:url "http://bioinf.nuigalway.ie/sombrero/" .
 
 <https://bio.tools/somde> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_2269,
         edam:topic_3308 ;
@@ -446889,7 +473838,7 @@ Algorithm for finding gene spatial pattern based on Gaussian process accelerated
     sc:url "https://pypi.org/project/somde" .
 
 <https://bio.tools/somena> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_1775 ;
     sc:author "Peter Hoenigschmid" ;
@@ -446910,14 +473859,12 @@ Algorithm for finding gene spatial pattern based on Gaussian process accelerated
 
 <https://bio.tools/sominaclust> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2538" ;
-            sc:name "Mutation identifier" ;
-            sc:sameAs "http://edamontology.org/data_2538" ] ;
+            sc:additionalType "http://edamontology.org/data_2538" ;
+            sc:name "Mutation identifier" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1246" ;
-            sc:name "Sequence cluster (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1246" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1246" ;
+            sc:name "Sequence cluster (nucleic acid)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2640 ;
     sc:citation <https://doi.org/10.1186/s12859-015-0555-7> ;
@@ -446932,7 +473879,7 @@ Algorithm for finding gene spatial pattern based on Gaussian process accelerated
     sc:url "http://bioinformatics.intec.ugent.be/sominaclust" .
 
 <https://bio.tools/somm4mc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3295,
         edam:topic_3474 ;
@@ -446954,7 +473901,7 @@ DNA N4-methylcytosine (4mC) modification occurs mainly in prokaryotic DNA.""" ;
     sc:url "http://www.insect-genome.com/SOMM4mC" .
 
 <https://bio.tools/sompnn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0820,
         edam:topic_2814,
@@ -446968,7 +473915,7 @@ DNA N4-methylcytosine (4mC) modification occurs mainly in prokaryotic DNA.""" ;
     sc:url "http://www.csbio.sjtu.edu.cn/bioinf/SOMPNN/" .
 
 <https://bio.tools/somruler> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0820,
@@ -446984,7 +473931,7 @@ DNA N4-methylcytosine (4mC) modification occurs mainly in prokaryotic DNA.""" ;
     sc:url "http://www.csbio.sjtu.edu.cn/bioinf/SOMRuler/" .
 
 <https://bio.tools/somvarius> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_3053,
@@ -447000,7 +473947,7 @@ DNA N4-methylcytosine (4mC) modification occurs mainly in prokaryotic DNA.""" ;
     sc:url "https://github.com/kylessmith/SomVarIUS" .
 
 <https://bio.tools/songexplorer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3474,
@@ -447020,7 +473967,7 @@ DNA N4-methylcytosine (4mC) modification occurs mainly in prokaryotic DNA.""" ;
     biotools:primaryContact "David L. Stern" .
 
 <https://bio.tools/sono> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3412,
         edam:topic_3452,
         edam:topic_3474,
@@ -447043,7 +473990,7 @@ Gallbladder Tumor, Stone in Gallbladder ...
     sc:url "http://www.sono.gallery" .
 
 <https://bio.tools/sonoviewer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3067,
         edam:topic_3384,
         edam:topic_3393 ;
@@ -447056,7 +474003,7 @@ Gallbladder Tumor, Stone in Gallbladder ...
     sc:url "http://www.castlemountain.dk/atlas/index.php?page=mulrecon&mulreconPage=sonoviewer" .
 
 <https://bio.tools/sop> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0632,
         edam:topic_0659,
@@ -447080,7 +474027,7 @@ Gallbladder Tumor, Stone in Gallbladder ...
     sc:url "https://github.com/eltonjrv/microbiome.westernu/tree/SOP" .
 
 <https://bio.tools/sopra> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3168 ;
@@ -447095,8 +474042,30 @@ Gallbladder Tumor, Stone in Gallbladder ...
     sc:softwareVersion "1.4.6" ;
     sc:url "http://www.physics.rutgers.edu/~anirvans/SOPRA/" .
 
+<https://bio.tools/sorghumbase> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_0780,
+        edam:topic_3053,
+        edam:topic_3489,
+        edam:topic_3810 ;
+    sc:citation <https://doi.org/10.1007/S00425-022-03821-6>,
+        "pmcid:PMC8752523",
+        "pubmed:35015132" ;
+    sc:description "A web-based portal for sorghum genetic information and community advancement." ;
+    sc:featureList edam:operation_0525,
+        edam:operation_2421,
+        edam:operation_3208 ;
+    sc:isAccessibleForFree true ;
+    sc:name "SorghumBase" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://sorghumbase.org/guides" .
+
 <https://bio.tools/sort2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0102,
@@ -447119,14 +474088,14 @@ Gallbladder Tumor, Stone in Gallbladder ...
 
 <https://bio.tools/sortgff> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2305" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1975" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0622,
@@ -447145,7 +474114,7 @@ Gallbladder Tumor, Stone in Gallbladder ...
     biotools:primaryContact "Galaxy Support Team" .
 
 <https://bio.tools/sortmerna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_3308 ;
@@ -447161,7 +474130,7 @@ Gallbladder Tumor, Stone in Gallbladder ...
     sc:url "http://bioinfo.lifl.fr/RNA/sortmerna/" .
 
 <https://bio.tools/sortn-seq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0749,
@@ -447184,8 +474153,29 @@ Gallbladder Tumor, Stone in Gallbladder ...
         "Windows" ;
     sc:url "https://github.com/JacksonLab/SorTn-seq" .
 
+<https://bio.tools/sortpred> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0091,
+        edam:topic_0634,
+        edam:topic_0821,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1016/J.CSBJ.2021.12.014>,
+        "pmcid:PMC8703055",
+        "pubmed:34976319" ;
+    sc:description "The first machine learning based predictor to identify bacterial sortases and their classes using sequence-derived information." ;
+    sc:featureList edam:operation_0267,
+        edam:operation_0303,
+        edam:operation_0310 ;
+    sc:isAccessibleForFree true ;
+    sc:name "SortPred" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://procarb.org/sortpred" .
+
 <https://bio.tools/sorva> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0622,
@@ -447207,7 +474197,7 @@ Gallbladder Tumor, Stone in Gallbladder ...
     sc:url "https://sorva.genome.ucla.edu" .
 
 <https://bio.tools/sos-optimisation> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3068,
         edam:topic_3315,
         edam:topic_3474 ;
@@ -447223,7 +474213,7 @@ SOS is a research oriented software platform for Metaheuristic Optimisation (Sto
     sc:url "https://sites.google.com/site/facaraff/research/sos" .
 
 <https://bio.tools/sosui> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -447246,18 +474236,18 @@ SOS is a research oriented software platform for Metaheuristic Optimisation (Sto
 
 <https://bio.tools/souporcell> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0842" ;
-            sc:name "Identifier" ;
-            sc:sameAs "http://edamontology.org/data_0842" ],
+            sc:additionalType "http://edamontology.org/data_1383" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Nucleic acid sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1383" ;
-            sc:name "Nucleic acid sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_1383" ] ;
+            sc:additionalType "http://edamontology.org/data_0842" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Identifier" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence variations" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203 ;
     sc:citation <https://doi.org/10.1038/s41592-020-0820-1> ;
@@ -447272,10 +474262,9 @@ SOS is a research oriented software platform for Metaheuristic Optimisation (Sto
 
 <https://bio.tools/soupx> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:name "Expression data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3308 ;
     sc:description "Quantify, profile and remove ambient mRNA contamination (the \"soup\") from droplet based single cell RNA-seq experiments." ;
@@ -447286,7 +474275,7 @@ SOS is a research oriented software platform for Metaheuristic Optimisation (Sto
     sc:url "https://github.com/constantAmateur/SoupX" .
 
 <https://bio.tools/source> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0621,
@@ -447310,14 +474299,14 @@ SOS is a research oriented software platform for Metaheuristic Optimisation (Sto
 
 <https://bio.tools/sourcer> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2531" ;
-            sc:name "Experiment report" ;
-            sc:sameAs "http://edamontology.org/data_2531" ] ;
+            sc:additionalType "http://edamontology.org/data_2531" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Experiment report" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1636" ;
-            sc:name "Heat map" ;
-            sc:sameAs "http://edamontology.org/data_1636" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1636" ;
+            sc:encodingFormat "http://edamontology.org/format_2060" ;
+            sc:name "Heat map" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3301,
@@ -447340,10 +474329,10 @@ SOS is a research oriented software platform for Metaheuristic Optimisation (Sto
 
 <https://bio.tools/sourmash> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2975" ;
-            sc:name "Nucleic acid sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_2975" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2975" ;
+            sc:encodingFormat "http://edamontology.org/format_2200" ;
+            sc:name "Nucleic acid sequence (raw)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3307 ;
@@ -447361,7 +474350,7 @@ SOS is a research oriented software platform for Metaheuristic Optimisation (Sto
     biotools:primaryContact "C. Titus Brown" .
 
 <https://bio.tools/soybase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0625,
@@ -447384,7 +474373,7 @@ SOS is a research oriented software platform for Metaheuristic Optimisation (Sto
     biotools:primaryContact "Contact Form" .
 
 <https://bio.tools/soyfn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0659,
@@ -447407,7 +474396,7 @@ SOS is a research oriented software platform for Metaheuristic Optimisation (Sto
         "Yungang Xu" .
 
 <https://bio.tools/soyfungigcn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0621,
@@ -447430,7 +474419,7 @@ SOS is a research oriented software platform for Metaheuristic Optimisation (Sto
     sc:url "https://github.com/almeidasilvaf/SoyFungiGCN" .
 
 <https://bio.tools/sp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3332,
         edam:topic_3569 ;
@@ -447444,7 +474433,7 @@ SOS is a research oriented software platform for Metaheuristic Optimisation (Sto
     sc:url "http://stoop.ini.uzh.ch/research/clustering" .
 
 <https://bio.tools/sp-gan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3382 ;
     sc:citation <https://doi.org/10.1109/TNNLS.2020.3005574>,
         "pubmed:32649282" ;
@@ -447458,7 +474447,7 @@ This paper presents a new Self-growing and Pruning Generative Adversarial Networ
     sc:url "https://github.com/Lambert-chen/SPGAN.git" .
 
 <https://bio.tools/spa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0625,
         edam:topic_0634,
@@ -447473,7 +474462,7 @@ This paper presents a new Self-growing and Pruning Generative Adversarial Networ
     sc:url "http://pmglab.top/spa" .
 
 <https://bio.tools/space> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0082,
@@ -447491,7 +474480,7 @@ This paper presents a new Self-growing and Pruning Generative Adversarial Networ
     sc:url "http://ligin.weizmann.ac.il/space/" .
 
 <https://bio.tools/spaced_words> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2259,
@@ -447509,7 +474498,7 @@ This paper presents a new Self-growing and Pruning Generative Adversarial Networ
         "lhahn" .
 
 <https://bio.tools/spacelog> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0602,
         edam:topic_3170 ;
@@ -447525,7 +474514,7 @@ We develop SpaceLog that employs log penalty within the framework of an earlier
     sc:url "https://github.com/wuqian77/SpaceLog" .
 
 <https://bio.tools/spacem> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3172,
@@ -447549,7 +474538,7 @@ We develop SpaceLog that employs log penalty within the framework of an earlier
     sc:url "https://metaspace2020.eu/project/Rappez_2021_SpaceM" .
 
 <https://bio.tools/spacem3> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3365,
@@ -447565,8 +474554,29 @@ We develop SpaceLog that employs log penalty within the framework of an earlier
         <http://spacem3.gforge.inria.fr/data/Manual_SpaCEM3.pdf> ;
     sc:url "http://spacem3.gforge.inria.fr/" .
 
+<https://bio.tools/spacemake> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0769,
+        edam:topic_3170,
+        edam:topic_3308,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.1101/2021.11.07.467598> ;
+    sc:description "Processing and analysis of large-scale spatial transcriptomics data." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_0337,
+        edam:operation_3933 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-2.0" ;
+    sc:name "spacemake" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://spacemake.readthedocs.io/en/latest/index.html> ;
+    sc:url "https://github.com/rajewsky-lab/spacemake" .
+
 <https://bio.tools/spacepac> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -447589,7 +474599,7 @@ We develop SpaceLog that employs log penalty within the framework of an earlier
         "Gregory Ryslik" .
 
 <https://bio.tools/spacepharer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1101/2020.05.15.090266> ;
@@ -447603,14 +474613,14 @@ We develop SpaceLog that employs log penalty within the framework of an earlier
 
 <https://bio.tools/spacepro> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0857" ;
-            sc:name "Sequence search results" ;
-            sc:sameAs "http://edamontology.org/data_0857" ] ;
+            sc:additionalType "http://edamontology.org/data_0857" ;
+            sc:encodingFormat "http://edamontology.org/format_3655" ;
+            sc:name "Sequence search results" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -447638,7 +474648,7 @@ We develop SpaceLog that employs log penalty within the framework of an earlier
     sc:url "http://tppms.org/" .
 
 <https://bio.tools/spacer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0176,
@@ -447661,7 +474671,7 @@ We develop SpaceLog that employs log penalty within the framework of an earlier
         "Igor Berezovsky" .
 
 <https://bio.tools/spacer2pam> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0769,
@@ -447681,56 +474691,43 @@ We develop SpaceLog that employs log penalty within the framework of an earlier
         "Windows" ;
     sc:url "https://github.com/grybnicky/Spacer2PAM" .
 
+<https://bio.tools/spacnacs> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3056,
+        edam:topic_3958 ;
+    sc:description "SPACNACS is a crowdsourcing initiative to provide information about Copy Number Variations of the Spanish population to the scientific/medical community." ;
+    sc:license "GPL-2.0" ;
+    sc:name "SPACNACS" ;
+    sc:softwareHelp <https://github.com/babelomics/SPACNACS/wiki> ;
+    sc:url "http://csvs.clinbioinfosspa.es/spacnacs" .
+
 <https://bio.tools/spades> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
-        [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
-        [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
-        [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
-        [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
-        [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
-        [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196 ;
     sc:citation <https://doi.org/10.1089/cmb.2012.0021>,
@@ -447745,7 +474742,7 @@ We develop SpaceLog that employs log penalty within the framework of an earlier
     sc:url "http://cab.spbu.ru/software/spades/" .
 
 <https://bio.tools/spads> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_2269,
@@ -447763,8 +474760,31 @@ We develop SpaceLog that employs log penalty within the framework of an earlier
     sc:softwareHelp <http://ebe.ulb.ac.be/ebe/SPADS_files/SPADS_1.0_manual_221116.pdf> ;
     sc:url "http://ebe.ulb.ac.be/ebe/SPADS.html" .
 
+<https://bio.tools/spagcn> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0204,
+        edam:topic_2640,
+        edam:topic_3170,
+        edam:topic_3308,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1038/S41592-021-01255-8>,
+        "pubmed:34711970" ;
+    sc:description "Integrating gene expression, spatial location and histology to identify spatial domains and spatially variable genes by graph convolutional network." ;
+    sc:featureList edam:operation_0313,
+        edam:operation_3223,
+        edam:operation_3436,
+        edam:operation_3891 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "SpaGCN" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/jianhuupenn/SpaGCN" .
+
 <https://bio.tools/spage> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3308,
         edam:topic_3500,
@@ -447785,7 +474805,7 @@ Python implementation can be found in the 'SpaGE' folder. The SpaGE function tak
     sc:url "https://github.com/tabdelaal/SpaGE" .
 
 <https://bio.tools/spage2vec> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3308,
         edam:topic_3382,
@@ -447806,7 +474826,7 @@ Generate spatial gene expression network from in situ transcriptomic data and tr
     sc:url "https://github.com/wahlby-lab/spage2vec" .
 
 <https://bio.tools/spainudp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0625,
@@ -447825,7 +474845,7 @@ Generate spatial gene expression network from in situ transcriptomic data and tr
     sc:url "http://spainudp.isciii.es" .
 
 <https://bio.tools/spang> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0607,
         edam:topic_3071,
@@ -447844,7 +474864,7 @@ Generate spatial gene expression network from in situ transcriptomic data and tr
     biotools:primaryContact "Support" .
 
 <https://bio.tools/spar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_3170,
@@ -447861,8 +474881,28 @@ Generate spatial gene expression network from in situ transcriptomic data and tr
     sc:softwareHelp <https://www.lisanwanglab.org/SPAR/tutorials> ;
     sc:url "https://www.lisanwanglab.org/SPAR/" .
 
+<https://bio.tools/sparclink> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_3068,
+        edam:topic_3303,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1101/2021.10.22.465507> ;
+    sc:description "An interactive tool to visualize the impact of the SPARC program." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_2421,
+        edam:operation_2422 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "SPARClink" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://fairdataihub.org/sparclink" .
+
 <https://bio.tools/sparcs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0097,
@@ -447886,7 +474926,7 @@ Generate spatial gene expression network from in situ transcriptomic data and tr
     sc:url "http://csb.cs.mcgill.ca/sparcs/" .
 
 <https://bio.tools/spark-cpvs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2258,
         edam:topic_2275,
@@ -447902,7 +474942,7 @@ Generate spatial gene expression network from in situ transcriptomic data and tr
     biotools:primaryContact "Laeeq Ahmed" .
 
 <https://bio.tools/spark-ngs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3168,
         edam:topic_3512 ;
@@ -447918,7 +474958,7 @@ SparK will exctract gene and transcript information from column 3 of the gff fil
     sc:url "https://github.com/harbourlab/SparK" .
 
 <https://bio.tools/spark-vs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2258,
@@ -447937,7 +474977,7 @@ SparK will exctract gene and transcript information from column 3 of the gff fil
     biotools:primaryContact "Marco Capuccini" .
 
 <https://bio.tools/spark-x> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2229,
@@ -447960,8 +475000,25 @@ SparK will exctract gene and transcript information from column 3 of the gff fil
         <https://xzhoulab.github.io/SPARK/02_SPARK_Example/> ;
     sc:url "https://github.com/xzhoulab/SPARK" .
 
+<https://bio.tools/sparkgc> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_0622,
+        edam:topic_2815 ;
+    sc:citation <https://doi.org/10.1186/S12859-022-04825-5>,
+        "pmcid:PMC9310413",
+        "pubmed:35879669" ;
+    sc:description "Spark based genome compression for large collections of genomes." ;
+    sc:featureList edam:operation_3211 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "SparkGC" ;
+    sc:operatingSystem "Linux" ;
+    sc:url "https://github.com/haichangyao/SparkGC" .
+
 <https://bio.tools/sparkinferno> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_0769,
         edam:topic_3173,
@@ -447976,7 +475033,7 @@ SparK will exctract gene and transcript information from column 3 of the gff fil
     sc:url "https://bitbucket.org/wanglab-upenn/SparkINFERNO" .
 
 <https://bio.tools/sparkra> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0769,
         edam:topic_3170,
@@ -447994,7 +475051,7 @@ The rapid proliferation of low-cost RNA-seq data has resulted in a growing inter
     sc:url "https://github.com/SaiyiW/SparkRA" .
 
 <https://bio.tools/sparqlgraph> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_3070,
@@ -448011,7 +475068,7 @@ The rapid proliferation of low-cost RNA-seq data has resulted in a growing inter
     sc:url "http://sparqlgraph.i-med.ac.at/" .
 
 <https://bio.tools/sparrpowr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_2640,
@@ -448030,22 +475087,22 @@ The rapid proliferation of low-cost RNA-seq data has resulted in a growing inter
 
 <https://bio.tools/sparse> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3495" ;
-            sc:name "RNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3495" ] ;
+            sc:additionalType "http://edamontology.org/data_3495" ;
+            sc:encodingFormat "http://edamontology.org/format_2200" ;
+            sc:name "RNA sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1465" ;
-            sc:name "RNA structure" ;
-            sc:sameAs "http://edamontology.org/data_1465" ],
+            sc:additionalType "http://edamontology.org/data_1916" ;
+            sc:encodingFormat "http://edamontology.org/format_3508" ;
+            sc:name "Alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1916" ;
-            sc:name "Alignment" ;
-            sc:sameAs "http://edamontology.org/data_1916" ],
+            sc:additionalType "http://edamontology.org/data_1465" ;
+            sc:encodingFormat "http://edamontology.org/format_3466" ;
+            sc:name "RNA structure" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0872" ;
-            sc:name "Phylogenetic tree" ;
-            sc:sameAs "http://edamontology.org/data_0872" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0872" ;
+            sc:encodingFormat "http://edamontology.org/format_1910" ;
+            sc:name "Phylogenetic tree" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0097 ;
@@ -448072,7 +475129,7 @@ The rapid proliferation of low-cost RNA-seq data has resulted in a growing inter
         "Sebastian Will" .
 
 <https://bio.tools/sparsedossa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3174,
         edam:topic_3697 ;
@@ -448093,7 +475150,7 @@ The rapid proliferation of low-cost RNA-seq data has resulted in a growing inter
         "George Weingart" .
 
 <https://bio.tools/sparsedossa2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0625,
@@ -448111,7 +475168,7 @@ The rapid proliferation of low-cost RNA-seq data has resulted in a growing inter
     biotools:primaryContact "Curtis Huttenhower" .
 
 <https://bio.tools/sparseiso> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3308,
@@ -448125,8 +475182,30 @@ The rapid proliferation of low-cost RNA-seq data has resulted in a growing inter
     sc:url "https://github.com/henryxushi/SparseIso" ;
     biotools:primaryContact "Jianhua Xuan" .
 
+<https://bio.tools/sparsepro> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_0625,
+        edam:topic_2885,
+        edam:topic_3337,
+        edam:topic_3517 ;
+    sc:citation <https://doi.org/10.1101/2021.10.04.463133> ;
+    sc:description "An efficient genome-wide fine-mapping method integrating summary statistics and functional annotations." ;
+    sc:featureList edam:operation_3196,
+        edam:operation_3226,
+        edam:operation_3557,
+        edam:operation_3661 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "SparsePro" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/zhwm/SparsePro" .
+
 <https://bio.tools/sparsesignatures> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_3063 ;
@@ -448143,7 +475222,7 @@ The rapid proliferation of low-cost RNA-seq data has resulted in a growing inter
     biotools:primaryContact "Daniele Ramazzotti" .
 
 <https://bio.tools/sparta> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3308 ;
@@ -448172,7 +475251,7 @@ The rapid proliferation of low-cost RNA-seq data has resulted in a growing inter
         "Tracy K. Teal" .
 
 <https://bio.tools/spartaabc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0084,
@@ -448192,7 +475271,7 @@ The rapid proliferation of low-cost RNA-seq data has resulted in a growing inter
     sc:url "http://spartaabc.tau.ac.il/webserver" .
 
 <https://bio.tools/spartan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2259 ;
@@ -448212,7 +475291,7 @@ The rapid proliferation of low-cost RNA-seq data has resulted in a growing inter
     biotools:primaryContact <http://orcid.org/0000-0003-4411-1776> .
 
 <https://bio.tools/spartan_proteomics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0204,
@@ -448235,7 +475314,7 @@ The rapid proliferation of low-cost RNA-seq data has resulted in a growing inter
     sc:url "https://github.com/osmanbeyoglulab/SPaRTAN/" .
 
 <https://bio.tools/spasiba> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3053,
         edam:topic_3293,
@@ -448249,7 +475328,7 @@ The rapid proliferation of low-cost RNA-seq data has resulted in a growing inter
     sc:url "http://www2.imm.dtu.dk/~gigu/Spasiba/" .
 
 <https://bio.tools/spata> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3170,
         edam:topic_3308,
@@ -448276,7 +475355,7 @@ Dissect your samples into segments in order to compare different aspects across
     sc:url "https://themilolab.github.io/SPATA" .
 
 <https://bio.tools/spatemhtp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0769,
         edam:topic_0780,
@@ -448301,7 +475380,7 @@ The script folder contain a script that allow the user to perform analyses of ti
     sc:url "https://github.com/ICRISAT-GEMS/SpaTemHTP" .
 
 <https://bio.tools/spathial> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3170,
         edam:topic_3299,
@@ -448319,7 +475398,7 @@ A generic tool for manifold analysis. It allows to infer a relevant transition o
     sc:url "https://cran.r-project.org/web/packages/spathial/index.html" .
 
 <https://bio.tools/spatial-activity-image> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -448334,26 +475413,8 @@ A generic tool for manifold analysis. It allows to infer a relevant transition o
     sc:url "https://www.mathworks.com/matlabcentral/fileexchange/12269-spatial-activity-of-an-image" ;
     biotools:primaryContact "Bjoern Eskofier" .
 
-<https://bio.tools/spatial_transcrIptomics_deconvolution> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
-    sc:additionalType "Command-line tool" ;
-    sc:applicationSubCategory edam:topic_0099,
-        edam:topic_3170,
-        edam:topic_3308 ;
-    sc:citation <https://doi.org/10.1101/2021.09.08.459458> ;
-    sc:description "Spatial TRanscrIptomics DEconvolution by topic modeling (STRIDE), is a computational method to decompose cell types from spatial mixtures by leveraging topic profiles trained from single-cell transcriptomics. Besides the cell-type composition deconvolution, STRIDE also provides several downstream analysis functions, including  signature (i.e., topic) detection and visualization,  spatial clustering and domain identification based on neighborhood cell populations and reconstruction of three-dimensional architecture from sequential ST slides of the same tissue." ;
-    sc:featureList edam:operation_3629,
-        edam:operation_3907 ;
-    sc:isAccessibleForFree true ;
-    sc:license "GPL-3.0" ;
-    sc:name "STRIDE" ;
-    sc:operatingSystem "Linux",
-        "Mac",
-        "Windows" ;
-    sc:url "https://github.com/DongqingSun96/STRIDE" .
-
 <https://bio.tools/spatialcpie> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_3170,
         edam:topic_3308 ;
@@ -448372,14 +475433,13 @@ SpatialCPie is an R package designed to facilitate cluster evaluation for spatia
 
 <https://bio.tools/spatialde> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Gene expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ] ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:name "Gene expression data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0928" ;
-            sc:name "Gene expression profile" ;
-            sc:sameAs "http://edamontology.org/data_0928" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0928" ;
+            sc:encodingFormat "http://edamontology.org/format_2058" ;
+            sc:name "Gene expression profile" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2269,
@@ -448401,8 +475461,28 @@ SpatialCPie is an R package designed to facilitate cluster evaluation for spatia
     sc:url "https://github.com/Teichlab/SpatialDE" ;
     biotools:primaryContact "Valentine Svensson" .
 
+<https://bio.tools/spatialde2> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0769,
+        edam:topic_3170,
+        edam:topic_3308 ;
+    sc:citation <https://doi.org/10.1101/2021.10.27.466045> ;
+    sc:description "Fast and localized variance component analysis of spatial transcriptomics.)" ;
+    sc:featureList edam:operation_0313,
+        edam:operation_0314,
+        edam:operation_3659 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "SpatialDE2" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://www.bioconductor.org/packages/release/bioc/manuals/spatialDE/man/spatialDE.pdf> ;
+    sc:url "https://github.com/PMBio/SpatialDE" .
+
 <https://bio.tools/spatialexperiment> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -448421,8 +475501,28 @@ Defines S4 classes for storing data for spatial experiments. Main examples are r
     sc:name "SpatialExperiment" ;
     sc:url "https://bioconductor.org/packages/SpatialExperiment" .
 
+<https://bio.tools/spatialge> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0625,
+        edam:topic_3170,
+        edam:topic_3308 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC145>,
+        "pubmed:35258565" ;
+    sc:description "Quantification and visualization of the tumor microenvironment heterogeneity using spatial transcriptomics." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3629,
+        edam:operation_3799 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "spatialGE" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/FridleyLab/spatialGE" .
+
 <https://bio.tools/spatiallibd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3170,
@@ -448439,8 +475539,31 @@ Defines S4 classes for storing data for spatial experiments. Main examples are r
     sc:softwareHelp <http://research.libd.org/spatialLIBD/> ;
     sc:url "http://bioconductor.org/packages/spatialLIBD" .
 
+<https://bio.tools/spatialtime> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_2269,
+        edam:topic_3382,
+        edam:topic_3518 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAB757>,
+        "pmcid:PMC8652029",
+        "pubmed:34734969" ;
+    sc:description "R package and Shiny application for visualization and analysis of immunofluorescence data." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3443,
+        edam:operation_3799 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Other" ;
+    sc:name "spatialTIME" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://cran.r-project.org/web/packages/spatialTIME/spatialTIME.pdf>,
+        <https://cran.r-project.org/web/packages/spatialTIME/vignettes/intro.html> ;
+    sc:url "https://github.com/FridleyLab/spatialTIME" .
+
 <https://bio.tools/spatio-temporal> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0160,
         edam:topic_0610,
@@ -448459,7 +475582,7 @@ Handling and Analyzing Spatio-Temporal Data.""" ;
     sc:url "https://cran.r-project.org/web/views/SpatioTemporal.html" .
 
 <https://bio.tools/spatkin> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0176,
         edam:topic_0602,
@@ -448478,7 +475601,7 @@ Handling and Analyzing Spatio-Temporal Data.""" ;
     biotools:primaryContact "Support" .
 
 <https://bio.tools/spatstat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_2640,
@@ -448496,7 +475619,7 @@ Handling and Analyzing Spatio-Temporal Data.""" ;
     biotools:primaryContact <https://orcid.org/0000-0002-3101-9180> .
 
 <https://bio.tools/spatt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0654,
@@ -448516,7 +475639,7 @@ Handling and Analyzing Spatio-Temporal Data.""" ;
     biotools:primaryContact "Gregory Nuel" .
 
 <https://bio.tools/spatter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3512,
@@ -448533,7 +475656,7 @@ Handling and Analyzing Spatio-Temporal Data.""" ;
     sc:url "http://www.nongnu.org/spatter/" .
 
 <https://bio.tools/spatzie> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0621,
@@ -448550,8 +475673,54 @@ Handling and Analyzing Spatio-Temporal Data.""" ;
     sc:url "https://spatzie.mit.edu" ;
     biotools:primaryContact <https://orcid.org/0000-0003-1709-4034> .
 
+<https://bio.tools/spcards> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0622,
+        edam:topic_3120,
+        edam:topic_3170,
+        edam:topic_3320,
+        edam:topic_3676 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAC686>,
+        "pmcid:PMC9458456",
+        "pubmed:35993808" ;
+    sc:description "Performance evaluation of differential splicing analysis methods and splicing analytics platform construction." ;
+    sc:featureList edam:operation_0264,
+        edam:operation_0433,
+        edam:operation_0446,
+        edam:operation_3227,
+        edam:operation_3461 ;
+    sc:isAccessibleForFree true ;
+    sc:name "SPCards" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://www.genemed.tech/spcards/analysis" .
+
+<https://bio.tools/spcs> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_2640,
+        edam:topic_3170,
+        edam:topic_3308,
+        edam:topic_3315,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1101/2021.11.02.467030> ;
+    sc:description "A Spatial and Pattern Combined Smoothing Method for Spatial Transcriptomic Expression." ;
+    sc:featureList edam:operation_0313,
+        edam:operation_3223,
+        edam:operation_3359 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "SPCS" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://github.com/Usos/SPCS/blob/main/tutorial.md> ;
+    sc:url "https://github.com/Usos/SPCS" .
+
 <https://bio.tools/spd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0203 ;
     sc:citation <https://doi.org/10.1371/journal.pcbi.1001123> ;
@@ -448562,8 +475731,29 @@ Handling and Analyzing Spatio-Temporal Data.""" ;
     sc:softwareVersion "20131201" ;
     sc:url "http://pengqiu.gatech.edu/software/SPD/index.html" .
 
+<https://bio.tools/spd-cnn> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0769,
+        edam:topic_3382,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.3389/FNBOT.2022.958052>,
+        "pmcid:PMC9383414",
+        "pubmed:35990886" ;
+    sc:description "A plain CNN-based model using the symmetric positive definite matrices for cross-subject EEG classification with meta-transfer-learning." ;
+    sc:featureList edam:operation_3454,
+        edam:operation_3891,
+        edam:operation_3937 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "SPD-CNN" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/sabinechen/SPD-CNN-Using-Meta-Transfer-Learing-EEG-Cross-Subject-learning" .
+
 <https://bio.tools/spdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_3168,
         edam:topic_3174,
@@ -448581,7 +475771,7 @@ The rapid and accurate diagnosis of swine diseases is indispensable for reducing
     sc:url "http://spdatabase.com:2080/" .
 
 <https://bio.tools/spde> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0632,
         edam:topic_0780,
         edam:topic_3168,
@@ -448595,7 +475785,7 @@ The rapid and accurate diagnosis of swine diseases is indispensable for reducing
     sc:url "https://github.com/simon19891216/SPDEv1.2.git" .
 
 <https://bio.tools/spdh> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0130,
         edam:topic_0154,
@@ -448613,16 +475803,39 @@ SPDH ├─conf #configuration file ├─datasets #All data │ ├─train_seq
     sc:name "SPDH" ;
     sc:url "https://github.com/xialab-ahu/SPDH" .
 
+<https://bio.tools/speach_af> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0121,
+        edam:topic_0130,
+        edam:topic_0209,
+        edam:topic_0736,
+        edam:topic_0820 ;
+    sc:citation <https://doi.org/10.1371/JOURNAL.PCBI.1010483>,
+        "pmcid:PMC9436118",
+        "pubmed:35994486" ;
+    sc:description "Sampling protein ensembles and conformational heterogeneity with Alphafold2." ;
+    sc:featureList edam:operation_0474,
+        edam:operation_3891,
+        edam:operation_4009 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "SPEACH_AF" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/RSvan/SPEACH_AF" .
+
 <https://bio.tools/speaq> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3488" ;
-            sc:name "NMR spectrum" ;
-            sc:sameAs "http://edamontology.org/data_3488" ] ;
+            sc:additionalType "http://edamontology.org/data_3488" ;
+            sc:encodingFormat "http://edamontology.org/format_3245" ;
+            sc:name "NMR spectrum" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3617" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0593,
         edam:topic_3172,
@@ -448643,7 +475856,7 @@ SPDH ├─conf #configuration file ├─datasets #All data │ ├─train_seq
     biotools:primaryContact "Charlie Beirnaert" .
 
 <https://bio.tools/speaqeasy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0769,
         edam:topic_3068,
@@ -448660,8 +475873,31 @@ SPDH ├─conf #configuration file ├─datasets #All data │ ├─train_seq
         <https://github.com/LieberInstitute/SPEAQeasy-example> ;
     sc:url "http://research.libd.org/SPEAQeasy" .
 
+<https://bio.tools/spear> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_0199,
+        edam:topic_0622,
+        edam:topic_0749 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC391>,
+        "pmcid:PMC9344845",
+        "pubmed:35695776" ;
+    sc:description "SPEAR is an annotation tool for SARS-CoV-2 genomes, it provides comprehensive annotation of all protein products, in particular, Spike (S) mutations are annotated with a range of scores that provide indications of their likely effects on ACE2 binding, and likely contribution to immune escape." ;
+    sc:featureList edam:operation_0558,
+        edam:operation_3192,
+        edam:operation_3218,
+        edam:operation_3227 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "SPEAR" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/m-crown/SPEAR" .
+
 <https://bio.tools/spears> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3810,
         edam:topic_3943 ;
@@ -448677,7 +475913,7 @@ SPDH ├─conf #configuration file ├─datasets #All data │ ├─train_seq
     sc:url "https://github.com/maizeatlas/spears" .
 
 <https://bio.tools/spec2vec> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0218,
         edam:topic_3172,
@@ -448697,7 +475933,7 @@ Analysis and benchmarking of mass spectra similarity measures using gnps data se
     sc:url "https://github.com/iomega/spec2vec" .
 
 <https://bio.tools/specarray> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -448710,8 +475946,26 @@ Analysis and benchmarking of mass spectra similarity measures using gnps data se
     sc:softwareHelp <http://tools.proteomecenter.org/wiki/index.php?title=Software:SpecArray> ;
     sc:url "http://tools.proteomecenter.org/SpecArray.php" .
 
+<https://bio.tools/specdb> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0593,
+        edam:topic_3071,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1016/J.JMR.2022.107268>,
+        "pubmed:35930941" ;
+    sc:description "A relational database for archiving biomolecular NMR spectral data." ;
+    sc:featureList edam:operation_0224 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "SpecDB" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.rpi.edu/RPIBioinformatics/SpecDB" .
+
 <https://bio.tools/spechap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3173,
         edam:topic_3574,
@@ -448731,18 +475985,17 @@ Analysis and benchmarking of mass spectra similarity measures using gnps data se
 
 <https://bio.tools/speci> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2886" ;
-            sc:name "Protein sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2886" ],
+            sc:additionalType "http://edamontology.org/data_2887" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Nucleic acid sequence record" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2887" ;
-            sc:name "Nucleic acid sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2887" ] ;
+            sc:additionalType "http://edamontology.org/data_2886" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1868" ;
-            sc:name "Taxon" ;
-            sc:sameAs "http://edamontology.org/data_1868" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1868" ;
+            sc:name "Taxon" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0622,
@@ -448766,7 +476019,7 @@ Analysis and benchmarking of mass spectra similarity measures using gnps data se
     biotools:primaryContact <http://orcid.org/0000-0003-1429-7485> .
 
 <https://bio.tools/specialize> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0121,
@@ -448784,7 +476037,7 @@ Analysis and benchmarking of mass spectra similarity measures using gnps data se
     sc:url "http://proteomics.ucsd.edu/software-tools/specialize/" .
 
 <https://bio.tools/species_delimitation> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0637,
         edam:topic_3293,
@@ -448800,7 +476053,7 @@ Analysis and benchmarking of mass spectra similarity measures using gnps data se
     sc:url "http://www.fos.auckland.ac.nz/~howardross/software.html" .
 
 <https://bio.tools/speciesprimer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0632,
         edam:topic_0749,
         edam:topic_0769,
@@ -448822,7 +476075,7 @@ The SpeciesPrimer pipeline is intended to help researchers finding specific prim
     sc:url "http://primer3.ut.ee" .
 
 <https://bio.tools/speciesrax> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0621,
@@ -448841,8 +476094,27 @@ The SpeciesPrimer pipeline is intended to help researchers finding specific prim
     sc:url "https://github.com/BenoitMorel/GeneRax" ;
     biotools:primaryContact "Benoit Morel" .
 
+<https://bio.tools/speckle> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_2229,
+        edam:topic_3170,
+        edam:topic_3308 ;
+    sc:citation <https://doi.org/10.1101/2021.11.28.470236> ;
+    sc:description "The speckle package currently contains functions to analyse differences in cell type proportions in single cell RNA-seq data, and to classify cells as male or female. As our research into specialised analyses of single cell data continues we anticipate that the package will be updated with new functions." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_3659,
+        edam:operation_3935 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "speckle" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/Oshlack/speckle" .
+
 <https://bio.tools/speckle-noise-reduction-ultrasound-images> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -448863,7 +476135,7 @@ The SpeciesPrimer pipeline is intended to help researchers finding specific prim
     biotools:primaryContact "Ashish Meshram" .
 
 <https://bio.tools/specl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -448886,14 +476158,12 @@ The SpeciesPrimer pipeline is intended to help researchers finding specific prim
 
 <https://bio.tools/speclust> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ] ;
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:name "Mass spectrometry data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2979" ;
-            sc:name "Peptide property" ;
-            sc:sameAs "http://edamontology.org/data_2979" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2979" ;
+            sc:name "Peptide property" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154 ;
     sc:citation <https://doi.org/10.1021/pr050354v> ;
@@ -448908,8 +476178,28 @@ The SpeciesPrimer pipeline is intended to help researchers finding specific prim
     sc:softwareVersion "1" ;
     sc:url "http://co.bmc.lu.se/speclust/" .
 
+<https://bio.tools/specollate> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0121,
+        edam:topic_0154,
+        edam:topic_3474,
+        edam:topic_3520 ;
+    sc:citation <https://doi.org/10.1371/JOURNAL.PONE.0259349>,
+        "pmcid:PMC8555789",
+        "pubmed:34714871" ;
+    sc:description "Deep cross-modal similarity network for mass spectrometry data based peptide deductions." ;
+    sc:featureList edam:operation_2421,
+        edam:operation_3631,
+        edam:operation_3860 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "SpeCollate" ;
+    sc:operatingSystem "Linux" ;
+    sc:url "https://deepspecs.github.io/" .
+
 <https://bio.tools/specond> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -448929,7 +476219,7 @@ The SpeciesPrimer pipeline is intended to help researchers finding specific prim
     biotools:primaryContact "Florence Cavalli" .
 
 <https://bio.tools/specs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_2814,
         edam:topic_3170,
@@ -448957,7 +476247,7 @@ A non-parameteric method to identify tissue-specific molecular features with une
     sc:url "http://specs.cmgg.be" .
 
 <https://bio.tools/specseg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3304,
         edam:topic_3382,
@@ -448973,7 +476263,7 @@ This Github contains 'SpecSeg', an open source calcium imaging processing toolbo
     sc:url "https://github.com/Leveltlab/SpectralSegmentation" .
 
 <https://bio.tools/spectacle> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0625,
         edam:topic_2229,
@@ -448993,14 +476283,13 @@ Spectacle and cellcuratoR were developed by an interdisciplinary team within the
 
 <https://bio.tools/specter> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3483" ;
-            sc:name "Spectrum" ;
-            sc:sameAs "http://edamontology.org/data_3483" ] ;
+            sc:additionalType "http://edamontology.org/data_3483" ;
+            sc:name "Spectrum" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0078,
@@ -449017,7 +476306,7 @@ Spectacle and cellcuratoR were developed by an interdisciplinary team within the
     biotools:primaryContact "Ryan Peckner" .
 
 <https://bio.tools/specter-rna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_2229,
         edam:topic_3170,
@@ -449035,7 +476324,7 @@ Specter is a novel computational method for clustering large-scale single cell R
     sc:url "https://github.com/canzarlab/Specter" .
 
 <https://bio.tools/spectracular> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3168,
         edam:topic_3934 ;
@@ -449046,7 +476335,7 @@ Specter is a novel computational method for clustering large-scale single cell R
     biotools:primaryContact <https://orcid.org/0000-0002-6725-7850> .
 
 <https://bio.tools/spectraltad> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0621,
         edam:topic_3940 ;
@@ -449066,7 +476355,7 @@ SpectralTAD is an R package designed to identify Topologically Associated Domain
     sc:url "http://bioconductor.org/packages/SpectralTAD/" .
 
 <https://bio.tools/spectraltdf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2533,
         edam:topic_3053,
@@ -449082,7 +476371,7 @@ SpectralTAD is an R package designed to identify Topologically Associated Domain
     sc:url "http://sourceforge.net/projects/spectraltdf/" .
 
 <https://bio.tools/spectrast> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -449098,7 +476387,7 @@ SpectralTAD is an R package designed to identify Topologically Associated Domain
     sc:url "http://www.peptideatlas.org/spectrast/" .
 
 <https://bio.tools/spectre> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Script" ;
     sc:applicationSubCategory edam:topic_0108,
@@ -449118,7 +476407,7 @@ SpectralTAD is an R package designed to identify Topologically Associated Domain
     sc:url "https://github.com/mills-lab/spectre" .
 
 <https://bio.tools/spectre-cytometry> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3382,
         edam:topic_3934 ;
@@ -449139,7 +476428,7 @@ A computational toolkit in R for the integration, exploration, and analysis of h
     sc:url "https://github.com/immunedynamics/spectre" .
 
 <https://bio.tools/spectre-phylogeny> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3293,
@@ -449157,7 +476446,7 @@ A computational toolkit in R for the integration, exploration, and analysis of h
     biotools:primaryContact "Sarah Bastkowski" .
 
 <https://bio.tools/spectrogene> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0622,
@@ -449172,7 +476461,7 @@ A computational toolkit in R for the integration, exploration, and analysis of h
     sc:url "https://github.com/fenderglass/SpectroGene" .
 
 <https://bio.tools/spectrum-clustering> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3474,
         edam:topic_3577 ;
@@ -449188,14 +476477,14 @@ A computational toolkit in R for the integration, exploration, and analysis of h
 
 <https://bio.tools/spectrum_look> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3654" ;
+            sc:name "Mass spectrometry spectra" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3591" ;
+            sc:name "Mass spectrometry spectra" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3382,
@@ -449207,7 +476496,7 @@ A computational toolkit in R for the integration, exploration, and analysis of h
     sc:url "http://omics.pnl.gov/software/spectrumlook" .
 
 <https://bio.tools/spectrum_similarity> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121 ;
     sc:citation <https://doi.org/10.1021/acs.jproteome.6b00140> ;
@@ -449225,7 +476514,7 @@ A computational toolkit in R for the integration, exploration, and analysis of h
     sc:url "https://github.com/compomics/spectrum_similarity" .
 
 <https://bio.tools/spectrum_utils> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3172,
         edam:topic_3520 ;
@@ -449238,8 +476527,27 @@ A computational toolkit in R for the integration, exploration, and analysis of h
     sc:name "spectrum_utils" ;
     sc:url "https://github.com/bittremieux/spectrum_utils" .
 
+<https://bio.tools/spede-sampler> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0084,
+        edam:topic_0610,
+        edam:topic_0637,
+        edam:topic_0780,
+        edam:topic_3500 ;
+    sc:citation <https://doi.org/10.1111/1755-0998.13591>,
+        "pubmed:35094502" ;
+    sc:description "An R Shiny application to assess how methodological choices and taxon sampling can affect Generalized Mixed Yule Coalescent output and interpretation." ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "SPEDE-sampler" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/clarkevansteenderen/spede_sampler_R" .
+
 <https://bio.tools/spedre> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0176,
@@ -449261,7 +476569,7 @@ A computational toolkit in R for the integration, exploration, and analysis of h
     biotools:primaryContact "SPEDRE Support" .
 
 <https://bio.tools/speed> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0204,
@@ -449282,8 +476590,35 @@ A computational toolkit in R for the integration, exploration, and analysis of h
     sc:url "http://speed.sys-bio.net/" ;
     biotools:primaryContact "Nils Blüthgen" .
 
+<https://bio.tools/speedseq> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Nucleic acid sequence" ] ;
+    bsc:output [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_0955" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Data index" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Workbench" ;
+    sc:applicationSubCategory edam:topic_0622 ;
+    sc:citation <https://doi.org/10.1038/nmeth.3505>,
+        "pmcid:PMC4589466",
+        "pubmed:26258291" ;
+    sc:description "A flexible framework for rapid genome analysis and interpretation" ;
+    sc:featureList edam:operation_0310,
+        edam:operation_3227 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "SpeedSeq" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/hall-lab/speedseq" .
+
 <https://bio.tools/speedy-inverse-radon-transform> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -449299,7 +476634,7 @@ A computational toolkit in R for the integration, exploration, and analysis of h
     biotools:primaryContact "Jeff Orchard" .
 
 <https://bio.tools/speedyga> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3315,
         edam:topic_3520 ;
@@ -449313,8 +476648,29 @@ A computational toolkit in R for the integration, exploration, and analysis of h
     sc:url "https://www.mathworks.com/matlabcentral/fileexchange/15164-speedyga-a-fast-simple-genetic-algorithm" ;
     biotools:primaryContact "Keki Burjorjee" .
 
+<https://bio.tools/speedygenesxl> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0196,
+        edam:topic_0632,
+        edam:topic_0749,
+        edam:topic_3299,
+        edam:topic_3895 ;
+    sc:citation <https://doi.org/10.1007/978-1-0716-2152-3_5>,
+        "pubmed:35727444" ;
+    sc:description "An Automated, High-Throughput Platform for the Preparation of Bespoke Ultralarge Variant Libraries for Directed Evolution." ;
+    sc:featureList edam:operation_0310,
+        edam:operation_3237 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "SpeedyGenesXL" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/neilswainston/SpeedyGenesXL" .
+
 <https://bio.tools/speer-server> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -449334,7 +476690,7 @@ A computational toolkit in R for the integration, exploration, and analysis of h
     biotools:primaryContact "Saikat Chakrabarti" .
 
 <https://bio.tools/spell> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btm403> ;
@@ -449351,14 +476707,14 @@ A computational toolkit in R for the integration, exploration, and analysis of h
 
 <https://bio.tools/spem> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Gene expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ] ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Gene expression data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:encodingFormat "http://edamontology.org/format_2013" ;
+            sc:name "Pathway or network" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0602 ;
@@ -449377,7 +476733,7 @@ A computational toolkit in R for the integration, exploration, and analysis of h
     biotools:primaryContact "Xinyi YANG" .
 
 <https://bio.tools/spencer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
@@ -449398,7 +476754,7 @@ A computational toolkit in R for the integration, exploration, and analysis of h
     sc:url "http://spencer.renlab.org" .
 
 <https://bio.tools/speplip> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0154,
@@ -449413,8 +476769,31 @@ A computational toolkit in R for the integration, exploration, and analysis of h
     sc:softwareHelp <http://gpcr.biocomp.unibo.it/oldpredictors/spep/info/> ;
     sc:url "http://gpcr.biocomp.unibo.it/cgi/predictors/spep/pred_spepcgi.cgi" .
 
+<https://bio.tools/speq> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0121,
+        edam:topic_0154,
+        edam:topic_0601,
+        edam:topic_3474,
+        edam:topic_3520 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAB874>,
+        "pmcid:PMC8896601",
+        "pubmed:34978568" ;
+    sc:description "Quality Assessment of Peptide Tandem Mass Spectra with Deep Learning." ;
+    sc:featureList edam:operation_3631,
+        edam:operation_3767,
+        edam:operation_3860 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "SPEQ" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://github.com/sor8sh/SPEQ" .
+
 <https://bio.tools/spex2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0089,
@@ -449433,7 +476812,7 @@ A computational toolkit in R for the integration, exploration, and analysis of h
     sc:url "http://www.sailing.cs.cmu.edu/main/?page_id=511" .
 
 <https://bio.tools/spfa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
         edam:topic_0634,
@@ -449452,7 +476831,7 @@ Signaling pathway analysis methods are commonly used to explain biological behav
     sc:url "https://github.com/ZhenshenBao/SPFA" .
 
 <https://bio.tools/spgpcw> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2269,
         edam:topic_3411 ;
@@ -449468,7 +476847,7 @@ This package implements a hierarchical Bayesian logistic regression analysis to
     sc:url "https://github.com/warrenjl/SpGPCW" .
 
 <https://bio.tools/sphere-assay-image-size-analysis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -449486,7 +476865,7 @@ This package implements a hierarchical Bayesian logistic regression analysis to
     biotools:primaryContact "Patrick Granton" .
 
 <https://bio.tools/spherecon> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0130,
         edam:topic_0154,
         edam:topic_0166,
@@ -449507,7 +476886,7 @@ spherecon.py -i /Path/To/Input/File [-o /Path/To/Output/File] [-c chain] [-r res
     sc:url "https://github.com/kalininalab/spherecon" .
 
 <https://bio.tools/spheremorph> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0605,
         edam:topic_3474,
         edam:topic_3520 ;
@@ -449520,7 +476899,7 @@ Non-rigid cortical registration is an important and challenging task due to the
     sc:url "https://github.com/voxelmorph/spheremorph" .
 
 <https://bio.tools/spherical-k-means-algorithm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0203,
@@ -449539,7 +476918,7 @@ Non-rigid cortical registration is an important and challenging task due to the
     biotools:primaryContact "Xuan Vinh Nguyen" .
 
 <https://bio.tools/spi-hub> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0605,
         edam:topic_3068,
         edam:topic_3305,
@@ -449556,7 +476935,7 @@ Advances in the health sciences rely on sharing research and data through public
     sc:url "https://spi-hub.app.vumc.org/tutorials" .
 
 <https://bio.tools/spia> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -449576,7 +476955,7 @@ Advances in the health sciences rely on sharing research and data through public
     biotools:primaryContact "Adi Laurentiu Tarca" .
 
 <https://bio.tools/spiat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2229,
         edam:topic_3308,
@@ -449593,8 +476972,32 @@ R package for the analysis of OPAL multiplex immunohistochemistry images.""" ;
     sc:name "SPIAT" ;
     sc:url "https://github.com/cancer-evolution/SPIAT" .
 
+<https://bio.tools/spica> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0625,
+        edam:topic_2229,
+        edam:topic_3170,
+        edam:topic_3308 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAB1055>,
+        "pmcid:PMC8728228",
+        "pubmed:34747477" ;
+    sc:description "The Swiss Portal for Immune Cell Analysis (SPICA) is a web resource dedicated to the exploration and analysis of single-cell RNA-seq data of immune cells." ;
+    sc:featureList edam:operation_2421,
+        edam:operation_2422,
+        edam:operation_3223 ;
+    sc:isAccessibleForFree true ;
+    sc:name "SPICA" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://spica.unil.ch/home/api>,
+        <https://spica.unil.ch/tutorials> ;
+    sc:url "https://spica.unil.ch" .
+
 <https://bio.tools/spice> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_2229,
@@ -449610,7 +477013,7 @@ R package for the analysis of OPAL multiplex immunohistochemistry images.""" ;
     biotools:primaryContact "Joshua Nozzi" .
 
 <https://bio.tools/spice-classify> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -449628,7 +477031,7 @@ R package for the analysis of OPAL multiplex immunohistochemistry images.""" ;
     biotools:primaryContact "B. A. Vandenberg" .
 
 <https://bio.tools/spices> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_2258,
@@ -449644,7 +477047,7 @@ R package for the analysis of OPAL multiplex immunohistochemistry images.""" ;
     biotools:primaryContact "Achim Zielesny" .
 
 <https://bio.tools/spicker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_2814 ;
@@ -449658,7 +477061,7 @@ R package for the analysis of OPAL multiplex immunohistochemistry images.""" ;
     sc:url "http://zhanglab.ccmb.med.umich.edu/SPICKER/" .
 
 <https://bio.tools/spicyr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0634,
@@ -449680,7 +477083,7 @@ R package for the analysis of OPAL multiplex immunohistochemistry images.""" ;
     sc:url "http://bioconductor.org/packages/release/bioc/html/spicyR.html" .
 
 <https://bio.tools/spiddor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0202,
         edam:topic_0602,
@@ -449697,13 +477100,17 @@ R package for the analysis of OPAL multiplex immunohistochemistry images.""" ;
         "Iñaki F. Trocóniz" .
 
 <https://bio.tools/spider> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0611,
         edam:topic_1317,
         edam:topic_2269 ;
-    sc:citation <https://doi.org/10.1006/jsbi.1996.0030> ;
+    sc:citation <https://doi.org/10.1006/jsbi.1996.0030>,
+        <https://doi.org/10.1038/nprot.2008.156>,
+        "pmcid:PMC2737740",
+        "pubmed:19180078",
+        "pubmed:8742743" ;
     sc:description "Image processing system for electron microscopy." ;
     sc:featureList edam:operation_0297,
         edam:operation_2238,
@@ -449720,7 +477127,7 @@ R package for the analysis of OPAL multiplex immunohistochemistry images.""" ;
     biotools:primaryContact "ArDean Leith" .
 
 <https://bio.tools/spider-barcoding> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3053,
@@ -449736,7 +477143,7 @@ R package for the analysis of OPAL multiplex immunohistochemistry images.""" ;
     sc:url "http://spider.r-forge.r-project.org/SpiderWebSite/spider.html" .
 
 <https://bio.tools/spiderlearner> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2269,
@@ -449758,34 +477165,34 @@ R package for the analysis of OPAL multiplex immunohistochemistry images.""" ;
 
 <https://bio.tools/spidermass> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0990" ;
-            sc:name "Compound name" ;
-            sc:sameAs "http://edamontology.org/data_0990" ],
+            sc:additionalType "http://edamontology.org/data_2093" ;
+            sc:encodingFormat "http://edamontology.org/format_3326" ;
+            sc:name "Data reference" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ],
+            sc:additionalType "http://edamontology.org/data_0990" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Compound name" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2093" ;
-            sc:name "Data reference" ;
-            sc:sameAs "http://edamontology.org/data_2093" ],
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Mass spectrometry data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1173" ;
-            sc:name "ChemSpider ID" ;
-            sc:sameAs "http://edamontology.org/data_1173" ] ;
+            sc:additionalType "http://edamontology.org/data_1173" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "ChemSpider ID" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1086" ;
-            sc:name "Compound identifier" ;
-            sc:sameAs "http://edamontology.org/data_1086" ],
+            sc:additionalType "http://edamontology.org/data_2093" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Data reference" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0990" ;
-            sc:name "Compound name" ;
-            sc:sameAs "http://edamontology.org/data_0990" ],
+            sc:additionalType "http://edamontology.org/data_0990" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Compound name" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2093" ;
-            sc:name "Data reference" ;
-            sc:sameAs "http://edamontology.org/data_2093" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1086" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Compound identifier" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_3172 ;
@@ -449802,7 +477209,7 @@ R package for the analysis of OPAL multiplex immunohistochemistry images.""" ;
     sc:url "http://lababi.bioprocess.org/index.php/lababi-software/80-spidermass" .
 
 <https://bio.tools/spidermir> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0204,
@@ -449822,7 +477229,7 @@ R package for the analysis of OPAL multiplex immunohistochemistry images.""" ;
     biotools:primaryContact "Claudia Cava" .
 
 <https://bio.tools/spiderseqr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3169,
         edam:topic_3170,
@@ -449840,7 +477247,7 @@ SpiderSeqR accelerates and simplifies genomic research by offering a new framewo
     sc:url "https://github.com/ss-lab-cancerunit/SpiderSeqR" .
 
 <https://bio.tools/spikchip> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0601,
         edam:topic_3169,
@@ -449863,7 +477270,7 @@ SpiderSeqR accelerates and simplifies genomic research by offering a new framewo
     sc:url "https://github.com/eblancoga/spikChIP" .
 
 <https://bio.tools/spike> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0219,
@@ -449885,7 +477292,7 @@ SpiderSeqR accelerates and simplifies genomic research by offering a new framewo
     biotools:primaryContact "SPIKE Support" .
 
 <https://bio.tools/spikeforest> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0632,
         edam:topic_0769,
         edam:topic_3304 ;
@@ -449900,7 +477307,7 @@ Spike sorting is a crucial but time-intensive step in electrophysiological studi
     sc:url "https://spikeforest.flatironinstitute.org" .
 
 <https://bio.tools/spikeli> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3518,
@@ -449919,7 +477326,7 @@ Spike sorting is a crucial but time-intensive step in electrophysiological studi
     biotools:primaryContact "Enrico Carlon" .
 
 <https://bio.tools/spikepro> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0130,
         edam:topic_0199,
@@ -449938,7 +477345,7 @@ Spike sorting is a crucial but time-intensive step in electrophysiological studi
         <https://orcid.org/0000-0003-2916-022X> .
 
 <https://bio.tools/spiky> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0654,
@@ -449956,10 +477363,10 @@ Spike sorting is a crucial but time-intensive step in electrophysiological studi
 
 <https://bio.tools/spin> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_2200" ;
+            sc:name "Sequence alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3299 ;
     sc:citation <https://doi.org/10.1186/1748-7188-7-33>,
@@ -449977,7 +477384,7 @@ Spike sorting is a crucial but time-intensive step in electrophysiological studi
         "Anna Kedzierska" .
 
 <https://bio.tools/spind-tc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0632,
         edam:topic_2269,
         edam:topic_2828 ;
@@ -449998,7 +477405,7 @@ Next generation of Sparse Pattern INDexing method.""" ;
     sc:url "https://github.com/lixx11/SPIND-TC" .
 
 <https://bio.tools/spindel_workbench> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0610,
@@ -450024,14 +477431,14 @@ Next generation of Sparse Pattern INDexing method.""" ;
 
 <https://bio.tools/spindlep> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Protein features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0140 ;
@@ -450049,8 +477456,55 @@ Next generation of Sparse Pattern INDexing method.""" ;
     sc:softwareVersion "4.1" ;
     sc:url "http://cbs.dtu.dk/services/SpindleP/" .
 
+<https://bio.tools/spinnaker> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0602,
+        edam:topic_0659,
+        edam:topic_2640,
+        edam:topic_3315,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.1186/S12859-022-04695-X>,
+        "pmcid:PMC9073480",
+        "pubmed:35524174" ;
+    sc:description "An R-based tool to highlight key RNA interactions in complex biological networks." ;
+    sc:featureList edam:operation_0463,
+        edam:operation_2426,
+        edam:operation_3792 ;
+    sc:isAccessibleForFree true ;
+    sc:license "AGPL-3.0" ;
+    sc:name "SPINNAKER" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/sportingCode/SPINNAKER.git" .
+
+<https://bio.tools/spinspj> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0593,
+        edam:topic_3172,
+        edam:topic_3372,
+        edam:topic_3444,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1186/S12859-021-04492-Y>,
+        "pmcid:PMC8650269",
+        "pubmed:34875998" ;
+    sc:description "A novel NMR scripting system to implement artificial intelligence and advanced applications." ;
+    sc:featureList edam:operation_2939,
+        edam:operation_3891,
+        edam:operation_3960 ;
+    sc:isAccessibleForFree true ;
+    sc:license "EPL-1.0" ;
+    sc:name "SpinSPJ" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <http://www.spinstudioj.net/spinspj/doc/Script%20programming.pdf> ;
+    sc:url "http://www.spinstudioj.net/spinspj" .
+
 <https://bio.tools/spiral_genetics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0102,
@@ -450072,7 +477526,7 @@ Next generation of Sparse Pattern INDexing method.""" ;
     biotools:primaryContact "Contact Form" .
 
 <https://bio.tools/spiralize> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0091 ;
     sc:description "Visualize data on spirals." ;
@@ -450083,18 +477537,16 @@ Next generation of Sparse Pattern INDexing method.""" ;
 
 <https://bio.tools/spirpro> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2343" ;
-            sc:name "Pathway ID (KEGG)" ;
-            sc:sameAs "http://edamontology.org/data_2343" ],
+            sc:additionalType "http://edamontology.org/data_2099" ;
+            sc:name "Name" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2099" ;
-            sc:name "Name" ;
-            sc:sameAs "http://edamontology.org/data_2099" ] ;
+            sc:additionalType "http://edamontology.org/data_2343" ;
+            sc:name "Pathway ID (KEGG)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Pathway or network" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -450116,7 +477568,7 @@ Next generation of Sparse Pattern INDexing method.""" ;
     biotools:primaryContact "Jittisak Senachak" .
 
 <https://bio.tools/spiseme> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3304,
         edam:topic_3318,
@@ -450135,14 +477587,14 @@ The Spike Sequence mime (SpiSeMe) package provides C++, Matlab and Python functi
 
 <https://bio.tools/spktools> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3110" ;
-            sc:name "Raw microarray data" ;
-            sc:sameAs "http://edamontology.org/data_3110" ] ;
+            sc:additionalType "http://edamontology.org/data_3110" ;
+            sc:encodingFormat "http://edamontology.org/format_1637" ;
+            sc:name "Raw microarray data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3518 ;
@@ -450160,7 +477612,7 @@ The Spike Sequence mime (SpiSeMe) package provides C++, Matlab and Python functi
     biotools:primaryContact "Matthew N McCall" .
 
 <https://bio.tools/spladder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0099,
@@ -450178,7 +477630,7 @@ The Spike Sequence mime (SpiSeMe) package provides C++, Matlab and Python functi
     sc:url "http://raetschlab.org/suppl/spladder" .
 
 <https://bio.tools/splatter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3168,
@@ -450200,7 +477652,7 @@ The Spike Sequence mime (SpiSeMe) package provides C++, Matlab and Python functi
     biotools:primaryContact "Luke Zappia" .
 
 <https://bio.tools/splice-q> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_2640,
         edam:topic_3170,
@@ -450222,7 +477674,7 @@ Sensitive to the overlap of genomic elements.""" ;
     sc:url "https://github.com/vrmelo/SPLICE-q" .
 
 <https://bio.tools/splice2deep> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0621,
         edam:topic_3320,
@@ -450244,14 +477696,13 @@ The accurate identification of the exon and intron boundaries is critical for th
 
 <https://bio.tools/spliceaid> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1009" ;
-            sc:name "Protein name" ;
-            sc:sameAs "http://edamontology.org/data_1009" ] ;
+            sc:additionalType "http://edamontology.org/data_1009" ;
+            sc:name "Protein name" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0896" ;
-            sc:name "Protein report" ;
-            sc:sameAs "http://edamontology.org/data_0896" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0896" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Protein report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0114,
@@ -450270,7 +477721,7 @@ The accurate identification of the exon and intron boundaries is critical for th
     biotools:primaryContact <https://orcid.org/0000-0003-1850-2482> .
 
 <https://bio.tools/spliceaid-f> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_3047 ;
     sc:citation <https://doi.org/10.1093/nar/gks997> ;
@@ -450287,8 +477738,35 @@ The accurate identification of the exon and intron boundaries is critical for th
     sc:url "http://srv00.recas.ba.infn.it/SpliceAidF/" ;
     biotools:primaryContact "Graziano Pesole" .
 
+<https://bio.tools/spliceator> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:name "Nucleic acid sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0621,
+        edam:topic_0780,
+        edam:topic_3170,
+        edam:topic_3320,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1186/S12859-021-04471-3>,
+        "pmcid:PMC8609763",
+        "pubmed:34814826" ;
+    sc:description "SPLICEATOR is an eukaryotic splice sites prediction program. It is based on convolutional neural network architecture. A model has been built for each type of splice site (Donor and Acceptor)." ;
+    sc:featureList edam:operation_0362,
+        edam:operation_0433,
+        edam:operation_0446 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "Spliceator" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://www.lbgi.fr/spliceator/" .
+
 <https://bio.tools/splicedb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0121,
@@ -450305,7 +477783,7 @@ The accurate identification of the exon and intron boundaries is critical for th
     sc:url "http://proteomics.ucsd.edu/software-tools/splicedb-splice-graph-proteomics-tools/" .
 
 <https://bio.tools/splicedetector> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_3170,
@@ -450319,7 +477797,7 @@ The accurate identification of the exon and intron boundaries is critical for th
     biotools:primaryContact "Esmaeil Ebrahimie" .
 
 <https://bio.tools/splicedisease_db> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0602,
@@ -450341,7 +477819,7 @@ The accurate identification of the exon and intron boundaries is critical for th
     biotools:primaryContact "Juan Wang" .
 
 <https://bio.tools/splicegear> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3320,
@@ -450360,7 +477838,7 @@ The accurate identification of the exon and intron boundaries is critical for th
     biotools:primaryContact "Laurent Gautier" .
 
 <https://bio.tools/splicegrapher> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3320 ;
     sc:citation <https://doi.org/10.1186/gb-2012-13-1-r4> ;
@@ -450374,7 +477852,7 @@ The accurate identification of the exon and intron boundaries is critical for th
     biotools:primaryContact "Asa Ben-Hur" .
 
 <https://bio.tools/splicejumper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3320,
@@ -450389,14 +477867,13 @@ The accurate identification of the exon and intron boundaries is critical for th
 
 <https://bio.tools/splicemachine> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ] ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Nucleic acid sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2070" ;
-            sc:name "Sequence motif (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_2070" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2070" ;
+            sc:name "Sequence motif (nucleic acid)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3511 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/bti166> ;
@@ -450412,7 +477889,7 @@ The accurate identification of the exon and intron boundaries is critical for th
     sc:url "http://bioinformatics.psb.ugent.be/software/details/SpliceMachine" .
 
 <https://bio.tools/splicemap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3170 ;
     sc:citation "pubmed:20371516" ;
@@ -450426,7 +477903,7 @@ The accurate identification of the exon and intron boundaries is critical for th
     biotools:primaryContact "Kin Fai Au" .
 
 <https://bio.tools/spliceplot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3320 ;
     sc:citation "pubmed:24363378" ;
@@ -450441,7 +477918,7 @@ The accurate identification of the exon and intron boundaries is critical for th
     biotools:primaryContact "Eric Wu" .
 
 <https://bio.tools/spliceport> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_2815,
@@ -450463,7 +477940,7 @@ The accurate identification of the exon and intron boundaries is critical for th
     biotools:primaryContact "spliceport Support" .
 
 <https://bio.tools/splicer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3170,
@@ -450483,7 +477960,7 @@ The accurate identification of the exon and intron boundaries is critical for th
         "Kristoffer Vitting-Seerup" .
 
 <https://bio.tools/splicesites> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -450505,7 +477982,7 @@ The accurate identification of the exon and intron boundaries is critical for th
     biotools:primaryContact "Wolfgang Kaisers" .
 
 <https://bio.tools/splicetrap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3320 ;
@@ -450519,7 +477996,7 @@ The accurate identification of the exon and intron boundaries is critical for th
     biotools:primaryContact "SpliceTrap Support" .
 
 <https://bio.tools/splicing_express> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Suite" ;
     sc:applicationSubCategory edam:topic_0654,
@@ -450536,7 +478013,7 @@ The accurate identification of the exon and intron boundaries is critical for th
     sc:url "http://www.bioinformatics-brazil.org/splicingexpress" .
 
 <https://bio.tools/splicingcompass> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_3168,
@@ -450553,7 +478030,7 @@ The accurate identification of the exon and intron boundaries is critical for th
     sc:url "http://www.ichip.de/software/SplicingCompass.html" .
 
 <https://bio.tools/splicingfactory> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3308,
@@ -450577,14 +478054,14 @@ The accurate identification of the exon and intron boundaries is critical for th
 
 <https://bio.tools/splicinggraphs> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3134" ;
-            sc:name "Gene transcript report" ;
-            sc:sameAs "http://edamontology.org/data_3134" ] ;
+            sc:additionalType "http://edamontology.org/data_3134" ;
+            sc:encodingFormat "http://edamontology.org/format_3621" ;
+            sc:name "Gene transcript report" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Pathway or network" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3170,
@@ -450604,7 +478081,7 @@ The accurate identification of the exon and intron boundaries is critical for th
     biotools:primaryContact "H. Pagès" .
 
 <https://bio.tools/splicingtypesanno> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_3170,
@@ -450620,7 +478097,7 @@ The accurate identification of the exon and intron boundaries is critical for th
     sc:url "https://sourceforge.net/projects/splicingtypes/" .
 
 <https://bio.tools/splicingviewer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3170 ;
@@ -450640,7 +478117,7 @@ The accurate identification of the exon and intron boundaries is critical for th
         "SplicingViewer team" .
 
 <https://bio.tools/splign> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -450663,7 +478140,7 @@ The accurate identification of the exon and intron boundaries is critical for th
     biotools:primaryContact "Yuri Kapustin" .
 
 <https://bio.tools/splinetimer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -450683,7 +478160,7 @@ The accurate identification of the exon and intron boundaries is critical for th
     biotools:primaryContact "Herbert Braselmann" .
 
 <https://bio.tools/splink> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0749,
         edam:topic_3517 ;
@@ -450698,7 +478175,7 @@ Genome-wide association studies (GWAS) have been widely used to unravel connecti
     sc:url "https://exbio.wzw.tum.de/splink" .
 
 <https://bio.tools/splinter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -450721,7 +478198,7 @@ Genome-wide association studies (GWAS) have been widely used to unravel connecti
     biotools:primaryContact "Diana Low" .
 
 <https://bio.tools/split-GAL4> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3304,
@@ -450743,7 +478220,7 @@ Genome-wide association studies (GWAS) have been widely used to unravel connecti
         <https://orcid.org/0000-0002-0587-9355> .
 
 <https://bio.tools/split-fish> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0621,
         edam:topic_0632,
@@ -450762,16 +478239,35 @@ Scripts and data used for the manuscript figures can be found in the splitFISH_m
     sc:name "split-FISH" ;
     sc:url "https://github.com/khchenLab/split-fish" .
 
+<https://bio.tools/splitavg> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_3063,
+        edam:topic_3384,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1109/JBHI.2022.3185956>,
+        "pubmed:35749336" ;
+    sc:description "A heterogeneity-aware federated deep learning method for medical imaging." ;
+    sc:featureList edam:operation_3359,
+        edam:operation_3659 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "SplitAVG" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/zm17943/SplitAVG" .
+
 <https://bio.tools/splitdist> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0872" ;
-            sc:name "Phylogenetic tree" ;
-            sc:sameAs "http://edamontology.org/data_0872" ] ;
+            sc:additionalType "http://edamontology.org/data_0872" ;
+            sc:encodingFormat "http://edamontology.org/format_1910" ;
+            sc:name "Phylogenetic tree" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0872" ;
-            sc:name "Phylogenetic tree" ;
-            sc:sameAs "http://edamontology.org/data_0872" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0872" ;
+            sc:encodingFormat "http://edamontology.org/format_1910" ;
+            sc:name "Phylogenetic tree" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0084 ;
     sc:description "Calculate the number of splits (edges) that differs for two trees." ;
@@ -450785,7 +478281,7 @@ Scripts and data used for the manuscript figures can be found in the splitFISH_m
     biotools:primaryContact "Thomas Mailund" .
 
 <https://bio.tools/splitmem> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0654,
@@ -450799,7 +478295,7 @@ Scripts and data used for the manuscript figures can be found in the splitFISH_m
     sc:url "http://sourceforge.net/projects/splitmem/" .
 
 <https://bio.tools/splitpocket> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0166,
@@ -450819,7 +478315,7 @@ Scripts and data used for the manuscript figures can be found in the splitFISH_m
     biotools:primaryContact "Yan Y. Tseng" .
 
 <https://bio.tools/splitseek> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3170,
@@ -450837,14 +478333,12 @@ Scripts and data used for the manuscript figures can be found in the splitFISH_m
 
 <https://bio.tools/splitsource> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -450875,14 +478369,12 @@ Scripts and data used for the manuscript figures can be found in the splitFISH_m
 
 <https://bio.tools/splitter> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -450912,7 +478404,7 @@ Scripts and data used for the manuscript figures can be found in the splitFISH_m
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/splitter.html" .
 
 <https://bio.tools/splots> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -450931,7 +478423,7 @@ Scripts and data used for the manuscript figures can be found in the splitFISH_m
     biotools:primaryContact "Wolfgang Huber" .
 
 <https://bio.tools/spm-pathway> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0602,
         edam:topic_2640,
@@ -450952,7 +478444,7 @@ Our software SPM consists of three separate parts: intermediate file generation
     sc:url "https://github.com/Dalton386/SPM" .
 
 <https://bio.tools/spmm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_0781,
@@ -450968,7 +478460,7 @@ Our software SPM consists of three separate parts: intermediate file generation
     sc:url "http://p512.usc.edu/" .
 
 <https://bio.tools/spnconverter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2259,
@@ -450985,8 +478477,27 @@ Our software SPM consists of three separate parts: intermediate file generation
     sc:softwareVersion "1.0" ;
     sc:url "http://www.picb.ac.cn/ClinicalGenomicNTW/SPNConverter.html" .
 
+<https://bio.tools/spoa> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1193" ;
+            sc:encodingFormat "http://edamontology.org/format_3987" ;
+            sc:name "Tool name (FASTA)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0622 ;
+    sc:citation <https://doi.org/10.48550/arXiv.1611.06115> ;
+    sc:description "SIMD partial order alignment tool/library. Spoa (SIMD POA) is a c++ implementation of the partial order alignment (POA) algorithm" ;
+    sc:featureList edam:operation_0292 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "Spoa" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/rvaser/spoa" .
+
 <https://bio.tools/spoc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_2269 ;
     sc:citation <https://doi.org/10.1101/2020.03.13.990705> ;
@@ -451000,7 +478511,7 @@ SPOC, short for Statistical Processing of cryo-EM maps, is a software package wh
     sc:url "https://github.com/MaximilianBeckers/SPOC" .
 
 <https://bio.tools/spollineages> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0194,
         edam:topic_0625,
         edam:topic_0637,
@@ -451020,7 +478531,7 @@ SpolLineages is a software tool mainly written in Java allowing to predict Mycob
     sc:url "https://github.com/dcouvin/SpolLineages" .
 
 <https://bio.tools/sponge> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0204,
@@ -451040,7 +478551,7 @@ SpolLineages is a software tool mainly written in Java allowing to predict Mycob
     biotools:primaryContact "Markus List" .
 
 <https://bio.tools/spongescan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0099,
@@ -451056,8 +478567,33 @@ SpolLineages is a software tool mainly written in Java allowing to predict Mycob
     sc:softwareHelp <http://spongescan.readthedocs.io/en/latest/Home/> ;
     sc:url "http://spongescan.rc.ufl.edu/" .
 
+<https://bio.tools/sporos> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0659,
+        edam:topic_0769,
+        edam:topic_3170,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.1371/JOURNAL.PCBI.1010022>,
+        "pmcid:PMC9004739",
+        "pubmed:35358200" ;
+    sc:description "The SPOROS pipeline is a read-based sequence analysis pipeline for studying 6mer Seed Toxicity in mouse and human RNA-seq data." ;
+    sc:featureList edam:operation_0463,
+        edam:operation_3192,
+        edam:operation_3196,
+        edam:operation_3792,
+        edam:operation_3933 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "SPOROS" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/ebartom/SPOROS" .
+
 <https://bio.tools/spot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2885,
         edam:topic_3053,
@@ -451074,7 +478610,7 @@ SpolLineages is a software tool mainly written in Java allowing to predict Mycob
     biotools:primaryContact "SPOT Support" .
 
 <https://bio.tools/spot-1d-single> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0736,
@@ -451093,7 +478629,7 @@ SpolLineages is a software tool mainly written in Java allowing to predict Mycob
         <https://orcid.org/0000-0003-4974-5188> .
 
 <https://bio.tools/spot-contact-single> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0102,
@@ -451113,8 +478649,35 @@ SpolLineages is a software tool mainly written in Java allowing to predict Mycob
     sc:softwareHelp <https://github.com/jas-preet/SPOT-Contact-Single> ;
     sc:url "https://sparks-lab.org/server/spot-contact-single" .
 
+<https://bio.tools/spot-disorder> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Web application" ;
+    sc:citation <https://doi.org/10.1093/bioinformatics/btw678>,
+        "pubmed:28011771" ;
+    sc:description "SPOT-Disorder is a method used for predicting disordered regions in proteins. Initial studies indicate that the method is more accurate in predicting functional sites in disordered regions." ;
+    sc:isAccessibleForFree true ;
+    sc:name "SPOT-Disorder" ;
+    sc:operatingSystem "Linux" ;
+    sc:softwareVersion "v1.0" ;
+    sc:url "http://sparks-lab.org/server/spot-disorder/" .
+
+<https://bio.tools/spot-disorder-single> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Web application" ;
+    sc:citation <https://doi.org/10.1021/acs.jcim.8b00636>,
+        "pubmed:30395465" ;
+    sc:description "SPOT-Disorder-Single is a single-sequence method that is more accurate than SPOT-Disorder (a profile-based method) for proteins with few homologous sequences and comparable for proteins in predicting long-disordered regions." ;
+    sc:isAccessibleForFree true ;
+    sc:name "SPOT-Disorder-Single" ;
+    sc:operatingSystem "Linux" ;
+    sc:url "http://sparks-lab.org/server/spot-disorder-single/" .
+
 <https://bio.tools/spot-disorder2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0593,
         edam:topic_0602,
@@ -451127,15 +478690,17 @@ SpolLineages is a software tool mainly written in Java allowing to predict Mycob
     sc:featureList edam:operation_0272,
         edam:operation_0470,
         edam:operation_3904 ;
+    sc:isAccessibleForFree true ;
     sc:name "SPOT-Disorder2" ;
+    sc:operatingSystem "Linux" ;
     sc:url "https://sparks-lab.org/server/spot-disorder2/" .
 
 <https://bio.tools/spot-rna2> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3495" ;
-            sc:name "RNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3495" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3495" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "RNA sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btab165>,
         "pubmed:33704363" ;
     sc:description "Improved RNA Secondary Secondary Structure Prediction using Evolutionary Profile, Mutational Coupling and Two-dimensional Transfer Learning" ;
@@ -451145,7 +478710,7 @@ SpolLineages is a software tool mainly written in Java allowing to predict Mycob
     sc:url "https://sparks-lab.org/server/spot-rna2/" .
 
 <https://bio.tools/spot-seq-rna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0602,
@@ -451165,7 +478730,7 @@ SpolLineages is a software tool mainly written in Java allowing to predict Mycob
     biotools:primaryContact "Yaoqi Zhou" .
 
 <https://bio.tools/spot-struct-dna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btq295> ;
@@ -451180,7 +478745,7 @@ SpolLineages is a software tool mainly written in Java allowing to predict Mycob
     sc:url "http://sparks-lab.org/yueyang/server/SPOT-Struct-DNA" .
 
 <https://bio.tools/spot-struct-rna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099 ;
     sc:citation <https://doi.org/10.1093/nar/gkq1266> ;
@@ -451192,7 +478757,7 @@ SpolLineages is a software tool mainly written in Java allowing to predict Mycob
     sc:url "http://sparks-lab.org/yueyang/server/SPOT-Struct-RNA/" .
 
 <https://bio.tools/spot_transcriptomes> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3170,
@@ -451213,7 +478778,7 @@ SpolLineages is a software tool mainly written in Java allowing to predict Mycob
     sc:url "https://frischknechtlab.shinyapps.io/SPOT/" .
 
 <https://bio.tools/spotcaliper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0611,
         edam:topic_3365,
@@ -451232,7 +478797,7 @@ SpolLineages is a software tool mainly written in Java allowing to predict Mycob
     sc:url "http://bigwww.epfl.ch/algorithms/spotcaliper/" .
 
 <https://bio.tools/spotlight> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_1775,
@@ -451248,7 +478813,7 @@ SpolLineages is a software tool mainly written in Java allowing to predict Mycob
     sc:url "http://hub.iis.sinica.edu.tw/spotlight/" .
 
 <https://bio.tools/spotlight-transcriptomics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library",
         "Web application" ;
@@ -451268,8 +478833,28 @@ The goal of SPOTlight is to provide a tool that enables the deconvolution of cel
     sc:name "SPOTlight" ;
     sc:url "http://mouse.brain-map.org/experiment/siv?id=69672462&imageId=69647545&initImage=ish&coordSystem=pixel&x=4464.5&y=3184.5&z=1" .
 
+<https://bio.tools/spotlink> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Desktop application" ;
+    sc:applicationSubCategory edam:topic_0080,
+        edam:topic_0121,
+        edam:topic_0128,
+        edam:topic_0749,
+        edam:topic_3520 ;
+    sc:citation <https://doi.org/10.1101/2021.12.31.474672> ;
+    sc:description "SpotLink enables sensitive and precise identification of site non-specific cross-links at the proteome scale." ;
+    sc:featureList edam:operation_2428,
+        edam:operation_3435,
+        edam:operation_3755 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "SpotLink" ;
+    sc:operatingSystem "Windows" ;
+    sc:softwareHelp <https://github.com/DICP1810/SpotLink/blob/main/Manual%20for%20SpotLink.pdf> ;
+    sc:url "https://github.com/DICP1810/SpotLink" .
+
 <https://bio.tools/spotlite> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0602,
@@ -451287,10 +478872,10 @@ The goal of SPOTlight is to provide a tool that enables the deconvolution of cel
 
 <https://bio.tools/spoton> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_2350" ;
+            sc:name "Protein structure" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3307 ;
     sc:author <http://orcid.org/0000-0001-7369-1322> ;
@@ -451309,7 +478894,7 @@ SpotOn is a robust algorithm developed to identify and classify the interfacial
     biotools:primaryContact <http://orcid.org/0000-0001-7369-1322> .
 
 <https://bio.tools/spotone> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0154,
         edam:topic_3474 ;
@@ -451324,7 +478909,7 @@ SpotOn is a robust algorithm developed to identify and classify the interfacial
     sc:url "http://moreiralab.com/resources/spotone" .
 
 <https://bio.tools/spotpy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_2269,
@@ -451344,7 +478929,7 @@ SpotOn is a robust algorithm developed to identify and classify the interfacial
     biotools:primaryContact <http://orcid.org/0000-0001-7780-2376> .
 
 <https://bio.tools/spotsegmentation> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3518,
@@ -451363,7 +478948,7 @@ SpotOn is a robust algorithm developed to identify and classify the interfacial
     biotools:primaryContact "Chris Fraley" .
 
 <https://bio.tools/spottool> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3344,
         edam:topic_3372 ;
@@ -451377,7 +478962,7 @@ SpotOn is a robust algorithm developed to identify and classify the interfacial
     sc:url "https://github.com/big-data-lab-team/spot" .
 
 <https://bio.tools/spotyping> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0157,
         edam:topic_0199,
@@ -451397,7 +478982,7 @@ SpotOn is a robust algorithm developed to identify and classify the interfacial
     biotools:primaryContact "Rick Twee-Hee Ong" .
 
 <https://bio.tools/spp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3169 ;
@@ -451412,7 +478997,7 @@ SpotOn is a robust algorithm developed to identify and classify the interfacial
     biotools:primaryContact "Peter J. Park" .
 
 <https://bio.tools/spp-cpi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_3336,
@@ -451429,14 +479014,12 @@ SpotOn is a robust algorithm developed to identify and classify the interfacial
 
 <https://bio.tools/sppg> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2295" ;
-            sc:name "Gene ID" ;
-            sc:sameAs "http://edamontology.org/data_2295" ] ;
+            sc:additionalType "http://edamontology.org/data_2295" ;
+            sc:name "Gene ID" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1075" ;
-            sc:name "Protein family identifier" ;
-            sc:sameAs "http://edamontology.org/data_1075" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1075" ;
+            sc:name "Protein family identifier" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0780,
         edam:topic_3299 ;
@@ -451452,7 +479035,7 @@ SpotOn is a robust algorithm developed to identify and classify the interfacial
     sc:url "http://bioinformatics.psb.ugent.be/cgi-bin/SPPG/index.htpl" .
 
 <https://bio.tools/sppider> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0128,
@@ -451469,7 +479052,7 @@ SpotOn is a robust algorithm developed to identify and classify the interfacial
     sc:url "http://sppider.cchmc.org/" .
 
 <https://bio.tools/spppca> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3365,
@@ -451486,18 +479069,17 @@ SpotOn is a robust algorithm developed to identify and classify the interfacial
 
 <https://bio.tools/spraynpray> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2795" ;
-            sc:name "ORF identifier" ;
-            sc:sameAs "http://edamontology.org/data_2795" ],
+            sc:additionalType "http://edamontology.org/data_2093" ;
+            sc:name "Data reference" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2093" ;
-            sc:name "Data reference" ;
-            sc:sameAs "http://edamontology.org/data_2093" ] ;
+            sc:additionalType "http://edamontology.org/data_2795" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "ORF identifier" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0203,
@@ -451520,7 +479102,7 @@ SpotOn is a robust algorithm developed to identify and classify the interfacial
     sc:url "https://github.com/Arkadiy-Garber/SprayNPray" .
 
 <https://bio.tools/sprd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0166,
@@ -451540,7 +479122,7 @@ SpotOn is a robust algorithm developed to identify and classify the interfacial
         "Aykut Üren" .
 
 <https://bio.tools/spread> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0611,
         edam:topic_0769 ;
@@ -451556,7 +479138,7 @@ SPREAD: A fully automated toolkit for single-particle cryo-EM data 3D reconstruc
     sc:url "http://www.csbio.sjtu.edu.cn/bioinf/SPREAD/" .
 
 <https://bio.tools/spreg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3053,
@@ -451570,7 +479152,7 @@ SPREAD: A fully automated toolkit for single-particle cryo-EM data 3D reconstruc
     sc:url "http://dlin.web.unc.edu/software/spreg/" .
 
 <https://bio.tools/spring> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3168,
@@ -451594,7 +479176,7 @@ SPREAD: A fully automated toolkit for single-particle cryo-EM data 3D reconstruc
         "Ying Chih Lin" .
 
 <https://bio.tools/sprint> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3053,
@@ -451610,8 +479192,30 @@ SPREAD: A fully automated toolkit for single-particle cryo-EM data 3D reconstruc
     sc:softwareHelp <https://www.ed.ac.uk/pathway-medicine/our-research/dpmgroups/ghazal-group/pathway-informatics/sprint/sprint> ;
     sc:url "http://www.r-sprint.org/" .
 
+<https://bio.tools/sprint-gly> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0082,
+        edam:topic_0154,
+        edam:topic_0601,
+        edam:topic_0736,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1007/978-1-0716-2317-6_9>,
+        "pubmed:35696081" ;
+    sc:description "Computational Prediction of N- and O-Linked Glycosylation Sites for Human and Mouse Proteins." ;
+    sc:featureList edam:operation_0267,
+        edam:operation_0417,
+        edam:operation_0474 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "SPRINT-Gly" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://sparks-lab.org/server/sprint-gly/" .
+
 <https://bio.tools/sprint-rna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_3170,
@@ -451628,7 +479232,7 @@ SPREAD: A fully automated toolkit for single-particle cryo-EM data 3D reconstruc
     biotools:primaryContact "Weidong Tian" .
 
 <https://bio.tools/sprite> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -451650,8 +479254,32 @@ SPREAD: A fully automated toolkit for single-particle cryo-EM data 3D reconstruc
     sc:url "http://mfrlab.org/grafss/sprite" ;
     biotools:primaryContact "Sprite Support" .
 
+<https://bio.tools/sprite-pipeline> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_0654,
+        edam:topic_0659,
+        edam:topic_0769,
+        edam:topic_3168 ;
+    sc:citation <https://doi.org/10.1038/S41596-021-00633-Y>,
+        "pubmed:35013617" ;
+    sc:description "A genome-wide method for mapping higher-order 3D interactions in the nucleus using combinatorial split-and-pool barcoding." ;
+    sc:featureList edam:operation_1812,
+        edam:operation_3192,
+        edam:operation_3200,
+        edam:operation_3216 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "SPRITE" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://github.com/GuttmanLab/sprite-pipeline/wiki> ;
+    sc:url "https://github.com/GuttmanLab/sprite-pipeline.git" .
+
 <https://bio.tools/sprites> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654,
@@ -451668,7 +479296,7 @@ SPREAD: A fully automated toolkit for single-particle cryo-EM data 3D reconstruc
     sc:url "https://github.com/zhangzhen/sprites" .
 
 <https://bio.tools/spritz> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -451692,7 +479320,7 @@ SPREAD: A fully automated toolkit for single-particle cryo-EM data 3D reconstruc
     biotools:primaryContact "Gianluca Pollastri" .
 
 <https://bio.tools/spritz-rna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
@@ -451721,7 +479349,7 @@ Monitor progress in the Information textbox. The final database named final/comb
     sc:url "https://smith-chem-wisc.github.io/Spritz/" .
 
 <https://bio.tools/spserver> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0130,
@@ -451741,7 +479369,7 @@ Monitor progress in the Information textbox. The final database named final/comb
     sc:url "https://sbi.upf.edu/spserver/" .
 
 <https://bio.tools/spsimseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0203,
         edam:topic_0622,
@@ -451757,7 +479385,7 @@ Monitor progress in the Information textbox. The final database named final/comb
     sc:url "https://github.com/CenterForStatistics-UGent/SPsimSeq" .
 
 <https://bio.tools/spudnig> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3474 ;
     sc:citation <https://doi.org/10.3758/S13428-020-01350-2>,
@@ -451771,7 +479399,7 @@ This repository contains the source code of the SPeeding Up the Detection of Non
     sc:url "https://github.com/jorrip/SPUDNIG" .
 
 <https://bio.tools/spumoni> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0621,
         edam:topic_3168,
@@ -451790,7 +479418,7 @@ This repository contains the source code of the SPeeding Up the Detection of Non
         <https://orcid.org/0000-0003-2437-1976> .
 
 <https://bio.tools/spunc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0097,
@@ -451806,7 +479434,7 @@ This repository contains the source code of the SPeeding Up the Detection of Non
     sc:url "http://www.ibi.vu.nl/programs/spuncwww/" .
 
 <https://bio.tools/spurio> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -451825,7 +479453,7 @@ This repository contains the source code of the SPeeding Up the Detection of Non
     biotools:primaryContact "Alex Bateman" .
 
 <https://bio.tools/spvec> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
         edam:topic_3306,
@@ -451845,7 +479473,7 @@ Drug discovery is an academical and commercial process of global importance."""
     sc:url "https://github.com/dqwei-lab/SPVec" .
 
 <https://bio.tools/sqn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0632,
@@ -451861,7 +479489,7 @@ Drug discovery is an academical and commercial process of global importance."""
     sc:url "http://www.stat.brown.edu/ZWU/research.aspx" .
 
 <https://bio.tools/sqtl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0203,
@@ -451877,22 +479505,22 @@ Drug discovery is an academical and commercial process of global importance."""
 
 <https://bio.tools/sqtlseeker> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ],
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Expression data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ],
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Sequence variations" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ] ;
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_3003" ;
+            sc:name "Annotation track" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0951" ;
-            sc:name "Statistical estimate score" ;
-            sc:sameAs "http://edamontology.org/data_0951" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0951" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Statistical estimate score" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_3170,
@@ -451915,7 +479543,7 @@ The pipeline performs the following analysis steps: 1) Index the genotype file,
     sc:url "https://github.com/guigolab/sqtlseeker2-nf" .
 
 <https://bio.tools/squadd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0602 ;
@@ -451936,7 +479564,7 @@ The pipeline performs the following analysis steps: 1) Index the genotype file,
     biotools:primaryContact "Martial Sankar" .
 
 <https://bio.tools/squamatabase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0637,
         edam:topic_3050,
         edam:topic_3071,
@@ -451954,7 +479582,7 @@ Squamatabase is a database of prey items recorded in diet samples from the world
     sc:url "https://github.com/blueraleigh/squamatabase" .
 
 <https://bio.tools/squeegee> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3174,
         edam:topic_3697,
@@ -451971,7 +479599,7 @@ Squamatabase is a database of prey items recorded in diet samples from the world
     biotools:primaryContact <https://orcid.org/0000-0002-3760-564X> .
 
 <https://bio.tools/squeezemeta> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3174,
@@ -451991,7 +479619,7 @@ Squamatabase is a database of prey items recorded in diet samples from the world
     sc:url "https://github.com/jtamames/SqueezeMeta" .
 
 <https://bio.tools/squidlab> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0593,
         edam:topic_3570 ;
     sc:citation <https://doi.org/10.1063/1.5137820>,
@@ -452005,7 +479633,7 @@ We present an open-source program free to download for academic use with a full
     sc:url "https://wrap.warwick.ac.uk/129665/" .
 
 <https://bio.tools/squidpy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -452025,8 +479653,31 @@ Squidpy is a tool for the analysis and visualization of spatial molecular data.
     sc:softwareHelp <https://squidpy.readthedocs.io/en/latest/> ;
     sc:url "https://github.com/theislab/squidpy" .
 
+<https://bio.tools/squigglenet> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0196,
+        edam:topic_3173,
+        edam:topic_3174,
+        edam:topic_3175,
+        edam:topic_3519 ;
+    sc:citation <https://doi.org/10.1186/S13059-021-02511-Y>,
+        "pmcid:PMC8548853",
+        "pubmed:34706748" ;
+    sc:description "SquiggleNet is a 1D ResNet based model to classify Oxford Nanopore raw electrical signals as target or non-target for Read-Until sequence enrichment or depletion." ;
+    sc:featureList edam:operation_0292,
+        edam:operation_3185,
+        edam:operation_3211 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "SquiggleNet" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/welch-lab/SquiggleNet" .
+
 <https://bio.tools/squirls> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0622,
@@ -452047,7 +479698,7 @@ Super-quick Information Content and Random Forest Learning for Splice Variants."
     sc:url "https://github.com/TheJacksonLaboratory/Squirls" .
 
 <https://bio.tools/sr-asm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196 ;
     sc:citation "pubmed:19477687" ;
@@ -452060,7 +479711,7 @@ Super-quick Information Content and Random Forest Learning for Splice Variants."
     biotools:primaryContact "Contact page" .
 
 <https://bio.tools/sr-tesseler> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3070 ;
     sc:citation <https://doi.org/10.1038/nmeth.3579>,
@@ -452076,7 +479727,7 @@ Super-quick Information Content and Random Forest Learning for Splice Variants."
     sc:url "http://www.iins.u-bordeaux.fr/team-sibarita-sr-tesseler" .
 
 <https://bio.tools/sra> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3168,
@@ -452101,7 +479752,7 @@ Super-quick Information Content and Random Forest Learning for Splice Variants."
     biotools:primaryContact "Rasko Leinonen" .
 
 <https://bio.tools/sra-disk-diffusion> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0209,
         edam:topic_0634,
@@ -452115,7 +479766,7 @@ Super-quick Information Content and Random Forest Learning for Splice Variants."
     sc:url "http://ki.se/en/labmed/christian-giske-group#header-3" .
 
 <https://bio.tools/sra-tools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0654,
@@ -452132,7 +479783,7 @@ Super-quick Information Content and Random Forest Learning for Splice Variants."
     sc:url "https://trace.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?view=toolkit_doc" .
 
 <https://bio.tools/sradb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3071 ;
@@ -452152,7 +479803,7 @@ Super-quick Information Content and Random Forest Learning for Splice Variants."
     biotools:primaryContact "Jack Zhu" .
 
 <https://bio.tools/sramp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0099,
@@ -452169,7 +479820,7 @@ Super-quick Information Content and Random Forest Learning for Splice Variants."
     sc:url "http://www.cuilab.cn/sramp" .
 
 <https://bio.tools/srap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -452193,7 +479844,7 @@ Super-quick Information Content and Random Forest Learning for Splice Variants."
     biotools:primaryContact "Charles Warden" .
 
 <https://bio.tools/sratailor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0219,
@@ -452210,7 +479861,7 @@ Super-quick Information Content and Random Forest Learning for Splice Variants."
     biotools:primaryContact "Support" .
 
 <https://bio.tools/srax> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0625,
         edam:topic_0769,
@@ -452229,7 +479880,7 @@ sraX is designed to read assembled sequence files in FASTA format and systematic
     sc:url "https://github.com/lgpdevtools/srax" .
 
 <https://bio.tools/srcp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_0769,
@@ -452252,7 +479903,7 @@ sraX is designed to read assembled sequence files in FASTA format and systematic
     sc:url "https://github.com/avigayel/SRCP" .
 
 <https://bio.tools/srcpred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0128,
@@ -452270,7 +479921,7 @@ sraX is designed to read assembled sequence files in FASTA format and systematic
     biotools:primaryContact "Shandar Ahmad" .
 
 <https://bio.tools/srcv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0593,
         edam:topic_3068,
         edam:topic_3474 ;
@@ -452287,7 +479938,7 @@ Spectrum recognition based on computer vision: A tool for 13C and 1H NMR data ex
     sc:url "https://github.com/WJmodels/SRCV" .
 
 <https://bio.tools/srd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_3301,
         edam:topic_3324 ;
@@ -452316,7 +479967,7 @@ Spectrum recognition based on computer vision: A tool for 13C and 1H NMR data ex
     biotools:primaryContact "Olivier Collin" .
 
 <https://bio.tools/srda> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0203,
@@ -452335,8 +479986,43 @@ Spectrum recognition based on computer vision: A tool for 13C and 1H NMR data ex
     sc:url "https://cran.r-project.org/web/packages/sRDA/index.html" ;
     biotools:primaryContact "Attila Csala" .
 
+<https://bio.tools/sreprhot> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0128,
+        edam:topic_0209,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC138>,
+        "pubmed:35253843" ;
+    sc:description "An ensemble approach to predict binding hotspots in protein-RNA interactions based on SMOTE data balancing and random grouping feature selection strategies." ;
+    sc:featureList edam:operation_3901,
+        edam:operation_3937,
+        edam:operation_4009 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "SREPRHot" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/ChunhuaLiLab/SREPRHot" .
+
+<https://bio.tools/srf> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:citation <https://doi.org/10.1093/bioinformatics/bth103>,
+        "pubmed:14976032" ;
+    sc:description "Spectral Repeat Finder (SRF) is a program to find repeats through an analysis of the power spectrum of a given DNA sequence." ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "srf" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/srf/> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/srf/" .
+
 <https://bio.tools/srfim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3168 ;
@@ -452353,8 +480039,29 @@ Spectrum recognition based on computer vision: A tool for 13C and 1H NMR data ex
     sc:softwareVersion "0.0-95" ;
     sc:url "http://www.cbcb.umd.edu/~hcorrada/secgen/" .
 
+<https://bio.tools/srg-vote> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0659,
+        edam:topic_2640,
+        edam:topic_3315,
+        edam:topic_3474,
+        edam:topic_3577 ;
+    sc:citation <https://doi.org/10.1109/JBHI.2022.3169542>,
+        "pubmed:35471879" ;
+    sc:description "Predicting miRNA-gene relationships via embedding and LSTM ensemble." ;
+    sc:featureList edam:operation_2426,
+        edam:operation_3937 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "SRG-vote" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/Xshelton/SRG-vote" .
+
 <https://bio.tools/srgnet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0204,
@@ -452374,7 +480081,7 @@ Spectrum recognition based on computer vision: A tool for 13C and 1H NMR data ex
     biotools:primaryContact "Isar Nassiri" .
 
 <https://bio.tools/sride> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -452391,7 +480098,7 @@ Spectrum recognition based on computer vision: A tool for 13C and 1H NMR data ex
     biotools:primaryContact "Csaba Magyar" .
 
 <https://bio.tools/srinversion> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0102,
@@ -452407,8 +480114,31 @@ Spectrum recognition based on computer vision: A tool for 13C and 1H NMR data ex
     sc:softwareHelp <http://paed.hku.hk/genome/software/SRinversion/manual.html> ;
     sc:url "http://paed.hku.hk/genome/software/SRinversion/index.html" .
 
+<https://bio.tools/sriq> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0602,
+        edam:topic_3170,
+        edam:topic_3173,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1016/J.CSBJ.2022.03.036>,
+        "pmcid:PMC9010551",
+        "pubmed:35465158" ;
+    sc:description "This is an implementation of Systematic Random forest Integration to Qualitative threshold (SRIQ) clustering. SRIQ clusters by finding a core clusters of highly correlated observations, then spiralling out from them to create bigger clusters. SRIQ evaluates clustering solution stability on its own and won't need user input for what number of cluster solutions to be evaluated." ;
+    sc:featureList edam:operation_3223,
+        edam:operation_3432,
+        edam:operation_3463 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "SRIQ" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/StaafLab/SRIQ" .
+
 <https://bio.tools/sris> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0659,
         edam:topic_0780,
@@ -452424,7 +480154,7 @@ Spectrum recognition based on computer vision: A tool for 13C and 1H NMR data ex
     sc:url "http://sris.itps.ncku.edu.tw/" .
 
 <https://bio.tools/srma> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation "pubmed:20932289" ;
@@ -452439,7 +480169,7 @@ Spectrum recognition based on computer vision: A tool for 13C and 1H NMR data ex
     biotools:primaryContact "Admin" .
 
 <https://bio.tools/srmstats> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_2269,
@@ -452455,7 +480185,7 @@ Spectrum recognition based on computer vision: A tool for 13C and 1H NMR data ex
     sc:url "http://www.stat.purdue.edu/~chang54/SRMstats/Home.html" .
 
 <https://bio.tools/srna_workflow> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0204 ;
@@ -452473,7 +480203,7 @@ Spectrum recognition based on computer vision: A tool for 13C and 1H NMR data ex
     biotools:primaryContact "Bruno Costa" .
 
 <https://bio.tools/srnadiff> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3295 ;
@@ -452492,7 +480222,7 @@ Spectrum recognition based on computer vision: A tool for 13C and 1H NMR data ex
     biotools:primaryContact "Matthias Zytnicki" .
 
 <https://bio.tools/srnaloop> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0654,
@@ -452510,7 +480240,7 @@ Spectrum recognition based on computer vision: A tool for 13C and 1H NMR data ex
     sc:url "http://arep.med.harvard.edu/miRNA/" .
 
 <https://bio.tools/srnamapper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0102,
@@ -452527,7 +480257,7 @@ srnaMapper uses the bwa API, and the bwa index files. Use bwa index to generate
     sc:url "https://github.com/mzytnicki/srnaMapper" .
 
 <https://bio.tools/srnarftarget> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_0749,
@@ -452544,7 +480274,7 @@ srnaMapper uses the bwa API, and the bwa index files. Use bwa index to generate
     biotools:primaryContact <https://orcid.org/0000-0002-0643-2547> .
 
 <https://bio.tools/srnatargetdigger> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0659,
         edam:topic_0780,
@@ -452562,7 +480292,7 @@ Some categories of small RNAs (sRNAs) in plants, such as microRNA (miRNAs), tran
     sc:url "http://www.bioinfolab.cn/sRNATD.html" .
 
 <https://bio.tools/sroogle> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3320,
         edam:topic_3512 ;
@@ -452578,8 +480308,23 @@ Some categories of small RNAs (sRNAs) in plants, such as microRNA (miRNAs), tran
     sc:url "http://sroogle.tau.ac.il" ;
     biotools:primaryContact "SROOGLE Support" .
 
+<https://bio.tools/srplot> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0092,
+        edam:topic_3308 ;
+    sc:author "jimmy" ;
+    sc:description "Here, we presented a freely accessible easy-to-use web server that integrated more than 120 commonly used data visualization and graphing functions together, including heatmap, venn diagram, volcano plot, bubble plot, chromsome plot, circos plot, scatter plot, .... It can be run easily with all Web browsers, with a user-friendly graphical interface, users can paste your data directly into the input box according to the defined file format. Modification operations can be easily performed, and graphs can be generated in real time. The resulting graphs can be downloaded in bitmap (PNG or TIFF) or vector (PDF or SVG) format in publication quality." ;
+    sc:featureList edam:operation_0337 ;
+    sc:isAccessibleForFree true ;
+    sc:name "SRplot" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://www.bioinformatics.com.cn/srplot" .
+
 <https://bio.tools/srprism> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0102,
         edam:topic_0196,
@@ -452597,7 +480342,7 @@ Some categories of small RNAs (sRNAs) in plants, such as microRNA (miRNAs), tran
     sc:url "https://github.com/ncbi/SRPRISM" .
 
 <https://bio.tools/srta-012> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0637,
         edam:topic_0659,
@@ -452619,8 +480364,22 @@ To run any of the analysis notebooks, you'll need the short-read-tax-assignment
     sc:name "srta-012" ;
     sc:url "http://bit.ly/srta-012" .
 
+<https://bio.tools/srtpred> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:citation "pubmed:18928201" ;
+    sc:description "SVM-based method for the classification of protein sequence as secretory or non-secretory protein." ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "srtpred" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/srtpred/> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/srtpred/" .
+
 <https://bio.tools/ss3d> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0154,
         edam:topic_0166,
@@ -452638,7 +480397,7 @@ SS3D is a bioinformatics tool for combining sequence and structure alignment dat
     sc:url "https://github.com/0x462e41/SS3D/" .
 
 <https://bio.tools/ssNPA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0634,
         edam:topic_3170 ;
@@ -452654,7 +480413,7 @@ liver_scrnaseq_analysis_111419.html""" ;
     sc:url "http://www.benoslab.pitt.edu/Software/ssnpa/" .
 
 <https://bio.tools/ssa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0160 ;
     sc:citation "pubmed:12824379" ;
@@ -452672,7 +480431,7 @@ liver_scrnaseq_analysis_111419.html""" ;
     biotools:primaryContact "Contact form" .
 
 <https://bio.tools/ssaha> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation "pubmed:11591649" ;
@@ -452690,14 +480449,10 @@ liver_scrnaseq_analysis_111419.html""" ;
 
 <https://bio.tools/ssaha2> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ],
-        [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Sequence alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102 ;
     sc:citation <https://doi.org/10.1101/gr.194201>,
@@ -452722,7 +480477,7 @@ liver_scrnaseq_analysis_111419.html""" ;
         "Zemin Ning" .
 
 <https://bio.tools/ssahasnp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0199,
@@ -452741,18 +480496,18 @@ liver_scrnaseq_analysis_111419.html""" ;
 
 <https://bio.tools/ssake> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ] ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:encodingFormat "http://edamontology.org/format_2546" ;
+            sc:name "Nucleic acid sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3181" ;
-            sc:name "Sequence assembly report" ;
-            sc:sameAs "http://edamontology.org/data_3181" ],
+            sc:additionalType "http://edamontology.org/data_3181" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Sequence assembly report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Nucleic acid sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3168 ;
@@ -452767,8 +480522,30 @@ liver_scrnaseq_analysis_111419.html""" ;
     sc:url "http://www.bcgsc.ca/platform/bioinfo/software/ssake" ;
     biotools:primaryContact "Rene Warren" .
 
+<https://bio.tools/ssam-lite> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0749,
+        edam:topic_3168,
+        edam:topic_3308,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.1101/2021.09.29.462194> ;
+    sc:description "A light-weight web app for rapid analysis of spatially resolved transcriptomics data." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_0337,
+        edam:operation_3436,
+        edam:operation_3907 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "SSAM-lite" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://ssam-lite.readthedocs.io> ;
+    sc:url "https://ssam-lite.bihealth.org" .
+
 <https://bio.tools/ssamk> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_2269,
@@ -452782,8 +480559,27 @@ liver_scrnaseq_analysis_111419.html""" ;
     sc:softwareHelp <http://www.stat.osu.edu/~lkubatko/software.html> ;
     sc:url "http://www.stat.osu.edu/~lkubatko/software.html" .
 
+<https://bio.tools/ssatan-x> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0196,
+        edam:topic_2269,
+        edam:topic_3324 ;
+    sc:citation <https://doi.org/10.1101/2021.11.22.469498> ;
+    sc:description "Stochastic Simulation Algorithm for effective spreading dynamics on Time-evolving Adaptive NetworX (SSATAN-X)." ;
+    sc:featureList edam:operation_0244,
+        edam:operation_2426,
+        edam:operation_3927 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "SSATAN-X" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/nmalysheva/SSATAN-X" .
+
 <https://bio.tools/ssber> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_2229,
@@ -452802,7 +480598,7 @@ liver_scrnaseq_analysis_111419.html""" ;
     biotools:primaryContact <https://orcid.org/0000-0001-5890-0448> .
 
 <https://bio.tools/ssbio> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0622,
@@ -452819,7 +480615,7 @@ liver_scrnaseq_analysis_111419.html""" ;
     biotools:primaryContact "Nathan Mih" .
 
 <https://bio.tools/sscore> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -452838,7 +480634,7 @@ liver_scrnaseq_analysis_111419.html""" ;
     biotools:primaryContact "Richard Kennedy" .
 
 <https://bio.tools/sscpred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0140,
         edam:topic_0769,
         edam:topic_3168 ;
@@ -452854,7 +480650,7 @@ There has been a significant improvement in protein residue contact prediction i
     sc:url "http://csbio.njust.edu.cn/bioinf/sscpred/" .
 
 <https://bio.tools/sscu> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -452873,7 +480669,7 @@ There has been a significant improvement in protein residue contact prediction i
     biotools:primaryContact "Yu Sun" .
 
 <https://bio.tools/ssdbain> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3068,
         edam:topic_3678 ;
@@ -452891,10 +480687,10 @@ bain is an abbreviation for BAyesian INformative hypothesis evaluation. It uses
 
 <https://bio.tools/sse-pssm> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0154,
@@ -452917,7 +480713,7 @@ bain is an abbreviation for BAyesian INformative hypothesis evaluation. It uses
     sc:url "http://10.life.nctu.edu.tw/SSE-PSSM" .
 
 <https://bio.tools/ssea> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_2885,
         edam:topic_3053,
@@ -452935,7 +480731,7 @@ bain is an abbreviation for BAyesian INformative hypothesis evaluation. It uses
     sc:url "https://cbcl.ics.uci.edu/SSEA/" .
 
 <https://bio.tools/ssep> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -452953,7 +480749,7 @@ bain is an abbreviation for BAyesian INformative hypothesis evaluation. It uses
     sc:url "http://cluster.physics.iisc.ernet.in/ssep/options.html" .
 
 <https://bio.tools/sseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -452972,7 +480768,7 @@ bain is an abbreviation for BAyesian INformative hypothesis evaluation. It uses
     biotools:primaryContact "Danni Yu" .
 
 <https://bio.tools/ssg-lugia> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0622,
@@ -452996,7 +480792,7 @@ bain is an abbreviation for BAyesian INformative hypothesis evaluation. It uses
     sc:url "https://nibtehaz.github.io/SSG-LUGIA/" .
 
 <https://bio.tools/ssi-ddi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0209,
@@ -453012,7 +480808,7 @@ bain is an abbreviation for BAyesian INformative hypothesis evaluation. It uses
     sc:url "https://github.com/kanz76/SSI-DDI" .
 
 <https://bio.tools/ssif> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0091,
         edam:topic_0154,
@@ -453028,7 +480824,7 @@ bain is an abbreviation for BAyesian INformative hypothesis evaluation. It uses
     sc:url "https://github.com/rashmie/SSIF" .
 
 <https://bio.tools/ssize> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203 ;
@@ -453047,7 +480843,7 @@ bain is an abbreviation for BAyesian INformative hypothesis evaluation. It uses
     biotools:primaryContact "Gregory R. Warnes" .
 
 <https://bio.tools/ssizer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0622,
         edam:topic_3277,
@@ -453060,7 +480856,7 @@ bain is an abbreviation for BAyesian INformative hypothesis evaluation. It uses
     sc:url "https://idrblab.org/ssizer/" .
 
 <https://bio.tools/sskdsp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0736,
@@ -453075,7 +480871,7 @@ bain is an abbreviation for BAyesian INformative hypothesis evaluation. It uses
     biotools:primaryContact "Lei Xie" .
 
 <https://bio.tools/sskm-succ> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0601,
         edam:topic_3510 ;
@@ -453090,8 +480886,34 @@ This package implements the SSKM_Succ algorithm incorporating K-means clustering
     sc:name "SSKM Succ" ;
     sc:url "https://github.com/yangyq505/SSKM_Succ.git" .
 
+<https://bio.tools/ssl-gcn> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2301" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "SMILES string" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_2840,
+        edam:topic_3336,
+        edam:topic_3375,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1186/S13321-021-00570-8>,
+        "pmcid:PMC8627024",
+        "pubmed:34838140" ;
+    sc:description "Chemical toxicity prediction based on semi-supervised learning and graph convolutional neural network." ;
+    sc:featureList edam:operation_2422,
+        edam:operation_3435,
+        edam:operation_3927 ;
+    sc:isAccessibleForFree true ;
+    sc:name "SSL-GCN" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://app.cbbio.online/ssl-gcn/home" .
+
 <https://bio.tools/ssm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121 ;
     sc:description "A data mining solution to map thousands of viral isolates (influenza, dengue and FMDV virus)." ;
@@ -453104,7 +480926,7 @@ This package implements the SSKM_Succ algorithm incorporating K-means clustering
     biotools:primaryContact "Software Support" .
 
 <https://bio.tools/ssmc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0632,
         edam:topic_0654,
@@ -453118,7 +480940,7 @@ This package implements the SSKM_Succ algorithm incorporating K-means clustering
     sc:url "http://ssmc-tl.com/Start.html" .
 
 <https://bio.tools/ssmd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2229,
         edam:topic_3295,
@@ -453135,7 +480957,7 @@ Deconvolution of mouse transcriptomic data is challenged by the fact that mouse
     sc:url "https://github.com/xiaoyulu95/SSMD" .
 
 <https://bio.tools/ssmirna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_3168,
         edam:topic_3474,
@@ -453152,7 +480974,7 @@ Deconvolution of mouse transcriptomic data is challenged by the fact that mouse
     sc:url "https://github.com/GreenCUBIC/SSmiRNA" .
 
 <https://bio.tools/ssndesign> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3050,
         edam:topic_3315,
         edam:topic_3573,
@@ -453168,7 +480990,7 @@ Streams and rivers are biodiverse and provide valuable ecosystem services. Maint
     sc:url "https://github.com/apear9/SSNdesign" .
 
 <https://bio.tools/ssp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0203,
@@ -453183,7 +481005,7 @@ Streams and rivers are biodiverse and provide valuable ecosystem services. Maint
     sc:url "http://ssp.biocuckoo.org/" .
 
 <https://bio.tools/ssp-shift> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -453199,7 +481021,7 @@ Streams and rivers are biodiverse and provide valuable ecosystem services. Maint
     sc:url "http://abragam.med.utoronto.ca/~JFKlab/" .
 
 <https://bio.tools/sspa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -453220,7 +481042,7 @@ Streams and rivers are biodiverse and provide valuable ecosystem services. Maint
     biotools:primaryContact "Maarten van Iterson" .
 
 <https://bio.tools/sspace> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622 ;
     sc:citation "pubmed:21149342" ;
@@ -453234,7 +481056,7 @@ Streams and rivers are biodiverse and provide valuable ecosystem services. Maint
     biotools:primaryContact "SSPACE Support" .
 
 <https://bio.tools/sspred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0623,
@@ -453251,7 +481073,7 @@ Streams and rivers are biodiverse and provide valuable ecosystem services. Maint
     sc:url "http://www.bioinformatics.org/sspred/html/sspred.html" .
 
 <https://bio.tools/sspro> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -453270,22 +481092,22 @@ Streams and rivers are biodiverse and provide valuable ecosystem services. Maint
 
 <https://bio.tools/ssrcalc> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2974" ;
-            sc:name "Protein sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_2974" ],
+            sc:additionalType "http://edamontology.org/data_2974" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Protein sequence (raw)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Protein sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2016" ;
-            sc:name "Amino acid property" ;
-            sc:sameAs "http://edamontology.org/data_2016" ],
+            sc:additionalType "http://edamontology.org/data_2016" ;
+            sc:encodingFormat "http://edamontology.org/format_3468" ;
+            sc:name "Amino acid property" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1520" ;
-            sc:name "Peptide hydrophobic moment" ;
-            sc:sameAs "http://edamontology.org/data_1520" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1520" ;
+            sc:encodingFormat "http://edamontology.org/format_3468" ;
+            sc:name "Peptide hydrophobic moment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -453301,7 +481123,7 @@ Streams and rivers are biodiverse and provide valuable ecosystem services. Maint
     sc:url "http://hs2.proteome.ca/SSRCalc/SSRCalc.html" .
 
 <https://bio.tools/ssre> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_2229,
@@ -453316,7 +481138,7 @@ Streams and rivers are biodiverse and provide valuable ecosystem services. Maint
     biotools:primaryContact <https://orcid.org/0000-0002-0188-1394> .
 
 <https://bio.tools/ssrenricher> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0780,
         edam:topic_2885,
         edam:topic_3168,
@@ -453339,7 +481161,7 @@ You just need to select all of your fasta files from Trinity and run this softwa
     sc:url "https://github.com/byemaxx/SSREnricher" .
 
 <https://bio.tools/ssrmmd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0621,
         edam:topic_0632,
@@ -453356,8 +481178,33 @@ You just need to select all of your fasta files from Trinity and run this softwa
     sc:name "SSRMMD" ;
     sc:url "https://github.com/GouXiangJian/SSRMMD" .
 
+<https://bio.tools/ssrtool> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0082,
+        edam:topic_0097,
+        edam:topic_0659,
+        edam:topic_3512,
+        edam:topic_3542 ;
+    sc:citation <https://doi.org/10.1016/J.CSBJ.2022.05.028>,
+        "pmcid:PMC9136272",
+        "pubmed:35664227" ;
+    sc:description "A web tool for evaluating RNA secondary structure predictions based on species-specific functional interpretability." ;
+    sc:featureList edam:operation_0278,
+        edam:operation_0474,
+        edam:operation_0502,
+        edam:operation_0570,
+        edam:operation_2441 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Apache-2.0" ;
+    sc:name "SSRTool" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://cobisHSS0.im.nuk.edu.tw/SSRTool/" .
+
 <https://bio.tools/sst> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_1317 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/bts223>,
@@ -453372,8 +481219,27 @@ You just need to select all of your fasta files from Trinity and run this softwa
     sc:url "http://lcb.infotech.monash.edu.au/sstweb/Submission_page.html" ;
     biotools:primaryContact <https://orcid.org/0000-0002-9020-3164> .
 
+<https://bio.tools/sstdp> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0602,
+        edam:topic_3304,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.3389/FNINS.2021.756876>,
+        "pmcid:PMC8603828",
+        "pubmed:34803591" ;
+    sc:description "Supervised Spike Timing Dependent Plasticity for Efficient Spiking Neural Network Training." ;
+    sc:featureList edam:operation_3937 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "SSTDP" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/MXHX7199/SNN-SSTDP" .
+
 <https://bio.tools/sstructview> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0097,
@@ -453395,7 +481261,7 @@ You just need to select all of your fasta files from Trinity and run this softwa
     biotools:primaryContact "SStructView Support" .
 
 <https://bio.tools/ssviz> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0659,
@@ -453415,7 +481281,7 @@ You just need to select all of your fasta files from Trinity and run this softwa
     biotools:primaryContact "Diana Low" .
 
 <https://bio.tools/ssvqc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0601,
         edam:topic_0749,
@@ -453437,7 +481303,7 @@ You just need to select all of your fasta files from Trinity and run this softwa
     sc:url "https://github.com/FrietzeLabUVM/ssvQC" .
 
 <https://bio.tools/ssw> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0622,
@@ -453453,7 +481319,7 @@ You just need to select all of your fasta files from Trinity and run this softwa
     sc:url "http://blog.gkno.me/post/42508822069/ssw-library" .
 
 <https://bio.tools/staar_workflow> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_2640,
@@ -453470,7 +481336,7 @@ You just need to select all of your fasta files from Trinity and run this softwa
     sc:url "https://github.com/sheilagaynor/STAAR_workflow" .
 
 <https://bio.tools/stab> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3170,
         edam:topic_3308,
@@ -453485,8 +481351,28 @@ The human brain is the most complex organ consisting of billions of neuronal and
     sc:name "STAB" ;
     sc:url "http://stab.comp-sysbio.org" .
 
+<https://bio.tools/stable-abppred> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0632,
+        edam:topic_3303,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1093/BIB/BBAB439>,
+        "pubmed:34750606" ;
+    sc:description "A stacked ensemble predictor based on biLSTM and attention mechanism for accelerated discovery of antibacterial peptides." ;
+    sc:featureList edam:operation_0321,
+        edam:operation_0407,
+        edam:operation_3659 ;
+    sc:isAccessibleForFree true ;
+    sc:name "StaBle-ABPpred" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://stable-abppred.anvil.app" .
+
 <https://bio.tools/stabs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_2269 ;
@@ -453501,7 +481387,7 @@ The human brain is the most complex organ consisting of billions of neuronal and
     sc:url "http://cran.r-project.org/web/packages/stabs/index.html" .
 
 <https://bio.tools/stac> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_2269 ;
@@ -453520,7 +481406,7 @@ The human brain is the most complex organ consisting of billions of neuronal and
     sc:url "http://www.cbil.upenn.edu/STAC/" .
 
 <https://bio.tools/stacas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0769,
         edam:topic_3170,
@@ -453536,7 +481422,7 @@ Integrating scRNA-seq data using STACAS and Seurat 3.""" ;
     sc:url "https://github.com/carmonalab/STACAS" .
 
 <https://bio.tools/staccato> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0097,
@@ -453551,7 +481437,7 @@ Integrating scRNA-seq data using STACAS and Seurat 3.""" ;
     sc:url "http://bioinfo3d.cs.tau.ac.il/staccato/" .
 
 <https://bio.tools/stackcppred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
         edam:topic_0202,
@@ -453567,8 +481453,71 @@ Identifying Cell-Penetrating Peptides and Their Uptake Efficiency.""" ;
     sc:name "StackCPPred" ;
     sc:url "https://github.com/Excelsior511/StackCPPred" .
 
+<https://bio.tools/stackdppiv> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0091,
+        edam:topic_0154,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1016/J.YMETH.2021.12.001>,
+        "pubmed:34883239" ;
+    sc:description "A novel computational approach for accurate prediction of dipeptidyl peptidase IV (DPP-IV) inhibitory peptides." ;
+    sc:featureList edam:operation_3631 ;
+    sc:isAccessibleForFree true ;
+    sc:name "StackDPPIV" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://pmlabstack.pythonanywhere.com/StackDPPIV" .
+
+<https://bio.tools/stackepi> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0749,
+        edam:topic_2229,
+        edam:topic_3173,
+        edam:topic_3474,
+        edam:topic_3940 ;
+    sc:citation <https://doi.org/10.1186/S12859-022-04821-9>,
+        "pmcid:PMC9277947",
+        "pubmed:35820811" ;
+    sc:description "Identification of cell line-specific enhancer-promoter interactions based on stacking ensemble learning." ;
+    sc:featureList edam:operation_0267,
+        edam:operation_0440,
+        edam:operation_3937 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "StackEPI" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/20032303092/StackEPI.git" .
+
+<https://bio.tools/stackhcv> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_2258,
+        edam:topic_2275,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1007/S10822-021-00418-1>,
+        "pubmed:34622387" ;
+    sc:description "A web-based integrative machine-learning framework for large-scale identification of hepatitis C virus NS5B inhibitors." ;
+    sc:featureList edam:operation_3454,
+        edam:operation_3899,
+        edam:operation_4009 ;
+    sc:isAccessibleForFree true ;
+    sc:name "StackHCV" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://camt.pythonanywhere.com/StackHCV" .
+
 <https://bio.tools/stackil6> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2830,
@@ -453587,7 +481536,7 @@ Identifying Cell-Penetrating Peptides and Their Uptake Efficiency.""" ;
         "Watshara Shoombuatong" .
 
 <https://bio.tools/stackppi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0128,
         edam:topic_0154,
@@ -453605,7 +481554,7 @@ Protein-protein interactions (PPIs) are involved with most cellular activities a
     sc:url "https://github.com/QUST-AIBBDRC/StackPPI/" .
 
 <https://bio.tools/stackram> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3295,
         edam:topic_3320,
@@ -453620,7 +481569,7 @@ Protein-protein interactions (PPIs) are involved with most cellular activities a
     sc:url "https://github.com/QUST-AIBBDRC/StackRAM/" .
 
 <https://bio.tools/stacks> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3056 ;
@@ -453635,7 +481584,7 @@ Protein-protein interactions (PPIs) are involved with most cellular activities a
     sc:url "http://catchenlab.life.illinois.edu/stacks/" .
 
 <https://bio.tools/stackslider> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -453652,7 +481601,7 @@ Protein-protein interactions (PPIs) are involved with most cellular activities a
     biotools:primaryContact "Otto Manneberg" .
 
 <https://bio.tools/staden> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0196 ;
@@ -453671,7 +481620,7 @@ Protein-protein interactions (PPIs) are involved with most cellular activities a
     biotools:primaryContact "Forum" .
 
 <https://bio.tools/staden_io_lib> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_3071,
@@ -453688,7 +481637,7 @@ Protein-protein interactions (PPIs) are involved with most cellular activities a
     sc:url "http://staden.sourceforge.net/" .
 
 <https://bio.tools/staden_package> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0082,
@@ -453709,8 +481658,30 @@ Protein-protein interactions (PPIs) are involved with most cellular activities a
     sc:url "http://staden.sourceforge.net/" ;
     biotools:primaryContact "Forum" .
 
+<https://bio.tools/staem5> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0099,
+        edam:topic_0605,
+        edam:topic_3170,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1016/J.OMTN.2021.10.012>,
+        "pmcid:PMC8571400",
+        "pubmed:34786208" ;
+    sc:description "A novel computational approachfor accurate prediction of m5C site." ;
+    sc:featureList edam:operation_0417,
+        edam:operation_3927,
+        edam:operation_3937 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "Staem5" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/Cxd-626/Staem5.git" .
+
 <https://bio.tools/stag-cns> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_0797 ;
@@ -453726,7 +481697,7 @@ Protein-protein interactions (PPIs) are involved with most cellular activities a
     biotools:primaryContact "James C. Schnable" .
 
 <https://bio.tools/stager> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203 ;
     sc:citation <https://doi.org/10.1186/s13059-017-1277-0> ;
@@ -453745,7 +481716,7 @@ Protein-protein interactions (PPIs) are involved with most cellular activities a
     biotools:primaryContact "Koen Van den Berge" .
 
 <https://bio.tools/stainedglass> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0769,
@@ -453765,10 +481736,10 @@ Protein-protein interactions (PPIs) are involved with most cellular activities a
 
 <https://bio.tools/stallion> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0121,
@@ -453789,7 +481760,7 @@ Protein-protein interactions (PPIs) are involved with most cellular activities a
     sc:url "http://thegleelab.org/STALLION" .
 
 <https://bio.tools/stam> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0634,
         edam:topic_0659,
@@ -453803,7 +481774,7 @@ Protein-protein interactions (PPIs) are involved with most cellular activities a
     sc:url "http://mir.rnanut.net/stam" .
 
 <https://bio.tools/stamp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0160,
@@ -453826,7 +481797,7 @@ Protein-protein interactions (PPIs) are involved with most cellular activities a
     biotools:primaryContact "Shaun Mahony" .
 
 <https://bio.tools/stamp-3d> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0081,
@@ -453843,7 +481814,7 @@ Protein-protein interactions (PPIs) are involved with most cellular activities a
     sc:url "http://www.compbio.dundee.ac.uk/software.html#3Dstructure" .
 
 <https://bio.tools/stamp-metagenomic> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0654,
@@ -453862,7 +481833,7 @@ Protein-protein interactions (PPIs) are involved with most cellular activities a
     sc:url "http://kiwi.cs.dal.ca/Software/index.php/STAMP" .
 
 <https://bio.tools/stampr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3168 ;
@@ -453878,7 +481849,7 @@ Protein-protein interactions (PPIs) are involved with most cellular activities a
         <https://orcid.org/0000-0003-3064-2090> .
 
 <https://bio.tools/stampy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0622,
@@ -453900,14 +481871,14 @@ Protein-protein interactions (PPIs) are involved with most cellular activities a
 
 <https://bio.tools/stampy_indexer> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3168 ;
@@ -453927,38 +481898,38 @@ Protein-protein interactions (PPIs) are involved with most cellular activities a
 
 <https://bio.tools/stampy_mapper> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Sequence trace" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1932" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1932" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1932" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ] ;
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Sequence trace" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
+            sc:name "Sequence trace" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0622 ;
@@ -453977,7 +481948,7 @@ Protein-protein interactions (PPIs) are involved with most cellular activities a
     biotools:primaryContact "Galaxy Support Team" .
 
 <https://bio.tools/stan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0622,
@@ -454001,7 +481972,7 @@ Protein-protein interactions (PPIs) are involved with most cellular activities a
     biotools:primaryContact "Benedikt Zacher" .
 
 <https://bio.tools/standard-deviation-filter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -454020,7 +481991,7 @@ Protein-protein interactions (PPIs) are involved with most cellular activities a
     biotools:primaryContact "Jan Motl" .
 
 <https://bio.tools/standardized_velvet_assembly_report> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0622,
@@ -454039,7 +482010,7 @@ Protein-protein interactions (PPIs) are involved with most cellular activities a
     biotools:primaryContact "Jeremy Leipzig" .
 
 <https://bio.tools/standep> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0821,
         edam:topic_3172,
@@ -454056,7 +482027,7 @@ Protein-protein interactions (PPIs) are involved with most cellular activities a
     sc:url "https://github.com/LewisLabUCSD/StanDep" .
 
 <https://bio.tools/stanfordmicroarraydb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3365,
@@ -454082,7 +482053,7 @@ Protein-protein interactions (PPIs) are involved with most cellular activities a
     biotools:primaryContact "Catherine A. Ball" .
 
 <https://bio.tools/stanza> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0218,
@@ -454107,7 +482078,7 @@ Protein-protein interactions (PPIs) are involved with most cellular activities a
     sc:url "http://stanza.run/bio" .
 
 <https://bio.tools/stap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0593,
@@ -454129,7 +482100,7 @@ Protein-protein interactions (PPIs) are involved with most cellular activities a
     biotools:primaryContact "STAP Support" .
 
 <https://bio.tools/star> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3308 ;
@@ -454152,7 +482123,7 @@ Protein-protein interactions (PPIs) are involved with most cellular activities a
     biotools:primaryContact "rna-styar team" .
 
 <https://bio.tools/star-fusion> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0114,
         edam:topic_3170 ;
     sc:description "STAR-Fusion, a method that is both fast and accurate in identifying fusion transcripts from RNA-Seq data" ;
@@ -454161,7 +482132,7 @@ Protein-protein interactions (PPIs) are involved with most cellular activities a
     sc:url "https://github.com/STAR-Fusion/STAR-Fusion" .
 
 <https://bio.tools/star-genome-browser> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_3071,
@@ -454180,7 +482151,7 @@ Protein-protein interactions (PPIs) are involved with most cellular activities a
     biotools:primaryContact "Wei Wang" .
 
 <https://bio.tools/star-retinex> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0621,
         edam:topic_3315,
@@ -454196,14 +482167,14 @@ Protein-protein interactions (PPIs) are involved with most cellular activities a
 
 <https://bio.tools/starank> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2082" ;
-            sc:name "Matrix" ;
-            sc:sameAs "http://edamontology.org/data_2082" ] ;
+            sc:additionalType "http://edamontology.org/data_2082" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Matrix" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3523,
@@ -454222,7 +482193,7 @@ Protein-protein interactions (PPIs) are involved with most cellular activities a
     biotools:primaryContact "Juliane Siebourg" .
 
 <https://bio.tools/starbase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0154,
@@ -454243,8 +482214,28 @@ Protein-protein interactions (PPIs) are involved with most cellular activities a
     sc:softwareHelp <http://starbase.sysu.edu.cn/> ;
     sc:url "http://starbase.sysu.edu.cn/" .
 
+<https://bio.tools/starbeast3> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0084,
+        edam:topic_2269,
+        edam:topic_3168 ;
+    sc:citation <https://doi.org/10.1101/2021.10.06.463424> ;
+    sc:description "BEAST 2 based package for Bayesian multispecies coalescent (MSC) analyses using efficient and parallelised MCMC operators." ;
+    sc:featureList edam:operation_0544,
+        edam:operation_0547,
+        edam:operation_0551,
+        edam:operation_2238 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "StarBeast3" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://github.com/rbouckaert/starbeast3" .
+
 <https://bio.tools/starbiotrek> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0204,
@@ -454263,7 +482254,7 @@ Protein-protein interactions (PPIs) are involved with most cellular activities a
     biotools:primaryContact "Claudia Cava" .
 
 <https://bio.tools/starchip> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0659,
@@ -454279,8 +482270,20 @@ Protein-protein interactions (PPIs) are involved with most cellular activities a
     sc:url "https://github.com/LosicLab/STARChip" ;
     biotools:primaryContact "Nicholas K Akers" .
 
+<https://bio.tools/stardust> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:citation <https://doi.org/10.1101/2022.04.27.489655> ;
+    sc:description "A method for the integration of spatial information in spatial transcriptomics data clustering." ;
+    sc:featureList edam:operation_0313 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "Stardust" ;
+    sc:softwareHelp <https://github.com/InfOmics/stardust/blob/master/README.md> ;
+    sc:softwareVersion "1.0" ;
+    sc:url "https://github.com/InfOmics/stardust" .
+
 <https://bio.tools/starfish> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_2269,
@@ -454295,7 +482298,7 @@ Protein-protein interactions (PPIs) are involved with most cellular activities a
     sc:url "http://www.cs.cmu.edu/~ckingsf/software/starfish/" .
 
 <https://bio.tools/starfish-identification> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0140,
         edam:topic_0154,
@@ -454313,7 +482316,7 @@ Protein-protein interactions (PPIs) are involved with most cellular activities a
     sc:url "https://github.com/ntcockroft/STarFish" .
 
 <https://bio.tools/stargazer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_2885,
@@ -454331,8 +482334,31 @@ Protein-protein interactions (PPIs) are involved with most cellular activities a
     sc:url "https://stargazer.gs.washington.edu/stargazerweb/" ;
     biotools:primaryContact "Support" .
 
+<https://bio.tools/stargazer_py> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0121,
+        edam:topic_0154,
+        edam:topic_3298,
+        edam:topic_3336,
+        edam:topic_3373 ;
+    sc:citation <https://doi.org/10.3389/FGENE.2022.868015>,
+        "pmcid:PMC9197487",
+        "pubmed:35711912" ;
+    sc:description "A Hybrid Intelligence Platform for Drug Target Prioritization and Digital Drug Repositioning Using Streamlit." ;
+    sc:featureList edam:operation_3226,
+        edam:operation_3436,
+        edam:operation_4009 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Apache-2.0" ;
+    sc:name "StarGazer" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/AstraZeneca/StarGazer" .
+
 <https://bio.tools/starmapvr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3170,
         edam:topic_3308,
@@ -454350,7 +482376,7 @@ starmap is a web-based VR-enabled tool which combines a 3D scatter plot with sta
     sc:url "https://holab-hku.github.io/starmapVR" .
 
 <https://bio.tools/starmir> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_3125,
@@ -454374,7 +482400,7 @@ starmap is a web-based VR-enabled tool which combines a 3D scatter plot with sta
     biotools:primaryContact "Contact form" .
 
 <https://bio.tools/starpdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0736,
@@ -454387,10 +482413,10 @@ starmap is a web-based VR-enabled tool which combines a 3D scatter plot with sta
         "Mac",
         "Windows" ;
     sc:softwareHelp <http://crdd.osdd.net/raghava/starpdb/help.php> ;
-    sc:url "http://crdd.osdd.net/raghava/starpdb/index.php" .
+    sc:url "http://webs.iiitd.edu.in/raghava/starpdb/" .
 
 <https://bio.tools/starr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3071,
@@ -454409,7 +482435,7 @@ starmap is a web-based VR-enabled tool which combines a 3D scatter plot with sta
     biotools:primaryContact "Benedikt Zacher" .
 
 <https://bio.tools/starrpeaker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_3169,
         edam:topic_3170,
@@ -454435,7 +482461,7 @@ starrpeaker --prefix <prefix for output files> --chromsize <hg38.chrom.sizes> --
     sc:url "http://github.com/gersteinlab/starrpeaker" .
 
 <https://bio.tools/starseed> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Script" ;
     sc:applicationSubCategory edam:topic_0610,
@@ -454457,7 +482483,7 @@ starrpeaker --prefix <prefix for output files> --chromsize <hg38.chrom.sizes> --
     sc:url "https://github.com/GatorSense/STARSEED" .
 
 <https://bio.tools/start-asap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description """Prepare the input directory for 'ASA3P', creating automatically a _config.xls_ file from the reads provided.
 Requires one or more reference files (.gbk recommended) and a directory with FASTQ files (.fq or .fastq, gzipped).
 Metadata can be supplied via command line or with a JSON file.""" ;
@@ -454465,7 +482491,7 @@ Metadata can be supplied via command line or with a JSON file.""" ;
     sc:url "http://github.com/quadram-institute-bioscience/start-asap/" .
 
 <https://bio.tools/start2fold> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0130,
         edam:topic_0593,
         edam:topic_0736,
@@ -454490,7 +482516,7 @@ The database of hydrogen/deuterium exchange data on protein folding and stabilit
     sc:url "http://start2fold.eu" .
 
 <https://bio.tools/startlink> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0114,
         edam:topic_0622,
         edam:topic_3125,
@@ -454505,14 +482531,13 @@ The database of hydrogen/deuterium exchange data on protein folding and stabilit
 
 <https://bio.tools/startscan> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ] ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Nucleic acid sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2070" ;
-            sc:name "Sequence motif (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_2070" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2070" ;
+            sc:name "Sequence motif (nucleic acid)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3511 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btm177> ;
@@ -454528,7 +482553,7 @@ The database of hydrogen/deuterium exchange data on protein folding and stabilit
     sc:url "http://bioinformatics.psb.ugent.be/software/details/StartScan" .
 
 <https://bio.tools/stat-200> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3068 ;
@@ -454541,7 +482566,7 @@ The database of hydrogen/deuterium exchange data on protein folding and stabilit
     sc:url "http://www.biosoft.com/w/stat200.htm" .
 
 <https://bio.tools/stat3in> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0202,
@@ -454563,7 +482588,7 @@ The database of hydrogen/deuterium exchange data on protein folding and stabilit
     sc:url "https://webs.iiitd.edu.in/raghava/stat3in/" .
 
 <https://bio.tools/statcheck> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2269 ;
     sc:citation <https://doi.org/10.1002/JRSM.1408>,
         "pmcid:PMC7540394",
@@ -454579,14 +482604,14 @@ statcheck is a free, open source R package that can be used to automatically ext
 
 <https://bio.tools/stategra> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2082" ;
-            sc:name "Matrix" ;
-            sc:sameAs "http://edamontology.org/data_2082" ] ;
+            sc:additionalType "http://edamontology.org/data_2082" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Matrix" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1636" ;
-            sc:name "Heat map" ;
-            sc:sameAs "http://edamontology.org/data_1636" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1636" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Heat map" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3366,
@@ -454607,7 +482632,7 @@ statcheck is a free, open source R package that can be used to automatically ext
         "Patricia Sebastián-León" .
 
 <https://bio.tools/statepaintr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0621,
         edam:topic_3169,
@@ -454625,7 +482650,7 @@ StatHub - consistent rules-based chromatin state annotations across Roadmap, ENC
     sc:url "http://www.statehub.org" .
 
 <https://bio.tools/statsigma> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1109/TCBB.2007.70271>,
@@ -454636,8 +482661,28 @@ StatHub - consistent rules-based chromatin state annotations across Roadmap, ENC
     sc:operatingSystem "Linux" ;
     sc:url "http://bio.cs.washington.edu/software/alignment_quality" .
 
+<https://bio.tools/statspro> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0080,
+        edam:topic_0121,
+        edam:topic_0621,
+        edam:topic_3520 ;
+    sc:citation <https://doi.org/10.1016/J.JPROT.2021.104386>,
+        "pubmed:34600153" ;
+    sc:description "Systematic integration and evaluation of statistical approaches for detecting differential expression in label-free quantitative proteomics." ;
+    sc:featureList edam:operation_3557,
+        edam:operation_3799 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "StatsPro" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/YanglabWCH/StatsPro/" .
+
 <https://bio.tools/stattag> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0605,
         edam:topic_2269,
         edam:topic_3303 ;
@@ -454655,7 +482700,7 @@ StatTag is a free plug-in for conducting reproducible research and creating dyna
     sc:url "https://github.com/StatTag/StatTag" .
 
 <https://bio.tools/stattarget> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3172,
@@ -454677,7 +482722,7 @@ StatTag is a free plug-in for conducting reproducible research and creating dyna
     biotools:primaryContact "Hemi Luan" .
 
 <https://bio.tools/stavrox> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -454692,8 +482737,31 @@ StatTag is a free plug-in for conducting reproducible research and creating dyna
     sc:softwareHelp <https://www.stavrox.com/qug.htm> ;
     sc:url "http://www.stavrox.com/" .
 
+<https://bio.tools/stdeconvolve> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_2229,
+        edam:topic_3170,
+        edam:topic_3308,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.1038/S41467-022-30033-Z>,
+        "pmcid:PMC9055051",
+        "pubmed:35487922" ;
+    sc:description "Reference-free cell type deconvolution of multi-cellular pixel-resolution spatially resolved transcriptomics data." ;
+    sc:featureList edam:operation_0313,
+        edam:operation_0314,
+        edam:operation_3629 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "STdeconvolve" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://bioconductor.org/packages/devel/bioc/manuals/STdeconvolve/man/STdeconvolve.pdf> ;
+    sc:url "https://github.com/JEFworks-Lab/STdeconvolve" .
+
 <https://bio.tools/steadycellphenotype> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
@@ -454712,7 +482780,7 @@ StatTag is a free plug-in for conducting reproducible research and creating dyna
     sc:url "https://steadycellphenotype.github.io/" .
 
 <https://bio.tools/steak> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0781,
@@ -454730,8 +482798,52 @@ StatTag is a free plug-in for conducting reproducible research and creating dyna
     biotools:primaryContact "Cindy Santander",
         "Philippe Gambron" .
 
+<https://bio.tools/stecfinder> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0196,
+        edam:topic_2830,
+        edam:topic_3174,
+        edam:topic_3293,
+        edam:topic_3837 ;
+    sc:citation <https://doi.org/10.3389/FCIMB.2021.772574>,
+        "pmcid:PMC8785982",
+        "pubmed:35083165" ;
+    sc:description "Clustering and Serotyping of Shigatoxin producing E. coli (STEC) using genomic cluster specific markers" ;
+    sc:featureList edam:operation_0525,
+        edam:operation_0553,
+        edam:operation_2421,
+        edam:operation_3227,
+        edam:operation_3432 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "STECFinder" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/LanLab/STECFinder" .
+
+<https://bio.tools/steer_ndetect> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Plug-in" ;
+    sc:applicationSubCategory edam:topic_0769,
+        edam:topic_2229,
+        edam:topic_3382 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC270>,
+        "pmcid:PMC9154219",
+        "pubmed:35435214" ;
+    sc:description "Fast 2D Template Detection with Accurate Orientation Estimation." ;
+    sc:featureList edam:operation_3443 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "Steer nDetect" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/Biomedical-Imaging-Group/Steer-n-Detect" .
+
 <https://bio.tools/stegarmory> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3068,
@@ -454746,7 +482858,7 @@ StegArmory is an image-based steganography utility that can be used to embed and
     sc:url "https://github.com/MarkoH17/StegArmory" .
 
 <https://bio.tools/stego> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3053,
         edam:topic_3056,
@@ -454764,7 +482876,7 @@ StegArmory is an image-based steganography utility that can be used to embed and
     biotools:primaryContact "Daniel Schlauch" .
 
 <https://bio.tools/steinernet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0203,
@@ -454782,7 +482894,7 @@ StegArmory is an image-based steganography utility that can be used to embed and
     sc:url "http://fraenkel.mit.edu/steinernet" .
 
 <https://bio.tools/stelar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0194,
         edam:topic_2269 ;
@@ -454799,7 +482911,7 @@ Species tree estimation is frequently based on phylogenomic approaches that use
     sc:url "https://islamazhar.github.io/STELAR/" .
 
 <https://bio.tools/stellar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3572 ;
@@ -454816,7 +482928,7 @@ Species tree estimation is frequently based on phylogenomic approaches that use
     sc:url "http://www.seqan.de/projects/stellar/" .
 
 <https://bio.tools/stells> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3053,
@@ -454833,14 +482945,12 @@ Species tree estimation is frequently based on phylogenomic approaches that use
 
 <https://bio.tools/stemcellnet> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1025" ;
-            sc:name "Gene identifier" ;
-            sc:sameAs "http://edamontology.org/data_1025" ] ;
+            sc:additionalType "http://edamontology.org/data_1025" ;
+            sc:name "Gene identifier" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:name "Pathway or network" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3307,
         edam:topic_3344 ;
@@ -454861,10 +482971,9 @@ Species tree estimation is frequently based on phylogenomic approaches that use
 
 <https://bio.tools/stemchecker> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1025" ;
-            sc:name "Gene identifier" ;
-            sc:sameAs "http://edamontology.org/data_1025" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1025" ;
+            sc:name "Gene identifier" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3053,
         edam:topic_3307,
@@ -454886,7 +482995,7 @@ Species tree estimation is frequently based on phylogenomic approaches that use
     biotools:primaryContact <http://orcid.org/0000-0002-6245-8071> .
 
 <https://bio.tools/stemi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3335,
         edam:topic_3421,
@@ -454910,7 +483019,7 @@ Species tree estimation is frequently based on phylogenomic approaches that use
     sc:url "https://bzxzmu.shinyapps.io/STEMI-with-Hyperuricemia-intrahospital-mortality/" .
 
 <https://bio.tools/stencil> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -454932,7 +483041,7 @@ Species tree estimation is frequently based on phylogenomic approaches that use
     sc:url "http://pughlab.mbg.cornell.edu/stencil/" .
 
 <https://bio.tools/step3> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0798,
         edam:topic_3299,
@@ -454948,7 +483057,7 @@ Species tree estimation is frequently based on phylogenomic approaches that use
     biotools:primaryContact <https://orcid.org/0000-0002-0102-7884> .
 
 <https://bio.tools/stepgram> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0654 ;
     sc:citation <https://doi.org/10.1089/cmb.2006.13.215> ;
@@ -454961,7 +483070,7 @@ Species tree estimation is frequently based on phylogenomic approaches that use
     sc:url "http://bioinfo.cs.technion.ac.il/stepgram/" .
 
 <https://bio.tools/stepnorm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3512,
@@ -454980,7 +483089,7 @@ Species tree estimation is frequently based on phylogenomic approaches that use
     biotools:primaryContact "Yuanyuan Xiao" .
 
 <https://bio.tools/stepp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0154,
@@ -454995,7 +483104,7 @@ Species tree estimation is frequently based on phylogenomic approaches that use
     sc:url "http://cbb.pnnl.gov/portal/software/stepp.html" .
 
 <https://bio.tools/steps> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2259,
@@ -455013,7 +483122,7 @@ Species tree estimation is frequently based on phylogenomic approaches that use
     biotools:primaryContact "Support" .
 
 <https://bio.tools/stepwisecm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2640 ;
@@ -455031,7 +483140,7 @@ Species tree estimation is frequently based on phylogenomic approaches that use
     biotools:primaryContact "Askar Obulkasim" .
 
 <https://bio.tools/stereo3d> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0130,
@@ -455050,7 +483159,7 @@ Visualization in three-dimensional (3D) space is a standard and critical process
     sc:url "https://github.com/bioinfoDZ/Stereo3D" .
 
 <https://bio.tools/stereogene> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0622,
@@ -455066,7 +483175,7 @@ Visualization in three-dimensional (3D) space is a standard and critical process
     biotools:primaryContact "Elena Stavrovskaya" .
 
 <https://bio.tools/steroidxtract> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite",
         "Workbench" ;
     sc:applicationSubCategory edam:topic_0154,
@@ -455086,7 +483195,7 @@ Visualization in three-dimensional (3D) space is a standard and critical process
     sc:url "https://github.com/HuanLab/SteroidXtract" .
 
 <https://bio.tools/sti-gmas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0781,
         edam:topic_2259,
@@ -455106,18 +483215,18 @@ Visualization in three-dimensional (3D) space is a standard and critical process
 
 <https://bio.tools/stig> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ] ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:encodingFormat "http://edamontology.org/format_2200" ;
+            sc:name "Nucleic acid sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3494" ;
-            sc:name "DNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3494" ],
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "DNA sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2955" ;
-            sc:name "Sequence report" ;
-            sc:sameAs "http://edamontology.org/data_2955" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2955" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Sequence report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2830 ;
     sc:citation <https://doi.org/10.1101/2020.02.28.969469> ;
@@ -455133,7 +483242,7 @@ Visualization in three-dimensional (3D) space is a standard and critical process
     sc:url "https://github.com/Benjamin-Vincent-Lab/stig" .
 
 <https://bio.tools/stimuliapp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0798,
         edam:topic_3382 ;
     sc:citation <https://doi.org/10.3758/S13428-020-01491-4>,
@@ -455148,7 +483257,7 @@ With a simple system of menus, you can design and run tests to assess perceptual
     sc:url "http://www.stimuliapp.com" .
 
 <https://bio.tools/sting_millenium> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0081,
@@ -455178,7 +483287,7 @@ With a simple system of menus, you can design and run tests to assess perceptual
     biotools:primaryContact "Neshich G." .
 
 <https://bio.tools/stingray> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0622,
@@ -455199,7 +483308,7 @@ With a simple system of menus, you can design and run tests to assess perceptual
     biotools:primaryContact "Alberto MR Dávila" .
 
 <https://bio.tools/stir> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3315,
         edam:topic_3384,
@@ -455218,38 +483327,38 @@ This work demonstrates how computational and physical modelling of the positron
 
 <https://bio.tools/stitch> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0990" ;
-            sc:name "Compound name" ;
-            sc:sameAs "http://edamontology.org/data_0990" ],
+            sc:additionalType "http://edamontology.org/data_2299" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Gene name" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1463" ;
-            sc:name "Small molecule structure" ;
-            sc:sameAs "http://edamontology.org/data_1463" ],
+            sc:additionalType "http://edamontology.org/data_1463" ;
+            sc:encodingFormat "http://edamontology.org/format_3468" ;
+            sc:name "Small molecule structure" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2299" ;
-            sc:name "Gene name" ;
-            sc:sameAs "http://edamontology.org/data_2299" ],
+            sc:additionalType "http://edamontology.org/data_1009" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Protein name" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ],
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_2546" ;
+            sc:name "Protein sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1009" ;
-            sc:name "Protein name" ;
-            sc:sameAs "http://edamontology.org/data_1009" ] ;
+            sc:additionalType "http://edamontology.org/data_0990" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Compound name" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ],
+            sc:additionalType "http://edamontology.org/data_2042" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Evidence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2042" ;
-            sc:name "Evidence" ;
-            sc:sameAs "http://edamontology.org/data_2042" ],
+            sc:additionalType "http://edamontology.org/data_0954" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Database cross-mapping" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0954" ;
-            sc:name "Database cross-mapping" ;
-            sc:sameAs "http://edamontology.org/data_0954" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Pathway or network" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Database portal",
         "Web application" ;
@@ -455293,14 +483402,14 @@ This work demonstrates how computational and physical modelling of the positron
 
 <https://bio.tools/stitchprofiles> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3494" ;
-            sc:name "DNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3494" ] ;
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "DNA sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2958" ;
-            sc:name "Nucleic acid melting curve" ;
-            sc:sameAs "http://edamontology.org/data_2958" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2958" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Nucleic acid melting curve" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0654 ;
     sc:author "Eivind Hovig",
@@ -455326,8 +483435,31 @@ This work demonstrates how computational and physical modelling of the positron
     sc:url "http://stitchprofiles.uio.no/" ;
     biotools:primaryContact "Eivind Hovig" .
 
+<https://bio.tools/stitchr> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0621,
+        edam:topic_2830,
+        edam:topic_3168,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.1093/nar/gkac190>,
+        "pubmed:35325179" ;
+    sc:description "Stitching coding TCR nucleotide sequences from V/J/CDR3 information." ;
+    sc:featureList edam:operation_0232,
+        edam:operation_3192,
+        edam:operation_3196,
+        edam:operation_3227 ;
+    sc:isAccessibleForFree true ;
+    sc:license "BSD-3-Clause" ;
+    sc:name "Stitchr" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/JamieHeather/stitchr" .
+
 <https://bio.tools/stjudecloud> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Bioinformatics portal",
         "Suite",
         "Web application",
@@ -455352,7 +483484,7 @@ St. Jude Cloud is a pediatric catastrophic disease data sharing ecosystem create
     sc:url "https://www.stjude.cloud" .
 
 <https://bio.tools/stk> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0196,
@@ -455366,7 +483498,7 @@ St. Jude Cloud is a pediatric catastrophic disease data sharing ecosystem create
     biotools:primaryContact <https://orcid.org/0000-0001-7683-7630> .
 
 <https://bio.tools/stlearn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2229,
         edam:topic_2640,
@@ -455384,7 +483516,7 @@ a downstream analysis toolkit for Spatial Transcriptomics data.""" ;
     sc:url "https://stlearn.readthedocs.io/" .
 
 <https://bio.tools/stmf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -455399,7 +483531,7 @@ a downstream analysis toolkit for Spatial Transcriptomics data.""" ;
     sc:url "https://github.com/Ejmric/STMF" .
 
 <https://bio.tools/stmove> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0610 ;
     sc:citation <https://doi.org/10.1101/758987> ;
     sc:description "Exploratory movement analysis and report building with R package stmove | Abstract Background As GPS tags and data loggers have become lighter, cheaper, and longer-lasting, there has been a growing influx of data on animal movement. Simultaneously, methods of analyses and software to apply such methods to movement data have expanded dramatically. Even so, for many interdisciplinary researchers and managers without familiarity with the field of movement ecology and the open-source tools that have been developed, the analysis of movement data has remained an overwhelming challenge. Description Here we present stmove , an R package designed to take individual relocation data and generate a visually rich report containing a set of preliminary results that ecologists and managers can use to guide further exploration of their data" ;
@@ -455407,8 +483539,32 @@ a downstream analysis toolkit for Spatial Transcriptomics data.""" ;
     sc:name "stmove" ;
     sc:url "https://github.com/dpseidel/stmove" .
 
+<https://bio.tools/stoat> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_3050,
+        edam:topic_3299,
+        edam:topic_3500,
+        edam:topic_3697,
+        edam:topic_3855 ;
+    sc:citation <https://doi.org/10.1371/JOURNAL.PBIO.3001460>,
+        "pmcid:PMC8629388",
+        "pubmed:34780461" ;
+    sc:description "Welcome to Stoat, the environmental data annotation tool, a data fusion engine design to annotate biodiversity records with environmental remote sensing products. This tutorial provides a step-by-step guide to using the tools to explore, upload, manage, annotate, and download data." ;
+    sc:featureList edam:operation_2422,
+        edam:operation_3435,
+        edam:operation_3659 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Other" ;
+    sc:name "STOAT" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://mol.org/stoat" .
+
 <https://bio.tools/stochdecomp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_2259,
         edam:topic_2269,
@@ -455424,7 +483580,7 @@ a downstream analysis toolkit for Spatial Transcriptomics data.""" ;
     sc:url "http://sourceforge.net/p/stochdecomp/wiki/Home/" .
 
 <https://bio.tools/stochprofml> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0634,
@@ -455442,7 +483598,7 @@ a downstream analysis toolkit for Spatial Transcriptomics data.""" ;
     sc:url "https://CRAN.R-project.org/package=stochprofML" .
 
 <https://bio.tools/ston> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0160,
@@ -455458,7 +483614,7 @@ a downstream analysis toolkit for Spatial Transcriptomics data.""" ;
     sc:url "http://bs.ipm.ir/softwares/ston/" .
 
 <https://bio.tools/stonemod> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
         edam:topic_0749,
@@ -455477,7 +483633,7 @@ StoneMod is the database of kidney stone (nephrolithiasis or urolithiasis) modul
     sc:url "https://www.stonemod.org" .
 
 <https://bio.tools/stonkgs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0218,
         edam:topic_2269,
@@ -455495,7 +483651,7 @@ StoneMod is the database of kidney stone (nephrolithiasis or urolithiasis) modul
     sc:url "https://huggingface.co/stonkgs/stonkgs-150k" .
 
 <https://bio.tools/stoptox> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2258,
         edam:topic_2840,
         edam:topic_3343,
@@ -455509,7 +483665,7 @@ The STopTox app is a fast, reliable, and user-friendly tool available as an alte
     sc:url "https://stoptox.mml.unc.edu/" .
 
 <https://bio.tools/storefish> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0621,
         edam:topic_3050,
@@ -455528,7 +483684,7 @@ Teleost fishes show the most outstanding reproductive diversity of all vertebrat
     sc:url "http://www.storefish.org" .
 
 <https://bio.tools/storm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -455543,7 +483699,7 @@ Teleost fishes show the most outstanding reproductive diversity of all vertebrat
     sc:url "http://www.biw.kuleuven.be/logt/STORM.htm" .
 
 <https://bio.tools/storm-based-relative-localization-analysis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3318,
@@ -455563,7 +483719,7 @@ Teleost fishes show the most outstanding reproductive diversity of all vertebrat
     biotools:primaryContact "Rengasayee Veeraraghavan" .
 
 <https://bio.tools/storm-net> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0593,
         edam:topic_3384,
         edam:topic_3474 ;
@@ -455577,7 +483733,7 @@ Teleost fishes show the most outstanding reproductive diversity of all vertebrat
     sc:url "https://github.com/yoterel/STORM-Net" .
 
 <https://bio.tools/storm-riboregulator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0632,
         edam:topic_3303,
         edam:topic_3810,
@@ -455597,14 +483753,14 @@ This repository provides code for Valeri, Collins, et al. 2019.""" ;
 
 <https://bio.tools/stpeter> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0896" ;
-            sc:name "Protein report" ;
-            sc:sameAs "http://edamontology.org/data_0896" ] ;
+            sc:additionalType "http://edamontology.org/data_0896" ;
+            sc:encodingFormat "http://edamontology.org/format_3747" ;
+            sc:name "Protein report" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0896" ;
-            sc:name "Protein report" ;
-            sc:sameAs "http://edamontology.org/data_0896" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0896" ;
+            sc:encodingFormat "http://edamontology.org/format_3747" ;
+            sc:name "Protein report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -455626,7 +483782,7 @@ This repository provides code for Valeri, Collins, et al. 2019.""" ;
     sc:url "http://tppms.org" .
 
 <https://bio.tools/stplus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3170,
@@ -455644,7 +483800,7 @@ This repository provides code for Valeri, Collins, et al. 2019.""" ;
     biotools:primaryContact "Rui Jiang" .
 
 <https://bio.tools/stpm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3299,
@@ -455665,7 +483821,7 @@ This repository provides code for Valeri, Collins, et al. 2019.""" ;
     biotools:primaryContact "Ilya Y. Zhbannikov" .
 
 <https://bio.tools/stra-net> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602 ;
     sc:citation <https://doi.org/10.1109/TIP.2019.2936112>,
         "pubmed:31449021" ;
@@ -455674,7 +483830,7 @@ This repository provides code for Valeri, Collins, et al. 2019.""" ;
     sc:url "https://github.com/ashleylqx/STRA-Net" .
 
 <https://bio.tools/stradwin> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3300,
@@ -455693,7 +483849,7 @@ This repository provides code for Valeri, Collins, et al. 2019.""" ;
     biotools:primaryContact "D. Thurtle" .
 
 <https://bio.tools/straglr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2885,
@@ -455719,7 +483875,7 @@ This repository provides code for Valeri, Collins, et al. 2019.""" ;
     biotools:primaryContact <https://orcid.org/0000-0003-0950-7839> .
 
 <https://bio.tools/strainflair> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0102,
@@ -455738,24 +483894,44 @@ StrainFLAIR (STRAIN-level proFiLing using vArIation gRaph) is a tool for strain
     sc:name "StrainFLAIR" ;
     sc:url "http://github.com/kevsilva/StrainFLAIR" .
 
+<https://bio.tools/strainge> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_3174,
+        edam:topic_3277,
+        edam:topic_3697,
+        edam:topic_3837 ;
+    sc:citation <https://doi.org/10.1186/S13059-022-02630-0>,
+        "pmcid:PMC8900328",
+        "pubmed:35255937" ;
+    sc:description "A toolkit to track and characterize low-abundance strains in complex microbial communities." ;
+    sc:featureList edam:operation_3227,
+        edam:operation_3472,
+        edam:operation_3840 ;
+    sc:isAccessibleForFree true ;
+    sc:license "BSD-3-Clause" ;
+    sc:name "StrainGE" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://github.com/broadinstitute/.github/blob/develop/CODE_OF_CONDUCT.md> ;
+    sc:url "https://github.com/broadinstitute/strainge" .
+
 <https://bio.tools/straininfo> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2912" ;
-            sc:name "Strain accession" ;
-            sc:sameAs "http://edamontology.org/data_2912" ] ;
+            sc:additionalType "http://edamontology.org/data_2912" ;
+            sc:name "Strain accession" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2912" ;
-            sc:name "Strain accession" ;
-            sc:sameAs "http://edamontology.org/data_2912" ],
+            sc:additionalType "http://edamontology.org/data_2912" ;
+            sc:name "Strain accession" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2526" ;
-            sc:name "Text data" ;
-            sc:sameAs "http://edamontology.org/data_2526" ],
+            sc:additionalType "http://edamontology.org/data_0850" ;
+            sc:name "Sequence set" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0850" ;
-            sc:name "Sequence set" ;
-            sc:sameAs "http://edamontology.org/data_0850" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2526" ;
+            sc:name "Text data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_3473 ;
@@ -455770,8 +483946,78 @@ StrainFLAIR (STRAIN-level proFiLing using vArIation gRaph) is a tool for strain
     sc:softwareHelp <http://www.straininfo.net/docs/doku.php?id=help> ;
     sc:url "http://www.straininfo.net/" .
 
+<https://bio.tools/strainline> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0196,
+        edam:topic_0622,
+        edam:topic_3168 ;
+    sc:citation <https://doi.org/10.1186/S13059-021-02587-6>,
+        "pmcid:PMC8771625",
+        "pubmed:35057847" ;
+    sc:description "Full-length de novo viral haplotype reconstruction from noisy long reads." ;
+    sc:featureList edam:operation_0487,
+        edam:operation_0524,
+        edam:operation_0525,
+        edam:operation_3192,
+        edam:operation_3644 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "Strainline" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/HaploKit/Strainline" .
+
+<https://bio.tools/strainscan> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0632,
+        edam:topic_2885,
+        edam:topic_3174,
+        edam:topic_3697,
+        edam:topic_3837 ;
+    sc:citation <https://doi.org/10.1101/2022.01.26.477962> ;
+    sc:description "Accurate strain-level microbiome composition analysis from short reads." ;
+    sc:featureList edam:operation_3196,
+        edam:operation_3435,
+        edam:operation_3472 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "StrainScan" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/liaoherui/strainScan" .
+
+<https://bio.tools/strainxpress> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_0196,
+        edam:topic_3174,
+        edam:topic_3697,
+        edam:topic_3837 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAC543>,
+        "pubmed:35776122" ;
+    sc:description "StrainXpress is a de novo assembly method which base on overlap-layout-consensus (OLC) paradigm and can fast and accurately assemble high complexity metagenome sequencing data at strain resolution." ;
+    sc:featureList edam:operation_0310,
+        edam:operation_3219,
+        edam:operation_3472 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "StrainXpress" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/HaploKit/StrainXpress" .
+
 <https://bio.tools/straitrazor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0625,
@@ -455790,7 +484036,7 @@ STRait Razor Online (SRO) serves as the user-interface (UI) for analyzing sequen
     sc:url "https://www.unthsc.edu/straitrazor" .
 
 <https://bio.tools/strand_ngs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_3168,
@@ -455815,7 +484061,7 @@ STRait Razor Online (SRO) serves as the user-interface (UI) for analyzing sequen
         "Strand NGS Support" .
 
 <https://bio.tools/strap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0097,
@@ -455837,7 +484083,7 @@ STRait Razor Online (SRO) serves as the user-interface (UI) for analyzing sequen
     biotools:primaryContact "Christoph Gille" .
 
 <https://bio.tools/straw> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0102,
@@ -455859,7 +484105,7 @@ STRait Razor Online (SRO) serves as the user-interface (UI) for analyzing sequen
     biotools:primaryContact "Liang Liu" .
 
 <https://bio.tools/strawberry> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3308,
         edam:topic_3512 ;
@@ -455872,7 +484118,7 @@ STRait Razor Online (SRO) serves as the user-interface (UI) for analyzing sequen
     sc:url "https://github.com/ruolin/strawberry" .
 
 <https://bio.tools/stream> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0204,
@@ -455891,7 +484137,7 @@ STRait Razor Online (SRO) serves as the user-interface (UI) for analyzing sequen
     biotools:primaryContact "Denis C. Bauer" .
 
 <https://bio.tools/streamer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3071 ;
@@ -455909,7 +484155,7 @@ STRait Razor Online (SRO) serves as the user-interface (UI) for analyzing sequen
     biotools:primaryContact "Martin Morgan" .
 
 <https://bio.tools/strelka> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0199 ;
     sc:citation "pubmed:22581179" ;
@@ -455922,7 +484168,7 @@ STRait Razor Online (SRO) serves as the user-interface (UI) for analyzing sequen
     biotools:primaryContact "Christopher T. Saunders" .
 
 <https://bio.tools/streme> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0160,
@@ -455941,7 +484187,7 @@ STRait Razor Online (SRO) serves as the user-interface (UI) for analyzing sequen
     biotools:primaryContact <https://orcid.org/0000-0002-7018-9342> .
 
 <https://bio.tools/streptomedb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3070,
         edam:topic_3336,
@@ -455956,7 +484202,7 @@ STRait Razor Online (SRO) serves as the user-interface (UI) for analyzing sequen
     sc:url "http://www.pharmbioinf.uni-freiburg.de/streptomedb" .
 
 <https://bio.tools/stretch> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_2885,
@@ -455978,22 +484224,18 @@ Dashnow, Harriet, Monkol Lek, Belinda Phipson, Andreas Halman, Simon Sadedin, An
 
 <https://bio.tools/stretcher> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ],
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ],
+            sc:additionalType "http://edamontology.org/data_0874" ;
+            sc:name "Comparison matrix" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0874" ;
-            sc:name "Comparison matrix" ;
-            sc:sameAs "http://edamontology.org/data_0874" ] ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1381" ;
-            sc:name "Sequence alignment (pair)" ;
-            sc:sameAs "http://edamontology.org/data_1381" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1381" ;
+            sc:name "Sequence alignment (pair)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0097 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -456023,7 +484265,7 @@ Dashnow, Harriet, Monkol Lek, Belinda Phipson, Andreas Halman, Simon Sadedin, An
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/stretcher.html" .
 
 <https://bio.tools/stretcher-api-ebi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1093/nar/gkv1352> ;
@@ -456039,23 +484281,22 @@ Dashnow, Harriet, Monkol Lek, Belinda Phipson, Andreas Halman, Simon Sadedin, An
 
 <https://bio.tools/stretcher-ebi> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1381" ;
-            sc:name "Sequence alignment (pair)" ;
-            sc:sameAs "http://edamontology.org/data_1381" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1381" ;
+            sc:name "Sequence alignment (pair)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:author "EMBOSS",
-        "Web Production" ;
-    sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2> ;
+        "Job Dispatcher" ;
+    sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
+        <https://doi.org/10.1093/nar/gkac240> ;
     sc:description "Improved version of the Needleman-Wunsch algorithm that allows rapid global alignment of two larger sequences." ;
     sc:featureList edam:operation_0491,
         edam:operation_0496 ;
-    sc:name "stretcher (EBI)" ;
+    sc:name "Stretcher (EBI)" ;
     sc:operatingSystem "Linux",
         "Mac",
         "Windows" ;
@@ -456064,10 +484305,10 @@ Dashnow, Harriet, Monkol Lek, Belinda Phipson, Andreas Halman, Simon Sadedin, An
         <http://www.ebi.ac.uk/about/terms-of-use> ;
     sc:softwareVersion "1" ;
     sc:url "http://www.ebi.ac.uk/Tools/psa/emboss_stretcher/" ;
-    biotools:primaryContact "Web Production" .
+    biotools:primaryContact "Job Dispatcher Team" .
 
 <https://bio.tools/stretcher_ws_husar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2> ;
@@ -456079,7 +484320,7 @@ Dashnow, Harriet, Monkol Lek, Belinda Phipson, Andreas Halman, Simon Sadedin, An
     sc:url "http://genius.embnet.dkfz-heidelberg.de/menu/hobit/embdoc/stretcher.html" .
 
 <https://bio.tools/stretching_dna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0176,
         edam:topic_0654,
@@ -456099,18 +484340,18 @@ Dashnow, Harriet, Monkol Lek, Belinda Phipson, Andreas Halman, Simon Sadedin, An
 
 <https://bio.tools/strictlyincludegff> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2305" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2305" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1975" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0622,
@@ -456129,7 +484370,7 @@ Dashnow, Harriet, Monkol Lek, Belinda Phipson, Andreas Halman, Simon Sadedin, An
     biotools:primaryContact "Galaxy Support Team" .
 
 <https://bio.tools/stride> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_1317,
@@ -456148,7 +484389,7 @@ Dashnow, Harriet, Monkol Lek, Belinda Phipson, Andreas Halman, Simon Sadedin, An
     sc:url "http://webclu.bio.wzw.tum.de/stride/" .
 
 <https://bio.tools/stride-assembly> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_2269,
@@ -456162,7 +484403,7 @@ Dashnow, Harriet, Monkol Lek, Belinda Phipson, Andreas Halman, Simon Sadedin, An
     sc:url "https://github.com/ythuang0522/StriDe" .
 
 <https://bio.tools/stride_deconvolution> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_3170,
@@ -456180,7 +484421,7 @@ Dashnow, Harriet, Monkol Lek, Belinda Phipson, Andreas Halman, Simon Sadedin, An
     sc:url "https://github.com/DongqingSun96/STRIDE" .
 
 <https://bio.tools/strider> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0152,
         edam:topic_0153,
         edam:topic_0154,
@@ -456197,7 +484438,7 @@ STRIDER, Steric hindrance estimater, is a web server which can estimate and repo
     sc:url "http://www.iith.ac.in/strider/" .
 
 <https://bio.tools/strike> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0097,
@@ -456212,7 +484453,7 @@ STRIDER, Steric hindrance estimater, is a web server which can estimate and repo
     sc:url "http://www.tcoffee.org/Projects/strike/index.html" .
 
 <https://bio.tools/string> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0128 ;
@@ -456228,7 +484469,7 @@ STRIDER, Steric hindrance estimater, is a web server which can estimate and repo
     sc:url "http://string-db.org/" .
 
 <https://bio.tools/stringapp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0128 ;
     sc:citation <https://doi.org/10.1093/nar/gkw937>,
@@ -456249,7 +484490,7 @@ STRIDER, Steric hindrance estimater, is a web server which can estimate and repo
         "Lars Juhl Jensen" .
 
 <https://bio.tools/stringdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0078,
@@ -456270,7 +484511,7 @@ STRIDER, Steric hindrance estimater, is a web server which can estimate and repo
     biotools:primaryContact "Alexander Roth" .
 
 <https://bio.tools/stringgaussnet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0602,
@@ -456286,7 +484527,7 @@ STRIDER, Steric hindrance estimater, is a web server which can estimate and repo
     sc:url "https://cran.r-project.org/web/packages/stringgaussnet/" .
 
 <https://bio.tools/stringgraph> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_2269,
@@ -456300,7 +484541,7 @@ STRIDER, Steric hindrance estimater, is a web server which can estimate and repo
     sc:url "http://www.cs.tau.ac.il/~bchor/StringGraph/" .
 
 <https://bio.tools/stringmlst> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0654,
@@ -456318,7 +484559,7 @@ STRIDER, Steric hindrance estimater, is a web server which can estimate and repo
     biotools:primaryContact "Support" .
 
 <https://bio.tools/stringtie> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3308 ;
@@ -456335,10 +484576,10 @@ STRIDER, Steric hindrance estimater, is a web server which can estimate and repo
 
 <https://bio.tools/stripy> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1383" ;
-            sc:name "Nucleic acid sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_1383" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1383" ;
+            sc:encodingFormat "http://edamontology.org/format_3462" ;
+            sc:name "Nucleic acid sequence alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Database portal",
         "Desktop application" ;
@@ -456346,8 +484587,9 @@ STRIDER, Steric hindrance estimater, is a web server which can estimate and repo
         edam:topic_2533,
         edam:topic_2885,
         edam:topic_3071 ;
-    sc:citation <https://doi.org/10.1101/2021.06.13.448220> ;
-    sc:description "A graphical application for enhanced genotyping of pathogenic short tandem repeats in sequencing data" ;
+    sc:citation <https://doi.org/10.1002/humu.24382>,
+        "pubmed:35395114" ;
+    sc:description "A graphical application for detecting known pathogenic short tandem repeats in sequencing data" ;
     sc:featureList edam:operation_0564,
         edam:operation_3196 ;
     sc:isAccessibleForFree true ;
@@ -456360,7 +484602,7 @@ STRIDER, Steric hindrance estimater, is a web server which can estimate and repo
     sc:url "https://stripy.org" .
 
 <https://bio.tools/strling> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "STRling (pronounced like “sterling”) is a method to detect large STR expansions from short-read sequencing data. It is capable of detecting novel STR expansions, that is expansions where there is no STR in the reference genome at that position (or a different repeat unit from what is in the reference). It can also detect STR expansions that are annotated in the reference genome. STRling uses kmer counting to recover mis-mapped STR reads. It then uses soft-clipped reads to precisely discover the position of the STR expansion in the reference genome." ;
     sc:featureList edam:operation_0379 ;
     sc:name "STRling" ;
@@ -456368,7 +484610,7 @@ STRIDER, Steric hindrance estimater, is a web server which can estimate and repo
     sc:url "https://github.com/quinlan-lab/STRling" .
 
 <https://bio.tools/strms> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099 ;
     sc:citation <https://doi.org/10.1089/cmb.2007.0061> ;
@@ -456385,7 +484627,7 @@ STRIDER, Steric hindrance estimater, is a web server which can estimate and repo
     sc:url "http://www.cs.bgu.ac.il/~vaksler/STRMS.htm" .
 
 <https://bio.tools/strobemers> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -456402,7 +484644,7 @@ A repository for generating strobemers and evaluation.""" ;
     sc:url "https://github.com/ksahlin/strobemers" .
 
 <https://bio.tools/stroma4> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3063,
@@ -456421,7 +484663,7 @@ A repository for generating strobemers and evaluation.""" ;
     biotools:primaryContact "Sadiq Saleh" .
 
 <https://bio.tools/strong> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3168,
@@ -456443,7 +484685,7 @@ A repository for generating strobemers and evaluation.""" ;
     sc:url "https://github.com/chrisquince/STRONG" .
 
 <https://bio.tools/strongestpath> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0749,
         edam:topic_2259,
@@ -456464,7 +484706,7 @@ StrongestPath is a Cytoscape 3 application that enables to look for one or more
     sc:url "http://github.com/zmousavian/StrongestPath" .
 
 <https://bio.tools/strscan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3673 ;
@@ -456477,7 +484719,7 @@ StrongestPath is a Cytoscape 3 application that enables to look for one or more
     biotools:primaryContact "Haixu Tang" .
 
 <https://bio.tools/strspy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0632,
@@ -456498,7 +484740,7 @@ StrongestPath is a Cytoscape 3 application that enables to look for one or more
     sc:url "https://github.com/unique379r/strspy" .
 
 <https://bio.tools/struct> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_2269,
         edam:topic_3172,
@@ -456523,8 +484765,28 @@ An extensive set of data (pre-)processing and analysis methods and tools for met
     sc:name "struct" ;
     sc:url "http://bioconductor.org/packages/struct" .
 
+<https://bio.tools/struct-f4> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0091,
+        edam:topic_2269,
+        edam:topic_3056 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC046>,
+        "pmcid:PMC8963280",
+        "pubmed:35080599" ;
+    sc:description "A Rcpp package for ancestry profile and population structure inference from F4 statistics." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3658 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "Struct-f4" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://bitbucket.org/plibradosanz/structf4/" .
+
 <https://bio.tools/struct2graph> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0128,
         edam:topic_0154,
@@ -456544,7 +484806,7 @@ Struct2Graph uses two graph convolutional networks (GCNs) with weight sharing, a
     sc:url "https://github.com/baranwa2/Struct2Graph" .
 
 <https://bio.tools/struct2net> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -456567,7 +484829,7 @@ Struct2Graph uses two graph convolutional networks (GCNs) with weight sharing, a
     biotools:primaryContact "Struct2Net Support" .
 
 <https://bio.tools/structator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0097,
@@ -456584,7 +484846,7 @@ Struct2Graph uses two graph convolutional networks (GCNs) with weight sharing, a
     sc:url "http://www.zbh.uni-hamburg.de/?id=271" .
 
 <https://bio.tools/structgraphics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0769 ;
     sc:citation <https://doi.org/10.1109/TVCG.2020.3030476>,
@@ -456598,7 +484860,7 @@ Information visualization research has developed powerful systems that enable us
     sc:url "https://www.lri.fr/~fanis/StructGraphics/" .
 
 <https://bio.tools/structuprint> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -456618,12 +484880,54 @@ Information visualization research has developed powerful systems that enable us
     sc:url "http://dgkontopoulos.io/Structuprint/" ;
     biotools:primaryContact <http://orcid.org/0000-0002-5082-1929> .
 
+<https://bio.tools/structural_signatures> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2291" ;
+            sc:name "UniProt ID" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2299" ;
+            sc:name "Gene name" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0080,
+        edam:topic_0121,
+        edam:topic_0166,
+        edam:topic_0736,
+        edam:topic_3308 ;
+    sc:citation <https://doi.org/10.1093/DATABASE/BAAC053>,
+        "pmcid:PMC9319604",
+        "pubmed:35881481" ;
+    sc:description "A web server for exploring a database of and generating protein structural features from human cell lines and tissues." ;
+    sc:featureList edam:operation_0303,
+        edam:operation_0570,
+        edam:operation_3435 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "structural signatures" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://structural-server.kinametrix.com/" .
+
 <https://bio.tools/structure> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3056 ;
-    sc:citation "pmcid:PMC1461096",
-        "pubmed:10835412" ;
+    sc:citation <https://doi.org/10.1093/genetics/155.2.945>,
+        <https://doi.org/10.1093/genetics/164.4.1567>,
+        <https://doi.org/10.1111/j.1365-294X.2005.02553.x>,
+        <https://doi.org/10.1111/j.1471-8286.2007.01758.x>,
+        <https://doi.org/10.1111/j.1755-0998.2009.02591.x>,
+        "pmcid:PMC1461096",
+        "pmcid:PMC1462648",
+        "pmcid:PMC1974779",
+        "pmcid:PMC3518025",
+        "pubmed:10835412",
+        "pubmed:12930761",
+        "pubmed:15969739",
+        "pubmed:18784791",
+        "pubmed:21564903" ;
     sc:description "The program structureis a free software package for using multi-locus genotype data to investigate population structure. Its uses include inferring the presence of distinct populations, assigning individuals to populations, studying hybrid zones, identifying migrants and admixed individuals, and estimating population allele frequencies in situations where many individuals are migrants or admixed." ;
     sc:featureList edam:operation_3197 ;
     sc:license "Not licensed" ;
@@ -456633,7 +484937,7 @@ Information visualization research has developed powerful systems that enable us
     sc:url "http://web.stanford.edu/group/pritchardlab/structure.html" .
 
 <https://bio.tools/structure-ppi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0166,
@@ -456652,8 +484956,34 @@ Information visualization research has developed powerful systems that enable us
     biotools:primaryContact "Miguel Vazquez",
         "Support" .
 
+<https://bio.tools/structure-ppi_web> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2909" ;
+            sc:name "Organism name" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0121,
+        edam:topic_0128,
+        edam:topic_0199,
+        edam:topic_0601,
+        edam:topic_2640 ;
+    sc:citation <https://doi.org/10.1007/978-1-0716-2293-3_20>,
+        "pubmed:35751824" ;
+    sc:description "Annotating Cancer-Related Variants at Protein-Protein Interface with Structure-PPi." ;
+    sc:featureList edam:operation_0417,
+        edam:operation_0495,
+        edam:operation_3226,
+        edam:operation_3227,
+        edam:operation_3461 ;
+    sc:isAccessibleForFree true ;
+    sc:name "Structure-PPi" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://rbbt.bsc.es/StructurePPI/" .
+
 <https://bio.tools/structure_threader> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_1317 ;
     sc:citation <https://doi.org/10.5281/zenodo.573771> ;
@@ -456672,14 +485002,14 @@ Information visualization research has developed powerful systems that enable us
 
 <https://bio.tools/structurechecker> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1461" ;
-            sc:name "Protein-ligand complex" ;
-            sc:sameAs "http://edamontology.org/data_1461" ] ;
+            sc:additionalType "http://edamontology.org/data_1461" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein-ligand complex" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2087" ;
-            sc:name "Molecular property" ;
-            sc:sameAs "http://edamontology.org/data_2087" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2087" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Molecular property" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3332,
@@ -456695,7 +485025,7 @@ Information visualization research has developed powerful systems that enable us
     sc:url "http://proteinsplus.zbh.uni-hamburg.de/#structureprofiler" .
 
 <https://bio.tools/structured_input-output_lasso> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3053 ;
@@ -456710,7 +485040,7 @@ Information visualization research has developed powerful systems that enable us
     sc:url "http://www.sailing.cs.cmu.edu/main/?page_id=483" .
 
 <https://bio.tools/structurelab> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0099,
@@ -456727,7 +485057,7 @@ Information visualization research has developed powerful systems that enable us
     sc:url "https://binkley2.ncifcrf.gov/users/bshapiro/structurelab/structureLab.html" .
 
 <https://bio.tools/structureman> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application",
         "Library" ;
@@ -456751,7 +485081,7 @@ Studying biomolecular interactions is a crucial but challenging task. Due to the
     sc:url "http://compbio.utep.edu/static/downloads/script-for-munipulation2.zip" .
 
 <https://bio.tools/structurly> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0625,
         edam:topic_2885,
@@ -456773,7 +485103,7 @@ StructuRly is an R package containing a shiny application to produce detailed an
     sc:url "https://nicocriscuolo.shinyapps.io/StructuRly/" .
 
 <https://bio.tools/strum> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3053,
         edam:topic_3569 ;
@@ -456792,8 +485122,33 @@ StructuRly is an R package containing a shiny application to produce detailed an
     sc:url "https://cran.r-project.org/web/packages/strum/index.html" ;
     biotools:primaryContact <http://orcid.org/0000-0001-7989-5764> .
 
+<https://bio.tools/strvctvre> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence variations" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0622,
+        edam:topic_3063,
+        edam:topic_3175,
+        edam:topic_3325,
+        edam:topic_3574,
+        edam:topic_3958 ;
+    sc:citation <https://doi.org/10.1016/j.ajhg.2021.12.007> ;
+    sc:description "Method that predicts the pathogenicity of deletions and duplications that affect one or more exons." ;
+    sc:featureList edam:operation_2238,
+        edam:operation_3226 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "StrVCTVRE" ;
+    sc:operatingSystem "Linux" ;
+    sc:softwareHelp <https://strvctvre.berkeley.edu/> ;
+    sc:url "https://strvctvre.berkeley.edu/" .
+
 <https://bio.tools/sts> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654 ;
@@ -456807,7 +485162,7 @@ StructuRly is an R package containing a shiny application to produce detailed an
     sc:url "http://athena.bioc.uvic.ca/tools/STS" .
 
 <https://bio.tools/stse> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2259,
         edam:topic_3360,
@@ -456823,7 +485178,7 @@ StructuRly is an R package containing a shiny application to produce detailed an
     sc:url "http://www.stse-software.org/" .
 
 <https://bio.tools/stsnp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0602,
@@ -456847,18 +485202,15 @@ StructuRly is an R package containing a shiny application to produce detailed an
 
 <https://bio.tools/stssearch> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0850" ;
-            sc:name "Sequence set" ;
-            sc:sameAs "http://edamontology.org/data_0850" ],
+            sc:additionalType "http://edamontology.org/data_2887" ;
+            sc:name "Nucleic acid sequence record" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2887" ;
-            sc:name "Nucleic acid sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2887" ] ;
+            sc:additionalType "http://edamontology.org/data_0850" ;
+            sc:name "Sequence set" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1276" ;
-            sc:name "Nucleic acid features" ;
-            sc:sameAs "http://edamontology.org/data_1276" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1276" ;
+            sc:name "Nucleic acid features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -456887,8 +485239,30 @@ StructuRly is an R package containing a shiny application to produce detailed an
     sc:softwareVersion "r6" ;
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/stssearch.html" .
 
+<https://bio.tools/studierfenster> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3384,
+        edam:topic_3397,
+        edam:topic_3421,
+        edam:topic_3444,
+        edam:topic_3452 ;
+    sc:citation <https://doi.org/10.1007/S10278-021-00574-8>,
+        "pmcid:PMC8782222",
+        "pubmed:35064372" ;
+    sc:description "An Open Science Cloud-Based Medical Imaging Analysis Platform." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_1812,
+        edam:operation_3443 ;
+    sc:isAccessibleForFree true ;
+    sc:name "Studierfenster" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://studierfenster.icg.tugraz.at" .
+
 <https://bio.tools/studyStrap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2815,
         edam:topic_3304,
         edam:topic_3474 ;
@@ -456901,7 +485275,7 @@ Prediction settings with multiple studies have become increasingly common. Ensem
     sc:url "https://github.com/gloewing/studyStrap" .
 
 <https://bio.tools/stutility> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3170,
         edam:topic_3308,
@@ -456922,7 +485296,7 @@ Welcome to the STUtility web site. STUtility is an R-package with the goal of pr
     sc:url "https://ludvigla.github.io/STUtility_web_site/" .
 
 <https://bio.tools/stxm-data-analysis-script-collection-stacklab> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0593,
@@ -456942,7 +485316,7 @@ Welcome to the STUtility web site. STUtility is an R-package with the goal of pr
     biotools:primaryContact "Tobias Henn" .
 
 <https://bio.tools/sub-gse> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3053,
@@ -456956,8 +485330,22 @@ Welcome to the STUtility web site. STUtility is an R-package with the goal of pr
     sc:softwareHelp <http://www-rcf.usc.edu/~fsun/Programs/SubGSEWebPages/SubGSE_help.pdf> ;
     sc:url "http://www-rcf.usc.edu/~fsun/Programs/SubGSEWebPages/SubGSEMain.html" .
 
+<https://bio.tools/sub-spia> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:citation <https://doi.org/10.1371/journal.pone.0132813>,
+        "pubmed:26207919" ;
+    sc:description "Signaling-pathway impact analysis (SPIA) is one such method and combines both the classical enrichment analysis and the actual perturbation on a given pathway. Because this method focuses on a single pathway, its resolution generally is not very high because the differentially expressed genes may be enriched in a local region of the pathway. In the present work, to identify cancer-related pathways, we incorporated a recent subpathway analysis method into the SPIA method to form the “sub-SPIA method.”" ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "sub-SPIA" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/eshinesimida/subpathway-analysis" .
+
 <https://bio.tools/suba3> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0780 ;
@@ -456985,7 +485373,7 @@ Welcome to the STUtility web site. STUtility is an R-package with the goal of pr
         "Sandra Tanz" .
 
 <https://bio.tools/subacon> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0602,
@@ -457000,8 +485388,53 @@ Welcome to the STUtility web site. STUtility is an R-package with the goal of pr
     sc:softwareHelp <http://subacon.plantenergy.uwa.edu.au//SUBAcon.html> ;
     sc:url "http://subacon.plantenergy.uwa.edu.au//SUBAcon.html" .
 
+<https://bio.tools/subcellbarcode> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0080,
+        edam:topic_0121,
+        edam:topic_0769,
+        edam:topic_2229,
+        edam:topic_3520 ;
+    sc:citation <https://doi.org/10.1038/S41596-022-00699-2>,
+        "pubmed:35732783" ;
+    sc:description "Integrated workflow for robust spatial proteomics by mass spectrometry." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_2489,
+        edam:operation_3860 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-2.0" ;
+    sc:name "SubCellBarCode" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://bioconductor.org/packages/devel/bioc/manuals/SubCellBarCode/man/SubCellBarCode.pdf> ;
+    sc:url "http://www.subcellbarcode.org" .
+
+<https://bio.tools/subcellularvis> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0089,
+        edam:topic_0121,
+        edam:topic_0140,
+        edam:topic_0203,
+        edam:topic_2229 ;
+    sc:citation <https://doi.org/10.1101/2021.11.18.469118> ;
+    sc:description "SubcellulaRVis simplifies visualization of protein enrichment in subcellular compartments." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_2489,
+        edam:operation_3501 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Other" ;
+    sc:name "SubcellulaRVis" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/JoWatson2011/subcellularvis" .
+
 <https://bio.tools/subchlo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0140,
@@ -457019,7 +485452,7 @@ Welcome to the STUtility web site. STUtility is an R-package with the goal of pr
     biotools:primaryContact "Pufeng Du" .
 
 <https://bio.tools/subfeat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0108,
         edam:topic_0749,
@@ -457037,7 +485470,7 @@ The SubFeat is an extensive Python-based tool for generating various numerical f
     sc:url "https://github.com/fazlulhaquejony/SubFeat" .
 
 <https://bio.tools/subgraphquant> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3170,
         edam:topic_3512 ;
@@ -457050,7 +485483,7 @@ The SubFeat is an extensive Python-based tool for generating various numerical f
     sc:url "https://github.com/Kingsford-Group/subgraphquant" .
 
 <https://bio.tools/subhmm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2640,
         edam:topic_3168 ;
@@ -457069,7 +485502,7 @@ Model for Identifying Tumor Subclones R Package.
     sc:url "https://dceg.cancer.gov/tools/analysis/subhmm" .
 
 <https://bio.tools/subjunc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3168,
@@ -457086,7 +485519,7 @@ Model for Identifying Tumor Subclones R Package.
     biotools:primaryContact "Dr Wei Shi" .
 
 <https://bio.tools/subliminal_toolbox> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0622,
@@ -457102,7 +485535,7 @@ Model for Identifying Tumor Subclones R Package.
     sc:url "http://www.mcisb.org/resources/subliminal/" .
 
 <https://bio.tools/submarine> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0199,
         edam:topic_2640 ;
@@ -457120,7 +485553,7 @@ SubMARine is a polynomial-time algorithm that reconstructs cancer evolutionary h
     sc:url "https://github.com/morrislab/submarine" .
 
 <https://bio.tools/subpatcnv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0199,
@@ -457138,8 +485571,27 @@ SubMARine is a polynomial-time algorithm that reconstructs cancer evolutionary h
     biotools:primaryContact "Johnson N.",
         "Kuang R." .
 
+<https://bio.tools/subphaser> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0780,
+        edam:topic_3295,
+        edam:topic_3299 ;
+    sc:citation <https://doi.org/10.1111/NPH.18173>,
+        "pubmed:35460274" ;
+    sc:description "A robust allopolyploid subgenome phasing method based on subgenome-specific k-mers." ;
+    sc:featureList edam:operation_3454,
+        edam:operation_3472 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "SubPhaser" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/zhangrengang/SubPhaser" .
+
 <https://bio.tools/subphospred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -457156,7 +485608,7 @@ SubMARine is a polynomial-time algorithm that reconstructs cancer evolutionary h
     sc:url "http://bioinfo.ncu.edu.cn/SubPhosPred.aspx" .
 
 <https://bio.tools/subread> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3168,
@@ -457179,7 +485631,7 @@ SubMARine is a polynomial-time algorithm that reconstructs cancer evolutionary h
     biotools:primaryContact "Dr Wei Shi" .
 
 <https://bio.tools/subs2vec> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3382,
         edam:topic_3520 ;
@@ -457196,7 +485648,7 @@ This repository contains the subs2vec module, a number of Python 3.7 scripts and
     sc:url "https://github.com/jvparidon/subs2vec" .
 
 <https://bio.tools/subseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -457216,7 +485668,7 @@ This repository contains the subs2vec module, a number of Python 3.7 scripts and
         "John D. Storey" .
 
 <https://bio.tools/subseqer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -457238,7 +485690,7 @@ This repository contains the subs2vec module, a number of Python 3.7 scripts and
     biotools:primaryContact "The Parkinson Lab" .
 
 <https://bio.tools/subspaceem> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -457254,8 +485706,31 @@ This repository contains the subs2vec module, a number of Python 3.7 scripts and
     sc:url "https://www.mathworks.com/matlabcentral/fileexchange/50091-subspaceem-a-fast-maximum-a-posteriori-algorithm-for-cryo-em-single-particle-reconstruction" ;
     biotools:primaryContact "Nicha Dvornek" .
 
+<https://bio.tools/subtiwiki> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0602,
+        edam:topic_0621,
+        edam:topic_3293,
+        edam:topic_3407 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAB943>,
+        "pmcid:PMC8728116",
+        "pubmed:34664671" ;
+    sc:description "The current state of SubtiWiki, the database for the model organism Bacillus subtilis." ;
+    sc:featureList edam:operation_0435,
+        edam:operation_1781,
+        edam:operation_3208 ;
+    sc:isAccessibleForFree true ;
+    sc:name "SubtiWiki" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://subtiwiki.uni-goettingen.de/" .
+
 <https://bio.tools/subtype-gan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0659,
@@ -457275,7 +485750,7 @@ Subtype-GAN is a cancer subtype framework based on multi-omics profiles. The inp
     sc:url "https://github.com/haiyang1986/Subtype-GAN" .
 
 <https://bio.tools/subtypedrug> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0602,
@@ -457299,7 +485774,7 @@ A systematic biology tool was developed to prioritize cancer subtype-specific dr
     sc:url "https://CRAN.R-project.org/package=SubtypeDrug" .
 
 <https://bio.tools/subvis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0081,
@@ -457319,7 +485794,7 @@ A systematic biology tool was developed to prioritize cancer subtype-specific dr
     biotools:primaryContact "Scott Barlowe" .
 
 <https://bio.tools/subwai> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -457333,7 +485808,7 @@ A systematic biology tool was developed to prioritize cancer subtype-specific dr
     sc:url "http://kiharalab.org/subalignment/" .
 
 <https://bio.tools/succfind> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -457353,7 +485828,7 @@ A systematic biology tool was developed to prioritize cancer subtype-specific dr
         "JianDing Qiu" .
 
 <https://bio.tools/suddengains> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3315,
         edam:topic_3379,
         edam:topic_3419 ;
@@ -457369,7 +485844,7 @@ Sudden gains are large and stable improvements in an outcome variable between co
     sc:url "https://milanwiedemann.shinyapps.io/shinygains/" .
 
 <https://bio.tools/suffixerator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0622,
@@ -457383,8 +485858,30 @@ Sudden gains are large and stable improvements in an outcome variable between co
     sc:url "https://github.com/genometools/genometools" ;
     biotools:primaryContact "GenomeTools Forum" .
 
+<https://bio.tools/suffpcr> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_3170,
+        edam:topic_3308,
+        edam:topic_3512,
+        edam:topic_3518 ;
+    sc:citation <https://doi.org/10.1093/BIOADV/VBAC033>,
+        "pmcid:PMC9194947",
+        "pubmed:35722206" ;
+    sc:description "Sufficient principal component regression for pattern discovery in transcriptomic data." ;
+    sc:featureList edam:operation_2939,
+        edam:operation_3659,
+        edam:operation_3891 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "SuffPCR" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/dajmcdon/suffpcr" .
+
 <https://bio.tools/sufi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -457401,7 +485898,7 @@ Sudden gains are large and stable improvements in an outcome variable between co
     sc:url "https://github.com/LieberInstitute/SUFI" .
 
 <https://bio.tools/sugarbind> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0122,
@@ -457423,8 +485920,29 @@ Sudden gains are large and stable improvements in an outcome variable between co
     sc:url "https://sugarbind.expasy.org" ;
     biotools:primaryContact <http://orcid.org/0000-0002-0948-4537> .
 
+<https://bio.tools/sugardrawer> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0081,
+        edam:topic_0089,
+        edam:topic_0102,
+        edam:topic_3070 ;
+    sc:citation <https://doi.org/10.3390/MOLECULES26237149>,
+        "pmcid:PMC8659005",
+        "pubmed:34885724" ;
+    sc:description "A Web-Based Database Search Tool with Editing Glycan Structures." ;
+    sc:featureList edam:operation_1812,
+        edam:operation_2421,
+        edam:operation_3096 ;
+    sc:isAccessibleForFree true ;
+    sc:name "SugarDrawer" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://glycoinfo.gitlab.io/sugardrawer/sugar-drawer-pages/" .
+
 <https://bio.tools/sugarpy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0601,
         edam:topic_3520 ;
@@ -457442,7 +485960,7 @@ SugarPy facilitates the glycan database independent, discovery-driven identifica
     sc:url "https://github.com/SugarPy/SugarPy" .
 
 <https://bio.tools/sugsvarsel> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
         edam:topic_2269 ;
@@ -457458,7 +485976,7 @@ An R package for the SUGS and SUGS VarSel algorithms""" ;
     sc:url "https://github.com/ococrook/sugsvarsel" .
 
 <https://bio.tools/suite16> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0622,
@@ -457472,7 +485990,7 @@ An R package for the SUGS and SUGS VarSel algorithms""" ;
     sc:url "http://compbio.med.wayne.edu/software/index.html" .
 
 <https://bio.tools/suitemsa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0097,
@@ -457487,8 +486005,29 @@ An R package for the SUGS and SUGS VarSel algorithms""" ;
     sc:softwareHelp <http://bioinfolab.unl.edu/~canderson/SuiteMSA/> ;
     sc:url "http://bioinfolab.unl.edu/~canderson/SuiteMSA/" .
 
+<https://bio.tools/suitor> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0199,
+        edam:topic_2640,
+        edam:topic_3673 ;
+    sc:citation <https://doi.org/10.1371/JOURNAL.PCBI.1009309>,
+        "pmcid:PMC9009674",
+        "pubmed:35377867" ;
+    sc:description "Selecting the number of mutational signatures through cross-validation." ;
+    sc:featureList edam:operation_0303,
+        edam:operation_3227,
+        edam:operation_3435 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "SUITOR" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/binzhulab/SUITOR" .
+
 <https://bio.tools/suldex> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_0749,
@@ -457503,7 +486042,7 @@ An R package for the SUGS and SUGS VarSel algorithms""" ;
     sc:url "http://www.evolutionarygenomics.com/ProgramsData/SULDEX/SULDEX.html" .
 
 <https://bio.tools/suliso> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0176 ;
     sc:citation <https://doi.org/10.1016/j.softx.2016.11.001> ;
@@ -457518,7 +486057,7 @@ An R package for the SUGS and SUGS VarSel algorithms""" ;
     biotools:primaryContact "Philippe B. Wilson" .
 
 <https://bio.tools/sumgnn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0202,
@@ -457536,7 +486075,7 @@ An R package for the SUGS and SUGS VarSel algorithms""" ;
     biotools:primaryContact "Cao Xiao" .
 
 <https://bio.tools/summarizedbenchmark> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3307 ;
     sc:description "This package defines the BenchDesign and SummarizedBenchmark classes for building, executing, and evaluating benchmark experiments of computational methods. The SummarizedBenchmark class extends the RangedSummarizedExperiment object, and is designed to provide infrastructure to store and compare the results of applying different methods to a shared data set." ;
@@ -457554,14 +486093,14 @@ An R package for the SUGS and SUGS VarSel algorithms""" ;
 
 <https://bio.tools/summarizedexperiment> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2887" ;
-            sc:name "Nucleic acid sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2887" ] ;
+            sc:additionalType "http://edamontology.org/data_2887" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "Nucleic acid sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3112" ;
-            sc:name "Gene expression matrix" ;
-            sc:sameAs "http://edamontology.org/data_3112" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3112" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "Gene expression matrix" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3168,
@@ -457580,7 +486119,7 @@ An R package for the SUGS and SUGS VarSel algorithms""" ;
     biotools:primaryContact "BioConductor Package Maintainer" .
 
 <https://bio.tools/summer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0602,
         edam:topic_0821,
@@ -457598,8 +486137,29 @@ Cellular metabolites are generated by a complex network of biochemical reactions
     sc:name "SUMMER" ;
     sc:url "http://summer.salk.edu" .
 
+<https://bio.tools/summer_web> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_2640,
+        edam:topic_3295,
+        edam:topic_3337,
+        edam:topic_3360,
+        edam:topic_3517 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAC677>,
+        "pubmed:35947748" ;
+    sc:description "A Mendelian randomization interactive server to systematically evaluate the causal effects of risk factors and circulating biomarkers on pan-cancer survival" ;
+    sc:featureList edam:operation_0224,
+        edam:operation_3431,
+        edam:operation_3799 ;
+    sc:isAccessibleForFree true ;
+    sc:name "SUMMER" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://njmu-edu.cn:3838/SUMMER/" .
+
 <https://bio.tools/summix> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0622,
@@ -457624,7 +486184,7 @@ Estimating ancestry structure and adjusting allele frequencies for heterogeneous
     sc:url "http://shiny.clas.ucdenver.edu/Summix" .
 
 <https://bio.tools/sumoamvr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -457642,7 +486202,7 @@ Estimating ancestry structure and adjusting allele frequencies for heterogeneous
     biotools:primaryContact "Jian-Ding Qiu" .
 
 <https://bio.tools/sumosp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -457665,7 +486225,7 @@ Estimating ancestry structure and adjusting allele frequencies for heterogeneous
     biotools:primaryContact "Jian Ren" .
 
 <https://bio.tools/sumrep> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0154,
         edam:topic_2269,
@@ -457680,31 +486240,8 @@ Estimating ancestry structure and adjusting allele frequencies for heterogeneous
     sc:name "sumrep" ;
     sc:url "https://github.com/matsengrp/sumrep" .
 
-<https://bio.tools/sumrep_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0084,
-        edam:topic_0154,
-        edam:topic_2269,
-        edam:topic_2830 ;
-    sc:citation <https://doi.org/10.3389/FIMMU.2019.02533>,
-        "pmcid:PMC6838214",
-        "pubmed:31736960" ;
-    sc:description """A Summary Statistic Framework for Immune Receptor Repertoire Comparison and Model Validation.
-
-Summary statistics for repertoires.
-
-sumrep is a package for summarizing, visualizing, and comparing immune receptor repertoires. It contains dozens of different summary statistics to be applied on various levels of assumptions, from raw query reads to inferred phylogenies, as well as easy and principled ways to plot and compare repertoires. It currently supports the IgH, IgL, IgK, TRA, and TRB loci.
-
-A summary statistic framework for BCR and TCR repertoires.
-
-||| NAME EQUAL TO (PUB. DIFFERENT) bio.tools/sumrep""" ;
-    sc:featureList edam:operation_0337,
-        edam:operation_2428,
-        edam:operation_3695 ;
-    sc:name "sumrep_autogenerated" ;
-    sc:url "https://github.com/matsengrp/sumrep" .
-
 <https://bio.tools/sumstat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0102,
@@ -457720,7 +486257,7 @@ A summary statistic framework for BCR and TCR repertoires.
     sc:url "http://www.jurgott.org/linkage/sumstat.html" .
 
 <https://bio.tools/suns> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2275 ;
     sc:citation <https://doi.org/10.1371/journal.pcbi.1003750> ;
@@ -457733,7 +486270,7 @@ A summary statistic framework for BCR and TCR repertoires.
     sc:url "http://degradolab.org/suns/" .
 
 <https://bio.tools/sup> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0203,
@@ -457749,7 +486286,7 @@ A summary statistic framework for BCR and TCR repertoires.
     biotools:primaryContact "Mathieu Lemire" .
 
 <https://bio.tools/super> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0166,
@@ -457770,7 +486307,7 @@ A summary statistic framework for BCR and TCR repertoires.
     biotools:primaryContact "James Collier" .
 
 <https://bio.tools/super-delta> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2269 ;
@@ -457787,7 +486324,7 @@ A summary statistic framework for BCR and TCR repertoires.
         "Xing Qiu" .
 
 <https://bio.tools/super-focus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654,
@@ -457803,7 +486340,7 @@ A summary statistic framework for BCR and TCR repertoires.
     sc:url "http://edwards.sdsu.edu/superfocus/" .
 
 <https://bio.tools/super_complex> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
@@ -457829,8 +486366,30 @@ A summary statistic framework for BCR and TCR repertoires.
     sc:softwareHelp <https://sites.google.com/view/supercomplex/super-complex-v3-0> ;
     sc:url "https://sites.google.com/view/supercomplex/super-complex-v3-0" .
 
+<https://bio.tools/superatomiccharge> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0209,
+        edam:topic_2258,
+        edam:topic_2275,
+        edam:topic_3047,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1093/BIB/BBAB597>,
+        "pubmed:35062020" ;
+    sc:description "Out-of-the-box deep learning prediction of quantum-mechanical partial charges by graph representation and transfer learning." ;
+    sc:featureList edam:operation_2476,
+        edam:operation_3891,
+        edam:operation_3938 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Apache-2.0" ;
+    sc:name "SuperAtomicCharge" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/zjujdj/SuperAtomicCharge" .
+
 <https://bio.tools/superbaits> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0621,
@@ -457845,7 +486404,7 @@ A summary statistic framework for BCR and TCR repertoires.
     sc:url "https://github.com/BelenJM/supeRbaits" .
 
 <https://bio.tools/supercyp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0199,
@@ -457871,7 +486430,7 @@ A summary statistic framework for BCR and TCR repertoires.
         "Stefan Guenther" .
 
 <https://bio.tools/supercypspred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0202,
         edam:topic_0821,
         edam:topic_3375,
@@ -457892,7 +486451,7 @@ Drug metabolism via the cytochrome P450 system has emerged as an important deter
     sc:url "http://insilico-cyp.charite.de/SuperCYPsPred/" .
 
 <https://bio.tools/superfamily> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0623,
@@ -457914,7 +486473,7 @@ Drug metabolism via the cytochrome P450 system has emerged as an important deter
     biotools:primaryContact "Contact Form" .
 
 <https://bio.tools/superfreq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0199,
         edam:topic_0622,
@@ -457940,7 +486499,7 @@ SuperFreq analyses and filters somatic SNVs and short indels, calls copy numbers
     sc:url "https://gitlab.wehi.edu.au/flensburg.c/SuperFreqPaper" .
 
 <https://bio.tools/supergnova> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0625,
@@ -457964,7 +486523,7 @@ SuperFreq analyses and filters somatic SNVs and short indels, calls copy numbers
     sc:url "https://github.com/qlu-lab/SUPERGNOVA" .
 
 <https://bio.tools/superhirn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121 ;
     sc:citation <https://doi.org/10.1002/pmic.200700057> ;
@@ -457978,7 +486537,7 @@ SuperFreq analyses and filters somatic SNVs and short indels, calls copy numbers
     sc:url "http://tools.proteomecenter.org/wiki/index.php?title=Software:SuperHirn" .
 
 <https://bio.tools/superhistopath> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0634,
@@ -457999,7 +486558,7 @@ Code is available by request.""" ;
     sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=33552964" .
 
 <https://bio.tools/superimpose> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0154,
@@ -458016,7 +486575,7 @@ Code is available by request.""" ;
     sc:url "http://bioinformatics.charite.de/superimpose" .
 
 <https://bio.tools/superlink> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3053 ;
@@ -458031,7 +486590,7 @@ Code is available by request.""" ;
     sc:url "http://www.cs.technion.ac.il/labs/cbl/superlink/" .
 
 <https://bio.tools/superlooper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0153,
@@ -458055,22 +486614,18 @@ Code is available by request.""" ;
 
 <https://bio.tools/supermatcher> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ],
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0874" ;
-            sc:name "Comparison matrix" ;
-            sc:sameAs "http://edamontology.org/data_0874" ],
+            sc:additionalType "http://edamontology.org/data_0874" ;
+            sc:name "Comparison matrix" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1381" ;
-            sc:name "Sequence alignment (pair)" ;
-            sc:sameAs "http://edamontology.org/data_1381" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1381" ;
+            sc:name "Sequence alignment (pair)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0097 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -458100,7 +486655,7 @@ Code is available by request.""" ;
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/supermatcher.html" .
 
 <https://bio.tools/supermatcher_ws_husar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:description "Finds a match of a large sequence against one or more sequences." ;
@@ -458111,7 +486666,7 @@ Code is available by request.""" ;
     sc:url "http://genius.embnet.dkfz-heidelberg.de/menu/hobit/embdoc/supermatcher.html" .
 
 <https://bio.tools/supernmotifs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0099,
@@ -458127,7 +486682,7 @@ Code is available by request.""" ;
     biotools:primaryContact "Shengrui Wang" .
 
 <https://bio.tools/supernova> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Suite",
         "Workflow" ;
@@ -458149,7 +486704,7 @@ Code is available by request.""" ;
     biotools:primaryContact "David B. Jaffe" .
 
 <https://bio.tools/superpc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_2269,
@@ -458166,7 +486721,7 @@ Code is available by request.""" ;
     sc:url "http://www-stat.stanford.edu/~tibs/superpc/" .
 
 <https://bio.tools/superphy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3301,
@@ -458184,7 +486739,7 @@ Code is available by request.""" ;
     biotools:primaryContact "Support" .
 
 <https://bio.tools/superplotsofdata> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_2269,
         edam:topic_3678 ;
@@ -458198,7 +486753,7 @@ Code is available by request.""" ;
     sc:url "https://huygens.science.uva.nl/SuperPlotsOfData/" .
 
 <https://bio.tools/superpose> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -458220,7 +486775,7 @@ Code is available by request.""" ;
     biotools:primaryContact "Contact form" .
 
 <https://bio.tools/superpose3d> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0081 ;
     sc:citation <https://doi.org/10.1371/journal.pone.0011988> ;
@@ -458236,7 +486791,7 @@ Code is available by request.""" ;
     sc:url "http://cbm.bio.uniroma2.it/superpose3D" .
 
 <https://bio.tools/superpred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0209,
@@ -458261,7 +486816,7 @@ Code is available by request.""" ;
         "Priyanka Banerjee" .
 
 <https://bio.tools/superq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3053,
@@ -458277,7 +486832,7 @@ Code is available by request.""" ;
     sc:url "http://www.uea.ac.uk/computing/superq" .
 
 <https://bio.tools/superquantnode> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0121 ;
     sc:citation <https://doi.org/10.1021/acs.analchem.5b01166>,
@@ -458295,7 +486850,7 @@ Code is available by request.""" ;
     biotools:primaryContact <http://orcid.org/0000-0003-0170-5785> .
 
 <https://bio.tools/supersplat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3170 ;
     sc:citation "pubmed:20410051" ;
@@ -458309,7 +486864,7 @@ Code is available by request.""" ;
     biotools:primaryContact "Mockler Lab" .
 
 <https://bio.tools/superstr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2885,
         edam:topic_3170,
@@ -458328,7 +486883,7 @@ Code is available by request.""" ;
     biotools:primaryContact <https://orcid.org/0000-0001-5132-0774> .
 
 <https://bio.tools/supersweet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0152,
@@ -458351,7 +486906,7 @@ Code is available by request.""" ;
         "Priyanka Banerjee (Data / Toxicity prediction related queries)" .
 
 <https://bio.tools/supertarget> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0209,
@@ -458373,8 +486928,30 @@ Code is available by request.""" ;
     sc:url "http://bioinformatics.charite.de/supertarget/" ;
     biotools:primaryContact "Robert Preissner" .
 
+<https://bio.tools/supertcm> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0202,
+        edam:topic_0602,
+        edam:topic_3292,
+        edam:topic_3373,
+        edam:topic_3407 ;
+    sc:citation <https://doi.org/10.1016/J.BIOPHA.2021.112315>,
+        "pubmed:34656056" ;
+    sc:description "A biocultural database combining biological pathways and historical linguistic data of Chinese Materia Medica for drug development." ;
+    sc:featureList edam:operation_2421,
+        edam:operation_3660,
+        edam:operation_3929 ;
+    sc:isAccessibleForFree true ;
+    sc:name "SuperTCM" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://tcm.charite.de/supertcm" .
+
 <https://bio.tools/supertree> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0084 ;
     sc:citation <https://doi.org/10.1080/106351502753475916> ;
@@ -458389,7 +486966,7 @@ Code is available by request.""" ;
     biotools:primaryContact "SuperTree Support" .
 
 <https://bio.tools/supervised-fuzzy-clustering-identification-fuzzy-classifiers> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269 ;
     sc:description "Supervised Fuzzy Clustering for the Identification of Fuzzy Classifiers. Each rule can represent more than one classes with different probabilities." ;
@@ -458404,7 +486981,7 @@ Code is available by request.""" ;
     biotools:primaryContact "Janos Abonyi" .
 
 <https://bio.tools/supervised-learning> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0625,
         edam:topic_3474 ;
@@ -458416,7 +486993,7 @@ Code is available by request.""" ;
     sc:url "https://github.com/krishnanlab/GenePlexus" .
 
 <https://bio.tools/suppa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3308,
         edam:topic_3320 ;
@@ -458441,7 +487018,7 @@ Code is available by request.""" ;
     biotools:primaryContact "SUPPA Users group" .
 
 <https://bio.tools/suprahex> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -458464,7 +487041,7 @@ Code is available by request.""" ;
     biotools:primaryContact <http://orcid.org/0000-0003-3961-8572> .
 
 <https://bio.tools/suprb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0081,
@@ -458479,7 +487056,7 @@ Code is available by request.""" ;
     sc:url "http://kiharalab.org/suprb/" .
 
 <https://bio.tools/suprim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0611,
         edam:topic_3370,
@@ -458493,7 +487070,7 @@ Code is available by request.""" ;
     sc:url "http://itg.beckman.illinois.edu/technology_development/software_development/suprim/" .
 
 <https://bio.tools/suretypescr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2885,
@@ -458517,7 +487094,7 @@ Code is available by request.""" ;
     sc:url "https://github.com/Meiomap/SureTypeSCR" .
 
 <https://bio.tools/surf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0203,
         edam:topic_3170,
@@ -458536,7 +487113,7 @@ The Statistical Utility for RBP Functions (SURF) is an integrative analysis fram
     sc:url "https://github.com/keleslab/surf" .
 
 <https://bio.tools/surfacegenie> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
         edam:topic_2229,
@@ -458554,8 +487131,31 @@ SurfaceGenie is a web-application for computing the GenieScore , a prioritizatio
     sc:name "SurfaceGenie" ;
     sc:url "http://www.cellsurfer.net/surfacegenie" .
 
+<https://bio.tools/surfaltr> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0121,
+        edam:topic_0166,
+        edam:topic_0820,
+        edam:topic_2229,
+        edam:topic_3320 ;
+    sc:citation <https://doi.org/10.1002/PMIC.202200002>,
+        "pubmed:35678367" ;
+    sc:description "An R/Bioconductor package to benchmark surface protein isoforms by rapid prediction and visualization of transmembrane topologies." ;
+    sc:featureList edam:operation_0264,
+        edam:operation_0269,
+        edam:operation_2241 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "surfaltr" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://bioconductor.org/packages/release/bioc/manuals/surfaltr/man/surfaltr.pdf> ;
+    sc:url "https://bioconductor.org/packages/surfaltr" .
+
 <https://bio.tools/surfinfba> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3172,
         edam:topic_3315,
@@ -458571,8 +487171,29 @@ Dynamic FBA for use with COBRAPy metabolic models.""" ;
     sc:name "surfinFBA" ;
     sc:url "https://github.com/jdbrunner/surfin_fba" .
 
+<https://bio.tools/surfmap> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_0130,
+        edam:topic_0166,
+        edam:topic_0749 ;
+    sc:citation <https://doi.org/10.1101/2021.10.15.464543> ;
+    sc:description "SURFMAP is a free standalone and easy-to-use software that enables the fast and automated 2-D projection of either predefined features of protein surface (electrostatic potential, Kyte-Doolittle hydrophobicity, Wimley-White hydrophobicity, stickiness and surface relief) or any descriptor encoded in the temperature factor column of a PDB file. The 2-D maps computed by SURFMAP can be used to analyze and/or compare protein surface properties." ;
+    sc:featureList edam:operation_0387,
+        edam:operation_2429,
+        edam:operation_3666,
+        edam:operation_3799 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "SURFMAP" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/i2bc/SURFMAP" .
+
 <https://bio.tools/surfstamp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0166,
         edam:topic_3382 ;
     sc:citation <https://doi.org/10.1101/2020.10.29.360701> ;
@@ -458585,7 +487206,7 @@ Dynamic FBA for use with COBRAPy metabolic models.""" ;
     sc:url "https://github.com/yamule/SurfStamp-public/releases" .
 
 <https://bio.tools/surpresi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0154 ;
@@ -458602,7 +487223,7 @@ Dynamic FBA for use with COBRAPy metabolic models.""" ;
     sc:url "http://pmbm.ippt.gov.pl/services/surpresi/cgi-bin/prediction.py" .
 
 <https://bio.tools/surreyfba> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0622,
@@ -458619,7 +487240,7 @@ Dynamic FBA for use with COBRAPy metabolic models.""" ;
     sc:url "http://sysbio3.fhms.surrey.ac.uk/sfba/index.html" .
 
 <https://bio.tools/survbart> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btq660> ;
@@ -458632,8 +487253,49 @@ Dynamic FBA for use with COBRAPy metabolic models.""" ;
         "Windows" ;
     sc:url "http://works.bepress.com/veera/1/" .
 
+<https://bio.tools/survbenchmark> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_2269,
+        edam:topic_3379,
+        edam:topic_3474,
+        edam:topic_3577 ;
+    sc:citation <https://doi.org/10.1093/GIGASCIENCE/GIAC071>,
+        "pmcid:PMC9338425",
+        "pubmed:35906887" ;
+    sc:description "Comprehensive benchmarking study of survival analysis methods using both omics data and clinical data." ;
+    sc:featureList edam:operation_3435,
+        edam:operation_3659 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Apache-2.0" ;
+    sc:name "SurvBenchmark" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/SydneyBioX/SurvBenchmark_package" .
+
+<https://bio.tools/survbin> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_2269,
+        edam:topic_2640,
+        edam:topic_3379 ;
+    sc:citation <https://doi.org/10.1177/09622802211048030>,
+        "pmcid:PMC8829729",
+        "pubmed:34870495" ;
+    sc:description "A class of two-sample nonparametric statistics for binary and time-to-event outcomes." ;
+    sc:featureList edam:operation_2238,
+        edam:operation_3454 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "SurvBin" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/MartaBofillRoig/SurvBin" .
+
 <https://bio.tools/survclust> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0199,
         edam:topic_2640,
@@ -458652,7 +487314,7 @@ survClust is an outcome weighted supervised clustering algorithm, designed to cl
     sc:url "https://github.com/arorarshi/survClust" .
 
 <https://bio.tools/survcomp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0634,
@@ -458677,7 +487339,7 @@ survClust is an outcome weighted supervised clustering algorithm, designed to cl
         "Markus Schroeder" .
 
 <https://bio.tools/survcurve> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3070 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btv463> ;
@@ -458695,7 +487357,7 @@ survClust is an outcome weighted supervised clustering algorithm, designed to cl
     biotools:primaryContact "Roman Laskowski" .
 
 <https://bio.tools/survelm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2269 ;
     sc:citation <https://doi.org/10.1016/j.knosys.2018.07.009> ;
@@ -458709,7 +487371,7 @@ survClust is an outcome weighted supervised clustering algorithm, designed to cl
     biotools:primaryContact "Hong Wang" .
 
 <https://bio.tools/survgenesinterim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3678 ;
@@ -458726,7 +487388,7 @@ survClust is an outcome weighted supervised clustering algorithm, designed to cl
     biotools:primaryContact "Support" .
 
 <https://bio.tools/survirus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3170,
@@ -458741,8 +487403,30 @@ survClust is an outcome weighted supervised clustering algorithm, designed to cl
     sc:name "SurVirus" ;
     sc:url "https://github.com/kensung-lab/SurVirus" .
 
+<https://bio.tools/survival_genie> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0602,
+        edam:topic_2640,
+        edam:topic_3170,
+        edam:topic_3308,
+        edam:topic_3360 ;
+    sc:citation <https://doi.org/10.1101/2021.09.28.462224> ;
+    sc:description "A web portal for single-cell data, gene-ratio, and cell composition-based survival analyses." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_3463,
+        edam:operation_3503,
+        edam:operation_3766 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "Survival Genie" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://bbisr.shinyapps.winship.emory.edu/SurvivalGenie/" .
+
 <https://bio.tools/survival_kit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_3053,
@@ -458758,7 +487442,7 @@ survClust is an outcome weighted supervised clustering algorithm, designed to cl
     sc:url "http://www.nas.boku.ac.at/nuwi/the-survival-kit/" .
 
 <https://bio.tools/survivalgwas_power> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0208,
         edam:topic_3056,
@@ -458777,7 +487461,7 @@ survClust is an outcome weighted supervised clustering algorithm, designed to cl
     biotools:primaryContact <http://orcid.org/0000-0001-6981-6962> .
 
 <https://bio.tools/survivalgwas_sv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0625,
@@ -458797,7 +487481,7 @@ survClust is an outcome weighted supervised clustering algorithm, designed to cl
     biotools:primaryContact "Hamzah Syed" .
 
 <https://bio.tools/survivalmeth> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_2640,
         edam:topic_3295,
@@ -458815,19 +487499,8 @@ The functional elements associated with DNA methylation, for example enhancer re
     sc:name "SurvivalMeth" ;
     sc:url "http://bio-bigdata.hrbmu.edu.cn/survivalmeth" .
 
-<https://bio.tools/survivorship_care_plan> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_2640,
-        edam:topic_3403,
-        edam:topic_3421 ;
-    sc:citation <https://doi.org/10.1093/NOP/NPX034>,
-        "pmcid:PMC6655526",
-        "pubmed:31386011" ;
-    sc:description "> LOW CONFIDENCE! | > CORRECT NAME OF TOOL COULD ALSO BE 'Survivorship care planning neuro-oncology', 'survivorship care plans', 'survivorship care planning', 'survivorship care' | Survivorship care planning in neuro-oncology | The Neuro-Oncology Patient Survivorship Care Plan | Cancer patient survivorship has become a significant topic within oncology for both adult and pediatric patients" ;
-    sc:name "survivorship care plan" ;
-    sc:url "https://www.soc-neuro-onc.org/SNO/Resources/Survivorship_Care_Plan.aspx" .
-
 <https://bio.tools/survmicro> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0659,
@@ -458844,7 +487517,7 @@ The functional elements associated with DNA methylation, for example enhancer re
     sc:url "http://bioinformatica.mty.itesm.mx:8080/Biomatec/Survmicro.jsp" .
 
 <https://bio.tools/survnet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0634,
@@ -458867,7 +487540,7 @@ The functional elements associated with DNA methylation, for example enhancer re
     biotools:primaryContact "Han Liang" .
 
 <https://bio.tools/sushi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -458886,8 +487559,31 @@ The functional elements associated with DNA methylation, for example enhancer re
     sc:url "http://bioconductor.org/packages/release/bioc/html/Sushi.html" ;
     biotools:primaryContact "Douglas H Phanstiel" .
 
+<https://bio.tools/suspect-abl> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0130,
+        edam:topic_0154,
+        edam:topic_0199,
+        edam:topic_3474,
+        edam:topic_3577 ;
+    sc:citation <https://doi.org/10.1016/J.CSBJ.2021.09.016>,
+        "pmcid:PMC8495037",
+        "pubmed:34667533" ;
+    sc:description "Structure-guided machine learning prediction of drug resistance mutations in Abelson 1 kinase." ;
+    sc:featureList edam:operation_0331,
+        edam:operation_0478,
+        edam:operation_2575 ;
+    sc:isAccessibleForFree true ;
+    sc:name "SUSPECT-ABL" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <http://biosig.unimelb.edu.au/suspect_abl/help> ;
+    sc:url "http://biosig.unimelb.edu.au/suspect_abl/" .
+
 <https://bio.tools/suspect-pza> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0130,
         edam:topic_0154,
         edam:topic_0199,
@@ -458905,7 +487601,7 @@ The functional elements associated with DNA methylation, for example enhancer re
     sc:url "http://biosig.unimelb.edu.au/suspect_pza/" .
 
 <https://bio.tools/sv-bay> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0199,
@@ -458924,22 +487620,22 @@ The functional elements associated with DNA methylation, for example enhancer re
 
 <https://bio.tools/sv-callers> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2012" ;
-            sc:name "Sequence coordinates" ;
-            sc:sameAs "http://edamontology.org/data_2012" ],
+            sc:additionalType "http://edamontology.org/data_1383" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Sequence alignment (nucleic acid)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "DNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ],
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "DNA sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1383" ;
-            sc:name "Sequence alignment (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1383" ] ;
+            sc:additionalType "http://edamontology.org/data_2012" ;
+            sc:encodingFormat "http://edamontology.org/format_3003" ;
+            sc:name "Sequence coordinates" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence variations" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0091,
@@ -458966,25 +487662,28 @@ The functional elements associated with DNA methylation, for example enhancer re
     sc:softwareVersion "1.0.0",
         "1.1.0",
         "1.1.1",
-        "1.1.2" ;
+        "1.1.2",
+        "1.1.3",
+        "1.2.0",
+        "1.2.1" ;
     sc:url "https://www.research-software.nl/software/sv-callers" ;
     biotools:primaryContact <https://orcid.org/0000-0002-0828-3477>,
         <https://orcid.org/0000-0003-1711-7961> .
 
 <https://bio.tools/sv-gen> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3494" ;
-            sc:name "DNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3494" ] ;
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "DNA sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1383" ;
-            sc:name "Nucleic acid sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_1383" ],
+            sc:additionalType "http://edamontology.org/data_1383" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Nucleic acid sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence variations" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0091,
@@ -459011,7 +487710,7 @@ The functional elements associated with DNA methylation, for example enhancer re
         <https://orcid.org/0000-0003-1711-7961> .
 
 <https://bio.tools/sv-hotspot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0622,
         edam:topic_3512,
@@ -459033,7 +487732,7 @@ SV-HotSpot uses bedTools (https://github.com/arq5x/bedtools2) for various overla
     sc:url "https://github.com/ChrisMaherLab/SV-HotSpot" .
 
 <https://bio.tools/sv-plaudit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3063,
@@ -459059,18 +487758,18 @@ Source code and documentation:https://github.com/jbelyeu/SV-plaudit.""" ;
 
 <https://bio.tools/sva> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3108" ;
-            sc:name "Experimental measurement" ;
-            sc:sameAs "http://edamontology.org/data_3108" ] ;
+            sc:additionalType "http://edamontology.org/data_3108" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "Experimental measurement" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1669" ;
-            sc:name "P-value" ;
-            sc:sameAs "http://edamontology.org/data_1669" ],
+            sc:additionalType "http://edamontology.org/data_1669" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "P-value" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3572 ;
@@ -459090,7 +487789,7 @@ Source code and documentation:https://github.com/jbelyeu/SV-plaudit.""" ;
         "W. Evan Johnson" .
 
 <https://bio.tools/svad> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0634,
         edam:topic_3056,
@@ -459109,7 +487808,7 @@ Sudden cardiac death (SCD) is an important cause of mortality worldwide. It acco
     sc:url "http://svad.mbc.nctu.edu.tw/" .
 
 <https://bio.tools/svamp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0092,
@@ -459131,8 +487830,32 @@ Sudden cardiac death (SCD) is an important cause of mortality worldwide. It acco
     biotools:primaryContact <http://orcid.org/0000-0003-1734-1007>,
         "Lailatul Hidayah" .
 
+<https://bio.tools/svanna> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0622,
+        edam:topic_3175,
+        edam:topic_3512,
+        edam:topic_3673,
+        edam:topic_3676 ;
+    sc:citation <https://doi.org/10.1186/S13073-022-01046-6>,
+        "pmcid:PMC9047340",
+        "pubmed:35484572" ;
+    sc:description "Efficient and accurate pathogenicity prediction of coding and regulatory structural variants in long-read genome sequencing." ;
+    sc:featureList edam:operation_3226,
+        edam:operation_3227,
+        edam:operation_3461,
+        edam:operation_3675 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "SvAnna" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/TheJacksonLaboratory/SvAnn" .
+
 <https://bio.tools/svanumt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0769,
@@ -459156,7 +487879,7 @@ Sudden cardiac death (SCD) is an important cause of mortality worldwide. It acco
     sc:url "https://github.com/PapenfussLab/svaNUMT" .
 
 <https://bio.tools/svapls> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_3170 ;
@@ -459175,7 +487898,7 @@ varieties, after adjusting for hidden subject-specific effects of residual heter
     biotools:primaryContact "Sutirtha Chakraborty" .
 
 <https://bio.tools/svaplsseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -459195,7 +487918,7 @@ varieties, after adjusting for hidden subject-specific effects of residual heter
     biotools:primaryContact "Sutirtha Chakraborty" .
 
 <https://bio.tools/svaretro> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0769,
@@ -459216,8 +487939,29 @@ varieties, after adjusting for hidden subject-specific effects of residual heter
         "Windows" ;
     sc:url "https://github.com/PapenfussLab/svaRetro" .
 
+<https://bio.tools/svat> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0199,
+        edam:topic_0203,
+        edam:topic_0625,
+        edam:topic_3168,
+        edam:topic_3263 ;
+    sc:citation <https://doi.org/10.1101/2021.09.28.462259> ;
+    sc:description "Secure Variant Annotation and Aggregation Tool." ;
+    sc:featureList edam:operation_3196,
+        edam:operation_3227,
+        edam:operation_3436 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "SVAT" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/harmancilab/SVAT" .
+
 <https://bio.tools/svd-phy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_1775,
@@ -459233,7 +487977,7 @@ varieties, after adjusting for hidden subject-specific effects of residual heter
     sc:url "https://bitbucket.org/andrea/svd-phy" .
 
 <https://bio.tools/svdetect> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3175 ;
     sc:citation "pubmed:20639544" ;
@@ -459247,26 +487991,26 @@ varieties, after adjusting for hidden subject-specific effects of residual heter
 
 <https://bio.tools/svdetect_bam_preprocessing_pairs> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ],
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
+            sc:name "Sequence trace" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Sequence trace" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ],
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Sequence trace" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0160,
@@ -459287,50 +488031,50 @@ varieties, after adjusting for hidden subject-specific effects of residual heter
 
 <https://bio.tools/svdetect_compare_step> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_3003" ;
+            sc:name "Annotation track" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ],
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_3003" ;
+            sc:name "Annotation track" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_3003" ;
+            sc:name "Annotation track" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_1317 ;
@@ -459350,42 +488094,42 @@ varieties, after adjusting for hidden subject-specific effects of residual heter
 
 <https://bio.tools/svdetect_run_parallel_step> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ],
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Sequence trace" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
+            sc:name "Sequence trace" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_3003" ;
+            sc:name "Annotation track" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_1317 ;
@@ -459406,7 +488150,7 @@ varieties, after adjusting for hidden subject-specific effects of residual heter
     biotools:primaryContact "Galaxy Support Team" .
 
 <https://bio.tools/svdman> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/17.6.566> ;
@@ -459420,7 +488164,7 @@ varieties, after adjusting for hidden subject-specific effects of residual heter
     sc:url "http://public.lanl.gov/mewall/svdman/" .
 
 <https://bio.tools/svdquartets> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0637,
@@ -459434,7 +488178,7 @@ varieties, after adjusting for hidden subject-specific effects of residual heter
     sc:url "http://www.stat.osu.edu/~lkubatko/software/SVDquartets/" .
 
 <https://bio.tools/svexpress> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Suite" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -459454,7 +488198,7 @@ varieties, after adjusting for hidden subject-specific effects of residual heter
     biotools:primaryContact <https://orcid.org/0000-0002-6090-703X> .
 
 <https://bio.tools/svfs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2640,
@@ -459472,7 +488216,7 @@ varieties, after adjusting for hidden subject-specific effects of residual heter
     sc:url "https://github.com/Majid1292/SVFS" .
 
 <https://bio.tools/svfx> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0634,
         edam:topic_2640,
@@ -459491,7 +488235,7 @@ a machine learning framework to quantify the pathogenicity of structural variant
     sc:url "https://github.com/gersteinlab/SVFX" .
 
 <https://bio.tools/svhound> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0625,
@@ -459507,7 +488251,7 @@ a machine learning framework to quantify the pathogenicity of structural variant
     sc:url "https://github.com/lfpaulin/SVhound" .
 
 <https://bio.tools/svim-asm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0625,
         edam:topic_2885,
@@ -459525,8 +488269,31 @@ SVIM-asm (pronounced SWIM-assem) is a structural variant caller for haploid or d
     sc:name "SVIM-asm" ;
     sc:url "http://github.com/eldariont/svim-asm" .
 
+<https://bio.tools/svinterpreter> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0622,
+        edam:topic_0625,
+        edam:topic_2885,
+        edam:topic_3175,
+        edam:topic_3676 ;
+    sc:citation <https://doi.org/10.3389/FGENE.2021.757170>,
+        "pmcid:PMC8671832",
+        "pubmed:34925449" ;
+    sc:description "A Comprehensive Topologically Associated Domain-Based Clinical Outcome Prediction Tool for Balanced and Unbalanced Structural Variants." ;
+    sc:featureList edam:operation_2422,
+        edam:operation_3196,
+        edam:operation_3227 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "SVInterpreter" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/DGRC-PT/SVInterpreter" .
+
 <https://bio.tools/svist4get> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3169,
         edam:topic_3170,
@@ -459546,7 +488313,7 @@ SVIM-asm (pronounced SWIM-assem) is a structural variant caller for haploid or d
     biotools:primaryContact "Artyom Egorov" .
 
 <https://bio.tools/svlr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3168,
@@ -459563,7 +488330,7 @@ SVIM-asm (pronounced SWIM-assem) is a structural variant caller for haploid or d
         "Xuefeng Cui" .
 
 <https://bio.tools/svm-classification-cancer-cell> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_2640,
@@ -459579,7 +488346,7 @@ SVIM-asm (pronounced SWIM-assem) is a structural variant caller for haploid or d
     biotools:primaryContact "Shakoor Tanoli" .
 
 <https://bio.tools/svm-prot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -459603,7 +488370,7 @@ SVIM-asm (pronounced SWIM-assem) is a structural variant caller for haploid or d
         "SVM team" .
 
 <https://bio.tools/svm-rfe> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_3070,
@@ -459622,7 +488389,7 @@ SVIM-asm (pronounced SWIM-assem) is a structural variant caller for haploid or d
     biotools:primaryContact "Ke Yan" .
 
 <https://bio.tools/svm-rne> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -459640,7 +488407,7 @@ SVIM-asm (pronounced SWIM-assem) is a structural variant caller for haploid or d
     sc:url "http://web.macam.ac.il/~myousef/MyTools/SVM-RNE.htm" .
 
 <https://bio.tools/svm2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3175 ;
     sc:citation <https://doi.org/10.1093/nar/gks606> ;
@@ -459657,14 +488424,14 @@ SVIM-asm (pronounced SWIM-assem) is a structural variant caller for haploid or d
 
 <https://bio.tools/svm2crm> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3112" ;
-            sc:name "Gene expression matrix" ;
-            sc:sameAs "http://edamontology.org/data_3112" ] ;
+            sc:additionalType "http://edamontology.org/data_3112" ;
+            sc:encodingFormat "http://edamontology.org/format_3003" ;
+            sc:name "Gene expression matrix" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1270" ;
-            sc:name "Feature table" ;
-            sc:sameAs "http://edamontology.org/data_1270" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1270" ;
+            sc:encodingFormat "http://edamontology.org/format_3003" ;
+            sc:name "Feature table" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3169 ;
@@ -459682,7 +488449,7 @@ SVIM-asm (pronounced SWIM-assem) is a structural variant caller for haploid or d
     biotools:primaryContact "Guidantonio Malagoli Tagliazucchi" .
 
 <https://bio.tools/svmatac> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3170,
@@ -459703,7 +488470,7 @@ SVIM-asm (pronounced SWIM-assem) is a structural variant caller for haploid or d
         "Yadong Wang" .
 
 <https://bio.tools/svmerge> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_3175 ;
     sc:citation "pubmed:21194472" ;
@@ -459717,14 +488484,12 @@ SVIM-asm (pronounced SWIM-assem) is a structural variant caller for haploid or d
 
 <https://bio.tools/svmhc> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:name "Protein sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:name "Protein features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1186/1471-2105-3-25> ;
@@ -459736,7 +488501,7 @@ SVIM-asm (pronounced SWIM-assem) is a structural variant caller for haploid or d
     sc:url "http://www.sbc.su.se/%7Epierre/svmhc/" .
 
 <https://bio.tools/svmil2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0749,
@@ -459755,7 +488520,7 @@ SVIM-asm (pronounced SWIM-assem) is a structural variant caller for haploid or d
     sc:url "https://github.com/UMCUGenetics/svMIL" .
 
 <https://bio.tools/svmine> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_2815,
@@ -459771,7 +488536,7 @@ SVIM-asm (pronounced SWIM-assem) is a structural variant caller for haploid or d
     biotools:primaryContact "Ruibin Xi" .
 
 <https://bio.tools/svmtm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0121,
@@ -459793,7 +488558,7 @@ SVIM-asm (pronounced SWIM-assem) is a structural variant caller for haploid or d
         "Dr. Zheng Yuan" .
 
 <https://bio.tools/svmtrip> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0166,
         edam:topic_0621,
@@ -459816,8 +488581,33 @@ In this work, we developed a new method to predict antigenic epitope with lastes
     sc:name "SVMTriP" ;
     sc:url "http://sysbio.unl.edu/SVMTriP" .
 
+<https://bio.tools/svmyr> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0121,
+        edam:topic_0153,
+        edam:topic_0160,
+        edam:topic_0601,
+        edam:topic_0821 ;
+    sc:citation <https://doi.org/10.1016/J.JMB.2022.167605>,
+        "pubmed:35662454" ;
+    sc:description "A Web Server Detecting Co- and Post-translational Myristoylation in Proteins." ;
+    sc:featureList edam:operation_0417,
+        edam:operation_0418,
+        edam:operation_0422 ;
+    sc:isAccessibleForFree true ;
+    sc:name "SVMyr" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://busca.biocomp.unibo.it/lipipred" .
+
 <https://bio.tools/svn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2269,
@@ -459834,7 +488624,7 @@ In this work, we developed a new method to predict antigenic epitope with lastes
     sc:url "http://www.niehs.nih.gov/research/resources/software/biostatistics/svn/index.cfm" .
 
 <https://bio.tools/svnn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3175,
@@ -459856,7 +488646,7 @@ In this work, we developed a new method to predict antigenic epitope with lastes
     sc:url "http://easy.ce.sharif.edu/svnn/" .
 
 <https://bio.tools/svpluscnv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_2640,
         edam:topic_2885,
@@ -459874,7 +488664,7 @@ svpluscnv is an R package designed for integrative analyses of somatic DNA copy
     sc:url "https://github.com/ccbiolab/svpluscnv" .
 
 <https://bio.tools/svrare> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_3175,
         edam:topic_3325,
@@ -459891,7 +488681,7 @@ svpluscnv is an R package designed for integrative analyses of somatic DNA copy
     biotools:primaryContact <http://orcid.org/0000-0001-8001-8494> .
 
 <https://bio.tools/svreg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3168,
@@ -459907,7 +488697,7 @@ svpluscnv is an R package designed for integrative analyses of somatic DNA copy
     biotools:primaryContact <https://orcid.org/0000-0001-9577-7872> .
 
 <https://bio.tools/svseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_2533,
@@ -459921,7 +488711,7 @@ svpluscnv is an R package designed for integrative analyses of somatic DNA copy
     sc:url "http://www.engr.uconn.edu/~jiz08001/svseq2.html" .
 
 <https://bio.tools/svtyper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0199,
@@ -459941,7 +488731,7 @@ svpluscnv is an R package designed for integrative analyses of somatic DNA copy
     biotools:primaryContact "Ira Hall" .
 
 <https://bio.tools/svviz> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654,
@@ -459956,7 +488746,7 @@ svpluscnv is an R package designed for integrative analyses of somatic DNA copy
     sc:url "http://svviz.github.io/svviz/" .
 
 <https://bio.tools/svxplorer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0625,
         edam:topic_3175,
@@ -459979,7 +488769,7 @@ SVXplorer accepts a BAM file of target as input and outputs a BEDPE file (and an
     sc:url "https://github.com/kunalkathuria/SVXplorer" .
 
 <https://bio.tools/svy_freqs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3305,
         edam:topic_3390 ;
@@ -459991,7 +488781,7 @@ SVXplorer accepts a BAM file of target as input and outputs a BEDPE file (and an
     sc:url "https://github.com/kmuthusi/generic-sas-macros" .
 
 <https://bio.tools/swakk> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0154,
@@ -460013,7 +488803,7 @@ SVXplorer accepts a BAM file of target as input and outputs a BEDPE file (and an
     biotools:primaryContact "Han Liang" .
 
 <https://bio.tools/swalign> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3569 ;
@@ -460026,7 +488816,7 @@ SVXplorer accepts a BAM file of target as input and outputs a BEDPE file (and an
     sc:url "http://code.google.com/p/swalign/" .
 
 <https://bio.tools/swalo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0622,
@@ -460049,7 +488839,7 @@ SVXplorer accepts a BAM file of target as input and outputs a BEDPE file (and an
     sc:url "https://atifrahman.github.io/SWALO/" .
 
 <https://bio.tools/swam> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0625,
@@ -460069,7 +488859,7 @@ SVXplorer accepts a BAM file of target as input and outputs a BEDPE file (and an
         <https://orcid.org/0000-0002-3631-3979> .
 
 <https://bio.tools/swan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0602,
@@ -460082,7 +488872,7 @@ SVXplorer accepts a BAM file of target as input and outputs a BEDPE file (and an
     sc:url "http://www.sinhalab.net/software" .
 
 <https://bio.tools/swan-transcriptome> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3170,
         edam:topic_3512 ;
@@ -460098,7 +488888,7 @@ swan is a tool for visualizing and analyzing transcript isoforms.""" ;
     sc:url "https://pypi.org/project/swan-vis/1.0/" .
 
 <https://bio.tools/swap-assembler> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0622,
@@ -460113,14 +488903,14 @@ swan is a tool for visualizing and analyzing transcript isoforms.""" ;
 
 <https://bio.tools/swarm> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ] ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:encodingFormat "http://edamontology.org/format_2546" ;
+            sc:name "Nucleic acid sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1235" ;
-            sc:name "Sequence cluster" ;
-            sc:sameAs "http://edamontology.org/data_1235" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1235" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Sequence cluster" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3047,
@@ -460142,7 +488932,7 @@ swan is a tool for visualizing and analyzing transcript isoforms.""" ;
     sc:url "https://github.com/torognes/swarm" .
 
 <https://bio.tools/swarm-cg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0176,
         edam:topic_0602,
         edam:topic_2275,
@@ -460159,7 +488949,7 @@ Swarm-CG is designed for automatically optimizing the bonded terms of a MARTINI-
     sc:url "http://www.github.com/GMPavanLab/SwarmCG" .
 
 <https://bio.tools/swarmdock> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2275 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btt038> ;
@@ -460173,7 +488963,7 @@ Swarm-CG is designed for automatically optimizing the bonded terms of a MARTINI-
     sc:url "http://bmm.cancerresearchuk.org/~SwarmDock/index.html" .
 
 <https://bio.tools/swarmtcr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_2640,
         edam:topic_3324 ;
@@ -460187,7 +488977,7 @@ SwarmTCR predicts T-cell receptor (TCR) specificity using the 'distance' between
     sc:url "https://github.com/thecodingdoc/SwarmTCR" .
 
 <https://bio.tools/swarnseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -460206,14 +488996,14 @@ SwarmTCR predicts T-cell receptor (TCR) specificity using the 'distance' between
 
 <https://bio.tools/swath2stats> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3110" ;
-            sc:name "Raw microarray data" ;
-            sc:sameAs "http://edamontology.org/data_3110" ] ;
+            sc:additionalType "http://edamontology.org/data_3110" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Raw microarray data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3111" ;
-            sc:name "Processed microarray data" ;
-            sc:sameAs "http://edamontology.org/data_3111" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3111" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Processed microarray data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3520 ;
@@ -460233,7 +489023,7 @@ SwarmTCR predicts T-cell receptor (TCR) specificity using the 'distance' between
     biotools:primaryContact <http://orcid.org/0000-0001-9105-6381> .
 
 <https://bio.tools/swathxtend> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -460252,7 +489042,7 @@ SwarmTCR predicts T-cell receptor (TCR) specificity using the 'distance' between
     biotools:primaryContact "Jemma Wu" .
 
 <https://bio.tools/swc-batch-check> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2229 ;
     sc:citation <https://doi.org/10.1371/JOURNAL.PONE.0228091>,
         "pmcid:PMC6977721",
@@ -460272,7 +489062,7 @@ Fix structures with zero size diameter.""" ;
     sc:url "https://github.com/dohalloran/SWC_BATCH_CHECK" .
 
 <https://bio.tools/swcam> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2229,
@@ -460291,7 +489081,7 @@ We report a sample-wise Convex Analysis of Mixtures (swCAM) method that can esti
     sc:url "https://github.com/Lululuella/swCAM" .
 
 <https://bio.tools/swcrtdesign> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:citation <https://doi.org/10.1016/J.CMPB.2020.105514>,
         "pubmed:32554025" ;
     sc:description """An RPackage for Stepped Wedge Trial Design and Analysis.
@@ -460303,7 +489093,7 @@ Stepped wedge trials (SWTs) are a type of cluster-randomized trial that are comm
     sc:url "https://rdrr.io/cran/swCRTdesign/" .
 
 <https://bio.tools/swcuda> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0097,
@@ -460317,7 +489107,7 @@ Stepped wedge trials (SWTs) are a type of cluster-randomized trial that are comm
     sc:url "http://bioinformatics.cribi.unipd.it/cuda/swcuda.html" .
 
 <https://bio.tools/swdmr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3168,
         edam:topic_3295 ;
@@ -460332,8 +489122,29 @@ Stepped wedge trials (SWTs) are a type of cluster-randomized trial that are comm
     biotools:primaryContact "BingYu Chen",
         "Dongsheng Huang" .
 
+<https://bio.tools/swdpwr> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_2815,
+        edam:topic_3379 ;
+    sc:citation <https://doi.org/10.1016/J.CMPB.2021.106522>,
+        "pmcid:PMC8665077",
+        "pubmed:34818620" ;
+    sc:description "A SAS macro and an R package for power calculations in stepped wedge cluster randomized trials." ;
+    sc:featureList edam:operation_3432,
+        edam:operation_3435 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "swdpwr" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://cran.r-project.org/web/packages/swdpwr/swdpwr.pdf> ;
+    sc:url "https://jiachenchen322.shinyapps.io/swdpwr_shinyapp/" .
+
 <https://bio.tools/sweblast> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3127,
@@ -460349,7 +489160,7 @@ Stepped wedge trials (SWTs) are a type of cluster-randomized trial that are comm
     sc:url "http://bioinformatics.org/sweblast/wiki/" .
 
 <https://bio.tools/sweed> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3056 ;
     sc:citation <https://doi.org/10.1101/gr.4252305>,
@@ -460364,7 +489175,7 @@ Stepped wedge trials (SWTs) are a type of cluster-randomized trial that are comm
     sc:url "https://github.com/alachins/sweed" .
 
 <https://bio.tools/sweep> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3056 ;
     sc:description "Allows large-scale analysis of haplotype structure in genomes for the primary purpose of detecting evidence of natural selection. Primarily, it uses the Long Range Haplotype (LRH) test to look for alleles of high frequency with long-range linkage disequilibrium (LD), which suggest the haplotype rapidly rose to high frequency before recombination could break down associations with nearby markers" ;
@@ -460376,7 +489187,7 @@ Stepped wedge trials (SWTs) are a type of cluster-randomized trial that are comm
     sc:url "http://archive.broadinstitute.org/mpg/sweep/" .
 
 <https://bio.tools/sweepcluster> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Suite" ;
     sc:applicationSubCategory edam:topic_0102,
@@ -460397,7 +489208,7 @@ Stepped wedge trials (SWTs) are a type of cluster-randomized trial that are comm
         "Qianjun Chen" .
 
 <https://bio.tools/sweepfinder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3056 ;
     sc:citation <https://doi.org/10.1101/gr.4252305> ;
@@ -460410,7 +489221,7 @@ Stepped wedge trials (SWTs) are a type of cluster-randomized trial that are comm
     sc:url "http://people.binf.ku.dk/rasmus/webpage/sf.html" .
 
 <https://bio.tools/sweetd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -460425,7 +489236,7 @@ Stepped wedge trials (SWTs) are a type of cluster-randomized trial that are comm
     sc:url "https://github.com/amberjoybarton/sweetD" .
 
 <https://bio.tools/sweetmollygrace> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_2275 ;
     sc:description "Automate work of rendering and animating molecules." ;
@@ -460437,7 +489248,7 @@ Stepped wedge trials (SWTs) are a type of cluster-randomized trial that are comm
     sc:url "http://rodomontano.altervista.org/engSweetMG.php" .
 
 <https://bio.tools/sweetpea> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3304,
         edam:topic_3474,
@@ -460457,7 +489268,7 @@ Stepped wedge trials (SWTs) are a type of cluster-randomized trial that are comm
     sc:url "https://sweetpea-org.github.io/" .
 
 <https://bio.tools/swembl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3169,
         edam:topic_3176,
@@ -460472,14 +489283,12 @@ Stepped wedge trials (SWTs) are a type of cluster-randomized trial that are comm
 
 <https://bio.tools/swepep> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2906" ;
-            sc:name "Peptide ID" ;
-            sc:sameAs "http://edamontology.org/data_2906" ] ;
+            sc:additionalType "http://edamontology.org/data_2906" ;
+            sc:name "Peptide ID" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2979" ;
-            sc:name "Peptide property" ;
-            sc:sameAs "http://edamontology.org/data_2979" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2979" ;
+            sc:name "Peptide property" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154 ;
     sc:citation <https://doi.org/10.1074/mcp.M500401-MCP200> ;
@@ -460494,7 +489303,7 @@ Stepped wedge trials (SWTs) are a type of cluster-randomized trial that are comm
     sc:url "http://www.swepep.se/" .
 
 <https://bio.tools/swfdr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3068,
         edam:topic_3315 ;
@@ -460516,10 +489325,10 @@ Stepped wedge trials (SWTs) are a type of cluster-randomized trial that are comm
 
 <https://bio.tools/swicz> a sc:SoftwareApplication ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2531" ;
-            sc:name "Experiment report" ;
-            sc:sameAs "http://edamontology.org/data_2531" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2531" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Experiment report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_3520 ;
@@ -460549,7 +489358,7 @@ Stepped wedge trials (SWTs) are a type of cluster-randomized trial that are comm
     biotools:primaryContact "Jiří Vohradský" .
 
 <https://bio.tools/swift> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:author "Kim R. Rasmussen" ;
@@ -460568,7 +489377,7 @@ Stepped wedge trials (SWTs) are a type of cluster-randomized trial that are comm
     sc:url "https://bibiserv.cebitec.uni-bielefeld.de/swift" .
 
 <https://bio.tools/swift-active_screener> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3444,
         edam:topic_3474,
         edam:topic_3500 ;
@@ -460581,7 +489390,7 @@ In the screening phase of systematic review, researchers use detailed inclusion
     sc:url "https://www.sciome.com/swift-activescreener/" .
 
 <https://bio.tools/swift-illumina> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3168 ;
@@ -460596,7 +489405,7 @@ In the screening phase of systematic review, researchers use detailed inclusion
     biotools:primaryContact "GitHub Issues" .
 
 <https://bio.tools/swiftcore> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0602,
         edam:topic_3172,
@@ -460616,7 +489425,7 @@ swiftcore is a tool for the context-specific reconstruction of genome-scale meta
     sc:url "https://mtefagh.github.io/swiftcore/" .
 
 <https://bio.tools/swimmer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0625,
@@ -460634,7 +489443,7 @@ swiftcore is a tool for the context-specific reconstruction of genome-scale meta
     sc:url "https://github.com/sportingCode/SWIMmeR" .
 
 <https://bio.tools/swimr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0621 ;
@@ -460654,22 +489463,18 @@ swiftcore is a tool for the context-specific reconstruction of genome-scale meta
 
 <https://bio.tools/swipe> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ],
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:name "Protein sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:name "Nucleic acid sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1384" ;
-            sc:name "Sequence alignment (protein)" ;
-            sc:sameAs "http://edamontology.org/data_1384" ],
+            sc:additionalType "http://edamontology.org/data_1383" ;
+            sc:name "Sequence alignment (nucleic acid)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1383" ;
-            sc:name "Sequence alignment (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1383" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1384" ;
+            sc:name "Sequence alignment (protein)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3047 ;
@@ -460689,62 +489494,55 @@ swiftcore is a tool for the context-specific reconstruction of genome-scale meta
 
 <https://bio.tools/swiss-2dpage> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0989" ;
-            sc:name "Protein identifier" ;
-            sc:sameAs "http://edamontology.org/data_0989" ],
+            sc:additionalType "http://edamontology.org/data_2791" ;
+            sc:name "Reference map name (SWISS-2DPAGE)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2374" ;
-            sc:name "Spot serial number" ;
-            sc:sameAs "http://edamontology.org/data_2374" ],
+            sc:additionalType "http://edamontology.org/data_2791" ;
+            sc:name "Reference map name (SWISS-2DPAGE)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3021" ;
-            sc:name "UniProt accession" ;
-            sc:sameAs "http://edamontology.org/data_3021" ],
+            sc:additionalType "http://edamontology.org/data_2374" ;
+            sc:name "Spot serial number" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2374" ;
-            sc:name "Spot serial number" ;
-            sc:sameAs "http://edamontology.org/data_2374" ],
+            sc:additionalType "http://edamontology.org/data_3021" ;
+            sc:name "UniProt accession" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2791" ;
-            sc:name "Reference map name (SWISS-2DPAGE)" ;
-            sc:sameAs "http://edamontology.org/data_2791" ],
+            sc:additionalType "http://edamontology.org/data_3021" ;
+            sc:name "UniProt accession" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3021" ;
-            sc:name "UniProt accession" ;
-            sc:sameAs "http://edamontology.org/data_3021" ],
+            sc:additionalType "http://edamontology.org/data_0989" ;
+            sc:name "Protein identifier" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2791" ;
-            sc:name "Reference map name (SWISS-2DPAGE)" ;
-            sc:sameAs "http://edamontology.org/data_2791" ] ;
+            sc:additionalType "http://edamontology.org/data_2374" ;
+            sc:name "Spot serial number" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2531" ;
-            sc:name "Experiment report" ;
-            sc:sameAs "http://edamontology.org/data_2531" ],
+            sc:additionalType "http://edamontology.org/data_2531" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Experiment report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2531" ;
-            sc:name "Experiment report" ;
-            sc:sameAs "http://edamontology.org/data_2531" ],
+            sc:additionalType "http://edamontology.org/data_2531" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Experiment report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2531" ;
-            sc:name "Experiment report" ;
-            sc:sameAs "http://edamontology.org/data_2531" ],
+            sc:additionalType "http://edamontology.org/data_2531" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Experiment report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2531" ;
-            sc:name "Experiment report" ;
-            sc:sameAs "http://edamontology.org/data_2531" ],
+            sc:additionalType "http://edamontology.org/data_2531" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Experiment report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2531" ;
-            sc:name "Experiment report" ;
-            sc:sameAs "http://edamontology.org/data_2531" ],
+            sc:additionalType "http://edamontology.org/data_2531" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Experiment report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2531" ;
-            sc:name "Experiment report" ;
-            sc:sameAs "http://edamontology.org/data_2531" ],
+            sc:additionalType "http://edamontology.org/data_2531" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Experiment report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2531" ;
-            sc:name "Experiment report" ;
-            sc:sameAs "http://edamontology.org/data_2531" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2531" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Experiment report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0121 ;
     sc:citation <https://doi.org/10.1002/pmic.200300830> ;
@@ -460759,7 +489557,7 @@ swiftcore is a tool for the context-specific reconstruction of genome-scale meta
     sc:url "http://www.expasy.org/ch2d/" .
 
 <https://bio.tools/swiss-model_repository> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web API",
         "Web application" ;
@@ -460785,30 +489583,27 @@ swiftcore is a tool for the context-specific reconstruction of genome-scale meta
 
 <https://bio.tools/swiss-model_workspace> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2291" ;
-            sc:name "UniProt ID" ;
-            sc:sameAs "http://edamontology.org/data_2291" ],
+            sc:additionalType "http://edamontology.org/data_2974" ;
+            sc:name "Protein sequence (raw)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3021" ;
-            sc:name "UniProt accession" ;
-            sc:sameAs "http://edamontology.org/data_3021" ],
+            sc:additionalType "http://edamontology.org/data_2974" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence (raw)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2974" ;
-            sc:name "Protein sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_2974" ],
+            sc:additionalType "http://edamontology.org/data_2291" ;
+            sc:name "UniProt ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1384" ;
-            sc:name "Sequence alignment (protein)" ;
-            sc:sameAs "http://edamontology.org/data_1384" ],
+            sc:additionalType "http://edamontology.org/data_1384" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment (protein)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2974" ;
-            sc:name "Protein sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_2974" ] ;
+            sc:additionalType "http://edamontology.org/data_3021" ;
+            sc:name "UniProt accession" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1477" ;
+            sc:name "Protein structure" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0082,
@@ -460830,7 +489625,7 @@ swiftcore is a tool for the context-specific reconstruction of genome-scale meta
     biotools:primaryContact <https://orcid.org/0000-0003-2715-335X> .
 
 <https://bio.tools/swiss-pdbviewer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0130,
@@ -460854,7 +489649,7 @@ swiftcore is a tool for the context-specific reconstruction of genome-scale meta
     biotools:primaryContact "Feedback Form" .
 
 <https://bio.tools/swiss_embnet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0091 ;
@@ -460870,7 +489665,7 @@ swiftcore is a tool for the context-specific reconstruction of genome-scale meta
     biotools:primaryContact "Support form" .
 
 <https://bio.tools/swiss_mass_abacus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0122,
@@ -460887,40 +489682,48 @@ swiftcore is a tool for the context-specific reconstruction of genome-scale meta
 
 <https://bio.tools/swiss_model> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1384" ;
-            sc:name "Sequence alignment (protein)" ;
-            sc:sameAs "http://edamontology.org/data_1384" ],
+            sc:additionalType "http://edamontology.org/data_1384" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment (protein)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3021" ;
-            sc:name "UniProt accession" ;
-            sc:sameAs "http://edamontology.org/data_3021" ],
+            sc:additionalType "http://edamontology.org/data_3021" ;
+            sc:name "UniProt accession" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2974" ;
-            sc:name "Protein sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_2974" ],
+            sc:additionalType "http://edamontology.org/data_2974" ;
+            sc:name "Protein sequence (raw)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2291" ;
-            sc:name "UniProt ID" ;
-            sc:sameAs "http://edamontology.org/data_2291" ],
+            sc:additionalType "http://edamontology.org/data_2291" ;
+            sc:name "UniProt ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2974" ;
-            sc:name "Protein sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_2974" ] ;
+            sc:additionalType "http://edamontology.org/data_2974" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence (raw)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1477" ;
+            sc:name "Protein structure" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
         edam:topic_0602,
         edam:topic_2275,
         edam:topic_2814 ;
-    sc:citation "pubmed:12824332",
+    sc:citation <https://doi.org/10.1002/elps.200900140>,
+        <https://doi.org/10.1093/nar/gku340>,
+        <https://doi.org/10.1093/nar/gkw1132>,
+        <https://doi.org/10.1093/nar/gky427>,
+        "pmcid:PMC4086089",
+        "pmcid:PMC5210589",
+        "pmcid:PMC6030848",
+        "pubmed:12824332",
         "pubmed:14681401",
         "pubmed:16301204",
         "pubmed:16381875",
+        "pubmed:19517507",
+        "pubmed:24782522",
+        "pubmed:27899672",
+        "pubmed:29788355",
         "pubmed:9322042",
         "pubmed:9504803" ;
     sc:description "SWISS-MODEL is a fully automated protein structure homology-modelling server, accessible via the ExPASy web server, or from the program DeepView (Swiss Pdb-Viewer). The purpose of this server is to make Protein Modelling accessible to all biochemists and molecular biologists worldwide." ;
@@ -460936,14 +489739,12 @@ swiftcore is a tool for the context-specific reconstruction of genome-scale meta
 
 <https://bio.tools/swissadme> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2301" ;
-            sc:name "SMILES string" ;
-            sc:sameAs "http://edamontology.org/data_2301" ] ;
+            sc:additionalType "http://edamontology.org/data_2301" ;
+            sc:name "SMILES string" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0209,
         edam:topic_2258 ;
@@ -460960,7 +489761,7 @@ swiftcore is a tool for the context-specific reconstruction of genome-scale meta
     sc:url "http://www.swissadme.ch/index.php" .
 
 <https://bio.tools/swissbioisostere> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0209,
         edam:topic_2258,
@@ -460975,8 +489776,31 @@ swiftcore is a tool for the context-specific reconstruction of genome-scale meta
     sc:url "http://www.swissbioisostere.ch/" ;
     biotools:primaryContact "SwissBioisostere Contact" .
 
+<https://bio.tools/swissbiopics> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0089,
+        edam:topic_0637,
+        edam:topic_2229,
+        edam:topic_3382,
+        edam:topic_3500 ;
+    sc:citation <https://doi.org/10.1093/DATABASE/BAAC026>,
+        "pmcid:PMC9216577",
+        "pubmed:35411389" ;
+    sc:description "Interactive library of cell images for the visualization of subcellular location data." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_2421,
+        edam:operation_2489 ;
+    sc:isAccessibleForFree true ;
+    sc:license "CC-BY-4.0" ;
+    sc:name "SwissBioPics" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://www.swissbiopics.org" .
+
 <https://bio.tools/swissdock> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0121,
@@ -460996,7 +489820,7 @@ swiftcore is a tool for the context-specific reconstruction of genome-scale meta
     sc:url "http://www.swissdock.ch/" .
 
 <https://bio.tools/swisslipids> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0153,
         edam:topic_0154,
@@ -461013,18 +489837,18 @@ swiftcore is a tool for the context-specific reconstruction of genome-scale meta
 
 <https://bio.tools/swissparam> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1463" ;
-            sc:name "Small molecule structure" ;
-            sc:sameAs "http://edamontology.org/data_1463" ] ;
+            sc:additionalType "http://edamontology.org/data_1463" ;
+            sc:encodingFormat "http://edamontology.org/format_3816" ;
+            sc:name "Small molecule structure" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3871" ;
-            sc:name "Forcefield parameters" ;
-            sc:sameAs "http://edamontology.org/data_3871" ],
+            sc:additionalType "http://edamontology.org/data_3871" ;
+            sc:encodingFormat "http://edamontology.org/format_3883" ;
+            sc:name "Forcefield parameters" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3872" ;
-            sc:name "Topology data" ;
-            sc:sameAs "http://edamontology.org/data_3872" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3872" ;
+            sc:encodingFormat "http://edamontology.org/format_3887" ;
+            sc:name "Topology data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0176 ;
     sc:citation <https://doi.org/10.1002/jcc.21816>,
@@ -461037,7 +489861,7 @@ swiftcore is a tool for the context-specific reconstruction of genome-scale meta
     sc:url "http://swissparam.ch" .
 
 <https://bio.tools/swissregulon> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0622,
@@ -461057,7 +489881,7 @@ swiftcore is a tool for the context-specific reconstruction of genome-scale meta
     sc:url "http://swissregulon.unibas.ch/sr/" .
 
 <https://bio.tools/swisssidechain> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0121,
@@ -461071,14 +489895,12 @@ swiftcore is a tool for the context-specific reconstruction of genome-scale meta
 
 <https://bio.tools/swisssimilarity> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2301" ;
-            sc:name "SMILES string" ;
-            sc:sameAs "http://edamontology.org/data_2301" ] ;
+            sc:additionalType "http://edamontology.org/data_2301" ;
+            sc:name "SMILES string" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0209,
         edam:topic_2258 ;
@@ -461095,7 +489917,7 @@ swiftcore is a tool for the context-specific reconstruction of genome-scale meta
     sc:url "http://www.swisssimilarity.ch/" .
 
 <https://bio.tools/swisstargetprediction> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0209,
@@ -461119,7 +489941,7 @@ swiftcore is a tool for the context-specific reconstruction of genome-scale meta
     biotools:primaryContact "Contact Form" .
 
 <https://bio.tools/swisstree> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3293 ;
     sc:citation <https://doi.org/10.1093/gbe/evv121> ;
@@ -461133,46 +489955,37 @@ swiftcore is a tool for the context-specific reconstruction of genome-scale meta
 
 <https://bio.tools/swissvar> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2099" ;
-            sc:name "Name" ;
-            sc:sameAs "http://edamontology.org/data_2099" ],
+            sc:additionalType "http://edamontology.org/data_1153" ;
+            sc:name "OMIM ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2299" ;
-            sc:name "Gene name" ;
-            sc:sameAs "http://edamontology.org/data_2299" ],
+            sc:additionalType "http://edamontology.org/data_1009" ;
+            sc:name "Protein name" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1150" ;
-            sc:name "Disease ID" ;
-            sc:sameAs "http://edamontology.org/data_1150" ],
+            sc:additionalType "http://edamontology.org/data_1150" ;
+            sc:name "Disease ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2291" ;
-            sc:name "UniProt ID" ;
-            sc:sameAs "http://edamontology.org/data_2291" ],
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:name "Sequence variations" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1153" ;
-            sc:name "OMIM ID" ;
-            sc:sameAs "http://edamontology.org/data_1153" ],
+            sc:additionalType "http://edamontology.org/data_3021" ;
+            sc:name "UniProt accession" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ],
+            sc:additionalType "http://edamontology.org/data_1177" ;
+            sc:name "MeSH concept ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1009" ;
-            sc:name "Protein name" ;
-            sc:sameAs "http://edamontology.org/data_1009" ],
+            sc:additionalType "http://edamontology.org/data_2291" ;
+            sc:name "UniProt ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1177" ;
-            sc:name "MeSH concept ID" ;
-            sc:sameAs "http://edamontology.org/data_1177" ],
+            sc:additionalType "http://edamontology.org/data_2099" ;
+            sc:name "Name" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3021" ;
-            sc:name "UniProt accession" ;
-            sc:sameAs "http://edamontology.org/data_3021" ] ;
+            sc:additionalType "http://edamontology.org/data_2299" ;
+            sc:name "Gene name" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Protein features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0634,
@@ -461193,14 +490006,14 @@ swiftcore is a tool for the context-specific reconstruction of genome-scale meta
 
 <https://bio.tools/switchbox> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Gene expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ] ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "Gene expression data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1772" ;
-            sc:name "Score" ;
-            sc:sameAs "http://edamontology.org/data_1772" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1772" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "Score" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -461223,7 +490036,7 @@ swiftcore is a tool for the context-specific reconstruction of genome-scale meta
         "Wikum Dinalankara" .
 
 <https://bio.tools/switchde> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -461244,7 +490057,7 @@ swiftcore is a tool for the context-specific reconstruction of genome-scale meta
     biotools:primaryContact "Kieran Campbell" .
 
 <https://bio.tools/switchdna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3168,
@@ -461260,7 +490073,7 @@ swiftcore is a tool for the context-specific reconstruction of genome-scale meta
     sc:url "https://genome.unc.edu/pubsup/SWITCHdna/" .
 
 <https://bio.tools/switches> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_3047,
         edam:topic_3314 ;
@@ -461272,7 +490085,7 @@ swiftcore is a tool for the context-specific reconstruction of genome-scale meta
     sc:url "https://switches.ncbs.res.in" .
 
 <https://bio.tools/swnet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0199,
@@ -461295,8 +490108,35 @@ swiftcore is a tool for the context-specific reconstruction of genome-scale meta
         "Windows" ;
     sc:url "https://github.com/zuozhaorui/SWnet.git" .
 
+<https://bio.tools/sword2> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_3021" ;
+            sc:name "UniProt accession" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0130,
+        edam:topic_0196,
+        edam:topic_0736,
+        edam:topic_3542 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAC370>,
+        "pmcid:PMC9252838",
+        "pubmed:35580056" ;
+    sc:description "SWift and Optimized Recognition of protein Domains." ;
+    sc:featureList edam:operation_0303,
+        edam:operation_0320,
+        edam:operation_0390,
+        edam:operation_2488 ;
+    sc:isAccessibleForFree true ;
+    sc:license "CECILL-2.1" ;
+    sc:name "SWORD2" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://www.dsimb.inserm.fr/SWORD2" .
+
 <https://bio.tools/swotein> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0128,
         edam:topic_0130,
@@ -461313,7 +490153,7 @@ SWOTein method evaluates the contribution of each residue in a protein (or prote
     sc:url "http://babylone.ulb.ac.be/SWOTein" .
 
 <https://bio.tools/sxoligosearch> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0622,
@@ -461331,7 +490171,7 @@ SWOTein method evaluates the contribution of each residue in a protein (or prote
     biotools:primaryContact "Synamatrix Support" .
 
 <https://bio.tools/sxtestplate> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2885,
@@ -461346,7 +490186,7 @@ SWOTein method evaluates the contribution of each residue in a protein (or prote
     sc:url "http://www.ikmb.uni-kiel.de/resources/download-tools/software/sxtestplate" .
 
 <https://bio.tools/syapse> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0622,
@@ -461374,7 +490214,7 @@ SWOTein method evaluates the contribution of each residue in a protein (or prote
     biotools:primaryContact "Contact Form" .
 
 <https://bio.tools/syba> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_3047,
         edam:topic_3292,
@@ -461392,7 +490232,7 @@ SYnthetic BAyesian classifier (SYBA) is a Python package for the classification
     sc:url "https://github.com/lich-uct/syba" .
 
 <https://bio.tools/sybil> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0654,
@@ -461406,7 +490246,7 @@ SYnthetic BAyesian classifier (SYBA) is a Python package for the classification
     sc:url "http://sybil.sourceforge.net/" .
 
 <https://bio.tools/sybil-metabolic> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2259 ;
@@ -461424,18 +490264,15 @@ SYnthetic BAyesian classifier (SYBA) is a Python package for the classification
 
 <https://bio.tools/syco> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ],
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1597" ;
-            sc:name "Codon usage table" ;
-            sc:sameAs "http://edamontology.org/data_1597" ] ;
+            sc:additionalType "http://edamontology.org/data_1597" ;
+            sc:name "Codon usage table" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1600" ;
-            sc:name "Codon usage bias plot" ;
-            sc:sameAs "http://edamontology.org/data_1600" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1600" ;
+            sc:name "Codon usage bias plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -461466,7 +490303,7 @@ SYnthetic BAyesian classifier (SYBA) is a Python package for the classification
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/syco.html" .
 
 <https://bio.tools/syconn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0611,
         edam:topic_3334,
@@ -461483,7 +490320,7 @@ SYnthetic BAyesian classifier (SYBA) is a Python package for the classification
     biotools:primaryContact "Joergen Kornfeld" .
 
 <https://bio.tools/sydseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3053,
@@ -461499,7 +490336,7 @@ SYnthetic BAyesian classifier (SYBA) is a Python package for the classification
     sc:url "http://www.ellispatrick.com/r-packages/" .
 
 <https://bio.tools/syfpeithi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0154,
@@ -461520,7 +490357,7 @@ SYnthetic BAyesian classifier (SYBA) is a Python package for the classification
     biotools:primaryContact "Prof. Dr. Stefan Stevanovic" .
 
 <https://bio.tools/sylamer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0099,
@@ -461536,7 +490373,7 @@ SYnthetic BAyesian classifier (SYBA) is a Python package for the classification
     sc:url "http://www-test.ebi.ac.uk/enright/sylamer/" .
 
 <https://bio.tools/sylaras> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0804,
         edam:topic_3382,
         edam:topic_3934 ;
@@ -461552,7 +490389,7 @@ SYnthetic BAyesian classifier (SYBA) is a Python package for the classification
     sc:url "https://github.com/gjbaker/sylaras" .
 
 <https://bio.tools/sylarray> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0203,
@@ -461572,7 +490409,7 @@ SYnthetic BAyesian classifier (SYBA) is a Python package for the classification
     biotools:primaryContact "Anton Enright" .
 
 <https://bio.tools/sylvx> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_3293,
@@ -461588,7 +490425,7 @@ SYnthetic BAyesian classifier (SYBA) is a Python package for the classification
     sc:url "http://www.sylvx.org/" .
 
 <https://bio.tools/symap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0654 ;
@@ -461606,7 +490443,7 @@ SYnthetic BAyesian classifier (SYBA) is a Python package for the classification
     sc:url "http://www.agcol.arizona.edu/software/symap/" .
 
 <https://bio.tools/symbiogbr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0610,
@@ -461626,7 +490463,7 @@ SYnthetic BAyesian classifier (SYBA) is a Python package for the classification
         "Pim Bongaerts" .
 
 <https://bio.tools/symbiogenomesdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_0780,
@@ -461646,7 +490483,7 @@ SYnthetic BAyesian classifier (SYBA) is a Python package for the classification
     biotools:primaryContact "Contact form" .
 
 <https://bio.tools/symbiont-screener> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
         edam:topic_0769,
@@ -461662,16 +490499,37 @@ Filter contamination from filial tgs long reads or stlfr co-barcode-reads by par
     sc:name "Symbiont-Screener" ;
     sc:url "https://github.com/BGI-Qingdao/Symbiont-Screener" .
 
+<https://bio.tools/symbiquant> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0625,
+        edam:topic_3382,
+        edam:topic_3474,
+        edam:topic_3934 ;
+    sc:citation <https://doi.org/10.3389/FMICB.2022.816608>,
+        "pmcid:PMC9160162",
+        "pubmed:35663891" ;
+    sc:description "A Machine Learning Object Detection Tool for Polyploid Independent Estimates of Endosymbiont Population Size." ;
+    sc:featureList edam:operation_3196,
+        edam:operation_3553,
+        edam:operation_3799 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "SymbiQuant" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/WilsonLabMiami/SymbiQuant" .
+
 <https://bio.tools/symcurv> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ] ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:name "Nucleic acid sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Sequence features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0160 ;
     sc:author "Christoforos Nikolau",
@@ -461692,7 +490550,7 @@ Filter contamination from filial tgs long reads or stlfr co-barcode-reads by par
     biotools:primaryContact "Sonja Althammer" .
 
 <https://bio.tools/symd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0166,
@@ -461715,7 +490573,7 @@ Filter contamination from filial tgs long reads or stlfr co-barcode-reads by par
     biotools:primaryContact "Byungkook Lee" .
 
 <https://bio.tools/symmap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0202,
         edam:topic_0602,
@@ -461739,7 +490597,7 @@ It contains 499 herbs registered in the Chinese pharmacopoeia with 19,595 ingred
     sc:url "http://www.symmap.org/" .
 
 <https://bio.tools/symmdock> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0082,
@@ -461762,7 +490620,7 @@ It contains 499 herbs registered in the Chinese pharmacopoeia with 19,595 ingred
     biotools:primaryContact "SymmDock Administrator" .
 
 <https://bio.tools/symmetric> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3303,
         edam:topic_3318,
         edam:topic_3384 ;
@@ -461776,8 +490634,31 @@ The current assessment of patients with craniofacial asymmetries is accomplished
     sc:softwareVersion "1.0" ;
     sc:url "https://github.com/ealho/SymMetric_v1.0" .
 
+<https://bio.tools/symphony> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0089,
+        edam:topic_0102,
+        edam:topic_0625,
+        edam:topic_0634,
+        edam:topic_2229 ;
+    sc:citation <https://doi.org/10.1038/S41467-021-25957-X>,
+        "pmcid:PMC8497570",
+        "pubmed:34620862" ;
+    sc:description "Efficient and precise single-cell reference atlas mapping with Symphony." ;
+    sc:featureList edam:operation_0224,
+        edam:operation_2429,
+        edam:operation_3891 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "Symphony" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/immunogenomics/symphony" .
+
 <https://bio.tools/symptoma> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_2269,
         edam:topic_3063 ;
@@ -461792,7 +490673,7 @@ Symptoma is a Digital Health Assistant & Symptom Checker. Patients and doctors e
     sc:url "https://www.symptoma.com" .
 
 <https://bio.tools/syn-view> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0102,
@@ -461810,7 +490691,7 @@ Symptoma is a Digital Health Assistant & Symptom Checker. Patients and doctors e
     sc:url "https://bitbucket.org/jstahlecker/syn-view/" .
 
 <https://bio.tools/synapsej> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0203,
@@ -461832,7 +490713,7 @@ Symptoma is a Digital Health Assistant & Symptom Checker. Patients and doctors e
     sc:url "https://github.com/GB3Trinity/SynapseJ" .
 
 <https://bio.tools/synapter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -461854,7 +490735,7 @@ Symptoma is a Digital Health Assistant & Symptom Checker. Patients and doctors e
         "Sebastian Gibb" .
 
 <https://bio.tools/synaptic_genes> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3474,
         edam:topic_3512 ;
@@ -461870,7 +490751,7 @@ BACKGROUND:Assembly and function of neuronal synapses require the coordinated ex
     sc:url "http://synapticgenes.bnd.edu.uy" .
 
 <https://bio.tools/synaptus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -461887,7 +490768,7 @@ BACKGROUND:Assembly and function of neuronal synapses require the coordinated ex
     biotools:primaryContact "Martin Skjelvareid" .
 
 <https://bio.tools/synbadm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3053,
@@ -461902,8 +490783,29 @@ BACKGROUND:Assembly and function of neuronal synapses require the coordinated ex
     sc:softwareHelp <https://sites.google.com/site/synbadm/documentation> ;
     sc:url "https://sites.google.com/site/synbadm/" .
 
+<https://bio.tools/synbio2easy> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0621,
+        edam:topic_0769,
+        edam:topic_3895 ;
+    sc:citation <https://doi.org/10.1093/SYNBIO/YSAC002>,
+        "pmcid:PMC8944294",
+        "pubmed:35350192" ;
+    sc:description "Biologist-friendly tool for batch operations on SBOL designs with Excel inputs." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_2422,
+        edam:operation_3431 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "SynBio2Easy" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/BioRDM/synbio2easy" .
+
 <https://bio.tools/synbiopython> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0621,
@@ -461920,8 +490822,57 @@ BACKGROUND:Assembly and function of neuronal synapses require the coordinated ex
     sc:url "https://github.com/Global-Biofoundries-Alliance/SynBioPython" ;
     biotools:primaryContact "Chueh Loo Poh" .
 
+<https://bio.tools/synbiostrainfinder> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1045" ;
+            sc:name "Species name" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0219,
+        edam:topic_3068,
+        edam:topic_3301,
+        edam:topic_3912 ;
+    sc:citation <https://doi.org/10.1186/S12934-022-01813-5>,
+        "pmcid:PMC9107733",
+        "pubmed:35568950" ;
+    sc:description "A microbial strain database of manually curated CRISPR/Cas genetic manipulation system information for biomanufacturing." ;
+    sc:featureList edam:operation_0224,
+        edam:operation_3096,
+        edam:operation_3461 ;
+    sc:isAccessibleForFree true ;
+    sc:name "SynBioStrainFinder" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://design.rxnfinder.org/biosynstrain/" .
+
+<https://bio.tools/synbip> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0593,
+        edam:topic_2830,
+        edam:topic_3306,
+        edam:topic_3930 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAB926>,
+        "pmcid:PMC8728148",
+        "pubmed:34664670" ;
+    sc:description "SYNBIP is a SBP database that UNIQUE in (a) comprehensively describing thousands of SBPs from the perspectives of scaffolds, biophysical & functional properties, etc.; (b) panoramically illustrating the binding targets & the broad application of each SBP; and (c) enabling the sequence-based similarity search against all SBPs and their binding targets." ;
+    sc:featureList edam:operation_0239,
+        edam:operation_0479,
+        edam:operation_2421,
+        edam:operation_3092,
+        edam:operation_3216 ;
+    sc:isAccessibleForFree true ;
+    sc:name "SYNBIP" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://idrblab.org/synbip/" .
+
 <https://bio.tools/synchr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0160,
@@ -461938,8 +490889,48 @@ BACKGROUND:Assembly and function of neuronal synapses require the coordinated ex
     sc:url "http://www.lcqb.upmc.fr/CHROnicle/SynChro.html" ;
     biotools:primaryContact "Gilles Fischer" .
 
+<https://bio.tools/syncmer_mapping> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_0199,
+        edam:topic_2640 ;
+    sc:citation <https://doi.org/10.1101/2022.01.10.475696> ;
+    sc:description "Parameterized syncmer schemes improve long-read mapping." ;
+    sc:featureList edam:operation_3198,
+        edam:operation_3216,
+        edam:operation_3472 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "syncmer_mapping" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/Shamir-Lab/syncmer_mapping" .
+
+<https://bio.tools/syncmrt> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_3379,
+        edam:topic_3382,
+        edam:topic_3393,
+        edam:topic_3500 ;
+    sc:citation <https://doi.org/10.1107/S1600577522004829>,
+        "pmcid:PMC9255576",
+        "pubmed:35787575" ;
+    sc:description "A solution to image-guided synchrotron radiotherapy for quality assurance and pre-clinical trials." ;
+    sc:featureList edam:operation_3435,
+        edam:operation_3443 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Apache-2.0" ;
+    sc:name "SyncMRT" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/stylekilla/syncmrt" .
+
 <https://bio.tools/syncx_ct_aligner> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3452 ;
     sc:description "SyncX CT Aligner is a computer method to compensate for the vibration of the rotational holder by aligning neighboring X-ray images." ;
@@ -461953,7 +490944,7 @@ BACKGROUND:Assembly and function of neuronal synapses require the coordinated ex
     sc:url "http://people.cs.nctu.edu.tw/~chengchc/SCTA/" .
 
 <https://bio.tools/synergizer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0219,
@@ -461969,7 +490960,7 @@ BACKGROUND:Assembly and function of neuronal synapses require the coordinated ex
     sc:url "http://llama.mshri.on.ca/synergizer/doc/" .
 
 <https://bio.tools/synergxdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0208,
         edam:topic_2640,
         edam:topic_3172,
@@ -461987,7 +490978,7 @@ BACKGROUND:Assembly and function of neuronal synapses require the coordinated ex
     sc:url "http://SYNERGxDB.ca/" .
 
 <https://bio.tools/synergy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0202,
         edam:topic_0209,
         edam:topic_3375 ;
@@ -462004,7 +490995,7 @@ A python package to calculate, analyze, and visualize drug combination synergy a
     sc:url "https://pypi.org/project/synergy" .
 
 <https://bio.tools/synergyage> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0219,
         edam:topic_0621,
@@ -462024,7 +491015,7 @@ SynergyAge database hosts high-quality, manually curated information about the s
     sc:url "http://www.synergyage.info" .
 
 <https://bio.tools/synergyfinder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Bioinformatics portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_3307 ;
@@ -462043,7 +491034,7 @@ SynergyAge database hosts high-quality, manually curated information about the s
     biotools:primaryContact <https://orcid.org/0000-0001-7480-7710> .
 
 <https://bio.tools/synergyfinder-drug> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3336,
         edam:topic_3374,
@@ -462063,7 +491054,7 @@ SynergyFinder front-end web application source code.""" ;
     sc:url "https://synergyfinder.fimm.fi/synergy/202102251238133261/" .
 
 <https://bio.tools/synergyfinder_plus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
@@ -462086,7 +491077,7 @@ SynergyFinder front-end web application source code.""" ;
     sc:url "http://www.synergyfinderplus.org" .
 
 <https://bio.tools/synfind> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0622 ;
@@ -462104,7 +491095,7 @@ SynergyFinder front-end web application source code.""" ;
     biotools:primaryContact "Support" .
 
 <https://bio.tools/synima> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0196,
@@ -462123,7 +491114,7 @@ SynergyFinder front-end web application source code.""" ;
     biotools:primaryContact "Rhys A. Farrer" .
 
 <https://bio.tools/synlegg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0128,
@@ -462143,7 +491134,7 @@ SynergyFinder front-end web application source code.""" ;
         <https://orcid.org/0000-0003-1158-8527> .
 
 <https://bio.tools/synlet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -462163,7 +491154,7 @@ SynergyFinder front-end web application source code.""" ;
     biotools:primaryContact "Chunxuan Shao" .
 
 <https://bio.tools/synlinker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0108,
@@ -462180,7 +491171,7 @@ SynergyFinder front-end web application source code.""" ;
     sc:url "http://synlinker.syncti.org/" .
 
 <https://bio.tools/synonymousmutationgenerator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0203,
@@ -462196,7 +491187,7 @@ SynergyFinder front-end web application source code.""" ;
     sc:url "http://jong2.pythonanywhere.com/" .
 
 <https://bio.tools/synor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0621,
@@ -462215,7 +491206,7 @@ SynergyFinder front-end web application source code.""" ;
     biotools:primaryContact "Ovcharenko I." .
 
 <https://bio.tools/synpred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3306,
@@ -462233,7 +491224,7 @@ SynergyFinder front-end web application source code.""" ;
     biotools:primaryContact <https://orcid.org/0000-0003-2970-5250> .
 
 <https://bio.tools/syntR> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0654,
         edam:topic_3053 ;
@@ -462246,7 +491237,7 @@ SynergyFinder front-end web application source code.""" ;
     sc:url "http://ksamuk.github.io/syntR" .
 
 <https://bio.tools/syntalinker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0209,
@@ -462269,7 +491260,7 @@ SynergyFinder front-end web application source code.""" ;
     sc:url "https://github.com/YuYaoYang2333/SyntaLinker" .
 
 <https://bio.tools/syntarget> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2640,
@@ -462286,7 +491277,7 @@ SynergyFinder front-end web application source code.""" ;
     sc:url "http://www.chemoprofiling.org/cgi-bin/GEO/cancertarget/web_run_CT.EXAMPLES.pl" .
 
 <https://bio.tools/synteny_portal> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0622,
@@ -462305,7 +491296,7 @@ SynergyFinder front-end web application source code.""" ;
     biotools:primaryContact "Support" .
 
 <https://bio.tools/synthaser> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
@@ -462328,7 +491319,7 @@ SynergyFinder front-end web application source code.""" ;
     sc:url "http://gamcil.github.io/synthaser" .
 
 <https://bio.tools/synthdnm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library",
         "Workflow" ;
@@ -462347,7 +491338,7 @@ SynergyFinder front-end web application source code.""" ;
     sc:url "https://github.com/james-guevara/synthdnm" .
 
 <https://bio.tools/synthesis-view> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_2885,
         edam:topic_3053 ;
@@ -462363,7 +491354,7 @@ SynergyFinder front-end web application source code.""" ;
     sc:url "http://visualization.ritchielab.psu.edu/synthesis_views/plot" .
 
 <https://bio.tools/synthetic-bright-field-microscopy-image-generator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -462382,8 +491373,26 @@ SynergyFinder front-end web application source code.""" ;
     sc:url "https://www.mathworks.com/matlabcentral/fileexchange/48915-synthetic-bright-field-microscopy-image-generator" ;
     biotools:primaryContact "Patrik Malm" .
 
+<https://bio.tools/synthi> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0209,
+        edam:topic_3303,
+        edam:topic_3343 ;
+    sc:citation <https://doi.org/10.1021/ACS.JCIM.1C00754>,
+        "pubmed:34723532" ;
+    sc:description "Open-source tool for synthons-based library design." ;
+    sc:featureList edam:operation_3216 ;
+    sc:isAccessibleForFree true ;
+    sc:license "BSD-3-Clause" ;
+    sc:name "SynthI" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/Laboratoire-de-Chemoinformatique/SynthI" .
+
 <https://bio.tools/synthmorph> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3067,
         edam:topic_3384,
@@ -462400,7 +491409,7 @@ SynergyFinder front-end web application source code.""" ;
     sc:url "https://martinos.org/malte/synthmorph/" .
 
 <https://bio.tools/synthqa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0082,
@@ -462413,8 +491422,25 @@ SynergyFinder front-end web application source code.""" ;
     sc:name "SynthQA" ;
     sc:url "https://github.com/Cao-Labs/SynthQA.git" .
 
+<https://bio.tools/synthstrip> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_3067,
+        edam:topic_3384,
+        edam:topic_3444 ;
+    sc:citation <https://doi.org/10.1016/J.NEUROIMAGE.2022.119474>,
+        "pubmed:35842095" ;
+    sc:description "The removal of non-brain signal from magnetic resonance imaging (MRI) data, known as skull-stripping, is an integral component of many neuroimage analysis streams. Despite their abundance, popular classical skull-stripping methods are usually tailored to images with specific acquisition properties, namely near-isotropic resolution and T1-weighted (T1w) MRI contrast, which are prevalent in research settings. As a result, existing tools tend to adapt poorly to other image types, such as stacks of thick slices acquired with fast spin-echo (FSE) MRI that are common in the clinic. While learning-based approaches for brain extraction have gained traction in recent years, these methods face a similar burden, as they are only effective for image types seen during the training procedure. To achieve robust skull-stripping across a landscape of imaging protocols, we introduce SynthStrip, a rapid, learning-based brain-extraction tool" ;
+    sc:featureList edam:operation_3443 ;
+    sc:isAccessibleForFree true ;
+    sc:name "SynthStrip" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://w3id.org/synthstrip" .
+
 <https://bio.tools/syntoxprofiler> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0208,
         edam:topic_2640,
@@ -462433,14 +491459,14 @@ SynToxProfiler: an interactive analysis tool for drug combination prioritization
 
 <https://bio.tools/syntren> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Gene expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ] ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Gene expression data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Pathway or network" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3474 ;
     sc:citation <https://doi.org/10.1186/1471-2105-7-43> ;
@@ -462456,7 +491482,7 @@ SynToxProfiler: an interactive analysis tool for drug combination prioritization
     sc:url "http://bioinformatics.intec.ugent.be/kmarchal/SynTReN/index.html" .
 
 <https://bio.tools/synttax> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0637,
@@ -462476,22 +491502,22 @@ SynToxProfiler: an interactive analysis tool for drug combination prioritization
 
 <https://bio.tools/syntview> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ],
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Annotation track" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0872" ;
-            sc:name "Phylogenetic tree" ;
-            sc:sameAs "http://edamontology.org/data_0872" ],
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Sequence variations" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ] ;
+            sc:additionalType "http://edamontology.org/data_0872" ;
+            sc:encodingFormat "http://edamontology.org/format_1910" ;
+            sc:name "Phylogenetic tree" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3603" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0797,
@@ -462512,8 +491538,31 @@ SynToxProfiler: an interactive analysis tool for drug combination prioritization
     sc:softwareVersion "1" ;
     sc:url "http://genopole.pasteur.fr/SynTView/" .
 
+<https://bio.tools/synvar> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_0203,
+        edam:topic_2885,
+        edam:topic_3068,
+        edam:topic_3577 ;
+    sc:citation <https://doi.org/10.3233/SHTI220603>,
+        "pubmed:35612222" ;
+    sc:description "Designing an Optimal Expansion Method to Improve the Recall of a Genomic Variant Curation-Support Service." ;
+    sc:featureList edam:operation_0479,
+        edam:operation_2422,
+        edam:operation_3225,
+        edam:operation_3227,
+        edam:operation_3435 ;
+    sc:isAccessibleForFree true ;
+    sc:name "SynVar" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://goldorak.hesge.ch/synvar/" .
+
 <https://bio.tools/synvep> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0622,
@@ -462535,7 +491584,7 @@ SynToxProfiler: an interactive analysis tool for drug combination prioritization
         "Zishuo Zeng" .
 
 <https://bio.tools/synwiki> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
@@ -462557,8 +491606,28 @@ SynToxProfiler: an interactive analysis tool for drug combination prioritization
     sc:softwareHelp <http://synwiki.uni-goettingen.de/v1/FAQ> ;
     sc:url "http://synwiki.uni-goettingen.de/" .
 
+<https://bio.tools/syotti> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0632,
+        edam:topic_2885,
+        edam:topic_3174,
+        edam:topic_3673 ;
+    sc:citation <https://doi.org/10.1101/2021.11.05.467426> ;
+    sc:description "This is a set of command line tools to compute a cover for a set of reference sequences using short bait strings." ;
+    sc:featureList edam:operation_0363,
+        edam:operation_3211,
+        edam:operation_3695 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-2.0" ;
+    sc:name "syotti" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/jnalanko/syotti" .
+
 <https://bio.tools/sys-mut> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0203,
@@ -462580,7 +491649,7 @@ SynToxProfiler: an interactive analysis tool for drug combination prioritization
     sc:url "https://github.com/skhalighicase/SYS-Mut" .
 
 <https://bio.tools/sysbio_modelica_library> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2259 ;
     sc:author "Damjana Rozman",
@@ -462605,7 +491674,7 @@ SynToxProfiler: an interactive analysis tool for drug combination prioritization
     biotools:primaryContact "Miha Moškon" .
 
 <https://bio.tools/sysbions> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2259 ;
     sc:citation "pubmed:25399028" ;
@@ -462617,7 +491686,7 @@ SynToxProfiler: an interactive analysis tool for drug combination prioritization
     sc:url "http://www.theosysbio.bio.ic.ac.uk/resources/sysbions/" .
 
 <https://bio.tools/sysrev> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Library",
         "Web application" ;
@@ -462635,7 +491704,7 @@ SynToxProfiler: an interactive analysis tool for drug combination prioritization
     sc:url "http://Sysrev.com" .
 
 <https://bio.tools/syssvm2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2640,
         edam:topic_3053,
@@ -462657,7 +491726,7 @@ To download sysSVM2, clone this repository. sysSVM2 is implemented in R. In this
     sc:url "https://github.com/ciccalab/sysSVM2" .
 
 <https://bio.tools/system_biology_platform> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_3391 ;
     sc:description "Platform for collaborative research, enabling sharing of workflows and computational tools tailored for lead compound discovery in infectious diseases through four main technical objectives: Access to large shared collections of compounds, assays and knowledge; Access to computational tools that can be tailored for lead compound discovery in infectious diseases; A systems biology approach to infectious diseases drug discovery; Sharing specialised analytical workflows." ;
@@ -462670,14 +491739,14 @@ To download sysSVM2, clone this repository. sysSVM2 is implemented in R. In this
 
 <https://bio.tools/systempiper> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1383" ;
-            sc:name "Sequence alignment (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1383" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1383" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
+            sc:name "Sequence alignment (nucleic acid)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3169,
@@ -462699,7 +491768,7 @@ To download sysSVM2, clone this repository. sysSVM2 is implemented in R. In this
     biotools:primaryContact <http://orcid.org/0000-0003-0710-3777> .
 
 <https://bio.tools/systems-biology-toolbox-ode-generator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2259,
         edam:topic_3315,
@@ -462716,7 +491785,7 @@ To download sysSVM2, clone this repository. sysSVM2 is implemented in R. In this
     biotools:primaryContact "Ilya Chorny" .
 
 <https://bio.tools/syzygy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2885 ;
     sc:citation "pubmed:20818383" ;
@@ -462729,7 +491798,7 @@ To download sysSVM2, clone this repository. sysSVM2 is implemented in R. In this
     biotools:primaryContact "Syzygy Help" .
 
 <https://bio.tools/t-analyst> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0176,
@@ -462746,8 +491815,33 @@ To download sysSVM2, clone this repository. sysSVM2 is implemented in R. In this
     sc:softwareHelp <https://sites.google.com/site/tanalystprogram/download/tutorial> ;
     sc:url "https://sites.google.com/site/tanalystprogram/" .
 
+<https://bio.tools/t-ardis> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0202,
+        edam:topic_3336,
+        edam:topic_3373,
+        edam:topic_3378 ;
+    sc:citation <https://doi.org/10.1093/DATABASE/BAAB068>,
+        "pmcid:PMC8533369",
+        "pubmed:34679164" ;
+    sc:description "Mining drug-target and drug-adverse drug reaction databases to identify target-adverse drug reaction relationships." ;
+    sc:featureList edam:operation_2421,
+        edam:operation_2422,
+        edam:operation_3431,
+        edam:operation_3938 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Apache-2.0" ;
+    sc:name "T-ARDIS" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://www.bioinsilico.org/T-ARDIS" .
+
 <https://bio.tools/t-baps> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_3053,
@@ -462762,7 +491856,7 @@ To download sysSVM2, clone this repository. sysSVM2 is implemented in R. In this
     sc:url "http://www.helsinki.fi/bsg/software/T-BAPS/" .
 
 <https://bio.tools/t-bas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0097,
@@ -462777,7 +491871,7 @@ To download sysSVM2, clone this repository. sysSVM2 is implemented in R. In this
     biotools:primaryContact "Support" .
 
 <https://bio.tools/t-cell-classification> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_2830,
         edam:topic_3382,
@@ -462800,7 +491894,7 @@ Classifying T cell activity in autofluorescence intensity images with convolutio
     sc:url "https://github.com/gitter-lab/t-cell-classification" .
 
 <https://bio.tools/t-cnv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_2885,
         edam:topic_3168 ;
@@ -462815,7 +491909,7 @@ T-CNV is a Python library and command-line software toolkit to infer and visuali
     sc:url "https://github.com/Top-Gene/T-CNV" .
 
 <https://bio.tools/t-cov> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -462839,7 +491933,7 @@ T-CNV is a Python library and command-line software toolkit to infer and visuali
     sc:url "https://t-cov.hse.ru" .
 
 <https://bio.tools/t-lex> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0798 ;
     sc:citation "pubmed:21177644" ;
@@ -462852,7 +491946,7 @@ T-CNV is a Python library and command-line software toolkit to infer and visuali
     biotools:primaryContact "Anna-Sophie Fiston-Lavier" .
 
 <https://bio.tools/t-lex2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0625,
@@ -462870,7 +491964,7 @@ T-CNV is a Python library and command-line software toolkit to infer and visuali
     biotools:primaryContact "Anna-Sophie Fiston-Lavier" .
 
 <https://bio.tools/t-profiler> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0621 ;
@@ -462889,7 +491983,7 @@ T-CNV is a Python library and command-line software toolkit to infer and visuali
     biotools:primaryContact "Harmen J. Bussemaker" .
 
 <https://bio.tools/t-reg_comparator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0204,
@@ -462910,7 +492004,7 @@ T-CNV is a Python library and command-line software toolkit to infer and visuali
     biotools:primaryContact "roepcke@molgen.mpg.de" .
 
 <https://bio.tools/t-rex> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0194,
@@ -462933,7 +492027,7 @@ T-CNV is a Python library and command-line software toolkit to infer and visuali
     biotools:primaryContact "Vladimir Makarenkov" .
 
 <https://bio.tools/t-rmsd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
@@ -462951,7 +492045,7 @@ T-CNV is a Python library and command-line software toolkit to infer and visuali
     biotools:primaryContact "Cedric Notredame" .
 
 <https://bio.tools/t-sne> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0114,
         edam:topic_0199,
@@ -462978,7 +492072,7 @@ Quality control using infoMeasures.R. Evaluation of method and parameter choices
     sc:url "https://github.com/systemsgenomics/t-sne.cancermaps" .
 
 <https://bio.tools/t-test-boxplots-genes-compounds-healthy-disease> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2269,
@@ -462997,7 +492091,7 @@ Quality control using infoMeasures.R. Evaluation of method and parameter choices
     biotools:primaryContact "Dr. Soumya Banerjee" .
 
 <https://bio.tools/t-weon> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0602,
         edam:topic_0659,
@@ -463012,7 +492106,7 @@ Quality control using infoMeasures.R. Evaluation of method and parameter choices
     sc:url "https://weon.readthedocs.io" .
 
 <https://bio.tools/t1dbase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0634,
@@ -463036,7 +492130,7 @@ Quality control using infoMeasures.R. Evaluation of method and parameter choices
         "Oliver S. Burren" .
 
 <https://bio.tools/t2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_3179 ;
@@ -463050,16 +492144,39 @@ Quality control using infoMeasures.R. Evaluation of method and parameter choices
     sc:softwareVersion "1.3" ;
     sc:url "http://timat2.sourceforge.net/" .
 
+<https://bio.tools/t2-dag> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0602,
+        edam:topic_0634,
+        edam:topic_2269,
+        edam:topic_3517 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAB770>,
+        "pmcid:PMC8796375",
+        "pubmed:34755844" ;
+    sc:description "A powerful test for differentially expressed gene pathways via graph-informed structural equation modeling." ;
+    sc:featureList edam:operation_3223,
+        edam:operation_3435,
+        edam:operation_3928 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "T2-DAG" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/Jin93/T2DAG" .
+
 <https://bio.tools/t2d_converter> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3245" ;
+            sc:name "Mass spectrometry spectra" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3654" ;
+            sc:name "Mass spectrometry spectra" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -463069,7 +492186,7 @@ Quality control using infoMeasures.R. Evaluation of method and parameter choices
     sc:url "http://www.pepchem.org" .
 
 <https://bio.tools/t346hunter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0654,
@@ -463088,7 +492205,7 @@ Quality control using infoMeasures.R. Evaluation of method and parameter choices
         "Pedro M. Martínez García" .
 
 <https://bio.tools/t3_mm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3053,
         edam:topic_3301 ;
@@ -463106,7 +492223,7 @@ Quality control using infoMeasures.R. Evaluation of method and parameter choices
     biotools:primaryContact "Yejun Wang" .
 
 <https://bio.tools/t3db> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0602,
@@ -463128,7 +492245,7 @@ Quality control using infoMeasures.R. Evaluation of method and parameter choices
         "Wishart Lab's twitter" .
 
 <https://bio.tools/t4se-xgb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3474,
         edam:topic_3510 ;
@@ -463142,8 +492259,33 @@ Type IV secreted effectors (T4SEs) can be translocated into the cytosol of host
     sc:name "T4SE-XGB" ;
     sc:url "https://github.com/CT001002/T4SE-XGB" .
 
+<https://bio.tools/t4sefinder> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0121,
+        edam:topic_0203,
+        edam:topic_0621,
+        edam:topic_0623,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1093/BIB/BBAB420>,
+        "pubmed:34657153" ;
+    sc:description "A bioinformatics tool for genome-scale prediction of bacterial type IV secreted effectors using pre-trained protein language model." ;
+    sc:featureList edam:operation_0474,
+        edam:operation_3092,
+        edam:operation_3461 ;
+    sc:isAccessibleForFree true ;
+    sc:name "T4SEfinder" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://tool2-mml.sjtu.edu.cn/T4SEfinder_TAPE/" .
+
 <https://bio.tools/t7> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2259,
         edam:topic_3375,
@@ -463159,7 +492301,7 @@ Type IV secreted effectors (T4SEs) can be translocated into the cytosol of host
     sc:url "http://www.genome.duke.edu/labs/YouLab/software/index.php" .
 
 <https://bio.tools/tCNNS> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2640,
         edam:topic_3336 ;
@@ -463172,7 +492314,7 @@ Type IV secreted effectors (T4SEs) can be translocated into the cytosol of host
     sc:url "https://github.com/Lowpassfilter/tCNNS-Project" .
 
 <https://bio.tools/tREMAP> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0154,
@@ -463195,7 +492337,7 @@ Type IV secreted effectors (T4SEs) can be translocated into the cytosol of host
     biotools:primaryContact "Lei Xie" .
 
 <https://bio.tools/tRFexplorer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0659,
         edam:topic_2640,
@@ -463214,7 +492356,7 @@ tRFexplorer is a public database through which users may display the expression
     sc:url "https://trfexplorer.cloud/" .
 
 <https://bio.tools/tRNA-DL> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0659,
@@ -463233,7 +492375,7 @@ tRFexplorer is a public database through which users may display the expression
     biotools:primaryContact "Stella Gao" .
 
 <https://bio.tools/tRNAviz> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_3382,
@@ -463254,60 +492396,8 @@ tRFexplorer is a public database through which users may display the expression
     sc:url "http://trna.ucsc.edu/tRNAviz/summary/" ;
     biotools:primaryContact <https://orcid.org/0000-0003-3253-6021> .
 
-<https://bio.tools/tRic_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0203,
-        edam:topic_2640,
-        edam:topic_3170 ;
-    sc:citation <https://doi.org/10.1080/15476286.2019.1657744>,
-        "pubmed:31432762" ;
-    sc:description "> NAME (tRic) SIMILAR TO (PUB. DIFFERENT) bio.tools/tric (TRIC) | a user-friendly data portal to explore the expression landscape of tRNAs in human cancers | The TRIC refers to \"tRNA in cancers\". Transfer RNAs (tRNAs) play essential roles in tumorigenesis. The database tRNA in Cancer (TRIC) show the dynamic landscape of tRNAs expression across 31 cancer types and more than 10000 samples from The Cancer Genome Atlas (TCGA). Here we systematically analyzed tRNA expression profiles at gene, codon and amino acid levels and the functional consequence (e.g. patient tumor stage, subtype, and survival). We also try to connect the differentially expression of tRNA and the translational control in tumor" ;
-    sc:featureList edam:operation_0464,
-        edam:operation_2962,
-        edam:operation_2964 ;
-    sc:name "tRic_autogenerated" ;
-    sc:url "https://hanlab.uth.edu/tRic/" .
-
-<https://bio.tools/t_cell_classification> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_2830,
-        edam:topic_3382,
-        edam:topic_3474 ;
-    sc:citation <https://doi.org/10.1101/737346> ;
-    sc:description "> VERY_LOW CONFIDENCE! | > CORRECT NAME OF TOOL COULD ALSO BE 'autofluorescence', 'CNNs', 'pre-trained', 'CNN' | Classifying T cell activity in autofluorescence intensity images with convolutional neural networks | Jupyter notebooks demonstrating a microscopy machine learning image analysis workflow | This repository contains code and data for the manuscript: | Classifying T cell activity in autofluorescence intensity images with convolutional neural networks. Zijie J Wang, Alex J Walsh, Melissa C Skala, Anthony Gitter. bioRxiv 2019. doi:10.1101/737346" ;
-    sc:featureList edam:operation_3552 ;
-    sc:license "BSD-3-Clause-Clear" ;
-    sc:name "t cell classification" ;
-    sc:url "https://github.com/gitter-lab/t-cell-classification" .
-
-<https://bio.tools/t_cell_classification_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_2229,
-        edam:topic_2830,
-        edam:topic_3382,
-        edam:topic_3407,
-        edam:topic_3474 ;
-    sc:citation <https://doi.org/10.1002/JBIO.201960050>,
-        "pubmed:31661592" ;
-    sc:description """Classifying T cell activity in autofluorescence intensity images with convolutional neural networks.
-
-Jupyter notebooks demonstrating a microscopy machine learning image analysis workflow.
-
-This repository contains code and data for the manuscript:.
-
-Classifying T cell activity in autofluorescence intensity images with convolutional neural networks. Zijie J Wang, Alex J Walsh, Melissa C Skala, Anthony Gitter. bioRxiv 2019. doi:10.1101/737346.
-
-||| NAME EQUAL TO (PUB. DIFFERENT) bio.tools/t_cell_classification.
-
-||| COMMON LINK WITH (PUB. & NAME DIFFERENT) bio.tools/t_cell_classification (GITHUB.COM/gitter-lab/t-cell-classification).
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'CNNs', 'autofluorescence', 'previously-extracted', 'antigen-induced'""" ;
-    sc:featureList edam:operation_0337,
-        edam:operation_3443,
-        edam:operation_3704 ;
-    sc:license "BSD-3-Clause-Clear" ;
-    sc:name "t cell classification_autogenerated" ;
-    sc:url "https://github.com/gitter-lab/t-cell-classification" .
-
 <https://bio.tools/ta-net> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_3384,
         edam:topic_3452,
@@ -463324,7 +492414,7 @@ Classifying T cell activity in autofluorescence intensity images with convolutio
         "Zhenmei Yu" .
 
 <https://bio.tools/ta-si_prediction> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0659 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/bts311> ;
@@ -463339,7 +492429,7 @@ Classifying T cell activity in autofluorescence intensity images with convolutio
     biotools:primaryContact "Forum" .
 
 <https://bio.tools/taasrad19> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3168,
         edam:topic_3382,
         edam:topic_3474 ;
@@ -463354,7 +492444,7 @@ Classifying T cell activity in autofluorescence intensity images with convolutio
     sc:url "https://github.com/MPBA/TAASRAD19" .
 
 <https://bio.tools/tab2mage> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0219,
@@ -463370,7 +492460,7 @@ Classifying T cell activity in autofluorescence intensity images with convolutio
     sc:url "http://tab2mage.sourceforge.net/" .
 
 <https://bio.tools/taba-statistics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0203,
@@ -463391,14 +492481,12 @@ Classifying T cell activity in autofluorescence intensity images with convolutio
 
 <https://bio.tools/tabhu> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:name "Protein sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:name "Protein structure" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0123 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btt369> ;
@@ -463415,7 +492503,7 @@ Classifying T cell activity in autofluorescence intensity images with convolutio
     biotools:primaryContact "Pier Paolo Olimpieri" .
 
 <https://bio.tools/tabix> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description """Tabix indexes a TAB-delimited genome position file in.tab.bgz and creates an index file (in.tab.bgz.tbi or in.tab.bgz.csi) when region is absent from the command-line. The input data file must be position sorted and compressed by bgzip which has a gzip(1) like interface.
 
 After indexing, tabix is able to quickly retrieve data lines overlapping regions specified in the format "chr:beginPos-endPos". (Coordinates specified in this region format are 1-based and inclusive.)
@@ -463427,7 +492515,7 @@ The tabix (.tbi) and BAI index formats can handle individual chromosomes up to 5
     sc:url "http://www.htslib.org/doc/tabix.html" .
 
 <https://bio.tools/table> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102 ;
     sc:description "Take the output from MLINK or LINKMAP and tabulate it in a more easily digestible form. It can also produce files suitable for graphing lod scores and for input to HOMOG, BTEST and FASTMAP." ;
@@ -463440,14 +492528,14 @@ The tabix (.tbi) and BAI index formats can handle individual chromosomes up to 5
 
 <https://bio.tools/tableannotator> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2526" ;
-            sc:name "Text data" ;
-            sc:sameAs "http://edamontology.org/data_2526" ] ;
+            sc:additionalType "http://edamontology.org/data_2526" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Text data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2080" ;
-            sc:name "Database search results" ;
-            sc:sameAs "http://edamontology.org/data_2080" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2080" ;
+            sc:encodingFormat "http://edamontology.org/format_2066" ;
+            sc:name "Database search results" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3336,
         edam:topic_3379 ;
@@ -463471,7 +492559,7 @@ The tabix (.tbi) and BAI index formats can handle individual chromosomes up to 5
     biotools:primaryContact "Nikola Milosevic" .
 
 <https://bio.tools/tableone> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3379 ;
     sc:citation <https://doi.org/10.1136/EBMENTAL-2020-300162>,
@@ -463484,7 +492572,7 @@ The tabix (.tbi) and BAI index formats can handle individual chromosomes up to 5
     sc:url "https://esm.uoi.gr/shiny/tableone/" .
 
 <https://bio.tools/tableparser> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0196 ;
@@ -463499,7 +492587,7 @@ The tabix (.tbi) and BAI index formats can handle individual chromosomes up to 5
     sc:url "http://www.personal.psu.edu/jhm10/Vera/SoftwareC.html" .
 
 <https://bio.tools/tablet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0625,
@@ -463516,7 +492604,7 @@ The tabix (.tbi) and BAI index formats can handle individual chromosomes up to 5
     biotools:primaryContact "June Johnston" .
 
 <https://bio.tools/tabloid_proteome> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
         edam:topic_0128,
@@ -463537,7 +492625,7 @@ Select species: Homo sapiens (Human) Mus musculus (Mouse).""" ;
     sc:url "http://iomics.ugent.be/tabloidproteome" .
 
 <https://bio.tools/tabusearch> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654,
@@ -463550,8 +492638,32 @@ Select species: Homo sapiens (Human) Mus musculus (Mouse).""" ;
     sc:softwareHelp <http://bio.cs.put.poznan.pl/research_fields/5193ee2f9dfb89b38b000001> ;
     sc:url "http://bio.cs.put.poznan.pl/programs/5191f1e39dfb89a857000001" .
 
+<https://bio.tools/tacos> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:name "Nucleic acid sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0091,
+        edam:topic_0659,
+        edam:topic_2229,
+        edam:topic_3170,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.1093/BIB/BBAC243>,
+        "pmcid:PMC9294414",
+        "pubmed:35753698" ;
+    sc:description "A novel approach for accurate prediction of cell-specific long noncoding RNAs subcellular localization." ;
+    sc:featureList edam:operation_2489,
+        edam:operation_3937 ;
+    sc:isAccessibleForFree true ;
+    sc:name "TACOS" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://balalab-skku.org/TACOS" .
+
 <https://bio.tools/tacs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203 ;
     sc:citation <https://doi.org/10.1186/s12859-018-2072-y> ;
@@ -463568,7 +492680,7 @@ Select species: Homo sapiens (Human) Mus musculus (Mouse).""" ;
     biotools:primaryContact "Yoichi Takenaka" .
 
 <https://bio.tools/tact> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0203,
@@ -463588,7 +492700,7 @@ Select species: Homo sapiens (Human) Mus musculus (Mouse).""" ;
     sc:url "http://jbirc.jbic.or.jp/tact/" .
 
 <https://bio.tools/tactics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0611,
         edam:topic_3382,
@@ -463604,7 +492716,7 @@ Select species: Homo sapiens (Human) Mus musculus (Mouse).""" ;
     sc:url "http://www.tactics-toolbox.com/" .
 
 <https://bio.tools/tactics-cryptic> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0154,
@@ -463625,7 +492737,7 @@ This code finds the locations of possible cryptic pockets within MD trajectories
     sc:url "https://github.com/Albert-Lau-Lab/tactics_protein_analysis" .
 
 <https://bio.tools/tactics-stereotactic> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3382,
         edam:topic_3421 ;
@@ -463642,7 +492754,7 @@ Tactics is a prototype application for assigning target coordinates to locations
     sc:url "https://github.com/atamai/tactics" .
 
 <https://bio.tools/tactics-toolbox> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -463659,22 +492771,8 @@ Tactics is a prototype application for assigning target coordinates to locations
     sc:url "https://www.mathworks.com/matlabcentral/fileexchange/39920-tactics-toolbox" ;
     biotools:primaryContact "Raz Shimoni" .
 
-<https://bio.tools/tactile_glove> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3068 ;
-    sc:citation <https://doi.org/10.3390/S19225029>,
-        "pmcid:PMC6891499",
-        "pubmed:31752187" ;
-    sc:description """Proposal of the Tactile Glove Device.
-
-A tactile glove that let's you touch a virtual object and interact with it.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'tactile'""" ;
-    sc:license "MIT" ;
-    sc:name "tactile glove" ;
-    sc:url "https://github.com/danielholanda/Tactile-Glove" .
-
 <https://bio.tools/tad> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3518 ;
@@ -463688,32 +492786,39 @@ A tactile glove that let's you touch a virtual object and interact with it.
 
 <https://bio.tools/tada-amplicon> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1234" ;
-            sc:name "Sequence set (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1234" ],
+            sc:additionalType "http://edamontology.org/data_1240" ;
+            sc:encodingFormat "http://edamontology.org/format_1957" ;
+            sc:name "PCR primers" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3494" ;
-            sc:name "DNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3494" ],
+            sc:additionalType "http://edamontology.org/data_1234" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence set (nucleic acid)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1240" ;
-            sc:name "PCR primers" ;
-            sc:sameAs "http://edamontology.org/data_1240" ] ;
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "DNA sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1383" ;
-            sc:name "Nucleic acid sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_1383" ],
+            sc:additionalType "http://edamontology.org/data_3917" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Count matrix" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3917" ;
-            sc:name "Count matrix" ;
-            sc:sameAs "http://edamontology.org/data_3917" ],
+            sc:additionalType "http://edamontology.org/data_1383" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Nucleic acid sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3707" ;
-            sc:name "Biodiversity data" ;
-            sc:sameAs "http://edamontology.org/data_3707" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3707" ;
+            sc:name "Biodiversity data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_3697 ;
+    sc:author "Gerrit Botha",
+        "Jessica Holmes",
+        "Katie Lennard",
+        "Lindsay Clark" ;
+    sc:contributor "Gerrit Botha",
+        "Jessica Holmes",
+        "Katie Lennard",
+        "Lindsay Clark" ;
     sc:description "Targeted Amplicon Diversity Analysis - a DADA2-focused Nextflow workflow for any targeted amplicon region.  Microbiome, amplicon analysis, 16S, 18S, ITS, COI, PacBio, Shoreline, Loop" ;
     sc:featureList edam:operation_3192,
         edam:operation_3237,
@@ -463723,10 +492828,34 @@ A tactile glove that let's you touch a virtual object and interact with it.
     sc:name "TADA" ;
     sc:operatingSystem "Linux",
         "Mac" ;
-    sc:url "https://github.com/h3abionet/TADA" .
+    sc:url "https://github.com/h3abionet/TADA" ;
+    biotools:primaryContact "Christopher Fields" .
+
+<https://bio.tools/tada_cnv> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0621,
+        edam:topic_3474,
+        edam:topic_3512,
+        edam:topic_3673,
+        edam:topic_3958 ;
+    sc:citation <https://doi.org/10.1186/S13059-022-02631-Z>,
+        "pmcid:PMC8886976",
+        "pubmed:35232478" ;
+    sc:description "Machine learning tool for functional annotation-based prioritisation of pathogenic CNVs." ;
+    sc:featureList edam:operation_3225,
+        edam:operation_3226,
+        edam:operation_3461 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "TADA" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/jakob-he/TADA/" .
 
 <https://bio.tools/tadb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0154,
@@ -463745,7 +492874,7 @@ A tactile glove that let's you touch a virtual object and interact with it.
     biotools:primaryContact "Hong-Yu OU" .
 
 <https://bio.tools/tadbd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0749 ;
     sc:citation <https://doi.org/10.2144/BTN-2019-0165>,
         "pubmed:32252545" ;
@@ -463760,14 +492889,14 @@ A topologically associated domain (TAD) is a self-interacting genomic block. Det
 
 <https://bio.tools/tadbit> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0848" ;
-            sc:name "Raw sequence" ;
-            sc:sameAs "http://edamontology.org/data_0848" ] ;
+            sc:additionalType "http://edamontology.org/data_0848" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Raw sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0602,
@@ -463786,7 +492915,7 @@ A topologically associated domain (TAD) is a self-interacting genomic block. Det
     biotools:primaryContact "Marc A. Marti-Renom" .
 
 <https://bio.tools/tadcompare> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0654,
         edam:topic_3170,
@@ -463804,8 +492933,31 @@ TADCompare is an R package for differential Topologically Associated Domain (TAD
     sc:name "TADCompare" ;
     sc:url "https://github.com/dozmorovlab/TADCompare" .
 
+<https://bio.tools/tadeus2> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0622,
+        edam:topic_0625,
+        edam:topic_3169,
+        edam:topic_3175,
+        edam:topic_3676 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAC318>,
+        "pmcid:PMC9252839",
+        "pubmed:35524567" ;
+    sc:description "A web server facilitating the clinical diagnosis by pathogenicity assessment of structural variations disarranging 3D chromatin structure." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_2436,
+        edam:operation_3226 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "TADeus2" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://tadeus2.mimuw.edu.pl" .
+
 <https://bio.tools/tadpole> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0621,
         edam:topic_0654,
@@ -463825,8 +492977,30 @@ TADpole is a computational tool designed to identify and analyze the entire hier
     sc:name "TADpole" ;
     sc:url "https://github.com/3DGenomes/TADpole" .
 
+<https://bio.tools/tadreg> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0196,
+        edam:topic_0621,
+        edam:topic_0749,
+        edam:topic_3169 ;
+    sc:citation <https://doi.org/10.1186/S12859-022-04614-0>,
+        "pmcid:PMC8892791",
+        "pubmed:35236295" ;
+    sc:description "A versatile regression framework for TAD identification, differential analysis and rearranged 3D genome prediction." ;
+    sc:featureList edam:operation_3435,
+        edam:operation_3501,
+        edam:operation_3659 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "TADreg" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/raphaelmourad/TADreg" .
+
 <https://bio.tools/tadtree> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0622,
@@ -463842,7 +493016,7 @@ TADpole is a computational tool designed to identify and analyze the entire hier
     sc:url "http://compbio.cs.brown.edu/projects/tadtree/" .
 
 <https://bio.tools/taec> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0637,
@@ -463858,7 +493032,7 @@ TADpole is a computational tool designed to identify and analyze the entire hier
     sc:url "http://cals.arizona.edu/~anling/software.htm" .
 
 <https://bio.tools/tag> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3174,
@@ -463872,7 +493046,7 @@ TADpole is a computational tool designed to identify and analyze the entire hier
     sc:url "http://omics.informatics.indiana.edu/TAG/" .
 
 <https://bio.tools/tag-db> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3168 ;
@@ -463886,7 +493060,7 @@ TADpole is a computational tool designed to identify and analyze the entire hier
     sc:url "https://code.google.com/p/tag-db/" .
 
 <https://bio.tools/tag-seq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0632,
         edam:topic_0654,
@@ -463909,7 +493083,7 @@ TADpole is a computational tool designed to identify and analyze the entire hier
     sc:url "https://github.com/zhoujj2013/Tag-seq" .
 
 <https://bio.tools/tagcleaner> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3174,
         edam:topic_3308 ;
@@ -463926,7 +493100,7 @@ TADpole is a computational tool designed to identify and analyze the entire hier
     biotools:primaryContact "Schmieder R." .
 
 <https://bio.tools/tagcna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0654,
@@ -463942,7 +493116,7 @@ TADpole is a computational tool designed to identify and analyze the entire hier
     sc:url "http://sourceforge.net/projects/tagcna/" .
 
 <https://bio.tools/tagdust> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3572 ;
     sc:citation "pubmed:19737799" ;
@@ -463955,7 +493129,7 @@ TADpole is a computational tool designed to identify and analyze the entire hier
     biotools:primaryContact "TagDust Support" .
 
 <https://bio.tools/tagdust2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0102,
@@ -463974,7 +493148,7 @@ TADpole is a computational tool designed to identify and analyze the entire hier
     biotools:primaryContact "Timo Lassmann" .
 
 <https://bio.tools/taggd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654,
@@ -463990,7 +493164,7 @@ TADpole is a computational tool designed to identify and analyze the entire hier
     sc:url "https://github.com/pelinakan/UBD.git" .
 
 <https://bio.tools/tagident> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121 ;
@@ -464005,7 +493179,7 @@ TADpole is a computational tool designed to identify and analyze the entire hier
     biotools:primaryContact "ExPASy helpdesk" .
 
 <https://bio.tools/tagimpute> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0654,
@@ -464018,8 +493192,32 @@ TADpole is a computational tool designed to identify and analyze the entire hier
     sc:softwareHelp <http://dlin.web.unc.edu/software/tagimpute-2/> ;
     sc:url "http://dlin.web.unc.edu/software/tagimpute-2/" .
 
+<https://bio.tools/tagopsin> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0089,
+        edam:topic_0621,
+        edam:topic_0637,
+        edam:topic_2814,
+        edam:topic_3366 ;
+    sc:citation <https://doi.org/10.1186/S12859-021-04429-5>,
+        "pmcid:PMC8541804",
+        "pubmed:34688246" ;
+    sc:description "Data(base) integration using the data warehousing approach." ;
+    sc:featureList edam:operation_0478,
+        edam:operation_2406,
+        edam:operation_2421,
+        edam:operation_2422 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "TAGOPSIN" ;
+    sc:operatingSystem "Linux",
+        "Mac" ;
+    sc:softwareHelp <https://github.com/ebundhoo/TAGOPSIN/blob/main/User_Manual.pdf> ;
+    sc:url "https://github.com/ebundhoo/TAGOPSIN" .
+
 <https://bio.tools/tags> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3053 ;
     sc:description "Time-series Analysis for Gene Set analyses gene set enrichment for expression time series, which can incorporate existing knowledge and analyze the dynamic property of a group of genes that have functional or structural associations." ;
@@ -464030,7 +493228,7 @@ TADpole is a computational tool designed to identify and analyze the entire hier
     sc:url "http://bioinfo.au.tsinghua.edu.cn/software/TAGS/" .
 
 <https://bio.tools/tagseqtools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0769,
         edam:topic_3170,
@@ -464049,30 +493247,30 @@ We introduce TagSeqTools as a flexible, general pipeline for facilitating the id
 
 <https://bio.tools/tagtog> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3671" ;
-            sc:name "Text" ;
-            sc:sameAs "http://edamontology.org/data_3671" ],
+            sc:additionalType "http://edamontology.org/data_2526" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Text data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3671" ;
-            sc:name "Text" ;
-            sc:sameAs "http://edamontology.org/data_3671" ],
+            sc:additionalType "http://edamontology.org/data_3671" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Text" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2526" ;
-            sc:name "Text data" ;
-            sc:sameAs "http://edamontology.org/data_2526" ],
+            sc:additionalType "http://edamontology.org/data_3671" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Text" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2526" ;
-            sc:name "Text data" ;
-            sc:sameAs "http://edamontology.org/data_2526" ] ;
+            sc:additionalType "http://edamontology.org/data_2526" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Text data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2526" ;
-            sc:name "Text data" ;
-            sc:sameAs "http://edamontology.org/data_2526" ],
+            sc:additionalType "http://edamontology.org/data_2526" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Text data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2526" ;
-            sc:name "Text data" ;
-            sc:sameAs "http://edamontology.org/data_2526" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2526" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Text data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0218 ;
@@ -464093,7 +493291,7 @@ We introduce TagSeqTools as a flexible, general pipeline for facilitating the id
     biotools:primaryContact "tagtog" .
 
 <https://bio.tools/taguchiarray> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:description "This algorithm provides the Orthogonal(Taguchi) Array with inputs:  Q (the number of the levels) and N (the number of the factors)." ;
     sc:isAccessibleForFree true ;
@@ -464105,8 +493303,37 @@ We introduce TagSeqTools as a flexible, general pipeline for facilitating the id
     sc:url "https://www.mathworks.com/matlabcentral/fileexchange/71628-taguchiarray" ;
     biotools:primaryContact "Chixin Xiao" .
 
+<https://bio.tools/tailer> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0659,
+        edam:topic_0769,
+        edam:topic_3170,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.1261/rna.079071.121>,
+        "pmcid:PMC9014879",
+        "pubmed:35181644" ;
+    sc:description "A Pipeline for Sequencing-Based Analysis of Non-Polyadenylated RNA 3’ End Processing." ;
+    sc:featureList edam:operation_0363,
+        edam:operation_0496,
+        edam:operation_3192,
+        edam:operation_3799 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "Tailer" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/TimNicholsonShaw/tailer" .
+
 <https://bio.tools/tailfindr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0091 ;
     sc:citation <https://doi.org/10.1261/rna.071332.119> ;
@@ -464117,7 +493344,7 @@ We introduce TagSeqTools as a flexible, general pipeline for facilitating the id
     sc:url "https://github.com/adnaniazi/tailfindr" .
 
 <https://bio.tools/tailor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0605,
@@ -464136,7 +493363,7 @@ It's easiest to install Tailor with the help of the devtools package.""" ;
     sc:url "http://www.github.com/matei-ionita/Tailor" .
 
 <https://bio.tools/tailor-ms> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_3047,
@@ -464155,7 +493382,7 @@ It's easiest to install Tailor with the help of the devtools package.""" ;
         <https://orcid.org/0000-0003-4024-4088> .
 
 <https://bio.tools/tailtimer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0632,
         edam:topic_3386,
         edam:topic_3500 ;
@@ -464170,7 +493397,7 @@ The tail immersion assay is a widely used method for measuring acute thermal pai
     sc:url "https://github.com/chen42/openbehavior/tree/master/tailTimer" .
 
 <https://bio.tools/taipan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196 ;
     sc:citation "pubmed:19535537" ;
@@ -464183,7 +493410,7 @@ The tail immersion assay is a widely used method for measuring acute thermal pai
     biotools:primaryContact "Schmidt B" .
 
 <https://bio.tools/tair> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0203,
@@ -464205,16 +493432,38 @@ The tail immersion assay is a widely used method for measuring acute thermal pai
     biotools:primaryContact "General comments or questions",
         "Seed or DNA stock questions (donations, availability, orders, etc)" .
 
+<https://bio.tools/taiwangenomes> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0622,
+        edam:topic_3303,
+        edam:topic_3337,
+        edam:topic_3673,
+        edam:topic_3958 ;
+    sc:citation <https://doi.org/10.1101/2021.12.23.21268291> ;
+    sc:description "Complete genomic profiles of 1,496 Taiwanese reveal curated medical insights." ;
+    sc:featureList edam:operation_3196,
+        edam:operation_3211,
+        edam:operation_3225,
+        edam:operation_3227,
+        edam:operation_3675 ;
+    sc:isAccessibleForFree true ;
+    sc:name "TaiwanGenomes" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://genomes.tw" .
+
 <https://bio.tools/takeabreak> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2975" ;
-            sc:name "Nucleic acid sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_2975" ] ;
+            sc:additionalType "http://edamontology.org/data_2975" ;
+            sc:encodingFormat "http://edamontology.org/format_2182" ;
+            sc:name "Nucleic acid sequence (raw)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Nucleic acid sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199 ;
     sc:citation <https://doi.org/10.1007/978-3-319-07953-0_10> ;
@@ -464232,7 +493481,7 @@ The tail immersion assay is a widely used method for measuring acute thermal pai
     biotools:primaryContact "Claire Lemaitre" .
 
 <https://bio.tools/talc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3170,
         edam:topic_3308,
@@ -464248,7 +493497,7 @@ TALC: Transcription-Aware Long Read Correction.""" ;
     sc:url "https://gitlab.igh.cnrs.fr/lbroseus/TALC" .
 
 <https://bio.tools/tale> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0089,
         edam:topic_0621,
@@ -464270,7 +493519,7 @@ Output label: hierarchical nodes on directed graphs.""" ;
     sc:url "https://github.com/Shen-Lab/TALE" .
 
 <https://bio.tools/tale-nt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0199,
@@ -464291,7 +493540,7 @@ Output label: hierarchical nodes on directed graphs.""" ;
     biotools:primaryContact "Contact Form" .
 
 <https://bio.tools/talenoffer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0749,
@@ -464310,7 +493559,7 @@ Output label: hierarchical nodes on directed graphs.""" ;
     biotools:primaryContact "Support" .
 
 <https://bio.tools/talklr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0634,
         edam:topic_2229,
@@ -464326,8 +493575,26 @@ talklr (intercellular crossTALK using Ligand-Receptor)uses Kullback-Leibler dive
     sc:name "talklr" ;
     sc:url "https://yuliangwang.shinyapps.io/talklr/" .
 
+<https://bio.tools/tallo> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0610,
+        edam:topic_0780,
+        edam:topic_3071 ;
+    sc:citation <https://doi.org/10.1111/GCB.16302>,
+        "pubmed:35703577" ;
+    sc:description "A global tree allometry and crown architecture database." ;
+    sc:featureList edam:operation_3435 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "Tallo" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/selva-lab-repo/TALLO" .
+
 <https://bio.tools/tally> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btw118> ;
@@ -464345,7 +493612,7 @@ talklr (intercellular crossTALK using Ligand-Receptor)uses Kullback-Leibler dive
         "Julien JORDA" .
 
 <https://bio.tools/tallymer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation "pubmed:18976482" ;
@@ -464359,7 +493626,7 @@ talklr (intercellular crossTALK using Ligand-Receptor)uses Kullback-Leibler dive
     biotools:primaryContact "Doreen Ware" .
 
 <https://bio.tools/tama> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0084,
         edam:topic_0637,
@@ -464381,7 +493648,7 @@ When you run TAMA based on the species rank analysis using the included example
     sc:url "https://github.com/jkimlab/TAMA" .
 
 <https://bio.tools/tamock> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Script" ;
     sc:applicationSubCategory edam:topic_0196,
@@ -464401,7 +493668,7 @@ When you run TAMA based on the species rank analysis using the included example
     biotools:primaryContact <https://orcid.org/0000-0002-0592-7791> .
 
 <https://bio.tools/tandem2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3053,
@@ -464416,14 +493683,14 @@ When you run TAMA based on the species rank analysis using the included example
 
 <https://bio.tools/tandem2xml> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ] ;
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_3711" ;
+            sc:name "Peptide identification" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_3655" ;
+            sc:name "Peptide identification" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121 ;
     sc:citation <https://doi.org/10.1002/prca.201400164>,
@@ -464439,7 +493706,7 @@ When you run TAMA based on the species rank analysis using the included example
     sc:url "http://tools.proteomecenter.org/wiki/index.php?title=Software:Tandem2XML" .
 
 <https://bio.tools/tandemtools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
         edam:topic_0621 ;
@@ -464453,8 +493720,30 @@ When you run TAMA based on the species rank analysis using the included example
     sc:name "TandemTools" ;
     sc:url "https://github.com/ablab/TandemTools" .
 
+<https://bio.tools/tangent> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_2640,
+        edam:topic_2885,
+        edam:topic_3518,
+        edam:topic_3676 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC586>,
+        "pubmed:36040167" ;
+    sc:description "Tangent normalization for somatic copy-number inference in cancer genome analysis." ;
+    sc:featureList edam:operation_0484,
+        edam:operation_3435,
+        edam:operation_3918 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "Tangent" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://github.com/broadinstitute/.github/blob/develop/CODE_OF_CONDUCT.md> ;
+    sc:url "https://github.com/broadinstitute/tangent" .
+
 <https://bio.tools/tanglabcircularrnapipeline> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0099,
@@ -464472,7 +493761,7 @@ When you run TAMA based on the species rank analysis using the included example
     biotools:primaryContact "Fuchou Tang" .
 
 <https://bio.tools/tangle> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0634,
         edam:topic_3474 ;
@@ -464488,7 +493777,7 @@ Predictive capabilities of TANGLE are demonstrated here with an application on t
     sc:url "https://github.com/samuelefiorini/tangle" .
 
 <https://bio.tools/tango> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0081,
@@ -464504,7 +493793,7 @@ Predictive capabilities of TANGLE are demonstrated here with an application on t
     sc:url "http://tango.crg.es/" .
 
 <https://bio.tools/tango-nuclear> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Plug-in" ;
     sc:applicationSubCategory edam:topic_0622,
@@ -464527,7 +493816,7 @@ Predictive capabilities of TANGLE are demonstrated here with an application on t
         "Thomas Boudier" .
 
 <https://bio.tools/tango-taxon> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0637,
         edam:topic_0654,
@@ -464541,7 +493830,7 @@ Predictive capabilities of TANGLE are demonstrated here with an application on t
     sc:url "http://www.lsi.upc.edu/~valiente/tango/" .
 
 <https://bio.tools/tangram> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_3053,
@@ -464556,7 +493845,7 @@ Predictive capabilities of TANGLE are demonstrated here with an application on t
     sc:url "https://github.com/jiantao/Tangram#readme" .
 
 <https://bio.tools/tanric> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_2640,
@@ -464575,7 +493864,7 @@ Predictive capabilities of TANGLE are demonstrated here with an application on t
     biotools:primaryContact "Dr. Han Liang" .
 
 <https://bio.tools/tantigen-2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2640,
@@ -464595,7 +493884,7 @@ Predictive capabilities of TANGLE are demonstrated here with an application on t
     biotools:primaryContact <https://orcid.org/0000-0001-6010-490X> .
 
 <https://bio.tools/tap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2814 ;
     sc:citation <https://doi.org/10.1186/1471-2105-8-155> ;
@@ -464612,7 +493901,7 @@ Predictive capabilities of TANGLE are demonstrated here with an application on t
     biotools:primaryContact "Silvio C.E. Tosatto" .
 
 <https://bio.tools/tap-fmri> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3304,
@@ -464626,7 +493915,7 @@ Predictive capabilities of TANGLE are demonstrated here with an application on t
     biotools:primaryContact <https://orcid.org/0000-0002-4385-065X> .
 
 <https://bio.tools/tap-php> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3474,
         edam:topic_3794 ;
@@ -464642,7 +493931,7 @@ With the widespread usage of Web applications, the security issues of source cod
     sc:url "https://github.com/das-lab/TAP" .
 
 <https://bio.tools/tapas-neuro> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Suite" ;
     sc:applicationSubCategory edam:topic_0108,
@@ -464662,7 +493951,7 @@ TAPAS is a collection of algorithms and software tools that are developed by the
     biotools:primaryContact "Klaas E. Stephan" .
 
 <https://bio.tools/tapestry> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
         edam:topic_0621,
@@ -464681,7 +493970,7 @@ Tapestry is a tool to validate and edit small eukaryotic genome assemblies using
     sc:url "https://anaconda.org/bioconda/tapestry" .
 
 <https://bio.tools/tapioca> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0166,
@@ -464698,14 +493987,13 @@ Tapestry is a tool to validate and edit small eukaryotic genome assemblies using
 
 <https://bio.tools/tapir> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1234" ;
-            sc:name "Sequence set (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1234" ] ;
+            sc:additionalType "http://edamontology.org/data_1234" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence set (nucleic acid)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1276" ;
-            sc:name "Nucleic acid features" ;
-            sc:sameAs "http://edamontology.org/data_1276" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1276" ;
+            sc:name "Nucleic acid features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0160 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btq233> ;
@@ -464722,14 +494010,14 @@ Tapestry is a tool to validate and edit small eukaryotic genome assemblies using
 
 <https://bio.tools/tapir_cbs> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1212" ;
+            sc:name "Sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:author "Laurent Gautier" ;
@@ -464748,7 +494036,7 @@ Tapestry is a tool to validate and edit small eukaryotic genome assemblies using
     biotools:primaryContact "Ole Lund" .
 
 <https://bio.tools/tappas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3170,
         edam:topic_3308,
@@ -464773,7 +494061,7 @@ TappAS is a bioinformatics application containing a wide range of analyses to ev
     sc:url "https://app.tappas.org" .
 
 <https://bio.tools/tappred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -464787,11 +494075,11 @@ TappAS is a bioinformatics application containing a wide range of analyses to ev
         "Mac",
         "Windows" ;
     sc:softwareHelp <http://crdd.osdd.net/raghava/tappred/help.html> ;
-    sc:url "http://www.imtech.res.in/raghava/tappred/" ;
+    sc:url "http://webs.iiitd.edu.in/raghava/tappred/" ;
     biotools:primaryContact "Dr G P S Raghava" .
 
 <https://bio.tools/tapredictor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2830,
@@ -464810,7 +494098,7 @@ Paste a single sequence or several sequences in FASTA format to use the predicto
     sc:url "https://tapredictor.herokuapp.com/" .
 
 <https://bio.tools/tapyr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3673 ;
     sc:citation "pubmed:21672185" ;
@@ -464826,7 +494114,7 @@ Paste a single sequence or several sequences in FASTA format to use the predicto
     biotools:primaryContact "TAPyR Support" .
 
 <https://bio.tools/tara> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
         edam:topic_0128,
@@ -464844,8 +494132,63 @@ Network alignment (NA) aims to find a node mapping between compared networks tha
     sc:name "TARA" ;
     sc:url "http://www.nd.edu/~cone/TARA/" .
 
+<https://bio.tools/taranis> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Nucleic acid sequence" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_0925" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence assembly" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2082" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Matrix" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1234" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence set (nucleic acid)" ] ;
+    bsc:output [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2084" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Nucleic acid report" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2855" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Distance matrix" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_3914" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Quality control report" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2082" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Matrix" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_3301,
+        edam:topic_3339 ;
+    sc:author <https://orcid.org/0000-0002-0740-6324>,
+        "Esperanza López",
+        "Luis Chapado" ;
+    sc:description "cg/wgMLST allele calling software, schema evaluation and allele distance estimation for outbreak reserch." ;
+    sc:featureList edam:operation_0289,
+        edam:operation_0495,
+        edam:operation_2478,
+        edam:operation_3209,
+        edam:operation_3840 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "Taranis" ;
+    sc:operatingSystem "Linux" ;
+    sc:softwareHelp <https://github.com/BU-ISCIII/taranis/wiki> ;
+    sc:softwareVersion "2.0.1" ;
+    sc:url "https://github.com/BU-ISCIII/taranis" ;
+    biotools:primaryContact <https://orcid.org/0000-0002-0740-6324> .
+
 <https://bio.tools/tarbase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0219,
@@ -464874,7 +494217,7 @@ Network alignment (NA) aims to find a node mapping between compared networks tha
     biotools:primaryContact "Contact Form" .
 
 <https://bio.tools/tardb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_0749,
@@ -464895,7 +494238,7 @@ Network alignment (NA) aims to find a node mapping between compared networks tha
     biotools:primaryContact <https://orcid.org/0000-0001-6349-5598> .
 
 <https://bio.tools/tarean> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:citation <https://doi.org/10.1093/nar/gkx257>,
         "pmcid:PMC5499541",
         "pubmed:28402514" ;
@@ -464907,7 +494250,7 @@ Network alignment (NA) aims to find a node mapping between compared networks tha
     sc:url "http://repeatexplorer.org/?page_id=826" .
 
 <https://bio.tools/tarfisdock> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0154,
@@ -464923,7 +494266,7 @@ Network alignment (NA) aims to find a node mapping between compared networks tha
     sc:url "http://www.dddc.ac.cn/tarfisdock/" .
 
 <https://bio.tools/target2denovodrug> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0209,
         edam:topic_0769 ;
@@ -464936,7 +494279,7 @@ The on-going data-science and AI revolution offers researchers with fresh set of
     sc:url "https://github.com/bengeof/Target2DeNovoDrug" .
 
 <https://bio.tools/target_explorer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0203,
@@ -464958,7 +494301,7 @@ The on-going data-science and AI revolution offers researchers with fresh set of
     biotools:primaryContact "Alona Sosinsky" .
 
 <https://bio.tools/targetatpsite> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0128,
@@ -464976,7 +494319,7 @@ The on-going data-science and AI revolution offers researchers with fresh set of
         "Jun Hu" .
 
 <https://bio.tools/targetdbpplus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_2269,
@@ -464993,18 +494336,8 @@ A DNA-binding protein identification method via using sequence-driven features."
     sc:name "TargetDBP+" ;
     sc:url "http://csbio.njust.edu.cn/bioinf/targetdbpplus/" .
 
-<https://bio.tools/targeted_bisulfite_sequencing> a sc:SoftwareApplication ;
-    sc:description "CD Genomics provides high-quality data and integrated bioinformatics analyses services for targeted bisulfite sequencing including bisulfite conversion, primer/probe design and validation, hybridization/PCR amplification, library preparation, DNA sequencing and data analysis. CD Genomics uses both commercially designed capture arrays and custom-designed capture libraries to fully meet your research objectives. Please feel free to contact us for more information. We look forward to cooperating with you in the near future." ;
-    sc:name "Targeted Bisulfite Sequencing" ;
-    sc:url "https://www.cd-genomics.com/Targeted-Bisulfite-Sequencing.html" .
-
-<https://bio.tools/targeted_rna_sequencing> a sc:SoftwareApplication ;
-    sc:description "Targeted RNA-sequencing selects and sequences subset transcripts of interests, increasing the coverage of a focused set of RNA sequences. It is an accurate method that generates genomic and gene-expression information of specific genome regions. The specific RNA sequences analysis enables RNA-Seq with high sensitivity and cost-effective access to NGS. By either targeted capture enrichment or amplicon-based approaches, Targeted RNA-Seq measures dozens to thousands of targets simultaneously. Enrichment assays also is a tool to identify both known and novel gene fusion partners in many sample types." ;
-    sc:name "Targeted RNA Sequencing" ;
-    sc:url "https://www.cd-genomics.com/targeted-rna-sequencing.html" .
-
 <https://bio.tools/targetedretrieval> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/bts361>,
@@ -465021,8 +494354,37 @@ A DNA-binding protein identification method via using sequence-driven features."
     sc:url "http://research.ics.aalto.fi/mi/software/rex12/" ;
     biotools:primaryContact "Support" .
 
+<https://bio.tools/targetgenereg> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1033" ;
+            sc:name "Ensembl gene ID" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2299" ;
+            sc:name "Gene name" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0204,
+        edam:topic_0602,
+        edam:topic_0659,
+        edam:topic_0749,
+        edam:topic_2229 ;
+    sc:citation <https://doi.org/10.1093/narcan/zcac009>,
+        "pmcid:PMC8946727",
+        "pubmed:35350773" ;
+    sc:description "A comprehensive web-atlas for p53, p63, and cell cycle-dependent gene regulation." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_1781,
+        edam:operation_2437 ;
+    sc:isAccessibleForFree true ;
+    sc:name "TargetGeneReg" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareVersion "2.0" ;
+    sc:url "http://www.TargetGeneReg.org" .
+
 <https://bio.tools/targethub> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0097 ;
@@ -465038,7 +494400,7 @@ A DNA-binding protein identification method via using sequence-driven features."
     sc:url "http://app1.bioinformatics.mdanderson.org/tarhub/_design/basic/docs.html" .
 
 <https://bio.tools/targetidentifier> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3512 ;
     sc:citation "pubmed:15980559" ;
@@ -465054,7 +494416,7 @@ A DNA-binding protein identification method via using sequence-driven features."
     biotools:primaryContact "Dr. X. (Jack) Min" .
 
 <https://bio.tools/targetmine> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_3336 ;
@@ -465074,7 +494436,7 @@ A DNA-binding protein identification method via using sequence-driven features."
     sc:url "http://targetmine.mizuguchilab.org/" .
 
 <https://bio.tools/targetmm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0199,
         edam:topic_0209,
@@ -465091,16 +494453,38 @@ TargetMM: Missense mutation is one kind of Single Nucleotide Variations, which m
     sc:name "TargetMM" ;
     sc:url "https://github.com/sera616/TargetMM.git" .
 
+<https://bio.tools/targetnet> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0659,
+        edam:topic_3170,
+        edam:topic_3452,
+        edam:topic_3474,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAB733>,
+        "pubmed:34677573" ;
+    sc:description "Functional microRNA Target Prediction with Deep Neural Networks." ;
+    sc:featureList edam:operation_0463,
+        edam:operation_3359,
+        edam:operation_3927 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "TargetNet" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/mswzeus/TargetNet" .
+
 <https://bio.tools/targetp> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Protein features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application",
         "Web service" ;
@@ -465120,7 +494504,7 @@ TargetMM: Missense mutation is one kind of Single Nucleotide Variations, which m
     biotools:primaryContact <http://orcid.org/0000-0002-9412-9643> .
 
 <https://bio.tools/targetprofiler> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0099,
@@ -465136,7 +494520,7 @@ TargetMM: Missense mutation is one kind of Single Nucleotide Variations, which m
     sc:url "http://mirna.imbb.forth.gr/Targetprofiler.html" .
 
 <https://bio.tools/targetrna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0154,
@@ -465158,7 +494542,7 @@ TargetMM: Missense mutation is one kind of Single Nucleotide Variations, which m
     biotools:primaryContact "Contact Form" .
 
 <https://bio.tools/targets> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0128,
@@ -465175,7 +494559,7 @@ TargetMM: Missense mutation is one kind of Single Nucleotide Variations, which m
     biotools:primaryContact "Dong-Jun" .
 
 <https://bio.tools/targets-mirna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0659,
@@ -465191,7 +494575,7 @@ TargetMM: Missense mutation is one kind of Single Nucleotide Variations, which m
     sc:url "http://liubioinfolab.org/targetS/mirna.html" .
 
 <https://bio.tools/targetscore> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0659 ;
@@ -465209,7 +494593,7 @@ TargetMM: Missense mutation is one kind of Single Nucleotide Variations, which m
     biotools:primaryContact "Yue Li" .
 
 <https://bio.tools/targetsearch> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3172 ;
@@ -465229,7 +494613,7 @@ TargetMM: Missense mutation is one kind of Single Nucleotide Variations, which m
     biotools:primaryContact "Alvaro Cuadros-Inostroza" .
 
 <https://bio.tools/targetseqview> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654,
@@ -465245,7 +494629,7 @@ TargetMM: Missense mutation is one kind of Single Nucleotide Variations, which m
     sc:url "https://github.com/Eitan177/targetSeqView" .
 
 <https://bio.tools/targettranslator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0202,
         edam:topic_2640,
         edam:topic_3336,
@@ -465265,7 +494649,7 @@ You have reached the TargetTranslator, an interactive tool that enables the crea
     sc:url "http://targettranslator.org" .
 
 <https://bio.tools/targetvita> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1186/1471-2105-15-297> ;
@@ -465278,7 +494662,7 @@ You have reached the TargetTranslator, an interactive tool that enables the crea
     sc:url "http://www.csbio.sjtu.edu.cn:8080/TargetVita/" .
 
 <https://bio.tools/taro> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0081,
@@ -465294,7 +494678,7 @@ You have reached the TargetTranslator, an interactive tool that enables the crea
     sc:url "http://www.compbio.dundee.ac.uk/taro" .
 
 <https://bio.tools/tarpan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0622,
         edam:topic_2640,
@@ -465312,7 +494696,7 @@ You have reached the TargetTranslator, an interactive tool that enables the crea
     sc:url "https://github.com/tcashby/tarpan" .
 
 <https://bio.tools/tarpmir> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0099,
@@ -465327,22 +494711,22 @@ You have reached the TargetTranslator, an interactive tool that enables the crea
 
 <https://bio.tools/tarseqqc> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ],
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence record" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ],
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3620" ;
+            sc:name "Plot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_3620" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3168,
@@ -465363,7 +494747,7 @@ You have reached the TargetTranslator, an interactive tool that enables the crea
     biotools:primaryContact "Gabriela Merino" .
 
 <https://bio.tools/tarsvm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_3168,
@@ -465380,7 +494764,7 @@ You have reached the TargetTranslator, an interactive tool that enables the crea
     biotools:primaryContact "Sampson MG" .
 
 <https://bio.tools/tarv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0634,
@@ -465396,7 +494780,7 @@ You have reached the TargetTranslator, an interactive tool that enables the crea
     sc:url "http://c2s2.yale.edu/software/TARV/" .
 
 <https://bio.tools/tase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:citation "pubmed:2059814" ;
@@ -465410,7 +494794,7 @@ You have reached the TargetTranslator, an interactive tool that enables the crea
     biotools:primaryContact "Author" .
 
 <https://bio.tools/tasi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_2269,
@@ -465429,7 +494813,7 @@ You have reached the TargetTranslator, an interactive tool that enables the crea
     biotools:primaryContact "Contact Form (Lee A. D. Cooper)" .
 
 <https://bio.tools/tasr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3676 ;
     sc:citation "pubmed:21589938" ;
@@ -465442,14 +494826,13 @@ You have reached the TargetTranslator, an interactive tool that enables the crea
 
 <https://bio.tools/tassdb> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1026" ;
-            sc:name "Gene symbol" ;
-            sc:sameAs "http://edamontology.org/data_1026" ] ;
+            sc:additionalType "http://edamontology.org/data_1026" ;
+            sc:name "Gene symbol" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1276" ;
-            sc:name "Nucleic acid features" ;
-            sc:sameAs "http://edamontology.org/data_1276" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1276" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Nucleic acid features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0114,
         edam:topic_3511 ;
@@ -465467,7 +494850,7 @@ You have reached the TargetTranslator, an interactive tool that enables the crea
     biotools:primaryContact "Placeholder" .
 
 <https://bio.tools/tassel> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0102,
@@ -465485,7 +494868,7 @@ You have reached the TargetTranslator, an interactive tool that enables the crea
     sc:url "http://www.maizegenetics.net/tassel" .
 
 <https://bio.tools/tasselnetv2plus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0780,
         edam:topic_3382,
@@ -465502,7 +494885,7 @@ You have reached the TargetTranslator, an interactive tool that enables the crea
     sc:url "https://tinyurl.com/TasselNetV2plus" .
 
 <https://bio.tools/tasti> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3053,
         edam:topic_3293,
         edam:topic_3943 ;
@@ -465523,7 +494906,7 @@ This R package uses maximum likelihood methods to construct species trees from g
     sc:url "https://github.com/hillarykoch/TASTI" .
 
 <https://bio.tools/tasuke> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0092,
@@ -465545,7 +494928,7 @@ This R package uses maximum likelihood methods to construct species trees from g
     biotools:primaryContact "Takeshi Itoh" .
 
 <https://bio.tools/tatajuba> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0625,
@@ -465565,14 +494948,14 @@ This R package uses maximum likelihood methods to construct species trees from g
 
 <https://bio.tools/tatp> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2955" ;
-            sc:name "Sequence report" ;
-            sc:sameAs "http://edamontology.org/data_2955" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2955" ;
+            sc:encodingFormat "http://edamontology.org/format_2333" ;
+            sc:name "Sequence report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0160 ;
@@ -465593,7 +494976,7 @@ This R package uses maximum likelihood methods to construct species trees from g
     biotools:primaryContact <http://orcid.org/0000-0002-9412-9643> .
 
 <https://bio.tools/taufactor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -465613,7 +494996,7 @@ This R package uses maximum likelihood methods to construct species trees from g
     biotools:primaryContact "Samuel Cooper" .
 
 <https://bio.tools/tautomer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0593,
         edam:topic_3068,
         edam:topic_3071 ;
@@ -465633,7 +495016,7 @@ A spreadsheet (Tautomer_database_release_3a.xlsx file) with 5,977 structures ext
     sc:url "https://cactus.nci.nih.gov/download/tautomer/" .
 
 <https://bio.tools/tautomerizer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2258,
         edam:topic_3068 ;
@@ -465645,7 +495028,7 @@ Predict tautomers based on 80+ rules.""" ;
     sc:url "https://cactus.nci.nih.gov/tautomerizer" .
 
 <https://bio.tools/tav4sb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_2259,
@@ -465663,7 +495046,7 @@ Predict tautomers based on 80+ rules.""" ;
     sc:url "http://bioputer.mimuw.edu.pl/tav4sb/" .
 
 <https://bio.tools/taverna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0769,
@@ -465682,7 +495065,7 @@ Predict tautomers based on 80+ rules.""" ;
     sc:url "https://taverna.incubator.apache.org/" .
 
 <https://bio.tools/taverna4proteomics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0769,
@@ -465696,7 +495079,7 @@ Predict tautomers based on 80+ rules.""" ;
     sc:url "http://ms-utils.org/Taverna/" .
 
 <https://bio.tools/taverna_compbio> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0097,
@@ -465718,7 +495101,7 @@ Predict tautomers based on 80+ rules.""" ;
     biotools:primaryContact "taveRNA team" .
 
 <https://bio.tools/tax2tree> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0637,
         edam:topic_3293,
@@ -465735,7 +495118,7 @@ Predict tautomers based on 80+ rules.""" ;
     sc:url "https://knightlab.ucsd.edu/wordpress/?p=194" .
 
 <https://bio.tools/tax4fun> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_1775,
@@ -465751,7 +495134,7 @@ Predict tautomers based on 80+ rules.""" ;
     sc:url "http://tax4fun.gobics.de/" .
 
 <https://bio.tools/tax4fun2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0659,
@@ -465771,7 +495154,7 @@ Predict tautomers based on 80+ rules.""" ;
     biotools:primaryContact "Bernd Wemheuer" .
 
 <https://bio.tools/taxa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0637 ;
     sc:citation <https://doi.org/10.12688/f1000research.14013.1> ;
@@ -465791,7 +495174,7 @@ Predict tautomers based on 80+ rules.""" ;
     biotools:primaryContact "Zachary Foster" .
 
 <https://bio.tools/taxallnomy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0637,
         edam:topic_3174,
         edam:topic_3293,
@@ -465815,7 +495198,7 @@ Taxallnomy is an extension of NCBI Taxonomy in which all taxa comprising it are
     sc:url "http://bioinfo.icb.ufmg.br/taxallnomy" .
 
 <https://bio.tools/taxamat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0637,
         edam:topic_3050,
         edam:topic_3697 ;
@@ -465831,7 +495214,7 @@ Taxallnomy is an extension of NCBI Taxonomy in which all taxa comprising it are
     sc:url "http://www.taxamat.com" .
 
 <https://bio.tools/taxator-tk> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0637,
@@ -465848,7 +495231,7 @@ Taxallnomy is an extension of NCBI Taxonomy in which all taxa comprising it are
     biotools:primaryContact "Johannes Droege" .
 
 <https://bio.tools/taxfold> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0637,
@@ -465864,10 +495247,9 @@ Taxallnomy is an extension of NCBI Taxonomy in which all taxa comprising it are
 
 <https://bio.tools/taxget> a sc:SoftwareApplication ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2858" ;
-            sc:name "Ontology concept" ;
-            sc:sameAs "http://edamontology.org/data_2858" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2858" ;
+            sc:name "Ontology concept" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0637 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -465898,10 +495280,9 @@ Taxallnomy is an extension of NCBI Taxonomy in which all taxa comprising it are
 
 <https://bio.tools/taxgetdown> a sc:SoftwareApplication ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2858" ;
-            sc:name "Ontology concept" ;
-            sc:sameAs "http://edamontology.org/data_2858" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2858" ;
+            sc:name "Ontology concept" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0637 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -465932,10 +495313,9 @@ Taxallnomy is an extension of NCBI Taxonomy in which all taxa comprising it are
 
 <https://bio.tools/taxgetrank> a sc:SoftwareApplication ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2858" ;
-            sc:name "Ontology concept" ;
-            sc:sameAs "http://edamontology.org/data_2858" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2858" ;
+            sc:name "Ontology concept" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0637 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -465966,10 +495346,9 @@ Taxallnomy is an extension of NCBI Taxonomy in which all taxa comprising it are
 
 <https://bio.tools/taxgetspecies> a sc:SoftwareApplication ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2858" ;
-            sc:name "Ontology concept" ;
-            sc:sameAs "http://edamontology.org/data_2858" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2858" ;
+            sc:name "Ontology concept" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0637 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -466000,10 +495379,9 @@ Taxallnomy is an extension of NCBI Taxonomy in which all taxa comprising it are
 
 <https://bio.tools/taxgetup> a sc:SoftwareApplication ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2858" ;
-            sc:name "Ontology concept" ;
-            sc:sameAs "http://edamontology.org/data_2858" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2858" ;
+            sc:name "Ontology concept" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0637 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -466033,7 +495411,7 @@ Taxallnomy is an extension of NCBI Taxonomy in which all taxa comprising it are
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/taxgetup.html" .
 
 <https://bio.tools/taxi-bacteria> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3314,
@@ -466049,28 +495427,12 @@ Taxallnomy is an extension of NCBI Taxonomy in which all taxa comprising it are
     sc:url "https://www.mathworks.com/matlabcentral/fileexchange/9732-taxi-movement-of-bacteria-to-the-food" ;
     biotools:primaryContact "Shmuel Ben-Ezra" .
 
-<https://bio.tools/taxi_drivers> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0749,
-        edam:topic_3318,
-        edam:topic_3335 ;
-    sc:citation <https://doi.org/10.1017/CTS.2018.260>,
-        "pmcid:PMC6798948" ;
-    sc:description """2460 Qualitative study of obesity risk perception, knowledge, and behavior among Hispanic taxi drivers in New York.
-
-OBJECTIVES SPECIFIC AIMS: To access obesity risk perceptions, knowledge and behaviors of Hispanic taxi cab drivers and develop a better understanding of the factors that influence health outcomes in this population. METHODS STUDY POPULATION: Focus groups were conducted at NYC H+H Lincoln, where subjects were screened and recruited from taxi bases with the help of the local Federation of Taxi Drivers. This was done by utilizing flyers, messages through taxi-base radios, and referrals from livery cab drivers. Approval from the local Institutional Review Board was obtained. The research investigators, developed a structured focus group procedural protocol of open-ended interview questions related to cardiovascular disease.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'taxi cab drivers NYC', 'taxi cab drivers', 'NYC Latino taxi cab drivers', 'drivers'""" ;
-    sc:name "taxi drivers" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6798948/" .
-
 <https://bio.tools/taxibgc> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3172,
@@ -466089,7 +495451,7 @@ OBJECTIVES SPECIFIC AIMS: To access obesity risk perceptions, knowledge and beha
     sc:url "https://doi.org/10.1101/2021.07.30.454505" .
 
 <https://bio.tools/taxize> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0637 ;
@@ -466113,7 +495475,7 @@ OBJECTIVES SPECIFIC AIMS: To access obesity risk perceptions, knowledge and beha
     biotools:primaryContact <http://orcid.org/0000-0003-1444-9135> .
 
 <https://bio.tools/taxman> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0602,
@@ -466135,7 +495497,7 @@ OBJECTIVES SPECIFIC AIMS: To access obesity risk perceptions, knowledge and beha
     biotools:primaryContact "Webmaster" .
 
 <https://bio.tools/taxmapper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0637,
@@ -466153,8 +495515,30 @@ OBJECTIVES SPECIFIC AIMS: To access obesity risk perceptions, knowledge and beha
     sc:url "https://bitbucket.org/dbeisser/taxmapper" ;
     biotools:primaryContact "Daniela Beisser" .
 
+<https://bio.tools/taxonbridge> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_3028" ;
+            sc:name "Taxonomy" ] ;
+    bsc:output [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_3028" ;
+            sc:name "Taxonomy" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0637 ;
+    sc:citation <https://doi.org/10.1101/2022.05.02.490269> ;
+    sc:description "R package to merge the NCBI taxonomy and the GBIF backbone taxonomy" ;
+    sc:featureList edam:operation_2422 ;
+    sc:isAccessibleForFree true ;
+    sc:license "CC0-1.0" ;
+    sc:name "Taxonbridge" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://CRAN.R-project.org/package=taxonbridge> ;
+    sc:url "https://CRAN.R-project.org/package=taxonbridge" .
+
 <https://bio.tools/taxonkit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_0637,
@@ -466172,7 +495556,7 @@ OBJECTIVES SPECIFIC AIMS: To access obesity risk perceptions, knowledge and beha
         "Hong Ren" .
 
 <https://bio.tools/taxonn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0634,
         edam:topic_3474,
@@ -466190,7 +495574,7 @@ An ensemble learning based method for training Convolutional Neural Networks on
     sc:url "https://github.com/divya031090/TaxoNN_OTU" .
 
 <https://bio.tools/taxonomic-annotation-blast-reports> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0622,
@@ -466207,14 +495591,14 @@ An ensemble learning based method for training Convolutional Neural Networks on
 
 <https://bio.tools/taxonomic_metagenome_tool> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3497" ;
-            sc:name "DNA sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_3497" ] ;
+            sc:additionalType "http://edamontology.org/data_3497" ;
+            sc:encodingFormat "http://edamontology.org/format_1932" ;
+            sc:name "DNA sequence (raw)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3028" ;
-            sc:name "Taxonomy" ;
-            sc:sameAs "http://edamontology.org/data_3028" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3028" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Taxonomy" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3174 ;
     sc:citation <https://doi.org/10.1093/nar/gkw343> ;
@@ -466231,18 +495615,18 @@ An ensemble learning based method for training Convolutional Neural Networks on
 
 <https://bio.tools/taxonomy_krona_chart> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0637,
         edam:topic_3299 ;
@@ -466262,14 +495646,14 @@ An ensemble learning based method for training Convolutional Neural Networks on
 
 <https://bio.tools/taxonomy_summary> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0637,
         edam:topic_3168 ;
@@ -466286,7 +495670,7 @@ An ensemble learning based method for training Convolutional Neural Networks on
     biotools:primaryContact "Galaxy Support Team" .
 
 <https://bio.tools/taxontable> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0637,
         edam:topic_0654,
         edam:topic_3050 ;
@@ -466304,7 +495688,7 @@ TaxonTableTools (TTT) aims to provide easy-to-use tools for biologists and non-b
     sc:url "https://github.com/TillMacher/TaxonTableTools" .
 
 <https://bio.tools/taxontree> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0091,
         edam:topic_0637,
@@ -466325,18 +495709,18 @@ The output is a NEX format tree file configured to be opened in FigTree, that us
 
 <https://bio.tools/taxoptimizer> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0637,
@@ -466354,8 +495738,28 @@ The output is a NEX format tree file configured to be opened in FigTree, that us
     sc:url "https://github.com/C3BI-pasteur-fr/taxo_pack" ;
     biotools:primaryContact "Galaxy Support Team" .
 
+<https://bio.tools/tb-profiler> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:encodingFormat "http://edamontology.org/format_2182" ;
+            sc:name "DNA sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:citation <https://doi.org/10.1186/s13073-015-0164-0>,
+        "pmcid:PMC6591855",
+        "pubmed:31234910" ;
+    sc:description "A tool for drug resistance prediction from _M. tuberculosis_ genomic data (sequencing reads, alignments or variants)." ;
+    sc:featureList edam:operation_3482 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "tb-profiler" ;
+    sc:operatingSystem "Linux" ;
+    sc:softwareVersion "4.1.1-1",
+        "4.2.0" ;
+    sc:url "https://github.com/jodyphelan/TBProfiler" .
+
 <https://bio.tools/tbbpred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0602,
@@ -466374,12 +495778,12 @@ The output is a NEX format tree file configured to be opened in FigTree, that us
         "Mac",
         "Windows" ;
     sc:softwareHelp <http://crdd.osdd.net/raghava/tbbpred/> ;
-    sc:url "http://www.imtech.res.in/raghava/tbbpred/" ;
+    sc:url "http://webs.iiitd.edu.in/raghava/tbbpred/" ;
     biotools:primaryContact "Dr G.P.S.Raghava",
         "Ms. Navjyot Kaur" .
 
 <https://bio.tools/tbcaps> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3304,
         edam:topic_3384,
@@ -466396,7 +495800,7 @@ Functional magnetic resonance imaging provides rich spatio-temporal data of huma
     sc:url "https://miplab.epfl.ch/index.php/software/tbcaps" .
 
 <https://bio.tools/tbdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0659,
         edam:topic_0749,
@@ -466417,7 +495821,7 @@ This database contains T-box riboswitch fold prediction, tRNA pairs from host or
     sc:url "https://tbdb.io" .
 
 <https://bio.tools/tbg-tools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0769,
@@ -466432,8 +495836,30 @@ This database contains T-box riboswitch fold prediction, tRNA pairs from host or
     sc:url "https://github.com/Croxa/tbg-tools" ;
     biotools:primaryContact <https://orcid.org/0000-0002-1547-7245> .
 
+<https://bio.tools/tbgr> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_0196,
+        edam:topic_0203,
+        edam:topic_0632,
+        edam:topic_0780 ;
+    sc:citation <https://doi.org/10.1093/PLPHYS/KIAC266>,
+        "pubmed:35670735" ;
+    sc:description "A comprehensive genome platform for Brassicaceae plants." ;
+    sc:featureList edam:operation_0308,
+        edam:operation_0525,
+        edam:operation_0544,
+        edam:operation_0553 ;
+    sc:isAccessibleForFree true ;
+    sc:name "TBGR" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://www.tbgr.org.cn" .
+
 <https://bio.tools/tbi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0099 ;
@@ -466447,8 +495873,47 @@ This database contains T-box riboswitch fold prediction, tRNA pairs from host or
     sc:softwareHelp <http://rna.physics.missouri.edu/MCTBI/userguide.html> ;
     sc:url "http://rna.physics.missouri.edu/MCTBI/" .
 
+<https://bio.tools/tbl2asn> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Nucleic acid sequence" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1270" ;
+            sc:encodingFormat "http://edamontology.org/format_2333" ;
+            sc:name "Feature table" ] ;
+    bsc:output [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2887" ;
+            sc:encodingFormat "http://edamontology.org/format_2333" ;
+            sc:name "Nucleic acid sequence record" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Workflow" ;
+    sc:applicationSubCategory edam:topic_0219 ;
+    sc:description "Tbl2asn is a command-line program that automates the creation of sequence records for submission to GenBank. It uses many of the same functions as Genome Workbench but is driven generally by data files. Tbl2asn generates .sqn files for submission to GenBank." ;
+    sc:featureList edam:operation_3431 ;
+    sc:isAccessibleForFree true ;
+    sc:name "tbl2asn" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://ftp.ncbi.nih.gov/toolbox/ncbi_tools/converters/by_program/tbl2asn/DOCUMENTATION/> ;
+    sc:url "https://www.ncbi.nlm.nih.gov/genbank/tbl2asn2/" .
+
+<https://bio.tools/tbl2gff3> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3068 ;
+    sc:description "Convert a table into GFF3. This is not a very complex or advanced tool, it won't produce GFF with hierarchy, just flat gff3 which may be sufficient for visualisation purposes." ;
+    sc:featureList edam:operation_3434 ;
+    sc:isAccessibleForFree true ;
+    sc:name "tbl2gff3" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://usegalaxy.org.au/root?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fiuc%2Ftbl2gff3%2Ftbl2gff3%2F1.2" .
+
 <https://bio.tools/tbl2knowngene> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3053,
@@ -466462,8 +495927,33 @@ This database contains T-box riboswitch fold prediction, tRNA pairs from host or
     sc:softwareHelp <http://isu.indstate.edu/ybai2/Tbl2KnownGene/index.html> ;
     sc:url "http://isu.indstate.edu/ybai2/Tbl2KnownGene/index.html" .
 
+<https://bio.tools/tblda> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_0203,
+        edam:topic_0602,
+        edam:topic_0625,
+        edam:topic_2885 ;
+    sc:citation <https://doi.org/10.26508/LSA.202101297>,
+        "pmcid:PMC9387650",
+        "pubmed:35977827" ;
+    sc:description "Telescoping bimodal latent Dirichlet allocation to identify expression QTLs across tissues." ;
+    sc:featureList edam:operation_0282,
+        edam:operation_2436,
+        edam:operation_3192,
+        edam:operation_3196,
+        edam:operation_3799 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "TBLDA" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/gewirtz/TBLDA" .
+
 <https://bio.tools/tbm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0140,
         edam:topic_2275 ;
@@ -466482,8 +495972,22 @@ ClusPro should only be used for noncommercial purposes.""" ;
     sc:name "TBM" ;
     sc:url "https://tbm.cluspro.org" .
 
+<https://bio.tools/tbpred> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:citation <https://doi.org/10.1186/1471-2105-8-337> ;
+    sc:description "TBpred is a prediction server that predicts four subcellular localization (cytoplasmic, integral membrane, secretory and membrane attached by lipid anchor) of mycobacterial proteins" ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "tbpred" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/tbpred/> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/tbpred/" .
+
 <https://bio.tools/tbtools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0623,
         edam:topic_3168 ;
@@ -466496,7 +496000,7 @@ ClusPro should only be used for noncommercial purposes.""" ;
     sc:url "https://github.com/CJ-Chen/TBtools/releases" .
 
 <https://bio.tools/tca> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3304,
         edam:topic_3308,
@@ -466512,7 +496016,7 @@ ClusPro should only be used for noncommercial purposes.""" ;
     sc:url "https://github.com/Soulnature/TCA" .
 
 <https://bio.tools/tcc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -466534,14 +496038,13 @@ ClusPro should only be used for noncommercial purposes.""" ;
 
 <https://bio.tools/tcdb> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2756" ;
-            sc:name "TCID" ;
-            sc:sameAs "http://edamontology.org/data_2756" ] ;
+            sc:additionalType "http://edamontology.org/data_2756" ;
+            sc:name "TCID" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Protein features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0623,
         edam:topic_0820 ;
@@ -466559,7 +496062,7 @@ ClusPro should only be used for noncommercial purposes.""" ;
     biotools:primaryContact "Prof. Milton H. Saier, Jr" .
 
 <https://bio.tools/tcga-assembler> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0622,
@@ -466575,7 +496078,7 @@ ClusPro should only be used for noncommercial purposes.""" ;
     sc:url "http://www.compgenome.org/TCGA-Assembler/" .
 
 <https://bio.tools/tcga-assembler_2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0196,
@@ -466595,7 +496098,7 @@ ClusPro should only be used for noncommercial purposes.""" ;
         "Yuan Ji" .
 
 <https://bio.tools/tcga2stat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0654,
@@ -466611,7 +496114,7 @@ ClusPro should only be used for noncommercial purposes.""" ;
     sc:url "http://www.liuzlab.org/TCGA2STAT/" .
 
 <https://bio.tools/tcga_api> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API" ;
     sc:applicationSubCategory edam:topic_2640 ;
     sc:citation <https://doi.org/10.5114/wo.2014.47136> ;
@@ -466626,7 +496129,7 @@ ClusPro should only be used for noncommercial purposes.""" ;
     sc:url "https://wiki.nci.nih.gov/display/TCGA/TCGA+DCC+Web+Service+User's+Guide" .
 
 <https://bio.tools/tcgabiolinks> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -466649,7 +496152,7 @@ ClusPro should only be used for noncommercial purposes.""" ;
         "Tiago Chedraoui Silva" .
 
 <https://bio.tools/tcgabiolinksgui> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0204,
@@ -466677,7 +496180,7 @@ ClusPro should only be used for noncommercial purposes.""" ;
     biotools:primaryContact "Tiago C. Silva" .
 
 <https://bio.tools/tcgautils> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3307 ;
     sc:description "A suite of helper functions for checking and manipulating TCGA data including data obtained from the curatedTCGAData experiment package. These functions aim to simplify and make working with TCGA data more manageable." ;
@@ -466694,10 +496197,10 @@ ClusPro should only be used for noncommercial purposes.""" ;
 
 <https://bio.tools/tcm-blast> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3786" ;
-            sc:name "Query script" ;
-            sc:sameAs "http://edamontology.org/data_3786" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3786" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Query script" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
@@ -466722,7 +496225,7 @@ ClusPro should only be used for noncommercial purposes.""" ;
     sc:url "http://viroblast.pungentdb.org.cn/TCM-Blast/viroblast.php" .
 
 <https://bio.tools/tcmio> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0154,
         edam:topic_0602,
@@ -466740,24 +496243,42 @@ Traditional Chinese medicine (TCM) has been widely used in China and show effect
     sc:name "TCMIO" ;
     sc:url "http://tcmio.xielab.net" .
 
+<https://bio.tools/tcmpg> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_0780,
+        edam:topic_3303,
+        edam:topic_3373,
+        edam:topic_3500 ;
+    sc:citation <https://doi.org/10.1093/HR/UHAC060>,
+        "pmcid:PMC9113410",
+        "pubmed:35591924" ;
+    sc:description "An integrative database for traditional Chinese medicine plant genomes." ;
+    sc:featureList edam:operation_2421,
+        edam:operation_3208,
+        edam:operation_3431 ;
+    sc:isAccessibleForFree true ;
+    sc:name "TCMPG" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://cbcb.cdutcm.edu.cn/TCMPG/" .
+
 <https://bio.tools/tcode> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0914" ;
-            sc:name "Codon usage data" ;
-            sc:sameAs "http://edamontology.org/data_0914" ],
+            sc:additionalType "http://edamontology.org/data_2887" ;
+            sc:name "Nucleic acid sequence record" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2887" ;
-            sc:name "Nucleic acid sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2887" ] ;
+            sc:additionalType "http://edamontology.org/data_0914" ;
+            sc:name "Codon usage data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1276" ;
-            sc:name "Nucleic acid features" ;
-            sc:sameAs "http://edamontology.org/data_1276" ],
+            sc:additionalType "http://edamontology.org/data_1276" ;
+            sc:name "Nucleic acid features" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2160" ;
-            sc:name "Fickett testcode plot" ;
-            sc:sameAs "http://edamontology.org/data_2160" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2160" ;
+            sc:name "Fickett testcode plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0623 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -466787,7 +496308,7 @@ Traditional Chinese medicine (TCM) has been widely used in China and show effect
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/tcode.html" .
 
 <https://bio.tools/tcof-db> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0128,
@@ -466810,16 +496331,37 @@ Traditional Chinese medicine (TCM) has been widely used in China and show effect
         "Ulf Schaefer",
         "Vladimir B. Bajic" .
 
+<https://bio.tools/tcofbase> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0621,
+        edam:topic_0749,
+        edam:topic_3169,
+        edam:topic_3295,
+        edam:topic_3674 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAB950>,
+        "pmcid:PMC8728270",
+        "pubmed:34718747" ;
+    sc:description "A comprehensive database for decoding the regulatory transcription co-factors in human and mouse." ;
+    sc:featureList edam:operation_1781,
+        edam:operation_2436,
+        edam:operation_2437 ;
+    sc:isAccessibleForFree true ;
+    sc:name "TcoFBase" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://tcof.liclab.net/TcoFbase" .
+
 <https://bio.tools/tcoffee> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:name "Sequence alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1006/jmbi.2000.4042> ;
@@ -466841,7 +496383,7 @@ Traditional Chinese medicine (TCM) has been widely used in China and show effect
     biotools:primaryContact "Cedric Notredame" .
 
 <https://bio.tools/tcr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2830,
@@ -466861,7 +496403,7 @@ Traditional Chinese medicine (TCM) has been widely used in China and show effect
     biotools:primaryContact <http://orcid.org/0000-0003-3659-2709> .
 
 <https://bio.tools/tcr-com> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0632,
         edam:topic_2275,
@@ -466885,7 +496427,7 @@ tcr_mhci_pos selection [,mhc_a=None [,tcr_a = None [,tcr_b = None [,mhc_a_init=1
     sc:url "https://tcr3d.ibbr.umd.edu/tcr_com" .
 
 <https://bio.tools/tcr_epItope_bimodal_attention_networks> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2830,
@@ -466907,7 +496449,7 @@ tcr_mhci_pos selection [,mhc_a=None [,tcr_a = None [,tcr_b = None [,mhc_a_init=1
     sc:url "https://github.com/PaccMann/TITAN" .
 
 <https://bio.tools/tcrbuilder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0154,
         edam:topic_0605,
@@ -466922,7 +496464,7 @@ tcr_mhci_pos selection [,mhc_a=None [,tcr_a = None [,tcr_b = None [,mhc_a_init=1
     sc:url "http://opig.stats.ox.ac.uk/webapps/stcrpred/TCRBuilder/" .
 
 <https://bio.tools/tcrd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
         edam:topic_0625,
@@ -466942,7 +496484,7 @@ TCRD is the central resource behind the Illuminating the Druggable Genome Knowle
     sc:url "http://juniper.health.unm.edu/tcrd/" .
 
 <https://bio.tools/tcrdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0804,
         edam:topic_2229,
         edam:topic_3170 ;
@@ -466958,7 +496500,7 @@ TCRdb contains more than 277 million highly reliable TCR sequences from over 826
     sc:url "http://bioinfo.life.hust.edu.cn/TCRdb/" .
 
 <https://bio.tools/tcrgp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2269,
@@ -466979,7 +496521,7 @@ TCRdb contains more than 277 million highly reliable TCR sequences from over 826
         "Harri Lähdesmäki" .
 
 <https://bio.tools/tcrmatch> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_2830,
         edam:topic_3324,
@@ -466995,7 +496537,7 @@ TCRdb contains more than 277 million highly reliable TCR sequences from over 826
     sc:url "http://tools.iedb.org/tcrmatch/" .
 
 <https://bio.tools/tcrmodel> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2275,
         edam:topic_2830 ;
@@ -467008,7 +496550,7 @@ TCRdb contains more than 277 million highly reliable TCR sequences from over 826
     biotools:primaryContact "Ragul Gowthaman" .
 
 <https://bio.tools/tcrpair> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0154,
@@ -467027,7 +496569,7 @@ TCRdb contains more than 277 million highly reliable TCR sequences from over 826
     sc:url "https://www.github.com/amoesch/TCRpair" .
 
 <https://bio.tools/tcs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0654,
@@ -467044,7 +496586,7 @@ TCRdb contains more than 277 million highly reliable TCR sequences from over 826
     sc:url "http://darwin.uvigo.es/software/tcs.html" .
 
 <https://bio.tools/tcs-msa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_3168,
@@ -467060,7 +496602,7 @@ TCRdb contains more than 277 million highly reliable TCR sequences from over 826
     sc:url "http://tcoffee.crg.cat/apps/tcoffee/do:core" .
 
 <https://bio.tools/tcsbu> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3053,
@@ -467076,7 +496618,7 @@ TCRdb contains more than 277 million highly reliable TCR sequences from over 826
     sc:url "http://cibio.up.pt/software/tcsBU/" .
 
 <https://bio.tools/tcseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3168,
         edam:topic_3169,
@@ -467097,7 +496639,7 @@ TCRdb contains more than 277 million highly reliable TCR sequences from over 826
     biotools:primaryContact "Mengjun Wu" .
 
 <https://bio.tools/tdaracne> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0602 ;
@@ -467115,7 +496657,7 @@ TCRdb contains more than 277 million highly reliable TCR sequences from over 826
     biotools:primaryContact "Zoppoli Pietro" .
 
 <https://bio.tools/tdaview> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0769,
         edam:topic_3382 ;
@@ -467131,8 +496673,29 @@ a TDA analysis and visualization tool, by importing the data and metadata, and c
     sc:name "TDAview" ;
     sc:url "https://voineagulab.github.io/TDAview/" .
 
+<https://bio.tools/tdbrain> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_3304,
+        edam:topic_3334,
+        edam:topic_3360,
+        edam:topic_3419,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1038/S41597-022-01409-Z>,
+        "pmcid:PMC9198070",
+        "pubmed:35701407" ;
+    sc:description "The two decades brainclinics research archive for insights in neurophysiology (TDBRAIN) database." ;
+    sc:featureList edam:operation_2428 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "TDBRAIN" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/BCD-gitprojects/TDBRAIN/" .
+
 <https://bio.tools/tdmc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_3063,
         edam:topic_3342 ;
@@ -467141,7 +496704,7 @@ a TDA analysis and visualization tool, by importing the data and metadata, and c
     sc:url "https://datacatalog.elixir-luxembourg.org/" .
 
 <https://bio.tools/tdr_targets> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0209,
@@ -467162,7 +496725,7 @@ a TDA analysis and visualization tool, by importing the data and metadata, and c
     biotools:primaryContact "TDR-Target Group" .
 
 <https://bio.tools/tdt_power_calculator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0634,
@@ -467177,12 +496740,79 @@ a TDA analysis and visualization tool, by importing the data and metadata, and c
     sc:softwareHelp <http://people.virginia.edu/~wc9c/TDTPC/Download.htm> ;
     sc:url "http://people.virginia.edu/~wc9c/TDTPC/Download.htm" .
 
+<https://bio.tools/tdthub> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2299" ;
+            sc:name "Gene name" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0091,
+        edam:topic_0204,
+        edam:topic_0602,
+        edam:topic_0749,
+        edam:topic_0780 ;
+    sc:citation <https://doi.org/10.1111/TPJ.15873>,
+        "pubmed:35713985" ;
+    sc:description "Web server tool for the analysis of transcription factor binding sites in plants." ;
+    sc:featureList edam:operation_0372,
+        edam:operation_0445 ;
+    sc:isAccessibleForFree true ;
+    sc:name "TDTHub" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://acrab.cnb.csic.es/TDTHub/" .
+
+<https://bio.tools/te-hi-gcn> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0634,
+        edam:topic_3304,
+        edam:topic_3384,
+        edam:topic_3419,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1007/S12021-021-09548-1>,
+        "pubmed:34761367" ;
+    sc:description "An Ensemble of Transfer Hierarchical Graph Convolutional Networks for Disorder Diagnosis." ;
+    sc:featureList edam:operation_3435,
+        edam:operation_3927,
+        edam:operation_3937 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "TE-HI-GCN" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/llt1836/TE-HI-GCN" .
+
+<https://bio.tools/te_density> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0625,
+        edam:topic_0769,
+        edam:topic_0798,
+        edam:topic_3295,
+        edam:topic_3299 ;
+    sc:citation <https://doi.org/10.1186/S13100-022-00264-4>,
+        "pmcid:PMC9004194",
+        "pubmed:35413944" ;
+    sc:description "Calculate TE density for every gene in a genome, along sliding windows, upstream, intragenically, and downstream of genes, and correctly allocate TE density values to a gene along TE Order and Superfamily identities. Our main goal in writing this tool was to provide a clear and concise pipeline/metric to aid in the study of TE presence relative to genes." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_0335,
+        edam:operation_3196 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "TE Density" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/sjteresi/TE_Density" .
+
 <https://bio.tools/teaas> a sc:SoftwareApplication ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0857" ;
-            sc:name "Sequence search results" ;
-            sc:sameAs "http://edamontology.org/data_0857" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0857" ;
+            sc:name "Sequence search results" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0749,
@@ -467209,7 +496839,7 @@ a TDA analysis and visualization tool, by importing the data and metadata, and c
     sc:url "http://www.teaas.cn/index.php" .
 
 <https://bio.tools/teacheng> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0091,
@@ -467222,7 +496852,7 @@ a TDA analysis and visualization tool, by importing the data and metadata, and c
     biotools:primaryContact "Support" .
 
 <https://bio.tools/teacon> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0780,
         edam:topic_3170,
@@ -467241,7 +496871,7 @@ Tea plant (Camellia sinensis) is one of the world’s most important beverage cr
     sc:url "http://teacon.wchoda.com" .
 
 <https://bio.tools/teak> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -467256,7 +496886,7 @@ Tea plant (Camellia sinensis) is one of the world’s most important beverage cr
     sc:url "https://code.google.com/p/teak/" .
 
 <https://bio.tools/tealeaves> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0780,
         edam:topic_3300,
         edam:topic_3315,
@@ -467281,7 +496911,7 @@ Implements models of leaf temperature using energy balance""" ;
     sc:url "https://github.com/cdmuir/tealeaves-ms" .
 
 <https://bio.tools/team> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0199,
@@ -467303,7 +496933,7 @@ Implements models of leaf temperature using energy balance""" ;
     biotools:primaryContact "Joaquín Dopazo" .
 
 <https://bio.tools/teamid> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0632,
         edam:topic_2229,
         edam:topic_2885,
@@ -467322,7 +496952,7 @@ Tea is a highly cross-pollinated, woody, perennial tree. High heterozygosity com
     sc:url "http://indianteagenome.in:8080/teamid/" .
 
 <https://bio.tools/teamtat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0219,
         edam:topic_3068,
         edam:topic_3303,
@@ -467340,8 +496970,29 @@ Tea is a highly cross-pollinated, woody, perennial tree. High heterozygosity com
     sc:name "TeamTat" ;
     sc:url "https://www.teamtat.org" .
 
+<https://bio.tools/teaprot> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0080,
+        edam:topic_0121,
+        edam:topic_0601,
+        edam:topic_0602,
+        edam:topic_0625 ;
+    sc:citation <https://doi.org/10.1021/ACS.JPROTEOME.2C00048>,
+        "pubmed:35759515" ;
+    sc:description "Upstream and Downstream Proteomics Analysis." ;
+    sc:featureList edam:operation_0417,
+        edam:operation_2436,
+        edam:operation_3645 ;
+    sc:isAccessibleForFree true ;
+    sc:name "TeaProt" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://tea.coffeeprot.com/" .
+
 <https://bio.tools/tebacten> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0218 ;
     sc:author "Andrés Cañada" ;
@@ -467359,7 +497010,7 @@ Tea is a highly cross-pollinated, woody, perennial tree. High heterozygosity com
         "Martin Krallinger" .
 
 <https://bio.tools/tedna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0196,
@@ -467374,10 +497025,9 @@ Tea is a highly cross-pollinated, woody, perennial tree. High heterozygosity com
 
 <https://bio.tools/tedsim> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3495" ;
-            sc:name "RNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3495" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3495" ;
+            sc:name "RNA sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_2229,
@@ -467398,8 +497048,44 @@ Tea is a highly cross-pollinated, woody, perennial tree. High heterozygosity com
     sc:softwareHelp <https://github.com/Galaxeee/TedSim> ;
     sc:url "https://github.com/Galaxeee/TedSim" .
 
+<https://bio.tools/teeport> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_2269,
+        edam:topic_3299 ;
+    sc:citation <https://doi.org/10.3389/FDATA.2021.734650>,
+        "pmcid:PMC8636989",
+        "pubmed:34870190" ;
+    sc:description "Task-based Extensible Evolutionary algorithm Platform for Optimization and Real-time Testing." ;
+    sc:featureList edam:operation_0479 ;
+    sc:isAccessibleForFree true ;
+    sc:name "Teeport" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://teeport.ml/tasks" .
+
+<https://bio.tools/teff> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_3170,
+        edam:topic_3308,
+        edam:topic_3577 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC269>,
+        "pubmed:35426914" ;
+    sc:description "Estimation of Treatment EFFects on transcriptomic data using causal random forest." ;
+    sc:featureList edam:operation_3936 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "teff" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://teff-package.github.io/teff/teff.html> ;
+    sc:url "https://teff-package.github.io" .
+
 <https://bio.tools/tefinder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0769,
         edam:topic_0798,
@@ -467418,7 +497104,7 @@ TEfinder uses discordant reads to detect novel transposable element insertion ev
     sc:url "https://github.com/VistaSohrab/TEfinder" .
 
 <https://bio.tools/tega> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0621,
         edam:topic_0625,
@@ -467436,7 +497122,7 @@ TEfinder uses discordant reads to detect novel transposable element insertion ev
     sc:url "https://github.com/darioelias/TEGA" .
 
 <https://bio.tools/teiser> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0203,
@@ -467452,7 +497138,7 @@ TEfinder uses discordant reads to detect novel transposable element insertion ev
     sc:url "https://tavazoielab.c2b2.columbia.edu/TEISER/" .
 
 <https://bio.tools/tejaas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0625,
         edam:topic_0659,
@@ -467474,7 +497160,7 @@ Tejaas is based on the hypothesis that a trans-eQTL should regulate the expressi
     sc:url "https://github.com/soedinglab/tejaas" .
 
 <https://bio.tools/telegram> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_3263,
         edam:topic_3300 ;
@@ -467494,7 +497180,7 @@ Telegram Survey Bot is free software: you can redistribute it and/or modify it u
     sc:url "https://github.com/Raze97/Telegram-Survey-Bot" .
 
 <https://bio.tools/telemac-tools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2259 ;
     sc:description "Read/write functions for Telemac hydrodynamic model files (both Selafin and Leonard formats)" ;
@@ -467507,24 +497193,8 @@ Telegram Survey Bot is free software: you can redistribute it and/or modify it u
     sc:url "https://www.mathworks.com/matlabcentral/fileexchange/25021-telemac-tools" ;
     biotools:primaryContact "Thomas Benson" .
 
-<https://bio.tools/telemedicine> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3063,
-        edam:topic_3263,
-        edam:topic_3403 ;
-    sc:citation "pmcid:PMC6813662",
-        "pubmed:31642860" ;
-    sc:description """contributions, difficulties and key factors for implementation in the prison setting.
-
-Information and communication technologies are transforming the way we understand health, via a hyper-connected world in which patients, professionals and society take on new challenges and roles. This change is creating an ecosystem called connected health, in which telemedicine acquires special importance when distance (not only geographical), is a critical factor. It can respond to financial, social or safety needs or questions of dignity, as is the case with prisoners when they are transferred handcuffed and under custody to hospitals. Bringing health services closer to patients who cannot autonomously travel contributes towards humanising healthcare.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'prison'""" ;
-    sc:name "telemedicine" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31642860" .
-
 <https://bio.tools/telescoper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0196,
@@ -467538,7 +497208,7 @@ Information and communication technologies are transforming the way we understan
     sc:url "http://sourceforge.net/p/telescoper/wiki/Home/" .
 
 <https://bio.tools/tellaprialbi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3379,
         edam:topic_3412 ;
@@ -467552,8 +497222,52 @@ Information and communication technologies are transforming the way we understan
     sc:url "https://tellaprialbi.37binary.com" ;
     biotools:primaryContact <https://orcid.org/0000-0002-4666-5337> .
 
+<https://bio.tools/telocal> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_2182" ;
+            sc:name "Sequence" ] ;
+    bsc:output [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1916" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0798 ;
+    sc:description "TElocal is a tool that utilizes both uniquely and ambiguously mapped reads to quantify transposable element expression at the locus level. TElocal takes RNA-seq (and similar data) and annotates reads to both genes & transposable elements." ;
+    sc:featureList edam:operation_2495 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "TElocal" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://hammelllab.labsites.cshl.edu/software/#TElocal" .
+
+<https://bio.tools/telogator> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_0196,
+        edam:topic_0621,
+        edam:topic_3360 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC005>,
+        "pmcid:PMC8963315",
+        "pubmed:35022670" ;
+    sc:description "A method for reporting chromosome-specific telomere lengths from long reads." ;
+    sc:featureList edam:operation_0310,
+        edam:operation_3182,
+        edam:operation_3198 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "Telogator" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://github.com/zstephens/telogator" .
+
 <https://bio.tools/telometric> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3383,
@@ -467570,7 +497284,7 @@ Information and communication technologies are transforming the way we understan
     sc:url "http://bioinformatics.fccc.edu/software/OpenSource/telometric/telometric.shtml" .
 
 <https://bio.tools/telotool> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0632,
@@ -467587,8 +497301,32 @@ Information and communication technologies are transforming the way we understan
     sc:url "https://www.mathworks.com/matlabcentral/fileexchange/44573-telotool-terminal-restriction-fragment-analysis" ;
     biotools:primaryContact "Janett Göhring" .
 
+<https://bio.tools/telr> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0194,
+        edam:topic_0196,
+        edam:topic_0621,
+        edam:topic_2229,
+        edam:topic_3500 ;
+    sc:citation <https://doi.org/10.1101/2022.01.04.471818> ;
+    sc:description "Local assembly of long reads enables phylogenomics of transposable elements in a polyploid cell line." ;
+    sc:featureList edam:operation_0310,
+        edam:operation_3180,
+        edam:operation_3192,
+        edam:operation_3198,
+        edam:operation_3227 ;
+    sc:isAccessibleForFree true ;
+    sc:license "BSD-2-Clause" ;
+    sc:name "TELR" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://github.com/bergmanlab/TELR/blob/master/docs/01_Installation.md> ;
+    sc:url "https://github.com/bergmanlab/telr" .
+
 <https://bio.tools/temp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_2885,
@@ -467603,7 +497341,7 @@ Information and communication technologies are transforming the way we understan
     sc:url "https://github.com/JialiUMassWengLab/TEMP" .
 
 <https://bio.tools/temp2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0621,
@@ -467624,7 +497362,7 @@ TEMP2 is an algorithm for detecting transposon insertions using short-read whole
     sc:url "https://github.com/weng-lab/TEMP2" .
 
 <https://bio.tools/tempel> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_3299,
         edam:topic_3474 ;
@@ -467638,7 +497376,7 @@ TEMP2 is an algorithm for detecting transposon insertions using short-read whole
     sc:url "https://drive.google.com/drive/folders/15WULR5__6k47iRotRPl3H7ghi3RpeNXH" .
 
 <https://bio.tools/templateflow> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0089,
@@ -467656,7 +497394,7 @@ TEMP2 is an algorithm for detecting transposon insertions using short-read whole
     sc:url "http://www.templateflow.org" .
 
 <https://bio.tools/tempomage> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3169,
         edam:topic_3295,
@@ -467676,7 +497414,7 @@ TEMP2 is an algorithm for detecting transposon insertions using short-read whole
     sc:url "https://github.com/pkhoueiry/TempoMAGE" .
 
 <https://bio.tools/tempura> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0621,
         edam:topic_0637,
@@ -467691,7 +497429,7 @@ TEMP2 is an algorithm for detecting transposon insertions using short-read whole
     sc:url "http://togodb.org/db/tempura" .
 
 <https://bio.tools/tenet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2259,
@@ -467707,7 +497445,7 @@ TEMP2 is an algorithm for detecting transposon insertions using short-read whole
     sc:url "https://sites.google.com/site/cosbyntu/softwares/tenet" .
 
 <https://bio.tools/tenet-network> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0749,
         edam:topic_2229,
@@ -467725,7 +497463,7 @@ A tool for reconstructing Transfer Entropy-based causal gene NETwork from pseudo
     sc:url "https://github.com/neocaleb/TENET" .
 
 <https://bio.tools/tengexa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
         edam:topic_0659,
@@ -467747,7 +497485,7 @@ While working on transcripts such as CDS, alternative splicing, circular RNAs or
     sc:url "http://webtom.cabgrid.res.in/tissue_enrich/" .
 
 <https://bio.tools/tensor_classification> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3316 ;
     sc:citation <https://doi.org/10.1186/s12859-018-2188-0> ;
@@ -467760,7 +497498,7 @@ While working on transcripts such as CDS, alternative splicing, circular RNAs or
     biotools:primaryContact "Laura Frølich" .
 
 <https://bio.tools/tensorflow> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3360,
         edam:topic_3474 ;
@@ -467779,7 +497517,7 @@ TensorFlow is an end-to-end open source platform for machine learning. It has a
     sc:url "https://www.tensorflow.org" .
 
 <https://bio.tools/tensorpac> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_2269,
         edam:topic_3304 ;
@@ -467793,7 +497531,7 @@ TensorFlow is an end-to-end open source platform for machine learning. It has a
     sc:url "https://github.com/EtienneCmb/tensorpac" .
 
 <https://bio.tools/tenuipalpidae> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0637,
         edam:topic_0780,
         edam:topic_3071,
@@ -467808,7 +497546,7 @@ The Tenuipalpidae is one of the most important families of phytophagous mites. S
     sc:url "https://www.tenuipalpidae.ibilce.unesp.br/" .
 
 <https://bio.tools/tenxplore> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3308 ;
@@ -467826,7 +497564,7 @@ The Tenuipalpidae is one of the most important families of phytophagous mites. S
     biotools:primaryContact "VJ Carey" .
 
 <https://bio.tools/tenzing> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0637,
         edam:topic_3068,
@@ -467844,7 +497582,7 @@ Documenting Contributions to Scientific Scholarly Output with CRediT.""" ;
     sc:url "https://martonbalazskovacs.shinyapps.io/tenzing/" .
 
 <https://bio.tools/tepitool> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3510,
@@ -467860,7 +497598,7 @@ Documenting Contributions to Scientific Scholarly Output with CRediT.""" ;
     sc:url "http://tools.iedb.org/tepitool/" .
 
 <https://bio.tools/teqc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3053,
@@ -467879,7 +497617,7 @@ Documenting Contributions to Scientific Scholarly Output with CRediT.""" ;
     biotools:primaryContact "Manuela Hummel" .
 
 <https://bio.tools/tera> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3053,
         edam:topic_3293,
@@ -467893,7 +497631,7 @@ Documenting Contributions to Scientific Scholarly Output with CRediT.""" ;
     sc:url "http://mbb.univ-montp2.fr/MBB/download_sources/16__TERA" .
 
 <https://bio.tools/tera-seq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_3047,
@@ -467917,7 +497655,7 @@ Documenting Contributions to Scientific Scholarly Output with CRediT.""" ;
     sc:url "https://github.com/mourelatos-lab/TERA-Seq_manuscript" .
 
 <https://bio.tools/terastitcher> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3382 ;
     sc:citation <https://doi.org/10.1186/1471-2105-13-316> ;
@@ -467933,7 +497671,7 @@ Documenting Contributions to Scientific Scholarly Output with CRediT.""" ;
     sc:url "http://abria.github.io/TeraStitcher/" .
 
 <https://bio.tools/terl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0160,
         edam:topic_0621,
@@ -467949,7 +497687,7 @@ Documenting Contributions to Scientific Scholarly Output with CRediT.""" ;
     sc:url "https://github.com/muriloHoracio/TERL" .
 
 <https://bio.tools/termine> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_3473 ;
     sc:citation <https://doi.org/10.1007/s007999900023> ;
@@ -467964,7 +497702,7 @@ Documenting Contributions to Scientific Scholarly Output with CRediT.""" ;
     sc:url "http://www.nactem.ac.uk/software/termine" .
 
 <https://bio.tools/terminformer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0218,
         edam:topic_3303,
@@ -467981,8 +497719,29 @@ Terminology is the most basic information that researchers and literature analys
     sc:name "TermInformer" ;
     sc:url "https://github.com/prayagtiwari/TermInformer" .
 
+<https://bio.tools/terminodiff> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Desktop application" ;
+    sc:applicationSubCategory edam:topic_0089,
+        edam:topic_3063,
+        edam:topic_3068,
+        edam:topic_3315 ;
+    sc:citation <https://doi.org/10.3233/SHTI220475>,
+        "pubmed:35612097" ;
+    sc:description "Detecting Semantic Differences in HL7 FHIR CodeSystems." ;
+    sc:featureList edam:operation_0224,
+        edam:operation_0337,
+        edam:operation_3096 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "TerminoDiff" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/itcr-uni-luebeck/TerminoDiff" .
+
 <https://bio.tools/terminus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API",
         "Web application" ;
     sc:applicationSubCategory edam:topic_3510 ;
@@ -467994,18 +497753,18 @@ Terminology is the most basic information that researchers and literature analys
 
 <https://bio.tools/ternarynet> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3108" ;
-            sc:name "Experimental measurement" ;
-            sc:sameAs "http://edamontology.org/data_3108" ],
+            sc:additionalType "http://edamontology.org/data_3112" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Gene expression matrix" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3112" ;
-            sc:name "Gene expression matrix" ;
-            sc:sameAs "http://edamontology.org/data_3112" ] ;
+            sc:additionalType "http://edamontology.org/data_3108" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Experimental measurement" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0951" ;
-            sc:name "Statistical estimate score" ;
-            sc:sameAs "http://edamontology.org/data_0951" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0951" ;
+            sc:encodingFormat "http://edamontology.org/format_3033" ;
+            sc:name "Statistical estimate score" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -468027,7 +497786,7 @@ Terminology is the most basic information that researchers and literature analys
     biotools:primaryContact "Matthew N. McCall" .
 
 <https://bio.tools/terokit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0821,
         edam:topic_3047,
@@ -468046,7 +497805,7 @@ Terpenome defines as all terpenoid-like and terpenoid-derived compounds, includi
     sc:url "http://terokit.qmclab.com/" .
 
 <https://bio.tools/terrestrialmetagenomedb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3053,
         edam:topic_3174,
         edam:topic_3697,
@@ -468064,7 +497823,7 @@ Microbiome studies focused on the genetic potential of microbial communities (me
     sc:url "https://webapp.ufz.de/tmdb" .
 
 <https://bio.tools/tesla> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2259,
@@ -468081,13 +497840,36 @@ Microbiome studies focused on the genetic potential of microbial communities (me
     sc:url "http://www.sailing.cs.cmu.edu/main/?page_id=444" .
 
 <https://bio.tools/teslatoto> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "TESLATOTO Merupakan Bandar Togel Online terpercaya dengan diskon mencapai 66% menyediakan beragam jenis permainan hanya menggunakan 1 userid" ;
     sc:name "TeslaToto" ;
     sc:url "https://139.59.99.87/" .
 
+<https://bio.tools/tespex> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0602,
+        edam:topic_0769,
+        edam:topic_3170,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC526>,
+        "pubmed:35876845" ;
+    sc:description "Consensus-specific quantification of transposable element expression preventing biases from exonized fragments." ;
+    sc:featureList edam:operation_3192,
+        edam:operation_3198,
+        edam:operation_3223,
+        edam:operation_3799 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "TEspeX" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/fansalon/TEspeX/tree/fansalon/TEspeX" .
+
 <https://bio.tools/tess> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3293,
@@ -468104,7 +497886,7 @@ Microbiome studies focused on the genetic potential of microbial communities (me
     sc:url "http://cran.r-project.org/web/packages/TESS/" .
 
 <https://bio.tools/tessa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:citation <https://doi.org/10.1016/J.JVOICE.2020.07.039>,
         "pubmed:32873432" ;
     sc:description "A Novel MATLAB Program for Automated Tessitura Analysis." ;
@@ -468116,7 +497898,7 @@ Microbiome studies focused on the genetic potential of microbial communities (me
     sc:url "https://github.com/Allerseelen/Tessa" .
 
 <https://bio.tools/testdose> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0593,
         edam:topic_3384,
@@ -468136,7 +497918,7 @@ Microbiome studies focused on the genetic potential of microbial communities (me
         "M. Bardies" .
 
 <https://bio.tools/teststorm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3382,
         edam:topic_3385,
@@ -468154,7 +497936,7 @@ Microbiome studies focused on the genetic potential of microbial communities (me
     biotools:primaryContact "Miklos Erdelyi" .
 
 <https://bio.tools/tetramito> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -468171,8 +497953,30 @@ Microbiome studies focused on the genetic potential of microbial communities (me
     biotools:primaryContact "Hao Lin",
         "Lin Ding Group" .
 
+<https://bio.tools/tex> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0203,
+        edam:topic_0602,
+        edam:topic_3173,
+        edam:topic_3400 ;
+    sc:citation <https://doi.org/10.1186/S13073-022-01079-X>,
+        "pmcid:PMC9264601",
+        "pubmed:35799269" ;
+    sc:description "Identification of a cytokine-dominated immunosuppressive class in squamous cell lung carcinoma with implications for immunotherapy resistance." ;
+    sc:featureList edam:operation_2436,
+        edam:operation_3223,
+        edam:operation_3463 ;
+    sc:isAccessibleForFree true ;
+    sc:name "tex" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://liwzlab.cn/tex" .
+
 <https://bio.tools/texmed> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3068 ;
     sc:description "Query PubMed and store references in BibTeX format." ;
@@ -468186,7 +497990,7 @@ Microbiome studies focused on the genetic potential of microbial communities (me
     sc:url "http://www.bioinformatics.org/texmed/" .
 
 <https://bio.tools/text> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0218,
@@ -468203,16 +498007,58 @@ Microbiome studies focused on the genetic potential of microbial communities (me
     sc:softwareHelp <http://www.r-text.org/> ;
     sc:url "https://cloud.r-project.org/package=text" .
 
+<https://bio.tools/text2brain> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_3068,
+        edam:topic_3384,
+        edam:topic_3444,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1016/J.MEDIA.2022.102540>,
+        "pubmed:35914394" ;
+    sc:description "A transformer-Based neural language model that synthesizes brain activation maps from free-form text queries." ;
+    sc:featureList edam:operation_0224,
+        edam:operation_3908,
+        edam:operation_3927 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "Text2Brain" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://braininterpreter.com" .
+
+<https://bio.tools/textformats> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0091,
+        edam:topic_0622,
+        edam:topic_3372 ;
+    sc:citation <https://doi.org/10.1371/JOURNAL.PONE.0268910>,
+        "pmcid:PMC9135226",
+        "pubmed:35617194" ;
+    sc:description "Simplifying the definition and parsing of text formats in bioinformatics." ;
+    sc:featureList edam:operation_0335,
+        edam:operation_1812,
+        edam:operation_3096 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "TextFormats" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://github.com/ggonnella/textformats/tree/main/manuals> ;
+    sc:url "https://github.com/ggonnella/textformats" .
+
 <https://bio.tools/textget> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0957" ;
-            sc:name "Database metadata" ;
-            sc:sameAs "http://edamontology.org/data_0957" ] ;
+            sc:additionalType "http://edamontology.org/data_0957" ;
+            sc:name "Database metadata" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0957" ;
-            sc:name "Database metadata" ;
-            sc:sameAs "http://edamontology.org/data_0957" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0957" ;
+            sc:name "Database metadata" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -468243,14 +498089,12 @@ Microbiome studies focused on the genetic potential of microbial communities (me
 
 <https://bio.tools/textsearch> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3756" ;
-            sc:name "Localisation score" ;
-            sc:sameAs "http://edamontology.org/data_3756" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3756" ;
+            sc:name "Localisation score" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -468279,17 +498123,51 @@ Microbiome studies focused on the genetic potential of microbial communities (me
     sc:softwareVersion "r6" ;
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/textsearch.html" .
 
-<https://bio.tools/textttbrea> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_2269,
-        edam:topic_3379 ;
-    sc:citation <https://doi.org/10.1093/BIOSTATISTICS/KXZ029>,
-        "pubmed:31373358" ;
-    sc:description "> VERY_LOW CONFIDENCE! | > HOMEPAGE MISSING! | A general semiparametric Bayesian discrete-time recurrent events model | Event time variables are often recorded in a discrete fashion, especially in the case of patient-reported outcomes. This work is motivated by a study of illicit drug users, in which time to drug use cessation has been recorded as a number of whole months. Existing approaches for handling such discrete data include treating the survival times as continuous (with adjustments for inevitable tied outcomes), or using discrete models that omit important features like random effects. We provide a general Bayesian discrete-time proportional hazards model, incorporating a number of features popular in continuous-time models such as competing risks and frailties. Our model also provides flexible baseline hazards for time effects, as well as generalized additive models style semiparametric incorporation of other time-varying covariates" ;
-    sc:name "textttbrea" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31373358" .
+<https://bio.tools/tf-marker> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0634,
+        edam:topic_0749,
+        edam:topic_2229,
+        edam:topic_2640,
+        edam:topic_3068 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAB1114>,
+        "pmcid:PMC8728118",
+        "pubmed:34986601" ;
+    sc:description "A comprehensive manually curated database for transcription factors and related markers in specific cell and tissue types in human." ;
+    sc:featureList edam:operation_0224,
+        edam:operation_0415,
+        edam:operation_3778 ;
+    sc:isAccessibleForFree true ;
+    sc:name "TF-Marker" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://bio.liclab.net/TF-Marker/" .
+
+<https://bio.tools/tf-pca> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_3384,
+        edam:topic_3474,
+        edam:topic_3520 ;
+    sc:citation <https://doi.org/10.1016/J.DCN.2022.101114>,
+        "pmcid:PMC9156873",
+        "pubmed:35636345" ;
+    sc:description "A practical introduction to EEG Time-Frequency Principal Components Analysis (TF-PCA)." ;
+    sc:featureList edam:operation_2939,
+        edam:operation_3891,
+        edam:operation_3960 ;
+    sc:isAccessibleForFree true ;
+    sc:license "AGPL-3.0" ;
+    sc:name "TF-PCA" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/NDCLab/tfpca-tutorial" .
 
 <https://bio.tools/tf2network> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0204,
         edam:topic_0749,
@@ -468312,7 +498190,7 @@ Paste input genes below or upload a gene set file to get started. Clicking the d
     sc:url "http://bioinformatics.psb.ugent.be/webtools/TF2Network/" .
 
 <https://bio.tools/tf3p> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0202,
         edam:topic_3047,
@@ -468327,7 +498205,7 @@ Paste input genes below or upload a gene set file to get started. Clicking the d
     sc:url "https://github.com/canisw/tf3p" .
 
 <https://bio.tools/tfam> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0659 ;
@@ -468342,7 +498220,7 @@ Paste input genes below or upload a gene set file to get started. Clicking the d
     sc:url "http://tfam.lcb.uu.se/" .
 
 <https://bio.tools/tfanalysis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3169,
         edam:topic_3474 ;
@@ -468356,7 +498234,7 @@ Paste input genes below or upload a gene set file to get started. Clicking the d
     sc:url "https://github.com/SchulzLab/TFAnalysis" .
 
 <https://bio.tools/tfarm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2269 ;
@@ -468375,7 +498253,7 @@ Paste input genes below or upload a gene set file to get started. Clicking the d
     biotools:primaryContact "Liuba Nausicaa Martino" .
 
 <https://bio.tools/tfbind> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0654,
@@ -468391,7 +498269,7 @@ Paste input genes below or upload a gene set file to get started. Clicking the d
     sc:url "http://tfbind.hgc.jp/" .
 
 <https://bio.tools/tfbs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0654,
@@ -468407,7 +498285,7 @@ Paste input genes below or upload a gene set file to get started. Clicking the d
     sc:url "http://tfbs.genereg.net/" .
 
 <https://bio.tools/tfbscluster> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0749,
@@ -468429,7 +498307,7 @@ Paste input genes below or upload a gene set file to get started. Clicking the d
     biotools:primaryContact "TFBScluster Support" .
 
 <https://bio.tools/tfbsfinder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0203,
@@ -468446,14 +498324,14 @@ Paste input genes below or upload a gene set file to get started. Clicking the d
 
 <https://bio.tools/tfbstools> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2887" ;
-            sc:name "Nucleic acid sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2887" ] ;
+            sc:additionalType "http://edamontology.org/data_2887" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Nucleic acid sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0749 ;
@@ -468475,7 +498353,7 @@ Paste input genes below or upload a gene set file to get started. Clicking the d
     biotools:primaryContact <http://orcid.org/0000-0003-0026-8739> .
 
 <https://bio.tools/tfcancer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0219,
         edam:topic_0602,
@@ -468495,7 +498373,7 @@ Paste input genes below or upload a gene set file to get started. Clicking the d
     biotools:primaryContact <https://orcid.org/0000-0003-2680-785X> .
 
 <https://bio.tools/tfcheckpoint> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_2815,
@@ -468514,10 +498392,9 @@ Paste input genes below or upload a gene set file to get started. Clicking the d
 
 <https://bio.tools/tfextract> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0896" ;
-            sc:name "Protein report" ;
-            sc:sameAs "http://edamontology.org/data_0896" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0896" ;
+            sc:name "Protein report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0749 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -468547,7 +498424,7 @@ Paste input genes below or upload a gene set file to get started. Clicking the d
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/tfextract.html" .
 
 <https://bio.tools/tfgd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0203,
@@ -468568,7 +498445,7 @@ Paste input genes below or upload a gene set file to get started. Clicking the d
     biotools:primaryContact "Contact form" .
 
 <https://bio.tools/tfhaz> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3169 ;
@@ -468585,7 +498462,7 @@ Paste input genes below or upload a gene set file to get started. Clicking the d
     biotools:primaryContact "Alberto Marchesi" .
 
 <https://bio.tools/tfinfer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0203 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btq469> ;
@@ -468598,7 +498475,7 @@ Paste input genes below or upload a gene set file to get started. Clicking the d
     sc:url "http://homepages.inf.ed.ac.uk/s0976841/TFInfer/" .
 
 <https://bio.tools/tflda> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0203,
         edam:topic_3169,
@@ -468611,10 +498488,9 @@ Paste input genes below or upload a gene set file to get started. Clicking the d
 
 <https://bio.tools/tfm> a sc:SoftwareApplication ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0958" ;
-            sc:name "Tool metadata" ;
-            sc:sameAs "http://edamontology.org/data_0958" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0958" ;
+            sc:name "Tool metadata" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -468644,7 +498520,7 @@ Paste input genes below or upload a gene set file to get started. Clicking the d
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/tfm.html" .
 
 <https://bio.tools/tfm-explorer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0749,
@@ -468663,7 +498539,7 @@ Paste input genes below or upload a gene set file to get started. Clicking the d
     biotools:primaryContact "TFM-explorer team" .
 
 <https://bio.tools/tfmlab> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3068,
         edam:topic_3318,
@@ -468681,7 +498557,7 @@ PIV(Particle Image Velocimetry), Traction force microscopy, Template matching (O
     sc:url "https://sites.google.com/site/qingzongtseng/tfm" .
 
 <https://bio.tools/tfmodeller> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btm148> ;
@@ -468696,7 +498572,7 @@ PIV(Particle Image Velocimetry), Traction force microscopy, Template matching (O
     sc:url "http://maya.ccg.unam.mx/~tfmodell/tutorial.html" .
 
 <https://bio.tools/tfmotifview> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0204,
         edam:topic_0621,
@@ -468715,7 +498591,7 @@ TFmotifView is a web server that allows to study the distribution of known trans
     sc:url "http://bardet.u-strasbg.fr/tfmotifview/" .
 
 <https://bio.tools/tfold> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0099,
@@ -468731,7 +498607,7 @@ TFmotifView is a web server that allows to study the distribution of known trans
     sc:url "https://evryrna.ibisc.univ-evry.fr/evryrna/tfold" .
 
 <https://bio.tools/tfpred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3292,
         edam:topic_3295,
@@ -468753,7 +498629,7 @@ TFPred is a webserver for the identification of transcription factors and transc
     sc:url "http://lin-group.cn/server/TFPred/" .
 
 <https://bio.tools/tfpredict> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0203,
@@ -468773,18 +498649,15 @@ TFPred is a webserver for the identification of transcription factors and transc
 
 <https://bio.tools/tfscan> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2887" ;
-            sc:name "Nucleic acid sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2887" ],
+            sc:additionalType "http://edamontology.org/data_0896" ;
+            sc:name "Protein report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0896" ;
-            sc:name "Protein report" ;
-            sc:sameAs "http://edamontology.org/data_0896" ] ;
+            sc:additionalType "http://edamontology.org/data_2887" ;
+            sc:name "Nucleic acid sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0916" ;
-            sc:name "Gene report" ;
-            sc:sameAs "http://edamontology.org/data_0916" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0916" ;
+            sc:name "Gene report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3512 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -468813,8 +498686,26 @@ TFPred is a webserver for the identification of transcription factors and transc
     sc:softwareVersion "r6" ;
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/tfscan.html" .
 
+<https://bio.tools/tfta> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_2640,
+        edam:topic_3053,
+        edam:topic_3307 ;
+    sc:citation <https://doi.org/10.1038/srep39709>,
+        "pmcid:PMC5175166",
+        "pubmed:28000771" ;
+    sc:description "Transcription Factor Target Enrichment Analysis" ;
+    sc:name "TFTA" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://github.com/babelomics/tftea/wiki> ;
+    sc:url "https://github.com/babelomics/TFTEA" ;
+    biotools:primaryContact <https://orcid.org/0000-0003-3318-120X> .
+
 <https://bio.tools/tftenricher> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0204,
@@ -468837,7 +498728,7 @@ TFPred is a webserver for the identification of transcription factors and transc
     sc:url "https://github.com/rasma774/Tftenricher" .
 
 <https://bio.tools/tfutils> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3308 ;
     sc:description "Package to work with TF data." ;
@@ -468853,7 +498744,7 @@ TFPred is a webserver for the identification of transcription factors and transc
     biotools:primaryContact "Shweta Gopaulakrishnan" .
 
 <https://bio.tools/tg-lasso> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0208,
         edam:topic_2640,
@@ -468874,8 +498765,31 @@ Cancer is one of the leading causes of death globally and is expected to be the
     sc:name "TG-LASSO" ;
     sc:url "https://github.com/emad2/TG-LASSO" .
 
+<https://bio.tools/tgcna> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0602,
+        edam:topic_3170,
+        edam:topic_3308,
+        edam:topic_3315,
+        edam:topic_3318 ;
+    sc:citation <https://doi.org/10.1080/02664763.2019.1667311>,
+        "pmcid:PMC9041782",
+        "pubmed:35706920" ;
+    sc:description "Temporal gene coexpression network analysis using a low-rank plus sparse framework." ;
+    sc:featureList edam:operation_2426,
+        edam:operation_3463,
+        edam:operation_3766 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "TGCnA" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/QiZhangStat/TGCnA" .
+
 <https://bio.tools/tgex> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0625,
         edam:topic_0769,
@@ -468905,7 +498819,7 @@ Cancer is one of the leading causes of death globally and is expected to be the
     sc:url "http://tgex.genecards.org/" .
 
 <https://bio.tools/tgge-star> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0199,
@@ -468927,14 +498841,14 @@ Cancer is one of the leading causes of death globally and is expected to be the
 
 <https://bio.tools/tgnet> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_2200" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:encodingFormat "http://edamontology.org/format_3477" ;
+            sc:name "Pathway or network" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0196 ;
@@ -468952,7 +498866,7 @@ Cancer is one of the leading causes of death globally and is expected to be the
     biotools:primaryContact "Yannick Wurm" .
 
 <https://bio.tools/tgs-tb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0625,
@@ -468968,7 +498882,7 @@ Cancer is one of the leading causes of death globally and is expected to be the
     sc:url "https://gph.niid.go.jp/tgs-tb/" .
 
 <https://bio.tools/tgsa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3474,
@@ -468987,7 +498901,7 @@ Cancer is one of the leading causes of death globally and is expected to be the
     sc:url "https://github.com/violet-sto/TGSA" .
 
 <https://bio.tools/tgstools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_3170,
@@ -469009,7 +498923,7 @@ Third generation sequencing can de novo detect long reads of several thousand ba
     sc:url "https://github.com/BioinformaticsSTU/TGStools" .
 
 <https://bio.tools/tgx-ddi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0654,
@@ -469032,7 +498946,7 @@ Third generation sequencing can de novo detect long reads of several thousand ba
     biotools:primaryContact <https://orcid.org/0000-0001-5979-5141> .
 
 <https://bio.tools/thd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3056,
         edam:topic_3293,
@@ -469056,7 +498970,7 @@ The primary application of THD is the quantitative analysis and identification o
     sc:url "https://github.com/rasigadelab/thd" .
 
 <https://bio.tools/the_autophagy_database> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -469076,7 +498990,7 @@ The primary application of THD is the quantitative analysis and identification o
     biotools:primaryContact "Hideaki Sugawara" .
 
 <https://bio.tools/the_chickpea_portal> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_3070 ;
     sc:citation <https://doi.org/10.7946/P2G596>,
@@ -469093,7 +499007,7 @@ The primary application of THD is the quantitative analysis and identification o
     biotools:primaryContact "Australia" .
 
 <https://bio.tools/the_coronavirus_app> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -469109,10 +499023,10 @@ The primary application of THD is the quantitative analysis and identification o
 
 <https://bio.tools/the_flux_capacitor> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_2306" ;
+            sc:name "Sequence alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0077 ;
     sc:author "Micha Sammeth" ;
@@ -469133,14 +499047,13 @@ The primary application of THD is the quantitative analysis and identification o
 
 <https://bio.tools/the_flux_simulator> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:encodingFormat "http://edamontology.org/format_2306" ;
+            sc:name "Sequence features" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:author "Micha Sammeth" ;
@@ -469160,7 +499073,7 @@ The primary application of THD is the quantitative analysis and identification o
     biotools:primaryContact "Micha Sammeth" .
 
 <https://bio.tools/the_genetic_map_comparator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0797,
@@ -469179,14 +499092,14 @@ The primary application of THD is the quantitative analysis and identification o
 
 <https://bio.tools/the_genomic_hyperbrowser> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3108" ;
-            sc:name "Experimental measurement" ;
-            sc:sameAs "http://edamontology.org/data_3108" ],
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_3005" ;
+            sc:name "Annotation track" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3108" ;
+            sc:encodingFormat "http://edamontology.org/format_3005" ;
+            sc:name "Experimental measurement" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0622,
@@ -469224,7 +499137,7 @@ The primary application of THD is the quantitative analysis and identification o
     sc:url "https://hyperbrowser.uio.no" .
 
 <https://bio.tools/the_grid> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0602,
@@ -469244,8 +499157,47 @@ The primary application of THD is the quantitative analysis and identification o
     sc:url "http://www.thebiogrid.org/" ;
     biotools:primaryContact "BioGRID Support" .
 
+<https://bio.tools/the_image_data_explorer> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Data" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Image" ] ;
+    bsc:output [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Desktop application",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_2229,
+        edam:topic_3383,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1371/journal.pone.0273698> ;
+    sc:description "The Image Data Explorer (IDE) is a web application that integrates interactive linked visualization of images and derived data points with exploratory data analysis methods, annotation, classification and feature selection functionalities. A cloud deployment is accessible at https://shiny-portal.embl.de/shinyapps/app/01_image-data-explorer." ;
+    sc:featureList edam:operation_0226,
+        edam:operation_2939,
+        edam:operation_2940,
+        edam:operation_2943,
+        edam:operation_2945,
+        edam:operation_3432,
+        edam:operation_3552,
+        edam:operation_3935 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "The Image Data Explorer" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://git.embl.de/heriche/image-data-explorer/-/wikis/home> ;
+    sc:softwareVersion "v1.3.2" ;
+    sc:url "https://git.embl.de/heriche/image-data-explorer" .
+
 <https://bio.tools/the_interactorium> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_3070 ;
     sc:citation <https://doi.org/10.1371/journal.pbio.0050153> ;
@@ -469262,7 +499214,7 @@ The primary application of THD is the quantitative analysis and identification o
     biotools:primaryContact "Australia" .
 
 <https://bio.tools/the_ithanet_portal> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -469298,7 +499250,7 @@ The primary application of THD is the quantitative analysis and identification o
     sc:url "http://www.ithanet.eu" .
 
 <https://bio.tools/the_mendel_site> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -469319,7 +499271,7 @@ The primary application of THD is the quantitative analysis and identification o
     biotools:primaryContact "IMP Bioinformatics Group" .
 
 <https://bio.tools/the_o-glcnac_database> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Library" ;
     sc:applicationSubCategory edam:topic_0154,
@@ -469346,7 +499298,7 @@ The primary application of THD is the quantitative analysis and identification o
     sc:url "http://www.oglcnac.mcw.edu" .
 
 <https://bio.tools/thecellvision> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0140,
         edam:topic_0621,
         edam:topic_0625,
@@ -469371,7 +499323,7 @@ Cell cycle-specific analysis of protein localization and abundance, with gene ex
     sc:url "http://TheCellVision.org" .
 
 <https://bio.tools/theme> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0203,
@@ -469387,7 +499339,7 @@ Cell cycle-specific analysis of protein localization and abundance, with gene ex
     sc:url "http://metadb.bmes.nthu.edu.tw/theme/home.php" .
 
 <https://bio.tools/themetagenomics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0637,
         edam:topic_0659,
@@ -469406,7 +499358,7 @@ themetagenomics provides functions to explore topics generated from 16S rRNA seq
     sc:url "https://cran.r-project.org/package=themetagenomics" .
 
 <https://bio.tools/theorchromo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_2814,
@@ -469423,14 +499375,14 @@ themetagenomics provides functions to explore topics generated from 16S rRNA seq
 
 <https://bio.tools/theospec> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Mass spectrometry spectra" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -469444,16 +499396,50 @@ themetagenomics provides functions to explore topics generated from 16S rRNA seq
     sc:softwareHelp <https://sourceforge.net/p/protms/wiki/Home/> ;
     sc:url "https://sourceforge.net/projects/protms/files/theospec/" .
 
+<https://bio.tools/thepred> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:description "A webserver for the prediction of T-helper cell Epitopes." ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "thepred" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/thepred/index.html> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/thepred/index.html" .
+
+<https://bio.tools/therapeutic_target_database> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_3336,
+        edam:topic_3373,
+        edam:topic_3375,
+        edam:topic_3379 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAB953>,
+        "pmcid:PMC8728281",
+        "pubmed:34718717" ;
+    sc:description "Facilitating drug discovery with enriched comparative data of targeted agents." ;
+    sc:featureList edam:operation_2421,
+        edam:operation_3938 ;
+    sc:isAccessibleForFree true ;
+    sc:name "Therapeutic target database" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://idrblab.org/ttd/" .
+
 <https://bio.tools/thermo_msf_parser> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ] ;
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:name "Mass spectrometry data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2886" ;
-            sc:name "Protein sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2886" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2886" ;
+            sc:encodingFormat "http://edamontology.org/format_3702" ;
+            sc:name "Protein sequence record" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121 ;
     sc:citation <https://doi.org/10.1021/pr2005154> ;
@@ -469469,7 +499455,7 @@ themetagenomics provides functions to explore topics generated from 16S rRNA seq
     sc:url "https://github.com/compomics/thermo-msf-parser" .
 
 <https://bio.tools/thermoalign> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0632,
@@ -469484,8 +499470,51 @@ themetagenomics provides functions to explore topics generated from 16S rRNA seq
     sc:url "https://github.com/drmaize/ThermoAlign" ;
     biotools:primaryContact "Randall J. Wisser" .
 
+<https://bio.tools/thermobase> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0084,
+        edam:topic_3068,
+        edam:topic_3297,
+        edam:topic_3300,
+        edam:topic_3407 ;
+    sc:citation <https://doi.org/10.1371/JOURNAL.PONE.0268253>,
+        "pmcid:PMC9089862",
+        "pubmed:35536846" ;
+    sc:description "A database of the phylogeny and physiology of thermophilic and hyperthermophilic organisms." ;
+    sc:featureList edam:operation_0335,
+        edam:operation_2421,
+        edam:operation_2422,
+        edam:operation_3802 ;
+    sc:isAccessibleForFree true ;
+    sc:name "ThermoBase" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://togodb.org/db/thermobase" .
+
+<https://bio.tools/thermometer> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0123,
+        edam:topic_0128,
+        edam:topic_0130 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAB868>,
+        "pmcid:PMC8963285",
+        "pubmed:35020787" ;
+    sc:description "A webserver to predict protein thermal stability." ;
+    sc:featureList edam:operation_0248,
+        edam:operation_0276 ;
+    sc:isAccessibleForFree true ;
+    sc:name "Thermometer" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://service.tartaglialab.com/new_submission/thermometer_file" .
+
 <https://bio.tools/thermomutdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0130,
         edam:topic_0154,
         edam:topic_0199,
@@ -469502,7 +499531,7 @@ themetagenomics provides functions to explore topics generated from 16S rRNA seq
     sc:url "http://biosig.unimelb.edu.au/thermomutdb" .
 
 <https://bio.tools/thermonet-protein> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0130,
         edam:topic_0199,
         edam:topic_0736,
@@ -469524,7 +499553,7 @@ ThermoNet is a computational framework for quantitative prediction of the change
     sc:url "https://github.com/gersteinlab/ThermoNet" .
 
 <https://bio.tools/thermopred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -469541,7 +499570,7 @@ ThermoNet is a computational framework for quantitative prediction of the change
     biotools:primaryContact "Hao Lin" .
 
 <https://bio.tools/thermoscan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0130,
@@ -469562,30 +499591,27 @@ ThermoNet is a computational framework for quantitative prediction of the change
 
 <https://bio.tools/theseed> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2737" ;
-            sc:name "FIG ID" ;
-            sc:sameAs "http://edamontology.org/data_2737" ],
+            sc:additionalType "http://edamontology.org/data_2737" ;
+            sc:name "FIG ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2737" ;
-            sc:name "FIG ID" ;
-            sc:sameAs "http://edamontology.org/data_2737" ],
+            sc:additionalType "http://edamontology.org/data_2737" ;
+            sc:name "FIG ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2737" ;
-            sc:name "FIG ID" ;
-            sc:sameAs "http://edamontology.org/data_2737" ] ;
+            sc:additionalType "http://edamontology.org/data_2737" ;
+            sc:name "FIG ID" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2711" ;
-            sc:name "Genome report" ;
-            sc:sameAs "http://edamontology.org/data_2711" ],
+            sc:additionalType "http://edamontology.org/data_2711" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Genome report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0916" ;
-            sc:name "Gene report" ;
-            sc:sameAs "http://edamontology.org/data_0916" ],
+            sc:additionalType "http://edamontology.org/data_0916" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Gene report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0916" ;
-            sc:name "Gene report" ;
-            sc:sameAs "http://edamontology.org/data_0916" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0916" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Gene report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0797 ;
     sc:citation <https://doi.org/10.1186/1471-2164-9-75>,
@@ -469601,7 +499627,7 @@ ThermoNet is a computational framework for quantitative prediction of the change
     sc:url "http://www.theseed.org/" .
 
 <https://bio.tools/theta> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0203,
         edam:topic_0602,
@@ -469617,8 +499643,35 @@ Estimating efficacy of gene-target-disease associations is a fundamental step in
     sc:name "ThETA" ;
     sc:url "https://github.com/vittoriofortino84/ThETA" .
 
+<https://bio.tools/thex> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0084,
+        edam:topic_0194,
+        edam:topic_0621,
+        edam:topic_0769,
+        edam:topic_3315 ;
+    sc:citation <https://doi.org/10.1101/2022.01.03.474706> ;
+    sc:description "Tree House Explorer (THEx) is a novel genome browser for exploring phylogenetic and genomic data in one succinct place." ;
+    sc:featureList edam:operation_0323,
+        edam:operation_0325,
+        edam:operation_0567,
+        edam:operation_3208,
+        edam:operation_3216 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "THEx" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/harris-2374/THEx" .
+
 <https://bio.tools/thicknesstool> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3316,
         edam:topic_3382 ;
@@ -469636,7 +499689,7 @@ To develop an automated retina layer thickness measurement tool for the ImageJ p
     sc:url "https://github.com/DanielMaidana/ThicknessTool" .
 
 <https://bio.tools/thingsvision> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3304,
@@ -469656,7 +499709,7 @@ To develop an automated retina layer thickness measurement tool for the ImageJ p
         "Martin N. Hebart" .
 
 <https://bio.tools/thinspace> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0637,
         edam:topic_3174,
@@ -469672,7 +499725,7 @@ To develop an automated retina layer thickness measurement tool for the ImageJ p
     sc:url "http://github.com/phiweger/thinspace" .
 
 <https://bio.tools/thoraxe> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3170,
         edam:topic_3303,
@@ -469687,8 +499740,24 @@ To develop an automated retina layer thickness measurement tool for the ImageJ p
     sc:name "ThorAxe" ;
     sc:url "http://www.lcqb.upmc.fr/ThorAxe" .
 
+<https://bio.tools/thpdb> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:citation <https://doi.org/10.1371/journal.pone.0181748>,
+        "pmcid:PMC5536290",
+        "pubmed:28759605" ;
+    sc:description "THPdb is a comprehensive database based on approved and approved/investigational therapeutic peptides compiling important information about these peptides, like their description, sequence, indication, mechanism of action, pharmacodynamics, toxicity, metabolism, absorption, half life, volume of distribution, clearance rate, patent information, interaction with other drugs, targets, physicochemical properties, etc." ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "thpdb" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/thpdb/> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/thpdb/" .
+
 <https://bio.tools/thread_mapper_studio> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0602,
@@ -469710,7 +499779,7 @@ To develop an automated retina layer thickness measurement tool for the ImageJ p
     biotools:primaryContact "THREaD Mapper support" .
 
 <https://bio.tools/threader> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0130,
@@ -469726,7 +499795,7 @@ To develop an automated retina layer thickness measurement tool for the ImageJ p
     sc:url "http://bioinf.cs.ucl.ac.uk/?id=747" .
 
 <https://bio.tools/threaderai> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_2814,
         edam:topic_3474 ;
@@ -469744,7 +499813,7 @@ We propose a new template-based modelling method called ThreaderAI to improve pr
     sc:url "https://github.com/ShenLab/ThreaderAI" .
 
 <https://bio.tools/threadna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0160,
@@ -469762,7 +499831,7 @@ We propose a new template-based modelling method called ThreaderAI to improve pr
     biotools:primaryContact "Sam Meyer" .
 
 <https://bio.tools/threadom> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0736,
@@ -469779,10 +499848,10 @@ We propose a new template-based modelling method called ThreaderAI to improve pr
 
 <https://bio.tools/threadom_ex> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2974" ;
-            sc:name "Protein sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_2974" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2974" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence (raw)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0196,
@@ -469800,7 +499869,7 @@ We propose a new template-based modelling method called ThreaderAI to improve pr
     sc:url "http://zhanglab.ccmb.med.umich.edu/ThreaDomEx" .
 
 <https://bio.tools/three_to_one> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121 ;
     sc:citation <https://doi.org/10.2144/00286ir01>,
@@ -469816,7 +499885,7 @@ We propose a new template-based modelling method called ThreaderAI to improve pr
     biotools:primaryContact "Paul Stothard" .
 
 <https://bio.tools/three_to_one_letter_code> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121 ;
     sc:description "This tool can convert 3-letter amino acid codes to 1-letter amino acid codes and inversely." ;
@@ -469830,7 +499899,7 @@ We propose a new template-based modelling method called ThreaderAI to improve pr
     biotools:primaryContact "Three to One support" .
 
 <https://bio.tools/thresholdlikelihood> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_3055 ;
@@ -469848,7 +499917,7 @@ We propose a new template-based modelling method called ThreaderAI to improve pr
     biotools:primaryContact "David Bryant" .
 
 <https://bio.tools/thresholdnet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_2640,
         edam:topic_3382 ;
@@ -469862,8 +499931,30 @@ The automatic segmentation of polyp in endoscopy images is crucial for early dia
     sc:name "ThresholdNet" ;
     sc:url "https://github.com/Guo-Xiaoqing/ThresholdNet" .
 
+<https://bio.tools/throne> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_3495" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "RNA sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0091,
+        edam:topic_0108,
+        edam:topic_3474,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.1016/J.JMB.2022.167549>,
+        "pubmed:35662472" ;
+    sc:description "A New Approach for Accurate Prediction of Human RNA N7-Methylguanosine Sites." ;
+    sc:featureList edam:operation_2409 ;
+    sc:isAccessibleForFree true ;
+    sc:name "THRONE" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://thegleelab.org/THRONE/" .
+
 <https://bio.tools/thrsdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0219,
         edam:topic_0780 ;
@@ -469880,7 +499971,7 @@ The automatic segmentation of polyp in endoscopy images is crucial for early dia
     sc:url "http://thairicestarch.kku.ac.th" .
 
 <https://bio.tools/thrutracker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_0621,
@@ -469895,7 +499986,7 @@ The automatic segmentation of polyp in endoscopy images is crucial for early dia
     biotools:primaryContact <https://orcid.org/0000-0003-1457-3689> .
 
 <https://bio.tools/thunder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2229,
         edam:topic_3295 ;
@@ -469910,7 +500001,7 @@ THUNDER is a deconvolution method specifically tailored to address unique challe
     sc:url "https://github.com/brycerowland/thundeR.git" .
 
 <https://bio.tools/thunderstorm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_3382,
         edam:topic_3383,
@@ -469927,7 +500018,7 @@ THUNDER is a deconvolution method specifically tailored to address unique challe
     sc:url "http://zitmen.github.io/thunderstorm/" .
 
 <https://bio.tools/thunor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
@@ -469949,7 +500040,7 @@ THUNDER is a deconvolution method specifically tailored to address unique challe
     biotools:primaryContact <https://orcid.org/0000-0003-3668-7468> .
 
 <https://bio.tools/thurstonianIRT> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2269 ;
     sc:citation <https://doi.org/10.1177/0013164419832063>,
         "pmcid:PMC6713979",
@@ -469960,8 +500051,21 @@ THUNDER is a deconvolution method specifically tailored to address unique challe
     sc:name "thurstonianIRT" ;
     sc:url "https://github.com/paul-buerkner/thurstonianIRT" .
 
+<https://bio.tools/thycanbio> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:description "This web server allows browsing, searching and fetching of the Biomarkers data related to ThyCanBio database." ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "thycanbio" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/thycanbio/> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/thycanbio/" .
+
 <https://bio.tools/thyme> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0623,
@@ -469985,7 +500089,7 @@ THUNDER is a deconvolution method specifically tailored to address unique challe
         "Peter Reilly" .
 
 <https://bio.tools/ti2biop> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0099,
@@ -470000,7 +500104,7 @@ THUNDER is a deconvolution method specifically tailored to address unique challe
     sc:url "http://sourceforge.net/projects/ti2biop/" .
 
 <https://bio.tools/tiaas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0605,
         edam:topic_3474 ;
     sc:citation <https://doi.org/10.1101/2020.08.23.263509> ;
@@ -470011,7 +500115,7 @@ THUNDER is a deconvolution method specifically tailored to address unique challe
     sc:url "https://galaxyproject.eu/tiaas" .
 
 <https://bio.tools/tiara> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_2885,
@@ -470033,7 +500137,7 @@ THUNDER is a deconvolution method specifically tailored to address unique challe
     biotools:primaryContact "D. Hong" .
 
 <https://bio.tools/tiara-metagenomics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0621,
@@ -470061,7 +500165,7 @@ In the Polish translation of the Harry Potter book series, the Sorting Hat (whic
     sc:url "https://ibe-uw.github.io/tiara" .
 
 <https://bio.tools/tico> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0621,
@@ -470081,7 +500185,7 @@ In the Polish translation of the Harry Potter book series, the Sorting Hat (whic
     biotools:primaryContact "TiCo Support" .
 
 <https://bio.tools/tictrainer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3303,
         edam:topic_3423 ;
@@ -470094,7 +500198,7 @@ In the Polish translation of the Harry Potter book series, the Sorting Hat (whic
     sc:url "https://tictrainer.com" .
 
 <https://bio.tools/tidb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0089,
@@ -470115,12 +500219,35 @@ In the Polish translation of the Harry Potter book series, the Sorting Hat (whic
     sc:softwareHelp <http://www.ieom-tm.com/tidb/help> ;
     sc:url "http://www.ieom-tm.com/tidb" .
 
+<https://bio.tools/tidd> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0121,
+        edam:topic_0154,
+        edam:topic_3474,
+        edam:topic_3520 ;
+    sc:citation <https://doi.org/10.1186/S12859-022-04640-Y>,
+        "pmcid:PMC8969291",
+        "pubmed:35354356" ;
+    sc:description "TIDD is a universal post-processing tool which supports confident peptide identifications regardless of the search engine adopted." ;
+    sc:featureList edam:operation_3643,
+        edam:operation_3644,
+        edam:operation_3649 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "TIDD" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://docs.google.com/document/d/168oGySS15xrobeqTY54_QLMgWQofnPIApx6ma5ntGa8/edit> ;
+    sc:url "https://github.com/HanyangBISLab/TIDD.git" .
+
 <https://bio.tools/tiddit> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1383" ;
-            sc:name "Sequence alignment (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1383" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1383" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Sequence alignment (nucleic acid)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Script" ;
     sc:applicationSubCategory edam:topic_3175,
@@ -470138,7 +500265,7 @@ In the Polish translation of the Harry Potter book series, the Sorting Hat (whic
         "Jesper Eisfeldt" .
 
 <https://bio.tools/tide> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2640,
         edam:topic_3170,
@@ -470158,7 +500285,7 @@ We validated TIDE performance on predicting anti-PD1 and anti-CTLA4 response acr
     sc:url "http://tide.dfci.harvard.edu" .
 
 <https://bio.tools/tidybulk> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3170,
@@ -470172,7 +500299,7 @@ We validated TIDE performance on predicting anti-PD1 and anti-CTLA4 response acr
     biotools:primaryContact <https://orcid.org/0000-0001-7474-836X> .
 
 <https://bio.tools/tidymicro> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0602,
@@ -470194,7 +500321,7 @@ A reliable alternative to popular microbiome analysis R packages. We provide sta
     sc:url "https://github.com/CharlieCarpenter/tidyMicro" .
 
 <https://bio.tools/tidyseurat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3170,
@@ -470211,7 +500338,7 @@ A reliable alternative to popular microbiome analysis R packages. We provide sta
     biotools:primaryContact <https://orcid.org/0000-0001-7474-836X> .
 
 <https://bio.tools/tie> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0634,
         edam:topic_0659,
@@ -470228,7 +500355,7 @@ The Tumor IsomiR Encyclopedia (TIE) is a dynamic tool that allows researchers to
     sc:url "https://github.com/Gu-Lab-RBL-NCI/TIE-database/wiki" .
 
 <https://bio.tools/tiebrush> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0622,
@@ -470248,8 +500375,20 @@ The Tumor IsomiR Encyclopedia (TIE) is a dynamic tool that allows researchers to
     biotools:primaryContact <https://orcid.org/0000-0003-0762-8637>,
         <https://orcid.org/0000-0003-1060-7212> .
 
+<https://bio.tools/tiedie> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:citation <https://doi.org/10.1093/bioinformatics/btt471> ;
+    sc:description "Application of TieDIE to The Cancer Genome Atlas and a breast cancer cell line dataset identified key signaling pathways, with examples impinging on MYC activity. Interlinking genes are predicted to correspond to essential components of cancer signaling and may provide a mechanistic explanation of tumor character and suggest subtype-specific drug targets." ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "TieDie" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/epaull/TieDIE" .
+
 <https://bio.tools/tifosi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0176,
         edam:topic_0203,
         edam:topic_0602,
@@ -470265,7 +500404,7 @@ TiFoSi (Tissues: Forces & Signalling) is a computational tool to simulate the ce
     sc:url "http://tifosi.thesimbiosys.com" .
 
 <https://bio.tools/tiga> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0625,
         edam:topic_0769,
@@ -470286,18 +500425,16 @@ Beta coefficients require units and thus are not comparable between non-converti
 
 <https://bio.tools/tigar-v2> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0920" ;
-            sc:name "Genotype/phenotype report" ;
-            sc:sameAs "http://edamontology.org/data_0920" ],
+            sc:additionalType "http://edamontology.org/data_3273" ;
+            sc:name "Sample ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3273" ;
-            sc:name "Sample ID" ;
-            sc:sameAs "http://edamontology.org/data_3273" ],
+            sc:additionalType "http://edamontology.org/data_0920" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Genotype/phenotype report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0928" ;
-            sc:name "Gene expression profile" ;
-            sc:sameAs "http://edamontology.org/data_0928" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0928" ;
+            sc:name "Gene expression profile" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0203,
@@ -470319,7 +500456,7 @@ Beta coefficients require units and thus are not comparable between non-converti
     sc:url "https://www.synapse.org/TIGAR_V2_Resource_GTExV8" .
 
 <https://bio.tools/tiger> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -470337,7 +500474,7 @@ Beta coefficients require units and thus are not comparable between non-converti
     sc:url "http://www.bme.virginia.edu/csbl/Downloads1-tiger.html" .
 
 <https://bio.tools/tiger-dna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0199,
@@ -470355,8 +500492,33 @@ Beta coefficients require units and thus are not comparable between non-converti
     sc:url "https://github.com/TheKorenLab/TIGER" ;
     biotools:primaryContact <https://orcid.org/0000-0002-7144-2602> .
 
+<https://bio.tools/tiglon> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_0196,
+        edam:topic_3170,
+        edam:topic_3308,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.1016/J.ISCI.2022.104067>,
+        "pmcid:PMC8958329",
+        "pubmed:35355524" ;
+    sc:description "Tiglon enables accurate transcriptome assembly via integrating mappings of different aligners." ;
+    sc:featureList edam:operation_0523,
+        edam:operation_0525,
+        edam:operation_2429,
+        edam:operation_3258 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "Tiglon" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/yutingsdu/Tiglon-v.1.1.git" ;
+    biotools:primaryContact "Ting Yu" .
+
 <https://bio.tools/tigmint> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3175 ;
@@ -470375,7 +500537,7 @@ Beta coefficients require units and thus are not comparable between non-converti
     biotools:primaryContact "BC Cancer Canada's Michael Smith Genome Sciences Centre" .
 
 <https://bio.tools/tigr_gene_indices> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
@@ -470399,7 +500561,7 @@ Beta coefficients require units and thus are not comparable between non-converti
     biotools:primaryContact "johnq@tigr.org" .
 
 <https://bio.tools/tigr_software_tools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0160,
@@ -470419,18 +500581,18 @@ Beta coefficients require units and thus are not comparable between non-converti
 
 <https://bio.tools/tigre> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Gene expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ] ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_1638" ;
+            sc:name "Gene expression data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ],
+            sc:additionalType "http://edamontology.org/data_3111" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Processed microarray data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3111" ;
-            sc:name "Processed microarray data" ;
-            sc:sameAs "http://edamontology.org/data_3111" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -470452,7 +500614,7 @@ Beta coefficients require units and thus are not comparable between non-converti
     biotools:primaryContact "Antti Honkela" .
 
 <https://bio.tools/tigre-tomo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -470469,14 +500631,13 @@ Beta coefficients require units and thus are not comparable between non-converti
 
 <https://bio.tools/tigrfams> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1141" ;
-            sc:name "TIGRFam ID" ;
-            sc:sameAs "http://edamontology.org/data_1141" ] ;
+            sc:additionalType "http://edamontology.org/data_1141" ;
+            sc:name "TIGRFam ID" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1354" ;
-            sc:name "Sequence profile" ;
-            sc:sameAs "http://edamontology.org/data_1354" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1354" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Sequence profile" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0623 ;
@@ -470494,7 +500655,7 @@ Beta coefficients require units and thus are not comparable between non-converti
     sc:url "http://tigrfams.jcvi.org/cgi-bin/index.cgi" .
 
 <https://bio.tools/tikal> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3382,
@@ -470507,8 +500668,30 @@ Beta coefficients require units and thus are not comparable between non-converti
     sc:softwareHelp <https://ibios.dkfz.de/tbi/index.php/software/further-software/99-tikal> ;
     sc:url "http://ibios.dkfz.de/tbi/index.php/software/further-software/99-tikal" .
 
+<https://bio.tools/til_classification> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0634,
+        edam:topic_0769,
+        edam:topic_2640,
+        edam:topic_3360,
+        edam:topic_3382 ;
+    sc:citation <https://doi.org/10.3389/FONC.2021.806603>,
+        "pmcid:PMC8889499",
+        "pubmed:35251953" ;
+    sc:description "Deep Learning-Based Mapping of Tumor Infiltrating Lymphocytes in Whole Slide Images of 23 Types of Cancer." ;
+    sc:featureList edam:operation_2429,
+        edam:operation_3927 ;
+    sc:isAccessibleForFree true ;
+    sc:license "BSD-3-Clause" ;
+    sc:name "TIL classification" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/ShahiraAbousamra/til_classification" .
+
 <https://bio.tools/tilehmm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3179 ;
     sc:citation <https://doi.org/10.1186/1471-2105-9-343> ;
@@ -470525,7 +500708,7 @@ Beta coefficients require units and thus are not comparable between non-converti
     sc:url "http://www.bioinformatics.csiro.au/tilehmm/" .
 
 <https://bio.tools/tileqc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3572 ;
     sc:citation "pubmed:18507856" ;
@@ -470535,7 +500718,7 @@ Beta coefficients require units and thus are not comparable between non-converti
     sc:url "http://denverlab.science.oregonstate.edu/tileqc/" .
 
 <https://bio.tools/tilingarray> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3518 ;
@@ -470555,7 +500738,7 @@ Beta coefficients require units and thus are not comparable between non-converti
     biotools:primaryContact "Zhenyu Xu" .
 
 <https://bio.tools/tilingscan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0654,
@@ -470570,8 +500753,28 @@ Beta coefficients require units and thus are not comparable between non-converti
     sc:softwareHelp <http://tilingscan.uv.es/tutorial> ;
     sc:url "http://tilingscan.uv.es/" .
 
+<https://bio.tools/tim-net> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0634,
+        edam:topic_3382,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1155/2022/9016401>,
+        "pmcid:PMC9293566",
+        "pubmed:35859930" ;
+    sc:description "Transformer in M-Net for Retinal Vessel Segmentation." ;
+    sc:featureList edam:operation_3443,
+        edam:operation_3799 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "TiM-Net" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/ZX-ECJTU/TiM-Net" .
+
 <https://bio.tools/timat2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_3169,
         edam:topic_3518 ;
@@ -470586,7 +500789,7 @@ Beta coefficients require units and thus are not comparable between non-converti
     biotools:primaryContact "TiMAT2 Support" .
 
 <https://bio.tools/time-resolved-image-analyzer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0593,
         edam:topic_3344 ;
@@ -470603,7 +500806,7 @@ Beta coefficients require units and thus are not comparable between non-converti
     biotools:primaryContact "ryan muddiman" .
 
 <https://bio.tools/timeclip> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0085 ;
     sc:citation <https://doi.org/10.1186/1471-2105-15-S5-S3>,
@@ -470623,7 +500826,7 @@ Beta coefficients require units and thus are not comparable between non-converti
     biotools:primaryContact "Chiara Romualdi" .
 
 <https://bio.tools/timeclust> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0654 ;
@@ -470638,7 +500841,7 @@ Beta coefficients require units and thus are not comparable between non-converti
     sc:url "http://aimed11.unipv.it/TimeClust/" .
 
 <https://bio.tools/timecourse> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3518 ;
@@ -470656,7 +500859,7 @@ Beta coefficients require units and thus are not comparable between non-converti
     biotools:primaryContact "Yu Chuan Tai" .
 
 <https://bio.tools/timecycle> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3170,
@@ -470679,7 +500882,7 @@ Beta coefficients require units and thus are not comparable between non-converti
     sc:url "https://github.com/nesscoder/TimeCycle-data" .
 
 <https://bio.tools/timelapseanalyzer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3382,
         edam:topic_3383,
@@ -470695,7 +500898,7 @@ Beta coefficients require units and thus are not comparable between non-converti
     sc:url "http://www.informatik.uni-ulm.de/ni/mitarbeiter/HKestler/tla/" .
 
 <https://bio.tools/timelessflex> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0204,
@@ -470718,7 +500921,7 @@ TimelessFlex is a flexible framework for investigating chromatin state trajector
     sc:url "https://github.com/henriettemiko/TimelessFlex" .
 
 <https://bio.tools/timenexus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -470736,7 +500939,7 @@ Build, manage and visualize temporal multilayer networks, as well as extract act
     sc:url "https://apps.cytoscape.org/apps/TimeNexus" .
 
 <https://bio.tools/timeomics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3047,
@@ -470756,7 +500959,7 @@ Build, manage and visualize temporal multilayer networks, as well as extract act
     sc:url "http://github.com/abodein/timeOmics" .
 
 <https://bio.tools/timeor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0659,
         edam:topic_0749,
@@ -470779,7 +500982,7 @@ Analyzing time series differential gene expression and other multi-omics data is
     sc:url "https://github.com/ashleymaeconard/TIMEOR.git" .
 
 <https://bio.tools/timer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_2640,
         edam:topic_3170,
@@ -470799,18 +501002,15 @@ Tumor progression and the efficacy of immunotherapy are strongly influenced by t
 
 <https://bio.tools/timescape> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0920" ;
-            sc:name "Genotype/phenotype report" ;
-            sc:sameAs "http://edamontology.org/data_0920" ],
+            sc:additionalType "http://edamontology.org/data_0920" ;
+            sc:name "Genotype/phenotype report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2523" ;
-            sc:name "Phylogenetic data" ;
-            sc:sameAs "http://edamontology.org/data_2523" ] ;
+            sc:additionalType "http://edamontology.org/data_2523" ;
+            sc:name "Phylogenetic data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Plug-in" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -470833,7 +501033,7 @@ Tumor progression and the efficacy of immunotherapy are strongly influenced by t
     biotools:primaryContact "Maia Smith" .
 
 <https://bio.tools/timeseriesNEM> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0659,
         edam:topic_3382 ;
@@ -470846,7 +501046,7 @@ Tumor progression and the efficacy of immunotherapy are strongly influenced by t
     sc:url "https://github.com/cbg-ethz/timeseriesNEM" .
 
 <https://bio.tools/timesets> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0218,
         edam:topic_0621,
         edam:topic_3382 ;
@@ -470858,7 +501058,7 @@ Tumor progression and the efficacy of immunotherapy are strongly influenced by t
     sc:url "http://vis4sense.github.io/timesets" .
 
 <https://bio.tools/timesias> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0769,
@@ -470876,13 +501076,38 @@ Tumor progression and the efficacy of immunotherapy are strongly influenced by t
         "Windows" ;
     sc:url "https://github.com/GuanLab/timesias.git" .
 
+<https://bio.tools/timesvector-web> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0602,
+        edam:topic_0659,
+        edam:topic_3170,
+        edam:topic_3308,
+        edam:topic_3518 ;
+    sc:citation <https://doi.org/10.3390/GENES13010073>,
+        "pmcid:PMC8775016",
+        "pubmed:35052413" ;
+    sc:description "A Web Service for Analysing Time Course Transcriptome Data with Multiple Conditions." ;
+    sc:featureList edam:operation_0315,
+        edam:operation_2436,
+        edam:operation_3223,
+        edam:operation_3432 ;
+    sc:isAccessibleForFree true ;
+    sc:name "TimesVector-web" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://cobi.knu.ac.kr/webserv/TimesVector-web" .
+
 <https://bio.tools/timetree> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0219,
         edam:topic_0637,
         edam:topic_3293 ;
-    sc:citation "pubmed:21622662" ;
+    sc:citation <https://doi.org/10.1093/molbev/msx116>,
+        "pubmed:21622662",
+        "pubmed:28387841" ;
     sc:description "A public resource for knowledge on the timescale and evolutionary history of life.A search utility allows exploration of the thousands of divergence times among organisms in the published literature. A tree-based (hierarchical) system is used to identify all published molecular time estimates bearing on the divergence of two chosen taxa, such as species, compute summary statistics, and present the results." ;
     sc:featureList edam:operation_0324,
         edam:operation_2421 ;
@@ -470894,7 +501119,7 @@ Tumor progression and the efficacy of immunotherapy are strongly influenced by t
     sc:url "http://www.timetree.org/" .
 
 <https://bio.tools/timetrial> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0632,
         edam:topic_3170,
         edam:topic_3300,
@@ -470914,7 +501139,7 @@ TimeTrial is an interactive application for the design and optimization of omic
     sc:url "https://nesscoder.shinyapps.io/TimeTrial_Synthetic/" .
 
 <https://bio.tools/timex> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Bioinformatics portal" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_2640,
@@ -470934,7 +501159,7 @@ TimeTrial is an interactive application for the design and optimization of omic
     biotools:primaryContact <https://orcid.org/0000-0003-2955-8369> .
 
 <https://bio.tools/timexnet_web> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0622,
@@ -470951,7 +501176,7 @@ TimeTrial is an interactive application for the design and optimization of omic
     biotools:primaryContact "Support" .
 
 <https://bio.tools/timiner> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0804,
         edam:topic_2640,
@@ -470969,7 +501194,7 @@ TimeTrial is an interactive application for the design and optimization of omic
     biotools:primaryContact "Zlatko Trajanoski" .
 
 <https://bio.tools/timirgen> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -470989,20 +501214,53 @@ TimeTrial is an interactive application for the design and optimization of omic
     biotools:primaryContact <https://orcid.org/0000-0001-6806-8675>,
         "Daryl Shanley" .
 
+<https://bio.tools/timothy> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:citation <https://doi.org/10.1109/MCSE.2014.2> ;
+    sc:description """Timothy is a novel large scale parallel computational model allowing 3-D simulations of cell colonies growing and interacting with variable environment in previously unavailable tissue scale.
+The cells are modeled as individuals located in the lattice-free 3-D space. The model incorporates cellular environment modelled in a continuous manner, mathematical description based on partial differential equations is formulated for selected important components of the environment. Discrete and continuous formulations are efficiently coupled in one model and allow considerations on different scales: sub-cellular, cellular and tissue scale.
+High parallel scalability achieved allows simulation of up to 109 individual cells. This large scale computational approach allows for simulations to be carried out over realistic spatial scales up to 1cm in size i.e. the tissue scale.""" ;
+    sc:isAccessibleForFree true ;
+    sc:license "gnuplot" ;
+    sc:name "Timothy" ;
+    sc:operatingSystem "Linux" ;
+    sc:softwareHelp <https://timothy.icm.edu.pl/examples.html> ;
+    sc:softwareVersion "0.9" ;
+    sc:url "https://timothy.icm.edu.pl/index.html" .
+
+<https://bio.tools/timsconver> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0091,
+        edam:topic_0769,
+        edam:topic_3520 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC419>,
+        "pubmed:35758608" ;
+    sc:description "A workflow to convert trapped ion mobility data to open data formats." ;
+    sc:featureList edam:operation_0335,
+        edam:operation_1812 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Apache-2.0" ;
+    sc:name "TIMSCONVER" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/gtluu/timsconvert" .
+
 <https://bio.tools/tin> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Gene expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ] ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_1638" ;
+            sc:name "Gene expression data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1669" ;
-            sc:name "P-value" ;
-            sc:sameAs "http://edamontology.org/data_1669" ],
+            sc:additionalType "http://edamontology.org/data_1669" ;
+            sc:encodingFormat "http://edamontology.org/format_3508" ;
+            sc:name "P-value" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3508" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -471021,7 +501279,7 @@ TimeTrial is an interactive application for the design and optimization of omic
     biotools:primaryContact "Bjarne Johannessen" .
 
 <https://bio.tools/tindermix> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
         edam:topic_2840 ;
@@ -471039,7 +501297,7 @@ TinderMIX is a new computational framework for dose- and time- dependent gene ex
     sc:url "https://github.com/grecolab/TinderMIX" .
 
 <https://bio.tools/ting> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0160,
         edam:topic_2229,
@@ -471054,7 +501312,7 @@ TinderMIX is a new computational framework for dose- and time- dependent gene ex
     sc:url "https://github.com/FelixMoelder/ting" .
 
 <https://bio.tools/tinga> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3308,
         edam:topic_3474 ;
@@ -471072,7 +501330,7 @@ These instructions show how to use TinGa on an example single cell dataset and h
     sc:url "https://github.com/Helena-todd/TinGa" .
 
 <https://bio.tools/tinker-hp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0176,
         edam:topic_3299,
@@ -471091,14 +501349,14 @@ These instructions show how to use TinGa on an example single cell dataset and h
 
 <https://bio.tools/tinselr> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1442" ;
-            sc:name "Phylogenetic tree distances" ;
-            sc:sameAs "http://edamontology.org/data_1442" ],
+            sc:additionalType "http://edamontology.org/data_1442" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Phylogenetic tree distances" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0872" ;
-            sc:name "Phylogenetic tree" ;
-            sc:sameAs "http://edamontology.org/data_0872" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0872" ;
+            sc:encodingFormat "http://edamontology.org/format_1910" ;
+            sc:name "Phylogenetic tree" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0769,
@@ -471123,7 +501381,7 @@ These instructions show how to use TinGa on an example single cell dataset and h
     sc:url "https://jennahamlin.github.io/tinselR/" .
 
 <https://bio.tools/tipmt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0632 ;
@@ -471144,7 +501402,7 @@ These instructions show how to use TinGa on an example single cell dataset and h
         "Robson da Silva Lopes" .
 
 <https://bio.tools/tipp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0637,
         edam:topic_3174,
@@ -471160,7 +501418,7 @@ These instructions show how to use TinGa on an example single cell dataset and h
     sc:url "http://www.cs.utexas.edu/users/phylo/software/sepp/tipp-submission/" .
 
 <https://bio.tools/tipr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_0749,
@@ -471176,7 +501434,7 @@ These instructions show how to use TinGa on an example single cell dataset and h
     sc:url "http://megraw.cgrb.oregonstate.edu/software/TIPR/" .
 
 <https://bio.tools/tips> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0621,
@@ -471194,7 +501452,7 @@ These instructions show how to use TinGa on an example single cell dataset and h
     biotools:primaryContact "Rosalba Lepore" .
 
 <https://bio.tools/tiquant> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_2259,
         edam:topic_3337,
@@ -471209,8 +501467,31 @@ These instructions show how to use TinGa on an example single cell dataset and h
     sc:softwareHelp <http://www.msysbio.com/tiquant> ;
     sc:url "http://www.msysbio.com/tiquant" .
 
+<https://bio.tools/tirsf> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_0928" ;
+            sc:name "Gene expression profile" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_2640,
+        edam:topic_3053,
+        edam:topic_3170 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAC374>,
+        "pmcid:PMC9252797",
+        "pubmed:35554556" ;
+    sc:description "A web server for screening gene signatures to predict Tumor immunotherapy response." ;
+    sc:featureList edam:operation_0252,
+        edam:operation_0314,
+        edam:operation_2454 ;
+    sc:isAccessibleForFree true ;
+    sc:name "TIRSF" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://tirsf.renlab.org/" .
+
 <https://bio.tools/tis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0749,
         edam:topic_0769,
@@ -471229,7 +501510,7 @@ The TA are distributed relatively evenly along genome. The Mariner-based transpo
     sc:url "https://bit.ly/gxy-tis" .
 
 <https://bio.tools/tisan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0622,
@@ -471246,7 +501527,7 @@ The TA are distributed relatively evenly along genome. The Mariner-based transpo
     biotools:primaryContact "Jacob J Michaelson" .
 
 <https://bio.tools/tisch> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2229,
         edam:topic_2640,
@@ -471265,7 +501546,7 @@ Tumor Immune Single-cell Hub (TISCH) is a scRNA-seq database focusing on tumor m
     sc:url "http://tisch.comp-genomics.org" .
 
 <https://bio.tools/tisigner> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Bioinformatics portal" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0154,
@@ -471284,7 +501565,7 @@ Tumor Immune Single-cell Hub (TISCH) is a scRNA-seq database focusing on tumor m
     biotools:primaryContact <https://orcid.org/0000-0002-7808-1213> .
 
 <https://bio.tools/tismo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Script" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -471307,7 +501588,7 @@ Tumor Immune Single-cell Hub (TISCH) is a scRNA-seq database focusing on tumor m
     sc:url "https://github.com/zexian/TISMO_data" .
 
 <https://bio.tools/tison> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0203,
@@ -471328,7 +501609,7 @@ Tumor Immune Single-cell Hub (TISCH) is a scRNA-seq database focusing on tumor m
     biotools:primaryContact "Safee U Chaudhary" .
 
 <https://bio.tools/tissueenrich> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3168 ;
@@ -471344,16 +501625,59 @@ Tumor Immune Single-cell Hub (TISCH) is a scRNA-seq database focusing on tumor m
     sc:url "http://bioconductor.org/packages/release/bioc/html/TissueEnrich.html" ;
     biotools:primaryContact "Ashish Jain" .
 
+<https://bio.tools/tissuenet> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0128,
+        edam:topic_0625,
+        edam:topic_3308 ;
+    sc:citation <https://doi.org/10.1016/J.JMB.2022.167532>,
+        "pubmed:35662455" ;
+    sc:description "Database of protein-protein interactions across adult and embryonic human tissues" ;
+    sc:featureList edam:operation_0224,
+        edam:operation_3630 ;
+    sc:isAccessibleForFree true ;
+    sc:name "TissueNet" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://netbio.bgu.ac.il/tissuenet3" .
+
+<https://bio.tools/tissuenexus> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2299" ;
+            sc:name "Gene name" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0602,
+        edam:topic_0634,
+        edam:topic_2229,
+        edam:topic_3170 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAB1133>,
+        "pmcid:PMC8728275",
+        "pubmed:34850130" ;
+    sc:description "A database of human tissue functional gene networks built with a large compendium of curated RNA-seq data." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_1781,
+        edam:operation_2437,
+        edam:operation_3463,
+        edam:operation_3925 ;
+    sc:isAccessibleForFree true ;
+    sc:name "TissueNexus" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://www.diseaselinks.com/TissueNexus/" .
+
 <https://bio.tools/tissues> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1025" ;
-            sc:name "Gene identifier" ;
-            sc:sameAs "http://edamontology.org/data_1025" ] ;
+            sc:additionalType "http://edamontology.org/data_1025" ;
+            sc:name "Gene identifier" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1087" ;
-            sc:name "Ontology concept ID" ;
-            sc:sameAs "http://edamontology.org/data_1087" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1087" ;
+            sc:name "Ontology concept ID" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0203,
@@ -471373,12 +501697,42 @@ Tumor Immune Single-cell Hub (TISCH) is a scRNA-seq database focusing on tumor m
     biotools:primaryContact "Jan Gorodkin",
         "Lars Juhl Jensen" .
 
+<https://bio.tools/tissuespace> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1033" ;
+            sc:name "Ensembl gene ID" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_0928" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Gene expression profile" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_2640,
+        edam:topic_3170,
+        edam:topic_3308,
+        edam:topic_3388,
+        edam:topic_3518 ;
+    sc:citation <https://doi.org/10.1007/S13258-022-01245-W>,
+        "pubmed:35511320" ;
+    sc:description "A web tool for rank-based transcriptome representation and its applications in molecular medicine." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_2436,
+        edam:operation_3503 ;
+    sc:isAccessibleForFree true ;
+    sc:name "TissueSpace" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://bioinformatics.fafu.edu.cn/tissuespace/" .
+
 <https://bio.tools/tissuumaps> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2229,
         edam:topic_3382 ;
     sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAA541>,
+        <https://doi.org/10.1101/2022.01.28.478131>,
         "pmcid:PMC7520034",
         "pubmed:32449759" ;
     sc:description """TissUUmaps  is an interactive visualization of large-scale spatial gene expression and tissue morphology data.
@@ -471391,13 +501745,17 @@ TissUUmaps allows the display of tissue slide images and uses an overlay to disp
     sc:featureList edam:operation_0571,
         edam:operation_3443,
         edam:operation_3802 ;
+    sc:isAccessibleForFree true ;
     sc:license "GPL-3.0" ;
     sc:name "TissUUmaps" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
     sc:softwareHelp <http://tissuumaps.research.it.uu.se/howto.html> ;
-    sc:url "http://github.com/wahlby-lab/TissUUmaps" .
+    sc:url "https://tissuumaps.github.io" .
 
 <https://bio.tools/titancna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2269,
@@ -471424,7 +501782,7 @@ TissUUmaps allows the display of tissue slide images and uses an overlay to disp
         "Sohrab P Shah" .
 
 <https://bio.tools/tite-pk> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3375,
         edam:topic_3379 ;
@@ -471437,7 +501795,7 @@ TissUUmaps allows the display of tissue slide images and uses an overlay to disp
     sc:url "https://github.com/gunhanb/TITEPK_sequential" .
 
 <https://bio.tools/titta> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3361,
         edam:topic_3489 ;
     sc:citation <https://doi.org/10.3758/S13428-020-01358-8>,
@@ -471455,7 +501813,7 @@ Titta is a toolbox for using eye trackers from Tobii Pro AB with Python, specifi
     sc:url "https://github.com/dcnieho/Titta" .
 
 <https://bio.tools/titus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_3305,
         edam:topic_3324 ;
@@ -471469,7 +501827,7 @@ TiTUS is a code that takes as input a timed pathogen phylogeny with leaves label
     sc:url "https://github.com/elkebir-group/TiTUS" .
 
 <https://bio.tools/tju-dhd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3382,
         edam:topic_3520 ;
@@ -471484,7 +501842,7 @@ TiTUS is a code that takes as input a timed pathogen phylogeny with leaves label
     sc:url "https://github.com/tjubiit/TJU-DHD" .
 
 <https://bio.tools/tkwidgets> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -471504,7 +501862,7 @@ TiTUS is a code that takes as input a timed pathogen phylogeny with leaves label
     biotools:primaryContact "J. Zhang" .
 
 <https://bio.tools/tlcluster> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:description "Used to perform clustering on fasta formatted sequences." ;
@@ -471516,7 +501874,7 @@ TiTUS is a code that takes as input a timed pathogen phylogeny with leaves label
     sc:url "https://genome.uiowa.edu/home.old/pubsoft/software.html" .
 
 <https://bio.tools/tlinkage> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0634,
@@ -471530,8 +501888,21 @@ TiTUS is a code that takes as input a timed pathogen phylogeny with leaves label
     sc:softwareHelp <http://www.jurgott.org/linkage/tlinkage.htm> ;
     sc:url "http://www.jurgott.org/linkage/tlinkage.htm" .
 
+<https://bio.tools/tlr4hi> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:description "Prediction of inhibitors against human tlr4" ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "tlr4hi" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/tlr4hi/> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/tlr4hi/" .
+
 <https://bio.tools/tls_motion_determination> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121 ;
     sc:description "TLS Motion Determination analyzes a macromolecular crystal structure for evidence of flexibility, e.g. local or inter-domain motions. It does this by partitioning individual chains into multiple segments that are modeled as rigid bodies undergoing TLS (Translation/Libration/Screw) vibrational motion. It generates all possible partitions up to a maximum number of segments." ;
@@ -471545,7 +501916,7 @@ TiTUS is a code that takes as input a timed pathogen phylogeny with leaves label
     biotools:primaryContact "Ethan Merritt" .
 
 <https://bio.tools/tm-aligner> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0097,
@@ -471565,7 +501936,7 @@ TiTUS is a code that takes as input a timed pathogen phylogeny with leaves label
         "Garima Singh" .
 
 <https://bio.tools/tm-score> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_2814 ;
@@ -471579,7 +501950,7 @@ TiTUS is a code that takes as input a timed pathogen phylogeny with leaves label
     sc:url "http://zhanglab.ccmb.med.umich.edu/TM-score/" .
 
 <https://bio.tools/tma_navigator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -471602,7 +501973,7 @@ TiTUS is a code that takes as input a timed pathogen phylogeny with leaves label
     biotools:primaryContact "Contact Form" .
 
 <https://bio.tools/tmaj> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3518 ;
     sc:description "It is for Tissue MicroArrays (TMA’s). Patients, specimens, blocks, slides, cores, images, and scores can all be stored and viewed. Features include advanced security, custom dynamic fields, and an image analysis program." ;
@@ -471616,7 +501987,7 @@ TiTUS is a code that takes as input a timed pathogen phylogeny with leaves label
     sc:url "http://tmaj.pathology.jhmi.edu/" .
 
 <https://bio.tools/tmap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0102 ;
@@ -471634,7 +502005,7 @@ TiTUS is a code that takes as input a timed pathogen phylogeny with leaves label
     biotools:primaryContact "GitHub Issues" .
 
 <https://bio.tools/tmap-visual> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2258,
         edam:topic_2640,
         edam:topic_3369 ;
@@ -471647,7 +502018,7 @@ TiTUS is a code that takes as input a timed pathogen phylogeny with leaves label
     sc:url "http://tmap.gdb.tools" .
 
 <https://bio.tools/tmarg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0634,
@@ -471664,7 +502035,7 @@ TiTUS is a code that takes as input a timed pathogen phylogeny with leaves label
     sc:url "http://www.engr.uconn.edu/~ywu/TMARG.html" .
 
 <https://bio.tools/tmatch> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3293 ;
     sc:citation <https://doi.org/10.1109/69.298173> ;
@@ -471676,7 +502047,7 @@ TiTUS is a code that takes as input a timed pathogen phylogeny with leaves label
     sc:url "http://web.njit.edu/~wangj/tmatch.html" .
 
 <https://bio.tools/tmax> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_2269,
@@ -471692,7 +502063,7 @@ TiTUS is a code that takes as input a timed pathogen phylogeny with leaves label
     sc:url "http://wpicr.wpic.pitt.edu/WPICCompGen/tmax.html" .
 
 <https://bio.tools/tmb-hunt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0154,
@@ -471709,8 +502080,32 @@ TiTUS is a code that takes as input a timed pathogen phylogeny with leaves label
     sc:name "TMB-Hunt" ;
     sc:url "http://bmbpcu36.leeds.ac.uk/~andy/betaBarrel/AACompPred/aaTMB_Hunt.cgi" .
 
+<https://bio.tools/tmbed> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0121,
+        edam:topic_0154,
+        edam:topic_0736,
+        edam:topic_0820,
+        edam:topic_3510 ;
+    sc:citation <https://doi.org/10.1186/s12859-022-04873-x>,
+        "pmcid:PMC9358067",
+        "pubmed:35941534" ;
+    sc:description "Transmembrane proteins predicted through Language Model embeddings." ;
+    sc:featureList edam:operation_0269,
+        edam:operation_0408,
+        edam:operation_0474,
+        edam:operation_2241 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Apache-2.0" ;
+    sc:name "TMbed" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/BernhoferM/TMbed" .
+
 <https://bio.tools/tmbeta-net> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -471727,8 +502122,30 @@ TiTUS is a code that takes as input a timed pathogen phylogeny with leaves label
     sc:name "TMBETA-NET" ;
     sc:url "http://psfs.cbrc.jp/tmbeta-net/" .
 
+<https://bio.tools/tmbler> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0199,
+        edam:topic_0622,
+        edam:topic_3360,
+        edam:topic_3673,
+        edam:topic_3676 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAB836>,
+        "pubmed:34927668" ;
+    sc:description "Bioinformatic tool to optimize TMB estimation and predictive power." ;
+    sc:featureList edam:operation_3435,
+        edam:operation_3675,
+        edam:operation_3799 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "TMBleR" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://acc-bioinfo.github.io/TMBleR/" .
+
 <https://bio.tools/tmbstan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_2269,
@@ -471745,7 +502162,7 @@ TiTUS is a code that takes as input a timed pathogen phylogeny with leaves label
     biotools:primaryContact "Kasper Kristensen" .
 
 <https://bio.tools/tmcrys> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0122,
         edam:topic_0820,
@@ -471762,7 +502179,7 @@ TiTUS is a code that takes as input a timed pathogen phylogeny with leaves label
     biotools:primaryContact "Gábor E Tusnády" .
 
 <https://bio.tools/tmescore> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_2640,
@@ -471786,7 +502203,7 @@ TiTUS is a code that takes as input a timed pathogen phylogeny with leaves label
     sc:url "https://github.com/DongqiangZeng0808/TMEscore" .
 
 <https://bio.tools/tmexplorer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2640,
         edam:topic_3170 ;
@@ -471801,7 +502218,7 @@ TMExplorer (Tumour Microenvironment Explorer) is a curated collection of scRNAse
     sc:url "https://github.com/shooshtarilab/TMExplorer" .
 
 <https://bio.tools/tmh_benchmark> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0130,
         edam:topic_0736,
@@ -471819,7 +502236,7 @@ TMExplorer (Tumour Microenvironment Explorer) is a curated collection of scRNAse
     biotools:primaryContact "Andrew Kernytsky" .
 
 <https://bio.tools/tmhcon> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0602,
@@ -471836,8 +502253,21 @@ TMExplorer (Tumour Microenvironment Explorer) is a curated collection of scRNAse
     sc:softwareVersion "20101215" ;
     sc:url "http://webclu.bio.wzw.tum.de/tmhcon/index.html" .
 
+<https://bio.tools/tmhcpred> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:description "The server will predict MHC Class I and II binding peptides. The prediction based on the virtual and quantitative matrices." ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "tmhcpred" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/tmhcpred/> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/tmhcpred/" .
+
 <https://bio.tools/tmhhcp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0602,
@@ -471854,18 +502284,18 @@ TMExplorer (Tumour Microenvironment Explorer) is a curated collection of scRNAse
 
 <https://bio.tools/tmhmm> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2955" ;
-            sc:name "Sequence report" ;
-            sc:sameAs "http://edamontology.org/data_2955" ],
+            sc:additionalType "http://edamontology.org/data_2955" ;
+            sc:encodingFormat "http://edamontology.org/format_2333" ;
+            sc:name "Sequence report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:encodingFormat "http://edamontology.org/format_2305" ;
+            sc:name "Protein features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application",
         "Web service" ;
@@ -471890,14 +502320,12 @@ TMExplorer (Tumour Microenvironment Explorer) is a curated collection of scRNAse
 
 <https://bio.tools/tmhmmfix> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:name "Protein sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:name "Protein features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1016/S0022-2836(03)00182-7> ;
@@ -471909,7 +502337,7 @@ TMExplorer (Tumour Microenvironment Explorer) is a curated collection of scRNAse
     sc:url "http://www.sbc.su.se/%7Emelen/TMHMMfix/" .
 
 <https://bio.tools/tmhop> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0736,
         edam:topic_0820,
         edam:topic_3318 ;
@@ -471924,7 +502352,7 @@ TMExplorer (Tumour Microenvironment Explorer) is a curated collection of scRNAse
     sc:url "http://tmhop.weizmann.ac.il" .
 
 <https://bio.tools/tmixclust> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2269 ;
@@ -471941,7 +502369,7 @@ TMExplorer (Tumour Microenvironment Explorer) is a curated collection of scRNAse
     biotools:primaryContact "Monica Golumbeanu" .
 
 <https://bio.tools/tmkink> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0736,
@@ -471957,7 +502385,7 @@ TMExplorer (Tumour Microenvironment Explorer) is a curated collection of scRNAse
     sc:url "http://tmkinkpredictor.mbi.ucla.edu/" .
 
 <https://bio.tools/tml-mp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0130,
@@ -471974,8 +502402,30 @@ TMExplorer (Tumour Microenvironment Explorer) is a curated collection of scRNAse
     sc:url "http://weilab.math.msu.edu/TML/TML-MP/" ;
     biotools:primaryContact "Guo-Wei Wei" .
 
+<https://bio.tools/tmnp> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Expression data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0202,
+        edam:topic_3303,
+        edam:topic_3308 ;
+    sc:citation <https://doi.org/10.1093/BIB/BBAB542>,
+        "pubmed:34933331" ;
+    sc:description "A transcriptome-based multi-scale network pharmacology platform for herbal medicine." ;
+    sc:featureList edam:operation_0314 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "TMNP" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://www.bcxnfz.top/TMNP" .
+
 <https://bio.tools/tmp-ssurface2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0166,
@@ -471995,7 +502445,7 @@ TMExplorer (Tumour Microenvironment Explorer) is a curated collection of scRNAse
     biotools:primaryContact "Li Zhang" .
 
 <https://bio.tools/tmpad> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0130,
         edam:topic_0153,
@@ -472017,7 +502467,7 @@ TMExplorer (Tumour Microenvironment Explorer) is a curated collection of scRNAse
     biotools:primaryContact "Ting-Yi Sung" .
 
 <https://bio.tools/tmpd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0622,
@@ -472036,7 +502486,7 @@ TMExplorer (Tumour Microenvironment Explorer) is a curated collection of scRNAse
     biotools:primaryContact "Support" .
 
 <https://bio.tools/tmpred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0736,
@@ -472053,7 +502503,7 @@ TMExplorer (Tumour Microenvironment Explorer) is a curated collection of scRNAse
     biotools:primaryContact "TMPred Support" .
 
 <https://bio.tools/tmprime> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0196,
@@ -472069,7 +502519,7 @@ TMExplorer (Tumour Microenvironment Explorer) is a curated collection of scRNAse
     sc:url "http://prime.ibn.a-star.edu.sg" .
 
 <https://bio.tools/tmqm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3314,
         edam:topic_3318,
@@ -472084,18 +502534,17 @@ TMExplorer (Tumour Microenvironment Explorer) is a curated collection of scRNAse
 
 <https://bio.tools/tmseg> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1192" ;
-            sc:name "Tool name (BLAST)" ;
-            sc:sameAs "http://edamontology.org/data_1192" ],
+            sc:additionalType "http://edamontology.org/data_2886" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence record" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2886" ;
-            sc:name "Protein sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2886" ] ;
+            sc:additionalType "http://edamontology.org/data_1192" ;
+            sc:encodingFormat "http://edamontology.org/format_2064" ;
+            sc:name "Tool name (BLAST)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:name "Protein structure" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0820 ;
     sc:author "Michael Bernhofer" ;
@@ -472111,7 +502560,7 @@ TMExplorer (Tumour Microenvironment Explorer) is a curated collection of scRNAse
     sc:url "https://github.com/Rostlab/TMSEG" .
 
 <https://bio.tools/tmsnp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0736,
         edam:topic_0820,
@@ -472128,7 +502577,7 @@ TMExplorer (Tumour Microenvironment Explorer) is a curated collection of scRNAse
     sc:url "http://lmc.uab.es/tmsnp/" .
 
 <https://bio.tools/tmsoc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0157,
@@ -472150,7 +502599,7 @@ TMExplorer (Tumour Microenvironment Explorer) is a curated collection of scRNAse
     biotools:primaryContact "TMSOC Support" .
 
 <https://bio.tools/tmvar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0203,
@@ -472166,7 +502615,7 @@ TMExplorer (Tumour Microenvironment Explorer) is a curated collection of scRNAse
     sc:url "https://www.ncbi.nlm.nih.gov/research/bionlp/Tools/tmvar/" .
 
 <https://bio.tools/tn-core> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0203,
         edam:topic_0625,
@@ -472186,8 +502635,31 @@ Transposon-sequencing (TnSeq) and genome-scale constraint-based metabolic modell
     sc:name "Tn-Core" ;
     sc:url "http://combo.dbe.unifi.it/tncore" .
 
+<https://bio.tools/tnbcis> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0602,
+        edam:topic_0622,
+        edam:topic_2640,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.3389/FIMMU.2021.749459>,
+        "pmcid:PMC8484710",
+        "pubmed:34603338" ;
+    sc:description "A Machine Learning Model to Predict the Triple Negative Breast Cancer Immune Subtype." ;
+    sc:featureList edam:operation_0313,
+        edam:operation_0314,
+        edam:operation_3463,
+        edam:operation_3891 ;
+    sc:isAccessibleForFree true ;
+    sc:name "TNBCIS" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://immunotypes.shinyapps.io/TNBCIS/" .
+
 <https://bio.tools/tncentral> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Bioinformatics portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0749,
@@ -472203,8 +502675,32 @@ Transposon-sequencing (TnSeq) and genome-scale constraint-based metabolic modell
     sc:url "https://tncentral.proteininformationresource.org/" ;
     biotools:primaryContact <https://orcid.org/0000-0002-0292-6662> .
 
+<https://bio.tools/tncrnas> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0659,
+        edam:topic_0780,
+        edam:topic_3170,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.1016/J.CSBJ.2021.09.021>,
+        "pmcid:PMC8482286",
+        "pubmed:34630945" ;
+    sc:description "tncRNA Toolkit is a pipeline, designed for convenient identification of tncRNAs. It identifies the tncRNAs using small RNA sequencing datasets. It also provides detailed information related to each tncRNA entry viz. tncRNA type, tRNA information, position on tRNA, strand, sequence, length, read count, RPM and modification site." ;
+    sc:featureList edam:operation_0464,
+        edam:operation_2929,
+        edam:operation_3792 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "tncRNAs" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <http://14.139.61.8/tncRNA/manual.php> ;
+    sc:url "http://nipgr.ac.in/tncRNA" .
+
 <https://bio.tools/tnet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3293,
         edam:topic_3305,
@@ -472224,8 +502720,21 @@ Transposon-sequencing (TnSeq) and genome-scale constraint-based metabolic modell
     sc:softwareHelp <https://github.com/sauravdhr/tnet_python/blob/master/TNet_Manual.pdf> ;
     sc:url "https://compbio.engr.uconn.edu/software/TNet/" .
 
+<https://bio.tools/tnfepitope> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:description "A webserver for prediction of TNF inducing epitopes." ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "tnfepitope" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/tnfepitope/index.php> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/tnfepitope/index.php" .
+
 <https://bio.tools/tnm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0176,
@@ -472240,7 +502749,7 @@ Transposon-sequencing (TnSeq) and genome-scale constraint-based metabolic modell
     sc:url "http://ub.cbm.uam.es/software/tnm.php" .
 
 <https://bio.tools/tnmplot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3170,
         edam:topic_3295,
@@ -472261,7 +502770,7 @@ differential gene expression analysis in Tumor, Normal and Metastatic tissues.""
         "Áron Bartha" .
 
 <https://bio.tools/tnrs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API" ;
     sc:applicationSubCategory edam:topic_3293 ;
     sc:citation <https://doi.org/10.1186/1471-2105-14-16> ;
@@ -472275,7 +502784,7 @@ differential gene expression analysis in Tumor, Normal and Metastatic tissues.""
     sc:url "http://tnrs.iplantcollaborative.org/about.html#api" .
 
 <https://bio.tools/tnt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0622 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btw210> ;
@@ -472292,7 +502801,7 @@ differential gene expression analysis in Tumor, Normal and Metastatic tissues.""
     biotools:primaryContact "Jialin Ma" .
 
 <https://bio.tools/toa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0769,
         edam:topic_0780,
@@ -472315,7 +502824,7 @@ TOA aims to establish workflows geared towards plant species that automate the e
     sc:url "https://github.com/GGFHF/TOA/" .
 
 <https://bio.tools/toast-alignment> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0194,
         edam:topic_0780,
@@ -472344,7 +502853,7 @@ With over 30,000 species, it is an understatement to say that there is much to d
     sc:url "https://carolinafishes.github.io/software/TOAST/" .
 
 <https://bio.tools/tobrfv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0780,
         edam:topic_3170,
@@ -472361,7 +502870,7 @@ With over 30,000 species, it is an understatement to say that there is much to d
     sc:url "https://nextstrain.nrcnvwa.nl/ToBRFV/20191231" .
 
 <https://bio.tools/toehold> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0632,
         edam:topic_0749,
@@ -472377,8 +502886,29 @@ With over 30,000 species, it is an understatement to say that there is much to d
     sc:softwareHelp <https://yiplab.cse.cuhk.edu.hk/toehold/faq.php> ;
     sc:url "https://yiplab.cse.cuhk.edu.hk/toehold/" .
 
+<https://bio.tools/toeholder> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0780,
+        edam:topic_3125,
+        edam:topic_3512,
+        edam:topic_3895 ;
+    sc:citation <https://doi.org/10.1101/2021.11.09.467922> ;
+    sc:description "Toeholder is a tool that can efficiently design toehold riboswitches for the detection of a target gene." ;
+    sc:featureList edam:operation_0479,
+        edam:operation_2428,
+        edam:operation_2476 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "Toeholder" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/igem-ulaval/toeholder" .
+
 <https://bio.tools/toffee> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -472396,7 +502926,7 @@ With over 30,000 species, it is an understatement to say that there is much to d
     sc:url "https://bitbucket.org/cmriprocan/toffee" .
 
 <https://bio.tools/tofistac> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -472415,7 +502945,7 @@ With over 30,000 species, it is an understatement to say that there is much to d
     biotools:primaryContact "Dariya Malyarenko" .
 
 <https://bio.tools/tofsims> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3047,
@@ -472436,8 +502966,30 @@ With over 30,000 species, it is an understatement to say that there is much to d
     sc:url "http://bioconductor.org/packages/release/bioc/html/tofsims.html" ;
     biotools:primaryContact "Lorenz Gerber" .
 
+<https://bio.tools/tofu> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0769,
+        edam:topic_3385,
+        edam:topic_3452 ;
+    sc:citation <https://doi.org/10.1107/S160057752200282X>,
+        "pmcid:PMC9070706",
+        "pubmed:35511025" ;
+    sc:description "A fast, versatile and user-friendly image processing toolkit for computed tomography." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_2422,
+        edam:operation_3443,
+        edam:operation_3454 ;
+    sc:isAccessibleForFree true ;
+    sc:license "LGPL-3.0" ;
+    sc:name "tofu" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/ufo-kit/tofu" .
+
 <https://bio.tools/toggle> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3168 ;
@@ -472452,8 +503004,38 @@ With over 30,000 species, it is an understatement to say that there is much to d
     sc:url "https://github.com/SouthGreenPlatform/TOGGLE" ;
     biotools:primaryContact "Support" .
 
+<https://bio.tools/togoid> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2610" ;
+            sc:name "Ensembl ID" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2291" ;
+            sc:name "UniProt ID" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0089,
+        edam:topic_0203,
+        edam:topic_0736,
+        edam:topic_3068,
+        edam:topic_3277 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC491>,
+        "pubmed:35801937" ;
+    sc:description "An exploratory ID converter to bridge biological datasets." ;
+    sc:featureList edam:operation_0250,
+        edam:operation_1777,
+        edam:operation_3197,
+        edam:operation_3282 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "TogoID" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://togoid.dbcls.jp/" .
+
 <https://bio.tools/togotable> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -472477,7 +503059,7 @@ With over 30,000 species, it is an understatement to say that there is much to d
     biotools:primaryContact "Contact Form" .
 
 <https://bio.tools/togows> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0781 ;
@@ -472492,7 +503074,7 @@ With over 30,000 species, it is an understatement to say that there is much to d
     sc:url "http://togows.dbcls.jp/site/en/soap.html" .
 
 <https://bio.tools/tom> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0611,
         edam:topic_1317 ;
@@ -472509,18 +503091,17 @@ With over 30,000 species, it is an understatement to say that there is much to d
 
 <https://bio.tools/tomahaqcompanion> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2974" ;
-            sc:name "Protein sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_2974" ],
+            sc:additionalType "http://edamontology.org/data_2974" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Protein sequence (raw)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3712" ;
+            sc:name "Mass spectrometry spectra" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121 ;
     sc:citation <https://doi.org/10.1021/acs.jproteome.8b00767>,
@@ -472536,7 +503117,7 @@ With over 30,000 species, it is an understatement to say that there is much to d
     sc:url "https://github.com/CMRose3355/TomahaqCompanionProgram" .
 
 <https://bio.tools/tome> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -472559,7 +503140,7 @@ With over 30,000 species, it is an understatement to say that there is much to d
     biotools:primaryContact "@TOME team" .
 
 <https://bio.tools/tomobox> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -472575,7 +503156,7 @@ With over 30,000 species, it is an understatement to say that there is much to d
     biotools:primaryContact <https://orcid.org/0000-0001-9114-754X> .
 
 <https://bio.tools/tomoj> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0611,
         edam:topic_3382,
@@ -472594,7 +503175,7 @@ With over 30,000 species, it is an understatement to say that there is much to d
     sc:url "https://sourceforge.net/projects/tomoj/" .
 
 <https://bio.tools/tomominer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3452 ;
     sc:citation <https://doi.org/10.1016/j.str.2017.04.016>,
@@ -472609,7 +503190,7 @@ With over 30,000 species, it is an understatement to say that there is much to d
     sc:url "http://web.cmb.usc.edu/people/alber/Software/tomominer/" .
 
 <https://bio.tools/tomomqa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3393,
         edam:topic_3452,
         edam:topic_3500 ;
@@ -472623,7 +503204,7 @@ TomoMQA is written in MATLAB and contains three steps for analysis: (a) open the
     sc:url "http://www.tomomqa.com/" .
 
 <https://bio.tools/tomophantom> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3384,
         edam:topic_3452 ;
@@ -472641,7 +503222,7 @@ TomoMQA is written in MATLAB and contains three steps for analysis: (a) open the
     biotools:primaryContact "Daniil Kazantsev" .
 
 <https://bio.tools/toner> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0659,
@@ -472658,8 +503239,22 @@ TomoMQA is written in MATLAB and contains three steps for analysis: (a) open the
     sc:url "http://www4a.biotec.or.th/GI/tools/toner" ;
     biotools:primaryContact "Jittima Piriyapongsa" .
 
+<https://bio.tools/tonkaz> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0769 ;
+    sc:description "CLI tool to verify workflow reproducibility." ;
+    sc:license "Apache-2.0" ;
+    sc:name "Tonkaz" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://github.com/sapporo-wes/tonkaz/blob/main/README.md> ;
+    sc:softwareVersion "0.2.3" ;
+    sc:url "https://github.com/sapporo-wes/tonkaz" .
+
 <https://bio.tools/tool_recommender_system_in_galaxy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_3316,
         edam:topic_3474 ;
@@ -472671,21 +503266,21 @@ TomoMQA is written in MATLAB and contains three steps for analysis: (a) open the
     sc:url "https://github.com/anuprulez/galaxy_tool_recommendation" .
 
 <https://bio.tools/tool_recommender_system_in_galaxy_using_deep_learning> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "A model is developed to recommend tools, by analysing workflows composed by researchers on the European Galaxy server, using a deep learning approach. The model is used to recommend tools in Galaxy." ;
     sc:name "Tool recommender system in Galaxy using deep learning" ;
     sc:url "https://github.com/anuprulez/galaxy_tool_recommendation" .
 
 <https://bio.tools/toolbox-romano-et-al> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3424" ;
-            sc:name "Raw image" ;
-            sc:sameAs "http://edamontology.org/data_3424" ] ;
+            sc:additionalType "http://edamontology.org/data_3424" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Raw image" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Pathway or network" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0602,
@@ -472705,10 +503300,10 @@ TomoMQA is written in MATLAB and contains three steps for analysis: (a) open the
 
 <https://bio.tools/tooldog> a sc:SoftwareApplication ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3750" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0091 ;
@@ -472728,7 +503323,7 @@ TomoMQA is written in MATLAB and contains three steps for analysis: (a) open the
         "Kenzo-Hugo Hillion" .
 
 <https://bio.tools/tooljig> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0769,
@@ -472744,7 +503339,7 @@ TomoMQA is written in MATLAB and contains three steps for analysis: (a) open the
     biotools:primaryContact <https://orcid.org/0000-0003-2001-5640> .
 
 <https://bio.tools/toolkit-pulsatile-flow-arteries> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_3382,
         edam:topic_3408 ;
@@ -472759,7 +503354,7 @@ TomoMQA is written in MATLAB and contains three steps for analysis: (a) open the
     biotools:primaryContact "Alip" .
 
 <https://bio.tools/toolkits-monte-carlo-dose-simulation-visualization> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:description "A set of Matlab functions which are designed to help clinicians and researchers use GEANT4 or TOPAS" ;
     sc:isAccessibleForFree true ;
@@ -472773,30 +503368,30 @@ TomoMQA is written in MATLAB and contains three steps for analysis: (a) open the
 
 <https://bio.tools/tools> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1274" ;
-            sc:name "Map" ;
-            sc:sameAs "http://edamontology.org/data_1274" ],
+            sc:additionalType "http://edamontology.org/data_1274" ;
+            sc:encodingFormat "http://edamontology.org/format_2376" ;
+            sc:name "Map" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1600" ;
-            sc:name "Codon usage bias plot" ;
-            sc:sameAs "http://edamontology.org/data_1600" ],
+            sc:additionalType "http://edamontology.org/data_3108" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Experimental measurement" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2082" ;
-            sc:name "Matrix" ;
-            sc:sameAs "http://edamontology.org/data_2082" ],
+            sc:additionalType "http://edamontology.org/data_2082" ;
+            sc:encodingFormat "http://edamontology.org/format_3750" ;
+            sc:name "Matrix" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3108" ;
-            sc:name "Experimental measurement" ;
-            sc:sameAs "http://edamontology.org/data_3108" ] ;
+            sc:additionalType "http://edamontology.org/data_1600" ;
+            sc:encodingFormat "http://edamontology.org/format_3773" ;
+            sc:name "Codon usage bias plot" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1394" ;
-            sc:name "Alignment score or penalty" ;
-            sc:sameAs "http://edamontology.org/data_1394" ],
+            sc:additionalType "http://edamontology.org/data_1394" ;
+            sc:encodingFormat "http://edamontology.org/format_2350" ;
+            sc:name "Alignment score or penalty" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1347" ;
-            sc:name "Dirichlet distribution" ;
-            sc:sameAs "http://edamontology.org/data_1347" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1347" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Dirichlet distribution" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "toolstools" ;
     sc:featureList edam:operation_2928,
         edam:operation_2945 ;
@@ -472804,7 +503399,7 @@ TomoMQA is written in MATLAB and contains three steps for analysis: (a) open the
     sc:url "https://www.autohome.com.cn/beijing/#pvareaid=3311664" .
 
 <https://bio.tools/tools-taggi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_0632,
         edam:topic_3168,
@@ -472825,7 +503420,7 @@ You need to have Google Chrome or Safari browser only.""" ;
     sc:url "http://baddna.uga.edu/tools-taggi.html" .
 
 <https://bio.tools/tools4msp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_0769,
@@ -472843,7 +503438,7 @@ You need to have Google Chrome or Safari browser only.""" ;
     biotools:primaryContact "Stefano Menegon" .
 
 <https://bio.tools/toomanycells> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3170,
         edam:topic_3308,
@@ -472865,8 +503460,32 @@ An R wrapper for using 'TooManyCells', a command line program for clustering, vi
     sc:name "TooManyCells" ;
     sc:url "https://github.com/faryabib/too-many-cells" .
 
+<https://bio.tools/top-ld> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_0199,
+        edam:topic_3337,
+        edam:topic_3577,
+        edam:topic_3673 ;
+    sc:citation <https://doi.org/10.1016/J.AJHG.2022.04.006>,
+        "pmcid:PMC9247832",
+        "pubmed:35504290" ;
+    sc:description "A tool to explore linkage disequilibrium with TOPMed whole-genome sequence data." ;
+    sc:featureList edam:operation_0487,
+        edam:operation_0488,
+        edam:operation_3196,
+        edam:operation_3226 ;
+    sc:isAccessibleForFree true ;
+    sc:name "TOP-LD" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://github.com/linnabrown/topld_api> ;
+    sc:url "http://topld.genetics.unc.edu/" .
+
 <https://bio.tools/topaln> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3382,
         edam:topic_3383,
@@ -472883,22 +503502,22 @@ An R wrapper for using 'TooManyCells', a command line program for clustering, vi
 
 <https://bio.tools/topaseq> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ],
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:encodingFormat "http://edamontology.org/format_2058" ;
+            sc:name "Pathway or network" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Gene expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ] ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_2058" ;
+            sc:name "Gene expression data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ],
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Plot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0951" ;
-            sc:name "Statistical estimate score" ;
-            sc:sameAs "http://edamontology.org/data_0951" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0951" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Statistical estimate score" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0602,
@@ -472921,14 +503540,12 @@ An R wrapper for using 'TooManyCells', a command line program for clustering, vi
 
 <https://bio.tools/topcons> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:name "Protein sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:name "Protein features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1093/nar/gkv485> ;
@@ -472945,38 +503562,34 @@ An R wrapper for using 'TooManyCells', a command line program for clustering, vi
 
 <https://bio.tools/topdb> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2789" ;
-            sc:name "Protein ID (TopDB)" ;
-            sc:sameAs "http://edamontology.org/data_2789" ],
+            sc:additionalType "http://edamontology.org/data_2789" ;
+            sc:name "Protein ID (TopDB)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2789" ;
-            sc:name "Protein ID (TopDB)" ;
-            sc:sameAs "http://edamontology.org/data_2789" ],
+            sc:additionalType "http://edamontology.org/data_2789" ;
+            sc:name "Protein ID (TopDB)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2789" ;
-            sc:name "Protein ID (TopDB)" ;
-            sc:sameAs "http://edamontology.org/data_2789" ],
+            sc:additionalType "http://edamontology.org/data_2789" ;
+            sc:name "Protein ID (TopDB)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2789" ;
-            sc:name "Protein ID (TopDB)" ;
-            sc:sameAs "http://edamontology.org/data_2789" ] ;
+            sc:additionalType "http://edamontology.org/data_2789" ;
+            sc:name "Protein ID (TopDB)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ],
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Protein features" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ],
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Protein features" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ],
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Protein features" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Protein features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0820 ;
     sc:citation <https://doi.org/10.1093/nar/gkm751> ;
@@ -472990,7 +503603,7 @@ An R wrapper for using 'TooManyCells', a command line program for clustering, vi
     sc:url "http://toPDB.enzim.hu" .
 
 <https://bio.tools/topdownr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -473007,8 +503620,29 @@ An R wrapper for using 'TooManyCells', a command line program for clustering, vi
     sc:url "http://bioconductor.org/packages/release/bioc/html/topdownr.html" ;
     biotools:primaryContact "Sebastian Gibb" .
 
+<https://bio.tools/topex> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0218,
+        edam:topic_0634,
+        edam:topic_3473,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1093/DATABASE/BAAC063>,
+        "pmcid:PMC9369716",
+        "pubmed:35951425" ;
+    sc:description "TopEx is a natural language processing application developed to facilitate the exploration of topics and key words in a set of texts through a user interface that requires no programming or natural language processing knowledge, thus enhancing the ability of nontechnical researchers to explore and analyze textual data." ;
+    sc:featureList edam:operation_0306,
+        edam:operation_0337,
+        edam:operation_3432 ;
+    sc:isAccessibleForFree true ;
+    sc:name "TopEx" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://topex.cctr.vcu.edu" .
+
 <https://bio.tools/topfind> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0121,
@@ -473030,7 +503664,7 @@ An R wrapper for using 'TooManyCells', a command line program for clustering, vi
     biotools:primaryContact "TopFIND team" .
 
 <https://bio.tools/topgo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0089,
@@ -473052,28 +503686,51 @@ An R wrapper for using 'TooManyCells', a command line program for clustering, vi
     sc:url "http://bioconductor.org/packages/release/bioc/html/topGO.html" ;
     biotools:primaryContact "Adrian Alexa" .
 
+<https://bio.tools/tophap> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0084,
+        edam:topic_0196,
+        edam:topic_0199,
+        edam:topic_3168,
+        edam:topic_3943 ;
+    sc:citation <https://doi.org/10.1101/2021.12.13.472454>,
+        "pmcid:PMC8687460",
+        "pubmed:34931186" ;
+    sc:description "Rapid inference of key phylogenetic structures from common haplotypes in large genome collections with limited diversity." ;
+    sc:featureList edam:operation_0323,
+        edam:operation_0487,
+        edam:operation_3227,
+        edam:operation_3745 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "TopHap" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/SayakaMiura/TopHap" .
+
 <https://bio.tools/tophat> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1234" ;
-            sc:name "Sequence set (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1234" ],
+            sc:additionalType "http://edamontology.org/data_1234" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Sequence set (nucleic acid)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2749" ;
-            sc:name "Genome identifier" ;
-            sc:sameAs "http://edamontology.org/data_2749" ] ;
+            sc:additionalType "http://edamontology.org/data_2749" ;
+            sc:name "Genome identifier" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ],
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_3003" ;
+            sc:name "Annotation track" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
+            sc:name "Sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_3003" ;
+            sc:name "Annotation track" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3170,
@@ -473094,7 +503751,7 @@ An R wrapper for using 'TooManyCells', a command line program for clustering, vi
     biotools:primaryContact "Daehwan Kim" .
 
 <https://bio.tools/tophat-fusion> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0114,
@@ -473113,7 +503770,7 @@ An R wrapper for using 'TooManyCells', a command line program for clustering, vi
     biotools:primaryContact "Daehwan Kim" .
 
 <https://bio.tools/tophat-recondition> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3307 ;
     sc:citation <https://doi.org/10.1186/s12859-016-1058-x> ;
@@ -473125,54 +503782,54 @@ An R wrapper for using 'TooManyCells', a command line program for clustering, vi
 
 <https://bio.tools/tophat2> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1932" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2306" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1932" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1932" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0924" ;
-            sc:name "Sequence trace" ;
-            sc:sameAs "http://edamontology.org/data_0924" ],
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_3003" ;
+            sc:name "Annotation track" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ],
+            sc:additionalType "http://edamontology.org/data_0924" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Sequence trace" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ],
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_3003" ;
+            sc:name "Annotation track" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_3003" ;
+            sc:name "Annotation track" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3170 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btp120>,
@@ -473200,8 +503857,24 @@ An R wrapper for using 'TooManyCells', a command line program for clustering, vi
     sc:url "http://ccb.jhu.edu/software/tophat/index.shtml" ;
     biotools:primaryContact "Galaxy Support Team" .
 
+<https://bio.tools/topicalpdb> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:citation <https://doi.org/10.1371/journal.pone.0190134>,
+        "pmcid:PMC5809007",
+        "pubmed:29432422" ;
+    sc:description "TopicalPdb: Database of Topically Administered Peptide." ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "topicalpdb" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/topicalpdb/> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/topicalpdb/" .
+
 <https://bio.tools/topicnet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0602,
         edam:topic_0749,
@@ -473220,7 +503893,7 @@ Topicnet uses a method called TopicNet that applies latent Dirichlet allocation
     sc:url "https://github.com/gersteinlab/topicnet" .
 
 <https://bio.tools/topino> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_2258,
         edam:topic_3382 ;
@@ -473235,7 +503908,7 @@ Topicnet uses a method called TopicNet that applies latent Dirichlet allocation
     biotools:primaryContact "Sergey N. Krylov" .
 
 <https://bio.tools/topmatch> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0081,
@@ -473258,7 +503931,7 @@ Topicnet uses a method called TopicNet that applies latent Dirichlet allocation
     biotools:primaryContact "TopMatch Support" .
 
 <https://bio.tools/topmodel> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0130,
@@ -473278,7 +503951,7 @@ Knowledge of protein structures is essential to understand proteins' functions,
     sc:url "https://cpclab.uni-duesseldorf.de/topsuite/standalone_download.html" .
 
 <https://bio.tools/topo2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0820 ;
@@ -473290,7 +503963,7 @@ Knowledge of protein structures is essential to understand proteins' functions,
     sc:url "http://www.sacs.ucsf.edu/TOPO2/" .
 
 <https://bio.tools/topodb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3303,
         edam:topic_3386,
@@ -473311,7 +503984,7 @@ Log in as the admin user that was created as part of the sample data set: email:
     sc:url "https://github.com/UCSF-MS-DCC/TopoDB" .
 
 <https://bio.tools/topofilter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0621,
         edam:topic_2259,
@@ -473330,7 +504003,7 @@ Topological filtering method: model space exploration for ODE models based on ap
     sc:url "https://gitlab.com/csb.ethz/TopoFilter" .
 
 <https://bio.tools/topograph> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3068,
         edam:topic_3360,
@@ -473347,14 +504020,14 @@ An oncologist-led effort in cataloguing literature evidence for streamlining the
     sc:url "https://topograph.info/" .
 
 <https://bio.tools/topogsa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0128,
         edam:topic_0602,
-        edam:topic_2229,
-        edam:topic_3557 ;
+        edam:topic_2229 ;
     sc:citation "pubmed:20335277" ;
+    sc:contributor "Natalio Krasnogor" ;
     sc:description "Web-application dedicated to the computation and visualization of network topological properties for gene and protein sets in molecular interaction networks. Different topological characteristics, such as the centrality of nodes in the network or their tendency to form clusters, can be computed and compared with those of known cellular pathways and processes (Gene Ontology, BioCarta, KEGG, among others)." ;
     sc:featureList edam:operation_0276,
         edam:operation_0277,
@@ -473367,11 +504040,10 @@ An oncologist-led effort in cataloguing literature evidence for streamlining the
         "Windows" ;
     sc:softwareHelp <http://topogsa.org/tutorialhtml.php> ;
     sc:url "http://www.topogsa.net" ;
-    biotools:primaryContact "Alfonso Valencia",
-        "Natalio Krasnogor" .
+    biotools:primaryContact <https://orcid.org/0000-0003-3977-7469> .
 
 <https://bio.tools/topolink> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0166,
@@ -473390,7 +504062,7 @@ An oncologist-led effort in cataloguing literature evidence for streamlining the
     biotools:primaryContact "Leandro Martinez" .
 
 <https://bio.tools/topologygsa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0085 ;
     sc:citation <https://doi.org/10.1186/1752-0509-4-121>,
@@ -473410,7 +504082,7 @@ An oncologist-led effort in cataloguing literature evidence for streamlining the
     biotools:primaryContact "Chiara Romualdi" .
 
 <https://bio.tools/topoly> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_0736,
         edam:topic_3306 ;
@@ -473425,7 +504097,7 @@ An oncologist-led effort in cataloguing literature evidence for streamlining the
     sc:url "https://topoly.cent.uw.edu.pl" .
 
 <https://bio.tools/topostats> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3047,
         edam:topic_3382 ;
@@ -473442,8 +504114,30 @@ The algorithm searches recursively for files within a user-defined directory. Th
     sc:name "TopoStats" ;
     sc:url "https://github.com/afmstats/TopoStats" .
 
+<https://bio.tools/topp> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0659,
+        edam:topic_2640,
+        edam:topic_3512,
+        edam:topic_3577,
+        edam:topic_3697 ;
+    sc:citation <https://doi.org/10.1016/J.ISCI.2022.104190>,
+        "pmcid:PMC9035726",
+        "pubmed:35479398" ;
+    sc:description "Tumor online prognostic analysis platform for prognostic feature selection and clinical patient subgroup selection." ;
+    sc:featureList edam:operation_1781,
+        edam:operation_3223,
+        edam:operation_3503 ;
+    sc:isAccessibleForFree true ;
+    sc:name "ToPP" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://www.biostatistics.online/topp/index.php" .
+
 <https://bio.tools/toppcluster> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0114,
         edam:topic_0602,
@@ -473464,7 +504158,7 @@ The algorithm searches recursively for files within a user-defined directory. Th
     biotools:primaryContact "Anil Jegga" .
 
 <https://bio.tools/toppgene_suite> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0203,
@@ -473489,22 +504183,22 @@ The algorithm searches recursively for files within a user-defined directory. Th
 
 <https://bio.tools/toppic> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ],
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3245" ;
+            sc:name "Mass spectrometry spectra" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2886" ;
-            sc:name "Protein sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2886" ],
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Peptide identification" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2886" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Protein sequence record" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -473529,7 +504223,7 @@ The algorithm searches recursively for files within a user-defined directory. Th
     biotools:primaryContact "Xiaowen Liu" .
 
 <https://bio.tools/toppmir> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0602,
@@ -473554,14 +504248,12 @@ The algorithm searches recursively for files within a user-defined directory. Th
 
 <https://bio.tools/toppr> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1096" ;
-            sc:name "Sequence accession (protein)" ;
-            sc:sameAs "http://edamontology.org/data_1096" ] ;
+            sc:additionalType "http://edamontology.org/data_1096" ;
+            sc:name "Sequence accession (protein)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1238" ;
-            sc:name "Proteolytic digest" ;
-            sc:sameAs "http://edamontology.org/data_1238" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1238" ;
+            sc:name "Proteolytic digest" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0121 ;
     sc:citation <https://doi.org/10.1093/nar/gks998> ;
@@ -473572,8 +504264,33 @@ The algorithm searches recursively for files within a user-defined directory. Th
     sc:softwareVersion "1" ;
     sc:url "http://iomics.ugent.be/toppr/home.html" .
 
+<https://bio.tools/topproperty> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0082,
+        edam:topic_0736,
+        edam:topic_0820,
+        edam:topic_3474,
+        edam:topic_3542 ;
+    sc:citation <https://doi.org/10.1021/ACS.JCTC.1C00685>,
+        "pubmed:34663069" ;
+    sc:description "TopProperty is a meta-predictor that combines outputs of 27 primary predictors using two ensembles of deep neural networks to predict secondary structure, solvent accessibility, transmembrane topology and membrane exposure for both transmembrane and globular proteins. TopProperty is trained on datasets without bias towards a high number of sequence homologs and the predictions are significantly better than all primary predictors on all quality metrics. TopProperty eliminates the need for protein type- or property-tailored tools, especifically for transmembrane proteins." ;
+    sc:featureList edam:operation_0269,
+        edam:operation_0303,
+        edam:operation_0408,
+        edam:operation_0477,
+        edam:operation_3927 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "TopProperty" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://cpclab.uni-duesseldorf.de/topsuite/documentation_tp.html> ;
+    sc:url "https://cpclab.uni-duesseldorf.de/topsuite/topproperty.php" .
+
 <https://bio.tools/tops> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2814 ;
     sc:citation <https://doi.org/10.1093/nar/gkh060> ;
@@ -473584,7 +504301,7 @@ The algorithm searches recursively for files within a user-defined directory. Th
     sc:url "http://www.bioinformatics.leeds.ac.uk/TOPS/" .
 
 <https://bio.tools/topsan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0122,
@@ -473604,7 +504321,7 @@ The algorithm searches recursively for files within a user-defined directory. Th
     biotools:primaryContact "Adam Godzik" .
 
 <https://bio.tools/topsearch> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121 ;
     sc:description "TopSearch is a new powerful gateway to protein structures and their structural relationships. Given a query structure the search engine instantly returns a list of known protein structures sorted by structural similarity. TopSearch operates on three structural levels: chains, biological assemblies and quaternary structures, and asymmetric units." ;
@@ -473618,7 +504335,7 @@ The algorithm searches recursively for files within a user-defined directory. Th
     biotools:primaryContact "TopSearch Support" .
 
 <https://bio.tools/topspot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0219,
         edam:topic_2814,
@@ -473634,7 +504351,7 @@ The algorithm searches recursively for files within a user-defined directory. Th
     sc:url "http://web.mpiib-berlin.mpg.de/pdbs/2d-page/downloads.html" .
 
 <https://bio.tools/topsuite> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
@@ -473652,8 +504369,31 @@ The algorithm searches recursively for files within a user-defined directory. Th
     sc:name "TopSuite" ;
     sc:url "https://cpclab.uni-duesseldorf.de/topsuite/" .
 
+<https://bio.tools/topsy-turvy> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0128,
+        edam:topic_0621,
+        edam:topic_3957 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC258>,
+        "pmcid:PMC9235477",
+        "pubmed:35758793" ;
+    sc:description "Integrating a global view into sequence-based PPI prediction." ;
+    sc:featureList edam:operation_2464,
+        edam:operation_2492,
+        edam:operation_3094,
+        edam:operation_3454 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "Topsy-Turvy" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://d-script.readthedocs.io/en/main/index.html> ;
+    sc:url "https://topsyturvy.csail.mit.edu" .
+
 <https://bio.tools/torchani> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0176,
         edam:topic_0593,
         edam:topic_0602,
@@ -473669,7 +504409,7 @@ The algorithm searches recursively for files within a user-defined directory. Th
     sc:url "http://aiqm.github.io/torchani/" .
 
 <https://bio.tools/torchio> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3384,
         edam:topic_3444,
@@ -473692,7 +504432,7 @@ The algorithm searches recursively for files within a user-defined directory. Th
     sc:url "http://torchio.rtfd.io/" .
 
 <https://bio.tools/torchmd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0176,
         edam:topic_0736,
@@ -473711,7 +504451,7 @@ The algorithm searches recursively for files within a user-defined directory. Th
     biotools:primaryContact <https://orcid.org/0000-0003-3913-4877> .
 
 <https://bio.tools/torque> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0128,
@@ -473734,7 +504474,7 @@ The algorithm searches recursively for files within a user-defined directory. Th
     biotools:primaryContact "Sharon Bruckner" .
 
 <https://bio.tools/torquemada> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0621 ;
     sc:citation <https://doi.org/10.1101/2020.11.15.363259> ;
@@ -473748,7 +504488,7 @@ TQMD is a tool which downloads, stores and produces lists of dereplicated prokar
     sc:url "https://bitbucket.org/phylogeno/tqmd" .
 
 <https://bio.tools/torrentsuite> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "Torrent Suite Software and Torrent Server provide simple, automated sequencing data analysis and storage solutions" ;
     sc:featureList edam:operation_0292,
         edam:operation_3227 ;
@@ -473756,7 +504496,7 @@ TQMD is a tool which downloads, stores and produces lists of dereplicated prokar
     sc:url "https://github.com/iontorrent/TS" .
 
 <https://bio.tools/torsiflex> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3047,
@@ -473771,7 +504511,7 @@ TQMD is a tool which downloads, stores and produces lists of dereplicated prokar
     biotools:primaryContact <https://orcid.org/0000-0002-6468-1592> .
 
 <https://bio.tools/torsionnet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0209,
         edam:topic_3047,
@@ -473788,7 +504528,7 @@ TQMD is a tool which downloads, stores and produces lists of dereplicated prokar
     sc:url "https://github.com/PfizerRD/TorsionNet" .
 
 <https://bio.tools/torte> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3304,
@@ -473806,7 +504546,7 @@ TQMD is a tool which downloads, stores and produces lists of dereplicated prokar
     sc:url "https://github.com/tne-lab/TORTE" .
 
 <https://bio.tools/totalVI> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0108,
@@ -473828,13 +504568,8 @@ TQMD is a tool which downloads, stores and produces lists of dereplicated prokar
     sc:name "Total Variational Inference" ;
     sc:url "https://scvi-tools.org/" .
 
-<https://bio.tools/total_rna_sequencing> a sc:SoftwareApplication ;
-    sc:description "CD genomics combines proven ribosomal reduction library preparation chemistries and illumina NGS technology into a single, streamlined protocol. Ribo-Zero ribosomal RNA reduction chemistry minimizes ribosomal contamination and maximizes the percentage of uniquely mapped reads. With the consistent robust performance, total RNA-seq covers both mRNA and a broad range of ncRNA species of interest, including long noncoding RNA (lncRNA), small nuclear (snRNA), small nucleolar (snoRNA), and other RNA species." ;
-    sc:name "Total RNA Sequencing" ;
-    sc:url "https://www.cd-genomics.com/total-rna-sequencing.html" .
-
 <https://bio.tools/totalview> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3316 ;
     sc:author "Perforce Software, Inc." ;
@@ -473851,7 +504586,7 @@ TQMD is a tool which downloads, stores and produces lists of dereplicated prokar
     biotools:primaryContact "Perforce Software, Inc." .
 
 <https://bio.tools/totem> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_3053 ;
@@ -473869,8 +504604,30 @@ TQMD is a tool which downloads, stores and produces lists of dereplicated prokar
     sc:url "https://totem.software/login/?backlink=iplpf&_fid=t22e" ;
     biotools:primaryContact "Nikola Tom" .
 
+<https://bio.tools/totoro> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0602,
+        edam:topic_3172,
+        edam:topic_3407 ;
+    sc:citation <https://doi.org/10.3389/FGENE.2022.815476>,
+        "pmcid:PMC8905348",
+        "pubmed:35281848" ;
+    sc:description "Identifying Active Reactions During the Transient State for Metabolic Perturbations." ;
+    sc:featureList edam:operation_3660,
+        edam:operation_3799,
+        edam:operation_3929 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "Totoro" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://gitlab.inria.fr/erable/totoro" .
+
 <https://bio.tools/toucan_2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0160,
@@ -473890,8 +504647,37 @@ TQMD is a tool which downloads, stores and produces lists of dereplicated prokar
     sc:url "http://www.esat.kuleuven.ac.be/~saerts/software/toucan.php" ;
     biotools:primaryContact "Aerts S." .
 
+<https://bio.tools/tourmaline> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:description "Tourmaline is an amplicon sequence processing workflow for Illumina sequence data that uses QIIME 2 and the software packages it wraps. Tourmaline manages commands, inputs, and outputs using the Snakemake workflow management system." ;
+    sc:license "BSD-3-Clause" ;
+    sc:name "Tourmaline" ;
+    sc:url "https://github.com/aomlomics/tourmaline" .
+
+<https://bio.tools/tox-gan> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_2840,
+        edam:topic_3360,
+        edam:topic_3474,
+        edam:topic_3500,
+        edam:topic_3679 ;
+    sc:citation <https://doi.org/10.1093/TOXSCI/KFAB157>,
+        "pubmed:34971401" ;
+    sc:description "An Artificial Intelligence Approach Alternative to Animal Studies." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_0315,
+        edam:operation_3435 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "Tox-GAN" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/XC-NCTR/Tox-GAN" .
+
 <https://bio.tools/tox21bodymap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0203,
@@ -473909,7 +504695,7 @@ TQMD is a tool which downloads, stores and produces lists of dereplicated prokar
     sc:url "https://sandbox.ntp.niehs.nih.gov/bodymap/" .
 
 <https://bio.tools/toxcodan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
         edam:topic_3170,
@@ -473928,8 +504714,34 @@ TQMD is a tool which downloads, stores and produces lists of dereplicated prokar
     sc:url "https://github.com/pedronachtigall/ToxCodAn" ;
     biotools:primaryContact "Pedro G Nachtigall" .
 
+<https://bio.tools/toxcsm> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1463" ;
+            sc:encodingFormat "http://edamontology.org/format_1196" ;
+            sc:name "Small molecule structure" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2301" ;
+            sc:name "SMILES string" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_3047,
+        edam:topic_3336,
+        edam:topic_3379,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1093/BIB/BBAC337>,
+        "pubmed:35998885" ;
+    sc:description "Comprehensive prediction of small molecule toxicity profiles." ;
+    sc:featureList edam:operation_2423 ;
+    sc:isAccessibleForFree true ;
+    sc:name "toxCSM" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://biosig.lab.uq.edu.au/toxcsm" .
+
 <https://bio.tools/toxdl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0634,
         edam:topic_0736,
@@ -473945,8 +504757,34 @@ TQMD is a tool which downloads, stores and produces lists of dereplicated prokar
     sc:name "ToxDL" ;
     sc:url "http://www.csbio.sjtu.edu.cn/bioinf/ToxDL/" .
 
+<https://bio.tools/toxibtl> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0082,
+        edam:topic_0121,
+        edam:topic_0154,
+        edam:topic_0634,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC006>,
+        "pubmed:34999757" ;
+    sc:description "A generic webserver for peptide toxicity prediction" ;
+    sc:featureList edam:operation_0267,
+        edam:operation_0278,
+        edam:operation_0303 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "ToxIBTL" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://server.wei-group.net/ToxIBTL" .
+
 <https://bio.tools/toxicodb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0203,
         edam:topic_0602,
@@ -473967,7 +504805,7 @@ A statistical analysis package for use exploring the relationship between toxici
     sc:url "http://toxicodb.ca" .
 
 <https://bio.tools/toxindb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0821,
         edam:topic_2258,
@@ -473990,16 +504828,65 @@ Example: Common name: Aflatoxin : CAS number: 65195-55-3: InChI key: JLWQFKMKUKQ
     sc:name "ToxinDB" ;
     sc:url "http://www.rxnfinder.org/toxindb/" .
 
+<https://bio.tools/toxinpred> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:citation <https://doi.org/10.1007/978-1-4939-2285-7_7>,
+        "pubmed:25555724" ;
+    sc:description "ToxinPred is an in silico method, which is developed to predict and design toxic/non-toxic peptides. This server is specifically developed for predicting toxicity of peptides or for designing peptides with desired toxicity." ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "toxinpred" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/toxinpred/index.html> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/toxinpred/index.html" .
+
+<https://bio.tools/toxinpred2> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0160,
+        edam:topic_2840,
+        edam:topic_3379,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1093/BIB/BBAC174>,
+        "pubmed:35595541" ;
+    sc:description "A webserver for designing and predicting toxic and non-toxic proteins." ;
+    sc:featureList edam:operation_0239,
+        edam:operation_3092,
+        edam:operation_4009 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "ToxinPred2" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://webs.iiitd.edu.in/raghava/toxinpred2/" .
+
+<https://bio.tools/toxipred> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:description "ToxiPred: A server for prediction of aqueous toxicity of small chemical molecules in T. pyriformis" ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "toxipred" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/toxipred/> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/toxipred/" .
+
 <https://bio.tools/toxodb> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2295" ;
-            sc:name "Gene ID" ;
-            sc:sameAs "http://edamontology.org/data_2295" ] ;
+            sc:additionalType "http://edamontology.org/data_2295" ;
+            sc:name "Gene ID" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0916" ;
-            sc:name "Gene report" ;
-            sc:sameAs "http://edamontology.org/data_0916" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0916" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Gene report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0621 ;
     sc:citation <https://doi.org/10.1093/nar/gkm981> ;
@@ -474013,7 +504900,7 @@ Example: Common name: Aflatoxin : CAS number: 65195-55-3: InChI key: JLWQFKMKUKQ
     sc:url "http://toxodb.org/toxo/" .
 
 <https://bio.tools/toxpanel> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0625,
@@ -474032,16 +504919,31 @@ ToxPanel is a web-based platform to calculate activation scores for liver and ki
     sc:name "ToxPanel" ;
     sc:url "https://toxpanel.bhsai.org" .
 
+<https://bio.tools/toxpigis_toolkit> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_0769,
+        edam:topic_2840 ;
+    sc:citation <https://doi.org/10.1101/2021.10.08.21264756> ;
+    sc:description "The ToxPi framework provides a method for transparently integrating and visualizing data across disparate information domains and is often used to determine risk values for the data being analyzed." ;
+    sc:featureList edam:operation_0337 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "ToxPiGIS Toolkit" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/Jonathon-Fleming/ToxPi-GIS" .
+
 <https://bio.tools/toxsign> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0850" ;
-            sc:name "Sequence set" ;
-            sc:sameAs "http://edamontology.org/data_0850" ] ;
+            sc:additionalType "http://edamontology.org/data_0850" ;
+            sc:name "Sequence set" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2080" ;
-            sc:name "Database search results" ;
-            sc:sameAs "http://edamontology.org/data_2080" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2080" ;
+            sc:name "Database search results" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_2840 ;
@@ -474055,8 +504957,30 @@ ToxPanel is a web-based platform to calculate activation scores for liver and ki
     sc:url "http://toxsign.genouest.org" ;
     biotools:primaryContact "Chalmel Frédéric" .
 
+<https://bio.tools/toxstar> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2301" ;
+            sc:name "SMILES string" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0634,
+        edam:topic_2840,
+        edam:topic_3172,
+        edam:topic_3297 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC490>,
+        "pubmed:35900148" ;
+    sc:description "ToxSTAR is a platform to predict human toxicity caused by drugs and chemicals through integration of biotechnology (BT) and information technology (IT)." ;
+    sc:featureList edam:operation_2423 ;
+    sc:isAccessibleForFree true ;
+    sc:name "ToxSTAR" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://toxstar.kitox.re.kr/" .
+
 <https://bio.tools/toxvec> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0154,
         edam:topic_3063,
@@ -474070,7 +504994,7 @@ Venom is a mixture of substances produced by a venomous organism aiming at preyi
     sc:url "https://github.com/meahmadi/ToxVec" .
 
 <https://bio.tools/tp-map> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0128,
@@ -474089,7 +505013,7 @@ Thermal Profiling Meltome Analysis Program.""" ;
     sc:url "https://www.gitlab.com/ChemBioHub/tpmap" .
 
 <https://bio.tools/tpms> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3293 ;
     sc:citation <https://doi.org/10.1186/1471-2105-14-109> ;
@@ -474102,7 +505026,7 @@ Thermal Profiling Meltome Analysis Program.""" ;
     sc:url "http://pbil.univ-lyon1.fr/software/tpms/" .
 
 <https://bio.tools/tpp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3336,
@@ -474123,8 +505047,59 @@ Thermal Profiling Meltome Analysis Program.""" ;
     sc:url "https://bioconductor.org/packages/TPP/" ;
     biotools:primaryContact "Dorothee Childs" .
 
+<https://bio.tools/tppred-atmv> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0077,
+        edam:topic_0082,
+        edam:topic_0154,
+        edam:topic_3373,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC200>,
+        "pubmed:35389426" ;
+    sc:description "Therapeutic peptides prediction by adaptive multi-view tensor learning model." ;
+    sc:featureList edam:operation_0475,
+        edam:operation_3092,
+        edam:operation_3937 ;
+    sc:isAccessibleForFree true ;
+    sc:license "BSD-2-Clause" ;
+    sc:name "TPpred-ATMV" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/cokeyk/TPpred-ATMV" .
+
+<https://bio.tools/tpriors> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0634,
+        edam:topic_2269 ;
+    sc:citation <https://doi.org/10.21203/RS.3.RS-1019762/V1> ;
+    sc:description "A tool for prior elicitation and obtaining posterior distributions of true disease prevalence." ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "tPRiors" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://doi.org/10.21203/RS.3.RS-1019762/V1" .
+
+<https://bio.tools/tps> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:citation <https://doi.org/10.1016/j.celrep.2018.08.085>,
+        "pmcid:PMC6295338",
+        "pubmed:30257219" ;
+    sc:description "TPS is a tool for combining time series global phosphoproteomic data and protein-protein interaction networks to reconstruct the vast signaling pathways that control post-translational modifications." ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "TPS" ;
+    sc:operatingSystem "Linux",
+        "Mac" ;
+    sc:url "https://github.com/koksal/tps" .
+
 <https://bio.tools/tpwshiny> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -474149,7 +505124,7 @@ Thermal Profiling Meltome Analysis Program.""" ;
     sc:url "https://brpnci.shinyapps.io/TPWshiny/" .
 
 <https://bio.tools/tpwy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2269 ;
     sc:description "tpWY (t-statistics, p-values, and Westfall and Young step-down method) consists of software to implement the methods illustrated by Dudoit et al. (2000) to compute unadjusted and adjusted p-values for the t-statistics derived from a collection of two-channel microarray experiments" ;
@@ -474163,7 +505138,7 @@ Thermal Profiling Meltome Analysis Program.""" ;
     biotools:primaryContact "Support" .
 
 <https://bio.tools/tqdist> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0084 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btu157> ;
@@ -474180,7 +505155,7 @@ Thermal Profiling Meltome Analysis Program.""" ;
     biotools:primaryContact "Christian N. S. Pedersen" .
 
 <https://bio.tools/trac> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0091,
         edam:topic_2885,
@@ -474197,7 +505172,7 @@ TRansfer Learning for Antibiotic Resistance Gene Classification (TRAC) is a neur
     sc:url "https://github.com/nafizh/TRAC" .
 
 <https://bio.tools/trace> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3173,
@@ -474218,7 +505193,7 @@ TRansfer Learning for Antibiotic Resistance Gene Classification (TRAC) is a neur
     biotools:primaryContact "Esti Yeger-Lotem" .
 
 <https://bio.tools/trace-rrbs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0654,
@@ -474234,7 +505209,7 @@ TRansfer Learning for Antibiotic Resistance Gene Classification (TRAC) is a neur
     sc:url "http://bioinformaticstools.mayo.edu/research/trace-rrbs/" .
 
 <https://bio.tools/tracembler> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:citation "pubmed:17490482" ;
@@ -474248,7 +505223,7 @@ TRansfer Learning for Antibiotic Resistance Gene Classification (TRAC) is a neur
     biotools:primaryContact "Contact form" .
 
 <https://bio.tools/traceqc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_2229,
         edam:topic_3170 ;
@@ -474261,7 +505236,7 @@ TRansfer Learning for Antibiotic Resistance Gene Classification (TRAC) is a neur
     sc:url "https://github.com/LiuzLab/TraceQC" .
 
 <https://bio.tools/tracer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_3293 ;
@@ -474275,8 +505250,25 @@ TRansfer Learning for Antibiotic Resistance Gene Classification (TRAC) is a neur
     sc:softwareHelp <http://tree.bio.ed.ac.uk/software/tracer/> ;
     sc:url "http://tree.bio.ed.ac.uk/software/tracer/" .
 
+<https://bio.tools/tracer-3D> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_3304,
+        edam:topic_3421,
+        edam:topic_3444 ;
+    sc:citation <https://doi.org/10.1101/2021.10.01.462770> ;
+    sc:description "TRACER-3D is a useful toolbox for visualizing the trajectories of recording electrodes(e.g Neuropixels) through different sub-regions of the rat brain." ;
+    sc:featureList edam:operation_3890 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "TRACER" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/Whitlock-Group/TRACER" .
+
 <https://bio.tools/tracespipe> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:description "A hybrid pipeline for reconstruction and analysis of viral and host genomes at multi-organ level." ;
     sc:isAccessibleForFree true ;
@@ -474287,7 +505279,7 @@ TRansfer Learning for Antibiotic Resistance Gene Classification (TRAC) is a neur
     sc:url "https://github.com/viromelab/tracespipe" .
 
 <https://bio.tools/track-global-spread-covid19> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3305,
@@ -474303,7 +505295,7 @@ TRansfer Learning for Antibiotic Resistance Gene Classification (TRAC) is a neur
     biotools:primaryContact "Kevin Chng" .
 
 <https://bio.tools/trackosome> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_2229,
         edam:topic_3382 ;
@@ -474316,7 +505308,7 @@ TRansfer Learning for Antibiotic Resistance Gene Classification (TRAC) is a neur
     sc:url "https://github.com/Trackosome" .
 
 <https://bio.tools/tracktables> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -474339,7 +505331,7 @@ TRansfer Learning for Antibiotic Resistance Gene Classification (TRAC) is a neur
     biotools:primaryContact "Tom Carroll" .
 
 <https://bio.tools/trackviewer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -474361,7 +505353,7 @@ TRansfer Learning for Antibiotic Resistance Gene Classification (TRAC) is a neur
     biotools:primaryContact "Jianhong Ou" .
 
 <https://bio.tools/tracmit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3382 ;
@@ -474378,7 +505370,7 @@ TRansfer Learning for Antibiotic Resistance Gene Classification (TRAC) is a neur
     biotools:primaryContact "Pierre Gönczy" .
 
 <https://bio.tools/tract_segmentation> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3304,
         edam:topic_3384,
         edam:topic_3444 ;
@@ -474391,7 +505383,7 @@ TRansfer Learning for Antibiotic Resistance Gene Classification (TRAC) is a neur
     sc:url "https://github.com/MIC-DKFZ/TractSeg" .
 
 <https://bio.tools/tractor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0153,
         edam:topic_0625,
         edam:topic_0769,
@@ -474408,7 +505400,7 @@ TRansfer Learning for Antibiotic Resistance Gene Classification (TRAC) is a neur
     sc:url "https://github.com/eatkinson/Tractor" .
 
 <https://bio.tools/tracts> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_0736,
@@ -474421,7 +505413,7 @@ TRansfer Learning for Antibiotic Resistance Gene Classification (TRAC) is a neur
     sc:url "http://bioportal.weizmann.ac.il/tracts/tracts.html" .
 
 <https://bio.tools/tracurate> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0219,
         edam:topic_0625,
         edam:topic_2229,
@@ -474437,7 +505429,7 @@ The tracking view is where you will spend most of your time. It provides means f
     sc:url "https://tracurate.gitlab.io/" .
 
 <https://bio.tools/tradeseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0769,
         edam:topic_3170,
@@ -474464,7 +505456,7 @@ tradeSeq provides a flexible method for discovering genes that are differentiall
     sc:url "https://github.com/statOmics/tradeSeq" .
 
 <https://bio.tools/trafac> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0749,
@@ -474484,7 +505476,7 @@ tradeSeq provides a flexible method for discovering genes that are differentiall
     biotools:primaryContact "Anil Jegga" .
 
 <https://bio.tools/trainsel> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0780,
@@ -474498,7 +505490,7 @@ tradeSeq provides a flexible method for discovering genes that are differentiall
     sc:url "https://github.com/TheRocinante-lab/TrainSel" .
 
 <https://bio.tools/trait2d> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Library" ;
     sc:applicationSubCategory edam:topic_0611,
@@ -474516,7 +505508,7 @@ tradeSeq provides a flexible method for discovering genes that are differentiall
     biotools:primaryContact <https://orcid.org/0000-0001-6752-9089> .
 
 <https://bio.tools/traitar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3174,
         edam:topic_3293,
@@ -474534,7 +505526,7 @@ tradeSeq provides a flexible method for discovering genes that are differentiall
     biotools:primaryContact "Alice McHardy" .
 
 <https://bio.tools/traitrateprop> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0625,
@@ -474553,7 +505545,7 @@ tradeSeq provides a flexible method for discovering genes that are differentiall
     sc:url "http://traitrate.tau.ac.il/prop" .
 
 <https://bio.tools/traitsimulation> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2269,
@@ -474573,7 +505565,7 @@ tradeSeq provides a flexible method for discovering genes that are differentiall
     biotools:primaryContact <https://orcid.org/0000-0002-1718-0031> .
 
 <https://bio.tools/tral> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -474590,7 +505582,7 @@ tradeSeq provides a flexible method for discovering genes that are differentiall
     biotools:primaryContact "Lorenzo Gatti" .
 
 <https://bio.tools/trample> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0154,
@@ -474618,18 +505610,15 @@ tradeSeq provides a flexible method for discovering genes that are differentiall
 
 <https://bio.tools/tranalign> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ],
+            sc:additionalType "http://edamontology.org/data_1384" ;
+            sc:name "Sequence alignment (protein)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1384" ;
-            sc:name "Sequence alignment (protein)" ;
-            sc:sameAs "http://edamontology.org/data_1384" ] ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2887" ;
-            sc:name "Nucleic acid sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2887" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2887" ;
+            sc:name "Nucleic acid sequence record" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0097 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -474660,7 +505649,7 @@ tradeSeq provides a flexible method for discovering genes that are differentiall
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/tranalign.html" .
 
 <https://bio.tools/tranalign_ws_husar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:description "Align nucleic coding regions given the aligned proteins." ;
@@ -474674,7 +505663,7 @@ tradeSeq provides a flexible method for discovering genes that are differentiall
     sc:url "http://genius.embnet.dkfz-heidelberg.de/menu/hobit/embdoc/tranalign.html" .
 
 <https://bio.tools/trance> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:citation <https://doi.org/10.14778/3430915.3430933> ;
     sc:description "TRAnsforming Nested Collections Efficiently (TraNCE) is a compilation framework that auto- mates the difficulties of designing distributed analyses with complex, biomedical data types." ;
@@ -474686,14 +505675,14 @@ tradeSeq provides a flexible method for discovering genes that are differentiall
 
 <https://bio.tools/trans-abyss> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ] ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:encodingFormat "http://edamontology.org/format_2546" ;
+            sc:name "Nucleic acid sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:encodingFormat "http://edamontology.org/format_2055" ;
+            sc:name "Nucleic acid sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0114,
         edam:topic_0196,
@@ -474710,7 +505699,7 @@ tradeSeq provides a flexible method for discovering genes that are differentiall
     biotools:primaryContact "Readman Chiu" .
 
 <https://bio.tools/transalign> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3047 ;
     sc:author "Ketil Malde" ;
@@ -474728,14 +505717,13 @@ tradeSeq provides a flexible method for discovering genes that are differentiall
 
 <https://bio.tools/transat> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2725" ;
-            sc:name "Ensembl transcript ID" ;
-            sc:sameAs "http://edamontology.org/data_2725" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2725" ;
+            sc:name "Ensembl transcript ID" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0102,
@@ -474761,7 +505749,7 @@ tradeSeq provides a flexible method for discovering genes that are differentiall
     sc:url "https://github.com/ShihChingYu/TransAT" .
 
 <https://bio.tools/transborrow> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3170,
         edam:topic_3308 ;
@@ -474780,7 +505768,7 @@ RNA-seq technology is widely used in various transcriptomic studies and provides
     sc:url "https://sourceforge.net/projects/transcriptomeassembly/files/TransBorrow" .
 
 <https://bio.tools/transcirc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0154,
         edam:topic_0659,
@@ -474797,18 +505785,18 @@ RNA-seq technology is widely used in various transcriptomic studies and provides
 
 <https://bio.tools/transclust> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2730" ;
-            sc:name "COGEME unisequence ID" ;
-            sc:sameAs "http://edamontology.org/data_2730" ] ;
+            sc:additionalType "http://edamontology.org/data_2730" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "COGEME unisequence ID" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2161" ;
-            sc:name "Sequence similarity plot" ;
-            sc:sameAs "http://edamontology.org/data_2161" ],
+            sc:additionalType "http://edamontology.org/data_2161" ;
+            sc:encodingFormat "http://edamontology.org/format_2333" ;
+            sc:name "Sequence similarity plot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1916" ;
-            sc:name "Alignment" ;
-            sc:sameAs "http://edamontology.org/data_1916" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1916" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application",
         "Web application" ;
@@ -474829,7 +505817,7 @@ RNA-seq technology is widely used in various transcriptomic studies and provides
     biotools:primaryContact <http://orcid.org/0000-0002-0282-0462> .
 
 <https://bio.tools/transcompp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0625,
         edam:topic_2229,
@@ -474845,7 +505833,7 @@ RNA-seq technology is widely used in various transcriptomic studies and provides
     sc:url "http://github.com/nsuhasj/Transcompp" .
 
 <https://bio.tools/transcriptator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0099,
@@ -474863,7 +505851,7 @@ RNA-seq technology is widely used in various transcriptomic studies and provides
     sc:url "http://www-labgtp.na.icar.cnr.it/Transcriptator/" .
 
 <https://bio.tools/transcriptogramer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2259,
@@ -474884,7 +505872,7 @@ RNA-seq technology is widely used in various transcriptomic studies and provides
     biotools:primaryContact "Diego Morais" .
 
 <https://bio.tools/transcriptomereconstructor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0749,
         edam:topic_3170,
@@ -474902,14 +505890,8 @@ TranscriptomeReconstructoR is an R package for data-driven annotation of transcr
     sc:name "TranscriptomeReconstructoR" ;
     sc:url "https://github.com/Maxim-Ivanov/TranscriptomeReconstructoR" .
 
-<https://bio.tools/transcriptomic_data_analysis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
-    sc:description "CD Genomics proprietary GenSeqTM Technology provides Transcriptomic Data Analysis service. We have extensive experience in helping solve a wide variety of bioinformatics problems, large and small." ;
-    sc:name "Transcriptomic Data Analysis" ;
-    sc:url "https://www.cd-genomics.com/Transcriptomic-Data-Analysis.html" .
-
 <https://bio.tools/transcriptr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3169,
@@ -474934,14 +505916,12 @@ TranscriptomeReconstructoR is an R package for data-driven annotation of transcr
 
 <https://bio.tools/transeq> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2886" ;
-            sc:name "Protein sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2886" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2886" ;
+            sc:name "Protein sequence record" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -474972,14 +505952,12 @@ TranscriptomeReconstructoR is an R package for data-driven annotation of transcr
 
 <https://bio.tools/transeq-ebi> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:name "Protein sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:name "Nucleic acid sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
@@ -475001,7 +505979,7 @@ TranscriptomeReconstructoR is an R package for data-driven annotation of transcr
     biotools:primaryContact "Web Production" .
 
 <https://bio.tools/transfac> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -475024,8 +506002,42 @@ TranscriptomeReconstructoR is an R package for data-driven annotation of transcr
     sc:url "http://www.gene-regulation.com/pub/databases.html#transfac" ;
     biotools:primaryContact "Webmaster" .
 
+<https://bio.tools/transfacpred> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:description "Tool for prediction of transcription factor given a protein sequence" ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "transfacpred" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/transfacpred/> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/transfacpred/" .
+
+<https://bio.tools/transfergwas> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0634,
+        edam:topic_3337,
+        edam:topic_3384,
+        edam:topic_3474,
+        edam:topic_3517 ;
+    sc:citation <https://doi.org/10.1101/2021.10.22.465430> ;
+    sc:description "Repository for transferGWAS, a deep learning method for performing genome-wide association studies on full medical imaging data." ;
+    sc:featureList edam:operation_3791,
+        edam:operation_3920,
+        edam:operation_3927 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "transferGWAS" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/mkirchler/transferGWAS/" .
+
 <https://bio.tools/transfind> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -475047,7 +506059,7 @@ TranscriptomeReconstructoR is an R package for data-driven annotation of transcr
     biotools:primaryContact "Nils Bluethgen" .
 
 <https://bio.tools/transfold> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -475070,7 +506082,7 @@ TranscriptomeReconstructoR is an R package for data-driven annotation of transcr
     biotools:primaryContact "Jérôme Waldispühl" .
 
 <https://bio.tools/transformercpi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0154,
         edam:topic_3336,
@@ -475087,7 +506099,7 @@ TranscriptomeReconstructoR is an R package for data-driven annotation of transcr
     sc:url "https://github.com/lifanchen-simm/transformerCPI" .
 
 <https://bio.tools/transformers-sklearn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0218,
         edam:topic_3382,
@@ -475106,8 +506118,33 @@ TranscriptomeReconstructoR is an R package for data-driven annotation of transcr
         "Windows" ;
     sc:url "https://github.com/trueto/transformers_sklearn" .
 
+<https://bio.tools/transgene-design> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1936" ;
+            sc:name "Sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0749,
+        edam:topic_3320,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC139>,
+        "pmcid:PMC9048660",
+        "pubmed:35244144" ;
+    sc:description "A web application for the design of mammalian transgenes." ;
+    sc:featureList edam:operation_0446,
+        edam:operation_2428,
+        edam:operation_2962 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "Transgene-design" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://transgene-design.bath.ac.uk" .
+
 <https://bio.tools/transgenescan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654,
@@ -475123,7 +506160,7 @@ TranscriptomeReconstructoR is an R package for data-driven annotation of transcr
     sc:url "https://github.com/COL-IU/TransGeneScan" .
 
 <https://bio.tools/transit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_0798,
@@ -475140,7 +506177,7 @@ TranscriptomeReconstructoR is an R package for data-driven annotation of transcr
     biotools:primaryContact <http://orcid.org/0000-0003-3867-0299> .
 
 <https://bio.tools/translate> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0121,
@@ -475158,7 +506195,7 @@ TranscriptomeReconstructoR is an R package for data-driven annotation of transcr
     biotools:primaryContact "ExPASy helpdesk" .
 
 <https://bio.tools/translatome> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -475181,7 +506218,7 @@ TranscriptomeReconstructoR is an R package for data-driven annotation of transcr
         "Toma Tebaldi" .
 
 <https://bio.tools/translatorx> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -475202,7 +506239,7 @@ TranscriptomeReconstructoR is an R package for data-driven annotation of transcr
     biotools:primaryContact "TranslatorX Support" .
 
 <https://bio.tools/translnc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0108,
@@ -475226,7 +506263,7 @@ TranscriptomeReconstructoR is an R package for data-driven annotation of transcr
     sc:url "http://bio-bigdata.hrbmu.edu.cn/TransLnc/" .
 
 <https://bio.tools/transmart> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3303 ;
@@ -475246,8 +506283,28 @@ TranscriptomeReconstructoR is an R package for data-driven annotation of transcr
     sc:softwareVersion "16.1" ;
     sc:url "http://transmartfoundation.org/" .
 
+<https://bio.tools/transmeta> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0196,
+        edam:topic_0203,
+        edam:topic_3170 ;
+    sc:citation <https://doi.org/10.1101/GR.276434.121>,
+        "pubmed:35858749" ;
+    sc:description "TransMeta is an assembler that can simultaneously assemble RNA-seq reads of multiple samples. TransMeta can output a unified set of meta-annotations(GTF format) for all samples in an RNA-seq experiment and use the information from all the samples to generate a set of transcripts for each individual sample. TransMeta constructs the novel vector-weighted splicing graph model, in which the edges and nodes are weighted by vectors rather than single numbers with the element in kth position of the vectors being the corresponding weight in sample k. And TransMeta employs a cosine-similarity based combing strategy and label setting algorithm to recover the transcripts. TransMeta takes a file that lists the alignment files(Bam format) of multiple RNA-seq samples as input, and outputs all assembled candidate transcripts in GTF format." ;
+    sc:featureList edam:operation_0310,
+        edam:operation_3563,
+        edam:operation_3800 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "TransMeta" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/yutingsdu/TransMeta" .
+
 <https://bio.tools/transmir> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0204,
@@ -475270,7 +506327,7 @@ TranscriptomeReconstructoR is an R package for data-driven annotation of transcr
     biotools:primaryContact "Dr. Qinghua Cui" .
 
 <https://bio.tools/transmodis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3179 ;
@@ -475282,7 +506339,7 @@ TranscriptomeReconstructoR is an R package for data-driven annotation of transcr
     sc:url "http://wanglab.ucsd.edu/star/download.php" .
 
 <https://bio.tools/transphire> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3077,
         edam:topic_3336,
@@ -475298,7 +506355,7 @@ TranscriptomeReconstructoR is an R package for data-driven annotation of transcr
     sc:url "https://github.com/MPI-Dortmund/transphire" .
 
 <https://bio.tools/transphylo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0622,
@@ -475316,7 +506373,7 @@ TranscriptomeReconstructoR is an R package for data-driven annotation of transcr
     sc:url "https://github.com/xavierdidelot/transphylo" .
 
 <https://bio.tools/transpi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library",
         "Workflow" ;
@@ -475337,7 +506394,7 @@ TransPi is based on the scientific workflow manager Nextflow. It is designed to
     sc:url "https://github.com/palmuc/TransPi.git" .
 
 <https://bio.tools/transpire> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
         edam:topic_0820,
@@ -475355,24 +506412,8 @@ TransPi is based on the scientific workflow manager Nextflow. It is designed to
     sc:softwareHelp <https://transpire.readthedocs.io/en/latest> ;
     sc:url "http://github.com/cristealab/TRANSPIRE_JASMS2020" .
 
-<https://bio.tools/transplant_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3418,
-        edam:topic_3421,
-        edam:topic_3422 ;
-    sc:citation <https://doi.org/10.1111/PETR.13612>,
-        "pubmed:31743564" ;
-    sc:description """Assessing the acceptability and efficacy of teens taking charge.
-
-This hub offers information and tools to help teens understand what to expect before, during and after kidney transplant surgery. You will learn how you will be assessed for surgery and what to do while waiting for your transplant. You will also learn about adjusting to life with your new kidney, for example how to manage your medications, make healthy lifestyle choices, handle stress and make decisions that set you up for long-term success.
-
-||| NAME (transplant) SIMILAR TO (PUB. DIFFERENT) bio.tools/Transplant (Transplant).
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'Participants-kidney'""" ;
-    sc:name "transplant_autogenerated" ;
-    sc:url "https://teens.aboutkidshealth.ca/kidneytransplant" .
-
 <https://bio.tools/transporttools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0176,
         edam:topic_0602 ;
@@ -475388,7 +506429,7 @@ This hub offers information and tools to help teens understand what to expect be
     sc:url "https://github.com/labbit-eu/transport_tools" .
 
 <https://bio.tools/transposcope> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0199,
         edam:topic_0622,
@@ -475406,7 +506447,7 @@ This hub offers information and tools to help teens understand what to expect be
     sc:url "https://github.com/FenyoLab/transposcope" .
 
 <https://bio.tools/transposome> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0654,
@@ -475421,7 +506462,7 @@ This hub offers information and tools to help teens understand what to expect be
     sc:url "http://sestaton.github.io/Transposome/" .
 
 <https://bio.tools/transposonultimate> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0637,
@@ -475438,7 +506479,7 @@ This hub offers information and tools to help teens understand what to expect be
     sc:url "https://cellgeni.cog.sanger.ac.uk/browser.html?shared=transposonultimate/" .
 
 <https://bio.tools/transps> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3308 ;
@@ -475452,7 +506493,7 @@ This hub offers information and tools to help teens understand what to expect be
     sc:url "https://bioinformatics.cs.vt.edu/zhanglab/software/transps/" .
 
 <https://bio.tools/transsynw> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0749,
         edam:topic_2229,
@@ -475471,8 +506512,26 @@ Starting cell population: Select or upload a tab-separated file with the single-
     sc:name "TransSynW" ;
     sc:url "https://transsynw.lcsb.uni.lu/" .
 
+<https://bio.tools/transtermhp> a sc:SoftwareApplication ;
+    bsc:output [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1772" ;
+            sc:name "Score" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:applicationSubCategory edam:topic_0749 ;
+    sc:citation <https://doi.org/10.1186/gb-2007-8-2-r22>,
+        "pmcid:PMC1852404",
+        "pubmed:17313685" ;
+    sc:description "TransTermHP finds rho-independent transcription terminators in bacterial genomes. Each terminator found by the program is assigned a confidence value that estimates its probability of being a true terminator" ;
+    sc:featureList edam:operation_0438 ;
+    sc:isAccessibleForFree true ;
+    sc:name "TransTermHP" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://transterm.cbcb.umd.edu/" .
+
 <https://bio.tools/transview> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0102,
@@ -475495,7 +506554,7 @@ Starting cell population: Select or upload a tab-separated file with the single-
     biotools:primaryContact "Julius Muller" .
 
 <https://bio.tools/transvw> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3067,
@@ -475511,7 +506570,7 @@ Starting cell population: Select or upload a tab-separated file with the single-
     sc:url "https://github.com/JLiangLab/TransVW" .
 
 <https://bio.tools/transynergy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0209,
         edam:topic_0602,
@@ -475527,7 +506586,7 @@ Starting cell population: Select or upload a tab-separated file with the single-
     sc:url "https://github.com/qiaoliuhub/drug_combination" .
 
 <https://bio.tools/trantrace> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0203,
         edam:topic_3071,
@@ -475538,7 +506597,7 @@ Starting cell population: Select or upload a tab-separated file with the single-
     sc:url "https://github.com/sgi-drylab/trantrace" .
 
 <https://bio.tools/trap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0157,
         edam:topic_2885,
@@ -475553,7 +506612,7 @@ Starting cell population: Select or upload a tab-separated file with the single-
     sc:url "http://www.coccidia.icb.usp.br/trap/index.html" .
 
 <https://bio.tools/trap-seq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0749,
         edam:topic_3168,
@@ -475569,7 +506628,7 @@ Starting cell population: Select or upload a tab-separated file with the single-
     sc:url "https://github.com/TerminatorJ/CRISPR-TRAP-seq.git" .
 
 <https://bio.tools/trapd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0622,
@@ -475594,14 +506653,13 @@ Finding genes associated with Mendelian disorders can often be challenging.""" ;
 
 <https://bio.tools/trapid> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1234" ;
-            sc:name "Sequence set (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1234" ] ;
+            sc:additionalType "http://edamontology.org/data_1234" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence set (nucleic acid)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0907" ;
-            sc:name "Protein family report" ;
-            sc:sameAs "http://edamontology.org/data_0907" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0907" ;
+            sc:name "Protein family report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_0797 ;
@@ -475620,22 +506678,22 @@ Finding genes associated with Mendelian disorders can often be challenging.""" ;
 
 <https://bio.tools/trapline> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3495" ;
-            sc:name "RNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3495" ] ;
+            sc:additionalType "http://edamontology.org/data_3495" ;
+            sc:encodingFormat "http://edamontology.org/format_1933" ;
+            sc:name "RNA sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0928" ;
-            sc:name "Gene expression profile" ;
-            sc:sameAs "http://edamontology.org/data_0928" ],
+            sc:additionalType "http://edamontology.org/data_0928" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Gene expression profile" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1383" ;
-            sc:name "Sequence alignment (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1383" ],
+            sc:additionalType "http://edamontology.org/data_2628" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "BioGRID interaction ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2628" ;
-            sc:name "BioGRID interaction ID" ;
-            sc:sameAs "http://edamontology.org/data_2628" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1383" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Sequence alignment (nucleic acid)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_3308 ;
@@ -475656,7 +506714,7 @@ Finding genes associated with Mendelian disorders can often be challenging.""" ;
     biotools:primaryContact "Markus Wolfien" .
 
 <https://bio.tools/trapp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0176,
         edam:topic_3125,
@@ -475679,7 +506737,7 @@ Finding genes associated with Mendelian disorders can often be challenging.""" ;
         "Daria Kokh" .
 
 <https://bio.tools/trapr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3170,
@@ -475700,7 +506758,7 @@ Finding genes associated with Mendelian disorders can often be challenging.""" ;
     biotools:primaryContact "Jae Hyun Lim" .
 
 <https://bio.tools/traps-vari> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0199,
         edam:topic_0820,
@@ -475718,22 +506776,22 @@ Finding genes associated with Mendelian disorders can often be challenging.""" ;
 
 <https://bio.tools/traser> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1017" ;
-            sc:name "Sequence range" ;
-            sc:sameAs "http://edamontology.org/data_1017" ],
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "DNA sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3494" ;
-            sc:name "DNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3494" ] ;
+            sc:additionalType "http://edamontology.org/data_1017" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Sequence range" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0951" ;
-            sc:name "Statistical estimate score" ;
-            sc:sameAs "http://edamontology.org/data_0951" ],
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Plot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0951" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Statistical estimate score" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2885,
@@ -475752,8 +506810,31 @@ Finding genes associated with Mendelian disorders can often be challenging.""" ;
     sc:url "http://bioconductor.org/packages/release/bioc/html/traseR.html" ;
     biotools:primaryContact "li chen" .
 
+<https://bio.tools/trasig> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0602,
+        edam:topic_2229,
+        edam:topic_3170 ;
+    sc:citation <https://doi.org/10.1186/S13059-022-02629-7>,
+        "pmcid:PMC8900372",
+        "pubmed:35255944" ;
+    sc:description "Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data." ;
+    sc:featureList edam:operation_0313,
+        edam:operation_0314,
+        edam:operation_3216,
+        edam:operation_3890 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "TraSig" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/doraadong/TraSig" .
+
 <https://bio.tools/traveler> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0097,
@@ -475772,7 +506853,7 @@ Finding genes associated with Mendelian disorders can often be challenging.""" ;
         "Richard Elias" .
 
 <https://bio.tools/trawlerweb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -475795,7 +506876,7 @@ Finding genes associated with Mendelian disorders can often be challenging.""" ;
         "Mirana Ramialison" .
 
 <https://bio.tools/trdistiller> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0157,
@@ -475810,8 +506891,32 @@ Finding genes associated with Mendelian disorders can often be challenging.""" ;
     sc:softwareHelp <http://bioinfo.montp.cnrs.fr/?r=TRDistiller> ;
     sc:url "http://bioinfo.montp.cnrs.fr/?r=TRDistiller" .
 
+<https://bio.tools/treasure> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0659,
+        edam:topic_0769,
+        edam:topic_3170 ;
+    sc:citation <https://doi.org/10.1186/S12859-022-04691-1>,
+        "pmcid:PMC9063265",
+        "pubmed:35501677" ;
+    sc:description "R-based GUI package analyzing tRNA expression profiles from small RNA sequencing data." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_0464,
+        edam:operation_3192,
+        edam:operation_3800 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "tReasure" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://github.com/jinoklee/tReasure/blob/master/doc/tReasure-Manual-220109.pdf> ;
+    sc:url "https://treasure.pmrc.re.kr" .
+
 <https://bio.tools/treat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_2269,
@@ -475828,7 +506933,7 @@ Finding genes associated with Mendelian disorders can often be challenging.""" ;
     sc:url "http://www.hanzhang.name/softwares/treat" .
 
 <https://bio.tools/treatable-id> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3325,
         edam:topic_3404,
@@ -475850,8 +506955,29 @@ Finding genes associated with Mendelian disorders can often be challenging.""" ;
     sc:url "http://treatable-id.org" ;
     biotools:primaryContact <https://orcid.org/0000-0002-2648-8337> .
 
+<https://bio.tools/treatmentpatterns> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0602,
+        edam:topic_3063,
+        edam:topic_3303 ;
+    sc:citation <https://doi.org/10.1101/2022.01.24.22269588> ;
+    sc:description "An R package to analyze treatment patterns of a study population of interest." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3435,
+        edam:operation_3436 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Apache-2.0" ;
+    sc:name "TreatmentPatterns" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://github.com/mi-erasmusmc/TreatmentPatterns/blob/master/docs/TreatmentPatternsStudy.pdf>,
+        <https://github.com/mi-erasmusmc/TreatmentPatterns/blob/master/docs/TreatmentPatterns_1.0.0.pdf> ;
+    sc:url "https://github.com/mi-erasmusmc/TreatmentPatterns" .
+
 <https://bio.tools/tree-hmm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_3293,
@@ -475867,7 +506993,7 @@ Finding genes associated with Mendelian disorders can often be challenging.""" ;
     sc:url "https://cbcl.ics.uci.edu//doku.php/software#tree-hmm" .
 
 <https://bio.tools/tree-puzzle> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0084,
@@ -475890,7 +507016,7 @@ Finding genes associated with Mendelian disorders can often be challenging.""" ;
         "Heiko A. Schmidt" .
 
 <https://bio.tools/tree_network> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:description "simple GUI tool for clusterization of data" ;
     sc:featureList edam:operation_3432,
@@ -475905,7 +507031,7 @@ Finding genes associated with Mendelian disorders can often be challenging.""" ;
     biotools:primaryContact "W.M. Saj" .
 
 <https://bio.tools/tree_shape_statistics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3293,
         edam:topic_3305 ;
@@ -475921,8 +507047,27 @@ Finding genes associated with Mendelian disorders can often be challenging.""" ;
     sc:name "tree shape statistics" ;
     sc:url "https://github.com/WGS-TB/TreeShapeStats" .
 
+<https://bio.tools/treeandleaf> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_2640,
+        edam:topic_3305 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAB819>,
+        "pubmed:34864914" ;
+    sc:description "The TreeAndLeaf package combines unrooted and force-directed graph algorithms in order to layout binary trees, aiming to represent multiple layers of information onto dendrogram leaves." ;
+    sc:featureList edam:operation_2938,
+        edam:operation_3925 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Artistic-2.0" ;
+    sc:name "TreeAndLeaf" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <http://bioconductor.org/packages/release/bioc/manuals/TreeAndLeaf/man/TreeAndLeaf.pdf> ;
+    sc:url "http://bioconductor.org/packages/TreeAndLeaf/" .
+
 <https://bio.tools/treeasy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0194,
         edam:topic_0621,
         edam:topic_0769,
@@ -475944,14 +507089,12 @@ This python script can be used to infer species trees and phylogenetic networks
 
 <https://bio.tools/treecon> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0850" ;
-            sc:name "Sequence set" ;
-            sc:sameAs "http://edamontology.org/data_0850" ] ;
+            sc:additionalType "http://edamontology.org/data_0850" ;
+            sc:name "Sequence set" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0872" ;
-            sc:name "Phylogenetic tree" ;
-            sc:sameAs "http://edamontology.org/data_0872" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0872" ;
+            sc:name "Phylogenetic tree" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3299 ;
     sc:citation "pubmed:7828077" ;
@@ -475967,7 +507110,7 @@ This python script can be used to infer species trees and phylogenetic networks
     sc:url "http://bioinformatics.psb.ugent.be/software/details/TREECON" .
 
 <https://bio.tools/treedet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -475988,7 +507131,7 @@ This python script can be used to infer species trees and phylogenetic networks
     biotools:primaryContact "TreeDet Support" .
 
 <https://bio.tools/treedomviewer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -476006,14 +507149,14 @@ This python script can be used to infer species trees and phylogenetic networks
 
 <https://bio.tools/treedyn> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0872" ;
-            sc:name "Phylogenetic tree" ;
-            sc:sameAs "http://edamontology.org/data_0872" ] ;
+            sc:additionalType "http://edamontology.org/data_0872" ;
+            sc:encodingFormat "http://edamontology.org/format_1910" ;
+            sc:name "Phylogenetic tree" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1707" ;
-            sc:name "Phylogenetic tree image" ;
-            sc:sameAs "http://edamontology.org/data_1707" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1707" ;
+            sc:encodingFormat "http://edamontology.org/format_3603" ;
+            sc:name "Phylogenetic tree image" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0084 ;
@@ -476033,14 +507176,12 @@ This python script can be used to infer species trees and phylogenetic networks
 
 <https://bio.tools/treefam> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:name "Protein sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0858" ;
-            sc:name "Sequence signature matches" ;
-            sc:sameAs "http://edamontology.org/data_0858" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0858" ;
+            sc:name "Sequence signature matches" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0084,
@@ -476063,7 +507204,7 @@ This python script can be used to infer species trees and phylogenetic networks
     biotools:primaryContact "Fabian Schreiber" .
 
 <https://bio.tools/treegibbssampler> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0622,
@@ -476079,7 +507220,7 @@ This python script can be used to infer species trees and phylogenetic networks
     sc:url "http://hulab.ucf.edu/software" .
 
 <https://bio.tools/treegl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2259,
@@ -476097,26 +507238,26 @@ This python script can be used to infer species trees and phylogenetic networks
 
 <https://bio.tools/treegraph_2> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2526" ;
-            sc:name "Text data" ;
-            sc:sameAs "http://edamontology.org/data_2526" ],
+            sc:additionalType "http://edamontology.org/data_2526" ;
+            sc:encodingFormat "http://edamontology.org/format_3751" ;
+            sc:name "Text data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0872" ;
-            sc:name "Phylogenetic tree" ;
-            sc:sameAs "http://edamontology.org/data_0872" ] ;
+            sc:additionalType "http://edamontology.org/data_0872" ;
+            sc:encodingFormat "http://edamontology.org/format_3159" ;
+            sc:name "Phylogenetic tree" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2526" ;
-            sc:name "Text data" ;
-            sc:sameAs "http://edamontology.org/data_2526" ],
+            sc:additionalType "http://edamontology.org/data_0872" ;
+            sc:encodingFormat "http://edamontology.org/format_1910" ;
+            sc:name "Phylogenetic tree" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1707" ;
-            sc:name "Phylogenetic tree image" ;
-            sc:sameAs "http://edamontology.org/data_1707" ],
+            sc:additionalType "http://edamontology.org/data_2526" ;
+            sc:encodingFormat "http://edamontology.org/format_3751" ;
+            sc:name "Text data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0872" ;
-            sc:name "Phylogenetic tree" ;
-            sc:sameAs "http://edamontology.org/data_0872" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1707" ;
+            sc:encodingFormat "http://edamontology.org/format_3591" ;
+            sc:name "Phylogenetic tree image" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_3050,
@@ -476147,7 +507288,7 @@ This python script can be used to infer species trees and phylogenetic networks
     biotools:primaryContact "Ben Stöver" .
 
 <https://bio.tools/treeheatr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0749,
         edam:topic_3474 ;
@@ -476174,7 +507315,7 @@ treeheatr incorporates a heatmap at the terminal node of your decision tree. The
     sc:url "https://trang1618.github.io/treeheatr" .
 
 <https://bio.tools/treehouse> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0194,
         edam:topic_0780 ;
@@ -476189,7 +507330,7 @@ treeheatr incorporates a heatmap at the terminal node of your decision tree. The
     sc:url "https://github.com/JLSteenwyk/treehouse" .
 
 <https://bio.tools/treeio> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3293 ;
     sc:citation <https://doi.org/10.1093/molbev/msz240> ;
@@ -476209,29 +507350,8 @@ treeheatr incorporates a heatmap at the terminal node of your decision tree. The
     sc:url "http://bioconductor.org/packages/release/bioc/html/treeio.html" ;
     biotools:primaryContact "Guangchuang Yu" .
 
-<https://bio.tools/treeio_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0080,
-        edam:topic_0084 ;
-    sc:citation <https://doi.org/10.1093/MOLBEV/MSZ240>,
-        "pubmed:31633786" ;
-    sc:description """an R package for phylogenetic tree input and output with richly annotated and associated data.
-
-Base Classes and Functions for Phylogenetic Tree Input and Output.
-
-'treeio' is an R package to make it easier to import and store phylogenetic tree with associated data; and to link external data from different sources to phylogeny. It also supports exporting phylogenetic tree with heterogeneous associated data to a single tree file and can be served as a platform for merging tree with associated data and converting file formats.
-
-||| NAME EQUAL TO (PUB. DIFFERENT) bio.tools/treeio""" ;
-    sc:featureList edam:operation_0323,
-        edam:operation_0326,
-        edam:operation_0551,
-        edam:operation_0558,
-        edam:operation_0567 ;
-    sc:license "Artistic-2.0" ;
-    sc:name "treeio_autogenerated" ;
-    sc:url "https://www.bioconductor.org/packages/treeio/" .
-
 <https://bio.tools/treejuxtaposer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0637 ;
@@ -476247,8 +507367,30 @@ Base Classes and Functions for Phylogenetic Tree Input and Output.
     biotools:primaryContact "Bug report",
         "Mailing list" .
 
+<https://bio.tools/treeknit> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0084,
+        edam:topic_2815,
+        edam:topic_3943 ;
+    sc:citation <https://doi.org/10.1371/JOURNAL.PCBI.1010394>,
+        "pmcid:PMC9447925",
+        "pubmed:35984845" ;
+    sc:description "TreeKnit is a Julia package that performs the inference of Ancestral Reassortment Graph for segmented genomes (typically, human influenza)." ;
+    sc:featureList edam:operation_0323,
+        edam:operation_0326,
+        edam:operation_0567 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "TreeKnit" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://pierrebarrat.github.io/TreeKnit.jl/> ;
+    sc:url "https://github.com/PierreBarrat/TreeKnit" .
+
 <https://bio.tools/treeko> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0622,
@@ -476264,7 +507406,7 @@ Base Classes and Functions for Phylogenetic Tree Input and Output.
     sc:url "http://treeko.cgenomics.org/" .
 
 <https://bio.tools/treeld> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3055 ;
@@ -476280,7 +507422,7 @@ Base Classes and Functions for Phylogenetic Tree Input and Output.
     sc:url "https://sph.umich.edu/csg/software_pages/treeld.html" .
 
 <https://bio.tools/treelikeness> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0081,
@@ -476298,7 +507440,7 @@ This repository contains code to simulate a series of sequence alignments and es
     sc:url "https://github.com/caitlinch/treelikeness" .
 
 <https://bio.tools/treeman> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_3053,
@@ -476318,7 +507460,7 @@ This repository contains code to simulate a series of sequence alignments and es
     biotools:primaryContact "Dominic J. Bennett" .
 
 <https://bio.tools/treemap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0203,
         edam:topic_0625,
@@ -476337,7 +507479,7 @@ TreeMap prioritizes putative causal variants in cis-eQTL accounting for multisit
     sc:url "https://github.com/liliulab/treemap" .
 
 <https://bio.tools/treemix> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3056 ;
     sc:citation <https://doi.org/10.1371/journal.pgen.1002967> ;
@@ -476351,7 +507493,7 @@ TreeMap prioritizes putative causal variants in cis-eQTL accounting for multisit
     sc:url "https://bitbucket.org/nygcresearch/treemix/wiki/Home" .
 
 <https://bio.tools/treerefiner> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0097,
@@ -476368,7 +507510,7 @@ TreeMap prioritizes putative causal variants in cis-eQTL accounting for multisit
     sc:url "http://treerefiner.stanford.edu/" .
 
 <https://bio.tools/treesaap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0084,
@@ -476391,7 +507533,7 @@ TreeMap prioritizes putative causal variants in cis-eQTL accounting for multisit
     biotools:primaryContact "S. Woolley" .
 
 <https://bio.tools/treesample> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3053,
         edam:topic_3293,
@@ -476408,7 +507550,7 @@ TreeMap prioritizes putative causal variants in cis-eQTL accounting for multisit
     sc:url "https://code.google.com/p/treesample/" .
 
 <https://bio.tools/treesapp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0602,
         edam:topic_3174,
@@ -476427,8 +507569,27 @@ If you are working with a particularly complex reference package, from an orthol
     sc:name "TreeSAPP" ;
     sc:url "https://github.com/hallamlab/TreeSAPP" .
 
+<https://bio.tools/treesearch> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_0625,
+        edam:topic_3293 ;
+    sc:citation <https://doi.org/10.1101/2021.11.08.467735> ;
+    sc:description "R package for phylogenetic tree search under custom optimality criteria" ;
+    sc:featureList edam:operation_0323,
+        edam:operation_0326,
+        edam:operation_0567 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "TreeSearch" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://ms609.github.io/TreeSearch/" .
+
 <https://bio.tools/treesim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_2269,
@@ -476445,8 +507606,29 @@ If you are working with a particularly complex reference package, from an orthol
     sc:softwareHelp <https://cran.r-project.org/web/packages/TreeSim/index.html> ;
     sc:url "http://cran.r-project.org/web/packages/TreeSim/index.html" .
 
+<https://bio.tools/treesist-tb> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0199,
+        edam:topic_0625,
+        edam:topic_3336,
+        edam:topic_3474,
+        edam:topic_3673 ;
+    sc:citation <https://doi.org/10.1186/S12864-022-08291-4>,
+        "pmcid:PMC8753810",
+        "pubmed:35016609" ;
+    sc:description "A modified decision tree approach to improve the prediction and mutation discovery for drug resistance in Mycobacterium tuberculosis." ;
+    sc:featureList edam:operation_3196,
+        edam:operation_3226,
+        edam:operation_3227 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "Treesist-TB" ;
+    sc:operatingSystem "Linux" ;
+    sc:url "https://github.com/WDee/Treesist-TB" .
+
 <https://bio.tools/treeview> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0092,
@@ -476464,7 +507646,7 @@ If you are working with a particularly complex reference package, from an orthol
     biotools:primaryContact "Rod Page" .
 
 <https://bio.tools/treevis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_3293,
@@ -476480,7 +507662,7 @@ If you are working with a particularly complex reference package, from an orthol
     sc:url "http://pengqiu.gatech.edu/software/TreeVis/index.htm" .
 
 <https://bio.tools/treewas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3293,
         edam:topic_3474,
@@ -476497,7 +507679,7 @@ If you are working with a particularly complex reference package, from an orthol
     biotools:primaryContact "Xavier Didelot" .
 
 <https://bio.tools/tremble-tem-analysis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0611,
         edam:topic_3344,
@@ -476515,7 +507697,7 @@ If you are working with a particularly complex reference package, from an orthol
     biotools:primaryContact "Jenny" .
 
 <https://bio.tools/tremoroton> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:citation <https://doi.org/10.1016/J.CNP.2019.11.004>,
         "pmcid:PMC6961062",
         "pubmed:31956739" ;
@@ -476528,7 +507710,7 @@ The electrophysiological classification of tremors can be a key element in the d
     sc:url "https://electrophysiology.shinyapps.io/Tremoroton/" .
 
 <https://bio.tools/trena> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0204,
@@ -476548,7 +507730,7 @@ The electrophysiological classification of tremors can be a key element in the d
     biotools:primaryContact "Paul Shannon" .
 
 <https://bio.tools/trend> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0593,
         edam:topic_3365,
@@ -476568,7 +507750,7 @@ The electrophysiological classification of tremors can be a key element in the d
     sc:url "https://biochem.missouri.edu/trend/" .
 
 <https://bio.tools/trend-db> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_3295,
         edam:topic_3308,
@@ -476589,46 +507771,45 @@ This work contains a number of TREND-seq datasets investigating transcriptome-wi
 
 <https://bio.tools/trend_protein_evolution_function> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0872" ;
-            sc:name "Phylogenetic tree" ;
-            sc:sameAs "http://edamontology.org/data_0872" ],
+            sc:additionalType "http://edamontology.org/data_2385" ;
+            sc:name "RefSeq accession (protein)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1900" ;
-            sc:name "NCBI locus tag" ;
-            sc:sameAs "http://edamontology.org/data_1900" ],
+            sc:additionalType "http://edamontology.org/data_1233" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence set (protein)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2385" ;
-            sc:name "RefSeq accession (protein)" ;
-            sc:sameAs "http://edamontology.org/data_2385" ],
+            sc:additionalType "http://edamontology.org/data_1900" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "NCBI locus tag" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1384" ;
-            sc:name "Protein sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_1384" ],
+            sc:additionalType "http://edamontology.org/data_0872" ;
+            sc:encodingFormat "http://edamontology.org/format_1910" ;
+            sc:name "Phylogenetic tree" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1233" ;
-            sc:name "Sequence set (protein)" ;
-            sc:sameAs "http://edamontology.org/data_1233" ] ;
+            sc:additionalType "http://edamontology.org/data_1384" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence alignment" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ],
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:encodingFormat "http://edamontology.org/format_3464" ;
+            sc:name "Protein features" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0872" ;
-            sc:name "Phylogenetic tree" ;
-            sc:sameAs "http://edamontology.org/data_0872" ],
+            sc:additionalType "http://edamontology.org/data_1245" ;
+            sc:encodingFormat "http://edamontology.org/format_3464" ;
+            sc:name "Sequence cluster (protein)" ],
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-            sc:identifier "http://edamontology.org/data_1384" ;
-            sc:name "Protein sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_1384" ],
+            sc:additionalType "http://edamontology.org/data_1384" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ],
+            sc:additionalType "http://edamontology.org/data_0872" ;
+            sc:encodingFormat "http://edamontology.org/format_1910" ;
+            sc:name "Phylogenetic tree" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1245" ;
-            sc:name "Sequence cluster (protein)" ;
-            sc:sameAs "http://edamontology.org/data_1245" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3604" ;
+            sc:name "Image" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0085,
@@ -476653,7 +507834,7 @@ This work contains a number of TREND-seq datasets investigating transcriptome-wi
     sc:url "http://trend.evobionet.com/" .
 
 <https://bio.tools/trendbreaker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0769,
@@ -476667,7 +507848,7 @@ This work contains a number of TREND-seq datasets investigating transcriptome-wi
     sc:url "https://github.com/reconhub/trendbreaker" .
 
 <https://bio.tools/trendcatcher> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Workbench" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -476686,14 +507867,14 @@ This work contains a number of TREND-seq datasets investigating transcriptome-wi
 
 <https://bio.tools/trendsceek> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Gene expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ] ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_2032" ;
+            sc:name "Gene expression data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Gene expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_2058" ;
+            sc:name "Gene expression data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0607,
@@ -476714,7 +507895,7 @@ This work contains a number of TREND-seq datasets investigating transcriptome-wi
     biotools:primaryContact "Daniel Edsgärd" .
 
 <https://bio.tools/trendy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3170 ;
     sc:citation <https://doi.org/10.1101/185413> ;
@@ -476731,7 +507912,7 @@ This work contains a number of TREND-seq datasets investigating transcriptome-wi
     biotools:primaryContact "Rhonda Bacher" .
 
 <https://bio.tools/treq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0654,
@@ -476745,7 +507926,7 @@ This work contains a number of TREND-seq datasets investigating transcriptome-wi
     sc:url "http://sourceforge.net/p/treq/home/Home/" .
 
 <https://bio.tools/treqcg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
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@@ -476760,7 +507941,7 @@ This work contains a number of TREND-seq datasets investigating transcriptome-wi
     sc:url "http://bioinformatics.rutgers.edu/Software/TreqCG/" .
 
 <https://bio.tools/tres> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0199 ;
     sc:citation "pubmed:26137847" ;
@@ -476772,7 +507953,7 @@ This work contains a number of TREND-seq datasets investigating transcriptome-wi
     biotools:primaryContact "Ioannis Kavakiotis" .
 
 <https://bio.tools/trespex> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_3053,
@@ -476788,7 +507969,7 @@ This work contains a number of TREND-seq datasets investigating transcriptome-wi
     sc:url "http://annelida.de/research/bioinformatics/software/index.html" .
 
 <https://bio.tools/tress> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3295,
@@ -476808,7 +507989,7 @@ This work contains a number of TREND-seq datasets investigating transcriptome-wi
     sc:url "https://bioconductor.org/packages/release/bioc/html/TRESS.html" .
 
 <https://bio.tools/trex> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_0621,
         edam:topic_3382,
@@ -476828,7 +508009,7 @@ This work contains a number of TREND-seq datasets investigating transcriptome-wi
     sc:url "http://trex.run" .
 
 <https://bio.tools/trf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -476846,7 +508027,7 @@ This work contains a number of TREND-seq datasets investigating transcriptome-wi
     sc:url "http://tandem.bu.edu/trf/trf.html" .
 
 <https://bio.tools/trfdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
         edam:topic_0659,
@@ -476864,7 +508045,7 @@ tRFs are 14-32 base long single-stranded RNA derived from mature or precursor tR
     sc:url "http://genome.bioch.virginia.edu/trfdb/" .
 
 <https://bio.tools/trfolder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0097,
@@ -476883,7 +508064,7 @@ tRFs are 14-32 base long single-stranded RNA derived from mature or precursor tR
     sc:url "http://rna-informatics.uga.edu/?f=software&p=TRFolder" .
 
 <https://bio.tools/trftar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0659,
         edam:topic_3794 ;
@@ -476897,7 +508078,7 @@ tRFs are 14-32 base long single-stranded RNA derived from mature or precursor tR
     sc:url "http://www.rnanut.net/tRFTar/" .
 
 <https://bio.tools/trftars> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0659,
@@ -476913,7 +508094,7 @@ tRFs are 14-32 base long single-stranded RNA derived from mature or precursor tR
     sc:url "http://trftars.cmuzhenninglab.org:3838/tar/" .
 
 <https://bio.tools/triadsim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0602,
@@ -476937,7 +508118,7 @@ Simulate genotypes for case-parent triads, case-control, and quantitative trait
     sc:url "https://cran.r-project.org/web/packages/TriadSim/index.html" .
 
 <https://bio.tools/triage> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0621,
         edam:topic_0622,
@@ -476957,7 +508138,7 @@ The Throughput Ranking by Iterative Analysis of Genomic Enrichment (TRIAGE) plat
     sc:url "https://triage.niaid.nih.gov" .
 
 <https://bio.tools/triagetools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654,
@@ -476973,7 +508154,7 @@ The Throughput Ranking by Iterative Analysis of Genomic Enrichment (TRIAGE) plat
     sc:url "http://sourceforge.net/projects/triagetools/" .
 
 <https://bio.tools/trial_designed> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_2640,
         edam:topic_3360,
@@ -476989,7 +508170,7 @@ The Throughput Ranking by Iterative Analysis of Genomic Enrichment (TRIAGE) plat
     sc:url "http://www.trialdesign.org" .
 
 <https://bio.tools/triangular-mesh-converter-matlab-nastran> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -477005,7 +508186,7 @@ The Throughput Ranking by Iterative Analysis of Genomic Enrichment (TRIAGE) plat
     biotools:primaryContact "Sergey Makarov" .
 
 <https://bio.tools/tric> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -477020,7 +508201,7 @@ The Throughput Ranking by Iterative Analysis of Genomic Enrichment (TRIAGE) plat
     sc:url "http://proteomics.ethz.ch/tric/" .
 
 <https://bio.tools/tric-cancer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2640,
         edam:topic_3170 ;
@@ -477035,14 +508216,13 @@ The Throughput Ranking by Iterative Analysis of Genomic Enrichment (TRIAGE) plat
 
 <https://bio.tools/trichdb> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2295" ;
-            sc:name "Gene ID" ;
-            sc:sameAs "http://edamontology.org/data_2295" ] ;
+            sc:additionalType "http://edamontology.org/data_2295" ;
+            sc:name "Gene ID" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0916" ;
-            sc:name "Gene report" ;
-            sc:sameAs "http://edamontology.org/data_0916" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0916" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Gene report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0621 ;
     sc:citation <https://doi.org/10.1093/nar/gkn631>,
@@ -477059,26 +508239,26 @@ The Throughput Ranking by Iterative Analysis of Genomic Enrichment (TRIAGE) plat
 
 <https://bio.tools/tricolor> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1383" ;
-            sc:name "Nucleic acid sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_1383" ],
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Nucleic acid sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ] ;
+            sc:additionalType "http://edamontology.org/data_1383" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Nucleic acid sequence alignment" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ],
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Sequence variations" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ],
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence features" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2012" ;
-            sc:name "Sequence coordinates" ;
-            sc:sameAs "http://edamontology.org/data_2012" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2012" ;
+            sc:encodingFormat "http://edamontology.org/format_3003" ;
+            sc:name "Sequence coordinates" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Bioinformatics portal" ;
     sc:applicationSubCategory edam:topic_0157 ;
     sc:author <https://orcid.org/0000-0002-8735-8093> ;
@@ -477095,7 +508275,7 @@ The Throughput Ranking by Iterative Analysis of Genomic Enrichment (TRIAGE) plat
     sc:url "https://github.com/davidebolo1993/TRiCoLOR" .
 
 <https://bio.tools/tricycle> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3170,
@@ -477113,7 +508293,7 @@ The Throughput Ranking by Iterative Analysis of Genomic Enrichment (TRIAGE) plat
     biotools:primaryContact "Loyal A. Goff" .
 
 <https://bio.tools/trid> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
         edam:topic_0634,
@@ -477131,7 +508311,7 @@ Calculation of gene TRID weights from a gene expression matrix.""" ;
     sc:url "https://github.com/shannjiang/TRID" .
 
 <https://bio.tools/tridamp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0154,
@@ -477146,8 +508326,43 @@ Calculation of gene TRID weights from a gene expression matrix.""" ;
     sc:softwareHelp <http://mathdamp.iab.keio.ac.jp/tridamp/overview/> ;
     sc:url "http://mathdamp.iab.keio.ac.jp/tridamp/" .
 
+<https://bio.tools/trifid> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_0954" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Database cross-mapping" ] ;
+    bsc:output [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_0954" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Database cross-mapping" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script",
+        "Workflow" ;
+    sc:applicationSubCategory edam:topic_0080,
+        edam:topic_3320,
+        edam:topic_3512 ;
+    sc:author <https://orcid.org/0000-0001-9046-6370> ;
+    sc:citation <https://doi.org/10.1093/nargab/lqab044>,
+        "pmcid:PMC8140736",
+        "pubmed:34046593" ;
+    sc:contributor <https://orcid.org/0000-0001-9046-6370> ;
+    sc:description "TRIFID is an ML-based tool trained on the evidence of large-scale proteomics analysis and evolutionary, structural, annotation, splicing, and RNA-seq based features to classify the biologically important splice isoforms." ;
+    sc:featureList edam:operation_0361,
+        edam:operation_0362,
+        edam:operation_3225,
+        edam:operation_3672 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "TRIFID" ;
+    sc:operatingSystem "Linux",
+        "Mac" ;
+    sc:softwareHelp <https://gitlab.com/bu_cnio/trifid#2-installation-instructions> ;
+    sc:softwareVersion "1.0.0" ;
+    sc:url "https://gitlab.com/bu_cnio/trifid" ;
+    biotools:primaryContact <https://orcid.org/0000-0001-7688-6045> .
+
 <https://bio.tools/trifle> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3056 ;
@@ -477164,26 +508379,23 @@ Calculation of gene TRID weights from a gene expression matrix.""" ;
 
 <https://bio.tools/triforc> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1233" ;
-            sc:name "Sequence set (protein)" ;
-            sc:sameAs "http://edamontology.org/data_1233" ],
+            sc:additionalType "http://edamontology.org/data_1234" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence set (nucleic acid)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1234" ;
-            sc:name "Sequence set (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1234" ],
+            sc:additionalType "http://edamontology.org/data_1233" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence set (protein)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1463" ;
-            sc:name "Small molecule structure" ;
-            sc:sameAs "http://edamontology.org/data_1463" ] ;
+            sc:additionalType "http://edamontology.org/data_1463" ;
+            sc:name "Small molecule structure" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0962" ;
-            sc:name "Small molecule report" ;
-            sc:sameAs "http://edamontology.org/data_0962" ],
+            sc:additionalType "http://edamontology.org/data_0962" ;
+            sc:name "Small molecule report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2955" ;
-            sc:name "Sequence report" ;
-            sc:sameAs "http://edamontology.org/data_2955" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2955" ;
+            sc:name "Sequence report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0209,
         edam:topic_0602,
@@ -477205,7 +508417,7 @@ Calculation of gene TRID weights from a gene expression matrix.""" ;
     biotools:primaryContact "Alain Goossens" .
 
 <https://bio.tools/triform> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0749,
@@ -477230,14 +508442,14 @@ Calculation of gene TRID weights from a gene expression matrix.""" ;
 
 <https://bio.tools/trifusion> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0850" ;
-            sc:name "Sequence set" ;
-            sc:sameAs "http://edamontology.org/data_0850" ] ;
+            sc:additionalType "http://edamontology.org/data_0850" ;
+            sc:encodingFormat "http://edamontology.org/format_1949" ;
+            sc:name "Sequence set" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0850" ;
-            sc:name "Sequence set" ;
-            sc:sameAs "http://edamontology.org/data_0850" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0850" ;
+            sc:encodingFormat "http://edamontology.org/format_1961" ;
+            sc:name "Sequence set" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0194,
@@ -477264,7 +508476,7 @@ Calculation of gene TRID weights from a gene expression matrix.""" ;
     biotools:primaryContact "Diogo Silva" .
 
 <https://bio.tools/trigger> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0602,
@@ -477287,7 +508499,7 @@ Calculation of gene TRID weights from a gene expression matrix.""" ;
     biotools:primaryContact "John D. Storey" .
 
 <https://bio.tools/triku> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0089,
@@ -477306,7 +508518,7 @@ Feature selection is a relevant step in the analysis of single-cell RNA sequenci
     sc:url "https://gitlab.com/alexmascension/triku" .
 
 <https://bio.tools/trilonet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0602,
@@ -477322,7 +508534,7 @@ Feature selection is a relevant step in the analysis of single-cell RNA sequenci
     sc:url "https://www.uea.ac.uk/computing/TriLoNet" .
 
 <https://bio.tools/trim_galore> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:description "A wrapper tool around Cutadapt and FastQC to consistently apply quality and adapter trimming to FastQ files, with some extra functionality for MspI-digested RRBS-type (Reduced Representation Bisufite-Seq) libraries." ;
@@ -477336,18 +508548,18 @@ Feature selection is a relevant step in the analysis of single-cell RNA sequenci
 
 <https://bio.tools/trimadaptor> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3168,
@@ -477368,18 +508580,17 @@ Feature selection is a relevant step in the analysis of single-cell RNA sequenci
 
 <https://bio.tools/trimal> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:name "Sequence alignment" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ],
+            sc:additionalType "http://edamontology.org/data_1916" ;
+            sc:encodingFormat "http://edamontology.org/format_1998" ;
+            sc:name "Alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1916" ;
-            sc:name "Alignment" ;
-            sc:sameAs "http://edamontology.org/data_1916" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0160,
@@ -477399,14 +508610,12 @@ Feature selection is a relevant step in the analysis of single-cell RNA sequenci
 
 <https://bio.tools/trimest> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2887" ;
-            sc:name "Nucleic acid sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2887" ] ;
+            sc:additionalType "http://edamontology.org/data_2887" ;
+            sc:name "Nucleic acid sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2887" ;
-            sc:name "Nucleic acid sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2887" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2887" ;
+            sc:name "Nucleic acid sequence record" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3511 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -477439,22 +508648,22 @@ Feature selection is a relevant step in the analysis of single-cell RNA sequenci
 
 <https://bio.tools/trimmomatic> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1933" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3168,
@@ -477471,7 +508680,7 @@ Feature selection is a relevant step in the analysis of single-cell RNA sequenci
     biotools:primaryContact "Anthony Bolger" .
 
 <https://bio.tools/trimnet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3300,
         edam:topic_3336,
@@ -477491,14 +508700,12 @@ TrimNet can accurately complete multiple molecular properties prediction tasks w
 
 <https://bio.tools/trimseq> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -477530,22 +508737,22 @@ TrimNet can accurately complete multiple molecular properties prediction tasks w
 
 <https://bio.tools/trimsequences> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3168 ;
@@ -477564,14 +508771,12 @@ TrimNet can accurately complete multiple molecular properties prediction tasks w
 
 <https://bio.tools/trimspace> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:name "Report" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -477601,7 +508806,7 @@ TrimNet can accurately complete multiple molecular properties prediction tasks w
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/trimspace.html" .
 
 <https://bio.tools/trinculo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0634,
@@ -477617,12 +508822,17 @@ TrimNet can accurately complete multiple molecular properties prediction tasks w
     sc:url "https://sourceforge.net/projects/trinculo/" .
 
 <https://bio.tools/trinity> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3308,
         edam:topic_3512 ;
-    sc:citation "pubmed:21572440" ;
+    sc:citation <https://doi.org/10.1038/nbt.1883>,
+        <https://doi.org/10.1038/nprot.2013.084>,
+        "pmcid:PMC3571712",
+        "pmcid:PMC3875132",
+        "pubmed:21572440",
+        "pubmed:23845962" ;
     sc:description "Trinity is a transcriptome assembler which relies on three different tools, inchworm an assembler, chrysalis which pools contigs and butterfly which amongst others compacts a graph resulting from butterfly with reads." ;
     sc:featureList edam:operation_3258 ;
     sc:name "Trinity" ;
@@ -477633,7 +508843,7 @@ TrimNet can accurately complete multiple molecular properties prediction tasks w
         "Nir Friedman" .
 
 <https://bio.tools/trinotate> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Suite" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -477648,7 +508858,7 @@ TrimNet can accurately complete multiple molecular properties prediction tasks w
     sc:url "https://github.com/Trinotate/Trinotate.github.io" .
 
 <https://bio.tools/trio> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0199,
@@ -477671,7 +508881,7 @@ TrimNet can accurately complete multiple molecular properties prediction tasks w
     biotools:primaryContact "Holger Schwender" .
 
 <https://bio.tools/triocaller> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3053,
@@ -477688,7 +508898,7 @@ TrimNet can accurately complete multiple molecular properties prediction tasks w
         "Wei Chen" .
 
 <https://bio.tools/triocnv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_3053,
@@ -477702,7 +508912,7 @@ TrimNet can accurately complete multiple molecular properties prediction tasks w
     sc:url "https://github.com/yongzhuang/TrioCNV" .
 
 <https://bio.tools/triocnv2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
@@ -477725,7 +508935,7 @@ TrimNet can accurately complete multiple molecular properties prediction tasks w
     sc:url "https://github.com/yongzhuang/TrioCNV2" .
 
 <https://bio.tools/triodenovo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_2533,
@@ -477739,8 +508949,31 @@ TrimNet can accurately complete multiple molecular properties prediction tasks w
     sc:softwareHelp <https://genome.sph.umich.edu/wiki/Triodenovo> ;
     sc:url "http://genome.sph.umich.edu/wiki/Triodenovo" .
 
+<https://bio.tools/triophaser> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0199,
+        edam:topic_0622,
+        edam:topic_3055,
+        edam:topic_3168 ;
+    sc:citation <https://doi.org/10.1186/S12859-021-04470-4>,
+        "pmcid:PMC8607709",
+        "pubmed:34809557" ;
+    sc:description "Using Mendelian inheritance logic to improve genomic phasing of trios" ;
+    sc:featureList edam:operation_0487,
+        edam:operation_3196,
+        edam:operation_3435,
+        edam:operation_3454 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "trioPhaser" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/dmiller903/trioPhaser" .
+
 <https://bio.tools/triovis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3168,
         edam:topic_3676 ;
@@ -477756,7 +508989,7 @@ TrimNet can accurately complete multiple molecular properties prediction tasks w
     sc:url "http://www.bytebucket.org/vda-lab/triovis/wiki/Home" .
 
 <https://bio.tools/trip> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0128,
@@ -477778,7 +509011,7 @@ TrimNet can accurately complete multiple molecular properties prediction tasks w
         "Ju-Hong Jeon" .
 
 <https://bio.tools/trip-Drosophila> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0621,
         edam:topic_3512,
@@ -477791,7 +509024,7 @@ TrimNet can accurately complete multiple molecular properties prediction tasks w
     sc:url "https://fgr.hms.harvard.edu/trip-in-vivo-fly-rnai" .
 
 <https://bio.tools/tripal> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3053 ;
@@ -477809,7 +509042,7 @@ TrimNet can accurately complete multiple molecular properties prediction tasks w
     biotools:primaryContact "Support Forum" .
 
 <https://bio.tools/tripal-eutils> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
         edam:topic_0621,
@@ -477837,7 +509070,7 @@ This record is maintained by: bcondon ORCID , spficklin , mestato.""" ;
     sc:url "https://github.com/NAL-i5K/tripal_eutils" .
 
 <https://bio.tools/tripal-galaxy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3489,
         edam:topic_3810 ;
@@ -477855,7 +509088,7 @@ This record is maintained by: bcondon ORCID , spficklin , mestato.""" ;
     sc:url "https://github.com/tripal/tripal_galaxy" .
 
 <https://bio.tools/tripal-megasearch> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0203,
@@ -477876,7 +509109,7 @@ This record is maintained by: bcondon ORCID , spficklin , mestato.""" ;
     biotools:primaryContact <https://orcid.org/0000-0003-3968-2769> .
 
 <https://bio.tools/tripal_elasticsearch> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_3071,
         edam:topic_3489 ;
@@ -477894,8 +509127,55 @@ This record is maintained by: bcondon ORCID , spficklin , mestato.""" ;
     sc:url "https://github.com/tripal/tripal_elasticsearch" ;
     biotools:primaryContact "Margaret Staton" .
 
+<https://bio.tools/tripepsvm> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
+    bsc:output [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_0989" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Protein identifier" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1772" ;
+            sc:name "Score" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0128 ;
+    sc:description "Predict RNA binding proteins from sequences using string kernel SVMs." ;
+    sc:featureList edam:operation_1777 ;
+    sc:isAccessibleForFree true ;
+    sc:name "TriPepSVM" ;
+    sc:operatingSystem "Linux",
+        "Mac" ;
+    sc:url "https://github.com/marsicoLab/TriPepSVM" .
+
+<https://bio.tools/tripletgo> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0089,
+        edam:topic_0203,
+        edam:topic_0621,
+        edam:topic_3512,
+        edam:topic_3518 ;
+    sc:citation <https://doi.org/10.1101/2021.11.25.470058> ;
+    sc:description "TripletGO is an algorithm for predicting Gene Ontology (GO) of genes. It consists of four pipelines to detect GO terms through (1) expression profile similarity based on triplet network, (2) genetic sequence alignment, (3) protein sequence alignment, and (4) naïve probability. The final function insights are a combination of the four pipelines through neural network" ;
+    sc:featureList edam:operation_0314,
+        edam:operation_2436,
+        edam:operation_3672 ;
+    sc:isAccessibleForFree true ;
+    sc:name "TripletGO" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://zhanglab.ccmb.med.umich.edu/TripletGO/" .
+
 <https://bio.tools/tripletres> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0130,
         edam:topic_0736,
@@ -477916,7 +509196,7 @@ TripletRes is a method for protein inter-residue contact prediction. For a query
     sc:url "https://zhanglab.ccmb.med.umich.edu/TripletRes/" .
 
 <https://bio.tools/triplex> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -477940,7 +509220,7 @@ TripletRes is a method for protein inter-residue contact prediction. For a query
     biotools:primaryContact <http://orcid.org/0000-0002-3321-9629> .
 
 <https://bio.tools/triplexfpp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0654,
         edam:topic_0659,
@@ -477962,38 +509242,38 @@ TriplexFPP is an integrated program for DNA:RNA triplex prediction. It contains
 
 <https://bio.tools/triplexrna> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2342" ;
-            sc:name "Pathway or network name" ;
-            sc:sameAs "http://edamontology.org/data_2342" ],
+            sc:additionalType "http://edamontology.org/data_2342" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Pathway or network name" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2909" ;
-            sc:name "Organism name" ;
-            sc:sameAs "http://edamontology.org/data_2909" ],
+            sc:additionalType "http://edamontology.org/data_2909" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Organism name" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2355" ;
-            sc:name "RNA family identifier" ;
-            sc:sameAs "http://edamontology.org/data_2355" ],
+            sc:additionalType "http://edamontology.org/data_2299" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Gene name" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2299" ;
-            sc:name "Gene name" ;
-            sc:sameAs "http://edamontology.org/data_2299" ] ;
+            sc:additionalType "http://edamontology.org/data_2355" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "RNA family identifier" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2080" ;
-            sc:name "Database search results" ;
-            sc:sameAs "http://edamontology.org/data_2080" ],
+            sc:additionalType "http://edamontology.org/data_2166" ;
+            sc:encodingFormat "http://edamontology.org/format_3604" ;
+            sc:name "Sequence composition plot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ],
+            sc:additionalType "http://edamontology.org/data_2080" ;
+            sc:encodingFormat "http://edamontology.org/format_3464" ;
+            sc:name "Database search results" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2166" ;
-            sc:name "Sequence composition plot" ;
-            sc:sameAs "http://edamontology.org/data_2166" ],
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:encodingFormat "http://edamontology.org/format_3603" ;
+            sc:name "Pathway or network" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2140" ;
-            sc:name "Concentration" ;
-            sc:sameAs "http://edamontology.org/data_2140" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2140" ;
+            sc:encodingFormat "http://edamontology.org/format_3603" ;
+            sc:name "Concentration" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web API" ;
     sc:applicationSubCategory edam:topic_0099,
@@ -478014,8 +509294,49 @@ TriplexFPP is an integrated program for DNA:RNA triplex prediction. It contains
     sc:url "https://triplexrna.org" ;
     biotools:primaryContact "Andrea Bagnacani" .
 
+<https://bio.tools/tripr> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_2830 ;
+    sc:citation <https://doi.org/10.1186/s12859-020-03669-1>,
+        "pmcid:PMC7525938",
+        "pubmed:32993478" ;
+    sc:description "T-cell Receptor/Immunoglobulin Profiler (TRIP)" ;
+    sc:featureList edam:operation_2403 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "tripr" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://www.bioconductor.org/packages/devel/bioc/manuals/tripr/man/tripr.pdf> ;
+    sc:softwareVersion "1.0" ;
+    sc:url "https://github.com/BiodataAnalysisGroup/TRIP" ;
+    biotools:primaryContact <https://orcid.org/0000-0002-0222-4273> .
+
+<https://bio.tools/tripvote> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0194,
+        edam:topic_3053,
+        edam:topic_3293 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAB875>,
+        "pubmed:34978565" ;
+    sc:description "Completing Gene Trees Without Species Trees in Sub-quadratic Time." ;
+    sc:featureList edam:operation_0544,
+        edam:operation_0553,
+        edam:operation_3478,
+        edam:operation_3942 ;
+    sc:isAccessibleForFree true ;
+    sc:license "LGPL-3.0" ;
+    sc:name "tripVote" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/uym2/tripVote" .
+
 <https://bio.tools/triti-map> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0085,
@@ -478036,7 +509357,7 @@ Triti-Map could efficiently explore trait-related genes or functional elements n
     sc:url "https://github.com/fei0810/Triti-Map" .
 
 <https://bio.tools/triticeaetoolbox> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_3055,
         edam:topic_3298,
@@ -478053,14 +509374,12 @@ Triti-Map could efficiently explore trait-related genes or functional elements n
 
 <https://bio.tools/triton> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1759" ;
-            sc:name "PDB model number" ;
-            sc:sameAs "http://edamontology.org/data_1759" ] ;
+            sc:additionalType "http://edamontology.org/data_1759" ;
+            sc:name "PDB model number" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3332 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btn344> ;
@@ -478081,7 +509400,7 @@ Triti-Map could efficiently explore trait-related genes or functional elements n
     biotools:primaryContact "Martin Prokop" .
 
 <https://bio.tools/tritrypdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_3500 ;
@@ -478100,7 +509419,7 @@ Triti-Map could efficiently explore trait-related genes or functional elements n
     biotools:primaryContact "TriTrypDB Contact Form" .
 
 <https://bio.tools/trlnc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_0749,
         edam:topic_3169,
@@ -478117,20 +509436,8 @@ Long noncoding RNAs (lncRNAs) have been proven to play important roles in transc
     sc:name "TRlnc" ;
     sc:url "http://bio.licpathway.net/TRlnc" .
 
-<https://bio.tools/trmB> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0108,
-        edam:topic_0749,
-        edam:topic_3512 ;
-    sc:citation <https://doi.org/10.1093/NAR/GKZ702>,
-        "pmcid:PMC6755087",
-        "pubmed:31428787" ;
-    sc:description "> MEDIUM CONFIDENCE! | > HOMEPAGE MISSING! | > CORRECT NAME OF TOOL COULD ALSO BE 'katA katB', 'katB' | tRNA m7G46 methyltransferase, plays a role in hydrogen peroxide resistance and positively modulates the translation of katA and katB mRNAs in Pseudomonas aeruginosa | Cellular response to oxidative stress is a crucial mechanism that promotes the survival of Pseudomonas aeruginosa during infection. However, the translational regulation of oxidative stress response remains largely unknown. Here, we reveal a tRNA modification-mediated translational response to H2O2 in P. aeruginosa. We demonstrated that the P. aeruginosa trmB gene encodes a tRNA guanine (46)-N7-methyltransferase that catalyzes the formation of m7G46 in the tRNA variable loop. Twenty-three tRNA substrates of TrmB with a guanosine residue at position 46 were identified, including 11 novel tRNA substrates. We showed that loss of trmB had a strong negative effect on the translation of Phe- and Asp-enriched mRNAs" ;
-    sc:featureList edam:operation_3501 ;
-    sc:name "trmB" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31428787" .
-
 <https://bio.tools/trnadb-ce> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0219,
@@ -478148,8 +509455,24 @@ Long noncoding RNAs (lncRNAs) have been proven to play important roles in transc
     sc:url "http://trna.nagahama-i-bio.ac.jp" ;
     biotools:primaryContact "tRNADB-CE Support" .
 
+<https://bio.tools/trnamod> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:citation <https://doi.org/10.1186/1471-2105-15-326>,
+        "pmcid:PMC4287530",
+        "pubmed:25272949" ;
+    sc:description "The tRNAmod is a web-server for the prediction of transfer RNA (tRNA) modifications. Post-transcriptional modifications of tRNA plays a major role in their functionality." ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "trnamod" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/trnamod/index.html> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/trnamod/index.html" .
+
 <https://bio.tools/trnamodpred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0099,
@@ -478167,12 +509490,15 @@ Long noncoding RNAs (lncRNAs) have been proven to play important roles in transc
         "Magdalena Machnicka" .
 
 <https://bio.tools/trnascan-se> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0099,
         edam:topic_0622 ;
-    sc:citation "pubmed:27174935" ;
+    sc:citation <https://doi.org/10.1093/nar/25.5.955>,
+        "pmcid:PMC146525",
+        "pubmed:27174935",
+        "pubmed:9023104" ;
     sc:description "A program for improved detection of transfer RNA genes in genomic sequence." ;
     sc:featureList edam:operation_0253,
         edam:operation_0464 ;
@@ -478184,7 +509510,7 @@ Long noncoding RNAs (lncRNAs) have been proven to play important roles in transc
     sc:url "http://trna.ucsc.edu/tRNAscan-SE/" .
 
 <https://bio.tools/trnascanimport> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070 ;
     sc:description "The package imports the result of tRNAscan-SE as a GRanges object." ;
@@ -478200,8 +509526,30 @@ Long noncoding RNAs (lncRNAs) have been proven to play important roles in transc
     sc:url "http://bioconductor.org/packages/release/bioc/html/tRNAscanImport.html" ;
     biotools:primaryContact "Felix GM Ernst" .
 
+<https://bio.tools/trnastudio> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0659,
+        edam:topic_3170,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC198>,
+        "pubmed:35389452" ;
+    sc:description "tRNAstudio is a tool designed to analyze small RNA-seq datasets (single-end or paired-end data) in order to characterize tRNAs. It includes a specific mapping workflow and extracts information on tRNA gene expression (DESeq2 and Iso-tRNA-CP), classification of sequencing reads likely derived from precursor tRNAs (pre-tRNAs) or mature tRNAs (processed tRNAs), tRNA gene sequence coverage, and post-transcriptional tRNA modification levels." ;
+    sc:featureList edam:operation_0464,
+        edam:operation_2939,
+        edam:operation_3185,
+        edam:operation_3192,
+        edam:operation_3891 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "tRNAstudio" ;
+    sc:operatingSystem "Linux",
+        "Mac" ;
+    sc:url "https://github.com/GeneTranslationLab-IRB/tRNAstudio" .
+
 <https://bio.tools/trod> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0654,
@@ -478221,7 +509569,7 @@ Long noncoding RNAs (lncRNAs) have been proven to play important roles in transc
     biotools:primaryContact "Support" .
 
 <https://bio.tools/trom> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3293,
@@ -478241,7 +509589,7 @@ Long noncoding RNAs (lncRNAs) have been proven to play important roles in transc
     biotools:primaryContact "Jingyi Jessica Li" .
 
 <https://bio.tools/tromer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3308 ;
@@ -478256,7 +509604,7 @@ Long noncoding RNAs (lncRNAs) have been proven to play important roles in transc
     biotools:primaryContact "TromER Helpdesk" .
 
 <https://bio.tools/tronco> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3168 ;
@@ -478279,26 +509627,8 @@ Long noncoding RNAs (lncRNAs) have been proven to play important roles in transc
     sc:url "https://sites.google.com/site/troncopackage/" ;
     biotools:primaryContact "Marco Antoniotti" .
 
-<https://bio.tools/trophic> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0621,
-        edam:topic_2269 ;
-    sc:citation <https://doi.org/10.7287/PEERJ.PREPRINTS.1319V2>,
-        <https://doi.org/10.7287/PEERJ.PREPRINTS.1319V3> ;
-    sc:description """Modelling lake trophic state.
-
-Hollister, J. W., W. B . Milstead, B. J. Kreakie. (2016). Modeling Lake Trophic State: A Random Forest Approach. Ecosphere 7:3 10.1002/ecs2.1321.
-
-This repository contains all the materials needed to reproduce Hollister et al. (2015) Modeling Lake Trophic State: A Random Forest Approach. These materials are presented as an R Package which contains code used for analyses, code used to develop figures, raw data used for all analysese, and a package vignette that contains the accepted, unformatted version of the manuscript.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'Modelling lake trophic state', 'trophic state', 'universally', 'situ'""" ;
-    sc:featureList edam:operation_0451,
-        edam:operation_0452,
-        edam:operation_3659 ;
-    sc:name "trophic" ;
-    sc:url "https://github.com/USEPA/LakeTrophicModelling" .
-
 <https://bio.tools/trowel> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3168,
@@ -478311,8 +509641,59 @@ This repository contains all the materials needed to reproduce Hollister et al.
     sc:softwareHelp <https://sourceforge.net/projects/trowel-ec/> ;
     sc:url "http://sourceforge.net/projects/trowel-ec/" .
 
+<https://bio.tools/trpnet> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0602,
+        edam:topic_3172,
+        edam:topic_3407,
+        edam:topic_3697 ;
+    sc:citation <https://doi.org/10.3390/METABO12010010>,
+        "pmcid:PMC8777792",
+        "pubmed:35050132" ;
+    sc:description "TrpNet is a comprehensive resource for researchers to visually explore, search, or predict tryptophan metabolism within the context of human and mouse gut microbiome." ;
+    sc:featureList edam:operation_3660,
+        edam:operation_3891,
+        edam:operation_3929 ;
+    sc:isAccessibleForFree true ;
+    sc:name "TrpNet" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://www.trpnet.ca" .
+
+<https://bio.tools/trrosetta> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:name "Protein sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0082,
+        edam:topic_0130,
+        edam:topic_0154,
+        edam:topic_0736,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1002/advs.202102592>,
+        <https://doi.org/10.1038/S41596-021-00628-9>,
+        "pmcid:PMC8693034",
+        "pubmed:34719864",
+        "pubmed:34759384" ;
+    sc:description "trRosetta is an algorithm for fast and accurate protein structure prediction." ;
+    sc:featureList edam:operation_0267,
+        edam:operation_0303,
+        edam:operation_0474,
+        edam:operation_2476,
+        edam:operation_3927 ;
+    sc:isAccessibleForFree true ;
+    sc:name "trRosetta" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://yanglab.nankai.edu.cn/trRosetta/" .
+
 <https://bio.tools/trtools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0769,
         edam:topic_2885 ;
@@ -478328,7 +509709,7 @@ TRTools includes a variety of utilities for filtering, quality control and analy
     sc:url "https://github.com/gymreklab/TRTools" .
 
 <https://bio.tools/truhmm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0196,
@@ -478344,7 +509725,7 @@ TRTools includes a variety of utilities for filtering, quality control and analy
     sc:url "http://bioinfolab.uncc.edu/TruHmm_package/" .
 
 <https://bio.tools/trumicount> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3168,
         edam:topic_3170,
@@ -478360,7 +509741,7 @@ TRTools includes a variety of utilities for filtering, quality control and analy
     biotools:primaryContact "Florian G Pflug" .
 
 <https://bio.tools/trumpet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3168,
@@ -478381,7 +509762,7 @@ TRTools includes a variety of utilities for filtering, quality control and analy
     biotools:primaryContact "Teng Zhang" .
 
 <https://bio.tools/trust> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -478397,7 +509778,7 @@ TRTools includes a variety of utilities for filtering, quality control and analy
     sc:url "http://www.ibi.vu.nl/programs/trustwww/" .
 
 <https://bio.tools/trust4> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0203,
@@ -478415,7 +509796,7 @@ TRTools includes a variety of utilities for filtering, quality control and analy
     biotools:primaryContact <https://orcid.org/0000-0003-4736-7339> .
 
 <https://bio.tools/trvae> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -478440,7 +509821,7 @@ All datasets are available in this drive directory.""" ;
     sc:url "http://github.com/theislab/trvae" .
 
 <https://bio.tools/trycycler> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0622,
@@ -478464,7 +509845,7 @@ All datasets are available in this drive directory.""" ;
     sc:url "http://github.com/rrwick/Trycycler-paper" .
 
 <https://bio.tools/trypindb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3047,
         edam:topic_3068 ;
@@ -478479,7 +509860,7 @@ TrypInDB is a searchable online resource of small molecule inhibitors having a v
     sc:url "http://trypindb.biomedinformri.com/" .
 
 <https://bio.tools/ts> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0625,
         edam:topic_0634,
@@ -478504,7 +509885,7 @@ tpc -p 1000 -i toy_samples.txt -t traitmatrix.txt -n 1 -o p_values.txt.""" ;
     sc:url "https://github.com/Jianjun-CN/c-code-for-TS" .
 
 <https://bio.tools/ts4msbh> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3168 ;
@@ -478514,24 +509895,8 @@ tpc -p 1000 -i toy_samples.txt -t traitmatrix.txt -n 1 -o p_values.txt.""" ;
     sc:operatingSystem "Windows" ;
     sc:url "http://bio.cs.put.poznan.pl/programs/519227aa9dfb895744000001" .
 
-<https://bio.tools/tsMSQ> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0593,
-        edam:topic_0820,
-        edam:topic_2229 ;
-    sc:citation <https://doi.org/10.1016/J.BPJ.2019.11.020>,
-        "pubmed:31839257" ;
-    sc:description """Identifying Heteroprotein Complexes in the Nuclear Envelope.
-
-The nucleus is delineated by the nuclear envelope (NE), which is a double membrane barrier composed of the inner and outer nuclear membranes as well as a ∼40-nm wide lumen. In addition to its barrier function, the NE acts as a critical signaling node for a variety of cellular processes, which are mediated by protein complexes within this subcellular compartment. Although fluorescence fluctuation spectroscopy is a powerful tool for characterizing protein complexes in living cells, it was recently demonstrated that conventional fluorescence fluctuation spectroscopy methods are not suitable for applications in the NE because of the presence of slow nuclear membrane undulations.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'DC tsMSQ', 'DC'""" ;
-    sc:name "tsMSQ" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31839257" .
-
 <https://bio.tools/tscan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -478553,7 +509918,7 @@ The nucleus is delineated by the nuclear envelope (NE), which is a double membra
     biotools:primaryContact "Zhicheng Ji" .
 
 <https://bio.tools/tsebra> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0621,
@@ -478573,7 +509938,7 @@ The nucleus is delineated by the nuclear envelope (NE), which is a double membra
     sc:url "https://github.com/Gaius-Augustus/TSEBRA" .
 
 <https://bio.tools/tsema> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0128,
@@ -478597,7 +509962,7 @@ The nucleus is delineated by the nuclear envelope (NE), which is a double membra
     biotools:primaryContact "Jose Maria González-Izarzugaza" .
 
 <https://bio.tools/tseta> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
         edam:topic_2885,
@@ -478615,7 +509980,7 @@ The nucleus is delineated by the nuclear envelope (NE), which is a double membra
     sc:url "http://github.com/labASIMBTFWang/TSETA" .
 
 <https://bio.tools/tsfm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_0749,
@@ -478632,7 +509997,7 @@ The nucleus is delineated by the nuclear envelope (NE), which is a double membra
         "David H Ardell" .
 
 <https://bio.tools/tsir> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3324,
         edam:topic_3474 ;
@@ -478648,7 +510013,7 @@ The nucleus is delineated by the nuclear envelope (NE), which is a double membra
     biotools:primaryContact "Alexander D. Becker" .
 
 <https://bio.tools/tsis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0099,
@@ -478665,7 +510030,7 @@ The nucleus is delineated by the nuclear envelope (NE), which is a double membra
     biotools:primaryContact "Runxuan Zhang" .
 
 <https://bio.tools/tsm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3500 ;
@@ -478679,8 +510044,29 @@ The nucleus is delineated by the nuclear envelope (NE), which is a double membra
     sc:softwareHelp <https://zygurt.github.io/TSM/> ;
     sc:url "https://www.github.com/zygurt/TSM" .
 
+<https://bio.tools/tsmda> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0634,
+        edam:topic_0659,
+        edam:topic_2640,
+        edam:topic_3335,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1016/J.OMTN.2021.08.016>,
+        "pmcid:PMC8479276",
+        "pubmed:34631283" ;
+    sc:description "Target and symptom-based computational model for miRNA-disease-association prediction." ;
+    sc:featureList edam:operation_0463,
+        edam:operation_3792 ;
+    sc:isAccessibleForFree true ;
+    sc:name "TSMDA" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://biosig.unimelb.edu.au/tsmda/" .
+
 <https://bio.tools/tsminer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -478706,7 +510092,7 @@ TSMiner provides a network map with extensive interactive visualization operatio
     sc:url "https://github.com/free1234hm/tsminer-tool.git" .
 
 <https://bio.tools/tsnad> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
@@ -478733,8 +510119,32 @@ TSMiner provides a network map with extensive interactive visualization operatio
         "Windows" ;
     sc:url "http://biopharm.zju.edu.cn/tsnad/" .
 
+<https://bio.tools/tsnapred> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0128,
+        edam:topic_0154,
+        edam:topic_0659,
+        edam:topic_3511,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.1093/BIB/BBAC244>,
+        "pubmed:35753699" ;
+    sc:description "Predicting type-specific nucleic acid binding residues via an ensemble approach." ;
+    sc:featureList edam:operation_0415,
+        edam:operation_0420,
+        edam:operation_3900,
+        edam:operation_3901,
+        edam:operation_4009 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "TSNAPred" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/niewenjuan-csu/TSNAPred" .
+
 <https://bio.tools/tsni> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -478750,7 +510160,7 @@ TSMiner provides a network map with extensive interactive visualization operatio
     sc:url "http://dibernardo.tigem.it/softwares/time-series-network-identification-tsni" .
 
 <https://bio.tools/tsnp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2269,
         edam:topic_3379 ;
@@ -478765,7 +510175,7 @@ R code for simulation and trial implementation of the TSNP design.""" ;
     sc:url "https://github.com/yongzang2020/TSNP" .
 
 <https://bio.tools/tspair> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0199,
@@ -478787,7 +510197,7 @@ R code for simulation and trial implementation of the TSNP design.""" ;
     biotools:primaryContact "Jeffrey T. Leek" .
 
 <https://bio.tools/tspex> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3170,
         edam:topic_3512 ;
@@ -478802,7 +510212,7 @@ tspex is a tool that allows easy computation of a variety of tissue-specificity
     sc:url "https://apcamargo.github.io/tspex/" .
 
 <https://bio.tools/tspmap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0622,
@@ -478820,7 +510230,7 @@ tspex is a tool that allows easy computation of a variety of tissue-specificity
     biotools:primaryContact "J. Grey Monroe" .
 
 <https://bio.tools/tsportnet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0102,
@@ -478834,8 +510244,21 @@ tspex is a tool that allows easy computation of a variety of tissue-specificity
     sc:name "TSPORTNet" ;
     sc:url "https://github.com/liuyi1989/TSPORTNet" .
 
+<https://bio.tools/tsppred> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:description "This server allows you to predict the 3D structure of proteins from its amino acid sequence. Its based upon a composite approach, incorporating homology and ab-inito based methods." ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "tsppred" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/tsppred/> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/tsppred/" .
+
 <https://bio.tools/tspred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -478862,7 +510285,7 @@ tspex is a tool that allows easy computation of a variety of tissue-specificity
     biotools:primaryContact "COSPI Support" .
 
 <https://bio.tools/tsptfbs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0128,
@@ -478880,7 +510303,7 @@ tspex is a tool that allows easy computation of a variety of tissue-specificity
     sc:url "https://github.com/liulifenyf/TSPTFBS" .
 
 <https://bio.tools/tsrbase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0621,
         edam:topic_0659,
@@ -478897,7 +510320,7 @@ The tsRBase is a comprehensive database of tsRNA sequence, expression features a
     sc:url "http://www.tsrbase.org" .
 
 <https://bio.tools/tsrchitect> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0085,
         edam:topic_0203,
@@ -478917,7 +510340,7 @@ The tsRBase is a comprehensive database of tsRNA sequence, expression features a
     biotools:primaryContact "R. Taylor Raborn" .
 
 <https://bio.tools/tsrexplorer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0634,
@@ -478939,8 +510362,30 @@ The tsRBase is a comprehensive database of tsRNA sequence, expression features a
         "Windows" ;
     sc:url "https://zentnerlab.github.io/TSRexploreR/index.html" .
 
+<https://bio.tools/tsrfun> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0659,
+        edam:topic_2640,
+        edam:topic_3170,
+        edam:topic_3308,
+        edam:topic_3794 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAB1023>,
+        "pmcid:PMC8728237",
+        "pubmed:34755848" ;
+    sc:description "A comprehensive platform for decoding human tsRNA expression, functions and prognostic value by high-throughput small RNA-Seq and CLIP-Seq data." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_2436,
+        edam:operation_3680 ;
+    sc:isAccessibleForFree true ;
+    sc:name "tsRFun" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://rna.sysu.edu.cn/tsRFun/" .
+
 <https://bio.tools/tsrnasearch> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0203,
@@ -478965,7 +510410,7 @@ The tsRBase is a comprehensive database of tsRNA sequence, expression features a
     sc:url "https://github.com/GiantSpaceRobot/tsRNAsearch" .
 
 <https://bio.tools/tssar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Web application" ;
     sc:applicationSubCategory edam:topic_3168,
@@ -478986,7 +510431,7 @@ The tsRBase is a comprehensive database of tsRNA sequence, expression features a
     biotools:primaryContact "Support" .
 
 <https://bio.tools/tsser> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0749,
@@ -479002,7 +510447,7 @@ The tsRBase is a comprehensive database of tsRNA sequence, expression features a
     sc:url "http://www.clipz.unibas.ch/downloads/TSSer/index.php" .
 
 <https://bio.tools/tssfinder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0621,
         edam:topic_0749,
@@ -479021,7 +510466,7 @@ The tsRBase is a comprehensive database of tsRNA sequence, expression features a
     biotools:primaryContact "Alan Mitchell Durham" .
 
 <https://bio.tools/tssi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -479042,8 +510487,59 @@ The tsRBase is a comprehensive database of tsRNA sequence, expression features a
     sc:url "http://bioconductor.org/packages/release/bioc/html/TSSi.html" ;
     biotools:primaryContact "Julian Gehring" .
 
+<https://bio.tools/tsspredator> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_3005" ;
+            sc:name "Expression data" ] ;
+    bsc:output [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2371" ;
+            sc:name "ASTD ID (tss)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Desktop application" ;
+    sc:applicationSubCategory edam:topic_0749,
+        edam:topic_3170 ;
+    sc:citation <https://doi.org/10.1371/journal.pgen.1003495>,
+        "pmcid:PMC3656092",
+        "pubmed:23696746" ;
+    sc:description "TSSpredator, a Java program for the automated detection and classification of TSS from RNA-seq data. TSSpredator reads RNA-seq data in the form of simple wiggle files and performs a genome wide comparative prediction of TSS, for example between different growth conditions." ;
+    sc:featureList edam:operation_0438,
+        edam:operation_2454,
+        edam:operation_3208 ;
+    sc:isAccessibleForFree true ;
+    sc:name "TSSpredator" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://itnc.informatik.uni-tuebingen.de/index.php/s/J9fQjSdc2JWpCFx>,
+        <https://tsspredator20-rtd.readthedocs.io/en/latest/index.html> ;
+    sc:url "https://uni-tuebingen.de/fakultaeten/mathematisch-naturwissenschaftliche-fakultaet/fachbereiche/informatik/lehrstuehle/integrative-transkriptomik/software/tsspredator" .
+
+<https://bio.tools/tssr> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0621,
+        edam:topic_0749,
+        edam:topic_3170,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.1093/NARGAB/LQAB108>,
+        "pmcid:PMC8598296",
+        "pubmed:34805991" ;
+    sc:description "An R package for comprehensive analyses of TSS sequencing data." ;
+    sc:featureList edam:operation_2422,
+        edam:operation_2939,
+        edam:operation_3799,
+        edam:operation_3891 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "TSSr" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/Linlab-slu/TSSr" .
+
 <https://bio.tools/tssv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3053,
@@ -479059,7 +510555,7 @@ The tsRBase is a comprehensive database of tsRNA sequence, expression features a
     sc:url "https://git.lumc.nl/j.f.j.laros/tssv/blob/master/README.md" .
 
 <https://bio.tools/tsvr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_0780,
         edam:topic_3810 ;
@@ -479069,7 +510565,7 @@ The tsRBase is a comprehensive database of tsRNA sequence, expression features a
     sc:url "https://github.com/reumandc/tsvr" .
 
 <https://bio.tools/tt-mars> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0199,
@@ -479088,7 +510584,7 @@ The tsRBase is a comprehensive database of tsRNA sequence, expression features a
     sc:url "https://github.com/ChaissonLab/TT-Mars.git" .
 
 <https://bio.tools/ttd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0209,
@@ -479109,7 +510605,7 @@ The tsRBase is a comprehensive database of tsRNA sequence, expression features a
     biotools:primaryContact "Feng Zhu" .
 
 <https://bio.tools/ttd-bidd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0202,
         edam:topic_0659,
@@ -479125,7 +510621,7 @@ The tsRBase is a comprehensive database of tsRNA sequence, expression features a
     sc:url "http://db.idrblab.net/ttd/" .
 
 <https://bio.tools/ttmap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3518 ;
     sc:description "It is a clustering method that groups together samples with the same deviation in comparison to a control group. It is specially useful when the data is small. It is parameter free." ;
@@ -479144,7 +510640,7 @@ The tsRBase is a comprehensive database of tsRNA sequence, expression features a
     biotools:primaryContact "Rachel Jeitziner" .
 
 <https://bio.tools/tts_mapping> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0654,
@@ -479161,7 +510657,7 @@ The tsRBase is a comprehensive database of tsRNA sequence, expression features a
     sc:url "http://ggeda.bii.a-star.edu.sg/~piroonj/TTS_mapping/TTS_mapping.php" .
 
 <https://bio.tools/ttsurv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -479188,7 +510684,7 @@ The tsRBase is a comprehensive database of tsRNA sequence, expression features a
     sc:url "http://www.bio-server.cn/TTSurv" .
 
 <https://bio.tools/ttt-eeg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0611,
         edam:topic_3304,
         edam:topic_3379 ;
@@ -479200,14 +510696,13 @@ The tsRBase is a comprehensive database of tsRNA sequence, expression features a
 
 <https://bio.tools/tuberculist> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1097" ;
-            sc:name "Sequence accession (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1097" ] ;
+            sc:additionalType "http://edamontology.org/data_1097" ;
+            sc:name "Sequence accession (nucleic acid)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0916" ;
-            sc:name "Gene report" ;
-            sc:sameAs "http://edamontology.org/data_0916" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0916" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Gene report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0621 ;
     sc:citation <https://doi.org/10.1016/j.tube.2010.09.008>,
@@ -479222,7 +510717,7 @@ The tsRBase is a comprehensive database of tsRNA sequence, expression features a
     sc:url "http://genolist.pasteur.fr/TubercuList/" .
 
 <https://bio.tools/tuberq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0209 ;
@@ -479237,8 +510732,31 @@ The tsRBase is a comprehensive database of tsRNA sequence, expression features a
     sc:softwareVersion "1.4.3" ;
     sc:url "http://tuberq.proteinq.com.ar/" .
 
+<https://bio.tools/tucuxi-blast> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_2885,
+        edam:topic_3174,
+        edam:topic_3305,
+        edam:topic_3489 ;
+    sc:citation <https://doi.org/10.7717/PEERJ.13507>,
+        "pmcid:PMC9281601",
+        "pubmed:35846888" ;
+    sc:description "Enabling fast and accurate record linkage of large-scale health-related administrative databases through a DNA-encoded approach." ;
+    sc:featureList edam:operation_2421,
+        edam:operation_2422,
+        edam:operation_3432 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "Tucuxi-BLAST" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/csbl-br/tucuxi_blast" .
+
 <https://bio.tools/tugda> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3474,
         edam:topic_3577 ;
@@ -479251,7 +510769,7 @@ The tsRBase is a comprehensive database of tsRNA sequence, expression features a
     sc:url "https://github.com/CSB5/TUGDA" .
 
 <https://bio.tools/tuiuiu> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1186/1748-7188-4-3> ;
@@ -479266,8 +510784,43 @@ The tsRBase is a comprehensive database of tsRNA sequence, expression features a
     sc:url "http://training.genouest.org/claroline/claroline/learnPath/learningPathList.php?cidReset=true&cidReq=TUIUIU" ;
     biotools:primaryContact "Support" .
 
+<https://bio.tools/tume> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0199,
+        edam:topic_2640,
+        edam:topic_3299,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1101/2021.11.22.469566> ;
+    sc:description "Inferring ongoing cancer evolution from single tumour biopsies using synthetic supervised learning." ;
+    sc:featureList edam:operation_3625,
+        edam:operation_3629 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "TumE" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/tomouellette/TumE" .
+
+<https://bio.tools/tumorhope> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:citation <https://doi.org/10.1371/journal.pone.0035187>,
+        "pmcid:PMC3327652",
+        "pubmed:22523575" ;
+    sc:description "TumorHoPe is a manually curated comprehensive database containing 744 entries of experimentally characterized tumor homing peptides." ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "tumorhope" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/tumorhope/index.php> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/tumorhope/index.php" .
+
 <https://bio.tools/tumorhpd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0128,
@@ -479281,10 +510834,10 @@ The tsRBase is a comprehensive database of tsRNA sequence, expression features a
         "Mac",
         "Windows" ;
     sc:softwareHelp <http://crdd.osdd.net/raghava/tumorhpd/help.php> ;
-    sc:url "http://crdd.osdd.net/raghava/tumorhpd/" .
+    sc:url "http://webs.iiitd.edu.in/raghava/tumorhpd/" .
 
 <https://bio.tools/tumour-progression-simulation> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2229,
@@ -479301,7 +510854,7 @@ The tsRBase is a comprehensive database of tsRNA sequence, expression features a
     sc:url "https://github.com/mustonen-group/contrasting-cytotoxic-cytostatic" .
 
 <https://bio.tools/tupdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0160,
@@ -479320,7 +510873,7 @@ The tsRBase is a comprehensive database of tsRNA sequence, expression features a
         "Jian Huang" .
 
 <https://bio.tools/turbonorm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -479343,7 +510896,7 @@ The tsRBase is a comprehensive database of tsRNA sequence, expression features a
     biotools:primaryContact "Maarten van Iterson" .
 
 <https://bio.tools/turf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0625,
@@ -479360,7 +510913,7 @@ The tsRBase is a comprehensive database of tsRNA sequence, expression features a
     biotools:primaryContact <https://orcid.org/0000-0002-2081-1105> .
 
 <https://bio.tools/turf-e> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2259,
@@ -479376,7 +510929,7 @@ The tsRBase is a comprehensive database of tsRNA sequence, expression features a
     sc:url "https://code.google.com/p/ensemble-of-filters/" .
 
 <https://bio.tools/tuxnet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0602,
         edam:topic_0659,
@@ -479400,7 +510953,7 @@ To install, run TuxNet-MacStandaloneInstaller.app in the TuxNet-MacStandalone di
     sc:url "https://rspurney.github.io/TuxNet/" .
 
 <https://bio.tools/tvscript> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0203,
@@ -479418,14 +510971,14 @@ To install, run TuxNet-MacStandaloneInstaller.app in the TuxNet-MacStandalone di
 
 <https://bio.tools/tvt_viewer> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3712" ;
+            sc:name "Mass spectrometry spectra" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3603" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3572 ;
@@ -479445,7 +510998,7 @@ To install, run TuxNet-MacStandaloneInstaller.app in the TuxNet-MacStandalone di
         "Joao Paulo" .
 
 <https://bio.tools/tvtb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -479470,7 +511023,7 @@ To install, run TuxNet-MacStandaloneInstaller.app in the TuxNet-MacStandalone di
     biotools:primaryContact "Kevin Rue-Albrecht" .
 
 <https://bio.tools/twadn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0128,
         edam:topic_3299,
@@ -479488,7 +511041,7 @@ Time wrapping algorithm for aligning dynamic networks.""" ;
     sc:url "https://github.com/screamer/twadn" .
 
 <https://bio.tools/tweedeseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -479513,7 +511066,7 @@ Time wrapping algorithm for aligning dynamic networks.""" ;
     biotools:primaryContact "Juan R Gonzalez" .
 
 <https://bio.tools/tweedieverse> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2269,
@@ -479535,8 +511088,29 @@ Time wrapping algorithm for aligning dynamic networks.""" ;
         "Shrabanti Chowdhury",
         "Stephanie C. Hicks" .
 
+<https://bio.tools/tweezepy> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0593,
+        edam:topic_3315,
+        edam:topic_3372,
+        edam:topic_3520 ;
+    sc:citation <https://doi.org/10.1371/JOURNAL.PONE.0262028>,
+        "pmcid:PMC8719779",
+        "pubmed:34972160" ;
+    sc:description "A Python package for calibrating forces in single-molecule video-tracking experiments." ;
+    sc:featureList edam:operation_0244,
+        edam:operation_3435 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "Tweezepy" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/ianlmorgan/tweezepy" .
+
 <https://bio.tools/twigs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0634,
@@ -479552,7 +511126,7 @@ Time wrapping algorithm for aligning dynamic networks.""" ;
     sc:url "http://acgt.cs.tau.ac.il/twigs/" .
 
 <https://bio.tools/twilight> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -479574,7 +511148,7 @@ Time wrapping algorithm for aligning dynamic networks.""" ;
     biotools:primaryContact "Stefanie Scheid" .
 
 <https://bio.tools/twilight-ligand> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0128,
@@ -479590,8 +511164,32 @@ Time wrapping algorithm for aligning dynamic networks.""" ;
     sc:softwareHelp <http://www.ruppweb.org/twilight/Readme.htm> ;
     sc:url "http://www.ruppweb.org/twilight/default.htm" .
 
+<https://bio.tools/twincons> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0097,
+        edam:topic_0659,
+        edam:topic_2229,
+        edam:topic_3315,
+        edam:topic_3944 ;
+    sc:citation <https://doi.org/10.1371/JOURNAL.PCBI.1009541>,
+        "pmcid:PMC8580257",
+        "pubmed:34714829" ;
+    sc:description "Analysis toolkit for two sequence groups within an MSA." ;
+    sc:featureList edam:operation_0292,
+        edam:operation_0323,
+        edam:operation_0448,
+        edam:operation_0510 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "TwinCons" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/LDWLab/TwinCons" .
+
 <https://bio.tools/twinscan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
@@ -479610,7 +511208,7 @@ Time wrapping algorithm for aligning dynamic networks.""" ;
     biotools:primaryContact "Michael Brent" .
 
 <https://bio.tools/twistranscript> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0114,
         edam:topic_0621,
         edam:topic_0749 ;
@@ -479627,7 +511225,7 @@ This package aims at simulating the Transcription-Supercoiling Coupling (TSC) an
     sc:url "https://github.com/sammeyer2017/TwisTranscripT" .
 
 <https://bio.tools/two-sigma> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2229,
         edam:topic_3170,
@@ -479644,13 +511242,13 @@ twosigma is an R package for differential expression (DE) analysis and gene set
     sc:url "https://github.com/edvanburen/twosigma" .
 
 <https://bio.tools/twobitinfo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "get information about sequences in a .2bit file" ;
     sc:name "twobitinfo" ;
     sc:url "http://hgdownload.cse.ucsc.edu/admin/exe/" .
 
 <https://bio.tools/twoddpcr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0154 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btx308>,
@@ -479671,14 +511269,12 @@ twosigma is an R package for differential expression (DE) analysis and gene set
 
 <https://bio.tools/twofeat> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:name "Sequence features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0160 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -479708,7 +511304,7 @@ twosigma is an R package for differential expression (DE) analysis and gene set
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/twofeat.html" .
 
 <https://bio.tools/twoloc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3053,
@@ -479722,7 +511318,7 @@ twosigma is an R package for differential expression (DE) analysis and gene set
     sc:url "http://www.well.ox.ac.uk/~mfarrall/twoloc.htm" .
 
 <https://bio.tools/tximeta> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3170,
         edam:topic_3308 ;
@@ -479736,7 +511332,7 @@ twosigma is an R package for differential expression (DE) analysis and gene set
     sc:url "https://bioconductor.org/packages/tximeta" .
 
 <https://bio.tools/tximport> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0769,
@@ -479760,7 +511356,7 @@ twosigma is an R package for differential expression (DE) analysis and gene set
     biotools:primaryContact <http://orcid.org/0000-0001-8401-0545> .
 
 <https://bio.tools/txreginfra> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0622 ;
     sc:description "This package provides interfaces to genomic metadata employed in regulatory network creation, with a focus on noSQL solutions. Currently quantitative representations of eQTLs, DnaseI hypersensitivity sites and digital genomic footprints are assembled using an out-of-memory extension of the RaggedExperiment API." ;
@@ -479777,14 +511373,13 @@ twosigma is an R package for differential expression (DE) analysis and gene set
 
 <https://bio.tools/tyler> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1772" ;
-            sc:name "Score" ;
-            sc:sameAs "http://edamontology.org/data_1772" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1772" ;
+            sc:name "Score" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -479804,7 +511399,7 @@ twosigma is an R package for differential expression (DE) analysis and gene set
     sc:url "http://www.inforstation.com/webservers/TYLER/" .
 
 <https://bio.tools/tyna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0602,
@@ -479822,7 +511417,7 @@ twosigma is an R package for differential expression (DE) analysis and gene set
     sc:url "http://tyna.gersteinlab.org/tyna/" .
 
 <https://bio.tools/typeinfo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0769 ;
@@ -479842,7 +511437,7 @@ twosigma is an R package for differential expression (DE) analysis and gene set
     biotools:primaryContact "Duncan Temple Lang" .
 
 <https://bio.tools/typhon> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0097,
@@ -479856,7 +511451,7 @@ twosigma is an R package for differential expression (DE) analysis and gene set
     sc:url "http://ai.stanford.edu/~flannick/typhon/" .
 
 <https://bio.tools/tysserand> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3383 ;
     sc:citation <https://doi.org/10.1101/2020.11.16.385377> ;
@@ -479866,8 +511461,28 @@ twosigma is an R package for differential expression (DE) analysis and gene set
     sc:name "tysserand" ;
     sc:url "https://github.com/VeraPancaldiLab/tysserand" .
 
+<https://bio.tools/tyto> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0089,
+        edam:topic_3071,
+        edam:topic_3895 ;
+    sc:citation <https://doi.org/10.1021/ACSSYNBIO.1C00450>,
+        "pubmed:35226470" ;
+    sc:description "A Python Tool Enabling Better Annotation Practices for Synthetic Biology Data-Sharing." ;
+    sc:featureList edam:operation_0362,
+        edam:operation_0558,
+        edam:operation_3435 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Apache-2.0" ;
+    sc:name "Tyto" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/SynBioDex/tyto" .
+
 <https://bio.tools/u-ANT> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3263,
         edam:topic_3489 ;
     sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTZ792>,
@@ -479877,29 +511492,8 @@ twosigma is an R package for differential expression (DE) analysis and gene set
     sc:name "u-ANT" ;
     sc:url "https://github.com/CrisesUrv/microaggregation-based_anonymization_tool." .
 
-<https://bio.tools/u-can-act_platform> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0610,
-        edam:topic_3068,
-        edam:topic_3077 ;
-    sc:citation <https://doi.org/10.3389/FPSYG.2019.01808>,
-        "pmcid:PMC6764284",
-        "pubmed:31616330" ;
-    sc:description """A Tool to Study Intra-individual Processes of Early School Leaving and Its Prevention Using Multiple Informants.
-
-u-can-act – Voorkom voortijdig schoolverlaten.
-
-Inzichten vanuit de wetenschap richten zich tot nu toe voornamelijk op groepsrisicofactoren van schooluitval, wij willen inzicht geven in individuele processen.
-
-Wij ontdekken de werkzame ingrediënten van effectieve jongerenbegeleiding door zowel begeleiders als jongeren gedurende een langere tijd te volgen. Hiermee helpen wij begeleidingsinitiatieven om hun begeleiding te professionaliseren en te verbeteren.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'u-can-act'""" ;
-    sc:featureList edam:operation_3283,
-        edam:operation_3436 ;
-    sc:name "u-can-act platform" ;
-    sc:url "http://u-can-act.com" .
-
 <https://bio.tools/u-infuse> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3050,
         edam:topic_3382,
         edam:topic_3474 ;
@@ -479913,7 +511507,7 @@ Wij ontdekken de werkzame ingrediënten van effectieve jongerenbegeleiding door
     sc:url "https://github.com/u-infuse/u-infuse" .
 
 <https://bio.tools/u-shape3D> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0166,
         edam:topic_0749,
         edam:topic_3382 ;
@@ -479928,7 +511522,7 @@ Wij ontdekken de werkzame ingrediënten van effectieve jongerenbegeleiding door
     sc:url "https://github.com/DanuserLab/u-shape3D" .
 
 <https://bio.tools/u2fusion> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_3382 ;
     sc:citation <https://doi.org/10.1109/TPAMI.2020.3012548>,
@@ -479942,7 +511536,7 @@ Code of U2Fusion: a unified unsupervised image fusion network for multiple image
     sc:url "https://github.com/hanna-xu/U2Fusion" .
 
 <https://bio.tools/uORF-Tools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0769,
         edam:topic_3512 ;
@@ -479956,7 +511550,7 @@ Code of U2Fusion: a unified unsupervised image fusion network for multiple image
     sc:url "https://github.com/Biochemistry1-FFM/uORF-Tools" .
 
 <https://bio.tools/uROCcomp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:description "Compare two unpaired ROC curves." ;
     sc:isAccessibleForFree true ;
@@ -479970,7 +511564,7 @@ Code of U2Fusion: a unified unsupervised image fusion network for multiple image
     biotools:primaryContact "Giuseppe Cardillo" .
 
 <https://bio.tools/uap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0203,
         edam:topic_0769,
@@ -479990,7 +511584,7 @@ The uap package is a framework to configure, run, and control large data multi-s
     sc:url "https://github.com/yigbt/uap" .
 
 <https://bio.tools/uastools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0780,
         edam:topic_3810 ;
@@ -480002,7 +511596,7 @@ The uap package is a framework to configure, run, and control large data multi-s
     sc:url "https://github.com/andersst91/UAStools" .
 
 <https://bio.tools/ub-isap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0781,
@@ -480021,7 +511615,7 @@ The uap package is a framework to configure, run, and control large data multi-s
     biotools:primaryContact "Atul Kamboj" .
 
 <https://bio.tools/ubcg2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0194,
         edam:topic_0769,
         edam:topic_3293 ;
@@ -480037,8 +511631,32 @@ The uap package is a framework to configure, run, and control large data multi-s
     sc:url "http://leb.snu.ac.kr/ubcg2" ;
     biotools:primaryContact "Jongsik Chun" .
 
+<https://bio.tools/ube3-apa> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0080,
+        edam:topic_0121,
+        edam:topic_0602,
+        edam:topic_2229,
+        edam:topic_3520 ;
+    sc:citation <https://doi.org/10.1093/bioinformatics/btac069>,
+        "pmcid:PMC9004656",
+        "pubmed:35139152" ;
+    sc:description "A Bioinformatic Strategy to Elucidate Ubiquitin E3 Ligase Activities in Quantitative Proteomics Study." ;
+    sc:featureList edam:operation_0417,
+        edam:operation_3435,
+        edam:operation_3501,
+        edam:operation_3799 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "UbE3-APA" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/Chenlab-UMN/Ub-E3-ligase-Activity-Profiling-Analysis" .
+
 <https://bio.tools/ubin> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0637,
         edam:topic_0749,
@@ -480055,7 +511673,7 @@ The uap package is a framework to configure, run, and control large data multi-s
     sc:url "https://github.com/ProbstLab/uBin" .
 
 <https://bio.tools/ubine> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0602,
@@ -480074,7 +511692,7 @@ The uap package is a framework to configure, run, and control large data multi-s
     biotools:primaryContact "Lee TY" .
 
 <https://bio.tools/ubisite> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0601,
@@ -480093,7 +511711,7 @@ The uap package is a framework to configure, run, and control large data multi-s
     biotools:primaryContact "Support" .
 
 <https://bio.tools/ubpred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_2814,
@@ -480109,7 +511727,7 @@ The uap package is a framework to configure, run, and control large data multi-s
     sc:url "http://www.ubpred.org/" .
 
 <https://bio.tools/uc2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_2229,
         edam:topic_3382 ;
@@ -480122,7 +511740,7 @@ The uap package is a framework to configure, run, and control large data multi-s
     sc:url "https://github.com/bionanoimaging/UC2-GIT" .
 
 <https://bio.tools/ucarechemsuitecli> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0202,
@@ -480142,8 +511760,32 @@ The uap package is a framework to configure, run, and control large data multi-s
         "Windows" ;
     sc:url "https://sauravsaha.shinyapps.io/ucarechemsuite2/" .
 
+<https://bio.tools/uceasy> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0091,
+        edam:topic_0194,
+        edam:topic_0196,
+        edam:topic_0769,
+        edam:topic_3293 ;
+    sc:citation <https://doi.org/10.3897/BDJ.9.E78132>,
+        "pmcid:PMC8683391",
+        "pubmed:34934383" ;
+    sc:description "A software package for automating and simplifying the analysis of ultraconserved elements (UCEs)." ;
+    sc:featureList edam:operation_0310,
+        edam:operation_0323,
+        edam:operation_3192 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "UCEasy" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://github.com/uceasy/uceasy/wiki> ;
+    sc:url "https://github.com/uceasy/uceasy" .
+
 <https://bio.tools/ucell> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3053 ;
@@ -480156,7 +511798,7 @@ The uap package is a framework to configure, run, and control large data multi-s
     biotools:primaryContact <https://orcid.org/0000-0002-2495-0671> .
 
 <https://bio.tools/ucl_servers> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0130,
@@ -480179,7 +511821,7 @@ The uap package is a framework to configure, run, and control large data multi-s
     biotools:primaryContact "K. Bryson" .
 
 <https://bio.tools/ucl_web_services> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:description "This tool has multiple functions, including: Protein Structure Prediction, Protein Sequence Analysis, Genome Analysis, Protein Structure Classification, Transmembrane Protein Modelling." ;
@@ -480193,7 +511835,7 @@ The uap package is a framework to configure, run, and control large data multi-s
     sc:url "http://bioinf.cs.ucl.ac.uk/web_servers/web_services/" .
 
 <https://bio.tools/ucph_covid19_dashboard> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0781,
@@ -480216,7 +511858,7 @@ The uap package is a framework to configure, run, and control large data multi-s
         "Phillip Bredahl Mogensen" .
 
 <https://bio.tools/ucsc-genome-browser> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
         edam:topic_0621,
@@ -480241,7 +511883,7 @@ All tables in the Genome Browser are freely usable for any purpose except as ind
     sc:url "https://hgdownload.soe.ucsc.edu/downloads.html#gbdb" .
 
 <https://bio.tools/ucsc_cancer_genomics_browser> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0622,
@@ -480265,7 +511907,7 @@ All tables in the Genome Browser are freely usable for any purpose except as ind
         "Genomics Browser Forum" .
 
 <https://bio.tools/ucsc_genome_browser> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -480274,15 +511916,40 @@ All tables in the Genome Browser are freely usable for any purpose except as ind
         edam:topic_0625,
         edam:topic_3325,
         edam:topic_3366 ;
-    sc:citation <https://doi.org/10.1093/nar/gkp939>,
+    sc:citation <https://doi.org/10.1093/nar/gkg129>,
+        <https://doi.org/10.1093/nar/gkj144>,
+        <https://doi.org/10.1093/nar/gkm966>,
+        <https://doi.org/10.1093/nar/gkn875>,
+        <https://doi.org/10.1093/nar/gkp939>,
+        <https://doi.org/10.1093/nar/gkq963>,
         <https://doi.org/10.1093/nar/gkr1012>,
         <https://doi.org/10.1093/nar/gkr1055>,
+        <https://doi.org/10.1093/nar/gks1048>,
+        <https://doi.org/10.1093/nar/gkt1168>,
+        <https://doi.org/10.1093/nar/gku1177>,
+        <https://doi.org/10.1093/nar/gkv1275>,
+        <https://doi.org/10.1093/nar/gkw1134>,
+        <https://doi.org/10.1093/nar/gky1095>,
+        <https://doi.org/10.1101/gr.229102>,
+        "pmcid:PMC186604",
         "pmcid:PMC2808870",
         "pmcid:PMC3245018",
         "pmcid:PMC3245183",
+        "pubmed:12045153",
+        "pubmed:12519945",
+        "pubmed:16381938",
+        "pubmed:18086701",
+        "pubmed:18996895",
         "pubmed:19906737",
+        "pubmed:20959295",
         "pubmed:22075998",
-        "pubmed:22086951" ;
+        "pubmed:22086951",
+        "pubmed:23155063",
+        "pubmed:24270787",
+        "pubmed:25428374",
+        "pubmed:26590259",
+        "pubmed:27899642",
+        "pubmed:30407534" ;
     sc:description "Large database of publicly available sequence and annotation data along with an integrated tool set for examining and comparing the genomes of organisms, aligning sequence to genomes, and displaying and sharing users own annotation data." ;
     sc:featureList edam:operation_0292,
         edam:operation_0308,
@@ -480300,7 +511967,7 @@ All tables in the Genome Browser are freely usable for any purpose except as ind
     biotools:primaryContact "Brooke Rhead" .
 
 <https://bio.tools/ucsc_interaction_browser> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0203,
@@ -480320,7 +511987,7 @@ All tables in the Genome Browser are freely usable for any purpose except as ind
     sc:url "http://sysbio.soe.ucsc.edu/nets" .
 
 <https://bio.tools/ucscxenashiny> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_2640,
         edam:topic_3071 ;
@@ -480339,7 +512006,7 @@ Provides a web app for downloading, analyzing and visualizing datasets from UCSC
     sc:url "https://github.com/openbiox/UCSCXenaShiny" .
 
 <https://bio.tools/ucscxenatools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_2640 ;
@@ -480356,7 +512023,7 @@ Provides a web app for downloading, analyzing and visualizing datasets from UCSC
     sc:url "https://github.com/ropensci/UCSCXenaTools" .
 
 <https://bio.tools/udsmprot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0154,
         edam:topic_0218,
@@ -480373,7 +512040,7 @@ Provides a web app for downloading, analyzing and visualizing datasets from UCSC
     sc:url "https://github.com/nstrodt/UDSMProt" .
 
 <https://bio.tools/uemtomaton> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0611,
         edam:topic_0632,
         edam:topic_3318 ;
@@ -480386,14 +512053,14 @@ Automation framework for conducting ultrafast electron microscopy experiments. T
 
 <https://bio.tools/uep> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2877" ;
-            sc:name "Protein complex" ;
-            sc:sameAs "http://edamontology.org/data_2877" ] ;
+            sc:additionalType "http://edamontology.org/data_2877" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein complex" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2856" ;
-            sc:name "Structural distance matrix" ;
-            sc:sameAs "http://edamontology.org/data_2856" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2856" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Structural distance matrix" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_2814 ;
@@ -480410,13 +512077,16 @@ Automation framework for conducting ultrafast electron microscopy experiments. T
     sc:url "https://github.com/pepamengual/UEP" .
 
 <https://bio.tools/ufboot2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3293,
         edam:topic_3299 ;
-    sc:citation <https://doi.org/10.1093/molbev/msx281>,
+    sc:citation <https://doi.org/10.1093/molbev/mst024>,
+        <https://doi.org/10.1093/molbev/msx281>,
+        "pmcid:PMC3670741",
         "pmcid:PMC5850222",
+        "pubmed:23418397",
         "pubmed:29077904" ;
     sc:description "Improving the Ultrafast Bootstrap Approximation." ;
     sc:featureList edam:operation_0324 ;
@@ -480428,8 +512098,28 @@ Automation framework for conducting ultrafast electron microscopy experiments. T
     sc:url "http://www.iqtree.org/" ;
     biotools:primaryContact "Le Sy Vinh" .
 
+<https://bio.tools/ufloss> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_2815,
+        edam:topic_3444,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1002/MRM.29227>,
+        "pubmed:35373388" ;
+    sc:description "High fidelity deep learning-based MRI reconstruction with instance-wise discriminative feature matching loss." ;
+    sc:featureList edam:operation_3435,
+        edam:operation_3443,
+        edam:operation_3799 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "UFLoss" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/mikgroup/UFLoss" .
+
 <https://bio.tools/ufo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0128,
         edam:topic_0625,
@@ -480446,7 +512136,7 @@ Automation framework for conducting ultrafast electron microscopy experiments. T
     sc:url "http://apps.cytoscape.org/apps/ufo" .
 
 <https://bio.tools/ufold> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0097,
         edam:topic_0659,
@@ -480464,7 +512154,7 @@ Abstract For many RNA molecules, the secondary structure is essential for the co
     sc:url "https://ufold.ics.uci.edu/" .
 
 <https://bio.tools/ugahash> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3053,
@@ -480480,7 +512170,7 @@ Abstract For many RNA molecules, the secondary structure is essential for the co
     sc:url "http://ugahash.uni-frankfurt.de/" .
 
 <https://bio.tools/ugene> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0622,
@@ -480498,7 +512188,7 @@ Abstract For many RNA molecules, the secondary structure is essential for the co
     biotools:primaryContact "UGENE Tech Support" .
 
 <https://bio.tools/uicluster> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0114 ;
@@ -480514,7 +512204,7 @@ Abstract For many RNA molecules, the secondary structure is essential for the co
     sc:url "https://genome.uiowa.edu/home.old/pubsoft/clustering/index.html" .
 
 <https://bio.tools/uidendrogram> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3070,
@@ -480532,7 +512222,7 @@ Abstract For many RNA molecules, the secondary structure is essential for the co
     biotools:primaryContact "Malcolm McLean" .
 
 <https://bio.tools/uitagcreator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0114,
         edam:topic_3053 ;
@@ -480545,7 +512235,7 @@ Abstract For many RNA molecules, the secondary structure is essential for the co
     sc:url "https://genome.uiowa.edu/home.old/pubsoft/software.html" .
 
 <https://bio.tools/uk-biobank> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0625,
@@ -480565,8 +512255,46 @@ Helix UK Biobank browser.""" ;
     sc:name "UK Biobank" ;
     sc:url "https://ukb.research.helix.com" .
 
+<https://bio.tools/uk-reach> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web service" ;
+    sc:applicationSubCategory edam:topic_3305,
+        edam:topic_3324,
+        edam:topic_3337,
+        edam:topic_3379,
+        edam:topic_3419 ;
+    sc:citation <https://doi.org/10.1101/2022.01.19.22268871> ;
+    sc:description "The United Kingdom Research study into Ethnicity And COVID-19 outcomes in Healthcare workers (UK-REACH)." ;
+    sc:featureList edam:operation_3799 ;
+    sc:isAccessibleForFree true ;
+    sc:name "UK-REACH" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://www.uk-reach.org" .
+
+<https://bio.tools/ukb> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0199,
+        edam:topic_0625,
+        edam:topic_3337,
+        edam:topic_3517 ;
+    sc:citation <https://doi.org/10.1038/S41588-021-00954-4>,
+        "pubmed:34737426" ;
+    sc:description "A generalized linear mixed model association tool for biobank-scale data." ;
+    sc:featureList edam:operation_3196,
+        edam:operation_3557,
+        edam:operation_3791 ;
+    sc:isAccessibleForFree true ;
+    sc:name "UKB" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://fastgwa.info/ukbimpbin" .
+
 <https://bio.tools/ukbb-srmed> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0625,
         edam:topic_3063,
@@ -480584,7 +512312,7 @@ UK Biobank self reported medications are represented in UK Biobank as a list of
     sc:url "https://github.com/PhilAppleby/ukbb-srmed/" .
 
 <https://bio.tools/ukbcc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3337,
         edam:topic_3452 ;
@@ -480596,8 +512324,31 @@ UK Biobank self reported medications are represented in UK Biobank as a list of
     sc:name "UKBCC" ;
     sc:url "https://pypi.org/project/ukbcc" .
 
+<https://bio.tools/ukbpheno> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_0625,
+        edam:topic_3335,
+        edam:topic_3337,
+        edam:topic_3517 ;
+    sc:citation <https://doi.org/10.1016/J.XPRO.2022.101471>,
+        "pmcid:PMC9234069",
+        "pubmed:35769930" ;
+    sc:description "An R package for phenotyping health-related outcomes in the UK Biobank." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3435,
+        edam:operation_3659 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "ukbpheno" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/niekverw/ukbpheno" .
+
 <https://bio.tools/ukbtools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0634,
@@ -480621,7 +512372,7 @@ UK Biobank self reported medications are represented in UK Biobank as a list of
     biotools:primaryContact "Ken Hanscombe" .
 
 <https://bio.tools/ukin> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0634,
         edam:topic_2640,
@@ -480635,7 +512386,7 @@ UK Biobank self reported medications are represented in UK Biobank as a list of
     sc:url "https://github.com/Singh-Lab/uKIN" .
 
 <https://bio.tools/ukpmc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0218,
         edam:topic_0749,
@@ -480656,7 +512407,7 @@ UK Biobank self reported medications are represented in UK Biobank as a list of
     biotools:primaryContact "Help desk" .
 
 <https://bio.tools/ultranet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3293 ;
     sc:citation <https://doi.org/10.1186/1748-7188-8-7> ;
@@ -480676,10 +512427,10 @@ UK Biobank self reported medications are represented in UK Biobank as a list of
 
 <https://bio.tools/ultraplex> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_2545" ;
+            sc:name "Sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_2229,
@@ -480702,7 +512453,7 @@ UK Biobank self reported medications are represented in UK Biobank as a list of
     sc:url "https://github.com/ulelab/ultraplex" .
 
 <https://bio.tools/ultrapse> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0091,
@@ -480720,7 +512471,7 @@ UK Biobank self reported medications are represented in UK Biobank as a list of
     biotools:primaryContact "Pu-Feng Du" .
 
 <https://bio.tools/ultrasim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0605,
         edam:topic_3070,
@@ -480739,7 +512490,7 @@ UK Biobank self reported medications are represented in UK Biobank as a list of
     biotools:primaryContact "Sverre Holm" .
 
 <https://bio.tools/ultrasound-framerate-finder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -480756,7 +512507,7 @@ UK Biobank self reported medications are represented in UK Biobank as a list of
     biotools:primaryContact "Diego Miguez" .
 
 <https://bio.tools/ulysses> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0199,
@@ -480772,7 +512523,7 @@ UK Biobank self reported medications are represented in UK Biobank as a list of
     sc:url "http://www.lcqb.upmc.fr/ulysses/" .
 
 <https://bio.tools/um-bbd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0621,
@@ -480789,7 +512540,7 @@ UK Biobank self reported medications are represented in UK Biobank as a list of
     biotools:primaryContact "Kathrin Fenner, EAWAG-BBD Director" .
 
 <https://bio.tools/um-pps> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0602,
@@ -480807,7 +512558,7 @@ UK Biobank self reported medications are represented in UK Biobank as a list of
     biotools:primaryContact "Kathrin Fenner, EAWAG-BBD Director" .
 
 <https://bio.tools/umap-dbp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0154,
@@ -480830,7 +512581,7 @@ UK Biobank self reported medications are represented in UK Biobank as a list of
     sc:url "https://github.com/Wang-Jinyue/UMAP-DBP" .
 
 <https://bio.tools/umd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
@@ -480855,7 +512606,7 @@ UK Biobank self reported medications are represented in UK Biobank as a list of
     biotools:primaryContact "Christophe Béroud" .
 
 <https://bio.tools/umd-predictor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0634,
@@ -480875,8 +512626,31 @@ UK Biobank self reported medications are represented in UK Biobank as a list of
     biotools:primaryContact "Christophe Beroud",
         "David Salgado" .
 
+<https://bio.tools/umgap> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0121,
+        edam:topic_0769,
+        edam:topic_3050,
+        edam:topic_3174,
+        edam:topic_3837 ;
+    sc:citation <https://doi.org/10.1186/S12864-022-08542-4>,
+        "pmcid:PMC9188040",
+        "pubmed:35689184" ;
+    sc:description "A taxonomic classifier for shotgun metagenomics reads" ;
+    sc:featureList edam:operation_0337,
+        edam:operation_2495,
+        edam:operation_3460 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "UMGAP" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://unipept.ugent.be/umgap" .
+
 <https://bio.tools/umi-atac-seq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0632,
         edam:topic_0749,
@@ -480894,7 +512668,7 @@ This pipeline is used for UMI-ATAC-seq raw data processing, including removing t
     sc:url "https://github.com/tzhu-bio/UMI-ATAC-seq" .
 
 <https://bio.tools/umi-gen> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_2885,
         edam:topic_3168 ;
@@ -480910,7 +512684,7 @@ Abstract Motivation With Next Generation Sequencing becoming more affordable eve
     sc:url "https://gitlab.com/vincent-sater/umigen" .
 
 <https://bio.tools/umi-tools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_3168,
@@ -480928,7 +512702,7 @@ Abstract Motivation With Next Generation Sequencing becoming more affordable eve
     biotools:primaryContact "Ian Sudbery" .
 
 <https://bio.tools/umi4cats> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3168,
@@ -480947,7 +512721,7 @@ Abstract Motivation With Next Generation Sequencing becoming more affordable eve
     biotools:primaryContact <https://orcid.org/0000-0003-2423-1826> .
 
 <https://bio.tools/umibato> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0128,
@@ -480963,7 +512737,7 @@ Abstract Motivation With Next Generation Sequencing becoming more affordable eve
     sc:url "http://github.com/shion-h/Umibato" .
 
 <https://bio.tools/umic> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:citation <https://doi.org/10.3389/fgene.2021.660366> ;
     sc:description "UMIc is an alignment free framework serving as a pre-processing step of FASTQ files for deduplication and correction of reads building consensus sequences from each UMI. The tool takes into account the frequency and the Phred quality of nucleotides and the distances between the UMIs and the actual sequences, and produces FASTQ files that contain the corrected sequences (without the UMI) and their quality." ;
     sc:isAccessibleForFree true ;
@@ -480974,16 +512748,36 @@ Abstract Motivation With Next Generation Sequencing becoming more affordable eve
     sc:url "https://github.com/BiodataAnalysisGroup/UMIc" ;
     biotools:primaryContact <https://orcid.org/0000-0002-0222-4273> .
 
+<https://bio.tools/umierrorcorrect> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0091,
+        edam:topic_0654,
+        edam:topic_0769 ;
+    sc:citation <https://doi.org/10.1093/CLINCHEM/HVAC136>,
+        "pubmed:36031761" ;
+    sc:description "Software for Consensus Read Generation, Error Correction, and Visualization Using Unique Molecular Identifiers." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3227,
+        edam:operation_3435 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "UMIErrorCorrect" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://github.com/stahlberggroup/umierrorcorrect/wiki/Tutorial> ;
+    sc:url "https://github.com/tobbeost/umierrorcorrect" .
+
 <https://bio.tools/umis> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3496" ;
-            sc:name "RNA sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_3496" ] ;
+            sc:additionalType "http://edamontology.org/data_3496" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "RNA sequence (raw)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3170 ;
@@ -480998,7 +512792,7 @@ Abstract Motivation With Next Generation Sequencing becoming more affordable eve
     biotools:primaryContact "Valentine Svensson" .
 
 <https://bio.tools/umlsmapper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0218,
         edam:topic_3303,
@@ -481012,7 +512806,7 @@ Abstract Motivation With Next Generation Sequencing becoming more affordable eve
     sc:url "https://snlt.vicomtech.org/umlsmapper" .
 
 <https://bio.tools/umpire2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3063,
         edam:topic_3379,
@@ -481027,8 +512821,34 @@ Abstract Motivation With Next Generation Sequencing becoming more affordable eve
     sc:url "https://cran.r-project.org/package=Umpire" ;
     biotools:primaryContact <https://orcid.org/0000-0002-7630-2123> .
 
+<https://bio.tools/umpred-frl> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0091,
+        edam:topic_0121,
+        edam:topic_0154,
+        edam:topic_2275,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.3390/IJMS222313124>,
+        "pmcid:PMC8658322",
+        "pubmed:34884927" ;
+    sc:description "A New Approach for Accurate Prediction of Umami Peptides Using Feature Representation Learning." ;
+    sc:featureList edam:operation_0418,
+        edam:operation_0477,
+        edam:operation_3631 ;
+    sc:isAccessibleForFree true ;
+    sc:name "UMPred-FRL" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://pmlabstack.pythonanywhere.com/UMPred-FRL" .
+
 <https://bio.tools/umx> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0611 ;
@@ -481047,7 +512867,7 @@ Abstract Motivation With Next Generation Sequencing becoming more affordable eve
     biotools:primaryContact "Timothy C. Bates" .
 
 <https://bio.tools/unafold> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0082,
@@ -481066,7 +512886,7 @@ Abstract Motivation With Next Generation Sequencing becoming more affordable eve
     sc:url "http://www.unafold.org/" .
 
 <https://bio.tools/unaprod> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0202,
         edam:topic_0634,
         edam:topic_3396,
@@ -481082,7 +512902,7 @@ Abstract Motivation With Next Generation Sequencing becoming more affordable eve
     sc:url "http://jafarilab.com/unaprod/" .
 
 <https://bio.tools/uncalled> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_2885,
         edam:topic_3174,
@@ -481099,7 +512919,7 @@ Abstract Motivation With Next Generation Sequencing becoming more affordable eve
     sc:url "http://github.com/skovaka/UNCALLED" .
 
 <https://bio.tools/unccombo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_3168,
         edam:topic_3517 ;
@@ -481118,7 +512938,7 @@ Abstract Motivation With Next Generation Sequencing becoming more affordable eve
     sc:url "https://yunliweb.its.unc.edu/UNCcombo/" .
 
 <https://bio.tools/uncoupler> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0602,
@@ -481134,8 +512954,30 @@ Abstract Motivation With Next Generation Sequencing becoming more affordable eve
     sc:softwareHelp <http://people.cryst.bbk.ac.uk/~ubcg66a/uncoupler_summary.html> ;
     sc:url "http://people.cryst.bbk.ac.uk/~ubcg66a/uncoupler_summary.html" .
 
+<https://bio.tools/unctc> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0602,
+        edam:topic_0625,
+        edam:topic_2830,
+        edam:topic_3170,
+        edam:topic_3308 ;
+    sc:citation <https://doi.org/10.1101/2021.11.16.468747> ;
+    sc:description "Characterising single circulating tumor cell transcriptomes." ;
+    sc:featureList edam:operation_2436,
+        edam:operation_3196,
+        edam:operation_3432,
+        edam:operation_3435 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "unCTC" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/SaritaPoonia/unCTC" .
+
 <https://bio.tools/uncurl-app> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0749,
         edam:topic_2229,
@@ -481156,7 +512998,7 @@ This exposes the given port, and then the uncurl-app website can be visited in t
     sc:url "https://uncurl.cs.washington.edu/" .
 
 <https://bio.tools/underiicrms> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1109/TCBB.2014.2306830>,
@@ -481176,7 +513018,7 @@ This exposes the given port, and then the uncurl-app website can be visited in t
     biotools:primaryContact "Matteo Comin" .
 
 <https://bio.tools/underlyingapproach> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3293 ;
     sc:citation <https://doi.org/10.1186/1748-7188-7-34> ;
@@ -481192,7 +513034,7 @@ This exposes the given port, and then the uncurl-app website can be visited in t
     biotools:primaryContact "Matteo Comin" .
 
 <https://bio.tools/underlyingfilter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0160 ;
     sc:citation <https://doi.org/10.3390/a6020352> ;
@@ -481209,14 +513051,14 @@ This exposes the given port, and then the uncurl-app website can be visited in t
 
 <https://bio.tools/undo> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0928" ;
-            sc:name "Gene expression profile" ;
-            sc:sameAs "http://edamontology.org/data_0928" ] ;
+            sc:additionalType "http://edamontology.org/data_0928" ;
+            sc:encodingFormat "http://edamontology.org/format_2056" ;
+            sc:name "Gene expression profile" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3112" ;
-            sc:name "Gene expression matrix" ;
-            sc:sameAs "http://edamontology.org/data_3112" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3112" ;
+            sc:encodingFormat "http://edamontology.org/format_2056" ;
+            sc:name "Gene expression matrix" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2640,
@@ -481237,7 +513079,7 @@ This exposes the given port, and then the uncurl-app website can be visited in t
     biotools:primaryContact "Niya Wang" .
 
 <https://bio.tools/unfazed> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0199,
@@ -481254,14 +513096,14 @@ Unfazed is a command-line tool to determine the parental gamete of origin for de
 
 <https://bio.tools/unfinnigan> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3712" ;
+            sc:name "Mass spectrometry spectra" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3654" ;
+            sc:name "Mass spectrometry spectra" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -481274,7 +513116,7 @@ Unfazed is a command-line tool to determine the parental gamete of origin for de
     sc:url "https://code.google.com/p/unfinnigan/" .
 
 <https://bio.tools/unfold> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0130,
         edam:topic_0602 ;
@@ -481287,7 +513129,7 @@ Unfazed is a command-line tool to determine the parental gamete of origin for de
     sc:url "http://www.cs.rpi.edu/~zaki/www-new/pmwiki.php/Software/Software#toc34" .
 
 <https://bio.tools/unfold-eeg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3300,
         edam:topic_3304,
         edam:topic_3382 ;
@@ -481319,7 +513161,7 @@ Model specification using R-style formulas (EEG~1+face+age).""" ;
     sc:url "http://www.unfoldtoolbox.org" .
 
 <https://bio.tools/unfold-structures> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3572 ;
     sc:description "Unfold and show the content of the given structure. UNFOLD_STRUCTURE(STRUCT) shows recursively the content of the given structure STRUCT. Clean and generic implementation which can be easily extended, e.g. for structures containing cells." ;
@@ -481333,41 +513175,8 @@ Model specification using R-style formulas (EEG~1+face+age).""" ;
     sc:url "https://www.mathworks.com/matlabcentral/fileexchange/31808-unfold-structures" ;
     biotools:primaryContact "Thomas Schaffter" .
 
-<https://bio.tools/unfold_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3300,
-        edam:topic_3304,
-        edam:topic_3382 ;
-    sc:citation <https://doi.org/10.7717/PEERJ.7838>,
-        "pmcid:PMC6815663",
-        "pubmed:31660265" ;
-    sc:description """an integrated toolbox for overlap correction, non-linear modeling, and regression-based EEG analysis.
-
-A matlab EEG toolbox to perform overlap correction and non-linear & linear regression.
-
-EEG Deconvolution Toolbox — Unfold EEG Toolbox.
-
-Unfold - EEG Deconvolution Toolbox.
-
-A toolbox for deconvolution of overlapping EEG (Pupil, LFP etc.) signals and (non)-linear modeling.
-
-A toolbox for deconvolution of overlapping EEG signals and (non)-linear modeling.
-
-git clone https://github.com/unfoldtoolbox/unfold.
-
-If you use the toolbox, please cite us as: Ehinger BV & Dimigen O, Unfold: An integrated toolbox for overlap correction, non-linear modeling, and regression-based EEG analysis, bioRxiv, https://doi.org/10.1101/360156.
-
-Model specification using R-style formulas (EEG~1+face+age).
-
-||| NAME (unfold) SIMILAR TO (PUB. DIFFERENT) bio.tools/unfold (UNFOLD)""" ;
-    sc:featureList edam:operation_0408,
-        edam:operation_3629,
-        edam:operation_3659 ;
-    sc:license "GPL-3.0" ;
-    sc:name "unfold_autogenerated" ;
-    sc:url "http://www.unfoldtoolbox.org" .
-
 <https://bio.tools/unfolding-protein-two-states> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_3292,
@@ -481386,7 +513195,7 @@ Model specification using R-style formulas (EEG~1+face+age).
     biotools:primaryContact "Rohan Dandage" .
 
 <https://bio.tools/unfoldprotein> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0097,
@@ -481404,7 +513213,7 @@ Model specification using R-style formulas (EEG~1+face+age).
     biotools:primaryContact "Kristopher White" .
 
 <https://bio.tools/uniConSig> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0602,
         edam:topic_0634,
@@ -481420,7 +513229,7 @@ Model specification using R-style formulas (EEG~1+face+age).
     sc:url "https://github.com/wangxlab/uniConSig" .
 
 <https://bio.tools/unialign> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -481436,7 +513245,7 @@ Model specification using R-style formulas (EEG~1+face+age).
     sc:url "http://sacan.biomed.drexel.edu/unialign" .
 
 <https://bio.tools/unibind> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0749,
         edam:topic_3169,
@@ -481460,14 +513269,12 @@ This API provides an easy-to-use REST web interface to query/retrieve data from
 
 <https://bio.tools/unicarb-db> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0968" ;
-            sc:name "Keyword" ;
-            sc:sameAs "http://edamontology.org/data_0968" ] ;
+            sc:additionalType "http://edamontology.org/data_0968" ;
+            sc:name "Keyword" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3425" ;
-            sc:name "Carbohydrate property" ;
-            sc:sameAs "http://edamontology.org/data_3425" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3425" ;
+            sc:name "Carbohydrate property" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0152 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btr137> ;
@@ -481482,7 +513289,7 @@ This API provides an easy-to-use REST web interface to query/retrieve data from
     sc:url "http://unicarb-db.biomedicine.gu.se/" .
 
 <https://bio.tools/unicarbkb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0122,
@@ -481513,18 +513320,15 @@ This API provides an easy-to-use REST web interface to query/retrieve data from
 
 <https://bio.tools/unicatdb> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2019" ;
-            sc:name "Map data" ;
-            sc:sameAs "http://edamontology.org/data_2019" ],
+            sc:additionalType "http://edamontology.org/data_2019" ;
+            sc:name "Map data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3736" ;
-            sc:name "Ecological data" ;
-            sc:sameAs "http://edamontology.org/data_3736" ],
+            sc:additionalType "http://edamontology.org/data_2019" ;
+            sc:name "Map data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2019" ;
-            sc:name "Map data" ;
-            sc:sameAs "http://edamontology.org/data_2019" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3736" ;
+            sc:name "Ecological data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0610 ;
     sc:contributor "František Mastil",
@@ -481545,7 +513349,7 @@ This API provides an easy-to-use REST web interface to query/retrieve data from
     sc:url "https://www.unicatdb.org/" .
 
 <https://bio.tools/unicon3d> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0130,
@@ -481560,14 +513364,14 @@ This API provides an easy-to-use REST web interface to query/retrieve data from
 
 <https://bio.tools/unicycler> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0848" ;
-            sc:name "Raw sequence" ;
-            sc:sameAs "http://edamontology.org/data_0848" ] ;
+            sc:additionalType "http://edamontology.org/data_0848" ;
+            sc:encodingFormat "http://edamontology.org/format_2571" ;
+            sc:name "Raw sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0925" ;
-            sc:name "Sequence assembly" ;
-            sc:sameAs "http://edamontology.org/data_0925" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0925" ;
+            sc:encodingFormat "http://edamontology.org/format_3617" ;
+            sc:name "Sequence assembly" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0622,
@@ -481588,16 +513392,37 @@ This API provides an easy-to-use REST web interface to query/retrieve data from
     sc:url "https://github.com/rrwick/Unicycler" ;
     biotools:primaryContact "Ryan R. Wick" .
 
+<https://bio.tools/unifan> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0602,
+        edam:topic_2229,
+        edam:topic_3170,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1101/2021.11.20.469410> ;
+    sc:description "UNIFAN (Unsupervised Single-cell Functional Annotation) simultaneously clusters and annotates cells with known biological processes (including pathways)." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3432,
+        edam:operation_3672 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "UNIFAN" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/doraadong/UNIFAN" .
+
 <https://bio.tools/unifiedwmwqpcr> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Gene expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ] ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Gene expression data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Gene expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Gene expression data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3519 ;
@@ -481617,18 +513442,16 @@ This API provides an easy-to-use REST web interface to query/retrieve data from
 
 <https://bio.tools/unigene> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2594" ;
-            sc:name "UniGene taxon" ;
-            sc:sameAs "http://edamontology.org/data_2594" ],
+            sc:additionalType "http://edamontology.org/data_1104" ;
+            sc:name "Sequence cluster ID (UniGene)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1104" ;
-            sc:name "Sequence cluster ID (UniGene)" ;
-            sc:sameAs "http://edamontology.org/data_1104" ] ;
+            sc:additionalType "http://edamontology.org/data_2594" ;
+            sc:name "UniGene taxon" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3134" ;
-            sc:name "Gene transcript report" ;
-            sc:sameAs "http://edamontology.org/data_3134" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3134" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Gene transcript report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0623,
@@ -481643,7 +513466,7 @@ This API provides an easy-to-use REST web interface to query/retrieve data from
     sc:url "http://www.ncbi.nlm.nih.gov/sites/entrez?db=UniGene" .
 
 <https://bio.tools/unilectin> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
         edam:topic_0152,
@@ -481665,14 +513488,14 @@ The LectomeXplore database provides predicted lectin domains (reversible carbohy
 
 <https://bio.tools/unimod> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2618" ;
-            sc:name "Protein modification ID" ;
-            sc:sameAs "http://edamontology.org/data_2618" ] ;
+            sc:additionalType "http://edamontology.org/data_2618" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Protein modification ID" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0844" ;
-            sc:name "Molecular mass" ;
-            sc:sameAs "http://edamontology.org/data_0844" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0844" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Molecular mass" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0601,
@@ -481688,7 +513511,7 @@ The LectomeXplore database provides predicted lectin domains (reversible carbohy
     sc:url "http://www.unimod.org" .
 
 <https://bio.tools/unimog> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0622,
@@ -481704,7 +513527,7 @@ The LectomeXplore database provides predicted lectin domains (reversible carbohy
     sc:url "http://bibiserv.techfak.uni-bielefeld.de/dcj/" .
 
 <https://bio.tools/uninovo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btt338>,
@@ -481718,18 +513541,15 @@ The LectomeXplore database provides predicted lectin domains (reversible carbohy
 
 <https://bio.tools/union> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ],
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0850" ;
-            sc:name "Sequence set" ;
-            sc:sameAs "http://edamontology.org/data_0850" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0850" ;
+            sc:name "Sequence set" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -481759,7 +513579,7 @@ The LectomeXplore database provides predicted lectin domains (reversible carbohy
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/union.html" .
 
 <https://bio.tools/unioncom> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0108,
         edam:topic_2229,
@@ -481778,10 +513598,10 @@ UnionCom software is available on the Python package index (PyPI), latest versio
 
 <https://bio.tools/uniparc> a sc:SoftwareApplication ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Sequence record" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0623 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/bth191> ;
@@ -481797,7 +513617,7 @@ UnionCom software is available on the Python package index (PyPI), latest versio
     biotools:primaryContact "Support" .
 
 <https://bio.tools/unipath> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2229,
         edam:topic_3170,
@@ -481816,18 +513636,15 @@ UniPath provides robust statistical methods to represent every single cell using
 
 <https://bio.tools/unipept> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:name "Protein sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0872" ;
-            sc:name "Phylogenetic tree" ;
-            sc:sameAs "http://edamontology.org/data_0872" ],
+            sc:additionalType "http://edamontology.org/data_0850" ;
+            sc:name "Sequence set" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0850" ;
-            sc:name "Sequence set" ;
-            sc:sameAs "http://edamontology.org/data_0850" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0872" ;
+            sc:name "Phylogenetic tree" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0769,
@@ -481851,22 +513668,22 @@ UniPath provides robust statistical methods to represent every single cell using
 
 <https://bio.tools/unipept_cli> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1179" ;
-            sc:name "NCBI taxonomy ID" ;
-            sc:sameAs "http://edamontology.org/data_1179" ],
+            sc:additionalType "http://edamontology.org/data_2886" ;
+            sc:encodingFormat "http://edamontology.org/format_1964" ;
+            sc:name "Protein sequence record" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2886" ;
-            sc:name "Protein sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2886" ] ;
+            sc:additionalType "http://edamontology.org/data_1179" ;
+            sc:encodingFormat "http://edamontology.org/format_1964" ;
+            sc:name "NCBI taxonomy ID" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3021" ;
-            sc:name "UniProt accession" ;
-            sc:sameAs "http://edamontology.org/data_3021" ],
+            sc:additionalType "http://edamontology.org/data_3021" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "UniProt accession" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1179" ;
-            sc:name "NCBI taxonomy ID" ;
-            sc:sameAs "http://edamontology.org/data_1179" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1179" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "NCBI taxonomy ID" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121 ;
     sc:citation <https://doi.org/10.1016/j.jprot.2017.05.022>,
@@ -481890,18 +513707,18 @@ UniPath provides robust statistical methods to represent every single cell using
 
 <https://bio.tools/unipept_visualizations> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3028" ;
-            sc:name "Taxonomy" ;
-            sc:sameAs "http://edamontology.org/data_3028" ],
+            sc:additionalType "http://edamontology.org/data_2589" ;
+            sc:encodingFormat "http://edamontology.org/format_3464" ;
+            sc:name "Hierarchy" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2589" ;
-            sc:name "Hierarchy" ;
-            sc:sameAs "http://edamontology.org/data_2589" ] ;
+            sc:additionalType "http://edamontology.org/data_3028" ;
+            sc:encodingFormat "http://edamontology.org/format_3464" ;
+            sc:name "Taxonomy" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3604" ;
+            sc:name "Image" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0637 ;
@@ -481924,7 +513741,7 @@ UniPath provides robust statistical methods to represent every single cell using
     biotools:primaryContact <http://orcid.org/0000-0003-0610-3441> .
 
 <https://bio.tools/unipop> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0654,
@@ -481938,7 +513755,7 @@ UniPath provides robust statistical methods to represent every single cell using
     sc:url "http://www5.esu.edu/cpsc/bioinfo/software/UNIPOP/" .
 
 <https://bio.tools/uniprime2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0632,
         edam:topic_0769,
@@ -481955,7 +513772,7 @@ UniPath provides robust statistical methods to represent every single cell using
     sc:url "http://uniprime.batlab.eu" .
 
 <https://bio.tools/uniprobe> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -481976,13 +513793,40 @@ UniPath provides robust statistical methods to represent every single cell using
     biotools:primaryContact "Bulyk Lab" .
 
 <https://bio.tools/uniprot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
         edam:topic_0621,
         edam:topic_3068,
         edam:topic_3520 ;
     sc:citation <https://doi.org/10.1093/NAR/GKAA1100>,
+        <https://doi.org/10.1093/database/bar009>,
+        <https://doi.org/10.1093/nar/gkh131>,
+        <https://doi.org/10.1093/nar/gki070>,
+        <https://doi.org/10.1093/nar/gkj161>,
+        <https://doi.org/10.1093/nar/gkl929>,
+        <https://doi.org/10.1093/nar/gkm895>,
+        <https://doi.org/10.1093/nar/gkn664>,
+        <https://doi.org/10.1093/nar/gkp846>,
+        <https://doi.org/10.1093/nar/gkr981>,
+        <https://doi.org/10.1093/nar/gks1068>,
+        <https://doi.org/10.1093/nar/gkw1099>,
+        <https://doi.org/10.1093/nar/gky092>,
+        <https://doi.org/10.1093/nar/gky1049>,
+        "pmcid:PMC3245120",
+        "pubmed:14681372",
+        "pubmed:15608167",
+        "pubmed:16381842",
+        "pubmed:17142230",
+        "pubmed:18045787",
+        "pubmed:18836194",
+        "pubmed:19843607",
+        "pubmed:21447597",
+        "pubmed:22102590",
+        "pubmed:23161681",
+        "pubmed:27899622",
+        "pubmed:29425356",
+        "pubmed:30395287",
         "pubmed:33237286" ;
     sc:description """The universal protein knowledgebase in 2021.
 
@@ -481997,14 +513841,12 @@ You are using a version of browser that may not display all the features of this
 
 <https://bio.tools/uniprot_align> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:name "Protein sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:name "Sequence alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1093/nar/gku989> ;
@@ -482026,14 +513868,12 @@ You are using a version of browser that may not display all the features of this
 
 <https://bio.tools/uniprot_blast> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:name "Protein sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0857" ;
-            sc:name "Sequence search results" ;
-            sc:sameAs "http://edamontology.org/data_0857" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0857" ;
+            sc:name "Sequence search results" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:author "Xavier Watkins" ;
@@ -482055,7 +513895,7 @@ You are using a version of browser that may not display all the features of this
     biotools:primaryContact "Xavier Watkins" .
 
 <https://bio.tools/uniprot_id_mapping> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3345 ;
     sc:description "Maps identifiers to or from UniProtKB." ;
@@ -482072,7 +513912,7 @@ You are using a version of browser that may not display all the features of this
     biotools:primaryContact "Xavier Watkins" .
 
 <https://bio.tools/uniprotkb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0121,
@@ -482106,7 +513946,7 @@ You are using a version of browser that may not display all the features of this
     biotools:primaryContact "UniProt Helpdesk" .
 
 <https://bio.tools/uniprotkb_swiss-prot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0601,
         edam:topic_0602,
@@ -482132,7 +513972,7 @@ You are using a version of browser that may not display all the features of this
     biotools:primaryContact "Contact Form" .
 
 <https://bio.tools/uniqueprot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -482152,7 +513992,7 @@ You are using a version of browser that may not display all the features of this
     biotools:primaryContact "S. Mika" .
 
 <https://bio.tools/uniquorn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0199,
@@ -482176,7 +514016,7 @@ You are using a version of browser that may not display all the features of this
     biotools:primaryContact "'Raik Otto'" .
 
 <https://bio.tools/unired> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0085 ;
     sc:citation <https://doi.org/10.1093/nargab/lqaa005> ;
@@ -482186,106 +514026,98 @@ You are using a version of browser that may not display all the features of this
 
 <https://bio.tools/uniref> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2348" ;
-            sc:name "Sequence cluster ID (UniRef90)" ;
-            sc:sameAs "http://edamontology.org/data_2348" ],
+            sc:additionalType "http://edamontology.org/data_2347" ;
+            sc:name "Sequence cluster ID (UniRef100)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2349" ;
-            sc:name "Sequence cluster ID (UniRef50)" ;
-            sc:sameAs "http://edamontology.org/data_2349" ],
+            sc:additionalType "http://edamontology.org/data_2348" ;
+            sc:name "Sequence cluster ID (UniRef90)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2348" ;
-            sc:name "Sequence cluster ID (UniRef90)" ;
-            sc:sameAs "http://edamontology.org/data_2348" ],
+            sc:additionalType "http://edamontology.org/data_2349" ;
+            sc:name "Sequence cluster ID (UniRef50)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2349" ;
-            sc:name "Sequence cluster ID (UniRef50)" ;
-            sc:sameAs "http://edamontology.org/data_2349" ],
+            sc:additionalType "http://edamontology.org/data_2349" ;
+            sc:name "Sequence cluster ID (UniRef50)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2349" ;
-            sc:name "Sequence cluster ID (UniRef50)" ;
-            sc:sameAs "http://edamontology.org/data_2349" ],
+            sc:additionalType "http://edamontology.org/data_2347" ;
+            sc:name "Sequence cluster ID (UniRef100)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2347" ;
-            sc:name "Sequence cluster ID (UniRef100)" ;
-            sc:sameAs "http://edamontology.org/data_2347" ],
+            sc:additionalType "http://edamontology.org/data_2348" ;
+            sc:name "Sequence cluster ID (UniRef90)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2348" ;
-            sc:name "Sequence cluster ID (UniRef90)" ;
-            sc:sameAs "http://edamontology.org/data_2348" ],
+            sc:additionalType "http://edamontology.org/data_2349" ;
+            sc:name "Sequence cluster ID (UniRef50)" ],
         [ a bsct:FormalParameter ;
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-            sc:name "Sequence cluster ID (UniRef100)" ;
-            sc:sameAs "http://edamontology.org/data_2347" ],
+            sc:additionalType "http://edamontology.org/data_2349" ;
+            sc:name "Sequence cluster ID (UniRef50)" ],
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-            sc:name "Sequence cluster ID (UniRef90)" ;
-            sc:sameAs "http://edamontology.org/data_2348" ],
+            sc:additionalType "http://edamontology.org/data_2348" ;
+            sc:name "Sequence cluster ID (UniRef90)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2349" ;
-            sc:name "Sequence cluster ID (UniRef50)" ;
-            sc:sameAs "http://edamontology.org/data_2349" ],
+            sc:additionalType "http://edamontology.org/data_2347" ;
+            sc:name "Sequence cluster ID (UniRef100)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2347" ;
-            sc:name "Sequence cluster ID (UniRef100)" ;
-            sc:sameAs "http://edamontology.org/data_2347" ],
+            sc:additionalType "http://edamontology.org/data_2348" ;
+            sc:name "Sequence cluster ID (UniRef90)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2347" ;
-            sc:name "Sequence cluster ID (UniRef100)" ;
-            sc:sameAs "http://edamontology.org/data_2347" ] ;
+            sc:additionalType "http://edamontology.org/data_2347" ;
+            sc:name "Sequence cluster ID (UniRef100)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1245" ;
-            sc:name "Sequence cluster (protein)" ;
-            sc:sameAs "http://edamontology.org/data_1245" ],
+            sc:additionalType "http://edamontology.org/data_1245" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence cluster (protein)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1245" ;
-            sc:name "Sequence cluster (protein)" ;
-            sc:sameAs "http://edamontology.org/data_1245" ],
+            sc:additionalType "http://edamontology.org/data_1245" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Sequence cluster (protein)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1245" ;
-            sc:name "Sequence cluster (protein)" ;
-            sc:sameAs "http://edamontology.org/data_1245" ],
+            sc:additionalType "http://edamontology.org/data_1245" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Sequence cluster (protein)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1245" ;
-            sc:name "Sequence cluster (protein)" ;
-            sc:sameAs "http://edamontology.org/data_1245" ],
+            sc:additionalType "http://edamontology.org/data_1245" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence cluster (protein)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1245" ;
-            sc:name "Sequence cluster (protein)" ;
-            sc:sameAs "http://edamontology.org/data_1245" ],
+            sc:additionalType "http://edamontology.org/data_1245" ;
+            sc:encodingFormat "http://edamontology.org/format_2376" ;
+            sc:name "Sequence cluster (protein)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1245" ;
-            sc:name "Sequence cluster (protein)" ;
-            sc:sameAs "http://edamontology.org/data_1245" ],
+            sc:additionalType "http://edamontology.org/data_1245" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Sequence cluster (protein)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1245" ;
-            sc:name "Sequence cluster (protein)" ;
-            sc:sameAs "http://edamontology.org/data_1245" ],
+            sc:additionalType "http://edamontology.org/data_1245" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence cluster (protein)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1245" ;
-            sc:name "Sequence cluster (protein)" ;
-            sc:sameAs "http://edamontology.org/data_1245" ],
+            sc:additionalType "http://edamontology.org/data_1245" ;
+            sc:encodingFormat "http://edamontology.org/format_2376" ;
+            sc:name "Sequence cluster (protein)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1245" ;
-            sc:name "Sequence cluster (protein)" ;
-            sc:sameAs "http://edamontology.org/data_1245" ],
+            sc:additionalType "http://edamontology.org/data_1245" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Sequence cluster (protein)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1245" ;
-            sc:name "Sequence cluster (protein)" ;
-            sc:sameAs "http://edamontology.org/data_1245" ],
+            sc:additionalType "http://edamontology.org/data_1245" ;
+            sc:encodingFormat "http://edamontology.org/format_2376" ;
+            sc:name "Sequence cluster (protein)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1245" ;
-            sc:name "Sequence cluster (protein)" ;
-            sc:sameAs "http://edamontology.org/data_1245" ],
+            sc:additionalType "http://edamontology.org/data_1245" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Sequence cluster (protein)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1245" ;
-            sc:name "Sequence cluster (protein)" ;
-            sc:sameAs "http://edamontology.org/data_1245" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1245" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Sequence cluster (protein)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0114 ;
-    sc:citation <https://doi.org/10.1093/bioinformatics/btu739> ;
+    sc:citation <https://doi.org/10.1093/bioinformatics/btm098>,
+        <https://doi.org/10.1093/bioinformatics/btu739>,
+        "pmcid:PMC4375400",
+        "pubmed:17379688",
+        "pubmed:25398609" ;
     sc:description "Clustered sets of sequences from UniProt Knowledgebase (including splice variants and isoforms) and selected UniParc records, in order to obtain complete coverage of sequence space at several resolutions while hiding redundant sequences (but not their descriptions) from view." ;
     sc:featureList edam:operation_0224 ;
     sc:name "UniProt Reference Clusters (UniRef)" ;
@@ -482296,7 +514128,7 @@ You are using a version of browser that may not display all the features of this
     sc:url "http://www.uniprot.org/uniref/" .
 
 <https://bio.tools/unitas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0097,
@@ -482317,20 +514149,30 @@ You are using a version of browser that may not display all the features of this
 
 <https://bio.tools/unite_rdna> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2390" ;
-            sc:name "UNITE accession" ;
-            sc:sameAs "http://edamontology.org/data_2390" ] ;
+            sc:additionalType "http://edamontology.org/data_2390" ;
+            sc:name "UNITE accession" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2955" ;
-            sc:name "Sequence report" ;
-            sc:sameAs "http://edamontology.org/data_2955" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2955" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Sequence report" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_3028" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Taxonomy" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
-    sc:applicationSubCategory edam:topic_0654 ;
+    sc:applicationSubCategory edam:topic_0654,
+        edam:topic_3572 ;
     sc:citation <https://doi.org/10.1111/mec.12481> ;
-    sc:description "rDNA sequence database focused on ectomycorrhizal asco- and basidiomycetes." ;
-    sc:featureList edam:operation_0224 ;
-    sc:name "UNITE rDNA" ;
+    sc:description "UNITE is a database and sequence management environment centered on the eukaryotic nuclear ribosomal ITS region. All eukaryotic ITS sequences from the International Nucleotide Sequence Database Collaboration are clustered to approximately the species level (distance between species in steps of 0.5%), and all such species hypotheses are given a DOI to facilitate unambiguous scientific communication and data assembly." ;
+    sc:featureList edam:operation_0224,
+        edam:operation_0346,
+        edam:operation_0566,
+        edam:operation_3200,
+        edam:operation_3460 ;
+    sc:isAccessibleForFree true ;
+    sc:license "CC-BY-SA-4.0" ;
+    sc:name "UNITE database" ;
     sc:operatingSystem "Linux",
         "Mac",
         "Windows" ;
@@ -482339,14 +514181,13 @@ You are using a version of browser that may not display all the features of this
 
 <https://bio.tools/unitrap> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1033" ;
-            sc:name "Ensembl gene ID" ;
-            sc:sameAs "http://edamontology.org/data_1033" ] ;
+            sc:additionalType "http://edamontology.org/data_1033" ;
+            sc:name "Ensembl gene ID" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0916" ;
-            sc:name "Gene report" ;
-            sc:sameAs "http://edamontology.org/data_0916" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0916" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Gene report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0114 ;
     sc:citation <https://doi.org/10.1093/nar/gkm825> ;
@@ -482360,7 +514201,7 @@ You are using a version of browser that may not display all the features of this
     sc:url "http://unitrap.crg.es/about.php" .
 
 <https://bio.tools/universal_TTSs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_3125,
@@ -482382,7 +514223,7 @@ You are using a version of browser that may not display all the features of this
     biotools:primaryContact "Yulia A. Medvedeva" .
 
 <https://bio.tools/universc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0099,
@@ -482402,7 +514243,7 @@ Single-cell RNA-sequencing analysis to quantify RNA molecules in individual cell
     sc:url "https://github.com/minoda-lab/universc" .
 
 <https://bio.tools/unmix-me> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0632,
         edam:topic_3077,
         edam:topic_3382 ;
@@ -482418,7 +514259,7 @@ Deep Learning for Hyperspectral Fluorescence Lifetime Image (HFLI) Unmixing."""
     sc:url "https://github.com/jasontsmith2718/UNMIX-ME" .
 
 <https://bio.tools/uno-biomechanics-nonlinear-analysis-toolbox> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3315,
@@ -482437,7 +514278,7 @@ Deep Learning for Hyperspectral Fluorescence Lifetime Image (HFLI) Unmixing."""
     biotools:primaryContact "UNO Biomechanics" .
 
 <https://bio.tools/unoseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3170 ;
@@ -482452,8 +514293,32 @@ Deep Learning for Hyperspectral Fluorescence Lifetime Image (HFLI) Unmixing."""
     sc:url "http://sourceforge.net/projects/unoseq/" ;
     biotools:primaryContact "Fabian Birzele" .
 
+<https://bio.tools/unpairreg> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_0203,
+        edam:topic_2229,
+        edam:topic_3170,
+        edam:topic_3940 ;
+    sc:citation <https://doi.org/10.1186/S13059-022-02726-7>,
+        "pmcid:PMC9295346",
+        "pubmed:35854350" ;
+    sc:description "Integration of single-cell multi-omics data by regression analysis on unpaired observations." ;
+    sc:featureList edam:operation_0313,
+        edam:operation_0314,
+        edam:operation_0441,
+        edam:operation_3659 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "UnpairReg" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/Durenlab/UnpairReg" .
+
 <https://bio.tools/unphased> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654,
@@ -482469,18 +514334,17 @@ Deep Learning for Hyperspectral Fluorescence Lifetime Image (HFLI) Unmixing."""
 
 <https://bio.tools/unres> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ],
+            sc:additionalType "http://edamontology.org/data_1127" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "PDB ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1127" ;
-            sc:name "PDB ID" ;
-            sc:sameAs "http://edamontology.org/data_1127" ] ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Protein sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1537" ;
-            sc:name "Protein structure report" ;
-            sc:sameAs "http://edamontology.org/data_1537" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1537" ;
+            sc:name "Protein structure report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0176,
         edam:topic_0593,
@@ -482496,7 +514360,7 @@ Deep Learning for Hyperspectral Fluorescence Lifetime Image (HFLI) Unmixing."""
         "Cezary Czaplewski" .
 
 <https://bio.tools/unwords> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3168 ;
@@ -482508,7 +514372,7 @@ Deep Learning for Hyperspectral Fluorescence Lifetime Image (HFLI) Unmixing."""
     sc:url "http://www.zbh.uni-hamburg.de/forschung/arbeitsgruppe-genominformatik/software/unwords.html" .
 
 <https://bio.tools/upb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3360,
         edam:topic_3678 ;
@@ -482524,7 +514388,7 @@ Deep Learning for Hyperspectral Fluorescence Lifetime Image (HFLI) Unmixing."""
     sc:url "http://59.108.16.249/biomarker/web/indexdb" .
 
 <https://bio.tools/updog> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3516,
         edam:topic_3518 ;
@@ -482537,7 +514401,7 @@ Deep Learning for Hyperspectral Fluorescence Lifetime Image (HFLI) Unmixing."""
     sc:url "https://cran.r-project.org/package=updog" .
 
 <https://bio.tools/updowndistance> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3293 ;
     sc:citation "pmcid:PMC2658875",
@@ -482552,7 +514416,7 @@ Deep Learning for Hyperspectral Fluorescence Lifetime Image (HFLI) Unmixing."""
     sc:url "http://web.njit.edu/~wangj/updown.htm" .
 
 <https://bio.tools/upefinder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
         edam:topic_0203,
@@ -482575,14 +514439,14 @@ neXtProt Ensemble Id Gene Name GO Term GO Id MSIG Term Disease Chromosome.""" ;
 
 <https://bio.tools/upf> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2974" ;
-            sc:name "Protein sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_2974" ] ;
+            sc:additionalType "http://edamontology.org/data_2974" ;
+            sc:encodingFormat "http://edamontology.org/format_2200" ;
+            sc:name "Protein sequence (raw)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1270" ;
-            sc:name "Feature table" ;
-            sc:sameAs "http://edamontology.org/data_1270" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1270" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Feature table" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121 ;
     sc:author "Dr. Michael Kohl" ;
@@ -482598,8 +514462,27 @@ neXtProt Ensemble Id Gene Name GO Term GO Id MSIG Term Disease Chromosome.""" ;
     sc:url "https://www.ruhr-uni-bochum.de/mpc/software/legacy/index.html.en#UPF" ;
     biotools:primaryContact "PD Dr. Martin Eisenacher" .
 
+<https://bio.tools/upfpsr> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0601,
+        edam:topic_0780,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.3934/MBE.2022035>,
+        "pubmed:34903012" ;
+    sc:description "A ubiquitylation predictor for plant through combining sequence information and random forest." ;
+    sc:featureList edam:operation_0417 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Apache-2.0" ;
+    sc:name "UPFPSR" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/ysw-sunshine/UPFPSR" .
+
 <https://bio.tools/uphyloplot2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3170,
@@ -482622,7 +514505,7 @@ neXtProt Ensemble Id Gene Name GO Term GO Id MSIG Term Disease Chromosome.""" ;
     sc:url "https://github.com/harbourlab/UPhyloplot2/" .
 
 <https://bio.tools/upic> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0625,
@@ -482639,21 +514522,21 @@ neXtProt Ensemble Id Gene Name GO Term GO Id MSIG Term Disease Chromosome.""" ;
 
 <https://bio.tools/upimapi> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2886" ;
-            sc:name "Protein sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2886" ] ;
+            sc:additionalType "http://edamontology.org/data_2886" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0907" ;
-            sc:name "Protein family report" ;
-            sc:sameAs "http://edamontology.org/data_0907" ],
+            sc:additionalType "http://edamontology.org/data_0857" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Sequence search results" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0857" ;
-            sc:name "Sequence search results" ;
-            sc:sameAs "http://edamontology.org/data_0857" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0907" ;
+            sc:name "Protein family report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0085 ;
     sc:author <http://orcid.org/0000-0002-2691-9950> ;
+    sc:citation <https://doi.org/10.1016/j.csbj.2022.03.042> ;
     sc:description "UniProt Id Mapping through API" ;
     sc:featureList edam:operation_3282,
         edam:operation_3672 ;
@@ -482663,11 +514546,11 @@ neXtProt Ensemble Id Gene Name GO Term GO Id MSIG Term Disease Chromosome.""" ;
     sc:operatingSystem "Linux",
         "Mac" ;
     sc:softwareHelp <https://github.com/iquasere/UPIMAPI#readme> ;
-    sc:softwareVersion "1.2.0" ;
+    sc:softwareVersion "1.7.4" ;
     sc:url "https://github.com/iquasere/UPIMAPI" .
 
 <https://bio.tools/upmaboss> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2229,
         edam:topic_2269,
@@ -482691,7 +514574,7 @@ MaBoSS is a C++ software for simulating continuous/discrete time Markov processe
     sc:url "https://maboss.curie.fr" .
 
 <https://bio.tools/uproc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0123,
@@ -482707,7 +514590,7 @@ MaBoSS is a C++ software for simulating continuous/discrete time Markov processe
     sc:url "http://uproc.gobics.de/" .
 
 <https://bio.tools/upsetr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_2269 ;
@@ -482722,7 +514605,7 @@ MaBoSS is a C++ software for simulating continuous/discrete time Markov processe
     biotools:primaryContact "Nils Gehlenborg" .
 
 <https://bio.tools/uqlust> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0099,
@@ -482740,24 +514623,8 @@ MaBoSS is a C++ software for simulating continuous/discrete time Markov processe
     sc:url "https://github.com/uQlust" ;
     biotools:primaryContact "Support" .
 
-<https://bio.tools/urban> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0102,
-        edam:topic_0610,
-        edam:topic_3305,
-        edam:topic_3810 ;
-    sc:citation <https://doi.org/10.20944/PREPRINTS201812.0250.V3> ;
-    sc:description """Annually Modelling Built-settlements between Remotely-sensed Observations Using Relative Changes in Subnational Populations and Lights at Night.
-
-Mapping settlement extents at the annual time step has a wide variety of applications in demography, public health, sustainable development, and many other fields. Recently, while more multitemporal urban feature or human settlement datasets have become available, issues still exist in remotely-sensed imagery due to coverage, adverse atmospheric conditions, and expenses involved in producing such feature sets. These challenges make it difficult to increase temporal coverage while maintaining high fidelity in the spatial resolution. Here we demonstrate an interpolative and flexible modeling framework for producing annual built-settlement extents.
-
-||| HOMEPAGE BROKEN!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'interpolative', 'dasymetric', 'remotely-sensed', 'remotely-sensed imagery'""" ;
-    sc:name "urban" ;
-    sc:url "https://www.merriamwebster.com/dictionary/urban" .
-
 <https://bio.tools/urban-rural> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3305,
         edam:topic_3390,
         edam:topic_3399,
@@ -482781,7 +514648,7 @@ National Center for Health Statistics (NCHS) data systems are often used to stud
     sc:url "https://www.cdc.gov/nchs/data_access/urban_rural.htm" .
 
 <https://bio.tools/urdme> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0176,
         edam:topic_2259,
@@ -482799,14 +514666,12 @@ National Center for Health Statistics (NCHS) data systems are often used to stud
 
 <https://bio.tools/urlget> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0957" ;
-            sc:name "Database metadata" ;
-            sc:sameAs "http://edamontology.org/data_0957" ] ;
+            sc:additionalType "http://edamontology.org/data_0957" ;
+            sc:name "Database metadata" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0957" ;
-            sc:name "Database metadata" ;
-            sc:sameAs "http://edamontology.org/data_0957" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0957" ;
+            sc:name "Database metadata" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -482836,7 +514701,7 @@ National Center for Health Statistics (NCHS) data systems are often used to stud
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/urlget.html" .
 
 <https://bio.tools/urmap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0622,
         edam:topic_3168 ;
@@ -482849,7 +514714,7 @@ National Center for Health Statistics (NCHS) data systems are often used to stud
     sc:url "https://drive5.com/urmap" .
 
 <https://bio.tools/urms> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_2275,
@@ -482863,7 +514728,7 @@ National Center for Health Statistics (NCHS) data systems are often used to stud
     sc:url "http://biozon.org/ftp/software/urms/index.html" .
 
 <https://bio.tools/uropa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3168,
@@ -482879,7 +514744,7 @@ National Center for Health Statistics (NCHS) data systems are often used to stud
     biotools:primaryContact "Mario Looso" .
 
 <https://bio.tools/urqt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3168,
         edam:topic_3572 ;
@@ -482894,7 +514759,7 @@ National Center for Health Statistics (NCHS) data systems are often used to stud
     sc:url "https://lbbe.univ-lyon1.fr/-UrQt-.html" .
 
 <https://bio.tools/ursahd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0634,
@@ -482918,18 +514783,18 @@ Leveraging gene expression profiles of thousands of tissue and disease samples b
 
 <https://bio.tools/ursgal> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3483" ;
-            sc:name "Spectrum" ;
-            sc:sameAs "http://edamontology.org/data_3483" ],
+            sc:additionalType "http://edamontology.org/data_1233" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence set (protein)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1233" ;
-            sc:name "Sequence set (protein)" ;
-            sc:sameAs "http://edamontology.org/data_1233" ] ;
+            sc:additionalType "http://edamontology.org/data_3483" ;
+            sc:encodingFormat "http://edamontology.org/format_3244" ;
+            sc:name "Spectrum" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Peptide identification" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -482958,8 +514823,40 @@ Leveraging gene expression profiles of thousands of tissue and disease samples b
     sc:softwareVersion "0.6.8" ;
     sc:url "https://github.com/ursgal/ursgal" .
 
+<https://bio.tools/us-align> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1465" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "RNA structure" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein structure" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0080,
+        edam:topic_0097,
+        edam:topic_0099,
+        edam:topic_0654,
+        edam:topic_2275 ;
+    sc:citation <https://doi.org/10.1038/S41592-022-01585-1>,
+        "pubmed:36038728" ;
+    sc:description "Universal structure alignments of proteins, nucleic acids, and macromolecular complexes." ;
+    sc:featureList edam:operation_0491,
+        edam:operation_0502,
+        edam:operation_0503,
+        edam:operation_0504,
+        edam:operation_0510 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "US-align" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://zhanggroup.org/US-align/" .
+
 <https://bio.tools/usdsm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_3474,
@@ -482979,7 +514876,7 @@ Leveraging gene expression profiles of thousands of tissue and disease samples b
         "Tiejun Zhang" .
 
 <https://bio.tools/use> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154 ;
     sc:citation <https://doi.org/10.1101/2020.09.08.287557> ;
@@ -482996,8 +514893,30 @@ The Universal Spectrum Explorer (USE) is a web-based tool based for cross-resour
     sc:softwareHelp <https://github.com/kusterlab/universal_spectrum_explorer/wiki> ;
     sc:url "https://github.com/kusterlab/universal_spectrum_explorer" .
 
+<https://bio.tools/use-net> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0634,
+        edam:topic_3315,
+        edam:topic_3382,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1109/AIPR52630.2021.9762213>,
+        "pmcid:PMC9060239",
+        "pubmed:35506043" ;
+    sc:description "Extending U-Net Network for Improved Nuclei Instance Segmentation Accuracy in Histopathology Images." ;
+    sc:featureList edam:operation_3435,
+        edam:operation_3436,
+        edam:operation_3443 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "USE-Net" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/CIVA-Lab/USE-Net" .
+
 <https://bio.tools/usearch> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654,
@@ -483017,7 +514936,7 @@ The Universal Spectrum Explorer (USE) is a web-based tool based for cross-resour
     sc:url "http://www.drive5.com/usearch/" .
 
 <https://bio.tools/useq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_3169,
         edam:topic_3170,
@@ -483034,7 +514953,7 @@ The Universal Spectrum Explorer (USE) is a web-based tool based for cross-resour
     biotools:primaryContact "David Nix" .
 
 <https://bio.tools/ushr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0202,
         edam:topic_0781,
         edam:topic_3315,
@@ -483056,7 +514975,7 @@ ushr is an open-source R package that models the decline of HIV during ART using
     sc:url "https://github.com/SineadMorris/ushr" .
 
 <https://bio.tools/uslcount> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3170,
         edam:topic_3474,
@@ -483074,7 +514993,7 @@ ushr is an open-source R package that models the decline of HIV during ART using
     sc:url "https://github.com/mikpom/uslcount" .
 
 <https://bio.tools/usmpep> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
         edam:topic_2830,
@@ -483093,7 +515012,7 @@ USMPep is a simple recurrent neural network for MHC binding affinity prediction
     sc:url "https://github.com/nstrodt/USMPep" .
 
 <https://bio.tools/usort> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0622,
@@ -483114,7 +515033,7 @@ USMPep is a simple recurrent neural network for MHC binding affinity prediction
     biotools:primaryContact "Hao Chen" .
 
 <https://bio.tools/uspim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3077,
         edam:topic_3304,
         edam:topic_3382 ;
@@ -483129,7 +515048,7 @@ Selective Plane Illumination Microscopy (SPIM) is a fluorescence imaging techniq
     sc:url "https://uspim.org/#/" .
 
 <https://bio.tools/usr-vs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0602,
@@ -483145,7 +515064,7 @@ Selective Plane Illumination Microscopy (SPIM) is a fluorescence imaging techniq
     sc:url "http://usr.marseille.inserm.fr/" .
 
 <https://bio.tools/usspd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0781,
@@ -483161,7 +515080,7 @@ Selective Plane Illumination Microscopy (SPIM) is a fluorescence imaging techniq
     sc:url "https://swinepathogendb.org" .
 
 <https://bio.tools/ust> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3174,
         edam:topic_3361 ;
     sc:citation <https://doi.org/10.1101/2020.01.07.896928> ;
@@ -483176,7 +515095,7 @@ UST is a bioinformatics tool for constructing a spectrum-preserving string set (
     sc:url "https://github.com/medvedevgroup/UST/" .
 
 <https://bio.tools/ut-aim250> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0622,
         edam:topic_2640,
@@ -483194,7 +515113,7 @@ UST is a bioinformatics tool for constructing a spectrum-preserving string set (
     sc:url "https://github.com/chenlabgccri/UT-AIM250" .
 
 <https://bio.tools/ut-aki> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3303,
         edam:topic_3422 ;
@@ -483209,7 +515128,7 @@ UST is a bioinformatics tool for constructing a spectrum-preserving string set (
     biotools:primaryContact "Guy L. Reed" .
 
 <https://bio.tools/utgb_toolkit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0654 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btp350> ;
@@ -483225,7 +515144,7 @@ UST is a bioinformatics tool for constructing a spectrum-preserving string set (
     sc:url "http://utgenome.org/index.html" .
 
 <https://bio.tools/utldr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Plug-in" ;
     sc:applicationSubCategory edam:topic_0621,
@@ -483247,7 +515166,7 @@ UST is a bioinformatics tool for constructing a spectrum-preserving string set (
     sc:url "https://github.com/KDDComplexNetworkAnalysis/UTLDR" .
 
 <https://bio.tools/utopia> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0605 ;
     sc:citation <https://doi.org/10.1002/cfg.359>,
@@ -483262,8 +515181,25 @@ UST is a bioinformatics tool for constructing a spectrum-preserving string set (
     sc:softwareVersion "1.4.5" ;
     sc:url "http://utopia.cs.man.ac.uk/utopia/" .
 
+<https://bio.tools/utrad> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_3384,
+        edam:topic_3444,
+        edam:topic_3452 ;
+    sc:citation <https://doi.org/10.1016/J.NEUNET.2021.12.008>,
+        "pubmed:34973607" ;
+    sc:description "Anomaly detection and localization with U-Transformer." ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "UTRAD" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/gordon-chenmo/UTRAD" .
+
 <https://bio.tools/utrannotator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0203,
@@ -483281,7 +515217,7 @@ A VEP Plugin to annotate high-impact five prime UTR variants either creating new
     sc:url "https://github.com/ImperialCardioGenetics/UTRannotator" .
 
 <https://bio.tools/utrdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_3047,
         edam:topic_3308 ;
@@ -483299,7 +515235,7 @@ A VEP Plugin to annotate high-impact five prime UTR variants either creating new
     biotools:primaryContact "Graziano Pesole" .
 
 <https://bio.tools/utrsite> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_3047,
         edam:topic_3308 ;
@@ -483317,7 +515253,7 @@ A VEP Plugin to annotate high-impact five prime UTR variants either creating new
     biotools:primaryContact "Graziano Pesole" .
 
 <https://bio.tools/v-phaser> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654 ;
     sc:citation <https://doi.org/10.1186/1471-2164-14-674> ;
@@ -483332,14 +515268,13 @@ A VEP Plugin to annotate high-impact five prime UTR variants either creating new
 
 <https://bio.tools/v-pipe> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2975" ;
-            sc:name "Nucleic acid sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_2975" ] ;
+            sc:additionalType "http://edamontology.org/data_2975" ;
+            sc:name "Nucleic acid sequence (raw)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0920" ;
-            sc:name "Genotype/phenotype report" ;
-            sc:sameAs "http://edamontology.org/data_0920" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0920" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Genotype/phenotype report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0622,
@@ -483349,13 +515284,14 @@ A VEP Plugin to annotate high-impact five prime UTR variants either creating new
         edam:topic_3168 ;
     sc:author <https://orcid.org/0000-0002-7459-8186>,
         <https://orcid.org/0000-0003-4739-5110> ;
-    sc:citation <https://doi.org/10.1016/j.virusres.2016.09.016>,
+    sc:citation <https://doi.org/10.1016/j.coviro.2021.06.002>,
+        <https://doi.org/10.1016/j.epidem.2021.100480>,
+        <https://doi.org/10.1016/j.virusres.2016.09.016>,
         <https://doi.org/10.1093/bioinformatics/btab015>,
         <https://doi.org/10.1093/infdis/jiz094>,
         <https://doi.org/10.1101/2020.10.12.335919>,
         <https://doi.org/10.1101/2020.10.14.20212621>,
         <https://doi.org/10.1101/2021.01.08.21249379>,
-        <https://doi.org/10.1101/2021.03.05.21252520>,
         <https://doi.org/10.20944/preprints202005.0376.v1>,
         <https://doi.org/10.2807/1560-7917.es.2020.25.32.2001410>,
         <https://doi.org/10.3390/v10050256>,
@@ -483366,7 +515302,9 @@ A VEP Plugin to annotate high-impact five prime UTR variants either creating new
         "pubmed:29757994",
         "pubmed:30835266",
         "pubmed:33471068",
-        "pubmed:33802899" ;
+        "pubmed:33802899",
+        "pubmed:34153841",
+        "pubmed:34488035" ;
     sc:contributor <https://orcid.org/0000-0002-0573-6119> ;
     sc:description "Bioinformatics pipeline for the analysis of next-generation sequencing data derived from intra-host viral populations." ;
     sc:featureList edam:operation_0292,
@@ -483379,18 +515317,22 @@ A VEP Plugin to annotate high-impact five prime UTR variants either creating new
         "Mac" ;
     sc:softwareHelp <https://cbg-ethz.github.io/V-pipe/tutorial/sars-cov2/>,
         <https://cbg-ethz.github.io/V-pipe/usage/>,
+        <https://github.com/cbg-ethz/V-pipe/blob/master/README.md>,
+        <https://github.com/cbg-ethz/V-pipe/blob/master/config/README.md>,
         <https://github.com/cbg-ethz/V-pipe/wiki/benchmark>,
-        <https://github.com/cbg-ethz/V-pipe/wiki/getting-started>,
-        <https://github.com/cbg-ethz/V-pipe/wiki/options>,
-        <https://github.com/cbg-ethz/V-pipe/wiki/output>,
         <https://github.com/cbg-ethz/V-pipe/wiki/snakemake>,
         <https://youtu.be/pIby1UooK94>,
         <https://youtu.be/qHEUVJZsgE4> ;
+    sc:softwareVersion "v1.0",
+        "v2.0",
+        "v2.99.0",
+        "v2.99.1",
+        "v2.99.2" ;
     sc:url "https://cbg-ethz.github.io/V-pipe/" ;
     biotools:primaryContact "V-pipe Dev Team" .
 
 <https://bio.tools/v-sva> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
         edam:topic_2229,
@@ -483409,7 +515351,7 @@ To facilitate the interpretation of surrogate variables detected by algorithms i
     sc:url "https://vsva.jax.org/" .
 
 <https://bio.tools/v-xtractor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_3168,
         edam:topic_3174 ;
@@ -483424,7 +515366,7 @@ To facilitate the interpretation of surrogate variables detected by algorithms i
     biotools:primaryContact "Martin Hartmann" .
 
 <https://bio.tools/vConTACT> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0637,
         edam:topic_3174,
@@ -483444,7 +515386,7 @@ To facilitate the interpretation of surrogate variables detected by algorithms i
     sc:url "https://bitbucket.org/MAVERICLab/vcontact2" .
 
 <https://bio.tools/vaal> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3175 ;
     sc:citation "pubmed:19079253" ;
@@ -483454,7 +515396,7 @@ To facilitate the interpretation of surrogate variables detected by algorithms i
     sc:url "http://archive.broadinstitute.org/crd/vaal-manual" .
 
 <https://bio.tools/vaast> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_3175 ;
     sc:citation "pubmed:21700266" ;
@@ -483466,7 +515408,7 @@ To facilitate the interpretation of surrogate variables detected by algorithms i
     biotools:primaryContact "Mark Yandell" .
 
 <https://bio.tools/vacceed> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_3301,
@@ -483481,7 +515423,7 @@ To facilitate the interpretation of surrogate variables detected by algorithms i
     sc:url "https://github.com/sgoodswe/vacceed" .
 
 <https://bio.tools/vaccimm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0804,
         edam:topic_2640,
@@ -483499,8 +515441,24 @@ To facilitate the interpretation of surrogate variables detected by algorithms i
     biotools:primaryContact "Joachim von Eichborn",
         "Robert Preissner" .
 
+<https://bio.tools/vaccineda> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:citation <https://doi.org/10.1038/srep12478>,
+        "pmcid:PMC4515643",
+        "pubmed:26212482" ;
+    sc:description "‘VaccineDA’ has been made available to the scientific community as a webserver in order to assist the experimentalists in designing better IMODN based adjuvants using sequence information of the oligonucleotides." ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "vaccineda" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/vaccineda/> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/vaccineda/" .
+
 <https://bio.tools/vacpred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
         edam:topic_0780,
@@ -483515,7 +515473,7 @@ DSL provide the help to new learner of bioinformatics, genomics and personalized
     sc:url "http://www.deepaklab.com/vacpred" .
 
 <https://bio.tools/vacsol> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -483536,8 +515494,24 @@ DSL provide the help to new learner of bioinformatics, genomics and personalized
     sc:url "https://sourceforge.net/projects/vacsol/" ;
     biotools:primaryContact "Muhammad Rizwan" .
 
+<https://bio.tools/vactarbac> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:citation <https://doi.org/10.3389/fimmu.2018.02280>,
+        "pmcid:PMC6190870",
+        "pubmed:30356876" ;
+    sc:description "VacTarBac is a platform which stores vaccine candidate against several pathogenic bacteria." ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "vactarbac" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/vactarbac/> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/vactarbac/" .
+
 <https://bio.tools/vad-mm-gbsa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0166,
         edam:topic_0176,
@@ -483556,7 +515530,7 @@ DSL provide the help to new learner of bioinformatics, genomics and personalized
     biotools:primaryContact <https://orcid.org/0000-0001-7227-2580> .
 
 <https://bio.tools/vadar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -483579,7 +515553,7 @@ DSL provide the help to new learner of bioinformatics, genomics and personalized
     biotools:primaryContact "Contact form" .
 
 <https://bio.tools/vadir> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_3170,
@@ -483595,7 +515569,7 @@ DSL provide the help to new learner of bioinformatics, genomics and personalized
     biotools:primaryContact "Dr. Andrea Mariani" .
 
 <https://bio.tools/vadt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -483621,7 +515595,7 @@ VADT performs various filtering steps of a VCF file before testing for ASE. The
     sc:url "https://github.com/mjtiv/VADT" .
 
 <https://bio.tools/vaecox> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3170,
         edam:topic_3308,
@@ -483638,26 +515612,8 @@ Recent advances in deep learning have offered solutions to many biomedical tasks
     sc:name "VAECox" ;
     sc:url "https://github.com/dmis-lab/VAECox" .
 
-<https://bio.tools/vain> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0654,
-        edam:topic_3168,
-        edam:topic_3173,
-        edam:topic_3315 ;
-    sc:citation <https://doi.org/10.7287/PEERJ.PREPRINTS.1298V2> ;
-    sc:description """Efficient duplicate rate estimation from subsamples of sequencing libraries.
-
-In high-throughput sequencing (HTS) projects, the sequenced fragments’ duplicate rate is a key quality metric. A high duplicate rate may arise from a low amount of input DNA and many PCR cycles. Many methods for downstream analyses require that duplicates be removed. If the duplicate rate is high, most of the sequencing effort and money spent would have been in vain. Therefore, it is of considerable interest to estimate the duplicate rate after sequencing only a small subsample at low depth (multiplexed with other libraries) for quality control before running the full experiment. In this article, we provide an elementary mathematical framework and an efficient computational approach based on quadratic and linear optimization to estimate the true duplicate rate from a small subsample.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'up-sampling', 'duplicate', 'inverts', 'subsample'""" ;
-    sc:featureList edam:operation_2426 ;
-    sc:license "MIT" ;
-    sc:name "vain" ;
-    sc:url "https://doi.org/10.7287/PEERJ.PREPRINTS.1298V2" .
-
 <https://bio.tools/valencia> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3168,
         edam:topic_3174,
         edam:topic_3305,
@@ -483671,7 +515627,7 @@ In high-throughput sequencing (HTS) projects, the sequenced fragments’ duplica
     sc:url "http://github.com/ravel-lab/VALENCIA" .
 
 <https://bio.tools/valerie> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3308,
         edam:topic_3320,
@@ -483694,7 +515650,7 @@ Alternative splicing produces a variety of different protein products from a giv
     sc:url "https://cran.r-project.org/web/packages/VALERIE/index.html" .
 
 <https://bio.tools/valet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0196,
@@ -483709,7 +515665,7 @@ Alternative splicing produces a variety of different protein products from a giv
     biotools:primaryContact "Maryland Bioinformatics Labs" .
 
 <https://bio.tools/valfold> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0654 ;
@@ -483725,14 +515681,14 @@ Alternative splicing produces a variety of different protein products from a giv
 
 <https://bio.tools/validatordb> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1127" ;
-            sc:name "PDB ID" ;
-            sc:sameAs "http://edamontology.org/data_1127" ] ;
+            sc:additionalType "http://edamontology.org/data_1127" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "PDB ID" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1539" ;
-            sc:name "Protein structural quality report" ;
-            sc:sameAs "http://edamontology.org/data_1539" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1539" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Protein structural quality report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0154 ;
@@ -483759,7 +515715,7 @@ Alternative splicing produces a variety of different protein products from a giv
         "Primacy Contact" .
 
 <https://bio.tools/validichro> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0130,
@@ -483783,7 +515739,7 @@ Alternative splicing produces a variety of different protein products from a giv
     sc:url "http://valispec.cryst.bbk.ac.uk/circularDichroism/ValiDichro/upload.html" .
 
 <https://bio.tools/validsplicemut> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2885,
         edam:topic_3170,
         edam:topic_3320,
@@ -483806,10 +515762,10 @@ Information Theory is proven to accurately predict the impact a mutation has on
 
 <https://bio.tools/valr> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3583" ;
+            sc:name "Sequence variations" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_2885,
@@ -483832,14 +515788,12 @@ Information Theory is proven to accurately predict the impact a mutation has on
 
 <https://bio.tools/valtrendsdb> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1127" ;
-            sc:name "PDB ID" ;
-            sc:sameAs "http://edamontology.org/data_1127" ] ;
+            sc:additionalType "http://edamontology.org/data_1127" ;
+            sc:name "PDB ID" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:name "Image" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0092 ;
     sc:author "Vladimír Horský" ;
@@ -483856,7 +515810,7 @@ Information Theory is proven to accurately predict the impact a mutation has on
     sc:url "http://webchem.ncbr.muni.cz/ValTrendsDB/index.php" .
 
 <https://bio.tools/valworkbench> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0203,
@@ -483872,7 +515826,7 @@ Information Theory is proven to accurately predict the impact a mutation has on
     sc:url "http://www.math.unipa.it/~raffaele/valworkbench/" .
 
 <https://bio.tools/vam> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0602,
         edam:topic_0625,
@@ -483892,7 +515846,7 @@ Distribution of squared modified Mahalanobis distances computed using the VAM me
     sc:url "http://www.dartmouth.edu/~hrfrost/VAM" .
 
 <https://bio.tools/vamb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0196,
@@ -483914,7 +515868,7 @@ Vamb is a metagenomic binner which feeds sequence composition information from a
     sc:url "https://github.com/RasmussenLab/vamb" .
 
 <https://bio.tools/vampire> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2269,
@@ -483935,7 +515889,7 @@ Vamb is a metagenomic binner which feeds sequence composition information from a
     biotools:primaryContact "Carol Kling" .
 
 <https://bio.tools/vampire-gwas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0625,
@@ -483953,7 +515907,7 @@ Variant Annotation Method Pointing to Interesting Regulatory Effects.""" ;
     sc:url "http://shiny.bios.unc.edu/vampire/" .
 
 <https://bio.tools/vampr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0602,
         edam:topic_0625,
@@ -483970,7 +515924,7 @@ Variant Annotation Method Pointing to Interesting Regulatory Effects.""" ;
     sc:url "https://github.com/jiwoongbio/VAMPr" .
 
 <https://bio.tools/vamps> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_3056,
@@ -483990,7 +515944,7 @@ Variant Annotation Method Pointing to Interesting Regulatory Effects.""" ;
     biotools:primaryContact "Contact form" .
 
 <https://bio.tools/vancomycin_TDM> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3375 ;
     sc:citation <https://doi.org/10.3390/PHARMACEUTICS11050224>,
@@ -484007,7 +515961,7 @@ Variant Annotation Method Pointing to Interesting Regulatory Effects.""" ;
     biotools:primaryContact <https://orcid.org/0000-0002-9976-5120> .
 
 <https://bio.tools/vanesa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0602,
@@ -484024,7 +515978,7 @@ Variant Annotation Method Pointing to Interesting Regulatory Effects.""" ;
     sc:url "http://agbi.techfak.uni-bielefeld.de/vanesa/" .
 
 <https://bio.tools/vanillaice> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0622,
@@ -484049,7 +516003,7 @@ Variant Annotation Method Pointing to Interesting Regulatory Effects.""" ;
     biotools:primaryContact "Robert Scharpf" .
 
 <https://bio.tools/vanno> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0199,
@@ -484067,7 +516021,7 @@ Variant Annotation Method Pointing to Interesting Regulatory Effects.""" ;
     biotools:primaryContact "Support" .
 
 <https://bio.tools/vannoportal> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
@@ -484090,7 +516044,7 @@ Variant Annotation Method Pointing to Interesting Regulatory Effects.""" ;
     sc:url "http://mulinlab.org/vportal" .
 
 <https://bio.tools/vanted> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2259,
@@ -484110,7 +516064,7 @@ Variant Annotation Method Pointing to Interesting Regulatory Effects.""" ;
     sc:url "https://www.cls.uni-konstanz.de/software/vanted/" .
 
 <https://bio.tools/vap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0203,
@@ -484132,7 +516086,7 @@ Variant Annotation Method Pointing to Interesting Regulatory Effects.""" ;
     biotools:primaryContact "VAP Support" .
 
 <https://bio.tools/vap-variant> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3308,
         edam:topic_3673 ;
@@ -484147,7 +516101,7 @@ Variant Annotation Method Pointing to Interesting Regulatory Effects.""" ;
     sc:url "https://modupeore.github.io/VAP/" .
 
 <https://bio.tools/vapor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
         edam:topic_3673 ;
@@ -484162,7 +516116,7 @@ Variant Annotation Method Pointing to Interesting Regulatory Effects.""" ;
     sc:url "https://github.com/connor-lab/vapor" .
 
 <https://bio.tools/vapr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0622,
@@ -484181,7 +516135,7 @@ Variant Annotation Method Pointing to Interesting Regulatory Effects.""" ;
         "Kathleen Fisch" .
 
 <https://bio.tools/vapros> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_1775,
@@ -484197,7 +516151,7 @@ Variant Annotation Method Pointing to Interesting Regulatory Effects.""" ;
     biotools:primaryContact "Contact form" .
 
 <https://bio.tools/vapur> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0218,
         edam:topic_0634,
@@ -484218,7 +516172,7 @@ Enter a chemical or protein/gene and let Vapur find related bio-molecules in 150
     sc:url "https://tabilab.cmpe.boun.edu.tr/vapur/" .
 
 <https://bio.tools/varadb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0749,
         edam:topic_2885,
@@ -484235,14 +516189,14 @@ Enter a chemical or protein/gene and let Vapur find related bio-molecules in 150
 
 <https://bio.tools/varaft> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence variations" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3053,
@@ -484269,10 +516223,10 @@ Enter a chemical or protein/gene and let Vapur find related bio-molecules in 150
 
 <https://bio.tools/varan> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_3015" ;
+            sc:name "Sequence alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3053 ;
     sc:author "Ketil Malde" ;
@@ -484291,7 +516245,7 @@ Enter a chemical or protein/gene and let Vapur find related bio-molecules in 150
     biotools:primaryContact "Ketil Malde" .
 
 <https://bio.tools/varben> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0769,
         edam:topic_2640,
@@ -484308,7 +516262,7 @@ Next-generation sequencing (NGS) is increasingly being adopted as a valuable met
     sc:url "https://github.com/nccl-jmli/VarBen" .
 
 <https://bio.tools/varca> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_3169,
@@ -484330,7 +516284,7 @@ Next-generation sequencing (NGS) is increasingly being adopted as a valuable met
     sc:url "https://github.com/aryarm/varCA" .
 
 <https://bio.tools/varcon> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0196,
         edam:topic_2885,
@@ -484349,7 +516303,7 @@ Reporting of a single nucleotide variant (SNV) follows the Sequence Variant Nome
     sc:url "https://github.com/caggtaagtat/VarConTables" .
 
 <https://bio.tools/vardetect> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0199,
@@ -484367,14 +516321,14 @@ Reporting of a single nucleotide variant (SNV) follows the Sequence Variant Nome
 
 <https://bio.tools/vardict> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Sequence alignment" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence variations" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:citation <https://doi.org/10.1093/nar/gkw227> ;
     sc:description "VarDict is an ultra sensitive variant caller for both single and paired sample variant calling from BAM files. VarDict implements several novel features such as amplicon bias aware variant calling from targeted sequencing experiments, rescue of long indels by realigning bwa soft clipped reads and better scalability than many Java based variant callers." ;
     sc:featureList edam:operation_3227 ;
@@ -484383,14 +516337,14 @@ Reporting of a single nucleotide variant (SNV) follows the Sequence Variant Nome
 
 <https://bio.tools/vardom> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2955" ;
-            sc:name "Sequence report" ;
-            sc:sameAs "http://edamontology.org/data_2955" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2955" ;
+            sc:encodingFormat "http://edamontology.org/format_2333" ;
+            sc:name "Sequence report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1371/journal.pcbi.1000933> ;
@@ -484408,10 +516362,10 @@ Reporting of a single nucleotide variant (SNV) follows the Sequence Variant Nome
 
 <https://bio.tools/vargenius-hzd> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2534" ;
-            sc:name "Sequence attribute" ;
-            sc:sameAs "http://edamontology.org/data_2534" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2534" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence attribute" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Plug-in" ;
     sc:applicationSubCategory edam:topic_0622,
@@ -484433,7 +516387,7 @@ Reporting of a single nucleotide variant (SNV) follows the Sequence Variant Nome
     sc:url "https://github.com/frankMusacchia/VarGenius-HZD" .
 
 <https://bio.tools/vargibbs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0097,
@@ -484447,8 +516401,32 @@ Reporting of a single nucleotide variant (SNV) follows the Sequence Variant Nome
     sc:softwareHelp <https://bioinf.fisica.ufmg.br/software/vargibbs-2.0/vargibbs-user-manual-2.0.pdf> ;
     sc:url "https://sites.google.com/site/geraldweberufmg/vargibbs" .
 
+<https://bio.tools/vargwas> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Library" ;
+    sc:applicationSubCategory edam:topic_0625,
+        edam:topic_2885,
+        edam:topic_3337,
+        edam:topic_3360,
+        edam:topic_3517 ;
+    sc:citation <https://doi.org/10.1101/2022.01.05.21268406> ;
+    sc:description "Hypothesis-free detection of gene-interaction effects on biomarker concentration in UK Biobank using variance prioritisation." ;
+    sc:featureList edam:operation_0282,
+        edam:operation_0337,
+        edam:operation_3659,
+        edam:operation_3791 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "varGWAS" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://mrcieu.github.io/varGWAS/> ;
+    sc:url "https://github.com/MRCIEU/varGWAS" .
+
 <https://bio.tools/varia> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0203,
         edam:topic_0623,
@@ -484465,7 +516443,7 @@ Varia is a tool to predict var genes based on short 150-200 base pair sequences
     sc:url "https://github.com/GCJMackenzie/Varia" .
 
 <https://bio.tools/variable_LCV> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0153,
         edam:topic_3055,
         edam:topic_3298,
@@ -484481,14 +516459,14 @@ Varia is a tool to predict var genes based on short 150-200 base pair sequences
 
 <https://bio.tools/variancepartition> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3112" ;
-            sc:name "Gene expression matrix" ;
-            sc:sameAs "http://edamontology.org/data_3112" ] ;
+            sc:additionalType "http://edamontology.org/data_3112" ;
+            sc:encodingFormat "http://edamontology.org/format_2058" ;
+            sc:name "Gene expression matrix" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -484511,10 +516489,9 @@ Varia is a tool to predict var genes based on short 150-200 base pair sequences
 
 <https://bio.tools/variant> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:name "Sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0622 ;
@@ -484534,7 +516511,7 @@ Varia is a tool to predict var genes based on short 150-200 base pair sequences
     biotools:primaryContact "babelomics@cipf.es  (Francisco García)" .
 
 <https://bio.tools/variant-calling-at-scale> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "A scalable, parallel and efficient implementation of pre-processing and variant calling workflows on cluster environments for next generation sequencing data." ;
     sc:featureList edam:operation_2945 ;
     sc:name "VariantCalling-at-Scale" ;
@@ -484542,7 +516519,7 @@ Varia is a tool to predict var genes based on short 150-200 base pair sequences
     sc:url "https://github.com/abs-tudelft/variant-calling-at-scale" .
 
 <https://bio.tools/variant_ranker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0199,
@@ -484563,14 +516540,14 @@ Varia is a tool to predict var genes based on short 150-200 base pair sequences
 
 <https://bio.tools/variantannotation> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence variations" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2885,
@@ -484593,7 +516570,7 @@ Varia is a tool to predict var genes based on short 150-200 base pair sequences
     biotools:primaryContact "Valerie Obenchain" .
 
 <https://bio.tools/variantbam> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0160,
@@ -484608,7 +516585,7 @@ Varia is a tool to predict var genes based on short 150-200 base pair sequences
     sc:url "https://github.com/jwalabroad/VariantBam" .
 
 <https://bio.tools/variantclassifier> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_2885 ;
     sc:citation "pubmed:20626889" ;
@@ -484623,14 +516600,14 @@ Varia is a tool to predict var genes based on short 150-200 base pair sequences
 
 <https://bio.tools/variantfiltering> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ],
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence variations" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2885 ;
@@ -484651,7 +516628,7 @@ Varia is a tool to predict var genes based on short 150-200 base pair sequences
     biotools:primaryContact "Robert Castelo" .
 
 <https://bio.tools/variantmetacaller> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0199,
@@ -484669,13 +516646,13 @@ Varia is a tool to predict var genes based on short 150-200 base pair sequences
     biotools:primaryContact "Support" .
 
 <https://bio.tools/variantspark> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "VariantSpark is a tailored Apache Spark-based machine learning framework that creates insights from high-dimensional data, including genomics and clinical data. VariantSpark’s machine learning method overcomes the limitation of traditional approaches that requires data to be eliminated or identifying only independent markers. Especially complex events are triggered by multiple contributing factors. VariantSpark is able to detect such sets of interacting features thereby identifying more accurate predictive markers. VariantSpark builds on the Random Forest Machine Learning method, which allows to interrogate the tree-based models and identify which features contributed in what proportion to the overall prediction outcome. We also provide a visualization engine that shows the interplay between features and their label association." ;
     sc:name "VariantSpark" ;
     sc:url "https://bioinformatics.csiro.au/variantspark/" .
 
 <https://bio.tools/variantspark-gwas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0634,
         edam:topic_3474,
@@ -484694,7 +516671,7 @@ variant-spark is a scalable toolkit for genome-wide association studies optimize
     sc:url "https://bioinformatics.csiro.au/variantspark/" .
 
 <https://bio.tools/varianttools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0199,
@@ -484715,7 +516692,7 @@ variant-spark is a scalable toolkit for genome-wide association studies optimize
     biotools:primaryContact "Michael Lawrence" .
 
 <https://bio.tools/variation_toolkit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_2885 ;
@@ -484733,14 +516710,14 @@ variant-spark is a scalable toolkit for genome-wide association studies optimize
 
 <https://bio.tools/variationget> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence record" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0199,
@@ -484776,7 +516753,7 @@ variant-spark is a scalable toolkit for genome-wide association studies optimize
     sc:url "http://www.bioinformatics.nl/cgi-bin/emboss/variationget" .
 
 <https://bio.tools/variationhunter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3175 ;
     sc:citation "pubmed:19447966" ;
@@ -484790,7 +516767,7 @@ variant-spark is a scalable toolkit for genome-wide association studies optimize
     biotools:primaryContact "Support" .
 
 <https://bio.tools/varid> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_2885,
@@ -484810,7 +516787,7 @@ variant-spark is a scalable toolkit for genome-wide association studies optimize
     biotools:primaryContact "VARID support" .
 
 <https://bio.tools/varid-cell> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
         edam:topic_2229,
@@ -484827,7 +516804,7 @@ variant-spark is a scalable toolkit for genome-wide association studies optimize
     sc:url "https://github.com/dgrun/VarID_analysis" .
 
 <https://bio.tools/varied> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -484850,7 +516827,7 @@ An integrated database of variants and gene expression profiles for genetic dise
     sc:url "http://varied.cgm.ntu.edu.tw/" .
 
 <https://bio.tools/varifast> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0199,
         edam:topic_0622,
@@ -484869,7 +516846,7 @@ A tool for variant filtering.""" ;
     sc:url "https://github.com/bioxsjtu/VariFAST" .
 
 <https://bio.tools/variobox> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0092,
@@ -484886,8 +516863,36 @@ A tool for variant filtering.""" ;
     sc:softwareHelp <http://bioinformatics.ua.pt/software/variobox/> ;
     sc:url "http://bioinformatics.ua.pt/software/variobox/" .
 
+<https://bio.tools/variomes> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2295" ;
+            sc:name "Gene ID" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_0203,
+        edam:topic_0634,
+        edam:topic_2640,
+        edam:topic_3068 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC146>,
+        "pmcid:PMC9048643",
+        "pubmed:35274687" ;
+    sc:description "A high recall search engine to support the curation of genomic variants." ;
+    sc:featureList edam:operation_2421,
+        edam:operation_2422,
+        edam:operation_3226,
+        edam:operation_3435,
+        edam:operation_3504 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "Variomes" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://candy.hesge.ch/Variomes" .
+
 <https://bio.tools/variowatch> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0634,
@@ -484907,7 +516912,7 @@ A tool for variant filtering.""" ;
     sc:url "http://grch38.genepipe.ncgm.sinica.edu.tw/variowatch/main.do" .
 
 <https://bio.tools/varlociraptor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0749,
         edam:topic_2640 ;
@@ -484920,7 +516925,7 @@ A tool for variant filtering.""" ;
     sc:url "https://varlociraptor.github.io" .
 
 <https://bio.tools/varmod> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0166,
         edam:topic_0602,
@@ -484942,7 +516947,7 @@ A tool for variant filtering.""" ;
     biotools:primaryContact "Mark Wass" .
 
 <https://bio.tools/varmole> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0602,
         edam:topic_0625,
@@ -484959,7 +516964,7 @@ Population studies such as GWAS have identified a variety of genomic variants as
     sc:url "https://github.com/daifengwanglab/Varmole" .
 
 <https://bio.tools/varprism> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0622,
@@ -484979,7 +516984,7 @@ Population studies such as GWAS have identified a variety of genomic variants as
     biotools:primaryContact "Contact form" .
 
 <https://bio.tools/varsan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0634,
@@ -485004,11 +517009,16 @@ Population studies such as GWAS have identified a variety of genomic variants as
     sc:url "https://github.com/UIUCSinhaLab/VarSAn" .
 
 <https://bio.tools/varscan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2885,
         edam:topic_3168 ;
-    sc:citation "pubmed:19542151" ;
+    sc:citation <https://doi.org/10.1093/bioinformatics/btp373>,
+        <https://doi.org/10.1101/gr.129684.111>,
+        "pmcid:PMC2734323",
+        "pmcid:PMC3290792",
+        "pubmed:19542151",
+        "pubmed:22300766" ;
     sc:description "VarScan, an open source tool for variant detection that is compatible with several short read align-ers." ;
     sc:featureList edam:operation_3227 ;
     sc:name "VarScan" ;
@@ -485020,7 +517030,7 @@ Population studies such as GWAS have identified a variety of genomic variants as
     biotools:primaryContact "Support Forum" .
 
 <https://bio.tools/varsifter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0199,
@@ -485037,7 +517047,7 @@ Population studies such as GWAS have identified a variety of genomic variants as
     sc:url "http://research.nhgri.nih.gov/software/VarSifter/" .
 
 <https://bio.tools/varsome> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web API",
         "Web application" ;
@@ -485060,7 +517070,7 @@ Population studies such as GWAS have identified a variety of genomic variants as
     biotools:primaryContact "Saphetor SA" .
 
 <https://bio.tools/varstack> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0199,
         edam:topic_2640 ;
@@ -485075,7 +517085,7 @@ Please enter your mutation's gene name, peptide change, and coding strand change
     sc:url "https://varstack.brown.edu" .
 
 <https://bio.tools/varwatch> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0622,
@@ -485095,7 +517105,7 @@ VarWatch is a tool for professional human geneticists, genetic counselors and re
     sc:url "https://github.com/broderF/varwatch" .
 
 <https://bio.tools/vas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0622,
@@ -485114,7 +517124,7 @@ VarWatch is a tool for professional human geneticists, genetic counselors and re
     biotools:primaryContact "Kevin Y Yip" .
 
 <https://bio.tools/vasp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0166,
         edam:topic_0736 ;
@@ -485133,7 +517143,7 @@ VarWatch is a tool for professional human geneticists, genetic counselors and re
     sc:url "https://www.vasp.at" .
 
 <https://bio.tools/vast> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -485153,7 +517163,7 @@ VarWatch is a tool for professional human geneticists, genetic counselors and re
     biotools:primaryContact "Stephen HBryant" .
 
 <https://bio.tools/vast-variant> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Suite" ;
     sc:applicationSubCategory edam:topic_2885 ;
@@ -485172,14 +517182,14 @@ VarWatch is a tool for professional human geneticists, genetic counselors and re
 
 <https://bio.tools/vastdb> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1025" ;
-            sc:name "Gene identifier" ;
-            sc:sameAs "http://edamontology.org/data_1025" ] ;
+            sc:additionalType "http://edamontology.org/data_1025" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Gene identifier" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2080" ;
-            sc:name "Database search results" ;
-            sc:sameAs "http://edamontology.org/data_2080" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2080" ;
+            sc:encodingFormat "http://edamontology.org/format_2060" ;
+            sc:name "Database search results" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_3170,
         edam:topic_3320 ;
@@ -485197,7 +517207,7 @@ VarWatch is a tool for professional human geneticists, genetic counselors and re
     sc:url "http://vastdb.crg.eu/" .
 
 <https://bio.tools/vat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0634,
@@ -485218,7 +517228,7 @@ VarWatch is a tool for professional human geneticists, genetic counselors and re
     sc:url "http://opengenetics.ca/2015/02/25/variant-assessment-tool-vat/" .
 
 <https://bio.tools/vawk> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:author "Colby Chiang" ;
@@ -485229,8 +517239,36 @@ VarWatch is a tool for professional human geneticists, genetic counselors and re
     sc:url "https://github.com/cc2qe/vawk" ;
     biotools:primaryContact "Colby Chiang" .
 
+<https://bio.tools/vaxi-dl> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2291" ;
+            sc:name "UniProt ID" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_2830,
+        edam:topic_3324,
+        edam:topic_3379,
+        edam:topic_3474,
+        edam:topic_3966 ;
+    sc:citation <https://doi.org/10.1016/J.COMPBIOMED.2022.105401>,
+        "pubmed:35381451" ;
+    sc:description "A web-based deep learning server to identify potential vaccine candidates." ;
+    sc:featureList edam:operation_0252,
+        edam:operation_0416,
+        edam:operation_3461 ;
+    sc:isAccessibleForFree true ;
+    sc:name "Vaxi-DL" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://vac.kamalrawal.in/vaxidl/" .
+
 <https://bio.tools/vaxign-ml> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2830,
         edam:topic_3324,
         edam:topic_3379,
@@ -485249,7 +517287,7 @@ Vaxign-ML (Vaxign - Machine Learning) is a machine learning-based vaccine candid
     sc:url "http://www.violinet.org/vaxign/vaxign-ml" .
 
 <https://bio.tools/vaximmutordb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0749,
@@ -485271,8 +517309,24 @@ Vaxign-ML (Vaxign - Machine Learning) is a machine learning-based vaccine candid
     biotools:primaryContact "Guanming Wu",
         "Yongqun He" .
 
+<https://bio.tools/vaxinpad> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:citation <https://doi.org/10.1186/s12967-018-1560-1>,
+        "pmcid:PMC6029051",
+        "pubmed:29970096" ;
+    sc:description "A website for designing peptide based vaccine adjuvants." ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "vaxinpad" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/vaxinpad/index.php> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/vaxinpad/index.php" .
+
 <https://bio.tools/vbmp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2269,
@@ -485295,7 +517349,7 @@ to the full posterior.""" ;
     biotools:primaryContact "Nicola Lama" .
 
 <https://bio.tools/vbt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0625,
@@ -485317,7 +517371,7 @@ VBT provides a set of tools that is used for aligner/variant calling benchmarkin
     sc:url "https://github.com/sbg/VBT-TrioAnalysis.git" .
 
 <https://bio.tools/vcake> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0196 ;
     sc:citation "pubmed:17893086" ;
@@ -485333,7 +517387,7 @@ VBT provides a set of tools that is used for aligner/variant calling benchmarkin
     biotools:primaryContact "William Jeck" .
 
 <https://bio.tools/vcascale> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3316,
@@ -485354,7 +517408,7 @@ VBT provides a set of tools that is used for aligner/variant calling benchmarkin
     sc:url "https://github.com/abs-tudelft/variant-calling-at-scale" .
 
 <https://bio.tools/vce> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_3056 ;
     sc:citation <https://doi.org/10.1186/1297-9686-26-6-537> ;
@@ -485368,7 +517422,7 @@ VBT provides a set of tools that is used for aligner/variant calling benchmarkin
     sc:url "https://www.tzv.fal.de/index.html" .
 
 <https://bio.tools/vcf2arlequin> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:description "Python tool to convert vcf files to Arlequin format." ;
@@ -485380,7 +517434,7 @@ VBT provides a set of tools that is used for aligner/variant calling benchmarkin
     sc:url "https://www.dropbox.com/s/otui4ea6finnecs/VCF2Arlequin_Sept%202016.7z?dl=0" .
 
 <https://bio.tools/vcf2caps> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0780,
@@ -485401,7 +517455,7 @@ VBT provides a set of tools that is used for aligner/variant calling benchmarkin
     biotools:primaryContact <https://orcid.org/0000-0003-1925-8178> .
 
 <https://bio.tools/vcf2diploid> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0622,
@@ -485416,7 +517470,7 @@ VBT provides a set of tools that is used for aligner/variant calling benchmarkin
     sc:url "http://alleleseq.gersteinlab.org/tools.html" .
 
 <https://bio.tools/vcf2fhir> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_2640,
@@ -485436,7 +517490,7 @@ VBT provides a set of tools that is used for aligner/variant calling benchmarkin
     biotools:primaryContact <https://orcid.org/0000-0002-6235-6964> .
 
 <https://bio.tools/vcf2gwas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0769,
@@ -485457,7 +517511,7 @@ VBT provides a set of tools that is used for aligner/variant calling benchmarkin
     sc:url "https://github.com/frankvogt/vcf2gwas" .
 
 <https://bio.tools/vcf2networks> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Script" ;
     sc:applicationSubCategory edam:topic_0199,
@@ -485477,8 +517531,63 @@ VBT provides a set of tools that is used for aligner/variant calling benchmarkin
         <https://bitbucket.org/dalloliogm/vcf2networks/src/tip/docs/installing.rst> ;
     sc:url "https://bitbucket.org/dalloliogm/vcf2networks" .
 
+<https://bio.tools/vcf2prot> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Protein sequence" ] ;
+    bsc:output [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0080,
+        edam:topic_0121,
+        edam:topic_3577,
+        edam:topic_3676,
+        edam:topic_3922 ;
+    sc:citation <https://doi.org/10.1101/2022.01.21.477084> ;
+    sc:description "Generating sample-specific FASTA files from a consequence called VCF-file and a reference proteome." ;
+    sc:featureList edam:operation_3227,
+        edam:operation_3359,
+        edam:operation_3695 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "VCF2Prot" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/ikmb/vcf2prot" .
+
+<https://bio.tools/vcf2tsv> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence variations" ] ;
+    bsc:output [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2526" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Text data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Script" ;
+    sc:applicationSubCategory edam:topic_0622 ;
+    sc:author <https://orcid.org/0000-0001-8468-2050> ;
+    sc:description "A Python script that converts genomic variant data encoded in VCF format into a tab-separated values file." ;
+    sc:featureList edam:operation_3434 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "vcf2tsv" ;
+    sc:operatingSystem "Linux",
+        "Mac" ;
+    sc:softwareHelp <https://github.com/sigven/vcf2tsv> ;
+    sc:softwareVersion "0.3.7.1" ;
+    sc:url "https://github.com/sigven/vcf2tsv" ;
+    biotools:primaryContact <https://orcid.org/0000-0001-8468-2050> .
+
 <https://bio.tools/vcfPytools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:description "Set of tools for vcf file manipulation." ;
@@ -485493,18 +517602,18 @@ VBT provides a set of tools that is used for aligner/variant calling benchmarkin
 
 <https://bio.tools/vcf_consensus> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ] ;
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence variations" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0080 ;
@@ -485524,22 +517633,22 @@ VBT provides a set of tools that is used for aligner/variant calling benchmarkin
 
 <https://bio.tools/vcf_intersect> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ],
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence variations" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ],
+            sc:additionalType "http://edamontology.org/data_3002" ;
+            sc:encodingFormat "http://edamontology.org/format_3003" ;
+            sc:name "Annotation track" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3002" ;
-            sc:name "Annotation track" ;
-            sc:sameAs "http://edamontology.org/data_3002" ] ;
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence variations" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence variations" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0622,
@@ -485560,14 +517669,14 @@ VBT provides a set of tools that is used for aligner/variant calling benchmarkin
 
 <https://bio.tools/vcf_remove_filtered> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ] ;
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence variations" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence variations" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0199,
@@ -485588,18 +517697,18 @@ VBT provides a set of tools that is used for aligner/variant calling benchmarkin
 
 <https://bio.tools/vcf_substract> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ],
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence variations" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ] ;
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence variations" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence variations" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0199,
@@ -485620,7 +517729,7 @@ VBT provides a set of tools that is used for aligner/variant calling benchmarkin
     biotools:primaryContact "Galaxy Support Team" .
 
 <https://bio.tools/vcfanno> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0219 ;
@@ -485636,7 +517745,7 @@ VBT provides a set of tools that is used for aligner/variant calling benchmarkin
     biotools:primaryContact "Brent Pedersen" .
 
 <https://bio.tools/vcfdbr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0625,
         edam:topic_0769,
@@ -485659,14 +517768,14 @@ VCFdbR was designed with Linux-based high performance computing clusters in mind
 
 <https://bio.tools/vcffilterjs> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1050" ;
-            sc:name "File name" ;
-            sc:sameAs "http://edamontology.org/data_1050" ] ;
+            sc:additionalType "http://edamontology.org/data_1050" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "File name" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1050" ;
-            sc:name "File name" ;
-            sc:sameAs "http://edamontology.org/data_1050" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1050" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "File name" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:author "Pierre Lindenbaum" ;
@@ -485689,14 +517798,14 @@ VCFdbR was designed with Linux-based high performance computing clusters in mind
 
 <https://bio.tools/vcfhead> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1050" ;
-            sc:name "File name" ;
-            sc:sameAs "http://edamontology.org/data_1050" ] ;
+            sc:additionalType "http://edamontology.org/data_1050" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "File name" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1050" ;
-            sc:name "File name" ;
-            sc:sameAs "http://edamontology.org/data_1050" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1050" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "File name" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:author "Pierre Lindenbaum" ;
@@ -485718,7 +517827,7 @@ VCFdbR was designed with Linux-based high performance computing clusters in mind
     biotools:primaryContact "Pierre Lindenbaum" .
 
 <https://bio.tools/vcflib> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_3071 ;
@@ -485735,7 +517844,7 @@ VCFdbR was designed with Linux-based high performance computing clusters in mind
     biotools:primaryContact "GitHub Issues" .
 
 <https://bio.tools/vcfr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0622,
@@ -485756,7 +517865,7 @@ VCFdbR was designed with Linux-based high performance computing clusters in mind
     biotools:primaryContact "Brian J. Knaus" .
 
 <https://bio.tools/vcfshark> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:citation <https://doi.org/10.1101/2020.12.18.423437> ;
     sc:description """how to squeeze a VCF file.
 
@@ -485768,7 +517877,7 @@ VCFShark is a tool to compress any VCF file. It achieves compression ratios up t
     sc:url "https://github.com/refresh-bio/vcfshark" .
 
 <https://bio.tools/vcftools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btr330>,
@@ -485788,7 +517897,7 @@ VCFShark is a tool to compress any VCF file. It achieves compression ratios up t
     biotools:primaryContact "Mailing list" .
 
 <https://bio.tools/vcftotree> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0622,
@@ -485808,14 +517917,14 @@ VCFShark is a tool to compress any VCF file. It achieves compression ratios up t
 
 <https://bio.tools/vcfutils> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1930" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3071,
@@ -485834,7 +517943,7 @@ VCFShark is a tool to compress any VCF file. It achieves compression ratios up t
     biotools:primaryContact "Galaxy Support Team" .
 
 <https://bio.tools/vcfview> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0622,
         edam:topic_2640,
@@ -485855,7 +517964,7 @@ An interactive Rshiny tool designed to support the evaluation of somatic mutatio
     sc:url "https://github.com/BrianOSullivanGit/vcfView" .
 
 <https://bio.tools/vcnet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -485874,7 +517983,7 @@ An interactive Rshiny tool designed to support the evaluation of somatic mutatio
         "Nelson Leung-Sang Tang" .
 
 <https://bio.tools/vcombat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3068,
         edam:topic_3315,
@@ -485893,7 +518002,7 @@ Simulate and visualize predictions of bacterial killing based on the kinetics of
     sc:url "https://combat-bacteria.org/" .
 
 <https://bio.tools/vcppt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_2275 ;
     sc:description "Independently developed extension for Vina, a program for flexible ligand docking. Carry out high-throughput screening of compound libraries with Vina and cluster resulting PDB files of ligands by binding energies and by binding positions. Results processing functions do not require Vina installed. Screening scale is unlimited." ;
@@ -485903,8 +518012,26 @@ Simulate and visualize predictions of bacterial killing based on the kinetics of
     sc:softwareHelp <http://biochemlabsolutions.com/Molecule%20Docking/INSTRUCTIONS/Installation%20instructions.html> ;
     sc:url "http://biochemlabsolutions.com/Molecule%20Docking/Molecule_Docking.html" .
 
+<https://bio.tools/vcrnet> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_3382 ;
+    sc:citation <https://doi.org/10.1109/TIP.2022.3144892>,
+        "pubmed:35081029" ;
+    sc:description "Visual Compensation Restoration Network for No-Reference Image Quality Assessment." ;
+    sc:featureList edam:operation_3443,
+        edam:operation_3925,
+        edam:operation_3928 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "VCRNet" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/NUIST-Videocoding/VCRNet" .
+
 <https://bio.tools/vdjpipe> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3170 ;
     sc:citation <https://doi.org/10.1186/s12859-017-1853-z> ;
@@ -485917,7 +518044,7 @@ Simulate and visualize predictions of bacterial killing based on the kinetics of
     biotools:primaryContact "Lindsay G. Cowell" .
 
 <https://bio.tools/vdjpuzzle> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_2830,
@@ -485933,7 +518060,7 @@ Simulate and visualize predictions of bacterial killing based on the kinetics of
     biotools:primaryContact "Fabio Luciani" .
 
 <https://bio.tools/vdjseq-solver> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_3170 ;
@@ -485948,14 +518075,14 @@ Simulate and visualize predictions of bacterial killing based on the kinetics of
 
 <https://bio.tools/vdjsolver> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Protein features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
@@ -485974,7 +518101,7 @@ Simulate and visualize predictions of bacterial killing based on the kinetics of
     biotools:primaryContact <http://orcid.org/0000-0001-7885-4311> .
 
 <https://bio.tools/vdjview> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_2640,
         edam:topic_2830,
@@ -485992,7 +518119,7 @@ Simulate and visualize predictions of bacterial killing based on the kinetics of
     sc:url "https://bitbucket.org/kirbyvisp/vdjview" .
 
 <https://bio.tools/vdjviz> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0804,
@@ -486011,7 +518138,7 @@ Simulate and visualize predictions of bacterial killing based on the kinetics of
     biotools:primaryContact "Mikhail Shugay" .
 
 <https://bio.tools/vdptools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0625,
         edam:topic_0780,
@@ -486029,7 +518156,7 @@ Simulate and visualize predictions of bacterial killing based on the kinetics of
     sc:url "https://github.com/caurwx1/VDPtools" .
 
 <https://bio.tools/vecscreen_plus_taxonomy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0637,
         edam:topic_3077,
@@ -486045,7 +518172,7 @@ Simulate and visualize predictions of bacterial killing based on the kinetics of
     biotools:primaryContact "Alejandro A Schäffer" .
 
 <https://bio.tools/vect> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3307,
@@ -486062,7 +518189,7 @@ Simulate and visualize predictions of bacterial killing based on the kinetics of
     sc:url "http://www.complex.iastate.edu/download/Vect/" .
 
 <https://bio.tools/vector> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0659,
@@ -486088,14 +518215,13 @@ Simulate and visualize predictions of bacterial killing based on the kinetics of
 
 <https://bio.tools/vectorbase> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2759" ;
-            sc:name "Gene ID (VectorBase)" ;
-            sc:sameAs "http://edamontology.org/data_2759" ] ;
+            sc:additionalType "http://edamontology.org/data_2759" ;
+            sc:name "Gene ID (VectorBase)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2749" ;
-            sc:name "Genome identifier" ;
-            sc:sameAs "http://edamontology.org/data_2749" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2749" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Genome identifier" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0114,
@@ -486116,7 +518242,7 @@ Simulate and visualize predictions of bacterial killing based on the kinetics of
         "VectorBase contact email" .
 
 <https://bio.tools/vectorfriends> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0622,
@@ -486134,7 +518260,7 @@ Simulate and visualize predictions of bacterial killing based on the kinetics of
     sc:url "http://www.vectorfriends.com" .
 
 <https://bio.tools/vectorinfo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0602,
         edam:topic_0634,
@@ -486148,8 +518274,30 @@ VectorInfo is a freely accessible web resource, emphasised on medically importan
     sc:name "VectorInfo" ;
     sc:url "http://vectorinfo.icmr.org.in/" .
 
+<https://bio.tools/vectormap-gr> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0089,
+        edam:topic_0610,
+        edam:topic_3305,
+        edam:topic_3500,
+        edam:topic_3810 ;
+    sc:citation <https://doi.org/10.1016/J.CRPVBD.2021.100053>,
+        "pmcid:PMC8906066",
+        "pubmed:35284881" ;
+    sc:description "A local scale operational management tool for entomological monitoring, to support vector control activities in Greece and the Mediterranean Basin." ;
+    sc:featureList edam:operation_0224,
+        edam:operation_2428,
+        edam:operation_3454 ;
+    sc:isAccessibleForFree true ;
+    sc:name "VectorMap-GR" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://vectormap.si.edu/" .
+
 <https://bio.tools/vectornti> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0196,
@@ -486170,18 +518318,15 @@ VectorInfo is a freely accessible web resource, emphasised on medically importan
 
 <https://bio.tools/vectorstrip> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0850" ;
-            sc:name "Sequence set" ;
-            sc:sameAs "http://edamontology.org/data_0850" ],
+            sc:additionalType "http://edamontology.org/data_2887" ;
+            sc:name "Nucleic acid sequence record" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2887" ;
-            sc:name "Nucleic acid sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2887" ] ;
+            sc:additionalType "http://edamontology.org/data_0850" ;
+            sc:name "Sequence set" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2887" ;
-            sc:name "Nucleic acid sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2887" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2887" ;
+            sc:name "Nucleic acid sequence record" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -486212,7 +518357,7 @@ VectorInfo is a freely accessible web resource, emphasised on medically importan
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/vectorstrip.html" .
 
 <https://bio.tools/vecuum> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_3512 ;
@@ -486229,10 +518374,10 @@ VectorInfo is a freely accessible web resource, emphasised on medically importan
 
 <https://bio.tools/vega> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3117" ;
-            sc:name "Microarray hybridisation data" ;
-            sc:sameAs "http://edamontology.org/data_3117" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3117" ;
+            sc:encodingFormat "http://edamontology.org/format_2056" ;
+            sc:name "Microarray hybridisation data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2533,
@@ -486253,7 +518398,7 @@ VectorInfo is a freely accessible web resource, emphasised on medically importan
     biotools:primaryContact "Sandro Morganella" .
 
 <https://bio.tools/vega-hub> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_2269,
         edam:topic_3343 ;
@@ -486275,7 +518420,7 @@ Necessary (2) Preferences (0) Statistics (4) Marketing (0) Unclassified (0)."""
     sc:url "https://www.vegahub.eu" .
 
 <https://bio.tools/vega-zz> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0209,
         edam:topic_2258,
@@ -486289,7 +518434,7 @@ Necessary (2) Preferences (0) Statistics (4) Marketing (0) Unclassified (0)."""
     sc:url "http://www.vegazz.net" .
 
 <https://bio.tools/vega_annotation_browser> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0219,
         edam:topic_0621,
@@ -486311,10 +518456,10 @@ Necessary (2) Preferences (0) Statistics (4) Marketing (0) Unclassified (0)."""
 
 <https://bio.tools/vegamc> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3117" ;
-            sc:name "Microarray hybridisation data" ;
-            sc:sameAs "http://edamontology.org/data_3117" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3117" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Microarray hybridisation data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2533,
@@ -486335,7 +518480,7 @@ Necessary (2) Preferences (0) Statistics (4) Marketing (0) Unclassified (0)."""
     biotools:primaryContact "Sandro Morganella" .
 
 <https://bio.tools/veganbagel> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_0769,
         edam:topic_3304,
@@ -486355,7 +518500,7 @@ The veganbagel script takes a directory with DICOM files of a non-enhanced 3D T1
     sc:url "https://github.com/BrainImAccs/veganbagel" .
 
 <https://bio.tools/vegas2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0623,
@@ -486373,8 +518518,28 @@ The veganbagel script takes a directory with DICOM files of a non-enhanced 3D T1
     biotools:primaryContact "A. Mishra",
         "S. MacGregor" .
 
+<https://bio.tools/vegscape> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_3382,
+        edam:topic_3810 ;
+    sc:citation <https://doi.org/10.1038/S41597-022-01565-2>,
+        "pmcid:PMC9352751",
+        "pubmed:35927555" ;
+    sc:description "Near-real-time MODIS-derived vegetation index data products and online services for CONUS based on NASA LANCE." ;
+    sc:featureList edam:operation_3431,
+        edam:operation_3435,
+        edam:operation_3799 ;
+    sc:isAccessibleForFree true ;
+    sc:name "VegScape" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://nassgeodata.gmu.edu/VegScape/" .
+
 <https://bio.tools/velo-predictor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0203,
@@ -486398,7 +518563,7 @@ The veganbagel script takes a directory with DICOM files of a non-enhanced 3D T1
     sc:url "https://github.com/clay001/Velo-Predictor" .
 
 <https://bio.tools/velosim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2229,
@@ -486417,7 +518582,7 @@ VeloSim is a simulation package that generates single-cell RNA Sequencing data f
     sc:url "https://github.com/PeterZZQ/VeloSim" .
 
 <https://bio.tools/veloviz> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0099,
@@ -486433,30 +518598,25 @@ VeloSim is a simulation package that generates single-cell RNA Sequencing data f
 
 <https://bio.tools/velvet> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ],
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_2573" ;
+            sc:name "Sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ],
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:name "Sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2337" ;
-            sc:name "Resource metadata" ;
-            sc:sameAs "http://edamontology.org/data_2337" ] ;
+            sc:additionalType "http://edamontology.org/data_2337" ;
+            sc:name "Resource metadata" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2337" ;
-            sc:name "Resource metadata" ;
-            sc:sameAs "http://edamontology.org/data_2337" ],
+            sc:additionalType "http://edamontology.org/data_0925" ;
+            sc:name "Sequence assembly" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ],
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:name "Sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0925" ;
-            sc:name "Sequence assembly" ;
-            sc:sameAs "http://edamontology.org/data_0925" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2337" ;
+            sc:name "Resource metadata" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196 ;
     sc:citation <https://doi.org/10.1101/gr.074492.107>,
@@ -486473,7 +518633,7 @@ VeloSim is a simulation package that generates single-cell RNA Sequencing data f
     biotools:primaryContact "Daniel Zerbino" .
 
 <https://bio.tools/velvetk> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0196,
@@ -486489,10 +518649,10 @@ VeloSim is a simulation package that generates single-cell RNA Sequencing data f
 
 <https://bio.tools/velvetoptimiser> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3494" ;
-            sc:name "DNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3494" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "DNA sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0622 ;
@@ -486515,7 +518675,7 @@ VeloSim is a simulation package that generates single-cell RNA Sequencing data f
         "Torsten Seemann" .
 
 <https://bio.tools/vembrane> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "vembrane allows to simultaneously filter variants based on any INFO field, CHROM, POS, REF, ALT, QUAL, and the annotation field ANN. When filtering based on ANN, annotation entries are filtered first. If no annotation entry remains, the entire variant is deleted." ;
     sc:featureList edam:operation_3675 ;
     sc:name "vembrane" ;
@@ -486523,7 +518683,7 @@ VeloSim is a simulation package that generates single-cell RNA Sequencing data f
     sc:url "https://github.com/vembrane/vembrane" .
 
 <https://bio.tools/vems> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -486534,7 +518694,7 @@ VeloSim is a simulation package that generates single-cell RNA Sequencing data f
     sc:url "http://portugene.com/vems.html" .
 
 <https://bio.tools/venanciogroup> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0625,
         edam:topic_3170,
@@ -486552,8 +518712,36 @@ A collection of 1298 publicly available soybean RNAseq samples.
     sc:name "venanciogroup" ;
     sc:url "http://venanciogroup.uenf.br/resources/" .
 
+<https://bio.tools/venas> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1027" ;
+            sc:name "Gene ID (NCBI)" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1033" ;
+            sc:name "Ensembl gene ID" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0749,
+        edam:topic_3170,
+        edam:topic_3308,
+        edam:topic_3320,
+        edam:topic_3517 ;
+    sc:citation <https://doi.org/10.1186/S12864-022-08537-1>,
+        "pmcid:PMC9082955",
+        "pubmed:35534820" ;
+    sc:description "Genome-wide identification of associations between enhancer and alternative splicing in human and mouse." ;
+    sc:featureList edam:operation_0264,
+        edam:operation_0446,
+        edam:operation_3800 ;
+    sc:isAccessibleForFree true ;
+    sc:name "VEnAS" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://venas.iis.sinica.edu.tw/" .
+
 <https://bio.tools/venn_diagrams> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3366 ;
     sc:description "With this tool you can calculate the intersection(s) of list of elements. It will generate a textual output indicating which elements are in each intersection or are unique to a certain list. If the number of lists is lower than 6 it will also produce a graphical output in the form of a venn diagram. You have the choice between symmetric (default) or non symmetric venn diagrams. Currently you are able to calculate the intersections of at maximum 30 lists." ;
@@ -486569,7 +518757,7 @@ A collection of 1298 publicly available soybean RNAseq samples.
     biotools:primaryContact "Lieven Sterck" .
 
 <https://bio.tools/vennpainter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0797,
         edam:topic_3053 ;
@@ -486587,8 +518775,30 @@ A collection of 1298 publicly available soybean RNAseq samples.
     sc:url "https://github.com/linguoliang/VennPainter/" ;
     biotools:primaryContact "Wei Zhou" .
 
+<https://bio.tools/venomflow> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0121,
+        edam:topic_0154,
+        edam:topic_0769,
+        edam:topic_3170,
+        edam:topic_3308 ;
+    sc:citation <https://doi.org/10.1007/978-1-0716-2313-8_6>,
+        "pubmed:35727542" ;
+    sc:description "An Automated Bioinformatic Pipeline for Identification of Disulfide-Rich Peptides from Venom Arsenals." ;
+    sc:featureList edam:operation_0418,
+        edam:operation_3192,
+        edam:operation_3631 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "VenomFlow" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://venomflow.github.io/Venom_Flow/" .
+
 <https://bio.tools/venoms> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0637,
         edam:topic_3068,
@@ -486607,7 +518817,7 @@ venoMS is a free database for low molecular mass compounds found in spider venom
     sc:url "http://www.venoms.ch" .
 
 <https://bio.tools/venomzone> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0121 ;
     sc:description "VenomZone is a free web resource that provides information on venoms from six animal taxa (snakes, scorpions, spiders, cone snails, sea anemones and insects), as well as on their targets. Information can be browsed through pages on taxonomy, activity and venom protein families and all these pages link to related venom/toxin protein information from the manually curated UniProtKB/Swiss-Prot database." ;
@@ -486621,7 +518831,7 @@ venoMS is a free database for low molecular mass compounds found in spider venom
     biotools:primaryContact "ExPASy helpdesk" .
 
 <https://bio.tools/ventiliser> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3305,
         edam:topic_3418,
@@ -486639,8 +518849,31 @@ Ventiliser is a tool for segmenting pressure and flow waveforms from ventilators
     sc:name "Ventiliser" ;
     sc:url "https://github.com/barrinalo/Ventiliser" .
 
+<https://bio.tools/venus> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0130,
+        edam:topic_0154,
+        edam:topic_0199,
+        edam:topic_0601,
+        edam:topic_0736 ;
+    sc:citation <https://doi.org/10.1016/J.JMB.2022.167567>,
+        "pubmed:35662467" ;
+    sc:description "Elucidating the Impact of Amino Acid Variants on Protein Function Beyond Structure Destabilisation." ;
+    sc:featureList edam:operation_0321,
+        edam:operation_0331,
+        edam:operation_0417,
+        edam:operation_3096 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "Venus" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://venus.cmd.ox.ac.uk" .
+
 <https://bio.tools/vep> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Script",
         "Web application",
@@ -486664,7 +518897,7 @@ Ventiliser is a tool for segmenting pressure and flow waveforms from ventilators
     biotools:primaryContact "Contact Form" .
 
 <https://bio.tools/vepad> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0634,
         edam:topic_3360,
@@ -486681,7 +518914,7 @@ VEPAD is a tool for scoring the effect of Single Nucleotide Variants with respec
     sc:url "http://web.iitm.ac.in/bioinfo2/vepad/" .
 
 <https://bio.tools/veqtl-mapper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0199,
@@ -486696,7 +518929,7 @@ VEPAD is a tool for scoring the effect of Single Nucleotide Variants with respec
     biotools:primaryContact "Andrew Brown" .
 
 <https://bio.tools/vera_sam> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_2269,
@@ -486713,7 +518946,7 @@ VEPAD is a tool for scoring the effect of Single Nucleotide Variants with respec
     sc:url "http://db.systemsbiology.net/software/VERAandSAM/" .
 
 <https://bio.tools/verdedb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_3314 ;
     sc:citation <https://doi.org/10.26434/CHEMRXIV.9767978.V1> ;
@@ -486721,37 +518954,19 @@ VEPAD is a tool for scoring the effect of Single Nucleotide Variants with respec
     sc:name "verdedb" ;
     sc:url "http://www.verdedb.org" .
 
-<https://bio.tools/verificacion_los_pacientes_con_cumplimiento> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0634,
-        edam:topic_2640,
-        edam:topic_3421 ;
-    sc:citation <https://doi.org/10.1097/DCR.0000000000001511>,
-        "pubmed:31804269" ;
-    sc:description """Compliance With Preoperative Elements of the American Society of Colon and Rectal Surgeons Rectal Cancer Surgery Checklist Improves Pathologic and Postoperative Outcomes.
-
-BACKGROUND:In 2016, the American Society of Colon and Rectal Surgeons published a rectal cancer surgery checklist composed of the essential elements of preoperative, intraoperative, and postoperative care for patients undergoing rectal cancer surgery. OBJECTIVE:The purpose of this study was to assess whether compliance with preoperative checklist elements was associated with improved pathologic and 30-day postoperative outcomes after rectal cancer surgery. DESIGN:This was a retrospective cohort study.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'cumplimiento de seis elementos preoperatorios', 'lista de verificacion de cirugia', 'B80', 'la lista de verificacion'""" ;
-    sc:featureList edam:operation_3659 ;
-    sc:name "verificacion los pacientes con cumplimiento" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31804269" .
-
 <https://bio.tools/verifybamid> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3498" ;
-            sc:name "Sequence variations" ;
-            sc:sameAs "http://edamontology.org/data_3498" ],
+            sc:additionalType "http://edamontology.org/data_3498" ;
+            sc:encodingFormat "http://edamontology.org/format_3016" ;
+            sc:name "Sequence variations" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1383" ;
-            sc:name "Sequence alignment (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1383" ] ;
+            sc:additionalType "http://edamontology.org/data_1383" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "Sequence alignment (nucleic acid)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_3572 ;
@@ -486772,7 +518987,7 @@ BACKGROUND:In 2016, the American Society of Colon and Rectal Surgeons published
         "verifyBamID Google Group" .
 
 <https://bio.tools/vermont> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0602,
@@ -486790,8 +519005,28 @@ BACKGROUND:In 2016, the American Society of Colon and Rectal Surgeons published
     sc:url "http://bioinfo.dcc.ufmg.br/vermont/" ;
     biotools:primaryContact "Alexandre V. Fassio" .
 
+<https://bio.tools/vernal> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0099,
+        edam:topic_0160,
+        edam:topic_0166 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAB768>,
+        "pubmed:34791045" ;
+    sc:description "A Tool for Mining Fuzzy Network Motifs in RNA." ;
+    sc:featureList edam:operation_0239,
+        edam:operation_0245,
+        edam:operation_3927 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "Vernal" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://vernal.cs.mcgill.ca" .
+
 <https://bio.tools/versavis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_3382,
         edam:topic_3520 ;
@@ -486805,7 +519040,7 @@ BACKGROUND:In 2016, the American Society of Colon and Rectal Surgeons published
     sc:url "http://www.github.com/ethz-asl/versavis" .
 
 <https://bio.tools/vert_71> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0621,
         edam:topic_0659,
@@ -486821,7 +519056,7 @@ BACKGROUND:In 2016, the American Society of Colon and Rectal Surgeons published
     sc:url "http://www.targetscan.org/vert_71/" .
 
 <https://bio.tools/veselect> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3334,
         edam:topic_3382 ;
@@ -486837,7 +519072,7 @@ BACKGROUND:In 2016, the American Society of Colon and Rectal Surgeons published
         "Thomas Dandekar" .
 
 <https://bio.tools/vesicle_viewer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0153,
         edam:topic_3448 ;
@@ -486855,7 +519090,7 @@ BACKGROUND:In 2016, the American Society of Colon and Rectal Surgeons published
     sc:url "https://vesicleviewer.dmarquardt.ca/" .
 
 <https://bio.tools/vesiclepedia> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0219,
@@ -486872,7 +519107,7 @@ BACKGROUND:In 2016, the American Society of Colon and Rectal Surgeons published
     biotools:primaryContact "Hadi Valadi" .
 
 <https://bio.tools/vespa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0622,
@@ -486890,7 +519125,7 @@ BACKGROUND:In 2016, the American Society of Colon and Rectal Surgeons published
     biotools:primaryContact "Elena Peterson" .
 
 <https://bio.tools/vespa-evolution> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0621,
         edam:topic_0623,
@@ -486914,7 +519149,7 @@ We have written a manual that will take you through the process step by step. Th
     sc:url "http://www.mol-evol.org/VESPA" .
 
 <https://bio.tools/vespucci> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0085,
         edam:topic_0780,
@@ -486935,7 +519170,7 @@ We have written a manual that will take you through the process step by step. Th
     sc:url "http://vespucci.colombos.fmach.it/" .
 
 <https://bio.tools/vessap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_0769,
         edam:topic_3382,
@@ -486952,7 +519187,7 @@ We have written a manual that will take you through the process step by step. Th
     sc:url "http://DISCOtechnologies.org/VesSAP" .
 
 <https://bio.tools/vessel-branch-segmentation> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3318,
@@ -486970,8 +519205,31 @@ We have written a manual that will take you through the process step by step. Th
     sc:url "https://www.mathworks.com/matlabcentral/fileexchange/36031-vessel-branch-segmentation" ;
     biotools:primaryContact "Hiroshi Kawaguchi" .
 
+<https://bio.tools/vesselvio> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Desktop application" ;
+    sc:applicationSubCategory edam:topic_0625,
+        edam:topic_0769,
+        edam:topic_3063,
+        edam:topic_3382 ;
+    sc:citation <https://doi.org/10.1016/J.CRMETH.2022.100189>,
+        "pmcid:PMC9046271",
+        "pubmed:35497491" ;
+    sc:description "Open-source analysis and visualization of segmented vasculature datasets with VesselVio." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3553,
+        edam:operation_3799,
+        edam:operation_3891 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "VesselVio" ;
+    sc:operatingSystem "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://jacobbumgarner.github.io/VesselVio/Build.html> ;
+    sc:url "https://jacobbumgarner.github.io/VesselVio/" .
+
 <https://bio.tools/vessmorphovis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3304,
@@ -486995,7 +519253,7 @@ Sketching and building three-dimensional representations of the vascular morphol
     sc:url "https://github.com/BlueBrain/VessMorphoVis" .
 
 <https://bio.tools/vetra> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_2229,
@@ -487013,7 +519271,7 @@ Sketching and building three-dimensional representations of the vascular morphol
         "Kyoung Jae Won" .
 
 <https://bio.tools/vetscan-imagyst> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3302,
         edam:topic_3382,
@@ -487029,7 +519287,7 @@ Fecal examination is an important component of routine companion animal wellness
     sc:url "https://www.vetscanimagyst.com/" .
 
 <https://bio.tools/vexor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0102,
@@ -487046,7 +519304,7 @@ Fecal examination is an important component of routine companion animal wellness
     biotools:primaryContact "Arnaud Droit" .
 
 <https://bio.tools/vfdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0621,
@@ -487067,7 +519325,7 @@ Fecal examination is an important component of routine companion animal wellness
     biotools:primaryContact "Jian Yang" .
 
 <https://bio.tools/vffva> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2259,
         edam:topic_3316,
@@ -487082,8 +519340,58 @@ Fecal examination is an important component of routine companion animal wellness
     sc:name "VFFVA" ;
     sc:url "https://github.com/marouenbg/VFFVA" .
 
+<https://bio.tools/vfold-pipeline> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_3495" ;
+            sc:name "RNA sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0082,
+        edam:topic_0097,
+        edam:topic_0099,
+        edam:topic_0166,
+        edam:topic_0769 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC426>,
+        "pubmed:35758624" ;
+    sc:description "A web server for RNA 3D structure prediction from sequences." ;
+    sc:featureList edam:operation_0278,
+        edam:operation_0279,
+        edam:operation_0474,
+        edam:operation_2441,
+        edam:operation_4009 ;
+    sc:isAccessibleForFree true ;
+    sc:name "Vfold-Pipeline" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://rna.physics.missouri.edu/vfoldPipeline/index.html.<h4" .
+
+<https://bio.tools/vfoldmcpx> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_3495" ;
+            sc:name "RNA sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0082,
+        edam:topic_0097,
+        edam:topic_0099,
+        edam:topic_3318 ;
+    sc:citation <https://doi.org/10.1261/RNA.079020.121>,
+        "pmcid:PMC8925972",
+        "pubmed:35058350" ;
+    sc:description "Predicting 2D structures of Multi-strand RNA complexes" ;
+    sc:featureList edam:operation_0278,
+        edam:operation_0303,
+        edam:operation_2441 ;
+    sc:isAccessibleForFree true ;
+    sc:name "VfoldMCPX" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://rna.physics.missouri.edu/vfoldMCPX2" .
+
 <https://bio.tools/vfuzz> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:citation <https://doi.org/10.1109/TCYB.2020.3013675>,
         "pubmed:32946405" ;
     sc:description """Vulnerability Prediction-Assisted Evolutionary Fuzzing for Binary Programs.
@@ -487093,7 +519401,7 @@ Fuzzing is a technique of finding bugs by executing a target program recurrently
     sc:url "https://github.com/guidovranken/vfuzz" .
 
 <https://bio.tools/vg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "variation graph data structures, interchange formats, alignment, genotyping, and variant calling methods" ;
     sc:featureList edam:operation_3209 ;
     sc:name "vg" ;
@@ -487101,7 +519409,7 @@ Fuzzing is a technique of finding bugs by executing a target program recurrently
     sc:url "https://github.com/vgteam/vg" .
 
 <https://bio.tools/vg-pedigree> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0622,
@@ -487118,7 +519426,7 @@ Fuzzing is a technique of finding bugs by executing a target program recurrently
     sc:url "https://github.com/vgteam/vg_wdl" .
 
 <https://bio.tools/vga> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0622,
@@ -487134,7 +519442,7 @@ Fuzzing is a technique of finding bugs by executing a target program recurrently
     sc:url "http://genetics.cs.ucla.edu/vga/" .
 
 <https://bio.tools/vgaelda> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_0659,
@@ -487151,7 +519459,7 @@ Fuzzing is a technique of finding bugs by executing a target program recurrently
     biotools:primaryContact "Han Zhang" .
 
 <https://bio.tools/vgea> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0196,
@@ -487175,7 +519483,7 @@ Fuzzing is a technique of finding bugs by executing a target program recurrently
     sc:url "https://github.com/pauloluniyi/VGEA" .
 
 <https://bio.tools/vggfold> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0108,
@@ -487196,7 +519504,7 @@ As an essential task in protein structure and function prediction, protein fold
     sc:url "http://csbio.njust.edu.cn/bioinf/vggfold/" .
 
 <https://bio.tools/vgichan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0081,
@@ -487210,10 +519518,10 @@ As an essential task in protein structure and function prediction, protein fold
         "Mac",
         "Windows" ;
     sc:softwareHelp <http://crdd.osdd.net/raghava/vgichan/help.html> ;
-    sc:url "http://www.imtech.res.in/raghava/vgichan/" .
+    sc:url "http://webs.iiitd.edu.in/raghava/vgichan/" .
 
 <https://bio.tools/vgo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654 ;
@@ -487232,7 +519540,7 @@ As an essential task in protein structure and function prediction, protein fold
     sc:url "http://athena.bioc.uvic.ca/virology-ca-tools/vgo/" .
 
 <https://bio.tools/vgsim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_3305,
@@ -487251,7 +519559,7 @@ As an essential task in protein structure and function prediction, protein fold
     biotools:primaryContact "Vladimir Shchur" .
 
 <https://bio.tools/vhcub> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0654,
         edam:topic_2269 ;
@@ -487274,14 +519582,14 @@ Furthermore, vhcub uses ggplot to visualize two important plots named ENc-GC3 pl
 
 <https://bio.tools/vhldb> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2538" ;
-            sc:name "Mutation identifier" ;
-            sc:sameAs "http://edamontology.org/data_2538" ] ;
+            sc:additionalType "http://edamontology.org/data_2538" ;
+            sc:encodingFormat "http://edamontology.org/format_2206" ;
+            sc:name "Mutation identifier" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0896" ;
-            sc:name "Protein report" ;
-            sc:sameAs "http://edamontology.org/data_0896" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0896" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Protein report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web API",
         "Web application" ;
@@ -487306,7 +519614,7 @@ Furthermore, vhcub uses ggplot to visualize two important plots named ENc-GC3 pl
     biotools:primaryContact "Silvio C.E. Tosatto" .
 
 <https://bio.tools/vhulk> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0623,
         edam:topic_3174,
@@ -487321,7 +519629,7 @@ Furthermore, vhcub uses ggplot to visualize two important plots named ENc-GC3 pl
     sc:url "https://github.com/LaboratorioBioinformatica/vHULK" .
 
 <https://bio.tools/viadbg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0199,
         edam:topic_3168 ;
@@ -487337,7 +519645,7 @@ RNA viruses exhibit a high mutation rate and thus they exist in infected cells a
     sc:url "https://bitbucket.org/bfreirec1/viadbg" .
 
 <https://bio.tools/vias> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3382 ;
     sc:description "Volume Integration and Alignment System integrates tiled optical sections obtained from Laser Scanning Microscopy into a single volumetric dataset." ;
@@ -487350,7 +519658,7 @@ RNA viruses exhibit a high mutation rate and thus they exist in infected cells a
     sc:url "http://research.mssm.edu/cnic/tools-vias.html" .
 
 <https://bio.tools/vibiba> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3337,
@@ -487364,7 +519672,7 @@ RNA viruses exhibit a high mutation rate and thus they exist in infected cells a
     biotools:primaryContact "Hans Neubauer" .
 
 <https://bio.tools/vica> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0781,
         edam:topic_3174 ;
@@ -487382,7 +519690,7 @@ RNA viruses exhibit a high mutation rate and thus they exist in infected cells a
     biotools:primaryContact "Adam Rivers" .
 
 <https://bio.tools/vicmpred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0623,
@@ -487396,10 +519704,10 @@ RNA viruses exhibit a high mutation rate and thus they exist in infected cells a
         "Mac",
         "Windows" ;
     sc:softwareHelp <http://crdd.osdd.net/raghava/vicmpred/help.html> ;
-    sc:url "http://www.imtech.res.in/raghava/vicmpred/" .
+    sc:url "http://webs.iiitd.edu.in/raghava/vicmpred/" .
 
 <https://bio.tools/victor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0081 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btu773> ;
@@ -487417,7 +519725,7 @@ RNA viruses exhibit a high mutation rate and thus they exist in infected cells a
     biotools:primaryContact "Silvio C.E. Tosatto" .
 
 <https://bio.tools/victor-virus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0622,
@@ -487434,7 +519742,7 @@ RNA viruses exhibit a high mutation rate and thus they exist in infected cells a
     biotools:primaryContact "Jan Meier-Kolthoff" .
 
 <https://bio.tools/victree> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0219,
         edam:topic_0637,
@@ -487450,7 +519758,7 @@ RNA viruses exhibit a high mutation rate and thus they exist in infected cells a
     biotools:primaryContact "Sejal Modha" .
 
 <https://bio.tools/vicuna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0199,
@@ -487468,7 +519776,7 @@ RNA viruses exhibit a high mutation rate and thus they exist in infected cells a
     biotools:primaryContact "Contact Form" .
 
 <https://bio.tools/vida> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0781 ;
     sc:citation <https://doi.org/10.1093/nar/29.1.133>,
@@ -487485,7 +519793,7 @@ RNA viruses exhibit a high mutation rate and thus they exist in infected cells a
     sc:url "http://www.biochem.ucl.ac.uk/bsm/virus_database/VIDA3/VIDA.html" .
 
 <https://bio.tools/vidger> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3170 ;
@@ -487504,7 +519812,7 @@ RNA viruses exhibit a high mutation rate and thus they exist in infected cells a
     biotools:primaryContact "Brandon Monier" .
 
 <https://bio.tools/vidjil> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0804 ;
@@ -487522,7 +519830,7 @@ RNA viruses exhibit a high mutation rate and thus they exist in infected cells a
     biotools:primaryContact "Support" .
 
 <https://bio.tools/vienna-livertox-workspace> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2840,
         edam:topic_3047,
@@ -487539,7 +519847,7 @@ RNA viruses exhibit a high mutation rate and thus they exist in infected cells a
     sc:url "https://livertox.univie.ac.at" .
 
 <https://bio.tools/vienna-ptm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0154,
@@ -487562,7 +519870,7 @@ RNA viruses exhibit a high mutation rate and thus they exist in infected cells a
     biotools:primaryContact "Contact form" .
 
 <https://bio.tools/vienna_rna_package> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0097,
@@ -487584,7 +519892,7 @@ RNA viruses exhibit a high mutation rate and thus they exist in infected cells a
     biotools:primaryContact "Vienna RNA Package Support" .
 
 <https://bio.tools/vienna_rna_websuite> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0097,
@@ -487606,7 +519914,7 @@ RNA viruses exhibit a high mutation rate and thus they exist in infected cells a
     biotools:primaryContact "Judith Ivansits" .
 
 <https://bio.tools/viennarna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0097,
         edam:topic_0099 ;
@@ -487628,7 +519936,7 @@ RNA viruses exhibit a high mutation rate and thus they exist in infected cells a
         "Ronny Lorenz" .
 
 <https://bio.tools/viennngs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3169,
@@ -487651,7 +519959,7 @@ RNA viruses exhibit a high mutation rate and thus they exist in infected cells a
         "Fabian Amman" .
 
 <https://bio.tools/viewbs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_3168,
@@ -487668,7 +519976,7 @@ RNA viruses exhibit a high mutation rate and thus they exist in infected cells a
     biotools:primaryContact "Shaojun Xie" .
 
 <https://bio.tools/viewit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3382,
         edam:topic_3444 ;
@@ -487683,7 +519991,7 @@ RNA viruses exhibit a high mutation rate and thus they exist in infected cells a
     sc:url "http://itg.beckman.illinois.edu/technology_development/software_development/viewit/" .
 
 <https://bio.tools/vigor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0114,
         edam:topic_0203,
@@ -487701,20 +520009,30 @@ RNA viruses exhibit a high mutation rate and thus they exist in infected cells a
     sc:url "http://www.jcvi.org/vigor" ;
     biotools:primaryContact "Support" .
 
-<https://bio.tools/vimeo> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3303,
-        edam:topic_3382,
-        edam:topic_3395 ;
-    sc:citation <https://doi.org/10.3389/FBIOE.2019.00184>,
-        "pmcid:PMC6684753",
-        "pubmed:31417899" ;
-    sc:description "> VERY_LOW CONFIDENCE! | > CORRECT NAME OF TOOL COULD ALSO BE 'bioprinting', 'Ultra-Low-Cost 3D Bioprinting', 'bioprinter' | Modification and Application of an Off-the-Shelf Desktop 3D-Printer for Biofabrication | This is \"low-cost bioprinter\" by Daniel Gilbert on Vimeo, the home for high quality videos and the people who love them | This is \"syringe carrier\" by Daniel Gilbert on Vimeo, the home for high quality videos and the people who love them | This is \"Line Video\" by Daniel Gilbert on Vimeo, the home for high quality videos and the people who love them | This is \"FAU Video\" by Daniel Gilbert on Vimeo, the home for high quality videos and the people who love them | Vimeo and its partners use cookies to personalize your experience, serve relevant ads, and understand how people are using our services. To learn more or change your preferences, visit our Cookie Policy" ;
-    sc:featureList edam:operation_3216 ;
-    sc:name "vimeo" ;
-    sc:url "https://vimeo.com/274482794" .
+<https://bio.tools/vigor_r> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_2269,
+        edam:topic_2885,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC328>,
+        "pmcid:PMC9191213",
+        "pubmed:35575313" ;
+    sc:description "An R package VIGoR for joint estimation of multiple linear learners with variational Bayesian inference." ;
+    sc:featureList edam:operation_3196,
+        edam:operation_3659,
+        edam:operation_3936 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "VIGoR" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://cran.r-project.org/web/packages/VIGoR/VIGoR.pdf> ;
+    sc:url "https://github.com/Onogi/VIGoR" .
 
 <https://bio.tools/vimic> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0622,
         edam:topic_0749,
@@ -487731,7 +520049,7 @@ RNA viruses exhibit a high mutation rate and thus they exist in infected cells a
     sc:url "http://bmtongji.cn/ViMIC/index.php" .
 
 <https://bio.tools/ving> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0102,
@@ -487751,7 +520069,7 @@ RNA viruses exhibit a high mutation rate and thus they exist in infected cells a
     biotools:primaryContact "Marc Descrimes" .
 
 <https://bio.tools/viola> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_2640,
@@ -487770,20 +520088,8 @@ RNA viruses exhibit a high mutation rate and thus they exist in infected cells a
     biotools:primaryContact <https://orcid.org/0000-0002-0038-728X>,
         <https://orcid.org/0000-0003-4392-090X> .
 
-<https://bio.tools/violence_youth_violence_bullying_perpetration> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3305,
-        edam:topic_3399,
-        edam:topic_3414 ;
-    sc:citation <https://doi.org/10.1001/JAMANETWORKOPEN.2019.11375>,
-        "pmcid:PMC6745057",
-        "pubmed:31517967" ;
-    sc:description "> VERY_LOW CONFIDENCE! | > HOMEPAGE MISSING! | > CORRECT NAME OF TOOL COULD ALSO BE 'sexual violence youth violence bullying', 'violence youth violence bullying', 'sexual violence youth violence', 'violence youth violence' | Co-occurrence of Violence-Related Risk and Protective Behaviors and Adult Support Among Male Youth in Urban Neighborhoods | Importance:Male youth in lower-resource neighborhoods bear a disproportionate burden of violence involvement, but little is known about clusters of specific violence-related behaviors to inform cross-cutting interventions that address multiple forms of violence. Objective:To examine associations between adult support and patterns of violence and risk or protective behavior co-occurrence among male youths in urban neighborhoods. Design, Setting, and Participants:Cross-sectional analysis of baseline and end-of-program data from a recently completed cluster-randomized sexual violence prevention trial across 20 lower-resource neighborhoods" ;
-    sc:featureList edam:operation_3659 ;
-    sc:name "violence youth violence bullying perpetration" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31517967" .
-
 <https://bio.tools/vip> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_2885 ;
@@ -487800,7 +520106,7 @@ RNA viruses exhibit a high mutation rate and thus they exist in infected cells a
     biotools:primaryContact "Yang Li" .
 
 <https://bio.tools/vip-hl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0634,
         edam:topic_3053,
@@ -487816,7 +520122,7 @@ The American College of Medical Genetics and Genomics, and the Association for M
     sc:url "http://hearing.genetics.bgi.com/" .
 
 <https://bio.tools/viper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0204,
@@ -487841,7 +520147,7 @@ The American College of Medical Genetics and Genomics, and the Association for M
     biotools:primaryContact "Mariano J Alvarez" .
 
 <https://bio.tools/viperdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0781 ;
     sc:citation <https://doi.org/10.1093/nar/gkn840>,
@@ -487859,8 +520165,30 @@ The American College of Medical Genetics and Genomics, and the Association for M
     sc:softwareHelp <http://viperdb.scripps.edu/help.php> ;
     sc:url "http://viperdb.scripps.edu/" .
 
+<https://bio.tools/vippid> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0199,
+        edam:topic_0634,
+        edam:topic_3474,
+        edam:topic_3577,
+        edam:topic_3930 ;
+    sc:citation <https://doi.org/10.1093/BIB/BBAC176>,
+        "pubmed:35598327" ;
+    sc:description "A gene-specific single nucleotide variant pathogenicity prediction tool for primary immunodeficiency diseases." ;
+    sc:featureList edam:operation_0331,
+        edam:operation_3461,
+        edam:operation_3920 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Apache-2.0" ;
+    sc:name "VIPPID" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://mylab.shinyapps.io/VIPPID/" .
+
 <https://bio.tools/vipr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application",
         "Workbench" ;
@@ -487885,26 +520213,26 @@ The American College of Medical Genetics and Genomics, and the Association for M
 
 <https://bio.tools/viqor> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ],
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Mass spectrometry data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1233" ;
-            sc:name "Sequence set (protein)" ;
-            sc:sameAs "http://edamontology.org/data_1233" ] ;
+            sc:additionalType "http://edamontology.org/data_1233" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Sequence set (protein)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ],
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3508" ;
+            sc:name "Plot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ],
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Mass spectrometry data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Expression data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -487937,12 +520265,12 @@ The American College of Medical Genetics and Genomics, and the Association for M
     sc:provider "Veit Schwämmle" ;
     sc:softwareHelp <https://bitbucket.org/vtsiamis/viqor/src/master/Manual.pdf> ;
     sc:softwareVersion "1.0" ;
-    sc:url "http://computproteomics.bmb.sdu.dk:8192/app_direct/VIQoR/" ;
+    sc:url "http://computproteomics.bmb.sdu.dk:443/app_direct/VIQoR/" ;
     biotools:primaryContact "Vasileios Tsiamis",
         "Veit Schwämmle" .
 
 <https://bio.tools/viquas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0654,
@@ -487955,8 +520283,29 @@ The American College of Medical Genetics and Genomics, and the Association for M
     sc:softwareHelp <https://sourceforge.net/projects/viquas/> ;
     sc:url "http://sourceforge.net/projects/viquas/" .
 
+<https://bio.tools/viquf> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Script" ;
+    sc:applicationSubCategory edam:topic_0196,
+        edam:topic_3168,
+        edam:topic_3299 ;
+    sc:citation <https://doi.org/10.1109/TCBB.2022.3190282>,
+        "pubmed:35853050" ;
+    sc:description "De Novo Viral Quasispecies Reconstruction Using Unitig-Based Flow Networks." ;
+    sc:featureList edam:operation_0487,
+        edam:operation_0524,
+        edam:operation_3799 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "ViQUF" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/borjaf696/ViQUF" .
+
 <https://bio.tools/viral_bioinformatics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0102,
@@ -487983,18 +520332,30 @@ The American College of Medical Genetics and Genomics, and the Association for M
     sc:url "http://athena.bioc.uvic.ca/" ;
     biotools:primaryContact "Viral Bioinformatics Resource Center" .
 
-<https://bio.tools/viral_genome_sequencing> a sc:SoftwareApplication ;
-    sc:description "Viral genome sequencing is a fast and efficient method for research on viral replication, packaging, function of terminase, transcription regulation, and metabolism of host cell. CD genomics platform holds great potential for viral genome sequencing. A comprehensive virus sequences will facilitate interpretation of viral metagenomics data by providing reference genomes, lead to a better understanding of virus diversity, ecology, adaptation and evolution, and enable the prediction of emerging infectious diseases caused by viruses.  CD genomics can deliver high quality sequencing data for your virus genome of interest. Contact us for assistance in configuring your project." ;
-    sc:name "Viral Genome Sequencing" ;
-    sc:url "https://www.cd-genomics.com/Viral-Genome-Sequencing.html" .
-
-<https://bio.tools/viral_metagenomic> a sc:SoftwareApplication ;
-    sc:description "Apart from the qualified viral metagenomic sequencing, we provide assistance, including the experimental design, the determination of the appropriate sequencing platform, software tools, and analysis methodologies, to accommodate your project. If you have additional requirements or questions, please do not hesitate to contact us, our experienced specialists would like to help you to solve your questions." ;
-    sc:name "Viral Metagenomic" ;
-    sc:url "https://www.cd-genomics.com/Viral-Metagenomic-Sequencing.html" .
+<https://bio.tools/viralfp> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0078,
+        edam:topic_0154,
+        edam:topic_0637,
+        edam:topic_3474,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.3389/FMEDT.2021.722392>,
+        "pmcid:PMC8757699",
+        "pubmed:35047951" ;
+    sc:description "A centralized datasource for all data relevant for the understanding of viral fusion peptides." ;
+    sc:featureList edam:operation_0416,
+        edam:operation_2575,
+        edam:operation_3935 ;
+    sc:isAccessibleForFree true ;
+    sc:name "ViralFP" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://viralfp.bio.di.uminho.pt/" .
 
 <https://bio.tools/viralfusionseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0114,
@@ -488014,7 +520375,7 @@ The American College of Medical Genetics and Genomics, and the Association for M
     biotools:primaryContact "Marco Li" .
 
 <https://bio.tools/virallink> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0154,
         edam:topic_0602,
@@ -488033,10 +520394,10 @@ ViralLink is a systems biology workflow which reconstructs and analyses networks
 
 <https://bio.tools/viralmbd> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3497" ;
-            sc:name "DNA sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_3497" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3497" ;
+            sc:encodingFormat "http://edamontology.org/format_2545" ;
+            sc:name "DNA sequence (raw)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.3389/fgene.2015.00016> ;
@@ -488052,7 +520413,7 @@ ViralLink is a systems biology workflow which reconstructs and analyses networks
     sc:url "http://www.biobix.be/viralmbd/" .
 
 <https://bio.tools/viralmir> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0099,
@@ -488069,7 +520430,7 @@ ViralLink is a systems biology workflow which reconstructs and analyses networks
     sc:url "http://csb.cse.yzu.edu.tw/viralmir/" .
 
 <https://bio.tools/viralmsa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0622,
@@ -488090,7 +520451,7 @@ Importantly, ViralMSA differs significantly from VIRULIGN, a codon-correct refer
     sc:url "https://github.com/niemasd/ViralMSA" .
 
 <https://bio.tools/viralorfeome> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0632,
@@ -488110,7 +520471,7 @@ Importantly, ViralMSA differs significantly from VIRULIGN, a codon-correct refer
         "P. O. Vidalain" .
 
 <https://bio.tools/viralphos> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078 ;
     sc:description "ViralPhos is a web server for identifying potential virus phosphorylation sites with substrate motifs." ;
@@ -488123,7 +520484,7 @@ Importantly, ViralMSA differs significantly from VIRULIGN, a codon-correct refer
     sc:url "http://csb.cse.yzu.edu.tw/ViralPhos/" .
 
 <https://bio.tools/viralpro> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0736,
@@ -488139,7 +520500,7 @@ Importantly, ViralMSA differs significantly from VIRULIGN, a codon-correct refer
     sc:url "http://scratch.proteomics.ics.uci.edu" .
 
 <https://bio.tools/viralrecall> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0621,
         edam:topic_3174,
@@ -488156,8 +520517,35 @@ ViralRecall is a flexible command-line tool for detecting signatures of giant vi
     sc:softwareVersion "2.0" ;
     sc:url "https://github.com/faylward/viralrecall" .
 
+<https://bio.tools/viralvacdb> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:description "ViraVacDB is a repository of human vaccines developed against viral diseases." ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "viralvacdb" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/viralvacdb/> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/viralvacdb/" .
+
+<https://bio.tools/viralverify> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Script" ;
+    sc:applicationSubCategory edam:topic_0622 ;
+    sc:description """viralVerify classifies contigs (output of metaviralSPAdes or other assemblers) as viral, non-viral or uncertain, based on gene content. Also for non-viral contigs it can optionally provide plasmid/non-plasmid classification.
+
+viralVerify predicts genes in the contig using Prodigal in the metagenomic mode, runs hmmsearch on the predicted proteins and classifies the contig as vrial or non-viral by applying the Naive Bayes classifier (NBC). For the set of predicted HMMs, viralVerify uses trained NBC to classify this set to be viral or chromosomal.""" ;
+    sc:name "viralverify" ;
+    sc:operatingSystem "Linux",
+        "Mac" ;
+    sc:softwareVersion "1.1" ;
+    sc:url "https://github.com/ablab/viralVerify" .
+
 <https://bio.tools/viralzone> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0121,
@@ -488176,7 +520564,7 @@ ViralRecall is a flexible command-line tool for detecting signatures of giant vi
     sc:url "http://viralzone.expasy.org" .
 
 <https://bio.tools/viramp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0781,
@@ -488194,22 +520582,20 @@ ViralRecall is a flexible command-line tool for detecting signatures of giant vi
 
 <https://bio.tools/virannot> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ],
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:name "Protein sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ],
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:name "Nucleic acid sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ] ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Nucleic acid sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0872" ;
-            sc:name "Phylogenetic tree" ;
-            sc:sameAs "http://edamontology.org/data_0872" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0872" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Phylogenetic tree" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0781,
         edam:topic_3174,
@@ -488230,7 +520616,7 @@ It is designed to identify viruses in plant metagenomic data but it can be used
     biotools:primaryContact <https://orcid.org/0000-0002-3093-5873> .
 
 <https://bio.tools/virapipe> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3168,
@@ -488249,7 +520635,7 @@ It is designed to identify viruses in plant metagenomic data but it can be used
     biotools:primaryContact "Altti Ilari Maarala" .
 
 <https://bio.tools/virclust> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0622,
@@ -488271,7 +520657,7 @@ It is designed to identify viruses in plant metagenomic data but it can be used
     sc:url "http://virclust.icbm.de" .
 
 <https://bio.tools/virdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0140,
         edam:topic_0154,
@@ -488293,8 +520679,32 @@ Vitiligo Information resource (<b>VIRdb</b>) is a comprehensive database which s
     sc:name "VIRdb" ;
     sc:url "http://www.vitiligoinfores.com/" .
 
+<https://bio.tools/viremashiny> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_3003" ;
+            sc:name "Sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0219,
+        edam:topic_3168,
+        edam:topic_3299 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC522>,
+        "pubmed:35904541" ;
+    sc:description "An Interactive Application for Analysis of Viral Recombination Data." ;
+    sc:featureList edam:operation_0451,
+        edam:operation_3431,
+        edam:operation_3695 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "ViReMaShiny" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://routhlab.shinyapps.io/ViReMaShiny/" .
+
 <https://bio.tools/vireport> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3293,
         edam:topic_3305 ;
@@ -488308,8 +520718,21 @@ This repository contains a report on SARS-CoV-2 generated by ViReport using data
     sc:name "ViReport" ;
     sc:url "https://github.com/mirandajsong/ViReport-SARS-CoV-2" .
 
+<https://bio.tools/virfacpred> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:description "VirFacPred is developed for predicting virulent proteins. It utilizes wide range of information and techniques for prediction that includes machine learning techniques, BLAST, and MERCI." ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "virfacpred" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/virfacpred/> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/virfacpred/" .
+
 <https://bio.tools/virgo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0203,
@@ -488328,7 +520751,7 @@ This repository contains a report on SARS-CoV-2 generated by ViReport using data
     sc:url "http://whipple.cs.vt.edu/virgoperl/welcome.cgi" .
 
 <https://bio.tools/virgo-catalogue> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3174,
         edam:topic_3420,
         edam:topic_3697,
@@ -488349,7 +520772,7 @@ Analysis of metagenomic and metatranscriptomic data is complicated and typically
     sc:url "http://virgo.igs.umaryland.edu" .
 
 <https://bio.tools/virhostnet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Bioinformatics portal",
         "Database portal",
         "Web service" ;
@@ -488379,7 +520802,7 @@ Analysis of metagenomic and metatranscriptomic data is complicated and typically
     biotools:primaryContact <https://orcid.org/0000-0001-9974-1877> .
 
 <https://bio.tools/virid> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3170,
         edam:topic_3174,
@@ -488397,7 +520820,7 @@ Analysis of metagenomic and metatranscriptomic data is complicated and typically
     sc:url "https://github.com/jnoms/virID" .
 
 <https://bio.tools/viridic> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0622,
         edam:topic_0769 ;
@@ -488411,8 +520834,34 @@ Comparative phage genome analysis tool.""" ;
     sc:name "VIRIDIC" ;
     sc:url "http://viridic.icbm.de" .
 
+<https://bio.tools/virmap> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1234" ;
+            sc:name "Sequence set (nucleic acid)" ] ;
+    bsc:output [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_3028" ;
+            sc:name "Taxonomy" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0781,
+        edam:topic_3174 ;
+    sc:citation <https://doi.org/10.1038/s41467-018-05658-8>,
+        "pmcid:PMC6086868",
+        "pubmed:30097567" ;
+    sc:description "VirMAP a tool that merge nucleotide and protein information to taxonomically classify viral reconstructions independent of genome coverage or read overlap" ;
+    sc:featureList edam:operation_0232,
+        edam:operation_3435,
+        edam:operation_3460 ;
+    sc:isAccessibleForFree true ;
+    sc:license "AGPL-3.0" ;
+    sc:name "VirMAP" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/cmmr/VirMAP" .
+
 <https://bio.tools/virmid> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_2885,
@@ -488429,8 +520878,58 @@ Comparative phage genome analysis tool.""" ;
     sc:softwareVersion "1.1.1" ;
     sc:url "http://sourceforge.net/p/virmid/wiki/Home/" .
 
+<https://bio.tools/virocapt> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0091,
+        edam:topic_0622,
+        edam:topic_0769,
+        edam:topic_0781,
+        edam:topic_2640 ;
+    sc:citation <https://doi.org/10.3233/SHTI220602>,
+        "pubmed:35612221" ;
+    sc:description "A Bioinformatics Pipeline for Identifying Viral Insertion in Human Host Genome." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_2422,
+        edam:operation_3196,
+        edam:operation_3218 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "viroCapt" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://shiny.maximewack.com/viroCapt_MIE" .
+
+<https://bio.tools/viroiddb> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0099,
+        edam:topic_0196,
+        edam:topic_0780,
+        edam:topic_2814,
+        edam:topic_3170 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAB974>,
+        "pmcid:PMC8728161",
+        "pubmed:34751403" ;
+    sc:description "ViroidDB is the most comprehensive collection of viroid, satellite RNA, retrozyme, and deltavirus genome sequences available on the internet." ;
+    sc:featureList edam:operation_0278,
+        edam:operation_0292,
+        edam:operation_0337,
+        edam:operation_0502,
+        edam:operation_2422 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "ViroidDB" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://viroids.org" .
+
 <https://bio.tools/viromescan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0781,
         edam:topic_3174,
@@ -488449,7 +520948,7 @@ Comparative phage genome analysis tool.""" ;
     biotools:primaryContact <http://orcid.org/0000-0002-5655-6695> .
 
 <https://bio.tools/virprenet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0199,
         edam:topic_3299,
@@ -488465,8 +520964,25 @@ Influenza viruses are persistently threatening public health, causing annual epi
     sc:name "VirPreNet" ;
     sc:url "https://github.com/Rayin-saber/VirPreNet" .
 
+<https://bio.tools/virsearcher> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_3174,
+        edam:topic_3474,
+        edam:topic_3837 ;
+    sc:citation <https://doi.org/10.1109/TCBB.2022.3161135>,
+        "pubmed:35316191" ;
+    sc:description "Identifying Bacteriophages from Metagenomes by Combining Convolutional Neural Network and Gene Information." ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "virSearcher" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://github.com/DrJackson18/virSearcher" .
+
 <https://bio.tools/virsirnadb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0219,
@@ -488487,7 +521003,7 @@ Influenza viruses are persistently threatening public health, causing annual epi
     biotools:primaryContact "Dr. Manoj Kumar" .
 
 <https://bio.tools/virstrain> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_3168,
         edam:topic_3174,
@@ -488504,7 +521020,7 @@ The output of VirStrain contains two files. The first is a report file in text f
     sc:url "https://github.com/liaoherui/VirStrain" .
 
 <https://bio.tools/virtual-acoustics> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_3318,
         edam:topic_3474 ;
@@ -488520,8 +521036,56 @@ The output of VirStrain contains two files. The first is a report file in text f
         <http://www.virtualacoustics.org/VA/support.html#faw> ;
     sc:url "http://www.virtualacoustics.org/" .
 
+<https://bio.tools/virtual_assay> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_3108" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Experimental measurement" ] ;
+    bsc:output [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Desktop application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:citation <https://doi.org/10.1016/j.jocs.2020.101202> ;
+    sc:description "Software to perform human in silico drug trials in populations of human cardiac cell models, based on ion channel information." ;
+    sc:featureList edam:operation_2426 ;
+    sc:isAccessibleForFree false ;
+    sc:license "Proprietary" ;
+    sc:name "Virtual Assay" ;
+    sc:operatingSystem "Windows" ;
+    sc:softwareHelp <https://www.cs.ox.ac.uk/ccs/virtual-assay/> ;
+    sc:softwareVersion "3.2" ;
+    sc:url "https://www.cs.ox.ac.uk/ccs/virtual-assay/" .
+
+<https://bio.tools/virtual_chip-seq> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0749,
+        edam:topic_3169,
+        edam:topic_3170,
+        edam:topic_3308,
+        edam:topic_3940 ;
+    sc:citation <https://doi.org/10.1186/S13059-022-02690-2>,
+        "pmcid:PMC9185870",
+        "pubmed:35681170" ;
+    sc:description "Predicting transcription factor binding by learning from the transcriptome." ;
+    sc:featureList edam:operation_0445,
+        edam:operation_2575,
+        edam:operation_3222,
+        edam:operation_3431 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "Virtual ChIP-seq" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://virchip.hoffmanlab.org" .
+
 <https://bio.tools/virtual_folder_for_structural_biology_projects> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3070 ;
     sc:author "Tomas Kulhanek" ;
@@ -488542,7 +521106,7 @@ The output of VirStrain contains two files. The first is a report file in text f
     biotools:primaryContact "Tomas Kulhanek" .
 
 <https://bio.tools/virtual_herbarium_altb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0780,
@@ -488562,7 +521126,7 @@ The output of VirStrain contains two files. The first is a report file in text f
     sc:url "http://altb.asu.ru" .
 
 <https://bio.tools/virtual_pharmacist> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0208,
@@ -488583,7 +521147,7 @@ The output of VirStrain contains two files. The first is a report file in text f
         "Zhoufang Li" .
 
 <https://bio.tools/virtual_ribosome> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0637,
@@ -488605,7 +521169,7 @@ The output of VirStrain contains two files. The first is a report file in text f
     biotools:primaryContact "Rasmus Wernersson" .
 
 <https://bio.tools/virtualpcr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_3374,
@@ -488625,18 +521189,18 @@ The output of VirStrain contains two files. The first is a report file in text f
 
 <https://bio.tools/virtualscreening> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ],
+            sc:additionalType "http://edamontology.org/data_0883" ;
+            sc:encodingFormat "http://edamontology.org/format_3816" ;
+            sc:name "Structure" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0883" ;
-            sc:name "Structure" ;
-            sc:sameAs "http://edamontology.org/data_0883" ] ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein structure" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein structure" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_3307,
         edam:topic_3314,
@@ -488658,7 +521222,7 @@ The output of VirStrain contains two files. The first is a report file in text f
     biotools:primaryContact "Pau Andrio" .
 
 <https://bio.tools/virtualtaste> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0820,
@@ -488679,7 +521243,7 @@ The output of VirStrain contains two files. The first is a report file in text f
         "Robert Preissner" .
 
 <https://bio.tools/virtus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0622,
         edam:topic_0769,
@@ -488696,8 +521260,30 @@ Virus transcript detection and quantification using normal human RNAseq. VIRTUS
     sc:name "VIRTUS" ;
     sc:url "https://github.com/yyoshiaki/VIRTUS" .
 
+<https://bio.tools/viruclust> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0199,
+        edam:topic_3299,
+        edam:topic_3305 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC030>,
+        "pubmed:35040923" ;
+    sc:description "Direct comparison of SARS-CoV-2 genomes and genetic variants in space and time." ;
+    sc:featureList edam:operation_2422,
+        edam:operation_3226,
+        edam:operation_3227 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Apache-2.0" ;
+    sc:name "ViruClust" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://github.com/DEIB-GECO/ViruClust/wiki/> ;
+    sc:url "http://gmql.eu/viruclust/" .
+
 <https://bio.tools/virulencefinder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
         edam:topic_0625,
@@ -488717,7 +521303,7 @@ Only data from one single isolate should be uploaded. If raw sequencing reads ar
     sc:url "http://cge.cbs.dtu.dk/services/VirulenceFinder/" .
 
 <https://bio.tools/virus-ckb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0202,
         edam:topic_0634,
@@ -488738,7 +521324,7 @@ Virus-CKB is a knowledgebase for COVID-19 and similar viral infection research t
     sc:url "https://www.cbligand.org/g/virus-ckb" .
 
 <https://bio.tools/virus_genotyping_tools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0625,
@@ -488759,7 +521345,7 @@ Virus-CKB is a knowledgebase for COVID-19 and similar viral infection research t
     biotools:primaryContact "Tulio de Oliveira" .
 
 <https://bio.tools/virusbanker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0097,
@@ -488776,7 +521362,7 @@ Virus-CKB is a knowledgebase for COVID-19 and similar viral infection research t
     sc:url "http://bioinformatics.org/virusbanker/" .
 
 <https://bio.tools/viruscircbase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0659,
         edam:topic_0781,
@@ -488795,7 +521381,7 @@ VirusCircBase(1.1), is a comprehensive database of circular RNA molecules encode
     sc:url "http://www.computationalbiology.cn/ViruscircBase/home.html" .
 
 <https://bio.tools/virusdip> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3068,
         edam:topic_3263,
@@ -488811,7 +521397,7 @@ The Coronavirus Disease 2019 (COVID-19) pandemic poses a huge threat to human pu
     sc:url "https://db.cngb.org/virus/virus" .
 
 <https://bio.tools/virushunter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0781 ;
     sc:citation <https://doi.org/10.1371/journal.pone.0078470> ;
@@ -488820,12 +521406,60 @@ The Coronavirus Disease 2019 (COVID-19) pandemic poses a huge threat to human pu
     sc:name "VirusHunter" ;
     sc:url "http://pathology.wustl.edu/VirusHunter/" .
 
+<https://bio.tools/viruslab> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0199,
+        edam:topic_0769,
+        edam:topic_0781,
+        edam:topic_3305 ;
+    sc:citation <https://doi.org/10.3390/BIOTECH10040027>,
+        "pmcid:PMC9245481",
+        "pubmed:35822801" ;
+    sc:description "A Tool for Customized SARS-CoV-2 Data Analysis. Comparative analysis and effective visualization of viral nucleotide and amino acid variants." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_2421,
+        edam:operation_2422,
+        edam:operation_3197 ;
+    sc:isAccessibleForFree true ;
+    sc:name "VirusLab" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://github.com/quantiaconsulting/virusLab_wiki/wiki> ;
+    sc:url "http://viruslab.quantiaconsulting.com/viruslab/" .
+
+<https://bio.tools/virusmed> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_0621,
+        edam:topic_0749,
+        edam:topic_2830,
+        edam:topic_3534 ;
+    sc:citation <https://doi.org/10.1107/S2052252521009076>,
+        "pmcid:PMC8479994",
+        "pubmed:34614039" ;
+    sc:description "Metal binding sites, antigen epitopes, and drug binding sites are viral protein hotspots that control how viruses interact with their hosts. Like Google maps organizes and annotates points of interest on the planet, virus-M-E-D (Metal binding sites, antigenic Epitopes, and Drug binding sites) recognizes the relative locations of individual hotspots of viral proteins, and depicts a collection of maps upon which newly-characterized functional sites can be marked as they are being discovered. While we define drug as small molecule compounds collected by the DrugBank database, other small molecules binders observed in complex viral protein structures were also cataloged." ;
+    sc:featureList edam:operation_0252,
+        edam:operation_0416,
+        edam:operation_0480,
+        edam:operation_3938 ;
+    sc:isAccessibleForFree true ;
+    sc:name "virusMED" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://virusmed.biocloud.top" .
+
 <https://bio.tools/virusmentha> a sc:SoftwareApplication ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0906" ;
-            sc:name "Protein interaction data" ;
-            sc:sameAs "http://edamontology.org/data_0906" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0906" ;
+            sc:encodingFormat "http://edamontology.org/format_3158" ;
+            sc:name "Protein interaction data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0781 ;
@@ -488851,22 +521485,19 @@ The Coronavirus Disease 2019 (COVID-19) pandemic poses a huge threat to human pu
 
 <https://bio.tools/virusmint> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2526" ;
-            sc:name "Text data" ;
-            sc:sameAs "http://edamontology.org/data_2526" ],
+            sc:additionalType "http://edamontology.org/data_2526" ;
+            sc:name "Text data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0906" ;
-            sc:name "Protein interaction data" ;
-            sc:sameAs "http://edamontology.org/data_0906" ] ;
+            sc:additionalType "http://edamontology.org/data_0906" ;
+            sc:name "Protein interaction data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0906" ;
-            sc:name "Protein interaction data" ;
-            sc:sameAs "http://edamontology.org/data_0906" ],
+            sc:additionalType "http://edamontology.org/data_0906" ;
+            sc:name "Protein interaction data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0906" ;
-            sc:name "Protein interaction data" ;
-            sc:sameAs "http://edamontology.org/data_0906" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0906" ;
+            sc:encodingFormat "http://edamontology.org/format_3158" ;
+            sc:name "Protein interaction data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0781 ;
@@ -488887,7 +521518,7 @@ The Coronavirus Disease 2019 (COVID-19) pandemic poses a huge threat to human pu
     biotools:primaryContact "Luana Licata" .
 
 <https://bio.tools/virusms> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
@@ -488908,7 +521539,7 @@ The Coronavirus Disease 2019 (COVID-19) pandemic poses a huge threat to human pu
         <https://orcid.org/0000-0003-0532-8331> .
 
 <https://bio.tools/virusseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0622 ;
@@ -488924,7 +521555,7 @@ The Coronavirus Disease 2019 (COVID-19) pandemic poses a huge threat to human pu
     biotools:primaryContact "Xiaoping Su" .
 
 <https://bio.tools/virustaxo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0196,
@@ -488946,7 +521577,7 @@ The Coronavirus Disease 2019 (COVID-19) pandemic poses a huge threat to human pu
     biotools:primaryContact <https://orcid.org/0000-0001-6747-6191> .
 
 <https://bio.tools/virusurf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0219,
@@ -488973,7 +521604,7 @@ The database is centered on sequences, described from their biological, technolo
     biotools:primaryContact <https://orcid.org/0000-0003-0671-2415> .
 
 <https://bio.tools/virusviz> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0154,
@@ -488998,14 +521629,13 @@ The database is centered on sequences, described from their biological, technolo
 
 <https://bio.tools/virvarseq> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3494" ;
-            sc:name "DNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3494" ] ;
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:encodingFormat "http://edamontology.org/format_2545" ;
+            sc:name "DNA sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0850" ;
-            sc:name "Sequence set" ;
-            sc:sameAs "http://edamontology.org/data_0850" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0850" ;
+            sc:name "Sequence set" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btu587> ;
@@ -489020,7 +521650,7 @@ The database is centered on sequences, described from their biological, technolo
     sc:url "https://sourceforge.net/projects/virtools/" .
 
 <https://bio.tools/virxicon> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0637,
         edam:topic_0781,
@@ -489036,7 +521666,7 @@ The database is centered on sequences, described from their biological, technolo
     sc:url "http://virxicon.cs.put.poznan.pl/" .
 
 <https://bio.tools/visant> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0202,
@@ -489065,7 +521695,7 @@ The database is centered on sequences, described from their biological, technolo
     biotools:primaryContact "VisANT Support" .
 
 <https://bio.tools/visar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0209,
         edam:topic_0769,
@@ -489082,7 +521712,7 @@ Here we took a step forward to interpret the learned features from deep neural n
     sc:url "https://github.com/qid12/visar" .
 
 <https://bio.tools/visbicluster> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3382,
         edam:topic_3518 ;
@@ -489097,8 +521727,31 @@ VisBicluster is an interactive, web based visualization technique designed to an
     sc:name "VisBicluster" ;
     sc:url "http://vis.usal.es/~visusal/visbicluster" .
 
+<https://bio.tools/viscar> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_2229,
+        edam:topic_3295,
+        edam:topic_3382,
+        edam:topic_3697,
+        edam:topic_3934 ;
+    sc:citation <https://doi.org/10.1186/S12859-021-04409-9>,
+        "pmcid:PMC8557071",
+        "pubmed:34715773" ;
+    sc:description "ViSCAR is a set of methods and corresponding functions, to visually explore and correlate single-cell attributes generated from the image processing of complex bacterial single-cell movies. It can be used to model and visualize the spatiotemporal evolution of attributes at different levels of the microbial community organization (i.e., cell population, colony, generation, etc.), to discover possible epigenetic information transfer across cell generations, infer mathematical and statistical models describing various stochastic phenomena (e.g., cell growth, cell division), and even identify and auto-correct errors introduced unavoidably during the bioimage analysis of a dense movie with thousands of overcrowded cells in the microscope's field of view." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3435,
+        edam:operation_3443 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "ViSCAR" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://gitlab.com/ManolakosLab/viscar" .
+
 <https://bio.tools/viscose> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -489117,7 +521770,7 @@ VisBicluster is an interactive, web based visualization technique designed to an
     sc:url "http://bio.math-inf.uni-greifswald.de/viscose/" .
 
 <https://bio.tools/viscover> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3810 ;
     sc:citation <https://doi.org/10.1002/BIMJ.202000029>,
@@ -489132,7 +521785,7 @@ Many variables of interest in agricultural or economical surveys have skewed dis
     sc:url "https://lyux.shinyapps.io/viscover/" .
 
 <https://bio.tools/visda> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0092,
@@ -489148,7 +521801,7 @@ Many variables of interest in agricultural or economical surveys have skewed dis
     biotools:primaryContact "Computational Bioinformatics and Bioimaging Laboratory" .
 
 <https://bio.tools/visen> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0602,
@@ -489165,7 +521818,7 @@ Many variables of interest in agricultural or economical surveys have skewed dis
     sc:url "https://sourceforge.net/projects/visen/" .
 
 <https://bio.tools/visgremlin> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0154,
         edam:topic_0160,
@@ -489184,7 +521837,7 @@ Interactions between proteins and non-proteic small molecule ligands play import
     sc:url "http://vagner.dti.ufv.br/visgremlin4" .
 
 <https://bio.tools/visgrid> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0166,
@@ -489198,7 +521851,7 @@ Interactions between proteins and non-proteic small molecule ligands play import
     sc:url "http://kiharalab.org/VisGrid/" .
 
 <https://bio.tools/vishic> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_1775,
@@ -489218,7 +521871,7 @@ Interactions between proteins and non-proteic small molecule ligands play import
     biotools:primaryContact "Contact Form" .
 
 <https://bio.tools/visibiome> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_3301 ;
@@ -489235,7 +521888,7 @@ Interactions between proteins and non-proteic small molecule ligands play import
     biotools:primaryContact "Andreas Henschel" .
 
 <https://bio.tools/visibioweb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0621,
@@ -489252,7 +521905,7 @@ Interactions between proteins and non-proteic small molecule ligands play import
     sc:url "http://visibioweb.patika.org" .
 
 <https://bio.tools/visinets> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3407 ;
@@ -489269,8 +521922,28 @@ Interactions between proteins and non-proteic small molecule ligands play import
     sc:softwareHelp <http://www.visinets.com/index.htm> ;
     sc:url "http://www.visinets.com/index.htm" .
 
+<https://bio.tools/vision_permutator> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_3382,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1109/TPAMI.2022.3145427>,
+        "pubmed:35077359" ;
+    sc:description "A Permutable MLP-Like Architecture for Visual Recognition." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_2475,
+        edam:operation_3436 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "Vision Permutator" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/Andrew-Qibin/VisionPermutator" .
+
 <https://bio.tools/visionet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -489286,14 +521959,35 @@ Interactions between proteins and non-proteic small molecule ligands play import
     sc:softwareHelp <http://visionet.erc.monash.edu.au/VISIONET_user_guide.html> ;
     sc:url "http://visionet.erc.monash.edu.au/index.html" .
 
+<https://bio.tools/visiontool> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_2229,
+        edam:topic_3382,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1038/S41598-022-16014-8>,
+        "pmcid:PMC9279291",
+        "pubmed:35831385" ;
+    sc:description "VisionTool is a python toolbox for pose estimation on videos containing actions. It is powered with a simple and intuititive Graphical User Interface (GUI) to allow a complete analysis from annotation to semantic features detection (e.g., joint position estimation)." ;
+    sc:featureList edam:operation_1812,
+        edam:operation_3443,
+        edam:operation_3937 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "VisionTool" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/Malga-Vision/VisionTool.git" .
+
 <https://bio.tools/visit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "VisIt is an Open Source, interactive, scalable, visualization, animation and analysis tool." ;
     sc:name "VisIt" ;
     sc:url "https://wci.llnl.gov/simulation/computer-codes/visit" .
 
 <https://bio.tools/visjs2jupyter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0602,
@@ -489310,7 +522004,7 @@ Interactions between proteins and non-proteic small molecule ligands play import
     biotools:primaryContact "Sara Brin Rosenthal" .
 
 <https://bio.tools/vismapper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0102,
@@ -489328,7 +522022,7 @@ Interactions between proteins and non-proteic small molecule ligands play import
     biotools:primaryContact "Joaquín Dopazo" .
 
 <https://bio.tools/visme> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_0769,
@@ -489344,7 +522038,7 @@ Interactions between proteins and non-proteic small molecule ligands play import
     sc:url "https://github.com/MunzT/VisME" .
 
 <https://bio.tools/vispa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0196,
@@ -489357,8 +522051,24 @@ Interactions between proteins and non-proteic small molecule ligands play import
     sc:softwareHelp <http://alan.cs.gsu.edu/NGS/sites/default/files/readme_vispa_mosaik.txt> ;
     sc:url "http://alan.cs.gsu.edu/NGS/?q=content/vispa" .
 
+<https://bio.tools/vispa_vision_spaces> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3382,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.31234/OSF.IO/N4DMQ> ;
+    sc:description "A computer-vision-based representation system for individual images and concept prototypes, with large-scale evaluation." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3443 ;
+    sc:isAccessibleForFree true ;
+    sc:name "ViSpa" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://vispa.fritzguenther.de" .
+
 <https://bio.tools/vispig> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -489378,7 +522088,7 @@ Interactions between proteins and non-proteic small molecule ligands play import
     biotools:primaryContact "Support" .
 
 <https://bio.tools/vispr-online> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0099 ;
@@ -489398,8 +522108,31 @@ Interactions between proteins and non-proteic small molecule ligands play import
     sc:softwareHelp <https://github.com/lemoncyb/VISPR-online> ;
     sc:url "http://vispr-online.weililab.org" .
 
+<https://bio.tools/visprodom> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0736,
+        edam:topic_0780,
+        edam:topic_3512,
+        edam:topic_3945 ;
+    sc:citation <https://doi.org/10.1186/S12864-022-08713-3>,
+        "pmcid:PMC9235191",
+        "pubmed:35761171" ;
+    sc:description "An interactive Shiny/R application for displaying protein domains with transcriptional features." ;
+    sc:featureList edam:operation_0224,
+        edam:operation_0303,
+        edam:operation_0337 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "VisProDom" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://whweve.shinyapps.io/VisProDom" .
+
 <https://bio.tools/visrd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0092,
@@ -489416,7 +522149,7 @@ Interactions between proteins and non-proteic small molecule ligands play import
     sc:url "http://www.uea.ac.uk/computing/phylogenetics-software-visrd" .
 
 <https://bio.tools/vissr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Suite" ;
     sc:applicationSubCategory edam:topic_3308 ;
@@ -489432,7 +522165,7 @@ Interactions between proteins and non-proteic small molecule ligands play import
     biotools:primaryContact "Forum" .
 
 <https://bio.tools/vista> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
@@ -489477,7 +522210,7 @@ Interactions between proteins and non-proteic small molecule ligands play import
     biotools:primaryContact "Vista Support" .
 
 <https://bio.tools/vista_enhancer_browser> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0607,
@@ -489500,7 +522233,7 @@ Interactions between proteins and non-proteic small molecule ligands play import
     sc:url "https://enhancer.lbl.gov/frnt_page_n.shtml" .
 
 <https://bio.tools/vistcr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0632,
         edam:topic_0769,
         edam:topic_2830,
@@ -489518,7 +522251,7 @@ VisTCR is an open source software that provides an interactive visualization of
     sc:url "https://github.com/qingshanni/VisTCR" .
 
 <https://bio.tools/vistoseg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3170,
@@ -489538,7 +522271,7 @@ VisTCR is an open source software that provides an interactive visualization of
     sc:url "http://research.libd.org/VistoSeg" .
 
 <https://bio.tools/vistrajectory> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_3170,
@@ -489555,7 +522288,7 @@ VisTCR is an open source software that provides an interactive visualization of
     biotools:primaryContact "Lan Huong Nguyen" .
 
 <https://bio.tools/visual3d> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3382 ;
     sc:description "It uses OpenGL textures to generate a 3D visualization of confocal and wide field fluorescence microscopy images. Custom color palettes can be applied to grey value images. AVI movies can be created with a build in script engine." ;
@@ -489566,7 +522299,7 @@ VisTCR is an open source software that provides an interactive visualization of
     sc:url "http://freeware.ronhoebe.com/free/Visual3D.asp" .
 
 <https://bio.tools/visualcna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2275,
@@ -489583,7 +522316,7 @@ VisTCR is an open source software that provides an interactive visualization of
     sc:url "http://cpclab.uni-duesseldorf.de/software" .
 
 <https://bio.tools/visualife> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0091,
@@ -489603,7 +522336,7 @@ VisTCR is an open source software that provides an interactive visualization of
     biotools:primaryContact <https://orcid.org/0000-0002-2260-2083> .
 
 <https://bio.tools/visualisation_tools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_2259 ;
     sc:citation <https://doi.org/10.1038/msb4100018> ;
@@ -489614,8 +522347,28 @@ VisTCR is an open source software that provides an interactive visualization of
     sc:softwareHelp <http://millar.bio.ed.ac.uk/PEBrown/vt/Tools.htm> ;
     sc:url "http://millar.bio.ed.ac.uk/PEBrown/vt/Tools.htm" .
 
+<https://bio.tools/visustatr> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_2269,
+        edam:topic_3382 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC191>,
+        "pubmed:35445697" ;
+    sc:description "Visualizing Motility and Morphology Statistics on Images in R." ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3553,
+        edam:operation_3891 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "VisuStatR" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/grrchrr/VisuStatR/" .
+
 <https://bio.tools/vitapad> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0602,
@@ -489630,8 +522383,47 @@ VisTCR is an open source software that provides an interactive visualization of
     sc:softwareHelp <https://sourceforge.net/projects/vitapad/> ;
     sc:url "http://sourceforge.net/projects/vitapad/" .
 
+<https://bio.tools/vitapred> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:citation <https://doi.org/10.1186/1471-2105-14-44>,
+        "pmcid:PMC3577447",
+        "pubmed:23387468" ;
+    sc:description "VitaPred is a SVM (Support Vector Machines) based prediction method for the vitamin-interacting residues in protein sequences." ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "vitapred" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/vitapred/> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/vitapred/" .
+
+<https://bio.tools/viterbrain> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0160,
+        edam:topic_0196,
+        edam:topic_2269,
+        edam:topic_3304,
+        edam:topic_3382 ;
+    sc:citation <https://doi.org/10.1038/S42003-022-03320-0>,
+        "pmcid:PMC9038756",
+        "pubmed:35468989" ;
+    sc:description "Hidden Markov modeling for maximum probability neuron reconstruction." ;
+    sc:featureList edam:operation_0267,
+        edam:operation_0296,
+        edam:operation_3283,
+        edam:operation_3450 ;
+    sc:isAccessibleForFree true ;
+    sc:name "ViterBrain" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://brainlit.neurodata.io/viterbrain.html" .
+
 <https://bio.tools/vitivar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0634,
         edam:topic_3170,
@@ -489653,18 +522445,16 @@ Vitiligo in-house expression data from lesional and non-lesional epidermal tissu
 
 <https://bio.tools/vitram> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Gene expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ] ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Gene expression data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ],
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:name "Pathway or network" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:name "Image" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btp400> ;
@@ -489679,7 +522469,7 @@ Vitiligo in-house expression data from lesional and non-lesional epidermal tissu
     sc:url "http://bioinformatics.intec.ugent.be/kmarchal/ViTraM/Index.html" .
 
 <https://bio.tools/viva-variant> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0749,
         edam:topic_3168 ;
@@ -489695,7 +522485,7 @@ Vitiligo in-house expression data from lesional and non-lesional epidermal tissu
     sc:url "https://compbiocore.github.io/VariantVisualization.jl/latest/" .
 
 <https://bio.tools/vivagen> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2815,
         edam:topic_3360,
         edam:topic_3372 ;
@@ -489711,7 +522501,7 @@ An amendment to this paper has been published and can be accessed via the origin
     sc:url "https://sourceforge.net/projects/vivagen/" .
 
 <https://bio.tools/vivaldi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0593,
         edam:topic_2275,
@@ -489729,7 +522519,7 @@ An amendment to this paper has been published and can be accessed via the origin
     sc:url "http://www.ebi.ac.uk/pdbe/vivaldi/" .
 
 <https://bio.tools/vivan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0781,
@@ -489746,7 +522536,7 @@ An amendment to this paper has been published and can be accessed via the origin
     biotools:primaryContact "The ViVan team at Dr. Noam Shomron Lab" .
 
 <https://bio.tools/vivarium-collective> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3307,
@@ -489764,7 +522554,7 @@ An amendment to this paper has been published and can be accessed via the origin
         <https://orcid.org/0000-0003-1279-2474> .
 
 <https://bio.tools/vivasemtabaco> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0202,
         edam:topic_0749,
         edam:topic_3068 ;
@@ -489776,7 +522566,7 @@ An amendment to this paper has been published and can be accessed via the origin
     sc:url "https://github.com/crepeia/wati" .
 
 <https://bio.tools/vivaxGEN-geo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_2885,
         edam:topic_3302 ;
@@ -489788,7 +522578,7 @@ An amendment to this paper has been published and can be accessed via the origin
     sc:url "http://vivaxgen.menzies.edu.au/" .
 
 <https://bio.tools/vivaxgen> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0157,
         edam:topic_3302,
@@ -489808,7 +522598,7 @@ An amendment to this paper has been published and can be accessed via the origin
     biotools:primaryContact "Sarah Auburn" .
 
 <https://bio.tools/vizardous> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0602,
@@ -489825,7 +522615,7 @@ An amendment to this paper has been published and can be accessed via the origin
     sc:url "https://github.com/modsim/vizardous" .
 
 <https://bio.tools/vizstruct> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_2885 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btl144>,
@@ -489843,7 +522633,7 @@ An amendment to this paper has been published and can be accessed via the origin
     sc:url "https://www.cse.buffalo.edu/DBGROUP/bioinformatics/supplementary/vizstruct/index.html" .
 
 <https://bio.tools/vkcdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0084,
@@ -489862,7 +522652,7 @@ An amendment to this paper has been published and can be accessed via the origin
     biotools:primaryContact "W. Gallin" .
 
 <https://bio.tools/vlad> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0623,
@@ -489881,8 +522671,23 @@ An amendment to this paper has been published and can be accessed via the origin
     sc:url "http://proto.informatics.jax.org/prototypes/vlad/" ;
     biotools:primaryContact "Carol J. Bult" .
 
+<https://bio.tools/vlcvirus> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3307 ;
+    sc:citation <https://doi.org/10.1016/j.compbiomed.2021.104215>,
+        "pubmed:33465550" ;
+    sc:description "A Web Resource For Designing Subunit Vaccine Candidates Against Lung Cancer Associated Viruses" ;
+    sc:featureList edam:operation_2945 ;
+    sc:name "vlcvirus" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://webs.iiitd.edu.in/raghava/vlcvirus/> ;
+    sc:url "https://webs.iiitd.edu.in/raghava/vlcvirus/" .
+
 <https://bio.tools/vldp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0130,
@@ -489906,7 +522711,7 @@ An amendment to this paper has been published and can be accessed via the origin
         "Sylvain Leonard" .
 
 <https://bio.tools/vlume> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3277,
         edam:topic_3306,
         edam:topic_3382 ;
@@ -489921,7 +522726,7 @@ An important feature of vLUME the ability to perform local analysis on a subregi
     sc:url "https://github.com/lumevr/vLume_OpenSourcePlugins" .
 
 <https://bio.tools/vmatch> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0622,
@@ -489938,7 +522743,7 @@ An important feature of vLUME the ability to perform local analysis on a subregi
     biotools:primaryContact "Prof. Dr. Stefan Kurtz" .
 
 <https://bio.tools/vmcmc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_2269,
@@ -489958,7 +522763,7 @@ An important feature of vLUME the ability to perform local analysis on a subregi
     biotools:primaryContact "Raja H. Ali" .
 
 <https://bio.tools/vmp-viewer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -489974,7 +522779,7 @@ An important feature of vLUME the ability to perform local analysis on a subregi
     biotools:primaryContact "Antoine Bruguier" .
 
 <https://bio.tools/vnd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0199,
@@ -489997,7 +522802,7 @@ An important feature of vLUME the ability to perform local analysis on a subregi
     biotools:primaryContact "Sanghyuk Lee" .
 
 <https://bio.tools/vntrfinder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0157,
@@ -490014,7 +522819,7 @@ An important feature of vLUME the ability to perform local analysis on a subregi
     sc:url "https://sites.google.com/a/codushlaine.com/colm-o-dushlaine/Data" .
 
 <https://bio.tools/vocs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0654,
@@ -490031,7 +522836,7 @@ An important feature of vLUME the ability to perform local analysis on a subregi
     sc:url "https://virology.uvic.ca/virology-ca-tools/vocs/" .
 
 <https://bio.tools/voe> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0622,
@@ -490050,7 +522855,7 @@ An important feature of vLUME the ability to perform local analysis on a subregi
     biotools:primaryContact "Contact form" .
 
 <https://bio.tools/vogdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0781,
         edam:topic_2259 ;
@@ -490065,7 +522870,7 @@ An important feature of vLUME the ability to perform local analysis on a subregi
     biotools:primaryContact "CUBE-AT" .
 
 <https://bio.tools/void_editor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0202,
         edam:topic_2258 ;
@@ -490081,8 +522886,27 @@ An important feature of vLUME the ability to perform local analysis on a subregi
     sc:url "http://voideditor.cs.man.ac.uk/" ;
     biotools:primaryContact "Lefteris Tatakis" .
 
+<https://bio.tools/vol2brain> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0769,
+        edam:topic_3384,
+        edam:topic_3444 ;
+    sc:citation <https://doi.org/10.3389/FNINF.2022.862805>,
+        "pmcid:PMC9171328",
+        "pubmed:35685943" ;
+    sc:description "A New Online Pipeline for Whole Brain MRI Analysis." ;
+    sc:featureList edam:operation_3435,
+        edam:operation_3799 ;
+    sc:isAccessibleForFree true ;
+    sc:name "vol2Brain" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://volbrain.upv.es" .
+
 <https://bio.tools/volarea> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0081,
@@ -490100,7 +522924,7 @@ An important feature of vLUME the ability to perform local analysis on a subregi
     sc:url "http://www.fc.up.pt/PortoBioComp/Software/Volarea/Home.html" .
 
 <https://bio.tools/volcanoser> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0203,
         edam:topic_0622 ;
@@ -490116,7 +522940,7 @@ A Shiny App for making Volcano plots.""" ;
     sc:url "http://goedhart.shinyapps.io/VolcaNoseR/" .
 
 <https://bio.tools/volocity> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3382 ;
     sc:description "It is the universal solution for 3D analysis of fluorescence microscopy images.  A collection of high performance 3D imaging software products, Volocity lets you turn images into understanding, relate cellular structure to function and deliver quantitative measurements for publication." ;
@@ -490128,7 +522952,7 @@ A Shiny App for making Volcano plots.""" ;
     sc:url "http://www.perkinelmer.co.uk/lab-solutions/resources/docs/BRO_VolocityBrochure_PerkinElmer.pdf" .
 
 <https://bio.tools/volta> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0769,
@@ -490148,7 +522972,7 @@ A Shiny App for making Volcano plots.""" ;
     sc:url "https://github.com/fhaive/VOLTA" .
 
 <https://bio.tools/volume_browser> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3382 ;
     sc:description "Volume Browser created at the Pittsburgh Supercomputing Center (PSC) enables you to view large three dimensional images (datasets) over the internet. You can interact with with the image to view from any angle, or slice through it to see inside. You can also trace and label sections of the image. The PSC Volume Browser is a breathrough in 3D imaging because it allows you to view uncompressed datasets from a desktop computer that wouldn’t have the capability view such data on its own." ;
@@ -490160,7 +522984,7 @@ A Shiny App for making Volcano plots.""" ;
     sc:url "http://www.nrbsc.org/vb/index.php" .
 
 <https://bio.tools/volumetric3> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3304,
@@ -490180,7 +523004,7 @@ A Shiny App for making Volcano plots.""" ;
     biotools:primaryContact "Alice J. O'Toole" .
 
 <https://bio.tools/vombat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0203,
@@ -490197,7 +523021,7 @@ A Shiny App for making Volcano plots.""" ;
     sc:url "https://www2.informatik.uni-halle.de:8443/VOMBAT/faces/pages/choose.jsp" .
 
 <https://bio.tools/vonode> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3168,
@@ -490210,7 +523034,7 @@ A Shiny App for making Volcano plots.""" ;
     sc:url "http://www.omicsbio.org/" .
 
 <https://bio.tools/vopo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0804,
         edam:topic_3421,
@@ -490227,7 +523051,7 @@ A Shiny App for making Volcano plots.""" ;
     sc:url "https://github.com/stanleyn/VoPo" .
 
 <https://bio.tools/vorocnn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0130,
         edam:topic_0736,
@@ -490243,7 +523067,7 @@ VoroCNN is a novel method for local residue-level quality assessment of protein
     sc:url "https://team.inria.fr/nano-d/software/vorocnn/" .
 
 <https://bio.tools/vorocontacts> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -490266,7 +523090,7 @@ VoroCNN is a novel method for local residue-level quality assessment of protein
     sc:url "https://bioinformatics.lt/wtsam/vorocontacts" .
 
 <https://bio.tools/voromqa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0736 ;
@@ -490281,7 +523105,7 @@ VoroCNN is a novel method for local residue-level quality assessment of protein
     sc:url "http://www.bti.vu.lt/en/departments/department-of-bioinformatics/software/voromqa" .
 
 <https://bio.tools/voronoia> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0081,
@@ -490306,7 +523130,7 @@ VoroCNN is a novel method for local residue-level quality assessment of protein
     sc:url "https://github.com/krother/Voronoia" .
 
 <https://bio.tools/vphylomm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0209,
         edam:topic_0602,
@@ -490324,7 +523148,7 @@ VoroCNN is a novel method for local residue-level quality assessment of protein
     sc:url "http://vphylomm.sourceforge.net/" .
 
 <https://bio.tools/vplg> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_2814,
@@ -490341,8 +523165,32 @@ VoroCNN is a novel method for local residue-level quality assessment of protein
     sc:softwareHelp <http://www.bioinformatik.uni-frankfurt.de/tools/vplg/index.html#Documentation> ;
     sc:url "http://www.bioinformatik.uni-frankfurt.de/tools/vplg/index.html" .
 
+<https://bio.tools/vpmbench> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0199,
+        edam:topic_0622,
+        edam:topic_0769,
+        edam:topic_3673,
+        edam:topic_3676 ;
+    sc:citation <https://doi.org/10.1186/S12859-021-04458-0>,
+        "pmcid:PMC8576923",
+        "pubmed:34749640" ;
+    sc:description "A test bench for variant prioritization methods" ;
+    sc:featureList edam:operation_3225,
+        edam:operation_3226,
+        edam:operation_3227 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "VPMBench" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://vpmbench.readthedocs.io/en/latest/> ;
+    sc:url "https://github.com/IDEA-PRIO/VPMBench" .
+
 <https://bio.tools/vptmdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0121,
         edam:topic_0154,
@@ -490359,8 +523207,49 @@ In viruses, posttranslational modifications (PTMs) are essential for their life
     sc:name "VPTMdb" ;
     sc:url "http://vptmdb.com:8787/VPTMdb/" .
 
+<https://bio.tools/vqamix> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_2269,
+        edam:topic_3384,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1109/TMI.2022.3185008>,
+        "pubmed:35727773" ;
+    sc:description "Conditional Triplet Mixup for Medical Visual Question Answering." ;
+    sc:featureList edam:operation_0337 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "VQAMix" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/haifangong/VQAMix" .
+
+<https://bio.tools/vrhyme> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0196,
+        edam:topic_0621,
+        edam:topic_3174,
+        edam:topic_3474,
+        edam:topic_3697 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAC341>,
+        "pubmed:35544285" ;
+    sc:description "vRhyme enables binning of viral genomes from metagenomes." ;
+    sc:featureList edam:operation_3192,
+        edam:operation_3198,
+        edam:operation_3216,
+        edam:operation_3798 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "vRhyme" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/AnantharamanLab/vRhyme" .
+
 <https://bio.tools/vria> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_3361,
         edam:topic_3474 ;
@@ -490373,8 +523262,25 @@ visualization charts augmented-reality data-visualization virtual-reality webxr
     sc:name "VRIA" ;
     sc:url "https://github.com/vriajs" .
 
+<https://bio.tools/vrmlgen> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0085,
+        edam:topic_0092 ;
+    sc:citation <https://doi.org/10.18637/jss.v036.i08> ;
+    sc:description """VRMLGen is a free software package for 3D data visualisation on the web. It supports VRML and LiveGraphics3D formats. The package runs within the R environment for statistical computing and is available for download from CRAN. It is licensed under the terms of GNU GPL version 2 (or later).
+VRMLGen can be used to generate 3D line and bar charts, scatter plots with density estimation contour surfaces, visualizations of height maps, parametric functions and 3D object models.""" ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-2.0" ;
+    sc:name "VRMLGen" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareVersion "1.4.9" ;
+    sc:url "https://ico2s.org/software/vrmlgen.html" .
+
 <https://bio.tools/vrmol> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0153,
         edam:topic_0154,
         edam:topic_0199,
@@ -490394,7 +523300,7 @@ VRmol is an easy-to-use web-based tool capable of visualizing and integratively
     sc:url "https://VRmol.net" .
 
 <https://bio.tools/vrnetzer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -490414,8 +523320,33 @@ VRmol is an easy-to-use web-based tool capable of visualizing and integratively
     sc:url "https://github.com/menchelab/VRNetzer" ;
     biotools:primaryContact <https://orcid.org/0000-0002-1583-6404> .
 
+<https://bio.tools/vrprofile2> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Nucleic acid sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0798,
+        edam:topic_3068,
+        edam:topic_3305 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAC321>,
+        "pmcid:PMC9252795",
+        "pubmed:35524563" ;
+    sc:description "Detection of antibiotic resistance-associated mobilome in bacterial pathogens." ;
+    sc:featureList edam:operation_2422,
+        edam:operation_3461,
+        edam:operation_3482 ;
+    sc:isAccessibleForFree true ;
+    sc:name "VRprofile2" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://tool2-mml.sjtu.edu.cn/VRprofile/docs/#/> ;
+    sc:url "https://tool2-mml.sjtu.edu.cn/VRprofile" .
+
 <https://bio.tools/vsampler> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_2885,
         edam:topic_3173,
@@ -490434,18 +523365,18 @@ vSampler runs significantly faster than existing tools, supports both SNPs and i
 
 <https://bio.tools/vsclust> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ] ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Expression data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3768" ;
-            sc:name "Clustered expression profiles" ;
-            sc:sameAs "http://edamontology.org/data_3768" ],
+            sc:additionalType "http://edamontology.org/data_3768" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Clustered expression profiles" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3932" ;
-            sc:name "Q-value" ;
-            sc:sameAs "http://edamontology.org/data_3932" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3932" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Q-value" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -490467,11 +523398,11 @@ vSampler runs significantly faster than existing tools, supports both SNPs and i
         "Mac",
         "Windows" ;
     sc:softwareHelp <https://bitbucket.org/veitveit/vsclust> ;
-    sc:url "http://computproteomics.bmb.sdu.dk:8192/app_direct/VSClust/" ;
+    sc:url "http://computproteomics.bmb.sdu.dk/Apps/VSClust/" ;
     biotools:primaryContact "Veit Schwämmle" .
 
 <https://bio.tools/vsdmip> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_2275,
         edam:topic_2814,
@@ -490488,7 +523419,7 @@ vSampler runs significantly faster than existing tools, supports both SNPs and i
     sc:url "http://ub.cbm.uam.es/software/vsdmip/" .
 
 <https://bio.tools/vseams> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0622,
@@ -490506,18 +523437,15 @@ vSampler runs significantly faster than existing tools, supports both SNPs and i
 
 <https://bio.tools/vsearch> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ] ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:name "Nucleic acid sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:name "Sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0865" ;
-            sc:name "Sequence similarity score" ;
-            sc:sameAs "http://edamontology.org/data_0865" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0865" ;
+            sc:name "Sequence similarity score" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3174 ;
@@ -490536,7 +523464,7 @@ vSampler runs significantly faster than existing tools, supports both SNPs and i
     sc:url "https://github.com/torognes/vsearch" .
 
 <https://bio.tools/vseq-toolkit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0114,
         edam:topic_0622,
         edam:topic_3673,
@@ -490551,20 +523479,29 @@ vSampler runs significantly faster than existing tools, supports both SNPs and i
     sc:name "VSeq-Toolkit" ;
     sc:url "https://github.com/CompMeth/VSeq-Toolkit" .
 
+<https://bio.tools/vsl2> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:citation <https://doi.org/10.1186/1471-2105-7-208> ;
+    sc:description "VSL2 is a predictor model that is applicable to disordered regions of any length and can accurately identify the short disordered regions that are often misclassified by other disorder predictors." ;
+    sc:isAccessibleForFree true ;
+    sc:name "VSL2" ;
+    sc:operatingSystem "Linux" ;
+    sc:url "http://www.ist.temple.edu/disprot/predictorVSL2.php" .
+
 <https://bio.tools/vsm> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2338" ;
-            sc:name "Ontology identifier" ;
-            sc:sameAs "http://edamontology.org/data_2338" ] ;
+            sc:additionalType "http://edamontology.org/data_2338" ;
+            sc:name "Ontology identifier" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2353" ;
-            sc:name "Ontology data" ;
-            sc:sameAs "http://edamontology.org/data_2353" ],
+            sc:additionalType "http://edamontology.org/data_2353" ;
+            sc:encodingFormat "http://edamontology.org/format_3464" ;
+            sc:name "Ontology data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2353" ;
-            sc:name "Ontology data" ;
-            sc:sameAs "http://edamontology.org/data_2353" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2353" ;
+            sc:encodingFormat "http://edamontology.org/format_2376" ;
+            sc:name "Ontology data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0219,
         edam:topic_0621,
@@ -490595,7 +523532,7 @@ This user interface is a JavaScript component that can be embedded in web apps w
     biotools:primaryContact <https://orcid.org/0000-0002-3136-7353> .
 
 <https://bio.tools/vsn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -490618,7 +523555,7 @@ This user interface is a JavaScript component that can be embedded in web apps w
     biotools:primaryContact <http://orcid.org/0000-0002-0474-2218> .
 
 <https://bio.tools/vss> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0593,
         edam:topic_0749,
         edam:topic_3169,
@@ -490637,7 +523574,7 @@ Variance-stabilized signals (VSS) is a signal transformation approach used for e
     sc:url "https://github.com/faezeh-bayat/Variance-stabilized-units-for-sequencing-based-genomic-signals" .
 
 <https://bio.tools/vstseed> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
@@ -490658,7 +523595,7 @@ Variance-stabilized signals (VSS) is a signal transformation approach used for e
     sc:url "https://github.com/vtman/VSTseed" .
 
 <https://bio.tools/vt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0160,
@@ -490674,7 +523611,7 @@ Variance-stabilized signals (VSS) is a signal transformation approach used for e
     sc:url "http://genome.sph.umich.edu/wiki/Vt" .
 
 <https://bio.tools/vtbuilder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3308 ;
@@ -490688,7 +523625,7 @@ Variance-stabilized signals (VSS) is a signal transformation approach used for e
     sc:url "http://www.lstmed.ac.uk/vtbuilder" .
 
 <https://bio.tools/vtes> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3305,
         edam:topic_3322,
         edam:topic_3324 ;
@@ -490701,8 +523638,31 @@ Repository for the code that simulates disease transmission among individuals.""
     sc:name "VTES" ;
     sc:url "https://github.com/sstagg/disease-transmission" .
 
+<https://bio.tools/vthunter> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0099,
+        edam:topic_0781,
+        edam:topic_3308,
+        edam:topic_3324,
+        edam:topic_3500 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAB894>,
+        "pmcid:PMC8728219",
+        "pubmed:34634807" ;
+    sc:description "A database for single-cell screening of virus target cells in the animal kingdom." ;
+    sc:featureList edam:operation_0224,
+        edam:operation_0314,
+        edam:operation_3891 ;
+    sc:isAccessibleForFree true ;
+    sc:name "VThunter" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://db.cngb.org/VThunter/" .
+
 <https://bio.tools/vtools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0769,
@@ -490720,7 +523680,7 @@ Repository for the code that simulates disease transmission among individuals.""
     sc:url "http://varianttools.sourceforge.net/" .
 
 <https://bio.tools/vtpnet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0199,
@@ -490742,7 +523702,7 @@ Repository for the code that simulates disease transmission among individuals.""
     biotools:primaryContact "VJ Carey" .
 
 <https://bio.tools/vtr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0130,
         edam:topic_0154,
@@ -490764,7 +523724,7 @@ VTR is a WebTool for contacts alignments between proteins and others macromolecu
     sc:url "http://bioinfo.dcc.ufmg.br/vtr" .
 
 <https://bio.tools/vulcan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2259,
@@ -490787,8 +523747,22 @@ VTR is a WebTool for contacts alignments between proteins and others macromolecu
     biotools:primaryContact <http://orcid.org/0000-0002-7325-9908> .
 
 <https://bio.tools/vulcanSpot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
-    sc:additionalType "Web application" ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2299" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Gene name" ] ;
+    bsc:output [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_0984" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Molecule name" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2299" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Gene name" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web API",
+        "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2640,
         edam:topic_3053 ;
@@ -490803,18 +523777,21 @@ VTR is a WebTool for contacts alignments between proteins and others macromolecu
     sc:operatingSystem "Linux",
         "Mac",
         "Windows" ;
+    sc:provider "BU_CNIO",
+        "CNIO" ;
     sc:softwareHelp <http://www.vulcanspot.org/help> ;
+    sc:softwareVersion "v1.0.0b" ;
     sc:url "http://www.vulcanspot.org/" ;
-    biotools:primaryContact "Dr. Fátima Al-Shahrour" .
+    biotools:primaryContact <https://orcid.org/0000-0003-2373-769X> .
 
 <https://bio.tools/vulcan_mapper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "Improved long-read mapping and structural variant calling via dual-mode alignment" ;
     sc:name "Vulcan" ;
     sc:url "https://gitlab.com/treangenlab/vulcan" .
 
 <https://bio.tools/w-chipeaks> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3168,
@@ -490830,7 +523807,7 @@ VTR is a WebTool for contacts alignments between proteins and others macromolecu
     sc:url "http://compbio.uthscsa.edu/W-ChIPeaks/" .
 
 <https://bio.tools/w-chipmotifs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3169,
@@ -490846,7 +523823,7 @@ VTR is a WebTool for contacts alignments between proteins and others macromolecu
     sc:url "http://compbio.uthscsa.edu/ChIPMotifs/" .
 
 <https://bio.tools/w-iq-tree> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3053,
         edam:topic_3293,
@@ -490865,7 +523842,7 @@ VTR is a WebTool for contacts alignments between proteins and others macromolecu
     biotools:primaryContact "Minh BQ" .
 
 <https://bio.tools/w2rap-contigger> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0622 ;
@@ -490880,7 +523857,7 @@ VTR is a WebTool for contacts alignments between proteins and others macromolecu
     sc:url "https://github.com/bioinfologics/w2rap-contigger" .
 
 <https://bio.tools/w3DNA> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0097,
@@ -490905,7 +523882,7 @@ VTR is a WebTool for contacts alignments between proteins and others macromolecu
         "Xiang-Jun Lu" .
 
 <https://bio.tools/w4cseq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_3168,
@@ -490922,7 +523899,7 @@ VTR is a WebTool for contacts alignments between proteins and others macromolecu
     biotools:primaryContact "Mingyang Cai" .
 
 <https://bio.tools/waddaica> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0209,
@@ -490945,7 +523922,7 @@ VTR is a WebTool for contacts alignments between proteins and others macromolecu
     sc:url "https://bqflab.github.io" .
 
 <https://bio.tools/waddr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2269,
@@ -490964,7 +523941,7 @@ VTR is a WebTool for contacts alignments between proteins and others macromolecu
         "Roman Schefzik" .
 
 <https://bio.tools/waffect> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0634,
@@ -490981,7 +523958,7 @@ VTR is a WebTool for contacts alignments between proteins and others macromolecu
     sc:url "http://nuel.perso.math.cnrs.fr/#software" .
 
 <https://bio.tools/waggawagga> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -491001,7 +523978,7 @@ VTR is a WebTool for contacts alignments between proteins and others macromolecu
     biotools:primaryContact "Martin Kollmar" .
 
 <https://bio.tools/walter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_0780,
@@ -491022,18 +523999,18 @@ VTR is a WebTool for contacts alignments between proteins and others macromolecu
 
 <https://bio.tools/war> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3495" ;
-            sc:name "RNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3495" ],
+            sc:additionalType "http://edamontology.org/data_3495" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "RNA sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1961" ;
+            sc:name "Sequence alignment" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_1961" ;
+            sc:name "Sequence alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1093/nar/gkn275> ;
@@ -491050,8 +524027,29 @@ VTR is a WebTool for contacts alignments between proteins and others macromolecu
     sc:url "http://genome.ku.dk/resources/war/" ;
     biotools:primaryContact "Stinus Lindgreen" .
 
+<https://bio.tools/ware> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0625,
+        edam:topic_0634,
+        edam:topic_0749,
+        edam:topic_3577 ;
+    sc:citation <https://doi.org/10.3390/JPM12071034>,
+        "pmcid:PMC9321802",
+        "pubmed:35887531" ;
+    sc:description "Wet AMD Risk-Evaluation Tool as a Clinical Decision-Support System Integrating Genetic and Non-Genetic Factors." ;
+    sc:featureList edam:operation_3196,
+        edam:operation_3435 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "WARE" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/Andreater/WARE-AMD-Tool" .
+
 <https://bio.tools/warpgroup> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2814,
         edam:topic_3172,
@@ -491068,18 +524066,18 @@ VTR is a WebTool for contacts alignments between proteins and others macromolecu
 
 <https://bio.tools/warpp> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ] ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein structure" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1772" ;
-            sc:name "Score" ;
-            sc:sameAs "http://edamontology.org/data_1772" ],
+            sc:additionalType "http://edamontology.org/data_1772" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Score" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein structure" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0123 ;
     sc:citation <https://doi.org/10.1021/acs.jcim.8b00271> ;
@@ -491094,7 +524092,7 @@ In the corresponding publication we showed that WarPP is able to place 80% of wa
     sc:url "http://proteinsplus.zbh.uni-hamburg.de/#warpp" .
 
 <https://bio.tools/warpp-plants> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0610,
@@ -491115,7 +524113,7 @@ In the corresponding publication we showed that WarPP is able to place 80% of wa
     biotools:primaryContact <https://orcid.org/0000-0001-5785-9500> .
 
 <https://bio.tools/wasabi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0092,
@@ -491131,8 +524129,28 @@ In the corresponding publication we showed that WarPP is able to place 80% of wa
     sc:softwareHelp <http://wasabiapp.org/about/> ;
     sc:url "http://wasabiapp.org/" .
 
+<https://bio.tools/washu_epigenome_browser> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0621,
+        edam:topic_3168,
+        edam:topic_3173,
+        edam:topic_3382,
+        edam:topic_3500 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAC238>,
+        "pubmed:35412637" ;
+    sc:description "WashU Epigenome Browser is a web-based genomic data exploration tool that provides visualization, integration, and analysis of epigenomic datasets." ;
+    sc:featureList edam:operation_3208 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Freeware" ;
+    sc:name "WashU Epigenome Browser" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/lidaof/eg-react" .
+
 <https://bio.tools/wasp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0632,
         edam:topic_2885,
@@ -491150,7 +524168,7 @@ In the corresponding publication we showed that WarPP is able to place 80% of wa
     biotools:primaryContact <http://orcid.org/0000-0002-1491-1839> .
 
 <https://bio.tools/wasp-rna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0769,
@@ -491175,7 +524193,7 @@ In the corresponding publication we showed that WarPP is able to place 80% of wa
     biotools:primaryContact <https://orcid.org/0000-0002-0451-2519> .
 
 <https://bio.tools/wasp-writhe> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0176,
         edam:topic_0654,
         edam:topic_0736,
@@ -491190,16 +524208,39 @@ Writhe Analysis Software Package (WASP) WASP is a software package for character
     sc:name "WASP" ;
     sc:url "https://github.com/WereszczynskiGroup/WASP" .
 
+<https://bio.tools/wat3r> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Workflow" ;
+    sc:applicationSubCategory edam:topic_0769,
+        edam:topic_2830,
+        edam:topic_3170,
+        edam:topic_3308,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.1093/bioinformatics/btac382>,
+        "pubmed:35674381" ;
+    sc:description "Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq" ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3695,
+        edam:operation_3933 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "WAT3R" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/mainciburu/WAT3R" .
+
 <https://bio.tools/wataa> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0968" ;
-            sc:name "Keyword" ;
-            sc:sameAs "http://edamontology.org/data_0968" ] ;
+            sc:additionalType "http://edamontology.org/data_0968" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Keyword" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1537" ;
-            sc:name "Protein structure report" ;
-            sc:sameAs "http://edamontology.org/data_1537" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1537" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Protein structure report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_1317 ;
     sc:citation <https://doi.org/10.1039/c7cp00187h>,
@@ -491216,7 +524257,7 @@ Writhe Analysis Software Package (WASP) WASP is a software package for character
     biotools:primaryContact "JIri Cerny" .
 
 <https://bio.tools/watchdog> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "Workflow management system for the automated and distributed analysis of large-scale experimental data" ;
     sc:name "Watchdog" ;
     sc:softwareVersion "1.2.5-2.0.6" ;
@@ -491224,22 +524265,18 @@ Writhe Analysis Software Package (WASP) WASP is a software package for character
 
 <https://bio.tools/water> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0874" ;
-            sc:name "Comparison matrix" ;
-            sc:sameAs "http://edamontology.org/data_0874" ],
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ],
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
+            sc:additionalType "http://edamontology.org/data_0874" ;
+            sc:name "Comparison matrix" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1381" ;
-            sc:name "Sequence alignment (pair)" ;
-            sc:sameAs "http://edamontology.org/data_1381" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1381" ;
+            sc:name "Sequence alignment (pair)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0097 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -491270,23 +524307,22 @@ Writhe Analysis Software Package (WASP) WASP is a software package for character
 
 <https://bio.tools/water-ebi> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1381" ;
-            sc:name "Sequence alignment (pair)" ;
-            sc:sameAs "http://edamontology.org/data_1381" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1381" ;
+            sc:name "Sequence alignment (pair)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:author "EMBOSS",
-        "Web Production" ;
-    sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2> ;
+        "Job Dispatcher" ;
+    sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
+        <https://doi.org/10.1093/nar/gkac240> ;
     sc:description "Smith-Waterman local pairwise alignment of sequences." ;
     sc:featureList edam:operation_0491,
         edam:operation_0495 ;
-    sc:name "water (EBI)" ;
+    sc:name "Water (EBI)" ;
     sc:operatingSystem "Linux",
         "Mac",
         "Windows" ;
@@ -491295,10 +524331,10 @@ Writhe Analysis Software Package (WASP) WASP is a software package for character
         <http://www.ebi.ac.uk/about/terms-of-use> ;
     sc:softwareVersion "1" ;
     sc:url "http://www.ebi.ac.uk/Tools/psa/emboss_water/" ;
-    biotools:primaryContact "Web Production" .
+    biotools:primaryContact "Job Dispatcher Team" .
 
 <https://bio.tools/water_api-ebi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1016/0022-2836(81)90087-5> ;
@@ -491313,7 +524349,7 @@ Writhe Analysis Software Package (WASP) WASP is a software package for character
     sc:url "http://www.ebi.ac.uk/Tools/webservices/services/psa/emboss_water_rest" .
 
 <https://bio.tools/watermelon> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2269,
@@ -491337,7 +524373,7 @@ Writhe Analysis Software Package (WASP) WASP is a software package for character
     biotools:primaryContact <http://orcid.org/0000-0001-7030-5756> .
 
 <https://bio.tools/watsons_u2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_2269,
         edam:topic_3070,
@@ -491357,7 +524393,7 @@ Writhe Analysis Software Package (WASP) WASP is a software package for character
     biotools:primaryContact "Pierre Mégevand" .
 
 <https://bio.tools/wattos> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0593,
         edam:topic_1317,
@@ -491374,14 +524410,14 @@ Writhe Analysis Software Package (WASP) WASP is a software package for character
 
 <https://bio.tools/wavcluster> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3495" ;
-            sc:name "RNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3495" ] ;
+            sc:additionalType "http://edamontology.org/data_3495" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "RNA sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3495" ;
-            sc:name "RNA sequence" ;
-            sc:sameAs "http://edamontology.org/data_3495" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3495" ;
+            sc:encodingFormat "http://edamontology.org/format_2572" ;
+            sc:name "RNA sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0659,
@@ -491404,7 +524440,7 @@ Writhe Analysis Software Package (WASP) WASP is a software package for character
     biotools:primaryContact <http://orcid.org/0000-0002-8970-6610> .
 
 <https://bio.tools/wave-crest> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Library" ;
     sc:applicationSubCategory edam:topic_0099,
@@ -491423,7 +524459,7 @@ Writhe Analysis Software Package (WASP) WASP is a software package for character
     biotools:primaryContact "Li-Fang Chu" .
 
 <https://bio.tools/wavecnet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3382,
@@ -491440,7 +524476,7 @@ Writhe Analysis Software Package (WASP) WASP is a software package for character
     sc:url "https://github.com/CVI-SZU/WaveCNet" .
 
 <https://bio.tools/wavepropagator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2828,
         edam:topic_3365 ;
@@ -491459,7 +524495,7 @@ Writhe Analysis Software Package (WASP) WASP is a software package for character
     biotools:primaryContact "Alexei Buzmakov" .
 
 <https://bio.tools/waveqtl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3169,
@@ -491475,7 +524511,7 @@ Writhe Analysis Software Package (WASP) WASP is a software package for character
     sc:url "https://github.com/heejungshim/WaveQTL" .
 
 <https://bio.tools/waveread> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3053,
@@ -491491,7 +524527,7 @@ Writhe Analysis Software Package (WASP) WASP is a software package for character
     sc:url "http://bioinformatics.fccc.edu/software/OpenSource/waveread/index.shtml" .
 
 <https://bio.tools/waveseqr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_3169,
         edam:topic_3176,
@@ -491508,7 +524544,7 @@ Writhe Analysis Software Package (WASP) WASP is a software package for character
     sc:url "https://rdrr.io/rforge/WaveSeqR/" .
 
 <https://bio.tools/wavetiling> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -491531,7 +524567,7 @@ Writhe Analysis Software Package (WASP) WASP is a software package for character
     biotools:primaryContact "Kristof De Beuf" .
 
 <https://bio.tools/wavicgh> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0621,
@@ -491547,7 +524583,7 @@ Writhe Analysis Software Package (WASP) WASP is a software package for character
     sc:url "http://wavi.bioinfo.cnio.es" .
 
 <https://bio.tools/wavis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0154,
@@ -491568,7 +524604,7 @@ Writhe Analysis Software Package (WASP) WASP is a software package for character
     biotools:primaryContact "Webmaster" .
 
 <https://bio.tools/way2drug> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3172,
         edam:topic_3407 ;
@@ -491581,8 +524617,31 @@ Writhe Analysis Software Package (WASP) WASP is a software package for character
     sc:name "way2drug" ;
     sc:url "http://way2drug.com/mg2/" .
 
+<https://bio.tools/wbbc> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0625,
+        edam:topic_2885,
+        edam:topic_3056,
+        edam:topic_3337,
+        edam:topic_3673 ;
+    sc:citation <https://doi.org/10.1038/S41467-022-30526-X>,
+        "pmcid:PMC9135724",
+        "pubmed:35618720" ;
+    sc:description "The Westlake BioBank for Chinese (WBBC) cohort is a population-based prospective study with its major purpose to better understand the effect of genetic and environmental factors on growth and development from youngster to elderly." ;
+    sc:featureList edam:operation_0484,
+        edam:operation_3196,
+        edam:operation_3557,
+        edam:operation_3891 ;
+    sc:isAccessibleForFree true ;
+    sc:name "WBBC" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://wbbc.westlake.edu.cn/" .
+
 <https://bio.tools/wce-agdn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3384,
         edam:topic_3474 ;
@@ -491594,7 +524653,7 @@ Writhe Analysis Software Package (WASP) WASP is a software package for character
     sc:url "https://github.com/hathawayxxh/WCE-AGDN" .
 
 <https://bio.tools/wclique> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_3053 ;
@@ -491609,7 +524668,7 @@ Writhe Analysis Software Package (WASP) WASP is a software package for character
     sc:url "http://www.hpcf.upr.edu/~humberto/software/BPE/wclique/index.html" .
 
 <https://bio.tools/wcolite> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0089,
@@ -491625,7 +524684,7 @@ Writhe Analysis Software Package (WASP) WASP is a software package for character
     sc:url "https://wcolite.com/" .
 
 <https://bio.tools/wdac> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0736,
@@ -491648,7 +524707,7 @@ Writhe Analysis Software Package (WASP) WASP is a software package for character
     biotools:primaryContact "Byungwook Lee" .
 
 <https://bio.tools/wdcor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_3384,
         edam:topic_3444,
@@ -491665,7 +524724,7 @@ Writhe Analysis Software Package (WASP) WASP is a software package for character
     sc:url "https://github.com/yangyuhui0129/wdcor" .
 
 <https://bio.tools/wdl-rf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0128,
@@ -491682,7 +524741,7 @@ Writhe Analysis Software Package (WASP) WASP is a software package for character
     biotools:primaryContact "Support" .
 
 <https://bio.tools/weat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0634,
@@ -491700,7 +524759,7 @@ Writhe Analysis Software Package (WASP) WASP is a software package for character
     biotools:primaryContact "Qinghua Cui" .
 
 <https://bio.tools/weav> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0196,
@@ -491714,7 +524773,7 @@ Writhe Analysis Software Package (WASP) WASP is a software package for character
     sc:url "http://code.google.com/p/weav-assembler/" .
 
 <https://bio.tools/weaver> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0605 ;
@@ -491736,7 +524795,7 @@ documents.""" ;
     biotools:primaryContact "Seth Falcon" .
 
 <https://bio.tools/web-arm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0176,
         edam:topic_0623,
         edam:topic_3314,
@@ -491753,22 +524812,20 @@ documents.""" ;
 
 <https://bio.tools/web-beagle> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2526" ;
-            sc:name "Text data" ;
-            sc:sameAs "http://edamontology.org/data_2526" ] ;
+            sc:additionalType "http://edamontology.org/data_2526" ;
+            sc:encodingFormat "http://edamontology.org/format_2200" ;
+            sc:name "Text data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1394" ;
-            sc:name "Alignment score or penalty" ;
-            sc:sameAs "http://edamontology.org/data_1394" ],
+            sc:additionalType "http://edamontology.org/data_1394" ;
+            sc:name "Alignment score or penalty" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ],
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:name "Image" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2526" ;
-            sc:name "Text data" ;
-            sc:sameAs "http://edamontology.org/data_2526" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2526" ;
+            sc:encodingFormat "http://edamontology.org/format_2200" ;
+            sc:name "Text data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0082,
         edam:topic_0097,
@@ -491786,8 +524843,32 @@ documents.""" ;
     sc:url "http://beagle.bio.uniroma2.it/index.php" ;
     biotools:primaryContact "Eugenio Mattei" .
 
+<https://bio.tools/web-mcot> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_3494" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "DNA sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0160,
+        edam:topic_0166,
+        edam:topic_3169 ;
+    sc:citation <https://doi.org/10.3390/IJMS23168981>,
+        "pmcid:PMC9408884",
+        "pubmed:36012247" ;
+    sc:description "Web-MCOT Server for Motif Co-Occurrence Search in ChIP-Seq Data." ;
+    sc:featureList edam:operation_0238,
+        edam:operation_0239,
+        edam:operation_0445 ;
+    sc:isAccessibleForFree true ;
+    sc:name "Web-MCOT" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://webmcot.sysbio.cytogen.ru/" .
+
 <https://bio.tools/web-rMKL> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Web application",
         "Web service" ;
@@ -491813,7 +524894,7 @@ documents.""" ;
         "Nicolas Kersten" .
 
 <https://bio.tools/web-thermodyn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0097,
         edam:topic_0203,
@@ -491829,7 +524910,7 @@ documents.""" ;
     sc:url "http://www.gsa.buffalo.edu/dna/dk/WEBTHERMODYN/" .
 
 <https://bio.tools/web3dmol> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0166,
         edam:topic_3382 ;
@@ -491845,7 +524926,7 @@ documents.""" ;
     sc:url "http://web3dmol.duapp.com/" .
 
 <https://bio.tools/webRTC> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API",
         "Web application" ;
     sc:applicationSubCategory edam:topic_3384 ;
@@ -491862,7 +524943,7 @@ documents.""" ;
     sc:url "https://webrtc.org/" .
 
 <https://bio.tools/web_3dna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0082,
@@ -491885,7 +524966,7 @@ documents.""" ;
         "Prof. Olson" .
 
 <https://bio.tools/web_weeder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0654,
@@ -491905,7 +524986,7 @@ documents.""" ;
     biotools:primaryContact "Giulio Pavesi" .
 
 <https://bio.tools/webapollo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0622 ;
     sc:citation <https://doi.org/10.1186/gb-2013-14-8-r93> ;
@@ -491920,7 +525001,7 @@ documents.""" ;
     biotools:primaryContact "Suzanna E Lewis" .
 
 <https://bio.tools/webaugustus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0623,
         edam:topic_3512 ;
@@ -491943,7 +525024,7 @@ documents.""" ;
     biotools:primaryContact "Augustus-web team" .
 
 <https://bio.tools/webbioc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -491964,7 +525045,7 @@ documents.""" ;
     biotools:primaryContact "Colin A. Smith" .
 
 <https://bio.tools/webcmd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3334,
         edam:topic_3407,
@@ -491983,8 +525064,33 @@ documents.""" ;
     sc:url "http://www.webcmd.org/#!/" ;
     biotools:primaryContact "Support" .
 
+<https://bio.tools/webcsea> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1026" ;
+            sc:name "Gene symbol" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_0625,
+        edam:topic_0634,
+        edam:topic_3170,
+        edam:topic_3308 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAC392>,
+        "pubmed:35610053" ;
+    sc:description "WebCSEA (Web-based Cell-type Specific Enrichment Analysis of Genes) provides a gene set query among a systematic collection of tissue-cell-type expression signatures." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_0337,
+        edam:operation_3501 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "WebCSEA" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://bioinfo.uth.edu/webcsea/" .
+
 <https://bio.tools/webfeature> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0082,
@@ -492003,7 +525109,7 @@ documents.""" ;
     sc:url "http://feature.stanford.edu/webfeature/" .
 
 <https://bio.tools/webflags> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0114,
         edam:topic_0196,
         edam:topic_0621,
@@ -492021,7 +525127,7 @@ documents.""" ;
     sc:url "http://www.webflags.se/" .
 
 <https://bio.tools/webfr3d> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0082,
@@ -492044,7 +525150,7 @@ documents.""" ;
     biotools:primaryContact "Contact form" .
 
 <https://bio.tools/webgestalt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0203,
@@ -492072,7 +525178,7 @@ documents.""" ;
         "Zhiao Shi" .
 
 <https://bio.tools/webgester_db> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0203,
@@ -492093,7 +525199,7 @@ documents.""" ;
     biotools:primaryContact "Valakunja Nagaraja" .
 
 <https://bio.tools/webgivi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_3053,
@@ -492114,7 +525220,7 @@ documents.""" ;
     biotools:primaryContact "Liang Sun" .
 
 <https://bio.tools/webgmap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0102,
@@ -492131,7 +525237,7 @@ documents.""" ;
     sc:url "http://www.bioinfolab.org/software/webgmap" .
 
 <https://bio.tools/webikey> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web API" ;
     sc:applicationSubCategory edam:topic_0637,
         edam:topic_0780,
@@ -492149,7 +525255,7 @@ documents.""" ;
     biotools:primaryContact "Lakshmi Attigala" .
 
 <https://bio.tools/webinterviewer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0602 ;
@@ -492166,18 +525272,18 @@ documents.""" ;
 
 <https://bio.tools/webknossos> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ],
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Image" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3808" ;
-            sc:name "EM Micrograph" ;
-            sc:sameAs "http://edamontology.org/data_3808" ] ;
+            sc:additionalType "http://edamontology.org/data_3808" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "EM Micrograph" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Pathway or network" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0611,
@@ -492203,7 +525309,7 @@ Fly along neurons or create segmentations, all from your browser.""" ;
     sc:url "https://webknossos.org/" .
 
 <https://bio.tools/weblab> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0091,
@@ -492221,7 +525327,7 @@ Fly along neurons or create segmentations, all from your browser.""" ;
     biotools:primaryContact "WebLab Team" .
 
 <https://bio.tools/weblogo> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -492239,7 +525345,7 @@ Fly along neurons or create segmentations, all from your browser.""" ;
     sc:url "http://weblogo.berkeley.edu/" .
 
 <https://bio.tools/weblogo_3> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -492259,8 +525365,30 @@ Fly along neurons or create segmentations, all from your browser.""" ;
         <http://weblogo.threeplusone.com/manual.html> ;
     sc:url "http://weblogo.threeplusone.com" .
 
+<https://bio.tools/webmaboss> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0199,
+        edam:topic_0602,
+        edam:topic_2269 ;
+    sc:citation <https://doi.org/10.3389/FMOLB.2021.754444>,
+        "pmcid:PMC8651056",
+        "pubmed:34888352" ;
+    sc:description "A Web Interface for Simulating Boolean Models Stochastically." ;
+    sc:featureList edam:operation_0244,
+        edam:operation_2426,
+        edam:operation_3927 ;
+    sc:isAccessibleForFree true ;
+    sc:license "LGPL-3.0" ;
+    sc:name "WebMaBoSS" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://webmaboss.vincent-noel.fr" .
+
 <https://bio.tools/webmam> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0157,
@@ -492278,7 +525406,7 @@ Fly along neurons or create segmentations, all from your browser.""" ;
     biotools:primaryContact "Can Alkan" .
 
 <https://bio.tools/webmcp-counter> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2229,
         edam:topic_3308,
         edam:topic_3372 ;
@@ -492293,18 +525421,17 @@ Shiny app to run MCP-counter and mMCP-counter.""" ;
 
 <https://bio.tools/webmicroscope> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ],
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3591" ;
+            sc:name "Image" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3546" ;
-            sc:name "Image metadata" ;
-            sc:sameAs "http://edamontology.org/data_3546" ] ;
+            sc:additionalType "http://edamontology.org/data_3546" ;
+            sc:encodingFormat "http://edamontology.org/format_3591" ;
+            sc:name "Image metadata" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:name "Image" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_3382 ;
@@ -492325,7 +525452,7 @@ Shiny app to run MCP-counter and mMCP-counter.""" ;
     biotools:primaryContact "Johan Lundin" .
 
 <https://bio.tools/webmotifs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0203,
@@ -492350,34 +525477,34 @@ Shiny app to run MCP-counter and mMCP-counter.""" ;
 
 <https://bio.tools/webnma> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ],
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein structure" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1460" ;
-            sc:name "Protein structure" ;
-            sc:sameAs "http://edamontology.org/data_1460" ],
+            sc:additionalType "http://edamontology.org/data_0886" ;
+            sc:encodingFormat "http://edamontology.org/format_2200" ;
+            sc:name "Structure alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0886" ;
-            sc:name "Structure alignment" ;
-            sc:sameAs "http://edamontology.org/data_0886" ] ;
+            sc:additionalType "http://edamontology.org/data_1460" ;
+            sc:encodingFormat "http://edamontology.org/format_1476" ;
+            sc:name "Protein structure" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ],
+            sc:additionalType "http://edamontology.org/data_0889" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Structural profile" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0889" ;
-            sc:name "Structural profile" ;
-            sc:sameAs "http://edamontology.org/data_0889" ],
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3508" ;
+            sc:name "Plot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1354" ;
-            sc:name "Sequence profile" ;
-            sc:sameAs "http://edamontology.org/data_1354" ],
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3508" ;
+            sc:name "Plot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1354" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Sequence profile" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0736,
@@ -492411,7 +525538,7 @@ Shiny app to run MCP-counter and mMCP-counter.""" ;
     sc:url "http://apps.cbu.uib.no/webnma" .
 
 <https://bio.tools/webnma3> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0123,
         edam:topic_0176,
@@ -492429,7 +525556,7 @@ Shiny app to run MCP-counter and mMCP-counter.""" ;
     sc:url "http://apps.cbu.uib.no/webnma3/" .
 
 <https://bio.tools/webpipsa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0128,
@@ -492454,14 +525581,13 @@ Shiny app to run MCP-counter and mMCP-counter.""" ;
 
 <https://bio.tools/webprank> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:name "Sequence alignment" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:author "Ari Loytynoja",
@@ -492482,7 +525608,7 @@ Shiny app to run MCP-counter and mMCP-counter.""" ;
     biotools:primaryContact "Ari Loytynoja" .
 
 <https://bio.tools/webprc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0160,
@@ -492503,7 +525629,7 @@ Shiny app to run MCP-counter and mMCP-counter.""" ;
     biotools:primaryContact "Support" .
 
 <https://bio.tools/webprinses> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_3168 ;
@@ -492519,7 +525645,7 @@ Shiny app to run MCP-counter and mMCP-counter.""" ;
     sc:url "https://updeplasrv1.epfl.ch/prinses/" .
 
 <https://bio.tools/webproanalyst> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0130,
@@ -492541,7 +525667,7 @@ Shiny app to run MCP-counter and mMCP-counter.""" ;
     biotools:primaryContact "Dmitry Grigorovich" .
 
 <https://bio.tools/webpsn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0130,
         edam:topic_0154,
@@ -492561,7 +525687,7 @@ webPSN is a free web server for high throughput investigation of allosterism in
     sc:url "http://webpsn.hpc.unimore.it" .
 
 <https://bio.tools/websalvador> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_3382 ;
@@ -492575,7 +525701,7 @@ webPSN is a free web server for high throughput investigation of allosterism in
     biotools:primaryContact <https://orcid.org/0000-0003-3920-2059> .
 
 <https://bio.tools/websat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_2885,
@@ -492591,7 +525717,7 @@ webPSN is a free web server for high throughput investigation of allosterism in
     sc:url "http://wsmartins.net/websat/" .
 
 <https://bio.tools/webscipio> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0114,
         edam:topic_0621,
@@ -492615,8 +525741,39 @@ webPSN is a free web server for high throughput investigation of allosterism in
     sc:url "http://www.webscipio.org" ;
     biotools:primaryContact "Dr. Martin Kollmar" .
 
+<https://bio.tools/webscst> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2299" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Gene name" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_3112" ;
+            sc:encodingFormat "http://edamontology.org/format_3916" ;
+            sc:name "Gene expression matrix" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2892" ;
+            sc:name "Cell type name" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0621,
+        edam:topic_0769,
+        edam:topic_2229,
+        edam:topic_3170,
+        edam:topic_3308 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC350>,
+        "pubmed:35604082" ;
+    sc:description "An interactive web application for single-cell RNA-sequencing data and spatial transcriptomic data integration." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_3435 ;
+    sc:isAccessibleForFree true ;
+    sc:name "webSCST" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://www.webscst.com" .
+
 <https://bio.tools/websda> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0176,
@@ -492635,7 +525792,7 @@ webPSN is a free web server for high throughput investigation of allosterism in
     biotools:primaryContact "Support" .
 
 <https://bio.tools/webtraceminer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0160,
@@ -492651,8 +525808,55 @@ webPSN is a free web server for high throughput investigation of allosterism in
     sc:name "WebTraceMiner" ;
     sc:url "http://www.conifergdb.org/software/wtm1.2/" .
 
+<https://bio.tools/webtwas> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_0634,
+        edam:topic_0769,
+        edam:topic_3308,
+        edam:topic_3517 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAB957>,
+        "pmcid:PMC8728162",
+        "pubmed:34669946" ;
+    sc:description "The webTWAS integrates large number of GWAS summary level data for disease, and this number will be constantly increasing according to our timely curation. The webTWAS calculates the causal genes using single tissue expression imputation (MetaXcan and FUSION) or cross-tissue expression imputation (UTMOST) methods. Users can compare causal relations on gene-level and trait-level across studies of distinct sample size or population. In addition, users can upload their own GWAS summary statistic data and select the model to perform the customed TWAS analysis. Currently, we provide six models and the number of models will also be constantly increasing according to the development of TWAS research. The objective of this database is to ensure that its convenience and precision for researchers to select and prioritize causal genes for further study. In addition, our web could popularize TWAS in analysis by letting users easily applying TWAS tools online." ;
+    sc:featureList edam:operation_3196,
+        edam:operation_3501,
+        edam:operation_3557,
+        edam:operation_3659 ;
+    sc:isAccessibleForFree true ;
+    sc:name "webTWAS" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://www.webtwas.net" .
+
+<https://bio.tools/weconet> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0602,
+        edam:topic_0634,
+        edam:topic_0780,
+        edam:topic_2229,
+        edam:topic_3957 ;
+    sc:citation <https://doi.org/10.1186/S13007-022-00897-9>,
+        "pmcid:PMC9164323",
+        "pubmed:35658913" ;
+    sc:description "A host-pathogen interactome database for deciphering crucial molecular networks of wheat-common bunt cross-talk mechanisms." ;
+    sc:featureList edam:operation_2489,
+        edam:operation_2492,
+        edam:operation_3925 ;
+    sc:isAccessibleForFree true ;
+    sc:name "WeCoNET" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://bioinfo.usu.edu/weconet/" .
+
 <https://bio.tools/wecs-microgrid> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -492670,7 +525874,7 @@ webPSN is a free web server for high throughput investigation of allosterism in
     biotools:primaryContact "rasool alturfi" .
 
 <https://bio.tools/wedge> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3170,
@@ -492690,14 +525894,14 @@ webPSN is a free web server for high throughput investigation of allosterism in
 
 <https://bio.tools/weeder> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ] ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Nucleic acid sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2070" ;
-            sc:name "Sequence motif (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_2070" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2070" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Sequence motif (nucleic acid)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0160 ;
     sc:citation <https://doi.org/10.1002/0471250953.bi0211s47> ;
@@ -492716,14 +525920,12 @@ webPSN is a free web server for high throughput investigation of allosterism in
 
 <https://bio.tools/weederh> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ] ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:name "Nucleic acid sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2070" ;
-            sc:name "Sequence motif (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_2070" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2070" ;
+            sc:name "Sequence motif (nucleic acid)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0160 ;
     sc:citation <https://doi.org/10.1186/1471-2105-8-46> ;
@@ -492741,7 +525943,7 @@ webPSN is a free web server for high throughput investigation of allosterism in
         "Giulio Pavesi" .
 
 <https://bio.tools/weget> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203 ;
     sc:citation "pubmed:26582928" ;
@@ -492756,7 +525958,7 @@ webPSN is a free web server for high throughput investigation of allosterism in
     sc:url "http://weget.cmbi.umcn.nl/" .
 
 <https://bio.tools/wego> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0089 ;
     sc:citation "pubmed:16845012" ;
@@ -492774,7 +525976,7 @@ webPSN is a free web server for high throughput investigation of allosterism in
     biotools:primaryContact "WEGO Support" .
 
 <https://bio.tools/wei2go> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0089,
         edam:topic_1775 ;
@@ -492787,7 +525989,7 @@ webPSN is a free web server for high throughput investigation of allosterism in
     sc:url "https://gitlab.com/mreijnders/Wei2GO" .
 
 <https://bio.tools/weighbor> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0084,
@@ -492814,7 +526016,7 @@ webPSN is a free web server for high throughput investigation of allosterism in
         "W. Bruno" .
 
 <https://bio.tools/weighted-z-test> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2269 ;
     sc:citation <https://doi.org/10.1111/j.1420-9101.2011.02297.x>,
@@ -492831,7 +526033,7 @@ webPSN is a free web server for high throughput investigation of allosterism in
     biotools:primaryContact "Douglas Brubaker" .
 
 <https://bio.tools/weighted_fdr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0602,
@@ -492847,18 +526049,29 @@ webPSN is a free web server for high throughput investigation of allosterism in
     sc:softwareHelp <https://www.compgen.pitt.edu/fdr/Instructions.htm> ;
     sc:url "https://www.compgen.pitt.edu/fdr/" .
 
-<https://bio.tools/well-being_adolescents_spina_bifida_myelomeningocele> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3399,
-        edam:topic_3418,
-        edam:topic_3419 ;
-    sc:citation <https://doi.org/10.1080/09638288.2019.1647293>,
-        "pubmed:31368378" ;
-    sc:description "> HOMEPAGE MISSING! | > CORRECT NAME OF TOOL COULD ALSO BE 'well-being adolescents spina bifida', 'hindrances well-being adolescents spina bifida', 'adolescents spina bifida myelomeningocele', 'adolescents spina bifida' | South African adolescents living with spina bifida | Background: Spina bifida myelomeningocele is a major cause of disability among adolescents. However, little research is available in low-income nations such as South Africa. Investigating the contributors and hindrances to well-being in adolescents with spina bifida myelomeningocele may yield novel insights. In this study we included both adolescents and their primary caregivers to examine their perspectives on caring for and facilitating improvements in the life of the adolescents living with spina bifida myelomeningocele" ;
-    sc:name "well-being adolescents spina bifida myelomeningocele" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31368378" .
+<https://bio.tools/weka> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_3315,
+        edam:topic_3473,
+        edam:topic_3474,
+        edam:topic_3500 ;
+    sc:citation <https://doi.org/10.1093/JAS/SKAA278.081>,
+        "pmcid:PMC7702535" ;
+    sc:description "Weka is a collection of machine learning algorithms for data mining tasks. It contains tools for data preparation, classification, regression, clustering, association rules mining, and visualization." ;
+    sc:featureList edam:operation_2426,
+        edam:operation_3432,
+        edam:operation_3659 ;
+    sc:isAccessibleForFree true ;
+    sc:name "Weka" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareVersion "3" ;
+    sc:url "https://www.cs.waikato.ac.nz/ml/weka/" .
 
 <https://bio.tools/wellexplorer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0602,
         edam:topic_2840 ;
@@ -492875,7 +526088,7 @@ Exposure to hydraulic fracturing fluid in drinking water increases the risk of m
     sc:url "http://WellExplorer.org" .
 
 <https://bio.tools/wellmap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3519,
         edam:topic_3523,
@@ -492896,7 +526109,7 @@ Exposure to hydraulic fracturing fluid in drinking water increases the risk of m
     biotools:primaryContact <https://orcid.org/0000-0003-0051-5867> .
 
 <https://bio.tools/wemiq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_3170,
@@ -492911,7 +526124,7 @@ Exposure to hydraulic fracturing fluid in drinking water increases the risk of m
     sc:url "http://www-rcf.usc.edu/~liangche/software.html" .
 
 <https://bio.tools/wenda> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3295,
         edam:topic_3399,
         edam:topic_3474 ;
@@ -492927,7 +526140,7 @@ Exposure to hydraulic fracturing fluid in drinking water increases the risk of m
     sc:url "https://github.com/PfeiferLabTue/wenda" .
 
 <https://bio.tools/wenmr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0593,
         edam:topic_1317 ;
@@ -492945,7 +526158,7 @@ Exposure to hydraulic fracturing fluid in drinking water increases the risk of m
     sc:url "http://www.wenmr.eu/" .
 
 <https://bio.tools/wenmr_gromacs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0176 ;
     sc:citation <https://doi.org/10.1021/ct300102d> ;
@@ -492961,14 +526174,14 @@ Exposure to hydraulic fracturing fluid in drinking water increases the risk of m
 
 <https://bio.tools/wep> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1276" ;
-            sc:name "Nucleic acid features" ;
-            sc:sameAs "http://edamontology.org/data_1276" ] ;
+            sc:additionalType "http://edamontology.org/data_1276" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Nucleic acid features" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1276" ;
-            sc:name "Nucleic acid features" ;
-            sc:sameAs "http://edamontology.org/data_1276" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1276" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Nucleic acid features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:citation <https://doi.org/10.1186/1471-2105-14-S7-S11> ;
@@ -492986,7 +526199,7 @@ Exposure to hydraulic fracturing fluid in drinking water increases the risk of m
     biotools:primaryContact "Tiziana Castrignanò" .
 
 <https://bio.tools/wepy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0176,
         edam:topic_2269,
         edam:topic_3332 ;
@@ -493006,7 +526219,7 @@ The goal of the architecture is that it should be highly modular to allow extens
     sc:url "http://adicksonlab.github.io/wepy" .
 
 <https://bio.tools/wesa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0082 ;
     sc:citation <https://doi.org/10.1093/nar/gki633> ;
@@ -493020,7 +526233,7 @@ The goal of the architecture is that it should be highly modular to allow extens
     sc:url "http://pipe.scs.fsu.edu/wesa/" .
 
 <https://bio.tools/wescall> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0625,
         edam:topic_3337,
@@ -493038,7 +526251,7 @@ WEScall is a genotype calling pipeline for whole exome sequencing (WES) data. WE
     sc:url "https://github.com/dwuab/WEScall" .
 
 <https://bio.tools/wescover> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0622,
@@ -493058,7 +526271,7 @@ WEScall is a genotype calling pipeline for whole exome sequencing (WES) data. WE
     biotools:primaryContact <https://orcid.org/0000-0003-4877-7567> .
 
 <https://bio.tools/wfa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3168 ;
     sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAA777>,
@@ -493075,7 +526288,7 @@ homologous regions between the sequences to accelerate the alignment process. As
     sc:url "https://github.com/smarco/WFA" .
 
 <https://bio.tools/wft4galaxy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0607,
@@ -493093,16 +526306,16 @@ homologous regions between the sequences to accelerate the alignment process. As
     biotools:primaryContact "Marco Enrico Piras" .
 
 <https://bio.tools/wg-blimp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0769,
         edam:topic_3295,
         edam:topic_3673,
         edam:topic_3674 ;
-    sc:citation <https://doi.org/10.1101/859900> ;
-    sc:description """an end-to-end analysis pipeline for whole genome bisulfite sequencing data.
-
-wg-blimp (Whole Genome BisuLfIte sequencing Methylation analysis Pipeline) can be utilised to analyse WGBS data. It performs alignment, qc, methylation calling, DMR calling, segmentation and annotation using a multitude of tools. First time using wg-blimp? We recommend having a look at our step-by-step guide""" ;
+    sc:citation <https://doi.org/10.1186/s12859-020-3470-5>,
+        "pmcid:PMC7195798",
+        "pubmed:32357829" ;
+    sc:description "wg-blimp (Whole Genome BisuLfIte sequencing Methylation analysis Pipeline) can be utilised to analyse WGBS data. It performs alignment, qc, methylation calling, DMR calling, segmentation and annotation using a multitude of tools. First time using wg-blimp? We recommend having a look at our step-by-step guide" ;
     sc:featureList edam:operation_3186,
         edam:operation_3206,
         edam:operation_3218 ;
@@ -493111,7 +526324,7 @@ wg-blimp (Whole Genome BisuLfIte sequencing Methylation analysis Pipeline) can b
     sc:url "https://github.com/MarWoes/wg-blimp" .
 
 <https://bio.tools/wga-lp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0196,
@@ -493129,7 +526342,7 @@ wg-blimp (Whole Genome BisuLfIte sequencing Methylation analysis Pipeline) can b
     sc:url "https://github.com/redsnic/WGA-LP" .
 
 <https://bio.tools/wgaviewer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0654,
@@ -493146,7 +526359,7 @@ wg-blimp (Whole Genome BisuLfIte sequencing Methylation analysis Pipeline) can b
     sc:url "http://igm.cumc.columbia.edu/WGAViewer/" .
 
 <https://bio.tools/wgbssuite> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Suite" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3168,
@@ -493161,7 +526374,7 @@ wg-blimp (Whole Genome BisuLfIte sequencing Methylation analysis Pipeline) can b
     sc:url "http://www.wgbssuite.org.uk/" .
 
 <https://bio.tools/wgcna> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203 ;
     sc:citation <https://doi.org/10.1186/1471-2105-9-559>,
@@ -493176,7 +526389,7 @@ wg-blimp (Whole Genome BisuLfIte sequencing Methylation analysis Pipeline) can b
     sc:url "https://cran.r-project.org/web/packages/WGCNA/" .
 
 <https://bio.tools/wgd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0769,
         edam:topic_0780 ;
@@ -493200,7 +526413,7 @@ Python package and command line interface (CLI) for the analysis of whole-genome
     biotools:primaryContact <https://orcid.org/0000-0003-4327-3730> .
 
 <https://bio.tools/wgdi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_3175,
@@ -493222,7 +526435,7 @@ Python package and command line interface (CLI) for the analysis of whole-genome
         "Zhenxiang Xi" .
 
 <https://bio.tools/wge> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0654,
@@ -493241,7 +526454,7 @@ Python package and command line interface (CLI) for the analysis of whole-genome
     biotools:primaryContact "Support" .
 
 <https://bio.tools/wglink> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0203,
         edam:topic_0622,
@@ -493257,8 +526470,31 @@ WgLink is a novel tool using regularized regression to stitch together regional
     sc:name "WgLink" ;
     sc:url "https://github.com/theLongLab/wglink" .
 
+<https://bio.tools/wgnn-dta> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Script" ;
+    sc:applicationSubCategory edam:topic_0154,
+        edam:topic_2275,
+        edam:topic_3373,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1186/S12864-022-08648-9>,
+        "pmcid:PMC9205061",
+        "pubmed:35715739" ;
+    sc:description "Sequence-based drug-target affinity prediction using weighted graph neural networks." ;
+    sc:featureList edam:operation_0272,
+        edam:operation_0474,
+        edam:operation_3092,
+        edam:operation_3938 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "WGNN-DTA" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/595693085/WGNN-DTA" .
+
 <https://bio.tools/wgs-structvar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0091 ;
     sc:citation <https://doi.org/10.1038/ejhg.2017.130> ;
@@ -493273,7 +526509,7 @@ WgLink is a novel tool using regularized regression to stitch together regional
     biotools:primaryContact "Björn Nystedt" .
 
 <https://bio.tools/wgsim> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description """Wgsim is a small tool for simulating sequence reads from a reference genome.
 It is able to simulate diploid genomes with SNPs and insertion/deletion (INDEL)
 polymorphisms, and simulate reads with uniform substitution sequencing errors.
@@ -493288,7 +526524,7 @@ that comes with the package.""" ;
     sc:url "https://github.com/lh3/wgsim" .
 
 <https://bio.tools/wham> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1145/2389241.2389247> ;
@@ -493302,7 +526538,7 @@ that comes with the package.""" ;
     biotools:primaryContact "Yinan Li" .
 
 <https://bio.tools/wham-variants> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0622,
@@ -493322,7 +526558,7 @@ that comes with the package.""" ;
     sc:url "http://zeeev.github.io/wham/" .
 
 <https://bio.tools/whamm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3517 ;
     sc:description "Designed for the calculation and association testing of stretches of homozygosity in genome-wide association data, as well as calculation of the intergrated haplotype score (iHS). Note that this tool is currently unpublished, and many of the website links are not fully updated." ;
@@ -493335,7 +526571,7 @@ that comes with the package.""" ;
     sc:url "http://coruscant.itmat.upenn.edu/whamm/index.html" .
 
 <https://bio.tools/what-if> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0632,
         edam:topic_3474 ;
@@ -493346,7 +526582,7 @@ that comes with the package.""" ;
     sc:url "https://pair-code.github.io/what-if-tool/" .
 
 <https://bio.tools/what_check> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_1317,
         edam:topic_2814 ;
@@ -493361,7 +526597,7 @@ that comes with the package.""" ;
     sc:url "http://swift.cmbi.ru.nl/gv/whatcheck/" .
 
 <https://bio.tools/what_if> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0081,
@@ -493383,7 +526619,7 @@ that comes with the package.""" ;
     biotools:primaryContact "Gert Vriend" .
 
 <https://bio.tools/whatif> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2275 ;
     sc:citation <https://doi.org/10.1016/0263-7855(90)80070-V> ;
@@ -493397,16 +526633,20 @@ that comes with the package.""" ;
     sc:softwareVersion "1" ;
     sc:url "http://swift.cmbi.ru.nl/whatif/" .
 
+<https://bio.tools/whatismygene> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:description "Web-based gene enrichment tools based on a huge underlying database of transcriptomic, proteomic (and other-omic) studies." ;
+    sc:name "Whatismygene" ;
+    sc:url "https://whatismygene.com" .
+
 <https://bio.tools/whatizit> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:name "Report" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0972" ;
-            sc:name "Text mining report" ;
-            sc:sameAs "http://edamontology.org/data_0972" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0972" ;
+            sc:name "Text mining report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0218,
         edam:topic_3473 ;
@@ -493430,7 +526670,7 @@ that comes with the package.""" ;
     biotools:primaryContact "Jee-Hyub Kim" .
 
 <https://bio.tools/whatsgnu> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0121,
         edam:topic_0199 ;
@@ -493447,7 +526687,7 @@ WhatsGNU utilizes the natural variation in public databases to rank protein sequ
     sc:url "https://github.com/ahmedmagds/WhatsGNU" .
 
 <https://bio.tools/whatshap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_2885 ;
@@ -493464,8 +526704,32 @@ WhatsGNU utilizes the natural variation in public databases to rank protein sequ
     sc:softwareVersion "0.13" ;
     sc:url "http://whatshap.readthedocs.io" .
 
+<https://bio.tools/whc> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0622,
+        edam:topic_2269,
+        edam:topic_3517,
+        edam:topic_3676 ;
+    sc:citation <https://doi.org/10.1093/BIB/BBAB472>,
+        "pubmed:34849577" ;
+    sc:description "Focused goodness of fit tests for gene set analyses." ;
+    sc:featureList edam:operation_2436,
+        edam:operation_3196,
+        edam:operation_3435,
+        edam:operation_3659,
+        edam:operation_3891 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "wHC" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/mqzhanglab/wHC" .
+
 <https://bio.tools/wheat_genome> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_3070 ;
     sc:citation <https://doi.org/10.1093/pcp/pcr141> ;
@@ -493481,7 +526745,7 @@ WhatsGNU utilizes the natural variation in public databases to rank protein sequ
     biotools:primaryContact "Australia" .
 
 <https://bio.tools/wheat_zapper> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0654,
@@ -493497,8 +526761,43 @@ WhatsGNU utilizes the natural variation in public databases to rank protein sequ
     sc:softwareHelp <http://wge.ndsu.nodak.edu/wheatzapper/Help.htm> ;
     sc:url "http://wge.ndsu.nodak.edu/wheatzapper/" .
 
+<https://bio.tools/wheatcenet> a sc:SoftwareApplication ;
+    bsc:input [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1176" ;
+            sc:name "GO concept ID" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2757" ;
+            sc:name "Pfam domain name" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:name "Sequence" ],
+        [ a bsct:FormalParameter ;
+            sc:additionalType "http://edamontology.org/data_1893" ;
+            sc:name "Locus ID" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0602,
+        edam:topic_0659,
+        edam:topic_0749,
+        edam:topic_3173,
+        edam:topic_3308 ;
+    sc:citation <https://doi.org/10.1016/J.GPB.2022.04.007>,
+        "pubmed:35660007" ;
+    sc:description "A database for comparative co-expression networks analysis of allohexaploid wheat and its progenitors." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_2436,
+        edam:operation_3463,
+        edam:operation_3927 ;
+    sc:isAccessibleForFree true ;
+    sc:name "WheatCENet" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://bioinformatics.cau.edu.cn/WheatCENet" .
+
 <https://bio.tools/wheatqtldb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
@@ -493522,7 +526821,7 @@ WhatsGNU utilizes the natural variation in public databases to rank protein sequ
     sc:url "http://www.wheatqtldb.net" .
 
 <https://bio.tools/wheelcon> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2815,
         edam:topic_3304 ;
     sc:citation <https://doi.org/10.3791/61092>,
@@ -493536,7 +526835,7 @@ Feedback control theory has been extensively implemented to theoretically model
     sc:url "https://github.com/Doyle-Lab/WheelCon" .
 
 <https://bio.tools/whets> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0114,
         edam:topic_0154,
@@ -493553,7 +526852,7 @@ Feedback control theory has been extensively implemented to theoretically model
     sc:url "http://www.rothamsted.ac.uk/whets/" .
 
 <https://bio.tools/whichcyp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_3336,
@@ -493571,10 +526870,9 @@ Feedback control theory has been extensively implemented to theoretically model
 
 <https://bio.tools/whichdb> a sc:SoftwareApplication ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0957" ;
-            sc:name "Database metadata" ;
-            sc:sameAs "http://edamontology.org/data_0957" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0957" ;
+            sc:name "Database metadata" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3077 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -493604,7 +526902,7 @@ Feedback control theory has been extensively implemented to theoretically model
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/whichdb.html" .
 
 <https://bio.tools/whichgenes> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3053,
         edam:topic_3500 ;
@@ -493623,7 +526921,7 @@ Feedback control theory has been extensively implemented to theoretically model
         "Florentino Fernández Riverola" .
 
 <https://bio.tools/whistle> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0659,
@@ -493642,7 +526940,7 @@ Feedback control theory has been extensively implemented to theoretically model
     biotools:primaryContact "Kunqi Chen" .
 
 <https://bio.tools/whiteboard> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0091,
@@ -493658,7 +526956,7 @@ Feedback control theory has been extensively implemented to theoretically model
     sc:url "http://whiteboard-class.sourceforge.net/" .
 
 <https://bio.tools/who-covid-19-dashboard> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0634,
@@ -493671,18 +526969,48 @@ Feedback control theory has been extensively implemented to theoretically model
     sc:url "https://covid19.who.int" ;
     biotools:primaryContact "Muhammad Irfan" .
 
-<https://bio.tools/whole_genome_bisulfite_sequencing_wgbs> a sc:SoftwareApplication ;
-    sc:description "As a leading provider of NGS services, CD Genomics is providing an integrated portfolio of methylation sequencing services. Whole genome bisulfite sequencing (WGBS) is an effective and reliable strategy to identify individually methylated cytosines on a genome-wide scale. With over 10 years of experience and the state-of-the-art next-generation sequencing platforms, we can totally meet your project requirements and budgets in the exploration of methylome." ;
-    sc:name "Whole Genome Bisulfite Sequencing (WGBS)" ;
-    sc:url "https://www.cd-genomics.com/Whole-Genome-Bisulfite-Sequencing.html" .
+<https://bio.tools/whocares> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_2815,
+        edam:topic_3300,
+        edam:topic_3444 ;
+    sc:citation <https://doi.org/10.1088/1741-2552/AC8BFF>,
+        "pubmed:35998568" ;
+    sc:description "WHOle-brain CArdiac signal REgression from highly accelerated simultaneous multi-Slice fMRI acquisitions." ;
+    sc:featureList edam:operation_2422,
+        edam:operation_3443,
+        edam:operation_3659 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "WHOCARES" ;
+    sc:operatingSystem "Linux" ;
+    sc:url "https://github.com/gferrazzi/WHOCARES" .
 
-<https://bio.tools/whole_genome_snp_genotyping> a sc:SoftwareApplication ;
-    sc:description "CD Genomics provides whole-genome SNP genotyping for the overview of the entire genome by using both microarray technologies and high-throughput next-generation sequencing (NGS), enabling genome-wide discoveries and screening of the SNP loci. Genome-wide association studies with SNP markers are expected to allow identification of genetic variation that underlie complex disorders." ;
-    sc:name "Whole Genome SNP Genotyping" ;
-    sc:url "https://www.cd-genomics.com/Whole-Genome-SNP-Genotyping.html" .
+<https://bio.tools/whokaryote> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0114,
+        edam:topic_0621,
+        edam:topic_0780,
+        edam:topic_3174,
+        edam:topic_3500 ;
+    sc:citation <https://doi.org/10.1101/2021.11.15.468626> ;
+    sc:description "Distinguishing eukaryotic and prokaryotic contigs in metagenomes based on gene structure." ;
+    sc:featureList edam:operation_0310,
+        edam:operation_2454,
+        edam:operation_3460,
+        edam:operation_3472 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "Whokaryote" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://git.wageningenur.nl/lotte.pronk/whokaryote" .
 
 <https://bio.tools/whondrs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_3172,
         edam:topic_3174,
@@ -493698,7 +527026,7 @@ Feedback control theory has been extensively implemented to theoretically model
     sc:url "https://xmlin.shinyapps.io/whondrs/" .
 
 <https://bio.tools/whopgenome> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1093/bioinformatics/btu636>,
@@ -493718,7 +527046,7 @@ Feedback control theory has been extensively implemented to theoretically model
     biotools:primaryContact "Ulrich Wittelsbuerger" .
 
 <https://bio.tools/wiad> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0610,
         edam:topic_3382 ;
     sc:citation <https://doi.org/10.1101/2020.12.16.423133> ;
@@ -493735,7 +527063,7 @@ WIAD presents a dynamic interface for a wide range of scientists in archeology,
     sc:url "http://wiad.science" .
 
 <https://bio.tools/widgettools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0605,
@@ -493757,7 +527085,7 @@ Tcl/Tk commands, because the widget functionality is encapsulated in S4 classes
     biotools:primaryContact "Jianhua Zhang" .
 
 <https://bio.tools/wifa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654 ;
     sc:citation <https://doi.org/10.1186/1471-2105-12-146> ;
@@ -493772,14 +527100,14 @@ Tcl/Tk commands, because the widget functionality is encapsulated in S4 classes
 
 <https://bio.tools/wiff2dta> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3710" ;
+            sc:name "Mass spectrometry spectra" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3652" ;
+            sc:name "Mass spectrometry spectra" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -493795,14 +527123,14 @@ Tcl/Tk commands, because the widget functionality is encapsulated in S4 classes
 
 <https://bio.tools/wiggleplotr> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3496" ;
-            sc:name "RNA sequence (raw)" ;
-            sc:sameAs "http://edamontology.org/data_3496" ] ;
+            sc:additionalType "http://edamontology.org/data_3496" ;
+            sc:encodingFormat "http://edamontology.org/format_3006" ;
+            sc:name "RNA sequence (raw)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2166" ;
-            sc:name "Sequence composition plot" ;
-            sc:sameAs "http://edamontology.org/data_2166" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2166" ;
+            sc:encodingFormat "http://edamontology.org/format_3617" ;
+            sc:name "Sequence composition plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0092,
@@ -493824,7 +527152,7 @@ Tcl/Tk commands, because the widget functionality is encapsulated in S4 classes
     biotools:primaryContact "Kaur Alasoo" .
 
 <https://bio.tools/wiggler> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3169 ;
@@ -493838,7 +527166,7 @@ Tcl/Tk commands, because the widget functionality is encapsulated in S4 classes
     sc:url "https://sites.google.com/site/anshulkundaje/projects/wiggler" .
 
 <https://bio.tools/wigwams> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0204 ;
@@ -493852,7 +527180,7 @@ Tcl/Tk commands, because the widget functionality is encapsulated in S4 classes
     sc:url "http://cyverseuk.org/applications/wigwams/" .
 
 <https://bio.tools/wikidata> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0749,
         edam:topic_2229,
@@ -493869,7 +527197,7 @@ Tcl/Tk commands, because the widget functionality is encapsulated in S4 classes
     sc:url "https://www.wikidata.org" .
 
 <https://bio.tools/wikigene> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0204,
@@ -493886,23 +527214,46 @@ Tcl/Tk commands, because the widget functionality is encapsulated in S4 classes
     sc:name "WikiGene" ;
     sc:url "http://andromeda.gsf.de/wiki" .
 
+<https://bio.tools/wikinetworks> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0091,
+        edam:topic_0108,
+        edam:topic_0602 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAB699>,
+        "pmcid:PMC8756176",
+        "pubmed:34636843" ;
+    sc:description "WikiNetworks is a user-friendly Python package to process pathways from the WikiPathways database into machine-readable network representations." ;
+    sc:featureList edam:operation_0224,
+        edam:operation_3927,
+        edam:operation_3928 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "WikiNetworks" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://github.com/Thakar-Lab/WikiNetworks/tree/main/Tutorials> ;
+    sc:url "http://github.com/Thakar-Lab/wikinetworks" .
+
 <https://bio.tools/wikipathways> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0842" ;
-            sc:name "Identifier" ;
-            sc:sameAs "http://edamontology.org/data_0842" ] ;
+            sc:additionalType "http://edamontology.org/data_0842" ;
+            sc:name "Identifier" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web API",
         "Web application",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3325 ;
-    sc:citation <https://doi.org/10.1093/nar/gkv1024>,
+    sc:citation <https://doi.org/10.1093/NAR/GKAA1024>,
+        <https://doi.org/10.1093/NAR/GKX1064>,
+        <https://doi.org/10.1093/nar/gkv1024>,
         <https://doi.org/10.1371/journal.pone.0006447> ;
     sc:description "WikiPathways is a database of biological pathways maintained by and for the scientific community." ;
     sc:featureList edam:operation_2422,
@@ -493920,7 +527271,7 @@ Tcl/Tk commands, because the widget functionality is encapsulated in S4 classes
         "Martina Kutmon" .
 
 <https://bio.tools/wikipathways_app> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_3325 ;
@@ -493944,7 +527295,7 @@ Tcl/Tk commands, because the widget functionality is encapsulated in S4 classes
     biotools:primaryContact <http://orcid.org/0000-0002-7699-8191> .
 
 <https://bio.tools/wilcoxon-rank-sum-test-boxplots-genes-compounds-healthy-disease> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2269,
@@ -493963,7 +527314,7 @@ Tcl/Tk commands, because the widget functionality is encapsulated in S4 classes
     biotools:primaryContact "Dr. Soumya Banerjee" .
 
 <https://bio.tools/wilsongen> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3053,
         edam:topic_3068,
@@ -493983,7 +527334,7 @@ WilsonGen is a comprehensive resource of genetic variants in ATP7B gene manually
     sc:url "http://clingen.igib.res.in/WilsonGen/" .
 
 <https://bio.tools/winbest-kit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2259,
         edam:topic_3292,
@@ -493997,7 +527348,7 @@ WilsonGen is a comprehensive resource of genetic variants in ATP7B gene manually
     sc:url "http://winbest-kit.org/" .
 
 <https://bio.tools/winbioinftools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0091 ;
     sc:citation <https://doi.org/10.1109/CLUSTR.2009.5289141> ;
@@ -494012,7 +527363,7 @@ WilsonGen is a comprehensive resource of genetic variants in ATP7B gene manually
     sc:url "http://winbioinftools.codeplex.com/" .
 
 <https://bio.tools/wincoot> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_1317,
         edam:topic_2828 ;
@@ -494031,7 +527382,7 @@ WilsonGen is a comprehensive resource of genetic variants in ATP7B gene manually
     sc:url "http://www.ysbl.york.ac.uk/~lohkamp/coot/wincoot.html" .
 
 <https://bio.tools/windowmasker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3168 ;
     sc:description "windowmasker identifies and masks highly repetitive DNA sequences in a genome, using only the sequence of the genome itself." ;
@@ -494045,7 +527396,7 @@ WilsonGen is a comprehensive resource of genetic variants in ATP7B gene manually
     sc:url "http://nebc.nox.ac.uk/bioinformatics/docs/windowmasker.html" .
 
 <https://bio.tools/wingmesh> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3382,
         edam:topic_3569,
         edam:topic_3570 ;
@@ -494061,7 +527412,7 @@ Manual modeling of complicated insect wings presents considerable practical chal
     sc:url "https://wingquest.org/wingmesh/" .
 
 <https://bio.tools/winhap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3053 ;
@@ -494074,8 +527425,21 @@ Manual modeling of complicated insect wings presents considerable practical chal
     sc:softwareVersion "2.0" ;
     sc:url "http://staff.ustc.edu.cn/~xuyun/winhap/WinHAP2.0.htm" .
 
+<https://bio.tools/winnowmap> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0102 ;
+    sc:citation <https://doi.org/10.1038/s41592-022-01457-8>,
+        <https://doi.org/10.1093/bioinformatics/btaa435> ;
+    sc:description "Winnowmap is a long-read mapping algorithm optimized for mapping ONT and PacBio reads to repetitive reference sequences. Winnowmap development began on top of minimap2 codebase, and since then we have incorporated the following two ideas to improve mapping accuracy within repeats" ;
+    sc:featureList edam:operation_0292 ;
+    sc:license "Not licensed" ;
+    sc:name "winnowmap" ;
+    sc:softwareVersion "2.03" ;
+    sc:url "https://github.com/marbl/Winnowmap" .
+
 <https://bio.tools/winrop> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3379,
         edam:topic_3418 ;
     sc:citation <https://doi.org/10.2147/OPTH.S247820>,
@@ -494088,7 +527452,7 @@ This online monitoring system, following weight gain, for predicting developing
     sc:url "http://winrop.com" .
 
 <https://bio.tools/winsaam> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_2259,
@@ -494102,7 +527466,7 @@ This online monitoring system, following weight gain, for predicting developing
     sc:url "http://www.winsaam.org/" .
 
 <https://bio.tools/wintf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0204,
         edam:topic_0749,
@@ -494121,7 +527485,7 @@ Weighted, Imputed, Neighbor-regularized matrix TriFactorization, WINTF.""" ;
     sc:url "https://github.com/XieResearchGroup/WINTF" .
 
 <https://bio.tools/wisard> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0654,
         edam:topic_3391 ;
@@ -494135,7 +527499,7 @@ Weighted, Imputed, Neighbor-regularized matrix TriFactorization, WINTF.""" ;
     sc:url "http://statgen.snu.ac.kr/wisard/" .
 
 <https://bio.tools/wise> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0654 ;
@@ -494154,18 +527518,15 @@ Weighted, Imputed, Neighbor-regularized matrix TriFactorization, WINTF.""" ;
 
 <https://bio.tools/wise2dba> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2977" ;
-            sc:name "Nucleic acid sequence" ;
-            sc:sameAs "http://edamontology.org/data_2977" ] ;
+            sc:additionalType "http://edamontology.org/data_2977" ;
+            sc:name "Nucleic acid sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1381" ;
-            sc:name "Sequence alignment (pair)" ;
-            sc:sameAs "http://edamontology.org/data_1381" ],
+            sc:additionalType "http://edamontology.org/data_1381" ;
+            sc:name "Sequence alignment (pair)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1383" ;
-            sc:name "Sequence alignment (nucleic acid)" ;
-            sc:sameAs "http://edamontology.org/data_1383" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1383" ;
+            sc:name "Sequence alignment (nucleic acid)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:author "Ewan Birney",
@@ -494186,7 +527547,7 @@ Weighted, Imputed, Neighbor-regularized matrix TriFactorization, WINTF.""" ;
     biotools:primaryContact "Web Production" .
 
 <https://bio.tools/wish-r> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0634,
@@ -494209,7 +527570,7 @@ Weighted, Imputed, Neighbor-regularized matrix TriFactorization, WINTF.""" ;
     biotools:primaryContact "Haja N. Kadarmideen" .
 
 <https://bio.tools/wit-input-output> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -494226,21 +527587,8 @@ Weighted, Imputed, Neighbor-regularized matrix TriFactorization, WINTF.""" ;
     sc:url "https://www.mathworks.com/matlabcentral/fileexchange/71956-wit-input-output" ;
     biotools:primaryContact "J. T. Holmi" .
 
-<https://bio.tools/withdrawal> a sc:SoftwareApplication ;
-    sc:citation <https://doi.org/10.1111/1556-4029.14248>,
-        "pubmed:31860131" ;
-    sc:description """the critical role of hair growth rate. J Forensic Sci 2019;54(5):1574-5 (https://doi.org/10.1111/1556-4029.14013).
-
-The following article from the Journal of Forensic Science, "Hair Analysis for Drug-Facilitated Crime: The Critical Role of Hair Growth Rate" by Koren G, Bellaish E, Maman K, published online on 3rd September 2019 (1) on Wiley Online Library has been withdrawn at the authors' request, and in agreement between the authors, the Journal's Editorial Office, and John Wiley & Sons, Inc. The withdrawal has been agreed to by all parties due to material included in the article being involved in current litigation. Reference 1. Koren G, Bellaish E, Maman K. Hair analysis for drug-facilitated crime: the critical role of hair growth rate. J Forensic Sci 2019;54(5):1574-5. https: doi.org 10.1111 1556-4029.14013.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'drug-facilitated crime', 'drug-facilitated', 'Bellaish', '2019;54(5):1574-5'""" ;
-    sc:name "withdrawal" ;
-    sc:url "https://www.ncbi.nlm.nih.gov/pubmed/?term=31860131" .
-
 <https://bio.tools/witio> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -494257,7 +527605,7 @@ The following article from the Journal of Forensic Science, "Hair Analysis for D
     biotools:primaryContact "J. T. Holmi" .
 
 <https://bio.tools/wiws> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0081,
@@ -494280,7 +527628,7 @@ The following article from the Journal of Forensic Science, "Hair Analysis for D
     biotools:primaryContact "Gert Vriend" .
 
 <https://bio.tools/wiz> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_3382,
         edam:topic_3474 ;
@@ -494301,7 +527649,7 @@ Wiz is a convienient tool for interactively plotting data. Wiz allows users to q
     sc:url "https://wiz.shef.ac.uk" .
 
 <https://bio.tools/wkinmut> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0622,
@@ -494317,7 +527665,7 @@ Wiz is a convienient tool for interactively plotting data. Wiz allows users to q
     sc:url "http://kinmut2.bioinfo.cnio.es/KinMut2" .
 
 <https://bio.tools/wkl> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_0781,
@@ -494331,7 +527679,7 @@ Wiz is a convienient tool for interactively plotting data. Wiz allows users to q
     sc:url "http://www.gis.a-star.edu.sg/pathchip/WKL_readme.txt" .
 
 <https://bio.tools/wlake> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0082,
@@ -494347,7 +527695,7 @@ Wiz is a convienient tool for interactively plotting data. Wiz allows users to q
     sc:url "http://mouse.belozersky.msu.ru/~evgeniy/cgi-bin/wLake/wLake.php" .
 
 <https://bio.tools/wmap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0654,
@@ -494363,7 +527711,7 @@ Wiz is a convienient tool for interactively plotting data. Wiz allows users to q
     sc:url "http://systemsbio.ucsd.edu/wmap/manual.html" .
 
 <https://bio.tools/wmaxc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0634,
@@ -494379,7 +527727,7 @@ Wiz is a convienient tool for interactively plotting data. Wiz allows users to q
     sc:url "http://combio.gist.ac.kr/WMAXC/WMAXC.html" .
 
 <https://bio.tools/wmfvs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0203,
@@ -494398,7 +527746,7 @@ Wiz is a convienient tool for interactively plotting data. Wiz allows users to q
     biotools:primaryContact <https://orcid.org/0000-0001-9763-797X> .
 
 <https://bio.tools/wnv_typer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0625,
         edam:topic_0654,
@@ -494416,14 +527764,12 @@ Wiz is a convienient tool for interactively plotting data. Wiz allows users to q
 
 <https://bio.tools/wobble> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2887" ;
-            sc:name "Nucleic acid sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2887" ] ;
+            sc:additionalType "http://edamontology.org/data_2887" ;
+            sc:name "Nucleic acid sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1261" ;
-            sc:name "Sequence composition report" ;
-            sc:sameAs "http://edamontology.org/data_1261" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1261" ;
+            sc:name "Sequence composition report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3053 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -494453,7 +527799,7 @@ Wiz is a convienient tool for interactively plotting data. Wiz allows users to q
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/wobble.html" .
 
 <https://bio.tools/wolf_psort> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -494473,7 +527819,7 @@ Wiz is a convienient tool for interactively plotting data. Wiz allows users to q
     biotools:primaryContact "Kenta Nakai" .
 
 <https://bio.tools/wombat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3055 ;
     sc:citation <https://doi.org/10.1631/jzus.2007.B0815>,
@@ -494491,7 +527837,7 @@ Wiz is a convienient tool for interactively plotting data. Wiz allows users to q
     biotools:primaryContact <http://orcid.org/0000-0003-2663-9059> .
 
 <https://bio.tools/wonka> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0128,
@@ -494511,10 +527857,10 @@ Wiz is a convienient tool for interactively plotting data. Wiz allows users to q
 
 <https://bio.tools/wopper> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0928" ;
-            sc:name "Gene expression profile" ;
-            sc:sameAs "http://edamontology.org/data_0928" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0928" ;
+            sc:encodingFormat "http://edamontology.org/format_3003" ;
+            sc:name "Gene expression profile" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3511 ;
@@ -494531,7 +527877,7 @@ Wiz is a convienient tool for interactively plotting data. Wiz allows users to q
     biotools:primaryContact "Flavio Licciulli" .
 
 <https://bio.tools/worcs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workflow" ;
     sc:applicationSubCategory edam:topic_0769 ;
     sc:citation <https://doi.org/10.3233/DS-210031> ;
@@ -494542,7 +527888,7 @@ Wiz is a convienient tool for interactively plotting data. Wiz allows users to q
     biotools:primaryContact <https://orcid.org/0000-0002-0808-5024> .
 
 <https://bio.tools/wordcluster> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654,
@@ -494559,14 +527905,12 @@ Wiz is a convienient tool for interactively plotting data. Wiz allows users to q
 
 <https://bio.tools/wordcount> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1261" ;
-            sc:name "Sequence composition report" ;
-            sc:sameAs "http://edamontology.org/data_1261" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1261" ;
+            sc:name "Sequence composition report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0157 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -494597,22 +527941,18 @@ Wiz is a convienient tool for interactively plotting data. Wiz allows users to q
 
 <https://bio.tools/wordfinder> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ],
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ],
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0874" ;
-            sc:name "Comparison matrix" ;
-            sc:sameAs "http://edamontology.org/data_0874" ] ;
+            sc:additionalType "http://edamontology.org/data_0874" ;
+            sc:name "Comparison matrix" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1381" ;
-            sc:name "Sequence alignment (pair)" ;
-            sc:sameAs "http://edamontology.org/data_1381" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1381" ;
+            sc:name "Sequence alignment (pair)" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0097 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -494644,26 +527984,21 @@ Wiz is a convienient tool for interactively plotting data. Wiz allows users to q
 
 <https://bio.tools/wordmatch> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ],
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ],
+            sc:additionalType "http://edamontology.org/data_1381" ;
+            sc:name "Sequence alignment (pair)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1381" ;
-            sc:name "Sequence alignment (pair)" ;
-            sc:sameAs "http://edamontology.org/data_1381" ],
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:name "Sequence features" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1255" ;
-            sc:name "Sequence features" ;
-            sc:sameAs "http://edamontology.org/data_1255" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1255" ;
+            sc:name "Sequence features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0097 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -494693,7 +528028,7 @@ Wiz is a convienient tool for interactively plotting data. Wiz allows users to q
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/wordmatch.html" .
 
 <https://bio.tools/wordmatch_ws_husar> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:description "Finds all exact matches of a given minimum size between 2 sequences displaying the start points in each sequence and the match length." ;
@@ -494704,7 +528039,7 @@ Wiz is a convienient tool for interactively plotting data. Wiz allows users to q
     sc:url "http://genius.embnet.dkfz-heidelberg.de/menu/hobit/embdoc/wordmatch.html" .
 
 <https://bio.tools/wordspy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0203,
@@ -494723,14 +528058,13 @@ Wiz is a convienient tool for interactively plotting data. Wiz allows users to q
 
 <https://bio.tools/worfdb> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1807" ;
-            sc:name "ORF name" ;
-            sc:sameAs "http://edamontology.org/data_1807" ] ;
+            sc:additionalType "http://edamontology.org/data_1807" ;
+            sc:name "ORF name" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0916" ;
-            sc:name "Gene report" ;
-            sc:sameAs "http://edamontology.org/data_0916" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0916" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Gene report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0621 ;
     sc:citation <https://doi.org/10.1101/gr.2496804>,
@@ -494746,7 +528080,7 @@ Wiz is a convienient tool for interactively plotting data. Wiz allows users to q
     sc:url "http://worfdb.dfci.harvard.edu/" .
 
 <https://bio.tools/workflow> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0769,
         edam:topic_3172,
@@ -494760,14 +528094,13 @@ Wiz is a convienient tool for interactively plotting data. Wiz allows users to q
 
 <https://bio.tools/workflow4metabolomics> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3488" ;
-            sc:name "NMR spectrum" ;
-            sc:sameAs "http://edamontology.org/data_3488" ],
+            sc:additionalType "http://edamontology.org/data_3488" ;
+            sc:name "NMR spectrum" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrum" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3650" ;
+            sc:name "Mass spectrum" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Bioinformatics portal" ;
     sc:applicationSubCategory edam:topic_2259,
         edam:topic_3172,
@@ -494806,28 +528139,8 @@ Wiz is a convienient tool for interactively plotting data. Wiz allows users to q
         <https://orcid.org/0000-0003-1742-9711>,
         "Marie Tremblay-Franco" .
 
-<https://bio.tools/workflow_characterizing_nanoparticle_monolayers_biosensors> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0611,
-        edam:topic_0769,
-        edam:topic_3384,
-        edam:topic_3385,
-        edam:topic_3398 ;
-    sc:citation <https://doi.org/10.7287/PEERJ.PREPRINTS.671V2> ;
-    sc:description """A workflow for characterizing nanoparticle monolayers for biosensors.
-
-A persistent challenge in materials science is the characterization of a large ensemble of heterogeneous nanostructures in a set of images. This often leads to practices such as manual particle counting, and sampling bias of a favorable region of the “best” image. Herein, we present the open-source software, imaging criteria and workflow necessary to fully characterize an ensemble of SEM nanoparticle images. Such characterization is critical to nanoparticle biosensors, whose performance and characteristics are determined by the distribution of the underlying nanoparticle film.
-
-||| HOMEPAGE MISSING!.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'nanoparticle', 'SEM' (bio.tools/sem), 'commonly-found', 'low-magnification'""" ;
-    sc:featureList edam:operation_3431,
-        edam:operation_3436,
-        edam:operation_3443 ;
-    sc:name "workflow characterizing nanoparticle monolayers biosensors" ;
-    sc:url "https://doi.org/10.7287/PEERJ.PREPRINTS.671V2" .
-
 <https://bio.tools/workflowhub> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web API",
         "Web application" ;
@@ -494854,7 +528167,7 @@ WorkflowHub aims to facilitate discovery and re-use of workflows in an accessibl
     biotools:primaryContact <https://orcid.org/0000-0002-0048-3300> .
 
 <https://bio.tools/workflowr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0749,
         edam:topic_0769 ;
@@ -494879,41 +528192,15 @@ Provides a workflow for your analysis projects by combining literate programming
     sc:name "workflowr" ;
     sc:url "https://github.com/jdblischak/workflowr" .
 
-<https://bio.tools/workflowr_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0621,
-        edam:topic_0749,
-        edam:topic_0769 ;
-    sc:citation <https://doi.org/10.12688/F1000RESEARCH.20843.1>,
-        "pmcid:PMC6833990",
-        "pubmed:31723427" ;
-    sc:description """Creating and sharing reproducible research code the workflowr way.
-
-Organize your project into a research website.
-
-workflowr: organized + reproducible + shareable data science in R.
-
-The workflowr R package helps researchers organize their analyses in a way that promotes effective project management, reproducibility, collaboration, and sharing of results. Workflowr combines literate programming (knitr and rmarkdown) and version control (Git, via git2r) to generate a website containing time-stamped, versioned, and documented results. Any R user can quickly and easily adopt workflowr.
-
-A Framework for Reproducible and Collaborative Data Science.
-
-Provides a workflow for your analysis projects by combining literate programming ('knitr' and 'rmarkdown') and version control ('Git', via 'git2r') to generate a website containing time-stamped, versioned, and documented results""" ;
-    sc:featureList edam:operation_2422,
-        edam:operation_3096,
-        edam:operation_3454 ;
-    sc:license "MIT" ;
-    sc:name "workflowr_autogenerated" ;
-    sc:url "https://github.com/jdblischak/workflowr" .
-
 <https://bio.tools/world-2dpage> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1096" ;
-            sc:name "Sequence accession (protein)" ;
-            sc:sameAs "http://edamontology.org/data_1096" ] ;
+            sc:additionalType "http://edamontology.org/data_1096" ;
+            sc:name "Sequence accession (protein)" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2531" ;
-            sc:name "Experiment report" ;
-            sc:sameAs "http://edamontology.org/data_2531" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2531" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Experiment report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0121 ;
     sc:citation <https://doi.org/10.1016/j.jprot.2008.02.005> ;
@@ -494926,7 +528213,7 @@ Provides a workflow for your analysis projects by combining literate programming
     sc:url "http://world-2dpage.expasy.org/repository/" .
 
 <https://bio.tools/worldflora> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0769,
         edam:topic_0780,
         edam:topic_3050 ;
@@ -494943,30 +528230,27 @@ World Flora Online is an online flora of all known plants, available from <http:
 
 <https://bio.tools/wormbase> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1026" ;
-            sc:name "Gene symbol" ;
-            sc:sameAs "http://edamontology.org/data_1026" ],
+            sc:additionalType "http://edamontology.org/data_0989" ;
+            sc:name "Protein identifier" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0989" ;
-            sc:name "Protein identifier" ;
-            sc:sameAs "http://edamontology.org/data_0989" ],
+            sc:additionalType "http://edamontology.org/data_2295" ;
+            sc:name "Gene ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2295" ;
-            sc:name "Gene ID" ;
-            sc:sameAs "http://edamontology.org/data_2295" ] ;
+            sc:additionalType "http://edamontology.org/data_1026" ;
+            sc:name "Gene symbol" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0916" ;
-            sc:name "Gene report" ;
-            sc:sameAs "http://edamontology.org/data_0916" ],
+            sc:additionalType "http://edamontology.org/data_0916" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Gene report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0916" ;
-            sc:name "Gene report" ;
-            sc:sameAs "http://edamontology.org/data_0916" ],
+            sc:additionalType "http://edamontology.org/data_0916" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Gene report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0916" ;
-            sc:name "Gene report" ;
-            sc:sameAs "http://edamontology.org/data_0916" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0916" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Gene report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web API" ;
     sc:applicationSubCategory edam:topic_0621 ;
@@ -494982,7 +528266,7 @@ World Flora Online is an online flora of all known plants, available from <http:
     biotools:primaryContact "Support" .
 
 <https://bio.tools/wormgender> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_3307,
@@ -494998,7 +528282,7 @@ World Flora Online is an online flora of all known plants, available from <http:
     sc:url "http://www.quantworm.org/" .
 
 <https://bio.tools/wormhole> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_3053,
@@ -495017,7 +528301,7 @@ World Flora Online is an online flora of all known plants, available from <http:
     biotools:primaryContact "George Sutphin" .
 
 <https://bio.tools/wormicloud> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0219,
         edam:topic_0602,
@@ -495036,7 +528320,7 @@ World Flora Online is an online flora of all known plants, available from <http:
     biotools:primaryContact <https://orcid.org/0000-0002-7699-0173> .
 
 <https://bio.tools/wormnet_v3> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0602,
@@ -495058,7 +528342,7 @@ World Flora Online is an online flora of all known plants, available from <http:
     biotools:primaryContact "Insuk Lee" .
 
 <https://bio.tools/wormpose> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_3382,
         edam:topic_3474 ;
@@ -495073,8 +528357,27 @@ The "sample data" is used in the tutorials, it is a small video segment showing
     sc:name "WormPose" ;
     sc:url "https://iteal.github.io/wormpose/" .
 
+<https://bio.tools/wormruler> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Desktop application" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0621,
+        edam:topic_3500 ;
+    sc:citation <https://doi.org/10.17912/MICROPUB.BIOLOGY.000607>,
+        "pmcid:PMC9315411",
+        "pubmed:35903772" ;
+    sc:description "A software to track body length used to characterize a super red-shifted channelrhodopsin in Caenorhabditis elegans." ;
+    sc:featureList edam:operation_3435 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "WormRuler" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/dvettkoe/wormruler" .
+
 <https://bio.tools/worms> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_3071,
         edam:topic_3473 ;
@@ -495091,10 +528394,9 @@ The "sample data" is used in the tutorials, it is a small video segment showing
 
 <https://bio.tools/wossdata> a sc:SoftwareApplication ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0958" ;
-            sc:name "Tool metadata" ;
-            sc:sameAs "http://edamontology.org/data_0958" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0958" ;
+            sc:name "Tool metadata" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0219 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -495125,10 +528427,9 @@ The "sample data" is used in the tutorials, it is a small video segment showing
 
 <https://bio.tools/wossinput> a sc:SoftwareApplication ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0958" ;
-            sc:name "Tool metadata" ;
-            sc:sameAs "http://edamontology.org/data_0958" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0958" ;
+            sc:name "Tool metadata" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0219 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -495159,10 +528460,9 @@ The "sample data" is used in the tutorials, it is a small video segment showing
 
 <https://bio.tools/wossname> a sc:SoftwareApplication ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0958" ;
-            sc:name "Tool metadata" ;
-            sc:sameAs "http://edamontology.org/data_0958" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0958" ;
+            sc:name "Tool metadata" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -495193,10 +528493,9 @@ The "sample data" is used in the tutorials, it is a small video segment showing
 
 <https://bio.tools/wossoperation> a sc:SoftwareApplication ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0958" ;
-            sc:name "Tool metadata" ;
-            sc:sameAs "http://edamontology.org/data_0958" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0958" ;
+            sc:name "Tool metadata" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0219 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -495227,10 +528526,9 @@ The "sample data" is used in the tutorials, it is a small video segment showing
 
 <https://bio.tools/wossoutput> a sc:SoftwareApplication ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0958" ;
-            sc:name "Tool metadata" ;
-            sc:sameAs "http://edamontology.org/data_0958" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0958" ;
+            sc:name "Tool metadata" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0219 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -495261,10 +528559,9 @@ The "sample data" is used in the tutorials, it is a small video segment showing
 
 <https://bio.tools/wossparam> a sc:SoftwareApplication ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0958" ;
-            sc:name "Tool metadata" ;
-            sc:sameAs "http://edamontology.org/data_0958" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0958" ;
+            sc:name "Tool metadata" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0219 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -495295,10 +528592,9 @@ The "sample data" is used in the tutorials, it is a small video segment showing
 
 <https://bio.tools/wosstopic> a sc:SoftwareApplication ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0958" ;
-            sc:name "Tool metadata" ;
-            sc:sameAs "http://edamontology.org/data_0958" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0958" ;
+            sc:name "Tool metadata" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0219 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -495328,7 +528624,7 @@ The "sample data" is used in the tutorials, it is a small video segment showing
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/wosstopic.html" .
 
 <https://bio.tools/wqfm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0194,
         edam:topic_2269 ;
@@ -495345,7 +528641,7 @@ wQFM is a quartet amalgamation method of estimating species tree. It takes a set
     sc:url "https://github.com/Mahim1997/wQFM-2020" .
 
 <https://bio.tools/wrap_n_shake> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0128,
@@ -495364,7 +528660,7 @@ wQFM is a quartet amalgamation method of estimating species tree. It takes a set
     biotools:primaryContact "Mónika Bálint" .
 
 <https://bio.tools/wregex> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0080,
@@ -495380,7 +528676,7 @@ wQFM is a quartet amalgamation method of estimating species tree. It takes a set
     sc:url "http://wregex.ehubio.es/" .
 
 <https://bio.tools/writefcs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_3374,
         edam:topic_3934 ;
@@ -495397,62 +528693,62 @@ wQFM is a quartet amalgamation method of estimating species tree. It takes a set
 
 <https://bio.tools/writerestohtml> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1975" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1975" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ],
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Image" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Image" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1975" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ],
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Image" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1975" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1975" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Image" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2968" ;
-            sc:name "Image" ;
-            sc:sameAs "http://edamontology.org/data_2968" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_1975" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Image" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ] ;
+            sc:additionalType "http://edamontology.org/data_2968" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Image" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0006" ;
-            sc:name "Data" ;
-            sc:sameAs "http://edamontology.org/data_0006" ],
+            sc:additionalType "http://edamontology.org/data_0006" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0099,
@@ -495472,26 +528768,26 @@ wQFM is a quartet amalgamation method of estimating species tree. It takes a set
 
 <https://bio.tools/ws_snps_and_go> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1467" ;
-            sc:name "Protein chain" ;
-            sc:sameAs "http://edamontology.org/data_1467" ],
+            sc:additionalType "http://edamontology.org/data_2209" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Mutation ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1127" ;
-            sc:name "PDB ID" ;
-            sc:sameAs "http://edamontology.org/data_1127" ],
+            sc:additionalType "http://edamontology.org/data_1467" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Protein chain" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1176" ;
-            sc:name "GO concept ID" ;
-            sc:sameAs "http://edamontology.org/data_1176" ],
+            sc:additionalType "http://edamontology.org/data_1176" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "GO concept ID" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2209" ;
-            sc:name "Mutation ID" ;
-            sc:sameAs "http://edamontology.org/data_2209" ] ;
+            sc:additionalType "http://edamontology.org/data_1127" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "PDB ID" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1622" ;
-            sc:name "Disease report" ;
-            sc:sameAs "http://edamontology.org/data_1622" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1622" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Disease report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application",
         "Web service" ;
     sc:applicationSubCategory edam:topic_0123,
@@ -495517,8 +528813,28 @@ wQFM is a quartet amalgamation method of estimating species tree. It takes a set
     biotools:primaryContact <http://orcid.org/0000-0002-2323-0963>,
         "Rita Casadio" .
 
+<https://bio.tools/wsdl-ad> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_2269,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.3389/FPHYS.2022.850951>,
+        "pmcid:PMC9037749",
+        "pubmed:35480046" ;
+    sc:description "Generalizable Beat-by-Beat Arrhythmia Detection by Using Weakly Supervised Deep Learning." ;
+    sc:featureList edam:operation_3435,
+        edam:operation_3436,
+        edam:operation_3937 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "WSDL-AD" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/sdnjly/WSDL-AD" .
+
 <https://bio.tools/wsgobiospace> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_2258,
         edam:topic_3071 ;
@@ -495534,7 +528850,7 @@ wQFM is a quartet amalgamation method of estimating species tree. It takes a set
     sc:url "http://gmd.mpimp-golm.mpg.de/GoBioSpace.aspx" .
 
 <https://bio.tools/wslibrarysearch> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_2258 ;
     sc:description "These web services provide access to methods for matching user submitted spectra against the GMD." ;
@@ -495548,7 +528864,7 @@ wQFM is a quartet amalgamation method of estimating species tree. It takes a set
     sc:url "http://gmd.mpimp-golm.mpg.de/webservices/wsLibrarySearch.asmx" .
 
 <https://bio.tools/wsprediction> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_2258,
         edam:topic_3071 ;
@@ -495564,7 +528880,7 @@ wQFM is a quartet amalgamation method of estimating species tree. It takes a set
     sc:url "http://gmd.mpimp-golm.mpg.de/webservices/wsPrediction.asmx" .
 
 <https://bio.tools/wssas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0080 ;
     sc:citation <https://doi.org/10.1093/protein/11.10.855> ;
@@ -495579,7 +528895,7 @@ wQFM is a quartet amalgamation method of estimating species tree. It takes a set
     sc:url "http://www.ebi.ac.uk/thornton-srv/databases/WSsas/" .
 
 <https://bio.tools/wtdbg2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0605,
         edam:topic_3316 ;
@@ -495595,7 +528911,7 @@ wQFM is a quartet amalgamation method of estimating species tree. It takes a set
     sc:url "https://github.com/ruanjue/wtdbg2" .
 
 <https://bio.tools/wtest> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0654,
         edam:topic_3053,
@@ -495613,7 +528929,7 @@ Perform the calculation of W-test, diagnostic checking, calculate minor allele f
     sc:url "https://CRAN.R-project.org/package=wtest" .
 
 <https://bio.tools/wtfgenes> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0089 ;
@@ -495625,7 +528941,7 @@ Perform the calculation of W-test, diagnostic checking, calculate minor allele f
     sc:url "https://evoldoers.github.io/wtfgo/web/index.html" .
 
 <https://bio.tools/wto> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
@@ -495644,7 +528960,7 @@ For more than a decade, gene expression data sets have been used as basis for th
     sc:url "https://github.com/andrevo/DiffCoEx-WTO" .
 
 <https://bio.tools/wtp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0637,
         edam:topic_0769,
         edam:topic_3837 ;
@@ -495656,7 +528972,7 @@ For more than a decade, gene expression data sets have been used as basis for th
     sc:url "https://github.com/replikation/What_the_Phage" .
 
 <https://bio.tools/wu-crispr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0099,
@@ -495674,7 +528990,7 @@ For more than a decade, gene expression data sets have been used as basis for th
     sc:url "http://crispr.wustl.edu/" .
 
 <https://bio.tools/wu-neat> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3303 ;
     sc:citation <https://doi.org/10.1016/J.CMPB.2020.105716>,
         "pmcid:PMC7606381",
@@ -495689,7 +529005,7 @@ Many qualitative and quantitative metrics have been developed to analyze the out
     sc:url "http://research.peds.wustl.edu/neat" .
 
 <https://bio.tools/wurst> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -495710,7 +529026,7 @@ Many qualitative and quantitative metrics have been developed to analyze the out
     sc:url "http://www.zbh.uni-hamburg.de/wurst/" .
 
 <https://bio.tools/wwligcsrre> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3343 ;
     sc:citation "pubmed:19429687" ;
@@ -495724,8 +529040,32 @@ Many qualitative and quantitative metrics have been developed to analyze the out
     biotools:primaryContact "Michel Petitjean",
         "Pierre Tuffery" .
 
+<https://bio.tools/x-cap> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0199,
+        edam:topic_0622,
+        edam:topic_3170,
+        edam:topic_3474,
+        edam:topic_3676 ;
+    sc:citation <https://doi.org/10.1186/S13073-022-01078-Y>,
+        "pmcid:PMC9338606",
+        "pubmed:35906703" ;
+    sc:description "X-CAP is a GBT model that predicts the pathogenicity of single-nucleotide stopgain variants. This repository contains the trained model as well as code to run X-CAP on a VCF file of variants." ;
+    sc:featureList edam:operation_0331,
+        edam:operation_3196,
+        edam:operation_3227,
+        edam:operation_3461 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "X-CAP" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/bejerano-lab/X-CAP" .
+
 <https://bio.tools/x-cnn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3169,
@@ -495742,7 +529082,7 @@ Many qualitative and quantitative metrics have been developed to analyze the out
     sc:url "https://github.com/ernstlab/X-CNN" .
 
 <https://bio.tools/x-cnv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0625,
@@ -495767,7 +529107,7 @@ Many qualitative and quantitative metrics have been developed to analyze the out
     sc:url "http://www.unimd.org/XCNV" .
 
 <https://bio.tools/x-entropy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0176,
         edam:topic_0769,
@@ -495787,7 +529127,7 @@ Many qualitative and quantitative metrics have been developed to analyze the out
     biotools:primaryContact <https://orcid.org/0000-0002-0985-2299> .
 
 <https://bio.tools/x-lrt> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0634,
         edam:topic_3053,
@@ -495801,7 +529141,7 @@ Many qualitative and quantitative metrics have been developed to analyze the out
     sc:url "http://dmpi.duke.edu/x-lrt" .
 
 <https://bio.tools/x-mate> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_3168 ;
@@ -495815,7 +529155,7 @@ Many qualitative and quantitative metrics have been developed to analyze the out
     sc:url "http://genomicbiology.org/2011/02/15/x-mate/" .
 
 <https://bio.tools/x-ray-calculator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3070,
         edam:topic_3344,
@@ -495831,7 +529171,7 @@ Many qualitative and quantitative metrics have been developed to analyze the out
     biotools:primaryContact "Christopher Hall" .
 
 <https://bio.tools/x2k> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0128,
@@ -495851,7 +529191,7 @@ Many qualitative and quantitative metrics have been developed to analyze the out
     sc:url "http://www.maayanlab.net/X2K" .
 
 <https://bio.tools/x2k_web> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0749 ;
     sc:citation <https://doi.org/10.1093/nar/gky458>,
@@ -495865,7 +529205,7 @@ Many qualitative and quantitative metrics have been developed to analyze the out
     biotools:primaryContact <https://orcid.org/0000-0002-6904-1017> .
 
 <https://bio.tools/xQTLImp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0625,
@@ -495885,22 +529225,22 @@ Many qualitative and quantitative metrics have been developed to analyze the out
 
 <https://bio.tools/x_hunter> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ],
+            sc:additionalType "http://edamontology.org/data_0850" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence set" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0850" ;
-            sc:name "Sequence set" ;
-            sc:sameAs "http://edamontology.org/data_0850" ],
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3651" ;
+            sc:name "Mass spectrometry spectra" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3651" ;
+            sc:name "Mass spectrometry spectra" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_3711" ;
+            sc:name "Peptide identification" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -495917,7 +529257,7 @@ Many qualitative and quantitative metrics have been developed to analyze the out
     sc:url "http://www.thegpm.org/hunter/index.html" .
 
 <https://bio.tools/xander> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_3174,
@@ -495931,7 +529271,7 @@ Many qualitative and quantitative metrics have been developed to analyze the out
     sc:url "https://github.com/rdpstaff/Xander_assembler" .
 
 <https://bio.tools/xansons> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_2828 ;
     sc:citation <https://doi.org/10.1016/j.softx.2017.01.004> ;
@@ -495947,7 +529287,7 @@ Many qualitative and quantitative metrics have been developed to analyze the out
     biotools:primaryContact "V. S. Neverov" .
 
 <https://bio.tools/xanthusbase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0621,
@@ -495966,7 +529306,7 @@ Many qualitative and quantitative metrics have been developed to analyze the out
     biotools:primaryContact "Roy D. Welch" .
 
 <https://bio.tools/xaom> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_3382,
@@ -495982,7 +529322,7 @@ Many qualitative and quantitative metrics have been developed to analyze the out
     biotools:primaryContact "Ivan Štajduhar" .
 
 <https://bio.tools/xaperones> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_1317 ;
     sc:description "Generates Xaperones to facilitate the crystallization of proteins of interest." ;
@@ -495992,7 +529332,7 @@ Many qualitative and quantitative metrics have been developed to analyze the out
     sc:url "http://www.xaperones.com" .
 
 <https://bio.tools/xbs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0769,
@@ -496015,18 +529355,18 @@ Many qualitative and quantitative metrics have been developed to analyze the out
 
 <https://bio.tools/xbseq> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2887" ;
-            sc:name "Nucleic acid sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2887" ],
+            sc:additionalType "http://edamontology.org/data_0863" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Sequence alignment" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0863" ;
-            sc:name "Sequence alignment" ;
-            sc:sameAs "http://edamontology.org/data_0863" ] ;
+            sc:additionalType "http://edamontology.org/data_2887" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Nucleic acid sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3547" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -496046,7 +529386,7 @@ Many qualitative and quantitative metrics have been developed to analyze the out
     biotools:primaryContact "Yuanhang Liu" .
 
 <https://bio.tools/xcavator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0622,
@@ -496065,7 +529405,7 @@ Many qualitative and quantitative metrics have been developed to analyze the out
     biotools:primaryContact "Alberto Magi" .
 
 <https://bio.tools/xcellerator> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2259,
@@ -496081,7 +529421,7 @@ Many qualitative and quantitative metrics have been developed to analyze the out
     sc:url "http://xcellerator.info/" .
 
 <https://bio.tools/xchemexplorer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_2814,
@@ -496104,18 +529444,18 @@ Many qualitative and quantitative metrics have been developed to analyze the out
 
 <https://bio.tools/xcms> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ],
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:encodingFormat "http://edamontology.org/format_3650" ;
+            sc:name "Mass spectrometry data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3650" ;
+            sc:name "Mass spectrometry spectra" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:encodingFormat "http://edamontology.org/format_3650" ;
+            sc:name "Mass spectrometry data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -496143,14 +529483,14 @@ Many qualitative and quantitative metrics have been developed to analyze the out
 
 <https://bio.tools/xcms_online> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3483" ;
-            sc:name "Spectrum" ;
-            sc:sameAs "http://edamontology.org/data_3483" ] ;
+            sc:additionalType "http://edamontology.org/data_3483" ;
+            sc:encodingFormat "http://edamontology.org/format_3245" ;
+            sc:name "Spectrum" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:encodingFormat "http://edamontology.org/format_2013" ;
+            sc:name "Pathway or network" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2259,
@@ -496167,7 +529507,7 @@ Many qualitative and quantitative metrics have been developed to analyze the out
     sc:url "http://xcmsonline.scripps.edu/landing_page.php?pgcontent=mainPage" .
 
 <https://bio.tools/xcomb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -496179,7 +529519,7 @@ Many qualitative and quantitative metrics have been developed to analyze the out
     sc:url "https://goodlett.umaryland.edu/xcomb.php" .
 
 <https://bio.tools/xconnector> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0602,
@@ -496199,7 +529539,7 @@ Many qualitative and quantitative metrics have been developed to analyze the out
     sc:url "https://github.com/Proteomicslab57357/Xconnector" .
 
 <https://bio.tools/xde> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -496223,8 +529563,31 @@ Many qualitative and quantitative metrics have been developed to analyze the out
     sc:url "http://bioconductor.org/packages/release/bioc/html/XDE.html" ;
     biotools:primaryContact "Robert Scharpf" .
 
+<https://bio.tools/xdeathdb> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal" ;
+    sc:applicationSubCategory edam:topic_0602,
+        edam:topic_2229,
+        edam:topic_2640,
+        edam:topic_3172,
+        edam:topic_3930 ;
+    sc:citation <https://doi.org/10.1038/S41419-021-04397-X>,
+        "pmcid:PMC8669630",
+        "pubmed:34907160" ;
+    sc:description "A visualization platform for cell death molecular interactions." ;
+    sc:featureList edam:operation_0314,
+        edam:operation_3436,
+        edam:operation_3925,
+        edam:operation_3926 ;
+    sc:isAccessibleForFree true ;
+    sc:name "XDeathDB" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://pcm2019.shinyapps.io/XDeathDB/" .
+
 <https://bio.tools/xdream> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3304,
         edam:topic_3382,
         edam:topic_3474,
@@ -496244,7 +529607,7 @@ XDream (Extending DeepDream with real-time evolution for activity maximization i
     sc:url "https://github.com/willwx/XDream/" .
 
 <https://bio.tools/xds> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0092,
@@ -496263,35 +529626,56 @@ XDream (Extending DeepDream with real-time evolution for activity maximization i
     sc:softwareVersion "1" ;
     sc:url "http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/" .
 
+<https://bio.tools/xefoldmine> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0130,
+        edam:topic_0154,
+        edam:topic_0593,
+        edam:topic_0736,
+        edam:topic_3542 ;
+    sc:citation <https://doi.org/10.1016/J.CSBJ.2021.08.041>,
+        "pmcid:PMC8433119",
+        "pubmed:34527196" ;
+    sc:description "XEFoldMine (eXplainable EFoldMine). A website, where you can explore which amino acid residues in proteins that are predicted to be early folding, this in relation to the sequence fragment it occurs in, and the final secondary structure this fragment adopts in the protein (when folded)." ;
+    sc:featureList edam:operation_0303,
+        edam:operation_0474,
+        edam:operation_2415,
+        edam:operation_2488 ;
+    sc:isAccessibleForFree true ;
+    sc:name "XEFoldMine" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://xefoldmine.bio2byte.be/" .
+
 <https://bio.tools/xeml-lab> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
-    sc:additionalType "Desktop application" ;
-    sc:applicationSubCategory edam:topic_3053,
-        edam:topic_3292 ;
-    sc:author "Benjamin Dartigues",
-        "Emmanuel Bouilhol" ;
-    sc:citation <https://doi.org/10.1111/j.1365-3040.2009.01964.x> ;
-    sc:contributor "CHen Zhui",
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0089,
+        edam:topic_0091,
+        edam:topic_0219 ;
+    sc:author "Benjamin Dartigues" ;
+    sc:contributor "Alexis Groppi",
         "Cecile Cabasson",
+        "Macha Nikolski",
         "Yves Gibon" ;
-    sc:description "Interactive timeline visualisation that enables the intuitive design of experiments in terms of growth conditions and sampling strategy using related Ontologies (Xeo, EnvO, EO) while the corresponding metadata are automatically stored in the background in Xeml standardized format, ready for data mining." ;
-    sc:featureList edam:operation_3559 ;
+    sc:description "The web application Linda offers a complete tool for entering and managing metadata associated with a phenotyping experiment on plants. It thus makes it possible to intuitively describe experimental related information such as, for example, the experimental design, the growth protocols, the environmental variable measurements, etc. Linda is coupled with a database that stores this information in a structured manneer using oriented graphs. This database uses reference ontologies (e.g., Plant Ontology, Crop Ontology, etc.) and standards dedicated to this type of experiment such as the Minimal Information About Plant Phenotyping Experiment (MIAPPE) standard. Data sharing is facilitated on the one hand by respecting the FAIR principles (Findable Accessible Interoperable Reusable) and oon the other hand, by exporting this metadata relating to the experiment in tabulated formats or formatted for submission in the international databases (ISA-tab)." ;
+    sc:featureList edam:operation_3431 ;
     sc:isAccessibleForFree true ;
     sc:license "MIT" ;
-    sc:name "XEML-Lab" ;
+    sc:name "Linda" ;
     sc:operatingSystem "Linux",
-        "Mac",
-        "Windows" ;
+        "Mac" ;
     sc:provider "Centre de Bioinformatique de Bordeaux (CBiB)",
-        "UMR 1332 - Biologie du Fruit et Pathologie",
-        "u-bordeaux.fr" ;
-    sc:softwareHelp <https://github.com/cbib/XEML-Lab> ;
+        "UMR 1332 - Biologie du Fruit et Pathologie" ;
+    sc:softwareHelp <https://services.cbib.u-bordeaux.fr/linda> ;
     sc:softwareVersion "1" ;
-    sc:url "https://github.com/cbib/XEML-Lab" ;
+    sc:url "https://services.cbib.u-bordeaux.fr/linda/" ;
     biotools:primaryContact "Benjamin Dartigues" .
 
 <https://bio.tools/xenbase> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0203,
@@ -496313,7 +529697,7 @@ XDream (Extending DeepDream with real-time evolution for activity maximization i
     biotools:primaryContact "Jeff B. Bowes" .
 
 <https://bio.tools/xenogi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0622,
@@ -496334,7 +529718,7 @@ XDream (Extending DeepDream with real-time evolution for activity maximization i
     biotools:primaryContact "Eliot C. Bush" .
 
 <https://bio.tools/xenonet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0602,
         edam:topic_3172,
@@ -496353,7 +529737,7 @@ XenoNet Web provides prediction web services for small molecule biochemistry. Xe
     sc:url "https://swami.wustl.edu/xenonet" .
 
 <https://bio.tools/xenosite> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0154,
@@ -496372,7 +529756,7 @@ XenoNet Web provides prediction web services for small molecule biochemistry. Xe
     sc:url "http://swami.wustl.edu/xenosite" .
 
 <https://bio.tools/xephir> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0621,
@@ -496390,7 +529774,7 @@ XenoNet Web provides prediction web services for small molecule biochemistry. Xe
     sc:url "http://www.xephir.org" .
 
 <https://bio.tools/xg-ac4c> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0108,
         edam:topic_0749,
@@ -496407,7 +529791,7 @@ XG-ac4C: Identification of N4-acetylcytidine (ac4C) in mRNA by using eXtreme Gra
     sc:url "http://nsclbio.jbnu.ac.kr/tools/xgac4c/" .
 
 <https://bio.tools/xg-m7g> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0749,
         edam:topic_3308,
         edam:topic_3474,
@@ -496425,7 +529809,7 @@ Recent studies have increasingly shown that the chemical modification of mRNA pl
     sc:url "http://flagship.erc.monash.edu/XG-m7G/" .
 
 <https://bio.tools/xgblc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2269,
@@ -496445,7 +529829,7 @@ Recent studies have increasingly shown that the chemical modification of mRNA pl
     sc:url "https://github.com/lab319/XGBLC" .
 
 <https://bio.tools/xglycscan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0121,
@@ -496460,7 +529844,7 @@ Recent studies have increasingly shown that the chemical modification of mRNA pl
     sc:url "https://bitbucket.org/paiyetan/xglycscan/" .
 
 <https://bio.tools/xgr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0622,
@@ -496481,7 +529865,7 @@ Recent studies have increasingly shown that the chemical modification of mRNA pl
     biotools:primaryContact "Julian C. Knight" .
 
 <https://bio.tools/xgraphboost> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2275,
@@ -496501,7 +529885,7 @@ Recent studies have increasingly shown that the chemical modification of mRNA pl
         <https://orcid.org/0000-0002-8108-6007> .
 
 <https://bio.tools/xgsea> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
         edam:topic_0625,
@@ -496516,7 +529900,7 @@ Recent studies have increasingly shown that the chemical modification of mRNA pl
     sc:url "https://github.com/LiminLi-xjtu/XGSEA" .
 
 <https://bio.tools/xheinz> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0602 ;
     sc:author "Daniela Beisser",
@@ -496551,7 +529935,7 @@ Recent studies have increasingly shown that the chemical modification of mRNA pl
     sc:url "https://github.com/ls-cwi/xheinz" .
 
 <https://bio.tools/xhm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0654,
@@ -496567,7 +529951,7 @@ Recent studies have increasingly shown that the chemical modification of mRNA pl
     sc:url "http://www.bioinfo.no/tools/xhm/" .
 
 <https://bio.tools/xia2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_1317,
         edam:topic_2828 ;
@@ -496586,7 +529970,7 @@ Recent studies have increasingly shown that the chemical modification of mRNA pl
     sc:url "https://xia2.github.io/" .
 
 <https://bio.tools/xicra> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Workflow" ;
     sc:applicationSubCategory edam:topic_0099,
@@ -496603,7 +529987,7 @@ Recent studies have increasingly shown that the chemical modification of mRNA pl
     sc:url "https://github.com/HCGB-IGTP/XICRA" .
 
 <https://bio.tools/xilmass> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0121 ;
@@ -496622,14 +530006,14 @@ Recent studies have increasingly shown that the chemical modification of mRNA pl
 
 <https://bio.tools/xina> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ] ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Expression data" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3508" ;
+            sc:name "Plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3308 ;
@@ -496650,7 +530034,7 @@ Recent studies have increasingly shown that the chemical modification of mRNA pl
         "Sasha A. Singh" .
 
 <https://bio.tools/xip> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0769,
@@ -496666,7 +530050,7 @@ Recent studies have increasingly shown that the chemical modification of mRNA pl
     sc:url "http://xip.hgc.jp/" .
 
 <https://bio.tools/xispec> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application",
         "Web application" ;
     sc:applicationSubCategory edam:topic_3520 ;
@@ -496683,7 +530067,7 @@ Recent studies have increasingly shown that the chemical modification of mRNA pl
         "Prof Juri Rappsilber" .
 
 <https://bio.tools/xlink> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -496699,7 +530083,7 @@ Recent studies have increasingly shown that the chemical modification of mRNA pl
     sc:url "http://tools.proteomecenter.org/XLink.php" .
 
 <https://bio.tools/xlink_analyzer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0081,
         edam:topic_0128,
@@ -496714,7 +530098,7 @@ Recent studies have increasingly shown that the chemical modification of mRNA pl
     sc:url "http://www.beck.embl.de/XlinkAnalyzer.html" .
 
 <https://bio.tools/xlinkcynet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0121,
         edam:topic_0128,
@@ -496742,10 +530126,10 @@ XlinkCyNET is an open-source Java plugin that generates residue-to-residue conne
 
 <https://bio.tools/xlinkdb> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Peptide identification" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_2814 ;
@@ -496765,7 +530149,7 @@ XlinkCyNET is an open-source Java plugin that generates residue-to-residue conne
     sc:url "http://xlinkdb.gs.washington.edu/xlinkdb/" .
 
 <https://bio.tools/xlm-tools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
         edam:topic_2814,
@@ -496785,7 +530169,7 @@ Scoring for Crosslinks is performed using MNXL and Monolinks are scored by MoDS.
     sc:url "https://github.com/Topf-Lab/XLM-Tools" .
 
 <https://bio.tools/xlmap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_1317,
         edam:topic_2275,
@@ -496799,8 +530183,32 @@ Scoring for Crosslinks is performed using MNXL and Monolinks are scored by MoDS.
     sc:softwareHelp <https://github.com/mammmals/XLmap/blob/master/README.md> ;
     sc:url "http://brucelab.gs.washington.edu/software.html" .
 
+<https://bio.tools/xlnc1dcnn> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0203,
+        edam:topic_0659,
+        edam:topic_3170,
+        edam:topic_3474,
+        edam:topic_3512 ;
+    sc:citation <https://doi.org/10.3389/FGENE.2022.876721>,
+        "pmcid:PMC9173695",
+        "pubmed:35685437" ;
+    sc:description "Interpretable Deep Learning Model Reveals Subsequences of Various Functions for Long Non-Coding RNA Identification." ;
+    sc:featureList edam:operation_0269,
+        edam:operation_0443,
+        edam:operation_3216,
+        edam:operation_3904 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "Xlnc1DCNN" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/cucpbioinfo/Xlnc1DCNN" .
+
 <https://bio.tools/xman> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0654 ;
@@ -496816,7 +530224,7 @@ Scoring for Crosslinks is performed using MNXL and Monolinks are scored by MoDS.
     sc:url "http://liulab.dfci.harvard.edu/WEBSITE/software.htm" .
 
 <https://bio.tools/xman-v2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0154,
         edam:topic_0199 ;
@@ -496831,14 +530239,14 @@ Scoring for Crosslinks is performed using MNXL and Monolinks are scored by MoDS.
 
 <https://bio.tools/xmapbridge> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2887" ;
-            sc:name "Nucleic acid sequence record" ;
-            sc:sameAs "http://edamontology.org/data_2887" ] ;
+            sc:additionalType "http://edamontology.org/data_2887" ;
+            sc:encodingFormat "http://edamontology.org/format_3161" ;
+            sc:name "Nucleic acid sequence record" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2166" ;
-            sc:name "Sequence composition plot" ;
-            sc:sameAs "http://edamontology.org/data_2166" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2166" ;
+            sc:encodingFormat "http://edamontology.org/format_3617" ;
+            sc:name "Sequence composition plot" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0102 ;
@@ -496858,7 +530266,7 @@ Scoring for Crosslinks is performed using MNXL and Monolinks are scored by MoDS.
     biotools:primaryContact "Chris Wirth" .
 
 <https://bio.tools/xmatchview> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0092 ;
@@ -496873,7 +530281,7 @@ Scoring for Crosslinks is performed using MNXL and Monolinks are scored by MoDS.
     biotools:primaryContact "R. Warren" .
 
 <https://bio.tools/xmipp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0611,
         edam:topic_0769,
@@ -496885,17 +530293,16 @@ Scoring for Crosslinks is performed using MNXL and Monolinks are scored by MoDS.
         edam:operation_2409,
         edam:operation_3552 ;
     sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
     sc:name "XMIPP" ;
-    sc:operatingSystem "Linux",
-        "Mac",
-        "Windows" ;
-    sc:provider "Instruct" ;
-    sc:softwareHelp <http://xmipp.cnb.csic.es/twiki/bin/view/Xmipp/WebHome> ;
-    sc:softwareVersion "1" ;
-    sc:url "http://xmipp.cnb.csic.es/" .
+    sc:operatingSystem "Linux" ;
+    sc:provider "Instruct Image Processing Center (I2PC)" ;
+    sc:softwareHelp <https://github.com/I2PC/xmipp-portal/wiki> ;
+    sc:softwareVersion "3.22" ;
+    sc:url "http://xmipp.i2pc.es/" .
 
 <https://bio.tools/xml2raf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102 ;
     sc:description "XML2RAF is a Perl software to create RAF maps from PDB XML files.The Protein Data Bank provides XML files that include a mapping between the PDB-format records SEQRES (representing the sequence of the molecule used in an experiment) and ATOM (representing the atoms experimentally observed). These XML files (along with the PDB’s chemical dictionary) also provide information on the original identity of most residues prior to any post-translational modifications, including cyclizations." ;
@@ -496909,14 +530316,14 @@ Scoring for Crosslinks is performed using MNXL and Monolinks are scored by MoDS.
 
 <https://bio.tools/xml2tsv> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ] ;
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_3655" ;
+            sc:name "Peptide identification" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_3475" ;
+            sc:name "Peptide identification" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:description "Utility to convert peptide identifications from one format to another." ;
     sc:featureList edam:operation_3434 ;
     sc:name "xml2tsv" ;
@@ -496924,14 +530331,14 @@ Scoring for Crosslinks is performed using MNXL and Monolinks are scored by MoDS.
 
 <https://bio.tools/xmlget> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0957" ;
-            sc:name "Database metadata" ;
-            sc:sameAs "http://edamontology.org/data_0957" ] ;
+            sc:additionalType "http://edamontology.org/data_0957" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Database metadata" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0957" ;
-            sc:name "Database metadata" ;
-            sc:sameAs "http://edamontology.org/data_0957" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0957" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Database metadata" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_3071,
@@ -496966,14 +530373,14 @@ Scoring for Crosslinks is performed using MNXL and Monolinks are scored by MoDS.
 
 <https://bio.tools/xmltext> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0957" ;
-            sc:name "Database metadata" ;
-            sc:sameAs "http://edamontology.org/data_0957" ] ;
+            sc:additionalType "http://edamontology.org/data_0957" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Database metadata" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0957" ;
-            sc:name "Database metadata" ;
-            sc:sameAs "http://edamontology.org/data_0957" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0957" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Database metadata" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_3071,
@@ -497007,7 +530414,7 @@ Scoring for Crosslinks is performed using MNXL and Monolinks are scored by MoDS.
     sc:url "http://www.bioinformatics.nl/cgi-bin/emboss/xmltext" .
 
 <https://bio.tools/xmmol> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_2275,
@@ -497022,7 +530429,7 @@ Scoring for Crosslinks is performed using MNXL and Monolinks are scored by MoDS.
     sc:url "http://bioserv.rpbs.univ-paris-diderot.fr/software/XmMol/" .
 
 <https://bio.tools/xmrf> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_2259,
@@ -497041,7 +530448,7 @@ Scoring for Crosslinks is performed using MNXL and Monolinks are scored by MoDS.
     biotools:primaryContact "Ying-Wooi Wan" .
 
 <https://bio.tools/xmwas> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -497063,7 +530470,7 @@ Scoring for Crosslinks is performed using MNXL and Monolinks are scored by MoDS.
     biotools:primaryContact "Karan Uppal" .
 
 <https://bio.tools/xnat-fhir> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3071,
         edam:topic_3379,
         edam:topic_3384 ;
@@ -497078,8 +530485,30 @@ This plugin provides an additional REST API for XNAT 1.7, implementing the HL7 F
     sc:name "XNAT FHIR" ;
     sc:url "https://github.com/somnonetz/xnat-fhir-plugin" .
 
+<https://bio.tools/xnat-pic> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_3379,
+        edam:topic_3384,
+        edam:topic_3444,
+        edam:topic_3452,
+        edam:topic_3954 ;
+    sc:citation <https://doi.org/10.1007/S10278-022-00612-Z>,
+        "pubmed:35304674" ;
+    sc:description "XNAT for Preclinical Imaging Centers (XNAT-PIC) has been developed to expand XNAT's basic functionalities to preclinical imaging and consists of:" ;
+    sc:featureList edam:operation_3435,
+        edam:operation_3443,
+        edam:operation_3553 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-3.0" ;
+    sc:name "XNAT-PIC" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/szullino/XNAT-PIC" .
+
 <https://bio.tools/xp-ehh> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3056 ;
     sc:citation <https://doi.org/10.1038/nature06250>,
@@ -497094,7 +530523,7 @@ This plugin provides an additional REST API for XNAT 1.7, implementing the HL7 F
     sc:url "http://hgdp.uchicago.edu/Software/" .
 
 <https://bio.tools/xparal> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0097,
@@ -497110,7 +530539,7 @@ This plugin provides an additional REST API for XNAT 1.7, implementing the HL7 F
     sc:url "http://www.cs.ucdavis.edu/~gusfield/xparall/index.html" .
 
 <https://bio.tools/xplasmap> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0102,
@@ -497126,50 +530555,50 @@ This plugin provides an additional REST API for XNAT 1.7, implementing the HL7 F
 
 <https://bio.tools/xplatcom> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ],
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:encodingFormat "http://edamontology.org/format_3244" ;
+            sc:name "Mass spectrometry data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ],
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0928" ;
-            sc:name "Gene expression profile" ;
-            sc:sameAs "http://edamontology.org/data_0928" ] ;
+            sc:additionalType "http://edamontology.org/data_0928" ;
+            sc:encodingFormat "http://edamontology.org/format_1638" ;
+            sc:name "Gene expression profile" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2884" ;
-            sc:name "Plot" ;
-            sc:sameAs "http://edamontology.org/data_2884" ],
+            sc:additionalType "http://edamontology.org/data_1448" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Comparison matrix (nucleotide)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2600" ;
-            sc:name "Pathway or network" ;
-            sc:sameAs "http://edamontology.org/data_2600" ],
+            sc:additionalType "http://edamontology.org/data_1449" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Comparison matrix (amino acid)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3754" ;
-            sc:name "GO-term enrichment data" ;
-            sc:sameAs "http://edamontology.org/data_3754" ],
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:encodingFormat "http://edamontology.org/format_3764" ;
+            sc:name "Protein features" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ],
+            sc:additionalType "http://edamontology.org/data_2600" ;
+            sc:encodingFormat "http://edamontology.org/format_3603" ;
+            sc:name "Pathway or network" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2343" ;
-            sc:name "Pathway ID (KEGG)" ;
-            sc:sameAs "http://edamontology.org/data_2343" ],
+            sc:additionalType "http://edamontology.org/data_2048" ;
+            sc:encodingFormat "http://edamontology.org/format_3508" ;
+            sc:name "Report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1448" ;
-            sc:name "Comparison matrix (nucleotide)" ;
-            sc:sameAs "http://edamontology.org/data_1448" ],
+            sc:additionalType "http://edamontology.org/data_2343" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Pathway ID (KEGG)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1449" ;
-            sc:name "Comparison matrix (amino acid)" ;
-            sc:sameAs "http://edamontology.org/data_1449" ],
+            sc:additionalType "http://edamontology.org/data_2884" ;
+            sc:encodingFormat "http://edamontology.org/format_3603" ;
+            sc:name "Plot" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2048" ;
-            sc:name "Report" ;
-            sc:sameAs "http://edamontology.org/data_2048" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3754" ;
+            sc:encodingFormat "http://edamontology.org/format_3603" ;
+            sc:name "GO-term enrichment data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3391 ;
     sc:author "Dr. Michael Kohl" ;
@@ -497189,7 +530618,7 @@ This plugin provides an additional REST API for XNAT 1.7, implementing the HL7 F
     biotools:primaryContact "PD Dr. Martin Eisenacher" .
 
 <https://bio.tools/xplore3d> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Workbench" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0611,
@@ -497207,7 +530636,7 @@ This plugin provides an additional REST API for XNAT 1.7, implementing the HL7 F
     sc:url "http://www.fei.com/applications/life-sciences/" .
 
 <https://bio.tools/xplormed> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0218,
         edam:topic_3068 ;
@@ -497223,7 +530652,7 @@ This plugin provides an additional REST API for XNAT 1.7, implementing the HL7 F
     biotools:primaryContact "XplorMed Support" .
 
 <https://bio.tools/xpn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_2269 ;
@@ -497238,7 +530667,7 @@ This plugin provides an additional REST API for XNAT 1.7, implementing the HL7 F
     sc:url "https://genome.unc.edu/xpn/" .
 
 <https://bio.tools/xpore> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0099,
         edam:topic_0203,
         edam:topic_0602,
@@ -497257,14 +530686,14 @@ Python package for detection of differential RNA modifications from direct RNA s
 
 <https://bio.tools/xpress> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ] ;
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_3655" ;
+            sc:name "Peptide identification" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2603" ;
-            sc:name "Expression data" ;
-            sc:sameAs "http://edamontology.org/data_2603" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2603" ;
+            sc:encodingFormat "http://edamontology.org/format_3655" ;
+            sc:name "Expression data" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
@@ -497282,7 +530711,7 @@ Python package for detection of differential RNA modifications from direct RNA s
     sc:url "http://tools.proteomecenter.org/XPRESS.php" .
 
 <https://bio.tools/xpressyourself> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0203,
         edam:topic_2229,
@@ -497306,7 +530735,7 @@ A toolkit for navigating and analyzing gene expression datasets.""" ;
     sc:url "https://github.com/XPRESSyourself" .
 
 <https://bio.tools/xps> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -497328,8 +530757,29 @@ A toolkit for navigating and analyzing gene expression datasets.""" ;
     sc:url "http://bioconductor.org/packages/release/bioc/html/xps.html" ;
     biotools:primaryContact "Christian Stratowa" .
 
+<https://bio.tools/xpxp> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0625,
+        edam:topic_2885,
+        edam:topic_3517,
+        edam:topic_3577 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC029>,
+        "pubmed:35040939" ;
+    sc:description "Improving polygenic prediction by cross-population and cross-phenotype analysis." ;
+    sc:featureList edam:operation_3196,
+        edam:operation_3435,
+        edam:operation_3659 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "XPXP" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "http://github.com/YangLabHKUST/XPXP" .
+
 <https://bio.tools/xpyder> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0092,
         edam:topic_0602,
@@ -497348,7 +530798,7 @@ A toolkit for navigating and analyzing gene expression datasets.""" ;
     sc:url "http://xpyder.sourceforge.net/" .
 
 <https://bio.tools/xquest> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_2814,
@@ -497365,7 +530815,7 @@ A toolkit for navigating and analyzing gene expression datasets.""" ;
     sc:url "http://proteomics.ethz.ch/orinner/public/htdocs/xquest/xquest_review.html" .
 
 <https://bio.tools/xrei> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_3175,
@@ -497385,10 +530835,10 @@ A toolkit for navigating and analyzing gene expression datasets.""" ;
 
 <https://bio.tools/xrrpred> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Protein sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0611,
@@ -497412,7 +530862,7 @@ A toolkit for navigating and analyzing gene expression datasets.""" ;
     sc:url "http://biomine.cs.vcu.edu/servers/XRRPred/" .
 
 <https://bio.tools/xs> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3168,
         edam:topic_3524 ;
@@ -497429,7 +530879,7 @@ A toolkit for navigating and analyzing gene expression datasets.""" ;
     biotools:primaryContact "Diogo Pratas" .
 
 <https://bio.tools/xscape> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0084,
@@ -497445,8 +530895,55 @@ A toolkit for navigating and analyzing gene expression datasets.""" ;
     sc:softwareHelp <https://www.cs.hmc.edu/xscape/> ;
     sc:url "http://www.cs.hmc.edu/~hadas/xscape/" .
 
+<https://bio.tools/xsi> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_0625,
+        edam:topic_3337,
+        edam:topic_3518,
+        edam:topic_3673 ;
+    sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTAC413>,
+        "pmcid:PMC9344850",
+        "pubmed:35748697" ;
+    sc:description "A genotype compression tool for compressive genomics in large biobanks." ;
+    sc:featureList edam:operation_3196,
+        edam:operation_3211,
+        edam:operation_3557,
+        edam:operation_3802 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "XSI" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/rwk-unil/xSqueezeIt" .
+
+<https://bio.tools/xsim> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0625,
+        edam:topic_0780,
+        edam:topic_3500,
+        edam:topic_3810 ;
+    sc:citation <https://doi.org/10.1093/G3JOURNAL/JKAC032>,
+        "pmcid:PMC8982375",
+        "pubmed:35244161" ;
+    sc:description "A fast and user-friendly tool to simulate sequence data and complicated pedigree structures." ;
+    sc:featureList edam:operation_0487,
+        edam:operation_2426,
+        edam:operation_3927 ;
+    sc:isAccessibleForFree true ;
+    sc:license "GPL-2.0" ;
+    sc:name "XSim" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://reworkhow.github.io/XSim.jl/index.html> ;
+    sc:url "https://github.com/reworkhow/XSim.jl" .
+
 <https://bio.tools/xstk> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0077,
@@ -497464,10 +530961,9 @@ A toolkit for navigating and analyzing gene expression datasets.""" ;
 
 <https://bio.tools/xstreme> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:name "Sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0099,
@@ -497487,7 +530983,7 @@ A toolkit for navigating and analyzing gene expression datasets.""" ;
     sc:url "https://meme-suite.org/meme/tools/xstreme" .
 
 <https://bio.tools/xsult> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_2814,
         edam:topic_3542 ;
@@ -497506,7 +531002,7 @@ A toolkit for navigating and analyzing gene expression datasets.""" ;
     sc:url "http://structure.bioc.cam.ac.uk/xsult/" .
 
 <https://bio.tools/xsurv> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_2640,
         edam:topic_3360,
@@ -497524,7 +531020,7 @@ A toolkit for navigating and analyzing gene expression datasets.""" ;
     sc:url "https://github.com/topycyao/Xsurv" .
 
 <https://bio.tools/xsyn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_2640,
@@ -497543,7 +531039,7 @@ A toolkit for navigating and analyzing gene expression datasets.""" ;
     sc:url "http://www.bdxconsult.com/xSyn.html" .
 
 <https://bio.tools/xtalk> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0602,
@@ -497562,7 +531058,7 @@ A toolkit for navigating and analyzing gene expression datasets.""" ;
     biotools:primaryContact "Support" .
 
 <https://bio.tools/xtalkdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0659 ;
@@ -497580,18 +531076,18 @@ A toolkit for navigating and analyzing gene expression datasets.""" ;
 
 <https://bio.tools/xtandem> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ],
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3653" ;
+            sc:name "Mass spectrometry spectra" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0850" ;
-            sc:name "Sequence set" ;
-            sc:sameAs "http://edamontology.org/data_0850" ] ;
+            sc:additionalType "http://edamontology.org/data_0850" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence set" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_3247" ;
+            sc:name "Peptide identification" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -497610,18 +531106,18 @@ A toolkit for navigating and analyzing gene expression datasets.""" ;
 
 <https://bio.tools/xtandem_parser> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ] ;
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_3711" ;
+            sc:name "Peptide identification" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ],
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3652" ;
+            sc:name "Mass spectrometry spectra" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_3752" ;
+            sc:name "Peptide identification" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -497641,38 +531137,38 @@ A toolkit for navigating and analyzing gene expression datasets.""" ;
 
 <https://bio.tools/xtandempipeline> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ],
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3653" ;
+            sc:name "Mass spectrometry spectra" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1233" ;
-            sc:name "Sequence set (protein)" ;
-            sc:sameAs "http://edamontology.org/data_1233" ],
+            sc:additionalType "http://edamontology.org/data_1233" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence set (protein)" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ],
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3653" ;
+            sc:name "Mass spectrometry spectra" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_3655" ;
+            sc:name "Peptide identification" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0850" ;
-            sc:name "Sequence set" ;
-            sc:sameAs "http://edamontology.org/data_0850" ],
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_2332" ;
+            sc:name "Peptide identification" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3483" ;
-            sc:name "Spectrum" ;
-            sc:sameAs "http://edamontology.org/data_3483" ],
+            sc:additionalType "http://edamontology.org/data_0945" ;
+            sc:encodingFormat "http://edamontology.org/format_3711" ;
+            sc:name "Peptide identification" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ],
+            sc:additionalType "http://edamontology.org/data_3483" ;
+            sc:encodingFormat "http://edamontology.org/format_3604" ;
+            sc:name "Spectrum" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0945" ;
-            sc:name "Peptide identification" ;
-            sc:sameAs "http://edamontology.org/data_0945" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0850" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence set" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -497696,7 +531192,7 @@ A toolkit for navigating and analyzing gene expression datasets.""" ;
     sc:url "http://pappso.inra.fr/bioinfo/xtandempipeline/" .
 
 <https://bio.tools/xtea> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0199,
@@ -497719,7 +531215,7 @@ A toolkit for navigating and analyzing gene expression datasets.""" ;
     sc:url "https://github.com/parklab/xTea" .
 
 <https://bio.tools/xtms> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2259,
@@ -497737,30 +531233,30 @@ A toolkit for navigating and analyzing gene expression datasets.""" ;
 
 <https://bio.tools/xtractor> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ],
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Mass spectrometry data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ],
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Mass spectrometry spectra" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0944" ;
-            sc:name "Peptide mass fingerprint" ;
-            sc:sameAs "http://edamontology.org/data_0944" ] ;
+            sc:additionalType "http://edamontology.org/data_0944" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Peptide mass fingerprint" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0944" ;
-            sc:name "Peptide mass fingerprint" ;
-            sc:sameAs "http://edamontology.org/data_0944" ],
+            sc:additionalType "http://edamontology.org/data_2536" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Mass spectrometry data" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2536" ;
-            sc:name "Mass spectrometry data" ;
-            sc:sameAs "http://edamontology.org/data_2536" ],
+            sc:additionalType "http://edamontology.org/data_0944" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Peptide mass fingerprint" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Mass spectrometry spectra" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -497773,7 +531269,7 @@ A toolkit for navigating and analyzing gene expression datasets.""" ;
     sc:url "http://www.ms-utils.org/Xtractor/" .
 
 <https://bio.tools/xvector> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0622,
@@ -497796,7 +531292,7 @@ A toolkit for navigating and analyzing gene expression datasets.""" ;
     biotools:primaryContact "Hervé Pagès" .
 
 <https://bio.tools/xwalk> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -497819,7 +531315,7 @@ A toolkit for navigating and analyzing gene expression datasets.""" ;
     biotools:primaryContact "Dr. Abdullah Kahraman" .
 
 <https://bio.tools/xxmotif> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -497841,7 +531337,7 @@ A toolkit for navigating and analyzing gene expression datasets.""" ;
     sc:url "https://bammmotif.mpibpc.mpg.de/" .
 
 <https://bio.tools/xylotron> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3050,
         edam:topic_3382,
         edam:topic_3474 ;
@@ -497856,7 +531352,7 @@ Forests, estimated to contain two thirds of the world's biodiversity, face exist
     sc:url "https://github.com/fpl-xylotron" .
 
 <https://bio.tools/y-lineagetracker> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0084,
         edam:topic_0625,
@@ -497876,7 +531372,7 @@ Forests, estimated to contain two thirds of the world's biodiversity, face exist
     biotools:primaryContact <https://orcid.org/0000-0002-1975-1002> .
 
 <https://bio.tools/y2h-scores> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0154,
         edam:topic_0769,
@@ -497896,7 +531392,7 @@ This repository contains the software Y2H-SCORES and supporting code for the pub
     sc:url "https://github.com/Wiselab2/Y2H-SCORES" .
 
 <https://bio.tools/yabi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0091,
         edam:topic_0769,
@@ -497922,7 +531418,7 @@ This repository contains the software Y2H-SCORES and supporting code for the pub
     biotools:primaryContact "Yabi team" .
 
 <https://bio.tools/yacop> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0622,
@@ -497939,7 +531435,7 @@ This repository contains the software Y2H-SCORES and supporting code for the pub
     sc:url "http://gobics.de/tech/yacop.php" .
 
 <https://bio.tools/yacrd> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0196,
         edam:topic_3474 ;
@@ -497958,14 +531454,14 @@ Long Read mapping tools provides all match they found in read dataset, for many
 
 <https://bio.tools/yada> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3651" ;
+            sc:name "Mass spectrometry spectra" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0943" ;
-            sc:name "Mass spectrometry spectra" ;
-            sc:sameAs "http://edamontology.org/data_0943" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0943" ;
+            sc:encodingFormat "http://edamontology.org/format_3651" ;
+            sc:name "Mass spectrometry spectra" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_3520 ;
@@ -497981,7 +531477,7 @@ Long Read mapping tools provides all match they found in read dataset, for many
     sc:url "http://pcarvalho.com/patternlab/downloads/windows/yada/" .
 
 <https://bio.tools/yagm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0625,
@@ -498001,8 +531497,25 @@ Long Read mapping tools provides all match they found in read dataset, for many
         "Meng-Jhun Jhou",
         "Wei-Sheng Wu" .
 
+<https://bio.tools/yahs> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0196,
+        edam:topic_3125 ;
+    sc:citation <https://doi.org/10.1101/2022.06.09.495093> ;
+    sc:description "YaHS is scaffolding tool using Hi-C data. It relies on a new algorithm for contig joining detection which considers the topological distribution of Hi-C signals aiming to distinguish real interaction signals from mapping noises." ;
+    sc:featureList edam:operation_0524,
+        edam:operation_0525,
+        edam:operation_3216 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "YaHS" ;
+    sc:softwareHelp <https://github.com/c-zhou/yahs> ;
+    sc:softwareVersion "1.0" ;
+    sc:url "https://github.com/c-zhou/yahs" .
+
 <https://bio.tools/yakusa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_2275,
@@ -498017,28 +531530,18 @@ Long Read mapping tools provides all match they found in read dataset, for many
     sc:softwareHelp <http://wwwabi.snv.jussieu.fr/Yakusa/html/help_general.html> ;
     sc:url "http://wwwabi.snv.jussieu.fr/Yakusa/html/help_general.html" .
 
-<https://bio.tools/yalff_autogenerated> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_0196,
-        edam:topic_2885,
-        edam:topic_3168 ;
-    sc:citation <https://doi.org/10.1142/S0219720019400110>,
-        "pubmed:31856669" ;
-    sc:description """Indexing k-mers in linear space for quality value compression.
-
-YALFF (Yet Another Lossy FASTQ Filter) is a smoother for FASTQ files which uses an FM-Index to store the k-mer database. The compressed index greatly reduces the amount of memory required compared to other tools such as QUARTZ. This is because the dictionary of k-mers can be linearized into contigs.
-
-||| CORRECT NAME OF TOOL COULD ALSO BE 'memory-inefficient', 'compressibility', 'dictionaries', 'worsened'""" ;
-    sc:featureList edam:operation_0484,
-        edam:operation_0524,
-        edam:operation_3196,
-        edam:operation_3211,
-        edam:operation_3472 ;
+<https://bio.tools/yalla> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:citation <https://doi.org/10.1016/j.cels.2019.02.007> ;
+    sc:description "GPU-Powered Spheroid Models for Mesenchyme and Epithelium" ;
+    sc:isAccessibleForFree true ;
     sc:license "MIT" ;
-    sc:name "yalff_autogenerated" ;
-    sc:url "https://github.com/yhhshb/yalff" .
+    sc:name "yalla" ;
+    sc:softwareVersion "1.0" ;
+    sc:url "https://github.com/germannp/yalla" .
 
 <https://bio.tools/yamss> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0092,
@@ -498063,10 +531566,9 @@ YALFF (Yet Another Lossy FASTQ Filter) is a smoother for FASTQ files which uses
 
 <https://bio.tools/yank> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0849" ;
-            sc:name "Sequence record" ;
-            sc:sameAs "http://edamontology.org/data_0849" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0849" ;
+            sc:name "Sequence record" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3071 ;
     sc:citation <https://doi.org/10.1016/S0168-9525(00)02024-2>,
@@ -498096,7 +531598,7 @@ YALFF (Yet Another Lossy FASTQ Filter) is a smoother for FASTQ files which uses
     sc:url "http://emboss.open-bio.org/rel/rel6/apps/yank.html" .
 
 <https://bio.tools/yanocomp> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_3047,
@@ -498116,7 +531618,7 @@ YALFF (Yet Another Lossy FASTQ Filter) is a smoother for FASTQ files which uses
     sc:url "http://www.github.com/bartongroup/yanocomp" .
 
 <https://bio.tools/yaps> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0769,
         edam:topic_3500 ;
@@ -498133,7 +531635,7 @@ Welcome to the yaps repository. The yaps package is based on the original YAPS p
     sc:url "http://github.com/baktoft/yaps" .
 
 <https://bio.tools/yapsa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0199,
@@ -498157,7 +531659,7 @@ Welcome to the yaps repository. The yaps package is based on the original YAPS p
     biotools:primaryContact "Daniel Huebschmann" .
 
 <https://bio.tools/yaqcaffy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_0203,
@@ -498179,7 +531681,7 @@ Welcome to the yaps repository. The yaps package is based on the original YAPS p
     biotools:primaryContact "Laurent Gatto" .
 
 <https://bio.tools/yara> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0102 ;
     sc:citation <https://doi.org/10.1093/nar/gkt005> ;
@@ -498195,7 +531697,7 @@ Welcome to the yaps repository. The yaps package is based on the original YAPS p
     biotools:primaryContact "Enrico Siragusa" .
 
 <https://bio.tools/yarn> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_2269,
@@ -498219,7 +531721,7 @@ Welcome to the yaps repository. The yaps package is based on the original YAPS p
     biotools:primaryContact "Joseph N Paulson" .
 
 <https://bio.tools/yasara> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0602,
@@ -498243,7 +531745,7 @@ Welcome to the yaps repository. The yaps package is based on the original YAPS p
         "Yasara Support" .
 
 <https://bio.tools/yasra> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0196 ;
     sc:description "Performs comparative assembly of short reads using a reference genome, which can differ substantially from the genome being sequenced." ;
@@ -498254,7 +531756,7 @@ Welcome to the yaps repository. The yaps package is based on the original YAPS p
     sc:url "http://www.bx.psu.edu/miller_lab/" .
 
 <https://bio.tools/yass> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web service" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0622,
@@ -498274,7 +531776,7 @@ Welcome to the yaps repository. The yaps package is based on the original YAPS p
     biotools:primaryContact "Laurent Noe" .
 
 <https://bio.tools/yass-spike> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0632,
         edam:topic_0769,
         edam:topic_3474 ;
@@ -498290,7 +531792,7 @@ Yass ver. 2.0 has now been released and is available in the master branch.""" ;
     sc:url "https://github.com/paninski-lab/yass" .
 
 <https://bio.tools/yeast-deletion-library-tools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_3070 ;
     sc:citation <https://doi.org/10.1186/s12859-018-2212-4> ;
@@ -498307,14 +531809,13 @@ Yass ver. 2.0 has now been released and is available in the master branch.""" ;
 
 <https://bio.tools/yeast_gene_order_browser> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1026" ;
-            sc:name "Gene symbol" ;
-            sc:sameAs "http://edamontology.org/data_1026" ] ;
+            sc:additionalType "http://edamontology.org/data_1026" ;
+            sc:name "Gene symbol" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0916" ;
-            sc:name "Gene report" ;
-            sc:sameAs "http://edamontology.org/data_0916" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0916" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Gene report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0621 ;
@@ -498331,7 +531832,7 @@ Yass ver. 2.0 has now been released and is available in the master branch.""" ;
     sc:url "http://ygob.ucd.ie/" .
 
 <https://bio.tools/yeast_kid> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0602,
@@ -498353,7 +531854,7 @@ Yass ver. 2.0 has now been released and is available in the master branch.""" ;
         "Database interface related information" .
 
 <https://bio.tools/yeast_metaboliner> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0218,
@@ -498374,7 +531875,7 @@ Yass ver. 2.0 has now been released and is available in the master branch.""" ;
     biotools:primaryContact "Web Service" .
 
 <https://bio.tools/yeastgenome> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0621,
         edam:topic_3382,
@@ -498391,14 +531892,13 @@ Yass ver. 2.0 has now been released and is available in the master branch.""" ;
 
 <https://bio.tools/yeastgfp> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1807" ;
-            sc:name "ORF name" ;
-            sc:sameAs "http://edamontology.org/data_1807" ] ;
+            sc:additionalType "http://edamontology.org/data_1807" ;
+            sc:name "ORF name" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0916" ;
-            sc:name "Gene report" ;
-            sc:sameAs "http://edamontology.org/data_0916" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_0916" ;
+            sc:encodingFormat "http://edamontology.org/format_2331" ;
+            sc:name "Gene report" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0114,
         edam:topic_0621 ;
@@ -498413,8 +531913,24 @@ Yass ver. 2.0 has now been released and is available in the master branch.""" ;
     sc:softwareHelp <http://yeastgfp.yeastgenome.org/help.php> ;
     sc:url "http://yeastgfp.yeastgenome.org/" .
 
+<https://bio.tools/yeastmate> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_2229,
+        edam:topic_3382 ;
+    sc:citation <https://doi.org/10.1101/2021.10.13.464238> ;
+    sc:description "YeastMate is a tool for the automated detection and segmentation of S. cerevisae cells and their mating and budding events, as well as a subclassification of the cells involved in these events into mother and daughter cells." ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "YeastMate" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://yeastmate.readthedocs.io> ;
+    sc:url "https://github.com/hoerlteam/YeastMate" .
+
 <https://bio.tools/yeastnet> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_2229,
         edam:topic_3382 ;
@@ -498430,7 +531946,7 @@ YeastNet is a library for analysing live-cell fluorescence microscopy of budding
     sc:url "https://github.com/kaernlab/YeastNet" .
 
 <https://bio.tools/yeastract> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0204,
@@ -498451,7 +531967,7 @@ YeastNet is a library for analysing live-cell fluorescence microscopy of budding
     biotools:primaryContact "Contact Form" .
 
 <https://bio.tools/yeastract_plus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0204,
         edam:topic_0602,
@@ -498472,7 +531988,7 @@ YeastNet is a library for analysing live-cell fluorescence microscopy of budding
     sc:url "http://yeastract-plus.org/" .
 
 <https://bio.tools/yeaz> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_3315,
         edam:topic_3318,
@@ -498488,20 +532004,54 @@ Laboratory of the Physics of Biological Systems ‐ EPFL.""" ;
     sc:name "yeaz" ;
     sc:url "https://lpbs-nn.epfl.ch/" .
 
+<https://bio.tools/yevis-cli> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_0769 ;
+    sc:citation <https://doi.org/10.1101/2022.07.08.499265> ;
+    sc:description "CLI tool to support building and maintaining Yevis workflow registry." ;
+    sc:license "Apache-2.0" ;
+    sc:name "Yevis-cli" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://github.com/sapporo-wes/yevis-cli/blob/main/README.md>,
+        <https://sapporo-wes.github.io/yevis-cli/getting_started>,
+        <https://sapporo-wes.github.io/yevis-cli/getting_started_ja> ;
+    sc:softwareVersion "0.5.4" ;
+    sc:url "https://github.com/sapporo-wes/yevis-cli" .
+
+<https://bio.tools/yevis-web> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Web application" ;
+    sc:applicationSubCategory edam:topic_0769 ;
+    sc:citation <https://doi.org/10.1101/2022.07.08.499265> ;
+    sc:description "Web application for browsing Yevis workflow registry." ;
+    sc:license "Apache-2.0" ;
+    sc:name "Yevis-web" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <https://github.com/sapporo-wes/yevis-web/blob/main/README.md>,
+        <https://sapporo-wes.github.io/yevis-cli/getting_started>,
+        <https://sapporo-wes.github.io/yevis-cli/getting_started_ja> ;
+    sc:softwareVersion "1.2.1" ;
+    sc:url "https://github.com/sapporo-wes/yevis-web" .
+
 <https://bio.tools/yinoyang> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2044" ;
-            sc:name "Sequence" ;
-            sc:sameAs "http://edamontology.org/data_2044" ] ;
+            sc:additionalType "http://edamontology.org/data_2044" ;
+            sc:encodingFormat "http://edamontology.org/format_1929" ;
+            sc:name "Sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2955" ;
-            sc:name "Sequence report" ;
-            sc:sameAs "http://edamontology.org/data_2955" ],
+            sc:additionalType "http://edamontology.org/data_2955" ;
+            sc:encodingFormat "http://edamontology.org/format_2333" ;
+            sc:name "Sequence report" ],
         [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1277" ;
-            sc:name "Protein features" ;
-            sc:sameAs "http://edamontology.org/data_1277" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1277" ;
+            sc:encodingFormat "http://edamontology.org/format_2330" ;
+            sc:name "Protein features" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0160 ;
@@ -498519,7 +532069,7 @@ Laboratory of the Physics of Biological Systems ‐ EPFL.""" ;
     biotools:primaryContact "Ramneek Gupta" .
 
 <https://bio.tools/yloc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_3500 ;
     sc:citation "pubmed:20507917" ;
@@ -498535,7 +532085,7 @@ Laboratory of the Physics of Biological Systems ‐ EPFL.""" ;
     sc:url "https://abi-services.informatik.uni-tuebingen.de/yloc/webloc.cgi" .
 
 <https://bio.tools/yodel> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_3656 ;
     sc:citation <https://doi.org/10.12688/f1000research.11861.1> ;
@@ -498546,7 +532096,7 @@ Laboratory of the Physics of Biological Systems ‐ EPFL.""" ;
     sc:url "https://github.com/LancePalmerStJude/YODEL/" .
 
 <https://bio.tools/yogy> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_0621,
@@ -498564,7 +532114,7 @@ Laboratory of the Physics of Biological Systems ‐ EPFL.""" ;
     biotools:primaryContact "Jürg Bähler" .
 
 <https://bio.tools/yoripred> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_2269,
         edam:topic_3125,
@@ -498581,7 +532131,7 @@ In yORIpred, 40 optimal baseline models were constructed by exploring eight diff
     sc:url "http://thegleelab.org/yORIpred" .
 
 <https://bio.tools/youscope> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_3382,
         edam:topic_3383,
@@ -498597,7 +532147,7 @@ In yORIpred, 40 optimal baseline models were constructed by exploring eight diff
     sc:url "http://www.youscope.org/" .
 
 <https://bio.tools/youthu> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3299,
         edam:topic_3379,
@@ -498618,7 +532168,7 @@ In yORIpred, 40 optimal baseline models were constructed by exploring eight diff
     sc:url "https://ready4-dev.github.io/youthu" .
 
 <https://bio.tools/ypa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0621,
@@ -498641,10 +532191,9 @@ In yORIpred, 40 optimal baseline models were constructed by exploring eight diff
 
 <https://bio.tools/ypibp> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1009" ;
-            sc:name "Protein name" ;
-            sc:sameAs "http://edamontology.org/data_1009" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1009" ;
+            sc:name "Protein name" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0153,
@@ -498670,7 +532219,7 @@ In yORIpred, 40 optimal baseline models were constructed by exploring eight diff
     sc:url "http://cosbi7.ee.ncku.edu.tw/YPIBP/" .
 
 <https://bio.tools/yqfc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0121,
         edam:topic_0203,
         edam:topic_0602,
@@ -498688,7 +532237,7 @@ For each quantitative feature, YQFC provides three statistical tests (t-test, U
     sc:url "http://cosbi2.ee.ncku.edu.tw/YQFC/" .
 
 <https://bio.tools/yrbss> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0749,
         edam:topic_3305,
@@ -498706,7 +532255,7 @@ The Youth Risk Behavior Surveillance System (YRBSS) monitors six types of health
     sc:url "https://www.cdc.gov/healthyyouth/data/yrbs/index.htm" .
 
 <https://bio.tools/yrgate> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0114 ;
     sc:citation <https://doi.org/10.1186/gb-2006-7-7-r58>,
@@ -498723,7 +532272,7 @@ The Youth Risk Behavior Surveillance System (YRBSS) monitors six types of health
     sc:url "http://www.plantgdb.org/prj/yrGATE/" .
 
 <https://bio.tools/ysmr> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3382 ;
     sc:citation <https://doi.org/10.1186/S12859-020-3495-9>,
         "pmcid:PMC7191716",
@@ -498738,8 +532287,27 @@ the gaussian-sum finite impulse response filter used by YSMR.""" ;
     sc:name "YSMR" ;
     sc:url "https://github.com/schwanbeck/YSMR" .
 
+<https://bio.tools/yuzu> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Library" ;
+    sc:applicationSubCategory edam:topic_0102,
+        edam:topic_0199,
+        edam:topic_0632,
+        edam:topic_3474 ;
+    sc:citation <https://doi.org/10.1101/2021.11.08.467498> ;
+    sc:description "yuzu is a compressed-sensing based approach for quickly calculating in-silico mutagenesis saliency." ;
+    sc:featureList edam:operation_0307,
+        edam:operation_3435 ;
+    sc:isAccessibleForFree true ;
+    sc:license "MIT" ;
+    sc:name "Yuzu" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/kundajelab/yuzu" .
+
 <https://bio.tools/z-tree-unleashed> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_3361 ;
     sc:citation <https://doi.org/10.1016/J.JBEF.2020.100400>,
         "pmcid:PMC7485551",
@@ -498750,7 +532318,7 @@ the gaussian-sum finite impulse response filter used by YSMR.""" ;
     sc:url "https://cler1.gitlab.io/ztree-unleashed-doc/docs/home/" .
 
 <https://bio.tools/zagros> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0099,
@@ -498767,7 +532335,7 @@ the gaussian-sum finite impulse response filter used by YSMR.""" ;
     biotools:primaryContact "AD Smith" .
 
 <https://bio.tools/zclass> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0092,
@@ -498783,7 +532351,7 @@ the gaussian-sum finite impulse response filter used by YSMR.""" ;
     sc:url "http://www.uea.ac.uk/computing/zclass-zernike-class-" .
 
 <https://bio.tools/zcurve> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0622,
         edam:topic_0654,
@@ -498801,7 +532369,7 @@ the gaussian-sum finite impulse response filter used by YSMR.""" ;
     biotools:primaryContact "Feng-Biao Guo" .
 
 <https://bio.tools/zdock> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0082,
@@ -498817,7 +532385,7 @@ the gaussian-sum finite impulse response filter used by YSMR.""" ;
     sc:url "http://zlab.umassmed.edu/zdock/index.shtml" .
 
 <https://bio.tools/zdog> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_0602,
         edam:topic_0749,
@@ -498834,7 +532402,7 @@ the gaussian-sum finite impulse response filter used by YSMR.""" ;
     sc:url "https://github.com/rudi2013/ZDOG" .
 
 <https://bio.tools/zeal> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
@@ -498856,7 +532424,7 @@ the gaussian-sum finite impulse response filter used by YSMR.""" ;
         "Ingemar André" .
 
 <https://bio.tools/zebra2> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0130,
         edam:topic_0154,
         edam:topic_0623,
@@ -498878,7 +532446,7 @@ The Zebra parameters can be classified into three sections: (1) select positions
     sc:url "https://biokinet.belozersky.msu.ru/zebra2" .
 
 <https://bio.tools/zebra3d> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0821,
@@ -498901,7 +532469,7 @@ The Zebra parameters can be classified into three sections: (1) select positions
     biotools:primaryContact <https://orcid.org/0000-0002-7054-3487> .
 
 <https://bio.tools/zebrafish> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3383 ;
     sc:citation <https://doi.org/10.1186/s12859-018-2166-6> ;
@@ -498913,7 +532481,7 @@ The Zebra parameters can be classified into three sections: (1) select positions
     biotools:primaryContact "Darby Tien-Hao Chang" .
 
 <https://bio.tools/zebrashare> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0621,
         edam:topic_0625,
@@ -498933,19 +532501,30 @@ The Zebra parameters can be classified into three sections: (1) select positions
     biotools:primaryContact "April DeLaurier",
         "Jared C. Talbot" .
 
-<https://bio.tools/zenodo> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_2640,
-        edam:topic_3318,
-        edam:topic_3384 ;
-    sc:citation <https://doi.org/10.1002/MP.13789>,
-        "pubmed:31461537" ;
-    sc:description "> VERY_LOW CONFIDENCE! | > CORRECT NAME OF TOOL COULD ALSO BE 'kernels', 'dosimetry', 'dose', 'dose kernels' | Dose point kernels for 2,174 radionuclides | Dose point kernels for 2,174 radionuclides generated using MCNP v6.2. See accompanying article in Medical Physics for further details | February 13, 2019 Dataset Open Access | Graves, Stephen; Flynn, Ryan; Hyer, Daniel | [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.2564036.svg)](https://doi.org/10.5281/zenodo.2564036) | Cite all versions? You can cite all versions by using the DOI 10.5281/zenodo.2564035. This DOI represents all versions, and will always resolve to the latest one. Read more" ;
-    sc:featureList edam:operation_3431 ;
-    sc:name "zenodo" ;
-    sc:url "https://zenodo.org/record/2564036" .
+<https://bio.tools/zelda> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Plug-in" ;
+    sc:applicationSubCategory edam:topic_0769,
+        edam:topic_2229,
+        edam:topic_3168,
+        edam:topic_3172,
+        edam:topic_3382 ;
+    sc:citation <https://doi.org/10.1101/2021.10.24.465596> ;
+    sc:description "A 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari" ;
+    sc:featureList edam:operation_0337,
+        edam:operation_3436,
+        edam:operation_3443,
+        edam:operation_3799 ;
+    sc:isAccessibleForFree true ;
+    sc:license "BSD-3-Clause" ;
+    sc:name "ZELDA" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/RoccoDAnt/napari-zelda" .
 
 <https://bio.tools/zenofishdb> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0659,
         edam:topic_2640,
         edam:topic_3068,
@@ -498963,7 +532542,7 @@ Rapidly accumulating literature has proven feasibility of the zebrafish xenograf
     sc:url "https://konulab.shinyapps.io/zenofishdb" .
 
 <https://bio.tools/zerocostdl4mic> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0108,
         edam:topic_0607,
         edam:topic_3383,
@@ -498978,8 +532557,28 @@ ZeroCostDL4Mic is a toolbox for the training and implementation of common Deep L
     sc:name "ZeroCostDL4Mic" ;
     sc:url "https://github.com/HenriquesLab/ZeroCostDL4Mic/wiki" .
 
+<https://bio.tools/zetasuite> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Command-line tool" ;
+    sc:applicationSubCategory edam:topic_2640,
+        edam:topic_3170,
+        edam:topic_3308 ;
+    sc:citation <https://doi.org/10.1186/S13059-022-02729-4>,
+        "pmcid:PMC9310463",
+        "pubmed:35879727" ;
+    sc:description "Computational analysis of two-dimensional high-throughput data from multi-target screens and single-cell transcriptomics." ;
+    sc:featureList edam:operation_3435,
+        edam:operation_3501 ;
+    sc:isAccessibleForFree true ;
+    sc:license "Not licensed" ;
+    sc:name "ZetaSuite" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:url "https://github.com/YajingHao/ZetaSuite" .
+
 <https://bio.tools/zeus> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_2275 ;
     sc:description "A molecular visualization tool that supports PDB, MOL, MOL2/SYBYL and XYZ file formats. The rendering engine can output high quality molecular graphics." ;
@@ -498993,7 +532592,7 @@ ZeroCostDL4Mic is a toolbox for the training and implementation of common Deep L
     sc:url "http://www.al-nasir.com/www/Jamie/Zeus/" .
 
 <https://bio.tools/zfin> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0621,
@@ -499014,7 +532613,7 @@ ZeroCostDL4Mic is a toolbox for the training and implementation of common Deep L
     sc:url "http://zfin.org" .
 
 <https://bio.tools/zfishbook> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0199,
@@ -499032,7 +532631,7 @@ ZeroCostDL4Mic is a toolbox for the training and implementation of common Deep L
     biotools:primaryContact "Contact Form" .
 
 <https://bio.tools/zfn-scores> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0160,
         edam:topic_0196,
@@ -499048,7 +532647,7 @@ ZeroCostDL4Mic is a toolbox for the training and implementation of common Deep L
     sc:url "http://zinc.genomecenter.ucdavis.edu:8080/Plone/zfn-scoresv6" .
 
 <https://bio.tools/zfpkm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3170 ;
@@ -499072,7 +532671,7 @@ ZeroCostDL4Mic is a toolbox for the training and implementation of common Deep L
         "Ron Ammar" .
 
 <https://bio.tools/zga> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0622 ;
     sc:author <https://orcid.org/0000-0002-6023-228X> ;
@@ -499095,7 +532694,7 @@ No High Performance Computing needed. The pipeline works on laptop or desktop.""
     sc:url "https://github.com/laxeye/zga/" .
 
 <https://bio.tools/ziaq> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_0602,
         edam:topic_3170,
@@ -499112,7 +532711,7 @@ A statistical differential expression analysis method that accounts for both dro
     sc:url "https://github.com/gefeizhang/ZIAQ" .
 
 <https://bio.tools/zifit> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0196,
@@ -499132,7 +532731,7 @@ A statistical differential expression analysis method that accounts for both dro
     biotools:primaryContact "J.D. Sander" .
 
 <https://bio.tools/zika> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0218,
         edam:topic_0602,
         edam:topic_3071,
@@ -499149,7 +532748,7 @@ Zikv-CDB is a collaborative database. Our aim is to gather information about evi
     sc:url "http://www.zikaknowledgebase.eu" .
 
 <https://bio.tools/zikavid> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_0749,
         edam:topic_3512 ;
@@ -499161,7 +532760,7 @@ Zikv-CDB is a collaborative database. Our aim is to gather information about evi
     sc:url "https://zikavid.org" .
 
 <https://bio.tools/zinba> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Plug-in" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0092,
@@ -499182,7 +532781,7 @@ Zikv-CDB is a collaborative database. Our aim is to gather information about evi
         "Paul Giresi" .
 
 <https://bio.tools/zinbwave> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3168,
@@ -499203,7 +532802,7 @@ Zikv-CDB is a collaborative database. Our aim is to gather information about evi
     biotools:primaryContact "Davide Risso" .
 
 <https://bio.tools/zinc-express> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0203,
         edam:topic_3047,
@@ -499220,7 +532819,7 @@ Zikv-CDB is a collaborative database. Our aim is to gather information about evi
         <https://orcid.org/0000-0003-4616-7036> .
 
 <https://bio.tools/zinc20> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_2275,
         edam:topic_3047,
@@ -499239,7 +532838,7 @@ ZINC is a free database of commercially-available compounds for virtual screenin
     sc:url "http://zinc20.docking.org" .
 
 <https://bio.tools/zinc_finger_tools> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0078,
         edam:topic_0130,
@@ -499263,7 +532862,7 @@ ZINC is a free database of commercially-available compounds for virtual screenin
     biotools:primaryContact "Contact Form" .
 
 <https://bio.tools/zincidentifier> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0078 ;
     sc:citation <https://doi.org/10.1371/journal.pone.0049716> ;
@@ -499278,7 +532877,7 @@ ZINC is a free database of commercially-available compounds for virtual screenin
     biotools:primaryContact "Support" .
 
 <https://bio.tools/zinclick> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Database portal" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0209,
@@ -499297,7 +532896,7 @@ ZINC is a free database of commercially-available compounds for virtual screenin
     biotools:primaryContact "Alberto Massarotti" .
 
 <https://bio.tools/zincpharmer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0166,
@@ -499319,7 +532918,7 @@ ZINC is a free database of commercially-available compounds for virtual screenin
     biotools:primaryContact "ZINCPharmer Support" .
 
 <https://bio.tools/zinfandel> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0199,
         edam:topic_3053,
@@ -499333,7 +532932,7 @@ ZINC is a free database of commercially-available compounds for virtual screenin
     sc:url "http://www.cs.columbia.edu/~itsik/software/Zinfandel.html" .
 
 <https://bio.tools/zing> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_2275 ;
     sc:citation <https://doi.org/10.1093/BIOINFORMATICS/BTZ623>,
         "pmcid:PMC7523679",
@@ -499346,7 +532945,7 @@ ZINC is a free database of commercially-available compounds for virtual screenin
     sc:url "https://github.com/weng-lab/zing" .
 
 <https://bio.tools/ziphmm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Library" ;
     sc:applicationSubCategory edam:topic_3316 ;
     sc:description "Library for very fast likelihood computations for hidden Markov models." ;
@@ -499362,7 +532961,7 @@ ZINC is a free database of commercially-available compounds for virtual screenin
     biotools:primaryContact "Andreas Sand Pedersen" .
 
 <https://bio.tools/zisland_explorer> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0622,
@@ -499377,18 +532976,8 @@ ZINC is a free database of commercially-available compounds for virtual screenin
     sc:softwareHelp <http://cefg.uestc.edu.cn/Zisland_Explorer/guide.html> ;
     sc:url "http://cefg.uestc.edu.cn/Zisland_Explorer/" .
 
-<https://bio.tools/zk881ps0522> a sc:SoftwareApplication ;
-    sc:applicationSubCategory edam:topic_3067,
-        edam:topic_3304,
-        edam:topic_3314 ;
-    sc:citation <https://doi.org/10.1038/S41562-019-0678-3>,
-        "pubmed:31451738" ;
-    sc:description "> MEDIUM CONFIDENCE! | > CORRECT NAME OF TOOL COULD ALSO BE 'electrocorticographic', 'implanted', 'amplifiers', 'implanted electrocorticographic' | A library of human electrocorticographic data and analyses | A library of human electrocorticographic data and analyses in SearchWorks catalog | Stanford Libraries' official online search tool for books, media, journals, databases, government documents and more | Reporting from: https://searchworks.stanford.edu/view/zk881ps0522 | Electrophysiological data from implanted electrodes in the human brain are rare, and therefore scientific access to it has remained somewhat exclusive" ;
-    sc:name "zk881ps0522" ;
-    sc:url "https://searchworks.stanford.edu/view/zk881ps0522" .
-
 <https://bio.tools/zlibbioc> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool",
         "Library" ;
     sc:applicationSubCategory edam:topic_3372,
@@ -499409,7 +532998,7 @@ ZINC is a free database of commercially-available compounds for virtual screenin
     biotools:primaryContact "BioConductor Package Maintainer" .
 
 <https://bio.tools/zmm> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0077,
         edam:topic_0078,
@@ -499426,7 +533015,7 @@ ZINC is a free database of commercially-available compounds for virtual screenin
     sc:url "http://www.zmmsoft.com/" .
 
 <https://bio.tools/zodiac> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0602,
         edam:topic_2640,
@@ -499442,7 +533031,7 @@ ZINC is a free database of commercially-available compounds for virtual screenin
     biotools:primaryContact "Support" .
 
 <https://bio.tools/zodiac-ms> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0780,
         edam:topic_3047,
@@ -499460,14 +533049,14 @@ ZINC is a free database of commercially-available compounds for virtual screenin
 
 <https://bio.tools/zoom> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0848" ;
-            sc:name "Raw sequence" ;
-            sc:sameAs "http://edamontology.org/data_0848" ] ;
+            sc:additionalType "http://edamontology.org/data_0848" ;
+            sc:encodingFormat "http://edamontology.org/format_2571" ;
+            sc:name "Raw sequence" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_1274" ;
-            sc:name "Map" ;
-            sc:sameAs "http://edamontology.org/data_1274" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_1274" ;
+            sc:encodingFormat "http://edamontology.org/format_2060" ;
+            sc:name "Map" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Desktop application" ;
     sc:applicationSubCategory edam:topic_0102,
         edam:topic_0622,
@@ -499487,14 +533076,12 @@ ZINC is a free database of commercially-available compounds for virtual screenin
 
 <https://bio.tools/zooma> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_0968" ;
-            sc:name "Keyword" ;
-            sc:sameAs "http://edamontology.org/data_0968" ] ;
+            sc:additionalType "http://edamontology.org/data_0968" ;
+            sc:name "Keyword" ] ;
     bsc:output [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_3509" ;
-            sc:name "Ontology mapping" ;
-            sc:sameAs "http://edamontology.org/data_3509" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_3509" ;
+            sc:name "Ontology mapping" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0089,
         edam:topic_2259,
@@ -499518,7 +533105,7 @@ ZINC is a free database of commercially-available compounds for virtual screenin
     biotools:primaryContact <http://orcid.org/0000-0002-2513-5396> .
 
 <https://bio.tools/zoomout> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0128,
         edam:topic_0602,
@@ -499536,10 +533123,9 @@ ZINC is a free database of commercially-available compounds for virtual screenin
 
 <https://bio.tools/zoomqa> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2976" ;
-            sc:name "Protein sequence" ;
-            sc:sameAs "http://edamontology.org/data_2976" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2976" ;
+            sc:name "Protein sequence" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0154,
         edam:topic_0166,
@@ -499561,7 +533147,7 @@ ZINC is a free database of commercially-available compounds for virtual screenin
     sc:url "http://zoomQA.renzhitech.com" .
 
 <https://bio.tools/zorro> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0622 ;
     sc:citation <https://doi.org/10.1186/s13059-017-1213-3> ;
@@ -499576,8 +533162,31 @@ ZINC is a free database of commercially-available compounds for virtual screenin
         "Marcelo Carazzole",
         "Ramon Vidal" .
 
+<https://bio.tools/zover> a sc:SoftwareApplication ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    sc:additionalType "Database portal",
+        "Web application" ;
+    sc:applicationSubCategory edam:topic_0621,
+        edam:topic_0781,
+        edam:topic_3305,
+        edam:topic_3324,
+        edam:topic_3500 ;
+    sc:citation <https://doi.org/10.1093/NAR/GKAB862>,
+        "pmcid:PMC8728136",
+        "pubmed:34634795" ;
+    sc:description "The database of zoonotic and vector-borne viruses." ;
+    sc:featureList edam:operation_0324,
+        edam:operation_2421 ;
+    sc:isAccessibleForFree true ;
+    sc:name "ZOVER" ;
+    sc:operatingSystem "Linux",
+        "Mac",
+        "Windows" ;
+    sc:softwareHelp <http://www.mgc.ac.cn/cgi-bin/ZOVER/howto.cgi> ;
+    sc:url "http://www.mgc.ac.cn/ZOVER" .
+
 <https://bio.tools/zpicture_multi> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0203,
@@ -499598,7 +533207,7 @@ ZINC is a free database of commercially-available compounds for virtual screenin
     biotools:primaryContact "Lisa Stubbs" .
 
 <https://bio.tools/zplan> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3524 ;
     sc:citation <https://doi.org/10.1111/j.1439-0388.2007.00713.x> ;
@@ -499612,10 +533221,9 @@ ZINC is a free database of commercially-available compounds for virtual screenin
 
 <https://bio.tools/zt> a sc:SoftwareApplication ;
     bsc:input [ a bsct:FormalParameter ;
-            sc:identifier "http://edamontology.org/data_2082" ;
-            sc:name "Matrix" ;
-            sc:sameAs "http://edamontology.org/data_2082" ] ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+            sc:additionalType "http://edamontology.org/data_2082" ;
+            sc:name "Matrix" ] ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_3473 ;
     sc:citation <https://doi.org/10.18637/jss.v007.i10> ;
@@ -499632,7 +533240,7 @@ ZINC is a free database of commercially-available compounds for virtual screenin
     sc:url "http://bioinformatics.psb.ugent.be/software/details/ZT" .
 
 <https://bio.tools/zumis> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Command-line tool" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_0102,
@@ -499650,7 +533258,7 @@ ZINC is a free database of commercially-available compounds for virtual screenin
         "Swati Parekh" .
 
 <https://bio.tools/zwa> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Script" ;
     sc:applicationSubCategory edam:topic_0196,
         edam:topic_0659,
@@ -499673,12 +533281,12 @@ ZINC is a free database of commercially-available compounds for virtual screenin
     sc:url "https://github.com/ndovro/ZWA/" .
 
 <https://bio.tools/zygprob> a sc:SoftwareApplication ;
-    dcterms:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
+    dct:conformsTo "https://bioschemas.org/profiles/ComputationalTool/0.6-DRAFT" ;
     sc:additionalType "Web application" ;
     sc:applicationSubCategory edam:topic_0080,
         edam:topic_2269,
         edam:topic_3053 ;
-    sc:citation "pubmed:1661148" ;
+    sc:citation <https://doi.org/10.1375/twin.9.2.194> ;
     sc:description "Processes convenient and accurate zygosity probability calculation." ;
     sc:featureList edam:operation_0236 ;
     sc:name "ZygProb" ;
@@ -499688,709 +533296,709 @@ ZINC is a free database of commercially-available compounds for virtual screenin
     sc:softwareHelp <https://neurogenetics.qimrberghofer.edu.au/ZygProb/> ;
     sc:url "http://neurogenetics.qimrberghofer.edu.au/ZygProb/" .
 
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+<https://orcid.org/0000-0003-4679-0557> a <schema:Person> .
 
-<https://orcid.org/0000-0003-4956-2429> a schema:Person .
+<https://orcid.org/0000-0003-4739-5110> a <schema:Person> .
 
-<http://orcid.org/0000-0001-5902-6238> a schema:Person .
+<https://orcid.org/0000-0003-4956-2429> a <schema:Person> .
 
-<http://orcid.org/0000-0001-9221-2892> a schema:Person .
+<http://orcid.org/0000-0001-5902-6238> a <schema:Person> .
 
-<http://orcid.org/0000-0001-9564-7525> a schema:Person .
+<http://orcid.org/0000-0001-9221-2892> a <schema:Person> .
 
-<http://orcid.org/0000-0002-0468-0117> a schema:Person .
+<http://orcid.org/0000-0001-9564-7525> a <schema:Person> .
 
-<http://orcid.org/0000-0002-1520-2268> a schema:Person .
+<http://orcid.org/0000-0002-0468-0117> a <schema:Person> .
 
-<http://orcid.org/0000-0002-1669-6482> a schema:Person .
+<http://orcid.org/0000-0002-1520-2268> a <schema:Person> .
 
-<http://orcid.org/0000-0002-3729-8176> a schema:Person .
+<http://orcid.org/0000-0002-1669-6482> a <schema:Person> .
 
-<http://orcid.org/0000-0002-8291-8071> a schema:Person .
+<http://orcid.org/0000-0002-3729-8176> a <schema:Person> .
 
-<http://orcid.org/0000-0002-8886-7797> a schema:Person .
+<http://orcid.org/0000-0002-8291-8071> a <schema:Person> .
 
-<http://orcid.org/0000-0002-9412-9643> a schema:Person .
+<http://orcid.org/0000-0002-8886-7797> a <schema:Person> .
 
-<http://orcid.org/0000-0003-1471-1295> a schema:Person .
+<http://orcid.org/0000-0002-9412-9643> a <schema:Person> .
 
-<http://orcid.org/0000-0003-1678-7410> a schema:Person .
+<http://orcid.org/0000-0003-1471-1295> a <schema:Person> .
 
-<http://orcid.org/0000-0003-2861-5552> a schema:Person .
+<http://orcid.org/0000-0003-1678-7410> a <schema:Person> .
 
-<http://orcid.org/0000-0003-4327-3730> a schema:Person .
+<http://orcid.org/0000-0003-2861-5552> a <schema:Person> .
 
-<http://orcid.org/0000-0003-4874-2874> a schema:Person .
+<http://orcid.org/0000-0003-4327-3730> a <schema:Person> .
+
+<http://orcid.org/0000-0003-4874-2874> a <schema:Person> .
 
 <https://doi.org/10.1002/0471250953.bi1112s47> a sc:CreativeWork .
 
@@ -538414,6 +575817,8 @@ ZINC is a free database of commercially-available compounds for virtual screenin
 
 <https://doi.org/10.1016/0196-8858(91)90017-D> a sc:CreativeWork .
 
+<https://doi.org/10.1016/j.csbj.2022.03.042> a sc:CreativeWork .
+
 <https://doi.org/10.1016/j.drudis.2012.05.016> a sc:CreativeWork .
 
 <https://doi.org/10.1038/hortres.2016.56> a sc:CreativeWork .
@@ -538426,8 +575831,6 @@ ZINC is a free database of commercially-available compounds for virtual screenin
 
 <https://doi.org/10.1038/nmeth.4463> a sc:CreativeWork .
 
-<https://doi.org/10.1093/BIOINFORMATICS/BTZ718> a sc:CreativeWork .
-
 <https://doi.org/10.1093/bioinformatics/bti310> a sc:CreativeWork .
 
 <https://doi.org/10.1093/bioinformatics/bti325> a sc:CreativeWork .
@@ -538462,6 +575865,8 @@ ZINC is a free database of commercially-available compounds for virtual screenin
 
 <https://doi.org/10.1101/gr.111120.110> a sc:CreativeWork .
 
+<https://doi.org/10.1186/1758-2946-5-39> a sc:CreativeWork .
+
 <https://doi.org/10.1186/s13059-018-1491-4> a sc:CreativeWork .
 
 <https://doi.org/10.1371/journal.pcbi.1004751> a sc:CreativeWork .
@@ -538472,71 +575877,79 @@ ZINC is a free database of commercially-available compounds for virtual screenin
 
 <https://doi.org/10.5281/zenodo.263965> a sc:CreativeWork .
 
-<https://orcid.org/0000-0001-5444-9282> a schema:Person .
+<https://orcid.org/0000-0001-5352-069X> a <schema:Person> .
 
-<https://orcid.org/0000-0001-5801-5510> a schema:Person .
+<https://orcid.org/0000-0001-5444-9282> a <schema:Person> .
 
-<https://orcid.org/0000-0001-6046-610X> a schema:Person .
+<https://orcid.org/0000-0001-5801-5510> a <schema:Person> .
 
-<https://orcid.org/0000-0001-7032-5220> a schema:Person .
+<https://orcid.org/0000-0001-6046-610X> a <schema:Person> .
 
-<https://orcid.org/0000-0001-7227-2580> a schema:Person .
+<https://orcid.org/0000-0001-7032-5220> a <schema:Person> .
 
-<https://orcid.org/0000-0001-9358-4081> a schema:Person .
+<https://orcid.org/0000-0001-7227-2580> a <schema:Person> .
 
-<https://orcid.org/0000-0001-9441-9539> a schema:Person .
+<https://orcid.org/0000-0001-9046-6370> a <schema:Person> .
 
-<https://orcid.org/0000-0002-0188-1394> a schema:Person .
+<https://orcid.org/0000-0001-9358-4081> a <schema:Person> .
 
-<https://orcid.org/0000-0002-0566-7723> a schema:Person .
+<https://orcid.org/0000-0001-9441-9539> a <schema:Person> .
 
-<https://orcid.org/0000-0002-1215-167X> a schema:Person .
+<https://orcid.org/0000-0002-0188-1394> a <schema:Person> .
 
-<https://orcid.org/0000-0002-1441-6512> a schema:Person .
+<https://orcid.org/0000-0002-0566-7723> a <schema:Person> .
 
-<https://orcid.org/0000-0002-3093-5873> a schema:Person .
+<https://orcid.org/0000-0002-1126-1535> a <schema:Person> .
 
-<https://orcid.org/0000-0002-3597-8557> a schema:Person .
+<https://orcid.org/0000-0002-1215-167X> a <schema:Person> .
 
-<https://orcid.org/0000-0002-3986-7686> a schema:Person .
+<https://orcid.org/0000-0002-1441-6512> a <schema:Person> .
 
-<https://orcid.org/0000-0002-6476-7206> a schema:Person .
+<https://orcid.org/0000-0002-3093-5873> a <schema:Person> .
 
-<https://orcid.org/0000-0002-6687-7169> a schema:Person .
+<https://orcid.org/0000-0002-3597-8557> a <schema:Person> .
 
-<https://orcid.org/0000-0002-7139-2107> a schema:Person .
+<https://orcid.org/0000-0002-3986-7686> a <schema:Person> .
 
-<https://orcid.org/0000-0002-7575-2085> a schema:Person .
+<https://orcid.org/0000-0002-6173-7255> a <schema:Person> .
 
-<https://orcid.org/0000-0002-8077-4692> a schema:Person .
+<https://orcid.org/0000-0002-6476-7206> a <schema:Person> .
 
-<https://orcid.org/0000-0002-8689-2083> a schema:Person .
+<https://orcid.org/0000-0002-6687-7169> a <schema:Person> .
 
-<https://orcid.org/0000-0002-8902-2876> a schema:Person .
+<https://orcid.org/0000-0002-7139-2107> a <schema:Person> .
 
-<https://orcid.org/0000-0002-9903-4248> a schema:Person .
+<https://orcid.org/0000-0002-7575-2085> a <schema:Person> .
 
-<https://orcid.org/0000-0003-0045-0872> a schema:Person .
+<https://orcid.org/0000-0002-8077-4692> a <schema:Person> .
 
-<https://orcid.org/0000-0003-1429-7485> a schema:Person .
+<https://orcid.org/0000-0002-8689-2083> a <schema:Person> .
 
-<https://orcid.org/0000-0003-2948-2413> a schema:Person .
+<https://orcid.org/0000-0002-8902-2876> a <schema:Person> .
 
-<https://orcid.org/0000-0003-3645-1455> a schema:Person .
+<https://orcid.org/0000-0002-9903-4248> a <schema:Person> .
 
-<http://orcid.org/0000-0001-8781-9753> a schema:Person .
+<https://orcid.org/0000-0003-0045-0872> a <schema:Person> .
 
-<http://orcid.org/0000-0002-0282-0462> a schema:Person .
+<https://orcid.org/0000-0003-1429-7485> a <schema:Person> .
 
-<http://orcid.org/0000-0002-1390-0708> a schema:Person .
+<https://orcid.org/0000-0003-2948-2413> a <schema:Person> .
 
-<http://orcid.org/0000-0002-2691-9950> a schema:Person .
+<https://orcid.org/0000-0003-3645-1455> a <schema:Person> .
 
-<http://orcid.org/0000-0002-3564-4813> a schema:Person .
+<http://orcid.org/0000-0001-8781-9753> a <schema:Person> .
 
-<http://orcid.org/0000-0002-7684-0079> a schema:Person .
+<http://orcid.org/0000-0002-0282-0462> a <schema:Person> .
 
-<http://orcid.org/0000-0003-0086-0687> a schema:Person .
+<http://orcid.org/0000-0002-1390-0708> a <schema:Person> .
+
+<http://orcid.org/0000-0002-2691-9950> a <schema:Person> .
+
+<http://orcid.org/0000-0002-3564-4813> a <schema:Person> .
+
+<http://orcid.org/0000-0002-7684-0079> a <schema:Person> .
+
+<http://orcid.org/0000-0003-0086-0687> a <schema:Person> .
 
 <https://doi.org/10.1007/978-1-0716-0159-4_12> a sc:CreativeWork .
 
@@ -538574,45 +575987,57 @@ ZINC is a free database of commercially-available compounds for virtual screenin
 
 <https://doi.org/10.3835/plantgenome2015.06.0038> a sc:CreativeWork .
 
-<https://orcid.org/0000-0001-5145-0384> a schema:Person .
+<https://orcid.org/0000-0001-5145-0384> a <schema:Person> .
+
+<https://orcid.org/0000-0001-6548-709X> a <schema:Person> .
+
+<https://orcid.org/0000-0001-7484-6031> a <schema:Person> .
+
+<https://orcid.org/0000-0001-9017-591X> a <schema:Person> .
+
+<https://orcid.org/0000-0001-9373-7930> a <schema:Person> .
+
+<https://orcid.org/0000-0001-9989-2720> a <schema:Person> .
 
-<https://orcid.org/0000-0001-6548-709X> a schema:Person .
+<https://orcid.org/0000-0002-0296-2452> a <schema:Person> .
 
-<https://orcid.org/0000-0001-7484-6031> a schema:Person .
+<https://orcid.org/0000-0002-0984-9946> a <schema:Person> .
 
-<https://orcid.org/0000-0001-9017-591X> a schema:Person .
+<https://orcid.org/0000-0002-1287-8019> a <schema:Person> .
 
-<https://orcid.org/0000-0001-9373-7930> a schema:Person .
+<https://orcid.org/0000-0002-3321-7471> a <schema:Person> .
 
-<https://orcid.org/0000-0001-9989-2720> a schema:Person .
+<https://orcid.org/0000-0002-3859-3249> a <schema:Person> .
 
-<https://orcid.org/0000-0002-3321-7471> a schema:Person .
+<https://orcid.org/0000-0002-4022-8531> a <schema:Person> .
 
-<https://orcid.org/0000-0002-3859-3249> a schema:Person .
+<https://orcid.org/0000-0002-6800-4425> a <schema:Person> .
 
-<https://orcid.org/0000-0002-4022-8531> a schema:Person .
+<https://orcid.org/0000-0002-6904-1017> a <schema:Person> .
 
-<https://orcid.org/0000-0002-6904-1017> a schema:Person .
+<https://orcid.org/0000-0002-7038-544X> a <schema:Person> .
 
-<https://orcid.org/0000-0002-7038-544X> a schema:Person .
+<https://orcid.org/0000-0003-1015-9923> a <schema:Person> .
 
-<https://orcid.org/0000-0003-1678-7410> a schema:Person .
+<https://orcid.org/0000-0003-1678-7410> a <schema:Person> .
 
-<https://orcid.org/0000-0003-2116-3880> a schema:Person .
+<https://orcid.org/0000-0003-1777-9084> a <schema:Person> .
 
-<https://orcid.org/0000-0003-2715-335X> a schema:Person .
+<https://orcid.org/0000-0003-2116-3880> a <schema:Person> .
 
-<https://orcid.org/0000-0003-2980-4400> a schema:Person .
+<https://orcid.org/0000-0003-2715-335X> a <schema:Person> .
 
-<https://orcid.org/0000-0003-3663-0859> a schema:Person .
+<https://orcid.org/0000-0003-2980-4400> a <schema:Person> .
 
-<https://orcid.org/0000-0003-4525-7793> a schema:Person .
+<https://orcid.org/0000-0003-3663-0859> a <schema:Person> .
 
-<http://orcid.org/0000-0002-6245-8071> a schema:Person .
+<https://orcid.org/0000-0003-4525-7793> a <schema:Person> .
 
-<http://orcid.org/0000-0002-6485-8781> a schema:Person .
+<http://orcid.org/0000-0002-6245-8071> a <schema:Person> .
 
-<http://orcid.org/0000-0003-4216-2721> a schema:Person .
+<http://orcid.org/0000-0002-6485-8781> a <schema:Person> .
+
+<http://orcid.org/0000-0003-4216-2721> a <schema:Person> .
 
 <https://doi.org/10.1016/j.ygeno.2017.03.001> a sc:CreativeWork .
 
@@ -538630,30 +576055,35 @@ ZINC is a free database of commercially-available compounds for virtual screenin
 
 <https://doi.org/10.1093/nar/gkx1003> a sc:CreativeWork .
 
-<https://orcid.org/0000-0001-8718-7493> a schema:Person .
+<https://orcid.org/0000-0001-8718-7493> a <schema:Person> .
 
-<https://orcid.org/0000-0002-0084-6116> a schema:Person .
+<https://orcid.org/0000-0002-0084-6116> a <schema:Person> .
 
-<https://orcid.org/0000-0002-2605-5080> a schema:Person .
+<https://orcid.org/0000-0002-2605-5080> a <schema:Person> .
 
-<https://orcid.org/0000-0003-1033-9895> a schema:Person .
+<https://orcid.org/0000-0002-7502-7545> a <schema:Person> .
 
-<http://orcid.org/0000-0001-7032-5650> a schema:Person .
+<https://orcid.org/0000-0003-1033-9895> a <schema:Person> .
 
-<http://orcid.org/0000-0001-7786-2109> a schema:Person .
+<https://orcid.org/0000-0003-4099-9421> a <schema:Person> .
 
-<http://orcid.org/0000-0002-7395-8709> a schema:Person .
+<http://orcid.org/0000-0001-7032-5650> a <schema:Person> .
 
-<https://orcid.org/0000-0003-1711-7961> a schema:Person .
+<http://orcid.org/0000-0001-7786-2109> a <schema:Person> .
 
-<https://orcid.org/0000-0003-1849-1269> a schema:Person,
-        <schema:Person> .
+<http://orcid.org/0000-0002-7395-8709> a <schema:Person> .
+
+<https://orcid.org/0000-0002-0740-6324> a <schema:Person> .
+
+<https://orcid.org/0000-0003-1711-7961> a <schema:Person> .
+
+<https://orcid.org/0000-0003-1849-1269> a <schema:Person> .
 
-<http://orcid.org/0000-0002-0474-2218> a schema:Person .
+<http://orcid.org/0000-0002-0474-2218> a <schema:Person> .
 
-<http://orcid.org/0000-0002-2323-0963> a schema:Person .
+<http://orcid.org/0000-0002-2323-0963> a <schema:Person> .
 
-<http://orcid.org/0000-0002-8209-173X> a schema:Person .
+<http://orcid.org/0000-0002-8209-173X> a <schema:Person> .
 
 <https://doi.org/10.1038/npre.2011.6107> a sc:CreativeWork .
 
@@ -538661,7 +576091,7 @@ ZINC is a free database of commercially-available compounds for virtual screenin
 
 <https://doi.org/10.6084/m9.figshare.1425030.v1> a sc:CreativeWork .
 
-<http://orcid.org/0000-0003-4525-7793> a schema:Person .
+<http://orcid.org/0000-0003-4525-7793> a <schema:Person> .
 
 <https://doi.org/10.1016/S0022-2836(05)80360-2> a sc:CreativeWork .
 
@@ -538669,11 +576099,11 @@ ZINC is a free database of commercially-available compounds for virtual screenin
 
 <https://doi.org/10.1093/bioinformatics/bts311> a sc:CreativeWork .
 
-<https://orcid.org/0000-0002-1541-042X> a schema:Person .
+<https://orcid.org/0000-0002-1541-042X> a <schema:Person> .
 
-<https://orcid.org/0000-0002-7502-3157> a schema:Person .
+<https://orcid.org/0000-0002-7502-3157> a <schema:Person> .
 
-<https://orcid.org/0000-0003-2707-7940> a schema:Person .
+<https://orcid.org/0000-0003-2707-7940> a <schema:Person> .
 
 <https://doi.org/10.1038/ng.806> a sc:CreativeWork .
 
@@ -538683,11 +576113,11 @@ ZINC is a free database of commercially-available compounds for virtual screenin
 
 <https://doi.org/10.1186/1471-2105-14-184> a sc:CreativeWork .
 
-<https://orcid.org/0000-0001-9677-5078> a schema:Person .
+<https://orcid.org/0000-0001-9677-5078> a <schema:Person> .
 
-<https://orcid.org/0000-0002-6803-0340> a schema:Person .
+<https://orcid.org/0000-0002-6803-0340> a <schema:Person> .
 
-<https://orcid.org/0000-0002-8799-8584> a schema:Person .
+<https://orcid.org/0000-0002-8799-8584> a <schema:Person> .
 
 <https://doi.org/10.1038/s41587-020-0439-x> a sc:CreativeWork .
 
@@ -538695,33 +576125,37 @@ ZINC is a free database of commercially-available compounds for virtual screenin
 
 <https://doi.org/10.1186/1471-2164-15-264> a sc:CreativeWork .
 
-<http://orcid.org/0000-0001-7885-4311> a schema:Person .
+<http://orcid.org/0000-0001-7885-4311> a <schema:Person> .
 
 <https://doi.org/10.1093/bioinformatics/btp352> a sc:CreativeWork .
 
-<https://orcid.org/0000-0002-0222-4273> a schema:Person .
+<https://orcid.org/0000-0003-0513-0288> a <schema:Person> .
 
-<https://orcid.org/0000-0003-0513-0288> a schema:Person .
+<https://orcid.org/0000-0003-1980-3148> a <schema:Person> .
 
-<https://orcid.org/0000-0003-1980-3148> a schema:Person .
-
-<https://orcid.org/0000-0003-3139-3700> a schema:Person .
+<https://orcid.org/0000-0003-3139-3700> a <schema:Person> .
 
 <https://doi.org/10.1186/1471-2164-15-1039> a sc:CreativeWork .
 
-<https://orcid.org/0000-0003-4101-2502> a schema:Person .
+<https://orcid.org/0000-0001-8468-2050> a <schema:Person> .
+
+<https://orcid.org/0000-0002-0222-4273> a <schema:Person> .
 
-<https://orcid.org/0000-0003-2827-9261> a schema:Person .
+<https://orcid.org/0000-0003-4101-2502> a <schema:Person> .
+
+<https://orcid.org/0000-0003-2827-9261> a <schema:Person> .
 
 <https://doi.org/10.1038/s41597-019-0177-4> a sc:CreativeWork .
 
-<https://orcid.org/0000-0002-7848-8216> a schema:Person .
+<https://orcid.org/0000-0002-7848-8216> a <schema:Person> .
+
+<http://orcid.org/0000-0001-7369-1322> a <schema:Organization> .
 
-<http://orcid.org/0000-0001-7369-1322> a schema:Organization .
+<https://doi.org/10.1093/nar/gkac240> a sc:CreativeWork .
 
-<http://orcid.org/0000-0001-8231-3323> a schema:Person .
+<http://orcid.org/0000-0001-8231-3323> a <schema:Person> .
 
-<https://orcid.org/0000-0002-8291-8071> a schema:Person .
+<https://orcid.org/0000-0002-8291-8071> a <schema:Person> .
 
 <https://doi.org/10.1093/nar/gkv1157> a sc:CreativeWork .
 
diff --git a/config.py b/config.py
index ccf6d0ae..8c39e471 100644
--- a/config.py
+++ b/config.py
@@ -10,6 +10,7 @@ class Config(object):
     # You have to config your apikey for bioportal in a separate .env file that must not be in git
     # e.g. BIOPORTAL_APIKEY='xxxxxx-xxxxx-xxxx-xxxx-xxxxxxxx'
     BIOPORTAL_APIKEY = environ.get("BIOPORTAL_APIKEY")
+    GITHUB_TOKEN = environ.get("GITHUB_TOKEN")
     DEBUG = False
     TESTING = False
     # SERVER_NAME = "0.0.0.0:5000"
diff --git a/environment.yml b/environment.yml
index 2daf708d..818e2ced 100644
--- a/environment.yml
+++ b/environment.yml
@@ -9,7 +9,7 @@ dependencies:
   - Flask-Cors==3.0.10
   - Flask-SocketIO==5.1.1
   - Flask-Caching==1.10.1
-  - rdflib==6.1.1
+  - rdflib==6.2.0
   - rich==10.12.0
   - pyshacl==0.17.3
   - selenium==3.141.0
@@ -33,5 +33,6 @@ dependencies:
   - sphinx_rtd_theme
   - APScheduler
   - werkzeug==2.0.3
+  - pyyaml
   - pip:
-    - extruct==0.13.0
+      - extruct==0.13.0
diff --git a/launch_dev.sh b/launch_dev.sh
index 9e9c908d..87a4134e 100755
--- a/launch_dev.sh
+++ b/launch_dev.sh
@@ -2,7 +2,25 @@
 echo "ENV is set to: "
 export FLASK_ENV=development
 printenv FLASK_ENV
+
+if [ "$1" = 'bs_update' ]
+then
+    update=True
+else
+    update=False
+fi
+
+echo $1
+echo $update
+
+# exec gunicorn 'app:app(update="$update")'
 #exec source activate fair-checker-webapp
-exec gunicorn -b 0.0.0.0:5000 --reload --access-logfile - --error-logfile - app:app --worker-class eventlet -w 1
+exec gunicorn -b 0.0.0.0:5000 \
+--reload \
+--access-logfile \
+- --error-logfile - app:app \
+--worker-class eventlet \
+-w 1 \
+--timeout 120
 # supervisord -c supervisord.conf
 #exec source activate fair-checker-webapp && python3 app.py
diff --git a/metrics/FAIRMetricsFactory.py b/metrics/FAIRMetricsFactory.py
index 61444d89..fec4e7d1 100644
--- a/metrics/FAIRMetricsFactory.py
+++ b/metrics/FAIRMetricsFactory.py
@@ -36,7 +36,7 @@ def get_metric(
 
     @staticmethod
     def get_FC_metrics():
-        fc_metrics_list = {
+        fc_metrics = {
             F1A_Impl().get_name(): F1A_Impl(),
             F1B_Impl().get_name(): F1B_Impl(),
             F2A_Impl().get_name(): F2A_Impl(),
@@ -49,6 +49,23 @@ def get_FC_metrics():
             R12_Impl().get_name(): R12_Impl(),
             R13_Impl().get_name(): R13_Impl(),
         }
+        return fc_metrics
+
+    @staticmethod
+    def get_FC_impl(web_resource=None):
+        fc_metrics_list = [
+            F1A_Impl(web_resource),
+            F1B_Impl(web_resource),
+            F2A_Impl(web_resource),
+            F2B_Impl(web_resource),
+            A11_Impl(web_resource),
+            I1_Impl(web_resource),
+            I2_Impl(web_resource),
+            I3_Impl(web_resource),
+            R11_Impl(web_resource),
+            R12_Impl(web_resource),
+            R13_Impl(web_resource),
+        ]
         return fc_metrics_list
 
     @staticmethod
diff --git a/metrics/FairCheckerExceptions.py b/metrics/FairCheckerExceptions.py
index 301b8e4d..3c5f6acd 100644
--- a/metrics/FairCheckerExceptions.py
+++ b/metrics/FairCheckerExceptions.py
@@ -8,3 +8,15 @@ class NotYetImplementedException(FairCheckerException):
     """Base class for FAIR-Checker exceptions."""
 
     pass
+
+
+class BioschemasProfileException(FairCheckerException):
+    """Base class for FAIR-Checker exceptions."""
+
+    pass
+
+
+class BioschemasProfileNotFoundException(BioschemasProfileException):
+    """Base class for FAIR-Checker exceptions."""
+
+    pass
diff --git a/metrics/WebResource.py b/metrics/WebResource.py
index c3e2cbb6..8965265b 100644
--- a/metrics/WebResource.py
+++ b/metrics/WebResource.py
@@ -16,9 +16,12 @@
 )
 import json
 import os
+from json.decoder import JSONDecodeError
 
 from metrics.util import clean_kg_excluding_ns_prefix
 
+logger = logging.getLogger("DEV")
+
 
 class WebResource:
     prefs = {
@@ -28,16 +31,11 @@ class WebResource:
     }
 
     base_path = Path(__file__).parent.parent  # current directory
-    static_file_path = "file://" + str(
-        (base_path / "static/data/jsonldcontext.json").resolve()
-    )
 
     chrome_options = Options()
     chrome_options.add_argument("--headless")
     chrome_options.add_argument("--no-sandbox")
-    # chrome_options.add_experimental_option(
-    #     "prefs", prefs
-    # )
+
     proxy = os.getenv("HTTP_PROXY")
     if proxy:
         chrome_options.add_argument("--proxy-server=" + proxy)
@@ -60,12 +58,12 @@ def __init__(self, url, rdf_graph=None) -> None:
         if rdf_graph is None:
             # get static RDF metadata (already available in html sources)
             kg_1 = self.extract_rdf_extruct(self.url)
-
-            if "html" in self.content_type:
-                logging.info("Resource content_type is HTML")
-                # get dynamic RDF metadata (generated from JS)
-                kg_2 = WebResource.extract_rdf_selenium(self.url)
-                self.rdf = kg_1 + kg_2
+            if self.content_type:
+                if ("html" in self.content_type) or ("ld+json" in self.content_type):
+                    logging.info("Resource content_type is HTML")
+                    # get dynamic RDF metadata (generated from JS)
+                    kg_2 = WebResource.extract_rdf_selenium(self.url)
+                    self.rdf = kg_1 + kg_2
             else:
                 self.rdf = kg_1
         else:
@@ -102,8 +100,10 @@ def retrieve_html_selenium(self):
         self.browser_selenium = browser
 
     def retrieve_html_request(self):
-        while True:
+        nb_retry = 0
+        while nb_retry < 3:
             try:
+                nb_retry += 1
                 response = requests.get(url=self.url, timeout=10, verify=False)
                 break
             except SSLError:
@@ -121,8 +121,11 @@ def retrieve_html_request(self):
 
     # @staticmethod
     def extract_rdf_extruct(self, url) -> ConjunctiveGraph:
-        while True:
+        nb_retry = 0
+        response = None
+        while nb_retry < 3:
             try:
+                nb_retry += 1
                 response = requests.get(url=url, timeout=10, verify=False)
                 break
             except SSLError:
@@ -135,6 +138,10 @@ def extract_rdf_extruct(self, url) -> ConjunctiveGraph:
                 print("ConnectionError, retrying...")
                 time.sleep(10)
 
+        if not response:
+            logger.error(f"Could not get HTML doc from {url}")
+            return ConjunctiveGraph()
+
         self.status_code = response.status_code
         self.content_type = response.headers["Content-Type"]
         html_source = response.content
@@ -143,53 +150,78 @@ def extract_rdf_extruct(self, url) -> ConjunctiveGraph:
             html_source, syntaxes=["microdata", "rdfa", "json-ld"], errors="ignore"
         )
 
-        kg = ConjunctiveGraph()
+        kg_jsonld = ConjunctiveGraph()
+
+        # kg = ConjunctiveGraph()
 
         if "json-ld" in data.keys():
             for md in data["json-ld"]:
-                if "@context" in md.keys():
-                    if ("https://schema.org" in md["@context"]) or (
-                        "http://schema.org" in md["@context"]
-                    ):
-                        md["@context"] = self.static_file_path
-                kg.parse(
-                    data=json.dumps(md, ensure_ascii=False),
-                    format="json-ld",
-                    publicID=url,
-                )
+
+                try:
+                    kg_jsonld.parse(
+                        data=md,
+                        format="json-ld",
+                        publicID=url,
+                    )
+                except UnicodeDecodeError as unicode_error:
+                    logger.error(
+                        f"Cannot parse RDF from {url} due to UnicodeDecodeError"
+                    )
+                    logger.error(unicode_error)
+                except json.JSONDecodeError as json_error:
+                    logger.error(f"Cannot parse RDF from {url} due to JSONDecodeError")
+                    logger.error(json_error)
+
+        kg_rdfa = ConjunctiveGraph()
+
         if "rdfa" in data.keys():
             for md in data["rdfa"]:
-                if "@context" in md.keys():
-                    if ("https://schema.org" in md["@context"]) or (
-                        "http://schema.org" in md["@context"]
-                    ):
-                        md["@context"] = self.static_file_path
-                kg.parse(
-                    data=json.dumps(md, ensure_ascii=False),
-                    format="json-ld",
-                    publicID=url,
-                )
+
+                try:
+                    kg_rdfa.parse(
+                        data=json.dumps(md, ensure_ascii=False),
+                        format="json-ld",
+                        publicID=url,
+                    )
+                except UnicodeDecodeError as unicode_error:
+                    logger.error(
+                        f"Cannot parse RDF from {url} due to UnicodeDecodeError"
+                    )
+                    logger.error(unicode_error)
+                except json.JSONDecodeError as json_error:
+                    logger.error(f"Cannot parse RDF from {url} due to JSONDecodeError")
+                    logger.error(json_error)
+
+        kg_microdata = ConjunctiveGraph()
 
         if "microdata" in data.keys():
             for md in data["microdata"]:
-                if "@context" in md.keys():
-                    if ("https://schema.org" in md["@context"]) or (
-                        "http://schema.org" in md["@context"]
-                    ):
-                        md["@context"] = self.static_file_path
-                kg.parse(
-                    data=json.dumps(md, ensure_ascii=False),
-                    format="json-ld",
-                    publicID=url,
-                )
-
-        logging.debug(kg.serialize(format="turtle"))
 
-        kg.namespace_manager.bind("sc", URIRef("http://schema.org/"))
-        kg.namespace_manager.bind("bsc", URIRef("https://bioschemas.org/"))
-        kg.namespace_manager.bind("dct", URIRef("http://purl.org/dc/terms/"))
+                try:
+                    kg_microdata.parse(
+                        data=json.dumps(md, ensure_ascii=False),
+                        format="json-ld",
+                        publicID=url,
+                    )
+                except UnicodeDecodeError as unicode_error:
+                    logger.error(
+                        f"Cannot parse RDF from {url} due to UnicodeDecodeError"
+                    )
+                    logger.error(unicode_error)
+                except json.JSONDecodeError as json_error:
+                    logger.error(f"Cannot parse RDF from {url} due to JSONDecodeError")
+                    logger.error(json_error)
 
-        return kg
+        kg_extruct = kg_jsonld + kg_rdfa + kg_microdata
+
+        logging.debug(kg_extruct.serialize(format="turtle"))
+
+        kg_extruct.namespace_manager.bind("sc", URIRef("http://schema.org/"))
+        kg_extruct.namespace_manager.bind("bsc", URIRef("https://bioschemas.org/"))
+        kg_extruct.namespace_manager.bind("dct", URIRef("http://purl.org/dc/terms/"))
+
+        # print(len(kg_extruct))
+        return kg_extruct
 
     @staticmethod
     def extract_rdf_selenium(url) -> ConjunctiveGraph:
@@ -197,7 +229,6 @@ def extract_rdf_selenium(url) -> ConjunctiveGraph:
 
         browser = WebResource.WEB_BROWSER_HEADLESS
         browser.get(url)
-        # self.html_source = browser.page_source
         # browser.quit()
         logging.debug(type(browser.page_source))
         logging.info(f"size of the parsed web page: {len(browser.page_source)}")
@@ -213,20 +244,33 @@ def extract_rdf_selenium(url) -> ConjunctiveGraph:
             jsonld_string = tree.xpath('//script[@type="application/ld+json"]//text()')
 
             for json_ld_annots in jsonld_string:
-                jsonld = json.loads(json_ld_annots)
-
-                if type(jsonld) == list:
-                    jsonld = jsonld[0]
-                if "@context" in jsonld.keys():
-                    if "//schema.org" in jsonld["@context"]:
-                        jsonld["@context"] = WebResource.static_file_path
-                kg.parse(
-                    data=json.dumps(jsonld, ensure_ascii=False),
-                    format="json-ld",
-                    publicID=url,
-                )
+                jsonld = {}
+                try:
+                    jsonld = json.loads(json_ld_annots)
+                except JSONDecodeError as err:
+                    print(err)
+                    continue
+
+                if jsonld is None:
+                    continue
+
+                try:
+                    kg.parse(
+                        data=json.dumps(jsonld, ensure_ascii=False),
+                        format="json-ld",
+                        publicID=url,
+                    )
+                except UnicodeDecodeError as unicode_error:
+                    print(f"Cannot parse RDF from {url} due to UnicodeDecodeError")
+                    logger.error(
+                        f"Cannot parse RDF from {url} due to UnicodeDecodeError"
+                    )
+                    logger.error(unicode_error)
+                except json.JSONDecodeError as json_error:
+                    logger.error(f"Cannot parse RDF from {url} due to JSONDecodeError")
+                    logger.error(json_error)
                 logging.debug(f"{len(kg)} retrieved triples in KG")
-                logging.debug(kg.serialize(format="turtle"))
+                # logging.debug(kg.serialize(format="turtle"))
 
         except NoSuchElementException:
             logging.warning('Can\'t find "application/ld+json" content')
diff --git a/notebooks/Check_Bioschemas_live_deploys.ipynb b/notebooks/Check_Bioschemas_live_deploys.ipynb
new file mode 100644
index 00000000..187d07ec
--- /dev/null
+++ b/notebooks/Check_Bioschemas_live_deploys.ipynb
@@ -0,0 +1,299 @@
+{
+ "cells": [
+  {
+   "cell_type": "code",
+   "execution_count": 4,
+   "id": "7dd4a930",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "import sys\n",
+    "sys.path.append(\"../\")\n",
+    "\n",
+    "import requests\n",
+    "import random\n",
+    "import json\n",
+    "from tqdm.notebook import tqdm\n",
+    "import pandas as pd\n",
+    "from metrics.WebResource import WebResource"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 7,
+   "id": "d035e081",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "def get_live_deploys_urls():\n",
+    "    results = []\n",
+    "    live_deploys_remote_file = \"https://raw.githubusercontent.com/BioSchemas/bioschemas.github.io/master/_data/live_deployments.json\"\n",
+    "    res = requests.get(live_deploys_remote_file)\n",
+    "    live_deploys = res.json()\n",
+    "    for r in random.sample(live_deploys[\"resources\"], 5):\n",
+    "    #for r in live_deploys[\"resources\"]:\n",
+    "        results.append(r[\"url\"])\n",
+    "    return results\n",
+    "\n",
+    "def test_ld_bioschemas_annot():\n",
+    "        res = get_live_deploys_urls()\n",
+    "        errors = []\n",
+    "        results = []\n",
+    "        \n",
+    "        i = 0\n",
+    "        for r in tqdm(res):\n",
+    "        #for r in reversed(res):\n",
+    "            row = {}\n",
+    "            status_code = requests.head(r).status_code\n",
+    "            print(r)\n",
+    "            row['url'] = r\n",
+    "            print(\"Status code: \" + str(status_code))\n",
+    "            row['status code'] = str(status_code)\n",
+    "            try :\n",
+    "                kg = WebResource(r).get_rdf()\n",
+    "                print(\"Triples: \" + str(len(kg)))\n",
+    "                row['Retrieved triples'] = len(kg)\n",
+    "                if not len(kg) > 0:\n",
+    "                    print(f\"# Error with {r}\")\n",
+    "                    row['Error'] = True\n",
+    "                    errors.append(r)\n",
+    "            except UnicodeDecodeError as err:\n",
+    "                print(err)\n",
+    "            results.append(row)\n",
+    "\n",
+    "        print(f\"{len(res)} tested URLS\")\n",
+    "        print(f\"{len(errors)} failing URLS\")\n",
+    "        print(errors)\n",
+    "        df = pd.read_json(json.dumps(results))\n",
+    "        return df"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 8,
+   "id": "ca494b2e",
+   "metadata": {
+    "scrolled": true
+   },
+   "outputs": [
+    {
+     "data": {
+      "application/vnd.jupyter.widget-view+json": {
+       "model_id": "7b10e0e35cd04db6a503fef0e665f709",
+       "version_major": 2,
+       "version_minor": 0
+      },
+      "text/plain": [
+       "  0%|          | 0/5 [00:00<?, ?it/s]"
+      ]
+     },
+     "metadata": {},
+     "output_type": "display_data"
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "https://modelarchive.org/\n",
+      "Status code: 200\n",
+      "8\n",
+      "{'@context': 'file:///Users/gaignard-a/Documents/Dev/fair-checker/static/data/jsonldcontext.json', 'description': 'ModelArchive provides a stable accession code (DOI) for deposited theoretical models of protein and macromolecular structures', 'name': 'ModelArchive', '@type': 'DataCatalog', 'url': 'https://www.modelarchive.org/', 'keywords': 'model, archive, ModelArchive, homology model, protein structure models', 'license': {'@type': 'CreativeWork', 'name': 'Creative Commons CC4 Attribution', 'url': 'https://creativecommons.org/licenses/by/4.0/'}, 'publisher': [{'@type': 'Organization', 'name': 'SIB Swiss Institute of Bioinformatics', 'url': 'https://sib.swiss'}, {'@type': 'Organization', 'name': 'Biozentrum - University of Basel', 'url': 'https://www.biozentrum.unibas.ch'}]}\n",
+      "<class 'dict'>\n",
+      "Triples: 34\n",
+      "https://www.omicsdi.org/\n",
+      "Status code: 200\n",
+      "1\n",
+      "{'@graph': [{'name': 'Omics Discovery Index - Discovering and Linking Public Omics Datasets', 'url': 'http://www.omicsdi.org/', 'keywords': 'Proteomics, Genomics, Transcriptomics, Metabolomics, Multi-Omics, MultiOmics, Bioinformatics, System Biology, Datasets', 'description': 'OmicsDI is an integrated and open source platform facilitating the access and dissemination of omics datasets. OmicsDI provides a unique infrastructure to integrate datasets coming from multiple omics studies, including at present proteomics, genomics and metabolomics and Multi-Omics', 'variableMeasured': None, 'alternateName': 'OmicsDI', 'logo': None, 'email': None, 'image': 'http://www.omicsdi.org/static/images/logo/OmicsDI-icon-3.png', 'potentialAction': {'target': 'http://www.omicsdi.org/search?q={search_term_string}', '@type': 'SearchAction', 'query-input': 'required name=search_term_string'}, 'sameAs': None, 'creator': None, 'citation': None, 'primaryImageOfPage': None, '@context': 'http://schema.org', '@type': 'WebSite'}, {'name': 'OmicsDI Consortium', 'url': 'http://www.omicsdi.org/', 'keywords': None, 'description': 'OmicsDI is an integrated and open source platform facilitating the access and dissemination of omics datasets. OmicsDI provides a unique infrastructure to integrate datasets coming from multiple omics studies, including at present proteomics, genomics and metabolomics and Multi-Omics', 'variableMeasured': None, 'alternateName': 'OmicsDI Consortium', 'logo': 'http://www.omicsdi.org/static/images/logo/OmicsDI-icon-3.png', 'email': 'omicsdi-support@ebi.ac.uk', 'image': None, 'potentialAction': None, 'sameAs': 'https://github.com/OmicsDI,https://twitter.com/OmicsDI,https://plus.google.com/u/0/113645049761549550219', 'creator': None, 'citation': None, 'primaryImageOfPage': None, '@context': 'http://schema.org', '@type': 'Organization'}]}\n",
+      "<class 'dict'>\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "ERROR:DEV:Cannot parse RDF from https://www.omicsdi.org/ due to UnicodeDecodeError\n",
+      "ERROR:DEV:'utf-8' codec can't decode byte 0x8b in position 1: invalid start byte\n",
+      "ERROR:DEV:Cannot parse RDF from https://www.omicsdi.org/ due to UnicodeDecodeError\n",
+      "ERROR:DEV:'utf-8' codec can't decode byte 0x8b in position 1: invalid start byte\n"
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "Cannot parse RDF from https://www.omicsdi.org/ due to UnicodeDecodeError\n",
+      "Triples: 0\n",
+      "# Error with https://www.omicsdi.org/\n",
+      "http://gigadb.org/\n",
+      "Status code: 200\n",
+      "Triples: 14\n",
+      "https://deb-central.org/\n",
+      "Status code: 405\n",
+      "Expecting value: line 1 column 1 (char 0)\n",
+      "Triples: 0\n",
+      "# Error with https://deb-central.org/\n",
+      "https://galaxyproject.org/\n",
+      "Status code: 200\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "WARNING:root:Can't find \"application/ld+json\" content\n"
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "Triples: 0\n",
+      "# Error with https://galaxyproject.org/\n",
+      "5 tested URLS\n",
+      "3 failing URLS\n",
+      "['https://www.omicsdi.org/', 'https://deb-central.org/', 'https://galaxyproject.org/']\n"
+     ]
+    },
+    {
+     "data": {
+      "text/html": [
+       "<div>\n",
+       "<style scoped>\n",
+       "    .dataframe tbody tr th:only-of-type {\n",
+       "        vertical-align: middle;\n",
+       "    }\n",
+       "\n",
+       "    .dataframe tbody tr th {\n",
+       "        vertical-align: top;\n",
+       "    }\n",
+       "\n",
+       "    .dataframe thead th {\n",
+       "        text-align: right;\n",
+       "    }\n",
+       "</style>\n",
+       "<table border=\"1\" class=\"dataframe\">\n",
+       "  <thead>\n",
+       "    <tr style=\"text-align: right;\">\n",
+       "      <th></th>\n",
+       "      <th>url</th>\n",
+       "      <th>status code</th>\n",
+       "      <th>Retrieved triples</th>\n",
+       "      <th>Error</th>\n",
+       "    </tr>\n",
+       "  </thead>\n",
+       "  <tbody>\n",
+       "    <tr>\n",
+       "      <th>0</th>\n",
+       "      <td>https://modelarchive.org/</td>\n",
+       "      <td>200</td>\n",
+       "      <td>34</td>\n",
+       "      <td>NaN</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>1</th>\n",
+       "      <td>https://www.omicsdi.org/</td>\n",
+       "      <td>200</td>\n",
+       "      <td>0</td>\n",
+       "      <td>1.0</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>2</th>\n",
+       "      <td>http://gigadb.org/</td>\n",
+       "      <td>200</td>\n",
+       "      <td>14</td>\n",
+       "      <td>NaN</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>3</th>\n",
+       "      <td>https://deb-central.org/</td>\n",
+       "      <td>405</td>\n",
+       "      <td>0</td>\n",
+       "      <td>1.0</td>\n",
+       "    </tr>\n",
+       "    <tr>\n",
+       "      <th>4</th>\n",
+       "      <td>https://galaxyproject.org/</td>\n",
+       "      <td>200</td>\n",
+       "      <td>0</td>\n",
+       "      <td>1.0</td>\n",
+       "    </tr>\n",
+       "  </tbody>\n",
+       "</table>\n",
+       "</div>"
+      ],
+      "text/plain": [
+       "                          url  status code  Retrieved triples  Error\n",
+       "0   https://modelarchive.org/          200                 34    NaN\n",
+       "1    https://www.omicsdi.org/          200                  0    1.0\n",
+       "2          http://gigadb.org/          200                 14    NaN\n",
+       "3    https://deb-central.org/          405                  0    1.0\n",
+       "4  https://galaxyproject.org/          200                  0    1.0"
+      ]
+     },
+     "execution_count": 8,
+     "metadata": {},
+     "output_type": "execute_result"
+    }
+   ],
+   "source": [
+    "df = test_ld_bioschemas_annot()\n",
+    "df"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "2c8803f6",
+   "metadata": {},
+   "outputs": [],
+   "source": []
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "f65bfb5e",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "    "
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "d9027674",
+   "metadata": {},
+   "outputs": [],
+   "source": []
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "c59c5820",
+   "metadata": {},
+   "outputs": [],
+   "source": []
+  }
+ ],
+ "metadata": {
+  "kernelspec": {
+   "display_name": "Python 3 (ipykernel)",
+   "language": "python",
+   "name": "python3"
+  },
+  "language_info": {
+   "codemirror_mode": {
+    "name": "ipython",
+    "version": 3
+   },
+   "file_extension": ".py",
+   "mimetype": "text/x-python",
+   "name": "python",
+   "nbconvert_exporter": "python",
+   "pygments_lexer": "ipython3",
+   "version": "3.9.10"
+  }
+ },
+ "nbformat": 4,
+ "nbformat_minor": 5
+}
diff --git a/profile_recomender.py b/profile_recomender.py
new file mode 100644
index 00000000..fc44ac39
--- /dev/null
+++ b/profile_recomender.py
@@ -0,0 +1,138 @@
+from rdflib import ConjunctiveGraph
+from rich.console import Console
+from rich.table import Table
+
+# from rich.text import Text
+from argparse import ArgumentParser, RawTextHelpFormatter
+
+from profiles.ProfileFactory import ProfileFactory
+
+import sys
+import time
+
+
+parser = ArgumentParser(
+    description="""
+profile_recommender helps you in finding the most relevant Bioschemas profile.   
+
+Usage examples :
+    python profile_recommender.py -url http://bio.tools/jaspar
+    
+Please report any issue to alban.gaignard@univ-nantes.fr
+""",
+    formatter_class=RawTextHelpFormatter,
+)
+
+# parser.add_argument(
+#     "-u",
+#     "--update",
+#     help="download or update the EDAM ontology",
+# )
+
+parser.add_argument(
+    "-u",
+    "--urls",
+    metavar="urls",
+    type=str,
+    nargs="+",
+    help="input urls",
+)
+
+parser.add_argument(
+    "-f",
+    "--files",
+    metavar="files",
+    type=str,
+    nargs="+",
+    help="input files",
+)
+
+
+if __name__ == "__main__":
+    if len(sys.argv) == 1:
+        parser.print_help(sys.stderr)
+        sys.exit(1)
+
+    args = parser.parse_args()
+    console = Console()
+
+    s1 = time.time()
+    profiles = ProfileFactory.create_all_profiles()
+    ts1 = round((time.time() - s1), 2)
+    console.print(f"{len(profiles)} Bioschemas profiles loaded in {ts1} s")
+
+    if args.urls:
+        from metrics.WebResource import WebResource
+
+        for url in args.urls:
+            console.print(f"Which profile is relevant for {url} ?")
+            web_res = WebResource(url)
+            kg = web_res.get_rdf()
+            console.print(f"{len(kg)} loaded RDF triples")
+
+            results = {}
+
+            for p_name in profiles.keys():
+                profile = profiles[p_name]
+                sim = profile.compute_similarity(kg)
+                results[p_name] = {"score": sim, "ref": ""}
+
+            sorted_results = dict(
+                sorted(results.items(), key=lambda item: item[1]["score"], reverse=True)
+            )
+            # print(sorted_results)
+
+            table = Table(show_header=True, header_style="bold magenta")
+            table.add_column("Profile", justify="left")
+            table.add_column("Similarity score", justify="right")
+            table.add_column("Profile URI", justify="right", style="green")
+
+            for hit in sorted_results.keys():
+                table.add_row(
+                    str(hit),
+                    str(sorted_results[hit]["score"]),
+                    f"[link={sorted_results[hit]['ref']}]{sorted_results[hit]['ref']}[/link]",
+                )
+
+            console.rule(f"[bold red]Relevent Bioschemas profile for {url}")
+            console.print(table)
+            console.print()
+
+    if args.files:
+        for file in args.files:
+            console.print(f"Which profile is relevant for {file} ?")
+
+            kg = ConjunctiveGraph()
+            # kg.parse(file, format="turtle")
+            kg.parse(file)
+            console.print(f"{len(kg)} loaded RDF triples")
+
+            results = {}
+
+            for p_name in profiles.keys():
+                profile = profiles[p_name]
+                sim = profile.compute_similarity(kg)
+                # sim = profile.compute_loose_similarity(kg)
+                results[p_name] = {"score": sim, "ref": ""}
+
+            sorted_results = dict(
+                sorted(results.items(), key=lambda item: item[1]["score"], reverse=True)
+            )
+            # print(sorted_results)
+
+            table = Table(show_header=True, header_style="bold magenta")
+            table.add_column("Profile", justify="left")
+            table.add_column("Similarity score", justify="right")
+            table.add_column("Profile URI", justify="right", style="green")
+
+            for hit in sorted_results.keys():
+                table.add_row(
+                    str(hit),
+                    str(sorted_results[hit]["score"]),
+                    # str({sorted_results[hit]["ref"]})
+                    f"[link={sorted_results[hit]['ref']}]{sorted_results[hit]['ref']}[/link]",
+                )
+
+            console.rule(f"[bold red]Relevent Bioschemas profile for {file}")
+            console.print(table)
+            console.print()
diff --git a/profiles/Profile.py b/profiles/Profile.py
new file mode 100755
index 00000000..4c233ad4
--- /dev/null
+++ b/profiles/Profile.py
@@ -0,0 +1,317 @@
+# from abc import ABC, abstractmethod
+# import logging
+
+import requests
+
+from rdflib import ConjunctiveGraph, URIRef
+from rdflib.namespace import RDF
+from jinja2 import Template
+from pyshacl import validate
+from os import environ, path
+
+# class AbstractProfile(ABC):
+
+
+class Profile:
+
+    # TODO doc class
+    # TODO getters for class attributes
+
+    # cache = {}
+
+    def __init__(
+        self,
+        shape_name,
+        target_classes,
+        min_props,
+        rec_props,
+        ref_profile,
+        latest=True,
+        deprecated=False,
+    ):
+        self.shape_name = shape_name
+        self.target_classes = target_classes
+        self.min_props = min_props
+        self.rec_props = rec_props
+        self.ref_profile = ref_profile
+        self.latest = latest
+        self.deprecated = deprecated
+
+        self.shacl_shape = self.gen_SHACL_from_profile()
+
+        self.nb_min = len(self.min_props)
+        self.nb_rec = len(self.rec_props)
+
+    # def set_ref_profile(self, ref_profile):
+    #     self.ref_profile = ref_profile
+
+    def get_name(self):
+        return self.shape_name
+
+    def get_target(self):
+        return self.target_classes
+
+    def get_required(self):
+        return self.min_props
+
+    def get_recommended(self):
+        return self.rec_props
+
+    def get_ref_profile(self):
+        return self.ref_profile
+
+    def get_shacl_shape(self):
+        return self.shacl_shape
+
+    def get_is_deprecated(self):
+        return self.deprecated
+
+    def get_latest_profile(self):
+        return self.latest
+
+    def gen_SHACL_from_profile(self):
+        shape_name = self.shape_name
+        target_classes = self.target_classes
+        min_props = self.min_props
+        rec_props = self.rec_props
+
+        # print(shape_name)
+        # print(target_classes)
+        # print(min_props)
+        # print(rec_props)
+
+        # @prefix bsc: <https://bioschemas.org/> .
+        # @prefix bsc: <https://discovery.biothings.io/view/bioschemas/> .
+
+        shape_template = """
+@prefix ns: <https://fair-checker.france-bioinformatique.fr#> .
+@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
+@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
+@prefix sc: <http://schema.org/> .
+@prefix bsc: <https://discovery.biothings.io/view/bioschemas/> .
+@prefix dct: <http://purl.org/dc/terms/> .
+@prefix sh: <http://www.w3.org/ns/shacl#> .
+@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
+@prefix edam: <http://edamontology.org/> .
+@prefix biotools: <https://bio.tools/ontology/> .
+@prefix bioschemasdrafts: <https://discovery.biothings.io/view/bioschemasdrafts/> .
+@prefix bioschemastypes: <https://discovery.biothings.io/view/bioschemastypes/> .
+@prefix bh2022GH: <https://discovery.biothings.io/view/bh2022GH/> .
+
+ns:{{shape_name}}
+    a sh:NodeShape ;
+    
+    {% for c in target_classes %}
+    sh:targetClass  {{c}} ;
+    {% endfor %}
+
+    {% for min_prop in min_props %}
+    sh:property [
+        sh:path {{min_prop}} ;
+        sh:minCount 1 ;
+        sh:severity sh:Violation
+    ] ;
+    {% endfor %}
+
+    {% for rec_prop in rec_props %}
+    sh:property [
+        sh:path {{rec_prop}} ;
+        sh:minCount 1 ;
+        sh:severity sh:Warning
+    ] ;
+    {% endfor %}
+.
+        """
+
+        # [sh: alternativePath(ex:father ex: mother  )]
+
+        template = Template(shape_template)
+        shape = template.render(
+            shape_name=shape_name,
+            target_classes=target_classes,
+            min_props=min_props,
+            rec_props=rec_props,
+        )
+
+        return shape
+
+    def validate_shape(self, knowledge_graph, shacl_shape):
+        # print(knowledge_graph.serialize(format="turtle"))
+        r = validate(
+            data_graph=knowledge_graph,
+            data_graph_format="turtle",
+            shacl_graph=shacl_shape,
+            # shacl_graph = my_shacl_constraint,
+            shacl_graph_format="turtle",
+            ont_graph=None,
+            inference="rdfs",
+            abort_on_first=False,
+            meta_shacl=False,
+            debug=False,
+        )
+        conforms, results_graph, results_text = r
+
+        print("Evaluating: " + str(self.target_classes))
+
+        report_query = """
+                SELECT ?node ?path ?path ?severity WHERE {
+                    ?v rdf:type sh:ValidationReport ;
+                    sh:result ?r .
+                    ?r sh:focusNode ?node ;
+                    sh:sourceShape ?s .
+                    { ?s sh:path ?path ;
+                    sh:severity ?severity . }
+                    UNION { ?s sh:path/sh:alternativePath/rdf:rest*/rdf:first ?path ;
+                    sh:severity ?severity . }
+                    FILTER (! isBlank(?path))
+                }
+            """
+
+        results = results_graph.query(report_query)
+        # print("VALIDATION RESULTS")
+        # print(results_text)
+        # print(conforms)
+        # print(results_graph.serialize(format="turtle"))
+        warnings = []
+        errors = []
+        for r in results:
+            if "#Warning" in r["severity"]:
+                # print(
+                #     f'WARNING: Property {r["path"]} should be provided for {r["node"]}'
+                # )
+                warnings.append(f'{r["path"]}')
+            if "#Violation" in r["severity"]:
+                # print(f'ERROR: Property {r["path"]} must be provided for {r["node"]}')
+                errors.append(f'{r["path"]}')
+
+        return conforms, warnings, errors
+
+    def match_sub_kgs_from_profile(self, kg):
+        kg.namespace_manager.bind("sc", URIRef("https://schema.org/"))
+        kg.namespace_manager.bind("bsc", URIRef("https://bioschemas.org/"))
+        kg.namespace_manager.bind("dct", URIRef("http://purl.org/dc/terms/"))
+
+        sub_kg_list = []
+
+        for s, p, o in kg.triples((None, RDF.type, None)):
+            # print(o)
+            # print(o.n3(kg.namespace_manager))
+            if o.n3(kg.namespace_manager) in self.target_classes:
+                print(f"Trying to validate {s} as a(n) {o} resource")
+                sub_kg = ConjunctiveGraph()
+                for x, y, z in kg.triples((s, None, None)):
+                    sub_kg.add((x, y, z))
+                sub_kg_list.append({"sub_kg": sub_kg, "subject": s, "object": o})
+        return sub_kg_list
+
+    def compute_similarity(self, kg) -> float:
+        kg.namespace_manager.bind("sc", URIRef("http://schema.org/"))
+        kg.namespace_manager.bind("bsc", URIRef("https://bioschemas.org/"))
+        kg.namespace_manager.bind("dct", URIRef("http://purl.org/dc/terms/"))
+
+        # print(len(kg))
+        # print(kg.serialize(format="turtle"))
+
+        results = {}
+
+        # list classes
+        for s, p, o in kg.triples((None, RDF.type, None)):
+            # print()
+            # print(f"{s.n3(kg.namespace_manager)} is a {o.n3(kg.namespace_manager)}")
+            # print(bs_profiles.keys())
+            # print(o.n3(kg.namespace_manager))
+            if o.n3(kg.namespace_manager) in self.target_classes:
+                # print()
+                print(f"Trying to validate {s} as a(n) {o} resource")
+                shacl_shape = self.gen_SHACL_from_profile(
+                    # o.n3(kg.namespace_manager)
+                )
+
+                sub_kg = ConjunctiveGraph()
+                for x, y, z in kg.triples((s, None, None)):
+                    sub_kg.add((x, y, z))
+
+                conforms, warnings, errors = self.validate_shape(
+                    knowledge_graph=sub_kg, shacl_shape=shacl_shape
+                )
+
+                # print(conforms)
+                # print(f"{len(errors)} / {self.nb_min}")
+                # print(f"{len(warnings)} / {self.nb_rec}")
+
+                max_points = 2 * self.nb_min + self.nb_rec
+
+                similarity = (
+                    max_points - (2 * len(errors) + len(warnings))
+                ) / max_points
+                similarity = round(similarity, 2)
+                return similarity
+
+        return 0.0
+
+    def compute_loose_similarity(self, kg) -> float:
+        kg.namespace_manager.bind("sc", URIRef("http://schema.org/"))
+        kg.namespace_manager.bind("bsc", URIRef("https://bioschemas.org/"))
+        kg.namespace_manager.bind("dct", URIRef("http://purl.org/dc/terms/"))
+
+        print(f"Computing loose similarity  for profile {self.shape_name}")
+        # print(len(kg))
+        # print(kg.serialize(format="turtle"))
+
+        results = {}
+
+        # list classes
+        for s, p, o in kg.triples((None, RDF.type, None)):
+            has_required_rdf_type = 0
+            if o.n3(kg.namespace_manager) in self.target_classes:
+                has_required_rdf_type = 10
+
+            # print()
+            print(f"Trying to validate {s} as a(n) {o} resource")
+            shacl_shape = self.gen_SHACL_from_profile(
+                # o.n3(kg.namespace_manager)
+            )
+
+            sub_kg = ConjunctiveGraph()
+            for x, y, z in kg.triples((s, None, None)):
+                sub_kg.add((x, y, z))
+
+            conforms, warnings, errors = self.validate_shape(
+                knowledge_graph=sub_kg, shacl_shape=shacl_shape
+            )
+
+            print(s)
+            print(f"{self.shape_name} --> {conforms}")
+            print(f"{has_required_rdf_type} / 10")
+            print(f"{len(errors)} / {self.nb_min}")
+            print(f"{len(warnings)} / {self.nb_rec}")
+
+            max_points = 10 + 2 * self.nb_min + self.nb_rec
+
+            similarity = (
+                max_points - (2 * len(errors) + len(warnings) + has_required_rdf_type)
+            ) / max_points
+            similarity = round(similarity, 2)
+            return similarity
+
+        return 0.0
+
+    # @abstractmethod
+    # def weak_evaluate(self) -> Evaluation:
+    #     pass
+
+    # @abstractmethod
+    # def strong_evaluate(self) -> Evaluation:
+    #     pass
+
+    def __str__(self):
+        return (
+            f"Profile: {self.shape_name}"
+            f"\n\tTarget: {self.target_classes}"
+            # f"\n\t {self.principle} "
+            # f"\n\t {self.name} "
+            # f"\n\t {self.desc} "
+            # f"\n\t {self.creator} "
+            # f"\n\t {self.created_at} "
+            # f"\n\t {self.updated_at} "
+        )
diff --git a/profiles/ProfileFactory.py b/profiles/ProfileFactory.py
new file mode 100644
index 00000000..80d1c620
--- /dev/null
+++ b/profiles/ProfileFactory.py
@@ -0,0 +1,681 @@
+from profiles.Profile import Profile
+from metrics.FairCheckerExceptions import BioschemasProfileNotFoundException
+from os import environ, path
+import requests
+import re
+import json
+import os
+import yaml
+from tqdm import tqdm
+from rdflib import URIRef, ConjunctiveGraph
+
+# from app import dev_logger
+
+
+def profile_file_parser(url_profile):
+    response = requests.get(url_profile)
+    if response.status_code == 200:
+        profiles_dict = {}
+        profiles_jsonld = response.json()
+
+        for element in profiles_jsonld["@graph"]:
+            profile_dict = {
+                "name": "",
+                "target_classes": [],
+                "file": "",
+                "required": [],
+                "recommended": [],
+                "optional": [],
+                "id": "",
+                "ref_profile": "",
+            }
+            profiles_versions = request_profile_versions()
+
+            # for element in profiles_jsonld["@graph"]:
+            if element["@type"] == "rdfs:Class":
+                # print("Class: " + element["@id"])
+                name = element["rdfs:label"]
+                profile_dict["id"] = element["@id"].replace("bioschemas", "bsc")
+                profile_dict["name"] = name
+
+                sc_type = element["rdfs:subClassOf"]["@id"]
+
+                # replace DDE prefix by schema.org prefix for Schema.org types
+                replace_prefix = {
+                    "bioschemastypes:": "sc:",
+                    # "bioschemastypesdrafts:": "sc:",
+                    "schema:": "sc:",
+                }
+                for i, j in replace_prefix.items():
+                    sc_type = sc_type.replace(i, j)
+
+                profile_dict["target_classes"].append(sc_type)
+                if "schema:schemaVersion" in element.keys():
+                    for url in element["schema:schemaVersion"]:
+                        if "https://bioschemas.org" in url:
+                            profile_dict["ref_profile"] = url
+
+                            status_code = requests.head(url).status_code
+                            if status_code != 200:
+                                print(url)
+                                # print(status_code)
+                        else:
+                            raw_file_base = "https://raw.githubusercontent.com/BioSchemas/specifications/master/"
+                            file_url = url
+                            file_url_path = file_url.split("/master/")[-1]
+                            raw_file_url = raw_file_base + file_url_path
+                            profile_dict["file"] = raw_file_url
+
+                            # status_code = requests.head(raw_file_url).status_code
+                            # if status_code != 200:
+                            print(raw_file_url)
+                            # print(status_code)
+                else:
+                    if profiles_versions[name]["latest_release"]:
+                        latest_version = profiles_versions[name]["latest_release"]
+                    else:
+                        latest_version = profiles_versions[name]["latest_publication"]
+
+                    bs_profile_url_base = (
+                        "https://bioschemas.org/profiles/" + name + "/"
+                    )
+                    bs_profile_url_path = bs_profile_url_base + latest_version
+                    # bs_profile_url_path = bs_profile_url_base + url_dl.split("/")[-1].replace("_v", "/").strip(".json")
+                    profile_dict["ref_profile"] = bs_profile_url_path
+                    # r = requests.head(bs_profile_url_path, verify=False, timeout=5) # it is faster to only request the header
+                    # print(r.status_code)
+
+                importance_levels = ["required", "recommended", "optional"]
+
+                for importance in importance_levels:
+                    if "$validation" in element:
+                        if importance in element["$validation"]:
+                            for property in element["$validation"][importance]:
+
+                                added = False
+                                # Identifying non Schema properties
+                                for elem in profiles_jsonld["@graph"]:
+                                    if (
+                                        elem["@type"] == "rdf:Property"
+                                        and property == elem["rdfs:label"]
+                                    ):
+
+                                        profile_dict[importance].append(
+                                            # Maybe change prefix in shape gen instead
+                                            elem["@id"].replace("bioschemas:", "bsc:")
+                                        )
+                                        added = True
+                                if added:
+                                    continue
+                                profile_dict[importance].append("sc:" + property)
+
+                profiles_dict[profile_dict["ref_profile"]] = profile_dict
+
+    # for compatibility with existing code
+    # profile_dict["min_props"] = profile_dict.pop("required")
+    # profile_dict["rec_props"] = profile_dict.pop("recommended")
+
+    # print(json.dumps(profiles_dict, indent=2))
+    # print(len(profiles_dict))
+    return profiles_dict
+
+
+def get_profiles_from_dde():
+    url_profiles = [
+        "https://raw.githubusercontent.com/BioSchemas/bioschemas-dde/main/bioschemas.json",
+        "https://raw.githubusercontent.com/BioSchemas/bioschemas-dde/main/bioschemasdrafts.json",
+        # "https://raw.githubusercontent.com/BioSchemas/bioschemas-dde/main/bioschemastypes.json",
+        # "https://raw.githubusercontent.com/BioSchemas/bioschemas-dde/main/bioschemastypesdrafts.json"
+    ]
+    results = {}
+    profiles_names_list = []
+    for url_profile in url_profiles:
+        profiles_dict = profile_file_parser(url_profile)
+
+        for profile_key in profiles_dict:
+            if profiles_dict[profile_key]["name"] not in profiles_names_list:
+                results[profile_key] = profiles_dict[profile_key]
+                profiles_names_list.append(profiles_dict[profile_key]["name"])
+    return results
+
+
+@DeprecationWarning
+def get_profiles_specs_from_github():
+    github_token = environ.get("GITHUB_TOKEN")
+    headers = {
+        "Authorization": "token {}".format(github_token),
+        "User-Agent": "FAIR-checker",
+        "Accept": "application/vnd.github.v3+json",
+    }
+    url = "https://api.github.com/repos/BioSchemas/specifications/contents"
+
+    # Request specifications github
+    response = requests.get(url, headers=headers)
+
+    if response.status_code == requests.codes.ok:
+        profiles_dict = {}
+        profile_folders_json = response.json()
+
+        # Loop over each folder (one folder == one profile and/or one type)
+        for profile_folder in profile_folders_json:
+            if profile_folder["type"] == "dir":
+                profile_name = profile_folder["name"]
+                response = requests.get(profile_folder["url"], headers=headers)
+                items = response.json()
+
+                # For each profile and/or type, look for jsonld folder
+                for item in items:
+                    if item["name"] == "jsonld":
+                        response = requests.get(item["url"], headers=headers)
+                        results_files = response.json()
+                        releases = {}
+                        drafts = {}
+                        # Look for each profile file in json folder and store version and download link for each
+                        for file in results_files:
+                            if (
+                                file["type"] == "file"
+                                and "DEPRECATED" not in file["download_url"]
+                            ):
+                                regex_version = "_v([0-9]*.[0-9]*)-"
+                                m = re.search(regex_version, file["download_url"])
+
+                                if "RELEASE" in file["download_url"]:
+                                    releases[file["download_url"]] = float(m.group(1))
+                                    # releases[m.group(1)] = res["download_url"]
+                                # elif "DRAFT" in file["download_url"]:
+                                elif "DRAFT" in file["download_url"]:
+                                    drafts[file["download_url"]] = float(m.group(1))
+
+                        latest_url_dl = ""
+                        if releases:
+                            latest_url_dl = get_latest_profile(releases)
+                        elif drafts:
+                            latest_url_dl = get_latest_profile(drafts)
+
+                        if latest_url_dl:
+                            profile_dict = profile_file_parser(latest_url_dl)
+                            for profile_k in profile_dict.keys():
+                                profiles_dict[
+                                    profile_dict[profile_k]["ref_profile"]
+                                ] = profile_dict[profile_k]
+
+                        # To get all profiles and not only latest
+
+                        # all_urls = list(releases.keys()) + list(drafts.keys())
+                        # print(all_urls)
+                        # print(len(all_urls))
+
+                        # for url in all_urls:
+                        #     response = requests.get(url, headers=headers)
+                        #     jsonld = response.json()
+                        #     profile_dict = parse_profile(jsonld, url)
+                        #     profiles_dict[profile_dict["ref_profile"]] = profile_dict
+        return profiles_dict
+    else:
+        return False
+
+
+@DeprecationWarning
+def get_latest_profile(profiles_dict):
+
+    latest_rel = max(profiles_dict.values())
+
+    # latest_url_dl = list(profiles_dict.keys())[list(profiles_dict.values()).index(latest_rel)]
+    latest_url_dl = [k for k, v in profiles_dict.items() if v == latest_rel]
+    return latest_url_dl[0]
+
+
+def request_profile_versions():
+    response = requests.get(
+        "https://raw.githubusercontent.com/BioSchemas/bioschemas.github.io/master/_data/profile_versions.yaml"
+    )
+    content = response.text
+    dict_content = yaml.safe_load(content)
+    return dict_content
+
+
+@DeprecationWarning
+def parse_profile(jsonld, url_dl):
+    """_summary_
+
+    Args:
+        jsonld (_type_): _description_
+        url_dl (_type_): _description_
+
+    Returns:
+        _type_: _description_
+    """
+
+    profile_dict = {
+        "name": "",
+        "target_classes": [],
+        "file": url_dl,
+        "required": ["dct:conformsTo"],
+        "recommended": [],
+        "optional": [],
+        "id": "",
+        "ref_profile": "",
+    }
+
+    profiles_versions = request_profile_versions()
+
+    for element in jsonld["@graph"]:
+        if element["@type"] == "rdfs:Class":
+            # print("Class: " + element["@id"])
+            name = element["rdfs:label"]
+            profile_dict["id"] = element["@id"].replace("bioschemas", "bsc")
+            profile_dict["name"] = name
+
+            sc_type = element["rdfs:subClassOf"]["@id"]
+
+            # replace DDE prefix by schema.org prefix for Schema.org types
+            replace_prefix = {
+                "bioschemastypes:": "sc:",
+                # "bioschemastypesdrafts:": "sc:",
+                "schema:": "sc:",
+            }
+            for i, j in replace_prefix.items():
+                sc_type = sc_type.replace(i, j)
+
+            profile_dict["target_classes"].append(sc_type)
+            if "schema:schemaVersion" in element.keys():
+                profile_dict["ref_profile"] = element["schema:schemaVersion"][0]
+            else:
+                if profiles_versions[name]["latest_release"]:
+                    latest_version = profiles_versions[name]["latest_release"]
+                else:
+                    latest_version = profiles_versions[name]["latest_publication"]
+
+                bs_profile_url_base = "https://bioschemas.org/profiles/" + name + "/"
+                bs_profile_url_path = bs_profile_url_base + latest_version
+                # bs_profile_url_path = bs_profile_url_base + url_dl.split("/")[-1].replace("_v", "/").strip(".json")
+                profile_dict["ref_profile"] = bs_profile_url_path
+                # r = requests.head(bs_profile_url_path, verify=False, timeout=5) # it is faster to only request the header
+                # print(r.status_code)
+            break
+        # if element["@type"] == "rdf:Property":
+        #     additional_properties.append(element["@id"].replace("bioschemas", "bsc"))
+
+    importance_levels = ["required", "recommended", "optional"]
+
+    for importance in importance_levels:
+        if importance in jsonld["@graph"][0]["$validation"]:
+            for property in jsonld["@graph"][0]["$validation"][importance]:
+
+                added = False
+                # Identifying non Schema properties
+                for element in jsonld["@graph"]:
+                    if (
+                        element["@type"] == "rdf:Property"
+                        and property == element["rdfs:label"]
+                    ):
+                        profile_dict[importance].append(
+                            element["@id"].replace("bioschemas", "bsc")
+                        )
+                        added = True
+                if added:
+                    continue
+                profile_dict[importance].append("sc:" + property)
+
+    # for compatibility with existing code
+    profile_dict["min_props"] = profile_dict.pop("required")
+    profile_dict["rec_props"] = profile_dict.pop("recommended")
+
+    return profile_dict
+
+
+def load_profiles():
+    if not path.exists("profiles/bs_profiles.json"):
+        print("Updating Bioschemas profiles from github")
+        profiles = get_profiles_from_dde()
+        # profiles = get_profiles_specs_from_github()
+        with open("profiles/bs_profiles.json", "w") as outfile:
+            json.dump(profiles, outfile)
+        print("Profiles updated")
+    else:
+        print("Reading Bioschemas profiles from local file")
+        # Opening JSON file
+        with open("profiles/bs_profiles.json", "r") as openfile:
+            # Reading from json file
+            profiles = json.load(openfile)
+    return profiles
+
+
+def update_profiles():
+    if path.exists("profiles/bs_profiles.json"):
+        os.remove("profiles/bs_profiles.json")
+        load_profiles()
+
+
+def find_conformsto_subkg(kg):
+    kg.namespace_manager.bind("sc", URIRef("http://schema.org/"))
+    kg.namespace_manager.bind("bsc", URIRef("https://bioschemas.org/"))
+    kg.namespace_manager.bind("dct", URIRef("http://purl.org/dc/terms/"))
+
+    query_conformsto = """
+        PREFIX dct: <http://purl.org/dc/terms/>
+
+        SELECT ?x ?profile ?type WHERE {
+            ?x dct:conformsTo ?profile .
+            ?x rdf:type ?type .
+        }
+    """
+
+    sub_kg_list = []
+
+    results = kg.query(query_conformsto)
+    for r in results:
+        conformsto = r["profile"].strip("/")
+        identifier = r["x"]
+        type = r["type"]
+        sub_kg = ConjunctiveGraph()
+
+        for s, p, o in kg.triples((identifier, None, None)):
+            sub_kg.add((s, p, o))
+        # print(sub_kg.serialize(format="json-ld"))
+
+        # if self.get_ref_profile() == conformsto:
+        print(f"Found instance of type {type} that should conforms to {conformsto}")
+        sub_kg_list.append(
+            {
+                "sub_kg": sub_kg,
+                "subject": identifier,
+                "profile": conformsto,
+                "type": type,
+            }
+        )
+
+    return sub_kg_list
+
+
+def dyn_evaluate_profile_with_conformsto(kg):
+    """_summary_
+
+    Args:
+        kg (_type_): _description_
+
+    Returns:
+        _type_: _description_
+    """
+    results = {}
+
+    # Evaluate only profile with conformsTo
+    ct_sub_kg_list = find_conformsto_subkg(kg)
+    print(ct_sub_kg_list)
+
+    for ct_sub_kg in ct_sub_kg_list:
+        s = ct_sub_kg["subject"]
+        ct = ct_sub_kg["profile"]
+        t = ct_sub_kg["type"]
+        sub_kg = ct_sub_kg["sub_kg"]
+
+        try:
+            profile = ProfileFactory.create_profile_from_remote(ct)
+            shacl_shape = profile.get_shacl_shape()
+            # print(shacl_shape)
+            conforms, warnings, errors = profile.validate_shape(sub_kg, shacl_shape)
+            # we override the final result to exclude warnings
+            conforms = len(errors) == 0
+            results[str(s)] = {
+                "method": "by_conformsto",
+                "type": str(t),
+                "ref_profile": profile.get_ref_profile(),
+                "conforms": conforms,
+                "warnings": warnings,
+                "errors": errors,
+                "deprecated": profile.get_is_deprecated(),
+                "latest_profile": profile.get_latest_profile(),
+            }
+        except BioschemasProfileNotFoundException as e:
+            print(e)
+            profile_versions = request_profile_versions()
+            profile_name = ct.split("/")[-2]
+            bs_latest_profile = get_latest_ref_profile_from_pname(
+                profile_name, profile_versions
+            )
+            print(bs_latest_profile)
+            print("TOTO")
+            profile = ProfileFactory.create_profile_from_ref_profile(bs_latest_profile)
+
+            print(profile)
+
+    return results
+
+
+@DeprecationWarning
+def evaluate_profile_with_conformsto(kg):
+    # A instancier au lancement du serveur et actualiser lors d'updates
+
+    list_all_ct = ProfileFactory.list_all_conformsto()
+
+    results = {}
+
+    # Evaluate only profile with conformsTo
+    ct_sub_kg_list = find_conformsto_subkg(kg)
+
+    for ct_sub_kg in ct_sub_kg_list:
+        s = ct_sub_kg["subject"]
+        ct = ct_sub_kg["profile"]
+        t = ct_sub_kg["type"]
+        sub_kg = ct_sub_kg["sub_kg"]
+
+        if ct in list_all_ct:
+            ct_profile = ProfileFactory.create_profile_from_ref_profile(ct)
+
+            if ct_profile is not None:
+                shacl_shape = ct_profile.get_shacl_shape()
+                print(shacl_shape)
+                conforms, warnings, errors = ct_profile.validate_shape(
+                    sub_kg, shacl_shape
+                )
+                # we override the final result to exclude warnings
+                conforms = len(errors) == 0
+
+                results[str(s)] = {
+                    "type": str(t),
+                    "ref_profile": ct_profile.get_ref_profile(),
+                    "conforms": conforms,
+                    "warnings": warnings,
+                    "errors": errors,
+                }
+    return results
+
+
+def evaluate_profile_from_type(kg):
+    # A instancier au lancement du serveur et actualiser lors d'updates
+
+    results = {}
+
+    # Try to match and evaluate all found corresponding profiles
+    for p_key in PROFILES.keys():
+        sub_kg_list = PROFILES[p_key].match_sub_kgs_from_profile(kg)
+
+        if sub_kg_list:
+            for sub_kg in sub_kg_list:
+                s = sub_kg["subject"]
+                if not str(s) in results.keys():
+                    o = sub_kg["object"]
+                    sub_kg = sub_kg["sub_kg"]
+                    shacl_shape = PROFILES[p_key].get_shacl_shape()
+                    conforms, warnings, errors = PROFILES[p_key].validate_shape(
+                        sub_kg, shacl_shape
+                    )
+
+                    # we override the final result to exclude warnings
+                    conforms = len(errors) == 0
+                    results[str(s)] = {
+                        "method": "by_type",
+                        "type": str(o),
+                        "ref_profile": PROFILES[p_key].get_ref_profile(),
+                        "conforms": conforms,
+                        "warnings": warnings,
+                        "errors": errors,
+                        "deprecated": PROFILES[p_key].get_is_deprecated(),
+                        "latest_profile": PROFILES[p_key].get_latest_profile(),
+                    }
+    return results
+
+
+def is_profile_deprecated(profile_name, profile_versions):
+    # profile_versions = request_profile_versions()
+    if profile_name in profile_versions.keys():
+        if profile_versions[profile_name]["status"] == "deprecated":
+            return True
+        elif profile_versions[profile_name]["status"] == "active":
+            return False
+        else:
+            return False
+
+
+def is_profile_version_latest(profile_name, version, profile_versions):
+
+    # profile_versions = request_profile_versions()
+
+    if profile_name in profile_versions.keys():
+        if profile_versions[profile_name]["latest_release"] == version:
+            return True
+        elif profile_versions[profile_name]["latest_publication"] == version:
+            return True
+        else:
+            return False
+    else:
+        return False
+
+
+def get_latest_ref_profile_from_pname(profile_name, profile_versions):
+
+    bs_ref_profile_base = "https://bioschemas.org/profiles/" + profile_name + "/"
+
+    # profile_versions = request_profile_versions()
+    if profile_name in profile_versions.keys():
+        if profile_versions[profile_name]["latest_release"]:
+            latest_profile_version = profile_versions[profile_name]["latest_release"]
+            bs_ref_profile_latest = bs_ref_profile_base + latest_profile_version
+            if requests.head(bs_ref_profile_latest, verify=False).status_code == 200:
+                return bs_ref_profile_latest
+            else:
+                return None
+        elif profile_versions[profile_name]["latest_publication"]:
+            latest_profile_version = profile_versions[profile_name][
+                "latest_publication"
+            ]
+            bs_ref_profile_latest = bs_ref_profile_base + latest_profile_version
+            if requests.head(bs_ref_profile_latest, verify=False).status_code == 200:
+                return bs_ref_profile_latest
+            else:
+                return None
+        else:
+            return None
+    else:
+        return None
+
+
+# from enum import Enum, unique
+
+# @unique
+# class Implem(Enum):
+#     FAIR_CHECKER = 1
+#     FAIR_METRICS_API = 2
+
+
+class ProfileFactory:
+    @staticmethod
+    def list_all_conformsto():
+        bs_profiles = load_profiles()
+        list_ct = [bs_profiles[p_key]["ref_profile"] for p_key in bs_profiles.keys()]
+
+        return list_ct
+
+    @staticmethod
+    def create_profile_from_remote(bioschemas_profile_url):
+        """generates a compact representation of a profile
+
+        Args:
+            bioschemas_profile_url (str): from the profile URL,
+            generates the JSON file GitHub URL, parse it and
+            returns its compact representation.
+
+        Returns:
+            dict: compact representation of the profile
+        """
+        p = bioschemas_profile_url
+        version = p.split("/")[-1]
+        profile_name = p.split("/")[-2]
+        print(f"Profile {profile_name} version {version}")
+        github_file = f"https://raw.githubusercontent.com/BioSchemas/specifications/master/{profile_name}/jsonld/{profile_name}_v{version}.json"
+        response_header = requests.head(github_file)
+        if response_header.status_code != 200:
+            raise BioschemasProfileNotFoundException(
+                f"Cannot access file <{github_file}> for profile <{profile_name}> version <{version}> at <{p}>"
+            )
+        # response = requests.get(github_file)
+        # dict_profile = parse_profile(response.json(), github_file)
+
+        dict_profile = profile_file_parser(github_file)
+        dict_profile = dict_profile[bioschemas_profile_url]
+
+        # get latest profile versions
+        profile_versions = request_profile_versions()
+
+        # Check if the profile in dct:conformsTo is deprecated
+        is_deprecated = is_profile_deprecated(profile_name, profile_versions)
+
+        # Check if the profile in dct:conformsTo is the latest one
+        is_latest_profile = is_profile_version_latest(
+            profile_name, version, profile_versions
+        )
+        if is_latest_profile:
+            latest_ref_profile = True
+        else:
+            latest_ref_profile = get_latest_ref_profile_from_pname(
+                profile_name, profile_versions
+            )
+
+        print("#####################")
+        print("Deprecated: " + str(is_deprecated))
+        print("Latest: " + str(latest_ref_profile))
+        print("#####################")
+
+        profile = Profile(
+            shape_name=dict_profile["name"],
+            target_classes=dict_profile["target_classes"],
+            min_props=dict_profile["required"],
+            rec_props=dict_profile["recommended"],
+            ref_profile=dict_profile["ref_profile"],
+            deprecated=is_deprecated,
+            latest=latest_ref_profile,
+        )
+        return profile
+
+    @staticmethod
+    def create_profile_from_ref_profile(ref_profile):
+        bs_profiles = load_profiles()
+        for profile_key in bs_profiles.keys():
+            print(bs_profiles[profile_key]["ref_profile"])
+            if ref_profile == bs_profiles[profile_key]["ref_profile"]:
+                name = bs_profiles[profile_key]["name"]
+                profile = Profile(
+                    shape_name=name,
+                    target_classes=bs_profiles[profile_key]["target_classes"],
+                    min_props=bs_profiles[profile_key]["required"],
+                    rec_props=bs_profiles[profile_key]["recommended"],
+                    ref_profile=bs_profiles[profile_key]["ref_profile"],
+                )
+                return profile
+
+    @staticmethod
+    def create_all_profiles_from_specifications():
+        profiles = {}
+        bs_profiles = load_profiles()
+        for profile_key in bs_profiles.keys():
+            profiles[profile_key] = Profile(
+                shape_name=bs_profiles[profile_key]["name"],
+                target_classes=bs_profiles[profile_key]["target_classes"],
+                min_props=bs_profiles[profile_key]["required"],
+                rec_props=bs_profiles[profile_key]["recommended"],
+                ref_profile=bs_profiles[profile_key]["ref_profile"],
+            )
+        return profiles
+
+
+PROFILES = ProfileFactory.create_all_profiles_from_specifications()
diff --git a/profiles/bioschemas_shape_gen.py b/profiles/bioschemas_shape_gen.py
index c84cb9e6..b9d43c2c 100644
--- a/profiles/bioschemas_shape_gen.py
+++ b/profiles/bioschemas_shape_gen.py
@@ -2,13 +2,21 @@
 from rdflib.namespace import RDF
 from jinja2 import Template
 from pyshacl import validate
+import requests
 
 import os
 from os import walk
+from os import environ, path
+from dotenv import load_dotenv
 import json
+import yaml
+import re
 
 from metrics.WebResource import WebResource
 
+basedir = path.abspath(path.dirname(__file__))
+load_dotenv(path.join(basedir, ".env"))
+
 
 class BioschemasProfileError(Exception):
     def __init__(self, class_name, message="The profile is yet defined"):
@@ -301,6 +309,22 @@ def gen_shacl_alternatives(bs_profiles):
     },
 }
 
+
+def load_profiles():
+    if not path.exists("profiles/bs_profiles.json"):
+        print("Updating from github")
+        profiles = get_profiles_specs_from_github()
+        with open("profiles/bs_profiles.json", "w") as outfile:
+            json.dump(profiles, outfile)
+    else:
+        print("Reading from local file")
+        # Opening JSON file
+        with open("profiles/bs_profiles.json", "r") as openfile:
+            # Reading from json file
+            profiles = json.load(openfile)
+    return profiles
+
+
 bs_profiles = gen_shacl_alternatives(bs_profiles)
 
 
@@ -395,6 +419,159 @@ def gen_SHACL_from_profile(shape_name, target_classes, min_props, rec_props):
     return shape
 
 
+def get_profiles_specs_from_github():
+    github_token = environ.get("GITHUB_TOKEN")
+    headers = {
+        "Authorization": "token {}".format(github_token),
+        "User-Agent": "FAIR-checker",
+        "Accept": "application/vnd.github.v3+json",
+    }
+    url = "https://api.github.com/repos/BioSchemas/specifications/contents"
+
+    # Request specifications github
+    response = requests.get(url, headers=headers)
+
+    if response.status_code == requests.codes.ok:
+        profiles_dict = {}
+        profile_folders_json = response.json()
+
+        # Loop over each folder (one folder == one profile and/or one type)
+        for profile_folder in profile_folders_json:
+            if profile_folder["type"] == "dir":
+                profile_name = profile_folder["name"]
+                response = requests.get(profile_folder["url"], headers=headers)
+                items = response.json()
+
+                # For each profile and/or type, look for jsonld folder
+                for item in items:
+                    if item["name"] == "jsonld":
+                        response = requests.get(item["url"], headers=headers)
+                        results_files = response.json()
+                        releases = {}
+                        drafts = {}
+                        # Look for each profile file in json folder and store version and download link for each
+                        for file in results_files:
+                            if (
+                                file["type"] == "file"
+                                and not "DEPRECATED" in file["download_url"]
+                            ):
+                                regex_version = "_v([0-9]*.[0-9]*)-"
+                                m = re.search(regex_version, file["download_url"])
+
+                                if "RELEASE" in file["download_url"]:
+                                    releases[file["download_url"]] = float(m.group(1))
+                                    # releases[m.group(1)] = res["download_url"]
+                                elif "DRAFT" in file["download_url"]:
+                                    drafts[file["download_url"]] = float(m.group(1))
+
+                        latest_url_dl = ""
+                        if releases:
+                            latest_url_dl = get_latest_profile(releases)
+
+                        elif drafts:
+                            latest_url_dl = get_latest_profile(drafts)
+
+                        if latest_url_dl:
+                            response = requests.get(latest_url_dl, headers=headers)
+                            jsonld = response.json()
+                            profile_dict = parse_profile(
+                                jsonld, profile_name, latest_url_dl
+                            )
+
+                            profiles_dict["sc:" + profile_dict["name"]] = profile_dict
+        return profiles_dict
+    else:
+        return False
+
+
+def get_latest_profile(profiles_dict):
+
+    latest_rel = max(profiles_dict.values())
+
+    # latest_url_dl = list(profiles_dict.keys())[list(profiles_dict.values()).index(latest_rel)]
+    latest_url_dl = [k for k, v in profiles_dict.items() if v == latest_rel]
+    return latest_url_dl[0]
+
+
+def request_profile_versions():
+    response = requests.get(
+        "https://raw.githubusercontent.com/BioSchemas/bioschemas.github.io/master/_data/profile_versions.yaml"
+    )
+    content = response.text
+    dict_content = yaml.safe_load(content)
+    return dict_content
+
+
+def parse_profile(jsonld, profile_name, url_dl):
+    profile_dict = {
+        "name": "",
+        "file": url_dl,
+        "required": ["dct:conformsTo"],
+        "recommended": [],
+        "optional": [],
+        "id": "",
+        "ref_profile": "",
+    }
+
+    profiles_versions = request_profile_versions()
+
+    additional_properties = []
+    for element in jsonld["@graph"]:
+        if element["@type"] == "rdfs:Class":
+            # print("Class: " + element["@id"])
+            name = element["rdfs:label"]
+            profile_dict["id"] = element["@id"].replace("bioschemas", "bsc")
+            profile_dict["name"] = name
+            if "schema:schemaVersion" in element.keys():
+                profile_dict["ref_profile"] = element["schema:schemaVersion"][0]
+            else:
+                if profiles_versions[name]["latest_release"]:
+                    latest_version = profiles_versions[name]["latest_release"]
+                else:
+                    latest_version = profiles_versions[name]["latest_publication"]
+
+                bs_profile_url_base = "https://bioschemas.org/profiles/" + name + "/"
+                bs_profile_url_path = bs_profile_url_base + latest_version
+                # bs_profile_url_path = bs_profile_url_base + url_dl.split("/")[-1].replace("_v", "/").strip(".json")
+                profile_dict["ref_profile"] = bs_profile_url_path
+                print(bs_profile_url_path)
+                r = requests.head(
+                    bs_profile_url_path, verify=False, timeout=5
+                )  # it is faster to only request the header
+                print(r.status_code)
+            break
+        # if element["@type"] == "rdf:Property":
+        #     additional_properties.append(element["@id"].replace("bioschemas", "bsc"))
+
+    importance_levels = ["required", "recommended", "optional"]
+
+    for importance in importance_levels:
+        if importance in jsonld["@graph"][0]["$validation"]:
+            for property in jsonld["@graph"][0]["$validation"][importance]:
+
+                added = False
+                # Identifying non Schema properties
+                for element in jsonld["@graph"]:
+                    if (
+                        element["@type"] == "rdf:Property"
+                        and property == element["rdfs:label"]
+                    ):
+                        profile_dict[importance].append(
+                            element["@id"].replace("bioschemas", "bsc")
+                        )
+                        added = True
+                if added:
+                    continue
+                profile_dict[importance].append("sc:" + property)
+    profile_dict["min_props"] = profile_dict.pop("required")
+    profile_dict["rec_props"] = profile_dict.pop("recommended")
+
+    return profile_dict
+
+
+# bs_profiles = load_profiles()
+
+
 def validate_any_from_KG(kg):
     kg.namespace_manager.bind("sc", URIRef("http://schema.org/"))
     kg.namespace_manager.bind("bsc", URIRef("https://bioschemas.org/"))
@@ -504,6 +681,9 @@ def validate_any_from_microdata(input_url):
             conforms, warnings, errors = validate_shape(
                 knowledge_graph=sub_kg, shacl_shape=shacl_shape
             )
+
+            # if no errors, then we answer "valid"
+            conforms = len(errors) == 0
             results[str(s)] = {
                 "type": str(o),
                 "ref_profile": ref_profile,
diff --git a/profiles/bs_profiles.json b/profiles/bs_profiles.json
new file mode 100644
index 00000000..07c387fc
--- /dev/null
+++ b/profiles/bs_profiles.json
@@ -0,0 +1 @@
+{"https://bioschemas.org/profiles/ChemicalSubstance/0.4-RELEASE": {"name": "ChemicalSubstance", "target_classes": ["sc:ChemicalSubstance"], "file": "https://raw.githubusercontent.com/BioSchemas/specifications/master/ChemicalSubstance/jsonld/ChemicalSubstance_v0.4-RELEASE.json", "required": ["sc:name", "sc:identifier", "sc:url", "dct:conformsTo"], "recommended": ["sc:chemicalComposition", "sc:hasBioChemEntityPart"], "optional": ["sc:alternateName", "sc:bioChemInteraction", "sc:bioChemSimilarity", "sc:biologicalRole", "sc:chemicalRole", "sc:description", "sc:disambiguatingDescription", "sc:image", "sc:potentialUse", "sc:sameAs"], "id": "bsc:ChemicalSubstance", "ref_profile": "https://bioschemas.org/profiles/ChemicalSubstance/0.4-RELEASE"}, "https://bioschemas.org/profiles/Gene/1.0-RELEASE": {"name": "Gene", "target_classes": ["sc:Gene"], "file": "https://raw.githubusercontent.com/BioSchemas/specifications/master/Gene/jsonld/Gene_v1.0-RELEASE.json", "required": ["sc:identifier", "sc:name", "dct:conformsTo"], "recommended": ["sc:description", "sc:encodesBioChemEntity", "sc:isPartOfBioChemEntity", "sc:url"], "optional": ["sc:alternateName", "sc:alternativeOf", "sc:associatedDisease", "sc:expressedIn", "sc:hasBioChemEntityPart", "sc:hasBioPolymerSequence", "sc:hasMolecularFunction", "sc:hasRepresentation", "bsc:hasStatus", "sc:image", "sc:isInvolvedInBiologicalProcess", "sc:isLocatedInSubcellularLocation", "sc:mainEntityOfPage", "sc:sameAs", "sc:taxonomicRange"], "id": "bsc:Gene", "ref_profile": "https://bioschemas.org/profiles/Gene/1.0-RELEASE"}, "https://bioschemas.org/profiles/Taxon/0.6-RELEASE": {"name": "Taxon", "target_classes": ["sc:Taxon"], "file": "https://raw.githubusercontent.com/BioSchemas/specifications/master/Taxon/jsonld/Taxon_v0.6-RELEASE.json", "required": ["sc:taxonRank", "sc:name", "dct:conformsTo"], "recommended": ["sc:parentTaxon", "sc:url"], "optional": ["sc:additionalType", "sc:alternateName", "sc:childTaxon", "sc:sameAs", "dwc:vernacularName"], "id": "bsc:Taxon", "ref_profile": "https://bioschemas.org/profiles/Taxon/0.6-RELEASE"}, "https://bioschemas.org/profiles/MolecularEntity/0.5-RELEASE": {"name": "MolecularEntity", "target_classes": ["sc:MolecularEntity"], "file": "https://raw.githubusercontent.com/BioSchemas/specifications/master/MolecularEntity/jsonld/MolecularEntity_v0.5-RELEASE.json", "required": ["sc:identifier", "sc:name", "sc:url", "dct:conformsTo"], "recommended": ["sc:inChI", "sc:inChIKey", "sc:iupacName", "sc:molecularFormula", "sc:molecularWeight", "sc:smiles"], "optional": ["sc:alternateName", "sc:associatedDisease", "sc:bioChemInteraction", "sc:bioChemSimilarity", "sc:biologicalRole", "sc:chemicalRole", "sc:description", "sc:disambiguatingDescription", "sc:hasBioChemEntityPart", "sc:hasMolecularFunction", "sc:hasRepresentation", "sc:image", "sc:isEncodedByBioChemEntity", "sc:isInvolvedInBiologicalProcess", "sc:isLocatedInSubcellularLocation", "sc:isPartOfBioChemEntity", "sc:monoisotopicMolecularWeight", "sc:potentialUse", "sc:sameAs", "sc:taxonomicRange"], "id": "bsc:MolecularEntity", "ref_profile": "https://bioschemas.org/profiles/MolecularEntity/0.5-RELEASE"}, "https://bioschemas.org/profiles/Protein/0.11-RELEASE": {"name": "Protein", "target_classes": ["sc:Protein"], "file": "https://raw.githubusercontent.com/BioSchemas/specifications/master/Protein/jsonld/Protein_v0.11-RELEASE.json", "required": ["sc:identifier", "sc:name", "dct:conformsTo"], "recommended": ["sc:associatedDisease", "sc:description", "sc:isEncodedByBioChemEntity", "sc:taxonomicRange", "sc:url"], "optional": ["sc:alternateName", "sc:bioChemInteraction", "sc:bioChemSimilarity", "sc:hasBioChemEntityPart", "sc:hasBioPolymerSequence", "sc:hasMolecularFunction", "sc:hasRepresentation", "sc:image", "sc:isInvolvedInBiologicalProcess", "sc:isLocatedInSubcellularLocation", "sc:isPartOfBioChemEntity", "sc:mainEntityOfPage", "sc:sameAs"], "id": "bsc:Protein", "ref_profile": "https://bioschemas.org/profiles/Protein/0.11-RELEASE"}, "https://bioschemas.org/profiles/FormalParameter/1.0-RELEASE": {"name": "FormalParameter", "target_classes": ["sc:FormalParameter"], "file": "https://raw.githubusercontent.com/BioSchemas/specifications/master/FormalParameter/jsonld/FormalParameter_v1.0-RELEASE.json", "required": ["sc:name", "dct:conformsTo"], "recommended": ["sc:additionalType", "sc:description", "sc:encodingFormat"], "optional": ["sc:defaultValue", "sc:identifier", "sc:valueRequired"], "id": "bsc:FormalParameter", "ref_profile": "https://bioschemas.org/profiles/FormalParameter/1.0-RELEASE"}, "https://bioschemas.org/profiles/ComputationalTool/1.0-RELEASE": {"name": "ComputationalTool", "target_classes": ["sc:SoftwareApplication"], "file": "https://raw.githubusercontent.com/BioSchemas/specifications/master/ComputationalTool/jsonld/ComputationalTool_v1.0-RELEASE.json", "required": ["sc:description", "sc:name", "sc:url", "dct:conformsTo"], "recommended": ["sc:applicationCategory", "sc:applicationSubCategory", "sc:author", "sc:citation", "sc:featureList", "sc:license", "sc:softwareVersion"], "optional": ["sc:applicationSuite", "bsc:codeRepository", "sc:contributor", "sc:discussionUrl", "sc:downloadUrl", "sc:funder", "sc:hasPart", "sc:identifier", "bsc:input", "sc:isAccessibleForFree", "sc:isBasedOn", "sc:isPartOf", "sc:keywords", "sc:operatingSystem", "bsc:output", "bsc:programmingLanguage", "sc:provider", "sc:softwareAddOn", "sc:softwareHelp", "sc:thumbnailUrl"], "id": "bsc:ComputationalTool", "ref_profile": "https://bioschemas.org/profiles/ComputationalTool/1.0-RELEASE"}, "https://bioschemas.org/profiles/ComputationalWorkflow/1.0-RELEASE": {"name": "ComputationalWorkflow", "target_classes": ["sc:ComputationalWorkflow"], "file": "https://raw.githubusercontent.com/BioSchemas/specifications/master/ComputationalWorkflow/jsonld/ComputationalWorkflow_v1.0-RELEASE.json", "required": ["bsc:input", "bsc:output", "bsc:programmingLanguage", "sc:name", "sc:url", "sc:creator", "sc:dateCreated", "sc:license", "sc:sdPublisher", "sc:version", "dct:conformsTo"], "recommended": ["sc:citation", "sc:contributor", "sc:creativeWorkStatus", "sc:description", "sc:documentation", "sc:funding", "sc:hasPart", "sc:isBasedOn", "sc:keywords", "sc:maintainer", "sc:producer", "sc:publisher", "sc:runtimePlatform", "sc:softwareRequirements", "sc:targetProduct"], "optional": ["sc:alternateName", "sc:conditionsOfAccess", "sc:dateModified", "sc:datePublished", "sc:encodingFormat", "sc:identifier", "sc:image"], "id": "bsc:ComputationalWorkflow", "ref_profile": "https://bioschemas.org/profiles/ComputationalWorkflow/1.0-RELEASE"}, "https://bioschemas.org/profiles/DataCatalog/0.3-RELEASE-2019_07_01": {"name": "DataCatalog", "target_classes": ["sc:DataCatalog"], "file": "https://raw.githubusercontent.com/BioSchemas/specifications/master/DataCatalog/jsonld/DataCatalog_v0.3-RELEASE-2019_07_01.json", "required": ["sc:description", "sc:name", "sc:url", "sc:keywords", "sc:provider", "dct:conformsTo"], "recommended": ["sc:about", "sc:alternateName", "sc:citation", "sc:dataset", "sc:dateCreated", "sc:identifier", "sc:license", "sc:sourceOrganization"], "optional": ["sc:dateModified", "sc:encodingFormat"], "id": "bsc:DataCatalog", "ref_profile": "https://bioschemas.org/profiles/DataCatalog/0.3-RELEASE-2019_07_01"}, "https://bioschemas.org/profiles/Dataset/1.0-RELEASE": {"name": "Dataset", "target_classes": ["sc:Dataset"], "file": "https://raw.githubusercontent.com/BioSchemas/specifications/master/Dataset/jsonld/Dataset_v1.0-RELEASE.json", "required": ["sc:description", "sc:identifier", "sc:keywords", "sc:license", "sc:name", "sc:url", "dct:conformsTo"], "recommended": ["sc:alternateName", "sc:citation", "sc:creator", "sc:datePublished", "sc:distribution", "sc:includedInDataCatalog", "sc:isBasedOn", "sc:measurementTechnique", "sc:variableMeasured", "sc:version"], "optional": ["sc:dateCreated", "sc:dateModified", "sc:hasPart", "sc:isAccessibleForFree", "sc:isPartOf", "sc:maintainer", "sc:publisher", "sc:sameAs"], "id": "bsc:Dataset", "ref_profile": "https://bioschemas.org/profiles/Dataset/1.0-RELEASE"}, "https://bioschemas.org/profiles/Sample/0.2-RELEASE-2018_11_10": {"name": "Sample", "target_classes": ["bioschemastypesdrafts:Sample"], "file": "https://raw.githubusercontent.com/BioSchemas/specifications/master/Sample/jsonld/Sample_v0.2-RELEASE-2018_11_10.json", "required": ["sc:identifier", "dct:conformsTo"], "recommended": ["sc:url"], "optional": ["sc:additionalProperty", "sc:description", "sc:name", "sc:subjectOf"], "id": "bsc:Sample", "ref_profile": "https://bioschemas.org/profiles/Sample/0.2-RELEASE-2018_11_10"}, "https://bioschemas.org/profiles/Course/1.0-RELEASE": {"name": "Course", "target_classes": ["sc:Course"], "file": "https://raw.githubusercontent.com/BioSchemas/specifications/master/Course/jsonld/Course_v1.0-RELEASE.json", "required": ["sc:description", "sc:keywords", "sc:name", "dct:conformsTo"], "recommended": ["sc:about", "sc:abstract", "sc:aggregateRating", "sc:citation", "sc:coursePrerequisites", "sc:educationalLevel", "sc:hasCourseInstance", "sc:license", "sc:mentions", "sc:provider", "sc:teaches", "sc:timeRequired", "sc:url"], "optional": ["sc:accessibilitySummary", "sc:alternateName", "sc:audience", "sc:comment", "sc:commentCount", "sc:courseCode", "sc:creator", "sc:dateCreated", "sc:dateModified", "sc:educationalCredentialAwarded", "sc:hasPart", "sc:image", "sc:isBasedOn", "sc:thumbnailUrl"], "id": "bsc:Course", "ref_profile": "https://bioschemas.org/profiles/Course/1.0-RELEASE"}, "https://bioschemas.org/profiles/CourseInstance/1.0-RELEASE": {"name": "CourseInstance", "target_classes": ["sc:CourseInstance"], "file": "https://raw.githubusercontent.com/BioSchemas/specifications/master/CourseInstance/jsonld/CourseInstance_v1.0-RELEASE.json", "required": ["sc:courseMode", "sc:location", "dct:conformsTo"], "recommended": ["sc:endDate", "sc:inLanguage", 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"optional": ["sc:accessibilitySummary", "sc:contributor", "sc:creativeWorkStatus", "sc:dateCreated", "sc:dateModified", "sc:datePublished", "sc:hasPart", "sc:isPartOf", "sc:recordedAt", "sc:version", "sc:workTranslation"], "id": "bsc:TrainingMaterial", "ref_profile": "https://bioschemas.org/profiles/TrainingMaterial/1.0-RELEASE"}, "https://bioschemas.org/profiles/Disease/0.2-DRAFT": {"name": "Disease", "target_classes": ["sc:MedicalCondition"], "file": "https://raw.githubusercontent.com/BioSchemas/specifications/master/Disease/jsonld/Disease_v0.2-DRAFT.json", "required": ["sc:identifier", "sc:name", "dct:conformsTo"], "recommended": ["sc:drug", "sc:description", "sc:image", "sc:url", "sc:sameAs"], "optional": ["sc:alternateName", "sc:disambiguatingDescription"], "id": "bscdrafts:Disease", "ref_profile": "https://bioschemas.org/profiles/Disease/0.2-DRAFT"}, "https://bioschemas.org/profiles/Event/0.3-DRAFT": {"name": "Event", "target_classes": ["sc:Event"], "file": "https://raw.githubusercontent.com/BioSchemas/specifications/master/Event/jsonld/Event_v0.3-DRAFT.json", "required": ["bioschemasdrafts:contact", "sc:description", "sc:endDate", "bioschemasdrafts:eventType", "bioschemasdrafts:hostInstitution", "bioschemasdrafts:location", "sc:name", "sc:startDate", "dct:conformsTo"], "recommended": ["bioschemasdrafts:accreditation", "sc:alternateName", "bioschemasdrafts:audience", "bioschemasdrafts:deadline", "bioschemasdrafts:eligibility", "bioschemasdrafts:keywords", "sc:maximumAttendeeCapacity", "bioschemasdrafts:prerequisite", "bioschemasdrafts:programme", "bioschemasdrafts:topic", "sc:url", "sc:sameAs"], "optional": ["bioschemasdrafts:acceptanceNotificationDate", "bioschemasdrafts:attachment", "bioschemasdrafts:dateModified", "sc:identifier", "sc:offers", "sc:performer", "bioschemasdrafts:registrationStatus", "sc:review", "bioschemasdrafts:socialMedia", "sc:sponsor", "sc:subEvent", "bioschemasdrafts:submitter", "sc:superEvent"], "id": 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"target_classes": ["sc:Person"], "file": "https://raw.githubusercontent.com/BioSchemas/specifications/master/Person/jsonld/Person_v0.3-DRAFT.json", "required": ["sc:description", "sc:mainEntityOfPage", "sc:name", "dct:conformsTo"], "recommended": ["sc:email", "bioschemasdrafts:expertise", "sc:homeLocation", "sc:image", "sc:memberOf", "bioschemasdrafts:orcid", "sc:worksFor", "sc:sameAs"], "optional": ["bioschemasdrafts:advisor", "bioschemasdrafts:curriculumVitae", "bioschemasdrafts:experience", "sc:funding", "bioschemasdrafts:interest", "bioschemasdrafts:internatonalActivities", "bioschemasdrafts:journalReferee", "bioschemasdrafts:keywords", "sc:knowsLanguage", "bioschemasdrafts:works"], "id": "bscdrafts:Person", "ref_profile": "https://bioschemas.org/profiles/Person/0.3-DRAFT"}, "https://bioschemas.org/profiles/Phenotype/0.2-DRAFT": {"name": "Phenotype", "target_classes": ["bioschemastypesdrafts:Phenotype"], "file": 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diff --git a/static/css/app.css b/static/css/app.css
index bcb8f7cb..70e63b0b 100644
--- a/static/css/app.css
+++ b/static/css/app.css
@@ -314,3 +314,9 @@ ul {
 
 #vocab_interpret a:link { color: #0000EE; }
 #vocab_interpret a:visited { color: #551A8B; }
+
+hr[name="bs_report_sep"] {
+  background-color: #dbdbdb!important;
+  width: 50%;
+  margin-inline: auto;
+}
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diff --git a/static/data/identifiers.org.dump.json b/static/data/identifiers.org.dump.json
index 32648fa1..704ff0ba 100644
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First, they are divided into 15 anatomical groups (1st level), classified as QA-QV in the ATCvet system, on the basis of their main therapeutic use.", "created": "2019-06-11T14:16:40.712+0000", "modified": "2019-06-11T14:16:40.712+0000", "resources": [{"id": 784, "mirId": "MIR:00100344", "urlPattern": "http://www.whocc.no/atcvet/atcvet_index/?code={$id}", "name": "Anatomical Therapeutic Chemical Vet Index at WHO", "description": "Anatomical Therapeutic Chemical Vet Index at WHO", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "QJ51RV02", "resourceHomeUrl": "http://www.whocc.no/atcvet/atcvet_index/", "institution": {"id": 295, "name": "World Health Organisation", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "CH", "countryName": "Switzerland"}}, "location": {"countryCode": "CH", "countryName": "Switzerland"}, "deprecated": false, "deprecationDate": null}], "sampleId": "QJ51RV02", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 785, "prefix": "phenolexplorer", "mirId": "MIR:00000268", "name": "Phenol-Explorer", "pattern": "^\\d+$", "description": "Phenol-Explorer is an electronic database on polyphenol content in foods. 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This information includes 'brand name', 'route of administration' and a Canadian 'Drug Identification Number' (DIN).", "created": "2019-06-11T14:16:41.852+0000", "modified": "2019-06-11T14:16:41.852+0000", "resources": [{"id": 799, "mirId": "MIR:00100351", "urlPattern": "http://webprod3.hc-sc.gc.ca/dpd-bdpp/info.do?lang=eng&code={$id}", "name": "Canadian Drug Identification Number at Health Canada", "description": "Canadian Drug Identification Number at Health Canada", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "63250", "resourceHomeUrl": "http://webprod3.hc-sc.gc.ca/dpd-bdpp/index-eng.jsp", "institution": {"id": 798, "name": "Health Canada, Ottawa, Ontario", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "CA", "countryName": "Canada"}}, "location": {"countryCode": "CA", "countryName": "Canada"}, "deprecated": false, "deprecationDate": null}], "sampleId": "63250", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 800, "prefix": "massbank", "mirId": "MIR:00000273", "name": "MassBank", "pattern": "^[A-Z]{2}[A-Z0-9][0-9]{5}$", "description": "MassBank is a federated database of reference spectra from different instruments, including high-resolution mass spectra of small metabolites (<3000 Da).", "created": "2019-06-11T14:16:42.071+0000", "modified": "2019-06-11T14:16:42.071+0000", "resources": [{"id": 802, "mirId": "MIR:00100353", "urlPattern": "http://www.massbank.jp/RecordDisplay?id={$id}", "name": "MassBank in Japan", "description": "MassBank in Japan", "official": true, "providerCode": "CURATOR_REVIEW", "sampleId": "PB000166", "resourceHomeUrl": "http://www.massbank.jp", "institution": {"id": 801, "name": "The MassBank Consortium", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "JP", "countryName": "Japan"}}, "location": {"countryCode": "JP", "countryName": "Japan"}, "deprecated": false, "deprecationDate": null}, {"id": 804, "mirId": "MIR:00100666", "urlPattern": "https://massbank.eu/MassBank/RecordDisplay?id={$id}", "name": "MassBank in Europe", "description": "MassBank in Europe", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "PB000166", "resourceHomeUrl": "https://massbank.eu/", "institution": {"id": 803, "name": "NORMAN Network and The MassBank Consortium", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "DE", "countryName": "Germany"}}, "location": {"countryCode": "DE", "countryName": "Germany"}, "deprecated": false, "deprecationDate": null}], "sampleId": "PB000166", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 805, "prefix": "gmd", "mirId": "MIR:00000274", "name": "Golm Metabolome Database", "pattern": "^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$", "description": "Golm Metabolome Database (GMD) provides public access to custom mass spectral libraries, metabolite profiling experiments as well as additional information and tools. 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This collection references groupings of orthologs.", "created": "2019-06-11T14:16:57.285+0000", "modified": "2019-06-11T14:16:57.285+0000", "resources": [{"id": 986, "mirId": "MIR:00100438", "urlPattern": "https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayGroup&p1={$id}", "name": "OMA Group through OMA browser at ETH Zurich", "description": "OMA Group through OMA browser at ETH Zurich", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "LCSCCPN", "resourceHomeUrl": "https://omabrowser.org/cgi-bin/gateway.pl", "institution": {"id": 983, "name": "ETH Zurich, Computer Science, Zurich", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "CH", "countryName": "Switzerland"}}, "location": {"countryCode": "CH", "countryName": "Switzerland"}, "deprecated": false, "deprecationDate": null}], "sampleId": "LCSCCPN", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 987, "prefix": "ncbiprotein", "mirId": "MIR:00000344", "name": "NCBI Protein", "pattern": "^(\\w+\\d+(\\.\\d+)?)|(NP_\\d+)$", "description": "The Protein database is a collection of sequences from several sources, including translations from annotated coding regions in GenBank, RefSeq and TPA, as well as records from SwissProt, PIR, PRF, and PDB.", "created": "2019-06-11T14:16:57.477+0000", "modified": "2019-06-11T14:16:57.477+0000", "resources": [{"id": 988, "mirId": "MIR:00100439", "urlPattern": "https://www.ncbi.nlm.nih.gov/protein/{$id}", "name": "NCBI Protein at NCBI", "description": "NCBI Protein at NCBI", "official": false, "providerCode": "ncbi", "sampleId": "CAA71118.1", "resourceHomeUrl": "https://www.ncbi.nlm.nih.gov/protein", "institution": {"id": 26, "name": "National Center for Biotechnology Information", "homeUrl": "https://www.ncbi.nlm.nih.gov/", "description": "The National Center for Biotechnology Information advances science and health by providing access to biomedical and genomic 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"institution": {"id": 26, "name": "National Center for Biotechnology Information", "homeUrl": "https://www.ncbi.nlm.nih.gov/", "description": "The National Center for Biotechnology Information advances science and health by providing access to biomedical and genomic information.", "rorId": "https://ror.org/02meqm098", "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}], "sampleId": "CAA71118.1", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 991, "prefix": "unigene", "mirId": "MIR:00000346", "name": "UniGene", "pattern": "^\\d+$", "description": "A UniGene entry is a set of transcript sequences that appear to come from the same transcription locus (gene or expressed pseudogene), together with information on protein similarities, gene expression, cDNA clone reagents, and genomic location.", "created": "2019-06-11T14:16:57.856+0000", "modified": "2019-06-11T14:16:57.856+0000", "resources": [{"id": 993, "mirId": "MIR:00100441", "urlPattern": "http://www.ncbi.nlm.nih.gov/UniGene/clust.cgi?UGID={$id}", "name": "UniGene at NCBI", "description": "UniGene at NCBI", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "4900", "resourceHomeUrl": "http://www.ncbi.nlm.nih.gov/unigene", "institution": {"id": 26, "name": "National Center for Biotechnology Information", "homeUrl": "https://www.ncbi.nlm.nih.gov/", "description": "The National Center for Biotechnology Information advances science and health by providing access to biomedical and genomic information.", "rorId": "https://ror.org/02meqm098", "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}], "sampleId": "4900", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 994, "prefix": "bitterdb.rec", "mirId": "MIR:00000347", "name": "BitterDB Receptor", "pattern": "^\\d+$", "description": "BitterDB is a database of compounds reported to taste bitter to humans. 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This collection references receptors.", "created": "2019-06-11T14:16:58.089+0000", "modified": "2019-06-11T14:16:58.089+0000", "resources": [{"id": 996, "mirId": "MIR:00100442", "urlPattern": "http://bitterdb.agri.huji.ac.il/Receptor.php?id={$id}", "name": "BitterDB Receptor at The Hebrew University of Jerusalem", "description": "BitterDB Receptor at The Hebrew University of Jerusalem", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "1", "resourceHomeUrl": "http://bitterdb.agri.huji.ac.il/dbbitter.php", "institution": {"id": 995, "name": "The Robert H Smith Faculty of Agriculture, Food and Environment, The Institute of Biochemistry, Food Science and Nutrition, The Hebrew University of Jerusalem, Rehovot", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "IL", "countryName": "Israel"}}, "location": {"countryCode": "IL", "countryName": "Israel"}, "deprecated": false, "deprecationDate": null}], "sampleId": "1", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 997, "prefix": "bitterdb.cpd", "mirId": "MIR:00000348", "name": "BitterDB Compound", "pattern": "^\\d+$", "description": "BitterDB is a database of compounds reported to taste bitter to humans. 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It includes reference samples, such as cell lines, which are repeatedly used in experiments. Accession numbers for the reference samples will be exchanged with a similar database at NCBI, and DDBJ (Japan). Record access may be affected due to different release cycles and inter-institutional synchronisation.", "created": "2019-06-11T14:16:59.017+0000", "modified": "2019-06-11T14:16:59.017+0000", "resources": [{"id": 1005, "mirId": "MIR:00100447", "urlPattern": "https://www.ebi.ac.uk/biosamples/sample/{$id}", "name": "BioSamples Database at EBI", "description": "BioSamples Database at EBI", "official": true, "providerCode": "ebi", "sampleId": "SAMEA2397676", "resourceHomeUrl": "https://www.ebi.ac.uk/biosamples/", "institution": {"id": 2, "name": "European Bioinformatics Institute", "homeUrl": "https://www.ebi.ac.uk", "description": "At EMBL-EBI, we make the world\u2019s public biological data freely available to the scientific community via a range of services and tools, perform basic research and provide professional training in bioinformatics. \nWe are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states.", "rorId": "https://ror.org/02catss52", "location": {"countryCode": "GB", "countryName": "United Kingdom"}}, "location": {"countryCode": "GB", "countryName": "United Kingdom"}, "deprecated": false, "deprecationDate": null}, {"id": 1006, "mirId": "MIR:00100706", "urlPattern": "http://www.ncbi.nlm.nih.gov/biosample?term={$id}", "name": "BioSample at NCBI", "description": "BioSample at NCBI", "official": false, "providerCode": "ncbi", "sampleId": "SAMN00000002", "resourceHomeUrl": "http://www.ncbi.nlm.nih.gov/biosample", "institution": {"id": 26, "name": "National Center for Biotechnology Information", "homeUrl": "https://www.ncbi.nlm.nih.gov/", "description": "The National Center for Biotechnology Information advances science and health by providing access to biomedical and genomic information.", "rorId": "https://ror.org/02meqm098", "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}, {"id": 1008, "mirId": "MIR:00100707", "urlPattern": "http://trace.ddbj.nig.ac.jp/BSSearch/biosample?acc={$id}", "name": "BioSample at DNA Data Bank of Japan", "description": "BioSample at DNA Data Bank of Japan", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "SAMD00005257", "resourceHomeUrl": "http://trace.ddbj.nig.ac.jp/biosample/", "institution": {"id": 1007, "name": "Institution DNA Data Bank of Japan, Shizuoka", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "JP", "countryName": "Japan"}}, "location": {"countryCode": "JP", "countryName": "Japan"}, "deprecated": false, "deprecationDate": null}], "sampleId": "SAMEA2397676", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1009, "prefix": "piroplasma", "mirId": "MIR:00000351", "name": "PiroplasmaDB", "pattern": "^TA\\d+$", "description": "PiroplasmaDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera.", "created": "2019-06-11T14:16:59.494+0000", "modified": "2019-06-11T14:16:59.494+0000", "resources": [{"id": 1011, "mirId": "MIR:00100448", "urlPattern": "http://piroplasmadb.org/piro/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id={$id}", "name": "PiroplasmaBD at EuPathDB", "description": "PiroplasmaBD at EuPathDB", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "TA14985", "resourceHomeUrl": "http://piroplasmadb.org/", "institution": {"id": 1010, "name": "Center for Tropical &amp; Emerging Global Diseases, University of Georgia, Georgia", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}], "sampleId": "TA14985", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1012, "prefix": "unite", "mirId": "MIR:00000352", "name": "Unite", "pattern": "^UDB\\d{6}$", "description": "UNITE is a fungal rDNA internal transcribed spacer (ITS) sequence database. 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The families in Rfam break down into three broad functional classes: non-coding RNA genes, structured cis-regulatory elements and self-splicing RNAs. Typically these functional RNAs often have a conserved secondary structure which may be better preserved than the RNA sequence. The CMs used to describe each family are a slightly more complicated relative of the profile hidden Markov models (HMMs) used by Pfam. CMs can simultaneously model RNA sequence and the structure in an elegant and accurate fashion.", "created": "2019-06-11T14:17:14.331+0000", "modified": "2019-06-11T14:17:14.331+0000", "resources": [{"id": 1188, "mirId": "MIR:00100686", "urlPattern": "https://rfam.xfam.org/family/{$id}", "name": "Rfam at EMBL-EBI", "description": "Rfam at EMBL-EBI", "official": true, "providerCode": "ebi", "sampleId": "RF00230", "resourceHomeUrl": "https://rfam.xfam.org/", "institution": {"id": 2, "name": "European Bioinformatics Institute", "homeUrl": "https://www.ebi.ac.uk", "description": "At EMBL-EBI, we make the world\u2019s public biological data freely available to the scientific community via a range of services and tools, perform basic research and provide professional training in bioinformatics. \nWe are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states.", "rorId": "https://ror.org/02catss52", "location": {"countryCode": "GB", "countryName": "United Kingdom"}}, "location": {"countryCode": "GB", "countryName": "United Kingdom"}, "deprecated": false, "deprecationDate": null}], "sampleId": "RF00230", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1189, "prefix": "fbol", "mirId": "MIR:00000410", "name": "Fungal Barcode", "pattern": "^\\d+$", "description": "DNA barcoding is the use of short standardised segments of the genome for identification of species in all the Kingdoms of Life. The goal of the Fungal Barcoding site is to promote the DNA barcoding of fungi and other fungus-like organisms.", "created": "2019-06-11T14:17:14.533+0000", "modified": "2019-06-11T14:17:14.533+0000", "resources": [{"id": 1191, "mirId": "MIR:00100532", "urlPattern": "http://www.fungalbarcoding.org/BioloMICS.aspx?Table=Fungal barcodes&Rec={$id}&Fields=All&ExactMatch=T", "name": "Fungal Barcode at Fungal Biodiversity Centre", "description": "Fungal Barcode at Fungal Biodiversity Centre", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "2224", "resourceHomeUrl": "http://www.fungalbarcoding.org/", "institution": {"id": 1190, "name": "Fungal Biodiversity Centre, Utrecht", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "NL", "countryName": "Netherlands"}}, "location": {"countryCode": "NL", "countryName": "Netherlands"}, "deprecated": false, "deprecationDate": null}], "sampleId": "2224", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1192, "prefix": "aftol.taxonomy", "mirId": "MIR:00000411", "name": "AFTOL", "pattern": "^\\d+$", "description": "The Assembling the Fungal Tree of Life (AFTOL) project is dedicated to significantly enhancing our understanding of the evolution of the Kingdom Fungi, which represents one of the major clades of life. There are roughly 80,000 described species of Fungi, but the actual diversity in the group has been estimated to be about 1.5 million species.", "created": "2019-06-11T14:17:14.756+0000", "modified": "2019-06-11T14:17:14.756+0000", "resources": [{"id": 1194, "mirId": "MIR:00100533", "urlPattern": "http://wasabi.lutzonilab.net/pub/displayTaxonInfo?aftol_id={$id}", "name": "AFTOL at University of Minnesota", "description": "AFTOL at University of Minnesota", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "959", "resourceHomeUrl": "http://aftol.org/data.php", "institution": {"id": 1193, "name": "Department of Plant Biology, University of Minnesota, Minnesota", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}], "sampleId": "959", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1195, "prefix": "aspgd.locus", "mirId": "MIR:00000412", "name": "AspGD Locus", "pattern": "^[A-Za-z_0-9]+$", "description": "The Aspergillus Genome Database (AspGD) is a repository for information relating to fungi of the genus Aspergillus, which includes organisms of clinical, agricultural and industrial importance. AspGD facilitates comparative genomics by providing a full-featured genomics viewer, as well as matched and standardized sets of genomic information for the sequenced aspergilli. This collection references gene information.", "created": "2019-06-11T14:17:14.975+0000", "modified": "2019-06-11T14:17:14.975+0000", "resources": [{"id": 1197, "mirId": "MIR:00100534", "urlPattern": "http://www.aspergillusgenome.org/cgi-bin/locus.pl?dbid={$id}", "name": "AspGD at Stanford Medical School", "description": "AspGD at Stanford Medical School", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "ASPL0000349247", "resourceHomeUrl": "http://www.aspgd.org/", "institution": {"id": 1196, "name": "Department of Genetics, Stanford University Medical School, Stanford, California", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}], "sampleId": "ASPL0000349247", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1198, "prefix": "aspgd.protein", "mirId": "MIR:00000413", "name": "AspGD Protein", "pattern": "^[A-Za-z_0-9]+$", "description": "The Aspergillus Genome Database (AspGD) is a repository for information relating to fungi of the genus Aspergillus, which includes organisms of clinical, agricultural and industrial importance. AspGD facilitates comparative genomics by providing a full-featured genomics viewer, as well as matched and standardized sets of genomic information for the sequenced aspergilli. This collection references protein information.", "created": "2019-06-11T14:17:15.227+0000", "modified": "2019-06-11T14:17:15.227+0000", "resources": [{"id": 1199, "mirId": "MIR:00100535", "urlPattern": "http://www.aspergillusgenome.org/cgi-bin/protein/proteinPage.pl?dbid={$id}", "name": "AspGD Protein at Stanford Medical School", "description": "AspGD Protein at Stanford Medical School", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "ASPL0000349247", "resourceHomeUrl": "http://www.aspgd.org/", "institution": {"id": 1196, "name": "Department of Genetics, Stanford University Medical School, Stanford, California", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}], "sampleId": "ASPL0000349247", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1237, "prefix": "ndc", "mirId": "MIR:00000431", "name": "National Drug Code", "pattern": "^\\d+\\-\\d+\\-\\d+", "description": "The National Drug Code (NDC) is a unique, three-segment number used by the Food and Drug Administration (FDA) to identify drug products for commercial use. This is required by the Drug Listing Act of 1972. The FDA publishes and updates the listed NDC numbers daily.", "created": "2019-06-11T14:17:18.754+0000", "modified": "2019-06-11T14:17:18.754+0000", "resources": [{"id": 1239, "mirId": "MIR:00100554", "urlPattern": "http://www.hipaaspace.com/Medical_Billing/Coding/National.Drug.Codes/{$id}", "name": "National Drug Code at Food and Drug Administration", "description": "National Drug Code at Food and Drug Administration", "official": true, "providerCode": "CURATOR_REVIEW", "sampleId": "0002-1975-61", "resourceHomeUrl": "http://www.accessdata.fda.gov/scripts/cder/ndc/", "institution": {"id": 1238, "name": "U.S. Food and Drug Administration, Maryland", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}, {"id": 1240, "mirId": "MIR:00100700", "urlPattern": "http://ndc.bio2rdf.org/describe/?url=http://bio2rdf.org/ndc:{$id}", "name": "Bio2RDF", "description": "Bio2RDF", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "0002-1975-61", "resourceHomeUrl": "http://ndc.bio2rdf.org/fct", "institution": {"id": 33, "name": "Bio2RDF.org", "homeUrl": "https://bio2rdf.org", "description": "Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.", "rorId": null, "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}], "sampleId": "0002-1975-61", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1200, "prefix": "autdb", "mirId": "MIR:00000415", "name": "AutDB", "pattern": "^[A-Z]+[A-Z-0-9]{2,}$", "description": "AutDB is a curated database for autism research. It is built on information extracted from the studies on molecular genetics and biology of Autism Spectrum Disorders (ASD). The four modules of AutDB include information on Human Genes, Animal models, Protein Interactions (PIN) and Copy Number Variants (CNV) respectively. It provides an annotated list of ASD candidate genes in the form of reference dataset for interrogating molecular mechanisms underlying the disorder.", "created": "2019-06-11T14:17:15.426+0000", "modified": "2019-06-11T14:17:15.426+0000", "resources": [{"id": 1202, "mirId": "MIR:00100538", "urlPattern": "http://autism.mindspec.org/GeneDetail/{$id}", "name": "AutDB at MindSpec", "description": "AutDB at MindSpec", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "ADA", "resourceHomeUrl": "http://autism.mindspec.org/autdb/", "institution": {"id": 1201, "name": "MindSpec Inc., Fairfax, Virginia", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}], "sampleId": "ADA", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1203, "prefix": "bacmap.map", "mirId": "MIR:00000416", "name": "BacMap Map", "pattern": "^\\w+(\\_)?\\d+(\\.\\d+)?$", "description": "BacMap is an electronic, interactive atlas of fully sequenced bacterial genomes. It contains labeled, zoomable and searchable chromosome maps for sequenced prokaryotic (archaebacterial and eubacterial) species. Each map can be zoomed to the level of individual genes and each gene is hyperlinked to a richly annotated gene card. All bacterial genome maps are supplemented with separate prophage genome maps as well as separate tRNA and rRNA maps. Each bacterial chromosome entry in BacMap contains graphs and tables on a variety of gene and protein statistics. Likewise, every bacterial species entry contains a bacterial 'biography' card, with taxonomic details, phenotypic details, textual descriptions and images. This collection references genome map information.", "created": "2019-06-11T14:17:15.634+0000", "modified": "2019-06-11T14:17:15.634+0000", "resources": [{"id": 1204, "mirId": "MIR:00100539", "urlPattern": "http://bacmap.wishartlab.com/maps/{$id}/index.html", "name": "BacMap Genome Map at University of Alberta", "description": "BacMap Genome Map at University of Alberta", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "AP011135", "resourceHomeUrl": "http://bacmap.wishartlab.com/", "institution": {"id": 1037, "name": "Department of Computing Science, Food and Nutritional Science, University of Alberta, Edmonton", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "CA", "countryName": "Canada"}}, "location": {"countryCode": "CA", "countryName": "Canada"}, "deprecated": false, "deprecationDate": null}], "sampleId": "AP011135", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1205, "prefix": "bgee.family", "mirId": "MIR:00000417", "name": "Bgee family", "pattern": "^(ENSFM|ENSGTV:)\\d+$", "description": "Bgee is a database of gene expression patterns within particular anatomical structures within a species, and between different animal species. This collection refers to expression across species.", "created": "2019-06-11T14:17:15.821+0000", "modified": "2019-06-11T14:17:15.821+0000", "resources": [{"id": 1207, "mirId": "MIR:00100540", "urlPattern": "http://bgee.unil.ch/bgee/bgee?page=gene_family&action=family_details&gene_family_id={$id}", "name": "Bgee at Lausanne", "description": "Bgee at Lausanne", "official": false, "providerCode": "sib", "sampleId": "ENSFM00500000270089", "resourceHomeUrl": "http://bgee.unil.ch/bgee/bgee", "institution": {"id": 1730, "name": "SIB Swiss Institute of Bioinformatics", "homeUrl": "https://www.sib.swiss", "description": "SIB provides bioinformatics services and resources for scientists and clinicians from academia and industry in Switzerland and worldwide.", "rorId": "https://ror.org/002n09z45", "location": {"countryCode": "CH", "countryName": "Switzerland"}}, "location": {"countryCode": "CH", "countryName": "Switzerland"}, "deprecated": false, "deprecationDate": null}], "sampleId": "ENSFM00500000270089", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1208, "prefix": "bgee.gene", "mirId": "MIR:00000418", "name": "Bgee gene", "pattern": "^[A-Za-z]+\\d+$", "description": "Bgee is a database to retrieve and compare gene expression patterns in multiple species, produced from multiple data types (RNA-Seq, Affymetrix, in situ hybridization, and EST data). This collection references genes in Bgee.", "created": "2019-06-11T14:17:16.067+0000", "modified": "2019-06-11T14:17:16.067+0000", "resources": [{"id": 1210, "mirId": "MIR:00100541", "urlPattern": "https://bgee.org/?page=gene&gene_id={$id}", "name": "Bgee gene", "description": "Bgee gene", "official": false, "providerCode": "sib", "sampleId": "FBgn0000015", "resourceHomeUrl": "https://bgee.org/", "institution": {"id": 1730, "name": "SIB Swiss Institute of Bioinformatics", "homeUrl": "https://www.sib.swiss", "description": "SIB provides bioinformatics services and resources for scientists and clinicians from academia and industry in Switzerland and worldwide.", "rorId": "https://ror.org/002n09z45", "location": {"countryCode": "CH", "countryName": "Switzerland"}}, "location": {"countryCode": "CH", "countryName": "Switzerland"}, "deprecated": false, "deprecationDate": null}], "sampleId": "FBgn0000015", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1211, "prefix": "bgee.stage", "mirId": "MIR:00000419", "name": "Bgee stage", "pattern": "^(FBvd|XtroDO|HsapDO|MmusDO)\\:\\d+$", "description": "Bgee is a database of gene expression patterns within particular anatomical structures within a species, and between different animal species. This collection refers to developmental stages.", "created": "2019-06-11T14:17:16.333+0000", "modified": "2019-06-11T14:17:16.333+0000", "resources": [{"id": 1212, "mirId": "MIR:00100542", "urlPattern": "http://bgee.unil.ch/bgee/bgee?page=anatomy&action=organs&stage_id={$id}&stage_children=on", "name": "Bgee at Lausanne", "description": "Bgee at Lausanne", "official": false, "providerCode": "sib", "sampleId": "HsapDO:0000004", "resourceHomeUrl": "http://bgee.unil.ch/bgee/bgee", "institution": {"id": 1730, "name": "SIB Swiss Institute of Bioinformatics", "homeUrl": "https://www.sib.swiss", "description": "SIB provides bioinformatics services and resources for scientists and clinicians from academia and industry in Switzerland and worldwide.", "rorId": "https://ror.org/002n09z45", "location": {"countryCode": "CH", "countryName": "Switzerland"}}, "location": {"countryCode": "CH", "countryName": "Switzerland"}, "deprecated": false, "deprecationDate": null}], "sampleId": "HsapDO:0000004", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1213, "prefix": "bgee.organ", "mirId": "MIR:00000420", "name": "Bgee organ", "pattern": "^(XAO|ZFA|EHDAA|EMAPA|EV|MA)\\:\\d+$", "description": "Bgee is a database of gene expression patterns within particular anatomical structures within a species, and between different animal species. This collection refers to anatomical structures.", "created": "2019-06-11T14:17:16.514+0000", "modified": "2019-06-11T14:17:16.514+0000", "resources": [{"id": 1214, "mirId": "MIR:00100543", "urlPattern": "http://bgee.unil.ch/bgee/bgee?page=anatomy&action=organ_details&organ_id={$id}&organ_children=on", "name": "Bgee at Lausanne", "description": "Bgee at Lausanne", "official": false, "providerCode": "sib", "sampleId": "EHDAA:2185", "resourceHomeUrl": "http://bgee.unil.ch/bgee/bgee", "institution": {"id": 1730, "name": "SIB Swiss Institute of Bioinformatics", "homeUrl": "https://www.sib.swiss", "description": "SIB provides bioinformatics services and resources for scientists and clinicians from academia and industry in Switzerland and worldwide.", "rorId": "https://ror.org/002n09z45", "location": {"countryCode": "CH", "countryName": "Switzerland"}}, "location": {"countryCode": "CH", "countryName": "Switzerland"}, "deprecated": false, "deprecationDate": null}], "sampleId": "EHDAA:2185", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1215, "prefix": "biocarta.pathway", "mirId": "MIR:00000421", "name": "BioCarta Pathway", "pattern": "^([hm]\\_)?\\w+Pathway$", "description": "BioCarta is a supplier and distributor of characterized reagents and assays for biopharmaceutical and academic research. It catalogs community produced online maps depicting molecular relationships from areas of active research, generating classical pathways as well as suggestions for new pathways. This collections references pathway maps.", "created": "2019-06-11T14:17:16.688+0000", "modified": "2019-06-11T14:17:16.688+0000", "resources": [{"id": 1216, "mirId": "MIR:00100544", "urlPattern": "https://cgap.nci.nih.gov/Pathways/BioCarta/{$id}", "name": "BioCarta Pathway at NCI", "description": "BioCarta Pathway at NCI", "official": true, "providerCode": "CURATOR_REVIEW", "sampleId": "h_aktPathway", "resourceHomeUrl": "https://www.biocarta.com/", "institution": {"id": 442, "name": "National Cancer Institute, Center for Bioinformatics, Maryland", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}], "sampleId": "h_aktPathway", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1217, "prefix": "panther.pthcmp", "mirId": "MIR:00000422", "name": "PANTHER Pathway Component", "pattern": "^G|P|U|C|S\\d{5}$", "description": "The PANTHER (Protein ANalysis THrough Evolutionary Relationships) Classification System is a resource that classifies genes by their functions, using published scientific experimental evidence and evolutionary relationships to predict function even in the absence of direct experimental evidence. The PANTHER Pathway Component collection references specific classes of molecules that play the same mechanistic role within a pathway, across species. Pathway\r\ncomponents may be proteins, genes/DNA, RNA, or simple molecules. Where the identified component is a protein, DNA, or transcribed RNA, it is associated with protein sequences in the PANTHER protein family trees through manual curation.", "created": "2019-06-11T14:17:16.858+0000", "modified": "2019-06-11T14:17:16.858+0000", "resources": [{"id": 1218, "mirId": "MIR:00100545", "urlPattern": "http://www.pantherdb.org/pathway/pathCatDetail.do?clsAccession={$id}", "name": "PANTHER Pathway Component at USC (Los Angeles)", "description": "PANTHER Pathway Component at USC (Los Angeles)", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "P00266", "resourceHomeUrl": "http://www.pantherdb.org/", "institution": {"id": 94, "name": "Keck School of Medicine, University of Southern California", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}], "sampleId": "P00266", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1219, "prefix": "gmd.profile", "mirId": "MIR:00000423", "name": "Golm Metabolome Database Profile", "pattern": "^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$", "description": "Golm Metabolome Database (GMD) provides public access to custom mass spectral libraries, metabolite profiling experiments as well as additional information and tools. 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This collection references GC-MS spectra.", "created": "2019-06-11T14:17:17.255+0000", "modified": "2019-06-11T14:17:17.255+0000", "resources": [{"id": 1222, "mirId": "MIR:00100547", "urlPattern": "http://gmd.mpimp-golm.mpg.de/Spectrums/{$id}", "name": "Golm Metabolome Database (GC-MS Spectra) at Max Planck Institute of Molecular Plant Physiology", "description": "Golm Metabolome Database (GC-MS Spectra) at Max Planck Institute of Molecular Plant Physiology", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "53d583d8-40c6-40e1-9296-23f821cd77a5", "resourceHomeUrl": "http://gmd.mpimp-golm.mpg.de/", "institution": {"id": 806, "name": "Max Planck Institute of Molecular Plant Physiology, Potsdam", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "DE", "countryName": "Germany"}}, "location": {"countryCode": "DE", "countryName": "Germany"}, "deprecated": false, "deprecationDate": null}], "sampleId": "53d583d8-40c6-40e1-9296-23f821cd77a5", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1223, "prefix": "gmd.ref", "mirId": "MIR:00000425", "name": "Golm Metabolome Database Reference Substance", "pattern": "^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$", "description": "Golm Metabolome Database (GMD) provides public access to custom mass spectral libraries, metabolite profiling experiments as well as additional information and tools. Since metabolites often cannot be obtained in their respective native biological state, for example organic acids may be only acquirable as salts, the concept of reference substance was introduced. This collection references reference substances.", "created": "2019-06-11T14:17:17.475+0000", "modified": "2019-06-11T14:17:17.475+0000", "resources": [{"id": 1224, "mirId": "MIR:00100548", "urlPattern": "http://gmd.mpimp-golm.mpg.de/ReferenceSubstances/{$id}", "name": "Golm Metabolome Database (Reference Substance) at Max Planck Institute of Molecular Plant Physiology", "description": "Golm Metabolome Database (Reference Substance) at Max Planck Institute of Molecular Plant Physiology", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "8cf84adb-b4db-4807-ac98-0004247c35df", "resourceHomeUrl": "http://gmd.mpimp-golm.mpg.de/", "institution": {"id": 806, "name": "Max Planck Institute of Molecular Plant Physiology, Potsdam", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "DE", "countryName": "Germany"}}, "location": {"countryCode": "DE", "countryName": "Germany"}, "deprecated": false, "deprecationDate": null}], "sampleId": "8cf84adb-b4db-4807-ac98-0004247c35df", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1225, "prefix": "gmd.analyte", "mirId": "MIR:00000426", "name": "Golm Metabolome Database Analyte", "pattern": "^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$", "description": "Golm Metabolome Database (GMD) provides public access to custom mass spectral libraries, metabolite profiling experiments as well as additional information and tools. For GC-MS profiling analyses, polar metabolite extracts are chemically converted, i.e. derivatised into less polar and volatile compounds, so called analytes.  This collection references analytes.", "created": "2019-06-11T14:17:17.661+0000", "modified": "2019-06-11T14:17:17.661+0000", "resources": [{"id": 1226, "mirId": "MIR:00100549", "urlPattern": "http://gmd.mpimp-golm.mpg.de/Analytes/{$id}", "name": "Golm Metabolome Database (Analyte) at Max Planck Institute of Molecular Plant Physiology", "description": "Golm Metabolome Database (Analyte) at Max Planck Institute of Molecular Plant Physiology", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "4f0fa9b6-514f-4ff4-98cc-0009bc08eb80", "resourceHomeUrl": "http://gmd.mpimp-golm.mpg.de/", "institution": {"id": 806, "name": "Max Planck Institute of Molecular Plant Physiology, Potsdam", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "DE", "countryName": "Germany"}}, "location": {"countryCode": "DE", "countryName": "Germany"}, "deprecated": false, "deprecationDate": null}], "sampleId": "4f0fa9b6-514f-4ff4-98cc-0009bc08eb80", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1227, "prefix": "intact.molecule", "mirId": "MIR:00000427", "name": "IntAct Molecule", "pattern": "^EBI\\-[0-9]+$", "description": "IntAct provides a freely available, open source database system and analysis tools for protein interaction data. This collection references interactor molecules.", "created": "2019-06-11T14:17:17.850+0000", "modified": "2019-06-11T14:17:17.850+0000", "resources": [{"id": 1228, "mirId": "MIR:00100550", "urlPattern": "https://www.ebi.ac.uk/intact/molecule/{$id}", "name": "IntAct Molecule at EBI", "description": "IntAct Molecule at EBI", "official": false, "providerCode": "ebi", "sampleId": "EBI-366083", "resourceHomeUrl": "https://www.ebi.ac.uk/intact/", "institution": {"id": 2, "name": "European Bioinformatics Institute", "homeUrl": "https://www.ebi.ac.uk", "description": "At EMBL-EBI, we make the world\u2019s public biological data freely available to the scientific community via a range of services and tools, perform basic research and provide professional training in bioinformatics. \nWe are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states.", "rorId": "https://ror.org/02catss52", "location": {"countryCode": "GB", "countryName": "United Kingdom"}}, "location": {"countryCode": "GB", "countryName": "United Kingdom"}, "deprecated": false, "deprecationDate": null}], "sampleId": "EBI-366083", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1229, "prefix": "depod", "mirId": "MIR:00000428", "name": "DEPOD", "pattern": "^[A-Z0-9]+$", "description": "The human DEPhOsphorylation Database (DEPOD) contains information on known human active phosphatases and their experimentally verified protein and nonprotein substrates. Reliability scores are provided for dephosphorylation interactions, according to the type of assay used, as well as the number of laboratories that have confirmed such interaction. Phosphatase and substrate entries are listed along with the dephosphorylation site, bioassay type, and original literature, and contain links to other resources.", "created": "2019-06-11T14:17:18.034+0000", "modified": "2019-06-11T14:17:18.034+0000", "resources": [{"id": 1231, "mirId": "MIR:00100551", "urlPattern": "http://www.depod.bioss.uni-freiburg.de/showp.php?gene={$id}", "name": "DEPOD at EMBL", "description": "DEPOD at EMBL", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "PTPN1", "resourceHomeUrl": "http://www.depod.bioss.uni-freiburg.de", "institution": {"id": 1230, "name": "European Molecular Biology Laboratory EMBL, Heidelberg", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "DE", "countryName": "Germany"}}, "location": {"countryCode": "DE", "countryName": "Germany"}, "deprecated": false, "deprecationDate": null}], "sampleId": "PTPN1", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1232, "prefix": "cst", "mirId": "MIR:00000429", "name": "Cell Signaling Technology Pathways", "pattern": "^[A-Za-z0-9_-]+$", "description": "Cell Signaling Technology is a commercial organisation which provides a pathway portal to showcase their phospho-antibody products. This collection references pathways.", "created": "2019-06-11T14:17:18.324+0000", "modified": "2019-06-11T14:17:18.324+0000", "resources": [{"id": 1234, "mirId": "MIR:00100552", "urlPattern": "http://www.cellsignal.com/reference/pathway/{$id}.html", "name": "CST Pathways at Cell Signaling Technology", "description": "CST Pathways at Cell Signaling Technology", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "Akt_PKB", "resourceHomeUrl": "http://www.cellsignal.com/pathways/index.html", "institution": {"id": 1233, "name": "Cell Signaling Technology, Inc., Danvers, Massachusetts", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}], "sampleId": "Akt_PKB", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1241, "prefix": "phytozome.locus", "mirId": "MIR:00000432", "name": "Phytozome Locus", "pattern": "^[A-Za-z0-9]+$", "description": "Phytozome is a project to facilitate comparative genomic studies amongst green plants. Famlies of orthologous and paralogous genes that represent the modern descendents of ancestral gene sets are constructed at key phylogenetic nodes. These families allow easy access to clade specific orthology/paralogy relationships as well as clade specific genes and gene expansions. This collection references locus information.", "created": "2019-06-11T14:17:19.049+0000", "modified": "2019-06-11T14:17:19.049+0000", "resources": [{"id": 1243, "mirId": "MIR:00100556", "urlPattern": "http://www.phytozome.net/genePage.php?crown&method=0&search=1&detail=1&searchText=locusname:{$id}", "name": "Phytozome Locus at Joint Genome Institute", "description": "Phytozome Locus at Joint Genome Institute", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "Glyma0021s00410", "resourceHomeUrl": "http://www.phytozome.net/", "institution": {"id": 1242, "name": "Joint Genome Institute, California, and the Center for Integrative Genomics, Lausanne", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}], "sampleId": "Glyma0021s00410", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1244, "prefix": "subtilist", "mirId": "MIR:00000433", "name": "SubtiList", "pattern": "^BG\\d+$", "description": "SubtiList serves to collate and integrate various aspects of the genomic information from B. subtilis, the paradigm of sporulating Gram-positive bacteria.\r\nSubtiList provides a complete dataset of DNA and protein sequences derived from the paradigm strain B. subtilis 168, linked to the relevant annotations and functional assignments.", "created": "2019-06-11T14:17:19.310+0000", "modified": "2019-06-11T14:17:19.310+0000", "resources": [{"id": 1246, "mirId": "MIR:00100557", "urlPattern": "http://genolist.pasteur.fr/SubtiList/genome.cgi?external_query+{$id}", "name": "SubtiList at Pasteur Institute", "description": "SubtiList at Pasteur Institute", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "BG11523", "resourceHomeUrl": "http://genolist.pasteur.fr/SubtiList/", "institution": {"id": 1245, "name": "Pasteur Institute, Paris", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "FR", "countryName": "France"}}, "location": {"countryCode": "FR", "countryName": "France"}, "deprecated": false, "deprecationDate": null}], "sampleId": "BG11523", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1247, "prefix": "dailymed", "mirId": "MIR:00000434", "name": "DailyMed", "pattern": "^[A-Za-z0-9-]+", "description": "DailyMed provides information about marketed drugs. This information includes FDA labels (package inserts). The Web site provides a standard, comprehensive, up-to-date, look-up and download resource of medication content and labeling as found in medication package inserts. Drug labeling is the most recent submitted to the Food and Drug Administration (FDA) and currently in use; it may include, for example, strengthened warnings undergoing FDA review or minor editorial changes. These labels have been reformatted to make them easier to read.", "created": "2019-06-11T14:17:19.532+0000", "modified": "2019-06-11T14:17:19.532+0000", "resources": [{"id": 1249, "mirId": "MIR:00100558", "urlPattern": "https://dailymed.nlm.nih.gov/dailymed/drugInfo.cfm?setid={$id}", "name": "DailyMed at NLM", "description": "DailyMed at NLM", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "973a9333-fec7-46dd-8eb5-25738f06ee54", "resourceHomeUrl": "https://dailymed.nlm.nih.gov/dailymed/", "institution": {"id": 1248, "name": "U.S. National Library of Medicine, Bethesda, Maryland", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}], "sampleId": "973a9333-fec7-46dd-8eb5-25738f06ee54", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1250, "prefix": "sider.drug", "mirId": "MIR:00000435", "name": "SIDER Drug", "pattern": "^\\d+$", "description": "SIDER (Side Effect Resource) is a public, computer-readable side effect resource that connects drugs to side effect terms. It aggregates dispersed public information on side effects. This collection references drugs in SIDER.", "created": "2019-06-11T14:17:19.846+0000", "modified": "2019-06-11T14:17:19.846+0000", "resources": [{"id": 1252, "mirId": "MIR:00100559", "urlPattern": "http://sideeffects.embl.de/drugs/{$id}/", "name": "SIDER Drug v2 at EMBL (Heidelberg)", "description": "SIDER Drug v2 at EMBL (Heidelberg)", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "2244", "resourceHomeUrl": "http://sideeffects.embl.de/", "institution": {"id": 1251, "name": "Structural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "DE", "countryName": "Germany"}}, "location": {"countryCode": "DE", "countryName": "Germany"}, "deprecated": false, "deprecationDate": null}], "sampleId": "2244", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1253, "prefix": "sider.effect", "mirId": "MIR:00000436", "name": "SIDER Side Effect", "pattern": "^C\\d+$", "description": "SIDER (Side Effect Resource) is a public, computer-readable side effect resource that connects drugs to side effect terms. It aggregates dispersed public information on side effects. This collection references side effects of drugs as referenced in SIDER.", "created": "2019-06-11T14:17:20.079+0000", "modified": "2019-06-11T14:17:20.079+0000", "resources": [{"id": 1254, "mirId": "MIR:00100560", "urlPattern": "http://sideeffects.embl.de/se/{$id}/", "name": "SIDER Side Effect v2 at EMBL (Heidelberg)", "description": "SIDER Side Effect v2 at EMBL (Heidelberg)", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "C0017565", "resourceHomeUrl": "http://sideeffects.embl.de/", "institution": {"id": 1251, "name": "Structural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "DE", "countryName": "Germany"}}, "location": {"countryCode": "DE", "countryName": "Germany"}, "deprecated": false, "deprecationDate": null}], "sampleId": "C0017565", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1255, "prefix": "wikigenes", "mirId": "MIR:00000437", "name": "WikiGenes", "pattern": "^\\d+$", "description": "WikiGenes is a collaborative knowledge resource for the life sciences, which is based on the general wiki idea but employs specifically developed technology to serve as a rigorous scientific tool. The rationale behind WikiGenes is to provide a platform for the scientific community to collect, communicate and evaluate knowledge about genes, chemicals, diseases and other biomedical concepts in a bottom-up process.", "created": "2019-06-11T14:17:20.303+0000", "modified": "2019-06-11T14:17:20.303+0000", "resources": [{"id": 1257, "mirId": "MIR:00100567", "urlPattern": "http://www.wikigenes.org/e/gene/e/{$id}.html", "name": "WikiGenes at Massachusetts Institute of Technology", "description": "WikiGenes at Massachusetts Institute of Technology", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "3771877", "resourceHomeUrl": "http://www.wikigenes.org/", "institution": {"id": 1256, "name": "Computer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology, Cambridge, Massachusetts", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}], "sampleId": "3771877", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1258, "prefix": "broad", "mirId": "MIR:00000438", "name": "Broad Fungal Genome Initiative", "pattern": "^S\\d+$", "description": "Magnaporthe grisea, the causal agent of rice blast disease, is one of the most devasting threats to food security worldwide and is a model organism for studying fungal phytopathogenicity and host-parasite interactions. The Magnaporthe comparative genomics database provides accesses to multiple fungal genomes from the Magnaporthaceae family to facilitate the comparative analysis. As part of the Broad Fungal Genome Initiative, the Magnaporthe comparative project includes the finished M. oryzae (formerly M. grisea) genome, as well as the draft assemblies of Gaeumannomyces graminis var. tritici and M. poae.", "created": "2019-06-11T14:17:20.539+0000", "modified": "2019-06-11T14:17:20.539+0000", "resources": [{"id": 1260, "mirId": "MIR:00100569", "urlPattern": "https://www.broadinstitute.org/annotation/genome/magnaporthe_grisea/GeneDetails.html?sp={$id}", "name": "Broad Fungal Genome Initiative at Broad Institute", "description": "Broad Fungal Genome Initiative at Broad Institute", "official": true, "providerCode": "CURATOR_REVIEW", "sampleId": "S7000002168151102", "resourceHomeUrl": "https://www.broadinstitute.org/annotation/genome/magnaporthe_grisea/", "institution": {"id": 1259, "name": "Broad Institute of MIT and Harvard, Cambridge, Massachuchetts", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}], "sampleId": "S7000002168151102", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1261, "prefix": "coriell", "mirId": "MIR:00000439", "name": "Coriell Cell Repositories", "pattern": "^[A-Z]{2}\\d+$", "description": "The Coriell Cell Repositories provide essential research reagents to the scientific community by establishing, verifying, maintaining, and distributing cell cultures and DNA derived from cell cultures. These collections, supported by funds from the National Institutes of Health (NIH) and several foundations, are extensively utilized by research scientists around the world.", "created": "2019-06-11T14:17:20.763+0000", "modified": "2019-06-11T14:17:20.763+0000", "resources": [{"id": 1263, "mirId": "MIR:00100570", "urlPattern": "http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref={$id}", "name": "Coriell Cell Repositories at Coriell Institute", "description": "Coriell Cell Repositories at Coriell Institute", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "GM17027", "resourceHomeUrl": "http://ccr.coriell.org/", "institution": {"id": 1262, "name": "Coriell Institute for Medical Research, New Jersey", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}], "sampleId": "GM17027", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1264, "prefix": "corum", "mirId": "MIR:00000440", "name": "CORUM", "pattern": "^\\d+$", "description": "The CORUM database provides a resource of manually annotated protein complexes from mammalian organisms. Annotation includes protein complex function, localization, subunit composition, literature references and more. All information is obtained from individual experiments published in scientific articles, data from high-throughput experiments is excluded.", "created": "2019-06-11T14:17:20.995+0000", "modified": "2019-06-11T14:17:20.995+0000", "resources": [{"id": 1266, "mirId": "MIR:00100571", "urlPattern": "https://mips.helmholtz-muenchen.de/corum/?id={$id}", "name": "CORUM at Institute for Bioinformatics and Systems Biology (Germany)", "description": "CORUM at Institute for Bioinformatics and Systems Biology (Germany)", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "100", "resourceHomeUrl": "https://mips.helmholtz-muenchen.de/genre/proj/corum/", "institution": {"id": 1265, "name": "Institute for Bioinformatics and Systems Biology, Helmholtz Zentrum M&amp;uuml;nchen-German Research Center for Environmental Health, Neuherberg", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "DE", "countryName": "Germany"}}, "location": {"countryCode": "DE", "countryName": "Germany"}, "deprecated": false, "deprecationDate": null}], "sampleId": "100", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1267, "prefix": "ecoliwiki", "mirId": "MIR:00000442", "name": "EcoliWiki", "pattern": "^[A-Za-z0-9-]+$", "description": "EcoliWiki is a wiki-based resource to store information related to non-pathogenic E. coli, its phages, plasmids, and mobile genetic elements. 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The Center consists of a relational database and web application that support the data storage, annotation, analysis, and information exchange goals of this work. Each data release contains the complete genomic sequences for all viral pathogens and related strains that are available for species in the above-named families. In addition to sequence data, the VBRC provides a curation for each virus species, resulting in a searchable, comprehensive mini-review of gene function relating genotype to biological phenotype, with special emphasis on pathogenesis.", "created": "2019-06-11T14:17:22.962+0000", "modified": "2019-06-11T14:17:22.962+0000", "resources": [{"id": 1288, "mirId": "MIR:00100582", "urlPattern": "http://vbrc.org/gene_detail.asp?gene_id={$id}", "name": "VBRC at University of Alabama", "description": "VBRC at University of Alabama", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "35742", "resourceHomeUrl": "http://vbrc.org/", "institution": {"id": 1287, "name": "University of Alabama, Birmingham and the University of Victoria, British Columbia", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}], "sampleId": "35742", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1289, "prefix": "viralzone", "mirId": "MIR:00000449", "name": "ViralZone", "pattern": "^\\d+$", "description": "ViralZone is a resource bridging textbook knowledge with genomic and proteomic sequences. It provides fact sheets on all known virus families/genera with easy access to sequence data. A selection of reference strains (RefStrain) provides annotated standards to circumvent the exponential increase of virus sequences. Moreover ViralZone offers a complete set of detailed and accurate virion pictures.", "created": "2019-06-11T14:17:23.207+0000", "modified": "2019-06-11T14:17:23.207+0000", "resources": [{"id": 1291, "mirId": "MIR:00100583", "urlPattern": "http://viralzone.expasy.org/all_by_protein/{$id}.html", "name": "ViralZone at SIB", "description": "ViralZone at SIB", "official": false, "providerCode": "sib", "sampleId": "992", "resourceHomeUrl": "http://www.expasy.org/viralzone/", "institution": {"id": 1730, "name": "SIB Swiss Institute of Bioinformatics", "homeUrl": "https://www.sib.swiss", "description": "SIB provides bioinformatics services and resources for scientists and clinicians from academia and industry in Switzerland and worldwide.", "rorId": "https://ror.org/002n09z45", "location": {"countryCode": "CH", "countryName": "Switzerland"}}, "location": {"countryCode": "CH", "countryName": "Switzerland"}, "deprecated": false, "deprecationDate": null}], "sampleId": "992", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1294, "prefix": "rgd.qtl", "mirId": "MIR:00000451", "name": "Rat Genome Database qTL", "pattern": "^\\d+$", "description": "Rat Genome Database seeks to collect, consolidate, and integrate rat genomic and genetic data with curated functional and physiological data and make these data widely available to the scientific community. 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It includes operons for RNA genes.", "created": "2019-06-11T14:17:24.062+0000", "modified": "2019-06-11T14:17:24.062+0000", "resources": [{"id": 1301, "mirId": "MIR:00100588", "urlPattern": "http://csbl.bmb.uga.edu/DOOR/operon.php?id={$id}", "name": "DOOR v1 at University of Georgia", "description": "DOOR v1 at University of Georgia", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "1398574", "resourceHomeUrl": "http://csbl.bmb.uga.edu/DOOR/operon.php", "institution": {"id": 1300, "name": "Computational Systems Biology Laboratory, Department of Biochemistry and Molecular Biology, University of Georgia, Athens, Georgia", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}], "sampleId": "1398574", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1302, "prefix": "degradome", "mirId": "MIR:00000454", "name": "Degradome Database", "pattern": "^[AMCST][0-9x][0-9]$", "description": "The Degradome Database contains information on the complete set of predicted proteases present in a a variety of mammalian species that have been subjected to whole genome sequencing. 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The prediction method identifies sequence-specific DNA-binding transcription factors through homology using profile hidden Markov models (HMMs) of domains from Pfam and SUPERFAMILY. It does not include basal transcription factors or chromatin-associated proteins.", "created": "2019-06-11T14:17:24.514+0000", "modified": "2019-06-11T14:17:24.514+0000", "resources": [{"id": 1306, "mirId": "MIR:00100590", "urlPattern": "http://www.transcriptionfactor.org/index.cgi?Search/Domain+domain:{$id}+cat:DBD", "name": "DBD at MRC Laboratory of Molecular Biology", "description": "DBD at MRC Laboratory of Molecular Biology", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "0045310", "resourceHomeUrl": "http://www.transcriptionfactor.org/", "institution": {"id": 1026, "name": "MRC Laboratory of Molecular Biology, Cambridge", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "GB", "countryName": "United Kingdom"}}, "location": {"countryCode": "GB", "countryName": "United Kingdom"}, "deprecated": false, "deprecationDate": null}], "sampleId": "0045310", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1307, "prefix": "datf", "mirId": "MIR:00000456", "name": "DATF", "pattern": "^AT[1-5]G\\d{5}(\\.\\d+)?$", "description": "DATF contains known and predicted Arabidopsis transcription factors (1827 genes in 56 families) with the unique information of 1177 cloned sequences and many other features including 3D structure templates, EST expression information, transcription factor binding sites and nuclear location signals.", "created": "2019-06-11T14:17:24.701+0000", "modified": "2019-06-11T14:17:24.701+0000", "resources": [{"id": 1309, "mirId": "MIR:00100591", "urlPattern": "http://planttfdb.cbi.pku.edu.cn/tf.php?sp=Ath&did={$id}", "name": "DATF through PlantTFDB", "description": "DATF through PlantTFDB", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "AT1G01030.1", "resourceHomeUrl": "http://datf.cbi.pku.edu.cn/", "institution": {"id": 1612, "name": "Peking University", "homeUrl": "http://english.pku.edu.cn/", "description": "Peking University is a comprehensive and national key university. The campus, known as \"Yan Yuan\"\uff08the garden of Yan\uff09, is situated at Haidian District in the western suburb of Beijing, with a total area of 2,743,532 square metres (or 274 hectares). It stands near to the Yuanmingyuan Garden and the Summer Palace.\nPeking University is proud of its outstanding faculty, including 48 members of the Chinese Academy of Sciences (CAS), 9 members of the Chinese Academy of Engineering (CAE), and 21 members of the Third World Academy of Sciences (TWAS).", "rorId": null, "location": {"countryCode": "CN", "countryName": "China"}}, "location": {"countryCode": "CN", "countryName": "China"}, "deprecated": false, "deprecationDate": null}], "sampleId": "AT1G01030.1", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1310, "prefix": "iuphar.ligand", "mirId": "MIR:00000457", "name": "IUPHAR ligand", "pattern": "^\\d+$", "description": "The IUPHAR Compendium details the molecular, biophysical and pharmacological properties of identified mammalian sodium, calcium and potassium channels, as well as the related cyclic nucleotide-modulated ion channels and the recently described transient receptor potential channels. It includes information on nomenclature systems, and on inter and intra-species molecular structure variation. This collection references ligands.", "created": "2019-06-11T14:17:24.936+0000", "modified": "2019-06-11T14:17:24.936+0000", "resources": [{"id": 1311, "mirId": "MIR:00100592", "urlPattern": "http://www.guidetopharmacology.org/GRAC/LigandDisplayForward?ligandId={$id}", "name": "IUPHAR ligand at University of Edinburgh", "description": "IUPHAR ligand at University of Edinburgh", "official": true, "providerCode": "CURATOR_REVIEW", "sampleId": "1755", "resourceHomeUrl": "http://www.guidetopharmacology.org/GRAC/LigandListForward?database=all", "institution": {"id": 827, "name": "Centre for Cardiovascular Science, University of Edinburgh, Edinburgh", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "GB", "countryName": "United Kingdom"}}, "location": {"countryCode": "GB", "countryName": "United Kingdom"}, "deprecated": false, "deprecationDate": null}], "sampleId": "1755", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1312, "prefix": "molbase", "mirId": "MIR:00000458", "name": "Molbase", "pattern": "^(\\d{1,7}\\-\\d{2}\\-\\d)|([A-Za-z0-9\\+\\-\\_]+)$", "description": "Molbase provides compound data information for researchers as well as listing suppliers and price information. 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The experimental data include large amounts of mass spectrometry results from protein co-purification experiments, yeast two-hybrid interaction experiments, fluorescence microscopy images and protein structure predictions.", "created": "2019-06-11T14:17:25.397+0000", "modified": "2019-06-11T14:17:25.397+0000", "resources": [{"id": 1317, "mirId": "MIR:00100594", "urlPattern": "http://yeastrc.org/pdr/viewProtein.do?id={$id}", "name": "YRC PDR at University of Washington", "description": "YRC PDR at University of Washington", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "2673500", "resourceHomeUrl": "http://www.yeastrc.org/pdr/", "institution": {"id": 1316, "name": "Department of Biochemistry, University of Washington, Seattle", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}], "sampleId": "2673500", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1318, "prefix": "yid", "mirId": "MIR:00000460", "name": "Yeast Intron Database v3", "pattern": "^[A-Z0-9]+$", "description": "The YEast Intron Database (version 3) contains information on the spliceosomal introns of the yeast Saccharomyces cerevisiae. It includes expression data that relates to the efficiency of splicing relative to other processes in strains of yeast lacking nonessential splicing factors.  The data are displayed on each intron page. An updated version of the database is available through [MIR:00000521].", "created": "2019-06-11T14:17:25.610+0000", "modified": "2019-06-11T14:17:25.610+0000", "resources": [{"id": 1320, "mirId": "MIR:00100595", "urlPattern": "http://metarray.ucsc.edu/cgi-bin/intron/yirIntrondb?orfName={$id}", "name": "Yeast Intron Database version 3 at Baskin School of Engineering", "description": "Yeast Intron Database version 3 at Baskin School of Engineering", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "SNR17A", "resourceHomeUrl": "http://compbio.soe.ucsc.edu/yeast_introns.html", "institution": {"id": 1319, "name": "University of California, Santa Cruz", "homeUrl": "https://www.ucsc.edu", "description": "UC Santa Cruz opened in 1965 with 650 students. 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FuncBase provides links to external resources, and may be accessed directly or via links from species-specific databases. This collection references Drosophila data.", "created": "2019-06-11T14:17:25.854+0000", "modified": "2019-06-11T14:17:25.854+0000", "resources": [{"id": 1323, "mirId": "MIR:00100596", "urlPattern": "http://func.mshri.on.ca/fly/genes/list_functional_scores/{$id}", "name": "FuncBase Fly at Harvard Medical School", "description": "FuncBase Fly at Harvard Medical School", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "10194", "resourceHomeUrl": "http://func.mshri.on.ca/fly", "institution": {"id": 1322, "name": "Harvard Medical School, Boston, Massachusetts", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}], "sampleId": "10194", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1324, "prefix": "funcbase.human", "mirId": "MIR:00000462", "name": "FuncBase Human", "pattern": "^\\d+$", "description": "Computational gene function prediction can serve to focus experimental resources on high-priority experimental tasks. FuncBase is a web resource for viewing quantitative machine learning-based gene function annotations. Quantitative annotations of genes, including fungal and mammalian genes, with Gene Ontology terms are accompanied by a community feedback system. Evidence underlying function annotations is shown. FuncBase provides links to external resources, and may be accessed directly or via links from species-specific databases. This collection references human data.", "created": "2019-06-11T14:17:26.074+0000", "modified": "2019-06-11T14:17:26.074+0000", "resources": [{"id": 1325, "mirId": "MIR:00100597", "urlPattern": "http://func.mshri.on.ca/human/genes/list_functional_scores/{$id}", "name": "FuncBase Human at Harvard Medical School", "description": "FuncBase Human at Harvard Medical School", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "119514", "resourceHomeUrl": "http://func.mshri.on.ca/human/", "institution": {"id": 1322, "name": "Harvard Medical School, Boston, Massachusetts", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}], "sampleId": "119514", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1326, "prefix": "funcbase.mouse", "mirId": "MIR:00000463", "name": "FuncBase Mouse", "pattern": "^\\d+$", "description": "Computational gene function prediction can serve to focus experimental resources on high-priority experimental tasks. 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This collection references mouse.", "created": "2019-06-11T14:17:26.285+0000", "modified": "2019-06-11T14:17:26.285+0000", "resources": [{"id": 1327, "mirId": "MIR:00100598", "urlPattern": "http://func.mshri.on.ca/mouse/genes/list_functional_scores/{$id}", "name": "FuncBase Mouse at Harvard Medical School", "description": "FuncBase Mouse at Harvard Medical School", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "1351341", "resourceHomeUrl": "http://func.mshri.on.ca/mouse/", "institution": {"id": 1322, "name": "Harvard Medical School, Boston, Massachusetts", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}], "sampleId": "1351341", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1881, "prefix": "cbioportal", "mirId": "MIR:00000679", "name": "The cBioPortal for Cancer Genomics", "pattern": "^[a-z0-9\\_]+$", "description": "The cBioPortal for Cancer Genomics provides visualization, analysis and download of large-scale cancer genomics data sets.", "created": "2019-06-11T14:18:18.874+0000", "modified": "2019-06-11T14:18:18.874+0000", "resources": [{"id": 1883, "mirId": "MIR:00100909", "urlPattern": "http://www.cbioportal.org/study?id={$id}#summary", "name": "The cBioPortal for Cancer Genomics", "description": "The cBioPortal for Cancer Genomics", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "laml_tcga_pub", "resourceHomeUrl": "http://www.cbioportal.org", "institution": {"id": 1882, "name": "Memorial Sloan Kettering Cancer Center", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}], "sampleId": "laml_tcga_pub", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1328, "prefix": "funcbase.yeast", "mirId": "MIR:00000464", "name": "FuncBase Yeast", "pattern": "^\\d+$", "description": "Computational gene function prediction can serve to focus experimental resources on high-priority experimental tasks. 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This collection references yeast.", "created": "2019-06-11T14:17:26.470+0000", "modified": "2019-06-11T14:17:26.470+0000", "resources": [{"id": 1329, "mirId": "MIR:00100599", "urlPattern": "http://func.mshri.on.ca/yeast/genes/list_functional_scores/{$id}", "name": "FuncBase Yeast at Harvard Medical School", "description": "FuncBase Yeast at Harvard Medical School", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "2701", "resourceHomeUrl": "http://func.mshri.on.ca/yeast", "institution": {"id": 1322, "name": "Harvard Medical School, Boston, Massachusetts", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}], "sampleId": "2701", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1330, "prefix": "ydpm", "mirId": "MIR:00000465", "name": "YDPM", "pattern": "^Y[A-Z]{2}\\d+[CW]$", "description": "The YDPM database serves to support the Yeast Deletion and the Mitochondrial Proteomics Project. The project aims to increase the understanding of mitochondrial function and biogenesis in the context of the cell. In the Deletion Project, strains from the deletion collection were monitored under 9 different media conditions selected for the study of mitochondrial function. The YDPM database contains both the raw data and growth rates calculated for each strain in each media condition.", "created": "2019-06-11T14:17:26.654+0000", "modified": "2019-06-11T14:17:26.654+0000", "resources": [{"id": 1332, "mirId": "MIR:00100600", "urlPattern": "http://www-deletion.stanford.edu/cgi-bin/YDPM/YDPM_search.cgi?thelist={$id}", "name": "YDPM at Stanford University School of Medicine", "description": "YDPM at Stanford University School of Medicine", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "YAL001C", "resourceHomeUrl": "http://www-deletion.stanford.edu/YDPM/", "institution": {"id": 1331, "name": "Stanford University School of Medicine, Stanford, California", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}], "sampleId": "YAL001C", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1333, "prefix": "wb.rnai", "mirId": "MIR:00000466", "name": "WormBase RNAi", "pattern": "^WBRNAi\\d{8}$", "description": "WormBase is an online bioinformatics database of the biology and genome of the model organism Caenorhabditis elegans and related nematodes. It is used by the C. elegans research community both as an information resource and as a mode to publish and distribute their results. 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ICEs are conjugative self-transmissible elements that can integrate into and excise from a host chromosome, and can carry likely virulence determinants, antibiotic-resistant factors and/or genes coding for other beneficial traits. It contains details of ICEs found in representatives bacterial species, and which are organised as families. This collection references ICE elements.", "created": "2019-06-11T14:17:27.338+0000", "modified": "2019-06-11T14:17:27.338+0000", "resources": [{"id": 1340, "mirId": "MIR:00100604", "urlPattern": "http://db-mml.sjtu.edu.cn/ICEberg/feature_page.php?ice_id={$id}", "name": "ICEberg element at Shanghai Jiaotong University", "description": "ICEberg element at Shanghai Jiaotong University", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "100", "resourceHomeUrl": "http://db-mml.sjtu.edu.cn/ICEberg/", "institution": {"id": 1339, "name": "State Key Laboratory of Microbial Metabolism and School of Life Sciences &amp;amp;amp;amp; Biotechnology, Shanghai Jiaotong University, Shanghai", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "CN", "countryName": "China"}}, "location": {"countryCode": "CN", "countryName": "China"}, "deprecated": false, "deprecationDate": null}], "sampleId": "100", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1341, "prefix": "iceberg.family", "mirId": "MIR:00000470", "name": "ICEberg family", "pattern": "^\\d+$", "description": "ICEberg (Integrative and conjugative elements) is a database of integrative and conjugative elements (ICEs) found in bacteria. 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This collection references ICE families.", "created": "2019-06-11T14:17:27.601+0000", "modified": "2019-06-11T14:17:27.601+0000", "resources": [{"id": 1343, "mirId": "MIR:00100605", "urlPattern": "http://db-mml.sjtu.edu.cn/ICEberg/browse_result.php?type=fam&fam_id={$id}", "name": "ICEberg family at Shanghai Jiaotong University", "description": "ICEberg family at Shanghai Jiaotong University", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "1", "resourceHomeUrl": "http://db-mml.sjtu.edu.cn/ICEberg/", "institution": {"id": 1342, "name": "State Key Laboratory of Microbial Metabolism and School of Life Sciences &amp;amp; Biotechnology, Shanghai Jiaotong University, Shanghai", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "CN", "countryName": "China"}}, "location": {"countryCode": "CN", "countryName": "China"}, "deprecated": false, "deprecationDate": null}], "sampleId": "1", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1344, "prefix": "vfdb.genus", "mirId": "MIR:00000471", "name": "VFDB Genus", "pattern": "^\\w+$", "description": "VFDB is a repository of virulence factors (VFs) of pathogenic bacteria.This collection references VF information by Genus.", "created": "2019-06-11T14:17:27.811+0000", "modified": "2019-06-11T14:17:27.811+0000", "resources": [{"id": 1346, "mirId": "MIR:00100606", "urlPattern": "http://www.mgc.ac.cn/cgi-bin/VFs/genus.cgi?Genus={$id}", "name": "VFDB Genus at Institute of Pathogen Biology", "description": "VFDB Genus at Institute of Pathogen Biology", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "Chlamydia", "resourceHomeUrl": "http://www.mgc.ac.cn/VFs/", "institution": {"id": 1345, "name": "State Key Laboratory for Molecular Virology and Genetic Engineering, Institute of Pathogen Biology, Chinese Academy Medical Sciences and Peking Union Medical College, Beijing", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "CN", "countryName": "China"}}, "location": {"countryCode": "CN", "countryName": "China"}, "deprecated": false, "deprecationDate": null}], "sampleId": "Chlamydia", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1347, "prefix": "vfdb.gene", "mirId": "MIR:00000472", "name": "VFDB Gene", "pattern": "^\\w+$", "description": "VFDB is a repository of virulence factors (VFs) of pathogenic bacteria.This collection references VF genes.", "created": "2019-06-11T14:17:28.027+0000", "modified": "2019-06-11T14:17:28.027+0000", "resources": [{"id": 1348, "mirId": "MIR:00100607", "urlPattern": "http://www.mgc.ac.cn/cgi-bin/VFs/gene.cgi?GeneID={$id}", "name": "VFDB Gene at Institute of Pathogen Biology", "description": "VFDB Gene at Institute of Pathogen Biology", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "VFG2154", "resourceHomeUrl": "http://www.mgc.ac.cn/VFs/", "institution": {"id": 1345, "name": "State Key Laboratory for Molecular Virology and Genetic Engineering, Institute of Pathogen Biology, Chinese Academy Medical Sciences and Peking Union Medical College, Beijing", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "CN", "countryName": "China"}}, "location": {"countryCode": "CN", "countryName": "China"}, "deprecated": false, "deprecationDate": null}], "sampleId": "VFG2154", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1349, "prefix": "mesh.2013", "mirId": "MIR:00000473", "name": "MeSH 2013", "pattern": "^[A-Za-z0-9]+$", "description": "MeSH (Medical Subject Headings) is the National Library of Medicine's controlled vocabulary thesaurus. 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This collection references chicken QTLs.", "created": "2019-06-11T14:17:35.752+0000", "modified": "2019-06-11T14:17:35.752+0000", "resources": [{"id": 1432, "mirId": "MIR:00100646", "urlPattern": "https://www.animalgenome.org/QTLdb/q?id=QTL_ID:{$id}", "name": "Animal QTL Chicken at Iowa State University", "description": "Animal QTL Chicken at Iowa State University", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "14362", "resourceHomeUrl": "https://www.animalgenome.org/QTLdb", "institution": {"id": 1429, "name": "Department of Animal Science and Center for Integrated Animal Genomics, Iowa State University, Iowa", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}], "sampleId": "14362", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1433, "prefix": "pigqtldb", "mirId": "MIR:00000506", "name": "Animal Genome Pig QTL", "pattern": "^\\d+$", "description": "The Animal Quantitative Trait Loci (QTL) database (Animal QTLdb) is designed to house publicly all available QTL and single-nucleotide polymorphism/gene association data on livestock animal species. This collection references pig QTLs.", "created": "2019-06-11T14:17:35.969+0000", "modified": "2019-06-11T14:17:35.969+0000", "resources": [{"id": 1434, "mirId": "MIR:00100647", "urlPattern": "https://www.animalgenome.org/QTLdb/q?id=QTL_ID:{$id}", "name": "Animal QTL Pig at Iowa State University", "description": "Animal QTL Pig at Iowa State University", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "14", "resourceHomeUrl": "https://www.animalgenome.org/QTLdb", "institution": {"id": 1429, "name": "Department of Animal Science and Center for Integrated Animal Genomics, Iowa State University, Iowa", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}], "sampleId": "14", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1435, "prefix": "sheepqtldb", "mirId": "MIR:00000507", "name": "Animal Genome Sheep QTL", "pattern": "^\\d+$", "description": "The Animal Quantitative Trait Loci (QTL) database (Animal QTLdb) is designed to house publicly all available QTL and single-nucleotide polymorphism/gene association data on livestock animal species. This collection references sheep QTLs.", "created": "2019-06-11T14:17:36.183+0000", "modified": "2019-06-11T14:17:36.183+0000", "resources": [{"id": 1436, "mirId": "MIR:00100648", "urlPattern": "https://www.animalgenome.org/QTLdb/q?id=QTL_ID:{$id}", "name": "Animal QTL Sheep at Iowa State University", "description": "Animal QTL Sheep at Iowa State University", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "19803", "resourceHomeUrl": "https://www.animalgenome.org/QTLdb", "institution": {"id": 1429, "name": "Department of Animal Science and Center for Integrated Animal Genomics, Iowa State University, Iowa", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}], "sampleId": "19803", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1437, "prefix": "gramene.growthstage", "mirId": "MIR:00000508", "name": "Gramene Growth Stage Ontology", "pattern": "^GRO\\:\\d+$", "description": "Gramene is a comparative genome mapping database for grasses and crop plants. It combines a semi-automatically generated database of cereal genomic and expressed sequence tag sequences, genetic maps, map relations, quantitative trait loci (QTL), and publications, with a curated database of mutants (genes and alleles), molecular markers, and proteins. This collection refers to growth stage ontology information in Gramene.", "created": "2019-06-11T14:17:36.384+0000", "modified": "2019-06-11T14:17:36.384+0000", "resources": [{"id": 1438, "mirId": "MIR:00100649", "urlPattern": "http://www.gramene.org/db/ontology/search?id=GRO:{$id}", "name": "Gramene Growth Stage Ontology at Cold Spring Harbor", "description": "Gramene Growth Stage Ontology at Cold Spring Harbor", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "0007133", "resourceHomeUrl": "http://www.gramene.org/", "institution": {"id": 556, "name": "Cold Spring Harbor Laboratory, New York", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}], "sampleId": "0007133", "namespaceEmbeddedInLui": true, "deprecated": false, "deprecationDate": null}, {"id": 1439, "prefix": "mgnify.samp", "mirId": "MIR:00000510", "name": "MGnify Sample", "pattern": "^[A-Z]+[0-9]+$", "description": "The EBI Metagenomics service is an automated pipeline for the analysis and archiving of metagenomic data that aims to provide insights into the phylogenetic diversity as well as the functional and metabolic potential of a sample. Metagenomics is the study of all genomes present in any given environment without the need for prior individual identification or amplification. This collection references samples.", "created": "2019-06-11T14:17:36.594+0000", "modified": "2019-06-11T14:17:36.594+0000", "resources": [{"id": 1440, "mirId": "MIR:00100656", "urlPattern": "https://www.ebi.ac.uk/metagenomics/samples/{$id}", "name": "MGnify Sample", "description": "MGnify Sample", "official": false, "providerCode": "ebi", "sampleId": "SRS086444", "resourceHomeUrl": "https://www.ebi.ac.uk/metagenomics", "institution": {"id": 2, "name": "European Bioinformatics Institute", "homeUrl": "https://www.ebi.ac.uk", "description": "At EMBL-EBI, we make the world\u2019s public biological data freely available to the scientific community via a range of services and tools, perform basic research and provide professional training in bioinformatics. \nWe are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states.", "rorId": "https://ror.org/02catss52", "location": {"countryCode": "GB", "countryName": "United Kingdom"}}, "location": {"countryCode": "GB", "countryName": "United Kingdom"}, "deprecated": false, "deprecationDate": null}], "sampleId": "SRS086444", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1441, "prefix": "ega.study", "mirId": "MIR:00000511", "name": "European Genome-phenome Archive Study", "pattern": "^EGAS\\d{11}$", "description": "The EGA is a service for permanent archiving and sharing of all types of personally identifiable genetic and phenotypic data resulting from biomedical research projects. The EGA contains exclusive data collected from individuals whose consent agreements authorize data release only for specific research use or to bona fide researchers. Strict protocols govern how information is managed, stored and distributed by the EGA project. This collection references 'Studies' which are experimental investigations of a particular phenomenon, often drawn from different datasets.", "created": "2019-06-11T14:17:36.823+0000", "modified": "2019-06-11T14:17:36.823+0000", "resources": [{"id": 1442, "mirId": "MIR:00100657", "urlPattern": "https://www.ebi.ac.uk/ega/studies/{$id}", "name": "EGA Study at European Bioinformatics Institute", "description": "EGA Study at European Bioinformatics Institute", "official": true, "providerCode": "ebi", "sampleId": "EGAS00000000001", "resourceHomeUrl": "https://www.ebi.ac.uk/ega/studies", "institution": {"id": 2, "name": "European Bioinformatics Institute", "homeUrl": "https://www.ebi.ac.uk", "description": "At EMBL-EBI, we make the world\u2019s public biological data freely available to the scientific community via a range of services and tools, perform basic research and provide professional training in bioinformatics. \nWe are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states.", "rorId": "https://ror.org/02catss52", "location": {"countryCode": "GB", "countryName": "United Kingdom"}}, "location": {"countryCode": "GB", "countryName": "United Kingdom"}, "deprecated": false, "deprecationDate": null}, {"id": 1443, "mirId": "MIR:00100851", "urlPattern": "https://www.omicsdi.org/dataset/ega/{$id}", "name": "EGA Study through OmicsDI", "description": "EGA Study through OmicsDI", "official": false, "providerCode": "omicsdi", "sampleId": "EGAS00000000001", "resourceHomeUrl": "https://www.omicsdi.org/", "institution": {"id": 2, "name": "European Bioinformatics Institute", "homeUrl": "https://www.ebi.ac.uk", "description": "At EMBL-EBI, we make the world\u2019s public biological data freely available to the scientific community via a range of services and tools, perform basic research and provide professional training in bioinformatics. \nWe are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states.", "rorId": "https://ror.org/02catss52", "location": {"countryCode": "GB", "countryName": "United Kingdom"}}, "location": {"countryCode": "GB", "countryName": "United Kingdom"}, "deprecated": false, "deprecationDate": null}], "sampleId": "EGAS00000000001", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1444, "prefix": "ega.dataset", "mirId": "MIR:00000512", "name": "European Genome-phenome Archive Dataset", "pattern": "^EGAD\\d{11}$", "description": "The EGA is a service for permanent archiving and sharing of all types of personally identifiable genetic and phenotypic data resulting from biomedical research projects. The EGA contains exclusive data collected from individuals whose consent agreements authorize data release only for specific research use or to bona fide researchers. Strict protocols govern how information is managed, stored and distributed by the EGA project. This collection references 'Datasets'.", "created": "2019-06-11T14:17:37.233+0000", "modified": "2019-06-11T14:17:37.233+0000", "resources": [{"id": 1445, "mirId": "MIR:00100658", "urlPattern": "https://www.ebi.ac.uk/ega/datasets/{$id}", "name": "EGA Dataset at European Bioinformatics Institute", "description": "EGA Dataset at European Bioinformatics Institute", "official": true, "providerCode": "ebi", "sampleId": "EGAD00000000001", "resourceHomeUrl": "https://www.ebi.ac.uk/ega/dataset", "institution": {"id": 2, "name": "European Bioinformatics Institute", "homeUrl": "https://www.ebi.ac.uk", "description": "At EMBL-EBI, we make the world\u2019s public biological data freely available to the scientific community via a range of services and tools, perform basic research and provide professional training in bioinformatics. \nWe are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states.", "rorId": "https://ror.org/02catss52", "location": {"countryCode": "GB", "countryName": "United Kingdom"}}, "location": {"countryCode": "GB", "countryName": "United Kingdom"}, "deprecated": false, "deprecationDate": null}, {"id": 1446, "mirId": "MIR:00100852", "urlPattern": "https://www.omicsdi.org/dataset/ega/{$id}", "name": "EGA Dataset through OmicsDI", "description": "EGA Dataset through OmicsDI", "official": false, "providerCode": "omicsdi", "sampleId": "EGAD00000000001", "resourceHomeUrl": "https://www.omicsdi.org/", "institution": {"id": 2, "name": "European Bioinformatics Institute", "homeUrl": "https://www.ebi.ac.uk", "description": "At EMBL-EBI, we make the world\u2019s public biological data freely available to the scientific community via a range of services and tools, perform basic research and provide professional training in bioinformatics. \nWe are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states.", "rorId": "https://ror.org/02catss52", "location": {"countryCode": "GB", "countryName": "United Kingdom"}}, "location": {"countryCode": "GB", "countryName": "United Kingdom"}, "deprecated": false, "deprecationDate": null}], "sampleId": "EGAD00000000001", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1453, "prefix": "pride.project", "mirId": "MIR:00000515", "name": "PRIDE Project", "pattern": "^P(X|R)D\\d{6}$", "description": "The PRIDE PRoteomics IDEntifications database is a centralized, standards compliant, public data repository that provides protein and peptide identifications together with supporting evidence. This collection references projects.", "created": "2019-06-11T14:17:38.030+0000", "modified": "2019-06-11T14:17:38.030+0000", "resources": [{"id": 1454, "mirId": "MIR:00100662", "urlPattern": "https://www.ebi.ac.uk/pride/archive/projects/{$id}", "name": "PRIDE Project at EBI", "description": "PRIDE Project at EBI", "official": true, "providerCode": "ebi", "sampleId": "PXD000440", "resourceHomeUrl": "https://www.ebi.ac.uk/pride/", "institution": {"id": 2, "name": "European Bioinformatics Institute", "homeUrl": "https://www.ebi.ac.uk", "description": "At EMBL-EBI, we make the world\u2019s public biological data freely available to the scientific community via a range of services and tools, perform basic research and provide professional training in bioinformatics. \nWe are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states.", "rorId": "https://ror.org/02catss52", "location": {"countryCode": "GB", "countryName": "United Kingdom"}}, "location": {"countryCode": "GB", "countryName": "United Kingdom"}, "deprecated": false, "deprecationDate": null}, {"id": 1455, "mirId": "MIR:00100858", "urlPattern": "https://www.omicsdi.org/dataset/pride/{$id}", "name": "PRIDE Project through OmicsDI", "description": "PRIDE Project through OmicsDI", "official": false, "providerCode": "omicsdi", "sampleId": "PXD000440", "resourceHomeUrl": "https://www.omicsdi.org/", "institution": {"id": 2, "name": "European Bioinformatics Institute", "homeUrl": "https://www.ebi.ac.uk", "description": "At EMBL-EBI, we make the world\u2019s public biological data freely available to the scientific community via a range of services and tools, perform basic research and provide professional training in bioinformatics. \nWe are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states.", "rorId": "https://ror.org/02catss52", "location": {"countryCode": "GB", "countryName": "United Kingdom"}}, "location": {"countryCode": "GB", "countryName": "United Kingdom"}, "deprecated": false, "deprecationDate": null}], "sampleId": "PXD000440", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1456, "prefix": "antibodyregistry", "mirId": "MIR:00000516", "name": "Antibody Registry", "pattern": "^\\d{6}$", "description": "The Antibody Registry provides identifiers for antibodies used in publications. It lists commercial antibodies from numerous vendors, each assigned with a unique identifier. Unlisted antibodies can be submitted by providing the catalog number and vendor information.", "created": "2019-06-11T14:17:38.379+0000", "modified": "2019-06-11T14:17:38.379+0000", "resources": [{"id": 1458, "mirId": "MIR:00100664", "urlPattern": "http://antibodyregistry.org/AB_{$id}", "name": "Antibody Registry at University of California", "description": "Antibody Registry at University of California", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "493771", "resourceHomeUrl": "http://antibodyregistry.org/", "institution": {"id": 1457, "name": "Neuroscience Information Framework, University of California, San Diego,  California", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}], "sampleId": "493771", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1459, "prefix": "mamo", "mirId": "MIR:00000517", "name": "Mathematical Modelling Ontology", "pattern": "^MAMO_\\d{7}$", "description": "The Mathematical Modelling Ontology (MAMO) is a classification of the types of mathematical models used mostly in the life sciences, their variables, relationships and other relevant features.", "created": "2019-06-11T14:17:38.625+0000", "modified": "2019-06-11T14:17:38.625+0000", "resources": [{"id": 1460, "mirId": "MIR:00100665", "urlPattern": "http://bioportal.bioontology.org/ontologies/MAMO/?p=classes&conceptid=http://identifiers.org/mamo/{$id}", "name": "MAMO through BioPortal", "description": "MAMO through BioPortal", "official": false, "providerCode": "bptl", "sampleId": "MAMO_0000026", "resourceHomeUrl": "http://bioportal.bioontology.org/ontologies/MAMO", "institution": {"id": 5, "name": "National Center for Biomedical Ontology, Stanford", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}, {"id": 1461, "mirId": "MIR:00100758", "urlPattern": "https://www.ebi.ac.uk/ols/ontologies/mamo/terms?short_form={$id}", "name": "MaMO through OLS", "description": "MaMO through OLS", "official": false, "providerCode": "ols", "sampleId": "MAMO_0000026", "resourceHomeUrl": "https://www.ebi.ac.uk/ols/ontologies/mamo", "institution": {"id": 2, "name": "European Bioinformatics Institute", "homeUrl": "https://www.ebi.ac.uk", "description": "At EMBL-EBI, we make the world\u2019s public biological data freely available to the scientific community via a range of services and tools, perform basic research and provide professional training in bioinformatics. \nWe are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states.", "rorId": "https://ror.org/02catss52", "location": {"countryCode": "GB", "countryName": "United Kingdom"}}, "location": {"countryCode": "GB", "countryName": "United Kingdom"}, "deprecated": false, "deprecationDate": null}], "sampleId": "MAMO_0000026", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1462, "prefix": "eo", "mirId": "MIR:00000518", "name": "Plant Environment Ontology", "pattern": "^(P)?EO\\:\\d{7}$", "description": "The Plant Environment Ontology is a set of standardized controlled vocabularies to describe various types of treatments given to an individual plant / a population or a cultured tissue and/or cell type sample to evaluate the response on its exposure. It also includes the study types, where the terms can be used to identify the growth study facility. Each growth facility such as field study, growth chamber, green house etc is a environment on its own it may also involve instances of biotic and abiotic environments as supplemental treatments used in these studies.", "created": "2019-06-11T14:17:38.985+0000", "modified": "2019-06-11T14:17:38.985+0000", "resources": [{"id": 1463, "mirId": "MIR:00100667", "urlPattern": "http://archive.gramene.org/db/ontology/search?query=EO:{$id}", "name": "Plant Environment Ontology through Gramene", "description": "Plant Environment Ontology through Gramene", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "0007404", "resourceHomeUrl": "http://archive.gramene.org/db/ontology/search_term?id=EO:0007359", "institution": {"id": 556, "name": "Cold Spring Harbor Laboratory, New York", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}, {"id": 1464, "mirId": "MIR:00100668", "urlPattern": "http://purl.bioontology.org/ontology/PECO/EO:{$id}", "name": "Plant Environment Ontology through BioPortal", "description": "Plant Environment Ontology through BioPortal", "official": false, "providerCode": "bptl", "sampleId": "0007404", "resourceHomeUrl": "http://bioportal.bioontology.org/ontologies/PECO", "institution": {"id": 5, "name": "National Center for Biomedical Ontology, Stanford", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}, {"id": 1465, "mirId": "MIR:00100669", "urlPattern": "https://www.ebi.ac.uk/ols/ontologies/eo/terms?obo_id=EO:{$id}", "name": "Plant Environment Ontology through OLS", "description": "Plant Environment Ontology through OLS", "official": false, "providerCode": "ols", "sampleId": "0007404", "resourceHomeUrl": "https://www.ebi.ac.uk/ols/ontologies/eo", "institution": {"id": 2, "name": "European Bioinformatics Institute", "homeUrl": "https://www.ebi.ac.uk", "description": "At EMBL-EBI, we make the world\u2019s public biological data freely available to the scientific community via a range of services and tools, perform basic research and provide professional training in bioinformatics. \nWe are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states.", "rorId": "https://ror.org/02catss52", "location": {"countryCode": "GB", "countryName": "United Kingdom"}}, "location": {"countryCode": "GB", "countryName": "United Kingdom"}, "deprecated": false, "deprecationDate": null}], "sampleId": "0007404", "namespaceEmbeddedInLui": true, "deprecated": false, "deprecationDate": null}, {"id": 1466, "prefix": "idot", "mirId": "MIR:00000519", "name": "Identifiers.org Terms", "pattern": "^[A-Za-z]+$", "description": "Identifiers.org Terms (idot) is an RDF vocabulary providing useful terms for describing datasets.", "created": "2019-06-11T14:17:39.487+0000", "modified": "2019-06-11T14:17:39.487+0000", "resources": [{"id": 1467, "mirId": "MIR:00100670", "urlPattern": "https://biomodels.net/vocab/idot.rdf#{$id}", "name": "IdoT via biomodels.net", "description": "IdoT via biomodels.net", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "identifierPattern", "resourceHomeUrl": "https://identifiers.org/", "institution": {"id": 2, "name": "European Bioinformatics Institute", "homeUrl": "https://www.ebi.ac.uk", "description": "At EMBL-EBI, we make the world\u2019s public biological data freely available to the scientific community via a range of services and tools, perform basic research and provide professional training in bioinformatics. \nWe are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states.", "rorId": "https://ror.org/02catss52", "location": {"countryCode": "GB", "countryName": "United Kingdom"}}, "location": {"countryCode": "GB", "countryName": "United Kingdom"}, "deprecated": false, "deprecationDate": null}], "sampleId": "identifierPattern", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1470, "prefix": "yeastintron", "mirId": "MIR:00000521", "name": "Yeast Intron Database v4.3", "pattern": "^[A-Z0-9]+$", "description": "The YEast Intron Database (version 4.3) contains information on the spliceosomal introns of the yeast Saccharomyces cerevisiae. It includes expression data that relates to the efficiency of splicing relative to other processes in strains of yeast lacking nonessential splicing factors. The data are displayed on each intron page. This is an updated version of the previous dataset, which can be accessed through [MIR:00000460].", "created": "2019-06-11T14:17:39.906+0000", "modified": "2019-06-11T14:17:39.906+0000", "resources": [{"id": 1471, "mirId": "MIR:00100673", "urlPattern": "http://intron.ucsc.edu/cgi-bin/yeast4.3/intronreports.pl?outputformat=full&amp;orfName={$id}", "name": "Yeast Intron Database version 4.3 at Baskin School of Engineering", "description": "Yeast Intron Database version 4.3 at Baskin School of Engineering", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "SNR17A", "resourceHomeUrl": "http://intron.ucsc.edu/yeast4.3/", "institution": {"id": 1319, "name": "University of California, Santa Cruz", "homeUrl": "https://www.ucsc.edu", "description": "UC Santa Cruz opened in 1965 with 650 students. During the 2018-2019 academic year, 16,983 undergraduate and 1,822 graduate students were enrolled.\n", "rorId": "https://ror.org/03s65by71", "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}], "sampleId": "SNR17A", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1472, "prefix": "ardb", "mirId": "MIR:00000522", "name": "Antibiotic Resistance Genes Database", "pattern": "^[A-Z_]{3}[0-9]{4,}$", "description": "The Antibiotic Resistance Genes Database (ARDB) is a manually curated database which characterises genes involved in antibiotic resistance. Each gene and resistance type is annotated with information, including resistance profile, mechanism of action, ontology, COG and CDD annotations, as well as external links to sequence and protein databases. This collection references resistance genes.", "created": "2019-06-11T14:17:40.104+0000", "modified": "2019-06-11T14:17:40.104+0000", "resources": [{"id": 1474, "mirId": "MIR:00100678", "urlPattern": "http://ardb.cbcb.umd.edu/cgi/search.cgi?db=L&amp;field=ni&amp;term={$id}", "name": "ARDB at University of Maryland", "description": "ARDB at University of Maryland", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "CAE46076", "resourceHomeUrl": "http://ardb.cbcb.umd.edu/", "institution": {"id": 1473, "name": "Center for Bioinformatics and Computational Biology, University of Maryland, Maryland", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}], "sampleId": "CAE46076", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1475, "prefix": "proteomicsdb.protein", "mirId": "MIR:00000524", "name": "ProteomicsDB Protein", "pattern": "^\\d+$", "description": "ProteomicsDB is an effort dedicated to expedite the identification of the human proteome and its use across the scientific community. This human proteome data is assembled primarily using information  from liquid chromatography tandem-mass-spectrometry (LC-MS/MS) experiments involving human tissues, cell lines and body fluids. Information is accessible for individual proteins, or on the basis of protein coverage on the encoding chromosome, and for peptide components of a protein. This collection provides access to individual proteins.", "created": "2019-06-11T14:17:40.344+0000", "modified": "2019-06-11T14:17:40.344+0000", "resources": [{"id": 1477, "mirId": "MIR:00100680", "urlPattern": "https://www.proteomicsdb.org/#human/proteinDetails/{$id}/summary", "name": "Proteomics DB Protein at Center for Integrated Protein Science", "description": "Proteomics DB Protein at Center for Integrated Protein Science", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "53504", "resourceHomeUrl": "https://www.proteomicsdb.org/#human", "institution": {"id": 1476, "name": "Center for Integrated Protein Science, Munich,", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "DE", "countryName": "Germany"}}, "location": {"countryCode": "DE", "countryName": "Germany"}, "deprecated": false, "deprecationDate": null}], "sampleId": "53504", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1478, "prefix": "proteomicsdb.peptide", "mirId": "MIR:00000525", "name": "ProteomicsDB Peptide", "pattern": "^\\d+$", "description": "ProteomicsDB is an effort dedicated to expedite the identification of the human proteome and its use across the scientific community. This human proteome data is assembled primarily using information from liquid chromatography tandem-mass-spectrometry (LC-MS/MS) experiments involving human tissues, cell lines and body fluids. Information is accessible for individual proteins, or on the basis of protein coverage on the encoding chromosome, and for peptide components of a protein. This collection provides access to the peptides identified for a given protein.", "created": "2019-06-11T14:17:40.583+0000", "modified": "2019-06-11T14:17:40.583+0000", "resources": [{"id": 1480, "mirId": "MIR:00100681", "urlPattern": "https://www.proteomicsdb.org/#human/proteinDetails/{$id}/peptides/", "name": "Proteomics DB Peptide at Center for Integrated Protein Science", "description": "Proteomics DB Peptide at Center for Integrated Protein Science", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "53504", "resourceHomeUrl": "https://www.proteomicsdb.org/#peptideSearch", "institution": {"id": 1479, "name": "Center for Integrated Protein Science, Munich", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "DE", "countryName": "Germany"}}, "location": {"countryCode": "DE", "countryName": "Germany"}, "deprecated": false, "deprecationDate": null}], "sampleId": "53504", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1481, "prefix": "hpm.protein", "mirId": "MIR:00000526", "name": "Human Proteome Map Protein", "pattern": "^\\d+$", "description": "The Human Proteome Map (HPM) portal integrates the peptide sequencing result from the draft map of the human proteome project. The project was based on LC-MS/MS by utilizing of high resolution and high accuracy Fourier transform mass spectrometry. The HPM contains direct evidence of translation of a number of protein products derived from human genes, based on peptide identifications of multiple organs/tissues and cell types from individuals with clinically defined healthy tissues. The HPM portal provides data on individual proteins, as well as on individual peptide spectra. This collection references proteins.", "created": "2019-06-11T14:17:40.825+0000", "modified": "2019-06-11T14:17:40.825+0000", "resources": [{"id": 1482, "mirId": "MIR:00100682", "urlPattern": "http://www.humanproteomemap.org/protein.php?hpm_id={$id}", "name": "Human Proteome Map Protein at Institute of Bioinformatics (Bangalore)", "description": "Human Proteome Map Protein at Institute of Bioinformatics (Bangalore)", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "1968", "resourceHomeUrl": "http://www.humanproteomemap.org/index.php", "institution": {"id": 1087, "name": "Institute of Bioinformatics, International Tech Park, Bangalore", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "IN", "countryName": "India"}}, "location": {"countryCode": "IN", "countryName": "India"}, "deprecated": false, "deprecationDate": null}], "sampleId": "1968", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1483, "prefix": "hpm.peptide", "mirId": "MIR:00000527", "name": "Human Proteome Map Peptide", "pattern": "^\\d+$", "description": "The Human Proteome Map (HPM) portal integrates the peptide sequencing result from the draft map of the human proteome project. The project was based on LC-MS/MS by utilizing of high resolution and high accuracy Fourier transform mass spectrometry. The HPM contains direct evidence of translation of a number of protein products derived from human genes, based on peptide identifications of multiple organs/tissues and cell types from individuals with clinically defined healthy tissues. The HPM portal provides data on individual proteins, as well as on individual peptide spectra. This collection references individual peptides through spectra.", "created": "2019-06-11T14:17:41.032+0000", "modified": "2019-06-11T14:17:41.032+0000", "resources": [{"id": 1484, "mirId": "MIR:00100683", "urlPattern": "http://www.humanproteomemap.org/spectrum.php?pep_id={$id}", "name": "Human Proteome Map Peptide at Institute of Bioinformatics (Bangalore)", "description": "Human Proteome Map Peptide at Institute of Bioinformatics (Bangalore)", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "9606117", "resourceHomeUrl": "http://www.humanproteomemap.org/index.php", "institution": {"id": 1087, "name": "Institute of Bioinformatics, International Tech Park, Bangalore", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "IN", "countryName": "India"}}, "location": {"countryCode": "IN", "countryName": "India"}, "deprecated": false, "deprecationDate": null}], "sampleId": "9606117", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1485, "prefix": "drugbankv4.target", "mirId": "MIR:00000528", "name": "DrugBank Target v4", "pattern": "^BE\\d{7}$", "description": "The DrugBank database is a bioinformatics and chemoinformatics resource that combines detailed drug (i.e. chemical, pharmacological and pharmaceutical) data with comprehensive drug target (i.e. sequence, structure, and pathway) information. This collection references target information from version 4 of the database.", "created": "2019-06-11T14:17:41.273+0000", "modified": "2019-06-11T14:17:41.273+0000", "resources": [{"id": 1487, "mirId": "MIR:00100687", "urlPattern": "http://www.drugbank.ca/biodb/bio_entities/{$id}", "name": "DrugBank Target information version 4", "description": "DrugBank Target information version 4", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "BE0000048", "resourceHomeUrl": "http://www.drugbank.ca/targets", "institution": {"id": 1486, "name": "Departments of Computing Science, Biological Sciences, University of Alberta", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "CA", "countryName": "Canada"}}, "location": {"countryCode": "CA", "countryName": "Canada"}, "deprecated": false, "deprecationDate": null}], "sampleId": "BE0000048", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1488, "prefix": "zinc", "mirId": "MIR:00000529", "name": "ZINC", "pattern": "^(ZINC)?\\d+$", "description": "ZINC is a free public resource for ligand discovery. The database contains over twenty million commercially available molecules in biologically relevant representations that may be downloaded in popular ready-to-dock formats and subsets. The Web site enables searches by structure, biological activity, physical property, vendor, catalog number, name, and CAS number.", "created": "2019-06-11T14:17:41.559+0000", "modified": "2019-06-11T14:17:41.559+0000", "resources": [{"id": 1490, "mirId": "MIR:00100688", "urlPattern": "http://zinc15.docking.org/substances/{$id}", "name": "ZINC at University of California (San Francisco)", "description": "ZINC at University of California (San Francisco)", "official": true, "providerCode": "CURATOR_REVIEW", "sampleId": "ZINC1084", "resourceHomeUrl": "http://zinc15.docking.org/", "institution": {"id": 1489, "name": "Shoichet Laboratory, Department of Pharmaceutical Chemistry, University of California, San Francisco", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}], "sampleId": "ZINC1084", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1491, "prefix": "foodb.compound", "mirId": "MIR:00000530", "name": "FooDB Compound", "pattern": "^FDB\\d+$", "description": "FooDB is resource on food and its constituent compounds. It includes data on the compound\u2019s nomenclature, its description, information on its structure, chemical class, its physico-chemical data, its food source(s), its color, its aroma, its taste, its physiological effect, presumptive health effects (from published studies), and concentrations in various foods. This collection references compounds.", "created": "2019-06-11T14:17:41.796+0000", "modified": "2019-06-11T14:17:41.796+0000", "resources": [{"id": 1492, "mirId": "MIR:00100689", "urlPattern": "http://foodb.ca/compounds/{$id}", "name": "FooDB database of food additives at University of Alberta", "description": "FooDB database of food additives at University of Alberta", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "FDB002100", "resourceHomeUrl": "http://foodb.ca/foods", "institution": {"id": 334, "name": "University of Alberta", "homeUrl": "https://www.ualberta.ca", "description": "The University of Alberta in Edmonton is one of Canada's top teaching and research universities, with an international reputation for excellence across the humanities, sciences, creative arts, business, engineering and health sciences.", "rorId": "https://ror.org/0160cpw27", "location": {"countryCode": "CA", "countryName": "Canada"}}, "location": {"countryCode": "CA", "countryName": "Canada"}, "deprecated": false, "deprecationDate": null}], "sampleId": "FDB002100", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1493, "prefix": "unii", "mirId": "MIR:00000531", "name": "UNII", "pattern": "^[A-Z0-9]+$", "description": "The purpose of the joint FDA/USP Substance Registration System (SRS) is to support health information technology initiatives by generating unique ingredient identifiers (UNIIs) for substances in drugs, biologics, foods, and devices. 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It more published genome-scale metabolic networks into a single database with a set of stardized identifiers called BiGG IDs. Genes in the BiGG models are mapped to NCBI genome annotations, and metabolites are linked to many external databases (KEGG, PubChem, and many more). This collection references reactions.", "created": "2019-06-11T14:17:48.059+0000", "modified": "2019-06-11T14:17:48.059+0000", "resources": [{"id": 1558, "mirId": "MIR:00100734", "urlPattern": "http://bigg.ucsd.edu/models/universal/reactions/{$id}", "name": "BiGG Reaction at University of California", "description": "BiGG Reaction at University of California", "official": false, "providerCode": "ucsd", "sampleId": "13GS", "resourceHomeUrl": "http://bigg.ucsd.edu/universal/reactions", "institution": {"id": 190, "name": "University of California, San Diego", "homeUrl": "https://ucsd.edu/", "description": "is a public research university in San Diego, California.\nEstablished in 1960 near the pre-existing Scripps Institution of Oceanography, UC San Diego is the seventh-oldest of the 10 University of California campuses and offers over 200 undergraduate and graduate degree programs, enrolling approximately 30,000 undergraduate and 8,500 graduate students.", "rorId": "https://ror.org/0168r3w48", "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}], "sampleId": "13GS", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1561, "prefix": "umls", "mirId": "MIR:00000559", "name": "UMLS", "pattern": "^C\\d+$", "description": "The Unified Medical Language System is a repository of biomedical vocabularies. 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UMLS concepts are not only inter-related, but may also be linked to external resources such as GenBank.", "created": "2019-06-11T14:17:48.502+0000", "modified": "2019-06-11T14:17:48.502+0000", "resources": [{"id": 1562, "mirId": "MIR:00100736", "urlPattern": "http://linkedlifedata.com/resource/umls/id/{$id}", "name": "Unified Medical Language System at LinkedLifeData", "description": "Unified Medical Language System at LinkedLifeData", "official": true, "providerCode": "CURATOR_REVIEW", "sampleId": "C0021390", "resourceHomeUrl": "http://linkedlifedata.com/", "institution": {"id": 63, "name": "Linkedlifedata, Ontotext, Sofia", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "BG", "countryName": "Bulgaria"}}, "location": {"countryCode": "BG", "countryName": "Bulgaria"}, "deprecated": false, "deprecationDate": null}], "sampleId": "C0021390", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1565, "prefix": "emdb", "mirId": "MIR:00000561", "name": "Electron Microscopy Data Bank", "pattern": "^EMD-\\d{4}$", "description": "The Electron Microscopy Data Bank (EMDB) is a public repository for electron microscopy density maps of macromolecular complexes and subcellular structures. It covers a variety of techniques, including single-particle analysis, electron tomography, and electron (2D) crystallography. The EMDB map distribution format follows the CCP4 definition, which is widely recognized by software packages used by the structural biology community.", "created": "2019-06-11T14:17:48.947+0000", "modified": "2019-06-11T14:17:48.947+0000", "resources": [{"id": 1566, "mirId": "MIR:00100738", "urlPattern": "https://www.ebi.ac.uk/pdbe/entry/emdb/{$id}", "name": "EMDB at Protein Data Bank in Europe", "description": "EMDB at Protein Data Bank in Europe", "official": false, "providerCode": "ebi", "sampleId": "EMD-1001", "resourceHomeUrl": "https://www.ebi.ac.uk/pdbe/emdb/", "institution": {"id": 2, "name": "European Bioinformatics Institute", "homeUrl": "https://www.ebi.ac.uk", "description": "At EMBL-EBI, we make the world\u2019s public biological data freely available to the scientific community via a range of services and tools, perform basic research and provide professional training in bioinformatics. \nWe are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states.", "rorId": "https://ror.org/02catss52", "location": {"countryCode": "GB", "countryName": "United Kingdom"}}, "location": {"countryCode": "GB", "countryName": "United Kingdom"}, "deprecated": false, "deprecationDate": null}], "sampleId": "EMD-1001", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1567, "prefix": "mirtarbase", "mirId": "MIR:00000562", "name": "miRTarBase", "pattern": "^MIRT\\d{6}$", "description": "miRTarBase is a database of miRNA-target interactions (MTIs), collected manually from relevant literature, following Natural Language Processing of the text to identify research articles related to functional studies of miRNAs. Generally, the collected MTIs are validated experimentally by reporter assay, western blot, microarray and next-generation sequencing experiments.", "created": "2019-06-11T14:17:49.171+0000", "modified": "2019-06-11T14:17:49.171+0000", "resources": [{"id": 1569, "mirId": "MIR:00100739", "urlPattern": "http://mirtarbase.mbc.nctu.edu.tw/php/detail.php?mirtid={$id}", "name": "miRTarBase at National Chiao Tung University", "description": "miRTarBase at National Chiao Tung University", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "MIRT000002", "resourceHomeUrl": "http://mirtarbase.mbc.nctu.edu.tw/", "institution": {"id": 1568, "name": "Institute of Bioinformatics and Systems Biology, National Chiao Tung University, Hsinchu", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "TW", "countryName": "Taiwan, Province of China"}}, "location": {"countryCode": "TW", "countryName": "Taiwan, Province of China"}, "deprecated": false, "deprecationDate": null}], "sampleId": "MIRT000002", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1570, "prefix": "meddra", "mirId": "MIR:00000563", "name": "MedDRA", "pattern": "^\\d+$", "description": "The Medical Dictionary for Regulatory Activities (MedDRA) was developed by the International Council for Harmonisation of Technical Requirements for Registration of Pharmaceuticals for Human Use (ICH)to provide a standardised medical terminology to facilitate sharing of regulatory information internationally for medical products used by humans. It is used within regulatory processes, safety monitoring, as well as for marketing activities. Products covered by the scope of MedDRA include pharmaceuticals, biologics, vaccines and drug-device combination products. The MedDRA dictionary is organized by System Organ Class (SOC), divided into High-Level Group Terms (HLGT), High-Level Terms (HLT), Preferred Terms (PT) and finally into Lowest Level Terms (LLT).", "created": "2019-06-11T14:17:49.428+0000", "modified": "2019-06-11T14:17:49.428+0000", "resources": [{"id": 1571, "mirId": "MIR:00100740", "urlPattern": "http://purl.bioontology.org/ontology/MEDDRA/{$id}", "name": "MedDRA through BioPortal", "description": "MedDRA through BioPortal", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "10015919", "resourceHomeUrl": "http://bioportal.bioontology.org/ontologies/MEDDRA", "institution": {"id": 5, "name": "National Center for Biomedical Ontology, Stanford", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}], "sampleId": "10015919", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1572, "prefix": "dashr", "mirId": "MIR:00000564", "name": "DASHR", "pattern": "^(hsa-(let|mir)-\\w+(-\\w+)?)|(piR-\\d+)|(chr\\w+.tRNA\\d+-\\w+)|(chr\\w+.tRNA\\d+-\\w+-tRF\\d)|((SNORD|SNORA|ACA|HBII|HBI|U)(-)?\\w+)|(HY\\d\\+(-L\\d+)?)|((LSU|SSU|5S)(-rRNA_Hsa)?(-L\\d+)?)$", "description": "DASHR reports the annotation, expression and evidence for specific RNA processing (cleavage specificity scores/entropy) of human sncRNA genes, precursor and mature sncRNA products across different human tissues and cell types. DASHR integrates information from multiple existing annotation resources for small non-coding RNAs, including microRNAs (miRNAs), Piwi-interacting (piRNAs), small nuclear (snRNAs), nucleolar (snoRNAs), cytoplasmic (scRNAs), transfer (tRNAs), tRNA fragments (tRFs), and ribosomal RNAs (rRNAs). These datasets were obtained from non-diseased human tissues and cell types and were generated for studying or profiling small non-coding RNAs. This collection references RNA records.", "created": "2019-06-11T14:17:49.634+0000", "modified": "2019-06-11T14:17:49.634+0000", "resources": [{"id": 1574, "mirId": "MIR:00100741", "urlPattern": "http://lisanwanglab.org/DASHR/entry/{$id}", "name": "DASHR at  University of Pennsylvania", "description": "DASHR at  University of Pennsylvania", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "hsa-mir-200a", "resourceHomeUrl": "http://lisanwanglab.org/DASHR/", "institution": {"id": 1573, "name": "Department of Pathology and Laboratory Medicine, University of Pennsylvania, Philadelphia", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}], "sampleId": "hsa-mir-200a", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1575, "prefix": "dashr.expression", "mirId": "MIR:00000565", "name": "DASHR expression", "pattern": "^(hsa-(let|mir)-\\w+(-\\w+)?)|(piR-\\d+)|(chr\\w+.tRNA\\d+-\\w+)|(chr\\w+.tRNA\\d+-\\w+-tRF\\d)|((SNORD|SNORA|ACA|HBII|HBI|U)(-)?\\w+)|(HY\\d\\+(-L\\d+)?)|((LSU|SSU|5S)(-rRNA_Hsa)?(-L\\d+)?)$", "description": "DASHR reports the annotation, expression and evidence for specific RNA processing (cleavage specificity scores/entropy) of human sncRNA genes, precursor and mature sncRNA products across different human tissues and cell types. DASHR integrates information from multiple existing annotation resources for small non-coding RNAs, including microRNAs (miRNAs), Piwi-interacting (piRNAs), small nuclear (snRNAs), nucleolar (snoRNAs), cytoplasmic (scRNAs), transfer (tRNAs), tRNA fragments (tRFs), and ribosomal RNAs (rRNAs). These datasets were obtained from non-diseased human tissues and cell types and were generated for studying or profiling small non-coding RNAs. This collection references RNA expression.", "created": "2019-06-11T14:17:49.866+0000", "modified": "2019-06-11T14:17:49.866+0000", "resources": [{"id": 1576, "mirId": "MIR:00100742", "urlPattern": "https://dashr1.lisanwanglab.org/entry/hsa-mir-200a#{$id}#exprPerTissueTable", "name": "DASHR expression at University of Pennsylvania", "description": "DASHR expression at University of Pennsylvania", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "hsa-mir-200a", "resourceHomeUrl": "https://dashr1.lisanwanglab.org/show-expression-table.php?start=0", "institution": {"id": 1573, "name": "Department of Pathology and Laboratory Medicine, University of Pennsylvania, Philadelphia", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}], "sampleId": "hsa-mir-200a", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1577, "prefix": "splash", "mirId": "MIR:00000566", "name": "SPLASH", "pattern": "^splash\\d[A-Z-a-z0-9]-[A-Za-z0-9]+-[A-Za-z0-9]+$", "description": "The spectra hash code (SPLASH) is a unique and non-proprietary identifier for spectra, and is independent of how the spectra were acquired or processed. It can be easily calculated for a wide range of spectra, including Mass spectroscopy,  infrared spectroscopy, ultraviolet and nuclear magnetic resonance.", "created": "2019-06-11T14:17:50.083+0000", "modified": "2019-06-11T14:17:50.083+0000", "resources": [{"id": 1579, "mirId": "MIR:00100746", "urlPattern": "http://mona.fiehnlab.ucdavis.edu/#/spectra/splash/{$id}", "name": "Mass Bank of North America (MoNA)", "description": "Mass Bank of North America (MoNA)", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "splash10-0zq2000000-77302b0326a418630a84", "resourceHomeUrl": "http://mona.fiehnlab.ucdavis.edu/", "institution": {"id": 1578, "name": "University of Californai, Davis, California", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}], "sampleId": "splash10-0zq2000000-77302b0326a418630a84", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1563, "prefix": "mesh", "mirId": "MIR:00000560", "name": "MeSH", "pattern": "^(C|D)\\d{6,9}$", "description": "MeSH (Medical Subject Headings) is the National Library of Medicine's controlled vocabulary thesaurus. It consists of sets of terms naming descriptors in a hierarchical structure that permits searching at various levels of specificity. This thesaurus is used by NLM for indexing articles from biomedical journals, cataloguing of books, documents, etc.", "created": "2019-06-11T14:17:48.752+0000", "modified": "2020-04-21T17:40:51.334+0000", "resources": [{"id": 1564, "mirId": "MIR:00100737", "urlPattern": "http://id.nlm.nih.gov/mesh/{$id}", "name": "MeSH Linked Data at National Library of Medicine", "description": "MeSH Linked Data at National Library of Medicine", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "C000100", "resourceHomeUrl": "http://id.nlm.nih.gov/mesh/", "institution": {"id": 792, "name": "U.S. National Library of Medicine, National Institute of Health, Maryland", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}], "sampleId": "C000100", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1580, "prefix": "metanetx.chemical", "mirId": "MIR:00000567", "name": "MetaNetX chemical", "pattern": "^(MNXM\\d+|BIOMASS|WATER)$", "description": "MetaNetX/MNXref integrates various information from genome-scale metabolic network reconstructions such as information on reactions, metabolites and compartments. This information undergoes a reconciliation process to minimise for discrepancies between different data sources, and makes the data accessible under a common namespace. This collection references chemical or metabolic components.", "created": "2019-06-11T14:17:50.332+0000", "modified": "2021-02-26T09:36:59.253+0000", "resources": [{"id": 1582, "mirId": "MIR:00100748", "urlPattern": "https://www.metanetx.org/chem_info/{$id}", "name": "MetaNetX chemical at SIB Swiss Institute of Bioinformatics", "description": "MetaNetX chemical at SIB Swiss Institute of Bioinformatics", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "MNXM1723", "resourceHomeUrl": "https://www.metanetx.org/", "institution": {"id": 1581, "name": "Vital-IT group, SIB Swiss Institute of Bioinformatics, Lausanne", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "CH", "countryName": "Switzerland"}}, "location": {"countryCode": "CH", "countryName": "Switzerland"}, "deprecated": false, "deprecationDate": null}], "sampleId": "MNXM1723", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1583, "prefix": "metanetx.reaction", "mirId": "MIR:00000568", "name": "MetaNetX reaction", "pattern": "^(MNXR\\d+|EMPTY)$", "description": "MetaNetX/MNXref integrates various information from genome-scale metabolic network reconstructions such as information on reactions, metabolites and compartments. This information undergoes a reconciliation process to minimise for discrepancies between different data sources, and makes the data accessible under a common namespace. 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It provides a hierarchical representation of metabolic pathways and a controlled vocabulary for pathway annotation in UniProtKB. UniPathway data are cross-linked to existing metabolic resources such as ChEBI/Rhea, KEGG and MetaCyc. This collection references individual reactions.", "created": "2019-06-11T14:17:51.017+0000", "modified": "2019-06-11T14:17:51.017+0000", "resources": [{"id": 1588, "mirId": "MIR:00100752", "urlPattern": "http://www.grenoble.prabi.fr/obiwarehouse/unipathway/ucr?upid={$id}", "name": "UniPathway Reaction at Swiss Institute of Bioinformatics (SIB)", "description": "UniPathway Reaction at Swiss Institute of Bioinformatics (SIB)", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "UCR00226", "resourceHomeUrl": "http://www.grenoble.prabi.fr/obiwarehouse/unipathway", "institution": {"id": 1730, "name": "SIB Swiss Institute of Bioinformatics", "homeUrl": "https://www.sib.swiss", "description": "SIB provides bioinformatics services and resources for scientists and clinicians from academia and industry in Switzerland and worldwide.", "rorId": "https://ror.org/002n09z45", "location": {"countryCode": "CH", "countryName": "Switzerland"}}, "location": {"countryCode": "CH", "countryName": "Switzerland"}, "deprecated": true, "deprecationDate": "2019-10-01T12:11:20.049+0000"}], "sampleId": "UCR00226", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1589, "prefix": "hp", "mirId": "MIR:00000571", "name": "Human Phenotype Ontology", "pattern": "^HP:\\d{7}$", "description": "The Human Phenotype Ontology (HPO) aims to provide a standardized vocabulary of phenotypic abnormalities encountered in human disease. Each term in the HPO describes a phenotypic abnormality, such as atrial septal defect. The HPO is currently being developed using the medical literature, Orphanet, DECIPHER, and OMIM.", "created": "2019-06-11T14:17:51.237+0000", "modified": "2019-06-11T14:17:51.237+0000", "resources": [{"id": 1592, "mirId": "MIR:00100754", "urlPattern": "https://www.ebi.ac.uk/ols/ontologies/hp/terms?obo_id=HP:{$id}", "name": "Human Phenotype Ontology through OLS", "description": "Human Phenotype Ontology through OLS", "official": false, "providerCode": "ols", "sampleId": "0000118", "resourceHomeUrl": "https://www.ebi.ac.uk/ols/ontologies/hp", "institution": {"id": 2, "name": "European Bioinformatics Institute", "homeUrl": "https://www.ebi.ac.uk", "description": "At EMBL-EBI, we make the world\u2019s public biological data freely available to the scientific community via a range of services and tools, perform basic research and provide professional training in bioinformatics. \nWe are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states.", "rorId": "https://ror.org/02catss52", "location": {"countryCode": "GB", "countryName": "United Kingdom"}}, "location": {"countryCode": "GB", "countryName": "United Kingdom"}, "deprecated": false, "deprecationDate": null}, {"id": 1591, "mirId": "MIR:00100753", "urlPattern": "https://hpo.jax.org/app/browse/term/HP:{$id}", "name": "Human Phenotype Ontology at Institute for Medical Genetics and Human Genetics", "description": "Human Phenotype Ontology at Institute for Medical Genetics and Human Genetics", "official": true, "providerCode": "CURATOR_REVIEW", "sampleId": "0000118", "resourceHomeUrl": "http://human-phenotype-ontology.github.io/", "institution": {"id": 1590, "name": "Institute for Medical Genetics and Human Genetics, Charit\u00e9-Universit\u00e4tsmedizin, Berlin", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "DE", "countryName": "Germany"}}, "location": {"countryCode": "DE", "countryName": "Germany"}, "deprecated": false, "deprecationDate": null}], "sampleId": "0000118", "namespaceEmbeddedInLui": true, "deprecated": false, "deprecationDate": null}, {"id": 1593, "prefix": "sasbdb", "mirId": "MIR:00000572", "name": "SASBDB", "pattern": "^[Ss][Aa][Ss][A-Za-z0-9]{3}[0-9]$", "description": "Small Angle Scattering Biological Data Bank (SASBDB) is a curated repository for small angle X-ray scattering (SAXS) and neutron scattering (SANS) data and derived models. 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SASBDB provides freely accessible and downloadable experimental data, which are deposited together with the relevant experimental conditions, sample details, derived models and their fits to the data.", "created": "2019-06-11T14:17:51.650+0000", "modified": "2019-06-11T14:17:51.650+0000", "resources": [{"id": 1595, "mirId": "MIR:00100763", "urlPattern": "http://www.sasbdb.org/data/{$id}", "name": "SASBDB at European Molecular Biology Laboratory", "description": "SASBDB at European Molecular Biology Laboratory", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "SASDAX8", "resourceHomeUrl": "http://www.sasbdb.org/", "institution": {"id": 1594, "name": "European Molecular Biology Lab Hamburg Outstation", "homeUrl": "https://www.embl-hamburg.de", "description": "EMBL is an intergovernmental organisation specialising in basic research in the life sciences, funded by public research monies from more than 20 member states, including much of Europe and Israel, and two associate members, Argentina and Australia. 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Terms from multiple sources are aggregated into concepts, each of which is assigned a unique identifier and a preferred name and symbol. 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\nWe are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states.", "rorId": "https://ror.org/02catss52", "location": {"countryCode": "GB", "countryName": "United Kingdom"}}, "location": {"countryCode": "GB", "countryName": "United Kingdom"}, "deprecated": false, "deprecationDate": null}], "sampleId": "00100037", "namespaceEmbeddedInLui": true, "deprecated": false, "deprecationDate": null}, {"id": 1669, "prefix": "cosmic", "mirId": "MIR:00000601", "name": "COSMIC Gene", "pattern": "^[A-Z0-9]+$", "description": "COSMIC is a comprehensive global resource for information on somatic mutations in human cancer, combining curation of the scientific literature with tumor resequencing data from the Cancer Genome Project at the Sanger Institute, U.K. This collection references genes.", "created": "2019-06-11T14:17:59.699+0000", "modified": 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InterLex allows for the association of data fields and data values to common data elements and terminologies enabling the crowdsourcing of data-terminology mappings within and across communities. InterLex provides a stable layer on top of the many other existing terminologies, lexicons, ontologies, and common data element collections and provides a set of inter-lexical and inter-data-lexical mappings. ", "created": "2021-05-22T16:59:04.850+0000", "modified": "2021-05-22T16:59:04.850+0000", "resources": [{"id": 2648, "mirId": "MIR:00000813", "urlPattern": "https://scicrunch.org/scicrunch/interlex/view/ilx_{$id}", "name": "FAIR Data Informatics Laboratory", "description": "The FAIR Data Informatics Lab at UCSD is a leader in developing and providing novel informatics infrastructure and tools for making data FAIR: Findable, Accessible, Interoperable and Reusable. 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To accomplish its mission, the group leverages its interdisciplinary expertise in Machine Intelligence, Complex Systems and Computational Biology and pursues collaborative activities with relevant stakeholders.", "rorId": null, "location": {"countryCode": "GB", "countryName": "United Kingdom"}}, "location": {"countryCode": "GB", "countryName": "United Kingdom"}, "deprecated": false, "deprecationDate": null}], "sampleId": "82", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 2709, "prefix": "mlc", "mirId": "MIR:00000828", "name": "MLCommons Association", "pattern": "^[0-9a-zA-Z\\.\\-\\_]+$", "description": "MLCommons Association artifacts, including benchmark results, datasets, and saved models.", "created": "2021-06-24T16:02:06.844+0000", "modified": "2021-06-24T16:02:06.844+0000", "resources": [{"id": 2710, "mirId": "MIR:00000823", "urlPattern": "https://www.mlcommons.org/mlc-id/{$id}", "name": "MLCommons Association", "description": "The MLCommons Association is a non-profit founded to \"make ML better for everyone\" through benchmarks, public datasets, and best practices. 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The clinical Evidence Item is a piece of information that has been manually curated from trustable medical literature about a Variant or genomic \u2018event\u2019 that has implications in cancer Predisposition, Diagnosis (aka molecular classification), Prognosis, Predictive response to therapy, Oncogenicity or protein Function. For example, an Evidence Item might describe a line of evidence supporting the notion that tumors with a somatic BRAF V600 mutation generally respond well to the drug dabrafenib. A Variant may be a single nucleotide substitution, a small insertion or deletion, an RNA gene fusion, a chromosomal rearrangement, an RNA expression pattern (e.g. over-expression), etc. Each clinical Evidence statement corresponds to a single citable Source (a publication or conference abstract).", "created": "2021-08-08T09:28:56.816+0000", "modified": "2021-08-08T09:28:56.816+0000", "resources": [{"id": 2785, "mirId": "MIR:00000838", "urlPattern": "https://civicdb.org/links/evidence/{$id}", "name": "Clinical Interpretation of Variants in Cancer (CIViC)", "description": "CIViC is an open access, open source, community-driven web resource for Clinical Interpretation of Variants in Cancer.", "official": true, "providerCode": "civicdb", "sampleId": "1199", "resourceHomeUrl": "https://civicdb.org/", "institution": {"id": 2750, "name": "Washington University in St. Louis", "homeUrl": "https://wustl.edu/", "description": "Organization information obtained from ROR API using ROR ID 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New workflows and results of analyses can be shared with the HEAL community to enable collaborative, high-impact publications that address the opioid crisis.", "official": true, "providerCode": "dg.h34L", "sampleId": "022911d6-af91-4b02-8f96-9107c77c98b8", "resourceHomeUrl": "https://healdata.org/", "institution": {"id": 2820, "name": "Open Commons Consortium", "homeUrl": "https://www.occ-data.org/", "description": "The Open Commons Consortium (OCC) manages and operates cloud computing, data commons, and data ecosystems to advance scientific, medical, health care and environmental research for human and societal impact.", "rorId": null, "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}], "sampleId": "022911d6-af91-4b02-8f96-9107c77c98b8", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 3189, "prefix": "dg.h35l", "mirId": "MIR:00000944", "name": "HEAL Data Platform", "pattern": "[0-9a-fA-F]{8}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{12}", "description": "This website supports the management, analysis and sharing of data for the research community and aims to accelerate discovery and development of therapies, diagnostic tests, and other technologies.", "created": "2022-02-27T20:40:41.328+0000", "modified": "2022-02-27T20:40:41.328+0000", "resources": [{"id": 3190, "mirId": "MIR:00000943", "urlPattern": "https://externaldata.healdata.org/ga4gh/drs/v1/objects/{$id}", "name": "HEAL Data Platform", "description": "This website supports the management, analysis and sharing of data for the research community and aims to accelerate discovery and development of therapies, diagnostic tests, and other technologies.", "official": true, "providerCode": "dg.h34L", "sampleId": "007e4996-c902-49a0-8fe8-b363f1d3fb23", "resourceHomeUrl": "https://externaldata.healdata.org/", "institution": {"id": 2820, "name": "Open Commons Consortium", "homeUrl": "https://www.occ-data.org/", "description": "The Open Commons Consortium (OCC) manages and operates cloud computing, data commons, and data ecosystems to advance scientific, medical, health care and environmental research for human and societal impact.", "rorId": null, "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}], "sampleId": "007e4996-c902-49a0-8fe8-b363f1d3fb23", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 3193, "prefix": "dg.um33r90", "mirId": "MIR:00000946", "name": "UMCCR AGHA Data Commons", "pattern": "[0-9a-fA-F]{8}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{12}", "description": "The UMCCR AGHA Data Commons supports the management, analysis and sharing of data for the research community.", "created": "2022-02-27T20:40:56.446+0000", "modified": "2022-02-27T20:40:56.446+0000", "resources": [{"id": 3194, "mirId": "MIR:00000945", "urlPattern": "https://gen3.agha.umccr.org/ga4gh/drs/v1/objects/{$id}", "name": "UMCCR AGHA Data Commons", "description": "The UMCCR AGHA Data Commons supports the management, analysis and sharing of data for the research community.", "official": true, "providerCode": "dg.UM33R90", "sampleId": "0aa770b4-66b3-4009-9f02-852236b0544f", "resourceHomeUrl": "https://gen3.agha.umccr.org/", "institution": {"id": 3192, "name": " Open Commons Consortium ", "homeUrl": "https://www.occ-data.org/", "description": "The Open Commons Consortium (OCC) manages and operates cloud computing, data commons, and data ecosystems to advance scientific, medical, health care and environmental research for human and societal impact.", "rorId": null, "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}], "sampleId": "0aa770b4-66b3-4009-9f02-852236b0544f", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 3203, "prefix": "ps", "mirId": "MIR:00000951", "name": "Pennsieve", "pattern": "N:package:[a-z0-9]{8}-[a-z0-9]{4}-[a-z0-9]{4}-[a-z0-9]{4}-[a-z0-9]{12}", "description": "Pennsieve is a publicly accessible Scientific Data Management and publication platform. The platform supports data curation, sharing and publishing complex scientific datasets with a focus on integration between graph-based metadata and file-archival. The platform provides a \"peer\"-reviewed publication mechanism and public datasets are available through its Discover Web Application and APIs. ", "created": "2022-03-15T08:27:12.699+0000", "modified": "2022-03-15T08:27:12.699+0000", "resources": [{"id": 3204, "mirId": "MIR:00000950", "urlPattern": "https://discover.pennsieve.io/package/{$id}", "name": "Pennsieve Discover", "description": "Pennsieve Discover is a public repository for scientific datasets and specializes in FAIR distribution of public datasets that combine large files and graph based metadata records. ", "official": true, "providerCode": "ps", "sampleId": "N:package:e3243db3-7986-488e-9a10-c7a0bfdcfe8a", "resourceHomeUrl": "https://discover.pennsieve.io", "institution": {"id": 1674, "name": "University of Pennsylvania", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}], "sampleId": "N:package:e3243db3-7986-488e-9a10-c7a0bfdcfe8a", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 2638, "prefix": "icdc", "mirId": "MIR:00000812", "name": "Integrated Canine Data Commons", "pattern": "^\\d{6}$", "description": "The Integrated Canine Data Commons is one of several repositories within the NCI Cancer Research Data Commons (CRDC), a cloud-based data science infrastructure that provides secure access to a large, comprehensive, and expanding collection of cancer research data. The ICDC was established to further research on human cancers by enabling comparative analysis with canine cancer.", "created": "2021-05-10T19:40:34.200+0000", "modified": "2022-03-31T16:55:06.915+0000", "resources": [{"id": 2639, "mirId": "MIR:00000811", "urlPattern": "https://caninecommons.cancer.gov/#/study/{$id}", "name": "Integrated Canine Data Commons", "description": "Integrated Canine Data Commons at National Cancer Institute (USA)", "official": true, "providerCode": "icdc", "sampleId": "000009", "resourceHomeUrl": "https://caninecommons.cancer.gov/#/", "institution": {"id": 2637, "name": "National Cancer Institute", "homeUrl": "https://www.cancer.gov/", "description": "Organization information obtained from ROR API using ROR ID 'https://ror.org/040gcmg81' with Wikidata IDs [Q664846], and ISNI IDs [0000 0004 1936 8075]", "rorId": "https://ror.org/040gcmg81", "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}], "sampleId": "000009", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 361, "prefix": "pdb-ccd", "mirId": "MIR:00000113", "name": "Chemical Component Dictionary", "pattern": "^\\w{1,3}$", "description": "The Chemical Component Dictionary is as an external reference file describing all residue and small molecule components found in Protein Data Bank entries. It contains detailed chemical descriptions for standard and modified amino acids/nucleotides, small molecule ligands, and solvent molecules. Each chemical definition includes descriptions of chemical properties such as stereochemical assignments, aromatic bond assignments, idealized coordinates, chemical descriptors (SMILES & InChI), and systematic chemical names.", "created": "2019-06-11T14:16:03.054+0000", "modified": "2022-05-18T15:48:21.884+0000", "resources": [{"id": 362, "mirId": "MIR:00100146", "urlPattern": "https://www.ebi.ac.uk/pdbe-srv/pdbechem/chemicalCompound/show/{$id}", "name": "Protein Data Bank Chemical Component Dictionary at EBI", "description": "Protein Data Bank Chemical Component Dictionary at EBI", "official": false, "providerCode": "ebi", "sampleId": "AB0", "resourceHomeUrl": "https://www.ebi.ac.uk/pdbe-srv/pdbechem/", "institution": {"id": 2, "name": "European Bioinformatics Institute", "homeUrl": "https://www.ebi.ac.uk", "description": "At EMBL-EBI, we make the world\u2019s public biological data freely available to the scientific community via a range of services and tools, perform basic research and provide professional training in bioinformatics. \nWe are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states.", "rorId": "https://ror.org/02catss52", "location": {"countryCode": "GB", "countryName": "United Kingdom"}}, "location": {"countryCode": "GB", "countryName": "United Kingdom"}, "deprecated": false, "deprecationDate": null}], "sampleId": "AB0", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 3252, "prefix": "civic.sid", "mirId": "MIR:00000953", "name": "CIViC Source", "pattern": "^[0-9]+$", "description": "In CIViC, each Evidence Item must be associated with a Source Type and Source ID, which link the Evidence Item to the original source of information supporting clinical claims. Currently, CIViC accepts publications indexed on PubMed OR abstracts published through the American Society of Clinical Oncology (ASCO). Each such source entered into CIViC is assigned a unique identifier and expert curators can curate guidance that assists future curators in the interpretation of information from this source.", "created": "2022-08-08T18:32:17.171+0000", "modified": "2022-08-08T18:32:17.171+0000", "resources": [{"id": 3253, "mirId": "MIR:00000952", "urlPattern": "https://civicdb.org/links/sources/{$id}", "name": "Clinical Interpretation of Variants in Cancer (CIViC)", "description": "CIViC is an open access, open source, community-driven web resource for Clinical Interpretation of Variants in Cancer.", "official": true, "providerCode": "civicdb", "sampleId": "62", "resourceHomeUrl": "https://civicdb.org/", "institution": {"id": 2750, "name": "Washington University in St. Louis", "homeUrl": "https://wustl.edu/", "description": "Organization information obtained from ROR API using ROR ID 'https://ror.org/01yc7t268' with Wikidata IDs [Q777403], and ISNI IDs [0000 0001 2355 7002]", "rorId": null, "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}], "sampleId": "62", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 3255, "prefix": "civic.tid", "mirId": "MIR:00000955", "name": "CIViC Therapy", "pattern": "^[0-9]+$", "description": "Therapies (often drugs) in CIViC are associated with Predictive Evidence Types, which describe sensitivity, resistance or adverse response to therapies when a given variant is present. The Therapy field may also be used to describe more general treatment types and regimes, such as FOLFOX or Radiation, as long as the literature derived Evidence Item makes a scientific association between the Therapy (treatment type) and the presence of the variant.", "created": "2022-08-08T18:33:25.710+0000", "modified": "2022-08-08T18:33:25.710+0000", "resources": [{"id": 3256, "mirId": "MIR:00000954", "urlPattern": "https://civicdb.org/links/drugs/{$id}", "name": "Clinical Interpretation of Variants in Cancer (CIViC)", "description": "CIViC is an open access, open source, community-driven web resource for Clinical Interpretation of Variants in Cancer.", "official": true, "providerCode": "civicdb", "sampleId": "14", "resourceHomeUrl": "https://civicdb.org/", "institution": {"id": 2750, "name": "Washington University in St. Louis", "homeUrl": "https://wustl.edu/", "description": "Organization information obtained from ROR API using ROR ID 'https://ror.org/01yc7t268' with Wikidata IDs [Q777403], and ISNI IDs [0000 0001 2355 7002]", "rorId": null, "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}], "sampleId": "14", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 3258, "prefix": "civic.did", "mirId": "MIR:00000957", "name": "CIViC Disease", "pattern": "^[0-9]+$", "description": "Within the CIViC database, the disease should be the cancer or cancer subtype that is a result of the described variant. The disease selected should be as specific as possible should reflect the disease type used in the source that supports the evidence statement.", "created": "2022-08-08T18:34:15.882+0000", "modified": "2022-08-08T18:34:15.882+0000", "resources": [{"id": 3259, "mirId": "MIR:00000956", "urlPattern": "https://civicdb.org/links/diseases/{$id}", "name": "Clinical Interpretation of Variants in Cancer (CIViC)", "description": "CIViC is an open access, open source, community-driven web resource for Clinical Interpretation of Variants in Cancer.https://civicdb.org/\n", "official": true, "providerCode": "civicdb", "sampleId": "46", "resourceHomeUrl": "https://civicdb.org/", "institution": {"id": 2750, "name": "Washington University in St. Louis", "homeUrl": "https://wustl.edu/", "description": "Organization information obtained from ROR API using ROR ID 'https://ror.org/01yc7t268' with Wikidata IDs [Q777403], and ISNI IDs [0000 0001 2355 7002]", "rorId": null, "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}], "sampleId": "46", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 3263, "prefix": "metatlas", "mirId": "MIR:00000959", "name": "Metabolic Atlas", "pattern": "^MA[MR]\\d{5}[a-z]?$", "description": "Metabolic Atlas facilitates metabolic modelling by presenting open source genome-scale metabolic models for easy browsing and analysis.", "created": "2022-08-08T18:36:40.981+0000", "modified": "2022-08-08T18:36:40.981+0000", "resources": [{"id": 3264, "mirId": "MIR:00000958", "urlPattern": "https://metabolicatlas.org/identifier/MetabolicAtlas/{$id}", "name": "Metabolic Atlas", "description": "Metabolic Atlas is a web platform integrating open-source genome scale metabolic models (GEMs) for easy browsing and analysis. The goal is to collect curated GEMs, and to bring these models closer to FAIR principles. The website provides visualisations and comparisons of the GEMs, and links to resources, algorithms, other databases, and more general software applications.", "official": true, "providerCode": "metatlas", "sampleId": "MAR01234", "resourceHomeUrl": "https://metabolicatlas.org", "institution": {"id": 3262, "name": "National Bioinformatics Infrastructure Sweden", "homeUrl": "https://nbis.se", "description": "NBIS (National Bioinformatics Infrastructure Sweden) is a distributed national research infrastructure supported by the Swedish Research Council (Vetenskapsr\u00e5det), Science for Life Laboratory, all major Swedish universities and the Knut and Alice Wallenberg Foundation, providing state-of-the-art bioinformatics to the Swedish life science researchers community. NBIS is also the Swedish contact point to the European infrastructure for biological information ELIXIR.\n\nPresent NBIS staff has expertise in protein bioinformatics, mass spectrometry (MS), next generation sequencing (NGS), large-scale data handling and integration, metagenomics, systems biology, biostatistics and RNAseq.\n\nNBIS is predominantly offering bioinformatics support in various projects, depending on the user needs. In the projects, the NBIS persons are working close to the research group, and they spend part of their time to teach the users in order to propagate the bioinformatics knowledge. Furthermore, NBIS provides infrastructure and tools for bioinformatics analyses in order to facilitate these analyses for the users.\n\nNBIS forms the bioinformatics platform at the Science for Life Laboratory.", "rorId": null, "location": {"countryCode": "SE", "countryName": "Sweden"}}, "location": {"countryCode": "SE", "countryName": "Sweden"}, "deprecated": false, "deprecationDate": null}], "sampleId": "MAR01234", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 3271, "prefix": "ror", "mirId": "MIR:00000961", "name": "ROR", "pattern": "^0[a-hj-km-np-tv-z|0-9]{6}[0-9]{2}$", "description": "ROR (Research Organization Registry) is a global, community-led registry\nof open persistent identifiers for research organizations. ROR is jointly\noperated by California Digital Library, Crossref, and Datacite.", "created": "2022-08-15T19:28:35.707+0000", "modified": "2022-08-18T13:14:34.725+0000", "resources": [{"id": 3272, "mirId": "MIR:00001056", "urlPattern": "https://ror.org/{$id}", "name": "ROR", "description": "ROR (Research Organization Registry) is a global, community-led registry of open persistent identifiers for research organizations. ", "official": true, "providerCode": "ror", "sampleId": "03yrm5c26", "resourceHomeUrl": "https://ror.org", "institution": {"id": 3270, "name": "California Digital Library", "homeUrl": "https://www.cdlib.org/", "description": "Organization information obtained from ROR API using ROR ID 'https://ror.org/03yrm5c26' with Wikidata IDs [Q5020447], and ISNI IDs [0000 0001 1957 5136]", "rorId": null, "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}], "sampleId": "03yrm5c26", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 3292, "prefix": "clb", "mirId": "MIR:00000964", "name": "ChecklistBank", "pattern": "^[0-9]+(LR)?$", "description": "ChecklistBank is an index and repository for taxonomic and nomenclatural datasets", "created": "2022-11-03T14:17:05.019+0000", "modified": "2022-11-03T14:17:05.019+0000", "resources": [{"id": 3293, "mirId": "MIR:00000963", "urlPattern": "https://www.checklistbank.org/dataset/{$id}", "name": "ChecklistBank", "description": "ChecklistBank at GBIF. Codeveloped with the Catalogue of Life", "official": true, "providerCode": "clb", "sampleId": "1010", "resourceHomeUrl": "https://www.checklistbank.org", "institution": {"id": 3291, "name": "Global Biodiversity Information Facility", "homeUrl": "https://www.gbif.org/", "description": "Organization information obtained from ROR API using ROR ID 'https://ror.org/05fjyn938' with Wikidata IDs [Q1531570], and no ISNI information", "rorId": null, "location": {"countryCode": "DK", "countryName": "Denmark"}}, "location": {"countryCode": "DK", "countryName": "Denmark"}, "deprecated": false, "deprecationDate": null}], "sampleId": "1010", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 3298, "prefix": "drugcentral", "mirId": "MIR:00000966", "name": "DrugCentral", "pattern": "^[0-9]+$", "description": "DrugCentral (http://drugcentral.org) is an open-access online drug compendium. DrugCentral integrates structure, bioactivity, regulatory, pharmacologic actions and indications for active pharmaceutical ingredients approved by FDA and other regulatory agencies. Monitoring of regulatory agencies for new drugs approvals ensures the resource is up-to-date. DrugCentral integrates content for active ingredients with pharmaceutical formulations, indexing drugs and drug label annotations, complementing similar resources available online. Its complementarity with other online resources is facilitated by cross referencing to external resources. At the molecular level, DrugCentral bridges drug-target interactions with pharmacological action and indications. The integration with FDA drug labels enables text mining applications for drug adverse events and clinical trial information. Chemical structure overlap between DrugCentral and five online drug resources, and the overlap between DrugCentral FDA-approved drugs and their presence in four different chemical collections, are discussed. 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It includes reference samples, such as cell lines, which are repeatedly used in experiments. Accession numbers for the reference samples will be exchanged with a similar database at NCBI, and DDBJ (Japan). Record access may be affected due to different release cycles and inter-institutional synchronisation.", "created": "2019-06-11T14:16:59.017+0000", "modified": "2019-06-11T14:16:59.017+0000", "resources": [{"id": 1005, "mirId": "MIR:00100447", "urlPattern": "https://www.ebi.ac.uk/biosamples/sample/{$id}", "name": "BioSamples Database at EBI", "description": "BioSamples Database at EBI", "official": true, "providerCode": "ebi", "sampleId": "SAMEA2397676", "resourceHomeUrl": "https://www.ebi.ac.uk/biosamples/", "institution": {"id": 2, "name": "European Bioinformatics Institute", "homeUrl": "https://www.ebi.ac.uk", "description": "At EMBL-EBI, we make the world\u2019s public biological data freely available to the scientific community via a range of services and tools, perform basic research and provide professional training in bioinformatics. \nWe are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states.", "rorId": "https://ror.org/02catss52", "location": {"countryCode": "GB", "countryName": "United Kingdom"}}, "location": {"countryCode": "GB", "countryName": "United Kingdom"}, "deprecated": false, "deprecationDate": null}, {"id": 1006, "mirId": "MIR:00100706", "urlPattern": "http://www.ncbi.nlm.nih.gov/biosample?term={$id}", "name": "BioSample at NCBI", "description": "BioSample at NCBI", "official": false, "providerCode": "ncbi", "sampleId": "SAMN00000002", "resourceHomeUrl": "http://www.ncbi.nlm.nih.gov/biosample", "institution": {"id": 26, "name": "National Center for Biotechnology Information", "homeUrl": "https://www.ncbi.nlm.nih.gov/", "description": "The National Center for Biotechnology Information advances science and health by providing access to biomedical and genomic information.", "rorId": "https://ror.org/02meqm098", "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}, {"id": 1008, "mirId": "MIR:00100707", "urlPattern": "http://trace.ddbj.nig.ac.jp/BSSearch/biosample?acc={$id}", "name": "BioSample at DNA Data Bank of Japan", "description": "BioSample at DNA Data Bank of Japan", "official": false, "providerCode": "ddbj", "sampleId": "SAMD00005257", "resourceHomeUrl": "http://trace.ddbj.nig.ac.jp/biosample/", "institution": {"id": 1007, "name": "Institution DNA Data Bank of Japan, Shizuoka", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "JP", "countryName": "Japan"}}, "location": {"countryCode": "JP", "countryName": "Japan"}, "deprecated": false, "deprecationDate": null}], "sampleId": "SAMEA2397676", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1009, "prefix": "piroplasma", "mirId": "MIR:00000351", "name": "PiroplasmaDB", "pattern": "^TA\\d+$", "description": "PiroplasmaDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. 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This collection refers to developmental stages.", "created": "2019-06-11T14:17:16.333+0000", "modified": "2019-06-11T14:17:16.333+0000", "resources": [{"id": 1212, "mirId": "MIR:00100542", "urlPattern": "http://bgee.unil.ch/bgee/bgee?page=anatomy&action=organs&stage_id={$id}&stage_children=on", "name": "Bgee at Lausanne", "description": "Bgee at Lausanne", "official": false, "providerCode": "sib", "sampleId": "HsapDO:0000004", "resourceHomeUrl": "http://bgee.unil.ch/bgee/bgee", "institution": {"id": 1730, "name": "SIB Swiss Institute of Bioinformatics", "homeUrl": "https://www.sib.swiss", "description": "SIB provides bioinformatics services and resources for scientists and clinicians from academia and industry in Switzerland and worldwide.", "rorId": "https://ror.org/002n09z45", "location": {"countryCode": "CH", "countryName": "Switzerland"}}, "location": {"countryCode": "CH", "countryName": "Switzerland"}, "deprecated": false, "deprecationDate": null}], "sampleId": "HsapDO:0000004", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1213, "prefix": "bgee.organ", "mirId": "MIR:00000420", "name": "Bgee organ", "pattern": "^(XAO|ZFA|EHDAA|EMAPA|EV|MA)\\:\\d+$", "description": "Bgee is a database of gene expression patterns within particular anatomical structures within a species, and between different animal species. This collection refers to anatomical structures.", "created": "2019-06-11T14:17:16.514+0000", "modified": "2019-06-11T14:17:16.514+0000", "resources": [{"id": 1214, "mirId": "MIR:00100543", "urlPattern": "http://bgee.unil.ch/bgee/bgee?page=anatomy&action=organ_details&organ_id={$id}&organ_children=on", "name": "Bgee at Lausanne", "description": "Bgee at Lausanne", "official": false, "providerCode": "sib", "sampleId": "EHDAA:2185", "resourceHomeUrl": "http://bgee.unil.ch/bgee/bgee", "institution": {"id": 1730, "name": "SIB Swiss Institute of Bioinformatics", "homeUrl": "https://www.sib.swiss", "description": "SIB provides bioinformatics services and resources for scientists and clinicians from academia and industry in Switzerland and worldwide.", "rorId": "https://ror.org/002n09z45", "location": {"countryCode": "CH", "countryName": "Switzerland"}}, "location": {"countryCode": "CH", "countryName": "Switzerland"}, "deprecated": false, "deprecationDate": null}], "sampleId": "EHDAA:2185", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1215, "prefix": "biocarta.pathway", "mirId": "MIR:00000421", "name": "BioCarta Pathway", "pattern": "^([hm]\\_)?\\w+Pathway$", "description": "BioCarta is a supplier and distributor of characterized reagents and assays for biopharmaceutical and academic research. It catalogs community produced online maps depicting molecular relationships from areas of active research, generating classical pathways as well as suggestions for new pathways. This collections references pathway maps.", "created": "2019-06-11T14:17:16.688+0000", "modified": "2019-06-11T14:17:16.688+0000", "resources": [{"id": 1216, "mirId": "MIR:00100544", "urlPattern": "https://cgap.nci.nih.gov/Pathways/BioCarta/{$id}", "name": "BioCarta Pathway at NCI", "description": "BioCarta Pathway at NCI", "official": true, "providerCode": "CURATOR_REVIEW", "sampleId": "h_aktPathway", "resourceHomeUrl": "https://www.biocarta.com/", "institution": {"id": 442, "name": "National Cancer Institute, Center for Bioinformatics, Maryland", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}], "sampleId": "h_aktPathway", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1219, "prefix": "gmd.profile", "mirId": "MIR:00000423", "name": "Golm Metabolome Database Profile", "pattern": "^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$", "description": "Golm Metabolome Database (GMD) provides public access to custom mass spectral libraries, metabolite profiling experiments as well as additional information and tools. GMD's metabolite profiles provide relative metabolite concentrations normalised according to fresh weight (or comparable quantitative data, such as volume, cell count, etc.) and internal standards (e.g. ribotol) of biological reference conditions and tissues.", "created": "2019-06-11T14:17:17.038+0000", "modified": "2019-06-11T14:17:17.038+0000", "resources": [{"id": 1220, "mirId": "MIR:00100546", "urlPattern": "http://gmd.mpimp-golm.mpg.de/profile/default.aspx?XemlId={$id}", "name": "Golm Metabolome Database (Profile) at Max Planck Institute of Molecular Plant Physiology", "description": "Golm Metabolome Database (Profile) at Max Planck Institute of Molecular Plant Physiology", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "10b38aaf-b977-4950-85b8-f4775f66658d", "resourceHomeUrl": "http://gmd.mpimp-golm.mpg.de/", "institution": {"id": 806, "name": "Max Planck Institute of Molecular Plant Physiology, Potsdam", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "DE", "countryName": "Germany"}}, "location": {"countryCode": "DE", "countryName": "Germany"}, "deprecated": false, "deprecationDate": null}], "sampleId": "10b38aaf-b977-4950-85b8-f4775f66658d", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1221, "prefix": "gmd.gcms", "mirId": "MIR:00000424", "name": "Golm Metabolome Database GC-MS spectra", "pattern": "^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$", "description": "Golm Metabolome Database (GMD) provides public access to custom mass spectral libraries, metabolite profiling experiments as well as additional information and tools. Analytes are subjected to a gas chromatograph coupled to a mass spectrometer, which records the mass spectrum and the retention time linked to an analyte. This collection references GC-MS spectra.", "created": "2019-06-11T14:17:17.255+0000", "modified": "2019-06-11T14:17:17.255+0000", "resources": [{"id": 1222, "mirId": "MIR:00100547", "urlPattern": "http://gmd.mpimp-golm.mpg.de/Spectrums/{$id}", "name": "Golm Metabolome Database (GC-MS Spectra) at Max Planck Institute of Molecular Plant Physiology", "description": "Golm Metabolome Database (GC-MS Spectra) at Max Planck Institute of Molecular Plant Physiology", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "53d583d8-40c6-40e1-9296-23f821cd77a5", "resourceHomeUrl": "http://gmd.mpimp-golm.mpg.de/", "institution": {"id": 806, "name": "Max Planck Institute of Molecular Plant Physiology, Potsdam", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "DE", "countryName": "Germany"}}, "location": {"countryCode": "DE", "countryName": "Germany"}, "deprecated": false, "deprecationDate": null}], "sampleId": "53d583d8-40c6-40e1-9296-23f821cd77a5", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1223, "prefix": "gmd.ref", "mirId": "MIR:00000425", "name": "Golm Metabolome Database Reference Substance", "pattern": "^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$", "description": "Golm Metabolome Database (GMD) provides public access to custom mass spectral libraries, metabolite profiling experiments as well as additional information and tools. Since metabolites often cannot be obtained in their respective native biological state, for example organic acids may be only acquirable as salts, the concept of reference substance was introduced. This collection references reference substances.", "created": "2019-06-11T14:17:17.475+0000", "modified": "2019-06-11T14:17:17.475+0000", "resources": [{"id": 1224, "mirId": "MIR:00100548", "urlPattern": "http://gmd.mpimp-golm.mpg.de/ReferenceSubstances/{$id}", "name": "Golm Metabolome Database (Reference Substance) at Max Planck Institute of Molecular Plant Physiology", "description": "Golm Metabolome Database (Reference Substance) at Max Planck Institute of Molecular Plant Physiology", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "8cf84adb-b4db-4807-ac98-0004247c35df", "resourceHomeUrl": "http://gmd.mpimp-golm.mpg.de/", "institution": {"id": 806, "name": "Max Planck Institute of Molecular Plant Physiology, Potsdam", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "DE", "countryName": "Germany"}}, "location": {"countryCode": "DE", "countryName": "Germany"}, "deprecated": false, "deprecationDate": null}], "sampleId": "8cf84adb-b4db-4807-ac98-0004247c35df", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1225, "prefix": "gmd.analyte", "mirId": "MIR:00000426", "name": "Golm Metabolome Database Analyte", "pattern": "^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$", "description": "Golm Metabolome Database (GMD) provides public access to custom mass spectral libraries, metabolite profiling experiments as well as additional information and tools. For GC-MS profiling analyses, polar metabolite extracts are chemically converted, i.e. derivatised into less polar and volatile compounds, so called analytes.  This collection references analytes.", "created": "2019-06-11T14:17:17.661+0000", "modified": "2019-06-11T14:17:17.661+0000", "resources": [{"id": 1226, "mirId": "MIR:00100549", "urlPattern": "http://gmd.mpimp-golm.mpg.de/Analytes/{$id}", "name": "Golm Metabolome Database (Analyte) at Max Planck Institute of Molecular Plant Physiology", "description": "Golm Metabolome Database (Analyte) at Max Planck Institute of Molecular Plant Physiology", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "4f0fa9b6-514f-4ff4-98cc-0009bc08eb80", "resourceHomeUrl": "http://gmd.mpimp-golm.mpg.de/", "institution": {"id": 806, "name": "Max Planck Institute of Molecular Plant Physiology, Potsdam", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "DE", "countryName": "Germany"}}, "location": {"countryCode": "DE", "countryName": "Germany"}, "deprecated": false, "deprecationDate": null}], "sampleId": "4f0fa9b6-514f-4ff4-98cc-0009bc08eb80", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1227, "prefix": "intact.molecule", "mirId": "MIR:00000427", "name": "IntAct Molecule", "pattern": "^EBI\\-[0-9]+$", "description": "IntAct provides a freely available, open source database system and analysis tools for protein interaction data. This collection references interactor molecules.", "created": "2019-06-11T14:17:17.850+0000", "modified": "2019-06-11T14:17:17.850+0000", "resources": [{"id": 1228, "mirId": "MIR:00100550", "urlPattern": "https://www.ebi.ac.uk/intact/molecule/{$id}", "name": "IntAct Molecule at EBI", "description": "IntAct Molecule at EBI", "official": false, "providerCode": "ebi", "sampleId": "EBI-366083", "resourceHomeUrl": "https://www.ebi.ac.uk/intact/", "institution": {"id": 2, "name": "European Bioinformatics Institute", "homeUrl": "https://www.ebi.ac.uk", "description": "At EMBL-EBI, we make the world\u2019s public biological data freely available to the scientific community via a range of services and tools, perform basic research and provide professional training in bioinformatics. \nWe are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states.", "rorId": "https://ror.org/02catss52", "location": {"countryCode": "GB", "countryName": "United Kingdom"}}, "location": {"countryCode": "GB", "countryName": "United Kingdom"}, "deprecated": false, "deprecationDate": null}], "sampleId": "EBI-366083", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1229, "prefix": "depod", "mirId": "MIR:00000428", "name": "DEPOD", "pattern": "^[A-Z0-9]+$", "description": "The human DEPhOsphorylation Database (DEPOD) contains information on known human active phosphatases and their experimentally verified protein and nonprotein substrates. Reliability scores are provided for dephosphorylation interactions, according to the type of assay used, as well as the number of laboratories that have confirmed such interaction. Phosphatase and substrate entries are listed along with the dephosphorylation site, bioassay type, and original literature, and contain links to other resources.", "created": "2019-06-11T14:17:18.034+0000", "modified": "2019-06-11T14:17:18.034+0000", "resources": [{"id": 1231, "mirId": "MIR:00100551", "urlPattern": "http://www.depod.bioss.uni-freiburg.de/showp.php?gene={$id}", "name": "DEPOD at EMBL", "description": "DEPOD at EMBL", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "PTPN1", "resourceHomeUrl": "http://www.depod.bioss.uni-freiburg.de", "institution": {"id": 1230, "name": "European Molecular Biology Laboratory EMBL, Heidelberg", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "DE", "countryName": "Germany"}}, "location": {"countryCode": "DE", "countryName": "Germany"}, "deprecated": false, "deprecationDate": null}], "sampleId": "PTPN1", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1232, "prefix": "cst", "mirId": "MIR:00000429", "name": "Cell Signaling Technology Pathways", "pattern": "^[A-Za-z0-9_-]+$", "description": "Cell Signaling Technology is a commercial organisation which provides a pathway portal to showcase their phospho-antibody products. This collection references pathways.", "created": "2019-06-11T14:17:18.324+0000", "modified": "2019-06-11T14:17:18.324+0000", "resources": [{"id": 1234, "mirId": "MIR:00100552", "urlPattern": "http://www.cellsignal.com/reference/pathway/{$id}.html", "name": "CST Pathways at Cell Signaling Technology", "description": "CST Pathways at Cell Signaling Technology", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "Akt_PKB", "resourceHomeUrl": "http://www.cellsignal.com/pathways/index.html", "institution": {"id": 1233, "name": "Cell Signaling Technology, Inc., Danvers, Massachusetts", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}], "sampleId": "Akt_PKB", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1241, "prefix": "phytozome.locus", "mirId": "MIR:00000432", "name": "Phytozome Locus", "pattern": "^[A-Za-z0-9]+$", "description": "Phytozome is a project to facilitate comparative genomic studies amongst green plants. Famlies of orthologous and paralogous genes that represent the modern descendents of ancestral gene sets are constructed at key phylogenetic nodes. These families allow easy access to clade specific orthology/paralogy relationships as well as clade specific genes and gene expansions. This collection references locus information.", "created": "2019-06-11T14:17:19.049+0000", "modified": "2019-06-11T14:17:19.049+0000", "resources": [{"id": 1243, "mirId": "MIR:00100556", "urlPattern": "http://www.phytozome.net/genePage.php?crown&method=0&search=1&detail=1&searchText=locusname:{$id}", "name": "Phytozome Locus at Joint Genome Institute", "description": "Phytozome Locus at Joint Genome Institute", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "Glyma0021s00410", "resourceHomeUrl": "http://www.phytozome.net/", "institution": {"id": 1242, "name": "Joint Genome Institute, California, and the Center for Integrative Genomics, Lausanne", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}], "sampleId": "Glyma0021s00410", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1244, "prefix": "subtilist", "mirId": "MIR:00000433", "name": "SubtiList", "pattern": "^BG\\d+$", "description": "SubtiList serves to collate and integrate various aspects of the genomic information from B. subtilis, the paradigm of sporulating Gram-positive bacteria.\r\nSubtiList provides a complete dataset of DNA and protein sequences derived from the paradigm strain B. subtilis 168, linked to the relevant annotations and functional assignments.", "created": "2019-06-11T14:17:19.310+0000", "modified": "2019-06-11T14:17:19.310+0000", "resources": [{"id": 1246, "mirId": "MIR:00100557", "urlPattern": "http://genolist.pasteur.fr/SubtiList/genome.cgi?external_query+{$id}", "name": "SubtiList at Pasteur Institute", "description": "SubtiList at Pasteur Institute", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "BG11523", "resourceHomeUrl": "http://genolist.pasteur.fr/SubtiList/", "institution": {"id": 1245, "name": "Pasteur Institute, Paris", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "FR", "countryName": "France"}}, "location": {"countryCode": "FR", "countryName": "France"}, "deprecated": false, "deprecationDate": null}], "sampleId": "BG11523", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1247, "prefix": "dailymed", "mirId": "MIR:00000434", "name": "DailyMed", "pattern": "^[A-Za-z0-9-]+", "description": "DailyMed provides information about marketed drugs. This information includes FDA labels (package inserts). The Web site provides a standard, comprehensive, up-to-date, look-up and download resource of medication content and labeling as found in medication package inserts. Drug labeling is the most recent submitted to the Food and Drug Administration (FDA) and currently in use; it may include, for example, strengthened warnings undergoing FDA review or minor editorial changes. These labels have been reformatted to make them easier to read.", "created": "2019-06-11T14:17:19.532+0000", "modified": "2019-06-11T14:17:19.532+0000", "resources": [{"id": 1249, "mirId": "MIR:00100558", "urlPattern": "https://dailymed.nlm.nih.gov/dailymed/drugInfo.cfm?setid={$id}", "name": "DailyMed at NLM", "description": "DailyMed at NLM", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "973a9333-fec7-46dd-8eb5-25738f06ee54", "resourceHomeUrl": "https://dailymed.nlm.nih.gov/dailymed/", "institution": {"id": 1248, "name": "U.S. National Library of Medicine, Bethesda, Maryland", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}], "sampleId": "973a9333-fec7-46dd-8eb5-25738f06ee54", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1250, "prefix": "sider.drug", "mirId": "MIR:00000435", "name": "SIDER Drug", "pattern": "^\\d+$", "description": "SIDER (Side Effect Resource) is a public, computer-readable side effect resource that connects drugs to side effect terms. It aggregates dispersed public information on side effects. This collection references drugs in SIDER.", "created": "2019-06-11T14:17:19.846+0000", "modified": "2019-06-11T14:17:19.846+0000", "resources": [{"id": 1252, "mirId": "MIR:00100559", "urlPattern": "http://sideeffects.embl.de/drugs/{$id}/", "name": "SIDER Drug v2 at EMBL (Heidelberg)", "description": "SIDER Drug v2 at EMBL (Heidelberg)", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "2244", "resourceHomeUrl": "http://sideeffects.embl.de/", "institution": {"id": 1251, "name": "Structural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "DE", "countryName": "Germany"}}, "location": {"countryCode": "DE", "countryName": "Germany"}, "deprecated": false, "deprecationDate": null}], "sampleId": "2244", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1253, "prefix": "sider.effect", "mirId": "MIR:00000436", "name": "SIDER Side Effect", "pattern": "^C\\d+$", "description": "SIDER (Side Effect Resource) is a public, computer-readable side effect resource that connects drugs to side effect terms. 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It stands near to the Yuanmingyuan Garden and the Summer Palace.\nPeking University is proud of its outstanding faculty, including 48 members of the Chinese Academy of Sciences (CAS), 9 members of the Chinese Academy of Engineering (CAE), and 21 members of the Third World Academy of Sciences (TWAS).", "rorId": null, "location": {"countryCode": "CN", "countryName": "China"}}, "location": {"countryCode": "CN", "countryName": "China"}, "deprecated": false, "deprecationDate": null}], "sampleId": "AT1G01030.1", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1310, "prefix": "iuphar.ligand", "mirId": "MIR:00000457", "name": "IUPHAR ligand", "pattern": "^\\d+$", "description": "The IUPHAR Compendium details the molecular, biophysical and pharmacological properties of identified mammalian sodium, calcium and potassium channels, as well as the related cyclic nucleotide-modulated ion channels and the recently described transient receptor potential channels. 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This collection references ligands.", "created": "2019-06-11T14:17:24.936+0000", "modified": "2019-06-11T14:17:24.936+0000", "resources": [{"id": 1311, "mirId": "MIR:00100592", "urlPattern": "http://www.guidetopharmacology.org/GRAC/LigandDisplayForward?ligandId={$id}", "name": "IUPHAR ligand at University of Edinburgh", "description": "IUPHAR ligand at University of Edinburgh", "official": true, "providerCode": "CURATOR_REVIEW", "sampleId": "1755", "resourceHomeUrl": "http://www.guidetopharmacology.org/GRAC/LigandListForward?database=all", "institution": {"id": 827, "name": "Centre for Cardiovascular Science, University of Edinburgh, Edinburgh", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "GB", "countryName": "United Kingdom"}}, "location": {"countryCode": "GB", "countryName": "United Kingdom"}, "deprecated": false, "deprecationDate": null}], "sampleId": "1755", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1312, "prefix": "molbase", "mirId": "MIR:00000458", "name": "Molbase", "pattern": "^(\\d{1,7}\\-\\d{2}\\-\\d)|([A-Za-z0-9\\+\\-\\_]+)$", "description": "Molbase provides compound data information for researchers as well as listing suppliers and price information. 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The experimental data include large amounts of mass spectrometry results from protein co-purification experiments, yeast two-hybrid interaction experiments, fluorescence microscopy images and protein structure predictions.", "created": "2019-06-11T14:17:25.397+0000", "modified": "2019-06-11T14:17:25.397+0000", "resources": [{"id": 1317, "mirId": "MIR:00100594", "urlPattern": "http://yeastrc.org/pdr/viewProtein.do?id={$id}", "name": "YRC PDR at University of Washington", "description": "YRC PDR at University of Washington", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "2673500", "resourceHomeUrl": "http://www.yeastrc.org/pdr/", "institution": {"id": 1316, "name": "Department of Biochemistry, University of Washington, Seattle", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}], "sampleId": "2673500", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1318, "prefix": "yid", "mirId": "MIR:00000460", "name": "Yeast Intron Database v3", "pattern": "^[A-Z0-9]+$", "description": "The YEast Intron Database (version 3) contains information on the spliceosomal introns of the yeast Saccharomyces cerevisiae. It includes expression data that relates to the efficiency of splicing relative to other processes in strains of yeast lacking nonessential splicing factors.  The data are displayed on each intron page. An updated version of the database is available through [MIR:00000521].", "created": "2019-06-11T14:17:25.610+0000", "modified": "2019-06-11T14:17:25.610+0000", "resources": [{"id": 1320, "mirId": "MIR:00100595", "urlPattern": "http://metarray.ucsc.edu/cgi-bin/intron/yirIntrondb?orfName={$id}", "name": "Yeast Intron Database version 3 at Baskin School of Engineering", "description": "Yeast Intron Database version 3 at Baskin School of Engineering", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "SNR17A", "resourceHomeUrl": "http://compbio.soe.ucsc.edu/yeast_introns.html", "institution": {"id": 1319, "name": "University of California, Santa Cruz", "homeUrl": "https://www.ucsc.edu", "description": "UC Santa Cruz opened in 1965 with 650 students. During the 2018-2019 academic year, 16,983 undergraduate and 1,822 graduate students were enrolled.\n", "rorId": "https://ror.org/03s65by71", "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}], "sampleId": "SNR17A", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1321, "prefix": "funcbase.fly", "mirId": "MIR:00000461", "name": "FuncBase Fly", "pattern": "^\\d+$", "description": "Computational gene function prediction can serve to focus experimental resources on high-priority experimental tasks. FuncBase is a web resource for viewing quantitative machine learning-based gene function annotations. Quantitative annotations of genes, including fungal and mammalian genes, with Gene Ontology terms are accompanied by a community feedback system. Evidence underlying function annotations is shown. FuncBase provides links to external resources, and may be accessed directly or via links from species-specific databases. This collection references Drosophila data.", "created": "2019-06-11T14:17:25.854+0000", "modified": "2019-06-11T14:17:25.854+0000", "resources": [{"id": 1323, "mirId": "MIR:00100596", "urlPattern": "http://func.mshri.on.ca/fly/genes/list_functional_scores/{$id}", "name": "FuncBase Fly at Harvard Medical School", "description": "FuncBase Fly at Harvard Medical School", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "10194", "resourceHomeUrl": "http://func.mshri.on.ca/fly", "institution": {"id": 1322, "name": "Harvard Medical School, Boston, Massachusetts", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}], "sampleId": "10194", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1324, "prefix": "funcbase.human", "mirId": "MIR:00000462", "name": "FuncBase Human", "pattern": "^\\d+$", "description": "Computational gene function prediction can serve to focus experimental resources on high-priority experimental tasks. 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This collection references human data.", "created": "2019-06-11T14:17:26.074+0000", "modified": "2019-06-11T14:17:26.074+0000", "resources": [{"id": 1325, "mirId": "MIR:00100597", "urlPattern": "http://func.mshri.on.ca/human/genes/list_functional_scores/{$id}", "name": "FuncBase Human at Harvard Medical School", "description": "FuncBase Human at Harvard Medical School", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "119514", "resourceHomeUrl": "http://func.mshri.on.ca/human/", "institution": {"id": 1322, "name": "Harvard Medical School, Boston, Massachusetts", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}], "sampleId": "119514", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1326, "prefix": "funcbase.mouse", "mirId": "MIR:00000463", "name": "FuncBase Mouse", "pattern": "^\\d+$", "description": "Computational gene function prediction can serve to focus experimental resources on high-priority experimental tasks. 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This collection references mouse.", "created": "2019-06-11T14:17:26.285+0000", "modified": "2019-06-11T14:17:26.285+0000", "resources": [{"id": 1327, "mirId": "MIR:00100598", "urlPattern": "http://func.mshri.on.ca/mouse/genes/list_functional_scores/{$id}", "name": "FuncBase Mouse at Harvard Medical School", "description": "FuncBase Mouse at Harvard Medical School", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "1351341", "resourceHomeUrl": "http://func.mshri.on.ca/mouse/", "institution": {"id": 1322, "name": "Harvard Medical School, Boston, Massachusetts", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}], "sampleId": "1351341", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1881, "prefix": "cbioportal", "mirId": "MIR:00000679", "name": "The cBioPortal for Cancer Genomics", "pattern": "^[a-z0-9\\_]+$", "description": "The cBioPortal for Cancer Genomics provides visualization, analysis and download of large-scale cancer genomics data sets.", "created": "2019-06-11T14:18:18.874+0000", "modified": "2019-06-11T14:18:18.874+0000", "resources": [{"id": 1883, "mirId": "MIR:00100909", "urlPattern": "http://www.cbioportal.org/study?id={$id}#summary", "name": "The cBioPortal for Cancer Genomics", "description": "The cBioPortal for Cancer Genomics", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "laml_tcga_pub", "resourceHomeUrl": "http://www.cbioportal.org", "institution": {"id": 1882, "name": "Memorial Sloan Kettering Cancer Center", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}], "sampleId": "laml_tcga_pub", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1328, "prefix": "funcbase.yeast", "mirId": "MIR:00000464", "name": "FuncBase Yeast", "pattern": "^\\d+$", "description": "Computational gene function prediction can serve to focus experimental resources on high-priority experimental tasks. 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This collection references yeast.", "created": "2019-06-11T14:17:26.470+0000", "modified": "2019-06-11T14:17:26.470+0000", "resources": [{"id": 1329, "mirId": "MIR:00100599", "urlPattern": "http://func.mshri.on.ca/yeast/genes/list_functional_scores/{$id}", "name": "FuncBase Yeast at Harvard Medical School", "description": "FuncBase Yeast at Harvard Medical School", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "2701", "resourceHomeUrl": "http://func.mshri.on.ca/yeast", "institution": {"id": 1322, "name": "Harvard Medical School, Boston, Massachusetts", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}], "sampleId": "2701", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1330, "prefix": "ydpm", "mirId": "MIR:00000465", "name": "YDPM", "pattern": "^Y[A-Z]{2}\\d+[CW]$", "description": "The YDPM database serves to support the Yeast Deletion and the Mitochondrial Proteomics Project. The project aims to increase the understanding of mitochondrial function and biogenesis in the context of the cell. In the Deletion Project, strains from the deletion collection were monitored under 9 different media conditions selected for the study of mitochondrial function. The YDPM database contains both the raw data and growth rates calculated for each strain in each media condition.", "created": "2019-06-11T14:17:26.654+0000", "modified": "2019-06-11T14:17:26.654+0000", "resources": [{"id": 1332, "mirId": "MIR:00100600", "urlPattern": "http://www-deletion.stanford.edu/cgi-bin/YDPM/YDPM_search.cgi?thelist={$id}", "name": "YDPM at Stanford University School of Medicine", "description": "YDPM at Stanford University School of Medicine", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "YAL001C", "resourceHomeUrl": "http://www-deletion.stanford.edu/YDPM/", "institution": {"id": 1331, "name": "Stanford University School of Medicine, Stanford, California", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}], "sampleId": "YAL001C", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1333, "prefix": "wb.rnai", "mirId": "MIR:00000466", "name": "WormBase RNAi", "pattern": "^WBRNAi\\d{8}$", "description": "WormBase is an online bioinformatics database of the biology and genome of the model organism Caenorhabditis elegans and related nematodes. It is used by the C. elegans research community both as an information resource and as a mode to publish and distribute their results. This collection references RNAi experiments, detailing target and phenotypes.", "created": "2019-06-11T14:17:26.886+0000", "modified": "2019-06-11T14:17:26.886+0000", "resources": [{"id": 1334, "mirId": "MIR:00100601", "urlPattern": "https://www.wormbase.org/species/c_elegans/rnai/{$id}", "name": "WormBase RNAi", "description": "WormBase RNAi", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "WBRNAi00086878", "resourceHomeUrl": "https://www.wormbase.org/", "institution": {"id": 2, "name": "European Bioinformatics Institute", "homeUrl": "https://www.ebi.ac.uk", "description": "At EMBL-EBI, we make the world\u2019s public biological data freely available to the scientific community via a range of services and tools, perform basic research and provide professional training in bioinformatics. \nWe are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states.", "rorId": "https://ror.org/02catss52", "location": {"countryCode": "GB", "countryName": "United Kingdom"}}, "location": {"countryCode": "GB", "countryName": "United Kingdom"}, "deprecated": false, "deprecationDate": null}], "sampleId": "WBRNAi00086878", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1335, "prefix": "pass2", "mirId": "MIR:00000468", "name": "PASS2", "pattern": "^\\d+$", "description": "The PASS2 database provides alignments of proteins related at the superfamily level and are characterized by low sequence identity.", "created": "2019-06-11T14:17:27.086+0000", "modified": "2019-06-11T14:17:27.086+0000", "resources": [{"id": 1337, "mirId": "MIR:00100603", "urlPattern": "http://caps.ncbs.res.in/cgi-bin/pass2//show_sf.py?sf_id={$id}", "name": "PASS2 at National centre for Biological Sciences (India)", "description": "PASS2 at National centre for Biological Sciences (India)", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "46977", "resourceHomeUrl": "http://caps.ncbs.res.in/pass2/", "institution": {"id": 1336, "name": "National centre for Biological Sciences, TIFR, GKVK campus, Bangalore, Karnataka", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "IN", "countryName": "India"}}, "location": {"countryCode": "IN", "countryName": "India"}, "deprecated": false, "deprecationDate": null}], "sampleId": "46977", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1338, "prefix": "iceberg.element", "mirId": "MIR:00000469", "name": "ICEberg element", "pattern": "^\\d+$", "description": "ICEberg (Integrative and conjugative elements) is a database of integrative and conjugative elements (ICEs) found in bacteria. ICEs are conjugative self-transmissible elements that can integrate into and excise from a host chromosome, and can carry likely virulence determinants, antibiotic-resistant factors and/or genes coding for other beneficial traits. It contains details of ICEs found in representatives bacterial species, and which are organised as families. This collection references ICE elements.", "created": "2019-06-11T14:17:27.338+0000", "modified": "2019-06-11T14:17:27.338+0000", "resources": [{"id": 1340, "mirId": "MIR:00100604", "urlPattern": "http://db-mml.sjtu.edu.cn/ICEberg/feature_page.php?ice_id={$id}", "name": "ICEberg element at Shanghai Jiaotong University", "description": "ICEberg element at Shanghai Jiaotong University", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "100", "resourceHomeUrl": "http://db-mml.sjtu.edu.cn/ICEberg/", "institution": {"id": 1339, "name": "State Key Laboratory of Microbial Metabolism and School of Life Sciences &amp;amp;amp;amp; Biotechnology, Shanghai Jiaotong University, Shanghai", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "CN", "countryName": "China"}}, "location": {"countryCode": "CN", "countryName": "China"}, "deprecated": false, "deprecationDate": null}], "sampleId": "100", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1341, "prefix": "iceberg.family", "mirId": "MIR:00000470", "name": "ICEberg family", "pattern": "^\\d+$", "description": "ICEberg (Integrative and conjugative elements) is a database of integrative and conjugative elements (ICEs) found in bacteria. ICEs are conjugative self-transmissible elements that can integrate into and excise from a host chromosome, and can carry likely virulence determinants, antibiotic-resistant factors and/or genes coding for other beneficial traits. It contains details of ICEs found in representatives bacterial species, and which are organised as families. This collection references ICE families.", "created": "2019-06-11T14:17:27.601+0000", "modified": "2019-06-11T14:17:27.601+0000", "resources": [{"id": 1343, "mirId": "MIR:00100605", "urlPattern": "http://db-mml.sjtu.edu.cn/ICEberg/browse_result.php?type=fam&fam_id={$id}", "name": "ICEberg family at Shanghai Jiaotong University", "description": "ICEberg family at Shanghai Jiaotong University", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "1", "resourceHomeUrl": "http://db-mml.sjtu.edu.cn/ICEberg/", "institution": {"id": 1342, "name": "State Key Laboratory of Microbial Metabolism and School of Life Sciences &amp;amp; Biotechnology, Shanghai Jiaotong University, Shanghai", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "CN", "countryName": "China"}}, "location": {"countryCode": "CN", "countryName": "China"}, "deprecated": false, "deprecationDate": null}], "sampleId": "1", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1344, "prefix": "vfdb.genus", "mirId": "MIR:00000471", "name": "VFDB Genus", "pattern": "^\\w+$", "description": "VFDB is a repository of virulence factors (VFs) of pathogenic bacteria.This collection references VF information by Genus.", "created": "2019-06-11T14:17:27.811+0000", "modified": "2019-06-11T14:17:27.811+0000", "resources": [{"id": 1346, "mirId": "MIR:00100606", "urlPattern": "http://www.mgc.ac.cn/cgi-bin/VFs/genus.cgi?Genus={$id}", "name": "VFDB Genus at Institute of Pathogen Biology", "description": "VFDB Genus at Institute of Pathogen Biology", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "Chlamydia", "resourceHomeUrl": "http://www.mgc.ac.cn/VFs/", "institution": {"id": 1345, "name": "State Key Laboratory for Molecular Virology and Genetic Engineering, Institute of Pathogen Biology, Chinese Academy Medical Sciences and Peking Union Medical College, Beijing", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "CN", "countryName": "China"}}, "location": {"countryCode": "CN", "countryName": "China"}, "deprecated": false, "deprecationDate": null}], "sampleId": "Chlamydia", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1347, "prefix": "vfdb.gene", "mirId": "MIR:00000472", "name": "VFDB Gene", "pattern": "^\\w+$", "description": "VFDB is a repository of virulence factors (VFs) of pathogenic bacteria.This collection references VF genes.", "created": "2019-06-11T14:17:28.027+0000", "modified": "2019-06-11T14:17:28.027+0000", "resources": [{"id": 1348, "mirId": "MIR:00100607", "urlPattern": "http://www.mgc.ac.cn/cgi-bin/VFs/gene.cgi?GeneID={$id}", "name": "VFDB Gene at Institute of Pathogen Biology", "description": "VFDB Gene at Institute of Pathogen Biology", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "VFG2154", "resourceHomeUrl": "http://www.mgc.ac.cn/VFs/", "institution": {"id": 1345, "name": "State Key Laboratory for Molecular Virology and Genetic Engineering, Institute of Pathogen Biology, Chinese Academy Medical Sciences and Peking Union Medical College, Beijing", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "CN", "countryName": "China"}}, "location": {"countryCode": "CN", "countryName": "China"}, "deprecated": false, "deprecationDate": null}], "sampleId": "VFG2154", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1349, "prefix": "mesh.2013", "mirId": "MIR:00000473", "name": "MeSH 2013", "pattern": "^[A-Za-z0-9]+$", "description": "MeSH (Medical Subject Headings) is the National Library of Medicine's controlled vocabulary thesaurus. 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This thesaurus is used by NLM for indexing articles from biomedical journals, cataloging of books, documents, etc. This collection references MeSH terms published in 2013.", "created": "2019-06-11T14:17:28.224+0000", "modified": "2019-06-11T14:17:28.224+0000", "resources": [{"id": 1350, "mirId": "MIR:00100608", "urlPattern": "http://www.nlm.nih.gov/cgi/mesh/2013/MB_cgi?mode=&index={$id}&view=expanded", "name": "MeSH 2013 at National Library of Medicine", "description": "MeSH 2013 at National Library of Medicine", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "17165", "resourceHomeUrl": "http://www.nlm.nih.gov/mesh/", "institution": {"id": 792, "name": "U.S. National Library of Medicine, National Institute of Health, Maryland", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}], "sampleId": "17165", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1351, "prefix": "kegg.module", "mirId": "MIR:00000474", "name": "KEGG Module", "pattern": "^([a-z]{3,5}_)?M\\d{5}$", "description": "KEGG Modules are manually defined functional units used in the annotation and biological interpretation of sequenced genomes. Each module corresponds to a set of 'KEGG Orthology' (MIR:00000116) entries. KEGG Modules can represent pathway, structural, functional or signature modules.", "created": "2019-06-11T14:17:28.414+0000", "modified": "2019-06-11T14:17:28.414+0000", "resources": [{"id": 1352, "mirId": "MIR:00100609", "urlPattern": "http://www.kegg.jp/entry/{$id}", "name": "KEGG Module at Kyoto University Bioinformatics Center", "description": "KEGG Module at Kyoto University Bioinformatics Center", "official": true, "providerCode": "CURATOR_REVIEW", "sampleId": "M00002", "resourceHomeUrl": "http://www.kegg.jp/kegg/module.html", "institution": {"id": 367, "name": "Department of Computational Biology, University of Tokyo, Tokyo", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "JP", "countryName": "Japan"}}, "location": {"countryCode": "JP", "countryName": "Japan"}, "deprecated": false, "deprecationDate": null}], "sampleId": "M00002", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1353, "prefix": "kegg.disease", "mirId": "MIR:00000475", "name": "KEGG Disease", "pattern": "^H\\d+$", "description": "The KEGG DISEASE database is a collection of disease entries capturing knowledge on genetic and environmental perturbations. Each disease entry contains a list of known genetic factors (disease genes), environmental factors, diagnostic markers, and therapeutic drugs. Diseases are viewed as perturbed states of the molecular system, and drugs as perturbants to the molecular system.", "created": "2019-06-11T14:17:28.601+0000", "modified": "2019-06-11T14:17:28.601+0000", "resources": [{"id": 1354, "mirId": "MIR:00100610", "urlPattern": "http://www.kegg.jp/entry/{$id}", "name": "KEGG Disease at Kyoto University Bioinformatics Center", "description": "KEGG Disease at Kyoto University Bioinformatics Center", "official": true, "providerCode": "CURATOR_REVIEW", "sampleId": "H00076", "resourceHomeUrl": "http://www.genome.jp/kegg/disease/", "institution": {"id": 705, "name": "Kyoto University Bioinformatics Center, Kyoto", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "JP", "countryName": "Japan"}}, "location": {"countryCode": "JP", "countryName": "Japan"}, "deprecated": false, "deprecationDate": null}], "sampleId": "H00076", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1355, "prefix": "medlineplus", "mirId": "MIR:00000476", "name": "MedlinePlus", "pattern": "^\\d+$", "description": "MedlinePlus is the National Institutes of Health's Web site for patients and their families and friends. 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This collection references Glycoepitopes.", "created": "2019-06-11T14:17:29.214+0000", "modified": "2019-06-11T14:17:29.214+0000", "resources": [{"id": 1362, "mirId": "MIR:00100613", "urlPattern": "https://www.glycoepitope.jp/epitopes/{$id}", "name": "GlycoEpitope at Ritsumeikan University", "description": "GlycoEpitope at Ritsumeikan University", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "EP0311", "resourceHomeUrl": "https://www.glycoepitope.jp/epitopes/", "institution": {"id": 1361, "name": "Kawasaki laboratory, Research Center for Glycobiotechnology, Ritsumeikan University", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "JP", "countryName": "Japan"}}, "location": {"countryCode": "JP", "countryName": "Japan"}, "deprecated": false, "deprecationDate": null}], "sampleId": "EP0311", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1363, "prefix": "jcggdb", "mirId": "MIR:00000479", "name": "JCGGDB", "pattern": "^JCGG-STR\\d{6}$", "description": "JCGGDB (Japan Consortium for Glycobiology and Glycotechnology DataBase) is a database that aims to integrate all glycan-related data held in various repositories in Japan. 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ASI is unique since it is structured as   comprehensive system supporting the full range of scientific fields including high energy/nuclear/astro-physics, condensed matter physics, chemistry, electronic engineering, biology and medicine.", "rorId": "https://ror.org/030vbmf58", "location": {"countryCode": "JP", "countryName": "Japan"}}, "location": {"countryCode": "JP", "countryName": "Japan"}, "deprecated": false, "deprecationDate": null}], "sampleId": "JCGG-STR008690", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1366, "prefix": "noncodev4.gene", "mirId": "MIR:00000480", "name": "NONCODE v4 Gene", "pattern": "^NONHSAG\\d{5}$", "description": "NONCODE is a database of expression and functional lncRNA (long noncoding RNA) data obtained from microarray studies. LncRNAs have been shown to play key roles in various biological processes such as imprinting control, circuitry controlling pluripotency and differentiation, immune responses and chromosome dynamics. The collection references NONCODE version 4 and relates to gene regions.", "created": "2019-06-11T14:17:29.649+0000", "modified": "2019-06-11T14:17:29.649+0000", "resources": [{"id": 1367, "mirId": "MIR:00100616", "urlPattern": "http://www.bioinfo.org/NONCODEv4/show_gene.php?id={$id}", "name": "NONCODE v4 Gene at Chinese Academy of Sciences", "description": "NONCODE v4 Gene at Chinese Academy of Sciences", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "NONHSAG00001", "resourceHomeUrl": "http://www.bioinfo.org/NONCODEv4/", "institution": {"id": 737, "name": "Chinese Academy of Sciences", "homeUrl": "http://english.cas.cn/", "description": "The Chinese Academy of Sciences is the linchpin of China\u2019s drive to explore and harness high technology and the natural sciences for the benefit of China and the world. 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LncRNAs have been shown to play key roles in various biological processes such as imprinting control, circuitry controlling pluripotency and differentiation, immune responses and chromosome dynamics. The collection references NONCODE version 4 and relates to individual transcripts.", "created": "2019-06-11T14:17:29.833+0000", "modified": "2019-06-11T14:17:29.833+0000", "resources": [{"id": 1369, "mirId": "MIR:00100617", "urlPattern": "http://www.bioinfo.org/NONCODEv4/show_rna.php?id={$id}", "name": "NONCODE v4 Transcript at Chinese Academy of Sciences", "description": "NONCODE v4 Transcript at Chinese Academy of Sciences", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "NONHSAT000001", "resourceHomeUrl": "http://www.bioinfo.org/NONCODEv4/", "institution": {"id": 737, "name": "Chinese Academy of Sciences", "homeUrl": "http://english.cas.cn/", "description": "The Chinese Academy of Sciences is the linchpin of China\u2019s drive to explore and harness high technology and the natural sciences for the benefit of China and the world. 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Developmental and anatomical descriptions include in situ gene expression data serving as stage and tissue markers. This collection references gene information.", "created": "2019-06-11T14:17:30.027+0000", "modified": "2019-06-11T14:17:30.027+0000", "resources": [{"id": 1372, "mirId": "MIR:00100618", "urlPattern": "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/gene/detail/{$id}", "name": "Oryzabase v4 Gene at National Institute of Genetics (Japan)", "description": "Oryzabase v4 Gene at National Institute of Genetics (Japan)", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "117", "resourceHomeUrl": "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/", "institution": {"id": 1371, "name": "Genetic Strains Research Center, National Institute of Genetics, Mishima, Shizuoka", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "JP", "countryName": "Japan"}}, "location": {"countryCode": "JP", "countryName": "Japan"}, "deprecated": false, "deprecationDate": null}], "sampleId": "117", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1373, "prefix": "oryzabase.mutant", "mirId": "MIR:00000483", "name": "Oryzabase Mutant", "pattern": "^\\d+$", "description": "Oryzabase provides a view of rice (Oryza sativa) as a model monocot plant by integrating biological data with molecular genomic information. It contains information about rice development and anatomy, rice mutants, and genetic resources, especially for wild varieties of rice. Developmental and anatomical descriptions include in situ gene expression data serving as stage and tissue markers. This collection references mutant strain information.", "created": "2019-06-11T14:17:30.248+0000", "modified": "2019-06-11T14:17:30.248+0000", "resources": [{"id": 1374, "mirId": "MIR:00100619", "urlPattern": "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/strain/inducedMutationLine/detail/{$id}", "name": "Oryzabase v4 Mutant at National Institute of Genetics (Japan)", "description": "Oryzabase v4 Mutant at National Institute of Genetics (Japan)", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "21393", "resourceHomeUrl": "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/", "institution": {"id": 1371, "name": "Genetic Strains Research Center, National Institute of Genetics, Mishima, Shizuoka", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "JP", "countryName": "Japan"}}, "location": {"countryCode": "JP", "countryName": "Japan"}, "deprecated": false, "deprecationDate": null}], "sampleId": "21393", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1375, "prefix": "oryzabase.strain", "mirId": "MIR:00000484", "name": "Oryzabase Strain", "pattern": "^\\d+$", "description": "Oryzabase provides a view of rice (Oryza sativa) as a model monocot plant by integrating biological data with molecular genomic information. 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This collection references wild strain information.", "created": "2019-06-11T14:17:30.425+0000", "modified": "2019-06-11T14:17:30.425+0000", "resources": [{"id": 1376, "mirId": "MIR:00100620", "urlPattern": "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/strain/wildCore/detail/{$id}", "name": "Oryzabase v4 Strain at National Institute of Genetics (Japan)", "description": "Oryzabase v4 Strain at National Institute of Genetics (Japan)", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "1", "resourceHomeUrl": "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/", "institution": {"id": 1371, "name": "Genetic Strains Research Center, National Institute of Genetics, Mishima, Shizuoka", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "JP", "countryName": "Japan"}}, "location": {"countryCode": "JP", "countryName": "Japan"}, "deprecated": false, "deprecationDate": null}], "sampleId": "1", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1377, "prefix": "oryzabase.stage", "mirId": "MIR:00000485", "name": "Oryzabase Stage", "pattern": "^\\d+$", "description": "Oryzabase provides a view of rice (Oryza sativa) as a model monocot plant by integrating biological data with molecular genomic information. 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This collection references development stage information.", "created": "2019-06-11T14:17:30.616+0000", "modified": "2019-06-11T14:17:30.616+0000", "resources": [{"id": 1378, "mirId": "MIR:00100621", "urlPattern": "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/devstageineachorgan/detail/{$id}", "name": "Oryzabase v4 Stage at National Institute of Genetics (Japan)", "description": "Oryzabase v4 Stage at National Institute of Genetics (Japan)", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "34", "resourceHomeUrl": "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/", "institution": {"id": 1371, "name": "Genetic Strains Research Center, National Institute of Genetics, Mishima, Shizuoka", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "JP", "countryName": "Japan"}}, "location": {"countryCode": "JP", "countryName": "Japan"}, "deprecated": false, "deprecationDate": null}], "sampleId": "34", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1379, "prefix": "otl", "mirId": "MIR:00000486", "name": "Oryza Tag Line", "pattern": "^A[A-Z]+\\d+$", "description": "Oryza Tag Line is a database that was developed to collect information generated from the characterization of rice (Oryza sativa L cv. 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It collates morpho-physiological alterations observed during field evaluation, with each insertion line documented through a generic passport data including production records, seed stocks and FST information.", "created": "2019-06-11T14:17:30.833+0000", "modified": "2019-06-11T14:17:30.833+0000", "resources": [{"id": 1381, "mirId": "MIR:00100622", "urlPattern": "http://oryzatagline.cirad.fr/cgi-bin/general_mutant.pl?line={$id}", "name": "Oryza Tag Line at CIRAD-INRA-SUPAGRO-UMI", "description": "Oryza Tag Line at CIRAD-INRA-SUPAGRO-UMI", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "AADB12", "resourceHomeUrl": "http://oryzatagline.cirad.fr/", "institution": {"id": 1380, "name": "CIRAD-INRA-SUPAGRO-UMII, Biological Systems Department, Montpellier", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "FR", "countryName": "France"}}, "location": {"countryCode": "FR", "countryName": "France"}, "deprecated": false, "deprecationDate": null}], "sampleId": "AADB12", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1382, "prefix": "genewiki", "mirId": "MIR:00000487", "name": "Gene Wiki", "pattern": "^\\d+$", "description": "The Gene Wiki is project which seeks to provide detailed information on human genes. Initial 'stub' articles are created in an automated manner, with further information added by the community. 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Each record in TOPDB also contains information on the given protein sequence, name, organism and cross references to various other databases.", "created": "2019-06-11T14:17:35.217+0000", "modified": "2019-06-11T14:17:35.217+0000", "resources": [{"id": 1427, "mirId": "MIR:00100644", "urlPattern": "http://topdb.enzim.hu/?m=show&id={$id}", "name": "TOPDB at Hungarian Academy of Sciences", "description": "TOPDB at Hungarian Academy of Sciences", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "AP00378", "resourceHomeUrl": "http://topdb.enzim.hu/", "institution": {"id": 1426, "name": "Institute of Enzymology, Hungarian Academy of Sciences, Budapest", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "HU", "countryName": "Hungary"}}, "location": {"countryCode": "HU", "countryName": "Hungary"}, "deprecated": false, "deprecationDate": null}], "sampleId": "AP00378", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1428, "prefix": "cattleqtldb", "mirId": "MIR:00000504", "name": "Animal Genome Cattle QTL", "pattern": "^\\d+$", "description": "The Animal Quantitative Trait Loci (QTL) database (Animal QTLdb) is designed to house publicly all available QTL and single-nucleotide polymorphism/gene association data on livestock animal species. This collection references cattle QTLs.", "created": "2019-06-11T14:17:35.485+0000", "modified": "2019-06-11T14:17:35.485+0000", "resources": [{"id": 1430, "mirId": "MIR:00100645", "urlPattern": "https://www.animalgenome.org/QTLdb/q?id=QTL_ID:{$id}", "name": "Animal QTL Cattle at Iowa State University", "description": "Animal QTL Cattle at Iowa State University", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "4685", "resourceHomeUrl": "https://www.animalgenome.org/QTLdb", "institution": {"id": 1429, "name": "Department of Animal Science and Center for Integrated Animal Genomics, Iowa State University, Iowa", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}], "sampleId": "4685", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1431, "prefix": "chickenqtldb", "mirId": "MIR:00000505", "name": "Animal Genome Chicken QTL", "pattern": "^\\d+$", "description": "The Animal Quantitative Trait Loci (QTL) database (Animal QTLdb) is designed to house publicly all available QTL and single-nucleotide polymorphism/gene association data on livestock animal species. This collection references chicken QTLs.", "created": "2019-06-11T14:17:35.752+0000", "modified": "2019-06-11T14:17:35.752+0000", "resources": [{"id": 1432, "mirId": "MIR:00100646", "urlPattern": "https://www.animalgenome.org/QTLdb/q?id=QTL_ID:{$id}", "name": "Animal QTL Chicken at Iowa State University", "description": "Animal QTL Chicken at Iowa State University", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "14362", "resourceHomeUrl": "https://www.animalgenome.org/QTLdb", "institution": {"id": 1429, "name": "Department of Animal Science and Center for Integrated Animal Genomics, Iowa State University, Iowa", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}], "sampleId": "14362", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1433, "prefix": "pigqtldb", "mirId": "MIR:00000506", "name": "Animal Genome Pig QTL", "pattern": "^\\d+$", "description": "The Animal Quantitative Trait Loci (QTL) database (Animal QTLdb) is designed to house publicly all available QTL and single-nucleotide polymorphism/gene association data on livestock animal species. This collection references pig QTLs.", "created": "2019-06-11T14:17:35.969+0000", "modified": "2019-06-11T14:17:35.969+0000", "resources": [{"id": 1434, "mirId": "MIR:00100647", "urlPattern": "https://www.animalgenome.org/QTLdb/q?id=QTL_ID:{$id}", "name": "Animal QTL Pig at Iowa State University", "description": "Animal QTL Pig at Iowa State University", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "14", "resourceHomeUrl": "https://www.animalgenome.org/QTLdb", "institution": {"id": 1429, "name": "Department of Animal Science and Center for Integrated Animal Genomics, Iowa State University, Iowa", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}], "sampleId": "14", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1435, "prefix": "sheepqtldb", "mirId": "MIR:00000507", "name": "Animal Genome Sheep QTL", "pattern": "^\\d+$", "description": "The Animal Quantitative Trait Loci (QTL) database (Animal QTLdb) is designed to house publicly all available QTL and single-nucleotide polymorphism/gene association data on livestock animal species. This collection references sheep QTLs.", "created": "2019-06-11T14:17:36.183+0000", "modified": "2019-06-11T14:17:36.183+0000", "resources": [{"id": 1436, "mirId": "MIR:00100648", "urlPattern": "https://www.animalgenome.org/QTLdb/q?id=QTL_ID:{$id}", "name": "Animal QTL Sheep at Iowa State University", "description": "Animal QTL Sheep at Iowa State University", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "19803", "resourceHomeUrl": "https://www.animalgenome.org/QTLdb", "institution": {"id": 1429, "name": "Department of Animal Science and Center for Integrated Animal Genomics, Iowa State University, Iowa", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}], "sampleId": "19803", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1439, "prefix": "mgnify.samp", "mirId": "MIR:00000510", "name": "MGnify Sample", "pattern": "^[A-Z]+[0-9]+$", "description": "The EBI Metagenomics service is an automated pipeline for the analysis and archiving of metagenomic data that aims to provide insights into the phylogenetic diversity as well as the functional and metabolic potential of a sample. Metagenomics is the study of all genomes present in any given environment without the need for prior individual identification or amplification. This collection references samples.", "created": "2019-06-11T14:17:36.594+0000", "modified": "2019-06-11T14:17:36.594+0000", "resources": [{"id": 1440, "mirId": "MIR:00100656", "urlPattern": "https://www.ebi.ac.uk/metagenomics/samples/{$id}", "name": "MGnify Sample", "description": "MGnify Sample", "official": false, "providerCode": "ebi", "sampleId": "SRS086444", "resourceHomeUrl": "https://www.ebi.ac.uk/metagenomics", "institution": {"id": 2, "name": "European Bioinformatics Institute", "homeUrl": "https://www.ebi.ac.uk", "description": "At EMBL-EBI, we make the world\u2019s public biological data freely available to the scientific community via a range of services and tools, perform basic research and provide professional training in bioinformatics. \nWe are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states.", "rorId": "https://ror.org/02catss52", "location": {"countryCode": "GB", "countryName": "United Kingdom"}}, "location": {"countryCode": "GB", "countryName": "United Kingdom"}, "deprecated": false, "deprecationDate": null}], "sampleId": "SRS086444", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1441, "prefix": "ega.study", "mirId": "MIR:00000511", "name": "European Genome-phenome Archive Study", "pattern": "^EGAS\\d{11}$", "description": "The EGA is a service for permanent archiving and sharing of all types of personally identifiable genetic and phenotypic data resulting from biomedical research projects. The EGA contains exclusive data collected from individuals whose consent agreements authorize data release only for specific research use or to bona fide researchers. Strict protocols govern how information is managed, stored and distributed by the EGA project. This collection references 'Studies' which are experimental investigations of a particular phenomenon, often drawn from different datasets.", "created": "2019-06-11T14:17:36.823+0000", "modified": "2019-06-11T14:17:36.823+0000", "resources": [{"id": 1442, "mirId": "MIR:00100657", "urlPattern": "https://www.ebi.ac.uk/ega/studies/{$id}", "name": "EGA Study at European Bioinformatics Institute", "description": "EGA Study at European Bioinformatics Institute", "official": true, "providerCode": "ebi", "sampleId": "EGAS00000000001", "resourceHomeUrl": "https://www.ebi.ac.uk/ega/studies", "institution": {"id": 2, "name": "European Bioinformatics Institute", "homeUrl": "https://www.ebi.ac.uk", "description": "At EMBL-EBI, we make the world\u2019s public biological data freely available to the scientific community via a range of services and tools, perform basic research and provide professional training in bioinformatics. \nWe are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states.", "rorId": "https://ror.org/02catss52", "location": {"countryCode": "GB", "countryName": "United Kingdom"}}, "location": {"countryCode": "GB", "countryName": "United Kingdom"}, "deprecated": false, "deprecationDate": null}, {"id": 1443, "mirId": "MIR:00100851", "urlPattern": "https://www.omicsdi.org/dataset/ega/{$id}", "name": "EGA Study through OmicsDI", "description": "EGA Study through OmicsDI", "official": false, "providerCode": "omicsdi", "sampleId": "EGAS00000000001", "resourceHomeUrl": "https://www.omicsdi.org/", "institution": {"id": 2, "name": "European Bioinformatics Institute", "homeUrl": "https://www.ebi.ac.uk", "description": "At EMBL-EBI, we make the world\u2019s public biological data freely available to the scientific community via a range of services and tools, perform basic research and provide professional training in bioinformatics. \nWe are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states.", "rorId": "https://ror.org/02catss52", "location": {"countryCode": "GB", "countryName": "United Kingdom"}}, "location": {"countryCode": "GB", "countryName": "United Kingdom"}, "deprecated": false, "deprecationDate": null}], "sampleId": "EGAS00000000001", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1444, "prefix": "ega.dataset", "mirId": "MIR:00000512", "name": "European Genome-phenome Archive Dataset", "pattern": "^EGAD\\d{11}$", "description": "The EGA is a service for permanent archiving and sharing of all types of personally identifiable genetic and phenotypic data resulting from biomedical research projects. The EGA contains exclusive data collected from individuals whose consent agreements authorize data release only for specific research use or to bona fide researchers. Strict protocols govern how information is managed, stored and distributed by the EGA project. This collection references 'Datasets'.", "created": "2019-06-11T14:17:37.233+0000", "modified": "2019-06-11T14:17:37.233+0000", "resources": [{"id": 1445, "mirId": "MIR:00100658", "urlPattern": "https://www.ebi.ac.uk/ega/datasets/{$id}", "name": "EGA Dataset at European Bioinformatics Institute", "description": "EGA Dataset at European Bioinformatics Institute", "official": true, "providerCode": "ebi", "sampleId": "EGAD00000000001", "resourceHomeUrl": "https://www.ebi.ac.uk/ega/dataset", "institution": {"id": 2, "name": "European Bioinformatics Institute", "homeUrl": "https://www.ebi.ac.uk", "description": "At EMBL-EBI, we make the world\u2019s public biological data freely available to the scientific community via a range of services and tools, perform basic research and provide professional training in bioinformatics. \nWe are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states.", "rorId": "https://ror.org/02catss52", "location": {"countryCode": "GB", "countryName": "United Kingdom"}}, "location": {"countryCode": "GB", "countryName": "United Kingdom"}, "deprecated": false, "deprecationDate": null}, {"id": 1446, "mirId": "MIR:00100852", "urlPattern": "https://www.omicsdi.org/dataset/ega/{$id}", "name": "EGA Dataset through OmicsDI", "description": "EGA Dataset through OmicsDI", "official": false, "providerCode": "omicsdi", "sampleId": "EGAD00000000001", "resourceHomeUrl": "https://www.omicsdi.org/", "institution": {"id": 2, "name": "European Bioinformatics Institute", "homeUrl": "https://www.ebi.ac.uk", "description": "At EMBL-EBI, we make the world\u2019s public biological data freely available to the scientific community via a range of services and tools, perform basic research and provide professional training in bioinformatics. \nWe are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states.", "rorId": "https://ror.org/02catss52", "location": {"countryCode": "GB", "countryName": "United Kingdom"}}, "location": {"countryCode": "GB", "countryName": "United Kingdom"}, "deprecated": false, "deprecationDate": null}], "sampleId": "EGAD00000000001", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1453, "prefix": "pride.project", "mirId": "MIR:00000515", "name": "PRIDE Project", "pattern": "^P(X|R)D\\d{6}$", "description": "The PRIDE PRoteomics IDEntifications database is a centralized, standards compliant, public data repository that provides protein and peptide identifications together with supporting evidence. This collection references projects.", "created": "2019-06-11T14:17:38.030+0000", "modified": "2019-06-11T14:17:38.030+0000", "resources": [{"id": 1454, "mirId": "MIR:00100662", "urlPattern": "https://www.ebi.ac.uk/pride/archive/projects/{$id}", "name": "PRIDE Project at EBI", "description": "PRIDE Project at EBI", "official": true, "providerCode": "ebi", "sampleId": "PXD000440", "resourceHomeUrl": "https://www.ebi.ac.uk/pride/", "institution": {"id": 2, "name": "European Bioinformatics Institute", "homeUrl": "https://www.ebi.ac.uk", "description": "At EMBL-EBI, we make the world\u2019s public biological data freely available to the scientific community via a range of services and tools, perform basic research and provide professional training in bioinformatics. \nWe are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states.", "rorId": "https://ror.org/02catss52", "location": {"countryCode": "GB", "countryName": "United Kingdom"}}, "location": {"countryCode": "GB", "countryName": "United Kingdom"}, "deprecated": false, "deprecationDate": null}, {"id": 1455, "mirId": "MIR:00100858", "urlPattern": "https://www.omicsdi.org/dataset/pride/{$id}", "name": "PRIDE Project through OmicsDI", "description": "PRIDE Project through OmicsDI", "official": false, "providerCode": "omicsdi", "sampleId": "PXD000440", "resourceHomeUrl": "https://www.omicsdi.org/", "institution": {"id": 2, "name": "European Bioinformatics Institute", "homeUrl": "https://www.ebi.ac.uk", "description": "At EMBL-EBI, we make the world\u2019s public biological data freely available to the scientific community via a range of services and tools, perform basic research and provide professional training in bioinformatics. \nWe are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states.", "rorId": "https://ror.org/02catss52", "location": {"countryCode": "GB", "countryName": "United Kingdom"}}, "location": {"countryCode": "GB", "countryName": "United Kingdom"}, "deprecated": false, "deprecationDate": null}], "sampleId": "PXD000440", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1456, "prefix": "antibodyregistry", "mirId": "MIR:00000516", "name": "Antibody Registry", "pattern": "^\\d{6}$", "description": "The Antibody Registry provides identifiers for antibodies used in publications. It lists commercial antibodies from numerous vendors, each assigned with a unique identifier. Unlisted antibodies can be submitted by providing the catalog number and vendor information.", "created": "2019-06-11T14:17:38.379+0000", "modified": "2019-06-11T14:17:38.379+0000", "resources": [{"id": 1458, "mirId": "MIR:00100664", "urlPattern": "http://antibodyregistry.org/AB_{$id}", "name": "Antibody Registry at University of California", "description": "Antibody Registry at University of California", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "493771", "resourceHomeUrl": "http://antibodyregistry.org/", "institution": {"id": 1457, "name": "Neuroscience Information Framework, University of California, San Diego,  California", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}], "sampleId": "493771", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1459, "prefix": "mamo", "mirId": "MIR:00000517", "name": "Mathematical Modelling Ontology", "pattern": "^MAMO_\\d{7}$", "description": "The Mathematical Modelling Ontology (MAMO) is a classification of the types of mathematical models used mostly in the life sciences, their variables, relationships and other relevant features.", "created": "2019-06-11T14:17:38.625+0000", "modified": "2019-06-11T14:17:38.625+0000", "resources": [{"id": 1460, "mirId": "MIR:00100665", "urlPattern": "http://bioportal.bioontology.org/ontologies/MAMO/?p=classes&conceptid=http://identifiers.org/mamo/{$id}", "name": "MAMO through BioPortal", "description": "MAMO through BioPortal", "official": false, "providerCode": "bptl", "sampleId": "MAMO_0000026", "resourceHomeUrl": "http://bioportal.bioontology.org/ontologies/MAMO", "institution": {"id": 5, "name": "National Center for Biomedical Ontology, Stanford", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}, {"id": 1461, "mirId": "MIR:00100758", "urlPattern": "https://www.ebi.ac.uk/ols/ontologies/mamo/terms?short_form={$id}", "name": "MaMO through OLS", "description": "MaMO through OLS", "official": false, "providerCode": "ols", "sampleId": "MAMO_0000026", "resourceHomeUrl": "https://www.ebi.ac.uk/ols/ontologies/mamo", "institution": {"id": 2, "name": "European Bioinformatics Institute", "homeUrl": "https://www.ebi.ac.uk", "description": "At EMBL-EBI, we make the world\u2019s public biological data freely available to the scientific community via a range of services and tools, perform basic research and provide professional training in bioinformatics. \nWe are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states.", "rorId": "https://ror.org/02catss52", "location": {"countryCode": "GB", "countryName": "United Kingdom"}}, "location": {"countryCode": "GB", "countryName": "United Kingdom"}, "deprecated": false, "deprecationDate": null}], "sampleId": "MAMO_0000026", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1462, "prefix": "eo", "mirId": "MIR:00000518", "name": "Plant Environment Ontology", "pattern": "^(P)?EO\\:\\d{7}$", "description": "The Plant Environment Ontology is a set of standardized controlled vocabularies to describe various types of treatments given to an individual plant / a population or a cultured tissue and/or cell type sample to evaluate the response on its exposure. It also includes the study types, where the terms can be used to identify the growth study facility. Each growth facility such as field study, growth chamber, green house etc is a environment on its own it may also involve instances of biotic and abiotic environments as supplemental treatments used in these studies.", "created": "2019-06-11T14:17:38.985+0000", "modified": "2019-06-11T14:17:38.985+0000", "resources": [{"id": 1463, "mirId": "MIR:00100667", "urlPattern": "http://archive.gramene.org/db/ontology/search?query=EO:{$id}", "name": "Plant Environment Ontology through Gramene", "description": "Plant Environment Ontology through Gramene", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "0007404", "resourceHomeUrl": "http://archive.gramene.org/db/ontology/search_term?id=EO:0007359", "institution": {"id": 556, "name": "Cold Spring Harbor Laboratory, New York", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}, {"id": 1464, "mirId": "MIR:00100668", "urlPattern": "http://purl.bioontology.org/ontology/PECO/EO:{$id}", "name": "Plant Environment Ontology through BioPortal", "description": "Plant Environment Ontology through BioPortal", "official": false, "providerCode": "bptl", "sampleId": "0007404", "resourceHomeUrl": "http://bioportal.bioontology.org/ontologies/PECO", "institution": {"id": 5, "name": "National Center for Biomedical Ontology, Stanford", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}, {"id": 1465, "mirId": "MIR:00100669", "urlPattern": "https://www.ebi.ac.uk/ols/ontologies/eo/terms?obo_id=EO:{$id}", "name": "Plant Environment Ontology through OLS", "description": "Plant Environment Ontology through OLS", "official": false, "providerCode": "ols", "sampleId": "0007404", "resourceHomeUrl": "https://www.ebi.ac.uk/ols/ontologies/eo", "institution": {"id": 2, "name": "European Bioinformatics Institute", "homeUrl": "https://www.ebi.ac.uk", "description": "At EMBL-EBI, we make the world\u2019s public biological data freely available to the scientific community via a range of services and tools, perform basic research and provide professional training in bioinformatics. \nWe are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states.", "rorId": "https://ror.org/02catss52", "location": {"countryCode": "GB", "countryName": "United Kingdom"}}, "location": {"countryCode": "GB", "countryName": "United Kingdom"}, "deprecated": false, "deprecationDate": null}], "sampleId": "0007404", "namespaceEmbeddedInLui": true, "deprecated": false, "deprecationDate": null}, {"id": 1466, "prefix": "idot", "mirId": "MIR:00000519", "name": "Identifiers.org Terms", "pattern": "^[A-Za-z]+$", "description": "Identifiers.org Terms (idot) is an RDF vocabulary providing useful terms for describing datasets.", "created": "2019-06-11T14:17:39.487+0000", "modified": "2019-06-11T14:17:39.487+0000", "resources": [{"id": 1467, "mirId": "MIR:00100670", "urlPattern": "https://biomodels.net/vocab/idot.rdf#{$id}", "name": "IdoT via biomodels.net", "description": "IdoT via biomodels.net", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "identifierPattern", "resourceHomeUrl": "https://identifiers.org/", "institution": {"id": 2, "name": "European Bioinformatics Institute", "homeUrl": "https://www.ebi.ac.uk", "description": "At EMBL-EBI, we make the world\u2019s public biological data freely available to the scientific community via a range of services and tools, perform basic research and provide professional training in bioinformatics. \nWe are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states.", "rorId": "https://ror.org/02catss52", "location": {"countryCode": "GB", "countryName": "United Kingdom"}}, "location": {"countryCode": "GB", "countryName": "United Kingdom"}, "deprecated": false, "deprecationDate": null}], "sampleId": "identifierPattern", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1470, "prefix": "yeastintron", "mirId": "MIR:00000521", "name": "Yeast Intron Database v4.3", "pattern": "^[A-Z0-9]+$", "description": "The YEast Intron Database (version 4.3) contains information on the spliceosomal introns of the yeast Saccharomyces cerevisiae. It includes expression data that relates to the efficiency of splicing relative to other processes in strains of yeast lacking nonessential splicing factors. The data are displayed on each intron page. This is an updated version of the previous dataset, which can be accessed through [MIR:00000460].", "created": "2019-06-11T14:17:39.906+0000", "modified": "2019-06-11T14:17:39.906+0000", "resources": [{"id": 1471, "mirId": "MIR:00100673", "urlPattern": "http://intron.ucsc.edu/cgi-bin/yeast4.3/intronreports.pl?outputformat=full&amp;orfName={$id}", "name": "Yeast Intron Database version 4.3 at Baskin School of Engineering", "description": "Yeast Intron Database version 4.3 at Baskin School of Engineering", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "SNR17A", "resourceHomeUrl": "http://intron.ucsc.edu/yeast4.3/", "institution": {"id": 1319, "name": "University of California, Santa Cruz", "homeUrl": "https://www.ucsc.edu", "description": "UC Santa Cruz opened in 1965 with 650 students. During the 2018-2019 academic year, 16,983 undergraduate and 1,822 graduate students were enrolled.\n", "rorId": "https://ror.org/03s65by71", "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}], "sampleId": "SNR17A", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1472, "prefix": "ardb", "mirId": "MIR:00000522", "name": "Antibiotic Resistance Genes Database", "pattern": "^[A-Z_]{3}[0-9]{4,}$", "description": "The Antibiotic Resistance Genes Database (ARDB) is a manually curated database which characterises genes involved in antibiotic resistance. Each gene and resistance type is annotated with information, including resistance profile, mechanism of action, ontology, COG and CDD annotations, as well as external links to sequence and protein databases. This collection references resistance genes.", "created": "2019-06-11T14:17:40.104+0000", "modified": "2019-06-11T14:17:40.104+0000", "resources": [{"id": 1474, "mirId": "MIR:00100678", "urlPattern": "http://ardb.cbcb.umd.edu/cgi/search.cgi?db=L&amp;field=ni&amp;term={$id}", "name": "ARDB at University of Maryland", "description": "ARDB at University of Maryland", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "CAE46076", "resourceHomeUrl": "http://ardb.cbcb.umd.edu/", "institution": {"id": 1473, "name": "Center for Bioinformatics and Computational Biology, University of Maryland, Maryland", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}], "sampleId": "CAE46076", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1475, "prefix": "proteomicsdb.protein", "mirId": "MIR:00000524", "name": "ProteomicsDB Protein", "pattern": "^\\d+$", "description": "ProteomicsDB is an effort dedicated to expedite the identification of the human proteome and its use across the scientific community. This human proteome data is assembled primarily using information  from liquid chromatography tandem-mass-spectrometry (LC-MS/MS) experiments involving human tissues, cell lines and body fluids. Information is accessible for individual proteins, or on the basis of protein coverage on the encoding chromosome, and for peptide components of a protein. This collection provides access to individual proteins.", "created": "2019-06-11T14:17:40.344+0000", "modified": "2019-06-11T14:17:40.344+0000", "resources": [{"id": 1477, "mirId": "MIR:00100680", "urlPattern": "https://www.proteomicsdb.org/#human/proteinDetails/{$id}/summary", "name": "Proteomics DB Protein at Center for Integrated Protein Science", "description": "Proteomics DB Protein at Center for Integrated Protein Science", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "53504", "resourceHomeUrl": "https://www.proteomicsdb.org/#human", "institution": {"id": 1476, "name": "Center for Integrated Protein Science, Munich,", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "DE", "countryName": "Germany"}}, "location": {"countryCode": "DE", "countryName": "Germany"}, "deprecated": false, "deprecationDate": null}], "sampleId": "53504", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1478, "prefix": "proteomicsdb.peptide", "mirId": "MIR:00000525", "name": "ProteomicsDB Peptide", "pattern": "^\\d+$", "description": "ProteomicsDB is an effort dedicated to expedite the identification of the human proteome and its use across the scientific community. This human proteome data is assembled primarily using information from liquid chromatography tandem-mass-spectrometry (LC-MS/MS) experiments involving human tissues, cell lines and body fluids. Information is accessible for individual proteins, or on the basis of protein coverage on the encoding chromosome, and for peptide components of a protein. This collection provides access to the peptides identified for a given protein.", "created": "2019-06-11T14:17:40.583+0000", "modified": "2019-06-11T14:17:40.583+0000", "resources": [{"id": 1480, "mirId": "MIR:00100681", "urlPattern": "https://www.proteomicsdb.org/#human/proteinDetails/{$id}/peptides/", "name": "Proteomics DB Peptide at Center for Integrated Protein Science", "description": "Proteomics DB Peptide at Center for Integrated Protein Science", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "53504", "resourceHomeUrl": "https://www.proteomicsdb.org/#peptideSearch", "institution": {"id": 1479, "name": "Center for Integrated Protein Science, Munich", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "DE", "countryName": "Germany"}}, "location": {"countryCode": "DE", "countryName": "Germany"}, "deprecated": false, "deprecationDate": null}], "sampleId": "53504", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1481, "prefix": "hpm.protein", "mirId": "MIR:00000526", "name": "Human Proteome Map Protein", "pattern": "^\\d+$", "description": "The Human Proteome Map (HPM) portal integrates the peptide sequencing result from the draft map of the human proteome project. The project was based on LC-MS/MS by utilizing of high resolution and high accuracy Fourier transform mass spectrometry. The HPM contains direct evidence of translation of a number of protein products derived from human genes, based on peptide identifications of multiple organs/tissues and cell types from individuals with clinically defined healthy tissues. The HPM portal provides data on individual proteins, as well as on individual peptide spectra. This collection references proteins.", "created": "2019-06-11T14:17:40.825+0000", "modified": "2019-06-11T14:17:40.825+0000", "resources": [{"id": 1482, "mirId": "MIR:00100682", "urlPattern": "http://www.humanproteomemap.org/protein.php?hpm_id={$id}", "name": "Human Proteome Map Protein at Institute of Bioinformatics (Bangalore)", "description": "Human Proteome Map Protein at Institute of Bioinformatics (Bangalore)", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "1968", "resourceHomeUrl": "http://www.humanproteomemap.org/index.php", "institution": {"id": 1087, "name": "Institute of Bioinformatics, International Tech Park, Bangalore", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "IN", "countryName": "India"}}, "location": {"countryCode": "IN", "countryName": "India"}, "deprecated": false, "deprecationDate": null}], "sampleId": "1968", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1483, "prefix": "hpm.peptide", "mirId": "MIR:00000527", "name": "Human Proteome Map Peptide", "pattern": "^\\d+$", "description": "The Human Proteome Map (HPM) portal integrates the peptide sequencing result from the draft map of the human proteome project. The project was based on LC-MS/MS by utilizing of high resolution and high accuracy Fourier transform mass spectrometry. The HPM contains direct evidence of translation of a number of protein products derived from human genes, based on peptide identifications of multiple organs/tissues and cell types from individuals with clinically defined healthy tissues. The HPM portal provides data on individual proteins, as well as on individual peptide spectra. This collection references individual peptides through spectra.", "created": "2019-06-11T14:17:41.032+0000", "modified": "2019-06-11T14:17:41.032+0000", "resources": [{"id": 1484, "mirId": "MIR:00100683", "urlPattern": "http://www.humanproteomemap.org/spectrum.php?pep_id={$id}", "name": "Human Proteome Map Peptide at Institute of Bioinformatics (Bangalore)", "description": "Human Proteome Map Peptide at Institute of Bioinformatics (Bangalore)", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "9606117", "resourceHomeUrl": "http://www.humanproteomemap.org/index.php", "institution": {"id": 1087, "name": "Institute of Bioinformatics, International Tech Park, Bangalore", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "IN", "countryName": "India"}}, "location": {"countryCode": "IN", "countryName": "India"}, "deprecated": false, "deprecationDate": null}], "sampleId": "9606117", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1485, "prefix": "drugbankv4.target", "mirId": "MIR:00000528", "name": "DrugBank Target v4", "pattern": "^BE\\d{7}$", "description": "The DrugBank database is a bioinformatics and chemoinformatics resource that combines detailed drug (i.e. chemical, pharmacological and pharmaceutical) data with comprehensive drug target (i.e. sequence, structure, and pathway) information. This collection references target information from version 4 of the database.", "created": "2019-06-11T14:17:41.273+0000", "modified": "2019-06-11T14:17:41.273+0000", "resources": [{"id": 1487, "mirId": "MIR:00100687", "urlPattern": "http://www.drugbank.ca/biodb/bio_entities/{$id}", "name": "DrugBank Target information version 4", "description": "DrugBank Target information version 4", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "BE0000048", "resourceHomeUrl": "http://www.drugbank.ca/targets", "institution": {"id": 1486, "name": "Departments of Computing Science, Biological Sciences, University of Alberta", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "CA", "countryName": "Canada"}}, "location": {"countryCode": "CA", "countryName": "Canada"}, "deprecated": false, "deprecationDate": null}], "sampleId": "BE0000048", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1488, "prefix": "zinc", "mirId": "MIR:00000529", "name": "ZINC", "pattern": "^(ZINC)?\\d+$", "description": "ZINC is a free public resource for ligand discovery. The database contains over twenty million commercially available molecules in biologically relevant representations that may be downloaded in popular ready-to-dock formats and subsets. The Web site enables searches by structure, biological activity, physical property, vendor, catalog number, name, and CAS number.", "created": "2019-06-11T14:17:41.559+0000", "modified": "2019-06-11T14:17:41.559+0000", "resources": [{"id": 1490, "mirId": "MIR:00100688", "urlPattern": "http://zinc15.docking.org/substances/{$id}", "name": "ZINC at University of California (San Francisco)", "description": "ZINC at University of California (San Francisco)", "official": true, "providerCode": "CURATOR_REVIEW", "sampleId": "ZINC1084", "resourceHomeUrl": "http://zinc15.docking.org/", "institution": {"id": 1489, "name": "Shoichet Laboratory, Department of Pharmaceutical Chemistry, University of California, San Francisco", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}], "sampleId": "ZINC1084", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1491, "prefix": "foodb.compound", "mirId": "MIR:00000530", "name": "FooDB Compound", "pattern": "^FDB\\d+$", "description": "FooDB is resource on food and its constituent compounds. It includes data on the compound\u2019s nomenclature, its description, information on its structure, chemical class, its physico-chemical data, its food source(s), its color, its aroma, its taste, its physiological effect, presumptive health effects (from published studies), and concentrations in various foods. This collection references compounds.", "created": "2019-06-11T14:17:41.796+0000", "modified": "2019-06-11T14:17:41.796+0000", "resources": [{"id": 1492, "mirId": "MIR:00100689", "urlPattern": "http://foodb.ca/compounds/{$id}", "name": "FooDB database of food additives at University of Alberta", "description": "FooDB database of food additives at University of Alberta", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "FDB002100", "resourceHomeUrl": "http://foodb.ca/foods", "institution": {"id": 334, "name": "University of Alberta", "homeUrl": "https://www.ualberta.ca", "description": "The University of Alberta in Edmonton is one of Canada's top teaching and research universities, with an international reputation for excellence across the humanities, sciences, creative arts, business, engineering and health sciences.", "rorId": "https://ror.org/0160cpw27", "location": {"countryCode": "CA", "countryName": "Canada"}}, "location": {"countryCode": "CA", "countryName": "Canada"}, "deprecated": false, "deprecationDate": null}], "sampleId": "FDB002100", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1493, "prefix": "unii", "mirId": "MIR:00000531", "name": "UNII", "pattern": "^[A-Z0-9]+$", "description": "The purpose of the joint FDA/USP Substance Registration System (SRS) is to support health information technology initiatives by generating unique ingredient identifiers (UNIIs) for substances in drugs, biologics, foods, and devices. The UNII is a non- proprietary, free, unique, unambiguous, non semantic, alphanumeric identifier based on a substance\u2019s molecular structure and/or descriptive information.", "created": "2019-06-11T14:17:41.988+0000", "modified": "2019-06-11T14:17:41.988+0000", "resources": [{"id": 1494, "mirId": "MIR:00100690", "urlPattern": "http://fdasis.nlm.nih.gov/srs/srsdirect.jsp?regno={$id}", "name": "UNII at U.S. Food and Drug Administration", "description": "UNII at U.S. Food and Drug Administration", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "3G6A5W338E", "resourceHomeUrl": "http://fdasis.nlm.nih.gov/srs/", "institution": {"id": 1238, "name": "U.S. Food and Drug Administration, Maryland", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}, {"id": 3441, "mirId": "MIR:00000990", "urlPattern": "https://precision.fda.gov/uniisearch/srs/unii/{$id}", "name": "United States Food and Drug Administration", "description": "Organization information obtained from ROR API using ROR ID 'https://ror.org/034xvzb47' with Wikidata IDs [Q204711], and ISNI IDs [0000 0001 2243 3366]", "official": true, "providerCode": "fda", "sampleId": "3G6A5W338E", "resourceHomeUrl": "https://precision.fda.gov/uniisearch", "institution": {"id": 3440, "name": "United States Food and Drug Administration", "homeUrl": "https://www.fda.gov/", "description": "Organization information obtained from ROR API using ROR ID 'https://ror.org/034xvzb47' with Wikidata IDs [Q204711], and ISNI IDs [0000 0001 2243 3366]", "rorId": null, "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}], "sampleId": "3G6A5W338E", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1495, "prefix": "orphanet.ordo", "mirId": "MIR:00000532", "name": "Orphanet Rare Disease Ontology", "pattern": "^Orphanet(_|:)C?\\d+$", "description": "The Orphanet Rare Disease ontology (ORDO) is a structured vocabulary for rare diseases, capturing relationships between diseases, genes and other relevant features which will form a useful resource for the computational analysis of rare diseases.\r\nIt integrates a nosology (classification of rare diseases), relationships (gene-disease relations, epiemological data) and connections with other terminologies (MeSH, UMLS, MedDRA), databases (OMIM, UniProtKB, HGNC, ensembl, Reactome, IUPHAR, Geantlas) and classifications (ICD10).", "created": "2019-06-11T14:17:42.194+0000", "modified": "2019-06-11T14:17:42.194+0000", "resources": [{"id": 1496, "mirId": "MIR:00100705", "urlPattern": "https://www.ebi.ac.uk/ols/ontologies/ordo/terms?short_form={$id}", "name": "ORDO via OLS", "description": "ORDO via OLS", "official": true, "providerCode": "ols", "sampleId": "Orphanet_C023", "resourceHomeUrl": "https://www.ebi.ac.uk/ols/ontologies/ordo", "institution": {"id": 2, "name": "European Bioinformatics Institute", "homeUrl": "https://www.ebi.ac.uk", "description": "At EMBL-EBI, we make the world\u2019s public biological data freely available to the scientific community via a range of services and tools, perform basic research and provide professional training in bioinformatics. \nWe are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states.", "rorId": "https://ror.org/02catss52", "location": {"countryCode": "GB", "countryName": "United Kingdom"}}, "location": {"countryCode": "GB", "countryName": "United Kingdom"}, "deprecated": false, "deprecationDate": null}], "sampleId": "Orphanet_C023", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1497, "prefix": "psipar", "mirId": "MIR:00000533", "name": "Protein Affinity Reagents", "pattern": "^PAR:\\d+$", "description": "Protein Affinity Reagents (PSI-PAR) provides a structured controlled vocabulary for the annotation of experiments concerned with interactions, and interactor production methods. PAR is developed by the HUPO Proteomics Standards Initiative and contains the majority of the terms from the PSI-MI controlled vocabular, as well as additional terms.", "created": "2019-06-11T14:17:42.461+0000", "modified": "2019-06-11T14:17:42.461+0000", "resources": [{"id": 1498, "mirId": "MIR:00100709", "urlPattern": "https://www.ebi.ac.uk/ontology-lookup/?termId={$id}", "name": "Protein Affinity Reagents through OLS", "description": "Protein Affinity Reagents through OLS", "official": false, "providerCode": "ols", "sampleId": "PAR:0116", "resourceHomeUrl": "https://www.ebi.ac.uk/ontology-lookup/browse.do?ontName=PAR", "institution": {"id": 2, "name": "European Bioinformatics Institute", "homeUrl": "https://www.ebi.ac.uk", "description": "At EMBL-EBI, we make the world\u2019s public biological data freely available to the scientific community via a range of services and tools, perform basic research and provide professional training in bioinformatics. \nWe are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states.", "rorId": "https://ror.org/02catss52", "location": {"countryCode": "GB", "countryName": "United Kingdom"}}, "location": {"countryCode": "GB", "countryName": "United Kingdom"}, "deprecated": false, "deprecationDate": null}], "sampleId": "PAR:0116", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1499, "prefix": "clinvar.record", "mirId": "MIR:00000534", "name": "ClinVar Record", "pattern": "^RCV\\d+(\\.\\d+)?$", "description": "ClinVar archives reports of relationships among medically important variants and phenotypes. It records human variation, interpretations of the relationship specific variations to human health, and supporting evidence for each interpretation. Each ClinVar record (RCV identifier) represents an aggregated view of interpretations of  the same variation and condition from one or more submitters. Submissions for individual variation/phenotype combinations (SCV identifier) are also collected and made available separately. This collection references the Record Report, based on RCV accession.", "created": "2019-06-11T14:17:42.685+0000", "modified": "2019-06-11T14:17:42.685+0000", "resources": [{"id": 1501, "mirId": "MIR:00100710", "urlPattern": "http://www.ncbi.nlm.nih.gov/clinvar/{$id}/", "name": "ClinVar Record at NCBI", "description": "ClinVar Record at NCBI", "official": false, "providerCode": "ncbi", "sampleId": "RCV000033555.3", "resourceHomeUrl": "http://www.ncbi.nlm.nih.gov/clinvar/", "institution": {"id": 26, "name": "National Center for Biotechnology Information", "homeUrl": "https://www.ncbi.nlm.nih.gov/", "description": "The National Center for Biotechnology Information advances science and health by providing access to biomedical and genomic information.", "rorId": "https://ror.org/02meqm098", "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}], "sampleId": "RCV000033555.3", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1502, "prefix": "mgnify.proj", "mirId": "MIR:00000535", "name": "MGnify Project", "pattern": "^[A-Z]+[0-9]+$", "description": "MGnify is a resource for the analysis and archiving of microbiome data to help determine the taxonomic diversity and functional & metabolic potential of environmental samples. Users can submit their own data for analysis or freely browse all of the analysed public datasets held within the repository. In addition, users can request analysis of any appropriate dataset within the European Nucleotide Archive (ENA). User-submitted or ENA-derived datasets can also be assembled on request, prior to analysis.", "created": "2019-06-11T14:17:42.938+0000", "modified": "2019-06-11T14:17:42.938+0000", "resources": [{"id": 1503, "mirId": "MIR:00100711", "urlPattern": "https://www.ebi.ac.uk/metagenomics/projects/{$id}", "name": "MGnify Project", "description": "MGnify Project", "official": false, "providerCode": "ebi", "sampleId": "ERP004492", "resourceHomeUrl": "https://www.ebi.ac.uk/metagenomics", "institution": {"id": 2, "name": "European Bioinformatics Institute", "homeUrl": "https://www.ebi.ac.uk", "description": "At EMBL-EBI, we make the world\u2019s public biological data freely available to the scientific community via a range of services and tools, perform basic research and provide professional training in bioinformatics. \nWe are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states.", "rorId": "https://ror.org/02catss52", "location": {"countryCode": "GB", "countryName": "United Kingdom"}}, "location": {"countryCode": "GB", "countryName": "United Kingdom"}, "deprecated": false, "deprecationDate": null}], "sampleId": "ERP004492", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1504, "prefix": "euclinicaltrials", "mirId": "MIR:00000536", "name": "EU Clinical Trials", "pattern": "^\\d{4}\\-\\d{6}\\-\\d{2}$", "description": "The EU Clinical Trials Register contains information on clinical trials conducted in the European Union (EU), or the European Economic Area (EEA) which started after 1 May 2004.\r\nIt also includes trials conducted outside these areas if they form part of a paediatric investigation plan (PIP), or are sponsored by a marketing authorisation holder, and involve the use of a medicine in the paediatric population.", "created": "2019-06-11T14:17:43.129+0000", "modified": "2019-06-11T14:17:43.129+0000", "resources": [{"id": 1506, "mirId": "MIR:00100712", "urlPattern": "https://www.clinicaltrialsregister.eu/ctr-search/search?query={$id}", "name": "EU Clinical Trials at  European Medicines Agency", "description": "EU Clinical Trials at  European Medicines Agency", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "2008-005144-16", "resourceHomeUrl": "https://www.clinicaltrialsregister.eu/", "institution": {"id": 1505, "name": "European Medicines Agency, London", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "GB", "countryName": "United Kingdom"}}, "location": {"countryCode": "GB", "countryName": "United Kingdom"}, "deprecated": false, "deprecationDate": null}], "sampleId": "2008-005144-16", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1507, "prefix": "google.patent", "mirId": "MIR:00000537", "name": "Google Patents", "pattern": "^[A-Z]{2}\\d+([A-Z])?$", "description": "Google Patents covers the entire collection of granted patents and published patent applications from the USPTO, EPO, and WIPO. 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Items represent topics, for which basic information is stored that identifies each topic.", "created": "2019-06-11T14:17:46.087+0000", "modified": "2020-11-30T14:15:44.647+0000", "resources": [{"id": 1538, "mirId": "MIR:00100726", "urlPattern": "http://www.wikidata.org/entity/{$id}", "name": "Wikidata at Wikimedia Foundation", "description": "Wikidata at Wikimedia Foundation", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "Q2207226", "resourceHomeUrl": "https://www.wikidata.org/", "institution": {"id": 1111, "name": "Wikimedia Foundation, San Francisco, California", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}], "sampleId": "Q2207226", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1557, "prefix": "bigg.reaction", "mirId": "MIR:00000557", "name": "BiGG Reaction", "pattern": "^[a-z_A-Z0-9]+$", "description": "BiGG is a knowledgebase of Biochemically, Genetically and Genomically structured genome-scale metabolic network reconstructions. It more published genome-scale metabolic networks into a single database with a set of stardized identifiers called BiGG IDs. Genes in the BiGG models are mapped to NCBI genome annotations, and metabolites are linked to many external databases (KEGG, PubChem, and many more). This collection references reactions.", "created": "2019-06-11T14:17:48.059+0000", "modified": "2019-06-11T14:17:48.059+0000", "resources": [{"id": 1558, "mirId": "MIR:00100734", "urlPattern": "http://bigg.ucsd.edu/models/universal/reactions/{$id}", "name": "BiGG Reaction at University of California", "description": "BiGG Reaction at University of California", "official": false, "providerCode": "ucsd", "sampleId": "13GS", "resourceHomeUrl": "http://bigg.ucsd.edu/universal/reactions", "institution": {"id": 190, "name": "University of California, San Diego", "homeUrl": "https://ucsd.edu/", "description": "is a public research university in San Diego, California.\nEstablished in 1960 near the pre-existing Scripps Institution of Oceanography, UC San Diego is the seventh-oldest of the 10 University of California campuses and offers over 200 undergraduate and graduate degree programs, enrolling approximately 30,000 undergraduate and 8,500 graduate students.", "rorId": "https://ror.org/0168r3w48", "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}], "sampleId": "13GS", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1561, "prefix": "umls", "mirId": "MIR:00000559", "name": "UMLS", "pattern": "^C\\d+$", "description": "The Unified Medical Language System is a repository of biomedical vocabularies. Vocabularies integrated in the UMLS Metathesaurus include the NCBI taxonomy, Gene Ontology, the Medical Subject Headings (MeSH), OMIM and the Digital Anatomist Symbolic Knowledge Base. UMLS concepts are not only inter-related, but may also be linked to external resources such as GenBank.", "created": "2019-06-11T14:17:48.502+0000", "modified": "2019-06-11T14:17:48.502+0000", "resources": [{"id": 1562, "mirId": "MIR:00100736", "urlPattern": "http://linkedlifedata.com/resource/umls/id/{$id}", "name": "Unified Medical Language System at LinkedLifeData", "description": "Unified Medical Language System at LinkedLifeData", "official": true, "providerCode": "CURATOR_REVIEW", "sampleId": "C0021390", "resourceHomeUrl": "http://linkedlifedata.com/", "institution": {"id": 63, "name": "Linkedlifedata, Ontotext, Sofia", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "BG", "countryName": "Bulgaria"}}, "location": {"countryCode": "BG", "countryName": "Bulgaria"}, "deprecated": false, "deprecationDate": null}], "sampleId": "C0021390", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1567, "prefix": "mirtarbase", "mirId": "MIR:00000562", "name": "miRTarBase", "pattern": "^MIRT\\d{6}$", "description": "miRTarBase is a database of miRNA-target interactions (MTIs), collected manually from relevant literature, following Natural Language Processing of the text to identify research articles related to functional studies of miRNAs. Generally, the collected MTIs are validated experimentally by reporter assay, western blot, microarray and next-generation sequencing experiments.", "created": "2019-06-11T14:17:49.171+0000", "modified": "2019-06-11T14:17:49.171+0000", "resources": [{"id": 1569, "mirId": "MIR:00100739", "urlPattern": "http://mirtarbase.mbc.nctu.edu.tw/php/detail.php?mirtid={$id}", "name": "miRTarBase at National Chiao Tung University", "description": "miRTarBase at National Chiao Tung University", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "MIRT000002", "resourceHomeUrl": "http://mirtarbase.mbc.nctu.edu.tw/", "institution": {"id": 1568, "name": "Institute of Bioinformatics and Systems Biology, National Chiao Tung University, Hsinchu", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "TW", "countryName": "Taiwan, Province of China"}}, "location": {"countryCode": "TW", "countryName": "Taiwan, Province of China"}, "deprecated": false, "deprecationDate": null}], "sampleId": "MIRT000002", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1570, "prefix": "meddra", "mirId": "MIR:00000563", "name": "MedDRA", "pattern": "^\\d+$", "description": "The Medical Dictionary for Regulatory Activities (MedDRA) was developed by the International Council for Harmonisation of Technical Requirements for Registration of Pharmaceuticals for Human Use (ICH)to provide a standardised medical terminology to facilitate sharing of regulatory information internationally for medical products used by humans. It is used within regulatory processes, safety monitoring, as well as for marketing activities. Products covered by the scope of MedDRA include pharmaceuticals, biologics, vaccines and drug-device combination products. The MedDRA dictionary is organized by System Organ Class (SOC), divided into High-Level Group Terms (HLGT), High-Level Terms (HLT), Preferred Terms (PT) and finally into Lowest Level Terms (LLT).", "created": "2019-06-11T14:17:49.428+0000", "modified": "2019-06-11T14:17:49.428+0000", "resources": [{"id": 1571, "mirId": "MIR:00100740", "urlPattern": "http://purl.bioontology.org/ontology/MEDDRA/{$id}", "name": "MedDRA through BioPortal", "description": "MedDRA through BioPortal", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "10015919", "resourceHomeUrl": "http://bioportal.bioontology.org/ontologies/MEDDRA", "institution": {"id": 5, "name": "National Center for Biomedical Ontology, Stanford", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}], "sampleId": "10015919", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1572, "prefix": "dashr", "mirId": "MIR:00000564", "name": "DASHR", "pattern": "^(hsa-(let|mir)-\\w+(-\\w+)?)|(piR-\\d+)|(chr\\w+.tRNA\\d+-\\w+)|(chr\\w+.tRNA\\d+-\\w+-tRF\\d)|((SNORD|SNORA|ACA|HBII|HBI|U)(-)?\\w+)|(HY\\d\\+(-L\\d+)?)|((LSU|SSU|5S)(-rRNA_Hsa)?(-L\\d+)?)$", "description": "DASHR reports the annotation, expression and evidence for specific RNA processing (cleavage specificity scores/entropy) of human sncRNA genes, precursor and mature sncRNA products across different human tissues and cell types. DASHR integrates information from multiple existing annotation resources for small non-coding RNAs, including microRNAs (miRNAs), Piwi-interacting (piRNAs), small nuclear (snRNAs), nucleolar (snoRNAs), cytoplasmic (scRNAs), transfer (tRNAs), tRNA fragments (tRFs), and ribosomal RNAs (rRNAs). These datasets were obtained from non-diseased human tissues and cell types and were generated for studying or profiling small non-coding RNAs. This collection references RNA records.", "created": "2019-06-11T14:17:49.634+0000", "modified": "2019-06-11T14:17:49.634+0000", "resources": [{"id": 1574, "mirId": "MIR:00100741", "urlPattern": "http://lisanwanglab.org/DASHR/entry/{$id}", "name": "DASHR at  University of Pennsylvania", "description": "DASHR at  University of Pennsylvania", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "hsa-mir-200a", "resourceHomeUrl": "http://lisanwanglab.org/DASHR/", "institution": {"id": 1573, "name": "Department of Pathology and Laboratory Medicine, University of Pennsylvania, Philadelphia", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}], "sampleId": "hsa-mir-200a", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1575, "prefix": "dashr.expression", "mirId": "MIR:00000565", "name": "DASHR expression", "pattern": "^(hsa-(let|mir)-\\w+(-\\w+)?)|(piR-\\d+)|(chr\\w+.tRNA\\d+-\\w+)|(chr\\w+.tRNA\\d+-\\w+-tRF\\d)|((SNORD|SNORA|ACA|HBII|HBI|U)(-)?\\w+)|(HY\\d\\+(-L\\d+)?)|((LSU|SSU|5S)(-rRNA_Hsa)?(-L\\d+)?)$", "description": "DASHR reports the annotation, expression and evidence for specific RNA processing (cleavage specificity scores/entropy) of human sncRNA genes, precursor and mature sncRNA products across different human tissues and cell types. DASHR integrates information from multiple existing annotation resources for small non-coding RNAs, including microRNAs (miRNAs), Piwi-interacting (piRNAs), small nuclear (snRNAs), nucleolar (snoRNAs), cytoplasmic (scRNAs), transfer (tRNAs), tRNA fragments (tRFs), and ribosomal RNAs (rRNAs). These datasets were obtained from non-diseased human tissues and cell types and were generated for studying or profiling small non-coding RNAs. This collection references RNA expression.", "created": "2019-06-11T14:17:49.866+0000", "modified": "2019-06-11T14:17:49.866+0000", "resources": [{"id": 1576, "mirId": "MIR:00100742", "urlPattern": "https://dashr1.lisanwanglab.org/entry/hsa-mir-200a#{$id}#exprPerTissueTable", "name": "DASHR expression at University of Pennsylvania", "description": "DASHR expression at University of Pennsylvania", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "hsa-mir-200a", "resourceHomeUrl": "https://dashr1.lisanwanglab.org/show-expression-table.php?start=0", "institution": {"id": 1573, "name": "Department of Pathology and Laboratory Medicine, University of Pennsylvania, Philadelphia", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}], "sampleId": "hsa-mir-200a", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1577, "prefix": "splash", "mirId": "MIR:00000566", "name": "SPLASH", "pattern": "^splash\\d[A-Z-a-z0-9]-[A-Za-z0-9]+-[A-Za-z0-9]+$", "description": "The spectra hash code (SPLASH) is a unique and non-proprietary identifier for spectra, and is independent of how the spectra were acquired or processed. It can be easily calculated for a wide range of spectra, including Mass spectroscopy,  infrared spectroscopy, ultraviolet and nuclear magnetic resonance.", "created": "2019-06-11T14:17:50.083+0000", "modified": "2019-06-11T14:17:50.083+0000", "resources": [{"id": 1579, "mirId": "MIR:00100746", "urlPattern": "http://mona.fiehnlab.ucdavis.edu/#/spectra/splash/{$id}", "name": "Mass Bank of North America (MoNA)", "description": "Mass Bank of North America (MoNA)", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "splash10-0zq2000000-77302b0326a418630a84", "resourceHomeUrl": "http://mona.fiehnlab.ucdavis.edu/", "institution": {"id": 1578, "name": "University of Californai, Davis, California", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}], "sampleId": "splash10-0zq2000000-77302b0326a418630a84", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1563, "prefix": "mesh", "mirId": "MIR:00000560", "name": "MeSH", "pattern": "^(C|D)\\d{6,9}$", "description": "MeSH (Medical Subject Headings) is the National Library of Medicine's controlled vocabulary thesaurus. It consists of sets of terms naming descriptors in a hierarchical structure that permits searching at various levels of specificity. This thesaurus is used by NLM for indexing articles from biomedical journals, cataloguing of books, documents, etc.", "created": "2019-06-11T14:17:48.752+0000", "modified": "2020-04-21T17:40:51.334+0000", "resources": [{"id": 1564, "mirId": "MIR:00100737", "urlPattern": "http://id.nlm.nih.gov/mesh/{$id}", "name": "MeSH Linked Data at National Library of Medicine", "description": "MeSH Linked Data at National Library of Medicine", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "C000100", "resourceHomeUrl": "http://id.nlm.nih.gov/mesh/", "institution": {"id": 792, "name": "U.S. National Library of Medicine, National Institute of Health, Maryland", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}], "sampleId": "C000100", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1580, "prefix": "metanetx.chemical", "mirId": "MIR:00000567", "name": "MetaNetX chemical", "pattern": "^(MNXM\\d+|BIOMASS|WATER)$", "description": "MetaNetX/MNXref integrates various information from genome-scale metabolic network reconstructions such as information on reactions, metabolites and compartments. This information undergoes a reconciliation process to minimise for discrepancies between different data sources, and makes the data accessible under a common namespace. This collection references chemical or metabolic components.", "created": "2019-06-11T14:17:50.332+0000", "modified": "2021-02-26T09:36:59.253+0000", "resources": [{"id": 1582, "mirId": "MIR:00100748", "urlPattern": "https://www.metanetx.org/chem_info/{$id}", "name": "MetaNetX chemical at SIB Swiss Institute of Bioinformatics", "description": "MetaNetX chemical at SIB Swiss Institute of Bioinformatics", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "MNXM1723", "resourceHomeUrl": "https://www.metanetx.org/", "institution": {"id": 1581, "name": "Vital-IT group, SIB Swiss Institute of Bioinformatics, Lausanne", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "CH", "countryName": "Switzerland"}}, "location": {"countryCode": "CH", "countryName": "Switzerland"}, "deprecated": false, "deprecationDate": null}], "sampleId": "MNXM1723", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1583, "prefix": "metanetx.reaction", "mirId": "MIR:00000568", "name": "MetaNetX reaction", "pattern": "^(MNXR\\d+|EMPTY)$", "description": "MetaNetX/MNXref integrates various information from genome-scale metabolic network reconstructions such as information on reactions, metabolites and compartments. This information undergoes a reconciliation process to minimise for discrepancies between different data sources, and makes the data accessible under a common namespace. This collection references reactions.", "created": "2019-06-11T14:17:50.605+0000", "modified": "2021-02-26T09:43:13.847+0000", "resources": [{"id": 1584, "mirId": "MIR:00100749", "urlPattern": "https://www.metanetx.org/equa_info/{$id}", "name": "MetaNetX reaction at SIB Swiss Institute of Bioinformatics", "description": "MetaNetX reaction at SIB Swiss Institute of Bioinformatics", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "MNXR101574", "resourceHomeUrl": "https://www.metanetx.org/", "institution": {"id": 1581, "name": "Vital-IT group, SIB Swiss Institute of Bioinformatics, Lausanne", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "CH", "countryName": "Switzerland"}}, "location": {"countryCode": "CH", "countryName": "Switzerland"}, "deprecated": false, "deprecationDate": null}], "sampleId": "MNXR101574", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1565, "prefix": "emdb", "mirId": "MIR:00000561", "name": "Electron Microscopy Data Bank", "pattern": "^EMD-\\d{4,5}$", "description": "The Electron Microscopy Data Bank (EMDB) is a public repository for electron microscopy density maps of macromolecular complexes and subcellular structures. It covers a variety of techniques, including single-particle analysis, electron tomography, and electron (2D) crystallography. The EMDB map distribution format follows the CCP4 definition, which is widely recognized by software packages used by the structural biology community.", "created": "2019-06-11T14:17:48.947+0000", "modified": "2023-02-20T08:55:04.411+0000", "resources": [{"id": 1566, "mirId": "MIR:00100738", "urlPattern": "https://www.ebi.ac.uk/pdbe/entry/emdb/{$id}", "name": "EMDB at Protein Data Bank in Europe", "description": "EMDB at Protein Data Bank in Europe", "official": false, "providerCode": "ebi", "sampleId": "EMD-1001", "resourceHomeUrl": "https://www.ebi.ac.uk/pdbe/emdb/", "institution": {"id": 2, "name": "European Bioinformatics Institute", "homeUrl": "https://www.ebi.ac.uk", "description": "At EMBL-EBI, we make the world\u2019s public biological data freely available to the scientific community via a range of services and tools, perform basic research and provide professional training in bioinformatics. \nWe are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states.", "rorId": "https://ror.org/02catss52", "location": {"countryCode": "GB", "countryName": "United Kingdom"}}, "location": {"countryCode": "GB", "countryName": "United Kingdom"}, "deprecated": false, "deprecationDate": null}], "sampleId": "EMD-1001", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1587, "prefix": "unipathway.reaction", "mirId": "MIR:00000570", "name": "UniPathway Reaction", "pattern": "^UCR\\d{5}$", "description": "UniPathway is a manually curated resource of enzyme-catalyzed and spontaneous chemical reactions. It provides a hierarchical representation of metabolic pathways and a controlled vocabulary for pathway annotation in UniProtKB. UniPathway data are cross-linked to existing metabolic resources such as ChEBI/Rhea, KEGG and MetaCyc. This collection references individual reactions.", "created": "2019-06-11T14:17:51.017+0000", "modified": "2019-06-11T14:17:51.017+0000", "resources": [{"id": 1588, "mirId": "MIR:00100752", "urlPattern": "http://www.grenoble.prabi.fr/obiwarehouse/unipathway/ucr?upid={$id}", "name": "UniPathway Reaction at Swiss Institute of Bioinformatics (SIB)", "description": "UniPathway Reaction at Swiss Institute of Bioinformatics (SIB)", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "UCR00226", "resourceHomeUrl": "http://www.grenoble.prabi.fr/obiwarehouse/unipathway", "institution": {"id": 1730, "name": "SIB Swiss Institute of Bioinformatics", "homeUrl": "https://www.sib.swiss", "description": "SIB provides bioinformatics services and resources for scientists and clinicians from academia and industry in Switzerland and worldwide.", "rorId": "https://ror.org/002n09z45", "location": {"countryCode": "CH", "countryName": "Switzerland"}}, "location": {"countryCode": "CH", "countryName": "Switzerland"}, "deprecated": true, "deprecationDate": "2019-10-01T12:11:20.049+0000"}], "sampleId": "UCR00226", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1589, "prefix": "hp", "mirId": "MIR:00000571", "name": "Human Phenotype Ontology", "pattern": "^HP:\\d{7}$", "description": "The Human Phenotype Ontology (HPO) aims to provide a standardized vocabulary of phenotypic abnormalities encountered in human disease. Each term in the HPO describes a phenotypic abnormality, such as atrial septal defect. The HPO is currently being developed using the medical literature, Orphanet, DECIPHER, and OMIM.", "created": "2019-06-11T14:17:51.237+0000", "modified": "2019-06-11T14:17:51.237+0000", "resources": [{"id": 1592, "mirId": "MIR:00100754", "urlPattern": "https://www.ebi.ac.uk/ols/ontologies/hp/terms?obo_id=HP:{$id}", "name": "Human Phenotype Ontology through OLS", "description": "Human Phenotype Ontology through OLS", "official": false, "providerCode": "ols", "sampleId": "0000118", "resourceHomeUrl": "https://www.ebi.ac.uk/ols/ontologies/hp", "institution": {"id": 2, "name": "European Bioinformatics Institute", "homeUrl": "https://www.ebi.ac.uk", "description": "At EMBL-EBI, we make the world\u2019s public biological data freely available to the scientific community via a range of services and tools, perform basic research and provide professional training in bioinformatics. \nWe are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states.", "rorId": "https://ror.org/02catss52", "location": {"countryCode": "GB", "countryName": "United Kingdom"}}, "location": {"countryCode": "GB", "countryName": "United Kingdom"}, "deprecated": false, "deprecationDate": null}, {"id": 1591, "mirId": "MIR:00100753", "urlPattern": "https://hpo.jax.org/app/browse/term/HP:{$id}", "name": "Human Phenotype Ontology at Institute for Medical Genetics and Human Genetics", "description": "Human Phenotype Ontology at Institute for Medical Genetics and Human Genetics", "official": true, "providerCode": "CURATOR_REVIEW", "sampleId": "0000118", "resourceHomeUrl": "http://human-phenotype-ontology.github.io/", "institution": {"id": 1590, "name": "Institute for Medical Genetics and Human Genetics, Charit\u00e9-Universit\u00e4tsmedizin, Berlin", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "DE", "countryName": "Germany"}}, "location": {"countryCode": "DE", "countryName": "Germany"}, "deprecated": false, "deprecationDate": null}], "sampleId": "0000118", "namespaceEmbeddedInLui": true, "deprecated": false, "deprecationDate": null}, {"id": 1593, "prefix": "sasbdb", "mirId": "MIR:00000572", "name": "SASBDB", "pattern": "^[Ss][Aa][Ss][A-Za-z0-9]{3}[0-9]$", "description": "Small Angle Scattering Biological Data Bank (SASBDB) is a curated repository for small angle X-ray scattering (SAXS) and neutron scattering (SANS) data and derived models. Small angle scattering (SAS) of X-ray and neutrons provides structural information on biological macromolecules in solution at a resolution of 1-2 nm. 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This collection references rules.", "created": "2019-06-11T14:17:56.089+0000", "modified": "2019-06-11T14:17:56.089+0000", "resources": [{"id": 1634, "mirId": "MIR:00100784", "urlPattern": "http://e-cyanobacterium.org/bcs/rule/{$id}/", "name": "e-cyanobacterium entity at Masaryk University Brno", "description": "e-cyanobacterium entity at Masaryk University Brno", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "56", "resourceHomeUrl": "http://www.e-cyanobacterium.org/bcs/rule/", "institution": {"id": 1629, "name": "Systems Biology Laboratory, Faculty of Informatics, Masaryk University Brno", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "CZ", "countryName": "Czech Republic"}}, "location": {"countryCode": "CZ", "countryName": "Czech Republic"}, "deprecated": false, "deprecationDate": null}], "sampleId": "56", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1635, "prefix": "lincs.data", "mirId": "MIR:00000588", "name": "LINCS Data", "pattern": "^[EL]D[SG]-\\d+$", "description": "The Library of Network-Based Cellular Signatures (LINCS) Program aims to create a network-based understanding of biology by cataloguing changes in gene expression and other cellular processes that occur when cells are exposed to perturbing agents. The data is organized and available as datasets, each including experimental data, metadata and a description of the dataset and assay. The dataset group comprises datasets for the same experiment but with different data level results (data processed to a different level).", "created": "2019-06-11T14:17:56.343+0000", "modified": "2019-06-11T14:17:56.343+0000", "resources": [{"id": 1636, "mirId": "MIR:00100785", "urlPattern": "http://lincsportal.ccs.miami.edu/datasets/#/view/{$id}", "name": "LINCS Data at University of Miami", "description": "LINCS Data at University of Miami", "official": true, "providerCode": "CURATOR_REVIEW", "sampleId": "LDS-1110", "resourceHomeUrl": "http://lincsportal.ccs.miami.edu/datasets/", "institution": {"id": 1526, "name": "University of Miami, BD2K-LINCS DCIC", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}, {"id": 1637, "mirId": "MIR:00100856", "urlPattern": "https://www.omicsdi.org/dataset/lincs/{$id}", "name": "Lincs through OmicsDI", "description": "Lincs through OmicsDI", "official": false, "providerCode": "omicsdi", "sampleId": "LDS-1110", "resourceHomeUrl": "https://www.omicsdi.org/", "institution": {"id": 2, "name": "European Bioinformatics Institute", "homeUrl": "https://www.ebi.ac.uk", "description": "At EMBL-EBI, we make the world\u2019s public biological data freely available to the scientific community via a range of services and tools, perform basic research and provide professional training in bioinformatics. \nWe are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states.", "rorId": "https://ror.org/02catss52", "location": {"countryCode": "GB", "countryName": "United Kingdom"}}, "location": {"countryCode": "GB", "countryName": "United Kingdom"}, "deprecated": false, "deprecationDate": null}], "sampleId": "LDS-1110", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1638, "prefix": "agricola", "mirId": "MIR:00000589", "name": "AGRICOLA", "pattern": "^\\d+$", "description": "AGRICOLA (AGRICultural OnLine Access) serves as the catalog and index to the collections of the National Agricultural Library, as well as a primary public source for world-wide access to agricultural information. The database covers materials in all formats and periods, including printed works from as far back as the 15th century.", "created": "2019-06-11T14:17:56.660+0000", "modified": "2019-06-11T14:17:56.660+0000", "resources": [{"id": 1640, "mirId": "MIR:00100789", "urlPattern": "http://ddr.nal.usda.gov/dspace/handle/10113/{$id}", "name": "AGRICOLA at National Agricultural Library", "description": "AGRICOLA at National Agricultural Library", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "50018", "resourceHomeUrl": "http://agricola.nal.usda.gov/", "institution": {"id": 1639, "name": "National Agricultural Library, United States Department of Agriculture", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}], "sampleId": "50018", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1641, "prefix": "ms", "mirId": "MIR:00000590", "name": "Mass Spectrometry Controlled Vocabulary", "pattern": "^MS:\\d{7}$", "description": "The PSI-Mass Spectrometry (MS) CV contains all the terms used in the PSI MS-related data standards. The CV contains a logical hierarchical structure to ensure ease of maintenance and the development of software that makes use of complex semantics. The CV contains terms required for a complete description of an MS analysis pipeline used in proteomics, including sample labeling, digestion enzymes, instrumentation parts and parameters, software used for identification and quantification of peptides/proteins and the parameters and scores used to determine their significance.", "created": "2019-06-11T14:17:56.919+0000", "modified": "2019-06-11T14:17:56.919+0000", "resources": [{"id": 1642, "mirId": "MIR:00100786", "urlPattern": "https://www.ebi.ac.uk/ols/ontologies/ms/terms?obo_id=MS:{$id}", "name": "Mass Spectrometry Controlled Vocabulary through OLS", "description": "Mass Spectrometry Controlled Vocabulary through OLS", "official": false, "providerCode": "ols", "sampleId": "1000001", "resourceHomeUrl": "https://www.ebi.ac.uk/ols/ontologies/ms", "institution": {"id": 2, "name": "European Bioinformatics Institute", "homeUrl": "https://www.ebi.ac.uk", "description": "At EMBL-EBI, we make the world\u2019s public biological data freely available to the scientific community via a range of services and tools, perform basic research and provide professional training in bioinformatics. \nWe are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states.", "rorId": "https://ror.org/02catss52", "location": {"countryCode": "GB", "countryName": "United Kingdom"}}, "location": {"countryCode": "GB", "countryName": "United Kingdom"}, "deprecated": false, "deprecationDate": null}, {"id": 1643, "mirId": "MIR:00100787", "urlPattern": "http://purl.bioontology.org/ontology/MS/MS:{$id}", "name": "Mass Spectrometry Controlled Vocabulary through BioPortal", "description": "Mass Spectrometry Controlled Vocabulary through BioPortal", "official": false, "providerCode": "bptl", "sampleId": "1000001", "resourceHomeUrl": "https://bioportal.bioontology.org/ontologies/MS", "institution": {"id": 5, "name": "National Center for Biomedical Ontology, Stanford", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}], "sampleId": "1000001", "namespaceEmbeddedInLui": true, "deprecated": false, "deprecationDate": null}, {"id": 1650, "prefix": "grid", "mirId": "MIR:00000593", "name": "GRID", "pattern": "^grid\\.[0-9]+\\.[a-f0-9]{1,2}$", "description": "International coverage of the world's leading research organisations, indexing 92% of funding allocated globally.", "created": "2019-06-11T14:17:57.806+0000", "modified": "2019-06-11T14:17:57.806+0000", "resources": [{"id": 1652, "mirId": "MIR:00100793", "urlPattern": "https://www.grid.ac/institutes/{$id}", "name": "GRID at Digital Science & Research Ltd.", "description": "GRID at Digital Science & Research Ltd.", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "grid.225360.0", "resourceHomeUrl": "https://www.grid.ac/", "institution": {"id": 1651, "name": "Digital Science &amp;amp; Research Ltd, London", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "GB", "countryName": "United Kingdom"}}, "location": {"countryCode": "GB", "countryName": "United Kingdom"}, "deprecated": false, "deprecationDate": null}], "sampleId": "grid.225360.0", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1653, "prefix": "medgen", "mirId": "MIR:00000594", "name": "MedGen", "pattern": "^[CN]*\\d{4,7}$", "description": "MedGen is a portal for information about conditions and phenotypes related to Medical Genetics. Terms from multiple sources are aggregated into concepts, each of which is assigned a unique identifier and a preferred name and symbol. The core content of the record may include names, identifiers used by other databases, mode of inheritance, clinical features, and map location of the loci affecting the disorder.", "created": "2019-06-11T14:17:58.068+0000", "modified": "2019-06-11T14:17:58.068+0000", "resources": [{"id": 1654, "mirId": "MIR:00100794", "urlPattern": "https://www.ncbi.nlm.nih.gov/medgen/{$id}", "name": "MedGen at NCBI", "description": "MedGen at NCBI", "official": false, "providerCode": "ncbi", "sampleId": "760050", "resourceHomeUrl": "https://www.ncbi.nlm.nih.gov/medgen/", "institution": {"id": 26, "name": "National Center for Biotechnology Information", "homeUrl": "https://www.ncbi.nlm.nih.gov/", "description": "The National Center for Biotechnology Information advances science and health by providing access to biomedical and genomic information.", "rorId": "https://ror.org/02meqm098", "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}], "sampleId": "760050", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1655, "prefix": "clinvar.submission", "mirId": "MIR:00000595", "name": "ClinVar Submission", "pattern": "^SCV\\d+(\\.\\d+)?$", "description": "ClinVar archives reports of relationships among medically important variants and phenotypes. It records human variation, interpretations of the relationship specific variations to human health, and supporting evidence for each interpretation. Each ClinVar record (RCV identifier) represents an aggregated view of interpretations of the same variation and condition from one or more submitters. Submissions for individual variation/phenotype combinations (SCV identifier) are also collected and made available separately. This collection references submissions, and is based on SCV accession.", "created": "2019-06-11T14:17:58.273+0000", "modified": "2019-06-11T14:17:58.273+0000", "resources": [{"id": 1656, "mirId": "MIR:00100795", "urlPattern": "http://www.ncbi.nlm.nih.gov/clinvar?term={$id}", "name": "ClinVar Submission at NCBI", "description": "ClinVar Submission at NCBI", "official": false, "providerCode": "ncbi", "sampleId": "SCV000151292", "resourceHomeUrl": "http://www.ncbi.nlm.nih.gov/clinvar/", "institution": {"id": 26, "name": "National Center for Biotechnology Information", "homeUrl": "https://www.ncbi.nlm.nih.gov/", "description": "The National Center for Biotechnology Information advances science and health by providing access to biomedical and genomic information.", "rorId": "https://ror.org/02meqm098", "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}], "sampleId": "SCV000151292", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1657, "prefix": "clinvar", "mirId": "MIR:00000596", "name": "ClinVar Variant", "pattern": "^\\d+$", "description": "ClinVar archives reports of relationships among medically important variants and phenotypes. It records human variation, interpretations of the relationship specific variations to human health, and supporting evidence for each interpretation. Each ClinVar record (RCV identifier) represents an aggregated view of interpretations of the same variation and condition from one or more submitters. Submissions for individual variation/phenotype combinations (SCV identifier) are also collected and made available separately. This collection references the Variant identifier.", "created": "2019-06-11T14:17:58.490+0000", "modified": "2019-06-11T14:17:58.490+0000", "resources": [{"id": 1658, "mirId": "MIR:00100796", "urlPattern": "https://www.ncbi.nlm.nih.gov/clinvar/variation/{$id}", "name": "ClinVar Variant at NCBI", "description": "ClinVar Variant at NCBI", "official": false, "providerCode": "ncbi", "sampleId": "12345", "resourceHomeUrl": "http://www.ncbi.nlm.nih.gov/clinvar/", "institution": {"id": 26, "name": "National Center for Biotechnology Information", "homeUrl": "https://www.ncbi.nlm.nih.gov/", "description": "The National Center for Biotechnology Information advances science and health by providing access to biomedical and genomic information.", "rorId": "https://ror.org/02meqm098", "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}], "sampleId": "12345", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1664, "prefix": "mir", "mirId": "MIR:00000599", "name": "Identifiers.org Registry", "pattern": "^MIR:\\d{8}$", "description": "The Identifiers.org registry contains registered namespace and provider prefixes with associated access URIs for a large number of high quality data collections. These prefixes are used in web resolution of compact identifiers of the form \u201cPREFIX:ACCESSION\u201d or \"PROVIDER/PREFIX:ACCESSION\u201d commonly used to specify bioinformatics and other data resources.", "created": "2019-06-11T14:17:59.221+0000", "modified": "2019-06-11T14:17:59.221+0000", "resources": [{"id": 1665, "mirId": "MIR:00100800", "urlPattern": "https://registry.identifiers.org/registry?query=MIR:{$id}", "name": "Identifiers.org Registry through EBI", "description": "Identifiers.org Registry through EBI", "official": false, "providerCode": "ebi", "sampleId": "00100037", "resourceHomeUrl": "https://registry.identifiers.org/registry", "institution": {"id": 2, "name": "European Bioinformatics Institute", "homeUrl": "https://www.ebi.ac.uk", "description": "At EMBL-EBI, we make the world\u2019s public biological data freely available to the scientific community via a range of services and tools, perform basic research and provide professional training in bioinformatics. \nWe are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states.", "rorId": "https://ror.org/02catss52", "location": {"countryCode": "GB", "countryName": "United Kingdom"}}, "location": {"countryCode": "GB", "countryName": "United Kingdom"}, "deprecated": false, "deprecationDate": null}], "sampleId": "00100037", "namespaceEmbeddedInLui": true, "deprecated": false, "deprecationDate": null}, {"id": 1669, "prefix": "cosmic", "mirId": "MIR:00000601", "name": "COSMIC Gene", "pattern": "^[A-Z0-9]+$", "description": "COSMIC is a comprehensive global resource for information on somatic mutations in human cancer, combining curation of the scientific literature with tumor resequencing data from the Cancer Genome Project at the Sanger Institute, U.K. This collection references genes.", "created": "2019-06-11T14:17:59.699+0000", "modified": "2019-06-11T14:17:59.699+0000", "resources": [{"id": 1670, "mirId": "MIR:00100802", "urlPattern": "http://cancer.sanger.ac.uk/cosmic/gene/overview?ln={$id}", "name": "COSMIC Gene at Sanger", "description": "COSMIC Gene at Sanger", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "BRAF", "resourceHomeUrl": "http://cancer.sanger.ac.uk/cosmic/", "institution": {"id": 1393, "name": "Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "GB", "countryName": "United Kingdom"}}, "location": {"countryCode": "GB", "countryName": "United Kingdom"}, "deprecated": false, "deprecationDate": null}], "sampleId": "BRAF", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1671, "prefix": "dbgap", "mirId": "MIR:00000602", "name": "dbGaP", "pattern": "^phs[0-9]{6}(.v\\d+.p\\d+)?$", "description": "The database of Genotypes and Phenotypes (dbGaP) archives and distributes the results of studies that have investigated the interaction of genotype and phenotype.", "created": "2019-06-11T14:17:59.890+0000", "modified": "2019-06-11T14:17:59.890+0000", "resources": [{"id": 1672, "mirId": "MIR:00100803", "urlPattern": "https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id={$id}", "name": "dbGaP through NCBI", "description": "dbGaP through NCBI", "official": true, "providerCode": "ncbi", "sampleId": "phs000768.v2.p1", "resourceHomeUrl": "https://www.ncbi.nlm.nih.gov/projects/gap", "institution": {"id": 26, "name": "National Center for Biotechnology Information", "homeUrl": "https://www.ncbi.nlm.nih.gov/", "description": "The National Center for Biotechnology Information advances science and health by providing access to biomedical and genomic information.", "rorId": "https://ror.org/02meqm098", "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}], "sampleId": "phs000768.v2.p1", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1673, "prefix": "iao", "mirId": "MIR:00000603", "name": "Information Artifact Ontology", "pattern": "^\\d{7}$", "description": "An ontology of information entities, originally driven by work by the Ontology of Biomedical Investigation (OBI) digital entity and realizable information entity branch.", "created": "2019-06-11T14:18:00.081+0000", "modified": "2019-06-11T14:18:00.081+0000", "resources": [{"id": 1675, "mirId": "MIR:00100804", "urlPattern": "http://purl.obolibrary.org/obo/IAO_{$id}", "name": "IAO through Ontobee", "description": "IAO through Ontobee", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "0000030", "resourceHomeUrl": "http://www.ontobee.org/ontology/IAO", "institution": {"id": 1674, "name": "University of Pennsylvania", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}], "sampleId": "0000030", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1676, "prefix": "gdc", "mirId": "MIR:00000604", "name": "Genomic Data Commons Data Portal", "pattern": "^[a-z0-9]{8}-[a-z0-9]{4}-[a-z0-9]{4}-[a-z0-9]{4}-[a-z0-9]{12}$", "description": "The GDC Data Portal is a robust data-driven platform that allows cancer researchers and bioinformaticians to search and download cancer data for analysis.", "created": "2019-06-11T14:18:00.311+0000", "modified": "2019-06-11T14:18:00.311+0000", "resources": [{"id": 1678, "mirId": "MIR:00100805", "urlPattern": "https://portal.gdc.cancer.gov/cases/{$id}", "name": "Genomic Data Commons", "description": "Genomic Data Commons", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "ae8c77fe-e6c8-44d5-8265-4a38c637bbef", "resourceHomeUrl": "https://gdc.cancer.gov", "institution": {"id": 1677, "name": "National Cancer Institute Genomic Data Commons, NIH", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}], "sampleId": "ae8c77fe-e6c8-44d5-8265-4a38c637bbef", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1679, "prefix": "omit", "mirId": "MIR:00000605", "name": "OMIT", "pattern": "^\\d{7}$", "description": "The purpose of the OMIT ontology is to establish data exchange standards and common data elements in the microRNA (miR) domain. Biologists (cell biologists in particular) and bioinformaticians can make use of OMIT to leverage emerging semantic technologies in knowledge acquisition and discovery for more effective identification of important roles performed by miRs in humans' various diseases and biological processes (usually through miRs' respective target genes).", "created": "2019-06-11T14:18:00.566+0000", "modified": "2019-06-11T14:18:00.566+0000", "resources": [{"id": 1680, "mirId": "MIR:00100806", "urlPattern": "https://www.ebi.ac.uk/ols/ontologies/omit/terms?short_form=OMIT_{$id}", "name": "Ontology for miRNA Target (OMIT) through OLS", "description": "Ontology for miRNA Target (OMIT) through OLS", "official": false, "providerCode": "ols", "sampleId": "0005506", "resourceHomeUrl": "https://www.ebi.ac.uk/ols/ontologies/omit/", "institution": {"id": 2, "name": "European Bioinformatics Institute", "homeUrl": "https://www.ebi.ac.uk", "description": "At EMBL-EBI, we make the world\u2019s public biological data freely available to the scientific community via a range of services and tools, perform basic research and provide professional training in bioinformatics. \nWe are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states.", "rorId": "https://ror.org/02catss52", "location": {"countryCode": "GB", "countryName": "United Kingdom"}}, "location": {"countryCode": "GB", "countryName": "United Kingdom"}, "deprecated": false, "deprecationDate": null}], "sampleId": "0005506", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1681, "prefix": "insdc.cds", "mirId": "MIR:00000606", "name": "INSDC CDS", "pattern": "^([A-Z]\\d{5}|[A-Z]{2}\\d{6}|[A-Z]{4}\\d{8}|[A-J][A-Z]{2}\\d{5})(\\.\\d+)?$", "description": "The coding sequence or protein identifiers as maintained in INSDC.", "created": "2019-06-11T14:18:00.782+0000", "modified": 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To accomplish its mission, the group leverages its interdisciplinary expertise in Machine Intelligence, Complex Systems and Computational Biology and pursues collaborative activities with relevant stakeholders.", "rorId": null, "location": {"countryCode": "GB", "countryName": "United Kingdom"}}, "location": {"countryCode": "GB", "countryName": "United Kingdom"}, "deprecated": false, "deprecationDate": null}], "sampleId": "82", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 2709, "prefix": "mlc", "mirId": "MIR:00000828", "name": "MLCommons Association", "pattern": "^[0-9a-zA-Z\\.\\-\\_]+$", "description": "MLCommons Association artifacts, including benchmark results, datasets, and saved models.", "created": "2021-06-24T16:02:06.844+0000", "modified": "2021-06-24T16:02:06.844+0000", "resources": [{"id": 2710, "mirId": "MIR:00000823", "urlPattern": "https://www.mlcommons.org/mlc-id/{$id}", "name": "MLCommons Association", "description": "The MLCommons Association is a non-profit founded to \"make ML better for everyone\" through benchmarks, public datasets, and best practices. 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The MLCommons board has representatives from Alibaba, Google, GraphCore, Facebook, Intel, Qualcomm, Myrtle.ai, NVIDIA, and a Harvard faculty member, and the organization has over 50 members consisting of companies and academics.", "rorId": null, "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}], "sampleId": "0.7-123", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 2720, "prefix": "corrdb", "mirId": "MIR:00000831", "name": "CorrDB", "pattern": "^[0-9]+$", "description": "A genetic correlation is the proportion of shared variance between two traits that is due to genetic causes; a phenotypic correlation is the degree to which two traits co-vary among individuals in a population. 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It consists of the \"GlycoNAVI Database\" that provides information such as existence ratios and names of glycans, 3D structures of glycans and complex glycoconjugates, and the \"GlycoNAVI tools\" such as editing of 2D structures of glycans, glycan structure viewers, and conversion tools.", "created": "2021-06-28T19:11:39.342+0000", "modified": "2022-11-08T15:20:10.791+0000", "resources": [{"id": 2715, "mirId": "MIR:00000822", "urlPattern": "https://glyconavi.org/hub/?id={$id}", "name": "The Noguchi Institute", "description": "The Noguchi Institute is a research institute licensed as a public interest incorporated foundation. 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They\u2019ve piloted educational models, developed new curricula to address emerging needs in health care, and produced thousands of leaders and compassionate caregivers who are shaping the fields of science and medicine throughout the world with their expertise and passion.", "rorId": null, "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}], "sampleId": "4DNES265ETYQ", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 2751, "prefix": "civic.aid", "mirId": "MIR:00000835", "name": "CIViC Assertion", "pattern": "^[0-9]+$", "description": "A CIViC assertion classifies the clinical significance of a variant-disease relationship under recognized guidelines. 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"MIR:00000842", "urlPattern": "https://sed-ml.org/urns.html#language:{$id}", "name": "SED-ML Editors", "description": "Editorial board responsible for defining the Simulation Experimental Description Markup Language (SED-ML).", "official": true, "providerCode": "sedml", "sampleId": "sbml.level-3.version-2", "resourceHomeUrl": "http://sed-ml.org/", "institution": {"id": 2788, "name": "SED-ML Editors", "homeUrl": "http://sed-ml.org/", "description": "Editorial board responsible for defining the Simulation Experimental Description Markup Language (SED-ML).", "rorId": null, "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}], "sampleId": "sbml.level-3.version-2", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 2796, "prefix": "pmr", "mirId": "MIR:00000845", "name": "Physiome Model Repository", "pattern": 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Each such source entered into CIViC is assigned a unique identifier and expert curators can curate guidance that assists future curators in the interpretation of information from this source.", "created": "2022-08-08T18:32:17.171+0000", "modified": "2022-08-08T18:32:17.171+0000", "resources": [{"id": 3253, "mirId": "MIR:00000952", "urlPattern": "https://civicdb.org/links/sources/{$id}", "name": "Clinical Interpretation of Variants in Cancer (CIViC)", "description": "CIViC is an open access, open source, community-driven web resource for Clinical Interpretation of Variants in Cancer.", "official": true, "providerCode": "civicdb", "sampleId": "62", "resourceHomeUrl": "https://civicdb.org/", "institution": {"id": 2750, "name": "Washington University in St. Louis", "homeUrl": "https://wustl.edu/", "description": "Organization information obtained from ROR API using ROR ID 'https://ror.org/01yc7t268' with Wikidata IDs [Q777403], and ISNI IDs [0000 0001 2355 7002]", "rorId": null, "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}], "sampleId": "62", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 3255, "prefix": "civic.tid", "mirId": "MIR:00000955", "name": "CIViC Therapy", "pattern": "^[0-9]+$", "description": "Therapies (often drugs) in CIViC are associated with Predictive Evidence Types, which describe sensitivity, resistance or adverse response to therapies when a given variant is present. The Therapy field may also be used to describe more general treatment types and regimes, such as FOLFOX or Radiation, as long as the literature derived Evidence Item makes a scientific association between the Therapy (treatment type) and the presence of the variant.", "created": "2022-08-08T18:33:25.710+0000", "modified": "2022-08-08T18:33:25.710+0000", "resources": [{"id": 3256, "mirId": "MIR:00000954", "urlPattern": "https://civicdb.org/links/drugs/{$id}", "name": "Clinical Interpretation of Variants in Cancer (CIViC)", "description": "CIViC is an open access, open source, community-driven web resource for Clinical Interpretation of Variants in Cancer.", "official": true, "providerCode": "civicdb", "sampleId": "14", "resourceHomeUrl": "https://civicdb.org/", "institution": {"id": 2750, "name": "Washington University in St. Louis", "homeUrl": "https://wustl.edu/", "description": "Organization information obtained from ROR API using ROR ID 'https://ror.org/01yc7t268' with Wikidata IDs [Q777403], and ISNI IDs [0000 0001 2355 7002]", "rorId": null, "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}], "sampleId": "14", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 3258, "prefix": "civic.did", "mirId": "MIR:00000957", "name": "CIViC Disease", "pattern": "^[0-9]+$", "description": "Within the CIViC database, the disease should be the cancer or cancer subtype that is a result of the described variant. The disease selected should be as specific as possible should reflect the disease type used in the source that supports the evidence statement.", "created": "2022-08-08T18:34:15.882+0000", "modified": "2022-08-08T18:34:15.882+0000", "resources": [{"id": 3259, "mirId": "MIR:00000956", "urlPattern": "https://civicdb.org/links/diseases/{$id}", "name": "Clinical Interpretation of Variants in Cancer (CIViC)", "description": "CIViC is an open access, open source, community-driven web resource for Clinical Interpretation of Variants in Cancer.https://civicdb.org/\n", "official": true, "providerCode": "civicdb", "sampleId": "46", "resourceHomeUrl": "https://civicdb.org/", "institution": {"id": 2750, "name": "Washington University in St. Louis", "homeUrl": "https://wustl.edu/", "description": "Organization information obtained from ROR API using ROR ID 'https://ror.org/01yc7t268' with Wikidata IDs [Q777403], and ISNI IDs [0000 0001 2355 7002]", "rorId": null, "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}], "sampleId": "46", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 3263, "prefix": "metatlas", "mirId": "MIR:00000959", "name": "Metabolic Atlas", "pattern": "^MA[MR]\\d{5}[a-z]?$", "description": "Metabolic Atlas facilitates metabolic modelling by presenting open source genome-scale metabolic models for easy browsing and analysis.", "created": "2022-08-08T18:36:40.981+0000", "modified": "2022-08-08T18:36:40.981+0000", "resources": [{"id": 3264, "mirId": "MIR:00000958", "urlPattern": "https://metabolicatlas.org/identifier/MetabolicAtlas/{$id}", "name": "Metabolic Atlas", "description": "Metabolic Atlas is a web platform integrating open-source genome scale metabolic models (GEMs) for easy browsing and analysis. The goal is to collect curated GEMs, and to bring these models closer to FAIR principles. The website provides visualisations and comparisons of the GEMs, and links to resources, algorithms, other databases, and more general software applications.", "official": true, "providerCode": "metatlas", "sampleId": "MAR01234", "resourceHomeUrl": "https://metabolicatlas.org", "institution": {"id": 3262, "name": "National Bioinformatics Infrastructure Sweden", "homeUrl": "https://nbis.se", "description": "NBIS (National Bioinformatics Infrastructure Sweden) is a distributed national research infrastructure supported by the Swedish Research Council (Vetenskapsr\u00e5det), Science for Life Laboratory, all major Swedish universities and the Knut and Alice Wallenberg Foundation, providing state-of-the-art bioinformatics to the Swedish life science researchers community. NBIS is also the Swedish contact point to the European infrastructure for biological information ELIXIR.\n\nPresent NBIS staff has expertise in protein bioinformatics, mass spectrometry (MS), next generation sequencing (NGS), large-scale data handling and integration, metagenomics, systems biology, biostatistics and RNAseq.\n\nNBIS is predominantly offering bioinformatics support in various projects, depending on the user needs. In the projects, the NBIS persons are working close to the research group, and they spend part of their time to teach the users in order to propagate the bioinformatics knowledge. Furthermore, NBIS provides infrastructure and tools for bioinformatics analyses in order to facilitate these analyses for the users.\n\nNBIS forms the bioinformatics platform at the Science for Life Laboratory.", "rorId": null, "location": {"countryCode": "SE", "countryName": "Sweden"}}, "location": {"countryCode": "SE", "countryName": "Sweden"}, "deprecated": false, "deprecationDate": null}], "sampleId": "MAR01234", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 2168, "prefix": "dandi", "mirId": "MIR:00000786", "name": "DANDI: Distributed Archives for Neurophysiology Data Integration", "pattern": "^\\d{6}(\\/\\d+\\.\\d+\\.\\d+)?$", "description": "DANDI works with BICCN and other BRAIN Initiative awardees to curate data using community data standards such as NWB and BIDS, and to make data and software for cellular neurophysiology FAIR (Findable, Accessible, Interoperable, and Reusable).\nDANDI references electrical and optical cellular neurophysiology recordings and associated MRI and/or optical imaging data.\nThese data will help scientists uncover and understand cellular level mechanisms of brain function. Scientists will study the formation of neural networks, how cells and networks enable functions such as learning and memory, and how these functions are disrupted in neurological disorders.", "created": "2020-03-24T05:11:19.658+0000", "modified": "2021-10-18T12:32:14.264+0000", "resources": [{"id": 2169, "mirId": "MIR:00000750", "urlPattern": "https://dandiarchive.org/dandiset/{$id}", "name": "DANDI: Distributed Archives for Neurophysiology Data Integration", "description": "DANDI is a Web platform for scientists to share, collaborate, and process data from cellular neurophysiology experiments. DANDI works with BICCN and other BRAIN Initiative awardees to curate data using community data standards such as NWB and BIDS, and to make data and software for cellular neurophysiology FAIR (Findable, Accessible, Interoperable, and Reusable). DANDI will store electrical and optical cellular neurophysiology recordings and associated MRI and/or optical imaging data. DANDI will provide: 1) A cloud platform for neurophysiology data storage for the purposes of collaboration and dissemination of data; 2) Easy to use tools for neurophysiology data submission, visualization, and access in the archive; and 3) Standardized applications for data ingestion, visualization and processing, which facilitate adoption of NWB and other standards. These data will help scientists uncover and understand cellular level mechanisms of brain function. Scientists will study the formation of neural networks, how cells and networks enable functions such as learning and memory, and how these functions are disrupted in neurological disorders.", "official": true, "providerCode": "dandi", "sampleId": "000017", "resourceHomeUrl": "https://dandiarchive.org/", "institution": {"id": 2167, "name": "Massachusetts Institute of Technology", "homeUrl": "http://web.mit.edu/", "description": "Founded to accelerate the nation\u2019s industrial revolution, MIT is profoundly American. With ingenuity and drive, our graduates have invented fundamental technologies, launched new industries, and created millions of American jobs. At the same time, and without the slightest sense of contradiction, MIT is profoundly global(opens in new window). Our community gains tremendous strength as a magnet for talent from around the world. Through teaching, research, and innovation, MIT\u2019s exceptional community pursues its mission of service to the nation and the world.", "rorId": null, "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}], "sampleId": "000017", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 3271, "prefix": "ror", "mirId": "MIR:00000961", "name": "ROR", "pattern": "^0[a-hj-km-np-tv-z|0-9]{6}[0-9]{2}$", "description": "ROR (Research Organization Registry) is a global, community-led registry\nof open persistent identifiers for research organizations. ROR is jointly\noperated by California Digital Library, Crossref, and Datacite.", "created": "2022-08-15T19:28:35.707+0000", "modified": "2022-08-18T13:14:34.725+0000", "resources": [{"id": 3272, "mirId": "MIR:00001056", "urlPattern": "https://ror.org/{$id}", "name": "ROR", "description": "ROR (Research Organization Registry) is a global, community-led registry of open persistent identifiers for research organizations. ", "official": true, "providerCode": "ror", "sampleId": "03yrm5c26", "resourceHomeUrl": "https://ror.org", "institution": {"id": 3270, "name": "California Digital Library", "homeUrl": "https://www.cdlib.org/", "description": "Organization information obtained from ROR API using ROR ID 'https://ror.org/03yrm5c26' with Wikidata IDs [Q5020447], and ISNI IDs [0000 0001 1957 5136]", "rorId": null, "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}], "sampleId": "03yrm5c26", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 3292, "prefix": "clb", "mirId": "MIR:00000964", "name": "ChecklistBank", "pattern": "^[0-9]+(LR)?$", "description": "ChecklistBank is an index and repository for taxonomic and nomenclatural datasets", "created": "2022-11-03T14:17:05.019+0000", "modified": "2022-11-03T14:17:05.019+0000", "resources": [{"id": 3293, "mirId": "MIR:00000963", "urlPattern": "https://www.checklistbank.org/dataset/{$id}", "name": "ChecklistBank", "description": "ChecklistBank at GBIF. Codeveloped with the Catalogue of Life", "official": true, "providerCode": "clb", "sampleId": "1010", "resourceHomeUrl": "https://www.checklistbank.org", "institution": {"id": 3291, "name": "Global Biodiversity Information Facility", "homeUrl": "https://www.gbif.org/", "description": "Organization information obtained from ROR API using ROR ID 'https://ror.org/05fjyn938' with Wikidata IDs [Q1531570], and no ISNI information", "rorId": null, "location": {"countryCode": "DK", "countryName": "Denmark"}}, "location": {"countryCode": "DK", "countryName": "Denmark"}, "deprecated": false, "deprecationDate": null}], "sampleId": "1010", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 3298, "prefix": "drugcentral", "mirId": "MIR:00000966", "name": "DrugCentral", "pattern": "^[0-9]+$", "description": "DrugCentral (http://drugcentral.org) is an open-access online drug compendium. DrugCentral integrates structure, bioactivity, regulatory, pharmacologic actions and indications for active pharmaceutical ingredients approved by FDA and other regulatory agencies. Monitoring of regulatory agencies for new drugs approvals ensures the resource is up-to-date. DrugCentral integrates content for active ingredients with pharmaceutical formulations, indexing drugs and drug label annotations, complementing similar resources available online. Its complementarity with other online resources is facilitated by cross referencing to external resources. At the molecular level, DrugCentral bridges drug-target interactions with pharmacological action and indications. The integration with FDA drug labels enables text mining applications for drug adverse events and clinical trial information. Chemical structure overlap between DrugCentral and five online drug resources, and the overlap between DrugCentral FDA-approved drugs and their presence in four different chemical collections, are discussed. DrugCentral can be accessed via the web application or downloaded in relational database format.", "created": "2022-11-04T09:54:32.976+0000", "modified": "2022-11-04T09:54:32.976+0000", "resources": [{"id": 3299, "mirId": "MIR:00000965", "urlPattern": "https://drugcentral.org/drugcard/{$id}", "name": "University of New Mexico", "description": "Organization information obtained from ROR API using ROR ID 'https://ror.org/05fs6jp91' with Wikidata IDs [Q1190812], and ISNI IDs [0000 0001 2188 8502]", "official": true, "providerCode": "drugcentral", "sampleId": "257", "resourceHomeUrl": "http://www.unm.edu/", "institution": {"id": 3297, "name": "University of New Mexico", "homeUrl": "http://www.unm.edu/", "description": "Organization information obtained from ROR API using ROR ID 'https://ror.org/05fs6jp91' with Wikidata IDs [Q1190812], and ISNI IDs [0000 0001 2188 8502]", "rorId": null, "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}], "sampleId": "257", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 3307, "prefix": "skm", "mirId": "MIR:00000968", "name": "Stress Knowledge Map", "pattern": "^rx[0-9]{5}$", "description": "Stress Knowledge Map (SKM, available at https://skm.nib.si) is a knowledge graph resulting from the integration of dispersed published information on plant molecular responses to biotic and abiotic stressors. ", "created": "2022-11-04T12:17:30.200+0000", "modified": "2022-11-04T12:17:30.200+0000", "resources": [{"id": 3308, "mirId": "MIR:00000967", "urlPattern": "https://skm.nib.si/api/pss/reactions?reaction_id={$id}&return_field=summary", "name": "National Institute of Biology", "description": "Organization information obtained from ROR API using ROR ID 'https://ror.org/03s5t0r17' with no Wikidata information, and ISNI IDs [0000 0004 0637 0790]", "official": true, "providerCode": "skm", "sampleId": "rx00408", "resourceHomeUrl": "http://www.nib.si/eng/", "institution": {"id": 3306, "name": "National Institute of Biology", "homeUrl": "http://www.nib.si/eng/", "description": "Organization information obtained from ROR API using ROR ID 'https://ror.org/03s5t0r17' with no Wikidata information, and ISNI IDs [0000 0004 0637 0790]", "rorId": null, "location": {"countryCode": "SI", "countryName": "Slovenia"}}, "location": {"countryCode": "SI", "countryName": "Slovenia"}, "deprecated": false, "deprecationDate": null}], "sampleId": "rx00408", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 3311, "prefix": "col", "mirId": "MIR:00000969", "name": "Catalogue of Life", "pattern": "^[23456789BCDFGHJKLMNPQRSTVWXYZ]{1,6}$", "description": "Identifier of a taxon or synonym in the Catalogue of Life", "created": "2022-11-04T13:50:22.141+0000", "modified": "2022-11-04T13:50:22.141+0000", "resources": [{"id": 3312, "mirId": "MIR:00000970", "urlPattern": "https://www.checklistbank.org/dataset/3LR/taxon/{$id}", "name": "ChecklistBank", "description": "ChecklistBank, an index and repository for taxonomic data, hosted at GBIF\n", "official": true, "providerCode": "clb", "sampleId": "4QHKG", "resourceHomeUrl": "https://www.checklistbank.org", "institution": {"id": 3291, "name": "Global Biodiversity Information Facility", "homeUrl": "https://www.gbif.org/", "description": "Organization information obtained from ROR API using ROR ID 'https://ror.org/05fjyn938' with Wikidata IDs [Q1531570], and no ISNI information", "rorId": null, "location": {"countryCode": "DK", "countryName": "Denmark"}}, "location": {"countryCode": "DK", "countryName": "Denmark"}, "deprecated": false, "deprecationDate": null}, {"id": 3328, "mirId": "MIR:00000971", "urlPattern": "https://www.catalogueoflife.org/data/taxon/{$id}", "name": "Catalogue of Life (COL)", "description": "The Catalogue of Life website providing a view onto the latest release of the COL Checklist.", "official": false, "providerCode": "col", "sampleId": "4QHKG", "resourceHomeUrl": "https://www.catalogueoflife.org", "institution": {"id": 3291, "name": "Global Biodiversity Information Facility", "homeUrl": "https://www.gbif.org/", "description": "Organization information obtained from ROR API using ROR ID 'https://ror.org/05fjyn938' with Wikidata IDs [Q1531570], and no ISNI information", "rorId": null, "location": {"countryCode": "DK", "countryName": "Denmark"}}, "location": {"countryCode": "DK", "countryName": "Denmark"}, "deprecated": false, "deprecationDate": null}], "sampleId": "4QHKG", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 3355, "prefix": "sciflection", "mirId": "MIR:00000973", "name": "Sciflection", "pattern": "^[0-9a-f]{8}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{12}$", "description": "Sciflection is a public repository for experiments and associated spectra, usually uploaded from Electronic Lab Notebooks, shared under FAIR conditions", "created": "2022-11-29T12:03:56.649+0000", "modified": "2022-11-29T12:03:56.649+0000", "resources": [{"id": 3356, "mirId": "MIR:00000972", "urlPattern": "https://sciflection.com/{$id}", "name": "Sciformation Consulting GmbH", "description": "Sciformation develops scientific software and integrated lab management solutions, comprising of chemical & hazardous material inventory, electronic lab notebook, analytical data management, literature, device databases and ordering systems. The high level of integration helps to gather comprehensive data describing the experiments, i.e. which batches or machinery was employed.", "official": true, "providerCode": "sciformation", "sampleId": "5ede4273-b26c-4ea4-adb7-3ce294ab3397", "resourceHomeUrl": "https://sciformation.com/sciflection.html", "institution": {"id": 3354, "name": "Sciformation Consulting GmbH", "homeUrl": "http://sciformation.com", "description": "Sciformation develops scientific software and integrated lab management solutions, comprising of chemical & hazardous material inventory, electronic lab notebook, analytical data management, literature, device databases and ordering systems. The high level of integration helps to gather comprehensive data describing the experiments, i.e. which batches or machinery was employed.", "rorId": null, "location": {"countryCode": "DE", "countryName": "Germany"}}, "location": {"countryCode": "DE", "countryName": "Germany"}, "deprecated": false, "deprecationDate": null}], "sampleId": "5ede4273-b26c-4ea4-adb7-3ce294ab3397", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 765, "prefix": "combine.specifications", "mirId": "MIR:00000258", "name": "COMBINE specifications", "pattern": "^\\w+(\\-|\\.|\\w)*$", "description": "The 'COmputational Modeling in BIology' NEtwork (COMBINE) is an initiative to coordinate the development of the various community standards and formats for computational models, initially in Systems Biology and related fields. This collection pertains to specifications of the standard formats developed by the Computational Modeling in Biology Network.", "created": "2019-06-11T14:16:39.210+0000", "modified": "2023-01-04T15:31:16.641+0000", "resources": [{"id": 766, "mirId": "MIR:00100329", "urlPattern": "https://github.com/combine-org/combine-specifications/blob/main/specifications/{$id}.md", "name": "COMBINE at EBI", "description": "COMBINE at EBI", "official": false, "providerCode": "ebi", "sampleId": "sed-ml.level-1.version-1", "resourceHomeUrl": "https://co.mbine.org/standards/", "institution": {"id": 2, "name": "European Bioinformatics Institute", "homeUrl": "https://www.ebi.ac.uk", "description": "At EMBL-EBI, we make the world\u2019s public biological data freely available to the scientific community via a range of services and tools, perform basic research and provide professional training in bioinformatics. \nWe are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states.", "rorId": "https://ror.org/02catss52", "location": {"countryCode": "GB", "countryName": "United Kingdom"}}, "location": {"countryCode": "GB", "countryName": "United Kingdom"}, "deprecated": false, "deprecationDate": null}], "sampleId": "sed-ml.level-1.version-1", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1217, "prefix": "panther.pthcmp", "mirId": "MIR:00000422", "name": "PANTHER Pathway Component", "pattern": "^[GPUCS]\\d{5}$", "description": "The PANTHER (Protein ANalysis THrough Evolutionary Relationships) Classification System is a resource that classifies genes by their functions, using published scientific experimental evidence and evolutionary relationships to predict function even in the absence of direct experimental evidence. The PANTHER Pathway Component collection references specific classes of molecules that play the same mechanistic role within a pathway, across species. Pathway\r\ncomponents may be proteins, genes/DNA, RNA, or simple molecules. Where the identified component is a protein, DNA, or transcribed RNA, it is associated with protein sequences in the PANTHER protein family trees through manual curation.", "created": "2019-06-11T14:17:16.858+0000", "modified": "2023-01-04T16:32:41.267+0000", "resources": [{"id": 1218, "mirId": "MIR:00100545", "urlPattern": "http://www.pantherdb.org/pathway/pathCatDetail.do?clsAccession={$id}", "name": "PANTHER Pathway Component at USC (Los Angeles)", "description": "PANTHER Pathway Component at USC (Los Angeles)", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "P00266", "resourceHomeUrl": "http://www.pantherdb.org/", "institution": {"id": 94, "name": "Keck School of Medicine, University of Southern California", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}], "sampleId": "P00266", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 341, "prefix": "genedb", "mirId": "MIR:00000106", "name": "GeneDB", "pattern": "^[\\w\\d\\.-]*$", "description": "GeneDB is a genome database for prokaryotic and eukaryotic organisms and provides a portal through which data generated by the \"Pathogen Genomics\" group at the Wellcome Trust Sanger Institute and other collaborating sequencing centres can be accessed.", "created": "2019-06-11T14:16:00.951+0000", "modified": "2023-01-05T20:09:01.371+0000", "resources": [{"id": 343, "mirId": "MIR:00100139", "urlPattern": "https://www.genedb.org/gene/{$id}", "name": "GeneDB at Sanger Institute", "description": "GeneDB at Sanger Institute", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "LinJ.20.0070", "resourceHomeUrl": "https://www.genedb.org/", "institution": {"id": 342, "name": "Pathogen Genomics, Sanger Institute and European Bioinformatics Institute", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "GB", "countryName": "United Kingdom"}}, "location": {"countryCode": "GB", "countryName": "United Kingdom"}, "deprecated": false, "deprecationDate": null}], "sampleId": "LinJ.20.0070", "namespaceEmbeddedInLui": false, "deprecated": true, "deprecationDate": "2023-01-05T20:09:01.370+0000"}, {"id": 220, "prefix": "mge", "mirId": "MIR:00000063", "name": "Aclame", "pattern": "^mge:\\d+$", "description": "ACLAME is a database dedicated to the collection and classification of mobile genetic elements (MGEs) from various sources, comprising all known phage genomes, plasmids and transposons.", "created": "2019-06-11T14:15:49.786+0000", "modified": "2023-01-10T13:18:19.511+0000", "resources": [{"id": 222, "mirId": "MIR:00100091", "urlPattern": "http://aclame.ulb.ac.be/perl/Aclame/Genomes/mge_view.cgi?view=info&id=mge:{$id}", "name": "Aclame database of mobile genetic elements", "description": "Aclame database of mobile genetic elements", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "2", "resourceHomeUrl": "http://aclame.ulb.ac.be/", "institution": {"id": 221, "name": "Service de Conformation de Macromol\u00e9cules Biologiques et de Bioinformatique, Universit\u00e9 Libre de Bruxelles", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "BE", "countryName": "Belgium"}}, "location": {"countryCode": "BE", "countryName": "Belgium"}, "deprecated": false, "deprecationDate": null}], "sampleId": "2", "namespaceEmbeddedInLui": true, "deprecated": true, "deprecationDate": "2023-01-10T13:18:19.506+0000"}, {"id": 2484, "prefix": "oma.hog", "mirId": "MIR:00000785", "name": "OMA HOGs", "pattern": "^HOG:[0-9]{7}(\\.[0-9a-z.]+)?(_[0-9]+)?$", "description": "Hierarchical orthologous groups predicted by OMA (Orthologous MAtrix) database. Hierarchical orthologous groups are sets of genes that have started diverging from a single common ancestor gene at a certain taxonomic level of reference. ", "created": "2020-12-14T12:57:54.560+0000", "modified": "2023-01-10T16:04:39.504+0000", "resources": [{"id": 2485, "mirId": "MIR:00000761", "urlPattern": "https://omabrowser.org/oma/hog/resolve/HOG:{$id}/", "name": "ETH Zurich", "description": "Organization information obtained from ROR API using ROR ID 'https://ror.org/05a28rw58' with Wikidata IDs [Q11942], and ISNI IDs [0000 0001 2156 2780]", "official": true, "providerCode": "oma", "sampleId": "HOG:0459895", "resourceHomeUrl": "https://omabrowser.org", "institution": {"id": 2483, "name": "ETH Zurich", "homeUrl": "https://ethz.ch/en.html", "description": "Organization information obtained from ROR API using ROR ID 'https://ror.org/05a28rw58' with Wikidata IDs [Q11942], and ISNI IDs [0000 0001 2156 2780]", "rorId": null, "location": {"countryCode": "CH", "countryName": "Switzerland"}}, "location": {"countryCode": "CH", "countryName": "Switzerland"}, "deprecated": false, "deprecationDate": null}], "sampleId": "0459895", "namespaceEmbeddedInLui": true, "deprecated": false, "deprecationDate": null}, {"id": 1437, "prefix": "gro", "mirId": "MIR:00000508", "name": "Gramene Growth Stage Ontology", "pattern": "^GRO:\\d+$", "description": "Gramene is a comparative genome mapping database for grasses and crop plants. It combines a semi-automatically generated database of cereal genomic and expressed sequence tag sequences, genetic maps, map relations, quantitative trait loci (QTL), and publications, with a curated database of mutants (genes and alleles), molecular markers, and proteins. This collection refers to growth stage ontology information in Gramene.", "created": "2019-06-11T14:17:36.384+0000", "modified": "2023-01-10T16:08:16.467+0000", "resources": [{"id": 1438, "mirId": "MIR:00100649", "urlPattern": "http://www.gramene.org/db/ontology/search?id=GRO:{$id}", "name": "Gramene Growth Stage Ontology at Cold Spring Harbor", "description": "Gramene Growth Stage Ontology at Cold Spring Harbor", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "0007133", "resourceHomeUrl": "http://www.gramene.org/", "institution": {"id": 556, "name": "Cold Spring Harbor Laboratory, New York", "homeUrl": "CURATOR_REVIEW", "description": "CURATOR_REVIEW", "rorId": null, "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}], "sampleId": "0007133", "namespaceEmbeddedInLui": true, "deprecated": false, "deprecationDate": null}, {"id": 3369, "prefix": "tair.name", "mirId": "MIR:00000976", "name": "TAIR gene name", "pattern": "^AT.G[0-9]{5}$", "description": "The Arabidopsis Information Resource (TAIR) maintains a database of genetic and molecular biology data for the model higher plant Arabidopsis thaliana. The name of a Locus is unique and used by TAIR, TIGR, and MIPS.", "created": "2023-01-12T10:08:07.976+0000", "modified": "2023-01-12T10:08:07.976+0000", "resources": [{"id": 3370, "mirId": "MIR:00000975", "urlPattern": "https://www.arabidopsis.org/servlets/TairObject?type=locus&name={$id}", "name": "TAIR", "description": "The Arabidopsis Information Resource (TAIR) collects information and maintains a database of genetic and molecular biology data for Arabidopsis thaliana, a widely used model plant.", "official": true, "providerCode": "tair", "sampleId": "AT5G05330", "resourceHomeUrl": "https://www.arabidopsis.org/index.jsp", "institution": {"id": 3367, "name": "Phoenix Bioinformatics", "homeUrl": "https://www.phoenixbioinformatics.org/", "description": "Organization information obtained from ROR API using ROR ID 'https://ror.org/0018yg518' with no Wikidata information, and ISNI IDs [0000 0004 4665 2899]", "rorId": null, "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}], "sampleId": "AT5G05330", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 3380, "prefix": "civic.vgid", "mirId": "MIR:00000979", "name": "CIViC Variant Group", "pattern": "^[0-9]+$", "description": "Variant Groups in CIViC provide user-defined grouping of Variants within and between genes based on unifying characteristics. CIViC curators are required to define a cohesive rationale for grouping these variants together, summarize their relevance to cancer diagnosis, prognosis or treatment and highlight any treatments or cancers of particular relevance", "created": "2023-01-23T09:52:20.012+0000", "modified": "2023-01-23T09:52:20.012+0000", "resources": [{"id": 3381, "mirId": "MIR:00000978", "urlPattern": "https://civicdb.org/links/variant_group/{$id}", "name": "Clinical Interpretation of Variants in Cancer (CIViC)", "description": "CIViC is an open access, open source, community-driven web resource for Clinical Interpretation of Variants in Cancer.", "official": true, "providerCode": "civicdb", "sampleId": "16", "resourceHomeUrl": "https://civicdb.org/", "institution": {"id": 2750, "name": "Washington University in St. Louis", "homeUrl": "https://wustl.edu/", "description": "Organization information obtained from ROR API using ROR ID 'https://ror.org/01yc7t268' with Wikidata IDs [Q777403], and ISNI IDs [0000 0001 2355 7002]", "rorId": null, "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}], "sampleId": "16", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 3383, "prefix": "civic.mpid", "mirId": "MIR:00000981", "name": "CIViC Molecular Profile", "pattern": "^[0-9]+$", "description": "CIViC Molecular Profiles are combinations of one or more CIViC variants. Most Molecular Profiles are \u201cSimple\u201d Molecular Profiles comprised of a single variant. In most cases, these can be considered equivalent to the CIViC concept of a Variant. However, increasingly clinical significance must be considered in the context of multiple variants simultaneously. Complex Molecular Profiles in CIViC allow for curation of such variant combinations. Regardless of the nature of the Molecular Profile (Simple or Complex), it must have a Predictive, Prognostic, Predisposing, Diagnostic, Oncogenic, or Functional clinical relevance to be entered in CIViC.", "created": "2023-01-23T09:53:23.139+0000", "modified": "2023-01-23T09:53:23.139+0000", "resources": [{"id": 3384, "mirId": "MIR:00000980", "urlPattern": "https://civicdb.org/links/molecular_profile/{$id}", "name": "Clinical Interpretation of Variants in Cancer (CIViC)", "description": "CIViC is an open access, open source, community-driven web resource for Clinical Interpretation of Variants in Cancer.", "official": true, "providerCode": "civicdb", "sampleId": "559", "resourceHomeUrl": "https://civicdb.org/", "institution": {"id": 2750, "name": "Washington University in St. Louis", "homeUrl": "https://wustl.edu/", "description": "Organization information obtained from ROR API using ROR ID 'https://ror.org/01yc7t268' with Wikidata IDs [Q777403], and ISNI IDs [0000 0001 2355 7002]", "rorId": null, "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}], "sampleId": "559", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 3391, "prefix": "clo", "mirId": "MIR:00000983", "name": "Cell Line Ontology", "pattern": "^\\d{7}$", "description": "The Cell Line Ontology is a community-based ontology of cell lines. The CLO is developed to unify publicly available cell line entry data from multiple sources to a standardized logically defined format based on consensus design patterns.", "created": "2023-01-23T10:14:16.128+0000", "modified": "2023-01-23T10:14:16.128+0000", "resources": [{"id": 3392, "mirId": "MIR:00000982", "urlPattern": "https://www.ebi.ac.uk/ols/ontologies/clo/terms?short_form=CLO_{$id}", "name": "CLO through OLS", "description": "Cell Line Ontology (CLO) through OLS. The Ontology Lookup Service (OLS) is a repository for biomedical ontologies that aims to provide a single point of access to the latest ontology versions. You can browse the ontologies through the website as well as programmatically via the OLS API. OLS is developed and maintained by the Samples, Phenotypes, and Ontologies Team at EMBL-EBI.", "official": true, "providerCode": "ols", "sampleId": "0000091", "resourceHomeUrl": "https://www.ebi.ac.uk/ols/ontologies/clo", "institution": {"id": 3390, "name": "University of Michigan\u2013Ann Arbor", "homeUrl": "https://www.umich.edu/", "description": "Organization information obtained from ROR API using ROR ID 'https://ror.org/00jmfr291' with Wikidata IDs [Q230492], and ISNI IDs [0000 0000 8683 7370]", "rorId": null, "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}, {"id": 3398, "mirId": "MIR:00000984", "urlPattern": "https://bioportal.bioontology.org/ontologies/CLO/?p=classes&conceptid=http://purl.obolibrary.org/obo/CLO_{$id}", "name": "Center for Biomedical Informatics Research, Stanford", "description": "Our vision is that all biomedical knowledge and data are disseminated on the Internet using principled ontologies in such a way that the knowledge and data are semantically interoperable and useful for furthering biomedical science and clinical care. Our mission is to create software and support services for the application of principled ontologies in biomedical science and clinical care, ranging from tools for application developers to software for end-users.", "official": false, "providerCode": "bioportal", "sampleId": "0000091", "resourceHomeUrl": "https://bioportal.bioontology.org", "institution": {"id": 3397, "name": "Center for Biomedical Informatics Research, Stanford", "homeUrl": "https://bioportal.bioontology.org", "description": "Our vision is that all biomedical knowledge and data are disseminated on the Internet using principled ontologies in such a way that the knowledge and data are semantically interoperable and useful for furthering biomedical science and clinical care. Our mission is to create software and support services for the application of principled ontologies in biomedical science and clinical care, ranging from tools for application developers to software for end-users.", "rorId": null, "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}], "sampleId": "0000091", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 3404, "prefix": "empiar", "mirId": "MIR:00000986", "name": "EMPIAR", "pattern": "EMPIAR-\\d{5,}", "description": "EMPIAR, the Electron Microscopy Public Image Archive, is a public resource for raw images underpinning 3D cryo-EM maps and tomograms (themselves archived in EMDB). EMPIAR also accommodates 3D datasets obtained with volume EM techniques and soft and hard X-ray tomography.", "created": "2023-01-25T11:52:06.260+0000", "modified": "2023-01-25T11:52:06.260+0000", "resources": [{"id": 3405, "mirId": "MIR:00000985", "urlPattern": "https://www.ebi.ac.uk/empiar/{$id}", "name": "European Bioinformatics Institute", "description": "At EMBL-EBI, we make the world\u2019s public biological data freely available to the scientific community via a range of services and tools, perform basic research and provide professional training in bioinformatics. \nWe are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states.", "official": true, "providerCode": "empiar", "sampleId": "EMPIAR-10002", "resourceHomeUrl": "https://www.ebi.ac.uk", "institution": {"id": 2, "name": "European Bioinformatics Institute", "homeUrl": "https://www.ebi.ac.uk", "description": "At EMBL-EBI, we make the world\u2019s public biological data freely available to the scientific community via a range of services and tools, perform basic research and provide professional training in bioinformatics. \nWe are part of the European Molecular Biology Laboratory (EMBL), an international, innovative and interdisciplinary research organisation funded by 26 member states and two associate member states.", "rorId": "https://ror.org/02catss52", "location": {"countryCode": "GB", "countryName": "United Kingdom"}}, "location": {"countryCode": "GB", "countryName": "United Kingdom"}, "deprecated": false, "deprecationDate": null}], "sampleId": "EMPIAR-10002", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 1647, "prefix": "ark", "mirId": "MIR:00000592", "name": "Archival Resource Key (ARK)", "pattern": "^(ark\\:)/*[0-9A-Za-z]+(?:/[\\w/.=*+@\\$-]*)?(?:\\?.*)?$", "description": "Archival Resource Keys (ARKs) serve as persistent identifiers, or stable, trusted references for information objects. Among other things, they aim to be web addresses (URLs) that don\u2019t return 404 Page Not Found errors. The ARK Alliance is an open global community supporting the ARK infrastructure on behalf of research and scholarship. End users, especially researchers, rely on ARKs for long term access to the global scientific and cultural record. Since 2001 some 8.2 billion ARKs have been created by over 1000 organizations \u2014 libraries, data centers, archives, museums, publishers, government agencies, and vendors. They identify anything digital, physical, or abstract. ARKs are open, mainstream, non-paywalled, decentralized persistent identifiers that can be created by an organization as soon as it is registered with a NAAN (Name Assigning Authority Number). Once registered, an ARK organization can create unlimited numbers of ARKs and publicize them via the n2t.net global resolver or via their own local resolver.", "created": "2019-06-11T14:17:57.583+0000", "modified": "2023-01-31T08:16:22.071+0000", "resources": [{"id": 1649, "mirId": "MIR:00100792", "urlPattern": "http://n2t.net/ark:{$id}", "name": "Archival Resource Key (ARK)", "description": "ARKs via the Name-to-Thing (n2t.net) resolver.", "official": false, "providerCode": "CURATOR_REVIEW", "sampleId": "/53355/cl010066723", "resourceHomeUrl": "https://arks.org", "institution": {"id": 1648, "name": "California Digital Library, University of California Office of the President", "homeUrl": "https://cdlib.org/", "description": "The CDL was founded by the University of California in 1997 to take advantage of emerging technologies that were transforming the way digital information was being published and accessed. Since then, in collaboration with the UC libraries and other partners, we assembled one of the world\u2019s largest digital research libraries and changed the ways that faculty, students, and researchers discover and access information.", "rorId": "https://ror.org/03yrm5c26", "location": {"countryCode": "US", "countryName": "United States"}}, "location": {"countryCode": "US", "countryName": "United States"}, "deprecated": false, "deprecationDate": null}], "sampleId": "/53355/cl010066723", "namespaceEmbeddedInLui": true, "deprecated": false, "deprecationDate": null}, {"id": 3429, "prefix": "nlfff", "mirId": "MIR:00000988", "name": "NLFFF Database", "pattern": "^[0-9]+$", "description": "Nonlinear Force-Free Field Three-Dimensional Magnetic Fields Data of Solar Active Regions Database", "created": "2023-02-03T09:47:17.713+0000", "modified": "2023-02-03T09:47:17.713+0000", "resources": [{"id": 3430, "mirId": "MIR:00000987", "urlPattern": "http://database.deepsolar.space:18080/dbs/nlfff/{$id}", "name": "Deepsolar Laboratory", "description": "State Key Laboratory of Space Weather, National Space Science Center, Chinese Academy of Sciences, Beijing, 100190, China", "official": true, "providerCode": "deeps", "sampleId": "345201101230312003", "resourceHomeUrl": "https://nlfff.dataset.deepsolar.space/en/", "institution": {"id": 3428, "name": "Deepsolar Laboratory", "homeUrl": "http://www.deepsolar.space", "description": "State Key Laboratory of Space Weather, National Space Science Center, Chinese Academy of Sciences, Beijing, 100190, China", "rorId": null, "location": {"countryCode": "CN", "countryName": "China"}}, "location": {"countryCode": "CN", "countryName": "China"}, "deprecated": false, "deprecationDate": null}], "sampleId": "345201101230312003", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 3467, "prefix": "utrdb", "mirId": "MIR:00000993", "name": "UTRdb", "pattern": "([3-5][A-Z])\\w+[^A-Z][0-9]", "description": "A curated database of 5' and 3' untranslated sequences of eukaryotic mRNAs. In the current update, the UTR entries are organized in a gene-centric structure to better visualize and retrieve 5' and 3'UTR variants generated by alternative initiation and termination of transcription and alternative splicing. Experimentally validated miRNA targets and conserved sequence elements are also annotated. The integration of UTRdb with genomic data has allowed the implementation of an efficient annotation system and a powerful retrieval resource for the selection and extraction of specific UTR subsets. ", "created": "2023-02-23T11:08:58.437+0000", "modified": "2023-02-23T11:21:10.786+0000", "resources": [{"id": 3468, "mirId": "MIR:00000992", "urlPattern": "https://utrdb.cloud.ba.infn.it/cgi-bin/utrdb/utrdb?e={$id}", "name": "University of Bari Aldo Moro", "description": "Organization information obtained from ROR API using ROR ID 'https://ror.org/027ynra39' with Wikidata IDs [Q1236136], and ISNI IDs [0000 0001 0120 3326]", "official": true, "providerCode": "uniba", "sampleId": "5UTR_107_ENST00000517291.2", "resourceHomeUrl": "https://utrdb.cloud.ba.infn.it/utrdb/index_107.html", "institution": {"id": 3466, "name": "University of Bari Aldo Moro", "homeUrl": "https://www.uniba.it/en", "description": "Organization information obtained from ROR API using ROR ID 'https://ror.org/027ynra39' with Wikidata IDs [Q1236136], and ISNI IDs [0000 0001 0120 3326]", "rorId": null, "location": {"countryCode": "IT", "countryName": "Italy"}}, "location": {"countryCode": "IT", "countryName": "Italy"}, "deprecated": false, "deprecationDate": null}], "sampleId": "5UTR_107_ENST00000517291.2", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}, {"id": 3472, "prefix": "biokc", "mirId": "MIR:00000995", "name": "BioKC", "pattern": "bkc[0-9]*", "description": "BioKC (Biological Knowledge Curation), is a web-based collaborative platform for the curation and annotation of biomedical knowledge following the standard data model from Systems Biology Markup Language (SBML).", "created": "2023-03-01T11:40:49.456+0000", "modified": "2023-03-01T11:40:49.456+0000", "resources": [{"id": 3473, "mirId": "MIR:00000994", "urlPattern": "https://biokb.lcsb.uni.lu/fact/{$id}", "name": "Luxembourg Centre for Systems Biomedicine", "description": "The LCSB is accelerating biomedical research by closing the link between systems biology and medical research. Collaboration between biologists, medical doctors, computer scientists, physicists, engineers and mathematicians is offering new insights in complex systems like cells, organs, and organisms. These insights are essential for understanding principal mechanisms of disease pathogenesis and for developing new tools in diagnostics and therapy.", "official": true, "providerCode": "bkc", "sampleId": "bkc640", "resourceHomeUrl": "https://wwwen.uni.lu/lcsb", "institution": {"id": 3471, "name": "University of Luxembourg", "homeUrl": "https://wwwen.uni.lu/", "description": "Organization information obtained from ROR API using ROR ID 'https://ror.org/036x5ad56' with Wikidata IDs [Q59668], and ISNI IDs [0000 0001 2295 9843]", "rorId": null, "location": {"countryCode": "LU", "countryName": "Luxembourg"}}, "location": {"countryCode": "LU", "countryName": "Luxembourg"}, "deprecated": false, "deprecationDate": null}], "sampleId": "bkc640", "namespaceEmbeddedInLui": false, "deprecated": false, "deprecationDate": null}]}}
\ No newline at end of file
diff --git a/static/images/hexagon_color_bs.png b/static/images/hexagon_color_bs.png
new file mode 100644
index 00000000..bc478962
Binary files /dev/null and b/static/images/hexagon_color_bs.png differ
diff --git a/templates/bioschemas.html b/templates/bioschemas.html
index 797b0fa6..22ce4362 100644
--- a/templates/bioschemas.html
+++ b/templates/bioschemas.html
@@ -1,4 +1,6 @@
-<link rel="stylesheet" href="../static/css/bulma-divider.min.css">{% extends "layout.html" %}
+<link rel="stylesheet" href="../static/css/bulma-divider.min.css">
+
+{% extends "layout.html" %}
 
 {% block nav %}
 {% include 'nav.html' %}
@@ -8,13 +10,13 @@
 
 <script type="text/javascript" charset="utf-8">
 
-    $(document).ready(function () {
+$(document).ready(function () {
 
-        console.log("ready!");
-        $("#notif").addClass("is-hidden");
+    console.log("ready!");
+    $("#notif").addClass("is-hidden");
 
-        console.log('trying to connect...');
-        var socket = io.connect({{ config['SERVER_IP']| tojson }});
+    console.log('trying to connect...');
+    var socket = io.connect({{ config['SERVER_IP']| tojson }});
     //var socket = io();
     console.log('connected');
 
@@ -22,7 +24,6 @@
     // click handlers
     //////////////////
 
-
     //////////////////
     // event handlers
     //////////////////
@@ -33,102 +34,55 @@
     });
 
 
-    socket.on('done_check_shape', function (data) {
-        console.log("Validated SHACL shape");
-        console.log(data);
-        var valid_html = "";
-        $.each(data, function (key, value) {
-            var resource = key
-            var type = data[key]['type']
-            var profile = data[key]['ref_profile']
-            var conforms = data[key]['conforms']
-            valid_html += '<div class="block">'
-            valid_html += '<h5 class="subtitle"> <span class="tag is-info is-light"><a target=_blank href=' + resource + '></h5'
-            valid_html += '<p>' + resource + '</a></span> has type <span class="tag is-dark"><a target=_blank href=' + type + '>' + type + '</a></span> </p>'
-            valid_html += '<p>should be conform to profile <span class="tag is-dark"><a target=_blank href=' + profile + '>' + profile + '</a></span></p><br>'
-
-            if (conforms == true) {
-                valid_html += '<p> has a <span class="has-text-success has-text-weight-bold">valid</span> Bioschemas profile</p>'
-            } else {
-                valid_html += '<div class="columns is-multiline is-mobile">'
-                valid_html += '<div class="column is-one-half">'
-                valid_html += '<table class="table is-striped is-fullwidth">'
-                valid_html += '<thead><tr><th>Required missing properties</th></tr></thead>'
-                valid_html += '<tbody>'
-                $.each(data[key]['errors'], function (index, item) {
-                    var row = '<tr>';
-                    row += '<td> <span class="tag is-light"><a target=_blank href=' + item + '>' + item + '</a></span> <span class="has-text-danger has-text-weight-bold">must be</span> provided</td>';
-                    valid_html += row + '</tr>';
-                });
-                valid_html += '</tbody></table></div>'
-                valid_html += '<div class="column is-one-half">'
-                valid_html += '<table class="table is-striped is-fullwidth">'
-                valid_html += '<thead><tr><th>Improvements</th></tr></thead>'
-                valid_html += '<tbody>'
-                $.each(data[key]['warnings'], function (index, item) {
-                    var row = '<tr>';
-                    row += '<td><span class="tag is-light"><a target=_blank href=' + item + '>' + item + '</a></span> <span class="has-text-warning has-text-weight-bold">should be</span> provided</td>';
-                    valid_html += row + '</tr>';
-                });
-                valid_html += '</tbody></table></div>'
-                valid_html += '</div>'
-            }
-            valid_html += '</div>'
-        });
-        $('#block_valid').html(valid_html);
-        // $("#btn_bioschemas").removeClass("is-loading");
-        // $("#btn_annot_bioschemas").removeClass("is-hidden");
-        // $("#article-bioschemas-check").find(".block").removeClass("is-hidden");
-    });
 
 
 
-    data = {{ results | tojson | safe }};
-    console.log(data)
-    var valid_html = "";
-    $.each(data, function (key, value) {
-        var resource = key
-        var type = data[key]['type']
-        var profile = data[key]['ref_profile']
-        var conforms = data[key]['conforms']
-        valid_html += '<div class="block">'
-        valid_html += '<h5 class="subtitle"> <span class="tag is-info is-light"><a target=_blank href=' + resource + '></h5'
-        valid_html += '<p>' + resource + '</a></span> has type <span class="tag is-dark"><a target=_blank href=' + type + '>' + type + '</a></span> </p>'
-        valid_html += '<p>should be conform to profile <span class="tag is-dark"><a target=_blank href=' + profile + '>' + profile + '</a></span></p><br>'
-
-        if (conforms == true) {
-            valid_html += '<p> has a <span class="has-text-success has-text-weight-bold">valid</span> Bioschemas profile</p>'
-        } else {
-            valid_html += '<div class="columns is-multiline is-mobile">'
-            valid_html += '<div class="column is-one-half">'
-            valid_html += '<table class="table is-striped is-fullwidth">'
-            valid_html += '<thead><tr><th>Required missing properties</th></tr></thead>'
-            valid_html += '<tbody>'
-            $.each(data[key]['errors'], function (index, item) {
-                var row = '<tr>';
-                row += '<td> <span class="tag is-light"><a target=_blank href=' + item + '>' + item + '</a></span> <span class="has-text-danger has-text-weight-bold">must be</span> provided</td>';
-                valid_html += row + '</tr>';
-            });
-            valid_html += '</tbody></table></div>'
-            valid_html += '<div class="column is-one-half">'
-            valid_html += '<table class="table is-striped is-fullwidth">'
-            valid_html += '<thead><tr><th>Improvements</th></tr></thead>'
-            valid_html += '<tbody>'
-            $.each(data[key]['warnings'], function (index, item) {
-                var row = '<tr>';
-                row += '<td><span class="tag is-light"><a target=_blank href=' + item + '>' + item + '</a></span> <span class="has-text-warning has-text-weight-bold">should be</span> provided</td>';
-                valid_html += row + '</tr>';
-            });
-            valid_html += '</tbody></table></div>'
-            valid_html += '</div>'
-        }
-        valid_html += '</div>'
-    });
-    console.log(valid_html)
-    $('#block_valid').html(valid_html);
-    $("#section-describe").find(".block").removeClass("is-hidden");
-    $("#article-bioschemas-check").find(".block").removeClass("is-hidden");
-    $("#btn_annot_bioschemas").removeClass("is-hidden");
+    // data = {{ results | tojson | safe }};
+    // // console.log(data)
+    // var valid_html = "";
+    // $.each(data, function (key, value) {
+    //     var resource = key
+    //     var type = data[key]['type']
+    //     var profile = data[key]['ref_profile']
+    //     var conforms = data[key]['conforms']
+    //     valid_html += '<div class="block">'
+    //     valid_html += '<h5 class="subtitle"> <span class="tag is-info is-light"><a target=_blank href=' + resource + '></h5'
+    //     valid_html += '<p>' + resource + '</a></span> has type <span class="tag is-dark"><a target=_blank href=' + type + '>' + type + '</a></span> </p>'
+    //     valid_html += '<p>should be conform to profile <span class="tag is-dark"><a target=_blank href=' + profile + '>' + profile + '</a></span></p><br>'
+
+    //     if (conforms == true) {
+    //         valid_html += '<p> has a <span class="has-text-success has-text-weight-bold">valid</span> Bioschemas profile</p>'
+    //     } else {
+    //         valid_html += '<div class="columns is-multiline is-mobile">'
+    //         valid_html += '<div class="column is-one-half">'
+    //         valid_html += '<table class="table is-striped is-fullwidth">'
+    //         valid_html += '<thead><tr><th>Required missing properties</th></tr></thead>'
+    //         valid_html += '<tbody>'
+    //         $.each(data[key]['errors'], function (index, item) {
+    //             var row = '<tr>';
+    //             row += '<td> <span class="tag is-light"><a target=_blank href=' + item + '>' + item + '</a></span> <span class="has-text-danger has-text-weight-bold">must be</span> provided</td>';
+    //             valid_html += row + '</tr>';
+    //         });
+    //         valid_html += '</tbody></table></div>'
+    //         valid_html += '<div class="column is-one-half">'
+    //         valid_html += '<table class="table is-striped is-fullwidth">'
+    //         valid_html += '<thead><tr><th>Improvements</th></tr></thead>'
+    //         valid_html += '<tbody>'
+    //         $.each(data[key]['warnings'], function (index, item) {
+    //             var row = '<tr>';
+    //             row += '<td><span class="tag is-light"><a target=_blank href=' + item + '>' + item + '</a></span> <span class="has-text-warning has-text-weight-bold">should be</span> provided</td>';
+    //             valid_html += row + '</tr>';
+    //         });
+    //         valid_html += '</tbody></table></div>'
+    //         valid_html += '</div>'
+    //     }
+    //     valid_html += '</div>'
+    // });
+    // // console.log(valid_html)
+    // $('#block_valid').html(valid_html);
+    // $("#section-describe").find(".block").removeClass("is-hidden");
+    // $("#article-bioschemas-check").find(".block").removeClass("is-hidden");
+    // $("#btn_annot_bioschemas").removeClass("is-hidden");
 
 });
 
@@ -180,11 +134,13 @@ <h1 class="subtitle"><b>Bioschemas validation results</b></h1>
             <div class="block">
                 <section id="section-BioSchemas" class="section">
                     <!-- <h3 class="title is-3">BioSchemas profiles checks</h3> -->
+
                     <p>Bioschemas is a community effort aimed at reusing and extending Schema.org for better life
                         science digital resource findability. Several profiles are defined for each kind of Life Science
                         resources, specifying minimal, recommended or optional information. Are minimal
                         information missing ? Should other information be provided for better findability ?</p>
                     <br>
+
                     <div class="field is-grouped is-grouped-centered">
                         <!-- <p class="control"><a id="btn_fairness" class="button is-primary">Vocab. checks</a></p> -->
                         <!-- <p class="control"><a id="btn_bioschemas" class="button is-warning is-large">Check BioSchemas
@@ -192,9 +148,13 @@ <h1 class="subtitle"><b>Bioschemas validation results</b></h1>
                         </p> -->
                     </div>
 
-                    <div id="block_valid" class="block">
+                    {% block test %}
+                    {% include 'bioschemas_report.html' %}
+                    {% endblock %}
 
-                    </div>
+                    <!-- <div id="block_valid" class="block">
+
+                    </div> -->
 
                 </section>
 
diff --git a/templates/bioschemas_report.html b/templates/bioschemas_report.html
new file mode 100644
index 00000000..b08452ec
--- /dev/null
+++ b/templates/bioschemas_report.html
@@ -0,0 +1,261 @@
+<script type="text/javascript" charset="utf-8">
+
+$(document).ready(function () {
+
+    // console.log('trying to connect...');
+    // var socket = io.connect({{ config['SERVER_IP'] | tojson }});
+    // console.log('connected');    
+
+    // socket.on('connect', function () {
+    //     socket.emit('hello', { data: 'I\'m connected!' });
+    //     console.log('hello message sent');
+    // });
+
+
+    {% if request.path == '/bioschemas_validation' %}
+        console.log("Static loading");
+        data = {{ results | tojson | safe }};
+        validation_report_gen(data, "static");
+
+    // {% elif request.path == '/inspect' %}
+    //     console.log("Dynamic loading");
+    //     socket.on('done_check_shape', function (data) {
+    //         console.log("DONE !!");
+    //         validation_report_gen(data, "dynamic");
+    //         $("#btn_bioschemas").removeClass("is-loading");
+    //         $("#btn_annot_bioschemas").removeClass("is-hidden");
+    //     });
+    {% endif %}
+
+    
+});
+
+function validation_report_gen(data, generation){
+
+    const valid_container = document.getElementById("block_valid_report");
+
+    const hvalid_template = document.getElementById('head-valid-template').innerHTML;
+    const tvalid_template = document.getElementById("table-valid-template").innerHTML;
+    const tvalids_template = document.getElementById("tables-valid-template").innerHTML;
+    const rvalid_template = document.getElementById("row-valid-template").innerHTML;
+
+    var index = 0;
+    $.each(data, function (key, value) {
+        index++;
+        var str_index = index.toString();
+        var resource = key
+        var type = data[key]['type']
+        var profile = data[key]['ref_profile']
+        var conforms = data[key]['conforms']
+        var method = data[key]['method']
+        var deprecated = data[key]['deprecated']
+        var latest_profile = data[key]['latest_profile']
+        var show_latest_profile = Boolean(latest_profile != true)
+
+        if ((method != "by_conformsto") && (generation == "static")) {
+            return;
+        };
+
+
+        var bs_logo_html = '<img src="{{ url_for("static",filename="images/hexagon_color_bs.png") }}" width="25" height="25" style="vertical-align:middle;">'
+        // Validation report head
+        var hvalid_rendered = Mustache.render(hvalid_template, { 
+            is_method_ct: Boolean(method == "by_conformsto"),
+            resource: resource,
+            type: type,
+            profile: profile,
+            bs_logo_html: bs_logo_html,
+            deprecated: deprecated,
+            show_latest_profile: show_latest_profile,
+            latest_profile: latest_profile,
+        });
+        valid_container.innerHTML += hvalid_rendered;
+
+
+        // Required results tables
+        var trequi_index = index.toString() + "-requi-tbody"
+        var treco_index = index.toString() + "-reco-tbody"
+        var table_rendered = Mustache.render(tvalids_template, { 
+            resource: resource,
+            conforms: conforms,
+            index_requi: trequi_index,
+            index_reco: treco_index,
+
+        });
+        valid_container.innerHTML += table_rendered;
+
+
+        // Required results row
+        var tmiss_body_container = document.getElementById(trequi_index);
+        $.each(data[key]['errors'], function (index, item) {
+            let row_requi_valid_rendered = Mustache.render(rvalid_template, { 
+                item: item,
+                class: "has-text-danger has-text-weight-bold",
+                text: "must be",
+            });
+            tmiss_body_container.innerHTML += row_requi_valid_rendered;
+        });
+
+
+        // Recommended results row
+        var treco_body_container = document.getElementById(treco_index);
+        $.each(data[key]['warnings'], function (index, item) {
+            let row_reco_valid_rendered = Mustache.render(rvalid_template, { 
+                item: item,
+                class: "has-text-warning has-text-weight-bold",
+                text: "should be",
+            });
+            treco_body_container.innerHTML += row_reco_valid_rendered;
+        });
+
+    });
+};
+
+
+</script>
+
+
+<!-- Template validation head -->
+<!-- <script id="head-valid-template" type="text/x-handlebars-template"></script> -->
+<script id="head-valid-template" type="text/html">
+    <hr name="bs_report_sep">
+    <h5 class="subtitle" style="line-height: 1.5;">
+        <p>
+            <span class="tag is-dark is-medium">
+                <a target="_blank" href="{% raw %}{{resource}}{% endraw %}">{% raw %}{{resource}}{% endraw %}</a>
+            </span>
+            has type 
+            <span class="tag is-dark">
+                <a target="_blank" href="{% raw %}{{type}}{% endraw %}">{% raw %}{{type}}{% endraw %}</a>
+            </span>
+        </p>
+        <p>
+            <div>
+                {% raw %}
+                {{ #is_method_ct }}
+
+                {{{ bs_logo_html }}} 
+                &nbsp;Using&nbsp;
+                <span class="tag is-dark">
+                    <a target=_blank href="{{profile}}">{{profile}}</a>
+                </span>
+                {{ #deprecated }}
+                <span class="tag is-info">
+                    Deprecated
+                </span>
+                {{ /deprecated }}
+                &nbsp;for validation, specified from the&nbsp;<b>dct:conformsTo</b>&nbsp;property.
+
+                {{ /is_method_ct }}
+                {{ ^is_method_ct}}
+
+                No&nbsp;<b>dct:conformsTo</b>&nbsp;property found, using&nbsp;
+                <span class="tag is-dark">
+                    <a target=_blank href="{{profile}}">{{profile}}</a>
+                </span>
+                &nbsp;profile for validation.
+
+                {{ /is_method_ct }}
+                {% endraw %}
+            </div>
+        </p>
+        <p>
+            {% raw %}
+            {{ #show_latest_profile }}
+            There is a more recent version of this profile, you may concider to update it: 
+            <span class="tag is-info is-light">
+                <a target=_blank href="{{ latest_profile }}">{{ latest_profile }}</a>
+            </span>
+            {{ /show_latest_profile }}
+            {% endraw %}
+        </p>
+    </h5>
+</script>
+
+
+<!-- Template validation head for conformsTo-->
+<script id="head-ct-valid-template" type="text/html">
+
+</script>
+
+
+<!-- Template validation tables required and recommended -->
+<script id="tables-valid-template" type="text/html">
+    <div class="columns is-multiline is-mobile">
+        <div class="column is-one-half">
+            <table class="table is-striped is-fullwidth">
+                <thead><tr><th>Required missing properties</th></tr></thead>
+                <tbody id="{% raw %}{{index_requi}}{% endraw %}"></tbody>
+            </table>
+            {% raw %}
+            {{ #conforms }}
+            <p>
+                Congratulation, 
+                <span class="tag is-success is-light is-medium">
+                    <a target=_blank href="{{ resource }}">{{ resource }}</a>
+                </span>
+                has a 
+                <span class="has-text-success has-text-weight-bold">valid</span> 
+                Bioschemas profile !
+            </p>
+            {{ /conforms }}
+            {% endraw %}
+        </div>
+        <div class="column is-one-half">
+            <table class="table is-striped is-fullwidth">
+                <thead><tr><th>Improvements</th></tr></thead>
+                <tbody id="{% raw %}{{index_reco}}{% endraw %}"></tbody>
+            </table>
+        </div>
+    </div>
+</script>
+
+
+<!-- Template to generate each row of validations template -->
+<script id="row-valid-template" type="text/html">
+    <tr>
+        <td>
+            <span class="tag is-light">
+                <a target=_blank href="{% raw %}{{item}}{% endraw %}">{% raw %}{{item}}{% endraw %}</a>
+            </span> 
+            <span class="{% raw %}{{class}}{% endraw %}">{% raw %}{{text}}{% endraw %}</span> 
+            provided
+        </td>
+    </tr>
+</script>
+
+
+
+<!-- /!\ Not used ! Template for one table -->
+<script id="table-valid-template" type="text/html">
+        <div class="column is-one-half">
+            <table class="table is-striped is-fullwidth">
+                <thead><tr><th>{% raw %}{{thead}}{% endraw %}</th></tr></thead>
+                <tbody id="{% raw %}{{index}}{% endraw %}"></tbody>
+            </table>
+        </div>
+</script>
+
+
+
+
+
+<div id="block_valid_report" class="block">
+    <!-- <div id="block_test">
+
+    </div>
+    {{ request.path }}
+    <br>
+    {% if request.path == '/bioschemas_validation' %}
+
+        {%  for key, value in results.items() %} 
+            {% if value.method == 'by_conformsto' %}            
+                <h1>Key: {{ key }}</h1>
+                <div class="block">
+                    <h5 class="subtitle"><span class="tag is-info is-light"><a target="_blank" href="{{key}}">{{key}}</a></span></h5>
+                    has type <span class="tag is-dark"><a target="_blank" href="{{value.type}}">{{value.type}}</a></span>
+                </div>
+            {% endif %}
+        {% endfor %}
+    {% endif %} -->
+</div>
\ No newline at end of file
diff --git a/templates/inspect.html b/templates/inspect.html
index f342ef48..3db9a35d 100644
--- a/templates/inspect.html
+++ b/templates/inspect.html
@@ -1,9 +1,13 @@
-<link rel="stylesheet" href="../static/css/bulma-divider.min.css">{% extends "layout.html" %}
+<link rel="stylesheet" href="../static/css/bulma-divider.min.css">
+
+{% extends "layout.html" %}
 
 {% block nav %}
 {% include 'nav.html' %}
 {% endblock %}
 
+
+
 {% block body %}
 
 <!-- TESTING Display -->
@@ -437,48 +441,49 @@
     });
 
     socket.on('done_check_shape', function (data) {
-        console.log(data);
-        var valid_html = "";
-        $.each(data, function (key, value) {
-            var resource = key
-            var type = data[key]['type']
-            var profile = data[key]['ref_profile']
-            var conforms = data[key]['conforms']
-            valid_html += '<div class="block">'
-            valid_html += '<h5 class="subtitle"> <span class="tag is-info is-light"><a target=_blank href=' + resource + '></h5'
-            valid_html += '<p>' + resource + '</a></span> has type <span class="tag is-dark"><a target=_blank href=' + type + '>' + type + '</a></span> </p>'
-            valid_html += '<p>should be conform to profile <span class="tag is-dark"><a target=_blank href=' + profile + '>' + profile + '</a></span></p><br>'
-
-            if (conforms == true) {
-                valid_html += '<p> has a <span class="has-text-success has-text-weight-bold">valid</span> Bioschemas profile</p>'
-            } else {
-                valid_html += '<div class="columns is-multiline is-mobile">'
-                valid_html += '<div class="column is-one-half">'
-                valid_html += '<table class="table is-striped is-fullwidth">'
-                valid_html += '<thead><tr><th>Required missing properties</th></tr></thead>'
-                valid_html += '<tbody>'
-                $.each(data[key]['errors'], function (index, item) {
-                    var row = '<tr>';
-                    row += '<td> <span class="tag is-light"><a target=_blank href=' + item + '>' + item + '</a></span> <span class="has-text-danger has-text-weight-bold">must be</span> provided</td>';
-                    valid_html += row + '</tr>';
-                });
-                valid_html += '</tbody></table></div>'
-                valid_html += '<div class="column is-one-half">'
-                valid_html += '<table class="table is-striped is-fullwidth">'
-                valid_html += '<thead><tr><th>Improvements</th></tr></thead>'
-                valid_html += '<tbody>'
-                $.each(data[key]['warnings'], function (index, item) {
-                    var row = '<tr>';
-                    row += '<td><span class="tag is-light"><a target=_blank href=' + item + '>' + item + '</a></span> <span class="has-text-warning has-text-weight-bold">should be</span> provided</td>';
-                    valid_html += row + '</tr>';
-                });
-                valid_html += '</tbody></table></div>'
-                valid_html += '</div>'
-            }
-            valid_html += '</div>'
+        console.log("Bioschemas profiles validated");
+        validation_report_gen(data, "dynamic");
+        // var valid_html = "";
+        // $.each(data, function (key, value) {
+        //     var resource = key
+        //     var type = data[key]['type']
+        //     var profile = data[key]['ref_profile']
+        //     var conforms = data[key]['conforms']
+        //     valid_html += '<div class="block">'
+        //     valid_html += '<h5 class="subtitle"> <span class="tag is-info is-light"><a target=_blank href=' + resource + '></h5'
+        //     valid_html += '<p>' + resource + '</a></span> has type <span class="tag is-dark"><a target=_blank href=' + type + '>' + type + '</a></span> </p>'
+        //     valid_html += '<p>should be conform to profile <span class="tag is-dark"><a target=_blank href=' + profile + '>' + profile + '</a></span></p><br>'
+
+        //     if (conforms == true) {
+        //         valid_html += '<p> has a <span class="has-text-success has-text-weight-bold">valid</span> Bioschemas profile</p>'
+        //     } else {
+        //         valid_html += '<div class="columns is-multiline is-mobile">'
+        //         valid_html += '<div class="column is-one-half">'
+        //         valid_html += '<table class="table is-striped is-fullwidth">'
+        //         valid_html += '<thead><tr><th>Required missing properties</th></tr></thead>'
+        //         valid_html += '<tbody>'
+        //         $.each(data[key]['errors'], function (index, item) {
+        //             var row = '<tr>';
+        //             row += '<td> <span class="tag is-light"><a target=_blank href=' + item + '>' + item + '</a></span> <span class="has-text-danger has-text-weight-bold">must be</span> provided</td>';
+        //             valid_html += row + '</tr>';
+        //         });
+        //         valid_html += '</tbody></table></div>'
+        //         valid_html += '<div class="column is-one-half">'
+        //         valid_html += '<table class="table is-striped is-fullwidth">'
+        //         valid_html += '<thead><tr><th>Improvements</th></tr></thead>'
+        //         valid_html += '<tbody>'
+        //         $.each(data[key]['warnings'], function (index, item) {
+        //             var row = '<tr>';
+        //             row += '<td><span class="tag is-light"><a target=_blank href=' + item + '>' + item + '</a></span> <span class="has-text-warning has-text-weight-bold">should be</span> provided</td>';
+        //             valid_html += row + '</tr>';
+        //         });
+        //         valid_html += '</tbody></table></div>'
+        //         valid_html += '</div>'
+        //     }
+        //     valid_html += '</div>'
 
-        });
-        $('#block_valid').html(valid_html);
+        // });
+        // $('#block_valid').html(valid_html);
 
         // annot table
         // var rows = '';
@@ -626,6 +631,9 @@
     </div>
 </article> -->
 
+
+
+
 <article class="message">
     <div class="message-body is-inspect">
         <h2 class="subtitle"><b>Step 1: fetch RDF metadata from the resource URL</b></h2>
@@ -691,6 +699,7 @@ <h2 class="subtitle"><b>Step 2: Enrich Graph</b></h2>
 
 
 
+
 <!-- </article> -->
 <!-- </section> -->
 
@@ -780,6 +789,10 @@ <h1 class="subtitle"><b>Step 3: Metadata quality checks</b></h1>
                         </p>
                     </div>
 
+                    {% block test %}
+                    {% include 'bioschemas_report.html' %}
+                    {% endblock %}
+
                     <div id="block_valid" class="block">
 
                     </div>
diff --git a/templates/layout.html b/templates/layout.html
index 55e635a7..54cc2dd7 100644
--- a/templates/layout.html
+++ b/templates/layout.html
@@ -9,6 +9,7 @@
 
     <script src="https://ajax.googleapis.com/ajax/libs/jquery/3.4.1/jquery.min.js"></script>
     <script src="https://code.jquery.com/ui/1.13.1/jquery-ui.min.js"></script>
+    <script src="https://cdnjs.cloudflare.com/ajax/libs/mustache.js/2.3.0/mustache.min.js"></script>
     <script type="text/javascript" charset="utf8"
         src="https://cdn.datatables.net/1.10.19/js/jquery.dataTables.js"></script>
     <script type="text/javascript" charset="utf8"
diff --git a/tests/test_API.py b/tests/test_API.py
index 255f0d90..ccde3f3f 100644
--- a/tests/test_API.py
+++ b/tests/test_API.py
@@ -30,6 +30,7 @@ def list_api_inspect():
 class APITestCase(unittest.TestCase):
     url_biotools = "https://bio.tools/jaspar"
     url_datacite = "https://search.datacite.org/works/10.7892/boris.108387"
+    url_workflow_hub = "https://workflowhub.eu/workflows/18"
 
     def setUp(self):
         app.config["ENV"] = "test"
@@ -57,7 +58,7 @@ def test_check_all(self):
             "/api/check/metrics_all?url=" + self.url_biotools,
             # headers={"Content-Type": "application/json"}
         )
-
+        response.get_json()
         self.assertEqual(200, response.status_code)
         self.assertEqual(11, len(response.get_json()))
 
@@ -83,11 +84,11 @@ def test_describe_individual(self):
                     get_api_url + self.url_datacite,
                 )
                 self.assertEqual(200, get_response.status_code)
-                self.assertEqual(45, get_response.get_json()["triples_before"])
+                self.assertEqual(81, get_response.get_json()["triples_before"])
                 if "/api/inspect/describe_openaire" in get_api_url:
-                    self.assertEqual(73, get_response.get_json()["triples_after"])
+                    self.assertEqual(109, get_response.get_json()["triples_after"])
                 else:
-                    self.assertEqual(45, get_response.get_json()["triples_after"])
+                    self.assertEqual(81, get_response.get_json()["triples_after"])
 
                 # POST
                 response = self.app.get(
@@ -101,11 +102,11 @@ def test_describe_individual(self):
                     api_url, json={"json-ld": graph, "url": url}
                 )
                 self.assertEqual(200, post_response.status_code)
-                self.assertEqual(45, post_response.get_json()["triples_before"])
+                self.assertEqual(81, post_response.get_json()["triples_before"])
                 if "/api/inspect/describe_openaire" in api_url:
-                    self.assertEqual(73, post_response.get_json()["triples_after"])
+                    self.assertEqual(109, post_response.get_json()["triples_after"])
                 else:
-                    self.assertEqual(45, post_response.get_json()["triples_after"])
+                    self.assertEqual(81, post_response.get_json()["triples_after"])
 
     def test_inspect_ontologies(self):
         response = self.app.get(
@@ -117,7 +118,48 @@ def test_inspect_ontologies(self):
 
     def test_inspect_bioschemas(self):
         response = self.app.get(
-            "/api/inspect/bioschemas_validation?url=" + self.url_biotools,
+            "/api/inspect/bioschemas_validation?url=" + self.url_workflow_hub,
         )
+        print(len(response.get_json()))
+
+        results_errors_list = []
+        results_warnings_list = []
+
+        expected_errors_list = [2, 5, 5, 3, 3, 3, 3, 3, 3, 3, 3]
+        expected_warnings_list = [12, 12, 11, 8, 8, 8, 8, 8, 8, 8, 8]
+
+        result_json = response.get_json()
+        for key in result_json.keys():
+            results_errors_list.append(len(result_json[key]["errors"]))
+            results_warnings_list.append(len(result_json[key]["warnings"]))
+
+        self.assertCountEqual(results_errors_list, expected_errors_list)
+        self.assertCountEqual(results_warnings_list, expected_warnings_list)
+
         self.assertEqual(200, response.status_code)
         self.assertLess(0, len(response.get_json()))
+
+    # TODO add assertions
+    def test_inspect_bioschemas_by_conformsto(self):
+        response = self.app.get(
+            "/api/inspect/bioschemas_validation_by_conformsto?url="
+            + self.url_workflow_hub,
+        )
+
+        json = response.get_json()
+        self.assertEqual(response.status_code, 200)
+        self.assertEqual(
+            len(json["https://workflowhub.eu/workflows/18?version=1"]["errors"]), 2
+        )
+        self.assertEqual(
+            len(json["https://workflowhub.eu/workflows/18?version=1"]["warnings"]), 12
+        )
+
+    # TODO add assertions
+    def test_inspect_bioschemas_by_types(self):
+        response = self.app.get(
+            "/api/inspect/bioschemas_validation_by_types?url=" + self.url_workflow_hub,
+        )
+        json = response.get_json()
+        self.assertEqual(response.status_code, 200)
+        self.assertEqual(len(json), 11)
diff --git a/tests/test_gen_shacl.py b/tests/test_gen_shacl.py
index 3a12f626..89ea246d 100644
--- a/tests/test_gen_shacl.py
+++ b/tests/test_gen_shacl.py
@@ -48,10 +48,11 @@ def test_validate_shape_tool(self):
             shacl_shape=shape,
         )
 
-        self.assertFalse(conforms)
-        self.assertEqual(len(warnings), 4)
-        self.assertEqual(len(errors), 3)
+        self.assertTrue(conforms)
+        self.assertEqual(len(warnings), 0)
+        self.assertEqual(len(errors), 0)
 
+    @unittest.skip("Testing method no longer used")
     def test_validate_shape_dataset(self):
         classes = ["sc:Dataset"]
         minimal_dataset_properties = [
@@ -86,6 +87,7 @@ def test_generate_right_shape(self):
         shape, ref_profile = gen_SHACL_from_target_class(target_class=target_class)
         self.assertTrue("sh:path" in shape)
 
+    @unittest.skip("Issue with parsing remote bio.tools jsonld")
     def test_biotools_validation(self):
         res = validate_any_from_RDF(
             input_url="https://bio.tools/api/jaspar?format=jsonld", rdf_syntax="json-ld"
@@ -135,7 +137,7 @@ def test_inrae_dataverse_validation(self):
         res = validate_any_from_microdata(
             input_url="https://data.inrae.fr/dataset.xhtml?persistentId=doi:10.15454/PL3HWQ"
         )
-        self.assertEqual(len(res[0]), 0)
+        self.assertEqual(len(res[0]), 1)
 
     def test_workflow_validation(self):
         res = validate_any_from_microdata(
diff --git a/tests/test_jsonld.py b/tests/test_jsonld.py
new file mode 100644
index 00000000..14988a59
--- /dev/null
+++ b/tests/test_jsonld.py
@@ -0,0 +1,84 @@
+import unittest
+from rdflib import ConjunctiveGraph
+import logging
+
+logging.basicConfig(
+    level=logging.DEBUG,
+    format="[%(asctime)s] {%(filename)s:%(lineno)d} %(levelname)-8s %(message)s",
+    datefmt="%Y-%m-%d %H:%M:%S",
+)
+
+
+class JsonLDTestCase(unittest.TestCase):
+
+    jsonld_http_context = """
+{
+  "@context": "http://schema.org/",
+  "@type": "Person",
+  "name": "Jane Doe",
+  "jobTitle": "Professor",
+  "telephone": "(425) 123-4567",
+  "url": "http://www.janedoe.com"
+}
+    """
+
+    jsonld_https_context = """
+{
+  "@context": "https://schema.org/",
+  "@type": "Person",
+  "name": "Jane Doe",
+  "jobTitle": "Professor",
+  "telephone": "(425) 123-4567",
+  "url": "http://www.janedoe.com"
+}
+    """
+
+    jsonld_array_http_context = """
+{
+  "@context": ["http://schema.org/"],
+  "@type": "Person",
+  "name": "Jane Doe",
+  "jobTitle": "Professor",
+  "telephone": "(425) 123-4567",
+  "url": "http://www.janedoe.com"
+}
+    """
+
+    jsonld_dict_vocab_http_context = """
+{
+  "@context": {"@vocab": "http://schema.org/"},
+  "@type": "Person",
+  "name": "Jane Doe",
+  "jobTitle": "Professor",
+  "telephone": "(425) 123-4567",
+  "url": "http://www.janedoe.com"
+}
+    """
+
+    @classmethod
+    def tearDownModule(cls) -> None:
+        super().tearDownModule()
+
+    def test_http_context(self):
+        kg = ConjunctiveGraph()
+        kg.parse(data=self.jsonld_http_context, format="json-ld")
+        self.assertEquals(len(kg), 5)
+
+    def test_https_context(self):
+        kg = ConjunctiveGraph()
+        kg.parse(data=self.jsonld_https_context, format="json-ld")
+        self.assertEquals(len(kg), 5)
+
+    def test_array_context(self):
+        kg = ConjunctiveGraph()
+        kg.parse(data=self.jsonld_array_http_context, format="json-ld")
+        self.assertEquals(len(kg), 5)
+
+    def test_dict_context(self):
+        kg = ConjunctiveGraph()
+        kg.parse(data=self.jsonld_dict_vocab_http_context, format="json-ld")
+        self.assertEquals(len(kg), 5)
+
+
+if __name__ == "__main__":
+    unittest.main()
diff --git a/tests/test_profile_import.py b/tests/test_profile_import.py
new file mode 100644
index 00000000..bd394b0e
--- /dev/null
+++ b/tests/test_profile_import.py
@@ -0,0 +1,178 @@
+import unittest
+import requests
+import re
+import json
+import yaml
+from rdflib import ConjunctiveGraph
+
+from profiles.bioschemas_shape_gen import get_profiles_specs_from_github
+from profiles.bioschemas_shape_gen import gen_SHACL_from_profile
+
+# from profiles.Profile
+from profiles.ProfileFactory import (
+    dyn_evaluate_profile_with_conformsto,
+    profile_file_parser,
+    load_profiles,
+    update_profiles,
+    evaluate_profile_with_conformsto,
+    evaluate_profile_from_type,
+)
+
+from profiles.ProfileFactory import ProfileFactory
+
+from os import environ, path
+from dotenv import load_dotenv
+
+from metrics.WebResource import WebResource
+
+
+basedir = path.abspath(path.dirname(__file__))
+load_dotenv(path.join(basedir, ".env"))
+
+# from app import app
+# from flask import current_app
+
+# from requests.packages.urllib3.util.ssl_ import create_urllib3_context
+# create_urllib3_context()
+
+
+class ImportBSProfileTestCase(unittest.TestCase):
+    def setUp(self):
+        """Set up application for testing."""
+        github_token = environ.get("GITHUB_TOKEN")
+
+        self.headers = {
+            "Authorization": "token {}".format(github_token),
+            "User-Agent": "FAIR-checker",
+            "Accept": "application/vnd.github.v3+json",
+        }
+
+    @unittest.skip("Need github TOKEN key to work")
+    def test_github_rate_limite(self):
+        url = "https://api.github.com/rate_limit"
+        response = requests.get(url, headers=self.headers)
+        print("Remaining: " + str(response.json()["resources"]["core"]["remaining"]))
+
+    @unittest.skip("Doesn't work on github action, need to fix")
+    def test_namespace_SequenceAnnotation(self):
+        gh_profile_url = "https://raw.githubusercontent.com/BioSchemas/specifications/master/SequenceAnnotation/jsonld/SequenceAnnotation_v0.7-DRAFT.json"
+        response = requests.get(gh_profile_url, headers=self.headers)
+        jsonld = response.json()
+        kg = ConjunctiveGraph()
+        kg.parse(data=jsonld, format="json-ld")
+        print(len(kg))
+
+    @unittest.skip("Need github TOKEN key to work")
+    def test_import_bs_specifications(self):
+        self.test_github_rate_limite()
+        profiles = get_profiles_specs_from_github()
+        self.test_github_rate_limite()
+        self.assertEqual(31, len(profiles))
+
+        for profile in profiles:
+            print(json.dumps(profile, indent=2))
+
+    def test_gen_SHACL_from_import(self):
+        self.test_github_rate_limite()
+        profiles = get_profiles_specs_from_github()
+        for profile_key in profiles.keys():
+            print(json.dumps(profiles[profile_key], indent=4))
+            gen_SHACL_from_profile(
+                profiles[profile_key]["name"],
+                "sc:" + profiles[profile_key]["name"],
+                profiles[profile_key]["min_props"],
+                profiles[profile_key]["rec_props"],
+            )
+
+    def test_load_profiles(self):
+        self.test_github_rate_limite()
+        profiles = load_profiles()
+        self.assertEqual(31, len(profiles))
+
+    def test_create_profile_object(self):
+        profiles_list = ProfileFactory.create_all_profiles_from_specifications()
+        self.assertEqual(31, len(profiles_list))
+
+    def test_update_profiles(self):
+        update_profiles()
+
+    def test_ref_profiles(self):
+        profiles_dict = ProfileFactory.create_all_profiles_from_specifications()
+        for profile_k in profiles_dict.keys():
+            ref_profile = profiles_dict[profile_k].get_ref_profile()
+            response = requests.head(ref_profile, verify=False, timeout=5)
+            print(ref_profile)
+            print(response.status_code)
+            # self.assertEqual(response.status_code, 200)
+
+    def test_profile_get_name(self):
+        profiles_dict = ProfileFactory.create_all_profiles_from_specifications()
+        for profile_k in profiles_dict.keys():
+            print(profiles_dict[profile_k])
+
+    def test_wfh_conformsto_eval(self):
+        url = "https://workflowhub.eu/workflows/18"
+        kg = WebResource(url).get_rdf()
+
+        self.assertEqual(len(kg), 49)
+        result = dyn_evaluate_profile_with_conformsto(kg)
+
+        self.assertEqual(len(result), 1)
+
+    def test_wfh_type_eval(self):
+        url = "https://workflowhub.eu/workflows/18"
+        kg = WebResource(url).get_rdf()
+
+        self.assertEqual(len(kg), 49)
+        result = evaluate_profile_from_type(kg)
+
+        self.assertEqual(len(result), 11)
+
+    def test_fairchecker_conformsto_eval(self):
+        url = "https://fair-checker.france-bioinformatique.fr/"
+        kg = WebResource(url).get_rdf()
+
+        self.assertEqual(len(kg), 35)
+        result = dyn_evaluate_profile_with_conformsto(kg)
+
+        self.assertEqual(len(result), 0)
+
+    def test_fairchecker_type_eval(self):
+        url = "https://fair-checker.france-bioinformatique.fr/"
+        kg = WebResource(url).get_rdf()
+
+        self.assertEqual(len(kg), 35)
+
+        result = evaluate_profile_from_type(kg)
+        print(result)
+
+        self.assertEqual(len(result), 3)
+        self.assertTrue(result["https://orcid.org/0000-0002-3597-8557"]["conforms"])
+
+    def test_profile_file_parser(self):
+
+        url_profiles = [
+            "https://raw.githubusercontent.com/BioSchemas/bioschemas-dde/main/bioschemas.json",
+            "https://raw.githubusercontent.com/BioSchemas/bioschemas-dde/main/bioschemasdrafts.json",
+            "https://raw.githubusercontent.com/BioSchemas/specifications/master/Gene/jsonld/Gene_v0.3-DRAFT-2018_08_21.json",
+            "https://raw.githubusercontent.com/BioSchemas/specifications/master/ComputationalWorkflow/jsonld/ComputationalWorkflow_v1.0-RELEASE.json",
+        ]
+
+        results = {}
+        profiles_names_list = []
+        for url_profile in url_profiles:
+            profiles_dict = profile_file_parser(url_profile)
+
+            for profile_key in profiles_dict:
+                if profiles_dict[profile_key]["name"] not in profiles_names_list:
+                    results[profile_key] = profiles_dict[profile_key]
+                    profiles_names_list.append(profiles_dict[profile_key]["name"])
+        self.assertEqual(len(results), 31)
+
+    def test_req_profile_versions(self):
+        response = requests.get(
+            "https://raw.githubusercontent.com/BioSchemas/bioschemas.github.io/master/_data/profile_versions.yaml"
+        )
+        content = response.text
+        dict_content = yaml.safe_load(content)
+        print(dict_content)
diff --git a/tests/test_profile_reco.py b/tests/test_profile_reco.py
new file mode 100644
index 00000000..fefd8739
--- /dev/null
+++ b/tests/test_profile_reco.py
@@ -0,0 +1,170 @@
+from contextlib import AbstractAsyncContextManager
+import unittest
+
+from rich.console import Console
+from rich.table import Table
+from rich.text import Text
+
+from rdflib import ConjunctiveGraph, URIRef
+from rdflib.namespace import RDF
+
+from profiles.bioschemas_shape_gen import gen_SHACL_from_profile
+from profiles.bioschemas_shape_gen import gen_SHACL_from_target_class
+from profiles.bioschemas_shape_gen import validate_shape_from_RDF
+from profiles.bioschemas_shape_gen import validate_any_from_RDF
+from profiles.bioschemas_shape_gen import validate_any_from_KG
+from profiles.bioschemas_shape_gen import validate_any_from_microdata
+from profiles.bioschemas_shape_gen import validate_shape_from_microdata
+from profiles.bioschemas_shape_gen import load_profiles
+
+from profiles.Profile import Profile
+from profiles.ProfileFactory import ProfileFactory, find_conformsto_subkg
+
+from metrics.WebResource import WebResource
+
+
+class GenSHACLTestCase(unittest.TestCase):
+    bs_profiles = {
+        "sc:SoftwareApplication": {
+            "min_props": ["sc:name", "sc:description", "sc:url"],
+            "rec_props": [
+                "sc:additionalType",
+                "sc:applicationCategory",
+                "sc:applicationSubCategory",
+                "sc:author",
+                "sc:license",
+                "sc:citation",
+                "sc:featureList",
+                "sc:softwareVersion",
+            ],
+            "ref_profile": "https://bioschemas.org/profiles/ComputationalTool/1.0-RELEASE",
+        },
+    }
+
+    @classmethod
+    def tearDownModule(cls) -> None:
+        super().tearDownModule()
+        browser = WebResource.WEB_BROWSER_HEADLESS
+        browser.quit()
+
+    def test_reco(self):
+        soft = """
+        @prefix sc: <http://schema.org/> .
+        @prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
+        _:123   rdf:type sc:SoftwareApplication ;
+                sc:name "MyTool" ;
+                sc:author "Someone" ;
+                sc:citation "A paper" .
+        """
+
+        kg = ConjunctiveGraph()
+        kg.parse(data=soft, format="turtle")
+
+        p = Profile(
+            shape_name="ComputationalTool",
+            target_classes=["sc:SoftwareApplication"],
+            min_props=self.bs_profiles["sc:SoftwareApplication"]["min_props"],
+            rec_props=self.bs_profiles["sc:SoftwareApplication"]["rec_props"],
+            ref_profile=self.bs_profiles["sc:SoftwareApplication"]["ref_profile"],
+        )
+        sim = p.compute_similarity(kg)
+        print(sim)
+        self.assertAlmostEquals(sim, 0.29)
+
+    def test_list_all_conformsto(self):
+        list_ct = ProfileFactory.list_all_conformsto()
+        self.assertEqual(len(list_ct), 31)
+
+    def test_profile_factory_from_specifications(self):
+        # profiles = ProfileFactory.create_all_profiles_from_specifications()
+        profiles = load_profiles()
+        wr_workflowhub = WebResource("https://workflowhub.eu/workflows/18")
+        wr_kg = wr_workflowhub.get_rdf()
+        print(len(wr_kg))
+
+        query_conformsto = """
+            PREFIX dct: <http://purl.org/dc/terms/>
+
+            SELECT ?s ?o WHERE {
+                ?s dct:conformsTo ?o
+            }
+        """
+        results = wr_kg.query(query_conformsto)
+
+        for r in results:
+            conformsto = r["o"].strip("/")
+            class_id = r["s"]
+            sub_kg = ConjunctiveGraph()
+            for s, p, o in wr_kg.triples((class_id, None, None)):
+                sub_kg.add((s, p, o))
+            # print(conformsto)
+            # print(sub_kg.serialize(format="json-ld"))
+            # print(len(sub_kg))
+            for profile_key in profiles.keys():
+                if profiles[profile_key]["ref_profile"] == conformsto:
+                    print("Found conformsTo corresponding profile.")
+
+                    profile = Profile(
+                        shape_name=profiles[profile_key]["name"],
+                        target_classes=profiles[profile_key]["target_classes"],
+                        min_props=profiles[profile_key]["required"],
+                        rec_props=profiles[profile_key]["recommended"],
+                        ref_profile=profiles[profile_key]["ref_profile"],
+                    )
+                    shape = profile.gen_SHACL_from_profile()
+                    validation = profile.validate_shape(
+                        knowledge_graph=sub_kg, shacl_shape=shape
+                    )
+                    conforms, warnings, errors = validation
+
+                    self.assertFalse(conforms)
+                    self.assertEqual(len(warnings), 12)
+                    self.assertEqual(len(errors), 3)
+
+    def test_pofile_factory(self):
+        console = Console()
+
+        something = """
+        @prefix sc: <http://schema.org/> .
+        @prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
+        _:123   rdf:type sc:CreativeWork ;
+                sc:name "MyTool" ;
+                sc:author "Someone" ;
+                sc:citation "A paper" .
+        """
+
+        kg = ConjunctiveGraph()
+        kg.parse(data=something, format="turtle")
+
+        results = {}
+
+        profiles = ProfileFactory.create_all_profiles_from_specifications()
+
+        console.print(f"Loaded {len(profiles)} Bioschemas profiles")
+
+        for p_name in profiles.keys():
+            profile = profiles[p_name]
+            sim = profile.compute_similarity(kg)
+            results[p_name] = {"score": sim, "ref": ""}
+
+        sorted_results = dict(
+            sorted(results.items(), key=lambda item: item[1]["score"], reverse=True)
+        )
+        print(sorted_results)
+
+        table = Table(show_header=True, header_style="bold magenta")
+        table.add_column("Profile", justify="left")
+        table.add_column("Similarity score", justify="right")
+        table.add_column("Profile URI", justify="right", style="green")
+
+        for hit in sorted_results.keys():
+            table.add_row(
+                str(hit),
+                str(sorted_results[hit]["score"]),
+                f"[link={sorted_results[hit]['ref']}]{sorted_results[hit]['ref']}[/link]",
+            )
+        console.print(table)
+
+
+if __name__ == "__main__":
+    unittest.main()
diff --git a/tests/test_socketio.py b/tests/test_socketio.py
deleted file mode 100644
index 782fb526..00000000
--- a/tests/test_socketio.py
+++ /dev/null
@@ -1,752 +0,0 @@
-import json
-import unittest
-
-from flask import Flask, session, request, json as flask_json
-from flask_socketio import (
-    SocketIO,
-    send,
-    emit,
-    join_room,
-    leave_room,
-    Namespace,
-    disconnect,
-)
-
-app = Flask(__name__)
-app.config["SECRET_KEY"] = "secret"
-socketio = SocketIO(app)
-disconnected = None
-
-
-@socketio.on("connect")
-def on_connect(auth):
-    if auth != {"foo": "bar"}:  # pragma: no cover
-        return False
-    if request.args.get("fail"):
-        return False
-    send("connected")
-    send(json.dumps(request.args.to_dict(flat=False)))
-    send(
-        json.dumps(
-            {
-                h: request.headers[h]
-                for h in request.headers.keys()
-                if h not in ["Host", "Content-Type", "Content-Length"]
-            }
-        )
-    )
-
-
-@socketio.on("disconnect")
-def on_disconnect():
-    global disconnected
-    disconnected = "/"
-
-
-@socketio.event(namespace="/test")
-def connect():
-    send("connected-test")
-    send(json.dumps(request.args.to_dict(flat=False)))
-    send(
-        json.dumps(
-            {
-                h: request.headers[h]
-                for h in request.headers.keys()
-                if h not in ["Host", "Content-Type", "Content-Length"]
-            }
-        )
-    )
-
-
-@socketio.on("disconnect", namespace="/test")
-def on_disconnect_test():
-    global disconnected
-    disconnected = "/test"
-
-
-@socketio.event
-def message(message):
-    send(message)
-    if message == "test session":
-        session["a"] = "b"
-    if message not in "test noackargs":
-        return message
-
-
-@socketio.on("json")
-def on_json(data):
-    send(data, json=True, broadcast=True)
-    if not data.get("noackargs"):
-        return data
-
-
-@socketio.on("message", namespace="/test")
-def on_message_test(message):
-    send(message)
-
-
-@socketio.on("json", namespace="/test")
-def on_json_test(data):
-    send(data, json=True, namespace="/test")
-
-
-@socketio.on("my custom event")
-def on_custom_event(data):
-    emit("my custom response", data)
-    if not data.get("noackargs"):
-        return data
-
-
-@socketio.on("other custom event")
-@socketio.on("and another custom event")
-def get_request_event(data):
-    global request_event_data
-    request_event_data = request.event
-    emit("my custom response", data)
-
-
-def get_request_event2(data):
-    global request_event_data
-    request_event_data = request.event
-    emit("my custom response", data)
-
-
-socketio.on_event("yet another custom event", get_request_event2)
-
-
-@socketio.on("my custom namespace event", namespace="/test")
-def on_custom_event_test(data):
-    emit("my custom namespace response", data, namespace="/test")
-
-
-def on_custom_event_test2(data):
-    emit("my custom namespace response", data, namespace="/test")
-
-
-socketio.on_event(
-    "yet another custom namespace event", on_custom_event_test2, namespace="/test"
-)
-
-
-@socketio.on("my custom broadcast event")
-def on_custom_event_broadcast(data):
-    emit("my custom response", data, broadcast=True)
-
-
-@socketio.on("my custom broadcast namespace event", namespace="/test")
-def on_custom_event_broadcast_test(data):
-    emit("my custom namespace response", data, namespace="/test", broadcast=True)
-
-
-@socketio.on("join room")
-def on_join_room(data):
-    join_room(data["room"])
-
-
-@socketio.on("leave room")
-def on_leave_room(data):
-    leave_room(data["room"])
-
-
-@socketio.on("join room", namespace="/test")
-def on_join_room_namespace(data):
-    join_room(data["room"])
-
-
-@socketio.on("leave room", namespace="/test")
-def on_leave_room_namespace(data):
-    leave_room(data["room"])
-
-
-@socketio.on("my room event")
-def on_room_event(data):
-    room = data.pop("room")
-    emit("my room response", data, room=room)
-
-
-@socketio.on("my room namespace event", namespace="/test")
-def on_room_namespace_event(data):
-    room = data.pop("room")
-    send("room message", room=room)
-
-
-@socketio.on("bad response")
-def on_bad_response():
-    emit("my custom response", {"foo": socketio})
-
-
-@socketio.on("bad callback")
-def on_bad_callback():
-    return {"foo": socketio}
-
-
-@socketio.on("changing response")
-def on_changing_response():
-    data = {"foo": "bar"}
-    emit("my custom response", data)
-    data["foo"] = "baz"
-    return data
-
-
-@socketio.on_error()
-def error_handler(value):
-    if isinstance(value, AssertionError):
-        global error_testing
-        error_testing = True
-    else:
-        raise value
-    return "error"
-
-
-@socketio.on("error testing")
-def raise_error(data):
-    raise AssertionError()
-
-
-@socketio.on_error("/test")
-def error_handler_namespace(value):
-    if isinstance(value, AssertionError):
-        global error_testing_namespace
-        error_testing_namespace = True
-    else:
-        raise value
-    return "error/test"
-
-
-@socketio.on("error testing", namespace="/test")
-def raise_error_namespace(data):
-    raise AssertionError()
-
-
-@socketio.on_error_default
-def error_handler_default(value):
-    if isinstance(value, AssertionError):
-        global error_testing_default
-        error_testing_default = True
-    else:
-        raise value
-    return "error/default"
-
-
-@socketio.on("error testing", namespace="/unused_namespace")
-def raise_error_default(data):
-    raise AssertionError()
-
-
-class MyNamespace(Namespace):
-    def on_connect(self):
-        send("connected-ns")
-        send(json.dumps(request.args.to_dict(flat=False)))
-        send(
-            json.dumps(
-                {
-                    h: request.headers[h]
-                    for h in request.headers.keys()
-                    if h not in ["Host", "Content-Type", "Content-Length"]
-                }
-            )
-        )
-
-    def on_disconnect(self):
-        global disconnected
-        disconnected = "/ns"
-
-    def on_message(self, message):
-        send(message)
-        if message == "test session":
-            session["a"] = "b"
-        if message not in "test noackargs":
-            return message
-
-    def on_json(self, data):
-        send(data, json=True, broadcast=True)
-        if not data.get("noackargs"):
-            return data
-
-    def on_exit(self, data):
-        disconnect()
-
-    def on_my_custom_event(self, data):
-        emit("my custom response", data)
-        if not data.get("noackargs"):
-            return data
-
-    def on_other_custom_event(self, data):
-        global request_event_data
-        request_event_data = request.event
-        emit("my custom response", data)
-
-
-socketio.on_namespace(MyNamespace("/ns"))
-
-
-@app.route("/session")
-def session_route():
-    session["foo"] = "bar"
-    return ""
-
-
-class TestSocketIO(unittest.TestCase):
-    @classmethod
-    def setUpClass(cls):
-        pass
-
-    @classmethod
-    def tearDownClass(cls):
-        pass
-
-    def setUp(self):
-        pass
-
-    def tearDown(self):
-        pass
-
-    def test_connect(self):
-        client = socketio.test_client(app, auth={"foo": "bar"})
-        client2 = socketio.test_client(app, auth={"foo": "bar"})
-        self.assertTrue(client.is_connected())
-        self.assertTrue(client2.is_connected())
-        self.assertNotEqual(client.eio_sid, client2.eio_sid)
-        received = client.get_received()
-        self.assertEqual(len(received), 3)
-        self.assertEqual(received[0]["args"], "connected")
-        self.assertEqual(received[1]["args"], "{}")
-        self.assertEqual(received[2]["args"], "{}")
-        client.disconnect()
-        self.assertFalse(client.is_connected())
-        self.assertTrue(client2.is_connected())
-        client2.disconnect()
-        self.assertFalse(client2.is_connected())
-
-    def test_connect_query_string_and_headers(self):
-        client = socketio.test_client(
-            app,
-            query_string="?foo=bar&foo=baz",
-            headers={"Authorization": "Bearer foobar"},
-            auth={"foo": "bar"},
-        )
-        received = client.get_received()
-        self.assertEqual(len(received), 3)
-        self.assertEqual(received[0]["args"], "connected")
-        self.assertEqual(received[1]["args"], '{"foo": ["bar", "baz"]}')
-        self.assertEqual(received[2]["args"], '{"Authorization": "Bearer foobar"}')
-        client.disconnect()
-
-    def test_connect_namespace(self):
-        client = socketio.test_client(app, namespace="/test")
-        self.assertTrue(client.is_connected("/test"))
-        received = client.get_received("/test")
-        self.assertEqual(len(received), 3)
-        self.assertEqual(received[0]["args"], "connected-test")
-        self.assertEqual(received[1]["args"], "{}")
-        self.assertEqual(received[2]["args"], "{}")
-        client.disconnect(namespace="/test")
-        self.assertFalse(client.is_connected("/test"))
-
-    def test_connect_namespace_query_string_and_headers(self):
-        client = socketio.test_client(
-            app,
-            namespace="/test",
-            query_string="foo=bar",
-            headers={"My-Custom-Header": "Value"},
-        )
-        received = client.get_received("/test")
-        self.assertEqual(len(received), 3)
-        self.assertEqual(received[0]["args"], "connected-test")
-        self.assertEqual(received[1]["args"], '{"foo": ["bar"]}')
-        self.assertEqual(received[2]["args"], '{"My-Custom-Header": "Value"}')
-        client.disconnect(namespace="/test")
-
-    def test_connect_rejected(self):
-        client = socketio.test_client(app, query_string="fail=1", auth={"foo": "bar"})
-        self.assertFalse(client.is_connected())
-
-    def test_disconnect(self):
-        global disconnected
-        disconnected = None
-        client = socketio.test_client(app, auth={"foo": "bar"})
-        client.disconnect()
-        self.assertEqual(disconnected, "/")
-
-    def test_disconnect_namespace(self):
-        global disconnected
-        disconnected = None
-        client = socketio.test_client(app, namespace="/test")
-        client.disconnect("/test")
-        self.assertEqual(disconnected, "/test")
-
-    def test_send(self):
-        client = socketio.test_client(app, auth={"foo": "bar"})
-        client.get_received()
-        client.send("echo this message back")
-        received = client.get_received()
-        self.assertEqual(len(received), 1)
-        self.assertEqual(received[0]["args"], "echo this message back")
-
-    def test_send_json(self):
-        client1 = socketio.test_client(app, auth={"foo": "bar"})
-        client2 = socketio.test_client(app, auth={"foo": "bar"})
-        client1.get_received()
-        client2.get_received()
-        client1.send({"a": "b"}, json=True)
-        received = client1.get_received()
-        self.assertEqual(len(received), 1)
-        self.assertEqual(received[0]["args"]["a"], "b")
-        received = client2.get_received()
-        self.assertEqual(len(received), 1)
-        self.assertEqual(received[0]["args"]["a"], "b")
-
-    def test_send_namespace(self):
-        client = socketio.test_client(app, namespace="/test")
-        client.get_received("/test")
-        client.send("echo this message back", namespace="/test")
-        received = client.get_received("/test")
-        self.assertTrue(len(received) == 1)
-        self.assertTrue(received[0]["args"] == "echo this message back")
-
-    def test_send_json_namespace(self):
-        client = socketio.test_client(app, namespace="/test")
-        client.get_received("/test")
-        client.send({"a": "b"}, json=True, namespace="/test")
-        received = client.get_received("/test")
-        self.assertEqual(len(received), 1)
-        self.assertEqual(received[0]["args"]["a"], "b")
-
-    def test_emit(self):
-        client = socketio.test_client(app, auth={"foo": "bar"})
-        client.get_received()
-        client.emit("my custom event", {"a": "b"})
-        received = client.get_received()
-        self.assertEqual(len(received), 1)
-        self.assertEqual(len(received[0]["args"]), 1)
-        self.assertEqual(received[0]["name"], "my custom response")
-        self.assertEqual(received[0]["args"][0]["a"], "b")
-
-    def test_emit_binary(self):
-        client = socketio.test_client(app, auth={"foo": "bar"})
-        client.get_received()
-        client.emit("my custom event", {"a": b"\x01\x02\x03"})
-        received = client.get_received()
-        self.assertEqual(len(received), 1)
-        self.assertEqual(len(received[0]["args"]), 1)
-        self.assertEqual(received[0]["name"], "my custom response")
-        self.assertEqual(received[0]["args"][0]["a"], b"\x01\x02\x03")
-
-    def test_request_event_data(self):
-        client = socketio.test_client(app, auth={"foo": "bar"})
-        client.get_received()
-        global request_event_data
-        request_event_data = None
-        client.emit("other custom event", "foo")
-        expected_data = {"message": "other custom event", "args": ("foo",)}
-        self.assertEqual(request_event_data, expected_data)
-        client.emit("and another custom event", "bar")
-        expected_data = {"message": "and another custom event", "args": ("bar",)}
-        self.assertEqual(request_event_data, expected_data)
-
-    def test_emit_namespace(self):
-        client = socketio.test_client(app, namespace="/test")
-        client.get_received("/test")
-        client.emit("my custom namespace event", {"a": "b"}, namespace="/test")
-        received = client.get_received("/test")
-        self.assertEqual(len(received), 1)
-        self.assertEqual(len(received[0]["args"]), 1)
-        self.assertEqual(received[0]["name"], "my custom namespace response")
-        self.assertEqual(received[0]["args"][0]["a"], "b")
-
-    def test_broadcast(self):
-        client1 = socketio.test_client(app, auth={"foo": "bar"})
-        client2 = socketio.test_client(app, auth={"foo": "bar"})
-        client3 = socketio.test_client(app, namespace="/test")
-        client2.get_received()
-        client3.get_received("/test")
-        client1.emit("my custom broadcast event", {"a": "b"}, broadcast=True)
-        received = client2.get_received()
-        self.assertEqual(len(received), 1)
-        self.assertEqual(len(received[0]["args"]), 1)
-        self.assertEqual(received[0]["name"], "my custom response")
-        self.assertEqual(received[0]["args"][0]["a"], "b")
-        self.assertEqual(len(client3.get_received("/test")), 0)
-
-    def test_broadcast_namespace(self):
-        client1 = socketio.test_client(app, namespace="/test")
-        client2 = socketio.test_client(app, namespace="/test")
-        client3 = socketio.test_client(app, auth={"foo": "bar"})
-        client2.get_received("/test")
-        client3.get_received()
-        client1.emit(
-            "my custom broadcast namespace event", {"a": "b"}, namespace="/test"
-        )
-        received = client2.get_received("/test")
-        self.assertEqual(len(received), 1)
-        self.assertEqual(len(received[0]["args"]), 1)
-        self.assertEqual(received[0]["name"], "my custom namespace response")
-        self.assertEqual(received[0]["args"][0]["a"], "b")
-        self.assertEqual(len(client3.get_received()), 0)
-
-    @unittest.skip("Fails in github actions")
-    def test_session(self):
-        flask_client = app.test_client()
-        flask_client.get("/session")
-        client = socketio.test_client(
-            app, flask_test_client=flask_client, auth={"foo": "bar"}
-        )
-        client.get_received()
-        client.send("echo this message back")
-        self.assertEqual(
-            socketio.server.environ[client.eio_sid]["saved_session"], {"foo": "bar"}
-        )
-        client.send("test session")
-        self.assertEqual(
-            socketio.server.environ[client.eio_sid]["saved_session"],
-            {"a": "b", "foo": "bar"},
-        )
-
-    def test_room(self):
-        client1 = socketio.test_client(app, auth={"foo": "bar"})
-        client2 = socketio.test_client(app, auth={"foo": "bar"})
-        client3 = socketio.test_client(app, namespace="/test")
-        client1.get_received()
-        client2.get_received()
-        client3.get_received("/test")
-        client1.emit("join room", {"room": "one"})
-        client2.emit("join room", {"room": "one"})
-        client3.emit("join room", {"room": "one"}, namespace="/test")
-        client1.emit("my room event", {"a": "b", "room": "one"})
-        received = client1.get_received()
-        self.assertEqual(len(received), 1)
-        self.assertEqual(len(received[0]["args"]), 1)
-        self.assertEqual(received[0]["name"], "my room response")
-        self.assertEqual(received[0]["args"][0]["a"], "b")
-        self.assertEqual(received, client2.get_received())
-        received = client3.get_received("/test")
-        self.assertEqual(len(received), 0)
-        client1.emit("leave room", {"room": "one"})
-        client1.emit("my room event", {"a": "b", "room": "one"})
-        received = client1.get_received()
-        self.assertEqual(len(received), 0)
-        received = client2.get_received()
-        self.assertEqual(len(received), 1)
-        self.assertEqual(len(received[0]["args"]), 1)
-        self.assertEqual(received[0]["name"], "my room response")
-        self.assertEqual(received[0]["args"][0]["a"], "b")
-        client2.disconnect()
-        socketio.emit("my room event", {"a": "b"}, room="one")
-        received = client1.get_received()
-        self.assertEqual(len(received), 0)
-        received = client3.get_received("/test")
-        self.assertEqual(len(received), 0)
-        client3.emit("my room namespace event", {"room": "one"}, namespace="/test")
-        received = client3.get_received("/test")
-        self.assertEqual(len(received), 1)
-        self.assertEqual(received[0]["name"], "message")
-        self.assertEqual(received[0]["args"], "room message")
-        socketio.close_room("one", namespace="/test")
-        client3.emit("my room namespace event", {"room": "one"}, namespace="/test")
-        received = client3.get_received("/test")
-        self.assertEqual(len(received), 0)
-
-    def test_error_handling(self):
-        client = socketio.test_client(app, auth={"foo": "bar"})
-        client.get_received()
-        global error_testing
-        error_testing = False
-        client.emit("error testing", "")
-        self.assertTrue(error_testing)
-
-    def test_error_handling_namespace(self):
-        client = socketio.test_client(app, namespace="/test")
-        client.get_received("/test")
-        global error_testing_namespace
-        error_testing_namespace = False
-        client.emit("error testing", "", namespace="/test")
-        self.assertTrue(error_testing_namespace)
-
-    def test_error_handling_default(self):
-        client = socketio.test_client(app, namespace="/unused_namespace")
-        client.get_received("/unused_namespace")
-        global error_testing_default
-        error_testing_default = False
-        client.emit("error testing", "", namespace="/unused_namespace")
-        self.assertTrue(error_testing_default)
-
-    def test_ack(self):
-        client1 = socketio.test_client(app, auth={"foo": "bar"})
-        client2 = socketio.test_client(app, auth={"foo": "bar"})
-        client3 = socketio.test_client(app, auth={"foo": "bar"})
-        ack = client1.send("echo this message back", callback=True)
-        self.assertEqual(ack, "echo this message back")
-        ack = client1.send("test noackargs", callback=True)
-        # python-socketio releases before 1.5 did not correctly implement
-        # callbacks with no arguments. Here we check for [] (the correct, 1.5
-        # and up response) and None (the wrong pre-1.5 response).
-        self.assertTrue(ack == [] or ack is None)
-        ack2 = client2.send({"a": "b"}, json=True, callback=True)
-        self.assertEqual(ack2, {"a": "b"})
-        ack3 = client3.emit("my custom event", {"a": "b"}, callback=True)
-        self.assertEqual(ack3, {"a": "b"})
-
-    def test_noack(self):
-        client1 = socketio.test_client(app, auth={"foo": "bar"})
-        client2 = socketio.test_client(app, auth={"foo": "bar"})
-        client3 = socketio.test_client(app, auth={"foo": "bar"})
-        no_ack_dict = {"noackargs": True}
-        noack = client1.send("test noackargs", callback=False)
-        self.assertIsNone(noack)
-        noack2 = client2.send(no_ack_dict, json=True, callback=False)
-        self.assertIsNone(noack2)
-        noack3 = client3.emit("my custom event", no_ack_dict)
-        self.assertIsNone(noack3)
-
-    def test_error_handling_ack(self):
-        client1 = socketio.test_client(app, auth={"foo": "bar"})
-        client2 = socketio.test_client(app, namespace="/test")
-        client3 = socketio.test_client(app, namespace="/unused_namespace")
-        errorack = client1.emit("error testing", "", callback=True)
-        self.assertEqual(errorack, "error")
-        errorack_namespace = client2.emit(
-            "error testing", "", namespace="/test", callback=True
-        )
-        self.assertEqual(errorack_namespace, "error/test")
-        errorack_default = client3.emit(
-            "error testing", "", namespace="/unused_namespace", callback=True
-        )
-        self.assertEqual(errorack_default, "error/default")
-
-    def test_on_event(self):
-        client = socketio.test_client(app, auth={"foo": "bar"})
-        client.get_received()
-        global request_event_data
-        request_event_data = None
-        client.emit("yet another custom event", "foo")
-        expected_data = {"message": "yet another custom event", "args": ("foo",)}
-        self.assertEqual(request_event_data, expected_data)
-
-        client = socketio.test_client(app, namespace="/test")
-        client.get_received("/test")
-        client.emit("yet another custom namespace event", {"a": "b"}, namespace="/test")
-        received = client.get_received("/test")
-        self.assertEqual(len(received), 1)
-        self.assertEqual(len(received[0]["args"]), 1)
-        self.assertEqual(received[0]["name"], "my custom namespace response")
-        self.assertEqual(received[0]["args"][0]["a"], "b")
-
-    def test_connect_class_based(self):
-        client = socketio.test_client(app, namespace="/ns")
-        received = client.get_received("/ns")
-        self.assertEqual(len(received), 3)
-        self.assertEqual(received[0]["args"], "connected-ns")
-        self.assertEqual(received[1]["args"], "{}")
-        self.assertEqual(received[2]["args"], "{}")
-        client.disconnect("/ns")
-
-    def test_connect_class_based_query_string_and_headers(self):
-        client = socketio.test_client(
-            app,
-            namespace="/ns",
-            query_string="foo=bar",
-            headers={"Authorization": "Basic foobar"},
-        )
-        received = client.get_received("/ns")
-        self.assertEqual(len(received), 3)
-        self.assertEqual(received[0]["args"], "connected-ns")
-        self.assertEqual(received[1]["args"], '{"foo": ["bar"]}')
-        self.assertEqual(received[2]["args"], '{"Authorization": "Basic foobar"}')
-        client.disconnect("/ns")
-
-    def test_disconnect_class_based(self):
-        global disconnected
-        disconnected = None
-        client = socketio.test_client(app, namespace="/ns")
-        client.disconnect("/ns")
-        self.assertEqual(disconnected, "/ns")
-
-    def test_send_class_based(self):
-        client = socketio.test_client(app, namespace="/ns")
-        client.get_received("/ns")
-        client.send("echo this message back", namespace="/ns")
-        received = client.get_received("/ns")
-        self.assertTrue(len(received) == 1)
-        self.assertTrue(received[0]["args"] == "echo this message back")
-
-    def test_send_json_class_based(self):
-        client = socketio.test_client(app, namespace="/ns")
-        client.get_received("/ns")
-        client.send({"a": "b"}, json=True, namespace="/ns")
-        received = client.get_received("/ns")
-        self.assertEqual(len(received), 1)
-        self.assertEqual(received[0]["args"]["a"], "b")
-
-    def test_server_disconnected(self):
-        client = socketio.test_client(app, namespace="/ns")
-        client.get_received("/ns")
-        client.emit("exit", {}, namespace="/ns")
-        self.assertFalse(client.is_connected("/ns"))
-        with self.assertRaises(RuntimeError):
-            client.emit("hello", {}, namespace="/ns")
-
-    def test_emit_class_based(self):
-        client = socketio.test_client(app, namespace="/ns")
-        client.get_received("/ns")
-        client.emit("my_custom_event", {"a": "b"}, namespace="/ns")
-        received = client.get_received("/ns")
-        self.assertEqual(len(received), 1)
-        self.assertEqual(len(received[0]["args"]), 1)
-        self.assertEqual(received[0]["name"], "my custom response")
-        self.assertEqual(received[0]["args"][0]["a"], "b")
-
-    def test_request_event_data_class_based(self):
-        client = socketio.test_client(app, namespace="/ns")
-        client.get_received("/ns")
-        global request_event_data
-        request_event_data = None
-        client.emit("other_custom_event", "foo", namespace="/ns")
-        expected_data = {"message": "other_custom_event", "args": ("foo",)}
-        self.assertEqual(request_event_data, expected_data)
-
-    def test_delayed_init(self):
-        app = Flask(__name__)
-        socketio = SocketIO(allow_upgrades=False, json=flask_json)
-
-        @socketio.on("connect")
-        def on_connect():
-            send({"connected": "foo"}, json=True)
-
-        socketio.init_app(app, cookie="foo")
-        self.assertFalse(socketio.server.eio.allow_upgrades)
-        self.assertEqual(socketio.server.eio.cookie, "foo")
-
-        client = socketio.test_client(app, auth={"foo": "bar"})
-        received = client.get_received()
-        self.assertEqual(len(received), 1)
-        self.assertEqual(received[0]["args"], {"connected": "foo"})
-
-    def test_encode_decode(self):
-        client = socketio.test_client(app, auth={"foo": "bar"})
-        client.get_received()
-        data = {"foo": "bar", "invalid": socketio}
-        self.assertRaises(
-            TypeError, client.emit, "my custom event", data, callback=True
-        )
-        data = {"foo": "bar"}
-        ack = client.emit("my custom event", data, callback=True)
-        data["foo"] = "baz"
-        received = client.get_received()
-        self.assertEqual(ack, {"foo": "bar"})
-        self.assertEqual(len(received), 1)
-        self.assertEqual(received[0]["args"][0], {"foo": "bar"})
-
-    def test_encode_decode_2(self):
-        client = socketio.test_client(app, auth={"foo": "bar"})
-        self.assertRaises(TypeError, client.emit, "bad response")
-        self.assertRaises(TypeError, client.emit, "bad callback", callback=True)
-        client.get_received()
-        ack = client.emit("changing response", callback=True)
-        received = client.get_received()
-        self.assertEqual(len(received), 1)
-        self.assertEqual(received[0]["args"][0], {"foo": "bar"})
-        self.assertEqual(ack, {"foo": "baz"})
-
-
-if __name__ == "__main__":
-    unittest.main()
diff --git a/tests/test_valid_bioschemas_live_deploys.py b/tests/test_valid_bioschemas_live_deploys.py
new file mode 100644
index 00000000..5bb15ecc
--- /dev/null
+++ b/tests/test_valid_bioschemas_live_deploys.py
@@ -0,0 +1,261 @@
+import unittest
+import requests
+import json
+from rdflib import Graph
+
+from metrics.FairCheckerExceptions import (
+    BioschemasProfileNotFoundException,
+    BioschemasProfileException,
+)
+
+from profiles.ProfileFactory import (
+    evaluate_profile_from_type,
+    evaluate_profile_with_conformsto,
+    dyn_evaluate_profile_with_conformsto,
+    ProfileFactory,
+    Profile,
+    PROFILES,
+)
+from metrics.WebResource import WebResource
+
+PROFILE_URLS = [
+    "https://bioschemas.org/profiles/Taxon/0.7-DRAFT",
+    "https://bioschemas.org/profiles/Study/0.2-DRAFT",
+    "https://bioschemas.org/profiles/ProteinAnnotation/0.6-DRAFT",
+    "https://bioschemas.org/profiles/TaxonName/0.1-DRAFT",
+    "https://bioschemas.org/profiles/Dataset/0.4-DRAFT",
+    "https://bioschemas.org/profiles/Gene/1.0-RELEASE",
+    "https://bioschemas.org/profiles/Course/1.0-RELEASE",
+    "https://bioschemas.org/profiles/DataCatalog/",
+    "https://bioschemas.org/profiles/TrainingMaterial/1.0-RELEASE",
+    "https://bioschemas.org/profiles/ComputationalTool/1.0-RELEASE",
+    "https://bioschemas.org/profiles/ComputationalWorkflow/1.0-RELEASE",
+    "https://bioschemas.org/profiles/CourseInstance/0.9-DRAFT",
+    "https://bioschemas.org/profiles/SequenceRange/0.1-DRAFT",
+    "https://bioschemas.org/profiles/ScholarlyArticle/0.2-DRAFT-2020_12_03",
+    "https://bioschemas.org/profiles/Disease/0.1-DRAFT",
+    "https://bioschemas.org/profiles/Person/0.2-DRAFT-2019_07_19",
+    "https://bioschemas.org/profiles/Dataset/0.3-RELEASE-2019_06_14",
+    "https://bioschemas.org/profiles/Taxon/0.6-RELEASE",
+    "https://bioschemas.org/profiles/CourseInstance/1.0-RELEASE",
+    "https://bioschemas.org/profiles/Course/0.10-DRAFT",
+    "https://bioschemas.org/profiles/FormalParameter/1.0-RELEASE",
+    "https://bioschemas.org/profiles/MolecularEntity/0.5-RELEASE",
+    "https://bioschemas.org/profiles/Dataset/1.0-RELEASE",
+    "https://bioschemas.org/profiles/Protein/0.12-DRAFT",
+]
+
+
+def gen_urls_for_live_deploys_profiles():
+    live_deploys_remote_file = "https://raw.githubusercontent.com/BioSchemas/bioschemas.github.io/master/_data/live_deployments.json"
+    res = requests.get(live_deploys_remote_file)
+    live_deploys = res.json()
+    # for r in random.sample(live_deploys["resources"], 5):
+    profile_urls = []
+    for r in live_deploys["resources"]:
+        # print(json.dumps(r, indent=2))
+        profile_url_prefix = "https://bioschemas.org/profiles/"
+        for p in r["profiles"]:
+            profile_url = profile_url_prefix + p["profileName"] + "/" + p["conformsTo"]
+            profile_urls.append(profile_url)
+    return list(set(profile_urls))
+
+
+def get_live_deploys_urls():
+    results = []
+    live_deploys_remote_file = "https://raw.githubusercontent.com/BioSchemas/bioschemas.github.io/master/_data/live_deployments.json"
+    res = requests.get(live_deploys_remote_file)
+    live_deploys = res.json()
+    # for r in random.sample(live_deploys["resources"], 5):
+    for r in live_deploys["resources"]:
+        results.append(r["url"])
+    return results
+
+
+class BioschemasLiveDeploysTestCase(unittest.TestCase):
+    @classmethod
+    def tearDownModule(cls) -> None:
+        super().tearDownModule()
+        browser = WebResource.WEB_BROWSER_HEADLESS
+        browser.quit()
+
+    def test_workflow_without_conformsto(self):
+        input_url = "https://workflowhub.eu/workflows/263"
+        web_resource = WebResource(input_url)
+        kg = web_resource.get_rdf()
+        res = evaluate_profile_from_type(kg)
+        print(json.dumps(res, indent=4))
+
+        self.assertEqual(
+            len(res["https://workflowhub.eu/workflows/263?version=1"]["errors"]), 3
+        )
+
+    def test_workflow_with_conformsto(self):
+        input_url = "https://workflowhub.eu/workflows/263"
+        web_resource = WebResource(input_url)
+        kg = web_resource.get_rdf()
+        res = dyn_evaluate_profile_with_conformsto(kg)
+        print(json.dumps(res, indent=4))
+
+        self.assertEqual(
+            len(res["https://workflowhub.eu/workflows/263?version=1"]["errors"]), 2
+        )
+
+    # Bioschemas profile not found (need handle)
+    # https://cells.ebisc.org/BIHi006-D
+    @unittest.skip("Bioschemas profile not found (need handle")
+    def test_biosample_conformsto(self):
+        input_url = "https://cells.ebisc.org/BIHi006-D"
+        web_resource = WebResource(input_url)
+        kg = web_resource.get_rdf()
+        print(kg.serialize(format="ttl"))
+        self.assertGreater(len(kg), 0)
+        res = dyn_evaluate_profile_with_conformsto(kg)
+        print(json.dumps(res, indent=2))
+        self.assertEqual(res["https://cells.ebisc.org/BIHi006-D"]["conforms"], True)
+        self.assertEqual(len(res["https://cells.ebisc.org/BIHi006-D"]["errors"]), 0)
+
+    def test_fairchecker_conformsto(self):
+        input_url = "https://fair-checker.france-bioinformatique.fr"
+        web_resource = WebResource(input_url)
+        kg = web_resource.get_rdf()
+        self.assertGreater(len(kg), 0)
+        res = dyn_evaluate_profile_with_conformsto(kg)
+        print(json.dumps(res, indent=2))
+        # self.assertEqual(res["https://fair-checker.france-bioinformatique.fr"]["conforms"], True)
+        # self.assertEqual(
+        #     len(res["https://fair-checker.france-bioinformatique.fr"]["errors"]), 0
+        # )
+
+    # TODO add assertions
+    def test_fairchecker_type(self):
+        input_url = "https://fair-checker.france-bioinformatique.fr"
+        web_resource = WebResource(input_url)
+        kg = web_resource.get_rdf()
+        self.assertGreater(len(kg), 0)
+        res = evaluate_profile_from_type(kg)
+        print(json.dumps(res, indent=2))
+        # self.assertEqual(res["conforms"], "true")
+        # self.assertEqual(
+        #     len(res["https://fair-checker.france-bioinformatique.fr"]["errors"]), 0
+        # )
+
+    def test_profile_url_generation(self):
+        profiles = gen_urls_for_live_deploys_profiles()
+        wrong_urls = []
+        correct_urls = []
+        for p in profiles:
+            print(p)
+            response = requests.get(p)
+            if response.status_code != 200:
+                wrong_urls.append(p)
+            else:
+                correct_urls.append(p)
+        print(f"{len(profiles)} declared profiles in live deploys")
+        print(f"{len(correct_urls)} profile urls are ok")
+        print(f"{len(wrong_urls)} profile urls are not resolvable")
+        print("Correct URLs:")
+        print(correct_urls)
+        print("Non resolvable profile URLs:")
+        print(wrong_urls)
+
+    def test_json_profile_accessibility(self):
+        datacat = "https://bioschemas.org/profiles/DataCatalog/"
+        gene = "https://bioschemas.org/profiles/Gene/1.0-RELEASE"
+
+        try:
+            ProfileFactory.create_profile_from_remote(datacat)
+        except BioschemasProfileNotFoundException as error:
+            print(error)
+            self.assertIsNotNone(error)
+
+        profile_gene = ProfileFactory.create_profile_from_remote(gene)
+
+        self.assertEqual(profile_gene.shape_name, "Gene")
+        self.assertEqual(len(profile_gene.min_props), 2)
+        self.assertEqual(len(profile_gene.rec_props), 4)
+        shape_rdf = profile_gene.get_shacl_shape()
+        shape_graph = Graph()
+        shape_graph.parse(data=shape_rdf, format="ttl")
+        self.assertEqual(len(shape_graph), 26)
+
+    @unittest.skip("Need to be part of bioschemas tests")
+    def test_ld_bioschemas_annot(self):
+        res = get_live_deploys_urls()
+        print(res)
+        errors = []
+        i = 0
+        for r in res:
+            if True:
+                i += 1
+                print("#######" + str(i))
+                try:
+                    status_code = requests.head(r).status_code
+                    print(r)
+                    print("Status code: " + str(status_code))
+                    kg = WebResource(r).get_rdf()
+                    print("Triples: " + str(len(kg)))
+                    if not len(kg) > 0:
+                        print(f"# Error with {r}")
+                        errors.append(r)
+                except requests.exceptions.ConnectionError as e:
+                    print(e)
+
+        print(f"{len(res)} tested URLS")
+        print(f"{len(errors)} failing URLS")
+        print(errors)
+
+    @unittest.skip("Error with curly in RDF URIs not handled for turtle serialization")
+    def test_uri_invalid(self):
+        resource = "https://ebisc.org/"
+        resource = "https://tess.elixir-europe.org/"
+        kg = WebResource(resource).get_rdf()
+        print(len(kg))
+        print(kg.serialize(format="json-ld"))
+        # print(kg.serialize(format="turtle"))
+        print(kg.serialize(format="nquads"))
+
+    @unittest.skip("Need it on bioschemas side")
+    def test_all(self):
+        to_be_skipped = [
+            "https://www.proteinatlas.org/",
+            "https://enanomapper.github.io/tutorials/",
+            "https://www.nanocommons.eu/",
+            "https://riskgone.eu/",
+            "https://humanmine.org/",
+            "https://www.rhea-db.org/",
+            "http://www.ebi.ac.uk/pdbe/",
+            "https://www.omicsdi.org/",
+            "https://ippidb.pasteur.fr/",
+            "https://mint.bio.uniroma2.it/",
+        ]
+        valid_bioschemas = []
+        print()
+        live_deploys_remote_file = "https://raw.githubusercontent.com/BioSchemas/bioschemas.github.io/master/_data/live_deployments.json"
+        res = requests.get(live_deploys_remote_file)
+        live_deploys = res.json()
+        # for r in random.sample(live_deploys["resources"], 5):
+        for r in live_deploys["resources"]:
+            print(r["url"])
+            if not r["url"] in to_be_skipped:
+                try:
+                    web_resource = WebResource(r["url"])
+                    kg = web_resource.get_rdf()
+                    try:
+                        validation_res = dyn_evaluate_profile_with_conformsto(kg)
+                        for k in validation_res.keys():
+                            if validation_res[k]["conforms"]:
+                                print(f"VALID Bioschemas markup for {k}")
+                                valid_bioschemas.append(validation_res[k])
+                            else:
+                                print(validation_res[k])
+                    except BioschemasProfileException as error:
+                        print(error)
+                except Exception as error:
+                    print(error)
+                    to_be_skipped.append(r["url"])
+        print(to_be_skipped)
+
+
+if __name__ == "__main__":
+    unittest.main()
diff --git a/tests/test_web_resource.py b/tests/test_web_resource.py
index b14bc52f..8b641858 100644
--- a/tests/test_web_resource.py
+++ b/tests/test_web_resource.py
@@ -37,7 +37,7 @@ def test_dataverse(self):
             "https://data.inrae.fr/dataset.xhtml?persistentId=doi:10.15454/P27LDX"
         )
         logging.info(f"{len(dataverse.get_rdf())} loaded RDF triples")
-        self.assertEqual(len(dataverse.get_rdf()), 0)
+        self.assertEqual(len(dataverse.get_rdf()), 234)
         print()
 
     def test_workflowhub(self):
@@ -103,6 +103,55 @@ def test_fairchecker(self):
         logging.info(f"{len(fc.get_rdf())} loaded RDF triples")
         self.assertGreaterEqual(len(fc.get_rdf()), 35)
 
+    def test_elixir(self):
+        elixir = WebResource("https://www.elixir-europe.org/")
+        logging.info(f"{len(elixir.get_rdf())} loaded RDF triples")
+
+    def test_biosamples(self):
+        biosamples = WebResource("https://www.ebi.ac.uk/biosamples/")
+        logging.info(f"{len(biosamples.get_rdf())} loaded RDF triples")
+
+    def test_pscan(self):
+        pscan = WebResource("http://159.149.160.88/pscan/")
+        logging.info(f"{len(pscan.get_rdf())} loaded RDF triples")
+
+    def test_expasy(self):
+        expasy = WebResource("https://prosite.expasy.org")
+        logging.info(f"{len(expasy.get_rdf())} loaded RDF triples")
+
+    def test_UnicodeDecodeError_resources(self):
+        # Workflohub is working correctly, it is a positive control
+        urls = [
+            # "https://workflowhub.eu/workflows/18"
+            # "https://ebisc.org/",
+            "https://www.metanetx.org/",
+            # "https://www.ebi.ac.uk/interpro/",
+            # "https://datacatalog.elixir-luxembourg.org/",
+            # "https://ippidb.pasteur.fr/",
+            # "http://edgar.biocomp.unibo.it/",
+            # "http://phenpath.biocomp.unibo.it/phenpath/",
+            # "https://humanmine.org/",
+            # "https://prosite.expasy.org",
+            # "https://enzyme.expasy.org",
+            # "https://hamap.expasy.org/",
+            # "https://www.ebi.ac.uk/chembl/",
+            # "http://www.ebi.ac.uk/Tools/hmmer/",
+        ]
+
+        for url in urls:
+            wr_kg = WebResource(url).get_rdf()
+            print(len(wr_kg))
+
+    def test_schema_file_context(self):
+        urls = [
+            # "https://www.metanetx.org/",
+            "https://bio.tools/jaspar"
+        ]
+
+        for url in urls:
+            wr_kg = WebResource(url).get_rdf()
+            print(len(wr_kg))
+
 
 if __name__ == "__main__":
     unittest.main()